#### 1700055N04Rik_ID226_4 --> 0 - 1 Original Alignment CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCC-TTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg tgaggcaggcccttactcgtctggcaccagatgttctcaaaatcatccagCTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAACCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTGGTGGGGGCTATTGCTACAggtgcggggggttctgagtttccctagtctgatgagtcttcccaaagacgc Alignment from CESAR CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCC-TTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg tgaggcaggcccttactcgtctggcaccagatgttctcaaaatcatccagCTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAACCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTGGTGGGGGCTATTGCTACAggtgcggggggttctgagtttccctagtctgatgagtcttcccaaagacgc Alignment from Spaln_aa2Genome CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCC-TTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG tgaggcaggcccttactcgtctggcaccagatgttctcaaaatcatccagCTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAACCCcTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTGGTGGGGGCTATTGCTACAGgtgcggggggttctgagtttccctagtctgatgagtcttcccaaagacgc Alignment from Spaln_nt2Genome CTCACCAAGCTGAGCACAGCTTTCATCCGG-AAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG tgaggcaggcccttactcgtctggcaccagatgttctcaaaatcatccagCTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAACCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTGGTGGGGGCTATTGCTACAGgtgcggggggttctgagtttccctagtctgatgagtcttcccaaagacgc Alignment from Pairagon CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAG-CCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG tgaggcaggcccttactcgtctggcaccagatgttctcaaaatcatccagCTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAACCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTGGTGGGGGCTATTGCTACAGgtgcggggggttctgagtttccctagtctgatgagtcttcccaaagacgc Alignment from Exonerate_protein2genome CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAG-CCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG tgaggcaggcccttactcgtctggcaccagatgttctcaaaatcatccagCTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAACCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTGGTGGGGGCTATTGCTACAGgtgcggggggttctgagtttccctagtctgatgagtcttcccaaagacgc Alignment from Exonerate_coding2genome CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAG-CCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG tgaggcaggcccttactcgtctggcaccagatgttctcaaaatcatccagCTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAACCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTGGTGGGGGCTATTGCTACAGgtgcggggggttctgagtttccctagtctgatgagtcttcccaaagacgc Alignment from GeneWise CTCACCAAGCTGAGCACAGCTTTCATCCGGAAA-GAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG tgaggcaggcccttactcgtctggcaccagatgttctcaaaatcatccagCTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAACCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTGGTGGGGGCTATTGCTACAGgtgcggggggttctgagtttccctagtctgatgagtcttcccaaagacgc #### 1700055N04Rik_ID228_6 --> 0 - 1 Original Alignment AGCTGCTTTGCTGTG-ATGTTGGGAGGACCCGAGGAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAg aggtcgtcctgccgtgagcctgccccctcttcctcacatgcctgagtcagAGCTGCTTTGCTGTGCATGCTGGGAGGACCTGAGGAGACCGGGCAACTGCTGGAACACAAATTTGACTATATCTTCTTCACGggtttgtagagccctgtccaggacctggggtggagggatatcacataatat Alignment from CESAR AGCTGCTTTGCTGTG-ATGTTGGGAGGACCCGAGGAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAg aggtcgtcctgccgtgagcctgccccctcttcctcacatgcctgagtcagAGCTGCTTTGCTGTGCATGCTGGGAGGACCTGAGGAGACCGGGCAACTGCTGGAACACAAATTTGACTATATCTTCTTCACGggtttgtagagccctgtccaggacctggggtggagggatatcacataatat Alignment from Spaln_aa2Genome AGCTGCTTTGCTGTG-ATGTTGGGAGGACCCGAGGAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aggtcgtcctgccgtgagcctgccccctcttcctcacatgcctgagtcagAGCTGCTTTGCTGTGcATGCTGGGAGGACCTGAGGAGACCGGGCAACTGCTGGAACACAAATTTGACTATATCTTCTTCACGGgtttgtagagccctgtccaggacctggggtggagggatatcacataatat Alignment from Spaln_nt2Genome AGCTGCTTTGCTGTG-ATGTTGGGAGGACCCGAGGAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aggtcgtcctgccgtgagcctgccccctcttcctcacatgcctgagtcagAGCTGCTTTGCTGTGCATGCTGGGAGGACCTGAGGAGACCGGGCAACTGCTGGAACACAAATTTGACTATATCTTCTTCACGGgtttgtagagccctgtccaggacctggggtggagggatatcacataatat Alignment from Pairagon AGCTGCTTTGCTGTG-ATGTTGGGAGGACCCGAGGAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aggtcgtcctgccgtgagcctgccccctcttcctcacatgcctgagtcagAGCTGCTTTGCTGTGCATGCTGGGAGGACCTGAGGAGACCGGGCAACTGCTGGAACACAAATTTGACTATATCTTCTTCACGGgtttgtagagccctgtccaggacctggggtggagggatatcacataatat Alignment from Exonerate_protein2genome AGCTGCTTTGCTGTG-ATGTTGGGAGGACCCGAGGAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aggtcgtcctgccgtgagcctgccccctcttcctcacatgcctgagtcagAGCTGCTTTGCTGTGCATGCTGGGAGGACCTGAGGAGACCGGGCAACTGCTGGAACACAAATTTGACTATATCTTCTTCACGGgtttgtagagccctgtccaggacctggggtggagggatatcacataatat Alignment from Exonerate_coding2genome AGCTGCTTTGCTGTG-ATGTTGGGAGGACCCGAGGAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aggtcgtcctgccgtgagcctgccccctcttcctcacatgcctgagtcagAGCTGCTTTGCTGTGCATGCTGGGAGGACCTGAGGAGACCGGGCAACTGCTGGAACACAAATTTGACTATATCTTCTTCACGGgtttgtagagccctgtccaggacctggggtggagggatatcacataatat Alignment from GeneWise --TGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAGGAAG aggtcgtcctgccgtgagcctgccccctcttcctcacatgcctgagtcagagCTGCTTTGCTGTGCATGCTGGGAGGACCTGAGGAGACCGGGCAACTGCTGGAACACAAATTTGACTATATCTTCTTCACGGGTTTgtagagccctgtccaggacctggggtggagggatatcacataatat #### 1700123I01Rik_ID1493_5 --> 2 - 0 Original Alignment ggAAACCAGCAGATGATATT-CCTCTTGAGTTG acaggtaaaatagtcttgctccattatgggtgcattttttggtataacagggAAACCAGCAGATGATATTCCCTCTTGAGTTGgtactttttgcttattccatacagagatgagaattgtctctgttacccca Alignment from CESAR ggAAACCAGCAGATGATATT-CCTCTTGAGTTG acaggtaaaatagtcttgctccattatgggtgcattttttggtataacagggAAACCAGCAGATGATATTCCCTCTTGAGTTGgtactttttgcttattccatacagagatgagaattgtctctgttacccca Alignment from Spaln_aa2Genome GGAAACCAGCAGATGATATT-CCTCTTGAGTTG acaggtaaaatagtcttgctccattatgggtgcattttttggtataacagGGAAACCAGCAGATGATATTcCCTCTTGAGTTGgtactttttgcttattccatacagagatgagaattgtctctgttacccca Alignment from Spaln_nt2Genome GGAAACCAGCAGATGATATTCC-TCTTGAGTTG acaggtaaaatagtcttgctccattatgggtgcattttttggtataacagGGAAACCAGCAGATGATATTCCCTCTTGAGTTGgtactttttgcttattccatacagagatgagaattgtctctgttacccca Alignment from Pairagon GGAAACCAGCAGATGATATT-CCTCTTGAGTTG acaggtaaaatagtcttgctccattatgggtgcattttttggtataacagGGAAACCAGCAGATGATATTCCCTCTTGAGTTGgtactttttgcttattccatacagagatgagaattgtctctgttacccca Alignment from Exonerate_protein2genome GGAAACCAGCAGATGATATT-CCTCTTGAGTTG acaggtaaaatagtcttgctccattatgggtgcattttttggtataacagGGAAACCAGCAGATGATATTCCCTCTTGAGTTGgtactttttgcttattccatacagagatgagaattgtctctgttacccca Alignment from Exonerate_coding2genome acaggtaaaatagtcttgctccattatgggtgcattttttggtataacagggaaaccagcagatgatattccctcttgagttggtactttttgcttattccatacagagatgagaattgtctctgttacccca Alignment from GeneWise acaggtaaaatagtcttgctccattatgggtgcattttttggtataacagggaaaccagcagatgatattccctcttgagttggtactttttgcttattccatacagagatgagaattgtctctgttacccca #### 2700081O15Rik_ID2154_4 --> 2 - 1 Original Alignment acGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCCGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGCTGGGTGCCTGAGAGGCCCGGGCCGGCGGAGGAGGAGGAGGGCGAGGGCGAGGGCGAGAGGGAGGGCATCCCGAACCGGCCTCGGAGGGGCCGAGACCATCGCCGCCACTACCAGGAGCGCTGGCGGCTGGAGTACCTCATGGAGCTGGACGGCTGCCGACGCGGCCTGGTGTGCATGGTGTGCGGGGGCGCGCTGGCCTCGCTCAAGATGAGCACCATCAAGCGA-CACATCCGCCAGCGCCACCCCGGCTCCAACAGCCTCAGCGGGCCAGTCAAAGCTCTCATCGCCCAGGAGTGGAGCGAAAAGGCCGCACACCTGCTGGCCCTGGGGCTGCCCAGGCCGGAGTCGCCCAGCGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGGGGAGGGGCAGAGGAGGCGGAGCCAGAGGAGGAGTGGTGGg tcaacacagccagaaggctgagctcttctctctctcttctttgtcaccagacGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCTGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGTTGGGTGTCTGAGAGGCCCGGGCCAGCGGAGGAGGAGGAGGGCGAGGGTGAGGGCGAGAGGGAGGGCATCCCAAACCGGCCTCGAAGGGGCCGAGACCATCGGCGCCACTACCAGGAGCGCTGGCGGCTAGAGTACCTCATGGAGCTGGATGGCTGCCGACGTGGCCTGGTATGTATGGTATGTGGGGGCGCCCTGGCCTCACTCAAGATGAGCACCATCAAGCGGCCACATCCGCCAGCGCCACCCCAGCTCCAACAGCCTCAGCGGGCCGGTCAAAGCTCTCATTGCACAGGAGTGGAGCGAAAAGGCTGCATACCTTCTGGCCCTGGGGCTGCCCAGGCCAGAGTCGCCAAGTGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGAGGAGGGGCAGAGGAGGCAGAGCCAGAGGAGGAGTGGTGGggtgagtctgttaatgggttggagcaactggtgggggagaaagggcaggac Alignment from CESAR acGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCCGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGCTGGGTGCCTGAGAGGCCCGGGCCGGCGGAGGAGGAGGAGGGCGAGGGCGAGGGCGAGAGGGAGGGCATCCCGAACCGGCCTCGGAGGGGCCGAGACCATCGCCGCCACTACCAGGAGCGCTGGCGGCTGGAGTACCTCATGGAGCTGGACGGCTGCCGACGCGGCCTGGTGTGCATGGTGTGCGGGGGCGCGCTGGCCTCGCTCAAGATGAGCACCATCAAGCGA-CACATCCGCCAGCGCCACCCCGGCTCCAACAGCCTCAGCGGGCCAGTCAAAGCTCTCATCGCCCAGGAGTGGAGCGAAAAGGCCGCACACCTGCTGGCCCTGGGGCTGCCCAGGCCGGAGTCGCCCAGCGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGGGGAGGGGCAGAGGAGGCGGAGCCAGAGGAGGAGTGGTGGg tcaacacagccagaaggctgagctcttctctctctcttctttgtcaccagacGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCTGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGTTGGGTGTCTGAGAGGCCCGGGCCAGCGGAGGAGGAGGAGGGCGAGGGTGAGGGCGAGAGGGAGGGCATCCCAAACCGGCCTCGAAGGGGCCGAGACCATCGGCGCCACTACCAGGAGCGCTGGCGGCTAGAGTACCTCATGGAGCTGGATGGCTGCCGACGTGGCCTGGTATGTATGGTATGTGGGGGCGCCCTGGCCTCACTCAAGATGAGCACCATCAAGCGGCCACATCCGCCAGCGCCACCCCAGCTCCAACAGCCTCAGCGGGCCGGTCAAAGCTCTCATTGCACAGGAGTGGAGCGAAAAGGCTGCATACCTTCTGGCCCTGGGGCTGCCCAGGCCAGAGTCGCCAAGTGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGAGGAGGGGCAGAGGAGGCAGAGCCAGAGGAGGAGTGGTGGggtgagtctgttaatgggttggagcaactggtgggggagaaagggcaggac Alignment from Spaln_aa2Genome ACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCCGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGCTGGGTGCCTGAGAGGCCCGGGCCGGCGGAGGAGGAGGAGGGCGAGGGCGAGGGCGAGAGGGAGGGCATCCCGAACCGGCCTCGGAGGGGCCGAGACCATCGCCGCCACTACCAGGAGCGCTGGCGGCTGGAGTACCTCATGGAGCTGGACGGCTGCCGACGCGGCCTGGTGTGCATGGTGTGCGGGGGCGCGCTGGCCTCGCTCAAGATGAGCACCATCAAGCGA-CACATCCGCCAGCGCCACCCCGGCTCCAACAGCCTCAGCGGGCCAGTCAAAGCTCTCATCGCCCAGGAGTGGAGCGAAAAGGCCGCACACCTGCTGGCCCTGGGGCTGCCCAGGCCGGAGTCGCCCAGCGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGGGGAGGGGCAGAGGAGGCGGAGCCAGAGGAGGAGTGGTGGG tcaacacagccagaaggctgagctcttctctctctcttctttgtcaccagACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCTGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGTTGGGTGTCTGAGAGGCCCGGGCCAGCGGAGGAGGAGGAGGGCGAGGGTGAGGGCGAGAGGGAGGGCATCCCAAACCGGCCTCGAAGGGGCCGAGACCATCGGCGCCACTACCAGGAGCGCTGGCGGCTAGAGTACCTCATGGAGCTGGATGGCTGCCGACGTGGCCTGGTATGTATGGTATGTGGGGGCGCCCTGGCCTCACTCAAGATGAGCACCATCAAGCGGcCACATCCGCCAGCGCCACCCCAGCTCCAACAGCCTCAGCGGGCCGGTCAAAGCTCTCATTGCACAGGAGTGGAGCGAAAAGGCTGCATACCTTCTGGCCCTGGGGCTGCCCAGGCCAGAGTCGCCAAGTGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGAGGAGGGGCAGAGGAGGCAGAGCCAGAGGAGGAGTGGTGGGgtgagtctgttaatgggttggagcaactggtgggggagaaagggcaggac Alignment from Spaln_nt2Genome ACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCCGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGCTGGGTGCCTGAGAGGCCCGGGCCGGCGGAGGAGGAGGAGGGCGAGGGCGAGGGCGAGAGGGAGGGCATCCCGAACCGGCCTCGGAGGGGCCGAGACCATCGCCGCCACTACCAGGAGCGCTGGCGGCTGGAGTACCTCATGGAGCTGGACGGCTGCCGACGCGGCCTGGTGTGCATGGTGTGCGGGGGCGCGCTGGCCTCGCTCAAGATGAGCACCATCAAGCGAC-ACATCCGCCAGCGCCACCCCGGCTCCAACAGCCTCAGCGGGCCAGTCAAAGCTCTCATCGCCCAGGAGTGGAGCGAAAAGGCCGCACACCTGCTGGCCCTGGGGCTGCCCAGGCCGGAGTCGCCCAGCGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGGGGAGGGGCAGAGGAGGCGGAGCCAGAGGAGGAGTGGTGGG tcaacacagccagaaggctgagctcttctctctctcttctttgtcaccagACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCTGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGTTGGGTGTCTGAGAGGCCCGGGCCAGCGGAGGAGGAGGAGGGCGAGGGTGAGGGCGAGAGGGAGGGCATCCCAAACCGGCCTCGAAGGGGCCGAGACCATCGGCGCCACTACCAGGAGCGCTGGCGGCTAGAGTACCTCATGGAGCTGGATGGCTGCCGACGTGGCCTGGTATGTATGGTATGTGGGGGCGCCCTGGCCTCACTCAAGATGAGCACCATCAAGCGGCCACATCCGCCAGCGCCACCCCAGCTCCAACAGCCTCAGCGGGCCGGTCAAAGCTCTCATTGCACAGGAGTGGAGCGAAAAGGCTGCATACCTTCTGGCCCTGGGGCTGCCCAGGCCAGAGTCGCCAAGTGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGAGGAGGGGCAGAGGAGGCAGAGCCAGAGGAGGAGTGGTGGGgtgagtctgttaatgggttggagcaactggtgggggagaaagggcaggac Alignment from Pairagon ACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCCGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGCTGGGTGCCTGAGAGGCCCGGGCCGGCGGAGGAGGAGGAGGGCGAGGGCGAGGGCGAGAGGGAGGGCATCCCGAACCGGCCTCGGAGGGGCCGAGACCATCGCCGCCACTACCAGGAGCGCTGGCGGCTGGAGTACCTCATGGAGCTGGACGGCTGCCGACGCGGCCTGGTGTGCATGGTGTGCGGGGGCGCGCTGGCCTCGCTCAAGATGAGCACCATCAAGCGA-CACATCCGCCAGCGCCACCCCGGCTCCAACAGCCTCAGCGGGCCAGTCAAAGCTCTCATCGCCCAGGAGTGGAGCGAAAAGGCCGCACACCTGCTGGCCCTGGGGCTGCCCAGGCCGGAGTCGCCCAGCGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGGGGAGGGGCAGAGGAGGCGGAGCCAGAGGAGGAGTGGTGGG tcaacacagccagaaggctgagctcttctctctctcttctttgtcaccagACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCTGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGTTGGGTGTCTGAGAGGCCCGGGCCAGCGGAGGAGGAGGAGGGCGAGGGTGAGGGCGAGAGGGAGGGCATCCCAAACCGGCCTCGAAGGGGCCGAGACCATCGGCGCCACTACCAGGAGCGCTGGCGGCTAGAGTACCTCATGGAGCTGGATGGCTGCCGACGTGGCCTGGTATGTATGGTATGTGGGGGCGCCCTGGCCTCACTCAAGATGAGCACCATCAAGCGGCCACATCCGCCAGCGCCACCCCAGCTCCAACAGCCTCAGCGGGCCGGTCAAAGCTCTCATTGCACAGGAGTGGAGCGAAAAGGCTGCATACCTTCTGGCCCTGGGGCTGCCCAGGCCAGAGTCGCCAAGTGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGAGGAGGGGCAGAGGAGGCAGAGCCAGAGGAGGAGTGGTGGGgtgagtctgttaatgggttggagcaactggtgggggagaaagggcaggac Alignment from Exonerate_protein2genome ACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCCGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGCTGGGTGCCTGAGAGGCCCGGGCCGGCGGAGGAGGAGGAGGGCGAGGGCGAGGGCGAGAGGGAGGGCATCCCGAACCGGCCTCGGAGGGGCCGAGACCATCGCCGCCACTACCAGGAGCGCTGGCGGCTGGAGTACCTCATGGAGCTGGACGGCTGCCGACGCGGCCTGGTGTGCATGGTGTGCGGGGGCGCGCTGGCCTCGCTCAAGATGAGCACCATCAAGCGA-CACATCCGCCAGCGCCACCCCGGCTCCAACAGCCTCAGCGGGCCAGTCAAAGCTCTCATCGCCCAGGAGTGGAGCGAAAAGGCCGCACACCTGCTGGCCCTGGGGCTGCCCAGGCCGGAGTCGCCCAGCGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGGGGAGGGGCAGAGGAGGCGGAGCCAGAGGAGGAGTGGTGGG tcaacacagccagaaggctgagctcttctctctctcttctttgtcaccagACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCTGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGTTGGGTGTCTGAGAGGCCCGGGCCAGCGGAGGAGGAGGAGGGCGAGGGTGAGGGCGAGAGGGAGGGCATCCCAAACCGGCCTCGAAGGGGCCGAGACCATCGGCGCCACTACCAGGAGCGCTGGCGGCTAGAGTACCTCATGGAGCTGGATGGCTGCCGACGTGGCCTGGTATGTATGGTATGTGGGGGCGCCCTGGCCTCACTCAAGATGAGCACCATCAAGCGGCCACATCCGCCAGCGCCACCCCAGCTCCAACAGCCTCAGCGGGCCGGTCAAAGCTCTCATTGCACAGGAGTGGAGCGAAAAGGCTGCATACCTTCTGGCCCTGGGGCTGCCCAGGCCAGAGTCGCCAAGTGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGAGGAGGGGCAGAGGAGGCAGAGCCAGAGGAGGAGTGGTGGGgtgagtctgttaatgggttggagcaactggtgggggagaaagggcaggac Alignment from Exonerate_coding2genome ACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCCGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGCTGGGTGCCTGAGAGGCCCGGGCCGGCGGAGGAGGAGGAGGGCGAGGGCGAGGGCGAGAGGGAGGGCATCCCGAACCGGCCTCGGAGGGGCCGAGACCATCGCCGCCACTACCAGGAGCGCTGGCGGCTGGAGTACCTCATGGAGCTGGACGGCTGCCGACGCGGCCTGGTGTGCATGGTGTGCGGGGGCGCGCTGGCCTCGCTCAAGATGAGCACCATCAAGCGA-CACATCCGCCAGCGCCACCCCGGCTCCAACAGCCTCAGCGGGCCAGTCAAAGCTCTCATCGCCCAGGAGTGGAGCGAAAAGGCCGCACACCTGCTGGCCCTGGGGCTGCCCAGGCCGGAGTCGCCCAGCGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGGGGAGGGGCAGAGGAGGCGGAGCCAGAGGAGGAGTGGTGGG tcaacacagccagaaggctgagctcttctctctctcttctttgtcaccagACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCTGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGTTGGGTGTCTGAGAGGCCCGGGCCAGCGGAGGAGGAGGAGGGCGAGGGTGAGGGCGAGAGGGAGGGCATCCCAAACCGGCCTCGAAGGGGCCGAGACCATCGGCGCCACTACCAGGAGCGCTGGCGGCTAGAGTACCTCATGGAGCTGGATGGCTGCCGACGTGGCCTGGTATGTATGGTATGTGGGGGCGCCCTGGCCTCACTCAAGATGAGCACCATCAAGCGGCCACATCCGCCAGCGCCACCCCAGCTCCAACAGCCTCAGCGGGCCGGTCAAAGCTCTCATTGCACAGGAGTGGAGCGAAAAGGCTGCATACCTTCTGGCCCTGGGGCTGCCCAGGCCAGAGTCGCCAAGTGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGAGGAGGGGCAGAGGAGGCAGAGCCAGAGGAGGAGTGGTGGGgtgagtctgttaatgggttggagcaactggtgggggagaaagggcaggac Alignment from GeneWise ACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCCGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGCTGGGTGCCTGAGAGGCCCGGGCCGGCGGAGGAGGAGGAGGGCGAGGGCGAGGGCGAGAGGGAGGGCATCCCGAACCGGCCTCGGAGGGGCCGAGACCATCGCCGCCACTACCAGGAGCGCTGGCGGCTGGAGTACCTCATGGAGCTGGACGGCTGCCGACGCGGCCTGGTGTGCATGGTGTGCGGGGGCGCGCTGGCCTCGCTCAAGATGAGCACCATCAAG-CGACACATCCGCCAGCGCCACCCCGGCTCCAACAGCCTCAGCGGGCCAGTCAAAGCTCTCATCGCCCAGGAGTGGAGCGAAAAGGCCGCACACCTGCTGGCCCTGGGGCTGCCCAGGCCGGAGTCGCCCAGCGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGGGGAGGGGCAGAGGAGGCGGAGCCAGAGGAGGAGTGGTGGG tcaacacagccagaaggctgagctcttctctctctcttctttgtcaccagACGATGACCTCGTCCCCCAGGACCTGACCAGAAAGAGCCGGGACTCCGCCCCTGCTGCTGGAGCCCCCTCCTCTCAGGATCTCAGCCCCCCAGACGTAAAGGAAGAGGCTGGTTGGGTGTCTGAGAGGCCCGGGCCAGCGGAGGAGGAGGAGGGCGAGGGTGAGGGCGAGAGGGAGGGCATCCCAAACCGGCCTCGAAGGGGCCGAGACCATCGGCGCCACTACCAGGAGCGCTGGCGGCTAGAGTACCTCATGGAGCTGGATGGCTGCCGACGTGGCCTGGTATGTATGGTATGTGGGGGCGCCCTGGCCTCACTCAAGATGAGCACCATCAAGCGGCCACATCCGCCAGCGCCACCCCAGCTCCAACAGCCTCAGCGGGCCGGTCAAAGCTCTCATTGCACAGGAGTGGAGCGAAAAGGCTGCATACCTTCTGGCCCTGGGGCTGCCCAGGCCAGAGTCGCCAAGTGTCCCTGTCGCCCCCAGCACAGCTTCAGCCTCTGAGGAGGGAGGAGGGGCAGAGGAGGCAGAGCCAGAGGAGGAGTGGTGGGgtgagtctgttaatgggttggagcaactggtgggggagaaagggcaggac #### 9130011E15Rik_ID9675_6 --> 0 - 0 Original Alignment GTCACAGATAATATCAGCCAGAACACTATC-CTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aatgattcctaccaaaaataaaggaggaaccctatcttcttgcttgacagGTCACAGATAATATCAGCCAGAACACTATCCCTGGAATATGTAATGATCAACAGTATATTCGAAGCCATTTTACAGgtaagtttgactttctgatgacttttcttttttacatagtctatccctta Alignment from CESAR GTCACAGATAATATCAGCCAGAACACTATC-CTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aatgattcctaccaaaaataaaggaggaaccctatcttcttgcttgacagGTCACAGATAATATCAGCCAGAACACTATCCCTGGAATATGTAATGATCAACAGTATATTCGAAGCCATTTTACAGgtaagtttgactttctgatgacttttcttttttacatagtctatccctta Alignment from Spaln_aa2Genome GTCACAGATAATATCAGCCAGAACACTATC-CTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aatgattcctaccaaaaataaaggaggaaccctatcttcttgcttgacagGTCACAGATAATATCAGCCAGAACACTATCcCTGGAATATGTAATGATCAACAGTATATTCGAAGCCATTTTACAGgtaagtttgactttctgatgacttttcttttttacatagtctatccctta Alignment from Spaln_nt2Genome GTCACAGATAATATCAGCCAGAACACTAT-CCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aatgattcctaccaaaaataaaggaggaaccctatcttcttgcttgacagGTCACAGATAATATCAGCCAGAACACTATCCCTGGAATATGTAATGATCAACAGTATATTCGAAGCCATTTTACAGgtaagtttgactttctgatgacttttcttttttacatagtctatccctta Alignment from Pairagon GTCACAGATAATATCAGCCAGAACACTAT-CCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aatgattcctaccaaaaataaaggaggaaccctatcttcttgcttgacagGTCACAGATAATATCAGCCAGAACACTATCCCTGGAATATGTAATGATCAACAGTATATTCGAAGCCATTTTACAGgtaagtttgactttctgatgacttttcttttttacatagtctatccctta Alignment from Exonerate_protein2genome GTCACAGATAATATCAGCCAGAACACTATC-CTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aatgattcctaccaaaaataaaggaggaaccctatcttcttgcttgacagGTCACAGATAATATCAGCCAGAACACTATCCCTGGAATATGTAATGATCAACAGTATATTCGAAGCCATTTTACAGgtaagtttgactttctgatgacttttcttttttacatagtctatccctta Alignment from Exonerate_coding2genome GTCACAGATAATATCAGCCAGAACACTATC-CTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aatgattcctaccaaaaataaaggaggaaccctatcttcttgcttgacagGTCACAGATAATATCAGCCAGAACACTATCCCTGGAATATGTAATGATCAACAGTATATTCGAAGCCATTTTACAGgtaagtttgactttctgatgacttttcttttttacatagtctatccctta Alignment from GeneWise GTCACAGATAATATCAGCCAGAACACTATC-CTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aatgattcctaccaaaaataaaggaggaaccctatcttcttgcttgacagGTCACAGATAATATCAGCCAGAACACTATCCCTGGAATATGTAATGATCAACAGTATATTCGAAGCCATTTTACAGgtaagtttgactttctgatgacttttcttttttacatagtctatccctta #### A630007B06Rik_ID12190_7 --> 0 - 0 Original Alignment GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAA-GAGAAATCTGACCAGCTGGAG aaagctttgtttattgtccaagtaaaagtaatgaatctccttcccttaagGAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAACGAGAAATCTGACCAGCTGGAGgtaagcttagttcatccacactccctaatacatccagattgactgggctg Alignment from CESAR GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAA-GAGAAATCTGACCAGCTGGAG aaagctttgtttattgtccaagtaaaagtaatgaatctccttcccttaagGAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAACGAGAAATCTGACCAGCTGGAGgtaagcttagttcatccacactccctaatacatccagattgactgggctg Alignment from Spaln_aa2Genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAA-GAGAAATCTGACCAGCTGGAG aaagctttgtttattgtccaagtaaaagtaatgaatctccttcccttaagGAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAcGAGAAATCTGACCAGCTGGAGgtaagcttagttcatccacactccctaatacatccagattgactgggctg Alignment from Spaln_nt2Genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAA-GAGAAATCTGACCAGCTGGAG aaagctttgtttattgtccaagtaaaagtaatgaatctccttcccttaagGAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAACGAGAAATCTGACCAGCTGGAGgtaagcttagttcatccacactccctaatacatccagattgactgggctg Alignment from Pairagon GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAA-GAGAAATCTGACCAGCTGGAG aaagctttgtttattgtccaagtaaaagtaatgaatctccttcccttaagGAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAACGAGAAATCTGACCAGCTGGAGgtaagcttagttcatccacactccctaatacatccagattgactgggctg Alignment from Exonerate_protein2genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAA-GAGAAATCTGACCAGCTGGAG aaagctttgtttattgtccaagtaaaagtaatgaatctccttcccttaagGAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAACGAGAAATCTGACCAGCTGGAGgtaagcttagttcatccacactccctaatacatccagattgactgggctg Alignment from Exonerate_coding2genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAA-GAGAAATCTGACCAGCTGGAG aaagctttgtttattgtccaagtaaaagtaatgaatctccttcccttaagGAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAACGAGAAATCTGACCAGCTGGAGgtaagcttagttcatccacactccctaatacatccagattgactgggctg Alignment from GeneWise GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAA-GAGAAATCTGACCAGCTGGAG aaagctttgtttattgtccaagtaaaagtaatgaatctccttcccttaagGAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAACGAGAAATCTGACCAGCTGGAGgtaagcttagttcatccacactccctaatacatccagattgactgggctg #### AI846148_ID2142_4 --> 2 - 1 Original Alignment ttACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAAT-GAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAg aagagtgagtggcctgaaagtggtaaagcaaccataagtctccctttcagttACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGCCAGAGATGGAAAGAGTCCCCTGAGAATCGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAggtaaggggacttgggggtgctgtggctgtaatactggagcatgaagtcca Alignment from CESAR ttACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAAT-GAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAg aagagtgagtggcctgaaagtggtaaagcaaccataagtctccctttcagttACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGCCAGAGATGGAAAGAGTCCCCTGAGAATCGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAggtaaggggacttgggggtgctgtggctgtaatactggagcatgaagtcca Alignment from Spaln_aa2Genome TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAAT-GAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggcctgaaagtggtaaagcaaccataagtctccctttcagTTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGCCAGAGATGGAAAGAGTCCCCTGAGAATcGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAGgtaaggggacttgggggtgctgtggctgtaatactggagcatgaagtcca Alignment from Spaln_nt2Genome TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAAT-GAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggcctgaaagtggtaaagcaaccataagtctccctttcagTTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGCCAGAGATGGAAAGAGTCCCCTGAGAATCGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAGgtaaggggacttgggggtgctgtggctgtaatactggagcatgaagtcca Alignment from Pairagon TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAAT-GAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggcctgaaagtggtaaagcaaccataagtctccctttcagTTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGCCAGAGATGGAAAGAGTCCCCTGAGAATCGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAGgtaaggggacttgggggtgctgtggctgtaatactggagcatgaagtcca Alignment from Exonerate_protein2genome TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAAT-GAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggcctgaaagtggtaaagcaaccataagtctccctttcagTTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGCCAGAGATGGAAAGAGTCCCCTGAGAATCGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAGgtaaggggacttgggggtgctgtggctgtaatactggagcatgaagtcca Alignment from Exonerate_coding2genome TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAAT-GAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggcctgaaagtggtaaagcaaccataagtctccctttcagTTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGCCAGAGATGGAAAGAGTCCCCTGAGAATCGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAGgtaaggggacttgggggtgctgtggctgtaatactggagcatgaagtcca Alignment from GeneWise TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAAT-GAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggcctgaaagtggtaaagcaaccataagtctccctttcagTTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGCCAGAGATGGAAAGAGTCCCCTGAGAATCGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAGgtaaggggacttgggggtgctgtggctgtaatactggagcatgaagtcca #### AI846148_ID2143_3 --> 2 - 1 Original Alignment agTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAAC-CCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCg aagtgggagctgtggaggctctcaagcttgaccctatctcacactcctagagTCAGGCCAGGATGGCCAGCCAGATCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTAGATTCTGAGGACAACCCCATCCCTTCCTACGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAACTGCCCggtacgtcaccaaggaagctttggtttagtgggacatcctgtgctaagggg Alignment from CESAR agTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAAC-CCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCg aagtgggagctgtggaggctctcaagcttgaccctatctcacactcctagagTCAGGCCAGGATGGCCAGCCAGATCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTAGATTCTGAGGACAACCCCATCCCTTCCTACGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAACTGCCCggtacgtcaccaaggaagctttggtttagtgggacatcctgtgctaagggg Alignment from Spaln_aa2Genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAAC-CCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG aagtgggagctgtggaggctctcaagcttgaccctatctcacactcctagAGTCAGGCCAGGATGGCCAGCCAGATCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTAGATTCTGAGGACAACcCCATCCCTTCCTACGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAACTGCCCGgtacgtcaccaaggaagctttggtttagtgggacatcctgtgctaagggg Alignment from Spaln_nt2Genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAA-CCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG aagtgggagctgtggaggctctcaagcttgaccctatctcacactcctagAGTCAGGCCAGGATGGCCAGCCAGATCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTAGATTCTGAGGACAACCCCATCCCTTCCTACGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAACTGCCCGgtacgtcaccaaggaagctttggtttagtgggacatcctgtgctaagggg Alignment from Pairagon AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAA-CCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG aagtgggagctgtggaggctctcaagcttgaccctatctcacactcctagAGTCAGGCCAGGATGGCCAGCCAGATCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTAGATTCTGAGGACAACCCCATCCCTTCCTACGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAACTGCCCGgtacgtcaccaaggaagctttggtttagtgggacatcctgtgctaagggg Alignment from Exonerate_protein2genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAAC-CCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG aagtgggagctgtggaggctctcaagcttgaccctatctcacactcctagAGTCAGGCCAGGATGGCCAGCCAGATCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTAGATTCTGAGGACAACCCCATCCCTTCCTACGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAACTGCCCGgtacgtcaccaaggaagctttggtttagtgggacatcctgtgctaagggg Alignment from Exonerate_coding2genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAAC-CCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG aagtgggagctgtggaggctctcaagcttgaccctatctcacactcctagAGTCAGGCCAGGATGGCCAGCCAGATCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTAGATTCTGAGGACAACCCCATCCCTTCCTACGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAACTGCCCGgtacgtcaccaaggaagctttggtttagtgggacatcctgtgctaagggg Alignment from GeneWise AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCA-TCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG aagtgggagctgtggaggctctcaagcttgaccctatctcacactcctagAGTCAGGCCAGGATGGCCAGCCAGATCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTAGATTCTGAGGACAACCCCATCCCTTCCTACGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAACTGCCCGgtacgtcaccaaggaagctttggtttagtgggacatcctgtgctaagggg #### Abcc2_ID8821_5 --> 0 - 0 Original Alignment GATAGCAAGTCCAACATGACCTATTCC-TGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactccattttgtttgtttgtttgcaacattcttgttcccttttagGATAGCAAGTCCAACATGACCTATTCCCTGCCTGTTCTTCATCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGTGACTCAACACATgtaggtctctacatccattcattgcttatgttattataactggaggatgc Alignment from CESAR GATAGCAAGTCCAACATGACCTATTCC-TGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactccattttgtttgtttgtttgcaacattcttgttcccttttagGATAGCAAGTCCAACATGACCTATTCCCTGCCTGTTCTTCATCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGTGACTCAACACATgtaggtctctacatccattcattgcttatgttattataactggaggatgc Alignment from Spaln_aa2Genome GATAGCAAGTCCAACATGACCTATTCC-TGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactccattttgtttgtttgtttgcaacattcttgttcccttttagGATAGCAAGTCCAACATGACCTATTCCcTGCCTGTTCTTCATCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGTGACTCAACACATgtaggtctctacatccattcattgcttatgttattataactggaggatgc Alignment from Spaln_nt2Genome GATAGCAAGTCCAACATGACCTATT-CCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactccattttgtttgtttgtttgcaacattcttgttcccttttagGATAGCAAGTCCAACATGACCTATTCCCTGCCTGTTCTTCATCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGTGACTCAACACATgtaggtctctacatccattcattgcttatgttattataactggaggatgc Alignment from Pairagon GATAGCAAGTCCAACATGACCTATT-CCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactccattttgtttgtttgtttgcaacattcttgttcccttttagGATAGCAAGTCCAACATGACCTATTCCCTGCCTGTTCTTCATCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGTGACTCAACACATgtaggtctctacatccattcattgcttatgttattataactggaggatgc Alignment from Exonerate_protein2genome GATAGCAAGTCCAACATGACCTATTCC-TGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactccattttgtttgtttgtttgcaacattcttgttcccttttagGATAGCAAGTCCAACATGACCTATTCCCTGCCTGTTCTTCATCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGTGACTCAACACATgtaggtctctacatccattcattgcttatgttattataactggaggatgc Alignment from Exonerate_coding2genome GATAGCAAGTCCAACATGACCTATTCC-TGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactccattttgtttgtttgtttgcaacattcttgttcccttttagGATAGCAAGTCCAACATGACCTATTCCCTGCCTGTTCTTCATCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGTGACTCAACACATgtaggtctctacatccattcattgcttatgttattataactggaggatgc Alignment from GeneWise GATAGCAAGTCCAACATGACCTAT-TCCTGCCTGTTCTTCGTCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactccattttgtttgtttgtttgcaacattcttgttcccttttagGATAGCAAGTCCAACATGACCTATTCCCTGCCTGTTCTTCATCTCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGTGACTCAACACATgtaggtctctacatccattcattgcttatgttattataactggaggatgc #### Acsl5_ID11610_15 --> 2 - 0 Original Alignment gtCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTT-TCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccaacacactcttatttttctcaggtCATGTTGGTACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTCTCGGTAAACAACGAAGGTGAGgtaaaaaggtcttgtccagcacataggtaatggagatggagaagcttagt Alignment from CESAR gtCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTT-TCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccaacacactcttatttttctcaggtCATGTTGGTACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTCTCGGTAAACAACGAAGGTGAGgtaaaaaggtcttgtccagcacataggtaatggagatggagaagcttagt Alignment from Spaln_aa2Genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTAC-TTTTCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccaacacactcttatttttctcagGTCATGTTGGTACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACtTTCTCGGTAAACAACGAAGGTGAGgtaaaaaggtcttgtccagcacataggtaatggagatggagaagcttagt Alignment from Spaln_nt2Genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTT-TCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccaacacactcttatttttctcagGTCATGTTGGTACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTCTCGGTAAACAACGAAGGTGAGgtaaaaaggtcttgtccagcacataggtaatggagatggagaagcttagt Alignment from Pairagon GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTT-TCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccaacacactcttatttttctcagGTCATGTTGGTACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTCTCGGTAAACAACGAAGGTGAGgtaaaaaggtcttgtccagcacataggtaatggagatggagaagcttagt Alignment from Exonerate_protein2genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTAC-TTTTCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccaacacactcttatttttctcagGTCATGTTGGTACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTCTCGGTAAACAACGAAGGTGAGgtaaaaaggtcttgtccagcacataggtaatggagatggagaagcttagt Alignment from Exonerate_coding2genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTAC-TTTTCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccaacacactcttatttttctcagGTCATGTTGGTACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTCTCGGTAAACAACGAAGGTGAGgtaaaaaggtcttgtccagcacataggtaatggagatggagaagcttagt Alignment from GeneWise GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTT-TCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccaacacactcttatttttctcagGTCATGTTGGTACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTCTCGGTAAACAACGAAGGTGAGgtaaaaaggtcttgtccagcacataggtaatggagatggagaagcttagt #### Actn3_ID690_20 --> 0 - 0 Original Alignment GGAGAAGTGGAGTTT-GCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG ctctctcctttagcatctatgcacacaggttttctcccttctccacccagGGAGAAGTGGAGTTTCGCTCGTATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAAAGACTGCTGAGACAGACACAGCTGAACAAGTGGTGGCCTCCTTCAAAATCCTGGCAGGAGACAAGgtaagcctcacttgtgggaggggctgtaatgctaggacatgacccaagac Alignment from CESAR GGAGAAGTGGAGTTT-GCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG ctctctcctttagcatctatgcacacaggttttctcccttctccacccagGGAGAAGTGGAGTTTCGCTCGTATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAAAGACTGCTGAGACAGACACAGCTGAACAAGTGGTGGCCTCCTTCAAAATCCTGGCAGGAGACAAGgtaagcctcacttgtgggaggggctgtaatgctaggacatgacccaagac Alignment from Spaln_aa2Genome GTGGAGTTTGCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG ctctctcctttagcatctatgcacacaggttttctcccttctccacccagggagaagTGGAGTTTCGCTCGTATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAAAGACTGCTGAGACAGACACAGCTGAACAAGTGGTGGCCTCCTTCAAAATCCTGGCAGGAGACAAGgtaagcctcacttgtgggaggggctgtaatgctaggacatgacccaagac Alignment from Spaln_nt2Genome GGAGAAGTGGAGTTT-GCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG ctctctcctttagcatctatgcacacaggttttctcccttctccacccagGGAGAAGTGGAGTTTCGCTCGTATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAAAGACTGCTGAGACAGACACAGCTGAACAAGTGGTGGCCTCCTTCAAAATCCTGGCAGGAGACAAGgtaagcctcacttgtgggaggggctgtaatgctaggacatgacccaagac Alignment from Pairagon GGAGAAGTGGAGTTT-GCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG ctctctcctttagcatctatgcacacaggttttctcccttctccacccagGGAGAAGTGGAGTTTCGCTCGTATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAAAGACTGCTGAGACAGACACAGCTGAACAAGTGGTGGCCTCCTTCAAAATCCTGGCAGGAGACAAGgtaagcctcacttgtgggaggggctgtaatgctaggacatgacccaagac Alignment from Exonerate_protein2genome GGAGAAGTGGAG-TTTGCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG ctctctcctttagcatctatgcacacaggttttctcccttctccacccagGGAGAAGTGGAGTTTCGCTCGTATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAAAGACTGCTGAGACAGACACAGCTGAACAAGTGGTGGCCTCCTTCAAAATCCTGGCAGGAGACAAGgtaagcctcacttgtgggaggggctgtaatgctaggacatgacccaagac Alignment from Exonerate_coding2genome GGAGAAGTGGAG-TTTGCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG ctctctcctttagcatctatgcacacaggttttctcccttctccacccagGGAGAAGTGGAGTTTCGCTCGTATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAAAGACTGCTGAGACAGACACAGCTGAACAAGTGGTGGCCTCCTTCAAAATCCTGGCAGGAGACAAGgtaagcctcacttgtgggaggggctgtaatgctaggacatgacccaagac Alignment from GeneWise GTGGAGTTTGCTCGAATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAGAGACTGCCGAGACAGACACGGCTGAACAAGTGGTAGCCTCCTTCAAAATCCTGGCAGGAGACAAG ctctctcctttagcatctatgcacacaggttttctcccttctccacccagggagaagTGGAGTTTCGCTCGTATCATGACCATGGTGGACCCCAATGCAGCTGGGGTTGTGACCTTCCAAGCCTTCATTGACTTCATGACCCGAAAGACTGCTGAGACAGACACAGCTGAACAAGTGGTGGCCTCCTTCAAAATCCTGGCAGGAGACAAGgtaagcctcacttgtgggaggggctgtaatgctaggacatgacccaagac #### Actn3_ID691_19 --> 0 - 0 Original Alignment AAGCGGAATGGG-ATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gggcttggagacctgacctgatagccattttctttctccaccaccaccagAAGCGGAATGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtgagtgtcatgcccatttcagaagcatcatcagatcccctccttctgcc Alignment from CESAR AAGCGGAATGGG-ATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gggcttggagacctgacctgatagccattttctttctccaccaccaccagAAGCGGAATGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtgagtgtcatgcccatttcagaagcatcatcagatcccctccttctgcc Alignment from Spaln_aa2Genome AAGCGGAAT-GGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gggcttggagacctgacctgatagccattttctttctccaccaccaccagAAGCGGAATgGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtgagtgtcatgcccatttcagaagcatcatcagatcccctccttctgcc Alignment from Spaln_nt2Genome AAGCGGAATGGG-ATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gggcttggagacctgacctgatagccattttctttctccaccaccaccagAAGCGGAATGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtgagtgtcatgcccatttcagaagcatcatcagatcccctccttctgcc Alignment from Pairagon AAGCGGAATGGG-ATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gggcttggagacctgacctgatagccattttctttctccaccaccaccagAAGCGGAATGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtgagtgtcatgcccatttcagaagcatcatcagatcccctccttctgcc Alignment from Exonerate_protein2genome AAGCGGAAT-GGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gggcttggagacctgacctgatagccattttctttctccaccaccaccagAAGCGGAATGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtgagtgtcatgcccatttcagaagcatcatcagatcccctccttctgcc Alignment from Exonerate_coding2genome AAGCGGAAT-GGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gggcttggagacctgacctgatagccattttctttctccaccaccaccagAAGCGGAATGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtgagtgtcatgcccatttcagaagcatcatcagatcccctccttctgcc Alignment from GeneWise ---------------------------AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gggcttggagacctgacctgatagCCATTTTCTTTCTCCACCACCACCAGAAGCGGAATGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtgagtgtcatgcccatttcagaagcatcatcagatcccctccttctgcc #### Actn3_ID692_18 --> 0 - 0 Original Alignment CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAAC-GAATTCCGCGCCTCCTTCAACCACTTTGACCGG ctaacccaagacctggctactccctgacgaagcttggtaacattttatagCACATTCGTGTGGGCTGGGAGCAGCTGCTCACCTCTATTGCCCGCACCATCAATGAAGTTGAGAACCAGGTACTTACTAGAGATGCCAAGGGCTTGAGCCAGGAGCAGCTCAACCGAATTCCGCGCCTCCTTCAACCACTTTGACCGGgtaagggggggctaattcctgtgggctgacagacttgagggcaggtgggg Alignment from CESAR CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAAC-GAATTCCGCGCCTCCTTCAACCACTTTGACCGG ctaacccaagacctggctactccctgacgaagcttggtaacattttatagCACATTCGTGTGGGCTGGGAGCAGCTGCTCACCTCTATTGCCCGCACCATCAATGAAGTTGAGAACCAGGTACTTACTAGAGATGCCAAGGGCTTGAGCCAGGAGCAGCTCAACCGAATTCCGCGCCTCCTTCAACCACTTTGACCGGgtaagggggggctaattcctgtgggctgacagacttgagggcaggtgggg Alignment from Spaln_aa2Genome CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAAC-GAATTCCGCGCCTCCTTCAACCACTTTGACCGG ctaacccaagacctggctactccctgacgaagcttggtaacattttatagCACATTCGTGTGGGCTGGGAGCAGCTGCTCACCTCTATTGCCCGCACCATCAATGAAGTTGAGAACCAGGTACTTACTAGAGATGCCAAGGGCTTGAGCCAGGAGCAGCTCAACcGAATTCCGCGCCTCCTTCAACCACTTTGACCGGgtaagggggggctaattcctgtgggctgacagacttgagggcaggtgggg Alignment from Spaln_nt2Genome CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAA-CGAATTCCGCGCCTCCTTCAACCACTTTGACCGG ctaacccaagacctggctactccctgacgaagcttggtaacattttatagCACATTCGTGTGGGCTGGGAGCAGCTGCTCACCTCTATTGCCCGCACCATCAATGAAGTTGAGAACCAGGTACTTACTAGAGATGCCAAGGGCTTGAGCCAGGAGCAGCTCAACCGAATTCCGCGCCTCCTTCAACCACTTTGACCGGgtaagggggggctaattcctgtgggctgacagacttgagggcaggtgggg Alignment from Pairagon CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAA-CGAATTCCGCGCCTCCTTCAACCACTTTGACCGG ctaacccaagacctggctactccctgacgaagcttggtaacattttatagCACATTCGTGTGGGCTGGGAGCAGCTGCTCACCTCTATTGCCCGCACCATCAATGAAGTTGAGAACCAGGTACTTACTAGAGATGCCAAGGGCTTGAGCCAGGAGCAGCTCAACCGAATTCCGCGCCTCCTTCAACCACTTTGACCGGgtaagggggggctaattcctgtgggctgacagacttgagggcaggtgggg Alignment from Exonerate_protein2genome CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAAC-GAATTCCGCGCCTCCTTCAACCACTTTGACCGG ctaacccaagacctggctactccctgacgaagcttggtaacattttatagCACATTCGTGTGGGCTGGGAGCAGCTGCTCACCTCTATTGCCCGCACCATCAATGAAGTTGAGAACCAGGTACTTACTAGAGATGCCAAGGGCTTGAGCCAGGAGCAGCTCAACCGAATTCCGCGCCTCCTTCAACCACTTTGACCGGgtaagggggggctaattcctgtgggctgacagacttgagggcaggtgggg Alignment from Exonerate_coding2genome CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAAC-GAATTCCGCGCCTCCTTCAACCACTTTGACCGG ctaacccaagacctggctactccctgacgaagcttggtaacattttatagCACATTCGTGTGGGCTGGGAGCAGCTGCTCACCTCTATTGCCCGCACCATCAATGAAGTTGAGAACCAGGTACTTACTAGAGATGCCAAGGGCTTGAGCCAGGAGCAGCTCAACCGAATTCCGCGCCTCCTTCAACCACTTTGACCGGgtaagggggggctaattcctgtgggctgacagacttgagggcaggtgggg Alignment from GeneWise CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAAC-GAATTCCGCGCCTCCTTCAACCACTTTGACCGG ctaacccaagacctggctactccctgacgaagcttggtaacattttatagCACATTCGTGTGGGCTGGGAGCAGCTGCTCACCTCTATTGCCCGCACCATCAATGAAGTTGAGAACCAGGTACTTACTAGAGATGCCAAGGGCTTGAGCCAGGAGCAGCTCAACCGAATTCCGCGCCTCCTTCAACCACTTTGACCGGgtaagggggggctaattcctgtgggctgacagacttgagggcaggtgggg #### Actn3_ID693_17 --> 0 - 0 Original Alignment GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATC-ATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG ctggctcacaggggggtaagagtgcttaattcagtgtttttcctccacagGAAGTAGGACGGCTGGCAGCTGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAACATCCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaagatctcaccctcgggaaaaagggaagggaagcgatgacatctggag Alignment from CESAR GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATC-ATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG ctggctcacaggggggtaagagtgcttaattcagtgtttttcctccacagGAAGTAGGACGGCTGGCAGCTGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAACATCCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaagatctcaccctcgggaaaaagggaagggaagcgatgacatctggag Alignment from Spaln_aa2Genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATC-ATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG ctggctcacaggggggtaagagtgcttaattcagtgtttttcctccacagGAAGTAGGACGGCTGGCAGCTGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAACATCcATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaagatctcaccctcgggaaaaagggaagggaagcgatgacatctggag Alignment from Spaln_nt2Genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACAT-CATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG ctggctcacaggggggtaagagtgcttaattcagtgtttttcctccacagGAAGTAGGACGGCTGGCAGCTGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAACATCCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaagatctcaccctcgggaaaaagggaagggaagcgatgacatctggag Alignment from Pairagon GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACAT-CATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG ctggctcacaggggggtaagagtgcttaattcagtgtttttcctccacagGAAGTAGGACGGCTGGCAGCTGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAACATCCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaagatctcaccctcgggaaaaagggaagggaagcgatgacatctggag Alignment from Exonerate_protein2genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATC-ATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG ctggctcacaggggggtaagagtgcttaattcagtgtttttcctccacagGAAGTAGGACGGCTGGCAGCTGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAACATCCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaagatctcaccctcgggaaaaagggaagggaagcgatgacatctggag Alignment from Exonerate_coding2genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATC-ATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG ctggctcacaggggggtaagagtgcttaattcagtgtttttcctccacagGAAGTAGGACGGCTGGCAGCTGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAACATCCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaagatctcaccctcgggaaaaagggaagggaagcgatgacatctggag Alignment from GeneWise GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATC-ATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG ctggctcacaggggggtaagagtgcttaattcagtgtttttcctccacagGAAGTAGGACGGCTGGCAGCTGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAACATCCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaagatctcaccctcgggaaaaagggaagggaagcgatgacatctggag #### Actn3_ID695_15 --> 0 - 0 Original Alignment AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAG-AAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA ttccatctgtgataaatgggtatactgggtggcatctcttgtcttttaagAGCCTGCTAACAGCACATGAACAGTTCAAGGCAACATTGCCCGAGGCTGATCGAGAGCGAGGTGCCATCCTGGGCATCCAAGGAGAGATTCCGCAAGATTTGCCAAACATACGGGCTGCGGCCCAAGTCCGGCAACCCCTACATCACCCTCAGTTCACGGGACATCAACAATAAGTGGGATACGgtaaggataaccagcagccctgtgtggtccctacctattcttgcacattt Alignment from CESAR AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATC-CAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA ttccatctgtgataaatgggtatactgggtggcatctcttgtcttttaagAGCCTGCTAACAGCACATGAACAGTTCAAGGCAACATTGCCCGAGGCTGATCGAGAGCGAGGTGCCATCCTGGGCATCCAAGGAGAGATTCCGCAAGATTTGCCAAACATACGGGCTGCGGCCCAAGTCCGGCAACCCCTACATCACCCTCAGTTCACGGGACATCAACAATAAGTGGGATACGgtaaggataaccagcagccctgtgtggtccctacctattcttgcacattt Alignment from Spaln_aa2Genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATC-CAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA ttccatctgtgataaatgggtatactgggtggcatctcttgtcttttaagAGCCTGCTAACAGCACATGAACAGTTCAAGGCAACATTGCCCGAGGCTGATCGAGAGCGAGGTGCCATCCTGGGCATCCAAGGAGAGATTcCGCAAGATTTGCCAAACATACGGGCTGCGGCCCAAGTCCGGCAACCCCTACATCACCCTCAGTTCACGGGACATCAACAATAAGTGGGATACGgtaaggataaccagcagccctgtgtggtccctacctattcttgcacattt Alignment from Spaln_nt2Genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGA-TCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA ttccatctgtgataaatgggtatactgggtggcatctcttgtcttttaagAGCCTGCTAACAGCACATGAACAGTTCAAGGCAACATTGCCCGAGGCTGATCGAGAGCGAGGTGCCATCCTGGGCATCCAAGGAGAGATTCCGCAAGATTTGCCAAACATACGGGCTGCGGCCCAAGTCCGGCAACCCCTACATCACCCTCAGTTCACGGGACATCAACAATAAGTGGGATACGgtaaggataaccagcagccctgtgtggtccctacctattcttgcacattt Alignment from Pairagon AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAG-AAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA ttccatctgtgataaatgggtatactgggtggcatctcttgtcttttaagAGCCTGCTAACAGCACATGAACAGTTCAAGGCAACATTGCCCGAGGCTGATCGAGAGCGAGGTGCCATCCTGGGCATCCAAGGAGAGATTCCGCAAGATTTGCCAAACATACGGGCTGCGGCCCAAGTCCGGCAACCCCTACATCACCCTCAGTTCACGGGACATCAACAATAAGTGGGATACGgtaaggataaccagcagccctgtgtggtccctacctattcttgcacattt Alignment from Exonerate_protein2genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATC-CAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA ttccatctgtgataaatgggtatactgggtggcatctcttgtcttttaagAGCCTGCTAACAGCACATGAACAGTTCAAGGCAACATTGCCCGAGGCTGATCGAGAGCGAGGTGCCATCCTGGGCATCCAAGGAGAGATTCCGCAAGATTTGCCAAACATACGGGCTGCGGCCCAAGTCCGGCAACCCCTACATCACCCTCAGTTCACGGGACATCAACAATAAGTGGGATACGgtaaggataaccagcagccctgtgtggtccctacctattcttgcacattt Alignment from Exonerate_coding2genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATC-CAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA ttccatctgtgataaatgggtatactgggtggcatctcttgtcttttaagAGCCTGCTAACAGCACATGAACAGTTCAAGGCAACATTGCCCGAGGCTGATCGAGAGCGAGGTGCCATCCTGGGCATCCAAGGAGAGATTCCGCAAGATTTGCCAAACATACGGGCTGCGGCCCAAGTCCGGCAACCCCTACATCACCCTCAGTTCACGGGACATCAACAATAAGTGGGATACGgtaaggataaccagcagccctgtgtggtccctacctattcttgcacattt Alignment from GeneWise AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATC-CAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA ttccatctgtgataaatgggtatactgggtggcatctcttgtcttttaagAGCCTGCTAACAGCACATGAACAGTTCAAGGCAACATTGCCCGAGGCTGATCGAGAGCGAGGTGCCATCCTGGGCATCCAAGGAGAGATTCCGCAAGATTTGCCAAACATACGGGCTGCGGCCCAAGTCCGGCAACCCCTACATCACCCTCAGTTCACGGGACATCAACAATAAGTGGGATACGgtaaggataaccagcagccctgtgtggtccctacctattcttgcacattt #### Actn3_ID696_14 --> 0 - 0 Original Alignment AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAAC-TGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aaggccagcaggctgggaaggatctgataatgctgttcttcttgctacagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGCCGGGCAGCCCCCTTCAATAACCTGGTTGGATGGGGCTATTGAGGACCTGCACGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAGgtaagggaaggtattagggggaagcttgggatgcactgtatgtgatgaaa Alignment from CESAR AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAAC-TGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aaggccagcaggctgggaaggatctgataatgctgttcttcttgctacagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGCCGGGCAGCCCCCTTCAATAACCTGGTTGGATGGGGCTATTGAGGACCTGCACGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAGgtaagggaaggtattagggggaagcttgggatgcactgtatgtgatgaaa Alignment from Spaln_aa2Genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAAC-TGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aaggccagcaggctgggaaggatctgataatgctgttcttcttgctacagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGCCGGGCAGCCCCCTTCAATAACcTGGTTGGATGGGGCTATTGAGGACCTGCACGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAGgtaagggaaggtattagggggaagcttgggatgcactgtatgtgatgaaa Alignment from Spaln_nt2Genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAA-CTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aaggccagcaggctgggaaggatctgataatgctgttcttcttgctacagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGCCGGGCAGCCCCCTTCAATAACCTGGTTGGATGGGGCTATTGAGGACCTGCACGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAGgtaagggaaggtattagggggaagcttgggatgcactgtatgtgatgaaa Alignment from Pairagon AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAA-CTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aaggccagcaggctgggaaggatctgataatgctgttcttcttgctacagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGCCGGGCAGCCCCCTTCAATAACCTGGTTGGATGGGGCTATTGAGGACCTGCACGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAGgtaagggaaggtattagggggaagcttgggatgcactgtatgtgatgaaa Alignment from Exonerate_protein2genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAAC-TGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aaggccagcaggctgggaaggatctgataatgctgttcttcttgctacagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGCCGGGCAGCCCCCTTCAATAACCTGGTTGGATGGGGCTATTGAGGACCTGCACGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAGgtaagggaaggtattagggggaagcttgggatgcactgtatgtgatgaaa Alignment from Exonerate_coding2genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAAC-TGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aaggccagcaggctgggaaggatctgataatgctgttcttcttgctacagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGCCGGGCAGCCCCCTTCAATAACCTGGTTGGATGGGGCTATTGAGGACCTGCACGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAGgtaagggaaggtattagggggaagcttgggatgcactgtatgtgatgaaa Alignment from GeneWise AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAAT-AACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aaggccagcaggctgggaaggatctgataatgctgttcttcttgctacagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGCCGGGCAGCCCCCTTCAATAACCTGGTTGGATGGGGCTATTGAGGACCTGCACGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAGgtaagggaaggtattagggggaagcttgggatgcactgtatgtgatgaaa #### Actn3_ID700_10 --> 0 - 0 Original Alignment CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCC-ATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agatgggtggatcaggtcagctcagaactttccaacttttctctgcttagCTGTTGGAGTGGATCCGCCGGACTGTCCCATGGCTAGAGAACCGCGTGGCTGAACCCAGCATGAGTGCCCATGCAGCGCAAGCTAGAGGACTTCCGAGACTATCGACACCTGCACAAGCCTCCCCGTGTACAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACACTGCAGACCAAGTCGCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGCTGGTTTCAgtgagttcagctgggcatgttgggtgctctagctttgcccatatgtcctg Alignment from CESAR CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCC-ATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agatgggtggatcaggtcagctcagaactttccaacttttctctgcttagCTGTTGGAGTGGATCCGCCGGACTGTCCCATGGCTAGAGAACCGCGTGGCTGAACCCAGCATGAGTGCCCATGCAGCGCAAGCTAGAGGACTTCCGAGACTATCGACACCTGCACAAGCCTCCCCGTGTACAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACACTGCAGACCAAGTCGCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGCTGGTTTCAgtgagttcagctgggcatgttgggtgctctagctttgcccatatgtcctg Alignment from Spaln_aa2Genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCC-ATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agatgggtggatcaggtcagctcagaactttccaacttttctctgcttagCTGTTGGAGTGGATCCGCCGGACTGTCCCATGGCTAGAGAACCGCGTGGCTGAACCCAGCATGAGTGCCcATGCAGCGCAAGCTAGAGGACTTCCGAGACTATCGACACCTGCACAAGCCTCCCCGTGTACAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACACTGCAGACCAAGTCGCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGCTGGTTTCAgtgagttcagctgggcatgttgggtgctctagctttgcccatatgtcctg Alignment from Spaln_nt2Genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTG-CCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agatgggtggatcaggtcagctcagaactttccaacttttctctgcttagCTGTTGGAGTGGATCCGCCGGACTGTCCCATGGCTAGAGAACCGCGTGGCTGAACCCAGCATGAGTGCCCATGCAGCGCAAGCTAGAGGACTTCCGAGACTATCGACACCTGCACAAGCCTCCCCGTGTACAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACACTGCAGACCAAGTCGCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGCTGGTTTCAgtgagttcagctgggcatgttgggtgctctagctttgcccatatgtcctg Alignment from Pairagon CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTG-CCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agatgggtggatcaggtcagctcagaactttccaacttttctctgcttagCTGTTGGAGTGGATCCGCCGGACTGTCCCATGGCTAGAGAACCGCGTGGCTGAACCCAGCATGAGTGCCCATGCAGCGCAAGCTAGAGGACTTCCGAGACTATCGACACCTGCACAAGCCTCCCCGTGTACAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACACTGCAGACCAAGTCGCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGCTGGTTTCAgtgagttcagctgggcatgttgggtgctctagctttgcccatatgtcctg Alignment from Exonerate_protein2genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCC-ATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agatgggtggatcaggtcagctcagaactttccaacttttctctgcttagCTGTTGGAGTGGATCCGCCGGACTGTCCCATGGCTAGAGAACCGCGTGGCTGAACCCAGCATGAGTGCCCATGCAGCGCAAGCTAGAGGACTTCCGAGACTATCGACACCTGCACAAGCCTCCCCGTGTACAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACACTGCAGACCAAGTCGCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGCTGGTTTCAgtgagttcagctgggcatgttgggtgctctagctttgcccatatgtcctg Alignment from Exonerate_coding2genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCC-ATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agatgggtggatcaggtcagctcagaactttccaacttttctctgcttagCTGTTGGAGTGGATCCGCCGGACTGTCCCATGGCTAGAGAACCGCGTGGCTGAACCCAGCATGAGTGCCCATGCAGCGCAAGCTAGAGGACTTCCGAGACTATCGACACCTGCACAAGCCTCCCCGTGTACAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACACTGCAGACCAAGTCGCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGCTGGTTTCAgtgagttcagctgggcatgttgggtgctctagctttgcccatatgtcctg Alignment from GeneWise CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGT-GCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agatgggtggatcaggtcagctcagaactttccaacttttctctgcttagCTGTTGGAGTGGATCCGCCGGACTGTCCCATGGCTAGAGAACCGCGTGGCTGAACCCAGCATGAGTGCCCATGCAGCGCAAGCTAGAGGACTTCCGAGACTATCGACACCTGCACAAGCCTCCCCGTGTACAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACACTGCAGACCAAGTCGCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGCTGGTTTCAgtgagttcagctgggcatgttgggtgctctagctttgcccatatgtcctg #### Actn3_ID704_6 --> 1 - 0 Original Alignment cTGGAAGGATGGCCTGGCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTAT-GCCAAGCTTCGCAAG ggacatgcctgcagtgaaccagggcctgtcttgctttccctcccttgcagcTGGAAGGATGGCCTGGCCCTTTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATCGCCAAGCTTCGCAAGgtatcttgcgcctctacaactcacagacccaactctatagtctctgccct Alignment from CESAR cTGGAAGGATGGCCTGGCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTAT-GCCAAGCTTCGCAAG ggacatgcctgcagtgaaccagggcctgtcttgctttccctcccttgcagcTGGAAGGATGGCCTGGCCCTTTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATCGCCAAGCTTCGCAAGgtatcttgcgcctctacaactcacagacccaactctatagtctctgccct Alignment from Spaln_aa2Genome CTGGAAGGATGGCCTGGCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTAT-GCCAAGCTTCGCAAG ggacatgcctgcagtgaaccagggcctgtcttgctttccctcccttgcagCTGGAAGGATGGCCTGGCCCTTTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATcGCCAAGCTTCGCAAGgtatcttgcgcctctacaactcacagacccaactctatagtctctgccct Alignment from Spaln_nt2Genome CTGGAAGGATGGCCTGGCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTAT-GCCAAGCTTCGCAAG ggacatgcctgcagtgaaccagggcctgtcttgctttccctcccttgcagCTGGAAGGATGGCCTGGCCCTTTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATCGCCAAGCTTCGCAAGgtatcttgcgcctctacaactcacagacccaactctatagtctctgccct Alignment from Pairagon CTGGAAGGATGGCCTGGCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTAT-GCCAAGCTTCGCAAG ggacatgcctgcagtgaaccagggcctgtcttgctttccctcccttgcagCTGGAAGGATGGCCTGGCCCTTTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATCGCCAAGCTTCGCAAGgtatcttgcgcctctacaactcacagacccaactctatagtctctgccct Alignment from Exonerate_protein2genome CTGGAAGGATGGCCTGGCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTAT-GCCAAGCTTCGCAAG ggacatgcctgcagtgaaccagggcctgtcttgctttccctcccttgcagCTGGAAGGATGGCCTGGCCCTTTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATCGCCAAGCTTCGCAAGgtatcttgcgcctctacaactcacagacccaactctatagtctctgccct Alignment from Exonerate_coding2genome CTGGAAGGATGGCCTGGCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTAT-GCCAAGCTTCGCAAG ggacatgcctgcagtgaaccagggcctgtcttgctttccctcccttgcagCTGGAAGGATGGCCTGGCCCTTTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATCGCCAAGCTTCGCAAGgtatcttgcgcctctacaactcacagacccaactctatagtctctgccct Alignment from GeneWise CTGGAAGGATGGCCTGGCCCTCTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTAT-GCCAAGCTTCGCAAG ggacatgcctgcagtgaaccagggcctgtcttgctttccctcccttgcagCTGGAAGGATGGCCTGGCCCTTTGTGCTCTCATCCACCGTCACCGGCCAGACCTCATTGACTATCGCCAAGCTTCGCAAGgtatcttgcgcctctacaactcacagacccaactctatagtctctgccct #### Actn3_ID705_5 --> 2 - 2 Original Alignment agACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGC-AATGTCAACGTACAGAACTTCCATACCag cagactctttcccacttctcagctaacataccctgattacgatggtgcagagACCTCATCCAAAGAAGGCTTGCTCCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCCAATGTCAATGTACAGAACTTCCATACTaggtactgttgatgggctccagaggacacaagtgaggtgtaggctggcccca Alignment from CESAR agACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGC-AATGTCAACGTACAGAACTTCCATACCag cagactctttcccacttctcagctaacataccctgattacgatggtgcagagACCTCATCCAAAGAAGGCTTGCTCCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCCAATGTCAATGTACAGAACTTCCATACTaggtactgttgatgggctccagaggacacaagtgaggtgtaggctggcccca Alignment from Spaln_aa2Genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGC-AATGTCAACGTACAGAACTTCCATACCAG cagactctttcccacttctcagctaacataccctgattacgatggtgcagAGACCTCATCCAAAGAAGGCTTGCTCCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCcAATGTCAATGTACAGAACTTCCATACTAGgtactgttgatgggctccagaggacacaagtgaggtgtaggctggcccca Alignment from Spaln_nt2Genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCG-CAATGTCAACGTACAGAACTTCCATACCAG cagactctttcccacttctcagctaacataccctgattacgatggtgcagAGACCTCATCCAAAGAAGGCTTGCTCCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCCAATGTCAATGTACAGAACTTCCATACTAGgtactgttgatgggctccagaggacacaagtgaggtgtaggctggcccca Alignment from Pairagon AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCG-CAATGTCAACGTACAGAACTTCCATACCAG cagactctttcccacttctcagctaacataccctgattacgatggtgcagAGACCTCATCCAAAGAAGGCTTGCTCCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCCAATGTCAATGTACAGAACTTCCATACTAGgtactgttgatgggctccagaggacacaagtgaggtgtaggctggcccca Alignment from Exonerate_protein2genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGC-AATGTCAACGTACAGAACTTCCATACCAG cagactctttcccacttctcagctaacataccctgattacgatggtgcagAGACCTCATCCAAAGAAGGCTTGCTCCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCCAATGTCAATGTACAGAACTTCCATACTAGgtactgttgatgggctccagaggacacaagtgaggtgtaggctggcccca Alignment from Exonerate_coding2genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGC-AATGTCAACGTACAGAACTTCCATACCAG cagactctttcccacttctcagctaacataccctgattacgatggtgcagAGACCTCATCCAAAGAAGGCTTGCTCCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCCAATGTCAATGTACAGAACTTCCATACTAGgtactgttgatgggctccagaggacacaagtgaggtgtaggctggcccca Alignment from GeneWise AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTAC-CGCAATGTCAACGTACAGAACTTCCATACCAG cagactctttcccacttctcagctaacataccctgattacgatggtgcagAGACCTCATCCAAAGAAGGCTTGCTCCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCCAATGTCAATGTACAGAACTTCCATACTAGgtactgttgatgggctccagaggacacaagtgaggtgtaggctggcccca #### Actr1a_ID9872_8 --> 0 - 1 Original Alignment ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGG-CGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAg ggggacctcagtcccagcccaacctcctgattggctgatatctttcttagATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGTTGTTCAGGCCGGACTTGATTGGTGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAggtgagcatttccacttgtgaccctacagggattggccccccacagaaatc Alignment from CESAR ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGG-CGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAg ggggacctcagtcccagcccaacctcctgattggctgatatctttcttagATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGTTGTTCAGGCCGGACTTGATTGGTGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAggtgagcatttccacttgtgaccctacagggattggccccccacagaaatc Alignment from Spaln_aa2Genome ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGG-CGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAG ggggacctcagtcccagcccaacctcctgattggctgatatctttcttagATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGTTGTTCAGGCCGGACTTGATTGGTGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGcCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAGgtgagcatttccacttgtgaccctacagggattggccccccacagaaatc Alignment from Spaln_nt2Genome ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGG-CGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAG ggggacctcagtcccagcccaacctcctgattggctgatatctttcttagATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGTTGTTCAGGCCGGACTTGATTGGTGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAGgtgagcatttccacttgtgaccctacagggattggccccccacagaaatc Alignment from Pairagon ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGG-CGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAG ggggacctcagtcccagcccaacctcctgattggctgatatctttcttagATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGTTGTTCAGGCCGGACTTGATTGGTGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAGgtgagcatttccacttgtgaccctacagggattggccccccacagaaatc Alignment from Exonerate_protein2genome ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGG-CGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAG ggggacctcagtcccagcccaacctcctgattggctgatatctttcttagATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGTTGTTCAGGCCGGACTTGATTGGTGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAGgtgagcatttccacttgtgaccctacagggattggccccccacagaaatc Alignment from Exonerate_coding2genome ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGG-CGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAG ggggacctcagtcccagcccaacctcctgattggctgatatctttcttagATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGTTGTTCAGGCCGGACTTGATTGGTGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAGgtgagcatttccacttgtgaccctacagggattggccccccacagaaatc Alignment from GeneWise ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGG-CGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAG ggggacctcagtcccagcccaacctcctgattggctgatatctttcttagATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGTTGTTCAGGCCGGACTTGATTGGTGAGGAGAGTGAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAGgtgagcatttccacttgtgaccctacagggattggccccccacagaaatc #### Acy3_ID248_2 --> 1 - 0 Original Alignment tTCCACCGCTACCCCTGATGACCCCTATGAAGTGAAAAGAGCCCGAGAGTTGAACCAGCTGCTGGGTCCCAAGGGCACAGGCCAGGCT-TTTGACTTTACCCTAGACCTGCACAACACCACAGCAAACACTGGAGTCTGCCTCATCTCTGAATCCAACATCTCCTTCAACTTGCACCTGTGCCACTACCTACAG gactgggatgattgggactgatgtcccctgtgtgttgtctgtttttgaagtTCCACTGCCACCCCTGATGACCCCTATGAAGTGAAAAGAGCCCGAGAGTTGAACCAGCTGCTGGGTCCCAAGGGTACAGGCAAGGCTCTTTGACTTTACCCTAGACCTGCACAACACCACAGCAAACACTGGAGTCTGCCTCATCTCTGAATCCAACATCTCCTTCAACTTGCACCTGTGCCAATACCTACAGgtgatacctagggggaaggaaggagggcagggatggagcagtagagggac Alignment from CESAR tTCCACCGCTACCCCTGATGACCCCTATGAAGTGAAAAGAGCCCGAGAGTTGAACCAGCTGCTGGGTCCCAAGGGCACAGGCCAGGCT-TTTGACTTTACCCTAGACCTGCACAACACCACAGCAAACACTGGAGTCTGCCTCATCTCTGAATCCAACATCTCCTTCAACTTGCACCTGTGCCACTACCTACAG gactgggatgattgggactgatgtcccctgtgtgttgtctgtttttgaagtTCCACTGCCACCCCTGATGACCCCTATGAAGTGAAAAGAGCCCGAGAGTTGAACCAGCTGCTGGGTCCCAAGGGTACAGGCAAGGCTCTTTGACTTTACCCTAGACCTGCACAACACCACAGCAAACACTGGAGTCTGCCTCATCTCTGAATCCAACATCTCCTTCAACTTGCACCTGTGCCAATACCTACAGgtgatacctagggggaaggaaggagggcagggatggagcagtagagggac Alignment from Spaln_aa2Genome TTCCACCGCTACCCCTGATGACCCCTATGAAGTGAAAAGAGCCCGAGAGTTGAACCAGCTGCTGGGTCCCAAGGGCACAGGCCAGGCT-TTTGACTTTACCCTAGACCTGCACAACACCACAGCAAACACTGGAGTCTGCCTCATCTCTGAATCCAACATCTCCTTCAACTTGCACCTGTGCCACTACCTACAG gactgggatgattgggactgatgtcccctgtgtgttgtctgtttttgaagTTCCACTGCCACCCCTGATGACCCCTATGAAGTGAAAAGAGCCCGAGAGTTGAACCAGCTGCTGGGTCCCAAGGGTACAGGCAAGGCTcTTTGACTTTACCCTAGACCTGCACAACACCACAGCAAACACTGGAGTCTGCCTCATCTCTGAATCCAACATCTCCTTCAACTTGCACCTGTGCCAATACCTACAGgtgatacctagggggaaggaaggagggcagggatggagcagtagagggac Alignment from Spaln_nt2Genome TTCCACCGCTACCCCTGATGACCCCTATGAAGTGAAAAGAGCCCGAGAGTTGAACCAGCTGCTGGGTCCCAAGGGCACAGGCCAGGCT-TTTGACTTTACCCTAGACCTGCACAACACCACAGCAAACACTGGAGTCTGCCTCATCTCTGAATCCAACATCTCCTTCAACTTGCACCTGTGCCACTACCTACAG gactgggatgattgggactgatgtcccctgtgtgttgtctgtttttgaagTTCCACTGCCACCCCTGATGACCCCTATGAAGTGAAAAGAGCCCGAGAGTTGAACCAGCTGCTGGGTCCCAAGGGTACAGGCAAGGCTCTTTGACTTTACCCTAGACCTGCACAACACCACAGCAAACACTGGAGTCTGCCTCATCTCTGAATCCAACATCTCCTTCAACTTGCACCTGTGCCAATACCTACAGgtgatacctagggggaaggaaggagggcagggatggagcagtagagggac Alignment from Pairagon TTCCACCGCTACCCCTGATGACCCCTATGAAGTGAAAAGAGCCCGAGAGTTGAACCAGCTGCTGGGTCCCAAGGGCACAGGCCAGGCT-TTTGACTTTACCCTAGACCTGCACAACACCACAGCAAACACTGGAGTCTGCCTCATCTCTGAATCCAACATCTCCTTCAACTTGCACCTGTGCCACTACCTACAG gactgggatgattgggactgatgtcccctgtgtgttgtctgtttttgaagTTCCACTGCCACCCCTGATGACCCCTATGAAGTGAAAAGAGCCCGAGAGTTGAACCAGCTGCTGGGTCCCAAGGGTACAGGCAAGGCTCTTTGACTTTACCCTAGACCTGCACAACACCACAGCAAACACTGGAGTCTGCCTCATCTCTGAATCCAACATCTCCTTCAACTTGCACCTGTGCCAATACCTACAGgtgatacctagggggaaggaaggagggcagggatggagcagtagagggac Alignment from Exonerate_protein2genome TTCCACCGCTACCCCTGATGACCCCTATGAAGTGAAAAGAGCCCGAGAGTTGAACCAGCTGCTGGGTCCCAAGGGCACAGGCCAGGCT-TTTGACTTTACCCTAGACCTGCACAACACCACAGCAAACACTGGAGTCTGCCTCATCTCTGAATCCAACATCTCCTTCAACTTGCACCTGTGCCACTACCTACAG gactgggatgattgggactgatgtcccctgtgtgttgtctgtttttgaagTTCCACTGCCACCCCTGATGACCCCTATGAAGTGAAAAGAGCCCGAGAGTTGAACCAGCTGCTGGGTCCCAAGGGTACAGGCAAGGCTCTTTGACTTTACCCTAGACCTGCACAACACCACAGCAAACACTGGAGTCTGCCTCATCTCTGAATCCAACATCTCCTTCAACTTGCACCTGTGCCAATACCTACAGgtgatacctagggggaaggaaggagggcagggatggagcagtagagggac Alignment from Exonerate_coding2genome TTCCACCGCTACCCCTGATGACCCCTATGAAGTGAAAAGAGCCCGAGAGTTGAACCAGCTGCTGGGTCCCAAGGGCACAGGCCAGGCT-TTTGACTTTACCCTAGACCTGCACAACACCACAGCAAACACTGGAGTCTGCCTCATCTCTGAATCCAACATCTCCTTCAACTTGCACCTGTGCCACTACCTACAG gactgggatgattgggactgatgtcccctgtgtgttgtctgtttttgaagTTCCACTGCCACCCCTGATGACCCCTATGAAGTGAAAAGAGCCCGAGAGTTGAACCAGCTGCTGGGTCCCAAGGGTACAGGCAAGGCTCTTTGACTTTACCCTAGACCTGCACAACACCACAGCAAACACTGGAGTCTGCCTCATCTCTGAATCCAACATCTCCTTCAACTTGCACCTGTGCCAATACCTACAGgtgatacctagggggaaggaaggagggcagggatggagcagtagagggac Alignment from GeneWise TTCCACCGCTACCCCTGATGACCCCTATGAAGTGAAAAGAGCCCGAGAGTTGAACCAGCTGCTGGGTCCCAAGGGCACAGGCCAG-GCTTTTGACTTTACCCTAGACCTGCACAACACCACAGCAAACACTGGAGTCTGCCTCATCTCTGAATCCAACATCTCCTTCAACTTGCACCTGTGCCACTACCTACAG gactgggatgattgggactgatgtcccctgtgtgttgtctgtttttgaagTTCCACTGCCACCCCTGATGACCCCTATGAAGTGAAAAGAGCCCGAGAGTTGAACCAGCTGCTGGGTCCCAAGGGTACAGGCAAGGCTCTTTGACTTTACCCTAGACCTGCACAACACCACAGCAAACACTGGAGTCTGCCTCATCTCTGAATCCAACATCTCCTTCAACTTGCACCTGTGCCAATACCTACAGgtgatacctagggggaaggaaggagggcagggatggagcagtagagggac #### Acy3_ID250_4 --> 2 - 1 Original Alignment gtCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAG-CTCTTCAACCAAg atggctaagcccaggctgtttgcctgtcaatatctcttctttcctccaaggtCTGGAGATGGGCCCACAGCCTCAGGGTGTGCTGCGGGCTGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATTGAGCCTCTTCAACCAAggtaataccctccagtagcttgtcaggaaaactgatctgaggaaagggttg Alignment from CESAR gtCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAG-CTCTTCAACCAAg atggctaagcccaggctgtttgcctgtcaatatctcttctttcctccaaggtCTGGAGATGGGCCCACAGCCTCAGGGTGTGCTGCGGGCTGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATTGAGCCTCTTCAACCAAggtaataccctccagtagcttgtcaggaaaactgatctgaggaaagggttg Alignment from Spaln_aa2Genome GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAG-CTCTTCAACCAAG atggctaagcccaggctgtttgcctgtcaatatctcttctttcctccaagGTCTGGAGATGGGCCCACAGCCTCAGGGTGTGCTGCGGGCTGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATTGAGcCTCTTCAACCAAGgtaataccctccagtagcttgtcaggaaaactgatctgaggaaagggttg Alignment from Spaln_nt2Genome GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGC-TCTTCAACCAAG atggctaagcccaggctgtttgcctgtcaatatctcttctttcctccaagGTCTGGAGATGGGCCCACAGCCTCAGGGTGTGCTGCGGGCTGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATTGAGCCTCTTCAACCAAGgtaataccctccagtagcttgtcaggaaaactgatctgaggaaagggttg Alignment from Pairagon GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAG-CTCTTCAACCAAG atggctaagcccaggctgtttgcctgtcaatatctcttctttcctccaagGTCTGGAGATGGGCCCACAGCCTCAGGGTGTGCTGCGGGCTGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATTGAGCCTCTTCAACCAAGgtaataccctccagtagcttgtcaggaaaactgatctgaggaaagggttg Alignment from Exonerate_protein2genome GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAG-CTCTTCAACCAAG atggctaagcccaggctgtttgcctgtcaatatctcttctttcctccaagGTCTGGAGATGGGCCCACAGCCTCAGGGTGTGCTGCGGGCTGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATTGAGCCTCTTCAACCAAGgtaataccctccagtagcttgtcaggaaaactgatctgaggaaagggttg Alignment from Exonerate_coding2genome GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAG-CTCTTCAACCAAG atggctaagcccaggctgtttgcctgtcaatatctcttctttcctccaagGTCTGGAGATGGGCCCACAGCCTCAGGGTGTGCTGCGGGCTGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATTGAGCCTCTTCAACCAAGgtaataccctccagtagcttgtcaggaaaactgatctgaggaaagggttg Alignment from GeneWise GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAA-- atggctaagcccaggctgtttgcctgtcaatatctcttctttcctccaagGTCTGGAGATGGGCCCACAGCCTCAGGGTGTGCTGCGGGCTGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATTGAGCCTCTTCAACCAAGgtaataccctccagtagcttgtcaggaaaactgatctgaggaaagggttg #### Add3_ID11215_7 --> 0 - 0 Original Alignment GTGCTCGTCCTCAGG-AACCATGGCATGGTGGCTCTTGGCGAGACCCTCGAGGAGGCTTTCCATTACATCTTTAATGTACAGATGGCCTGTGAGATCCAG cattgtgagtcacatggttgtttaaagcttctcctgcttgatcactacagGTGCTTGTCCTCAGGCAACCATGGCATGGTGGGTCTTGGTGAGACCCTCGAGGAGGCTTTCCATTACATCTTTAATGTACAGATGGCCTGTGAGATCCAGgtaagacccagccataccctgttttctattgctctacatttgccactagt Alignment from CESAR GTGCTCGTCCTCAGG-AACCATGGCATGGTGGCTCTTGGCGAGACCCTCGAGGAGGCTTTCCATTACATCTTTAATGTACAGATGGCCTGTGAGATCCAG cattgtgagtcacatggttgtttaaagcttctcctgcttgatcactacagGTGCTTGTCCTCAGGCAACCATGGCATGGTGGGTCTTGGTGAGACCCTCGAGGAGGCTTTCCATTACATCTTTAATGTACAGATGGCCTGTGAGATCCAGgtaagacccagccataccctgttttctattgctctacatttgccactagt Alignment from Spaln_aa2Genome GTGCTCGTCCTCAGG-AACCATGGCATGGTGGCTCTTGGCGAGACCCTCGAGGAGGCTTTCCATTACATCTTTAATGTACAGATGGCCTGTGAGATCCAG cattgtgagtcacatggttgtttaaagcttctcctgcttgatcactacagGTGCTTGTCCTCAGGcAACCATGGCATGGTGGGTCTTGGTGAGACCCTCGAGGAGGCTTTCCATTACATCTTTAATGTACAGATGGCCTGTGAGATCCAGgtaagacccagccataccctgttttctattgctctacatttgccactagt Alignment from Spaln_nt2Genome GTGCTCGTCCTCAGG-AACCATGGCATGGTGGCTCTTGGCGAGACCCTCGAGGAGGCTTTCCATTACATCTTTAATGTACAGATGGCCTGTGAGATCCAG cattgtgagtcacatggttgtttaaagcttctcctgcttgatcactacagGTGCTTGTCCTCAGGCAACCATGGCATGGTGGGTCTTGGTGAGACCCTCGAGGAGGCTTTCCATTACATCTTTAATGTACAGATGGCCTGTGAGATCCAGgtaagacccagccataccctgttttctattgctctacatttgccactagt Alignment from Pairagon GTGCTCGTCCTCAGG-AACCATGGCATGGTGGCTCTTGGCGAGACCCTCGAGGAGGCTTTCCATTACATCTTTAATGTACAGATGGCCTGTGAGATCCAG cattgtgagtcacatggttgtttaaagcttctcctgcttgatcactacagGTGCTTGTCCTCAGGCAACCATGGCATGGTGGGTCTTGGTGAGACCCTCGAGGAGGCTTTCCATTACATCTTTAATGTACAGATGGCCTGTGAGATCCAGgtaagacccagccataccctgttttctattgctctacatttgccactagt Alignment from Exonerate_protein2genome GTGCTCGTCCTCAGG-AACCATGGCATGGTGGCTCTTGGCGAGACCCTCGAGGAGGCTTTCCATTACATCTTTAATGTACAGATGGCCTGTGAGATCCAG cattgtgagtcacatggttgtttaaagcttctcctgcttgatcactacagGTGCTTGTCCTCAGGCAACCATGGCATGGTGGGTCTTGGTGAGACCCTCGAGGAGGCTTTCCATTACATCTTTAATGTACAGATGGCCTGTGAGATCCAGgtaagacccagccataccctgttttctattgctctacatttgccactagt Alignment from Exonerate_coding2genome GTGCTCGTCCTCAGG-AACCATGGCATGGTGGCTCTTGGCGAGACCCTCGAGGAGGCTTTCCATTACATCTTTAATGTACAGATGGCCTGTGAGATCCAG cattgtgagtcacatggttgtttaaagcttctcctgcttgatcactacagGTGCTTGTCCTCAGGCAACCATGGCATGGTGGGTCTTGGTGAGACCCTCGAGGAGGCTTTCCATTACATCTTTAATGTACAGATGGCCTGTGAGATCCAGgtaagacccagccataccctgttttctattgctctacatttgccactagt Alignment from GeneWise TCGTCCTCAGGAACCATGGCATGGTGGCTCTTGGCGAGACCCTCGAGGAGGCTTTCCATTACATCTTTAATGTACAGATGGCCTGTGAGATCCAG cattgtgagtcacatggttgtttaaagcttctcctgcttgatcactacaggtgcttgtcctcagGC---------AACCATGGCATGGTGGGTCTTGGTGAGACCCTCGAGGAGGCTTTCCATTACATCTTTAATGTACAGATGGCCTGTGAGATCCAGgtaagacccagccataccctgttttctattgctctacatttgccactagt #### Adrbk1_ID477_18 --> 2 - 0 Original Alignment acTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTC-CCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gagtggctgggtggggtgggcactatgctccctgcactcttcctccgcagacTATGCCCTGGGTAAGGACTGCATTGTGGATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCCAACCGGCTTGAGTGGAGGGGTGAGGGCGAGGCTCCGgtgagtaaaggttcaggcggagcatggtgtgggcaccagggtgggccctg Alignment from CESAR acTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCC-AACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gagtggctgggtggggtgggcactatgctccctgcactcttcctccgcagacTATGCCCTGGGTAAGGACTGCATTGTGGATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCCAACCGGCTTGAGTGGAGGGGTGAGGGCGAGGCTCCGgtgagtaaaggttcaggcggagcatggtgtgggcaccagggtgggccctg Alignment from Spaln_aa2Genome ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCC-AACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gagtggctgggtggggtgggcactatgctccctgcactcttcctccgcagACTATGCCCTGGGTAAGGACTGCATTGTGGATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCcAACCGGCTTGAGTGGAGGGGTGAGGGCGAGGCTCCGgtgagtaaaggttcaggcggagcatggtgtgggcaccagggtgggccctg Alignment from Spaln_nt2Genome ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCC-CAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gagtggctgggtggggtgggcactatgctccctgcactcttcctccgcagACTATGCCCTGGGTAAGGACTGCATTGTGGATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCCAACCGGCTTGAGTGGAGGGGTGAGGGCGAGGCTCCGgtgagtaaaggttcaggcggagcatggtgtgggcaccagggtgggccctg Alignment from Pairagon ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTT-CCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gagtggctgggtggggtgggcactatgctccctgcactcttcctccgcagACTATGCCCTGGGTAAGGACTGCATTGTGGATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCCAACCGGCTTGAGTGGAGGGGTGAGGGCGAGGCTCCGgtgagtaaaggttcaggcggagcatggtgtgggcaccagggtgggccctg Alignment from Exonerate_protein2genome ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTC-CCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gagtggctgggtggggtgggcactatgctccctgcactcttcctccgcagACTATGCCCTGGGTAAGGACTGCATTGTGGATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCCAACCGGCTTGAGTGGAGGGGTGAGGGCGAGGCTCCGgtgagtaaaggttcaggcggagcatggtgtgggcaccagggtgggccctg Alignment from Exonerate_coding2genome ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTC-CCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gagtggctgggtggggtgggcactatgctccctgcactcttcctccgcagACTATGCCCTGGGTAAGGACTGCATTGTGGATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCCAACCGGCTTGAGTGGAGGGGTGAGGGCGAGGCTCCGgtgagtaaaggttcaggcggagcatggtgtgggcaccagggtgggccctg Alignment from GeneWise ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCC-AACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gagtggctgggtggggtgggcactatgctccctgcactcttcctccgcagACTATGCCCTGGGTAAGGACTGCATTGTGGATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCCCAACCGGCTTGAGTGGAGGGGTGAGGGCGAGGCTCCGgtgagtaaaggttcaggcggagcatggtgtgggcaccagggtgggccctg #### Adrbk1_ID479_16 --> 0 - 0 Original Alignment TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGAC-GCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctgctgcccctccctcacccataatgagacaatttttcattactttcagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACCGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtgagtcacctgctcggctctgagtcctgagcctggagcctgaggctgag Alignment from CESAR TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGAC-GCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctgctgcccctccctcacccataatgagacaatttttcattactttcagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACCGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtgagtcacctgctcggctctgagtcctgagcctggagcctgaggctgag Alignment from Spaln_aa2Genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGAC-GCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctgctgcccctccctcacccataatgagacaatttttcattactttcagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACcGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtgagtcacctgctcggctctgagtcctgagcctggagcctgaggctgag Alignment from Spaln_nt2Genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGA-CGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctgctgcccctccctcacccataatgagacaatttttcattactttcagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACCGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtgagtcacctgctcggctctgagtcctgagcctggagcctgaggctgag Alignment from Pairagon TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGA-CGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctgctgcccctccctcacccataatgagacaatttttcattactttcagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACCGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtgagtcacctgctcggctctgagtcctgagcctggagcctgaggctgag Alignment from Exonerate_protein2genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGAC-GCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctgctgcccctccctcacccataatgagacaatttttcattactttcagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACCGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtgagtcacctgctcggctctgagtcctgagcctggagcctgaggctgag Alignment from Exonerate_coding2genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGAC-GCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctgctgcccctccctcacccataatgagacaatttttcattactttcagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACCGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtgagtcacctgctcggctctgagtcctgagcctggagcctgaggctgag Alignment from GeneWise TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGAC-GCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctgctgcccctccctcacccataatgagacaatttttcattactttcagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACCGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtgagtcacctgctcggctctgagtcctgagcctggagcctgaggctgag #### Adrbk1_ID484_11 --> 0 - 2 Original Alignment CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAG-AGGCCTCATGCCAGTgt cagagggtccgagctggcctcatgatggtatcgcgtgtgttttttaacagCCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCAGACCTGAGCCTGGCATGTGACTTCTCCAAGAAGCAGGCCCCATGCCAGTgtgtaagcgcctagctattccctccaaccccaaccttcttcctctttgtgac Alignment from CESAR CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAG-AGGCCTCATGCCAGTgt cagagggtccgagctggcctcatgatggtatcgcgtgtgttttttaacagCCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCAGACCTGAGCCTGGCATGTGACTTCTCCAAGAAGCAGGCCCCATGCCAGTgtgtaagcgcctagctattccctccaaccccaaccttcttcctctttgcacc Alignment from Spaln_aa2Genome CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAG-AGGCCTCATGCCAGTGT cagagggtccgagctggcctcatgatggtatcgcgtgtgttttttaacagCCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCAGACCTGAGCCTGGCATGTGACTTCTCCAAGAAGcAGGCCCCATGCCAGTGTgtaagcgcctagctattccctccaaccccaaccttcttcctctttgtgac Alignment from Spaln_nt2Genome CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAG-AGGCCTCATGCCAGTGT cagagggtccgagctggcctcatgatggtatcgcgtgtgttttttaacagCCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCAGACCTGAGCCTGGCATGTGACTTCTCCAAGAAGCAGGCCCCATGCCAGTGTgtaagcgcctagctattccctccaaccccaaccttcttcctctttgtgac Alignment from Pairagon CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAG-AGGCCTCATGCCAGTGT cagagggtccgagctggcctcatgatggtatcgcgtgtgttttttaacagCCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCAGACCTGAGCCTGGCATGTGACTTCTCCAAGAAGCAGGCCCCATGCCAGTGTgtaagcgcctagctattccctccaaccccaaccttcttcctctttgtgac Alignment from Exonerate_protein2genome CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAG-AGGCCTCATGCCAGTGT cagagggtccgagctggcctcatgatggtatcgcgtgtgttttttaacagCCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCAGACCTGAGCCTGGCATGTGACTTCTCCAAGAAGCAGGCCCCATGCCAGTGTgtaagcgcctagctattccctccaaccccaaccttcttcctctttgtgac Alignment from Exonerate_coding2genome CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAG-AGGCCTCATGCCAGTGT cagagggtccgagctggcctcatgatggtatcgcgtgtgttttttaacagCCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCAGACCTGAGCCTGGCATGTGACTTCTCCAAGAAGCAGGCCCCATGCCAGTGTgtaagcgcctagctattccctccaaccccaaccttcttcctctttgtgac Alignment from GeneWise CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGG---CCTCAT-- cagagggtccgagctggcctcatgatggtatcgcgtgtgttttttaacagCCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCAGACCTGAGCCTGGCATGTGACTTCTCCAAGAAGCAGGCCCCATGCCAgtgtgtaagcgcctagctattccctccaaccccaaccttcttcctctttgtgac #### Adrbk1_ID485_10 --> 2 - 0 Original Alignment gtGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCT-GAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG agggctggacctgggcaggaagctgaggtgtgactgccagttacttgcaggtGGGGACCTGCACTACCACTTGTCTCAGCATGGAGTCTTCTCTCGAAGCTGACATGCGCTTCTACGCTGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTTCAGGGACCTGAAGgtatttggcagctggtagggcattccgcctctcccctccccctgctccac Alignment from CESAR gtGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCT-GAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG agggctggacctgggcaggaagctgaggtgtgactgccagttacttgcaggtGGGGACCTGCACTACCACTTGTCTCAGCATGGAGTCTTCTCTCGAAGCTGACATGCGCTTCTACGCTGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTTCAGGGACCTGAAGgtatttggcagctggtagggcattccgcctctcccctccccctgctccac Alignment from Spaln_aa2Genome GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCT-GAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG agggctggacctgggcaggaagctgaggtgtgactgccagttacttgcagGTGGGGACCTGCACTACCACTTGTCTCAGCATGGAGTCTTCTCTcGAAGCTGACATGCGCTTCTACGCTGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTTCAGGGACCTGAAGgtatttggcagctggtagggcattccgcctctcccctccccctgctccac Alignment from Spaln_nt2Genome GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCT-GAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG agggctggacctgggcaggaagctgaggtgtgactgccagttacttgcagGTGGGGACCTGCACTACCACTTGTCTCAGCATGGAGTCTTCTCTCGAAGCTGACATGCGCTTCTACGCTGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTTCAGGGACCTGAAGgtatttggcagctggtagggcattccgcctctcccctccccctgctccac Alignment from Pairagon GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCT-GAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG agggctggacctgggcaggaagctgaggtgtgactgccagttacttgcagGTGGGGACCTGCACTACCACTTGTCTCAGCATGGAGTCTTCTCTCGAAGCTGACATGCGCTTCTACGCTGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTTCAGGGACCTGAAGgtatttggcagctggtagggcattccgcctctcccctccccctgctccac Alignment from Exonerate_protein2genome GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCT-GAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG agggctggacctgggcaggaagctgaggtgtgactgccagttacttgcagGTGGGGACCTGCACTACCACTTGTCTCAGCATGGAGTCTTCTCTCGAAGCTGACATGCGCTTCTACGCTGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTTCAGGGACCTGAAGgtatttggcagctggtagggcattccgcctctcccctccccctgctccac Alignment from Exonerate_coding2genome GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCT-GAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG agggctggacctgggcaggaagctgaggtgtgactgccagttacttgcagGTGGGGACCTGCACTACCACTTGTCTCAGCATGGAGTCTTCTCTCGAAGCTGACATGCGCTTCTACGCTGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTTCAGGGACCTGAAGgtatttggcagctggtagggcattccgcctctcccctccccctgctccac Alignment from GeneWise GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTC-TCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG agggctggacctgggcaggaagctgaggtgtgactgccagttacttgcagGTGGGGACCTGCACTACCACTTGTCTCAGCATGGAGTCTTCTCTCGAAGCTGACATGCGCTTCTACGCTGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTTCAGGGACCTGAAGgtatttggcagctggtagggcattccgcctctcccctccccctgctccac #### Adrbk1_ID486_9 --> 0 - 1 Original Alignment GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTC-ATCCTGGACCTCATGAACg gaccccagccttggccagccttccctcattttccttttccaattttacagGACTGCCCCTTCACTGTGTGCATGTCATATGCATTCCACACACCAGATAAGCTAAGCTTCCATCCTGGACCTCATGAACggtaacatgcgccctaggggatggagctagggctggacctgggcaggaagc Alignment from CESAR GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTC-ATCCTGGACCTCATGAACg gaccccagccttggccagccttccctcattttccttttccaattttacagGACTGCCCCTTCACTGTGTGCATGTCATATGCATTCCACACACCAGATAAGCTAAGCTTCCATCCTGGACCTCATGAACggtaacatgcgccctaggggatggagctagggctggacctgggcaggaagc Alignment from Spaln_aa2Genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTC-ATCCTGGACCTCATGAACG gaccccagccttggccagccttccctcattttccttttccaattttacagGACTGCCCCTTCACTGTGTGCATGTCATATGCATTCCACACACCAGATAAGCTAAGCTTCcATCCTGGACCTCATGAACGgtaacatgcgccctaggggatggagctagggctggacctgggcaggaagc Alignment from Spaln_nt2Genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTT-CATCCTGGACCTCATGAACG gaccccagccttggccagccttccctcattttccttttccaattttacagGACTGCCCCTTCACTGTGTGCATGTCATATGCATTCCACACACCAGATAAGCTAAGCTTCCATCCTGGACCTCATGAACGgtaacatgcgccctaggggatggagctagggctggacctgggcaggaagc Alignment from Pairagon GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTT-CATCCTGGACCTCATGAACG gaccccagccttggccagccttccctcattttccttttccaattttacagGACTGCCCCTTCACTGTGTGCATGTCATATGCATTCCACACACCAGATAAGCTAAGCTTCCATCCTGGACCTCATGAACGgtaacatgcgccctaggggatggagctagggctggacctgggcaggaagc Alignment from Exonerate_protein2genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTC-ATCCTGGACCTCATGAACG gaccccagccttggccagccttccctcattttccttttccaattttacagGACTGCCCCTTCACTGTGTGCATGTCATATGCATTCCACACACCAGATAAGCTAAGCTTCCATCCTGGACCTCATGAACGgtaacatgcgccctaggggatggagctagggctggacctgggcaggaagc Alignment from Exonerate_coding2genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTC-ATCCTGGACCTCATGAACG gaccccagccttggccagccttccctcattttccttttccaattttacagGACTGCCCCTTCACTGTGTGCATGTCATATGCATTCCACACACCAGATAAGCTAAGCTTCCATCCTGGACCTCATGAACGgtaacatgcgccctaggggatggagctagggctggacctgggcaggaagc Alignment from GeneWise GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCACACACCAGACAAGCTCAGCTTC-ATCCTGGACCTCATGAACG gaccccagccttggccagccttccctcattttccttttccaattttacagGACTGCCCCTTCACTGTGTGCATGTCATATGCATTCCACACACCAGATAAGCTAAGCTTCCATCCTGGACCTCATGAACGgtaacatgcgccctaggggatggagctagggctggacctgggcaggaagc #### Adrbk1_ID488_7 --> 0 - 2 Original Alignment CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAG-GTCTATGGGTGCCGGAAAGCAGACACAGGCAAGat tctgctgttgggctgggaaggcagtgacatttctttcttctacactccagCTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGCGTCTATGGGTGCCGGAAAGCAGATACAGGCAAGatgtgaggaccctgatcagctggactgggtggggtggccaaggaaggagtca Alignment from CESAR CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAG-GTCTATGGGTGCCGGAAAGCAGACACAGGCAAGat tctgctgttgggctgggaaggcagtgacatttctttcttctacactccagCTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGCGTCTATGGGTGCCGGAAAGCAGATACAGGCAAGatgtgaggaccctgatcagctggactgggtggggtggccaaggaaggagtca Alignment from Spaln_aa2Genome CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAG-GTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT tctgctgttgggctgggaaggcagtgacatttctttcttctacactccagCTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGcGTCTATGGGTGCCGGAAAGCAGATACAGGCAAGATgtgaggaccctgatcagctggactgggtggggtggccaaggaaggagtca Alignment from Spaln_nt2Genome CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAG-GTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT tctgctgttgggctgggaaggcagtgacatttctttcttctacactccagCTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGCGTCTATGGGTGCCGGAAAGCAGATACAGGCAAGATgtgaggaccctgatcagctggactgggtggggtggccaaggaaggagtca Alignment from Pairagon CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAG-GTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT tctgctgttgggctgggaaggcagtgacatttctttcttctacactccagCTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGCGTCTATGGGTGCCGGAAAGCAGATACAGGCAAGATgtgaggaccctgatcagctggactgggtggggtggccaaggaaggagtca Alignment from Exonerate_protein2genome CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAG-GTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT tctgctgttgggctgggaaggcagtgacatttctttcttctacactccagCTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGCGTCTATGGGTGCCGGAAAGCAGATACAGGCAAGATgtgaggaccctgatcagctggactgggtggggtggccaaggaaggagtca Alignment from Exonerate_coding2genome CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAG-GTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT tctgctgttgggctgggaaggcagtgacatttctttcttctacactccagCTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGCGTCTATGGGTGCCGGAAAGCAGATACAGGCAAGATgtgaggaccctgatcagctggactgggtggggtggccaaggaaggagtca Alignment from GeneWise CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAG-GTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT tctgctgttgggctgggaaggcagtgacatttctttcttctacactccagCTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGCGTCTATGGGTGCCGGAAAGCAGATACAGGCAAGATgtgaggaccctgatcagctggactgggtggggtggccaaggaaggagtca #### Adrbk1_ID489_6 --> 1 - 0 Original Alignment tGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAG-CTCAACATCCAC agcccagtgccctgatgcttgcttgagtcccgaaacacttcttccctcagtGACAAGTTCACACGTTTCTGTCAGTGGAAGAATATTGAGCCTCAACATCCATgtgagttggttcagggagctggcaggccaggaggccctggggaaatgcag Alignment from CESAR tGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAG-CTCAACATCCAC agcccagtgccctgatgcttgcttgagtcccgaaacacttcttccctcagtGACAAGTTCACACGTTTCTGTCAGTGGAAGAATATTGAGCCTCAACATCCATgtgagttggttcagggagctggcaggccaggaggccctggggaaatgcag Alignment from Spaln_aa2Genome TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAG-CTCAACATCCAC agcccagtgccctgatgcttgcttgagtcccgaaacacttcttccctcagTGACAAGTTCACACGTTTCTGTCAGTGGAAGAATATTGAGcCTCAACATCCATgtgagttggttcagggagctggcaggccaggaggccctggggaaatgcag Alignment from Spaln_nt2Genome TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGC-TCAACATCCAC agcccagtgccctgatgcttgcttgagtcccgaaacacttcttccctcagTGACAAGTTCACACGTTTCTGTCAGTGGAAGAATATTGAGCCTCAACATCCATgtgagttggttcagggagctggcaggccaggaggccctggggaaatgcag Alignment from Pairagon TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAG-CTCAACATCCAC agcccagtgccctgatgcttgcttgagtcccgaaacacttcttccctcagTGACAAGTTCACACGTTTCTGTCAGTGGAAGAATATTGAGCCTCAACATCCATgtgagttggttcagggagctggcaggccaggaggccctggggaaatgcag Alignment from Exonerate_protein2genome TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAG-CTCAACATCCAC agcccagtgccctgatgcttgcttgagtcccgaaacacttcttccctcagTGACAAGTTCACACGTTTCTGTCAGTGGAAGAATATTGAGCCTCAACATCCATgtgagttggttcagggagctggcaggccaggaggccctggggaaatgcag Alignment from Exonerate_coding2genome TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAG-CTCAACATCCAC agcccagtgccctgatgcttgcttgagtcccgaaacacttcttccctcagTGACAAGTTCACACGTTTCTGTCAGTGGAAGAATATTGAGCCTCAACATCCATgtgagttggttcagggagctggcaggccaggaggccctggggaaatgcag Alignment from GeneWise TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAAC------ATCCACCTG agcccagtgccctgatgcttgcttgagtcccgaaacacttcttccctcagTGACAAGTTCACACGTTTCTGTCAGTGGAAGAATATTGAGCCTCAACATCCATGTGAGTTGgttcagggagctggcaggccaggaggccctggggaaatgcag #### Adrbk1_ID490_5 --> 0 - 2 Original Alignment CCATACATTGAGGAG-ATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGag gcctggggcacgacagacttaatcaccaccccttttctttctcgtcacagCCATACATTGAGGAGCATTTGTCAGAATCTCCGAGGGGATTTGTTCCAGAAGTTCATAGAGaggtaagaaggcgaagcggcctaccctggctctgagcagccaggtgtgtggg Alignment from CESAR CCATACATTGAGGAG-ATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGag gcctggggcacgacagacttaatcaccaccccttttctttctcgtcacagCCATACATTGAGGAGCATTTGTCAGAATCTCCGAGGGGATTTGTTCCAGAAGTTCATAGAGaggtaagaaggcgaagcggcctaccctggctctgagcagccaggtgtgtggg Alignment from Spaln_aa2Genome CCATACATTGAGGAG-ATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG gcctggggcacgacagacttaatcaccaccccttttctttctcgtcacagCCATACATTGAGGAGcATTTGTCAGAATCTCCGAGGGGATTTGTTCCAGAAGTTCATAGAGAGgtaagaaggcgaagcggcctaccctggctctgagcagccaggtgtgtggg Alignment from Spaln_nt2Genome CCATACATTGAGGAG-ATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG gcctggggcacgacagacttaatcaccaccccttttctttctcgtcacagCCATACATTGAGGAGCATTTGTCAGAATCTCCGAGGGGATTTGTTCCAGAAGTTCATAGAGAGgtaagaaggcgaagcggcctaccctggctctgagcagccaggtgtgtggg Alignment from Pairagon CCATACATTGAGGAG-ATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG gcctggggcacgacagacttaatcaccaccccttttctttctcgtcacagCCATACATTGAGGAGCATTTGTCAGAATCTCCGAGGGGATTTGTTCCAGAAGTTCATAGAGAGgtaagaaggcgaagcggcctaccctggctctgagcagccaggtgtgtggg Alignment from Exonerate_protein2genome CCATACATTGAGGAG-ATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG gcctggggcacgacagacttaatcaccaccccttttctttctcgtcacagCCATACATTGAGGAGCATTTGTCAGAATCTCCGAGGGGATTTGTTCCAGAAGTTCATAGAGAGgtaagaaggcgaagcggcctaccctggctctgagcagccaggtgtgtggg Alignment from Exonerate_coding2genome CCATACATTGAGGAG-ATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG gcctggggcacgacagacttaatcaccaccccttttctttctcgtcacagCCATACATTGAGGAGCATTTGTCAGAATCTCCGAGGGGATTTGTTCCAGAAGTTCATAGAGAGgtaagaaggcgaagcggcctaccctggctctgagcagccaggtgtgtggg Alignment from GeneWise GGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG gcctggggcacgacagacttaatcaccaccccttttctttctcgtcacagccatacattgagGAGCATTTGTCAGAATCTCCGAGGGGATTTGTTCCAGAAGTTCATAGAGAGgtaagaaggcgaagcggcctaccctggctctgagcagccaggtgtgtggg #### Adrbk1_ID492_3 --> 0 - 0 Original Alignment ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTT-GACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacagaaagttatctagcatttcttcttcctacagATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTCGACTCCTACATTATGAAGGAACTGCTGGCCTGCTCACATgtatgggtcctgtggggtgtgaacccatgtgttgatcccagcaatgtggg Alignment from CESAR ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTT-GACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacagaaagttatctagcatttcttcttcctacagATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTCGACTCCTACATTATGAAGGAACTGCTGGCCTGCTCACATgtatgggtcctgtggggtgtgaacccatgtgttgatcccagcaatgtggg Alignment from Spaln_aa2Genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATC-TTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacagaaagttatctagcatttcttcttcctacagATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCtTTCGACTCCTACATTATGAAGGAACTGCTGGCCTGCTCACATgtatgggtcctgtggggtgtgaacccatgtgttgatcccagcaatgtggg Alignment from Spaln_nt2Genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTT-GACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacagaaagttatctagcatttcttcttcctacagATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTCGACTCCTACATTATGAAGGAACTGCTGGCCTGCTCACATgtatgggtcctgtggggtgtgaacccatgtgttgatcccagcaatgtggg Alignment from Pairagon ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTT-GACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacagaaagttatctagcatttcttcttcctacagATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTCGACTCCTACATTATGAAGGAACTGCTGGCCTGCTCACATgtatgggtcctgtggggtgtgaacccatgtgttgatcccagcaatgtggg Alignment from Exonerate_protein2genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATC-TTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacagaaagttatctagcatttcttcttcctacagATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTCGACTCCTACATTATGAAGGAACTGCTGGCCTGCTCACATgtatgggtcctgtggggtgtgaacccatgtgttgatcccagcaatgtggg Alignment from Exonerate_coding2genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATC-TTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacagaaagttatctagcatttcttcttcctacagATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTCGACTCCTACATTATGAAGGAACTGCTGGCCTGCTCACATgtatgggtcctgtggggtgtgaacccatgtgttgatcccagcaatgtggg Alignment from GeneWise ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAG-ATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacagaaagttatctagcatttcttcttcctacagATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTCGACTCCTACATTATGAAGGAACTGCTGGCCTGCTCACATgtatgggtcctgtggggtgtgaacccatgtgttgatcccagcaatgtggg #### Aip_ID330_5 --> 0 - 1 Original Alignment GAGCAGCCTGGCTCA-CCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATg ctgcagccaggactcagcatcttcacttactgtttgttcgtgtcgtctagGAGCAGCCTGGCTCACCCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGTTACCCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATggtaagtaccatgcccactcgcagcccagactggactcttcccatccagtg Alignment from CESAR GAGCAGCCTGGCTCA-CCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATg ctgcagccaggactcagcatcttcacttactgtttgttcgtgtcgtctagGAGCAGCCTGGCTCACCCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGTTACCCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATggtaagtaccatgcccactcgcagcccagactggactcttcccatccagtg Alignment from Spaln_aa2Genome GAGCAGCCTGGCTCACCT-GACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctgcagccaggactcagcatcttcacttactgtttgttcgtgtcgtctagGAGCAGCCTGGCTCACCCtGACTGGATCCAGTTGGACCTGCAGATCACACCACTGTTACCCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaagtaccatgcccactcgcagcccagactggactcttcccatccagtg Alignment from Spaln_nt2Genome GAGCAGCCTGGCTCA-CCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctgcagccaggactcagcatcttcacttactgtttgttcgtgtcgtctagGAGCAGCCTGGCTCACCCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGTTACCCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaagtaccatgcccactcgcagcccagactggactcttcccatccagtg Alignment from Pairagon GAGCAGCCTGGCTCA-CCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctgcagccaggactcagcatcttcacttactgtttgttcgtgtcgtctagGAGCAGCCTGGCTCACCCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGTTACCCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaagtaccatgcccactcgcagcccagactggactcttcccatccagtg Alignment from Exonerate_protein2genome GAGCAGCCTGGCTCA-CCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctgcagccaggactcagcatcttcacttactgtttgttcgtgtcgtctagGAGCAGCCTGGCTCACCCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGTTACCCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaagtaccatgcccactcgcagcccagactggactcttcccatccagtg Alignment from Exonerate_coding2genome GAGCAGCCTGGCTCA-CCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctgcagccaggactcagcatcttcacttactgtttgttcgtgtcgtctagGAGCAGCCTGGCTCACCCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGTTACCCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaagtaccatgcccactcgcagcccagactggactcttcccatccagtg Alignment from GeneWise GAGCAGCCTGGC-TCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATG ctgcagccaggactcagcatcttcacttactgtttgttcgtgtcgtctagGAGCAGCCTGGCTCACCCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGTTACCCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCATCCTCAACAAGTATGATGgtaagtaccatgcccactcgcagcccagactggactcttcccatccagtg #### Aldh3b1_ID203_4 --> 2 - 0 Original Alignment ggAATTGTGTGGTGCTCAAGCCCTCAGAGATC-AGCAAGGCCACTGAAAAGATACTGGCTGAGGTCCTGCCCCGCTATCTGGACCAG cacacaccatgcatggttgccttctcctttcccggcaccctcttccccagggAATTGTGTGGTGCTTAAGCCCTCAGAGATCCAGCAAGGCCACTGAAAAGATACTGGCTGAGGTCCTGCCCCGCTATCTGGACCAGgtgagcagaaatagtcaagctctatacttggatagtggggtcttctgcat Alignment from CESAR ggAATTGTGTGGTGCTCAAGCCCTCAGAGATC-AGCAAGGCCACTGAAAAGATACTGGCTGAGGTCCTGCCCCGCTATCTGGACCAG cacacaccatgcatggttgccttctcctttcccggcaccctcttccccagggAATTGTGTGGTGCTTAAGCCCTCAGAGATCCAGCAAGGCCACTGAAAAGATACTGGCTGAGGTCCTGCCCCGCTATCTGGACCAGgtgagcagaaatagtcaagctctatacttggatagtggggtcttctgcat Alignment from Spaln_aa2Genome GGAATTGTGTGGTGCTCAAGCCCTCAGAGATC-AGCAAGGCCACTGAAAAGATACTGGCTGAGGTCCTGCCCCGCTATCTGGACCAG cacacaccatgcatggttgccttctcctttcccggcaccctcttccccagGGAATTGTGTGGTGCTTAAGCCCTCAGAGATCcAGCAAGGCCACTGAAAAGATACTGGCTGAGGTCCTGCCCCGCTATCTGGACCAGgtgagcagaaatagtcaagctctatacttggatagtggggtcttctgcat Alignment from Spaln_nt2Genome GGAATTGTGTGGTGCTCAAGCCCTCAGAGAT-CAGCAAGGCCACTGAAAAGATACTGGCTGAGGTCCTGCCCCGCTATCTGGACCAG cacacaccatgcatggttgccttctcctttcccggcaccctcttccccagGGAATTGTGTGGTGCTTAAGCCCTCAGAGATCCAGCAAGGCCACTGAAAAGATACTGGCTGAGGTCCTGCCCCGCTATCTGGACCAGgtgagcagaaatagtcaagctctatacttggatagtggggtcttctgcat Alignment from Pairagon GGAATTGTGTGGTGCTCAAGCCCTCAGAGAT-CAGCAAGGCCACTGAAAAGATACTGGCTGAGGTCCTGCCCCGCTATCTGGACCAG cacacaccatgcatggttgccttctcctttcccggcaccctcttccccagGGAATTGTGTGGTGCTTAAGCCCTCAGAGATCCAGCAAGGCCACTGAAAAGATACTGGCTGAGGTCCTGCCCCGCTATCTGGACCAGgtgagcagaaatagtcaagctctatacttggatagtggggtcttctgcat Alignment from Exonerate_protein2genome GGAATTGTGTGGTGCTCAAGCCCTCAGAGATC-AGCAAGGCCACTGAAAAGATACTGGCTGAGGTCCTGCCCCGCTATCTGGACCAG cacacaccatgcatggttgccttctcctttcccggcaccctcttccccagGGAATTGTGTGGTGCTTAAGCCCTCAGAGATCCAGCAAGGCCACTGAAAAGATACTGGCTGAGGTCCTGCCCCGCTATCTGGACCAGgtgagcagaaatagtcaagctctatacttggatagtggggtcttctgcat Alignment from Exonerate_coding2genome GGAATTGTGTGGTGCTCAAGCCCTCAGAGATC-AGCAAGGCCACTGAAAAGATACTGGCTGAGGTCCTGCCCCGCTATCTGGACCAG cacacaccatgcatggttgccttctcctttcccggcaccctcttccccagGGAATTGTGTGGTGCTTAAGCCCTCAGAGATCCAGCAAGGCCACTGAAAAGATACTGGCTGAGGTCCTGCCCCGCTATCTGGACCAGgtgagcagaaatagtcaagctctatacttggatagtggggtcttctgcat Alignment from GeneWise GGAATTGTGTGGTGCTCAAGCCCTCAGAGATC-AGCAAGGCCACTGAAAAGATACTGGCTGAGGTCCTGCCCCGCTATCTGGACCAG cacacaccatgcatggttgccttctcctttcccggcaccctcttccccagGGAATTGTGTGGTGCTTAAGCCCTCAGAGATCCAGCAAGGCCACTGAAAAGATACTGGCTGAGGTCCTGCCCCGCTATCTGGACCAGgtgagcagaaatagtcaagctctatacttggatagtggggtcttctgcat #### Aldh3b2_ID239_5 --> 2 - 0 Original Alignment gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAG-TATCTGGACCAG gtgtgcaagcaccaacctcccctcactatcagccattttctctaatccaggaAACTGTGTGGTGCTGAAGCCATCTGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGCCATCTGGACCAGgtgagtatggctttgcttcttaagcagttgacacacccacacctgtgtgc Alignment from CESAR gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAG-TATCTGGACCAG gtgtgcaagcaccaacctcccctcactatcagccattttctctaatccaggaAACTGTGTGGTGCTGAAGCCATCTGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGCCATCTGGACCAGgtgagtatggctttgcttcttaagcagttgacacacccacacctgtgtgc Alignment from Spaln_aa2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAG-TATCTGGACCAG gtgtgcaagcaccaacctcccctcactatcagccattttctctaatccagGAAACTGTGTGGTGCTGAAGCCATCTGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGcCATCTGGACCAGgtgagtatggctttgcttcttaagcagttgacacacccacacctgtgtgc Alignment from Spaln_nt2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGT-ATCTGGACCAG gtgtgcaagcaccaacctcccctcactatcagccattttctctaatccagGAAACTGTGTGGTGCTGAAGCCATCTGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGCCATCTGGACCAGgtgagtatggctttgcttcttaagcagttgacacacccacacctgtgtgc Alignment from Pairagon GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAG-TATCTGGACCAG gtgtgcaagcaccaacctcccctcactatcagccattttctctaatccagGAAACTGTGTGGTGCTGAAGCCATCTGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGCCATCTGGACCAGgtgagtatggctttgcttcttaagcagttgacacacccacacctgtgtgc Alignment from Exonerate_protein2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAG-TATCTGGACCAG gtgtgcaagcaccaacctcccctcactatcagccattttctctaatccagGAAACTGTGTGGTGCTGAAGCCATCTGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGCCATCTGGACCAGgtgagtatggctttgcttcttaagcagttgacacacccacacctgtgtgc Alignment from Exonerate_coding2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAG-TATCTGGACCAG gtgtgcaagcaccaacctcccctcactatcagccattttctctaatccagGAAACTGTGTGGTGCTGAAGCCATCTGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGCCATCTGGACCAGgtgagtatggctttgcttcttaagcagttgacacacccacacctgtgtgc Alignment from GeneWise GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAGAGC-- gtgtgcaagcaccaacctcccctcactatcagccattttctctaatccagGAAACTGTGTGGTGCTGAAGCCATCTGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGCCATCTGGACCAGGTGAgtatggctttgcttcttaagcagttgacacacccacacctgtgtgc #### Aldh3b2_ID240_6 --> 0 - 1 Original Alignment AGCTGCTTTGCTGTG-ATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAg aggttgccctgccctgagtctgcctcctctgggtgtgtttattgtttcagAGCTGCTTTGCTGTGCATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAggtgagaagagccctcaggatctgggggccctgtccaggacctggggtagg Alignment from CESAR AGCTGCTTTGCTGTG-ATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAg aggttgccctgccctgagtctgcctcctctgggtgtgtttattgtttcagAGCTGCTTTGCTGTGCATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAggtgagaagagccctcaggatctgggggccctgtccaggacctggggtagg Alignment from Spaln_aa2Genome AGCTGCTTTGCTGTG-ATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aggttgccctgccctgagtctgcctcctctgggtgtgtttattgtttcagAGCTGCTTTGCTGTGcATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAGgtgagaagagccctcaggatctgggggccctgtccaggacctggggtagg Alignment from Spaln_nt2Genome AGCTGCTTTGCTGTG-ATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aggttgccctgccctgagtctgcctcctctgggtgtgtttattgtttcagAGCTGCTTTGCTGTGCATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAGgtgagaagagccctcaggatctgggggccctgtccaggacctggggtagg Alignment from Pairagon AGCTGCTTTGCTGTG-ATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aggttgccctgccctgagtctgcctcctctgggtgtgtttattgtttcagAGCTGCTTTGCTGTGCATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAGgtgagaagagccctcaggatctgggggccctgtccaggacctggggtagg Alignment from Exonerate_protein2genome AGCTGCTTTGCTGTG-ATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aggttgccctgccctgagtctgcctcctctgggtgtgtttattgtttcagAGCTGCTTTGCTGTGCATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAGgtgagaagagccctcaggatctgggggccctgtccaggacctggggtagg Alignment from Exonerate_coding2genome AGCTGCTTTGCTGTG-ATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aggttgccctgccctgagtctgcctcctctgggtgtgtttattgtttcagAGCTGCTTTGCTGTGCATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAGgtgagaagagccctcaggatctgggggccctgtccaggacctggggtagg Alignment from GeneWise --TGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aggttgccctgccctgagtctgcctcctctgggtgtgtttattgtttcagagCTGCTTTGCTGTGCATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAGgtgagaagagccctcaggatctgggggccctgtccaggacctggggtagg #### Ankrd13d_ID460_13 --> 2 - 0 Original Alignment gaAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACA-GAGGCAGAGCAG tctctgatctgcctttgggctgaacatgactatctctcttttctacccaggaAGCCTTTATCCATGTGAGGTAGACCCCACTGTGTTTGAGGCACCTGAGGGATACAGTGTGCTGGGGGCTGAGCGCAGTGAGCCCCTTCGGGACGAAGATGATGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTGGAGGCAGGCACACGAGGCAGAGCAGgtaccatgtgggaaggtgggtcatggcctccacagcctcaggcccaaggt Alignment from CESAR gaAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACA-GAGGCAGAGCAG tctctgatctgcctttgggctgaacatgactatctctcttttctacccaggaAGCCTTTATCCATGTGAGGTAGACCCCACTGTGTTTGAGGCACCTGAGGGATACAGTGTGCTGGGGGCTGAGCGCAGTGAGCCCCTTCGGGACGAAGATGATGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTGGAGGCAGGCACACGAGGCAGAGCAGgtaccatgtgggaaggtgggtcatggcctccacagcctcaggcccaaggt Alignment from Spaln_aa2Genome GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG tctctgatctgcctttgggctgaacatgactatctctcttttctacccagGAAGCCTTTATCCATGTGAGGTAGACCCCACTGTGTTTGAGGCACCTGAGGGATACAGTGTGCTGGGGGCTGAGCGCAGTGAGCCCCTTCGGGACGAAGATGATGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTGGAGGCAGGCACACGAGGC---AGAgcaggtaccatgtgggaaggtgggtcatggcctccacagcctcaggcccaaggt Alignment from Spaln_nt2Genome GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACA-GAGGCAGAGCAG tctctgatctgcctttgggctgaacatgactatctctcttttctacccagGAAGCCTTTATCCATGTGAGGTAGACCCCACTGTGTTTGAGGCACCTGAGGGATACAGTGTGCTGGGGGCTGAGCGCAGTGAGCCCCTTCGGGACGAAGATGATGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTGGAGGCAGGCACACGAGGCAGAGCAGgtaccatgtgggaaggtgggtcatggcctccacagcctcaggcccaaggt Alignment from Pairagon GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACA-GAGGCAGAGC---------------------------------------------------- tctctgatctgcctttgggctgaacatgactatctctcttttctacccagGAAGCCTTTATCCATGTGAGGTAGACCCCACTGTGTTTGAGGCACCTGAGGGATACAGTGTGCTGGGGGCTGAGCGCAGTGAGCCCCTTCGGGACGAAGATGATGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTGGAGGCAGGCACACGAGGCAGAGCAGGTACCATGTGGGAAGGTGGGTCATGGCCTCCACAGCCTCAGGCCCAAGGT Alignment from Exonerate_protein2genome GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACA-GAGGCAGAGCAG tctctgatctgcctttgggctgaacatgactatctctcttttctacccagGAAGCCTTTATCCATGTGAGGTAGACCCCACTGTGTTTGAGGCACCTGAGGGATACAGTGTGCTGGGGGCTGAGCGCAGTGAGCCCCTTCGGGACGAAGATGATGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTGGAGGCAGGCACACGAGGCAGAGCAGgtaccatgtgggaaggtgggtcatggcctccacagcctcaggcccaaggt Alignment from Exonerate_coding2genome GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACA-GAGGCAGAGCAG tctctgatctgcctttgggctgaacatgactatctctcttttctacccagGAAGCCTTTATCCATGTGAGGTAGACCCCACTGTGTTTGAGGCACCTGAGGGATACAGTGTGCTGGGGGCTGAGCGCAGTGAGCCCCTTCGGGACGAAGATGATGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTGGAGGCAGGCACACGAGGCAGAGCAGgtaccatgtgggaaggtgggtcatggcctccacagcctcaggcccaaggt Alignment from GeneWise GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCA--------------------------------------------------------- tctctgatctgcctttgggctgaacatgactatctctcttttctacccagGAAGCCTTTATCCATGTGAGGTAGACCCCACTGTGTTTGAGGCACCTGAGGGATACAGTGTGCTGGGGGCTGAGCGCAGTGAGCCCCTTCGGGACGAAGATGATGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTGGAGGCAGGCACACGAGGCAGAGCAGGTACCATGTGGGAAGGTGGGTCATGGCCTCCACAGCCTCAGGCCCAAGGT #### Ankrd13d_ID461_12 --> 2 - 1 Original Alignment agATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGAT-GAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAg cggggttactggggggtgcaggcagcttccagtatctgtgttctgtgcagagATTCCCCTCTTCCATGTGCTTAATGCCCGCATCACCTTCAGTAACCTTTGTGGCTGTGATCGAACCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCAGCCATTTCTGCTTCAggtacacctatagctacagacgacattcccagctggcagctctctgatctg Alignment from CESAR agATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGAT-GAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAg cggggttactggggggtgcaggcagcttccagtatctgtgttctgtgcagagATTCCCCTCTTCCATGTGCTTAATGCCCGCATCACCTTCAGTAACCTTTGTGGCTGTGATCGAACCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCAGCCATTTCTGCTTCAggtacacctatagctacagacgacattcccagctggcagctctctgatctg Alignment from Spaln_aa2Genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGAT-GAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG cggggttactggggggtgcaggcagcttccagtatctgtgttctgtgcagAGATTCCCCTCTTCCATGTGCTTAATGCCCGCATCACCTTCAGTAACCTTTGTGGCTGTGATcGAACCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCAGCCATTTCTGCTTCAGgtacacctatagctacagacgacattcccagctggcagctctctgatctg Alignment from Spaln_nt2Genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGAT-GAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG cggggttactggggggtgcaggcagcttccagtatctgtgttctgtgcagAGATTCCCCTCTTCCATGTGCTTAATGCCCGCATCACCTTCAGTAACCTTTGTGGCTGTGATCGAACCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCAGCCATTTCTGCTTCAGgtacacctatagctacagacgacattcccagctggcagctctctgatctg Alignment from Pairagon AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGAT-GAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG cggggttactggggggtgcaggcagcttccagtatctgtgttctgtgcagAGATTCCCCTCTTCCATGTGCTTAATGCCCGCATCACCTTCAGTAACCTTTGTGGCTGTGATCGAACCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCAGCCATTTCTGCTTCAGgtacacctatagctacagacgacattcccagctggcagctctctgatctg Alignment from Exonerate_protein2genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGAT-GAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG cggggttactggggggtgcaggcagcttccagtatctgtgttctgtgcagAGATTCCCCTCTTCCATGTGCTTAATGCCCGCATCACCTTCAGTAACCTTTGTGGCTGTGATCGAACCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCAGCCATTTCTGCTTCAGgtacacctatagctacagacgacattcccagctggcagctctctgatctg Alignment from Exonerate_coding2genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGAT-GAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG cggggttactggggggtgcaggcagcttccagtatctgtgttctgtgcagAGATTCCCCTCTTCCATGTGCTTAATGCCCGCATCACCTTCAGTAACCTTTGTGGCTGTGATCGAACCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCAGCCATTTCTGCTTCAGgtacacctatagctacagacgacattcccagctggcagctctctgatctg Alignment from GeneWise AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGAT-GAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG cggggttactggggggtgcaggcagcttccagtatctgtgttctgtgcagAGATTCCCCTCTTCCATGTGCTTAATGCCCGCATCACCTTCAGTAACCTTTGTGGCTGTGATCGAACCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCAGCCATTTCTGCTTCAGgtacacctatagctacagacgacattcccagctggcagctctctgatctg #### Ankrd13d_ID464_9 --> 2 - 0 Original Alignment ggGGGAAGACTCCATTCCAGTCCTTCCTG-GGCATGGCCCAGCAGCACTCCTCCCACACTTTG cttagtgagtagccaagagtttcctcatatttgtttttgttttttcctagggGGGAAGACTCCATTCCAGTCCTTCTTGCGGCATGGCCCAGCAGCACTCTTCCCACACTTTGgtaagcttggcaaggggagggctgggacaagcctgggtgggtggggtgct Alignment from CESAR ggGGGAAGACTCCATTCCAGTCCTTCCTG-GGCATGGCCCAGCAGCACTCCTCCCACACTTTG cttagtgagtagccaagagtttcctcatatttgtttttgttttttcctagggGGGAAGACTCCATTCCAGTCCTTCTTGCGGCATGGCCCAGCAGCACTCTTCCCACACTTTGgtaagcttggcaaggggagggctgggacaagcctgggtgggtggggtgct Alignment from Spaln_aa2Genome GGGGGAAGACTCCATTCCAGTCCTTCCTG-GGCATGGCCCAGCAGCACTCCTCCCACACTTTG cttagtgagtagccaagagtttcctcatatttgtttttgttttttcctagGGGGGAAGACTCCATTCCAGTCCTTCTTGcGGCATGGCCCAGCAGCACTCTTCCCACACTTTGgtaagcttggcaaggggagggctgggacaagcctgggtgggtggggtgct Alignment from Spaln_nt2Genome GGGGGAAGACTCCATTCCAGTCCTTCCTG-GGCATGGCCCAGCAGCACTCCTCCCACACTTTG cttagtgagtagccaagagtttcctcatatttgtttttgttttttcctagGGGGGAAGACTCCATTCCAGTCCTTCTTGCGGCATGGCCCAGCAGCACTCTTCCCACACTTTGgtaagcttggcaaggggagggctgggacaagcctgggtgggtggggtgct Alignment from Pairagon GGGGGAAGACTCCATTCCAGTCCTTCCTG-GGCATGGCCCAGCAGCACTCCTCCCACACTTTG cttagtgagtagccaagagtttcctcatatttgtttttgttttttcctagGGGGGAAGACTCCATTCCAGTCCTTCTTGCGGCATGGCCCAGCAGCACTCTTCCCACACTTTGgtaagcttggcaaggggagggctgggacaagcctgggtgggtggggtgct Alignment from Exonerate_protein2genome GGGGGAAGACTCCATTCCAGTCCTTCCTG-GGCATGGCCCAGCAGCACTCCTCCCACACTTTG cttagtgagtagccaagagtttcctcatatttgtttttgttttttcctagGGGGGAAGACTCCATTCCAGTCCTTCTTGCGGCATGGCCCAGCAGCACTCTTCCCACACTTTGgtaagcttggcaaggggagggctgggacaagcctgggtgggtggggtgct Alignment from Exonerate_coding2genome GGGGGAAGACTCCATTCCAGTCCTTCCTG-GGCATGGCCCAGCAGCACTCCTCCCACACTTTG cttagtgagtagccaagagtttcctcatatttgtttttgttttttcctagGGGGGAAGACTCCATTCCAGTCCTTCTTGCGGCATGGCCCAGCAGCACTCTTCCCACACTTTGgtaagcttggcaaggggagggctgggacaagcctgggtgggtggggtgct Alignment from GeneWise GGGGGAAGACTCCATTCCAGTCCTTC-CTGGGCATGGCCCAGCAGCACTCCTCCCACACTTTG cttagtgagtagccaagagtttcctcatatttgtttttgttttttcctagGGGGGAAGACTCCATTCCAGTCCTTCTTGCGGCATGGCCCAGCAGCACTCTTCCCACACTTTGgtaagcttggcaaggggagggctgggacaagcctgggtgggtggggtgct #### Ankrd13d_ID465_8 --> 0 - 1 Original Alignment GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGAC-AAGTTAAGGAACAAAg gaaccctcagtcccctgtgtcttcttacttgtctccctttttcctttcagGTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACCAAGTTAAGGAACAAAggtaaagccacgtgcaattgcctgctgcccagccatcctagggtctgtgcc Alignment from CESAR GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGAC-AAGTTAAGGAACAAAg gaaccctcagtcccctgtgtcttcttacttgtctccctttttcctttcagGTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACCAAGTTAAGGAACAAAggtaaagccacgtgcaattgcctgctgcccagccatcctagggtctgtgcc Alignment from Spaln_aa2Genome GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGAC-AAGTTAAGGAACAAAG gaaccctcagtcccctgtgtcttcttacttgtctccctttttcctttcagGTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACcAAGTTAAGGAACAAAGgtaaagccacgtgcaattgcctgctgcccagccatcctagggtctgtgcc Alignment from Spaln_nt2Genome GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGA-CAAGTTAAGGAACAAAG gaaccctcagtcccctgtgtcttcttacttgtctccctttttcctttcagGTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACCAAGTTAAGGAACAAAGgtaaagccacgtgcaattgcctgctgcccagccatcctagggtctgtgcc Alignment from Pairagon GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGA-CAAGTTAAGGAACAAAG gaaccctcagtcccctgtgtcttcttacttgtctccctttttcctttcagGTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACCAAGTTAAGGAACAAAGgtaaagccacgtgcaattgcctgctgcccagccatcctagggtctgtgcc Alignment from Exonerate_protein2genome GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGAC-AAGTTAAGGAACAAAG gaaccctcagtcccctgtgtcttcttacttgtctccctttttcctttcagGTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACCAAGTTAAGGAACAAAGgtaaagccacgtgcaattgcctgctgcccagccatcctagggtctgtgcc Alignment from Exonerate_coding2genome GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGAC-AAGTTAAGGAACAAAG gaaccctcagtcccctgtgtcttcttacttgtctccctttttcctttcagGTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACCAAGTTAAGGAACAAAGgtaaagccacgtgcaattgcctgctgcccagccatcctagggtctgtgcc Alignment from GeneWise GTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACAAGTTAAGGAACAAA-- gaaccctcagtcccctgtgtcttcttacttgtctccctttttcctttcagGTGTACAGTGCCACCAATGTGGAGCTGGTGACACGCACAAGAACAGAACACCTCTCTGACCAGGACCAAGTTAAGGAACAAAGgtaaagccacgtgcaattgcctgctgcccagccatcctagggtctgtgcc #### Ankrd1_ID7096_7 --> 0 - 0 Original Alignment CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACT-GGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGA ctcagatggtgattgttctcactccttctcttccctctgtctcctcacagCTCCTCAGCACAGCACTGCATGTGGCAGTGAGGACTCGGTCATTACGAGTGCACTGAGCACCTCATCACCTGCGAGGCTGATCTCAATGCCAAGGACAGAgtaagcatttgacaggtctgtgccagcgtcagcttctttgaaaccaccca Alignment from CESAR CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACT-GGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGA ctcagatggtgattgttctcactccttctcttccctctgtctcctcacagCTCCTCAGCACAGCACTGCATGTGGCAGTGAGGACTCGGTCATTACGAGTGCACTGAGCACCTCATCACCTGCGAGGCTGATCTCAATGCCAAGGACAGAgtaagcatttgacaggtctgtgccagcgtcagcttctttgaaaccaccca Alignment from Spaln_aa2Genome CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACT-GGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGA ctcagatggtgattgttctcactccttctcttccctctgtctcctcacagCTCCTCAGCACAGCACTGCATGTGGCAGTGAGGACTcGGTCATTACGAGTGCACTGAGCACCTCATCACCTGCGAGGCTGATCTCAATGCCAAGGACAGAgtaagcatttgacaggtctgtgccagcgtcagcttctttgaaaccaccca Alignment from Spaln_nt2Genome CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACT-GGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGA ctcagatggtgattgttctcactccttctcttccctctgtctcctcacagCTCCTCAGCACAGCACTGCATGTGGCAGTGAGGACTCGGTCATTACGAGTGCACTGAGCACCTCATCACCTGCGAGGCTGATCTCAATGCCAAGGACAGAgtaagcatttgacaggtctgtgccagcgtcagcttctttgaaaccaccca Alignment from Pairagon CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACT-GGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGA ctcagatggtgattgttctcactccttctcttccctctgtctcctcacagCTCCTCAGCACAGCACTGCATGTGGCAGTGAGGACTCGGTCATTACGAGTGCACTGAGCACCTCATCACCTGCGAGGCTGATCTCAATGCCAAGGACAGAgtaagcatttgacaggtctgtgccagcgtcagcttctttgaaaccaccca Alignment from Exonerate_protein2genome CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACT-GGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGA ctcagatggtgattgttctcactccttctcttccctctgtctcctcacagCTCCTCAGCACAGCACTGCATGTGGCAGTGAGGACTCGGTCATTACGAGTGCACTGAGCACCTCATCACCTGCGAGGCTGATCTCAATGCCAAGGACAGAgtaagcatttgacaggtctgtgccagcgtcagcttctttgaaaccaccca Alignment from Exonerate_coding2genome CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACT-GGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGA ctcagatggtgattgttctcactccttctcttccctctgtctcctcacagCTCCTCAGCACAGCACTGCATGTGGCAGTGAGGACTCGGTCATTACGAGTGCACTGAGCACCTCATCACCTGCGAGGCTGATCTCAATGCCAAGGACAGAgtaagcatttgacaggtctgtgccagcgtcagcttctttgaaaccaccca Alignment from GeneWise CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGG-ACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGA ctcagatggtgattgttctcactccttctcttccctctgtctcctcacagCTCCTCAGCACAGCACTGCATGTGGCAGTGAGGACTCGGTCATTACGAGTGCACTGAGCACCTCATCACCTGCGAGGCTGATCTCAATGCCAAGGACAGAgtaagcatttgacaggtctgtgccagcgtcagcttctttgaaaccaccca #### Ankrd2_ID8374_8 --> 0 - 0 Original Alignment GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTC-TTGCATGGGGCGGACATGATGGCTAAGAACCTG cctacccacccactgacctcaagggttgctttcctgtgctcccattacagGAAGGGGACAGTGCCCTACATGATGCTGTGAGGCTCAACCGCTACAAAATCATCAAACTGCTGCTCCTTGCATGGGGCAGACATGATGGCTAAGAACCTGgtaagtctgttcctcgaggcttgatggtttggggtgcccttgcatggtgg Alignment from CESAR GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTC-TTGCATGGGGCGGACATGATGGCTAAGAACCTG cctacccacccactgacctcaagggttgctttcctgtgctcccattacagGAAGGGGACAGTGCCCTACATGATGCTGTGAGGCTCAACCGCTACAAAATCATCAAACTGCTGCTCCTTGCATGGGGCAGACATGATGGCTAAGAACCTGgtaagtctgttcctcgaggcttgatggtttggggtgcccttgcatggtgg Alignment from Spaln_aa2Genome GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTG-CATGGGGCGGACATGATGGCTAAGAACCTG cctacccacccactgacctcaagggttgctttcctgtgctcccattacagGAAGGGGACAGTGCCCTACATGATGCTGTGAGGCTCAACCGCTACAAAATCATCAAACTGCTGCTCCTTgCATGGGGCAGACATGATGGCTAAGAACCTGgtaagtctgttcctcgaggcttgatggtttggggtgcccttgcatggtgg Alignment from Spaln_nt2Genome GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCT-CTTGCATGGGGCGGACATGATGGCTAAGAACCTG cctacccacccactgacctcaagggttgctttcctgtgctcccattacagGAAGGGGACAGTGCCCTACATGATGCTGTGAGGCTCAACCGCTACAAAATCATCAAACTGCTGCTCCTTGCATGGGGCAGACATGATGGCTAAGAACCTGgtaagtctgttcctcgaggcttgatggtttggggtgcccttgcatggtgg Alignment from Pairagon GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCT-CTTGCATGGGGCGGACATGATGGCTAAGAACCTG cctacccacccactgacctcaagggttgctttcctgtgctcccattacagGAAGGGGACAGTGCCCTACATGATGCTGTGAGGCTCAACCGCTACAAAATCATCAAACTGCTGCTCCTTGCATGGGGCAGACATGATGGCTAAGAACCTGgtaagtctgttcctcgaggcttgatggtttggggtgcccttgcatggtgg Alignment from Exonerate_protein2genome GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTC-TTGCATGGGGCGGACATGATGGCTAAGAACCTG cctacccacccactgacctcaagggttgctttcctgtgctcccattacagGAAGGGGACAGTGCCCTACATGATGCTGTGAGGCTCAACCGCTACAAAATCATCAAACTGCTGCTCCTTGCATGGGGCAGACATGATGGCTAAGAACCTGgtaagtctgttcctcgaggcttgatggtttggggtgcccttgcatggtgg Alignment from Exonerate_coding2genome GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTC-TTGCATGGGGCGGACATGATGGCTAAGAACCTG cctacccacccactgacctcaagggttgctttcctgtgctcccattacagGAAGGGGACAGTGCCCTACATGATGCTGTGAGGCTCAACCGCTACAAAATCATCAAACTGCTGCTCCTTGCATGGGGCAGACATGATGGCTAAGAACCTGgtaagtctgttcctcgaggcttgatggtttggggtgcccttgcatggtgg Alignment from GeneWise GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTC-TTGCATGGGGCGGACATGATGGCTAAGAACCTG cctacccacccactgacctcaagggttgctttcctgtgctcccattacagGAAGGGGACAGTGCCCTACATGATGCTGTGAGGCTCAACCGCTACAAAATCATCAAACTGCTGCTCCTTGCATGGGGCAGACATGATGGCTAAGAACCTGgtaagtctgttcctcgaggcttgatggtttggggtgcccttgcatggtgg #### BC049760_ID1437_2 --> 0 - 2 Original Alignment CCATCTTCAGAGCCAGCA-TTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGac gggttggatgcctcatgctgttcagtttaatcgtagtgttacatttgtagCCATCTTCCGAGCCAGCACTTGGATGAACAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCAATAGATGATGAGACAacgtaagtctgcctgaaaagttgcctgaatagtgtgtcttattagtgaggaa Alignment from CESAR CCATCTTCAGAGCCAGCA-TTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGac gggttggatgcctcatgctgttcagtttaatcgtagtgttacatttgtagCCATCTTCCGAGCCAGCACTTGGATGAACAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCAATAGATGATGAGACAacgtaagtctgcctgaaaagttgcctgaatagtgtgtcttattagtgaggaa Alignment from Spaln_aa2Genome CCATCTTCAGAGCCAGCA-TTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGAC gggttggatgcctcatgctgttcagtttaatcgtagtgttacatttgtagCCATCTTCCGAGCCAGCAcTTGGATGAACAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCAATAGATGATGAGACAACgtaagtctgcctgaaaagttgcctgaatagtgtgtcttattagtgaggaa Alignment from Spaln_nt2Genome CCATCTTCAGAGCCAGCA-TTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGAC gggttggatgcctcatgctgttcagtttaatcgtagtgttacatttgtagCCATCTTCCGAGCCAGCACTTGGATGAACAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCAATAGATGATGAGACAACgtaagtctgcctgaaaagttgcctgaatagtgtgtcttattagtgaggaa Alignment from Pairagon CCATCTTCAGAGCCAGCA-TTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGAC gggttggatgcctcatgctgttcagtttaatcgtagtgttacatttgtagCCATCTTCCGAGCCAGCACTTGGATGAACAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCAATAGATGATGAGACAACgtaagtctgcctgaaaagttgcctgaatagtgtgtcttattagtgaggaa Alignment from Exonerate_protein2genome CCATCTTCAGAGCCAGCA-TTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGAC gggttggatgcctcatgctgttcagtttaatcgtagtgttacatttgtagCCATCTTCCGAGCCAGCACTTGGATGAACAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCAATAGATGATGAGACAACgtaagtctgcctgaaaagttgcctgaatagtgtgtcttattagtgaggaa Alignment from Exonerate_coding2genome CCATCTTCAGAGCCAGCA-TTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGAC gggttggatgcctcatgctgttcagtttaatcgtagtgttacatttgtagCCATCTTCCGAGCCAGCACTTGGATGAACAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCAATAGATGATGAGACAACgtaagtctgcctgaaaagttgcctgaatagtgtgtcttattagtgaggaa Alignment from GeneWise CCATCTTCAGAGCCA-GCATTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGAC gggttggatgcctcatgctgttcagtttaatcgtagtgttacatttgtagCCATCTTCCGAGCCAGCACTTGGATGAACAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCAATAGATGATGAGACAACgtaagtctgcctgaaaagttgcctgaatagtgtgtcttattagtgaggaa #### Bbs1_ID718_16 --> 0 - 0 Original Alignment GTTCCCTTGCTG-GTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggtgtgtgggctttgaggggcaagtgtttcacttgtgtgttgcagGTTCCCTTGCTGCGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagtggctacttcgggggcaagtgggaccctggggaagcagtagggtg Alignment from CESAR GTTCCCTTGCTG-GTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggtgtgtgggctttgaggggcaagtgtttcacttgtgtgttgcagGTTCCCTTGCTGCGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagtggctacttcgggggcaagtgggaccctggggaagcagtagggtg Alignment from Spaln_aa2Genome GTTCCCTTGCTG-GTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggtgtgtgggctttgaggggcaagtgtttcacttgtgtgttgcagGTTCCCTTGCTGcGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagtggctacttcgggggcaagtgggaccctggggaagcagtagggtg Alignment from Spaln_nt2Genome GTTCCCTTGCTG-GTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggtgtgtgggctttgaggggcaagtgtttcacttgtgtgttgcagGTTCCCTTGCTGCGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagtggctacttcgggggcaagtgggaccctggggaagcagtagggtg Alignment from Pairagon GTTCCCTTGCTG-GTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggtgtgtgggctttgaggggcaagtgtttcacttgtgtgttgcagGTTCCCTTGCTGCGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagtggctacttcgggggcaagtgggaccctggggaagcagtagggtg Alignment from Exonerate_protein2genome GTTCCCTTGCTG-GTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggtgtgtgggctttgaggggcaagtgtttcacttgtgtgttgcagGTTCCCTTGCTGCGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagtggctacttcgggggcaagtgggaccctggggaagcagtagggtg Alignment from Exonerate_coding2genome GTTCCCTTGCTGGT-ACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggtgtgtgggctttgaggggcaagtgtttcacttgtgtgttgcagGTTCCCTTGCTGCGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagtggctacttcgggggcaagtgggaccctggggaagcagtagggtg Alignment from GeneWise GTTCCCTTGCTG-GTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggtgtgtgggctttgaggggcaagtgtttcacttgtgtgttgcagGTTCCCTTGCTGCGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagtggctacttcgggggcaagtgggaccctggggaagcagtagggtg #### Bbs1_ID729_5 --> 0 - 2 Original Alignment GACCAGATTGACCCCTTAACCCTGAAGGAG-ATGCTGGAGGACATCag tcatggctgccagagctcacagcctcaccgacttttctatcctttcttagGACCAGATTGACCCCTTGACCCTGAAAGAGCATGCTGGAGGACATCaggtattagctcacctttcctcttggtgccccttcatcccaaaactctccta Alignment from CESAR GACCAGATTGACCCCTTAACCCTGAAGGAG-ATGCTGGAGGACATCag tcatggctgccagagctcacagcctcaccgacttttctatcctttcttagGACCAGATTGACCCCTTGACCCTGAAAGAGCATGCTGGAGGACATCaggtattagctcacctttcctcttggtgccccttcatcccaaaactctccta Alignment from Spaln_aa2Genome GACCAGATTGACCCCTTAACCCTGAAGGAG-ATGCTGGAGGACATCAG tcatggctgccagagctcacagcctcaccgacttttctatcctttcttagGACCAGATTGACCCCTTGACCCTGAAAGAGcATGCTGGAGGACATCAGgtattagctcacctttcctcttggtgccccttcatcccaaaactctccta Alignment from Spaln_nt2Genome GACCAGATTGACCCCTTAACCCTGAAGGAG-ATGCTGGAGGACATCAG tcatggctgccagagctcacagcctcaccgacttttctatcctttcttagGACCAGATTGACCCCTTGACCCTGAAAGAGCATGCTGGAGGACATCAGgtattagctcacctttcctcttggtgccccttcatcccaaaactctccta Alignment from Pairagon GACCAGATTGACCCCTTAACCCTGAAGGAG-ATGCTGGAGGACATC---------------------------------------------------- tcatggctgccagagctcacagcctcaccgacttttctatcctttcttagGACCAGATTGACCCCTTGACCCTGAAAGAGCATGCTGGAGGACATCAGGTATTAGCTCACCTTTCCTCTTGGTGCCCCTTCATCCCAAAACTCTCCTA Alignment from Exonerate_protein2genome GACCAGATTGACCCCTTAACCCTGAAGGAG-ATGCTGGAGGACATCAG tcatggctgccagagctcacagcctcaccgacttttctatcctttcttagGACCAGATTGACCCCTTGACCCTGAAAGAGCATGCTGGAGGACATCAGgtattagctcacctttcctcttggtgccccttcatcccaaaactctccta Alignment from Exonerate_coding2genome GACCAGATTGACCCCTTAACCCTGAAGGAGAT---GCTGGAGGACATCAG tcatggctgccagagctcacagcctcaccgacttttctatcctttcttagGACCAGATTGACCCCTTGACCCTGAAAGAG--CATGCTGGAGGACATCAGgtattagctcacctttcctcttggtgccccttcatcccaaaactctccta Alignment from GeneWise tcatggctgccagagctcacagcctcaccgacttttctatcctttcttaggaccagattgaccccttgaccctgaaagagcatgctggaggacatcaggtattagctcacctttcctcttggtgccccttcatcccaaaactctccta #### Bscl2_ID2425_8 --> 0 - 1 Original Alignment GTTAATATCCGACAAAGGGATAAC-TCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAg tgctgcggaggggagtcaggcctcactgactctgctcccttctgttgcagGTTAATACCCGACAAAGGGATAACCTCACACCACGGGGCCCCGCATCGCATCTCACGCCATCAGCCAggtagggtggttggttgatagatccttgaagggtaggctggctgggcaaga Alignment from CESAR GTTAATATCCGACAAAGGGATAAC-TCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAg tgctgcggaggggagtcaggcctcactgactctgctcccttctgttgcagGTTAATACCCGACAAAGGGATAACCTCACACCACGGGGCCCCGCATCGCATCTCACGCCATCAGCCAggtagggtggttggttgatagatccttgaagggtaggctggctgggcaaga Alignment from Spaln_aa2Genome GTTAATATCCGACAAAGGGATAAC-TCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG tgctgcggaggggagtcaggcctcactgactctgctcccttctgttgcagGTTAATACCCGACAAAGGGATAACcTCACACCACGGGGCCCCGCATCGCATCTCACGCCATCAGCCAGgtagggtggttggttgatagatccttgaagggtaggctggctgggcaaga Alignment from Spaln_nt2Genome GTTAATATCCGACAAAGGGATAA-CTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG tgctgcggaggggagtcaggcctcactgactctgctcccttctgttgcagGTTAATACCCGACAAAGGGATAACCTCACACCACGGGGCCCCGCATCGCATCTCACGCCATCAGCCAGgtagggtggttggttgatagatccttgaagggtaggctggctgggcaaga Alignment from Pairagon GTTAATATCCGACAAAGGGATAA-CTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG tgctgcggaggggagtcaggcctcactgactctgctcccttctgttgcagGTTAATACCCGACAAAGGGATAACCTCACACCACGGGGCCCCGCATCGCATCTCACGCCATCAGCCAGgtagggtggttggttgatagatccttgaagggtaggctggctgggcaaga Alignment from Exonerate_protein2genome GTTAATATCCGACAAAGGGATAAC-TCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG tgctgcggaggggagtcaggcctcactgactctgctcccttctgttgcagGTTAATACCCGACAAAGGGATAACCTCACACCACGGGGCCCCGCATCGCATCTCACGCCATCAGCCAGgtagggtggttggttgatagatccttgaagggtaggctggctgggcaaga Alignment from Exonerate_coding2genome GTTAATATCCGACAAAGGGATAAC-TCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG tgctgcggaggggagtcaggcctcactgactctgctcccttctgttgcagGTTAATACCCGACAAAGGGATAACCTCACACCACGGGGCCCCGCATCGCATCTCACGCCATCAGCCAGgtagggtggttggttgatagatccttgaagggtaggctggctgggcaaga Alignment from GeneWise GTTAATATCCGACAAAGGGATAAC-TCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAGGTCAG tgctgcggaggggagtcaggcctcactgactctgctcccttctgttgcagGTTAATACCCGACAAAGGGATAACCTCACACCACGGGGCCCCGCATCGCATCTCACGCCATCAGCCAGGTAGGgtggttggttgatagatccttgaagggtaggctggctgggcaaga #### Bscl2_ID2426_9 --> 2 - 1 Original Alignment gtCAGGAATCTACCCAGCAG-TCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAg gctagggataacaacttccactaactgtgtgtgtctgtaatgaattccaggtCAGGAATCTACCCAGCAGCTCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGGACAggtaagttcagttcctctacctcgcgcctcatccccagcactcatctgcag Alignment from CESAR gtCAGGAATCTACCCAGCAG-TCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAg gctagggataacaacttccactaactgtgtgtgtctgtaatgaattccaggtCAGGAATCTACCCAGCAGCTCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGGACAggtaagttcagttcctctacctcgcgcctcatccccagcactcatctgcag Alignment from Spaln_aa2Genome GTCAGGAATCTACCCAGCAG-TCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAG gctagggataacaacttccactaactgtgtgtgtctgtaatgaattccagGTCAGGAATCTACCCAGCAGcTCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGGACAGgtaagttcagttcctctacctcgcgcctcatccccagcactcatctgcag Alignment from Spaln_nt2Genome GTCAGGAATCTACCCAGCAG-TCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAG gctagggataacaacttccactaactgtgtgtgtctgtaatgaattccagGTCAGGAATCTACCCAGCAGCTCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGGACAGgtaagttcagttcctctacctcgcgcctcatccccagcactcatctgcag Alignment from Pairagon GTCAGGAATCTACCCAGCAG-TCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAG gctagggataacaacttccactaactgtgtgtgtctgtaatgaattccagGTCAGGAATCTACCCAGCAGCTCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGGACAGgtaagttcagttcctctacctcgcgcctcatccccagcactcatctgcag Alignment from Exonerate_protein2genome GTCAGGAATCTACCCAGCAG-TCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAG gctagggataacaacttccactaactgtgtgtgtctgtaatgaattccagGTCAGGAATCTACCCAGCAGCTCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGGACAGgtaagttcagttcctctacctcgcgcctcatccccagcactcatctgcag Alignment from Exonerate_coding2genome GTCAGGAATCTACCCAGCAG-TCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAG gctagggataacaacttccactaactgtgtgtgtctgtaatgaattccagGTCAGGAATCTACCCAGCAGCTCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGGACAGgtaagttcagttcctctacctcgcgcctcatccccagcactcatctgcag Alignment from GeneWise ------GAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGAACAG gctagggataacaacttccactaactgtgtgtgtctgtaatgaattccagGTCAGGAATCTACCCAGCAGCTCGGATGTGACGGAGGATGGTGAGAGCCCTGAAGATCCCTCAGGGACAGgtaagttcagttcctctacctcgcgcctcatccccagcactcatctgcag #### Bscl2_ID2427_10 --> 2 - 1 Original Alignment agGGCCAGCTGTCTGAGGAA-GAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATg agtgcctggctctcaccttctgtctcaccactgtcttatcctcaccctagagGGCCAGCTGTCAGAGGAACGAGAAACCAAAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATggtacgtgcaccatgtgatgggcaggggcactgtgtggtggggagggcact Alignment from CESAR agGGCCAGCTGTCTGAGGAA-GAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATg agtgcctggctctcaccttctgtctcaccactgtcttatcctcaccctagagGGCCAGCTGTCAGAGGAACGAGAAACCAAAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATggtacgtgcaccatgtgatgggcaggggcactgtgtggtggggagggcact Alignment from Spaln_aa2Genome AGGGCCAGCTGTCTGAGGAA-GAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG agtgcctggctctcaccttctgtctcaccactgtcttatcctcaccctagAGGGCCAGCTGTCAGAGGAAcGAGAAACCAAAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATGgtacgtgcaccatgtgatgggcaggggcactgtgtggtggggagggcact Alignment from Spaln_nt2Genome AGGGCCAGCTGTCTGAGGAA-GAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG agtgcctggctctcaccttctgtctcaccactgtcttatcctcaccctagAGGGCCAGCTGTCAGAGGAACGAGAAACCAAAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATGgtacgtgcaccatgtgatgggcaggggcactgtgtggtggggagggcact Alignment from Pairagon AGGGCCAGCTGTCTGAGGAA-GAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG agtgcctggctctcaccttctgtctcaccactgtcttatcctcaccctagAGGGCCAGCTGTCAGAGGAACGAGAAACCAAAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATGgtacgtgcaccatgtgatgggcaggggcactgtgtggtggggagggcact Alignment from Exonerate_protein2genome AGGGCCAGCTGTCTGAGGAA-GAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG agtgcctggctctcaccttctgtctcaccactgtcttatcctcaccctagAGGGCCAGCTGTCAGAGGAACGAGAAACCAAAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATGgtacgtgcaccatgtgatgggcaggggcactgtgtggtggggagggcact Alignment from Exonerate_coding2genome AGGGCCAGCTGTCTGAGGAA-GAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG agtgcctggctctcaccttctgtctcaccactgtcttatcctcaccctagAGGGCCAGCTGTCAGAGGAACGAGAAACCAAAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATGgtacgtgcaccatgtgatgggcaggggcactgtgtggtggggagggcact Alignment from GeneWise AGGGCCAGCTGTCTGAG-GAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG agtgcctggctctcaccttctgtctcaccactgtcttatcctcaccctagAGGGCCAGCTGTCAGAGGAACGAGAAACCAAAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATGgtacgtgcaccatgtgatgggcaggggcactgtgtggtggggagggcact #### C030046E11Rik_ID6311_25 --> 1 - 2 Original Alignment cTATTTGCTGCACATTTTCATGGAGGCGGGATGT-CTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACtg gtcagctgttgttgttcatacagatcctatgtctgttactcttgatgcagcTATTTGCTGCACATTTACATGGAGGCAGGATGTCCTGGACTGGTGTGTTGTCATTGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTCCTGGGATGGATGGAGAGATGTTACAGAACATAAAATCAGGACTGCAAGCAGTGGATCGCTGGGCCTCAACAGACtggtgagtgaatgctgctttctataataggcctggtatcccttggcaaatga Alignment from CESAR cTATTTGCTGCACATTTTCATGGAGGCGGGATGT-CTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACtg gtcagctgttgttgttcatacagatcctatgtctgttactcttgatgcagcTATTTGCTGCACATTTACATGGAGGCAGGATGTCCTGGACTGGTGTGTTGTCATTGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTCCTGGGATGGATGGAGAGATGTTACAGAACATAAAATCAGGACTGCAAGCAGTGGATCGCTGGGCCTCAACAGACtggtgagtgaatgctgctttctataataggcctggtatcccttggcaaatga Alignment from Spaln_aa2Genome CTATTTGCTGCACATTTTCATGGAGGCGGGATGT-CTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG gtcagctgttgttgttcatacagatcctatgtctgttactcttgatgcagCTATTTGCTGCACATTTACATGGAGGCAGGATGTcCTGGACTGGTGTGTTGTCATTGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTCCTGGGATGGATGGAGAGATGTTACAGAACATAAAATCAGGACTGCAAGCAGTGGATCGCTGGGCCTCAACAGACTGgtgagtgaatgctgctttctataataggcctggtatcccttggcaaatga Alignment from Spaln_nt2Genome CTATTTGCTGCACATTTTCATGGAGGCGGGATGTC-TGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG gtcagctgttgttgttcatacagatcctatgtctgttactcttgatgcagCTATTTGCTGCACATTTACATGGAGGCAGGATGTCCTGGACTGGTGTGTTGTCATTGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTCCTGGGATGGATGGAGAGATGTTACAGAACATAAAATCAGGACTGCAAGCAGTGGATCGCTGGGCCTCAACAGACTGgtgagtgaatgctgctttctataataggcctggtatcccttggcaaatga Alignment from Pairagon CTATTTGCTGCACATTTTCATGGAGGCGGGATGT-CTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG gtcagctgttgttgttcatacagatcctatgtctgttactcttgatgcagCTATTTGCTGCACATTTACATGGAGGCAGGATGTCCTGGACTGGTGTGTTGTCATTGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTCCTGGGATGGATGGAGAGATGTTACAGAACATAAAATCAGGACTGCAAGCAGTGGATCGCTGGGCCTCAACAGACTGgtgagtgaatgctgctttctataataggcctggtatcccttggcaaatga Alignment from Exonerate_protein2genome CTATTTGCTGCACATTTTCATGGAGGCGGGATGT-CTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG gtcagctgttgttgttcatacagatcctatgtctgttactcttgatgcagCTATTTGCTGCACATTTACATGGAGGCAGGATGTCCTGGACTGGTGTGTTGTCATTGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTCCTGGGATGGATGGAGAGATGTTACAGAACATAAAATCAGGACTGCAAGCAGTGGATCGCTGGGCCTCAACAGACTGgtgagtgaatgctgctttctataataggcctggtatcccttggcaaatga Alignment from Exonerate_coding2genome CTATTTGCTGCACATTTTCATGGAGGCGGGATGT-CTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG gtcagctgttgttgttcatacagatcctatgtctgttactcttgatgcagCTATTTGCTGCACATTTACATGGAGGCAGGATGTCCTGGACTGGTGTGTTGTCATTGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTCCTGGGATGGATGGAGAGATGTTACAGAACATAAAATCAGGACTGCAAGCAGTGGATCGCTGGGCCTCAACAGACTGgtgagtgaatgctgctttctataataggcctggtatcccttggcaaatga Alignment from GeneWise CTATTTGCTGCACATTTTCATGGAGGCGGGATGT-CTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG gtcagctgttgttgttcatacagatcctatgtctgttactcttgatgcagCTATTTGCTGCACATTTACATGGAGGCAGGATGTCCTGGACTGGTGTGTTGTCATTGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTTGGGATTGCTCAGTCTCCTGGGATGGATGGAGAGATGTTACAGAACATAAAATCAGGACTGCAAGCAGTGGATCGCTGGGCCTCAACAGACTGgtgagtgaatgctgctttctataataggcctggtatcccttggcaaatga #### Cabp2_ID290_5 --> 2 - 0 Original Alignment gtGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATT-GGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG cataggtcagacactcgactaggctatcttcatgtaaatctgtaacacaggtGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTACTGGTAGAGACAGCAGACATGATTCGGCGAGAGGGAGCTTCGAGATGCCTTCAGGGAGgtatgtcttgggtgaggggtggcgagggtcagtgagattgtgggtctgca Alignment from CESAR gtGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATT-GGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG cataggtcagacactcgactaggctatcttcatgtaaatctgtaacacaggtGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTACTGGTAGAGACAGCAGACATGATTCGGCGAGAGGGAGCTTCGAGATGCCTTCAGGGAGgtatgtcttgggtgaggggtggcgagggtcagtgagattgtgggtctgca Alignment from Spaln_aa2Genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATT-GGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG cataggtcagacactcgactaggctatcttcatgtaaatctgtaacacagGTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTACTGGTAGAGACAGCAGACATGATTcGGCGAGAGGGAGCTTCGAGATGCCTTCAGGGAGgtatgtcttgggtgaggggtggcgagggtcagtgagattgtgggtctgca Alignment from Spaln_nt2Genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATT-GGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG cataggtcagacactcgactaggctatcttcatgtaaatctgtaacacagGTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTACTGGTAGAGACAGCAGACATGATTCGGCGAGAGGGAGCTTCGAGATGCCTTCAGGGAGgtatgtcttgggtgaggggtggcgagggtcagtgagattgtgggtctgca Alignment from Pairagon GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATT-GGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG cataggtcagacactcgactaggctatcttcatgtaaatctgtaacacagGTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTACTGGTAGAGACAGCAGACATGATTCGGCGAGAGGGAGCTTCGAGATGCCTTCAGGGAGgtatgtcttgggtgaggggtggcgagggtcagtgagattgtgggtctgca Alignment from Exonerate_protein2genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATT-GGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG cataggtcagacactcgactaggctatcttcatgtaaatctgtaacacagGTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTACTGGTAGAGACAGCAGACATGATTCGGCGAGAGGGAGCTTCGAGATGCCTTCAGGGAGgtatgtcttgggtgaggggtggcgagggtcagtgagattgtgggtctgca Alignment from Exonerate_coding2genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATT-GGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG cataggtcagacactcgactaggctatcttcatgtaaatctgtaacacagGTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTACTGGTAGAGACAGCAGACATGATTCGGCGAGAGGGAGCTTCGAGATGCCTTCAGGGAGgtatgtcttgggtgaggggtggcgagggtcagtgagattgtgggtctgca Alignment from GeneWise GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATG-ATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG cataggtcagacactcgactaggctatcttcatgtaaatctgtaacacagGTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTACTGGTAGAGACAGCAGACATGATTCGGCGAGAGGGAGCTTCGAGATGCCTTCAGGGAGgtatgtcttgggtgaggggtggcgagggtcagtgagattgtgggtctgca #### Cabp2_ID291_6 --> 0 - 1 Original Alignment TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGG-GAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAg gagtggattcagggctcagtcagtgatccggcttccttccttctgagcagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTCCAGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGCGAAGTAGATGAGATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAggtacgactccccctacttagccacatataccctcaagggttctaaaccag Alignment from CESAR TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGG-GAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAg gagtggattcagggctcagtcagtgatccggcttccttccttctgagcagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTCCAGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGCGAAGTAGATGAGATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAggtacgactccccctacttagccacatataccctcaagggttctaaaccag Alignment from Spaln_aa2Genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGG-GAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gagtggattcagggctcagtcagtgatccggcttccttccttctgagcagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTCCAGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGcGAAGTAGATGAGATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAGgtacgactccccctacttagccacatataccctcaagggttctaaaccag Alignment from Spaln_nt2Genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGG-GAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gagtggattcagggctcagtcagtgatccggcttccttccttctgagcagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTCCAGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGCGAAGTAGATGAGATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAGgtacgactccccctacttagccacatataccctcaagggttctaaaccag Alignment from Pairagon TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGG-GAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gagtggattcagggctcagtcagtgatccggcttccttccttctgagcagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTCCAGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGCGAAGTAGATGAGATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAGgtacgactccccctacttagccacatataccctcaagggttctaaaccag Alignment from Exonerate_protein2genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGG-GAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gagtggattcagggctcagtcagtgatccggcttccttccttctgagcagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTCCAGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGCGAAGTAGATGAGATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAGgtacgactccccctacttagccacatataccctcaagggttctaaaccag Alignment from Exonerate_coding2genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGG-GAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAA gagtggattcagggctcagtcagtgatccggcttccttccttctgagcagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTCCAGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGCGAAGTAGATGAGATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAggtacgactccccctacttagccacatataccctcaagggttctaaaccag Alignment from GeneWise TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGG-GAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAA gagtggattcagggctcagtcagtgatccggcttccttccttctgagcagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTCCAGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGCGAAGTAGATGAGATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAggtacgactccccctacttagccacatataccctcaagggttctaaaccag #### Cabp4_ID342_2 --> 0 - 1 Original Alignment GATCGTGAACTG-GGCCCTGAGGAGTTGGAGg gaggctagaggaggtggcaaatggagacctctttttgcttcctttctcagGATCGTGAACTGCGGCCCTGAGGAGTTGGAGggtacatgtccctcactgttgctgggaggtggaaagtaaccttggtgcggt Alignment from CESAR GATCGTGAACTG-GGCCCTGAGGAGTTGGAGg gaggctagaggaggtggcaaatggagacctctttttgcttcctttctcagGATCGTGAACTGCGGCCCTGAGGAGTTGGAGggtacatgtccctcactgttgctgggaggtggaaagtaaccttggtgcggt Alignment from Spaln_aa2Genome GATCGTGAACTG-GGCCCTGAGGAGTTGGAGG gaggctagaggaggtggcaaatggagacctctttttgcttcctttctcagGATCGTGAACTGcGGCCCTGAGGAGTTGGAGGgtacatgtccctcactgttgctgggaggtggaaagtaaccttggtgcggt Alignment from Spaln_nt2Genome GATCGTGAACTG-GGCCCTGAGGAGTTGGAGG gaggctagaggaggtggcaaatggagacctctttttgcttcctttctcagGATCGTGAACTGCGGCCCTGAGGAGTTGGAGGgtacatgtccctcactgttgctgggaggtggaaagtaaccttggtgcggt Alignment from Pairagon GATCGTGAACTG-GGCCCTGAGGAGTTGGAGG gaggctagaggaggtggcaaatggagacctctttttgcttcctttctcagGATCGTGAACTGCGGCCCTGAGGAGTTGGAGGgtacatgtccctcactgttgctgggaggtggaaagtaaccttggtgcggt Alignment from Exonerate_protein2genome GATCGTGAACTG-GGCCCTGAGGAGTTGGAGG gaggctagaggaggtggcaaatggagacctctttttgcttcctttctcagGATCGTGAACTGCGGCCCTGAGGAGTTGGAGGgtacatgtccctcactgttgctgggaggtggaaagtaaccttggtgcggt Alignment from Exonerate_coding2genome gaggctagaggaggtggcaaatggagacctctttttgcttcctttctcaggatcgtgaactgcggccctgaggagttggagggtacatgtccctcactgttgctgggaggtggaaagtaaccttggtgcggt Alignment from GeneWise gaggctagaggaggtggcaaatggagacctctttttgcttcctttctcaggatcgtgaactgcggccctgaggagttggagggtacatgtccctcactgttgctgggaggtggaaagtaaccttggtgcggt #### Capn1_ID1359_17 --> 0 - 0 Original Alignment CGAGATGGCAACGGGAAGCTGGGT-CTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacataagtactttaagccaagtagttgcagtttctcttggttctcagCGAGATGGCAATGGGAAGCTGGGTCCTGGTGGAGTTCAACATCCTATGGAACCACATCCGAAATTATCTGgtgagtggcaggaggttccctggctgggttctactggccctctgtggcct Alignment from CESAR CGAGATGGCAACGGGAAGCTGGGT-CTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacataagtactttaagccaagtagttgcagtttctcttggttctcagCGAGATGGCAATGGGAAGCTGGGTCCTGGTGGAGTTCAACATCCTATGGAACCACATCCGAAATTATCTGgtgagtggcaggaggttccctggctgggttctactggccctctgtggcct Alignment from Spaln_aa2Genome CGAGATGGCAACGGGAAGCTGGGT-CTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacataagtactttaagccaagtagttgcagtttctcttggttctcagCGAGATGGCAATGGGAAGCTGGGTcCTGGTGGAGTTCAACATCCTATGGAACCACATCCGAAATTATCTGgtgagtggcaggaggttccctggctgggttctactggccctctgtggcct Alignment from Spaln_nt2Genome CGAGATGGCAACGGGAAGCT-GGGTCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacataagtactttaagccaagtagttgcagtttctcttggttctcagCGAGATGGCAATGGGAAGCTGGGTCCTGGTGGAGTTCAACATCCTATGGAACCACATCCGAAATTATCTGgtgagtggcaggaggttccctggctgggttctactggccctctgtggcct Alignment from Pairagon CGAGATGGCAACGGGAAGCTGGGT-CTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacataagtactttaagccaagtagttgcagtttctcttggttctcagCGAGATGGCAATGGGAAGCTGGGTCCTGGTGGAGTTCAACATCCTATGGAACCACATCCGAAATTATCTGgtgagtggcaggaggttccctggctgggttctactggccctctgtggcct Alignment from Exonerate_protein2genome CGAGATGGCAACGGGAAGCTGGGT-CTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacataagtactttaagccaagtagttgcagtttctcttggttctcagCGAGATGGCAATGGGAAGCTGGGTCCTGGTGGAGTTCAACATCCTATGGAACCACATCCGAAATTATCTGgtgagtggcaggaggttccctggctgggttctactggccctctgtggcct Alignment from Exonerate_coding2genome CGAGATGGCAACGGGAAGCTGGGT-CTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacataagtactttaagccaagtagttgcagtttctcttggttctcagCGAGATGGCAATGGGAAGCTGGGTCCTGGTGGAGTTCAACATCCTATGGAACCACATCCGAAATTATCTGgtgagtggcaggaggttccctggctgggttctactggccctctgtggcct Alignment from GeneWise CGAGATGGCAACGGGAAGCTGGGT-CTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGAAATTACCTG ctcacataagtactttaagccaagtagttgcagtttctcttggttctcagCGAGATGGCAATGGGAAGCTGGGTCCTGGTGGAGTTCAACATCCTATGGAACCACATCCGAAATTATCTGgtgagtggcaggaggttccctggctgggttctactggccctctgtggcct #### Capn1_ID1362_14 --> 0 - 0 Original Alignment AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACC-TTGTTCAGCAAGTTGGCAGGGGAT agtgctaggcctcaatagccttaacctatctctctgccttgtcattacagAAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACCCTTGTTCAGCAAGTTGGCAGGGGATgtgagtcaaggcctggtaagtatgataagatggggatcccctgtgtgaag Alignment from CESAR AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACC-TTGTTCAGCAAGTTGGCAGGGGAT agtgctaggcctcaatagccttaacctatctctctgccttgtcattacagAAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACCCTTGTTCAGCAAGTTGGCAGGGGATgtgagtcaaggcctggtaagtatgataagatggggatcccctgtgtgaag Alignment from Spaln_aa2Genome AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACC-TTGTTCAGCAAGTTGGCAGGGGAT agtgctaggcctcaatagccttaacctatctctctgccttgtcattacagAAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACCcTTGTTCAGCAAGTTGGCAGGGGATgtgagtcaaggcctggtaagtatgataagatggggatcccctgtgtgaag Alignment from Spaln_nt2Genome AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGA-CCTTGTTCAGCAAGTTGGCAGGGGAT agtgctaggcctcaatagccttaacctatctctctgccttgtcattacagAAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACCCTTGTTCAGCAAGTTGGCAGGGGATgtgagtcaaggcctggtaagtatgataagatggggatcccctgtgtgaag Alignment from Pairagon AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGA-CCTTGTTCAGCAAGTTGGCAGGGGAT agtgctaggcctcaatagccttaacctatctctctgccttgtcattacagAAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACCCTTGTTCAGCAAGTTGGCAGGGGATgtgagtcaaggcctggtaagtatgataagatggggatcccctgtgtgaag Alignment from Exonerate_protein2genome AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACC-TTGTTCAGCAAGTTGGCAGGGGAT agtgctaggcctcaatagccttaacctatctctctgccttgtcattacagAAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACCCTTGTTCAGCAAGTTGGCAGGGGATgtgagtcaaggcctggtaagtatgataagatggggatcccctgtgtgaag Alignment from Exonerate_coding2genome AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACC-TTGTTCAGCAAGTTGGCAGGGGAT agtgctaggcctcaatagccttaacctatctctctgccttgtcattacagAAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACCCTTGTTCAGCAAGTTGGCAGGGGATgtgagtcaaggcctggtaagtatgataagatggggatcccctgtgtgaag Alignment from GeneWise AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACCTTG------------------------------------------------------------------------ agtgctaggcctcaatagccttaacctatctctctgccttgtcattacagAAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAGACCCTTGTTCAGCAAGTTGGCAGGGGATGTGAGTCAAGGCCTGGTAAGTATGATAAGATGGGGATCCCCTGTGTGAAG #### Capn1_ID1363_13 --> 1 - 0 Original Alignment gGAACTAGATGACCAGATCCAGGCCAAC-CTCCCTGATGAG ctccctatgtccccaggcccctctgactcctacaccttgtctcactgcaggGAACTAGATGACCAGATTCAGGCCAACCCTCCCTGATGAGgtaagcagtccctttgtctcccctggtattcaatgggaggtgggctccag Alignment from CESAR gGAACTAGATGACCAGATCCAGGCCAAC-CTCCCTGATGAG ctccctatgtccccaggcccctctgactcctacaccttgtctcactgcaggGAACTAGATGACCAGATTCAGGCCAACCCTCCCTGATGAGgtaagcagtccctttgtctcccctggtattcaatgggaggtgggctccag Alignment from Spaln_aa2Genome GGAACTAGATGACCAGATCCAGGCCAAC-CTCCCTGATGAG ctccctatgtccccaggcccctctgactcctacaccttgtctcactgcagGGAACTAGATGACCAGATTCAGGCCAACcCTCCCTGATGAGgtaagcagtccctttgtctcccctggtattcaatgggaggtgggctccag Alignment from Spaln_nt2Genome GGAACTAGATGACCAGATCCAGGCCAACC-TCCCTGATGAG ctccctatgtccccaggcccctctgactcctacaccttgtctcactgcagGGAACTAGATGACCAGATTCAGGCCAACCCTCCCTGATGAGgtaagcagtccctttgtctcccctggtattcaatgggaggtgggctccag Alignment from Pairagon GGAACTAGATGACCAGATCCAGGCCAA-CCTCCCTGATGAG ctccctatgtccccaggcccctctgactcctacaccttgtctcactgcagGGAACTAGATGACCAGATTCAGGCCAACCCTCCCTGATGAGgtaagcagtccctttgtctcccctggtattcaatgggaggtgggctccag Alignment from Exonerate_protein2genome GGAACTAGATGACCAGATCCAGGCCAAC-CTCCCTGATGAG ctccctatgtccccaggcccctctgactcctacaccttgtctcactgcagGGAACTAGATGACCAGATTCAGGCCAACCCTCCCTGATGAGgtaagcagtccctttgtctcccctggtattcaatgggaggtgggctccag Alignment from Exonerate_coding2genome GGAACTAGATGACCAGATCCAGGCCAAC-CTCCCTGATGAG ctccctatgtccccaggcccctctgactcctacaccttgtctcactgcagGGAACTAGATGACCAGATTCAGGCCAACCCTCCCTGATGAGgtaagcagtccctttgtctcccctggtattcaatgggaggtgggctccag Alignment from GeneWise GGAACTAGATGACCAGATCCAGGCCAAC-CTCCCTGATGAG ctccctatgtccccaggcccctctgactcctacaccttgtctcactgcagGGAACTAGATGACCAGATTCAGGCCAACCCTCCCTGATGAGgtaagcagtccctttgtctcccctggtattcaatgggaggtgggctccag #### Capn1_ID1376_2 --> 0 - 1 Original Alignment GAACTGATGTCAAACCCCCAGTTC-ATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGg ttctaggacgcctcaaataaggtcccaggaccttccttcctcgctggcagGAACTGATGTCAAACCCCCAGTTCCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGggtgaggccccgggggtggggttctgggtgtttgccccatgttctctgttc Alignment from CESAR GAACTGATGTCAAACCCCCAGTTC-ATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGg ttctaggacgcctcaaataaggtcccaggaccttccttcctcgctggcagGAACTGATGTCAAACCCCCAGTTCCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGggtgaggccccgggggtggggttctgggtgtttgccccatgttctctgttc Alignment from Spaln_aa2Genome GAACTGATGTCAAACCCCCAGTTC-ATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG ttctaggacgcctcaaataaggtcccaggaccttccttcctcgctggcagGAACTGATGTCAAACCCCCAGTTCcATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGGgtgaggccccgggggtggggttctgggtgtttgccccatgttctctgttc Alignment from Spaln_nt2Genome GAACTGATGTCAAACCCCCAGTT-CATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG ttctaggacgcctcaaataaggtcccaggaccttccttcctcgctggcagGAACTGATGTCAAACCCCCAGTTCCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGGgtgaggccccgggggtggggttctgggtgtttgccccatgttctctgttc Alignment from Pairagon GAACTGATGTCAAACCCCCAGTT-CATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG ttctaggacgcctcaaataaggtcccaggaccttccttcctcgctggcagGAACTGATGTCAAACCCCCAGTTCCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGGgtgaggccccgggggtggggttctgggtgtttgccccatgttctctgttc Alignment from Exonerate_protein2genome GAACTGATGTCAAACCCCCAGTTC-ATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG ttctaggacgcctcaaataaggtcccaggaccttccttcctcgctggcagGAACTGATGTCAAACCCCCAGTTCCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGGgtgaggccccgggggtggggttctgggtgtttgccccatgttctctgttc Alignment from Exonerate_coding2genome GAACTGATGTCAAACCCCCAGTTC-ATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG ttctaggacgcctcaaataaggtcccaggaccttccttcctcgctggcagGAACTGATGTCAAACCCCCAGTTCCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGGgtgaggccccgggggtggggttctgggtgtttgccccatgttctctgttc Alignment from GeneWise GAACTGATGTCAAACCCCCAGTTC-ATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG ttctaggacgcctcaaataaggtcccaggaccttccttcctcgctggcagGAACTGATGTCAAACCCCCAGTTCCATCGTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGGgtgaggccccgggggtggggttctgggtgtttgccccatgttctctgttc #### Carns1_ID388_4 --> 2 - 0 Original Alignment gaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTC-AGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG ggcaccaataagcatttcctggccagtccgctctctctggctttccctaggaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGACTGCTTCGGGGAGGGGATGCCAGCCCCGGACTCCGGCTGGTGGAACTCCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACACTCCGAGGCCTTGGGTGATGCTTCACAGgtcagtgcaggcctgggtgcccacaggagggaaccccaggttgtcattac Alignment from CESAR gaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTC-AGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG ggcaccaataagcatttcctggccagtccgctctctctggctttccctaggaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGACTGCTTCGGGGAGGGGATGCCAGCCCCGGACTCCGGCTGGTGGAACTCCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACACTCCGAGGCCTTGGGTGATGCTTCACAGgtcagtgcaggcctgggtgcccacaggagggaaccccaggttgtcattac Alignment from Spaln_aa2Genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTC-AGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG ggcaccaataagcatttcctggccagtccgctctctctggctttccctagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGACTGCTTCGGGGAGGGGATGCCAGCCCCGGACTCCGGCTGGTGGAACTCcAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACACTCCGAGGCCTTGGGTGATGCTTCACAGgtcagtgcaggcctgggtgcccacaggagggaaccccaggttgtcattac Alignment from Spaln_nt2Genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACT-CAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG ggcaccaataagcatttcctggccagtccgctctctctggctttccctagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGACTGCTTCGGGGAGGGGATGCCAGCCCCGGACTCCGGCTGGTGGAACTCCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACACTCCGAGGCCTTGGGTGATGCTTCACAGgtcagtgcaggcctgggtgcccacaggagggaaccccaggttgtcattac Alignment from Pairagon GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACT-CAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG ggcaccaataagcatttcctggccagtccgctctctctggctttccctagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGACTGCTTCGGGGAGGGGATGCCAGCCCCGGACTCCGGCTGGTGGAACTCCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACACTCCGAGGCCTTGGGTGATGCTTCACAGgtcagtgcaggcctgggtgcccacaggagggaaccccaggttgtcattac Alignment from Exonerate_protein2genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTC-AGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG ggcaccaataagcatttcctggccagtccgctctctctggctttccctagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGACTGCTTCGGGGAGGGGATGCCAGCCCCGGACTCCGGCTGGTGGAACTCCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACACTCCGAGGCCTTGGGTGATGCTTCACAGgtcagtgcaggcctgggtgcccacaggagggaaccccaggttgtcattac Alignment from Exonerate_coding2genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTC-AGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG ggcaccaataagcatttcctggccagtccgctctctctggctttccctagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGACTGCTTCGGGGAGGGGATGCCAGCCCCGGACTCCGGCTGGTGGAACTCCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACACTCCGAGGCCTTGGGTGATGCTTCACAGgtcagtgcaggcctgggtgcccacaggagggaaccccaggttgtcattac Alignment from GeneWise GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTC-AGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG ggcaccaataagcatttcctggccagtccgctctctctggctttccctagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGACTGCTTCGGGGAGGGGATGCCAGCCCCGGACTCCGGCTGGTGGAACTCCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACACTCCGAGGCCTTGGGTGATGCTTCACAGgtcagtgcaggcctgggtgcccacaggagggaaccccaggttgtcattac #### Catsper1_ID927_4 --> 2 - 2 Original Alignment acTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTC-CTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCag cttcttttgtttcacatcaccctaaaatttgccacccatcctctctccagacTTCTTCATTATGGTCATGGCAGTGCTGGACTTTGTACTACCTCCAGATAAACTCGCTCTCATACTCATTCTACAACCACAGCCTGTTCCGCATTCTCAAAGTCTTCAAAAGTATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCaggtgagaagcaccaaccctactcatgtttttggagagctctcaatgagaaa Alignment from CESAR acTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTC-CTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCag cttcttttgtttcacatcaccctaaaatttgccacccatcctctctccagacTTCTTCATTATGGTCATGGCAGTGCTGGACTTTGTACTACCTCCAGATAAACTCGCTCTCATACTCATTCTACAACCACAGCCTGTTCCGCATTCTCAAAGTCTTCAAAAGTATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCaggtgagaagcaccaaccctactcatgtttttggagagctctcaatgagaaa Alignment from Spaln_aa2Genome ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTC-CTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG cttcttttgtttcacatcaccctaaaatttgccacccatcctctctccagACTTCTTCATTATGGTCATGGCAGTGCTGGACTTTGTACTAcCTCCAGATAAACTCGCTCTCATACTCATTCTACAACCACAGCCTGTTCCGCATTCTCAAAGTCTTCAAAAGTATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCAGgtgagaagcaccaaccctactcatgtttttggagagctctcaatgagaaa Alignment from Spaln_nt2Genome ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCT-CCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG cttcttttgtttcacatcaccctaaaatttgccacccatcctctctccagACTTCTTCATTATGGTCATGGCAGTGCTGGACTTTGTACTACCTCCAGATAAACTCGCTCTCATACTCATTCTACAACCACAGCCTGTTCCGCATTCTCAAAGTCTTCAAAAGTATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCAGgtgagaagcaccaaccctactcatgtttttggagagctctcaatgagaaa Alignment from Pairagon ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCT-CCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG cttcttttgtttcacatcaccctaaaatttgccacccatcctctctccagACTTCTTCATTATGGTCATGGCAGTGCTGGACTTTGTACTACCTCCAGATAAACTCGCTCTCATACTCATTCTACAACCACAGCCTGTTCCGCATTCTCAAAGTCTTCAAAAGTATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCAGgtgagaagcaccaaccctactcatgtttttggagagctctcaatgagaaa Alignment from Exonerate_protein2genome ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTC-CTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG cttcttttgtttcacatcaccctaaaatttgccacccatcctctctccagACTTCTTCATTATGGTCATGGCAGTGCTGGACTTTGTACTACCTCCAGATAAACTCGCTCTCATACTCATTCTACAACCACAGCCTGTTCCGCATTCTCAAAGTCTTCAAAAGTATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCAGgtgagaagcaccaaccctactcatgtttttggagagctctcaatgagaaa Alignment from Exonerate_coding2genome ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTC-CTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG cttcttttgtttcacatcaccctaaaatttgccacccatcctctctccagACTTCTTCATTATGGTCATGGCAGTGCTGGACTTTGTACTACCTCCAGATAAACTCGCTCTCATACTCATTCTACAACCACAGCCTGTTCCGCATTCTCAAAGTCTTCAAAAGTATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCAGgtgagaagcaccaaccctactcatgtttttggagagctctcaatgagaaa Alignment from GeneWise ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTC-CTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG cttcttttgtttcacatcaccctaaaatttgccacccatcctctctccagACTTCTTCATTATGGTCATGGCAGTGCTGGACTTTGTACTACCTCCAGATAAACTCGCTCTCATACTCATTCTACAACCACAGCCTGTTCCGCATTCTCAAAGTCTTCAAAAGTATGAGGGCCCTGAGGGCCATTCGGGTTCTTCGGAGGCTCAGgtgagaagcaccaaccctactcatgtttttggagagctctcaatgagaaa #### Catsper1_ID931_8 --> 1 - 0 Original Alignment cCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAA-GGCCTAGAGAAAGTGAAGCTGGAG ggcctcttccttggtgtctcctttagagtttttttttttaaccttttcagcCTGGTGATTGCTGTCCTAGTAGATAACTTCCAGATGGCGTTGCTCAAACGGCCTAGAGAAAGTGAAGCTGGAGgtactgtgcacatggggcgatgactgggggggttggaagaatatcaatcc Alignment from CESAR cCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAA-GGCCTAGAGAAAGTGAAGCTGGAG ggcctcttccttggtgtctcctttagagtttttttttttaaccttttcagcCTGGTGATTGCTGTCCTAGTAGATAACTTCCAGATGGCGTTGCTCAAACGGCCTAGAGAAAGTGAAGCTGGAGgtactgtgcacatggggcgatgactgggggggttggaagaatatcaatcc Alignment from Spaln_aa2Genome CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAA-GGCCTAGAGAAAGTGAAGCTGGAG ggcctcttccttggtgtctcctttagagtttttttttttaaccttttcagCCTGGTGATTGCTGTCCTAGTAGATAACTTCCAGATGGCGTTGCTCAAAcGGCCTAGAGAAAGTGAAGCTGGAGgtactgtgcacatggggcgatgactgggggggttggaagaatatcaatcc Alignment from Spaln_nt2Genome CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAA-GGCCTAGAGAAAGTGAAGCTGGAG ggcctcttccttggtgtctcctttagagtttttttttttaaccttttcagCCTGGTGATTGCTGTCCTAGTAGATAACTTCCAGATGGCGTTGCTCAAACGGCCTAGAGAAAGTGAAGCTGGAGgtactgtgcacatggggcgatgactgggggggttggaagaatatcaatcc Alignment from Pairagon CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAA-GGCCTAGAGAAAGTGAAGCTGGAG ggcctcttccttggtgtctcctttagagtttttttttttaaccttttcagCCTGGTGATTGCTGTCCTAGTAGATAACTTCCAGATGGCGTTGCTCAAACGGCCTAGAGAAAGTGAAGCTGGAGgtactgtgcacatggggcgatgactgggggggttggaagaatatcaatcc Alignment from Exonerate_protein2genome CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAA-GGCCTAGAGAAAGTGAAGCTGGAG ggcctcttccttggtgtctcctttagagtttttttttttaaccttttcagCCTGGTGATTGCTGTCCTAGTAGATAACTTCCAGATGGCGTTGCTCAAACGGCCTAGAGAAAGTGAAGCTGGAGgtactgtgcacatggggcgatgactgggggggttggaagaatatcaatcc Alignment from Exonerate_coding2genome CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAA-GGCCTAGAGAAAGTGAAGCTGGAG ggcctcttccttggtgtctcctttagagtttttttttttaaccttttcagCCTGGTGATTGCTGTCCTAGTAGATAACTTCCAGATGGCGTTGCTCAAACGGCCTAGAGAAAGTGAAGCTGGAGgtactgtgcacatggggcgatgactgggggggttggaagaatatcaatcc Alignment from GeneWise CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTC-AAAGGCCTAGAGAAAGTGAAGCTGGAG ggcctcttccttggtgtctcctttagagtttttttttttaaccttttcagCCTGGTGATTGCTGTCCTAGTAGATAACTTCCAGATGGCGTTGCTCAAACGGCCTAGAGAAAGTGAAGCTGGAGgtactgtgcacatggggcgatgactgggggggttggaagaatatcaatcc #### Ccdc88b_ID1824_25 --> 2 - 1 Original Alignment ggTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGG-GCACCCAGTACCCACAGCAAAg ccttcctgtacttggatgacccttctccttcctgtcgcttttacatttagggTCGTCGTCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCCGGTGGGCAGCGGCGGAGTCTCAGTTCCCAGTTCCCCGGGGGACGAAGCTCTGCGTCGTTTAGTCCAGGGGACACCCCACGGCAACGGTTCAGACAGCAAAGGCCCGGCCCCCTGGGGCGCACCGAGTACCCACAGCAAAggtgagttatagagtccttgaattgaagttcccattattgtgtgggctcag Alignment from CESAR ggTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGG-GCACCCAGTACCCACAGCAAAg ccttcctgtacttggatgacccttctccttcctgtcgcttttacatttagggTCGTCGTCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCCGGTGGGCAGCGGCGGAGTCTCAGTTCCCAGTTCCCCGGGGGACGAAGCTCTGCGTCGTTTAGTCCAGGGGACACCCCACGGCAACGGTTCAGACAGCAAAGGCCCGGCCCCCTGGGGCGCACCGAGTACCCACAGCAAAggtgagttatagagtccttgaattgaagttcccattattgtgtgggctcag Alignment from Spaln_aa2Genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGG-GCACCCAGTACCCACAGCAAAG ccttcctgtacttggatgacccttctccttcctgtcgcttttacatttagGGTCGTCGTCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCCGGTGGGCAGCGGCGGAGTCTCAGTTCCCAGTTCCCCGGGGGACGAAGCTCTGCGTCGTTTAGTCCAGGGGACACCCCACGGCAACGGTTCAGACAGCAAAGGCCCGGCCCCCTGGGGcGCACCGAGTACCCACAGCAAAGgtgagttatagagtccttgaattgaagttcccattattgtgtgggctcag Alignment from Spaln_nt2Genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGG-GCACCCAGTACCCACAGCAAAG ccttcctgtacttggatgacccttctccttcctgtcgcttttacatttagGGTCGTCGTCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCCGGTGGGCAGCGGCGGAGTCTCAGTTCCCAGTTCCCCGGGGGACGAAGCTCTGCGTCGTTTAGTCCAGGGGACACCCCACGGCAACGGTTCAGACAGCAAAGGCCCGGCCCCCTGGGGCGCACCGAGTACCCACAGCAAAGgtgagttatagagtccttgaattgaagttcccattattgtgtgggctcag Alignment from Pairagon GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGG-GCACCCAGTACCCACAGCAAAG ccttcctgtacttggatgacccttctccttcctgtcgcttttacatttagGGTCGTCGTCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCCGGTGGGCAGCGGCGGAGTCTCAGTTCCCAGTTCCCCGGGGGACGAAGCTCTGCGTCGTTTAGTCCAGGGGACACCCCACGGCAACGGTTCAGACAGCAAAGGCCCGGCCCCCTGGGGCGCACCGAGTACCCACAGCAAAGgtgagttatagagtccttgaattgaagttcccattattgtgtgggctcag Alignment from Exonerate_protein2genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTG-GGGGCACCCAGTACCCACAGCAAAG ccttcctgtacttggatgacccttctccttcctgtcgcttttacatttagGGTCGTCGTCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCCGGTGGGCAGCGGCGGAGTCTCAGTTCCCAGTTCCCCGGGGGACGAAGCTCTGCGTCGTTTAGTCCAGGGGACACCCCACGGCAACGGTTCAGACAGCAAAGGCCCGGCCCCCTGGGGCGCACCGAGTACCCACAGCAAAGgtgagttatagagtccttgaattgaagttcccattattgtgtgggctcag Alignment from Exonerate_coding2genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTG-GGGGCACCCAGTACCCACAGCAAAG ccttcctgtacttggatgacccttctccttcctgtcgcttttacatttagGGTCGTCGTCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCCGGTGGGCAGCGGCGGAGTCTCAGTTCCCAGTTCCCCGGGGGACGAAGCTCTGCGTCGTTTAGTCCAGGGGACACCCCACGGCAACGGTTCAGACAGCAAAGGCCCGGCCCCCTGGGGCGCACCGAGTACCCACAGCAAAGgtgagttatagagtccttgaattgaagttcccattattgtgtgggctcag Alignment from GeneWise GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGG-GCACCCAGTACCCACAGCAAAG ccttcctgtacttggatgacccttctccttcctgtcgcttttacatttagGGTCGTCGTCACCAGCACCCATGCACCGCATCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCCGGTGGGCAGCGGCGGAGTCTCAGTTCCCAGTTCCCCGGGGGACGAAGCTCTGCGTCGTTTAGTCCAGGGGACACCCCACGGCAACGGTTCAGACAGCAAAGGCCCGGCCCCCTGGGGCGCACCGAGTACCCACAGCAAAGgtgagttatagagtccttgaattgaagttcccattattgtgtgggctcag #### Ccdc88b_ID1831_18 --> 0 - 0 Original Alignment AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAG-AGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG gggatggcagggctaacaacttaaacattgtgtttgttttgctggttaagAATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGCCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTGCTTCTACAGCAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAGgtaagtaggagccacctggactccagcctgttagtgtcattttatgccgt Alignment from CESAR AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAG-AGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG gggatggcagggctaacaacttaaacattgtgtttgttttgctggttaagAATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGCCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTGCTTCTACAGCAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAGgtaagtaggagccacctggactccagcctgttagtgtcattttatgccgt Alignment from Spaln_aa2Genome AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAG-AGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG gggatggcagggctaacaacttaaacattgtgtttgttttgctggttaagAATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGCCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTGCTTCTACAGcAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAGgtaagtaggagccacctggactccagcctgttagtgtcattttatgccgt Alignment from Spaln_nt2Genome AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAG-AGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG gggatggcagggctaacaacttaaacattgtgtttgttttgctggttaagAATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGCCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTGCTTCTACAGCAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAGgtaagtaggagccacctggactccagcctgttagtgtcattttatgccgt Alignment from Pairagon AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAG-AGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG gggatggcagggctaacaacttaaacattgtgtttgttttgctggttaagAATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGCCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTGCTTCTACAGCAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAGgtaagtaggagccacctggactccagcctgttagtgtcattttatgccgt Alignment from Exonerate_protein2genome AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAG-AGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG gggatggcagggctaacaacttaaacattgtgtttgttttgctggttaagAATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGCCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTGCTTCTACAGCAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAGgtaagtaggagccacctggactccagcctgttagtgtcattttatgccgt Alignment from Exonerate_coding2genome AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTAC-AGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG gggatggcagggctaacaacttaaacattgtgtttgttttgctggttaagAATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGCCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTGCTTCTACAGCAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAGgtaagtaggagccacctggactccagcctgttagtgtcattttatgccgt Alignment from GeneWise AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAG-AGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG gggatggcagggctaacaacttaaacattgtgtttgttttgctggttaagAATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGCCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTGCTTCTACAGCAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAGgtaagtaggagccacctggactccagcctgttagtgtcattttatgccgt #### Ccdc88b_ID1837_12 --> 0 - 1 Original Alignment GACCTGGACTCTCTGCGGCATCAGCTGGAG-CAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGg ggatatgcaagcttgatgaacaagatgcgtctgtctctgtcctgtcgcagGACCTGGACTCTCTGCGGCATCAGCTGGAGCCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGggtgagttaggcctagggtaagggcaaggatctgggggtgaaggcaggctc Alignment from CESAR GACCTGGACTCTCTGCGGCATCAGCTGGAG-CAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGg ggatatgcaagcttgatgaacaagatgcgtctgtctctgtcctgtcgcagGACCTGGACTCTCTGCGGCATCAGCTGGAGCCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGggtgagttaggcctagggtaagggcaaggatctgggggtgaaggcaggctc Alignment from Spaln_aa2Genome GACCTGGACTCTCTGCGGCATCAGCTGGAG-CAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggatatgcaagcttgatgaacaagatgcgtctgtctctgtcctgtcgcagGACCTGGACTCTCTGCGGCATCAGCTGGAGcCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGGgtgagttaggcctagggtaagggcaaggatctgggggtgaaggcaggctc Alignment from Spaln_nt2Genome GACCTGGACTCTCTGCGGCATCAGCTGGAG-CAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggatatgcaagcttgatgaacaagatgcgtctgtctctgtcctgtcgcagGACCTGGACTCTCTGCGGCATCAGCTGGAGCCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGGgtgagttaggcctagggtaagggcaaggatctgggggtgaaggcaggctc Alignment from Pairagon GACCTGGACTCTCTGCGGCATCAGCTGGAG-CAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggatatgcaagcttgatgaacaagatgcgtctgtctctgtcctgtcgcagGACCTGGACTCTCTGCGGCATCAGCTGGAGCCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGGgtgagttaggcctagggtaagggcaaggatctgggggtgaaggcaggctc Alignment from Exonerate_protein2genome GACCTGGACTCTCTGCGGCATCAGCTGGAG-CAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggatatgcaagcttgatgaacaagatgcgtctgtctctgtcctgtcgcagGACCTGGACTCTCTGCGGCATCAGCTGGAGCCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGGgtgagttaggcctagggtaagggcaaggatctgggggtgaaggcaggctc Alignment from Exonerate_coding2genome GACCTGGACTCTCTGCGGCATCAGCTGGAGC-AGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggatatgcaagcttgatgaacaagatgcgtctgtctctgtcctgtcgcagGACCTGGACTCTCTGCGGCATCAGCTGGAGCCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGGgtgagttaggcctagggtaagggcaaggatctgggggtgaaggcaggctc Alignment from GeneWise GACCTGGACTCTCTGCGGCATCAGCTG-GAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggatatgcaagcttgatgaacaagatgcgtctgtctctgtcctgtcgcagGACCTGGACTCTCTGCGGCATCAGCTGGAGCCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGAAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGGgtgagttaggcctagggtaagggcaaggatctgggggtgaaggcaggctc #### Ccdc88b_ID1838_11 --> 0 - 0 Original Alignment GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTC-CTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG tgagcataaagatttgatctcaccaaggtactctttgggcttcttggcagGAGGAGCGGGTCCTGTCTGAGGCCCTGGAGGCTTCAAAGGTCCTACTGGAAGAGCAGCTGGAGGTTGCCCGAAAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCCTGCTGCGCACGCGATTGGGTGAGGCCCATGTGgtgagttaggctaacctctccatctttgtccctggttcttcatgatgcta Alignment from CESAR GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTC-CTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG tgagcataaagatttgatctcaccaaggtactctttgggcttcttggcagGAGGAGCGGGTCCTGTCTGAGGCCCTGGAGGCTTCAAAGGTCCTACTGGAAGAGCAGCTGGAGGTTGCCCGAAAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCCTGCTGCGCACGCGATTGGGTGAGGCCCATGTGgtgagttaggctaacctctccatctttgtccctggttcttcatgatgcta Alignment from Spaln_aa2Genome GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTC-CTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG tgagcataaagatttgatctcaccaaggtactctttgggcttcttggcagGAGGAGCGGGTCCTGTCTGAGGCCCTGGAGGCTTCAAAGGTCCTACTGGAAGAGCAGCTGGAGGTTGCCCGAAAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCcCTGCTGCGCACGCGATTGGGTGAGGCCCATGTGgtgagttaggctaacctctccatctttgtccctggttcttcatgatgcta Alignment from Spaln_nt2Genome GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTC-CTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG tgagcataaagatttgatctcaccaaggtactctttgggcttcttggcagGAGGAGCGGGTCCTGTCTGAGGCCCTGGAGGCTTCAAAGGTCCTACTGGAAGAGCAGCTGGAGGTTGCCCGAAAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCCTGCTGCGCACGCGATTGGGTGAGGCCCATGTGgtgagttaggctaacctctccatctttgtccctggttcttcatgatgcta Alignment from Pairagon GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCT-CCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG tgagcataaagatttgatctcaccaaggtactctttgggcttcttggcagGAGGAGCGGGTCCTGTCTGAGGCCCTGGAGGCTTCAAAGGTCCTACTGGAAGAGCAGCTGGAGGTTGCCCGAAAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCCTGCTGCGCACGCGATTGGGTGAGGCCCATGTGgtgagttaggctaacctctccatctttgtccctggttcttcatgatgcta Alignment from Exonerate_protein2genome GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTC-CTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG tgagcataaagatttgatctcaccaaggtactctttgggcttcttggcagGAGGAGCGGGTCCTGTCTGAGGCCCTGGAGGCTTCAAAGGTCCTACTGGAAGAGCAGCTGGAGGTTGCCCGAAAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCCTGCTGCGCACGCGATTGGGTGAGGCCCATGTGgtgagttaggctaacctctccatctttgtccctggttcttcatgatgcta Alignment from Exonerate_coding2genome GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCC-TGCTGCGCACGCGGTTGGGCGAGGCCCATGCG tgagcataaagatttgatctcaccaaggtactctttgggcttcttggcagGAGGAGCGGGTCCTGTCTGAGGCCCTGGAGGCTTCAAAGGTCCTACTGGAAGAGCAGCTGGAGGTTGCCCGAAAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCCTGCTGCGCACGCGATTGGGTGAGGCCCATGTGgtgagttaggctaacctctccatctttgtccctggttcttcatgatgcta Alignment from GeneWise GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTC-CTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG tgagcataaagatttgatctcaccaaggtactctttgggcttcttggcagGAGGAGCGGGTCCTGTCTGAGGCCCTGGAGGCTTCAAAGGTCCTACTGGAAGAGCAGCTGGAGGTTGCCCGAAAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAACCTCCCTGCTGCGCACGCGATTGGGTGAGGCCCATGTGgtgagttaggctaacctctccatctttgtccctggttcttcatgatgcta #### Ccdc88b_ID1842_7 --> 0 - 0 Original Alignment GTGACCCAACCTGGTGCTGGTGTGGTACTGGCTCTGGCTGGACCAGAATCCGGAGAGCTGGTGGCTGAGGAGCTGGAGATGCAGTTACGGAGCCTGACAGGGATGATGTCCAGGCTG-GCGCGGGAGCGCGATCTGGGGGCACAG atccctgaagcaaccttcacctccggatcttcctcctttgtctcctgcagGTGACCCAACCTGGTGCTGGTGTGGTACTGGCTCTAGCCGGACCAGAGTCTGGAGAGCTGGTTGCTGAGGAGCTGGAGATGCAGTTACGGAGCCTGACGGGGATGATGTCCAGGCTGCGCACGGGAGCGCGATCTGGGGGCACAGgtaagagacgggcaagggatgggtctgtcatgacccagaacaattttgtg Alignment from CESAR GTGACCCAACCTGGTGCTGGTGTGGTACTGGCTCTGGCTGGACCAGAATCCGGAGAGCTGGTGGCTGAGGAGCTGGAGATGCAGTTACGGAGCCTGACAGGGATGATGTCCAGGCTG-GCGCGGGAGCGCGATCTGGGGGCACAG atccctgaagcaaccttcacctccggatcttcctcctttgtctcctgcagGTGACCCAACCTGGTGCTGGTGTGGTACTGGCTCTAGCCGGACCAGAGTCTGGAGAGCTGGTTGCTGAGGAGCTGGAGATGCAGTTACGGAGCCTGACGGGGATGATGTCCAGGCTGCGCACGGGAGCGCGATCTGGGGGCACAGgtaagagacgggcaagggatgggtctgtcatgacccagaacaattttgtg Alignment from Spaln_aa2Genome GTGACCCAACCTGGTGCTGGTGTGGTACTGGCTCTGGCTGGACCAGAATCCGGAGAGCTGGTGGCTGAGGAGCTGGAGATGCAGTTACGGAGCCTGACAGGGATGATGTCCAGGCTG-GCGCGGGAGCGCGATCTGGGGGCACAG atccctgaagcaaccttcacctccggatcttcctcctttgtctcctgcagGTGACCCAACCTGGTGCTGGTGTGGTACTGGCTCTAGCCGGACCAGAGTCTGGAGAGCTGGTTGCTGAGGAGCTGGAGATGCAGTTACGGAGCCTGACGGGGATGATGTCCAGGCTGcGCACGGGAGCGCGATCTGGGGGCACAGgtaagagacgggcaagggatgggtctgtcatgacccagaacaattttgtg Alignment from Spaln_nt2Genome GTGACCCAACCTGGTGCTGGTGTGGTACTGGCTCTGGCTGGACCAGAATCCGGAGAGCTGGTGGCTGAGGAGCTGGAGATGCAGTTACGGAGCCTGACAGGGATGATGTCCAGGCTG-GCGCGGGAGCGCGATCTGGGGGCACAG atccctgaagcaaccttcacctccggatcttcctcctttgtctcctgcagGTGACCCAACCTGGTGCTGGTGTGGTACTGGCTCTAGCCGGACCAGAGTCTGGAGAGCTGGTTGCTGAGGAGCTGGAGATGCAGTTACGGAGCCTGACGGGGATGATGTCCAGGCTGCGCACGGGAGCGCGATCTGGGGGCACAGgtaagagacgggcaagggatgggtctgtcatgacccagaacaattttgtg Alignment from Pairagon GTGACCCAACCTGGTGCTGGTGTGGTACTGGCTCTGGCTGGACCAGAATCCGGAGAGCTGGTGGCTGAGGAGCTGGAGATGCAGTTACGGAGCCTGACAGGGATGATGTCCAGGCTG-GCGCGGGAGCGCGATCTGGGGGCACAG atccctgaagcaaccttcacctccggatcttcctcctttgtctcctgcagGTGACCCAACCTGGTGCTGGTGTGGTACTGGCTCTAGCCGGACCAGAGTCTGGAGAGCTGGTTGCTGAGGAGCTGGAGATGCAGTTACGGAGCCTGACGGGGATGATGTCCAGGCTGCGCACGGGAGCGCGATCTGGGGGCACAGgtaagagacgggcaagggatgggtctgtcatgacccagaacaattttgtg Alignment from Exonerate_protein2genome GTGACCCAACCTGGTGCTGGTGTGGTACTGGCTCTGGCTGGACCAGAATCCGGAGAGCTGGTGGCTGAGGAGCTGGAGATGCAGTTACGGAGCCTGACAGGGATGATGTCCAGGCTG-GCGCGGGAGCGCGATCTGGGGGCACAG atccctgaagcaaccttcacctccggatcttcctcctttgtctcctgcagGTGACCCAACCTGGTGCTGGTGTGGTACTGGCTCTAGCCGGACCAGAGTCTGGAGAGCTGGTTGCTGAGGAGCTGGAGATGCAGTTACGGAGCCTGACGGGGATGATGTCCAGGCTGCGCACGGGAGCGCGATCTGGGGGCACAGgtaagagacgggcaagggatgggtctgtcatgacccagaacaattttgtg Alignment from Exonerate_coding2genome GTGACCCAACCTGGTGCTGGTGTGGTACTGGCTCTGGCTGGACCAGAATCCGGAGAGCTGGTGGCTGAGGAGCTGGAGATGCAGTTACGGAGCCTGACAGGGATGATGTCCAGGCTGG-CGCGGGAGCGCGATCTGGGGGCACAG atccctgaagcaaccttcacctccggatcttcctcctttgtctcctgcagGTGACCCAACCTGGTGCTGGTGTGGTACTGGCTCTAGCCGGACCAGAGTCTGGAGAGCTGGTTGCTGAGGAGCTGGAGATGCAGTTACGGAGCCTGACGGGGATGATGTCCAGGCTGCGCACGGGAGCGCGATCTGGGGGCACAGgtaagagacgggcaagggatgggtctgtcatgacccagaacaattttgtg Alignment from GeneWise GTGACCCAACCTGGTGCTGGTGTGGTACTGGCTCTGGCTGGACCAGAATCCGGAGAGCTGGTGGCTGAGGAGCTGGAGATGCAGTTACGGAGCCTGACAGGGATGATGTCCAGGCTG-GCGCGGGAGCGCGATCTGGGGGCACAG atccctgaagcaaccttcacctccggatcttcctcctttgtctcctgcagGTGACCCAACCTGGTGCTGGTGTGGTACTGGCTCTAGCCGGACCAGAGTCTGGAGAGCTGGTTGCTGAGGAGCTGGAGATGCAGTTACGGAGCCTGACGGGGATGATGTCCAGGCTGCGCACGGGAGCGCGATCTGGGGGCACAGgtaagagacgggcaagggatgggtctgtcatgacccagaacaattttgtg #### Ccdc88b_ID1844_5 --> 2 - 0 Original Alignment aaGAGGCAGTGGAC------------------------------------------------------GAGCTGGAAAGCATCCTTCGGCTGTTG-CTGGGGGCCTCAGTGCAG tgtcactgccctatatccctatttaatcgaaaagttgtgtgatcctgtagagGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGTTGTTGCTGGGGGCCTCAGTGCAGGTGAAGAGGGAGCTGGAAAGCATCCTTCGGTTGTTGCCTGGGGGCCTCAGTGCAGgtgtgaaggggatgggagaagggaatggagttctgacaggaggtggggcc Alignment from CESAR aaGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG tgtcactgccctatatccctatttaatcgaaaagttgtgtgatcctgtagagGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGTTGTTGCTGGGGGCCTCAGTGCAGgtgaagagggagctggaaagcatccttcggttgttgcctgggggcctcagtgcaggtgtgaaggggatgggagaagggaatggagttctgacaggaggtggggcc Alignment from Spaln_aa2Genome AAGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG tgtcactgccctatatccctatttaatcgaaaagttgtgtgatcctgtagAGGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGTTGTTGCTGGGGGCCTCAGTGCAGgtgaagagggagctggaaagcatccttcggttgttgcctgggggcctcagtgcaggtgtgaaggggatgggagaagggaatggagttctgacaggaggtggggcc Alignment from Spaln_nt2Genome AAGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG tgtcactgccctatatccctatttaatcgaaaagttgtgtgatcctgtagAGGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGTTGTTGCTGGGGGCCTCAGTGCAGgtgaagagggagctggaaagcatccttcggttgttgcctgggggcctcagtgcaggtgtgaaggggatgggagaagggaatggagttctgacaggaggtggggcc Alignment from Pairagon AAGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG tgtcactgccctatatccctatttaatcgaaaagttgtgtgatcctgtagAGGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGTTGTTGCTGGGGGCCTCAGTGCAGgtgaagagggagctggaaagcatccttcggttgttgcctgggggcctcagtgcaggtgtgaaggggatgggagaagggaatggagttctgacaggaggtggggcc Alignment from Exonerate_protein2genome AAGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG tgtcactgccctatatccctatttaatcgaaaagttgtgtgatcctgtagAGGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGTTGTTGCTGGGGGCCTCAGTGCAGgtgaagagggagctggaaagcatccttcggttgttgcctgggggcctcagtgcaggtgtgaaggggatgggagaagggaatggagttctgacaggaggtggggcc Alignment from Exonerate_coding2genome AAGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG tgtcactgccctatatccctatttaatcgaaaagttgtgtgatcctgtagAGGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGTTGTTGCTGGGGGCCTCAGTGCAGgtgaagagggagctggaaagcatccttcggttgttgcctgggggcctcagtgcaggtgtgaaggggatgggagaagggaatggagttctgacaggaggtggggcc Alignment from GeneWise AAGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG tgtcactgccctatatccctatttaatcgaaaagttgtgtgatcctgtagAGGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGTTGTTGCTGGGGGCCTCAGTGCAGgtgaagagggagctggaaagcatccttcggttgttgcctgggggcctcagtgcaggtgtgaaggggatgggagaagggaatggagttctgacaggaggtggggcc #### Ccdc88b_ID1846_3 --> 1 - 0 Original Alignment tGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGG-AACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG aaggcctgtctggatccaacctctcacctccatcttgtttctctctgtagtGCTCCCAGTTCCCAAGGGGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCAAATGTGGCAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAGgtaatttatcgggaaggccaggcaggaggcccagcagctcctgtgaggat Alignment from CESAR tGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGG-AACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG aaggcctgtctggatccaacctctcacctccatcttgtttctctctgtagtGCTCCCAGTTCCCAAGGGGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCAAATGTGGCAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAGgtaatttatcgggaaggccaggcaggaggcccagcagctcctgtgaggat Alignment from Spaln_aa2Genome TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGG-AACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG aaggcctgtctggatccaacctctcacctccatcttgtttctctctgtagTGCTCCCAGTTCCCAAGGGGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCAAATGTGGcAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAGgtaatttatcgggaaggccaggcaggaggcccagcagctcctgtgaggat Alignment from Spaln_nt2Genome TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGG-AACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG aaggcctgtctggatccaacctctcacctccatcttgtttctctctgtagTGCTCCCAGTTCCCAAGGGGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCAAATGTGGCAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAGgtaatttatcgggaaggccaggcaggaggcccagcagctcctgtgaggat Alignment from Pairagon TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGG-AACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG aaggcctgtctggatccaacctctcacctccatcttgtttctctctgtagTGCTCCCAGTTCCCAAGGGGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCAAATGTGGCAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAGgtaatttatcgggaaggccaggcaggaggcccagcagctcctgtgaggat Alignment from Exonerate_protein2genome TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGG-AACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG aaggcctgtctggatccaacctctcacctccatcttgtttctctctgtagTGCTCCCAGTTCCCAAGGGGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCAAATGTGGCAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAGgtaatttatcgggaaggccaggcaggaggcccagcagctcctgtgaggat Alignment from Exonerate_coding2genome TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGA-ACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG aaggcctgtctggatccaacctctcacctccatcttgtttctctctgtagTGCTCCCAGTTCCCAAGGGGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCAAATGTGGCAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAGgtaatttatcgggaaggccaggcaggaggcccagcagctcctgtgaggat Alignment from GeneWise TGCTCCCAGTTCCCGAGGAGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGG-AACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG aaggcctgtctggatccaacctctcacctccatcttgtttctctctgtagTGCTCCCAGTTCCCAAGGGGGACTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCAAATGTGGCAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAGgtaatttatcgggaaggccaggcaggaggcccagcagctcctgtgaggat #### Ccdc88b_ID1847_2 --> 0 - 2 Original Alignment GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAA-GAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCat ggtgctggggagtttctacctgtttagcgtgaacctgcccaccattacagGCTCTGGGATTGGCTGGGCTCGTGGGGGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAACGAGGGGGCTCTTTGTACAGAGAAAAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCatgtaaaagacatggggaagttgagttggggggggggctatgaatagtagga Alignment from CESAR GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAA-GAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCat ggtgctggggagtttctacctgtttagcgtgaacctgcccaccattacagGCTCTGGGATTGGCTGGGCTCGTGGGGGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAACGAGGGGGCTCTTTGTACAGAGAAAAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCatgtaaaagacatggggaagttgagttggggggggggctatgaatagtagga Alignment from Spaln_aa2Genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAA-GAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT ggtgctggggagtttctacctgtttagcgtgaacctgcccaccattacagGCTCTGGGATTGGCTGGGCTCGTGGGGGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAcGAGGGGGCTCTTTGTACAGAGAAAAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCATgtaaaagacatggggaagttgagttggggggggggctatgaatagtagga Alignment from Spaln_nt2Genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAA-GAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT ggtgctggggagtttctacctgtttagcgtgaacctgcccaccattacagGCTCTGGGATTGGCTGGGCTCGTGGGGGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAACGAGGGGGCTCTTTGTACAGAGAAAAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCATgtaaaagacatggggaagttgagttggggggggggctatgaatagtagga Alignment from Pairagon GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAA-GAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT ggtgctggggagtttctacctgtttagcgtgaacctgcccaccattacagGCTCTGGGATTGGCTGGGCTCGTGGGGGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAACGAGGGGGCTCTTTGTACAGAGAAAAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCATgtaaaagacatggggaagttgagttggggggggggctatgaatagtagga Alignment from Exonerate_protein2genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAA-GAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT ggtgctggggagtttctacctgtttagcgtgaacctgcccaccattacagGCTCTGGGATTGGCTGGGCTCGTGGGGGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAACGAGGGGGCTCTTTGTACAGAGAAAAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCATgtaaaagacatggggaagttgagttggggggggggctatgaatagtagga Alignment from Exonerate_coding2genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAG-AGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT ggtgctggggagtttctacctgtttagcgtgaacctgcccaccattacagGCTCTGGGATTGGCTGGGCTCGTGGGGGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAACGAGGGGGCTCTTTGTACAGAGAAAAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCATgtaaaagacatggggaagttgagttggggggggggctatgaatagtagga Alignment from GeneWise GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAA-GAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT ggtgctggggagtttctacctgtttagcgtgaacctgcccaccattacagGCTCTGGGATTGGCTGGGCTCGTGGGGGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAACGAGGGGGCTCTTTGTACAGAGAAAAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCATgtaaaagacatggggaagttgagttggggggggggctatgaatagtagga #### Ccs_ID661_7 --> 0 - 2 Original Alignment GTGTGGGATGTGATTGGCCGC-AGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGag agagagcagtcacaggacgatggtgctgacatgtgtggactgattttcagGTGTGGGATGTGATTGGCCGCCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGaggtaagatatgcctccaccaacagaggcagtgatatgccagtggtccccac Alignment from CESAR GTGTGGGATGTGATTGGCCGC-AGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGag agagagcagtcacaggacgatggtgctgacatgtgtggactgattttcagGTGTGGGATGTGATTGGCCGCCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGaggtaagatatgcctccaccaacagaggcagtgatatgccagtggtccccac Alignment from Spaln_aa2Genome GTGTGGGATGTGATTGGCCGC-AGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGAG agagagcagtcacaggacgatggtgctgacatgtgtggactgattttcagGTGTGGGATGTGATTGGCCGCcAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGAGgtaagatatgcctccaccaacagaggcagtgatatgccagtggtccccac Alignment from Spaln_nt2Genome GTGTGGGATGTGATTGGCCG-CAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGAG agagagcagtcacaggacgatggtgctgacatgtgtggactgattttcagGTGTGGGATGTGATTGGCCGCCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGAGgtaagatatgcctccaccaacagaggcagtgatatgccagtggtccccac Alignment from Pairagon GTGTGGGATGTGATTGGCCG-CAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGAG agagagcagtcacaggacgatggtgctgacatgtgtggactgattttcagGTGTGGGATGTGATTGGCCGCCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGAGgtaagatatgcctccaccaacagaggcagtgatatgccagtggtccccac Alignment from Exonerate_protein2genome GTGTGGGATGTGATTGGCCGC-AGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGAG agagagcagtcacaggacgatggtgctgacatgtgtggactgattttcagGTGTGGGATGTGATTGGCCGCCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGAGgtaagatatgcctccaccaacagaggcagtgatatgccagtggtccccac Alignment from Exonerate_coding2genome GTGTGGGATGTGATTGGCCGC-AGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGAG agagagcagtcacaggacgatggtgctgacatgtgtggactgattttcagGTGTGGGATGTGATTGGCCGCCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGAGgtaagatatgcctccaccaacagaggcagtgatatgccagtggtccccac Alignment from GeneWise GTGTGGGATGTGATTGGCCGC-AGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGAG agagagcagtcacaggacgatggtgctgacatgtgtggactgattttcagGTGTGGGATGTGATTGGCCGCCAGCCTGGTTATCGATGAGGGGGAAGATGACCTGGGCCGGGGAGGCCATCCCTTATCCAAGATCACAGGGAATTCTGGGAAGAGgtaagatatgcctccaccaacagaggcagtgatatgccagtggtccccac #### Cd5_ID2994_4 --> 2 - 1 Original Alignment agCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACC-ACCGTGCCGGAGCCCACAg cataccctttgctccccacttcccacccgcccctgcatttcccgtttcagagCCCCAGAGAACAACACCTCCACCCACAACCACCCCACCCACCCACCGTGCCGGAGCCCACAggtgagcgggtgcacagtccttgtaggaaaggcagaggatgcactggtgta Alignment from CESAR agCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACC-ACCGTGCCGGAGCCCACAg cataccctttgctccccacttcccacccgcccctgcatttcccgtttcagagCCCCAGAGAACAACACCTCCACCCACAACCACCCCACCCACCCACCGTGCCGGAGCCCACAggtgagcgggtgcacagtccttgtaggaaaggcagaggatgcactggtgta Alignment from Spaln_aa2Genome AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACC-ACCGTGCCGGAGCCCACAG cataccctttgctccccacttcccacccgcccctgcatttcccgtttcagAGCCCCAGAGAACAACACCTCCACCCACAACCACCCCACCCACCcACCGTGCCGGAGCCCACAGgtgagcgggtgcacagtccttgtaggaaaggcagaggatgcactggtgta Alignment from Spaln_nt2Genome AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCAC-CACCGTGCCGGAGCCCACAG cataccctttgctccccacttcccacccgcccctgcatttcccgtttcagAGCCCCAGAGAACAACACCTCCACCCACAACCACCCCACCCACCCACCGTGCCGGAGCCCACAGgtgagcgggtgcacagtccttgtaggaaaggcagaggatgcactggtgta Alignment from Pairagon AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCA-CCACCGTGCCGGAGCCCACAG cataccctttgctccccacttcccacccgcccctgcatttcccgtttcagAGCCCCAGAGAACAACACCTCCACCCACAACCACCCCACCCACCCACCGTGCCGGAGCCCACAGgtgagcgggtgcacagtccttgtaggaaaggcagaggatgcactggtgta Alignment from Exonerate_protein2genome AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACC-ACCGTGCCGGAGCCCACAG cataccctttgctccccacttcccacccgcccctgcatttcccgtttcagAGCCCCAGAGAACAACACCTCCACCCACAACCACCCCACCCACCCACCGTGCCGGAGCCCACAGgtgagcgggtgcacagtccttgtaggaaaggcagaggatgcactggtgta Alignment from Exonerate_coding2genome AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACC-ACCGTGCCGGAGCCCACAG cataccctttgctccccacttcccacccgcccctgcatttcccgtttcagAGCCCCAGAGAACAACACCTCCACCCACAACCACCCCACCCACCCACCGTGCCGGAGCCCACAGgtgagcgggtgcacagtccttgtaggaaaggcagaggatgcactggtgta Alignment from GeneWise AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCC-ACCACCGTGCCGGAGCCCACAG cataccctttgctccccacttcccacccgcccctgcatttcccgtttcagAGCCCCAGAGAACAACACCTCCACCCACAACCACCCCACCCACCCACCGTGCCGGAGCCCACAGgtgagcgggtgcacagtccttgtaggaaaggcagaggatgcactggtgta #### Cdc42bpg_ID1573_3 --> 0 - 0 Original Alignment GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAG-ATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG gggcttttcatttggtctggtctagtctgtacatcccttgtcttttgcagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGCATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAGgtaatgtggtcaagtgtccactgcaaatgggtaggtgaagatatgcttgc Alignment from CESAR GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAG-ATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG gggcttttcatttggtctggtctagtctgtacatcccttgtcttttgcagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGCATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAGgtaatgtggtcaagtgtccactgcaaatgggtaggtgaagatatgcttgc Alignment from Spaln_aa2Genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAG-ATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG gggcttttcatttggtctggtctagtctgtacatcccttgtcttttgcagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGcATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAGgtaatgtggtcaagtgtccactgcaaatgggtaggtgaagatatgcttgc Alignment from Spaln_nt2Genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAG-ATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG gggcttttcatttggtctggtctagtctgtacatcccttgtcttttgcagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGCATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAGgtaatgtggtcaagtgtccactgcaaatgggtaggtgaagatatgcttgc Alignment from Pairagon GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAG-ATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG gggcttttcatttggtctggtctagtctgtacatcccttgtcttttgcagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGCATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAGgtaatgtggtcaagtgtccactgcaaatgggtaggtgaagatatgcttgc Alignment from Exonerate_protein2genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAG-ATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG gggcttttcatttggtctggtctagtctgtacatcccttgtcttttgcagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGCATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAGgtaatgtggtcaagtgtccactgcaaatgggtaggtgaagatatgcttgc Alignment from Exonerate_coding2genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAG-ATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG gggcttttcatttggtctggtctagtctgtacatcccttgtcttttgcagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGCATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAGgtaatgtggtcaagtgtccactgcaaatgggtaggtgaagatatgcttgc Alignment from GeneWise GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATG-AAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG gggcttttcatttggtctggtctagtctgtacatcccttgtcttttgcagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGCATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAGgtaatgtggtcaagtgtccactgcaaatgggtaggtgaagatatgcttgc #### Cdc42bpg_ID1581_11 --> 2 - 1 Original Alignment agCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTT-CAGGAGAAACTGGCAg gtacattgctaaaggcctggctactcactcctgtctaccttctctgctagagCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTTCAGGTTCTTCCAGGAGAAACTGGCAggtaagagtgacctgttcctagaatagctgagctccttcccaggtcctagt Alignment from CESAR agCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTT-CAGGAGAAACTGGCAg gtacattgctaaaggcctggctactcactcctgtctaccttctctgctagagCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTTCAGGTTCTTCCAGGAGAAACTGGCAggtaagagtgacctgttcctagaatagctgagctccttcccaggtcctagt Alignment from Spaln_aa2Genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtacattgctaaaggcctggctactcactcctgtctaccttctctgctagAGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTTCAGGTTCTTCCAGGAGAA---ACTGgcaggtaagagtgacctgttcctagaatagctgagctccttcccaggtcctagt Alignment from Spaln_nt2Genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTT-CAGGAGAAACTGGCAG gtacattgctaaaggcctggctactcactcctgtctaccttctctgctagAGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTTCAGGTTCTTCCAGGAGAAACTGGCAGgtaagagtgacctgttcctagaatagctgagctccttcccaggtcctagt Alignment from Pairagon AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTT-CAGGAGAAACTGGCAG gtacattgctaaaggcctggctactcactcctgtctaccttctctgctagAGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTTCAGGTTCTTCCAGGAGAAACTGGCAGgtaagagtgacctgttcctagaatagctgagctccttcccaggtcctagt Alignment from Exonerate_protein2genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTT-CAGGAGAAACTGGCAG gtacattgctaaaggcctggctactcactcctgtctaccttctctgctagAGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTTCAGGTTCTTCCAGGAGAAACTGGCAGgtaagagtgacctgttcctagaatagctgagctccttcccaggtcctagt Alignment from Exonerate_coding2genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTTCTT-CAGGAGAAACTGGCAG gtacattgctaaaggcctggctactcactcctgtctaccttctctgctagAGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTTCAGGTTCTTCCAGGAGAAACTGGCAGgtaagagtgacctgttcctagaatagctgagctccttcccaggtcctagt Alignment from GeneWise AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTACAGGTT-CTTCAGGAGAAACTGGCAG gtacattgctaaaggcctggctactcactcctgtctaccttctctgctagAGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTTCAGGTTCTTCCAGGAGAAACTGGCAGgtaagagtgacctgttcctagaatagctgagctccttcccaggtcctagt #### Cdc42bpg_ID1582_12 --> 2 - 0 Original Alignment agACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAG-GACCGCCTCCAGCAG gatgaggtggagttgtcctgagtgcaatacaccatctattgtccaagcagagACATTGAGGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAATTACAACAGGAGAAGCGACCGCCTCCAGCAGgtaggaatgatgatgagaattttgtcatgtgttttttggctgcataaatg Alignment from CESAR agACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAG-GACCGCCTCCAGCAG gatgaggtggagttgtcctgagtgcaatacaccatctattgtccaagcagagACATTGAGGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAATTACAACAGGAGAAGCGACCGCCTCCAGCAGgtaggaatgatgatgagaattttgtcatgtgttttttggctgcataaatg Alignment from Spaln_aa2Genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG gatgaggtggagttgtcctgagtgcaatacaccatctattgtccaagcagAGACATTGAGGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAATTACAACAGGAGAAG---CGACCGCCTCCAgcaggtaggaatgatgatgagaattttgtcatgtgttttttggctgcataaatg Alignment from Spaln_nt2Genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAG-GACCGCCTCCAGCAG gatgaggtggagttgtcctgagtgcaatacaccatctattgtccaagcagAGACATTGAGGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAATTACAACAGGAGAAGCGACCGCCTCCAGCAGgtaggaatgatgatgagaattttgtcatgtgttttttggctgcataaatg Alignment from Pairagon AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAG-GACCGCCTCCAGCAG gatgaggtggagttgtcctgagtgcaatacaccatctattgtccaagcagAGACATTGAGGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAATTACAACAGGAGAAGCGACCGCCTCCAGCAGgtaggaatgatgatgagaattttgtcatgtgttttttggctgcataaatg Alignment from Exonerate_protein2genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAG-GACCGCCTCCAGCAG gatgaggtggagttgtcctgagtgcaatacaccatctattgtccaagcagAGACATTGAGGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAATTACAACAGGAGAAGCGACCGCCTCCAGCAGgtaggaatgatgatgagaattttgtcatgtgttttttggctgcataaatg Alignment from Exonerate_coding2genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAG-GACCGCCTCCAGCAG gatgaggtggagttgtcctgagtgcaatacaccatctattgtccaagcagAGACATTGAGGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAATTACAACAGGAGAAGCGACCGCCTCCAGCAGgtaggaatgatgatgagaattttgtcatgtgttttttggctgcataaatg Alignment from GeneWise --GAGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAG-AAGGACCGCCTCCAGCAG gatgaggtggagttgtcctgagtgcaatacaccatctattgtccaagCAGAGACATTGAGGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAATTACAACAGGAGAAGCGACCGCCTCCAGCAGgtaggaatgatgatgagaattttgtcatgtgttttttggctgcataaatg #### Cdc42bpg_ID1585_15 --> 0 - 2 Original Alignment ACCGTCCATGCAGCCCCT-GAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAgg aggccatggcttctcaaaccccggccttcctctctgtttctttctgacagACTGTCCATGCAGCCCCTCGAGACAAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGTGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAgggtaaaggcatggtaggtgcagccaggaggggacagggcagggccagcctg Alignment from CESAR ACCGTCCATGCAGCCCCT-GAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAgg aggccatggcttctcaaaccccggccttcctctctgtttctttctgacagACTGTCCATGCAGCCCCTCGAGACAAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGTGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAgggtaaaggcatggtaggtgcagccaggaggggacagggcagggccagcctg Alignment from Spaln_aa2Genome ACCGTCCATGCAGCCCCT-GAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccatggcttctcaaaccccggccttcctctctgtttctttctgacagACTGTCCATGCAGCCCCTcGAGACAAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGTGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGGgtaaaggcatggtaggtgcagccaggaggggacagggcagggccagcctg Alignment from Spaln_nt2Genome ACCGTCCATGCAGCCCCT-GAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccatggcttctcaaaccccggccttcctctctgtttctttctgacagACTGTCCATGCAGCCCCTCGAGACAAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGTGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGGgtaaaggcatggtaggtgcagccaggaggggacagggcagggccagcctg Alignment from Pairagon ACCGTCCATGCAGCCCCT-GAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccatggcttctcaaaccccggccttcctctctgtttctttctgacagACTGTCCATGCAGCCCCTCGAGACAAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGTGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGGgtaaaggcatggtaggtgcagccaggaggggacagggcagggccagcctg Alignment from Exonerate_protein2genome ACCGTCCATGCAGCCCCT-GAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccatggcttctcaaaccccggccttcctctctgtttctttctgacagACTGTCCATGCAGCCCCTCGAGACAAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGTGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGGgtaaaggcatggtaggtgcagccaggaggggacagggcagggccagcctg Alignment from Exonerate_coding2genome ACCGTCCATGCAGCCCCT-GAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccatggcttctcaaaccccggccttcctctctgtttctttctgacagACTGTCCATGCAGCCCCTCGAGACAAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGTGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGGgtaaaggcatggtaggtgcagccaggaggggacagggcagggccagcctg Alignment from GeneWise ACCGTCCATGCAGCCCCT-GAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccatggcttctcaaaccccggccttcctctctgtttctttctgacagACTGTCCATGCAGCCCCTCGAGACAAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGTGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGGgtaaaggcatggtaggtgcagccaggaggggacagggcagggccagcctg #### Cdc42bpg_ID1586_16 --> 1 - 0 Original Alignment gATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTG-CAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG cagggccagcctgggagtcagctctatcgttcctttgtcttccttctcaggATCAGTGTTGGGAAAGAAGAGGTTCTATGCCGATTGCCAGGAGGTAAACCAGCGGCTGAGTCGGGAGCAGGAACGGgtatgaagggaagacagacaaggcacaggttgggtgccagcagggtaagg Alignment from CESAR gATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTG-CAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG cagggccagcctgggagtcagctctatcgttcctttgtcttccttctcaggATCAGTGTTGGGAAAGAAGAGGTTCTATGCCGATTGCCAGGAGGTAAACCAGCGGCTGAGTCGGGAGCAGGAACGGgtatgaagggaagacagacaaggcacaggttgggtgccagcagggtaagg Alignment from Spaln_aa2Genome GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTG-CAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG cagggccagcctgggagtcagctctatcgttcctttgtcttccttctcagGATCAGTGTTGGGAAAGAAGAGGTTCTATGCCGATTGcCAGGAGGTAAACCAGCGGCTGAGTCGGGAGCAGGAACGGgtatgaagggaagacagacaaggcacaggttgggtgccagcagggtaagg Alignment from Spaln_nt2Genome GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTG-CAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG cagggccagcctgggagtcagctctatcgttcctttgtcttccttctcagGATCAGTGTTGGGAAAGAAGAGGTTCTATGCCGATTGCCAGGAGGTAAACCAGCGGCTGAGTCGGGAGCAGGAACGGgtatgaagggaagacagacaaggcacaggttgggtgccagcagggtaagg Alignment from Pairagon GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTG-CAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG cagggccagcctgggagtcagctctatcgttcctttgtcttccttctcagGATCAGTGTTGGGAAAGAAGAGGTTCTATGCCGATTGCCAGGAGGTAAACCAGCGGCTGAGTCGGGAGCAGGAACGGgtatgaagggaagacagacaaggcacaggttgggtgccagcagggtaagg Alignment from Exonerate_protein2genome GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTG-CAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG cagggccagcctgggagtcagctctatcgttcctttgtcttccttctcagGATCAGTGTTGGGAAAGAAGAGGTTCTATGCCGATTGCCAGGAGGTAAACCAGCGGCTGAGTCGGGAGCAGGAACGGgtatgaagggaagacagacaaggcacaggttgggtgccagcagggtaagg Alignment from Exonerate_coding2genome GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTG-CAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG cagggccagcctgggagtcagctctatcgttcctttgtcttccttctcagGATCAGTGTTGGGAAAGAAGAGGTTCTATGCCGATTGCCAGGAGGTAAACCAGCGGCTGAGTCGGGAGCAGGAACGGgtatgaagggaagacagacaaggcacaggttgggtgccagcagggtaagg Alignment from GeneWise GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGA-TTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG cagggccagcctgggagtcagctctatcgttcctttgtcttccttctcagGATCAGTGTTGGGAAAGAAGAGGTTCTATGCCGATTGCCAGGAGGTAAACCAGCGGCTGAGTCGGGAGCAGGAACGGgtatgaagggaagacagacaaggcacaggttgggtgccagcagggtaagg #### Cdc42bpg_ID1587_17 --> 0 - 2 Original Alignment CTGGCAGGAGAGCTG-GAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCtg gggctacaagggccactgaggactaatcacatcttttatctttttgtcagCTGGCAGGAGAGCTGCGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCtggtcagtacacggagcctggtggcacctctaatggctgaggacccaggtca Alignment from CESAR CTGGCAGGAGAGCTG-GAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCtg gggctacaagggccactgaggactaatcacatcttttatctttttgtcagCTGGCAGGAGAGCTGCGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCtggtcagtacacggagcctggtggcacctctaatggctgaggacccaggtca Alignment from Spaln_aa2Genome CTGGCAGGAGAGCTG-GAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gggctacaagggccactgaggactaatcacatcttttatctttttgtcagCTGGCAGGAGAGCTGcGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTGgtcagtacacggagcctggtggcacctctaatggctgaggacccaggtca Alignment from Spaln_nt2Genome CTGGCAGGAGAGCTG-GAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gggctacaagggccactgaggactaatcacatcttttatctttttgtcagCTGGCAGGAGAGCTGCGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTGgtcagtacacggagcctggtggcacctctaatggctgaggacccaggtca Alignment from Pairagon CTGGCAGGAGAGCTG-GAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gggctacaagggccactgaggactaatcacatcttttatctttttgtcagCTGGCAGGAGAGCTGCGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTGgtcagtacacggagcctggtggcacctctaatggctgaggacccaggtca Alignment from Exonerate_protein2genome CTGGCAGGAGAGCTG-GAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gggctacaagggccactgaggactaatcacatcttttatctttttgtcagCTGGCAGGAGAGCTGCGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTGgtcagtacacggagcctggtggcacctctaatggctgaggacccaggtca Alignment from Exonerate_coding2genome CTGGCAGGAGAGCTG-GAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gggctacaagggccactgaggactaatcacatcttttatctttttgtcagCTGGCAGGAGAGCTGCGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTGgtcagtacacggagcctggtggcacctctaatggctgaggacccaggtca Alignment from GeneWise CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gggctacaagggccactgaggactaatcacatcttttatctttttgtcagctggcagGAGAGC------TGCGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTGgtcagtacacggagcctggtggcacctctaatggctgaggacccaggtca #### Cdc42bpg_ID1591_21 --> 2 - 0 Original Alignment atGCCAGGCCTTCCACTTCCCTCATCCCT-CTCCTGTCCTTCTGGAACACAGAG cccgcagtcccagggcaacagcctcagttttatacctcctctcattatagatGCCAGGCCTTCCACTTCCCTCATCCCTCCTCCTGTCCTTCTGGAACACAGAGgtaggatccacgcagagggactagctagggaggagagctggtgagaaata Alignment from CESAR atGCCAGGCCTTCCACTTCCCTCATCCCT-CTCCTGTCCTTCTGGAACACAGAG cccgcagtcccagggcaacagcctcagttttatacctcctctcattatagatGCCAGGCCTTCCACTTCCCTCATCCCTCCTCCTGTCCTTCTGGAACACAGAGgtaggatccacgcagagggactagctagggaggagagctggtgagaaata Alignment from Spaln_aa2Genome ATGCCAGGCCTTCCACTTCCCTCATCCCT-CTCCTGTCCTTCTGGAACACAGAG cccgcagtcccagggcaacagcctcagttttatacctcctctcattatagATGCCAGGCCTTCCACTTCCCTCATCCCTcCTCCTGTCCTTCTGGAACACAGAGgtaggatccacgcagagggactagctagggaggagagctggtgagaaata Alignment from Spaln_nt2Genome ATGCCAGGCCTTCCACTTCCCTCATCCCT-CTCCTGTCCTTCTGGAACACAGAG cccgcagtcccagggcaacagcctcagttttatacctcctctcattatagATGCCAGGCCTTCCACTTCCCTCATCCCTCCTCCTGTCCTTCTGGAACACAGAGgtaggatccacgcagagggactagctagggaggagagctggtgagaaata Alignment from Pairagon ATGCCAGGCCTTCCACTTCCCTCATCCCT-CTCCTGTCCTTCTGGAACACAGAG cccgcagtcccagggcaacagcctcagttttatacctcctctcattatagATGCCAGGCCTTCCACTTCCCTCATCCCTCCTCCTGTCCTTCTGGAACACAGAGgtaggatccacgcagagggactagctagggaggagagctggtgagaaata Alignment from Exonerate_protein2genome ATGCCAGGCCTTCCACTTCCCTCATCCCT-CTCCTGTCCTTCTGGAACACAGAG cccgcagtcccagggcaacagcctcagttttatacctcctctcattatagATGCCAGGCCTTCCACTTCCCTCATCCCTCCTCCTGTCCTTCTGGAACACAGAGgtaggatccacgcagagggactagctagggaggagagctggtgagaaata Alignment from Exonerate_coding2genome ATGCCAGGCCTTCCACTTCCCTCATCCCT-CTCCTGTCCTTCTGGAACACAGAG cccgcagtcccagggcaacagcctcagttttatacctcctctcattatagATGCCAGGCCTTCCACTTCCCTCATCCCTCCTCCTGTCCTTCTGGAACACAGAGgtaggatccacgcagagggactagctagggaggagagctggtgagaaata Alignment from GeneWise ATGCCAGGCCTTCCACTTCCCTCATCCCT-CTCCTGTCCTTCTGGAACACAGAG cccgcagtcccagggcaacagcctcagttttatacctcctctcattatagATGCCAGGCCTTCCACTTCCCTCATCCCTCCTCCTGTCCTTCTGGAACACAGAGgtaggatccacgcagagggactagctagggaggagagctggtgagaaata #### Cdc42bpg_ID1596_26 --> 0 - 2 Original Alignment GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCT-CTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAag gctgtgggagtgagggccagtgcagcccatcagtgttttcttccctccagGTGCCACAGCCCTCATGTGTCCGTCGGGACTGGCAGCGGGTGTACGCTGCCCCTCAGTGATTCCCGTCTGTTGTTGTTTGATGCTCCTGATCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTGGATCTAaggtgagtgacagtgacacaggacaaatcatgggtagggtagtgagaagttc Alignment from CESAR GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCT-CTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAag gctgtgggagtgagggccagtgcagcccatcagtgttttcttccctccagGTGCCACAGCCCTCATGTGTCCGTCGGGACTGGCAGCGGGTGTACGCTGCCCCTCAGTGATTCCCGTCTGTTGTTGTTTGATGCTCCTGATCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTGGATCTAaggtgagtgacagtgacacaggacaaatcatgggtagggtagtgagaagttc Alignment from Spaln_aa2Genome GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCT-CTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG gctgtgggagtgagggccagtgcagcccatcagtgttttcttccctccagGTGCCACAGCCCTCATGTGTCCGTCGGGACTGGCAGCGGGTGTACGCTGCCcCTCAGTGATTCCCGTCTGTTGTTGTTTGATGCTCCTGATCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTGGATCTAAGgtgagtgacagtgacacaggacaaatcatgggtagggtagtgagaagttc Alignment from Spaln_nt2Genome GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTC-TCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG gctgtgggagtgagggccagtgcagcccatcagtgttttcttccctccagGTGCCACAGCCCTCATGTGTCCGTCGGGACTGGCAGCGGGTGTACGCTGCCCCTCAGTGATTCCCGTCTGTTGTTGTTTGATGCTCCTGATCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTGGATCTAAGgtgagtgacagtgacacaggacaaatcatgggtagggtagtgagaagttc Alignment from Pairagon GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCG-CTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG gctgtgggagtgagggccagtgcagcccatcagtgttttcttccctccagGTGCCACAGCCCTCATGTGTCCGTCGGGACTGGCAGCGGGTGTACGCTGCCCCTCAGTGATTCCCGTCTGTTGTTGTTTGATGCTCCTGATCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTGGATCTAAGgtgagtgacagtgacacaggacaaatcatgggtagggtagtgagaagttc Alignment from Exonerate_protein2genome GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCT-CTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG gctgtgggagtgagggccagtgcagcccatcagtgttttcttccctccagGTGCCACAGCCCTCATGTGTCCGTCGGGACTGGCAGCGGGTGTACGCTGCCCCTCAGTGATTCCCGTCTGTTGTTGTTTGATGCTCCTGATCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTGGATCTAAGgtgagtgacagtgacacaggacaaatcatgggtagggtagtgagaagttc Alignment from Exonerate_coding2genome GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCT-CTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG gctgtgggagtgagggccagtgcagcccatcagtgttttcttccctccagGTGCCACAGCCCTCATGTGTCCGTCGGGACTGGCAGCGGGTGTACGCTGCCCCTCAGTGATTCCCGTCTGTTGTTGTTTGATGCTCCTGATCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTGGATCTAAGgtgagtgacagtgacacaggacaaatcatgggtagggtagtgagaagttc Alignment from GeneWise GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCC-GCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG gctgtgggagtgagggccagtgcagcccatcagtgttttcttccctccagGTGCCACAGCCCTCATGTGTCCGTCGGGACTGGCAGCGGGTGTACGCTGCCCCTCAGTGATTCCCGTCTGTTGTTGTTTGATGCTCCTGATCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTGGATCTAAGgtgagtgacagtgacacaggacaaatcatgggtagggtagtgagaagttc #### Cdc42bpg_ID1597_27 --> 1 - 0 Original Alignment gGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATT-CATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcatgcaggggcggtatctctgtcatccttgcctctgcctaggGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGGgtgggtgctcagggtgggatggcccagcgtccatctctcttcctgtgctg Alignment from CESAR gGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATT-CATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcatgcaggggcggtatctctgtcatccttgcctctgcctaggGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGGgtgggtgctcagggtgggatggcccagcgtccatctctcttcctgtgctg Alignment from Spaln_aa2Genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATT-CATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcatgcaggggcggtatctctgtcatccttgcctctgcctagGGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTcCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGGgtgggtgctcagggtgggatggcccagcgtccatctctcttcctgtgctg Alignment from Spaln_nt2Genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATT-CATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcatgcaggggcggtatctctgtcatccttgcctctgcctagGGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGGgtgggtgctcagggtgggatggcccagcgtccatctctcttcctgtgctg Alignment from Pairagon GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATT-CATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcatgcaggggcggtatctctgtcatccttgcctctgcctagGGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGGgtgggtgctcagggtgggatggcccagcgtccatctctcttcctgtgctg Alignment from Exonerate_protein2genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATT-CATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcatgcaggggcggtatctctgtcatccttgcctctgcctagGGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGGgtgggtgctcagggtgggatggcccagcgtccatctctcttcctgtgctg Alignment from Exonerate_coding2genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATT-CATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcatgcaggggcggtatctctgtcatccttgcctctgcctagGGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGGgtgggtgctcagggtgggatggcccagcgtccatctctcttcctgtgctg Alignment from GeneWise GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTC-ATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcatgcaggggcggtatctctgtcatccttgcctctgcctagGGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGGgtgggtgctcagggtgggatggcccagcgtccatctctcttcctgtgctg #### Cfl1_ID1061_3 --> 1 - 1 Original Alignment gGCCCCCGAGAATGCACCCCTCAAGAGC-AAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAg tcttgagcattctggatgtagctgcagcattctttgttttttctttgaaggGCCCCCGAAAATGCACCCCTCAAGAGCCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAggtaagcattccaccttcagcaaaaacaatgggcacagtctcctgctagct Alignment from CESAR gGCCCCCGAGAATGCACCCCTCAAGAGC-AAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAg tcttgagcattctggatgtagctgcagcattctttgttttttctttgaaggGCCCCCGAAAATGCACCCCTCAAGAGCCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAggtaagcattccaccttcagcaaaaacaatgggcacagtctcctgctagct Alignment from Spaln_aa2Genome GGCCCCCGAGAATGCACCCCTCAAGAGC-AAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG tcttgagcattctggatgtagctgcagcattctttgttttttctttgaagGGCCCCCGAAAATGCACCCCTCAAGAGCcAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAGgtaagcattccaccttcagcaaaaacaatgggcacagtctcctgctagct Alignment from Spaln_nt2Genome GGCCCCCGAGAATGCACCCCTCAAGAG-CAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG tcttgagcattctggatgtagctgcagcattctttgttttttctttgaagGGCCCCCGAAAATGCACCCCTCAAGAGCCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAGgtaagcattccaccttcagcaaaaacaatgggcacagtctcctgctagct Alignment from Pairagon GGCCCCCGAGAATGCACCCCTCAAGAG-CAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG tcttgagcattctggatgtagctgcagcattctttgttttttctttgaagGGCCCCCGAAAATGCACCCCTCAAGAGCCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAGgtaagcattccaccttcagcaaaaacaatgggcacagtctcctgctagct Alignment from Exonerate_protein2genome GGCCCCCGAGAATGCACCCCTCAAGAGC-AAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG tcttgagcattctggatgtagctgcagcattctttgttttttctttgaagGGCCCCCGAAAATGCACCCCTCAAGAGCCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAGgtaagcattccaccttcagcaaaaacaatgggcacagtctcctgctagct Alignment from Exonerate_coding2genome GGCCCCCGAGAATGCACCCCTCAAGAG-CAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG tcttgagcattctggatgtagctgcagcattctttgttttttctttgaagGGCCCCCGAAAATGCACCCCTCAAGAGCCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAGgtaagcattccaccttcagcaaaaacaatgggcacagtctcctgctagct Alignment from GeneWise GGCCCCCGAGAATGCACCCCTCAAG-AGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG tcttgagcattctggatgtagctgcagcattctttgttttttctttgaagGGCCCCCGAAAATGCACCCCTCAAGAGCCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAGgtaagcattccaccttcagcaaaaacaatgggcacagtctcctgctagct #### Col17a1_ID10272_50 --> 2 - 1 Original Alignment ccTACGGCACTATCCCGGGACCA-CCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAg tcctaagccttgagctctggtctaaaggcaccttgtgtgctgccctgcagccTATGGCACCATCCCAGGACCACCCTGGCCAGAAAGGAGATGTGGGGACCCCAGGCCCCAAAggtgagtgagcaggacccctgggttaattgattatgccttagtgccatact Alignment from CESAR ccTACGGCACTATCCCGGGACCA-CCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAg tcctaagccttgagctctggtctaaaggcaccttgtgtgctgccctgcagccTATGGCACCATCCCAGGACCACCCTGGCCAGAAAGGAGATGTGGGGACCCCAGGCCCCAAAggtgagtgagcaggacccctgggttaattgattatgccttagtgccatact Alignment from Spaln_aa2Genome CCTACGGCACTATCCCGGGACCA-CCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG tcctaagccttgagctctggtctaaaggcaccttgtgtgctgccctgcagCCTATGGCACCATCCCAGGACCAcCCTGGCCAGAAAGGAGATGTGGGGACCCCAGGCCCCAAAGgtgagtgagcaggacccctgggttaattgattatgccttagtgccatact Alignment from Spaln_nt2Genome CCTACGGCACTATCCCGGGACCA-CCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG tcctaagccttgagctctggtctaaaggcaccttgtgtgctgccctgcagCCTATGGCACCATCCCAGGACCACCCTGGCCAGAAAGGAGATGTGGGGACCCCAGGCCCCAAAGgtgagtgagcaggacccctgggttaattgattatgccttagtgccatact Alignment from Pairagon CCTACGGCACTATCCCGGGACCA-CCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG tcctaagccttgagctctggtctaaaggcaccttgtgtgctgccctgcagCCTATGGCACCATCCCAGGACCACCCTGGCCAGAAAGGAGATGTGGGGACCCCAGGCCCCAAAGgtgagtgagcaggacccctgggttaattgattatgccttagtgccatact Alignment from Exonerate_protein2genome CCTACGGCACTATCCCGGGACCA-CCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG tcctaagccttgagctctggtctaaaggcaccttgtgtgctgccctgcagCCTATGGCACCATCCCAGGACCACCCTGGCCAGAAAGGAGATGTGGGGACCCCAGGCCCCAAAGgtgagtgagcaggacccctgggttaattgattatgccttagtgccatact Alignment from Exonerate_coding2genome CCTACGGCACTATCCCGGGACCA-CCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG tcctaagccttgagctctggtctaaaggcaccttgtgtgctgccctgcagCCTATGGCACCATCCCAGGACCACCCTGGCCAGAAAGGAGATGTGGGGACCCCAGGCCCCAAAGgtgagtgagcaggacccctgggttaattgattatgccttagtgccatact Alignment from GeneWise CCTACGGCACTATCCCGGGACCACCT-GGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG tcctaagccttgagctctggtctaaaggcaccttgtgtgctgccctgcagCCTATGGCACCATCCCAGGACCACCCTGGCCAGAAAGGAGATGTGGGGACCCCAGGCCCCAAAGgtgagtgagcaggacccctgggttaattgattatgccttagtgccatact #### Col17a1_ID10273_49 --> 2 - 1 Original Alignment gtCAGGGTCTGCTACAAGGGATGGCCTACACTGTCCAGGGC-CCACCTGGGCCCCAAGGCCCTCCTGGCATCAGCAGGGTCTTCTCAGCCTACAGCAACGTGACACAAGACCTCATGGACTTCTTCCAAa tatgctgcttcctacactgcttcctacaccaggttccctcctgcccttaggtCAGGGTCTGCTACAAGGGATGGCCTACACTGTCCAGGGCCCCGCCTGGGCCTCAAGGCCCTCCTGGCATCAGCAGGGTCTTCTCAGCCTACAGCAATGTGACACAAGACCTCATGGACTTCTTCCAAagtaagtatagctccatgcgttgcccagcattggcctgctgtttagtcttt Alignment from CESAR gtCAGGGTCTGCTACAAGGGATGGCCTACACTGTCCAGGGCCCA-CCTGGGCCCCAAGGCCCTCCTGGCATCAGCAGGGTCTTCTCAGCCTACAGCAACGTGACACAAGACCTCATGGACTTCTTCCAAa tatgctgcttcctacactgcttcctacaccaggttccctcctgcccttaggtCAGGGTCTGCTACAAGGGATGGCCTACACTGTCCAGGGCCCCGCCTGGGCCTCAAGGCCCTCCTGGCATCAGCAGGGTCTTCTCAGCCTACAGCAATGTGACACAAGACCTCATGGACTTCTTCCAAagtaagtatagctccatgcgttgcccagcattggcctgctgtttagtcttt Alignment from Spaln_aa2Genome GTCAGGGTCTGCTACAAGGGATGGCCTACACTGTCCAGGGCCCA-CCTGGGCCCCAAGGCCCTCCTGGCATCAGCAGGGTCTTCTCAGCCTACAGCAACGTGACACAAGACCTCATGGACTTCTTCCAAA tatgctgcttcctacactgcttcctacaccaggttccctcctgcccttagGTCAGGGTCTGCTACAAGGGATGGCCTACACTGTCCAGGGCCCCgCCTGGGCCTCAAGGCCCTCCTGGCATCAGCAGGGTCTTCTCAGCCTACAGCAATGTGACACAAGACCTCATGGACTTCTTCCAAAgtaagtatagctccatgcgttgcccagcattggcctgctgtttagtcttt Alignment from Spaln_nt2Genome GTCAGGGTCTGCTACAAGGGATGGCCTACACTGTCCAGGG-CCCACCTGGGCCCCAAGGCCCTCCTGGCATCAGCAGGGTCTTCTCAGCCTACAGCAACGTGACACAAGACCTCATGGACTTCTTCCAAA tatgctgcttcctacactgcttcctacaccaggttccctcctgcccttagGTCAGGGTCTGCTACAAGGGATGGCCTACACTGTCCAGGGCCCCGCCTGGGCCTCAAGGCCCTCCTGGCATCAGCAGGGTCTTCTCAGCCTACAGCAATGTGACACAAGACCTCATGGACTTCTTCCAAAgtaagtatagctccatgcgttgcccagcattggcctgctgtttagtcttt Alignment from Pairagon GTCAGGGTCTGCTACAAGGGATGGCCTACACTGTCCAGGG-CCCACCTGGGCCCCAAGGCCCTCCTGGCATCAGCAGGGTCTTCTCAGCCTACAGCAACGTGACACAAGACCTCATGGACTTCTTCCAAA tatgctgcttcctacactgcttcctacaccaggttccctcctgcccttagGTCAGGGTCTGCTACAAGGGATGGCCTACACTGTCCAGGGCCCCGCCTGGGCCTCAAGGCCCTCCTGGCATCAGCAGGGTCTTCTCAGCCTACAGCAATGTGACACAAGACCTCATGGACTTCTTCCAAAgtaagtatagctccatgcgttgcccagcattggcctgctgtttagtcttt Alignment from Exonerate_protein2genome GTCAGGGTCTGCTACAAGGGATGGCCTACACTGTCCAGGGC-CCACCTGGGCCCCAAGGCCCTCCTGGCATCAGCAGGGTCTTCTCAGCCTACAGCAACGTGACACAAGACCTCATGGACTTCTTCCAAA tatgctgcttcctacactgcttcctacaccaggttccctcctgcccttagGTCAGGGTCTGCTACAAGGGATGGCCTACACTGTCCAGGGCCCCGCCTGGGCCTCAAGGCCCTCCTGGCATCAGCAGGGTCTTCTCAGCCTACAGCAATGTGACACAAGACCTCATGGACTTCTTCCAAAgtaagtatagctccatgcgttgcccagcattggcctgctgtttagtcttt Alignment from Exonerate_coding2genome GTCAGGGTCTGCTACAAGGGATGGCCTACACTGTCCAGGGC-CCACCTGGGCCCCAAGGCCCTCCTGGCATCAGCAGGGTCTTCTCAGCCTACAGCAACGTGACACAAGACCTCATGGACTTCTTCCAAA tatgctgcttcctacactgcttcctacaccaggttccctcctgcccttagGTCAGGGTCTGCTACAAGGGATGGCCTACACTGTCCAGGGCCCCGCCTGGGCCTCAAGGCCCTCCTGGCATCAGCAGGGTCTTCTCAGCCTACAGCAATGTGACACAAGACCTCATGGACTTCTTCCAAAgtaagtatagctccatgcgttgcccagcattggcctgctgtttagtcttt Alignment from GeneWise GGTCTGCTACAAGGGATGGCCTACACTGTCCAG-GGCCCACCTGGGCCCCAAGGCCCTCCTGGCATCAGCAGGGTCTTCTCAGCCTACAGCAACGTGACACAAGACCTCATGGACTTCTTCCAAA tatgctgcttcctacactgcttcctacaccaggttccctcctgcccttaggtcagGGTCTGCTACAAGGGATGGCCTACACTGTCCAGGGCCCCGCCTGGGCCTCAAGGCCCTCCTGGCATCAGCAGGGTCTTCTCAGCCTACAGCAATGTGACACAAGACCTCATGGACTTCTTCCAAAgtaagtatagctccatgcgttgcccagcattggcctgctgtttagtcttt #### Col17a1_ID10275_47 --> 2 - 1 Original Alignment ccGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCT-GAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAa attttctgtccaggctcctgaccttccttctgtctctctgctctgaacagccGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCACCAGGTCCTCGAGGGCCCCCAGGTGTTTCAGCAGCTCTGTCCACCTATGCAGCTCGAGAACAGTGATAACTTCCGCAGTGAGCTGATTAGCTACCTCACAagtgagtacccttgatgtgggccccccgtgccctccccctagactttcaca Alignment from CESAR ccGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCT-GAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAa attttctgtccaggctcctgaccttccttctgtctctctgctctgaacagccGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCACCAGGTCCTCGAGGGCCCCCAGGTGTTTCAGCAGCTCTGTCCACCTATGCAGCTCGAGAACAGTGATAACTTCCGCAGTGAGCTGATTAGCTACCTCACAagtgagtacccttgatgtgggccccccgtgccctccccctagactttcaca Alignment from Spaln_aa2Genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCT-GAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA attttctgtccaggctcctgaccttccttctgtctctctgctctgaacagCCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCACCAGGTCCTCGAGGGCCCCCAGGTGTTTCAGCAGCTCTGTCCACCTATGCAGCTcGAGAACAGTGATAACTTCCGCAGTGAGCTGATTAGCTACCTCACAAgtgagtacccttgatgtgggccccccgtgccctccccctagactttcaca Alignment from Spaln_nt2Genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCT-GAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA attttctgtccaggctcctgaccttccttctgtctctctgctctgaacagCCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCACCAGGTCCTCGAGGGCCCCCAGGTGTTTCAGCAGCTCTGTCCACCTATGCAGCTCGAGAACAGTGATAACTTCCGCAGTGAGCTGATTAGCTACCTCACAAgtgagtacccttgatgtgggccccccgtgccctccccctagactttcaca Alignment from Pairagon CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCT-GAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA attttctgtccaggctcctgaccttccttctgtctctctgctctgaacagCCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCACCAGGTCCTCGAGGGCCCCCAGGTGTTTCAGCAGCTCTGTCCACCTATGCAGCTCGAGAACAGTGATAACTTCCGCAGTGAGCTGATTAGCTACCTCACAAgtgagtacccttgatgtgggccccccgtgccctccccctagactttcaca Alignment from Exonerate_protein2genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCT-GAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA attttctgtccaggctcctgaccttccttctgtctctctgctctgaacagCCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCACCAGGTCCTCGAGGGCCCCCAGGTGTTTCAGCAGCTCTGTCCACCTATGCAGCTCGAGAACAGTGATAACTTCCGCAGTGAGCTGATTAGCTACCTCACAAgtgagtacccttgatgtgggccccccgtgccctccccctagactttcaca Alignment from Exonerate_coding2genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCT-GAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA attttctgtccaggctcctgaccttccttctgtctctctgctctgaacagCCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCACCAGGTCCTCGAGGGCCCCCAGGTGTTTCAGCAGCTCTGTCCACCTATGCAGCTCGAGAACAGTGATAACTTCCGCAGTGAGCTGATTAGCTACCTCACAAgtgagtacccttgatgtgggccccccgtgccctccccctagactttcaca Alignment from GeneWise CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCA-GCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA attttctgtccaggctcctgaccttccttctgtctctctgctctgaacagCCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCACCAGGTCCTCGAGGGCCCCCAGGTGTTTCAGCAGCTCTGTCCACCTATGCAGCTCGAGAACAGTGATAACTTCCGCAGTGAGCTGATTAGCTACCTCACAAgtgagtacccttgatgtgggccccccgtgccctccccctagactttcaca #### Col17a1_ID10277_45 --> 2 - 1 Original Alignment ggAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGA-GAGCTGAGCAGACACATTCTCAACTATATGTCAa gacactattgggcttctagattgattcaaaacatccctatctgcctataggaAACGATGTGTGGCAATACTTACGTCAGAATCTGGTGGGTCCTCCCAGTCCCCCAGGGCCACCAGGCGTCAGTGGAGAAGGGTCTCTCCTGTCT---------GGACGAGCTGAGCAAACACATTCTCAACTATATGTCAagtaggtaatcaggattaagggcaaccaaccccactaagatggccccagta Alignment from CESAR ggAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAa gacactattgggcttctagattgattcaaaacatccctatctgcctataggaAACGATGTGTGGCAATACTTACGTCAGAATCTGGTGGGTCCTCCCAGTCCCCCAGGGCCACCAGGCGTCAGTGGAGAAGGGTCTCTCCTGT--CTGGAC------GAGCTGAGCAAACACATTCTCAACTATATGTCAagtaggtaatcaggattaagggcaaccaaccccactaagatggccccagta Alignment from Spaln_aa2Genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA gacactattgggcttctagattgattcaaaacatccctatctgcctatagGAAACGATGTGTGGCAATACTTACGTCAGAATCTGGTGGGTCCTCCCAGTCCCCCAGGGCCACCAGGCGTCAGTGGAGAAGGGTCTCTCCTGTCTG--------GACGAGCTGAGCAAACACATTCTCAACTATATGTCAAgtaggtaatcaggattaagggcaaccaaccccactaagatggccccagta Alignment from Spaln_nt2Genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA gacactattgggcttctagattgattcaaaacatccctatctgcctatagGAAACGATGTGTGGCAATACTTACGTCAGAATCTGGTGGGTCCTCCCAGTCCCCCAGGGCCACCAGGCGTCAGTGGAGAAGGGTCTCTCCTGTC--TGGAC------GAGCTGAGCAAACACATTCTCAACTATATGTCAAgtaggtaatcaggattaagggcaaccaaccccactaagatggccccagta Alignment from Pairagon GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA gacactattgggcttctagattgattcaaaacatccctatctgcctatagGAAACGATGTGTGGCAATACTTACGTCAGAATCTGGTGGGTCCTCCCAGTCCCCCAGGGCCACCAGGCGTCAGTGGAGAAGGGTCTCTCCTGTC--TGGAC------GAGCTGAGCAAACACATTCTCAACTATATGTCAAgtaggtaatcaggattaagggcaaccaaccccactaagatggccccagta Alignment from Exonerate_protein2genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCA-GGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA gacactattgggcttctagattgattcaaaacatccctatctgcctatagGAAACGATGTGTGGCAATACTTACGTCAGAATCTGGTG---------GGTCCTCCCAGTCCCCCAGGGCCACCAGGCGTCAGTGGAGAAGGGTCTCTCCTGTCTGGACGAGCTGAGCAAACACATTCTCAACTATATGTCAAgtaggtaatcaggattaagggcaaccaaccccactaagatggccccagta Alignment from Exonerate_coding2genome GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA gacactattgggcttctagattgattcaaaacatccctatctgcctatagGAAACGATGTGTGGCAATACTTACGTCAGAATCTGGTGGGTCCTCCCAGTCCCCCAGGGCCACCAGGCGTCAGTGGAGAAGGGTCTCTCCTGTCTG--------GACGAGCTGAGCAAACACATTCTCAACTATATGTCAAgtaggtaatcaggattaagggcaaccaaccccactaagatggccccagta Alignment from GeneWise GGAACGATGTGTGGCAGTACTTACGTCAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA gacactattgggcttctagattgattcaaaacatccctatctgcctatagGAAACGATGTGTGGCAATACTTACGTCAGAATCTGGTGGGTCCTCCCAGTCCCCCAGGGCCACCAGGCGTCAGTGGAGAAGGGTCTCTCCTGT--CTGGAC------GAGCTGAGCAAACACATTCTCAACTATATGTCAAgtaggtaatcaggattaagggcaaccaaccccactaagatggccccagta #### Col17a1_ID10278_44 --> 2 - 1 Original Alignment caTCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATC-TTGGCCATGCTGCGAc aggccatggaggtcagccaagctcctctgcaccaccagcttcttttctagcaTCAGGGTATAGTGCTGGCTTGTCCTCTGCTTCCTCCTCAGAAGATATCCTTGGCCATGCTGCGAcgtgagtatcccacagtgggaaggagtagggccttttacctccttcctgtc Alignment from CESAR caTCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATC-TTGGCCATGCTGCGAc aggccatggaggtcagccaagctcctctgcaccaccagcttcttttctagcaTCAGGGTATAGTGCTGGCTTGTCCTCTGCTTCCTCCTCAGAAGATATCCTTGGCCATGCTGCGAcgtgagtatcccacagtgggaaggagtagggccttttacctccttcctgtc Alignment from Spaln_aa2Genome CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATC-TTGGCCATGCTGCGAC aggccatggaggtcagccaagctcctctgcaccaccagcttcttttctagCATCAGGGTATAGTGCTGGCTTGTCCTCTGCTTCCTCCTCAGAAGATATCcTTGGCCATGCTGCGACgtgagtatcccacagtgggaaggagtagggccttttacctccttcctgtc Alignment from Spaln_nt2Genome CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATAT-CTTGGCCATGCTGCGAC aggccatggaggtcagccaagctcctctgcaccaccagcttcttttctagCATCAGGGTATAGTGCTGGCTTGTCCTCTGCTTCCTCCTCAGAAGATATCCTTGGCCATGCTGCGACgtgagtatcccacagtgggaaggagtagggccttttacctccttcctgtc Alignment from Pairagon CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATAT-CTTGGCCATGCTGCGAC aggccatggaggtcagccaagctcctctgcaccaccagcttcttttctagCATCAGGGTATAGTGCTGGCTTGTCCTCTGCTTCCTCCTCAGAAGATATCCTTGGCCATGCTGCGACgtgagtatcccacagtgggaaggagtagggccttttacctccttcctgtc Alignment from Exonerate_protein2genome CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATC-TTGGCCATGCTGCGAC aggccatggaggtcagccaagctcctctgcaccaccagcttcttttctagCATCAGGGTATAGTGCTGGCTTGTCCTCTGCTTCCTCCTCAGAAGATATCCTTGGCCATGCTGCGACgtgagtatcccacagtgggaaggagtagggccttttacctccttcctgtc Alignment from Exonerate_coding2genome CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATC-TTGGCCATGCTGCGAC aggccatggaggtcagccaagctcctctgcaccaccagcttcttttctagCATCAGGGTATAGTGCTGGCTTGTCCTCTGCTTCCTCCTCAGAAGATATCCTTGGCCATGCTGCGACgtgagtatcccacagtgggaaggagtagggccttttacctccttcctgtc Alignment from GeneWise CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTG-GCCATGCTGCGAC aggccatggaggtcagccaagctcctctgcaccaccagcttcttttctagCATCAGGGTATAGTGCTGGCTTGTCCTCTGCTTCCTCCTCAGAAGATATCCTTGGCCATGCTGCGACgtgagtatcccacagtgggaaggagtagggccttttacctccttcctgtc #### Col17a1_ID10279_43 --> 2 - 1 Original Alignment gtGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCC-CAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGt tcttggcagcaggcttgatcatgtcatcgtgactcctctcctctgcctaggtGACAACATCAGGACTTATCTCCCGGGGGTTCAGGGTCCCCCAGGCCCCCCAGGCCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTTGACTACTCCCCAGCTGGCAAGCCAGGTTGTTAGCTACTTGCGGtgtaggtctgtgacacttcttgtgttgttaccctcaatacctccggagctc Alignment from CESAR gtGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCC-CAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGt tcttggcagcaggcttgatcatgtcatcgtgactcctctcctctgcctaggtGACAACATCAGGACTTATCTCCCGGGGGTTCAGGGTCCCCCAGGCCCCCCAGGCCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTTGACTACTCCCCAGCTGGCAAGCCAGGTTGTTAGCTACTTGCGGtgtaggtctgtgacacttcttgtgttgttaccctcaatacctccggagctc Alignment from Spaln_aa2Genome GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCC-CAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT tcttggcagcaggcttgatcatgtcatcgtgactcctctcctctgcctagGTGACAACATCAGGACTTATCTCCCGGGGGTTCAGGGTCCCCCAGGCCCCCCAGGCCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTTGACTACTCCcCAGCTGGCAAGCCAGGTTGTTAGCTACTTGCGGTgtaggtctgtgacacttcttgtgttgttaccctcaatacctccggagctc Alignment from Spaln_nt2Genome GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCC-CAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT tcttggcagcaggcttgatcatgtcatcgtgactcctctcctctgcctagGTGACAACATCAGGACTTATCTCCCGGGGGTTCAGGGTCCCCCAGGCCCCCCAGGCCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTTGACTACTCCCCAGCTGGCAAGCCAGGTTGTTAGCTACTTGCGGTgtaggtctgtgacacttcttgtgttgttaccctcaatacctccggagctc Alignment from Pairagon GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACT-CCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT tcttggcagcaggcttgatcatgtcatcgtgactcctctcctctgcctagGTGACAACATCAGGACTTATCTCCCGGGGGTTCAGGGTCCCCCAGGCCCCCCAGGCCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTTGACTACTCCCCAGCTGGCAAGCCAGGTTGTTAGCTACTTGCGGTgtaggtctgtgacacttcttgtgttgttaccctcaatacctccggagctc Alignment from Exonerate_protein2genome GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCC-CAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT tcttggcagcaggcttgatcatgtcatcgtgactcctctcctctgcctagGTGACAACATCAGGACTTATCTCCCGGGGGTTCAGGGTCCCCCAGGCCCCCCAGGCCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTTGACTACTCCCCAGCTGGCAAGCCAGGTTGTTAGCTACTTGCGGTgtaggtctgtgacacttcttgtgttgttaccctcaatacctccggagctc Alignment from Exonerate_coding2genome GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCC-CAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT tcttggcagcaggcttgatcatgtcatcgtgactcctctcctctgcctagGTGACAACATCAGGACTTATCTCCCGGGGGTTCAGGGTCCCCCAGGCCCCCCAGGCCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTTGACTACTCCCCAGCTGGCAAGCCAGGTTGTTAGCTACTTGCGGTgtaggtctgtgacacttcttgtgttgttaccctcaatacctccggagctc Alignment from GeneWise GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTAC-TCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT tcttggcagcaggcttgatcatgtcatcgtgactcctctcctctgcctagGTGACAACATCAGGACTTATCTCCCGGGGGTTCAGGGTCCCCCAGGCCCCCCAGGCCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTTGACTACTCCCCAGCTGGCAAGCCAGGTTGTTAGCTACTTGCGGTgtaggtctgtgacacttcttgtgttgttaccctcaatacctccggagctc #### Col17a1_ID10280_42 --> 2 - 1 Original Alignment ggGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGG-CCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAa tacttttggagagagaaggagctgagtcaactatattattatttttacagggGCATCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCTGAATACATGCAAagtatgggcttcgacaccccacaccatggacaggagaggaaaaaggagggt Alignment from CESAR ggGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGG-CCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAa tacttttggagagagaaggagctgagtcaactatattattatttttacagggGCATCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCTGAATACATGCAAagtatgggcttcgacaccccacaccatggacaggagaggaaaaaggagggt Alignment from Spaln_aa2Genome GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCA-GGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tacttttggagagagaaggagctgagtcaactatattattatttttacagGGGCATCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAgGGCCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCTGAATACATGCAAAgtatgggcttcgacaccccacaccatggacaggagaggaaaaaggagggt Alignment from Spaln_nt2Genome GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCA-GGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tacttttggagagagaaggagctgagtcaactatattattatttttacagGGGCATCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCTGAATACATGCAAAgtatgggcttcgacaccccacaccatggacaggagaggaaaaaggagggt Alignment from Pairagon GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGG-CCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tacttttggagagagaaggagctgagtcaactatattattatttttacagGGGCATCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCTGAATACATGCAAAgtatgggcttcgacaccccacaccatggacaggagaggaaaaaggagggt Alignment from Exonerate_protein2genome GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCA-GGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tacttttggagagagaaggagctgagtcaactatattattatttttacagGGGCATCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCTGAATACATGCAAAgtatgggcttcgacaccccacaccatggacaggagaggaaaaaggagggt Alignment from Exonerate_coding2genome GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCA-GGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tacttttggagagagaaggagctgagtcaactatattattatttttacagGGGCATCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCTGAATACATGCAAAgtatgggcttcgacaccccacaccatggacaggagaggaaaaaggagggt Alignment from GeneWise GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCT-GGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tacttttggagagagaaggagctgagtcaactatattattatttttacagGGGCATCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCTGAATACATGCAAAgtatgggcttcgacaccccacaccatggacaggagaggaaaaaggagggt #### Col17a1_ID10281_41 --> 2 - 1 Original Alignment gtGATCCTGGTGTCCCAGGTACTCCTGGC-ATCTCTGGTGGTCTTTCTCATg cccggggaaggaagcacccataacacatacagcccctttatttttcctaggtGATCCTGGTGTCCCAGGTACTCCTGGCCATCTCTGGTGGTCTTTCTCATggtaagaattgaagatgaatagagttcctctcccatccttggagggaactt Alignment from CESAR gtGATCCTGGTGTCCCAGGTACTCCTGGC-ATCTCTGGTGGTCTTTCTCATg cccggggaaggaagcacccataacacatacagcccctttatttttcctaggtGATCCTGGTGTCCCAGGTACTCCTGGCCATCTCTGGTGGTCTTTCTCATggtaagaattgaagatgaatagagttcctctcccatccttggagggaactt Alignment from Spaln_aa2Genome GTGATCCTGGTGTCCCAGGTACTCCTGGC-ATCTCTGGTGGTCTTTCTCATG cccggggaaggaagcacccataacacatacagcccctttatttttcctagGTGATCCTGGTGTCCCAGGTACTCCTGGCcATCTCTGGTGGTCTTTCTCATGgtaagaattgaagatgaatagagttcctctcccatccttggagggaactt Alignment from Spaln_nt2Genome GTGATCCTGGTGTCCCAGGTACTCCTGG-CATCTCTGGTGGTCTTTCTCATG cccggggaaggaagcacccataacacatacagcccctttatttttcctagGTGATCCTGGTGTCCCAGGTACTCCTGGCCATCTCTGGTGGTCTTTCTCATGgtaagaattgaagatgaatagagttcctctcccatccttggagggaactt Alignment from Pairagon GTGATCCTGGTGTCCCAGGTACTCCTGG-CATCTCTGGTGGTCTTTCTCATG cccggggaaggaagcacccataacacatacagcccctttatttttcctagGTGATCCTGGTGTCCCAGGTACTCCTGGCCATCTCTGGTGGTCTTTCTCATGgtaagaattgaagatgaatagagttcctctcccatccttggagggaactt Alignment from Exonerate_protein2genome GTGATCCTGGTGTCCCAGGTACTCCTGGC-ATCTCTGGTGGTCTTTCTCATG cccggggaaggaagcacccataacacatacagcccctttatttttcctagGTGATCCTGGTGTCCCAGGTACTCCTGGCCATCTCTGGTGGTCTTTCTCATGgtaagaattgaagatgaatagagttcctctcccatccttggagggaactt Alignment from Exonerate_coding2genome GTGATCCTGGTGTCCCAGGTACTCCTGGC-ATCTCTGGTGGTCTTTCTCATG cccggggaaggaagcacccataacacatacagcccctttatttttcctagGTGATCCTGGTGTCCCAGGTACTCCTGGCCATCTCTGGTGGTCTTTCTCATGgtaagaattgaagatgaatagagttcctctcccatccttggagggaactt Alignment from GeneWise cccggggaaggaagcacccataacacatacagcccctttatttttcctaggtgatcctggtgtcccaggtactcctggccatctctggtggtctttctcatggtaagaattgaagatgaatagagttcctctcccatccttggagggaactt #### Col17a1_ID10282_40 --> 2 - 1 Original Alignment aaACCTTCTTCACTGGCCCT-CCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAg tactgagaaacatcccatcatttacaccaggatctattattgtttgccagaaACCTTCTTCACAGGACCTCCCAGGTCCACCTGGCCCCCCAGGCCCCAAGGGGGACCAAggtaggtgcagtggcttggagcgcctggagccagtgtgatgtgttctctcc Alignment from CESAR aaACCTTCTTCACTGGCCCT-CCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAg tactgagaaacatcccatcatttacaccaggatctattattgtttgccagaaACCTTCTTCACAGGACCTCCCAGGTCCACCTGGCCCCCCAGGCCCCAAGGGGGACCAAggtaggtgcagtggcttggagcgcctggagccagtgtgatgtgttctctcc Alignment from Spaln_aa2Genome AAACCTTCTTCACTGGCCCT-CCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAG tactgagaaacatcccatcatttacaccaggatctattattgtttgccagAAACCTTCTTCACAGGACCTcCCAGGTCCACCTGGCCCCCCAGGCCCCAAGGGGGACCAAGgtaggtgcagtggcttggagcgcctggagccagtgtgatgtgttctctcc Alignment from Spaln_nt2Genome AAACCTTCTTCACTGGCCCTCC-AGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAG tactgagaaacatcccatcatttacaccaggatctattattgtttgccagAAACCTTCTTCACAGGACCTCCCAGGTCCACCTGGCCCCCCAGGCCCCAAGGGGGACCAAGgtaggtgcagtggcttggagcgcctggagccagtgtgatgtgttctctcc Alignment from Pairagon AAACCTTCTTCACTGGCCCT-CCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAG tactgagaaacatcccatcatttacaccaggatctattattgtttgccagAAACCTTCTTCACAGGACCTCCCAGGTCCACCTGGCCCCCCAGGCCCCAAGGGGGACCAAGgtaggtgcagtggcttggagcgcctggagccagtgtgatgtgttctctcc Alignment from Exonerate_protein2genome AAACCTTCTTCACTGGCCCT-CCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAG tactgagaaacatcccatcatttacaccaggatctattattgtttgccagAAACCTTCTTCACAGGACCTCCCAGGTCCACCTGGCCCCCCAGGCCCCAAGGGGGACCAAGgtaggtgcagtggcttggagcgcctggagccagtgtgatgtgttctctcc Alignment from Exonerate_coding2genome AAACCTTCTTCACTGGCCCT-CCAGGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAG tactgagaaacatcccatcatttacaccaggatctattattgtttgccagAAACCTTCTTCACAGGACCTCCCAGGTCCACCTGGCCCCCCAGGCCCCAAGGGGGACCAAGgtaggtgcagtggcttggagcgcctggagccagtgtgatgtgttctctcc Alignment from GeneWise AAACCTTCTTCACTGGCCCTCCA-GGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAG tactgagaaacatcccatcatttacaccaggatctattattgtttgccagAAACCTTCTTCACAGGACCTCCCAGGTCCACCTGGCCCCCCAGGCCCCAAGGGGGACCAAGgtaggtgcagtggcttggagcgcctggagccagtgtgatgtgttctctcc #### Col17a1_ID10301_21 --> 2 - 1 Original Alignment gtATCCCTGGGCCCCTGGGCCAC-CCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTg cacagcaccaggaggaagcacagactgaagctagccttcttgtcctacaggtATCCCTGGGCCATTGGGCCACCCCTGGCCCAGAAGGACCAAAGGGACAAAAAGGCAGCATTggtgagtgcccctgtccttctagttgttcatttcctcctccatctcttcct Alignment from CESAR gtATCCCTGGGCCCCTGGGCCAC-CCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTg cacagcaccaggaggaagcacagactgaagctagccttcttgtcctacaggtATCCCTGGGCCATTGGGCCACCCCTGGCCCAGAAGGACCAAAGGGACAAAAAGGCAGCATTggtgagtgcccctgtccttctagttgttcatttcctcctccatctcttcct Alignment from Spaln_aa2Genome GTATCCCTGGGCCCCTGGGCCAC-CCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG cacagcaccaggaggaagcacagactgaagctagccttcttgtcctacagGTATCCCTGGGCCATTGGGCCACcCCTGGCCCAGAAGGACCAAAGGGACAAAAAGGCAGCATTGgtgagtgcccctgtccttctagttgttcatttcctcctccatctcttcct Alignment from Spaln_nt2Genome GTATCCCTGGGCCCCTGGGCCACCC-TGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG cacagcaccaggaggaagcacagactgaagctagccttcttgtcctacagGTATCCCTGGGCCATTGGGCCACCCCTGGCCCAGAAGGACCAAAGGGACAAAAAGGCAGCATTGgtgagtgcccctgtccttctagttgttcatttcctcctccatctcttcct Alignment from Pairagon GTATCCCTGGGCCCCTGGGCCA-CCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG cacagcaccaggaggaagcacagactgaagctagccttcttgtcctacagGTATCCCTGGGCCATTGGGCCACCCCTGGCCCAGAAGGACCAAAGGGACAAAAAGGCAGCATTGgtgagtgcccctgtccttctagttgttcatttcctcctccatctcttcct Alignment from Exonerate_protein2genome GTATCCCTGGGCCCCTGGGCCAC-CCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG cacagcaccaggaggaagcacagactgaagctagccttcttgtcctacagGTATCCCTGGGCCATTGGGCCACCCCTGGCCCAGAAGGACCAAAGGGACAAAAAGGCAGCATTGgtgagtgcccctgtccttctagttgttcatttcctcctccatctcttcct Alignment from Exonerate_coding2genome GTATCCCTGGGCCCCTGGGCCAC-CCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG cacagcaccaggaggaagcacagactgaagctagccttcttgtcctacagGTATCCCTGGGCCATTGGGCCACCCCTGGCCCAGAAGGACCAAAGGGACAAAAAGGCAGCATTGgtgagtgcccctgtccttctagttgttcatttcctcctccatctcttcct Alignment from GeneWise --CAAGGACCTAAAGGAGACCGAGGCCTTCCTGGGACCCCAGGTATCCCTGGGCCCCTGGGCCAC---------CCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG CACAGCACCAGGAGGAAGCACAGACTGAAGCTAGCCTTCTTGTCCTACAGGTATCCCTGGGCCATTGGGCCACCCCTGGCCCAGAAGGACCAAAGGGACAAAAAGGCAGCATTGgtgagtgcccctgtccttctagttgttcatttcctcctccatctcttcct #### Col17a1_ID10304_18 --> 2 - 1 Original Alignment ggAATCTCAGAGGAAGT-CCTGGTCCAAAAg aagagagagagcaagagagagagagactgttgctctcatcctgctttcagggAATCTCAGAGGAAGCCCCCAGTCCAAAAggtaagggagtggccccacctttcccctaagggaggcatggtctcctggga Alignment from CESAR ggAATCTCAGAGGAAGTCCT-GGTCCAAAAg aagagagagagcaagagagagagagactgttgctctcatcctgctttcagggAATCTCAGAGGAAGCCCCCAGTCCAAAAggtaagggagtggccccacctttcccctaagggaggcatggtctcctggga Alignment from Spaln_aa2Genome GGAATCTCAGAGGAAGTCCT-GGTCCAAAAG aagagagagagcaagagagagagagactgttgctctcatcctgctttcagGGAATCTCAGAGGAAGCCCCcAGTCCAAAAGgtaagggagtggccccacctttcccctaagggaggcatggtctcctggga Alignment from Spaln_nt2Genome GGAATCTCAGAGGAAGTCCTG-GTCCAAAAG aagagagagagcaagagagagagagactgttgctctcatcctgctttcagGGAATCTCAGAGGAAGCCCCCAGTCCAAAAGgtaagggagtggccccacctttcccctaagggaggcatggtctcctggga Alignment from Pairagon GGAATCTCAGAGGAAG-TCCTGGTCCAAAAG aagagagagagcaagagagagagagactgttgctctcatcctgctttcagGGAATCTCAGAGGAAGCCCCCAGTCCAAAAGgtaagggagtggccccacctttcccctaagggaggcatggtctcctggga Alignment from Exonerate_protein2genome GGAATCTCAGAGGAAGT-CCTGGTCCAAAAG aagagagagagcaagagagagagagactgttgctctcatcctgctttcagGGAATCTCAGAGGAAGCCCCCAGTCCAAAAGgtaagggagtggccccacctttcccctaagggaggcatggtctcctggga Alignment from Exonerate_coding2genome aagagagagagcaagagagagagagactgttgctctcatcctgctttcagggaatctcagaggaagcccccagtccaaaaggtaagggagtggccccacctttcccctaagggaggcatggtctcctggga Alignment from GeneWise aagagagagagcaagagagagagagactgttgctctcatcctgctttcagggaatctcagaggaagcccccagtccaaaaggtaagggagtggccccacctttcccctaagggaggcatggtctcctggga #### Col17a1_ID10308_14 --> 2 - 1 Original Alignment ctTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCT-GCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATg agggtgagtggggagacaatagaccggagttcgttttttattccttctagctTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTCGCATATGCCGCTGACACCTGCCTCAAGGCGGATGTGAATggtacgtaaaatctgaccctggccactgaacttccacaaagctgcatctca Alignment from CESAR ctTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCT-GCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATg agggtgagtggggagacaatagaccggagttcgttttttattccttctagctTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTCGCATATGCCGCTGACACCTGCCTCAAGGCGGATGTGAATggtacgtaaaatctgaccctggccactgaacttccacaaagctgcatctca Alignment from Spaln_aa2Genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCT-GCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agggtgagtggggagacaatagaccggagttcgttttttattccttctagCTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTcGCATATGCCGCTGACACCTGCCTCAAGGCGGATGTGAATGgtacgtaaaatctgaccctggccactgaacttccacaaagctgcatctca Alignment from Spaln_nt2Genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCT-GCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agggtgagtggggagacaatagaccggagttcgttttttattccttctagCTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTCGCATATGCCGCTGACACCTGCCTCAAGGCGGATGTGAATGgtacgtaaaatctgaccctggccactgaacttccacaaagctgcatctca Alignment from Pairagon CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCT-GCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agggtgagtggggagacaatagaccggagttcgttttttattccttctagCTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTCGCATATGCCGCTGACACCTGCCTCAAGGCGGATGTGAATGgtacgtaaaatctgaccctggccactgaacttccacaaagctgcatctca Alignment from Exonerate_protein2genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCT-GCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agggtgagtggggagacaatagaccggagttcgttttttattccttctagCTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTCGCATATGCCGCTGACACCTGCCTCAAGGCGGATGTGAATGgtacgtaaaatctgaccctggccactgaacttccacaaagctgcatctca Alignment from Exonerate_coding2genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCT-GCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agggtgagtggggagacaatagaccggagttcgttttttattccttctagCTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTCGCATATGCCGCTGACACCTGCCTCAAGGCGGATGTGAATGgtacgtaaaatctgaccctggccactgaacttccacaaagctgcatctca Alignment from GeneWise CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAG-GCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agggtgagtggggagacaatagaccggagttcgttttttattccttctagCTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTCGCATATGCCGCTGACACCTGCCTCAAGGCGGATGTGAATGgtacgtaaaatctgaccctggccactgaacttccacaaagctgcatctca #### Coro1b_ID352_2 --> 0 - 0 Original Alignment ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTT-CTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG agggaggtcaggactttgggttttctttctacctaaaatttcttattcagACGGGCCGCATTGACAAGGCATTCCCAACAGTGTGTGGGCACACAGGGCCTGTTCCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaagtaaagaaccgttcaagtcaggttttcaggatgtgtctgaggggtt Alignment from CESAR ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTT-CTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG agggaggtcaggactttgggttttctttctacctaaaatttcttattcagACGGGCCGCATTGACAAGGCATTCCCAACAGTGTGTGGGCACACAGGGCCTGTTCCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaagtaaagaaccgttcaagtcaggttttcaggatgtgtctgaggggtt Alignment from Spaln_aa2Genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTT-CTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG agggaggtcaggactttgggttttctttctacctaaaatttcttattcagACGGGCCGCATTGACAAGGCATTCCCAACAGTGTGTGGGCACACAGGGCCTGTTcCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaagtaaagaaccgttcaagtcaggttttcaggatgtgtctgaggggtt Alignment from Spaln_nt2Genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTT-CTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG agggaggtcaggactttgggttttctttctacctaaaatttcttattcagACGGGCCGCATTGACAAGGCATTCCCAACAGTGTGTGGGCACACAGGGCCTGTTCCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaagtaaagaaccgttcaagtcaggttttcaggatgtgtctgaggggtt Alignment from Pairagon ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTT-CTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG agggaggtcaggactttgggttttctttctacctaaaatttcttattcagACGGGCCGCATTGACAAGGCATTCCCAACAGTGTGTGGGCACACAGGGCCTGTTCCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaagtaaagaaccgttcaagtcaggttttcaggatgtgtctgaggggtt Alignment from Exonerate_protein2genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTT-CTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG agggaggtcaggactttgggttttctttctacctaaaatttcttattcagACGGGCCGCATTGACAAGGCATTCCCAACAGTGTGTGGGCACACAGGGCCTGTTCCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaagtaaagaaccgttcaagtcaggttttcaggatgtgtctgaggggtt Alignment from Exonerate_coding2genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTT-CTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG agggaggtcaggactttgggttttctttctacctaaaatttcttattcagACGGGCCGCATTGACAAGGCATTCCCAACAGTGTGTGGGCACACAGGGCCTGTTCCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaagtaaagaaccgttcaagtcaggttttcaggatgtgtctgaggggtt Alignment from GeneWise ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCT-GTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG agggaggtcaggactttgggttttctttctacctaaaatttcttattcagACGGGCCGCATTGACAAGGCATTCCCAACAGTGTGTGGGCACACAGGGCCTGTTCCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaagtaaagaaccgttcaagtcaggttttcaggatgtgtctgaggggtt #### Coro1b_ID354_4 --> 2 - 0 Original Alignment gtTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATC-TACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tctatgagtacatgtctggctaactgagcttgtttttgcctccaaactaggcTGTGACAATGTGGTACTTATCTGGAATGTGGGCGCTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCCTACAATGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCCTGCAAGGACAAGAGTGTCCGAATCATTGATCCTAGGCGGGGCACCCTGGTGGCAgtgagcatctccaaagggcaaatatgacaatgtccagactcagggccttg Alignment from CESAR gtTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATC-TACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tctatgagtacatgtctggctaactgagcttgtttttgcctccaaactaggcTGTGACAATGTGGTACTTATCTGGAATGTGGGCGCTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCCTACAATGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCCTGCAAGGACAAGAGTGTCCGAATCATTGATCCTAGGCGGGGCACCCTGGTGGCAgtgagcatctccaaagggcaaatatgacaatgtccagactcagggccttg Alignment from Spaln_aa2Genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATC-TACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tctatgagtacatgtctggctaactgagcttgtttttgcctccaaactagGCTGTGACAATGTGGTACTTATCTGGAATGTGGGCGCTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCcTACAATGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCCTGCAAGGACAAGAGTGTCCGAATCATTGATCCTAGGCGGGGCACCCTGGTGGCAgtgagcatctccaaagggcaaatatgacaatgtccagactcagggccttg Alignment from Spaln_nt2Genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCAT-CTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tctatgagtacatgtctggctaactgagcttgtttttgcctccaaactagGCTGTGACAATGTGGTACTTATCTGGAATGTGGGCGCTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCCTACAATGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCCTGCAAGGACAAGAGTGTCCGAATCATTGATCCTAGGCGGGGCACCCTGGTGGCAgtgagcatctccaaagggcaaatatgacaatgtccagactcagggccttg Alignment from Pairagon GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCAT-CTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tctatgagtacatgtctggctaactgagcttgtttttgcctccaaactagGCTGTGACAATGTGGTACTTATCTGGAATGTGGGCGCTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCCTACAATGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCCTGCAAGGACAAGAGTGTCCGAATCATTGATCCTAGGCGGGGCACCCTGGTGGCAgtgagcatctccaaagggcaaatatgacaatgtccagactcagggccttg Alignment from Exonerate_protein2genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATC-TACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tctatgagtacatgtctggctaactgagcttgtttttgcctccaaactagGCTGTGACAATGTGGTACTTATCTGGAATGTGGGCGCTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCCTACAATGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCCTGCAAGGACAAGAGTGTCCGAATCATTGATCCTAGGCGGGGCACCCTGGTGGCAgtgagcatctccaaagggcaaatatgacaatgtccagactcagggccttg Alignment from Exonerate_coding2genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATC-TACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tctatgagtacatgtctggctaactgagcttgtttttgcctccaaactagGCTGTGACAATGTGGTACTTATCTGGAATGTGGGCGCTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCCTACAATGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCCTGCAAGGACAAGAGTGTCCGAATCATTGATCCTAGGCGGGGCACCCTGGTGGCAgtgagcatctccaaagggcaaatatgacaatgtccagactcagggccttg Alignment from GeneWise GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTC-ATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tctatgagtacatgtctggctaactgagcttgtttttgcctccaaactagGCTGTGACAATGTGGTACTTATCTGGAATGTGGGCGCTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCCTACAATGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCCTGCAAGGACAAGAGTGTCCGAATCATTGATCCTAGGCGGGGCACCCTGGTGGCAgtgagcatctccaaagggcaaatatgacaatgtccagactcagggccttg #### Coro1b_ID355_5 --> 0 - 0 Original Alignment GAACGTGAAAAGGCT-CACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA agactcagggccttgatctgccctgtacgcagtttgtctttcccctacagGAACGTGAAAAGGCTCCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGATGGGAAGGTGTTCACCACGGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCAgtgagggatatagcaagactaatgcgggcaggtttgtgacctgggcctca Alignment from CESAR GAACGTGAAAAGGCT-CACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA agactcagggccttgatctgccctgtacgcagtttgtctttcccctacagGAACGTGAAAAGGCTCCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGATGGGAAGGTGTTCACCACGGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCAgtgagggatatagcaagactaatgcgggcaggtttgtgacctgggcctca Alignment from Spaln_aa2Genome GAACGTGAAAAGGCT-CACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA agactcagggccttgatctgccctgtacgcagtttgtctttcccctacagGAACGTGAAAAGGCTcCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGATGGGAAGGTGTTCACCACGGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCAgtgagggatatagcaagactaatgcgggcaggtttgtgacctgggcctca Alignment from Spaln_nt2Genome GAACGTGAAAAGGCT-CACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA agactcagggccttgatctgccctgtacgcagtttgtctttcccctacagGAACGTGAAAAGGCTCCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGATGGGAAGGTGTTCACCACGGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCAgtgagggatatagcaagactaatgcgggcaggtttgtgacctgggcctca Alignment from Pairagon GAACGTGAAAAGGCT-CACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA agactcagggccttgatctgccctgtacgcagtttgtctttcccctacagGAACGTGAAAAGGCTCCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGATGGGAAGGTGTTCACCACGGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCAgtgagggatatagcaagactaatgcgggcaggtttgtgacctgggcctca Alignment from Exonerate_protein2genome GAACGTGAAAAGGCT-CACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA agactcagggccttgatctgccctgtacgcagtttgtctttcccctacagGAACGTGAAAAGGCTCCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGATGGGAAGGTGTTCACCACGGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCAgtgagggatatagcaagactaatgcgggcaggtttgtgacctgggcctca Alignment from Exonerate_coding2genome GAACGTGAAAAGGCT-CACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA agactcagggccttgatctgccctgtacgcagtttgtctttcccctacagGAACGTGAAAAGGCTCCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGATGGGAAGGTGTTCACCACGGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCAgtgagggatatagcaagactaatgcgggcaggtttgtgacctgggcctca Alignment from GeneWise GAACGTGAAAAG-GCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA agactcagggccttgatctgccctgtacgcagtttgtctttcccctacagGAACGTGAAAAGGCTCCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGATGGGAAGGTGTTCACCACGGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCAgtgagggatatagcaagactaatgcgggcaggtttgtgacctgggcctca #### Coro1b_ID356_6 --> 0 - 0 Original Alignment GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCA-AGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttggaaggaggtgatgctgacttgaccgcctcttttttttaacctaaagGAAAACCTTGAGGAGCCCATGGCTCTGCAGGAGCTGGATTCACAGCAATGGGGCTCTACTGCCCTTTTACGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAGgtaggactgggtgggcagcaaacttaggctgagcataatggaaagctctc Alignment from CESAR GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCA-AGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttggaaggaggtgatgctgacttgaccgcctcttttttttaacctaaagGAAAACCTTGAGGAGCCCATGGCTCTGCAGGAGCTGGATTCACAGCAATGGGGCTCTACTGCCCTTTTACGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAGgtaggactgggtgggcagcaaacttaggctgagcataatggaaagctctc Alignment from Spaln_aa2Genome GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCA-AGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttggaaggaggtgatgctgacttgaccgcctcttttttttaacctaaagGAAAACCTTGAGGAGCCCATGGCTCTGCAGGAGCTGGATTCAcAGCAATGGGGCTCTACTGCCCTTTTACGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAGgtaggactgggtgggcagcaaacttaggctgagcataatggaaagctctc Alignment from Spaln_nt2Genome GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCA-AGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttggaaggaggtgatgctgacttgaccgcctcttttttttaacctaaagGAAAACCTTGAGGAGCCCATGGCTCTGCAGGAGCTGGATTCACAGCAATGGGGCTCTACTGCCCTTTTACGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAGgtaggactgggtgggcagcaaacttaggctgagcataatggaaagctctc Alignment from Pairagon GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCA-AGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttggaaggaggtgatgctgacttgaccgcctcttttttttaacctaaagGAAAACCTTGAGGAGCCCATGGCTCTGCAGGAGCTGGATTCACAGCAATGGGGCTCTACTGCCCTTTTACGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAGgtaggactgggtgggcagcaaacttaggctgagcataatggaaagctctc Alignment from Exonerate_protein2genome GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCA-AGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttggaaggaggtgatgctgacttgaccgcctcttttttttaacctaaagGAAAACCTTGAGGAGCCCATGGCTCTGCAGGAGCTGGATTCACAGCAATGGGGCTCTACTGCCCTTTTACGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAGgtaggactgggtgggcagcaaacttaggctgagcataatggaaagctctc Alignment from Exonerate_coding2genome GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCA-AGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttggaaggaggtgatgctgacttgaccgcctcttttttttaacctaaagGAAAACCTTGAGGAGCCCATGGCTCTGCAGGAGCTGGATTCACAGCAATGGGGCTCTACTGCCCTTTTACGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAGgtaggactgggtgggcagcaaacttaggctgagcataatggaaagctctc Alignment from GeneWise GAAAACCTTGAGGAGCCCATGGCCCTGCAGGAGCTGGATTCA-AGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttggaaggaggtgatgctgacttgaccgcctcttttttttaacctaaagGAAAACCTTGAGGAGCCCATGGCTCTGCAGGAGCTGGATTCACAGCAATGGGGCTCTACTGCCCTTTTACGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAGgtaggactgggtgggcagcaaacttaggctgagcataatggaaagctctc #### Csf2ra_ID13431_9 --> 2 - 2 Original Alignment agGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGA-GTGACGTGCAGGag atatgaacacactacttccagtcccctgataccttctctcccacgtgcagatGCGGAGGACACGCGAGTGCCCGGTGCACTCCTGTATGCAGTGACAGCCTGTGCAGTCCTACTGTGCGCGCTGGCGCTTGGACGTGACATGCAGGaggtatgacgatgggggctatggcagggggatggccagaatgagccagaatg Alignment from CESAR agGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGA-GTGACGTGCAGGag atatgaacacactacttccagtcccctgataccttctctcccacgtgcagatGCGGAGGACACGCGAGTGCCCGGTGCACTCCTGTATGCAGTGACAGCCTGTGCAGTCCTACTGTGCGCGCTGGCGCTTGGACGTGACATGCAGGaggtatgacgatgggggctatggcagggggatggccagaatgagccagaatg Alignment from Spaln_aa2Genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGA-GTGACGTGCAGGAG atatgaacacactacttccagtcccctgataccttctctcccacgtgcagATGCGGAGGACACGCGAGTGCCCGGTGCACTCCTGTATGCAGTGACAGCCTGTGCAGTCCTACTGTGCGCGCTGGCGCTTGGAcGTGACATGCAGGAGgtatgacgatgggggctatggcagggggatggccagaatgagccagaatg Alignment from Spaln_nt2Genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGA-GTGACGTGCAGGAG atatgaacacactacttccagtcccctgataccttctctcccacgtgcagATGCGGAGGACACGCGAGTGCCCGGTGCACTCCTGTATGCAGTGACAGCCTGTGCAGTCCTACTGTGCGCGCTGGCGCTTGGACGTGACATGCAGGAGgtatgacgatgggggctatggcagggggatggccagaatgagccagaatg Alignment from Pairagon AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGA-GTGACGTGCAGGAG atatgaacacactacttccagtcccctgataccttctctcccacgtgcagATGCGGAGGACACGCGAGTGCCCGGTGCACTCCTGTATGCAGTGACAGCCTGTGCAGTCCTACTGTGCGCGCTGGCGCTTGGACGTGACATGCAGGAGgtatgacgatgggggctatggcagggggatggccagaatgagccagaatg Alignment from Exonerate_protein2genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGA-GTGACGTGCAGGAG atatgaacacactacttccagtcccctgataccttctctcccacgtgcagATGCGGAGGACACGCGAGTGCCCGGTGCACTCCTGTATGCAGTGACAGCCTGTGCAGTCCTACTGTGCGCGCTGGCGCTTGGACGTGACATGCAGGAGgtatgacgatgggggctatggcagggggatggccagaatgagccagaatg Alignment from Exonerate_coding2genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGA-GTGACGTGCAGGAG atatgaacacactacttccagtcccctgataccttctctcccacgtgcagATGCGGAGGACACGCGAGTGCCCGGTGCACTCCTGTATGCAGTGACAGCCTGTGCAGTCCTACTGTGCGCGCTGGCGCTTGGACGTGACATGCAGGAGgtatgacgatgggggctatggcagggggatggccagaatgagccagaatg Alignment from GeneWise AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAGGTTCGAG atatgaacacactacttccagtcccctgataccttctctcccacgtgcagATGCGGAGGACACGCGAGTGCCCGGTGCACTCCTGTATGCAGTGACAGCCTGTGCAGTCCTACTGTGCGCGCTGGCGCTTGGACGTGACATGCAG------GAGgtatgacgatgggggctatggcagggggatggccagaatgagccagaatg #### Csf2ra_ID13432_8 --> 0 - 1 Original Alignment GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACG-AGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCg gtttcatactttcagccccaccccctagctccttctctccgtccctgcagGTGCTTGTTGTGGAGGAGACCCGCCTCGCCTTCCCTAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAAGTGCGTGCGGGTGACACACAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTGggttggttgtggaggccccgcccattccccaggaaacctgccccctctgtc Alignment from CESAR GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACG-AGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCg gtttcatactttcagccccaccccctagctccttctctccgtccctgcagGTGCTTGTTGTGGAGGAGACCCGCCTCGCCTTCCCTAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAAGTGCGTGCGGGTGACACACAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTGggttggttgtggaggccccgcccattccccaggaaacctgccccctctgtc Alignment from Spaln_aa2Genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACG-AGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG gtttcatactttcagccccaccccctagctccttctctccgtccctgcagGTGCTTGTTGTGGAGGAGACCCGCCTCGCCTTCCCTAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAAGTGCGTGCGGGTGACACAcAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTGGgttggttgtggaggccccgcccattccccaggaaacctgccccctctgtc Alignment from Spaln_nt2Genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACG-AGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG gtttcatactttcagccccaccccctagctccttctctccgtccctgcagGTGCTTGTTGTGGAGGAGACCCGCCTCGCCTTCCCTAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAAGTGCGTGCGGGTGACACACAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTGGgttggttgtggaggccccgcccattccccaggaaacctgccccctctgtc Alignment from Pairagon GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACG-AGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG gtttcatactttcagccccaccccctagctccttctctccgtccctgcagGTGCTTGTTGTGGAGGAGACCCGCCTCGCCTTCCCTAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAAGTGCGTGCGGGTGACACACAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTGGgttggttgtggaggccccgcccattccccaggaaacctgccccctctgtc Alignment from Exonerate_protein2genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACG-AGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG gtttcatactttcagccccaccccctagctccttctctccgtccctgcagGTGCTTGTTGTGGAGGAGACCCGCCTCGCCTTCCCTAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAAGTGCGTGCGGGTGACACACAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTGGgttggttgtggaggccccgcccattccccaggaaacctgccccctctgtc Alignment from Exonerate_coding2genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACG-AGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG gtttcatactttcagccccaccccctagctccttctctccgtccctgcagGTGCTTGTTGTGGAGGAGACCCGCCTCGCCTTCCCTAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAAGTGCGTGCGGGTGACACACAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTGGgttggttgtggaggccccgcccattccccaggaaacctgccccctctgtc Alignment from GeneWise GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGAC-ACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG gtttcatactttcagccccaccccctagctccttctctccgtccctgcagGTGCTTGTTGTGGAGGAGACCCGCCTCGCCTTCCCTAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAAGTGCGTGCGGGTGACACACAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTGGgttggttgtggaggccccgcccattccccaggaaacctgccccctctgtc #### Csf2ra_ID13434_6 --> 2 - 0 Original Alignment agCGACTCGGTCCCCCACGTGACGTCACC-GCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG gaggtgggaattgtgggtgacagctctgggtcccctgctctttcccgcagagCGACTCGGTCCCCCACGTGATGTCACCCGCGTCCTGTAACTCTTCCCACTGCACCGTTTCGTGGGCCCCGCCCTCAACCTGGGCATCCCTGACAGCCCGGGACTTTCAGTTTGAGGTCCAGTGGCAAgtgagaagggcctctcctagttggcagggcccgagggggggtggaggcca Alignment from CESAR agCGACTCGGTCCCCCACGTGACGTCACC-GCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG gaggtgggaattgtgggtgacagctctgggtcccctgctctttcccgcagagCGACTCGGTCCCCCACGTGATGTCACCCGCGTCCTGTAACTCTTCCCACTGCACCGTTTCGTGGGCCCCGCCCTCAACCTGGGCATCCCTGACAGCCCGGGACTTTCAGTTTGAGGTCCAGTGGCAAgtgagaagggcctctcctagttggcagggcccgagggggggtggaggcca Alignment from Spaln_aa2Genome AGCGACTCGGTCCCCCACGTGACGTCACC-GCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG gaggtgggaattgtgggtgacagctctgggtcccctgctctttcccgcagAGCGACTCGGTCCCCCACGTGATGTCACCcGCGTCCTGTAACTCTTCCCACTGCACCGTTTCGTGGGCCCCGCCCTCAACCTGGGCATCCCTGACAGCCCGGGACTTTCAGTTTGAGGTCCAGTGGCAAgtgagaagggcctctcctagttggcagggcccgagggggggtggaggcca Alignment from Spaln_nt2Genome AGCGACTCGGTCCCCCACGTGACGTCACC-GCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG gaggtgggaattgtgggtgacagctctgggtcccctgctctttcccgcagAGCGACTCGGTCCCCCACGTGATGTCACCCGCGTCCTGTAACTCTTCCCACTGCACCGTTTCGTGGGCCCCGCCCTCAACCTGGGCATCCCTGACAGCCCGGGACTTTCAGTTTGAGGTCCAGTGGCAAgtgagaagggcctctcctagttggcagggcccgagggggggtggaggcca Alignment from Pairagon AGCGACTCGGTCCCCCACGTGACGTCA-CCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG gaggtgggaattgtgggtgacagctctgggtcccctgctctttcccgcagAGCGACTCGGTCCCCCACGTGATGTCACCCGCGTCCTGTAACTCTTCCCACTGCACCGTTTCGTGGGCCCCGCCCTCAACCTGGGCATCCCTGACAGCCCGGGACTTTCAGTTTGAGGTCCAGTGGCAAgtgagaagggcctctcctagttggcagggcccgagggggggtggaggcca Alignment from Exonerate_protein2genome AGCGACTCGGTCCCCCACGTGACGTCACC-GCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG gaggtgggaattgtgggtgacagctctgggtcccctgctctttcccgcagAGCGACTCGGTCCCCCACGTGATGTCACCCGCGTCCTGTAACTCTTCCCACTGCACCGTTTCGTGGGCCCCGCCCTCAACCTGGGCATCCCTGACAGCCCGGGACTTTCAGTTTGAGGTCCAGTGGCAAgtgagaagggcctctcctagttggcagggcccgagggggggtggaggcca Alignment from Exonerate_coding2genome AGCGACTCGGTCCCCCACGTGACGTCACC-GCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG gaggtgggaattgtgggtgacagctctgggtcccctgctctttcccgcagAGCGACTCGGTCCCCCACGTGATGTCACCCGCGTCCTGTAACTCTTCCCACTGCACCGTTTCGTGGGCCCCGCCCTCAACCTGGGCATCCCTGACAGCCCGGGACTTTCAGTTTGAGGTCCAGTGGCAAgtgagaagggcctctcctagttggcagggcccgagggggggtggaggcca Alignment from GeneWise AGCGACTCGGTCCCCCACGTGACGTCACC-GCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG gaggtgggaattgtgggtgacagctctgggtcccctgctctttcccgcagAGCGACTCGGTCCCCCACGTGATGTCACCCGCGTCCTGTAACTCTTCCCACTGCACCGTTTCGTGGGCCCCGCCCTCAACCTGGGCATCCCTGACAGCCCGGGACTTTCAGTTTGAGGTCCAGTGGCAAgtgagaagggcctctcctagttggcagggcccgagggggggtggaggcca #### Csf2ra_ID13437_3 --> 0 - 1 Original Alignment CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAAT-GGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAg gaccccaatgcactactcccctaccctcagatccctgatctgacttacagCCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCATGGTGTCACGCTGGATGTCAATCGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAggtaaggagggctgggggtgtttcagtgatgtcattgctcgcaaataccag Alignment from CESAR CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAAT-GGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAg gaccccaatgcactactcccctaccctcagatccctgatctgacttacagCCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCATGGTGTCACGCTGGATGTCAATCGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAggtaaggagggctgggggtgtttcagtgatgtcattgctcgcaaataccag Alignment from Spaln_aa2Genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAAT-GGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gaccccaatgcactactcccctaccctcagatccctgatctgacttacagCCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCATGGTGTCACGCTGGATGTCAATcGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAGgtaaggagggctgggggtgtttcagtgatgtcattgctcgcaaataccag Alignment from Spaln_nt2Genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAAT-GGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gaccccaatgcactactcccctaccctcagatccctgatctgacttacagCCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCATGGTGTCACGCTGGATGTCAATCGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAGgtaaggagggctgggggtgtttcagtgatgtcattgctcgcaaataccag Alignment from Pairagon CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAAT-GGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gaccccaatgcactactcccctaccctcagatccctgatctgacttacagCCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCATGGTGTCACGCTGGATGTCAATCGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAGgtaaggagggctgggggtgtttcagtgatgtcattgctcgcaaataccag Alignment from Exonerate_protein2genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAAT-GGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gaccccaatgcactactcccctaccctcagatccctgatctgacttacagCCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCATGGTGTCACGCTGGATGTCAATCGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAGgtaaggagggctgggggtgtttcagtgatgtcattgctcgcaaataccag Alignment from Exonerate_coding2genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAAT-GGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gaccccaatgcactactcccctaccctcagatccctgatctgacttacagCCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCATGGTGTCACGCTGGATGTCAATCGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAGgtaaggagggctgggggtgtttcagtgatgtcattgctcgcaaataccag Alignment from GeneWise CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAAT-GGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gaccccaatgcactactcccctaccctcagatccctgatctgacttacagCCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCATGGTGTCACGCTGGATGTCAATCGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAGgtaaggagggctgggggtgtttcagtgatgtcattgctcgcaaataccag #### Ctsf_ID675_3 --> 0 - 1 Original Alignment CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTG-CTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAg gggaccttgtttcaagctgtcccaagattcacattttgctttccttctagCTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAGGAACACTTGCCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAGGGTCACAggtaggtgattgctcaaggagactggaagagcccagaccatacctgagtca Alignment from CESAR CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTG-CTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAg gggaccttgtttcaagctgtcccaagattcacattttgctttccttctagCTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAGGAACACTTGCCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAGGGTCACAggtaggtgattgctcaaggagactggaagagcccagaccatacctgagtca Alignment from Spaln_aa2Genome CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTG-CTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG gggaccttgtttcaagctgtcccaagattcacattttgctttccttctagCTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAGGAACACTTGcCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAGGGTCACAGgtaggtgattgctcaaggagactggaagagcccagaccatacctgagtca Alignment from Spaln_nt2Genome CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTG-CTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG gggaccttgtttcaagctgtcccaagattcacattttgctttccttctagCTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAGGAACACTTGCCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAGGGTCACAGgtaggtgattgctcaaggagactggaagagcccagaccatacctgagtca Alignment from Pairagon CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTG-CTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG gggaccttgtttcaagctgtcccaagattcacattttgctttccttctagCTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAGGAACACTTGCCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAGGGTCACAGgtaggtgattgctcaaggagactggaagagcccagaccatacctgagtca Alignment from Exonerate_protein2genome CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTG-CTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG gggaccttgtttcaagctgtcccaagattcacattttgctttccttctagCTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAGGAACACTTGCCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAGGGTCACAGgtaggtgattgctcaaggagactggaagagcccagaccatacctgagtca Alignment from Exonerate_coding2genome CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTG-CTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG gggaccttgtttcaagctgtcccaagattcacattttgctttccttctagCTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAGGAACACTTGCCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAGGGTCACAGgtaggtgattgctcaaggagactggaagagcccagaccatacctgagtca Alignment from GeneWise CTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTG-CTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG gggaccttgtttcaagctgtcccaagattcacattttgctttccttctagCTCTGCAGTTTTGAAGTCCTGGAAGAGCTAAAGGAACACTTGCCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAGGGTCACAGgtaggtgattgctcaaggagactggaagagcccagaccatacctgagtca #### Ctsf_ID679_7 --> 2 - 0 Original Alignment agGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCT-GAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAGAACCAG gaggtctggcttcaaatactcatctctgacagtcccatgtttttctccagagGAGGAATTCCACACCATCTACCTGATTCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTCGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAGAACCAGgtaagtgtcccagaagtaggaataggaaggcagactgcacagggcctgaa Alignment from CESAR agGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCT-GAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAGAACCAG gaggtctggcttcaaatactcatctctgacagtcccatgtttttctccagagGAGGAATTCCACACCATCTACCTGATTCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTCGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAGAACCAGgtaagtgtcccagaagtaggaataggaaggcagactgcacagggcctgaa Alignment from Spaln_aa2Genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCT-GAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAGAACCAG gaggtctggcttcaaatactcatctctgacagtcccatgtttttctccagAGGAGGAATTCCACACCATCTACCTGATTCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTcGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAGAACCAGgtaagtgtcccagaagtaggaataggaaggcagactgcacagggcctgaa Alignment from Spaln_nt2Genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCT-GAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAGAACCAG gaggtctggcttcaaatactcatctctgacagtcccatgtttttctccagAGGAGGAATTCCACACCATCTACCTGATTCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTCGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAGAACCAGgtaagtgtcccagaagtaggaataggaaggcagactgcacagggcctgaa Alignment from Pairagon AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCT-GAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAGAACCAG gaggtctggcttcaaatactcatctctgacagtcccatgtttttctccagAGGAGGAATTCCACACCATCTACCTGATTCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTCGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAGAACCAGgtaagtgtcccagaagtaggaataggaaggcagactgcacagggcctgaa Alignment from Exonerate_protein2genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCT-GAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAGAACCAG gaggtctggcttcaaatactcatctctgacagtcccatgtttttctccagAGGAGGAATTCCACACCATCTACCTGATTCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTCGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAGAACCAGgtaagtgtcccagaagtaggaataggaaggcagactgcacagggcctgaa Alignment from Exonerate_coding2genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCT-GAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAGAACCAG gaggtctggcttcaaatactcatctctgacagtcccatgtttttctccagAGGAGGAATTCCACACCATCTACCTGATTCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTCGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAGAACCAGgtaagtgtcccagaagtaggaataggaaggcagactgcacagggcctgaa Alignment from GeneWise AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCT-GAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAGAACCAG gaggtctggcttcaaatactcatctctgacagtcccatgtttttctccagAGGAGGAATTCCACACCATCTACCTGATTCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTCGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAGAACCAGgtaagtgtcccagaagtaggaataggaaggcagactgcacagggcctgaa #### Ctsf_ID681_9 --> 2 - 1 Original Alignment agCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGA-TTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGg cagaccaaccccttcagagggtcccttgcattgaaaacttgtttccacagagCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGACTTGCCCTCCAATGCCTATGCAGCCATAAAGAATCTGggtgagagttaatctggtttggagaagcagcaggtaccacctctttgtagg Alignment from CESAR agCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGA-TTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGg cagaccaaccccttcagagggtcccttgcattgaaaacttgtttccacagagCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGACTTGCCCTCCAATGCCTATGCAGCCATAAAGAATCTGggtgagagttaatctggtttggagaagcagcaggtaccacctctttgtagg Alignment from Spaln_aa2Genome AGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGA-TTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagaccaaccccttcagagggtcccttgcattgaaaacttgtttccacagAGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGAcTTGCCCTCCAATGCCTATGCAGCCATAAAGAATCTGGgtgagagttaatctggtttggagaagcagcaggtaccacctctttgtagg Alignment from Spaln_nt2Genome AGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGA-TTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagaccaaccccttcagagggtcccttgcattgaaaacttgtttccacagAGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGACTTGCCCTCCAATGCCTATGCAGCCATAAAGAATCTGGgtgagagttaatctggtttggagaagcagcaggtaccacctctttgtagg Alignment from Pairagon AGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGA-TTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagaccaaccccttcagagggtcccttgcattgaaaacttgtttccacagAGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGACTTGCCCTCCAATGCCTATGCAGCCATAAAGAATCTGGgtgagagttaatctggtttggagaagcagcaggtaccacctctttgtagg Alignment from Exonerate_protein2genome AGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGA-TTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagaccaaccccttcagagggtcccttgcattgaaaacttgtttccacagAGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGACTTGCCCTCCAATGCCTATGCAGCCATAAAGAATCTGGgtgagagttaatctggtttggagaagcagcaggtaccacctctttgtagg Alignment from Exonerate_coding2genome AGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGA-TTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagaccaaccccttcagagggtcccttgcattgaaaacttgtttccacagAGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGACTTGCCCTCCAATGCCTATGCAGCCATAAAGAATCTGGgtgagagttaatctggtttggagaagcagcaggtaccacctctttgtagg Alignment from GeneWise AGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGA-TTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagaccaaccccttcagagggtcccttgcattgaaaacttgtttccacagAGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGACTTGCCCTCCAATGCCTATGCAGCCATAAAGAATCTGGgtgagagttaatctggtttggagaagcagcaggtaccacctctttgtagg #### Ctsf_ID684_12 --> 0 - 1 Original Alignment TTCTATCGCCACGGGATTGCTCACCCATTCCGG-CCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACc ccttcgtcccttctttttgacgctggccaacaaataatcttttgtttcagTTCTACCGTCATGGAATTGCTCACCCATTCCGGCCCCCTCTGCAGCCCTTGGTTCATCGACCATGCGGTGTTGCTAGTGGGCTATGGCAACcgtaagttctgttggcctcctgcttcccttccatctgcctcaggccccagt Alignment from CESAR TTCTATCGCCACGGGATTGCTCACCCATTCCGG-CCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACc ccttcgtcccttctttttgacgctggccaacaaataatcttttgtttcagTTCTACCGTCATGGAATTGCTCACCCATTCCGGCCCCCTCTGCAGCCCTTGGTTCATCGACCATGCGGTGTTGCTAGTGGGCTATGGCAACcgtaagttctgttggcctcctgcttcccttccatctgcctcaggccccagt Alignment from Spaln_aa2Genome TTCTATCGCCACGGGATTGCTCACCCATTCCGG-CCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC ccttcgtcccttctttttgacgctggccaacaaataatcttttgtttcagTTCTACCGTCATGGAATTGCTCACCCATTCCGGcCCCCTCTGCAGCCCTTGGTTCATCGACCATGCGGTGTTGCTAGTGGGCTATGGCAACCgtaagttctgttggcctcctgcttcccttccatctgcctcaggccccagt Alignment from Spaln_nt2Genome TTCTATCGCCACGGGATTGCTCACCCATTCCGG-CCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC ccttcgtcccttctttttgacgctggccaacaaataatcttttgtttcagTTCTACCGTCATGGAATTGCTCACCCATTCCGGCCCCCTCTGCAGCCCTTGGTTCATCGACCATGCGGTGTTGCTAGTGGGCTATGGCAACCgtaagttctgttggcctcctgcttcccttccatctgcctcaggccccagt Alignment from Pairagon TTCTATCGCCACGGGATTGCTCACCCATTCCGG-CCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC ccttcgtcccttctttttgacgctggccaacaaataatcttttgtttcagTTCTACCGTCATGGAATTGCTCACCCATTCCGGCCCCCTCTGCAGCCCTTGGTTCATCGACCATGCGGTGTTGCTAGTGGGCTATGGCAACCgtaagttctgttggcctcctgcttcccttccatctgcctcaggccccagt Alignment from Exonerate_protein2genome TTCTATCGCCACGGGATTGCTCACCCATTCCGG-CCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC ccttcgtcccttctttttgacgctggccaacaaataatcttttgtttcagTTCTACCGTCATGGAATTGCTCACCCATTCCGGCCCCCTCTGCAGCCCTTGGTTCATCGACCATGCGGTGTTGCTAGTGGGCTATGGCAACCgtaagttctgttggcctcctgcttcccttccatctgcctcaggccccagt Alignment from Exonerate_coding2genome TTCTATCGCCACGGGATTGCTCACCCATTCCGG-CCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC ccttcgtcccttctttttgacgctggccaacaaataatcttttgtttcagTTCTACCGTCATGGAATTGCTCACCCATTCCGGCCCCCTCTGCAGCCCTTGGTTCATCGACCATGCGGTGTTGCTAGTGGGCTATGGCAACCgtaagttctgttggcctcctgcttcccttccatctgcctcaggccccagt Alignment from GeneWise TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCC-CTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC ccttcgtcccttctttttgacgctggccaacaaataatcttttgtttcagTTCTACCGTCATGGAATTGCTCACCCATTCCGGCCCCCTCTGCAGCCCTTGGTTCATCGACCATGCGGTGTTGCTAGTGGGCTATGGCAACCgtaagttctgttggcctcctgcttcccttccatctgcctcaggccccagt #### Ctsw_ID1020_6 --> 2 - 1 Original Alignment agCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGC-TTCGTGTGGGACGCATATCTAACTGTCCTCAACAACa tgtgtcgggccaggggacctgctcacctaaagtcccaaatctgtccccagagCTGCTGGACTGTGAACGCTGTGGCAATGGTTGCAATGGTGGCCTTCGTGTGGGATGCATATCTAACTGTCCTCAACAACagtatgttactaggccttgtgggaggtgagtagggctagtgagtgttcagc Alignment from CESAR agCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGC-TTCGTGTGGGACGCATATCTAACTGTCCTCAACAACa tgtgtcgggccaggggacctgctcacctaaagtcccaaatctgtccccagagCTGCTGGACTGTGAACGCTGTGGCAATGGTTGCAATGGTGGCCTTCGTGTGGGATGCATATCTAACTGTCCTCAACAACagtatgttactaggccttgtgggaggtgagtagggctagtgagtgttcagc Alignment from Spaln_aa2Genome AGCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGC-TTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA tgtgtcgggccaggggacctgctcacctaaagtcccaaatctgtccccagAGCTGCTGGACTGTGAACGCTGTGGCAATGGTTGCAATGGTGGCcTTCGTGTGGGATGCATATCTAACTGTCCTCAACAACAgtatgttactaggccttgtgggaggtgagtagggctagtgagtgttcagc Alignment from Spaln_nt2Genome AGCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGG-CTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA tgtgtcgggccaggggacctgctcacctaaagtcccaaatctgtccccagAGCTGCTGGACTGTGAACGCTGTGGCAATGGTTGCAATGGTGGCCTTCGTGTGGGATGCATATCTAACTGTCCTCAACAACAgtatgttactaggccttgtgggaggtgagtagggctagtgagtgttcagc Alignment from Pairagon AGCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGG-CTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA tgtgtcgggccaggggacctgctcacctaaagtcccaaatctgtccccagAGCTGCTGGACTGTGAACGCTGTGGCAATGGTTGCAATGGTGGCCTTCGTGTGGGATGCATATCTAACTGTCCTCAACAACAgtatgttactaggccttgtgggaggtgagtagggctagtgagtgttcagc Alignment from Exonerate_protein2genome AGCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGC-TTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA tgtgtcgggccaggggacctgctcacctaaagtcccaaatctgtccccagAGCTGCTGGACTGTGAACGCTGTGGCAATGGTTGCAATGGTGGCCTTCGTGTGGGATGCATATCTAACTGTCCTCAACAACAgtatgttactaggccttgtgggaggtgagtagggctagtgagtgttcagc Alignment from Exonerate_coding2genome AGCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGTGGC-TTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA tgtgtcgggccaggggacctgctcacctaaagtcccaaatctgtccccagAGCTGCTGGACTGTGAACGCTGTGGCAATGGTTGCAATGGTGGCCTTCGTGTGGGATGCATATCTAACTGTCCTCAACAACAgtatgttactaggccttgtgggaggtgagtagggctagtgagtgttcagc Alignment from GeneWise -------------------------------------------------GAGCTGCTGGACTGCGAACGCTGTGGAAATGGTTGCAATGGT-GGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA TGTGTCGGGCCAGGGGACCTGCTCACCTAAAGTCCCAAATCTGTCCCCAGAGCTGCTGGACTGTGAACGCTGTGGCAATGGTTGCAATGGTGGCCTTCGTGTGGGATGCATATCTAACTGTCCTCAACAACAgtatgttactaggccttgtgggaggtgagtagggctagtgagtgttcagc #### Ctsw_ID1022_4 --> 2 - 0 Original Alignment agGAGGAGTTTGGCCAGTTATAC-GGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccctcaatgtccccttgatgcctgacacagctctctggtcgcagagGAGGAGTTTGGCCAGTTATACCGGGCAGGAGAGGTCACCAGAAAGGACCCCTAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCTCGAACCTGTGACTGGCGTGAAGCAAAGAACATCATCTCATCGGTTAAGAACCAGgtgagtgtcctgtccccacccagtttggcctaatccaacccaaggcatgg Alignment from CESAR agGAGGAGTTTGGCCAGTTATAC-GGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccctcaatgtccccttgatgcctgacacagctctctggtcgcagagGAGGAGTTTGGCCAGTTATACCGGGCAGGAGAGGTCACCAGAAAGGACCCCTAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCTCGAACCTGTGACTGGCGTGAAGCAAAGAACATCATCTCATCGGTTAAGAACCAGgtgagtgtcctgtccccacccagtttggcctaatccaacccaaggcatgg Alignment from Spaln_aa2Genome AGGAGGAGTTTGGCCAGTTATAC-GGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccctcaatgtccccttgatgcctgacacagctctctggtcgcagAGGAGGAGTTTGGCCAGTTATACcGGGCAGGAGAGGTCACCAGAAAGGACCCCTAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCTCGAACCTGTGACTGGCGTGAAGCAAAGAACATCATCTCATCGGTTAAGAACCAGgtgagtgtcctgtccccacccagtttggcctaatccaacccaaggcatgg Alignment from Spaln_nt2Genome AGGAGGAGTTTGGCCAGTTATA-CGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccctcaatgtccccttgatgcctgacacagctctctggtcgcagAGGAGGAGTTTGGCCAGTTATACCGGGCAGGAGAGGTCACCAGAAAGGACCCCTAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCTCGAACCTGTGACTGGCGTGAAGCAAAGAACATCATCTCATCGGTTAAGAACCAGgtgagtgtcctgtccccacccagtttggcctaatccaacccaaggcatgg Alignment from Pairagon AGGAGGAGTTTGGCCAGTTATA-CGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccctcaatgtccccttgatgcctgacacagctctctggtcgcagAGGAGGAGTTTGGCCAGTTATACCGGGCAGGAGAGGTCACCAGAAAGGACCCCTAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCTCGAACCTGTGACTGGCGTGAAGCAAAGAACATCATCTCATCGGTTAAGAACCAGgtgagtgtcctgtccccacccagtttggcctaatccaacccaaggcatgg Alignment from Exonerate_protein2genome AGGAGGAGTTTGGCCAGTTATAC-GGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccctcaatgtccccttgatgcctgacacagctctctggtcgcagAGGAGGAGTTTGGCCAGTTATACCGGGCAGGAGAGGTCACCAGAAAGGACCCCTAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCTCGAACCTGTGACTGGCGTGAAGCAAAGAACATCATCTCATCGGTTAAGAACCAGgtgagtgtcctgtccccacccagtttggcctaatccaacccaaggcatgg Alignment from Exonerate_coding2genome AGGAGGAGTTTGGCCAGTTATAC-GGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccctcaatgtccccttgatgcctgacacagctctctggtcgcagAGGAGGAGTTTGGCCAGTTATACCGGGCAGGAGAGGTCACCAGAAAGGACCCCTAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCTCGAACCTGTGACTGGCGTGAAGCAAAGAACATCATCTCATCGGTTAAGAACCAGgtgagtgtcctgtccccacccagtttggcctaatccaacccaaggcatgg Alignment from GeneWise GTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCGTCGGTCAAGAACCAG accactccctcaatgtccccttgatgcctgacacagctctctggtcgcagaggaggagtttggccagTTATACCGGGCAGGAGAGGTCACCAGAAAGGACCCCTAACATGACCAAAAAGGTAGAGTCTAACACGTGGGGGGAATCTGTGCCTCGAACCTGTGACTGGCGTGAAGCAAAGAACATCATCTCATCGGTTAAGAACCAGgtgagtgtcctgtccccacccagtttggcctaatccaacccaaggcatgg #### Cyp26a1_ID7414_2 --> 0 - 0 Original Alignment CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTG-ATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG ggcgccccctcatgcaggttgtgggcctaaaatgactttcttggaactagCGGAGGAAGTTTCTGCAGATGAAGCGCAGAAAATATGGCTTCATTTACAAGACACATCTGTTTGGGCGGCCCACAGTGCGGGTGCATGGGTGCAGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCTGCGTCAGTGCGCACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGCACGATTCCTCACACAAGCAGCAAAAGAAGgtgagtgtgagcaggcaaccccttggccggcagggagacttcatcctatg Alignment from CESAR CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTG-ATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG ggcgccccctcatgcaggttgtgggcctaaaatgactttcttggaactagCGGAGGAAGTTTCTGCAGATGAAGCGCAGAAAATATGGCTTCATTTACAAGACACATCTGTTTGGGCGGCCCACAGTGCGGGTGCATGGGTGCAGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCTGCGTCAGTGCGCACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGCACGATTCCTCACACAAGCAGCAAAAGAAGgtgagtgtgagcaggcaaccccttggccggcagggagacttcatcctatg Alignment from Spaln_aa2Genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGC-GCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG ggcgccccctcatgcaggttgtgggcctaaaatgactttcttggaactagCGGAGGAAGTTTCTGCAGATGAAGCGCAGAAAATATGGCTTCATTTACAAGACACATCTGTTTGGGCGGCCCACAGTGCGGGTGCATGGGtGCAGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCTGCGTCAGTGCGCACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGCACGATTCCTCACACAAGCAGCAAAAGAAGgtgagtgtgagcaggcaaccccttggccggcagggagacttcatcctatg Alignment from Spaln_nt2Genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTG-ATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG ggcgccccctcatgcaggttgtgggcctaaaatgactttcttggaactagCGGAGGAAGTTTCTGCAGATGAAGCGCAGAAAATATGGCTTCATTTACAAGACACATCTGTTTGGGCGGCCCACAGTGCGGGTGCATGGGTGCAGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCTGCGTCAGTGCGCACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGCACGATTCCTCACACAAGCAGCAAAAGAAGgtgagtgtgagcaggcaaccccttggccggcagggagacttcatcctatg Alignment from Pairagon CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTG-ATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG ggcgccccctcatgcaggttgtgggcctaaaatgactttcttggaactagCGGAGGAAGTTTCTGCAGATGAAGCGCAGAAAATATGGCTTCATTTACAAGACACATCTGTTTGGGCGGCCCACAGTGCGGGTGCATGGGTGCAGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCTGCGTCAGTGCGCACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGCACGATTCCTCACACAAGCAGCAAAAGAAGgtgagtgtgagcaggcaaccccttggccggcagggagacttcatcctatg Alignment from Exonerate_protein2genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTG-ATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG ggcgccccctcatgcaggttgtgggcctaaaatgactttcttggaactagCGGAGGAAGTTTCTGCAGATGAAGCGCAGAAAATATGGCTTCATTTACAAGACACATCTGTTTGGGCGGCCCACAGTGCGGGTGCATGGGTGCAGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCTGCGTCAGTGCGCACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGCACGATTCCTCACACAAGCAGCAAAAGAAGgtgagtgtgagcaggcaaccccttggccggcagggagacttcatcctatg Alignment from Exonerate_coding2genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTG-ATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG ggcgccccctcatgcaggttgtgggcctaaaatgactttcttggaactagCGGAGGAAGTTTCTGCAGATGAAGCGCAGAAAATATGGCTTCATTTACAAGACACATCTGTTTGGGCGGCCCACAGTGCGGGTGCATGGGTGCAGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCTGCGTCAGTGCGCACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGCACGATTCCTCACACAAGCAGCAAAAGAAGgtgagtgtgagcaggcaaccccttggccggcagggagacttcatcctatg Alignment from GeneWise CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGG-GTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG ggcgccccctcatgcaggttgtgggcctaaaatgactttcttggaactagCGGAGGAAGTTTCTGCAGATGAAGCGCAGAAAATATGGCTTCATTTACAAGACACATCTGTTTGGGCGGCCCACAGTGCGGGTGCATGGGTGCAGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCTGCGTCAGTGCGCACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGCACGATTCCTCACACAAGCAGCAAAAGAAGgtgagtgtgagcaggcaaccccttggccggcagggagacttcatcctatg #### Cyp2c50_ID7861_2 --> 0 - 1 Original Alignment TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGC-AGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg tgaaaatgcagttaaatcttcctaacatttcccccattccatttcgacagTTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCCAGGAAGCCTACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGGATGggtatgcatacatgtactgcatagtacgcctagtgagctaaagaatagata Alignment from CESAR TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGC-AGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg tgaaaatgcagttaaatcttcctaacatttcccccattccatttcgacagTTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCCAGGAAGCCTACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGGATGggtatgcatacatgtactgcatagtacgcctagtgagctaaagaatagata Alignment from Spaln_aa2Genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGC-AGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgaaaatgcagttaaatcttcctaacatttcccccattccatttcgacagTTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCcAGGAAGCCTACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGGATGGgtatgcatacatgtactgcatagtacgcctagtgagctaaagaatagata Alignment from Spaln_nt2Genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATA-TTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgaaaatgcagttaaatcttcctaacatttcccccattccatttcgacagTTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCCAGGAAGCCTACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGGATGGgtatgcatacatgtactgcatagtacgcctagtgagctaaagaatagata Alignment from Pairagon TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGG-CAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgaaaatgcagttaaatcttcctaacatttcccccattccatttcgacagTTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCCAGGAAGCCTACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGGATGGgtatgcatacatgtactgcatagtacgcctagtgagctaaagaatagata Alignment from Exonerate_protein2genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGC-AGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgaaaatgcagttaaatcttcctaacatttcccccattccatttcgacagTTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCCAGGAAGCCTACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGGATGGgtatgcatacatgtactgcatagtacgcctagtgagctaaagaatagata Alignment from Exonerate_coding2genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGC-AGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgaaaatgcagttaaatcttcctaacatttcccccattccatttcgacagTTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCCAGGAAGCCTACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGGATGGgtatgcatacatgtactgcatagtacgcctagtgagctaaagaatagata Alignment from GeneWise TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGC-AGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgaaaatgcagttaaatcttcctaacatttcccccattccatttcgacagTTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCCAGGAAGCCTACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGGATGGgtatgcatacatgtactgcatagtacgcctagtgagctaaagaatagata #### Cyp2c50_ID7862_3 --> 2 - 1 Original Alignment gcATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGC-ATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg ttgcttctactccaagatttactgtctactttccccgctttcccccacaggcATTATATTTAGTAAAGGAAATGTGTGGAAAAACACAAGGCGCTTCTCACTCACAACTCTGCGGAATTTAGGCCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTGGAGGAACTTCGGAAAACCAATggtaagggcaggtgtagactctgatctaggtgtgattttgttcctggccta Alignment from CESAR gcATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGC-ATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg ttgcttctactccaagatttactgtctactttccccgctttcccccacaggcATTATATTTAGTAAAGGAAATGTGTGGAAAAACACAAGGCGCTTCTCACTCACAACTCTGCGGAATTTAGGCCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTGGAGGAACTTCGGAAAACCAATggtaagggcaggtgtagactctgatctaggtgtgattttgttcctggccta Alignment from Spaln_aa2Genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGC-ATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttgcttctactccaagatttactgtctactttccccgctttcccccacagGCATTATATTTAGTAAAGGAAATGTGTGGAAAAACACAAGGCGCTTCTCACTCACAACTCTGCGGAATTTAGGCcATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTGGAGGAACTTCGGAAAACCAATGgtaagggcaggtgtagactctgatctaggtgtgattttgttcctggccta Alignment from Spaln_nt2Genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAA-TTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttgcttctactccaagatttactgtctactttccccgctttcccccacagGCATTATATTTAGTAAAGGAAATGTGTGGAAAAACACAAGGCGCTTCTCACTCACAACTCTGCGGAATTTAGGCCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTGGAGGAACTTCGGAAAACCAATGgtaagggcaggtgtagactctgatctaggtgtgattttgttcctggccta Alignment from Pairagon GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGG-CATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttgcttctactccaagatttactgtctactttccccgctttcccccacagGCATTATATTTAGTAAAGGAAATGTGTGGAAAAACACAAGGCGCTTCTCACTCACAACTCTGCGGAATTTAGGCCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTGGAGGAACTTCGGAAAACCAATGgtaagggcaggtgtagactctgatctaggtgtgattttgttcctggccta Alignment from Exonerate_protein2genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGC-ATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttgcttctactccaagatttactgtctactttccccgctttcccccacagGCATTATATTTAGTAAAGGAAATGTGTGGAAAAACACAAGGCGCTTCTCACTCACAACTCTGCGGAATTTAGGCCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTGGAGGAACTTCGGAAAACCAATGgtaagggcaggtgtagactctgatctaggtgtgattttgttcctggccta Alignment from Exonerate_coding2genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGC-ATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttgcttctactccaagatttactgtctactttccccgctttcccccacagGCATTATATTTAGTAAAGGAAATGTGTGGAAAAACACAAGGCGCTTCTCACTCACAACTCTGCGGAATTTAGGCCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTGGAGGAACTTCGGAAAACCAATGgtaagggcaggtgtagactctgatctaggtgtgattttgttcctggccta Alignment from GeneWise GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGC-ATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttgcttctactccaagatttactgtctactttccccgctttcccccacagGCATTATATTTAGTAAAGGAAATGTGTGGAAAAACACAAGGCGCTTCTCACTCACAACTCTGCGGAATTTAGGCCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTGGAGGAACTTCGGAAAACCAATGgtaagggcaggtgtagactctgatctaggtgtgattttgttcctggccta #### D19Ertd737e_ID13191_3 --> 2 - 2 Original Alignment gcAAATTGAAGAATGAA-AAGGAATCTCACag ttgaaataacagcagcataattaagtattacctttaatatgccccctcaggcAAATTGAAGAATGAACAAGGAATCTCACaggtgaggatatgtaaaaatagtttctattcagcagtgttgtgggattttct Alignment from CESAR gcAAATTGAAGAATGAA-AAGGAATCTCACag ttgaaataacagcagcataattaagtattacctttaatatgccccctcaggcAAATTGAAGAATGAACAAGGAATCTCACaggtgaggatatgtaaaaatagtttctattcagcagtgttgtgggattttct Alignment from Spaln_aa2Genome GCAAATTGAAGAATGAA-AAGGAATCTCACAG ttgaaataacagcagcataattaagtattacctttaatatgccccctcagGCAAATTGAAGAATGAAcAAGGAATCTCACAGgtgaggatatgtaaaaatagtttctattcagcagtgttgtgggattttct Alignment from Spaln_nt2Genome GCAAATTGAAGAATGAA-AAGGAATCTCACAG ttgaaataacagcagcataattaagtattacctttaatatgccccctcagGCAAATTGAAGAATGAACAAGGAATCTCACAGgtgaggatatgtaaaaatagtttctattcagcagtgttgtgggattttct Alignment from Pairagon GCAAATTGAAGAATGAA-AAGGAATCTCACAG ttgaaataacagcagcataattaagtattacctttaatatgccccctcagGCAAATTGAAGAATGAACAAGGAATCTCACAGgtgaggatatgtaaaaatagtttctattcagcagtgttgtgggattttct Alignment from Exonerate_protein2genome GCAAATTGAAGAATGAA-AAGGAATCTCACAG ttgaaataacagcagcataattaagtattacctttaatatgccccctcagGCAAATTGAAGAATGAACAAGGAATCTCACAGgtgaggatatgtaaaaatagtttctattcagcagtgttgtgggattttct Alignment from Exonerate_coding2genome ttgaaataacagcagcataattaagtattacctttaatatgccccctcaggcaaattgaagaatgaacaaggaatctcacaggtgaggatatgtaaaaatagtttctattcagcagtgttgtgggattttct Alignment from GeneWise ttgaaataacagcagcataattaagtattacctttaatatgccccctcaggcaaattgaagaatgaacaaggaatctcacaggtgaggatatgtaaaaatagtttctattcagcagtgttgtgggattttct #### Dagla_ID2760_10 --> 0 - 0 Original Alignment GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAA-GTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG aatctggcctcagtctggggtcactccgatgtttaaatttttattcatagGTCTATGAGACTCCCTTTTACGTAGCTGTGGACCATGATAAGAAGAAACGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAGgtaagtgcacatgtgtctactccacaggctccagtacttgctgcccttgt Alignment from CESAR GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAA-GTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG aatctggcctcagtctggggtcactccgatgtttaaatttttattcatagGTCTATGAGACTCCCTTTTACGTAGCTGTGGACCATGATAAGAAGAAACGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAGgtaagtgcacatgtgtctactccacaggctccagtacttgctgcccttgt Alignment from Spaln_aa2Genome GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAA-GTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG aatctggcctcagtctggggtcactccgatgtttaaatttttattcatagGTCTATGAGACTCCCTTTTACGTAGCTGTGGACCATGATAAGAAGAAAcGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAGgtaagtgcacatgtgtctactccacaggctccagtacttgctgcccttgt Alignment from Spaln_nt2Genome GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAG-AAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG aatctggcctcagtctggggtcactccgatgtttaaatttttattcatagGTCTATGAGACTCCCTTTTACGTAGCTGTGGACCATGATAAGAAGAAACGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAGgtaagtgcacatgtgtctactccacaggctccagtacttgctgcccttgt Alignment from Pairagon GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAA-GTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG aatctggcctcagtctggggtcactccgatgtttaaatttttattcatagGTCTATGAGACTCCCTTTTACGTAGCTGTGGACCATGATAAGAAGAAACGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAGgtaagtgcacatgtgtctactccacaggctccagtacttgctgcccttgt Alignment from Exonerate_protein2genome GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAA-GTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG aatctggcctcagtctggggtcactccgatgtttaaatttttattcatagGTCTATGAGACTCCCTTTTACGTAGCTGTGGACCATGATAAGAAGAAACGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAGgtaagtgcacatgtgtctactccacaggctccagtacttgctgcccttgt Alignment from Exonerate_coding2genome GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGT---GGTGATCAGTATCCGGGGAACACTGTCCCCCAAG aatctggcctcagtctggggtcactccgatgtttaaatttttattcatagGTCTATGAGACTCCCTTTTACGTAGCTGTGGACCATGATAAGAAGAAA--CGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAGgtaagtgcacatgtgtctactccacaggctccagtacttgctgcccttgt Alignment from GeneWise ---TATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAA-GTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG aatctggcctcagtctggggtcactccgatgtttaaatttttattcatagGTCTATGAGACTCCCTTTTACGTAGCTGTGGACCATGATAAGAAGAAACGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAGgtaagtgcacatgtgtctactccacaggctccagtacttgctgcccttgt #### Dagla_ID2767_4 --> 2 - 2 Original Alignment gaATGGTCGTCTGCAACTGGGTGGTCATTCTCAGCGTCTGCATCACTGTCCTCTGCGTCTTTGACCCCACGGGCCGCACCTTCGTC-AAGCTGAGAGCCACCAAGAGGAGGCAGCGCAATCTGCGGACTTACAACCTGcg tgggaaggtgaacccaacaccagttttttgtatgctcattttcattgcaggaATGGTCGTCTGCAACTGGGTGGTCATTCTCAGTGTCTGCATCTCTGTCCTCTGTGTCTTTGACCCCACAGGCCGCACCTTCATCCAAGCTGAGAGCCACCAAGAGAAGACAGCGCAATCTTCGGACTTACAACCTGcggtaaaatgactgggtgggctggcaggcagggatgggggggggggcaggag Alignment from CESAR gaATGGTCGTCTGCAACTGGGTGGTCATTCTCAGCGTCTGCATCACTGTCCTCTGCGTCTTTGACCCCACGGGCCGCACCTTCGTC-AAGCTGAGAGCCACCAAGAGGAGGCAGCGCAATCTGCGGACTTACAACCTGcg tgggaaggtgaacccaacaccagttttttgtatgctcattttcattgcaggaATGGTCGTCTGCAACTGGGTGGTCATTCTCAGTGTCTGCATCTCTGTCCTCTGTGTCTTTGACCCCACAGGCCGCACCTTCATCCAAGCTGAGAGCCACCAAGAGAAGACAGCGCAATCTTCGGACTTACAACCTGcggtaaaatgactgggtgggctggcaggcagggatgggggggggggcaggag Alignment from Spaln_aa2Genome GAATGGTCGTCTGCAACTGGGTGGTCATTCTCAGCGTCTGCATCACTGTCCTCTGCGTCTTTGACCCCACGGGCCGCACCTTCGTC-AAGCTGAGAGCCACCAAGAGGAGGCAGCGCAATCTGCGGACTTACAACCTGCG tgggaaggtgaacccaacaccagttttttgtatgctcattttcattgcagGAATGGTCGTCTGCAACTGGGTGGTCATTCTCAGTGTCTGCATCTCTGTCCTCTGTGTCTTTGACCCCACAGGCCGCACCTTCATCcAAGCTGAGAGCCACCAAGAGAAGACAGCGCAATCTTCGGACTTACAACCTGCGgtaaaatgactgggtgggctggcaggcagggatgggggggggggcaggag Alignment from Spaln_nt2Genome GAATGGTCGTCTGCAACTGGGTGGTCATTCTCAGCGTCTGCATCACTGTCCTCTGCGTCTTTGACCCCACGGGCCGCACCTTCGTC-AAGCTGAGAGCCACCAAGAGGAGGCAGCGCAATCTGCGGACTTACAACCTGCG tgggaaggtgaacccaacaccagttttttgtatgctcattttcattgcagGAATGGTCGTCTGCAACTGGGTGGTCATTCTCAGTGTCTGCATCTCTGTCCTCTGTGTCTTTGACCCCACAGGCCGCACCTTCATCCAAGCTGAGAGCCACCAAGAGAAGACAGCGCAATCTTCGGACTTACAACCTGCGgtaaaatgactgggtgggctggcaggcagggatgggggggggggcaggag Alignment from Pairagon GAATGGTCGTCTGCAACTGGGTGGTCATTCTCAGCGTCTGCATCACTGTCCTCTGCGTCTTTGACCCCACGGGCCGCACCTTCGT-CAAGCTGAGAGCCACCAAGAGGAGGCAGCGCAATCTGCGGACTTACAACCTGCG tgggaaggtgaacccaacaccagttttttgtatgctcattttcattgcagGAATGGTCGTCTGCAACTGGGTGGTCATTCTCAGTGTCTGCATCTCTGTCCTCTGTGTCTTTGACCCCACAGGCCGCACCTTCATCCAAGCTGAGAGCCACCAAGAGAAGACAGCGCAATCTTCGGACTTACAACCTGCGgtaaaatgactgggtgggctggcaggcagggatgggggggggggcaggag Alignment from Exonerate_protein2genome GAATGGTCGTCTGCAACTGGGTGGTCATTCTCAGCGTCTGCATCACTGTCCTCTGCGTCTTTGACCCCACGGGCCGCACCTTCGTC-AAGCTGAGAGCCACCAAGAGGAGGCAGCGCAATCTGCGGACTTACAACCTGCG tgggaaggtgaacccaacaccagttttttgtatgctcattttcattgcagGAATGGTCGTCTGCAACTGGGTGGTCATTCTCAGTGTCTGCATCTCTGTCCTCTGTGTCTTTGACCCCACAGGCCGCACCTTCATCCAAGCTGAGAGCCACCAAGAGAAGACAGCGCAATCTTCGGACTTACAACCTGCGgtaaaatgactgggtgggctggcaggcagggatgggggggggggcaggag Alignment from Exonerate_coding2genome GAATGGTCGTCTGCAACTGGGTGGTCATTCTCAGCGTCTGCATCACTGTCCTCTGCGTCTTTGACCCCACGGGCCGCACCTTCGTC-AAGCTGAGAGCCACCAAGAGGAGGCAGCGCAATCTGCGGACTTACAACCTGCG tgggaaggtgaacccaacaccagttttttgtatgctcattttcattgcagGAATGGTCGTCTGCAACTGGGTGGTCATTCTCAGTGTCTGCATCTCTGTCCTCTGTGTCTTTGACCCCACAGGCCGCACCTTCATCCAAGCTGAGAGCCACCAAGAGAAGACAGCGCAATCTTCGGACTTACAACCTGCGgtaaaatgactgggtgggctggcaggcagggatgggggggggggcaggag Alignment from GeneWise GAATGGTCGTCTGCAACTGGGTGGTCATTCTCAGCGTCTGCATCACTGTCCTCTGCGTCTTTGACCCCACGGGCCGCACCTTC-GTCAAGCTGAGAGCCACCAAGAGGAGGCAGCGCAATCTGCGGACTTACAACCTGCG tgggaaggtgaacccaacaccagttttttgtatgctcattttcattgcagGAATGGTCGTCTGCAACTGGGTGGTCATTCTCAGTGTCTGCATCTCTGTCCTCTGTGTCTTTGACCCCACAGGCCGCACCTTCATCCAAGCTGAGAGCCACCAAGAGAAGACAGCGCAATCTTCGGACTTACAACCTGCGgtaaaatgactgggtgggctggcaggcagggatgggggggggggcaggag #### Dak_ID2897_16 --> 0 - 0 Original Alignment CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCA-GTCCTGACTAAAGCAGTCAAG aggctcccctaagtatcagggcttgacttcaagtctccttctctatgcagCTGGACTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGGCCAGCCTTCTCCCACGTCCTGACTAAAGCAGTCAAGgtacttacactcggctgtacaatcaaggagccactaagctcccatctccg Alignment from CESAR CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCA-GTCCTGACTAAAGCAGTCAAG aggctcccctaagtatcagggcttgacttcaagtctccttctctatgcagCTGGACTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGGCCAGCCTTCTCCCACGTCCTGACTAAAGCAGTCAAGgtacttacactcggctgtacaatcaaggagccactaagctcccatctccg Alignment from Spaln_aa2Genome CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCA-GTCCTGACTAAAGCAGTCAAG aggctcccctaagtatcagggcttgacttcaagtctccttctctatgcagCTGGACTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGGCCAGCCTTCTCCCAcGTCCTGACTAAAGCAGTCAAGgtacttacactcggctgtacaatcaaggagccactaagctcccatctccg Alignment from Spaln_nt2Genome CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCA-GTCCTGACTAAAGCAGTCAAG aggctcccctaagtatcagggcttgacttcaagtctccttctctatgcagCTGGACTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGGCCAGCCTTCTCCCACGTCCTGACTAAAGCAGTCAAGgtacttacactcggctgtacaatcaaggagccactaagctcccatctccg Alignment from Pairagon CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCA-GTCCTGACTAAAGCAGTCAAG aggctcccctaagtatcagggcttgacttcaagtctccttctctatgcagCTGGACTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGGCCAGCCTTCTCCCACGTCCTGACTAAAGCAGTCAAGgtacttacactcggctgtacaatcaaggagccactaagctcccatctccg Alignment from Exonerate_protein2genome CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCA-GTCCTGACTAAAGCAGTCAAG aggctcccctaagtatcagggcttgacttcaagtctccttctctatgcagCTGGACTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGGCCAGCCTTCTCCCACGTCCTGACTAAAGCAGTCAAGgtacttacactcggctgtacaatcaaggagccactaagctcccatctccg Alignment from Exonerate_coding2genome CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGT-CCTGACTAAAGCAGTCAAG aggctcccctaagtatcagggcttgacttcaagtctccttctctatgcagCTGGACTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGGCCAGCCTTCTCCCACGTCCTGACTAAAGCAGTCAAGgtacttacactcggctgtacaatcaaggagccactaagctcccatctccg Alignment from GeneWise CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCA-GTCCTGACTAAAGCAGTCAAG aggctcccctaagtatcagggcttgacttcaagtctccttctctatgcagCTGGACTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGGCCAGCCTTCTCCCACGTCCTGACTAAAGCAGTCAAGgtacttacactcggctgtacaatcaaggagccactaagctcccatctccg #### Dak_ID2901_12 --> 2 - 1 Original Alignment gtGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGG-GATTGTGGTTCTACCCATAGCCGTGCTGCCAAAg ccttggcacccatacttcctactgcttgttcagtgcaatatatattttaggtGTAACATCAAAGCAGATGGCACTGGTGTTGGATCGGATATGCACCACCCTCATCGGAGTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGCGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAggtacccttccttggggcacatggccttggggcacatgggccaatttggca Alignment from CESAR gtGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGG-GATTGTGGTTCTACCCATAGCCGTGCTGCCAAAg ccttggcacccatacttcctactgcttgttcagtgcaatatatattttaggtGTAACATCAAAGCAGATGGCACTGGTGTTGGATCGGATATGCACCACCCTCATCGGAGTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGCGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAggtacccttccttggggcacatggccttggggcacatgggccaatttggca Alignment from Spaln_aa2Genome GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGG-GATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG ccttggcacccatacttcctactgcttgttcagtgcaatatatattttagGTGTAACATCAAAGCAGATGGCACTGGTGTTGGATCGGATATGCACCACCCTCATCGGAGTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGcGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAGgtacccttccttggggcacatggccttggggcacatgggccaatttggca Alignment from Spaln_nt2Genome GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGAT-GGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG ccttggcacccatacttcctactgcttgttcagtgcaatatatattttagGTGTAACATCAAAGCAGATGGCACTGGTGTTGGATCGGATATGCACCACCCTCATCGGAGTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGCGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAGgtacccttccttggggcacatggccttggggcacatgggccaatttggca Alignment from Pairagon GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGG-GATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG ccttggcacccatacttcctactgcttgttcagtgcaatatatattttagGTGTAACATCAAAGCAGATGGCACTGGTGTTGGATCGGATATGCACCACCCTCATCGGAGTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGCGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAGgtacccttccttggggcacatggccttggggcacatgggccaatttggca Alignment from Exonerate_protein2genome GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGAT-GGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG ccttggcacccatacttcctactgcttgttcagtgcaatatatattttagGTGTAACATCAAAGCAGATGGCACTGGTGTTGGATCGGATATGCACCACCCTCATCGGAGTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGCGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAGgtacccttccttggggcacatggccttggggcacatgggccaatttggca Alignment from Exonerate_coding2genome GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGA-TTGTGGTTCTACCCATAGCCGTGCTGCCAAAG ccttggcacccatacttcctactgcttgttcagtgcaatatatattttagGTGTAACATCAAAGCAGATGGCACTGGTGTTGGATCGGATATGCACCACCCTCATCGGAGTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGCGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAGgtacccttccttggggcacatggccttggggcacatgggccaatttggca Alignment from GeneWise GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGAT-GGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG ccttggcacccatacttcctactgcttgttcagtgcaatatatattttagGTGTAACATCAAAGCAGATGGCACTGGTGTTGGATCGGATATGCACCACCCTCATCGGAGTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGCGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAGgtacccttccttggggcacatggccttggggcacatgggccaatttggca #### Dak_ID2902_11 --> 2 - 1 Original Alignment atGCTGAAACTACTGCAAAAGCCTGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCC-ACTGCAGCAGGAg gtctaggcctcaattgaccttgtctggagtgattctgattctttttacagatGCTGAAACTACTGCAAAAGCCTGGCCT---ATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCCACTGCAGCAGGAggtacctggtcctactgaggaagaagggaaatcatccttggtggttgaaac Alignment from CESAR atGCTGAAACTACTGCAAAAGCCTGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCC-ACTGCAGCAGGAg gtctaggcctcaattgaccttgtctggagtgattctgattctttttacagatGCTGAAACTACTGCAAAAGCCTGGCCT---ATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCCACTGCAGCAGGAggtacctggtcctactgaggaagaagggaaatcatccttggtggttgaaac Alignment from Spaln_aa2Genome ATGCTGAAACTACTGCAAAAGCCTGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCA- gtctaggcctcaattgaccttgtctggagtgattctgattctttttacagATGCTGAAACTACTGCAAAAGCCTGGCCT---ATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCCACTGCAgcaggaggtacctggtcctactgaggaagaagggaaatcatccttggtggttgaaac Alignment from Spaln_nt2Genome ATGCTGAAACTACTGCAAAAGCCTGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCC-ACTGCAGCAGGAG gtctaggcctcaattgaccttgtctggagtgattctgattctttttacagATGCTGAAACTACTGCAAAAGCCTGGCCT---ATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCCACTGCAGCAGGAGgtacctggtcctactgaggaagaagggaaatcatccttggtggttgaaac Alignment from Pairagon ATGCTGAAACTACTGCAAAAGCCTGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAG-CCACTGCAGCAGGAG gtctaggcctcaattgaccttgtctggagtgattctgattctttttacagATGCTGAAACTACTGCAAAAGCCTGGCCT---ATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCCACTGCAGCAGGAGgtacctggtcctactgaggaagaagggaaatcatccttggtggttgaaac Alignment from Exonerate_protein2genome ATGCTGAAACTACTGCAAAAGCCTGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCC-ACTGCAGCAGGAG gtctaggcctcaattgaccttgtctggagtgattctgattctttttacagATGCTGAAACTACTGCAAAAGCCTGGCCT---ATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCCACTGCAGCAGGAGgtacctggtcctactgaggaagaagggaaatcatccttggtggttgaaac Alignment from Exonerate_coding2genome ATGCTGAAACTACTGCAAAAGCCTGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGC-CACTGCAGCAGGAG gtctaggcctcaattgaccttgtctggagtgattctgattctttttacagATGCTGAAACTACTGCAAAAGCCTGGCC---TATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCCACTGCAGCAGGAGgtacctggtcctactgaggaagaagggaaatcatccttggtggttgaaac Alignment from GeneWise ATGCTGAAACTACTGCAAAAGCCTGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAA-GCCACTGCAGCAGGAG gtctaggcctcaattgaccttgtctggagtgattctgattctttttacagATGCTGAAACTACTGCAAAAGCCTGGCCT---ATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCCACTGCAGCAGGAGgtacctggtcctactgaggaagaagggaaatcatccttggtggttgaaac #### Dak_ID2905_8 --> 0 - 1 Original Alignment ATAGCACCTGTTGATCAGATTGTCACTCTTATGCTTGACCACATGACA-AACACCTCCAATATATTTCATGTGCCTGTACGGTCAg tggatagagaataaagtcccagacatgcggtgctgctgctctgatttcagATAGCACCTGTTGATCAGATTGTCACTCTTATGCTTGACCACATGACACAACACCTCCAATATATTTCATGTGCCTGTACGGTCAggtgagtaacctgttgttcccattctccaaggcctttcttgcccccttgca Alignment from CESAR ATAGCACCTGTTGATCAGATTGTCACTCTTATGCTTGACCACATGACA-AACACCTCCAATATATTTCATGTGCCTGTACGGTCAg tggatagagaataaagtcccagacatgcggtgctgctgctctgatttcagATAGCACCTGTTGATCAGATTGTCACTCTTATGCTTGACCACATGACACAACACCTCCAATATATTTCATGTGCCTGTACGGTCAggtgagtaacctgttgttcccattctccaaggcctttcttgcccccttgca Alignment from Spaln_aa2Genome ATAGCACCTGTTGATCAGATTGTCACTCTTATGCTTGACCACATGACA-AACACCTCCAATATATTTCATGTGCCTGTACGGTCAG tggatagagaataaagtcccagacatgcggtgctgctgctctgatttcagATAGCACCTGTTGATCAGATTGTCACTCTTATGCTTGACCACATGACAcAACACCTCCAATATATTTCATGTGCCTGTACGGTCAGgtgagtaacctgttgttcccattctccaaggcctttcttgcccccttgca Alignment from Spaln_nt2Genome ATAGCACCTGTTGATCAGATTGTCACTCTTATGCTTGACCACATGACA-AACACCTCCAATATATTTCATGTGCCTGTACGGTCAG tggatagagaataaagtcccagacatgcggtgctgctgctctgatttcagATAGCACCTGTTGATCAGATTGTCACTCTTATGCTTGACCACATGACACAACACCTCCAATATATTTCATGTGCCTGTACGGTCAGgtgagtaacctgttgttcccattctccaaggcctttcttgcccccttgca Alignment from Pairagon ATAGCACCTGTTGATCAGATTGTCACTCTTATGCTTGACCACATGACA-AACACCTCCAATATATTTCATGTGCCTGTACGGTCAG tggatagagaataaagtcccagacatgcggtgctgctgctctgatttcagATAGCACCTGTTGATCAGATTGTCACTCTTATGCTTGACCACATGACACAACACCTCCAATATATTTCATGTGCCTGTACGGTCAGgtgagtaacctgttgttcccattctccaaggcctttcttgcccccttgca Alignment from Exonerate_protein2genome ATAGCACCTGTTGATCAGATTGTCACTCTTATGCTTGACCACATGACA-AACACCTCCAATATATTTCATGTGCCTGTACGGTCAG tggatagagaataaagtcccagacatgcggtgctgctgctctgatttcagATAGCACCTGTTGATCAGATTGTCACTCTTATGCTTGACCACATGACACAACACCTCCAATATATTTCATGTGCCTGTACGGTCAGgtgagtaacctgttgttcccattctccaaggcctttcttgcccccttgca Alignment from Exonerate_coding2genome ATAGCACCTGTTGATCAGATTGTCACTCTTATGCTTGACCACATGAC-AAACACCTCCAATATATTTCATGTGCCTGTACGGTCAG tggatagagaataaagtcccagacatgcggtgctgctgctctgatttcagATAGCACCTGTTGATCAGATTGTCACTCTTATGCTTGACCACATGACACAACACCTCCAATATATTTCATGTGCCTGTACGGTCAGgtgagtaacctgttgttcccattctccaaggcctttcttgcccccttgca Alignment from GeneWise ATAGCACCTGTTGATCAGATTGTCACTCTTATGCTTGACCACATG-ACAAACACCTCCAATATATTTCATGTGCCTGTACGGTCAG tggatagagaataaagtcccagacatgcggtgctgctgctctgatttcagATAGCACCTGTTGATCAGATTGTCACTCTTATGCTTGACCACATGACACAACACCTCCAATATATTTCATGTGCCTGTACGGTCAGgtgagtaacctgttgttcccattctccaaggcctttcttgcccccttgca #### Dak_ID2906_7 --> 2 - 0 Original Alignment ggATCCATGGGGAAGCTGGTGTT-CGTCGGATAAAG tggaaagaccaggctgtgaggcagccaggacctctctcccttcctcacagggATCCATGGGGAAGCTGGTGTTCCGTCGGATAAAGgtaagaagactccctgatgagccttgcctagccctgagcgcaccactttt Alignment from CESAR ggATCCATGGGGAAGCTGGTGTT-CGTCGGATAAAG tggaaagaccaggctgtgaggcagccaggacctctctcccttcctcacagggATCCATGGGGAAGCTGGTGTTCCGTCGGATAAAGgtaagaagactccctgatgagccttgcctagccctgagcgcaccactttt Alignment from Spaln_aa2Genome GGATCCATGGGGAAGCTGGTGTTCGTCGGATAAAG- tggaaagaccaggctgtgaggcagccaggacctctctcccttcctcacagGGATCCATGGGGAAGCTGGTGTTCCGTCGGATAAAGgtaagaagactccctgatgagccttgcctagccctgagcgcaccactttt Alignment from Spaln_nt2Genome GGATCCATGGGGAAGCTGGTGTTC-GTCGGATAAAG tggaaagaccaggctgtgaggcagccaggacctctctcccttcctcacagGGATCCATGGGGAAGCTGGTGTTCCGTCGGATAAAGgtaagaagactccctgatgagccttgcctagccctgagcgcaccactttt Alignment from Pairagon GGATCCATGGGGAAGCTGGTGTT-CGTCGGATAAAG tggaaagaccaggctgtgaggcagccaggacctctctcccttcctcacagGGATCCATGGGGAAGCTGGTGTTCCGTCGGATAAAGgtaagaagactccctgatgagccttgcctagccctgagcgcaccactttt Alignment from Exonerate_protein2genome GGATCCATGGGGAAGCTGGTGTT-CGTCGGATAAAG tggaaagaccaggctgtgaggcagccaggacctctctcccttcctcacagGGATCCATGGGGAAGCTGGTGTTCCGTCGGATAAAGgtaagaagactccctgatgagccttgcctagccctgagcgcaccactttt Alignment from Exonerate_coding2genome GGATCCATGGGGAAGCTGGTGTTCG-TCGGATAAAG tggaaagaccaggctgtgaggcagccaggacctctctcccttcctcacagGGATCCATGGGGAAGCTGGTGTTCCGTCGGATAAAGgtaagaagactccctgatgagccttgcctagccctgagcgcaccactttt Alignment from GeneWise tggaaagaccaggctgtgaggcagccaggacctctctcccttcctcacagggatccatggggaagctggtgttccgtcggataaaggtaagaagactccctgatgagccttgcctagccctgagcgcaccactttt #### Dak_ID2907_6 --> 2 - 1 Original Alignment gtACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAA-ATAGAGCTAGGCCTGg ctgccaccaccaacagaattaccatctccatgttttcaaatttcttgcaggtACCCTAGGCGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAACATAGAGCTAGGCCTGggtacggctgcagtcaccatgcccctgctgtgactgttttggctgcctcag Alignment from CESAR gtACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAA-ATAGAGCTAGGCCTGg ctgccaccaccaacagaattaccatctccatgttttcaaatttcttgcaggtACCCTAGGCGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAACATAGAGCTAGGCCTGggtacggctgcagtcaccatgcccctgctgtgactgttttggctgcctcag Alignment from Spaln_aa2Genome GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAA-ATAGAGCTAGGCCTGG ctgccaccaccaacagaattaccatctccatgttttcaaatttcttgcagGTACCCTAGGCGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAcATAGAGCTAGGCCTGGgtacggctgcagtcaccatgcccctgctgtgactgttttggctgcctcag Alignment from Spaln_nt2Genome GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAA-ATAGAGCTAGGCCTGG ctgccaccaccaacagaattaccatctccatgttttcaaatttcttgcagGTACCCTAGGCGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAACATAGAGCTAGGCCTGGgtacggctgcagtcaccatgcccctgctgtgactgttttggctgcctcag Alignment from Pairagon GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAA-ATAGAGCTAGGCCTGG ctgccaccaccaacagaattaccatctccatgttttcaaatttcttgcagGTACCCTAGGCGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAACATAGAGCTAGGCCTGGgtacggctgcagtcaccatgcccctgctgtgactgttttggctgcctcag Alignment from Exonerate_protein2genome GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAA-ATAGAGCTAGGCCTGG ctgccaccaccaacagaattaccatctccatgttttcaaatttcttgcagGTACCCTAGGCGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAACATAGAGCTAGGCCTGGgtacggctgcagtcaccatgcccctgctgtgactgttttggctgcctcag Alignment from Exonerate_coding2genome GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGA-AATAGAGCTAGGCCTGG ctgccaccaccaacagaattaccatctccatgttttcaaatttcttgcagGTACCCTAGGCGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAACATAGAGCTAGGCCTGGgtacggctgcagtcaccatgcccctgctgtgactgttttggctgcctcag Alignment from GeneWise GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGGGGATCCATGGGGAAGCTGGTGTTCGTCGGATAAAG ctgccaccaccaacagaattaccatctccatgttttcaaatttcttgcagGTACCCTAGGCGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAACATAGAGCTAGGCCTGGGTACGGCTGCAGTCACCATGCCCCTGCTGTGACTgttttggctgcctcag #### Ddb1_ID2929_14 --> 1 - 1 Original Alignment cCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCC-TTTGAACTACTACACAAGGAGATGCTGGGTGGAg cttgggtccctgggtttcttcctctgctttctgactactcttggtcacagcCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCCTTTGAACTATTACACAAGGAGATGCTGGGTGGAggtaggcctattagtactttaggttaaaactccagtgaggatgacattcct Alignment from CESAR cCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCC-TTTGAACTACTACACAAGGAGATGCTGGGTGGAg cttgggtccctgggtttcttcctctgctttctgactactcttggtcacagcCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCCTTTGAACTATTACACAAGGAGATGCTGGGTGGAggtaggcctattagtactttaggttaaaactccagtgaggatactcctttt Alignment from Spaln_aa2Genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCC-TTTGAACTACTACACAAGGAGATGCTGGGTGGAG cttgggtccctgggtttcttcctctgctttctgactactcttggtcacagCCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCcTTTGAACTATTACACAAGGAGATGCTGGGTGGAGgtaggcctattagtactttaggttaaaactccagtgaggatgacattcct Alignment from Spaln_nt2Genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATC-CTTTGAACTACTACACAAGGAGATGCTGGGTGGAG cttgggtccctgggtttcttcctctgctttctgactactcttggtcacagCCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCCTTTGAACTATTACACAAGGAGATGCTGGGTGGAGgtaggcctattagtactttaggttaaaactccagtgaggatgacattcct Alignment from Pairagon CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCAT-CCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG cttgggtccctgggtttcttcctctgctttctgactactcttggtcacagCCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCCTTTGAACTATTACACAAGGAGATGCTGGGTGGAGgtaggcctattagtactttaggttaaaactccagtgaggatgacattcct Alignment from Exonerate_protein2genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCC-TTTGAACTACTACACAAGGAGATGCTGGGTGGAG cttgggtccctgggtttcttcctctgctttctgactactcttggtcacagCCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCCTTTGAACTATTACACAAGGAGATGCTGGGTGGAGgtaggcctattagtactttaggttaaaactccagtgaggatgacattcct Alignment from Exonerate_coding2genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCC-TTTGAACTACTACACAAGGAGATGCTGGGTGGAG cttgggtccctgggtttcttcctctgctttctgactactcttggtcacagCCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCCTTTGAACTATTACACAAGGAGATGCTGGGTGGAGgtaggcctattagtactttaggttaaaactccagtgaggatgacattcct Alignment from GeneWise CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCA-TCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG cttgggtccctgggtttcttcctctgctttctgactactcttggtcacagCCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCCTTTGAACTATTACACAAGGAGATGCTGGGTGGAGgtaggcctattagtactttaggttaaaactccagtgaggatgacattcct #### Ddb1_ID2930_15 --> 2 - 1 Original Alignment agATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTT-GGGCTCAACATCGAGACAg tactttaggttaaaactccagtgaggatactccttttgggtctctcctagagATCATTCCTCGATCCATACTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTCCGGGCTCAATATCGAGACAggtatgtaaaaacattgagtgtgggttctttcagaaatagggagtcttggt Alignment from CESAR agATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTT-GGGCTCAACATCGAGACAg tactttaggttaaaactccagtgaggatactccttttgggtctctcctagagATCATTCCTCGATCCATACTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTCCGGGCTCAATATCGAGACAggtatgtaaaaacattgagtgtgggttctttcagaaatagggagtcttggt Alignment from Spaln_aa2Genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTT-GGGCTCAACATCGAGACAG tactttaggttaaaactccagtgaggatactccttttgggtctctcctagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTCcGGGCTCAATATCGAGACAGgtatgtaaaaacattgagtgtgggttctttcagaaatagggagtcttggt Alignment from Spaln_nt2Genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTT-GGGCTCAACATCGAGACAG tactttaggttaaaactccagtgaggatactccttttgggtctctcctagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTCCGGGCTCAATATCGAGACAGgtatgtaaaaacattgagtgtgggttctttcagaaatagggagtcttggt Alignment from Pairagon AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTT-TGGGCTCAACATCGAGACAG tactttaggttaaaactccagtgaggatactccttttgggtctctcctagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTCCGGGCTCAATATCGAGACAGgtatgtaaaaacattgagtgtgggttctttcagaaatagggagtcttggt Alignment from Exonerate_protein2genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTT-GGGCTCAACATCGAGACAG tactttaggttaaaactccagtgaggatactccttttgggtctctcctagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTCCGGGCTCAATATCGAGACAGgtatgtaaaaacattgagtgtgggttctttcagaaatagggagtcttggt Alignment from Exonerate_coding2genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTT-GGGCTCAACATCGAGACAG tactttaggttaaaactccagtgaggatactccttttgggtctctcctagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTCCGGGCTCAATATCGAGACAGgtatgtaaaaacattgagtgtgggttctttcagaaatagggagtcttggt Alignment from GeneWise AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTT-GGGCTCAACATCGAGACAG tactttaggttaaaactccagtgaggatactccttttgggtctctcctagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTCCGGGCTCAATATCGAGACAGgtatgtaaaaacattgagtgtgggttctttcagaaatagggagtcttggt #### Ddb1_ID2932_17 --> 1 - 2 Original Alignment tCTGGCATTGGCCAATAACAGCACTCTC-ACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCag tatccctcattgttaacttactcaatactcttcaaaattctctatttcagtCTGGCATTGGCCAATAACAGCACTCTCCACAATTGGTACCATTGATGAGATCCAGAAGCTCCACATTCGCACAGTTCCCCTCTACGAGTCTCCCaggtgagtccagagctgagaagcagcagagggagttggttggtaatgtctta Alignment from CESAR tCTGGCATTGGCCAATAACAGCACTCTC-ACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCag tatccctcattgttaacttactcaatactcttcaaaattctctatttcagtCTGGCATTGGCCAATAACAGCACTCTCCACAATTGGTACCATTGATGAGATCCAGAAGCTCCACATTCGCACAGTTCCCCTCTACGAGTCTCCCaggtgagtccagagctgagaagcagcagagggagttggttggtaatgtctta Alignment from Spaln_aa2Genome TCTGGCATTGGCCAATAACAGCACTCTC-ACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tatccctcattgttaacttactcaatactcttcaaaattctctatttcagTCTGGCATTGGCCAATAACAGCACTCTCcACAATTGGTACCATTGATGAGATCCAGAAGCTCCACATTCGCACAGTTCCCCTCTACGAGTCTCCCAGgtgagtccagagctgagaagcagcagagggagttggttggtaatgtctta Alignment from Spaln_nt2Genome TCTGGCATTGGCCAATAACAGCACTCT-CACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tatccctcattgttaacttactcaatactcttcaaaattctctatttcagTCTGGCATTGGCCAATAACAGCACTCTCCACAATTGGTACCATTGATGAGATCCAGAAGCTCCACATTCGCACAGTTCCCCTCTACGAGTCTCCCAGgtgagtccagagctgagaagcagcagagggagttggttggtaatgtctta Alignment from Pairagon TCTGGCATTGGCCAATAACAGCACTCT-CACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tatccctcattgttaacttactcaatactcttcaaaattctctatttcagTCTGGCATTGGCCAATAACAGCACTCTCCACAATTGGTACCATTGATGAGATCCAGAAGCTCCACATTCGCACAGTTCCCCTCTACGAGTCTCCCAGgtgagtccagagctgagaagcagcagagggagttggttggtaatgtctta Alignment from Exonerate_protein2genome TCTGGCATTGGCCAATAACAGCACTCTC-ACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tatccctcattgttaacttactcaatactcttcaaaattctctatttcagTCTGGCATTGGCCAATAACAGCACTCTCCACAATTGGTACCATTGATGAGATCCAGAAGCTCCACATTCGCACAGTTCCCCTCTACGAGTCTCCCAGgtgagtccagagctgagaagcagcagagggagttggttggtaatgtctta Alignment from Exonerate_coding2genome TCTGGCATTGGCCAATAACAGCACTCTC-ACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tatccctcattgttaacttactcaatactcttcaaaattctctatttcagTCTGGCATTGGCCAATAACAGCACTCTCCACAATTGGTACCATTGATGAGATCCAGAAGCTCCACATTCGCACAGTTCCCCTCTACGAGTCTCCCAGgtgagtccagagctgagaagcagcagagggagttggttggtaatgtctta Alignment from GeneWise TCTGGCATTGGCCAATAACAGCACT-CTCACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tatccctcattgttaacttactcaatactcttcaaaattctctatttcagTCTGGCATTGGCCAATAACAGCACTCTCCACAATTGGTACCATTGATGAGATCCAGAAGCTCCACATTCGCACAGTTCCCCTCTACGAGTCTCCCAGgtgagtccagagctgagaagcagcagagggagttggttggtaatgtctta #### Ddb1_ID2938_23 --> 0 - 2 Original Alignment ATTGCCCGAGACTTTAATCCCAACTGGATGAGTGCAGTGGAGATCTTGGATGATGACAATTTTCTGGGAGCTGAAAATGCCTTT-AACTTGTTTGTGTGTCAGAAGGACag caaactggcttccatgctgcagactacattgacatctgtctgtcttgcagATTGCCCGAGACTTTAATCCCAACTGGATGAGTGCAGTGGAGATCTTGGATGATGACAATTTTCTGGGAGCTGAAAATGCCTTTCAACTTGTTTGTGTGTCAGAAGGACaggtcggtagcttgtacagctctaaatctagggcaaggcctctaggtctgtg Alignment from CESAR ATTGCCCGAGACTTTAATCCCAACTGGATGAGTGCAGTGGAGATCTTGGATGATGACAATTTTCTGGGAGCTGAAAATGCCTTT-AACTTGTTTGTGTGTCAGAAGGACag caaactggcttccatgctgcagactacattgacatctgtctgtcttgcagATTGCCCGAGACTTTAATCCCAACTGGATGAGTGCAGTGGAGATCTTGGATGATGACAATTTTCTGGGAGCTGAAAATGCCTTTCAACTTGTTTGTGTGTCAGAAGGACaggtcggtagcttgtacagctctaaatctagggcaaggcctctaggtctgtg Alignment from Spaln_aa2Genome ATTGCCCGAGACTTTAATCCCAACTGGATGAGTGCAGTGGAGATCTTGGATGATGACAATTTTCTGGGAGCTGAAAATGCC-TTTAACTTGTTTGTGTGTCAGAAGGACAG caaactggcttccatgctgcagactacattgacatctgtctgtcttgcagATTGCCCGAGACTTTAATCCCAACTGGATGAGTGCAGTGGAGATCTTGGATGATGACAATTTTCTGGGAGCTGAAAATGCCtTTCAACTTGTTTGTGTGTCAGAAGGACAGgtcggtagcttgtacagctctaaatctagggcaaggcctctaggtctgtg Alignment from Spaln_nt2Genome ATTGCCCGAGACTTTAATCCCAACTGGATGAGTGCAGTGGAGATCTTGGATGATGACAATTTTCTGGGAGCTGAAAATGCCTTT-AACTTGTTTGTGTGTCAGAAGGACAG caaactggcttccatgctgcagactacattgacatctgtctgtcttgcagATTGCCCGAGACTTTAATCCCAACTGGATGAGTGCAGTGGAGATCTTGGATGATGACAATTTTCTGGGAGCTGAAAATGCCTTTCAACTTGTTTGTGTGTCAGAAGGACAGgtcggtagcttgtacagctctaaatctagggcaaggcctctaggtctgtg Alignment from Pairagon ATTGCCCGAGACTTTAATCCCAACTGGATGAGTGCAGTGGAGATCTTGGATGATGACAATTTTCTGGGAGCTGAAAATGCCTTT-AACTTGTTTGTGTGTCAGAAGGACAG caaactggcttccatgctgcagactacattgacatctgtctgtcttgcagATTGCCCGAGACTTTAATCCCAACTGGATGAGTGCAGTGGAGATCTTGGATGATGACAATTTTCTGGGAGCTGAAAATGCCTTTCAACTTGTTTGTGTGTCAGAAGGACAGgtcggtagcttgtacagctctaaatctagggcaaggcctctaggtctgtg Alignment from Exonerate_protein2genome ATTGCCCGAGACTTTAATCCCAACTGGATGAGTGCAGTGGAGATCTTGGATGATGACAATTTTCTGGGAGCTGAAAATGCC-TTTAACTTGTTTGTGTGTCAGAAGGACAG caaactggcttccatgctgcagactacattgacatctgtctgtcttgcagATTGCCCGAGACTTTAATCCCAACTGGATGAGTGCAGTGGAGATCTTGGATGATGACAATTTTCTGGGAGCTGAAAATGCCTTTCAACTTGTTTGTGTGTCAGAAGGACAGgtcggtagcttgtacagctctaaatctagggcaaggcctctaggtctgtg Alignment from Exonerate_coding2genome ATTGCCCGAGACTTTAATCCCAACTGGATGAGTGCAGTGGAGATCTTGGATGATGACAATTTTCTGGGAGCTGAAAATGCC-TTTAACTTGTTTGTGTGTCAGAAGGACAG caaactggcttccatgctgcagactacattgacatctgtctgtcttgcagATTGCCCGAGACTTTAATCCCAACTGGATGAGTGCAGTGGAGATCTTGGATGATGACAATTTTCTGGGAGCTGAAAATGCCTTTCAACTTGTTTGTGTGTCAGAAGGACAGgtcggtagcttgtacagctctaaatctagggcaaggcctctaggtctgtg Alignment from GeneWise ATTGCCCGAGACTTTAATCCCAACTGGATGAGTGCAGTGGAGATCTTGGATGATGACAATTTTCTGGGAGCTGAAAAT-GCCTTTAACTTGTTTGTGTGTCAGAAGGACAG caaactggcttccatgctgcagactacattgacatctgtctgtcttgcagATTGCCCGAGACTTTAATCCCAACTGGATGAGTGCAGTGGAGATCTTGGATGATGACAATTTTCTGGGAGCTGAAAATGCCTTTCAACTTGTTTGTGTGTCAGAAGGACAGgtcggtagcttgtacagctctaaatctagggcaaggcctctaggtctgtg #### Dkk1_ID6482_3 --> 2 - 1 Original Alignment gaATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAAC-CTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAg acttctcctgtcatggctattagcagcactcaatgccattgtttccctaggaATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCACCATTGAAAACCCTTGGTAATGACCACAATGCCGCTGCGGGGGATGGATATCCCAGAAGAACCACACTGGCTTCAAAGATATATCACACCAAAggcatgtaaggggcttgcaggctcagcctttcacatttaatatatgaaaag Alignment from CESAR gaATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAAC-CTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAg acttctcctgtcatggctattagcagcactcaatgccattgtttccctaggaATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCACCATTGAAAACCCTTGGTAATGACCACAATGCCGCTGCGGGGGATGGATATCCCAGAAGAACCACACTGGCTTCAAAGATATATCACACCAAAggcatgtaaggggcttgcaggctcagcctttcacatttaatatatgaaaag Alignment from Spaln_aa2Genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAAC-CTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG acttctcctgtcatggctattagcagcactcaatgccattgtttccctagGAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCACCATTGAAAACcCTTGGTAATGACCACAATGCCGCTGCGGGGGATGGATATCCCAGAAGAACCACACTGGCTTCAAAGATATATCACACCAAAGgcatgtaaggggcttgcaggctcagcctttcacatttaatatatgaaaag Alignment from Spaln_nt2Genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTG-AAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG acttctcctgtcatggctattagcagcactcaatgccattgtttccctagGAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCACCATTGAAAACCCTTGGTAATGACCACAATGCCGCTGCGGGGGATGGATATCCCAGAAGAACCACACTGGCTTCAAAGATATATCACACCAAAGgcatgtaaggggcttgcaggctcagcctttcacatttaatatatgaaaag Alignment from Pairagon GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAA-CCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG acttctcctgtcatggctattagcagcactcaatgccattgtttccctagGAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCACCATTGAAAACCCTTGGTAATGACCACAATGCCGCTGCGGGGGATGGATATCCCAGAAGAACCACACTGGCTTCAAAGATATATCACACCAAAGgcatgtaaggggcttgcaggctcagcctttcacatttaatatatgaaaag Alignment from Exonerate_protein2genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAAC-CTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG acttctcctgtcatggctattagcagcactcaatgccattgtttccctagGAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCACCATTGAAAACCCTTGGTAATGACCACAATGCCGCTGCGGGGGATGGATATCCCAGAAGAACCACACTGGCTTCAAAGATATATCACACCAAAGgcatgtaaggggcttgcaggctcagcctttcacatttaatatatgaaaag Alignment from Exonerate_coding2genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAAC-CTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG acttctcctgtcatggctattagcagcactcaatgccattgtttccctagGAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCACCATTGAAAACCCTTGGTAATGACCACAATGCCGCTGCGGGGGATGGATATCCCAGAAGAACCACACTGGCTTCAAAGATATATCACACCAAAGgcatgtaaggggcttgcaggctcagcctttcacatttaatatatgaaaag Alignment from GeneWise GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAAC-CTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAGGA-- acttctcctgtcatggctattagcagcactcaatgccattgtttccctagGAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCACCATTGAAAACCCTTGGTAATGACCACAATGCCGCTGCGGGGGATGGATATCCCAGAAGAACCACACTGGCTTCAAAGATATATCACACCAAAGGCATgtaaggggcttgcaggctcagcctttcacatttaatatatgaaaag #### Dpf2_ID1305_8 --> 2 - 1 Original Alignment ccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGG-CAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAg ttccagggtttccttgagaatcatcagagcttgtcttcatctttatttagccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCCAGCCCGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAggtgtgtccatcctcaaagagcagattgtactccatgtctaggaacctcct Alignment from CESAR ccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGG-CAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAg ttccagggtttccttgagaatcatcagagcttgtcttcatctttatttagccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCCAGCCCGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAggtgtgtccatcctcaaagagcagattgtactccatgtctaggaacctcct Alignment from Spaln_aa2Genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACA-GGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG ttccagggtttccttgagaatcatcagagcttgtcttcatctttatttagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAgGGCCAGCCCGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtgtgtccatcctcaaagagcagattgtactccatgtctaggaacctcct Alignment from Spaln_nt2Genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACA-GGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG ttccagggtttccttgagaatcatcagagcttgtcttcatctttatttagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCCAGCCCGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtgtgtccatcctcaaagagcagattgtactccatgtctaggaacctcct Alignment from Pairagon CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGG-CAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG ttccagggtttccttgagaatcatcagagcttgtcttcatctttatttagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCCAGCCCGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtgtgtccatcctcaaagagcagattgtactccatgtctaggaacctcct Alignment from Exonerate_protein2genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACA-GGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG ttccagggtttccttgagaatcatcagagcttgtcttcatctttatttagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCCAGCCCGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtgtgtccatcctcaaagagcagattgtactccatgtctaggaacctcct Alignment from Exonerate_coding2genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACA-GGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG ttccagggtttccttgagaatcatcagagcttgtcttcatctttatttagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCCAGCCCGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtgtgtccatcctcaaagagcagattgtactccatgtctaggaacctcct Alignment from GeneWise CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAG-ACAGGGCAGCCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG ttccagggtttccttgagaatcatcagagcttgtcttcatctttatttagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCCAGCCCGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtgtgtccatcctcaaagagcagattgtactccatgtctaggaacctcct #### Dpp3_ID740_13 --> 0 - 2 Original Alignment ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGT-CTCAACCCCCAAGTGCTGga tgggggacacagccaggccctgattcttttctaagtttgtatccttgcagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGAGCTGAGAGTGTGGGCCTCTACCTCTGTCCTCAACCCCCAAGTGTTGgagtgagtaaccatgggccggagggacggtgggctgagcccccacactgagc Alignment from CESAR ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGT-CTCAACCCCCAAGTGCTGga tgggggacacagccaggccctgattcttttctaagtttgtatccttgcagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGAGCTGAGAGTGTGGGCCTCTACCTCTGTCCTCAACCCCCAAGTGTTGgagtgagtaaccatgggccggagggacggtgggctgagcccccacactgagc Alignment from Spaln_aa2Genome ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGT-CTCAACCCCCAAGTGCTGGA tgggggacacagccaggccctgattcttttctaagtttgtatccttgcagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGAGCTGAGAGTGTGGGCCTCTACCTCTGTcCTCAACCCCCAAGTGTTGGAgtgagtaaccatgggccggagggacggtgggctgagcccccacactgagc Alignment from Spaln_nt2Genome ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTC-TCAACCCCCAAGTGCTGGA tgggggacacagccaggccctgattcttttctaagtttgtatccttgcagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGAGCTGAGAGTGTGGGCCTCTACCTCTGTCCTCAACCCCCAAGTGTTGGAgtgagtaaccatgggccggagggacggtgggctgagcccccacactgagc Alignment from Pairagon ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGT-CTCAACCCCCAAGTGCTGGA tgggggacacagccaggccctgattcttttctaagtttgtatccttgcagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGAGCTGAGAGTGTGGGCCTCTACCTCTGTCCTCAACCCCCAAGTGTTGGAgtgagtaaccatgggccggagggacggtgggctgagcccccacactgagc Alignment from Exonerate_protein2genome ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGT-CTCAACCCCCAAGTGCTGGA tgggggacacagccaggccctgattcttttctaagtttgtatccttgcagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGAGCTGAGAGTGTGGGCCTCTACCTCTGTCCTCAACCCCCAAGTGTTGGAgtgagtaaccatgggccggagggacggtgggctgagcccccacactgagc Alignment from Exonerate_coding2genome ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGT-CTCAACCCCCAAGTGCTGGA tgggggacacagccaggccctgattcttttctaagtttgtatccttgcagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGAGCTGAGAGTGTGGGCCTCTACCTCTGTCCTCAACCCCCAAGTGTTGGAgtgagtaaccatgggccggagggacggtgggctgagcccccacactgagc Alignment from GeneWise ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTG tgggggacacagccaggccctgattcttttctaagtttgtatccttgcagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGAGCTGAGAGTGTGGGCCTCTACCTCTGTCCTCAACCCCCAAGTgttggagtgagtaaccatgggccggagggacggtgggctgagcccccacactgagc #### Dpp3_ID743_10 --> 2 - 0 Original Alignment acGATGACCTGAGACAGACAGAAGGCTTTAAG-AATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tctcaacctctgcccttccctctgtcagctctaaacttattttctttcagacGATGACCTGAGACAGACAGAAGGCTTTAAGCAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAGgtaagggctggctcccgagcccagggctaagctactttagtctggaaagg Alignment from CESAR acGATGACCTGAGACAGACAGAAGGCTTTAAG-AATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tctcaacctctgcccttccctctgtcagctctaaacttattttctttcagacGATGACCTGAGACAGACAGAAGGCTTTAAGCAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAGgtaagggctggctcccgagcccagggctaagctactttagtctggaaagg Alignment from Spaln_aa2Genome ACGATGACCTGAGACAGACAGAAGGCTTTAAG-AATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tctcaacctctgcccttccctctgtcagctctaaacttattttctttcagACGATGACCTGAGACAGACAGAAGGCTTTAAGcAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAGgtaagggctggctcccgagcccagggctaagctactttagtctggaaagg Alignment from Spaln_nt2Genome ACGATGACCTGAGACAGACAGAAGGCTTTAAG-AATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tctcaacctctgcccttccctctgtcagctctaaacttattttctttcagACGATGACCTGAGACAGACAGAAGGCTTTAAGCAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAGgtaagggctggctcccgagcccagggctaagctactttagtctggaaagg Alignment from Pairagon ACGATGACCTGAGACAGACAGAAGGCTTTAAG-AATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tctcaacctctgcccttccctctgtcagctctaaacttattttctttcagACGATGACCTGAGACAGACAGAAGGCTTTAAGCAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAGgtaagggctggctcccgagcccagggctaagctactttagtctggaaagg Alignment from Exonerate_protein2genome ACGATGACCTGAGACAGACAGAAGGCTTTAAG-AATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tctcaacctctgcccttccctctgtcagctctaaacttattttctttcagACGATGACCTGAGACAGACAGAAGGCTTTAAGCAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAGgtaagggctggctcccgagcccagggctaagctactttagtctggaaagg Alignment from Exonerate_coding2genome ACGATGACCTGAGACAGACAGAAGGCTTTAAG-AATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tctcaacctctgcccttccctctgtcagctctaaacttattttctttcagACGATGACCTGAGACAGACAGAAGGCTTTAAGCAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAGgtaagggctggctcccgagcccagggctaagctactttagtctggaaagg Alignment from GeneWise ACGATGACCTGAGACAGACAGAAGGCTTT-AAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tctcaacctctgcccttccctctgtcagctctaaacttattttctttcagACGATGACCTGAGACAGACAGAAGGCTTTAAGCAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAGgtaagggctggctcccgagcccagggctaagctactttagtctggaaagg #### Dpp3_ID744_9 --> 2 - 1 Original Alignment gcTTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATT-CCTGCGGGCATCAACATCCCCAACt atgtaactgtatcccaggatgctggcaacccctcccctcgttctttaaaggcTTTGTGGCCATGGTAAATAAAGCCATGAGTGCCAAGTTTGAGCGGCTGGTTGCGAGTGCTGAGCAGTTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGATAAGTTCCTCACCCCTGACTTCACCTCCCTAGATGTCCTCACCTTTGCTGGCTCTGGCATTCCCTGCAGGCATCAACATCCCCAACtgtcagtccctcccctcagccttctctcagtgcatctcaacctctgccctt Alignment from CESAR gcTTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATT-CCTGCGGGCATCAACATCCCCAACt atgtaactgtatcccaggatgctggcaacccctcccctcgttctttaaaggcTTTGTGGCCATGGTAAATAAAGCCATGAGTGCCAAGTTTGAGCGGCTGGTTGCGAGTGCTGAGCAGTTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGATAAGTTCCTCACCCCTGACTTCACCTCCCTAGATGTCCTCACCTTTGCTGGCTCTGGCATTCCCTGCAGGCATCAACATCCCCAACtgtcagtccctcccctcagccttctctcagtgcatctcaacctctgccctt Alignment from Spaln_aa2Genome GCTTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATTCCT-GCGGGCATCAACATCCCCAACT atgtaactgtatcccaggatgctggcaacccctcccctcgttctttaaagGCTTTGTGGCCATGGTAAATAAAGCCATGAGTGCCAAGTTTGAGCGGCTGGTTGCGAGTGCTGAGCAGTTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGATAAGTTCCTCACCCCTGACTTCACCTCCCTAGATGTCCTCACCTTTGCTGGCTCTGGCATTCCCtGCAGGCATCAACATCCCCAACTgtcagtccctcccctcagccttctctcagtgcatctcaacctctgccctt Alignment from Spaln_nt2Genome GCTTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATTC-CTGCGGGCATCAACATCCCCAACT atgtaactgtatcccaggatgctggcaacccctcccctcgttctttaaagGCTTTGTGGCCATGGTAAATAAAGCCATGAGTGCCAAGTTTGAGCGGCTGGTTGCGAGTGCTGAGCAGTTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGATAAGTTCCTCACCCCTGACTTCACCTCCCTAGATGTCCTCACCTTTGCTGGCTCTGGCATTCCCTGCAGGCATCAACATCCCCAACTgtcagtccctcccctcagccttctctcagtgcatctcaacctctgccctt Alignment from Pairagon GCTTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATT-CCTGCGGGCATCAACATCCCCAACT atgtaactgtatcccaggatgctggcaacccctcccctcgttctttaaagGCTTTGTGGCCATGGTAAATAAAGCCATGAGTGCCAAGTTTGAGCGGCTGGTTGCGAGTGCTGAGCAGTTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGATAAGTTCCTCACCCCTGACTTCACCTCCCTAGATGTCCTCACCTTTGCTGGCTCTGGCATTCCCTGCAGGCATCAACATCCCCAACTgtcagtccctcccctcagccttctctcagtgcatctcaacctctgccctt Alignment from Exonerate_protein2genome GCTTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATT-CCTGCGGGCATCAACATCCCCAACT atgtaactgtatcccaggatgctggcaacccctcccctcgttctttaaagGCTTTGTGGCCATGGTAAATAAAGCCATGAGTGCCAAGTTTGAGCGGCTGGTTGCGAGTGCTGAGCAGTTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGATAAGTTCCTCACCCCTGACTTCACCTCCCTAGATGTCCTCACCTTTGCTGGCTCTGGCATTCCCTGCAGGCATCAACATCCCCAACTgtcagtccctcccctcagccttctctcagtgcatctcaacctctgccctt Alignment from Exonerate_coding2genome GCTTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATT-CCTGCGGGCATCAACATCCCCAACT atgtaactgtatcccaggatgctggcaacccctcccctcgttctttaaagGCTTTGTGGCCATGGTAAATAAAGCCATGAGTGCCAAGTTTGAGCGGCTGGTTGCGAGTGCTGAGCAGTTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGATAAGTTCCTCACCCCTGACTTCACCTCCCTAGATGTCCTCACCTTTGCTGGCTCTGGCATTCCCTGCAGGCATCAACATCCCCAACTgtcagtccctcccctcagccttctctcagtgcatctcaacctctgccctt Alignment from GeneWise GCTTCGTGGCCATGGTAAACAAAGCCATGAGTGCCAAGTTCGAGCGGCTGGTCGCGAGTGCTGAGCAGCTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGACAAGTTCCTCACCCCTGACTTCACCTCCCTGGACGTCCTCACCTTTGCTGGCTCTGGCATTCCTGCG---------------GGCATCAACATCCCCAACTAC---------------------------------- atgtaactgtatcccaggatgctggcaacccctcccctcgttctttaaagGCTTTGTGGCCATGGTAAATAAAGCCATGAGTGCCAAGTTTGAGCGGCTGGTTGCGAGTGCTGAGCAGTTGCTGAAGGAGCTGCCCTGGCCTCTTGCCTTCGAGAAGGATAAGTTCCTCACCCCTGACTTCACCTCCCTAGATGTCCTCACCTTTGCTGGCTCTGGCATTCCCTGCAGGCATCAACATCCCCAACTGTCAGTCCCTCCCCTCAGCCTTCTCTCAGTGCATCTCAACCTCTGCCCTT #### Dpp3_ID745_8 --> 1 - 1 Original Alignment tTACATTGGCTTCATT-GAGAGCTACCGTGACCCCTTTGGCTCCCGAGGAGAGTTTGAAg tccaatgccttctgccgggttgccctcactcgcacttttctcccctgcagtTACATTGGCTTCATTCGAGAGCTACCGTGATCCCTTTGGCTCTCGAGGAGAGTTTGAAggtgggttcttggggagtgggggggttgggtgaaagtccctttgtgctggt Alignment from CESAR tTACATTGGCTTCATT-GAGAGCTACCGTGACCCCTTTGGCTCCCGAGGAGAGTTTGAAg tccaatgccttctgccgggttgccctcactcgcacttttctcccctgcagtTACATTGGCTTCATTCGAGAGCTACCGTGATCCCTTTGGCTCTCGAGGAGAGTTTGAAggtgggttcttggggagtgggggggttgggtgaaagtccctttgtgctggt Alignment from Spaln_aa2Genome TTACATTGGCTTCATT-GAGAGCTACCGTGACCCCTTTGGCTCCCGAGGAGAGTTTGAAG tccaatgccttctgccgggttgccctcactcgcacttttctcccctgcagTTACATTGGCTTCATTcGAGAGCTACCGTGATCCCTTTGGCTCTCGAGGAGAGTTTGAAGgtgggttcttggggagtgggggggttgggtgaaagtccctttgtgctggt Alignment from Spaln_nt2Genome TTACATTGGCTTCATT-GAGAGCTACCGTGACCCCTTTGGCTCCCGAGGAGAGTTTGAAG tccaatgccttctgccgggttgccctcactcgcacttttctcccctgcagTTACATTGGCTTCATTCGAGAGCTACCGTGATCCCTTTGGCTCTCGAGGAGAGTTTGAAGgtgggttcttggggagtgggggggttgggtgaaagtccctttgtgctggt Alignment from Pairagon TTACATTGGCTTCATT-GAGAGCTACCGTGACCCCTTTGGCTCCCGAGGAGAGTTTGAAG tccaatgccttctgccgggttgccctcactcgcacttttctcccctgcagTTACATTGGCTTCATTCGAGAGCTACCGTGATCCCTTTGGCTCTCGAGGAGAGTTTGAAGgtgggttcttggggagtgggggggttgggtgaaagtccctttgtgctggt Alignment from Exonerate_protein2genome TTACATTGGCTTCATT-GAGAGCTACCGTGACCCCTTTGGCTCCCGAGGAGAGTTTGAAG tccaatgccttctgccgggttgccctcactcgcacttttctcccctgcagTTACATTGGCTTCATTCGAGAGCTACCGTGATCCCTTTGGCTCTCGAGGAGAGTTTGAAGgtgggttcttggggagtgggggggttgggtgaaagtccctttgtgctggt Alignment from Exonerate_coding2genome TTACATTGGCTTCATT-GAGAGCTACCGTGACCCCTTTGGCTCCCGAGGAGAGTTTGAAG tccaatgccttctgccgggttgccctcactcgcacttttctcccctgcagTTACATTGGCTTCATTCGAGAGCTACCGTGATCCCTTTGGCTCTCGAGGAGAGTTTGAAGgtgggttcttggggagtgggggggttgggtgaaagtccctttgtgctggt Alignment from GeneWise TTACATTGGCTTC-ATTGAGAGCTACCGTGACCCCTTTGGCTCCCGAGGAGAGTTTGAAG tccaatgccttctgccgggttgccctcactcgcacttttctcccctgcagTTACATTGGCTTCATTCGAGAGCTACCGTGATCCCTTTGGCTCTCGAGGAGAGTTTGAAGgtgggttcttggggagtgggggggttgggtgaaagtccctttgtgctggt #### Drap1_ID984_6 --> 0 - 2 Original Alignment GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGT-CACCCTCCTGCCCACTTTCAGag gagatgggcccaggccctctcattaacctgcacatttttctttctcaaagGATGAGTCTGAGGATACGGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCCACCCTCCTGCCCACTTTCAGaggtaagtttcccaggatcaccagaaaagggcatgccataccccccatagtc Alignment from CESAR GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGT-CACCCTCCTGCCCACTTTCAGag gagatgggcccaggccctctcattaacctgcacatttttctttctcaaagGATGAGTCTGAGGATACGGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCCACCCTCCTGCCCACTTTCAGaggtaagtttcccaggatcaccagaaaagggcatgccataccccccatagtc Alignment from Spaln_aa2Genome GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGT-CACCCTCCTGCCCACTTTCAGAG gagatgggcccaggccctctcattaacctgcacatttttctttctcaaagGATGAGTCTGAGGATACGGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTcCACCCTCCTGCCCACTTTCAGAGgtaagtttcccaggatcaccagaaaagggcatgccataccccccatagtc Alignment from Spaln_nt2Genome GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGT-CACCCTCCTGCCCACTTTCAGAG gagatgggcccaggccctctcattaacctgcacatttttctttctcaaagGATGAGTCTGAGGATACGGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCCACCCTCCTGCCCACTTTCAGAGgtaagtttcccaggatcaccagaaaagggcatgccataccccccatagtc Alignment from Pairagon GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGT-CACCCTCCTGCCCACTTTCAGAG gagatgggcccaggccctctcattaacctgcacatttttctttctcaaagGATGAGTCTGAGGATACGGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCCACCCTCCTGCCCACTTTCAGAGgtaagtttcccaggatcaccagaaaagggcatgccataccccccatagtc Alignment from Exonerate_protein2genome GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGT-CACCCTCCTGCCCACTTTCAGAG gagatgggcccaggccctctcattaacctgcacatttttctttctcaaagGATGAGTCTGAGGATACGGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCCACCCTCCTGCCCACTTTCAGAGgtaagtttcccaggatcaccagaaaagggcatgccataccccccatagtc Alignment from Exonerate_coding2genome GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGT-CACCCTCCTGCCCACTTTCAGAG gagatgggcccaggccctctcattaacctgcacatttttctttctcaaagGATGAGTCTGAGGATACGGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCCACCCTCCTGCCCACTTTCAGAGgtaagtttcccaggatcaccagaaaagggcatgccataccccccatagtc Alignment from GeneWise GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCC-AGTCACCCTCCTGCCCACTTTCAGAG gagatgggcccaggccctctcattaacctgcacatttttctttctcaaagGATGAGTCTGAGGATACGGATACTGATGGGGAAGAAGAGACACCACAGCTTCCACCCCAAGCCAGTCCACCCTCCTGCCCACTTTCAGAGgtaagtttcccaggatcaccagaaaagggcatgccataccccccatagtc #### Drap1_ID985_5 --> 1 - 0 Original Alignment ag gGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACA-GACTCTGAGCAGGAG aggtgagtagccaagacatggtctgcagactaactttccttctcttgcaggGGCCGTAAACCGGGGAGCAGTGGCAGGAAGAACGGAGGCACAGGAAGTAAAGGCAAAGACAAGAAGCTGTCCGGGACACGACTCTGAGCAGGAGgtacacaaggctgatgggtgatggcctcagccttgtctgcttttttgttc Alignment from CESAR ag gGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACA-GACTCTGAGCAGGAG aggtagagagccaagacatggtctgcagactaactttccttctcttgcaggGGCCGTAAACCGGGGAGCAGTGGCAGGAAGAACGGAGGCACAGGAAGTAAAGGCAAAGACAAGAAGCTGTCCGGGACACGACTCTGAGCAGGAGgtacacaaggctgatgggtgatggcctcagccttgtctgcttttttgttc Alignment from Spaln_aa2Genome AG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACA-GACTCTGAGCAGGAG AGgtgagtagccaagacatggtctgcagactaactttccttctcttgcagGGGCCGTAAACCGGGGAGCAGTGGCAGGAAGAACGGAGGCACAGGAAGTAAAGGCAAAGACAAGAAGCTGTCCGGGACAcGACTCTGAGCAGGAGgtacacaaggctgatgggtgatggcctcagccttgtctgcttttttgttc Alignment from Spaln_nt2Genome AG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACA-GACTCTGAGCAGGAG AGgtgagtagccaagacatggtctgcagactaactttccttctcttgcagGGGCCGTAAACCGGGGAGCAGTGGCAGGAAGAACGGAGGCACAGGAAGTAAAGGCAAAGACAAGAAGCTGTCCGGGACACGACTCTGAGCAGGAGgtacacaaggctgatgggtgatggcctcagccttgtctgcttttttgttc Alignment from Pairagon AG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACA-GACTCTGAGCAGGAG AGgtgagtagccaagacatggtctgcagactaactttccttctcttgcagGGGCCGTAAACCGGGGAGCAGTGGCAGGAAGAACGGAGGCACAGGAAGTAAAGGCAAAGACAAGAAGCTGTCCGGGACACGACTCTGAGCAGGAGgtacacaaggctgatgggtgatggcctcagccttgtctgcttttttgttc Alignment from Exonerate_protein2genome AG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACA-GACTCTGAGCAGGAG AGgtgagtagccaagacatggtctgcagactaactttccttctcttgcagGGGCCGTAAACCGGGGAGCAGTGGCAGGAAGAACGGAGGCACAGGAAGTAAAGGCAAAGACAAGAAGCTGTCCGGGACACGACTCTGAGCAGGAGgtacacaaggctgatgggtgatggcctcagccttgtctgcttttttgttc Alignment from Exonerate_coding2genome AG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACA-GACTCTGAGCAGGAG AGgtgagtagccaagacatggtctgcagactaactttccttctcttgcagGGGCCGTAAACCGGGGAGCAGTGGCAGGAAGAACGGAGGCACAGGAAGTAAAGGCAAAGACAAGAAGCTGTCCGGGACACGACTCTGAGCAGGAGgtacacaaggctgatgggtgatggcctcagccttgtctgcttttttgttc Alignment from GeneWise AG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGG-ACAGACTCTGAGCAGGAG AGgtgagtagccaagacatggtctgcagactaactttccttctcttgcagGGGCCGTAAACCGGGGAGCAGTGGCAGGAAGAACGGAGGCACAGGAAGTAAAGGCAAAGACAAGAAGCTGTCCGGGACACGACTCTGAGCAGGAGgtacacaaggctgatgggtgatggcctcagccttgtctgcttttttgttc #### Eef1g_ID2562_4 --> 2 - 0 Original Alignment taAGCAATGAGGAGCTGCGAGGAAGTACG-CCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttgattttgtgatgaggtcaaagttctaattttctccgtttgatttacagtaAGCAATGAGGAGCTGCGAGGAAGTACGCCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtgagttttggcacttgggttggtgctgggccatagatagagtcagagcc Alignment from CESAR taAGCAATGAGGAGCTGCGAGGAAGTACG-CCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttgattttgtgatgaggtcaaagttctaattttctccgtttgatttacagtaAGCAATGAGGAGCTGCGAGGAAGTACGCCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtgagttttggcacttgggttggtgctgggccatagatagagtcagagcc Alignment from Spaln_aa2Genome TAAGCAATGAGGAGCTGCGAGGAAGTACG-CCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttgattttgtgatgaggtcaaagttctaattttctccgtttgatttacagTAAGCAATGAGGAGCTGCGAGGAAGTACGcCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtgagttttggcacttgggttggtgctgggccatagatagagtcagagcc Alignment from Spaln_nt2Genome TAAGCAATGAGGAGCTGCGAGGAAGTACG-CCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttgattttgtgatgaggtcaaagttctaattttctccgtttgatttacagTAAGCAATGAGGAGCTGCGAGGAAGTACGCCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtgagttttggcacttgggttggtgctgggccatagatagagtcagagcc Alignment from Pairagon TAAGCAATGAGGAGCTGCGAGGAAGTACG-CCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttgattttgtgatgaggtcaaagttctaattttctccgtttgatttacagTAAGCAATGAGGAGCTGCGAGGAAGTACGCCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtgagttttggcacttgggttggtgctgggccatagatagagtcagagcc Alignment from Exonerate_protein2genome TAAGCAATGAGGAGCTGCGAGGAAGTACG-CCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttgattttgtgatgaggtcaaagttctaattttctccgtttgatttacagTAAGCAATGAGGAGCTGCGAGGAAGTACGCCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtgagttttggcacttgggttggtgctgggccatagatagagtcagagcc Alignment from Exonerate_coding2genome TAAGCAATGAGGAGCTGCGAGGAAGTACG-CCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttgattttgtgatgaggtcaaagttctaattttctccgtttgatttacagTAAGCAATGAGGAGCTGCGAGGAAGTACGCCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtgagttttggcacttgggttggtgctgggccatagatagagtcagagcc Alignment from GeneWise TAAGCAATGAGGAGCTGCGAGGAAGT-ACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttgattttgtgatgaggtcaaagttctaattttctccgtttgatttacagTAAGCAATGAGGAGCTGCGAGGAAGTACGCCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtgagttttggcacttgggttggtgctgggccatagatagagtcagagcc #### Efemp2_ID1029_2 --> 0 - 1 Original Alignment GAATGCACAGATGGCTATGAGTGGGATGCA-GACAGCCAGCACTGCCGGg ttagtggagacagcgagagtggtcactgggttttggttttgttaccatagGAATGCACAGATGGCTATGAGTGGGATGCACGACAGCCAACACTGCCAGggtaagtccttgtctggggtactagccatcttcagggactgggaagggggt Alignment from CESAR GAATGCACAGATGGCTATGAGTGGGATGCA-GACAGCCAGCACTGCCGGg ttagtggagacagcgagagtggtcactgggttttggttttgttaccatagGAATGCACAGATGGCTATGAGTGGGATGCACGACAGCCAACACTGCCAGggtaagtccttgtctggggtactagccatcttcagggactgggaagggggt Alignment from Spaln_aa2Genome GAATGCACAGATGGCTATGAGTGGGATGCA-GACAGCCAGCACTGCCGGG ttagtggagacagcgagagtggtcactgggttttggttttgttaccatagGAATGCACAGATGGCTATGAGTGGGATGCAcGACAGCCAACACTGCCAGGgtaagtccttgtctggggtactagccatcttcagggactgggaagggggt Alignment from Spaln_nt2Genome GAATGCACAGATGGCTATGAGTGGGATGCA-GACAGCCAGCACTGCCGGG ttagtggagacagcgagagtggtcactgggttttggttttgttaccatagGAATGCACAGATGGCTATGAGTGGGATGCACGACAGCCAACACTGCCAGGgtaagtccttgtctggggtactagccatcttcagggactgggaagggggt Alignment from Pairagon GAATGCACAGATGGCTATGAGTGGGATGCA-GACAGCCAGCACTGCCGGG ttagtggagacagcgagagtggtcactgggttttggttttgttaccatagGAATGCACAGATGGCTATGAGTGGGATGCACGACAGCCAACACTGCCAGGgtaagtccttgtctggggtactagccatcttcagggactgggaagggggt Alignment from Exonerate_protein2genome GAATGCACAGATGGCTATGAGTGGGATGCA-GACAGCCAGCACTGCCGGG ttagtggagacagcgagagtggtcactgggttttggttttgttaccatagGAATGCACAGATGGCTATGAGTGGGATGCACGACAGCCAACACTGCCAGGgtaagtccttgtctggggtactagccatcttcagggactgggaagggggt Alignment from Exonerate_coding2genome GAATGCACAGATGGCTATGAGTGGGATGCA-GACAGCCAGCACTGCCGGG ttagtggagacagcgagagtggtcactgggttttggttttgttaccatagGAATGCACAGATGGCTATGAGTGGGATGCACGACAGCCAACACTGCCAGGgtaagtccttgtctggggtactagccatcttcagggactgggaagggggt Alignment from GeneWise GAATGCACAGATGGCTATGAGTGGGAT-GCAGACAGCCAGCACTGCCGGG ttagtggagacagcgagagtggtcactgggttttggttttgttaccatagGAATGCACAGATGGCTATGAGTGGGATGCACGACAGCCAACACTGCCAGGgtaagtccttgtctggggtactagccatcttcagggactgggaagggggt #### Ehbp1l1_ID1217_18 --> 2 - 2 Original Alignment agTGGCAGAAAACAGTT-GCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGat ggaagaacatggtcagagaaggaagcctgacacccccaccttgtcctcagaaTGGCAGAAAACAGTTCGCGCAGCAGCACCGCGAGCAACTCCTGCTGGAGGAGCTTGTGTCCCTAGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAGCGGatgtacgtacctgggtggctcttggttttgaagaaccctcagggtgcactac Alignment from CESAR agTGGCAGAAAACAGTT-GCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGat ggaagaacatggtcagagaaggaagcctgacacccccaccttgtcctcagaaTGGCAGAAAACAGTTCGCGCAGCAGCACCGCGAGCAACTCCTGCTGGAGGAGCTTGTGTCCCTAGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAGCGGatgtacgtacctgggtggctcttggttttgaagaaccctcagggtgcactac Alignment from Spaln_aa2Genome AGTGGCAGAAAACAGTT-GCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT ggaagaacatggtcagagaaggaagcctgacacccccaccttgtcctcagAATGGCAGAAAACAGTTcGCGCAGCAGCACCGCGAGCAACTCCTGCTGGAGGAGCTTGTGTCCCTAGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAGCGGATgtacgtacctgggtggctcttggttttgaagaaccctcagggtgcactac Alignment from Spaln_nt2Genome AGTGGCAGAAAACAGTT-GCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT ggaagaacatggtcagagaaggaagcctgacacccccaccttgtcctcagAATGGCAGAAAACAGTTCGCGCAGCAGCACCGCGAGCAACTCCTGCTGGAGGAGCTTGTGTCCCTAGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAGCGGATgtacgtacctgggtggctcttggttttgaagaaccctcagggtgcactac Alignment from Pairagon AGTGGCAGAAAACAGTT-GCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT ggaagaacatggtcagagaaggaagcctgacacccccaccttgtcctcagAATGGCAGAAAACAGTTCGCGCAGCAGCACCGCGAGCAACTCCTGCTGGAGGAGCTTGTGTCCCTAGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAGCGGATgtacgtacctgggtggctcttggttttgaagaaccctcagggtgcactac Alignment from Exonerate_protein2genome AGTGGCAGAAAACAGTT-GCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT ggaagaacatggtcagagaaggaagcctgacacccccaccttgtcctcagAATGGCAGAAAACAGTTCGCGCAGCAGCACCGCGAGCAACTCCTGCTGGAGGAGCTTGTGTCCCTAGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAGCGGATgtacgtacctgggtggctcttggttttgaagaaccctcagggtgcactac Alignment from Exonerate_coding2genome AGTGGCAGAAAACAGTT-GCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT ggaagaacatggtcagagaaggaagcctgacacccccaccttgtcctcagAATGGCAGAAAACAGTTCGCGCAGCAGCACCGCGAGCAACTCCTGCTGGAGGAGCTTGTGTCCCTAGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAGCGGATgtacgtacctgggtggctcttggttttgaagaaccctcagggtgcactac Alignment from GeneWise GAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT ggaagaacatggtcagagaaggaagcctgacacccccaccttgtcctcagaatggcagAAAACAGTTCGCGCAGCAGCACCGCGAGCAACTCCTGCTGGAGGAGCTTGTGTCCCTAGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAGCGGATgtacgtacctgggtggctcttggttttgaagaaccctcagggtgcactac #### Ehbp1l1_ID1225_10 --> 0 - 2 Original Alignment GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACG-TCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGat acatcgtgtgaatcagagtacatctccttgggatccctgtctccctgcagGCACCACCTACCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTAACCAACGGCTACCGTGGTGTCTGCATCACCAAATTCACCACGCTCCTGGCGCAACGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGatgtaaggtgccaggggtggggggatgggtggggcatgagactgccaggaca Alignment from CESAR GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACG-TCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGat acatcgtgtgaatcagagtacatctccttgggatccctgtctccctgcagGCACCACCTACCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTAACCAACGGCTACCGTGGTGTCTGCATCACCAAATTCACCACGCTCCTGGCGCAACGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGatgtaaggtgccaggggtggggggatgggtggggcatgagactgccaggaca Alignment from Spaln_aa2Genome GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACG-TCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT acatcgtgtgaatcagagtacatctccttgggatccctgtctccctgcagGCACCACCTACCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTAACCAACGGCTACCGTGGTGTCTGCATCACCAAATTCACCACGcTCCTGGCGCAACGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGATgtaaggtgccaggggtggggggatgggtggggcatgagactgccaggaca Alignment from Spaln_nt2Genome GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACG-TCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT acatcgtgtgaatcagagtacatctccttgggatccctgtctccctgcagGCACCACCTACCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTAACCAACGGCTACCGTGGTGTCTGCATCACCAAATTCACCACGCTCCTGGCGCAACGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGATgtaaggtgccaggggtggggggatgggtggggcatgagactgccaggaca Alignment from Pairagon GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACG-TCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT acatcgtgtgaatcagagtacatctccttgggatccctgtctccctgcagGCACCACCTACCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTAACCAACGGCTACCGTGGTGTCTGCATCACCAAATTCACCACGCTCCTGGCGCAACGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGATgtaaggtgccaggggtggggggatgggtggggcatgagactgccaggaca Alignment from Exonerate_protein2genome GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACG-TCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT acatcgtgtgaatcagagtacatctccttgggatccctgtctccctgcagGCACCACCTACCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTAACCAACGGCTACCGTGGTGTCTGCATCACCAAATTCACCACGCTCCTGGCGCAACGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGATgtaaggtgccaggggtggggggatgggtggggcatgagactgccaggaca Alignment from Exonerate_coding2genome GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACG-TCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT acatcgtgtgaatcagagtacatctccttgggatccctgtctccctgcagGCACCACCTACCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTAACCAACGGCTACCGTGGTGTCTGCATCACCAAATTCACCACGCTCCTGGCGCAACGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGATgtaaggtgccaggggtggggggatgggtggggcatgagactgccaggaca Alignment from GeneWise GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACG-TCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT acatcgtgtgaatcagagtacatctccttgggatccctgtctccctgcagGCACCACCTACCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTAACCAACGGCTACCGTGGTGTCTGCATCACCAAATTCACCACGCTCCTGGCGCAACGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGATgtaaggtgccaggggtggggggatgggtggggcatgagactgccaggaca #### Ehbp1l1_ID1230_5 --> 0 - 2 Original Alignment GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTG-CGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCac attgcaactgcctgtcttctcacttcccatatttttctcccctgcaacagGAATCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCATCATGCAGGGCCTGTACCTGCCCAGGTTCCACTTCGACTGCCGGCAGAAGCCCAAATCTGTGAAGGTTGTGCATGCTGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCAAGAAGGCCGTGCCacgtaaacacacaccaatcttctgctgcactccctggcttgtgacctctgac Alignment from CESAR GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTG-CGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCac attgcaactgcctgtcttctcacttcccatatttttctcccctgcaacagGAATCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCATCATGCAGGGCCTGTACCTGCCCAGGTTCCACTTCGACTGCCGGCAGAAGCCCAAATCTGTGAAGGTTGTGCATGCTGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCAAGAAGGCCGTGCCacgtaaacacacaccaatcttctgctgcactccctggcttgtgacctctgac Alignment from Spaln_aa2Genome GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTG-CGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactgcctgtcttctcacttcccatatttttctcccctgcaacagGAATCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCATCATGCAGGGCCTGTACCTGCCCAGGTTCCACTTCGACTGcCGGCAGAAGCCCAAATCTGTGAAGGTTGTGCATGCTGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCAAGAAGGCCGTGCCACgtaaacacacaccaatcttctgctgcactccctggcttgtgacctctgac Alignment from Spaln_nt2Genome GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTG-CGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactgcctgtcttctcacttcccatatttttctcccctgcaacagGAATCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCATCATGCAGGGCCTGTACCTGCCCAGGTTCCACTTCGACTGCCGGCAGAAGCCCAAATCTGTGAAGGTTGTGCATGCTGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCAAGAAGGCCGTGCCACgtaaacacacaccaatcttctgctgcactccctggcttgtgacctctgac Alignment from Pairagon GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTG-CGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactgcctgtcttctcacttcccatatttttctcccctgcaacagGAATCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCATCATGCAGGGCCTGTACCTGCCCAGGTTCCACTTCGACTGCCGGCAGAAGCCCAAATCTGTGAAGGTTGTGCATGCTGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCAAGAAGGCCGTGCCACgtaaacacacaccaatcttctgctgcactccctggcttgtgacctctgac Alignment from Exonerate_protein2genome GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTG-CGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactgcctgtcttctcacttcccatatttttctcccctgcaacagGAATCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCATCATGCAGGGCCTGTACCTGCCCAGGTTCCACTTCGACTGCCGGCAGAAGCCCAAATCTGTGAAGGTTGTGCATGCTGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCAAGAAGGCCGTGCCACgtaaacacacaccaatcttctgctgcactccctggcttgtgacctctgac Alignment from Exonerate_coding2genome GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTG-CGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactgcctgtcttctcacttcccatatttttctcccctgcaacagGAATCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCATCATGCAGGGCCTGTACCTGCCCAGGTTCCACTTCGACTGCCGGCAGAAGCCCAAATCTGTGAAGGTTGTGCATGCTGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCAAGAAGGCCGTGCCACgtaaacacacaccaatcttctgctgcactccctggcttgtgacctctgac Alignment from GeneWise GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGA-CTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactgcctgtcttctcacttcccatatttttctcccctgcaacagGAATCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCATCATGCAGGGCCTGTACCTGCCCAGGTTCCACTTCGACTGCCGGCAGAAGCCCAAATCTGTGAAGGTTGTGCATGCTGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCAAGAAGGCCGTGCCACgtaaacacacaccaatcttctgctgcactccctggcttgtgacctctgac #### Ehbp1l1_ID1231_4 --> 0 - 0 Original Alignment GACCCTCATGTGGAC-CAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAAT tctggtgttgtccctggaaactctgtgcgctacgccctgatgcatgccagGACCCTCATGTGGACCCAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAATgtaggctactgggtatggcggacctgcaattgagatcttaaggcttcagg Alignment from CESAR GACCCTCATGTGGAC-CAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAAT tctggtgttgtccctggaaactctgtgcgctacgccctgatgcatgccagGACCCTCATGTGGACCCAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAATgtaggctactgggtatggcggacctgcaattgagatcttaaggcttcagg Alignment from Spaln_aa2Genome GACCCTCATGTGGAC-CAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAAT tctggtgttgtccctggaaactctgtgcgctacgccctgatgcatgccagGACCCTCATGTGGACcCAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAATgtaggctactgggtatggcggacctgcaattgagatcttaaggcttcagg Alignment from Spaln_nt2Genome GACCCTCATGTGGA-CCAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAAT tctggtgttgtccctggaaactctgtgcgctacgccctgatgcatgccagGACCCTCATGTGGACCCAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAATgtaggctactgggtatggcggacctgcaattgagatcttaaggcttcagg Alignment from Pairagon GACCCTCATGTGGA-CCAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAAT tctggtgttgtccctggaaactctgtgcgctacgccctgatgcatgccagGACCCTCATGTGGACCCAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAATgtaggctactgggtatggcggacctgcaattgagatcttaaggcttcagg Alignment from Exonerate_protein2genome GACCCTCATGTGGAC-CAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAAT tctggtgttgtccctggaaactctgtgcgctacgccctgatgcatgccagGACCCTCATGTGGACCCAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAATgtaggctactgggtatggcggacctgcaattgagatcttaaggcttcagg Alignment from Exonerate_coding2genome GACCCTCATGTGGAC-CAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAAT tctggtgttgtccctggaaactctgtgcgctacgccctgatgcatgccagGACCCTCATGTGGACCCAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAATgtaggctactgggtatggcggacctgcaattgagatcttaaggcttcagg Alignment from GeneWise GACCCTCATGTGGAC-CAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAAT tctggtgttgtccctggaaactctgtgcgctacgccctgatgcatgccagGACCCTCATGTGGACCCAGTATGAAACCAAAGAGTGGACTTTTATTATTGAAAATgtaggctactgggtatggcggacctgcaattgagatcttaaggcttcagg #### Eml3_ID2507_6 --> 2 - 2 Original Alignment aaGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTG-AGCCTCGACTGGgt gttgctctggccttcaagagggaggcttgagtgtcattcccttcccccagaaGGAATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGAAGTCTTGAGGAGCTGCCTAGTGGCCCACCCCCAGAGACCCTGCAGCCTCGACTGGgtgtaaggtattcagttccatgggagtcacccccgcccacaatgggtaccct Alignment from CESAR aaGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTG-AGCCTCGACTGGgt gttgctctggccttcaagagggaggcttgagtgtcattcccttcccccagaaGGAATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGAAGTCTTGAGGAGCTGCCTAGTGGCCCACCCCCAGAGACCCTGCAGCCTCGACTGGgtgtaaggtattcagttccatgggagtcacccccgcccacaatgggtaccct Alignment from Spaln_aa2Genome AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTG-AGCCTCGACTGGGT gttgctctggccttcaagagggaggcttgagtgtcattcccttcccccagAAGGAATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGAAGTCTTGAGGAGCTGCCTAGTGGCCCACCCCCAGAGACCCTGcAGCCTCGACTGGGTgtaaggtattcagttccatgggagtcacccccgcccacaatgggtaccct Alignment from Spaln_nt2Genome AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTG-AGCCTCGACTGGGT gttgctctggccttcaagagggaggcttgagtgtcattcccttcccccagAAGGAATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGAAGTCTTGAGGAGCTGCCTAGTGGCCCACCCCCAGAGACCCTGCAGCCTCGACTGGGTgtaaggtattcagttccatgggagtcacccccgcccacaatgggtaccct Alignment from Pairagon AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTG-AGCCTCGACTGGGT gttgctctggccttcaagagggaggcttgagtgtcattcccttcccccagAAGGAATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGAAGTCTTGAGGAGCTGCCTAGTGGCCCACCCCCAGAGACCCTGCAGCCTCGACTGGGTgtaaggtattcagttccatgggagtcacccccgcccacaatgggtaccct Alignment from Exonerate_protein2genome AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTG-AGCCTCGACTGGGT gttgctctggccttcaagagggaggcttgagtgtcattcccttcccccagAAGGAATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGAAGTCTTGAGGAGCTGCCTAGTGGCCCACCCCCAGAGACCCTGCAGCCTCGACTGGGTgtaaggtattcagttccatgggagtcacccccgcccacaatgggtaccct Alignment from Exonerate_coding2genome AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTG-AGCCTCGACTGGGT gttgctctggccttcaagagggaggcttgagtgtcattcccttcccccagAAGGAATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGAAGTCTTGAGGAGCTGCCTAGTGGCCCACCCCCAGAGACCCTGCAGCCTCGACTGGGTgtaaggtattcagttccatgggagtcacccccgcccacaatgggtaccct Alignment from GeneWise AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTG------------------------AGCCTCGACTGGGT gttgctctggccttcaagagggaggcttgagtgtcattcccttcccccagAAGGAATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGAAGTCTTGAGGAGCTGCCTAGTGGCCCACCCCCAGAGACCCTGCAGCCTCGACTGGGTGTAAGGTATTCAGTTCCATGGGAgtcacccccgcccacaatgggtaccct #### Eml3_ID2510_9 --> 0 - 0 Original Alignment CCCCTGCAGCCCGTGGTTCATATCTGGGAC-TCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gataacaggtcagctttttttcccagcttttcttctgaatccctttgcagCCCCTGCAGCCTGTGGTTCATATCTGGGACCTCAGAGACACTCCTGAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtaatgtgagcatgaagcttttgatcttgtttgtttgtttgttgttgttc Alignment from CESAR CCCCTGCAGCCCGTGGTTCATATCTGGGAC-TCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gataacaggtcagctttttttcccagcttttcttctgaatccctttgcagCCCCTGCAGCCTGTGGTTCATATCTGGGACCTCAGAGACACTCCTGAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtaatgtgagcatgaagcttttgatcttgtttgtttgtttgttgttgttc Alignment from Spaln_aa2Genome CCCCTGCAGCCCGTGGTTCATATCTGGGAC-TCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gataacaggtcagctttttttcccagcttttcttctgaatccctttgcagCCCCTGCAGCCTGTGGTTCATATCTGGGACcTCAGAGACACTCCTGAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtaatgtgagcatgaagcttttgatcttgtttgtttgtttgttgttgttc Alignment from Spaln_nt2Genome CCCCTGCAGCCCGTGGTTCATATCT-GGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gataacaggtcagctttttttcccagcttttcttctgaatccctttgcagCCCCTGCAGCCTGTGGTTCATATCTGGGACCTCAGAGACACTCCTGAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtaatgtgagcatgaagcttttgatcttgtttgtttgtttgttgttgttc Alignment from Pairagon CCCCTGCAGCCCGTGGTTCATATCTGGGA-CTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gataacaggtcagctttttttcccagcttttcttctgaatccctttgcagCCCCTGCAGCCTGTGGTTCATATCTGGGACCTCAGAGACACTCCTGAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtaatgtgagcatgaagcttttgatcttgtttgtttgtttgttgttgttc Alignment from Exonerate_protein2genome CCCCTGCAGCCCGTGGTTCATATCTGGGAC-TCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gataacaggtcagctttttttcccagcttttcttctgaatccctttgcagCCCCTGCAGCCTGTGGTTCATATCTGGGACCTCAGAGACACTCCTGAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtaatgtgagcatgaagcttttgatcttgtttgtttgtttgttgttgttc Alignment from Exonerate_coding2genome CCCCTGCAGCCCGTGGTTCATATCTGGGAC-TCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gataacaggtcagctttttttcccagcttttcttctgaatccctttgcagCCCCTGCAGCCTGTGGTTCATATCTGGGACCTCAGAGACACTCCTGAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtaatgtgagcatgaagcttttgatcttgtttgtttgtttgttgttgttc Alignment from GeneWise CCCCTGCAGCCCGTGGTTCATATCTGGGAC-TCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gataacaggtcagctttttttcccagcttttcttctgaatccctttgcagCCCCTGCAGCCTGTGGTTCATATCTGGGACCTCAGAGACACTCCTGAAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtaatgtgagcatgaagcttttgatcttgtttgtttgtttgttgttgttc #### Eml3_ID2513_12 --> 0 - 1 Original Alignment AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCC-AAGACCCCAGGCAGGGGTGGGGCCAAAg accccagcatccacatttggcctgcaccctgcgtgttcccctctcttcagAAATACAAGAAACCCAAGTTCATCCCCTGCTTTGTCTTCCTTCCTGATGGAGACATCCTAACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCCAAGACCACAGGCAGGGGTGGAGCCAAAggtatgatggggctaggatttaggatatttgtatctcagaaattctgtagg Alignment from CESAR AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCC-AAGACCCCAGGCAGGGGTGGGGCCAAAg accccagcatccacatttggcctgcaccctgcgtgttcccctctcttcagAAATACAAGAAACCCAAGTTCATCCCCTGCTTTGTCTTCCTTCCTGATGGAGACATCCTAACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCCAAGACCACAGGCAGGGGTGGAGCCAAAggtatgatggggctaggatttaggatatttgtatctcagaaattctgtagg Alignment from Spaln_aa2Genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCC-AAGACCCCAGGCAGGGGTGGGGCCAAAG accccagcatccacatttggcctgcaccctgcgtgttcccctctcttcagAAATACAAGAAACCCAAGTTCATCCCCTGCTTTGTCTTCCTTCCTGATGGAGACATCCTAACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCcAAGACCACAGGCAGGGGTGGAGCCAAAGgtatgatggggctaggatttaggatatttgtatctcagaaattctgtagg Alignment from Spaln_nt2Genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTC-CAAGACCCCAGGCAGGGGTGGGGCCAAAG accccagcatccacatttggcctgcaccctgcgtgttcccctctcttcagAAATACAAGAAACCCAAGTTCATCCCCTGCTTTGTCTTCCTTCCTGATGGAGACATCCTAACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCCAAGACCACAGGCAGGGGTGGAGCCAAAGgtatgatggggctaggatttaggatatttgtatctcagaaattctgtagg Alignment from Pairagon AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATT-CCAAGACCCCAGGCAGGGGTGGGGCCAAAG accccagcatccacatttggcctgcaccctgcgtgttcccctctcttcagAAATACAAGAAACCCAAGTTCATCCCCTGCTTTGTCTTCCTTCCTGATGGAGACATCCTAACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCCAAGACCACAGGCAGGGGTGGAGCCAAAGgtatgatggggctaggatttaggatatttgtatctcagaaattctgtagg Alignment from Exonerate_protein2genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCC-AAGACCCCAGGCAGGGGTGGGGCCAAAG accccagcatccacatttggcctgcaccctgcgtgttcccctctcttcagAAATACAAGAAACCCAAGTTCATCCCCTGCTTTGTCTTCCTTCCTGATGGAGACATCCTAACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCCAAGACCACAGGCAGGGGTGGAGCCAAAGgtatgatggggctaggatttaggatatttgtatctcagaaattctgtagg Alignment from Exonerate_coding2genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCC-AAGACCCCAGGCAGGGGTGGGGCCAAAG accccagcatccacatttggcctgcaccctgcgtgttcccctctcttcagAAATACAAGAAACCCAAGTTCATCCCCTGCTTTGTCTTCCTTCCTGATGGAGACATCCTAACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCCAAGACCACAGGCAGGGGTGGAGCCAAAGgtatgatggggctaggatttaggatatttgtatctcagaaattctgtagg Alignment from GeneWise AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGAT-TCCAAGACCCCAGGCAGGGGTGGGGCCAAAG accccagcatccacatttggcctgcaccctgcgtgttcccctctcttcagAAATACAAGAAACCCAAGTTCATCCCCTGCTTTGTCTTCCTTCCTGATGGAGACATCCTAACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCCAAGACCACAGGCAGGGGTGGAGCCAAAGgtatgatggggctaggatttaggatatttgtatctcagaaattctgtagg #### Eml3_ID2515_14 --> 0 - 0 Original Alignment ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAG-CTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTC ggggagaggaatggtcagtatgctcttgaatatttatccttcctttacagATTCCAGAACACTTTGGGGCAGTGAGGGCCATTGCTGAAGGGCTTGGTTCTGAGCCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGTTTCTCCCCTGTTATCCAGgtaagtgctgggtccttgttcttcgcccacagGGACACACTGACGAGCTC Alignment from CESAR ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAG-CTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTC ggggagaggaatggtcagtatgctcttgaatatttatccttcctttacagATTCCAGAACACTTTGGGGCAGTGAGGGCCATTGCTGAAGGGCTTGGTTCTGAGCCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGTTTCTCCCCTGTTATCCAGgtaagtgctgtcctccctgtgcacccctgcagGGACACACTGACGAGCTC Alignment from Spaln_aa2Genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAG-CTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATC--------------------------------CAGGGCCACACTGATGAGCTC ggggagaggaatggtcagtatgctcttgaatatttatccttcctttacagATTCCAGAACACTTTGGGGCAGTGAGGGCCATTGCTGAAGGGCTTGGTTCTGAGcCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGTTTCTCCCCTGTTATCCAGGTAAGTGCTGGGTCCTTGTTCTTCGCCcaCAGGGACACACTGACGAGCTC Alignment from Spaln_nt2Genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAG-CTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATC--------------------------------CAGGGCCACACTGATGAGCTC ggggagaggaatggtcagtatgctcttgaatatttatccttcctttacagATTCCAGAACACTTTGGGGCAGTGAGGGCCATTGCTGAAGGGCTTGGTTCTGAGCCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGTTTCTCCCCTGTTATCCAGGTAAGTGCTGGGTCCTTGTTCTTCGCCCACAGGGACACACTGACGAGCTC Alignment from Pairagon ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAG-CTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTC ggggagaggaatggtcagtatgctcttgaatatttatccttcctttacagATTCCAGAACACTTTGGGGCAGTGAGGGCCATTGCTGAAGGGCTTGGTTCTGAGCCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGTTTCTCCCCTGTTATCCAGgtaagtgctgggtccttgttcttcgcccacagGGACACACTGACGAGCTC Alignment from Exonerate_protein2genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAG-CTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTC ggggagaggaatggtcagtatgctcttgaatatttatccttcctttacagATTCCAGAACACTTTGGGGCAGTGAGGGCCATTGCTGAAGGGCTTGGTTCTGAGCCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGTTTCTCCCCTGTTATCCAGgtaagtgctgggtccttgttcttcgcccacagGGACACACTGACGAGCTC Alignment from Exonerate_coding2genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAG-CTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTC ggggagaggaatggtcagtatgctcttgaatatttatccttcctttacagATTCCAGAACACTTTGGGGCAGTGAGGGCCATTGCTGAAGGGCTTGGTTCTGAGCCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGTTTCTCCCCTGTTATCCAGgtaagtgctgggtccttgttcttcgcccacagGGACACACTGACGAGCTC Alignment from GeneWise ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAG-CTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTC ggggagaggaatggtcagtatgctcttgaatatttatccttcctttacagATTCCAGAACACTTTGGGGCAGTGAGGGCCATTGCTGAAGGGCTTGGTTCTGAGCCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGTTTCTCCCCTGTTATCCAGgtaagtgctgggtccttgttcttcgcccacagGGACACACTGACGAGCTC #### Eml3_ID2516_15 --> 0 - 0 Original Alignment TTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAA-GGCCATGCACTGGCCTGGAGCATGGACCTAAAG TTCTCCCCTGTTATCCAGgtaagtgctgtcctccctgtgcacccctgcagGGACACACTGACGAGCTCTGGGGACTGTGTACACATCCATCCCAGAATCGCTTCCTCACCTGTGGCCATGACAGGCAACTCTGCCTGTGGGATGGGGAACGGCCACGCACTGGCATGGAGCATGGACCTAAAGgtcagtccagctgcccttgatgtgccatgctaaccatgttctgactcccc Alignment from CESAR TTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAA-GGCCATGCACTGGCCTGGAGCATGGACCTAAAG TTCTCCCCTGTTATCCAGgtaagtgctgtcctccctgtgcacccctgcagGGACACACTGACGAGCTCTGGGGACTGTGTACACATCCATCCCAGAATCGCTTCCTCACCTGTGGCCATGACAGGCAACTCTGCCTGTGGGATGGGGAACGGCCACGCACTGGCATGGAGCATGGACCTAAAGgtcagtccagctgcccttgatgtgccatgctaaccatgttctgactcccc Alignment from Spaln_aa2Genome TTCTCCCCTGTTATC--------------------------------CAGGGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAA-GGCCATGCACTGGCCTGGAGCATGGACCTAAAG TTCTCCCCTGTTATCCAGGTAAGTGCTGTCCTCCCTGTGCACCCCtgCAGGGACACACTGACGAGCTCTGGGGACTGTGTACACATCCATCCCAGAATCGCTTCCTCACCTGTGGCCATGACAGGCAACTCTGCCTGTGGGATGGGGAAcGGCCACGCACTGGCATGGAGCATGGACCTAAAGgtcagtccagctgcccttgatgtgccatgctaaccatgttctgactcccc Alignment from Spaln_nt2Genome TTCTCCCCTGTTATC--------------------------------CAGGGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAA-GGCCATGCACTGGCCTGGAGCATGGACCTAAAG TTCTCCCCTGTTATCCAGGTAAGTGCTGTCCTCCCTGTGCACCCCTGCAGGGACACACTGACGAGCTCTGGGGACTGTGTACACATCCATCCCAGAATCGCTTCCTCACCTGTGGCCATGACAGGCAACTCTGCCTGTGGGATGGGGAACGGCCACGCACTGGCATGGAGCATGGACCTAAAGgtcagtccagctgcccttgatgtgccatgctaaccatgttctgactcccc Alignment from Pairagon TTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAA-GGCCATGCACTGGCCTGGAGCATGGACCTAAAG TTCTCCCCTGTTATCCAGgtaagtgctgtcctccctgtgcacccctgcagGGACACACTGACGAGCTCTGGGGACTGTGTACACATCCATCCCAGAATCGCTTCCTCACCTGTGGCCATGACAGGCAACTCTGCCTGTGGGATGGGGAACGGCCACGCACTGGCATGGAGCATGGACCTAAAGgtcagtccagctgcccttgatgtgccatgctaaccatgttctgactcccc Alignment from Exonerate_protein2genome TTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAA-GGCCATGCACTGGCCTGGAGCATGGACCTAAAG TTCTCCCCTGTTATCCAGgtaagtgctgtcctccctgtgcacccctgcagGGACACACTGACGAGCTCTGGGGACTGTGTACACATCCATCCCAGAATCGCTTCCTCACCTGTGGCCATGACAGGCAACTCTGCCTGTGGGATGGGGAACGGCCACGCACTGGCATGGAGCATGGACCTAAAGgtcagtccagctgcccttgatgtgccatgctaaccatgttctgactcccc Alignment from Exonerate_coding2genome TTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGGGAA-GGCCATGCACTGGCCTGGAGCATGGACCTAAAG TTCTCCCCTGTTATCCAGgtaagtgctgtcctccctgtgcacccctgcagGGACACACTGACGAGCTCTGGGGACTGTGTACACATCCATCCCAGAATCGCTTCCTCACCTGTGGCCATGACAGGCAACTCTGCCTGTGGGATGGGGAACGGCCACGCACTGGCATGGAGCATGGACCTAAAGgtcagtccagctgcccttgatgtgccatgctaaccatgttctgactcccc Alignment from GeneWise TTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGCTCTGCCTGTGGGATGGG-GAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG TTCTCCCCTGTTATCCAGgtaagtgctgtcctccctgtgcacccctgcagGGACACACTGACGAGCTCTGGGGACTGTGTACACATCCATCCCAGAATCGCTTCCTCACCTGTGGCCATGACAGGCAACTCTGCCTGTGGGATGGGGAACGGCCACGCACTGGCATGGAGCATGGACCTAAAGgtcagtccagctgcccttgatgtgccatgctaaccatgttctgactcccc #### Eml3_ID2519_18 --> 2 - 0 Original Alignment atGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACT-AAGTCCAGCCGCTTTGGCAGATGTATG gacctgggtcctgccctggctcttctttaattcttcttttcttgttgcagatGGGTTGTACCTTGCAATTGGTTCTCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTCAAGTCCAGCCGCTTTGGCAGATGTATGgtgcgtatgctggggtagaaggtaggatttgttaactgtgggcacagtaa Alignment from CESAR atGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACT-AAGTCCAGCCGCTTTGGCAGATGTATG gacctgggtcctgccctggctcttctttaattcttcttttcttgttgcagatGGGTTGTACCTTGCAATTGGTTCTCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTCAAGTCCAGCCGCTTTGGCAGATGTATGgtgcgtatgctggggtagaaggtaggatttgttaactgtgggcacagtaa Alignment from Spaln_aa2Genome ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACT-AAGTCCAGCCGCTTTGGCAGATGTATG gacctgggtcctgccctggctcttctttaattcttcttttcttgttgcagATGGGTTGTACCTTGCAATTGGTTCTCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTcAAGTCCAGCCGCTTTGGCAGATGTATGgtgcgtatgctggggtagaaggtaggatttgttaactgtgggcacagtaa Alignment from Spaln_nt2Genome ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACT-AAGTCCAGCCGCTTTGGCAGATGTATG gacctgggtcctgccctggctcttctttaattcttcttttcttgttgcagATGGGTTGTACCTTGCAATTGGTTCTCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTCAAGTCCAGCCGCTTTGGCAGATGTATGgtgcgtatgctggggtagaaggtaggatttgttaactgtgggcacagtaa Alignment from Pairagon ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACT-AAGTCCAGCCGCTTTGGCAGATGTATG gacctgggtcctgccctggctcttctttaattcttcttttcttgttgcagATGGGTTGTACCTTGCAATTGGTTCTCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTCAAGTCCAGCCGCTTTGGCAGATGTATGgtgcgtatgctggggtagaaggtaggatttgttaactgtgggcacagtaa Alignment from Exonerate_protein2genome ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACT-AAGTCCAGCCGCTTTGGCAGATGTATG gacctgggtcctgccctggctcttctttaattcttcttttcttgttgcagATGGGTTGTACCTTGCAATTGGTTCTCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTCAAGTCCAGCCGCTTTGGCAGATGTATGgtgcgtatgctggggtagaaggtaggatttgttaactgtgggcacagtaa Alignment from Exonerate_coding2genome ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACT-AAGTCCAGCCGCTTTGGCAGATGTATG gacctgggtcctgccctggctcttctttaattcttcttttcttgttgcagATGGGTTGTACCTTGCAATTGGTTCTCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTCAAGTCCAGCCGCTTTGGCAGATGTATGgtgcgtatgctggggtagaaggtaggatttgttaactgtgggcacagtaa Alignment from GeneWise ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACT-AAGTCCAGCCGCTTTGGCAGATGTATG gacctgggtcctgccctggctcttctttaattcttcttttcttgttgcagATGGGTTGTACCTTGCAATTGGTTCTCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTCAAGTCCAGCCGCTTTGGCAGATGTATGgtgcgtatgctggggtagaaggtaggatttgttaactgtgggcacagtaa #### Eml3_ID2522_21 --> 2 - 0 Original Alignment gtGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTC-TGCAAAGTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG gcaactctaggatgtggtaacagccagagataagagtgtctgtttttcaggtGTGTGGCCTGATGGCTCTGATGGGACAGACATCAATTCCCTATGCCGCTCCCACAATGAACGGGTGGTAGCTGTGGCAGATGATTTCCTGCAAAGTGCACCTCTTTCAGTACCCATGTGCTCGAGCCAAGgcaagtcctcagaagaccattgggcccaggtgtgggtaggtttggtgccc Alignment from CESAR gtGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTC-TGCAAAGTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG gcaactctaggatgtggtaacagccagagataagagtgtctgtttttcaggtGTGTGGCCTGATGGCTCTGATGGGACAGACATCAATTCCCTATGCCGCTCCCACAATGAACGGGTGGTAGCTGTGGCAGATGATTTCCTGCAAAGTGCACCTCTTTCAGTACCCATGTGCTCGAGCCAAGgcaagtcctcagaagaccattgggcccaggtgtgggtaggtttggtgccc Alignment from Spaln_aa2Genome GTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTC-TGCAAAGTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG gcaactctaggatgtggtaacagccagagataagagtgtctgtttttcagGTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAATTCCCTATGCCGCTCCCACAATGAACGGGTGGTAGCTGTGGCAGATGATTTCcTGCAAAGTGCACCTCTTTCAGTACCCATGTGCTCGAGCCAAGgcaagtcctcagaagaccattgggcccaggtgtgggtaggtttggtgccc Alignment from Spaln_nt2Genome GTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTT-CTGCAAAGTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG gcaactctaggatgtggtaacagccagagataagagtgtctgtttttcagGTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAATTCCCTATGCCGCTCCCACAATGAACGGGTGGTAGCTGTGGCAGATGATTTCCTGCAAAGTGCACCTCTTTCAGTACCCATGTGCTCGAGCCAAGgcaagtcctcagaagaccattgggcccaggtgtgggtaggtttggtgccc Alignment from Pairagon GTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTT-CTGCAAAGTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG gcaactctaggatgtggtaacagccagagataagagtgtctgtttttcagGTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAATTCCCTATGCCGCTCCCACAATGAACGGGTGGTAGCTGTGGCAGATGATTTCCTGCAAAGTGCACCTCTTTCAGTACCCATGTGCTCGAGCCAAGgcaagtcctcagaagaccattgggcccaggtgtgggtaggtttggtgccc Alignment from Exonerate_protein2genome GTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTC-TGCAAAGTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG gcaactctaggatgtggtaacagccagagataagagtgtctgtttttcagGTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAATTCCCTATGCCGCTCCCACAATGAACGGGTGGTAGCTGTGGCAGATGATTTCCTGCAAAGTGCACCTCTTTCAGTACCCATGTGCTCGAGCCAAGgcaagtcctcagaagaccattgggcccaggtgtgggtaggtttggtgccc Alignment from Exonerate_coding2genome GTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTC-TGCAAAGTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAG gcaactctaggatgtggtaacagccagagataagagtgtctgtttttcagGTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAATTCCCTATGCCGCTCCCACAATGAACGGGTGGTAGCTGTGGCAGATGATTTCCTGCAAAGTGCACCTCTTTCAGTACCCATGTGCTCGAGCCAAGgcaagtcctcagaagaccattgggcccaggtgtgggtaggtttggtgccc Alignment from GeneWise GTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGAC-TTCTGCAAAGTACACCTCTTTCAGTACCCATGTGCTCGAGCCAAGGCG---------------------CCAAG gcaactctaggatgtggtaacagccagagataagagtgtctgtttttcagGTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAATTCCCTATGCCGCTCCCACAATGAACGGGTGGTAGCTGTGGCAGATGATTTCCTGCAAAGTGCACCTCTTTCAGTACCCATGTGCTCGAGCCAAGGCAAGTCCTCAGAAGACCATTGGGCCCAGgtgtgggtaggtttggtgccc #### Fads1_ID2694_8 --> 0 - 2 Original Alignment GACTTGGCCTGG-ATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCag gtatccctggggatggtgaggacagtgccctgtccccttctttcctacagGACTTGGCCTGGCATGCTCAGCTTCTATGCCCGCATCTTCTTTACTTACATGTCACTGCTGGGGCTGAAGGGCTTCCTGGGGCTTTTCTTCATTGTCaggttgtgacatgtggtgggatgtagaggttggcttggaaagtacaggatac Alignment from CESAR GACTTGGCCTGG-ATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCag gtatccctggggatggtgaggacagtgccctgtccccttctttcctacagGACTTGGCCTGGCATGCTCAGCTTCTATGCCCGCATCTTCTTTACTTACATGTCACTGCTGGGGCTGAAGGGCTTCCTGGGGCTTTTCTTCATTGTCaggttgtgacatgtggtgggatgtagaggttggcttggaaagtacaggatac Alignment from Spaln_aa2Genome GACTTGGCCTGG-ATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gtatccctggggatggtgaggacagtgccctgtccccttctttcctacagGACTTGGCCTGGcATGCTCAGCTTCTATGCCCGCATCTTCTTTACTTACATGTCACTGCTGGGGCTGAAGGGCTTCCTGGGGCTTTTCTTCATTGTCAGgttgtgacatgtggtgggatgtagaggttggcttggaaagtacaggatac Alignment from Spaln_nt2Genome GACTTGGCCTGG-ATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gtatccctggggatggtgaggacagtgccctgtccccttctttcctacagGACTTGGCCTGGCATGCTCAGCTTCTATGCCCGCATCTTCTTTACTTACATGTCACTGCTGGGGCTGAAGGGCTTCCTGGGGCTTTTCTTCATTGTCAGgttgtgacatgtggtgggatgtagaggttggcttggaaagtacaggatac Alignment from Pairagon GACTTGGCCTGG-ATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gtatccctggggatggtgaggacagtgccctgtccccttctttcctacagGACTTGGCCTGGCATGCTCAGCTTCTATGCCCGCATCTTCTTTACTTACATGTCACTGCTGGGGCTGAAGGGCTTCCTGGGGCTTTTCTTCATTGTCAGgttgtgacatgtggtgggatgtagaggttggcttggaaagtacaggatac Alignment from Exonerate_protein2genome GACTTGGCCTGG-ATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gtatccctggggatggtgaggacagtgccctgtccccttctttcctacagGACTTGGCCTGGCATGCTCAGCTTCTATGCCCGCATCTTCTTTACTTACATGTCACTGCTGGGGCTGAAGGGCTTCCTGGGGCTTTTCTTCATTGTCAGgttgtgacatgtggtgggatgtagaggttggcttggaaagtacaggatac Alignment from Exonerate_coding2genome GACTTGGCCTGG-ATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gtatccctggggatggtgaggacagtgccctgtccccttctttcctacagGACTTGGCCTGGCATGCTCAGCTTCTATGCCCGCATCTTCTTTACTTACATGTCACTGCTGGGGCTGAAGGGCTTCCTGGGGCTTTTCTTCATTGTCAGgttgtgacatgtggtgggatgtagaggttggcttggaaagtacaggatac Alignment from GeneWise GACTTGGCCTGG-ATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAGG-- gtatccctggggatggtgaggacagtgccctgtccccttctttcctacagGACTTGGCCTGGCATGCTCAGCTTCTATGCCCGCATCTTCTTTACTTACATGTCACTGCTGGGGCTGAAGGGCTTCCTGGGGCTTTTCTTCATTGTCAGGTTgtgacatgtggtgggatgtagaggttggcttggaaagtacaggatac #### Fads1_ID2695_9 --> 1 - 0 Original Alignment gTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGG-AATGTGGACTGGGTCTCCACCCAG gaactccatggttagctttacttcttatctgtacttgctgtgttctctaggTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGACAATGTGGACTGGGTCTCCACCCAGgtaagtgacagtccttggagccctggacatgcccttagctactgaagagg Alignment from CESAR gTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGG-AATGTGGACTGGGTCTCCACCCAG gaactccatggttagctttacttcttatctgtacttgctgtgttctctaggTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGACAATGTGGACTGGGTCTCCACCCAGgtaagtgacagtccttggagccctggacatgcccttagctactgaagagg Alignment from Spaln_aa2Genome GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGG-AATGTGGACTGGGTCTCCACCCAG gaactccatggttagctttacttcttatctgtacttgctgtgttctctagGTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGAcAATGTGGACTGGGTCTCCACCCAGgtaagtgacagtccttggagccctggacatgcccttagctactgaagagg Alignment from Spaln_nt2Genome GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGG-AATGTGGACTGGGTCTCCACCCAG gaactccatggttagctttacttcttatctgtacttgctgtgttctctagGTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGACAATGTGGACTGGGTCTCCACCCAGgtaagtgacagtccttggagccctggacatgcccttagctactgaagagg Alignment from Pairagon GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGG-AATGTGGACTGGGTCTCCACCCAG gaactccatggttagctttacttcttatctgtacttgctgtgttctctagGTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGACAATGTGGACTGGGTCTCCACCCAGgtaagtgacagtccttggagccctggacatgcccttagctactgaagagg Alignment from Exonerate_protein2genome GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGG-AATGTGGACTGGGTCTCCACCCAG gaactccatggttagctttacttcttatctgtacttgctgtgttctctagGTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGACAATGTGGACTGGGTCTCCACCCAGgtaagtgacagtccttggagccctggacatgcccttagctactgaagagg Alignment from Exonerate_coding2genome GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGG-AATGTGGACTGGGTCTCCACCCAG gaactccatggttagctttacttcttatctgtacttgctgtgttctctagGTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGACAATGTGGACTGGGTCTCCACCCAGgtaagtgacagtccttggagccctggacatgcccttagctactgaagagg Alignment from GeneWise GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGAC-CGGAATGTGGACTGGGTCTCCACCCAG gaactccatggttagctttacttcttatctgtacttgctgtgttctctagGTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGACAATGTGGACTGGGTCTCCACCCAGgtaagtgacagtccttggagccctggacatgcccttagctactgaagagg #### Fads1_ID2696_10 --> 0 - 2 Original Alignment CTGCAGGCAACC-TGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACca atgactctgcactctgacatggagacctcaccgatattctctctcttaagCTGCAGGCAACCCTGCAATGTTCACCAATCCGCCTTCAACAACTGGTTCAGTGGACACCTAAATTTCCAGATTGAACACcagtaattacagagacctgggaaacaggggtggtgcaaaggcaggggatgga Alignment from CESAR CTGCAGGCAACC-TGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACca atgactctgcactctgacatggagacctcaccgatattctctctcttaagCTGCAGGCAACCCTGCAATGTTCACCAATCCGCCTTCAACAACTGGTTCAGTGGACACCTAAATTTCCAGATTGAACACcagtaattacagagacctgggaaacaggggtggtgcaaaggcaggggatgga Alignment from Spaln_aa2Genome CTGCAGGCAACC-TGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA atgactctgcactctgacatggagacctcaccgatattctctctcttaagCTGCAGGCAACCcTGCAATGTTCACCAATCCGCCTTCAACAACTGGTTCAGTGGACACCTAAATTTCCAGATTGAACACCAgtaattacagagacctgggaaacaggggtggtgcaaaggcaggggatgga Alignment from Spaln_nt2Genome CTGCAGGCAACC-TGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA atgactctgcactctgacatggagacctcaccgatattctctctcttaagCTGCAGGCAACCCTGCAATGTTCACCAATCCGCCTTCAACAACTGGTTCAGTGGACACCTAAATTTCCAGATTGAACACCAgtaattacagagacctgggaaacaggggtggtgcaaaggcaggggatgga Alignment from Pairagon CTGCAGGCAA-CCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA atgactctgcactctgacatggagacctcaccgatattctctctcttaagCTGCAGGCAACCCTGCAATGTTCACCAATCCGCCTTCAACAACTGGTTCAGTGGACACCTAAATTTCCAGATTGAACACCAgtaattacagagacctgggaaacaggggtggtgcaaaggcaggggatgga Alignment from Exonerate_protein2genome CTGCAGGCAACC-TGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA atgactctgcactctgacatggagacctcaccgatattctctctcttaagCTGCAGGCAACCCTGCAATGTTCACCAATCCGCCTTCAACAACTGGTTCAGTGGACACCTAAATTTCCAGATTGAACACCAgtaattacagagacctgggaaacaggggtggtgcaaaggcaggggatgga Alignment from Exonerate_coding2genome CTGCAGGCAACC-TGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA atgactctgcactctgacatggagacctcaccgatattctctctcttaagCTGCAGGCAACCCTGCAATGTTCACCAATCCGCCTTCAACAACTGGTTCAGTGGACACCTAAATTTCCAGATTGAACACCAgtaattacagagacctgggaaacaggggtggtgcaaaggcaggggatgga Alignment from GeneWise ---------------------------CTGCAGGCAACCTGCAACGTTCACCAATCAGCCTTCAACAACTGGTTCAGTGGCCACCTAAATTTCCAGATTGAACACCA atgactctgcactctgacatggagACCTCACCGATATTCTCTCTCTTAAGCTGCAGGCAACCCTGCAATGTTCACCAATCCGCCTTCAACAACTGGTTCAGTGGACACCTAAATTTCCAGATTGAACACCAgtaattacagagacctgggaaacaggggtggtgcaaaggcaggggatgga #### Fads2_ID2675_9 --> 1 - 0 Original Alignment gTTCCTGGAGAGCCACTGGTTTGTGTGG-GTCACACAGATGAACCACCTTGTCATGGAGATTGATCTTGATCACTACCGGGACTGGTTCAGCAGCCAG ctgcctctcgcccaccctgaggcttcgattacttttatatgtctgcacaggTTCCTGGAGAGCCACTGGTTTGTGTGGCGTCACACAGATGAACCACCTTGTCATGGAGATTGATCTTGATCACTACTGGGACTGGTTCAGCAGCCAGgtacggagaggcagaggtagtcacgggggttggaaagctgtcccatgtcc Alignment from CESAR gTTCCTGGAGAGCCACTGGTTTGTGTGG-GTCACACAGATGAACCACCTTGTCATGGAGATTGATCTTGATCACTACCGGGACTGGTTCAGCAGCCAG ctgcctctcgcccaccctgaggcttcgattacttttatatgtctgcacaggTTCCTGGAGAGCCACTGGTTTGTGTGGCGTCACACAGATGAACCACCTTGTCATGGAGATTGATCTTGATCACTACTGGGACTGGTTCAGCAGCCAGgtacggagaggcagaggtagtcacgggggttggaaagctgtcccatgtcc Alignment from Spaln_aa2Genome GTTCCTGGAGAGCCACTGGTTTGTGTGG-GTCACACAGATGAACCACCTTGTCATGGAGATTGATCTTGATCACTACCGGGACTGGTTCAGCAGCCAG ctgcctctcgcccaccctgaggcttcgattacttttatatgtctgcacagGTTCCTGGAGAGCCACTGGTTTGTGTGGcGTCACACAGATGAACCACCTTGTCATGGAGATTGATCTTGATCACTACTGGGACTGGTTCAGCAGCCAGgtacggagaggcagaggtagtcacgggggttggaaagctgtcccatgtcc Alignment from Spaln_nt2Genome GTTCCTGGAGAGCCACTGGTTTGTGTGG-GTCACACAGATGAACCACCTTGTCATGGAGATTGATCTTGATCACTACCGGGACTGGTTCAGCAGCCAG ctgcctctcgcccaccctgaggcttcgattacttttatatgtctgcacagGTTCCTGGAGAGCCACTGGTTTGTGTGGCGTCACACAGATGAACCACCTTGTCATGGAGATTGATCTTGATCACTACTGGGACTGGTTCAGCAGCCAGgtacggagaggcagaggtagtcacgggggttggaaagctgtcccatgtcc Alignment from Pairagon GTTCCTGGAGAGCCACTGGTTTGTGTGG-GTCACACAGATGAACCACCTTGTCATGGAGATTGATCTTGATCACTACCGGGACTGGTTCAGCAGCCAG ctgcctctcgcccaccctgaggcttcgattacttttatatgtctgcacagGTTCCTGGAGAGCCACTGGTTTGTGTGGCGTCACACAGATGAACCACCTTGTCATGGAGATTGATCTTGATCACTACTGGGACTGGTTCAGCAGCCAGgtacggagaggcagaggtagtcacgggggttggaaagctgtcccatgtcc Alignment from Exonerate_protein2genome GTTCCTGGAGAGCCACTGGTTTGTGTGG-GTCACACAGATGAACCACCTTGTCATGGAGATTGATCTTGATCACTACCGGGACTGGTTCAGCAGCCAG ctgcctctcgcccaccctgaggcttcgattacttttatatgtctgcacagGTTCCTGGAGAGCCACTGGTTTGTGTGGCGTCACACAGATGAACCACCTTGTCATGGAGATTGATCTTGATCACTACTGGGACTGGTTCAGCAGCCAGgtacggagaggcagaggtagtcacgggggttggaaagctgtcccatgtcc Alignment from Exonerate_coding2genome GTTCCTGGAGAGCCACTGGTTTGTGTGG-GTCACACAGATGAACCACCTTGTCATGGAGATTGATCTTGATCACTACCGGGACTGGTTCAGCAGCCAG ctgcctctcgcccaccctgaggcttcgattacttttatatgtctgcacagGTTCCTGGAGAGCCACTGGTTTGTGTGGCGTCACACAGATGAACCACCTTGTCATGGAGATTGATCTTGATCACTACTGGGACTGGTTCAGCAGCCAGgtacggagaggcagaggtagtcacgggggttggaaagctgtcccatgtcc Alignment from GeneWise GTTCCTGGAGAGCCACTGGTTTGTGTGG-GTCACACAGATGAACCACCTTGTCATGGAGATTGATCTTGATCACTACCGGGACTGGTTCAGCAGCCAG ctgcctctcgcccaccctgaggcttcgattacttttatatgtctgcacagGTTCCTGGAGAGCCACTGGTTTGTGTGGCGTCACACAGATGAACCACCTTGTCATGGAGATTGATCTTGATCACTACTGGGACTGGTTCAGCAGCCAGgtacggagaggcagaggtagtcacgggggttggaaagctgtcccatgtcc #### Fads3_ID2662_5 --> 0 - 0 Original Alignment GGCTTTTCCGCCCACTGGTGGAATTTCCGC-CACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaagctggagcacagcataactctgcctgagagcatctctgattcttagGACTTTTCCGCCCACTGGTGGAATTTCCGCCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGACGTGACTGTTGCACCTGTCTTCCTTCTGGGGGAGTCATCTGTGGAGgtttgtagggtgagtcatgagttttctcaagagaggcctgcagctaaggg Alignment from CESAR GGCTTTTCCGCCCACTGGTGGAATTTCCGC-CACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaagctggagcacagcataactctgcctgagagcatctctgattcttagGACTTTTCCGCCCACTGGTGGAATTTCCGCCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGACGTGACTGTTGCACCTGTCTTCCTTCTGGGGGAGTCATCTGTGGAGgtttgtagggtgagtcatgagttttctcaagagaggcctgcagctaaggg Alignment from Spaln_aa2Genome GGCTTTTCCGCCCACTGGTGGAATTTCCGC-CACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaagctggagcacagcataactctgcctgagagcatctctgattcttagGACTTTTCCGCCCACTGGTGGAATTTCCGCcCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGACGTGACTGTTGCACCTGTCTTCCTTCTGGGGGAGTCATCTGTGGAGgtttgtagggtgagtcatgagttttctcaagagaggcctgcagctaaggg Alignment from Spaln_nt2Genome GGCTTTTCCGCCCACTGGTGGAATTTCCG-CCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaagctggagcacagcataactctgcctgagagcatctctgattcttagGACTTTTCCGCCCACTGGTGGAATTTCCGCCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGACGTGACTGTTGCACCTGTCTTCCTTCTGGGGGAGTCATCTGTGGAGgtttgtagggtgagtcatgagttttctcaagagaggcctgcagctaaggg Alignment from Pairagon GGCTTTTCCGCCCACTGGTGGAATTTCCG-CCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaagctggagcacagcataactctgcctgagagcatctctgattcttagGACTTTTCCGCCCACTGGTGGAATTTCCGCCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGACGTGACTGTTGCACCTGTCTTCCTTCTGGGGGAGTCATCTGTGGAGgtttgtagggtgagtcatgagttttctcaagagaggcctgcagctaaggg Alignment from Exonerate_protein2genome GGCTTTTCCGCCCACTGGTGGAATTTCCGC-CACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaagctggagcacagcataactctgcctgagagcatctctgattcttagGACTTTTCCGCCCACTGGTGGAATTTCCGCCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGACGTGACTGTTGCACCTGTCTTCCTTCTGGGGGAGTCATCTGTGGAGgtttgtagggtgagtcatgagttttctcaagagaggcctgcagctaaggg Alignment from Exonerate_coding2genome GGCTTTTCCGCCCACTGGTGGAATTTCCGC-CACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaagctggagcacagcataactctgcctgagagcatctctgattcttagGACTTTTCCGCCCACTGGTGGAATTTCCGCCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGACGTGACTGTTGCACCTGTCTTCCTTCTGGGGGAGTCATCTGTGGAGgtttgtagggtgagtcatgagttttctcaagagaggcctgcagctaaggg Alignment from GeneWise GGCTTTTCCGCCCACTGGTGGAATTTC-CGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaagctggagcacagcataactctgcctgagagcatctctgattcttagGACTTTTCCGCCCACTGGTGGAATTTCCGCCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGACGTGACTGTTGCACCTGTCTTCCTTCTGGGGGAGTCATCTGTGGAGgtttgtagggtgagtcatgagttttctcaagagaggcctgcagctaaggg #### Fads3_ID2664_7 --> 2 - 0 Original Alignment ttGGCCCTCCGCTGCTCACCTTGGTGAAC-TTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG tggataacccatccctgttccccaatgcttaacatgtaatgtttttccagttGGCCCTCCACTGCTCACATTGGTGAACCTTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACGgtaactaggtactgctcaggaccccaggcatgaagctttctgggagagtg Alignment from CESAR ttGGCCCTCCGCTGCTCACCTTGGTGAAC-TTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG tggataacccatccctgttccccaatgcttaacatgtaatgtttttccagttGGCCCTCCACTGCTCACATTGGTGAACCTTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACGgtaactaggtactgctcaggaccccaggcatgaagctttctgggagagtg Alignment from Spaln_aa2Genome TTGGCCCTCCGCTGCTCACCTTGGTGAAC-TTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG tggataacccatccctgttccccaatgcttaacatgtaatgtttttccagTTGGCCCTCCACTGCTCACATTGGTGAACcTTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACGgtaactaggtactgctcaggaccccaggcatgaagctttctgggagagtg Alignment from Spaln_nt2Genome TTGGCCCTCCGCTGCTCACCTTGGTGAA-CTTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG tggataacccatccctgttccccaatgcttaacatgtaatgtttttccagTTGGCCCTCCACTGCTCACATTGGTGAACCTTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACGgtaactaggtactgctcaggaccccaggcatgaagctttctgggagagtg Alignment from Pairagon TTGGCCCTCCGCTGCTCACCTTGGTGAA-CTTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG tggataacccatccctgttccccaatgcttaacatgtaatgtttttccagTTGGCCCTCCACTGCTCACATTGGTGAACCTTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACGgtaactaggtactgctcaggaccccaggcatgaagctttctgggagagtg Alignment from Exonerate_protein2genome TTGGCCCTCCGCTGCTCACCTTGGTGAAC-TTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG tggataacccatccctgttccccaatgcttaacatgtaatgtttttccagTTGGCCCTCCACTGCTCACATTGGTGAACCTTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACGgtaactaggtactgctcaggaccccaggcatgaagctttctgggagagtg Alignment from Exonerate_coding2genome TTGGCCCTCCGCTGCTCACCTTGGTGAAC-TTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG tggataacccatccctgttccccaatgcttaacatgtaatgtttttccagTTGGCCCTCCACTGCTCACATTGGTGAACCTTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACGgtaactaggtactgctcaggaccccaggcatgaagctttctgggagagtg Alignment from GeneWise TTGGCCCTCCGCTGCTCACCTTGGTG-AACTTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG tggataacccatccctgttccccaatgcttaacatgtaatgtttttccagTTGGCCCTCCACTGCTCACATTGGTGAACCTTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACGgtaactaggtactgctcaggaccccaggcatgaagctttctgggagagtg #### Fads3_ID2665_8 --> 0 - 2 Original Alignment GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTG-TCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCag cctgcctcccaggtccccagcccatggataaaatgacaaatctgttttagGACTTGCTGTGGGCTGCCAGTTTCTACTCCCACTTTTTCTTGCTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCaggtaagaccagactcagagtgatggggagttgggaggtctcacacaggcgg Alignment from CESAR GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTG-TCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCag cctgcctcccaggtccccagcccatggataaaatgacaaatctgttttagGACTTGCTGTGGGCTGCCAGTTTCTACTCCCACTTTTTCTTGCTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCaggtaagaccagactcagagtgatggggagttgggaggtctcacacaggcgg Alignment from Spaln_aa2Genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTG-TCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgcctcccaggtccccagcccatggataaaatgacaaatctgttttagGACTTGCTGTGGGCTGCCAGTTTCTACTCCCACTTTTTCTTGcTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAGgtaagaccagactcagagtgatggggagttgggaggtctcacacaggcgg Alignment from Spaln_nt2Genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTG-TCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgcctcccaggtccccagcccatggataaaatgacaaatctgttttagGACTTGCTGTGGGCTGCCAGTTTCTACTCCCACTTTTTCTTGCTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAGgtaagaccagactcagagtgatggggagttgggaggtctcacacaggcgg Alignment from Pairagon GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTG-TCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgcctcccaggtccccagcccatggataaaatgacaaatctgttttagGACTTGCTGTGGGCTGCCAGTTTCTACTCCCACTTTTTCTTGCTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAGgtaagaccagactcagagtgatggggagttgggaggtctcacacaggcgg Alignment from Exonerate_protein2genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTG-TCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgcctcccaggtccccagcccatggataaaatgacaaatctgttttagGACTTGCTGTGGGCTGCCAGTTTCTACTCCCACTTTTTCTTGCTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAGgtaagaccagactcagagtgatggggagttgggaggtctcacacaggcgg Alignment from Exonerate_coding2genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTG-TCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgcctcccaggtccccagcccatggataaaatgacaaatctgttttagGACTTGCTGTGGGCTGCCAGTTTCTACTCCCACTTTTTCTTGCTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAGgtaagaccagactcagagtgatggggagttgggaggtctcacacaggcgg Alignment from GeneWise GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTG-TCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgcctcccaggtccccagcccatggataaaatgacaaatctgttttagGACTTGCTGTGGGCTGCCAGTTTCTACTCCCACTTTTTCTTGCTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAGgtaagaccagactcagagtgatggggagttgggaggtctcacacaggcgg #### Fau_ID1402_2 --> 0 - 1 Original Alignment GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCA-GGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAg cacggggaaagtttgtctatgtataaacacccttgttcttacccttccagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAAGCTGTGCTTCTGGCACGGCTCACCACTGGAAGATGAGGCCACCCTGGGCCAGTGTGGTGTAGAGGCCCTGACCACTCTGGAGGTAGCAGGCCGCATGCTGGGAggtggagggtgggaggtcagtgctttttttcagagctaatggaatgcccgt Alignment from CESAR GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCA-GGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAg cacggggaaagtttgtctatgtataaacacccttgttcttacccttccagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAAGCTGTGCTTCTGGCACGGCTCACCACTGGAAGATGAGGCCACCCTGGGCCAGTGTGGTGTAGAGGCCCTGACCACTCTGGAGGTAGCAGGCCGCATGCTGGGAggtggagggtgggaggtcagtgctttttttcagagctaatggaatgcccgt Alignment from Spaln_aa2Genome GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCA-GGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacggggaaagtttgtctatgtataaacacccttgttcttacccttccagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAAGCTGTGCTTCTGGCAcGGCTCACCACTGGAAGATGAGGCCACCCTGGGCCAGTGTGGTGTAGAGGCCCTGACCACTCTGGAGGTAGCAGGCCGCATGCTGGGAGgtggagggtgggaggtcagtgctttttttcagagctaatggaatgcccgt Alignment from Spaln_nt2Genome GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCA-GGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacggggaaagtttgtctatgtataaacacccttgttcttacccttccagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAAGCTGTGCTTCTGGCACGGCTCACCACTGGAAGATGAGGCCACCCTGGGCCAGTGTGGTGTAGAGGCCCTGACCACTCTGGAGGTAGCAGGCCGCATGCTGGGAGgtggagggtgggaggtcagtgctttttttcagagctaatggaatgcccgt Alignment from Pairagon GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCA-GGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacggggaaagtttgtctatgtataaacacccttgttcttacccttccagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAAGCTGTGCTTCTGGCACGGCTCACCACTGGAAGATGAGGCCACCCTGGGCCAGTGTGGTGTAGAGGCCCTGACCACTCTGGAGGTAGCAGGCCGCATGCTGGGAGgtggagggtgggaggtcagtgctttttttcagagctaatggaatgcccgt Alignment from Exonerate_protein2genome GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCA-GGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacggggaaagtttgtctatgtataaacacccttgttcttacccttccagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAAGCTGTGCTTCTGGCACGGCTCACCACTGGAAGATGAGGCCACCCTGGGCCAGTGTGGTGTAGAGGCCCTGACCACTCTGGAGGTAGCAGGCCGCATGCTGGGAGgtggagggtgggaggtcagtgctttttttcagagctaatggaatgcccgt Alignment from Exonerate_coding2genome GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCA-GGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacggggaaagtttgtctatgtataaacacccttgttcttacccttccagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAAGCTGTGCTTCTGGCACGGCTCACCACTGGAAGATGAGGCCACCCTGGGCCAGTGTGGTGTAGAGGCCCTGACCACTCTGGAGGTAGCAGGCCGCATGCTGGGAGgtggagggtgggaggtcagtgctttttttcagagctaatggaatgcccgt Alignment from GeneWise GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTG-GCAGGCTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacggggaaagtttgtctatgtataaacacccttgttcttacccttccagGATCATGTGGCCTCCCTGGAAGGCATGGCCCCTGAAGATCAAGCTGTGCTTCTGGCACGGCTCACCACTGGAAGATGAGGCCACCCTGGGCCAGTGTGGTGTAGAGGCCCTGACCACTCTGGAGGTAGCAGGCCGCATGCTGGGAGgtggagggtgggaggtcagtgctttttttcagagctaatggaatgcccgt #### Fgf8_ID9567_2 --> 1 - 0 Original Alignment gCTGTTGCACTTGCTG-GTTCTCTGCCTCCAAGCCCAG gccccctccactccatgtgcctctttccgcccggttctttgccttgccaggTTGTTGCAATTGCTGCGTTCTCTGCCTCCAAGCCCAGgtaagtagtgctgcacagaggcaggggcggggcgcatggtacccacctga Alignment from CESAR gCTGTTGCACTTGCTG-GTTCTCTGCCTCCAAGCCCAG gccccctccactccatgtgcctctttccgcccggttctttgccttgccaggTTGTTGCAATTGCTGCGTTCTCTGCCTCCAAGCCCAGgtaagtagtgctgcacagaggcaggggcggggcgcatggtacccacctga Alignment from Spaln_aa2Genome GCTGTTGCACTTGCTG-GTTCTCTGCCTCCAAGCCCAG gccccctccactccatgtgcctctttccgcccggttctttgccttgccagGTTGTTGCAATTGCTGcGTTCTCTGCCTCCAAGCCCAGgtaagtagtgctgcacagaggcaggggcggggcgcatggtacccacctga Alignment from Spaln_nt2Genome GCTGTTGCACTTGCTG-GTTCTCTGCCTCCAAGCCCAG gccccctccactccatgtgcctctttccgcccggttctttgccttgccagGTTGTTGCAATTGCTGCGTTCTCTGCCTCCAAGCCCAGgtaagtagtgctgcacagaggcaggggcggggcgcatggtacccacctga Alignment from Pairagon GCTGTTGCACTTGCTG-GTTCTCTGCCTCCAAGCCCAG gccccctccactccatgtgcctctttccgcccggttctttgccttgccagGTTGTTGCAATTGCTGCGTTCTCTGCCTCCAAGCCCAGgtaagtagtgctgcacagaggcaggggcggggcgcatggtacccacctga Alignment from Exonerate_protein2genome GCTGTTGCACTTGCTG-GTTCTCTGCCTCCAAGCCCAG gccccctccactccatgtgcctctttccgcccggttctttgccttgccagGTTGTTGCAATTGCTGCGTTCTCTGCCTCCAAGCCCAGgtaagtagtgctgcacagaggcaggggcggggcgcatggtacccacctga Alignment from Exonerate_coding2genome gccccctccactccatgtgcctctttccgcccggttctttgccttgccaggttgttgcaattgctgcgttctctgcctccaagcccaggtaagtagtgctgcacagaggcaggggcggggcgcatggtacccacctga Alignment from GeneWise gccccctccactccatgtgcctctttccgcccggttctttgccttgccaggttgttgcaattgctgcgttctctgcctccaagcccaggtaagtagtgctgcacagaggcaggggcggggcgcatggtacccacctga #### Fibp_ID1005_2 --> 2 - 2 Original Alignment tgAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGAC-ACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGag tggaacacctggagggcctctagggtctcacactgcttcctcttttgcagtgAATGATGCAGTGGCTCTGCGAGTACGTTCCGGAATTTTGGAGCAGACCGGAGCCACCACAGGAGTGCTGCAGAGTGACCACCATGGACCACTACCGCACCTTTCGCATGCTTGAGCGACTGCTGCATGCACCACCAAAGCTGCTGCACCAGCTCATCTTCCAGGTTCCTCCCTCCCGACAGACGCTCCTCATCGAGaggtaaggaacagggtggtggatgggggtgggtactggcagggatgtcagtc Alignment from CESAR tgAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGAC-ACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGag tggaacacctggagggcctctagggtctcacactgcttcctcttttgcagtgAATGATGCAGTGGCTCTGCGAGTACGTTCCGGAATTTTGGAGCAGACCGGAGCCACCACAGGAGTGCTGCAGAGTGACCACCATGGACCACTACCGCACCTTTCGCATGCTTGAGCGACTGCTGCATGCACCACCAAAGCTGCTGCACCAGCTCATCTTCCAGGTTCCTCCCTCCCGACAGACGCTCCTCATCGAGaggtaaggaacagggtggtggatgggggtgggtactggcagggatgtcagtc Alignment from Spaln_aa2Genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGAC-ACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG tggaacacctggagggcctctagggtctcacactgcttcctcttttgcagTGAATGATGCAGTGGCTCTGCGAGTACGTTCCGGAATTTTGGAGCAGACCGGAGCCACCACAGGAGTGCTGCAGAGTGACcACCATGGACCACTACCGCACCTTTCGCATGCTTGAGCGACTGCTGCATGCACCACCAAAGCTGCTGCACCAGCTCATCTTCCAGGTTCCTCCCTCCCGACAGACGCTCCTCATCGAGAGgtaaggaacagggtggtggatgggggtgggtactggcagggatgtcagtc Alignment from Spaln_nt2Genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGA-CACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG tggaacacctggagggcctctagggtctcacactgcttcctcttttgcagTGAATGATGCAGTGGCTCTGCGAGTACGTTCCGGAATTTTGGAGCAGACCGGAGCCACCACAGGAGTGCTGCAGAGTGACCACCATGGACCACTACCGCACCTTTCGCATGCTTGAGCGACTGCTGCATGCACCACCAAAGCTGCTGCACCAGCTCATCTTCCAGGTTCCTCCCTCCCGACAGACGCTCCTCATCGAGAGgtaaggaacagggtggtggatgggggtgggtactggcagggatgtcagtc Alignment from Pairagon TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGA-CACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG tggaacacctggagggcctctagggtctcacactgcttcctcttttgcagTGAATGATGCAGTGGCTCTGCGAGTACGTTCCGGAATTTTGGAGCAGACCGGAGCCACCACAGGAGTGCTGCAGAGTGACCACCATGGACCACTACCGCACCTTTCGCATGCTTGAGCGACTGCTGCATGCACCACCAAAGCTGCTGCACCAGCTCATCTTCCAGGTTCCTCCCTCCCGACAGACGCTCCTCATCGAGAGgtaaggaacagggtggtggatgggggtgggtactggcagggatgtcagtc Alignment from Exonerate_protein2genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGAC-ACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG tggaacacctggagggcctctagggtctcacactgcttcctcttttgcagTGAATGATGCAGTGGCTCTGCGAGTACGTTCCGGAATTTTGGAGCAGACCGGAGCCACCACAGGAGTGCTGCAGAGTGACCACCATGGACCACTACCGCACCTTTCGCATGCTTGAGCGACTGCTGCATGCACCACCAAAGCTGCTGCACCAGCTCATCTTCCAGGTTCCTCCCTCCCGACAGACGCTCCTCATCGAGAGgtaaggaacagggtggtggatgggggtgggtactggcagggatgtcagtc Alignment from Exonerate_coding2genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGAC-ACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG tggaacacctggagggcctctagggtctcacactgcttcctcttttgcagTGAATGATGCAGTGGCTCTGCGAGTACGTTCCGGAATTTTGGAGCAGACCGGAGCCACCACAGGAGTGCTGCAGAGTGACCACCATGGACCACTACCGCACCTTTCGCATGCTTGAGCGACTGCTGCATGCACCACCAAAGCTGCTGCACCAGCTCATCTTCCAGGTTCCTCCCTCCCGACAGACGCTCCTCATCGAGAGgtaaggaacagggtggtggatgggggtgggtactggcagggatgtcagtc Alignment from GeneWise TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGAC-ACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG tggaacacctggagggcctctagggtctcacactgcttcctcttttgcagTGAATGATGCAGTGGCTCTGCGAGTACGTTCCGGAATTTTGGAGCAGACCGGAGCCACCACAGGAGTGCTGCAGAGTGACCACCATGGACCACTACCGCACCTTTCGCATGCTTGAGCGACTGCTGCATGCACCACCAAAGCTGCTGCACCAGCTCATCTTCCAGGTTCCTCCCTCCCGACAGACGCTCCTCATCGAGAGgtaaggaacagggtggtggatgggggtgggtactggcagggatgtcagtc #### Fibp_ID1011_8 --> 0 - 0 Original Alignment AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTG-ACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccccacatctagagcaggagacagaactattttcttctattcttttagAATCTGTCTCGGGGCCTGGTGAATGTGGCTGCCAAGCTGCACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTTGTGGAGAAGgtaaccagtcctgtcctcaaccacccctggtccccatcctgctgtcccta Alignment from CESAR AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTG-ACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccccacatctagagcaggagacagaactattttcttctattcttttagAATCTGTCTCGGGGCCTGGTGAATGTGGCTGCCAAGCTGCACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTTGTGGAGAAGgtaaccagtcctgtcctcaaccacccctggtccccatcctgctgtcccta Alignment from Spaln_aa2Genome AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTG-ACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccccacatctagagcaggagacagaactattttcttctattcttttagAATCTGTCTCGGGGCCTGGTGAATGTGGCTGCCAAGCTGcACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTTGTGGAGAAGgtaaccagtcctgtcctcaaccacccctggtccccatcctgctgtcccta Alignment from Spaln_nt2Genome AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTG-ACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccccacatctagagcaggagacagaactattttcttctattcttttagAATCTGTCTCGGGGCCTGGTGAATGTGGCTGCCAAGCTGCACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTTGTGGAGAAGgtaaccagtcctgtcctcaaccacccctggtccccatcctgctgtcccta Alignment from Pairagon AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTG-ACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccccacatctagagcaggagacagaactattttcttctattcttttagAATCTGTCTCGGGGCCTGGTGAATGTGGCTGCCAAGCTGCACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTTGTGGAGAAGgtaaccagtcctgtcctcaaccacccctggtccccatcctgctgtcccta Alignment from Exonerate_protein2genome AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTG-ACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccccacatctagagcaggagacagaactattttcttctattcttttagAATCTGTCTCGGGGCCTGGTGAATGTGGCTGCCAAGCTGCACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTTGTGGAGAAGgtaaccagtcctgtcctcaaccacccctggtccccatcctgctgtcccta Alignment from Exonerate_coding2genome AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTG-ACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccccacatctagagcaggagacagaactattttcttctattcttttagAATCTGTCTCGGGGCCTGGTGAATGTGGCTGCCAAGCTGCACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTTGTGGAGAAGgtaaccagtcctgtcctcaaccacccctggtccccatcctgctgtcccta Alignment from GeneWise AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAG-CTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccccacatctagagcaggagacagaactattttcttctattcttttagAATCTGTCTCGGGGCCTGGTGAATGTGGCTGCCAAGCTGCACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTTGTGGAGAAGgtaaccagtcctgtcctcaaccacccctggtccccatcctgctgtcccta #### Fibp_ID1012_9 --> 0 - 2 Original Alignment TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTC-TTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCcg cctgcatctaagcagtcctagtggtgccctgaacatgtcccctcctctagTTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCcggtaagtgacgccaagcctgctggctaacttccttggcctccatgagactc Alignment from CESAR TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTC-TTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCcg cctgcatctaagcagtcctagtggtgccctgaacatgtcccctcctctagTTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCcggtaagtgacgccaagcctgctggctaacttccttggcctccatgagactc Alignment from Spaln_aa2Genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTC-TTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG cctgcatctaagcagtcctagtggtgccctgaacatgtcccctcctctagTTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCcTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCGgtaagtgacgccaagcctgctggctaacttccttggcctccatgagactc Alignment from Spaln_nt2Genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCT-CTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG cctgcatctaagcagtcctagtggtgccctgaacatgtcccctcctctagTTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCGgtaagtgacgccaagcctgctggctaacttccttggcctccatgagactc Alignment from Pairagon TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCT-CTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG cctgcatctaagcagtcctagtggtgccctgaacatgtcccctcctctagTTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCGgtaagtgacgccaagcctgctggctaacttccttggcctccatgagactc Alignment from Exonerate_protein2genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTC-TTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG cctgcatctaagcagtcctagtggtgccctgaacatgtcccctcctctagTTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCGgtaagtgacgccaagcctgctggctaacttccttggcctccatgagactc Alignment from Exonerate_coding2genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTC-TTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG cctgcatctaagcagtcctagtggtgccctgaacatgtcccctcctctagTTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCGgtaagtgacgccaagcctgctggctaacttccttggcctccatgagactc Alignment from GeneWise TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGG-CTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCG cctgcatctaagcagtcctagtggtgccctgaacatgtcccctcctctagTTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTTCCGgtaagtgacgccaagcctgctggctaacttccttggcctccatgagactc #### Fkbp2_ID1945_4 --> 2 - 1 Original Alignment ggTATGGAGAGCGGGGA-GCCCCCCCAAAGATCCCAg gt agaagggagcctggccacaacttaactctggtaagagttcttttctgcagggTATGGAGAGCGGGGACGCCCCCCCAAAGATCCCAggtatggcccctaccaccctcactccaattgatttatattttctttcaggt Alignment from CESAR ggTATGGAGAGCGGGGA-GCCCCCCCAAAGATCCCAg gt agaagggagcctggccacaacttaactctggtaagagttcttttctgcagggTATGGAGAGCGGGGACGCCCCCCCAAAGATCCCAggtatggcccctaccaccctcactccaattgttctctctgttgttcaaggt Alignment from Spaln_aa2Genome GGTATGGAGAGCGGGGAGCCCCCCCAAAGATCCCA------G GT agaagggagcctggccacaacttaactctggtaagagttcttttctgcagGGTATGGAGAGCGGGGACGCCCCCCCAAAGATCCCAGGTATGgcccctaccaccctcactccaattgatttatattttctttcagGT Alignment from Spaln_nt2Genome GGTATGGAGAGCGGGGA-GCCCCCCCAAAGATCCCAG GT agaagggagcctggccacaacttaactctggtaagagttcttttctgcagGGTATGGAGAGCGGGGACGCCCCCCCAAAGATCCCAGgtatggcccctaccaccctcactccaattgatttatattttctttcagGT Alignment from Pairagon GGTATGGAGAGCGGGGA-GCCCCCCCAAAGATCCCAG GT agaagggagcctggccacaacttaactctggtaagagttcttttctgcagGGTATGGAGAGCGGGGACGCCCCCCCAAAGATCCCAGgtatggcccctaccaccctcactccaattgatttatattttctttcagGT Alignment from Exonerate_protein2genome GGTATGGAGAGCGGGGA-GCCCCCCCAAAGATCCCAG GT agaagggagcctggccacaacttaactctggtaagagttcttttctgcagGGTATGGAGAGCGGGGACGCCCCCCCAAAGATCCCAGgtatggcccctaccaccctcactccaattgatttatattttctttcagGT Alignment from Exonerate_coding2genome GGTATGGAGAGCGGGGA-GCCCCCCCAAAGATCCCAG GT agaagggagcctggccacaacttaactctggtaagagttcttttctgcagGGTATGGAGAGCGGGGACGCCCCCCCAAAGATCCCAGgtatggcccctaccaccctcactccaattgatttatattttctttcagGT Alignment from GeneWise GGGA---GCCCCCCCAAAGATCCCAGGT------------------------------------------------ agaagggagcctggccacaacttaactctggtaagagttcttttctgcagggtatggagagCGGGGACGCCCCCCCAAAGATCCCAGGTATGGCCCCTACCACCCTCACTCCAATTGATTTATATTTTCTTTCAGGT #### Fkbp2_ID1947_2 --> 0 - 2 Original Alignment GGAAAGCTAGAA-GATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGgg gaagggttgtggagcaacctctccttactttaaatgtaatttctttacagGGAAAGCTAGAACGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGgggtaagtctggtctggggtacatgttgtagtgagtgatccagcaagtgagc Alignment from CESAR GGAAAGCTAGAA-GATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGgg gaagggttgtggagcaacctctccttactttaaatgtaatttctttacagGGAAAGCTAGAACGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGgggtaagtctggtctggggtacatgttgtagtgagtgatccagcaagtgagc Alignment from Spaln_aa2Genome GGAAAGCTAGAA-GATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gaagggttgtggagcaacctctccttactttaaatgtaatttctttacagGGAAAGCTAGAAcGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGGgtaagtctggtctggggtacatgttgtagtgagtgatccagcaagtgagc Alignment from Spaln_nt2Genome GGAAAGCTAGAA-GATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gaagggttgtggagcaacctctccttactttaaatgtaatttctttacagGGAAAGCTAGAACGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGGgtaagtctggtctggggtacatgttgtagtgagtgatccagcaagtgagc Alignment from Pairagon GGAAAGCTAGAA-GATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gaagggttgtggagcaacctctccttactttaaatgtaatttctttacagGGAAAGCTAGAACGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGGgtaagtctggtctggggtacatgttgtagtgagtgatccagcaagtgagc Alignment from Exonerate_protein2genome GGAAAGCTAGAA-GATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gaagggttgtggagcaacctctccttactttaaatgtaatttctttacagGGAAAGCTAGAACGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGGgtaagtctggtctggggtacatgttgtagtgagtgatccagcaagtgagc Alignment from Exonerate_coding2genome GGAAAGCTAGAA-GATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gaagggttgtggagcaacctctccttactttaaatgtaatttctttacagGGAAAGCTAGAACGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGGgtaagtctggtctggggtacatgttgtagtgagtgatccagcaagtgagc Alignment from GeneWise ---GATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gaagggttgtggagcaacctctccttactttaaatgtaatttctttacagggaaagctagAACGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGGgtaagtctggtctggggtacatgttgtagtgagtgatccagcaagtgagc #### Frmd8_ID1284_4 --> 2 - 0 Original Alignment atGAGCCTTCCCTTCAGTTC-CGAAGGAATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG agctgccttaaccaaggggaccagaaaaatagatggccttttttttccagatGAGCCTTCCCTTCAGTTCCCGAAGGAATGTTTTTTTCCCAAGGCGGCGAGAGCTCCAGgtatcccggggctcaggcagtatcaaagggttcctgcatgccagtgccca Alignment from CESAR atGAGCCTTCCCTTCAGTTC-CGAAGGAATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG agctgccttaaccaaggggaccagaaaaatagatggccttttttttccagatGAGCCTTCCCTTCAGTTCCCGAAGGAATGTTTTTTTCCCAAGGCGGCGAGAGCTCCAGgtatcccggggctcaggcagtatcaaagggttcctgcatgccagtgccca Alignment from Spaln_aa2Genome ATGAGCCTTCCCTTCAGTTC-CGAAGGAATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG agctgccttaaccaaggggaccagaaaaatagatggccttttttttccagATGAGCCTTCCCTTCAGTTCcCGAAGGAATGTTTTTTTCCCAAGGCGGCGAGAGCTCCAGgtatcccggggctcaggcagtatcaaagggttcctgcatgccagtgccca Alignment from Spaln_nt2Genome ATGAGCCTTCCCTTCAGTT-CCGAAGGAATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG agctgccttaaccaaggggaccagaaaaatagatggccttttttttccagATGAGCCTTCCCTTCAGTTCCCGAAGGAATGTTTTTTTCCCAAGGCGGCGAGAGCTCCAGgtatcccggggctcaggcagtatcaaagggttcctgcatgccagtgccca Alignment from Pairagon ATGAGCCTTCCCTTCAGTT-CCGAAGGAATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG agctgccttaaccaaggggaccagaaaaatagatggccttttttttccagATGAGCCTTCCCTTCAGTTCCCGAAGGAATGTTTTTTTCCCAAGGCGGCGAGAGCTCCAGgtatcccggggctcaggcagtatcaaagggttcctgcatgccagtgccca Alignment from Exonerate_protein2genome ATGAGCCTTCCCTTCAGTTC-CGAAGGAATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG agctgccttaaccaaggggaccagaaaaatagatggccttttttttccagATGAGCCTTCCCTTCAGTTCCCGAAGGAATGTTTTTTTCCCAAGGCGGCGAGAGCTCCAGgtatcccggggctcaggcagtatcaaagggttcctgcatgccagtgccca Alignment from Exonerate_coding2genome ATGAGCCTTCCCTTCAGTTC-CGAAGGAATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG agctgccttaaccaaggggaccagaaaaatagatggccttttttttccagATGAGCCTTCCCTTCAGTTCCCGAAGGAATGTTTTTTTCCCAAGGCGGCGAGAGCTCCAGgtatcccggggctcaggcagtatcaaagggttcctgcatgccagtgccca Alignment from GeneWise CCTTCAGTTC------CGAAGGAATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG agctgccttaaccaaggggaccagaaaaatagatggccttttttttccagatgagCCTTCCCTTCAGTTCCCGAAGGAATGTTTTTTTCCCAAGGCGGCGAGAGCTCCAGgtatcccggggctcaggcagtatcaaagggttcctgcatgccagtgccca #### Fth1_ID2624_3 --> 0 - 0 Original Alignment AAACCAGACCGTGATGACTGGGAGAGCGGG-CTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC ctggcttgggctgatgattggtagatgactgccttttctccactccccagAAACCAGACCGTGATGATTGGGAGAGTGGGCCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAATTGCACAAACTGGCTACTGACAAGAATGATCCCCATgtcagcattggaaacatgggatgagtggaggagatgatttgccgcaggac Alignment from CESAR AAACCAGACCGTGATGACTGGGAGAGCGGG-CTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC ctggcttgggctgatgattggtagatgactgccttttctccactccccagAAACCAGACCGTGATGATTGGGAGAGTGGGCCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAATTGCACAAACTGGCTACTGACAAGAATGATCCCCATgtcagcattggaaacatgggatgagtggaggagatgatttgccgcaggac Alignment from Spaln_aa2Genome AAACCAGACCGTGATGACTGGGAGAGC-GGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC ctggcttgggctgatgattggtagatgactgccttttctccactccccagAAACCAGACCGTGATGATTGGGAGAGTgGGCCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAATTGCACAAACTGGCTACTGACAAGAATGATCCCCATgtcagcattggaaacatgggatgagtggaggagatgatttgccgcaggac Alignment from Spaln_nt2Genome AAACCAGACCGTGATGACTGGGAGAGCGGGC-TGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC ctggcttgggctgatgattggtagatgactgccttttctccactccccagAAACCAGACCGTGATGATTGGGAGAGTGGGCCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAATTGCACAAACTGGCTACTGACAAGAATGATCCCCATgtcagcattggaaacatgggatgagtggaggagatgatttgccgcaggac Alignment from Pairagon AAACCAGACCGTGATGACTGGGAGAGCGGG-CTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC ctggcttgggctgatgattggtagatgactgccttttctccactccccagAAACCAGACCGTGATGATTGGGAGAGTGGGCCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAATTGCACAAACTGGCTACTGACAAGAATGATCCCCATgtcagcattggaaacatgggatgagtggaggagatgatttgccgcaggac Alignment from Exonerate_protein2genome AAACCAGACCGTGATGACTGGGAGAGC-GGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC ctggcttgggctgatgattggtagatgactgccttttctccactccccagAAACCAGACCGTGATGATTGGGAGAGTGGGCCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAATTGCACAAACTGGCTACTGACAAGAATGATCCCCATgtcagcattggaaacatgggatgagtggaggagatgatttgccgcaggac Alignment from Exonerate_coding2genome AAACCAGACCGTGATGACTGGGAGAGC-GGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC ctggcttgggctgatgattggtagatgactgccttttctccactccccagAAACCAGACCGTGATGATTGGGAGAGTGGGCCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAATTGCACAAACTGGCTACTGACAAGAATGATCCCCATgtcagcattggaaacatgggatgagtggaggagatgatttgccgcaggac Alignment from GeneWise AAACCAGACCGTGATGACTGGGAG-AGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACTGACAAGAATGATCCCCAC ctggcttgggctgatgattggtagatgactgccttttctccactccccagAAACCAGACCGTGATGATTGGGAGAGTGGGCCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAATTGCACAAACTGGCTACTGACAAGAATGATCCCCATgtcagcattggaaacatgggatgagtggaggagatgatttgccgcaggac #### Ganab_ID2469_8 --> 0 - 1 Original Alignment CCAGAGGAGACCCAGGAA-AAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATg gggaaaagataactgggacgttagtgggtggaactctgcctaccccacagCCAGAGGAGACCCAGGAACAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATggtgagtgactgggcaagccttaggcattaccaaacagaagtgcaattatg Alignment from CESAR CCAGAGGAGACCCAGGAA-AAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATg gggaaaagataactgggacgttagtgggtggaactctgcctaccccacagCCAGAGGAGACCCAGGAACAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATggtgagtgactgggcaagccttaggcattaccaaacagaagtgctgctgac Alignment from Spaln_aa2Genome CCAGAGGAGACCCAGGAA-AAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG gggaaaagataactgggacgttagtgggtggaactctgcctaccccacagCCAGAGGAGACCCAGGAAcAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtgagtgactgggcaagccttaggcattaccaaacagaagtgcaattatg Alignment from Spaln_nt2Genome CCAGAGGAGACCCAGGAA-AAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG gggaaaagataactgggacgttagtgggtggaactctgcctaccccacagCCAGAGGAGACCCAGGAACAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtgagtgactgggcaagccttaggcattaccaaacagaagtgcaattatg Alignment from Pairagon CCAGAGGAGACCCAGGAA-AAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG gggaaaagataactgggacgttagtgggtggaactctgcctaccccacagCCAGAGGAGACCCAGGAACAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtgagtgactgggcaagccttaggcattaccaaacagaagtgcaattatg Alignment from Exonerate_protein2genome CCAGAGGAGACCCAGGAA-AAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG gggaaaagataactgggacgttagtgggtggaactctgcctaccccacagCCAGAGGAGACCCAGGAACAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtgagtgactgggcaagccttaggcattaccaaacagaagtgcaattatg Alignment from Exonerate_coding2genome CCAGAGGAGACCCAGGAA-AAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG gggaaaagataactgggacgttagtgggtggaactctgcctaccccacagCCAGAGGAGACCCAGGAACAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtgagtgactgggcaagccttaggcattaccaaacagaagtgcaattatg Alignment from GeneWise ------CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG gggaaaagataactgggacgttagtgggtggaactctgcctaccccacagccagAGGAGACCC---------AGGAACAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtgagtgactgggcaagccttaggcattaccaaacagaagtgcaattatg #### Ganab_ID2473_12 --> 2 - 0 Original Alignment ggACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGAT-GTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG cttaagttttgctctttcttcagccccaggagataaatgtgtcattctagggACCCAGGCATTGCCCCCACTCTTCTCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGGGATGAGGCTGATCGTTTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCTTGTGATGTCATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTCCCCCAGCCCCTCAATATGCTTGATCACTTGGCTTCCAAGAGGCGGAAGgtaagagggtgctgtagctgtgagaggtcttcttgtatagggttgaggca Alignment from CESAR ggACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGAT-GTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG cttaagttttgctctttcttcagccccaggagataaatgtgtcattctagggACCCAGGCATTGCCCCCACTCTTCTCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGGGATGAGGCTGATCGTTTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCTTGTGATGTCATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTCCCCCAGCCCCTCAATATGCTTGATCACTTGGCTTCCAAGAGGCGGAAGgtaagagggtgctgtagctgtgagaggtcttcttgtatagggttgaggca Alignment from Spaln_aa2Genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGAT-GTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG cttaagttttgctctttcttcagccccaggagataaatgtgtcattctagGGACCCAGGCATTGCCCCCACTCTTCTCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGGGATGAGGCTGATcGTTTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCTTGTGATGTCATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTCCCCCAGCCCCTCAATATGCTTGATCACTTGGCTTCCAAGAGGCGGAAGgtaagagggtgctgtagctgtgagaggtcttcttgtatagggttgaggca Alignment from Spaln_nt2Genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGAT-GTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG cttaagttttgctctttcttcagccccaggagataaatgtgtcattctagGGACCCAGGCATTGCCCCCACTCTTCTCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGGGATGAGGCTGATCGTTTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCTTGTGATGTCATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTCCCCCAGCCCCTCAATATGCTTGATCACTTGGCTTCCAAGAGGCGGAAGgtaagagggtgctgtagctgtgagaggtcttcttgtatagggttgaggca Alignment from Pairagon GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGAT-GTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG cttaagttttgctctttcttcagccccaggagataaatgtgtcattctagGGACCCAGGCATTGCCCCCACTCTTCTCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGGGATGAGGCTGATCGTTTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCTTGTGATGTCATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTCCCCCAGCCCCTCAATATGCTTGATCACTTGGCTTCCAAGAGGCGGAAGgtaagagggtgctgtagctgtgagaggtcttcttgtatagggttgaggca Alignment from Exonerate_protein2genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGAT-GTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG cttaagttttgctctttcttcagccccaggagataaatgtgtcattctagGGACCCAGGCATTGCCCCCACTCTTCTCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGGGATGAGGCTGATCGTTTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCTTGTGATGTCATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTCCCCCAGCCCCTCAATATGCTTGATCACTTGGCTTCCAAGAGGCGGAAGgtaagagggtgctgtagctgtgagaggtcttcttgtatagggttgaggca Alignment from Exonerate_coding2genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGAT-GTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG cttaagttttgctctttcttcagccccaggagataaatgtgtcattctagGGACCCAGGCATTGCCCCCACTCTTCTCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGGGATGAGGCTGATCGTTTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCTTGTGATGTCATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTCCCCCAGCCCCTCAATATGCTTGATCACTTGGCTTCCAAGAGGCGGAAGgtaagagggtgctgtagctgtgagaggtcttcttgtatagggttgaggca Alignment from GeneWise GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGAT-GTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG cttaagttttgctctttcttcagccccaggagataaatgtgtcattctagGGACCCAGGCATTGCCCCCACTCTTCTCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGGGATGAGGCTGATCGTTTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCTTGTGATGTCATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTCCCCCAGCCCCTCAATATGCTTGATCACTTGGCTTCCAAGAGGCGGAAGgtaagagggtgctgtagctgtgagaggtcttcttgtatagggttgaggca #### Ganab_ID2474_13 --> 0 - 1 Original Alignment CTGGTGGCCATTGTGGACCCCCACATCAAGGTA------GACTCTGGCTACCGAGTTCACGAAGAATTG-CGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAg ggcatggcatggtagtctcgaccatttctgaccttctgtgttattttcagCTAGTGGCCATTGTGGACCCCCACATCAAGGTCAAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTACCAAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAggttagtagctggaggggaggctatgaagcagtcaaagaggtagagatatt Alignment from CESAR CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTG-CGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAg ggcatggcatggtagtctcgaccatttctgaccttctgtgttattttcagCTAGTGGCCATTGTGGACCCCCACATCAAGGTCAAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTACCAAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAggttagtagctggaggggaggctatgaagcagtcaaagaggtagagatatt Alignment from Spaln_aa2Genome CTGGTGGCCATTGTGGACCCCCAC------ATCAAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTG-CGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggcatggcatggtagtctcgaccatttctgaccttctgtgttattttcagCTAGTGGCCATTGTGGACCCCCACATCAAGGTCAAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTAcCAAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAGgttagtagctggaggggaggctatgaagcagtcaaagaggtagagatatt Alignment from Spaln_nt2Genome CTGGTGGCCATTGTGGACCCCCACA------TCAAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAA-CCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggcatggcatggtagtctcgaccatttctgaccttctgtgttattttcagCTAGTGGCCATTGTGGACCCCCACATCAAGGTCAAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTACCAAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAGgttagtagctggaggggaggctatgaagcagtcaaagaggtagagatatt Alignment from Pairagon CTGGTGGCCATTGTGGACCCCCACA------TCAAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTG-CGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggcatggcatggtagtctcgaccatttctgaccttctgtgttattttcagCTAGTGGCCATTGTGGACCCCCACATCAAGGTCAAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTACCAAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAGgttagtagctggaggggaggctatgaagcagtcaaagaggtagagatatt Alignment from Exonerate_protein2genome CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTG-CGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggcatggcatggtagtctcgaccatttctgaccttctgtgttattttcagCTAGTGGCCATTGTGGACCCCCACATCAAGGTCAAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTACCAAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAGgttagtagctggaggggaggctatgaagcagtcaaagaggtagagatatt Alignment from Exonerate_coding2genome CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTG-CGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggcatggcatggtagtctcgaccatttctgaccttctgtgttattttcagCTAGTGGCCATTGTGGACCCCCACATCAAGGTCAAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTACCAAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAGgttagtagctggaggggaggctatgaagcagtcaaagaggtagagatatt Alignment from GeneWise CTGGTGGCCATTGTGGACCCCCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTG-CGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG ggcatggcatggtagtctcgaccatttctgaccttctgtgttattttcagCTAGTGGCCATTGTGGACCCCCACATCAAGGTCAAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTACCAAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAGgttagtagctggaggggaggctatgaagcagtcaaagaggtagagatatt #### Ganab_ID2477_16 --> 0 - 1 Original Alignment CACATGGCGACTGCTGATGGGCTAATACAGCGCTCT-GGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTg accagaagacagatggcatttgttcttcccctgggcaatactctctgcagCACATGGCAACTGCTGATGGGCTAATACAGCGCTCTCGGGGGCATAGAGCGTCCCTTTGTGCTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTggtgaggtttggagactagagctgtggcaaccatgtgtgggagtaaatgcc Alignment from CESAR CACATGGCGACTGCTGATGGGCTAATACAGCGCTCT-GGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTg accagaagacagatggcatttgttcttcccctgggcaatactctctgcagCACATGGCAACTGCTGATGGGCTAATACAGCGCTCTCGGGGGCATAGAGCGTCCCTTTGTGCTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTggtgaggtttggagactagagctgtggcaaccatgtgtgggagtaaatgcc Alignment from Spaln_aa2Genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGC-ATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaagacagatggcatttgttcttcccctgggcaatactctctgcagCACATGGCAACTGCTGATGGGCTAATACAGCGCTCTCGGGGGcATAGAGCGTCCCTTTGTGCTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtgaggtttggagactagagctgtggcaaccatgtgtgggagtaaatgcc Alignment from Spaln_nt2Genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTG-GGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaagacagatggcatttgttcttcccctgggcaatactctctgcagCACATGGCAACTGCTGATGGGCTAATACAGCGCTCTCGGGGGCATAGAGCGTCCCTTTGTGCTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtgaggtttggagactagagctgtggcaaccatgtgtgggagtaaatgcc Alignment from Pairagon CACATGGCGACTGCTGATGGGCTAATACAGCGCTCT-GGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaagacagatggcatttgttcttcccctgggcaatactctctgcagCACATGGCAACTGCTGATGGGCTAATACAGCGCTCTCGGGGGCATAGAGCGTCCCTTTGTGCTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtgaggtttggagactagagctgtggcaaccatgtgtgggagtaaatgcc Alignment from Exonerate_protein2genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCT-GGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaagacagatggcatttgttcttcccctgggcaatactctctgcagCACATGGCAACTGCTGATGGGCTAATACAGCGCTCTCGGGGGCATAGAGCGTCCCTTTGTGCTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtgaggtttggagactagagctgtggcaaccatgtgtgggagtaaatgcc Alignment from Exonerate_coding2genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCT-GGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaagacagatggcatttgttcttcccctgggcaatactctctgcagCACATGGCAACTGCTGATGGGCTAATACAGCGCTCTCGGGGGCATAGAGCGTCCCTTTGTGCTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtgaggtttggagactagagctgtggcaaccatgtgtgggagtaaatgcc Alignment from GeneWise CACATGGCGACTGCTGATGGGCTAATACAGCGC-TCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaagacagatggcatttgttcttcccctgggcaatactctctgcagCACATGGCAACTGCTGATGGGCTAATACAGCGCTCTCGGGGGCATAGAGCGTCCCTTTGTGCTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtgaggtttggagactagagctgtggcaaccatgtgtgggagtaaatgcc #### Ganab_ID2482_21 --> 0 - 0 Original Alignment GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACC-TTGTATCTGCCAGTAACTTTGAGCAGT aagcatggaacccctatgcactgggtgactgcctgtgttttctttacaagGTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCCTTGTATCTGCCAGTAACTTTGAGCAGTgtaagtatatctctctagctgccatctctgtttgcttgtccttctccaga Alignment from CESAR GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACC-TTGTATCTGCCAGTAACTTTGAGCAGT aagcatggaacccctatgcactgggtgactgcctgtgttttctttacaagGTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCCTTGTATCTGCCAGTAACTTTGAGCAGTgtaagtatatctctctagctgccatctctgtttgcttgtccttctccaga Alignment from Spaln_aa2Genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTG-TATCTGCCAGTAACTTTGAGCAGT aagcatggaacccctatgcactgggtgactgcctgtgttttctttacaagGTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCCTTgTATCTGCCAGTAACTTTGAGCAGTgtaagtatatctctctagctgccatctctgtttgcttgtccttctccaga Alignment from Spaln_nt2Genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGA-CCTTGTATCTGCCAGTAACTTTGAGCAGT aagcatggaacccctatgcactgggtgactgcctgtgttttctttacaagGTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCCTTGTATCTGCCAGTAACTTTGAGCAGTgtaagtatatctctctagctgccatctctgtttgcttgtccttctccaga Alignment from Pairagon GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGA-CCTTGTATCTGCCAGTAACTTTGAGCAGT aagcatggaacccctatgcactgggtgactgcctgtgttttctttacaagGTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCCTTGTATCTGCCAGTAACTTTGAGCAGTgtaagtatatctctctagctgccatctctgtttgcttgtccttctccaga Alignment from Exonerate_protein2genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACC-TTGTATCTGCCAGTAACTTTGAGCAGT aagcatggaacccctatgcactgggtgactgcctgtgttttctttacaagGTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCCTTGTATCTGCCAGTAACTTTGAGCAGTgtaagtatatctctctagctgccatctctgtttgcttgtccttctccaga Alignment from Exonerate_coding2genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACC-TTGTATCTGCCAGTAACTTTGAGCAGT aagcatggaacccctatgcactgggtgactgcctgtgttttctttacaagGTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCCTTGTATCTGCCAGTAACTTTGAGCAGTgtaagtatatctctctagctgccatctctgtttgcttgtccttctccaga Alignment from GeneWise GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACC-TTGTATCTGCCAGTAACTTTGAGCAGT aagcatggaacccctatgcactgggtgactgcctgtgttttctttacaagGTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCCTTGTATCTGCCAGTAACTTTGAGCAGTgtaagtatatctctctagctgccatctctgtttgcttgtccttctccaga #### Ganab_ID2483_22 --> 0 - 0 Original Alignment ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATC-ACTCTCTTTGTTGCTCTCAGTCCCCAG gcttgaaaggcttgaaggagtagtgctttctgattctttatcctctttagATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCCACTCTCTTTGTTGCTCTCAGTCCCCAGgtaagattccagtggacgagagctgtctcaaccattgtctgtcttctagg Alignment from CESAR ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATC-ACTCTCTTTGTTGCTCTCAGTCCCCAG gcttgaaaggcttgaaggagtagtgctttctgattctttatcctctttagATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCCACTCTCTTTGTTGCTCTCAGTCCCCAGgtaagattccagtggacgagagctgtctcaaccattgtctgtcttctagg Alignment from Spaln_aa2Genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATC-ACTCTCTTTGTTGCTCTCAGTCCCCAG gcttgaaaggcttgaaggagtagtgctttctgattctttatcctctttagATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCcACTCTCTTTGTTGCTCTCAGTCCCCAGgtaagattccagtggacgagagctgtctcaaccattgtctgtcttctagg Alignment from Spaln_nt2Genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTAT-CACTCTCTTTGTTGCTCTCAGTCCCCAG gcttgaaaggcttgaaggagtagtgctttctgattctttatcctctttagATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCCACTCTCTTTGTTGCTCTCAGTCCCCAGgtaagattccagtggacgagagctgtctcaaccattgtctgtcttctagg Alignment from Pairagon ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTAT-CACTCTCTTTGTTGCTCTCAGTCCCCAG gcttgaaaggcttgaaggagtagtgctttctgattctttatcctctttagATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCCACTCTCTTTGTTGCTCTCAGTCCCCAGgtaagattccagtggacgagagctgtctcaaccattgtctgtcttctagg Alignment from Exonerate_protein2genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATC-ACTCTCTTTGTTGCTCTCAGTCCCCAG gcttgaaaggcttgaaggagtagtgctttctgattctttatcctctttagATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCCACTCTCTTTGTTGCTCTCAGTCCCCAGgtaagattccagtggacgagagctgtctcaaccattgtctgtcttctagg Alignment from Exonerate_coding2genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATC-ACTCTCTTTGTTGCTCTCAGTCCCCAG gcttgaaaggcttgaaggagtagtgctttctgattctttatcctctttagATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCCACTCTCTTTGTTGCTCTCAGTCCCCAGgtaagattccagtggacgagagctgtctcaaccattgtctgtcttctagg Alignment from GeneWise ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCT-ATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcttgaaaggcttgaaggagtagtgctttctgattctttatcctctttagATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCCACTCTCTTTGTTGCTCTCAGTCCCCAGgtaagattccagtggacgagagctgtctcaaccattgtctgtcttctagg #### Gbf1_ID9795_14 --> 0 - 1 Original Alignment AATGCCTTTCCTGTGTCTGGTCAGCTTTATACA-ACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGt aggtgaagtatattcctacctcaagtctagacttcccttttcttcccaagAATGCCTTCCCTGTATCTGGTCAGCTTTATACACACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTCTCAGGCCAAAGTCCTCAATACCCTCAACCAGCAAGAGAAGAAAGAGACAGCTAGACCTGGCTTTGAGGCAGTGGACGGCAACCCAGAAACTAACAAGtgtaagcagcatcttatattgttcttattctttttcttttttgtccttact Alignment from CESAR AATGCCTTTCCTGTGTCTGGTCAGCTTTATACA-ACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGt aggtgaagtatattcctacctcaagtctagacttcccttttcttcccaagAATGCCTTCCCTGTATCTGGTCAGCTTTATACACACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTCTCAGGCCAAAGTCCTCAATACCCTCAACCAGCAAGAGAAGAAAGAGACAGCTAGACCTGGCTTTGAGGCAGTGGACGGCAACCCAGAAACTAACAAGtgtaagcagcatcttatattgttcttattctttttcttttttgtccttact Alignment from Spaln_aa2Genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACA-ACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT aggtgaagtatattcctacctcaagtctagacttcccttttcttcccaagAATGCCTTCCCTGTATCTGGTCAGCTTTATACAcACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTCTCAGGCCAAAGTCCTCAATACCCTCAACCAGCAAGAGAAGAAAGAGACAGCTAGACCTGGCTTTGAGGCAGTGGACGGCAACCCAGAAACTAACAAGTgtaagcagcatcttatattgttcttattctttttcttttttgtccttact Alignment from Spaln_nt2Genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACA-ACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT aggtgaagtatattcctacctcaagtctagacttcccttttcttcccaagAATGCCTTCCCTGTATCTGGTCAGCTTTATACACACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTCTCAGGCCAAAGTCCTCAATACCCTCAACCAGCAAGAGAAGAAAGAGACAGCTAGACCTGGCTTTGAGGCAGTGGACGGCAACCCAGAAACTAACAAGTgtaagcagcatcttatattgttcttattctttttcttttttgtccttact Alignment from Pairagon AATGCCTTTCCTGTGTCTGGTCAGCTTTATACA-ACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT aggtgaagtatattcctacctcaagtctagacttcccttttcttcccaagAATGCCTTCCCTGTATCTGGTCAGCTTTATACACACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTCTCAGGCCAAAGTCCTCAATACCCTCAACCAGCAAGAGAAGAAAGAGACAGCTAGACCTGGCTTTGAGGCAGTGGACGGCAACCCAGAAACTAACAAGTgtaagcagcatcttatattgttcttattctttttcttttttgtccttact Alignment from Exonerate_protein2genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACA-ACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT aggtgaagtatattcctacctcaagtctagacttcccttttcttcccaagAATGCCTTCCCTGTATCTGGTCAGCTTTATACACACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTCTCAGGCCAAAGTCCTCAATACCCTCAACCAGCAAGAGAAGAAAGAGACAGCTAGACCTGGCTTTGAGGCAGTGGACGGCAACCCAGAAACTAACAAGTgtaagcagcatcttatattgttcttattctttttcttttttgtccttact Alignment from Exonerate_coding2genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACA-ACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT aggtgaagtatattcctacctcaagtctagacttcccttttcttcccaagAATGCCTTCCCTGTATCTGGTCAGCTTTATACACACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTCTCAGGCCAAAGTCCTCAATACCCTCAACCAGCAAGAGAAGAAAGAGACAGCTAGACCTGGCTTTGAGGCAGTGGACGGCAACCCAGAAACTAACAAGTgtaagcagcatcttatattgttcttattctttttcttttttgtccttact Alignment from GeneWise AATGCCTTTCCTGTGTCTGGTCAGCTTTATACA-ACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT aggtgaagtatattcctacctcaagtctagacttcccttttcttcccaagAATGCCTTCCCTGTATCTGGTCAGCTTTATACACACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTCTCAGGCCAAAGTCCTCAATACCCTCAACCAGCAAGAGAAGAAAGAGACAGCTAGACCTGGCTTTGAGGCAGTGGACGGCAACCCAGAAACTAACAAGTgtaagcagcatcttatattgttcttattctttttcttttttgtccttact #### Gbf1_ID9799_18 --> 1 - 0 Original Alignment cACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCAC-AGGTTGCTGGAGGTATTCACTGAGCACTGGAGG acacagtattaaagtcttcagtcttttcctctctgctctcttgttcccagcACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTAGAAGCCTTCCGTTTGCCTGGGGAAGCACCCCTTATTCACCAGGTTGCTGGAGGTATTCACTGAGCACTGGAGGgtaaggtgtagtgtcagaaacagtgtcacagatccccgatcagattgagg Alignment from CESAR cACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCAC-AGGTTGCTGGAGGTATTCACTGAGCACTGGAGG acacagtattaaagtcttcagtcttttcctctctgctctcttgttcccagcACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTAGAAGCCTTCCGTTTGCCTGGGGAAGCACCCCTTATTCACCAGGTTGCTGGAGGTATTCACTGAGCACTGGAGGgtaaggtgtagtgtcagaaacagtgtcacagatccccgatcagattgagg Alignment from Spaln_aa2Genome CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCAC-AGGTTGCTGGAGGTATTCACTGAGCACTGGAGG acacagtattaaagtcttcagtcttttcctctctgctctcttgttcccagCACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTAGAAGCCTTCCGTTTGCCTGGGGAAGCACCCCTTATTCACcAGGTTGCTGGAGGTATTCACTGAGCACTGGAGGgtaaggtgtagtgtcagaaacagtgtcacagatccccgatcagattgagg Alignment from Spaln_nt2Genome CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCA-CAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG acacagtattaaagtcttcagtcttttcctctctgctctcttgttcccagCACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTAGAAGCCTTCCGTTTGCCTGGGGAAGCACCCCTTATTCACCAGGTTGCTGGAGGTATTCACTGAGCACTGGAGGgtaaggtgtagtgtcagaaacagtgtcacagatccccgatcagattgagg Alignment from Pairagon CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCA-CAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG acacagtattaaagtcttcagtcttttcctctctgctctcttgttcccagCACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTAGAAGCCTTCCGTTTGCCTGGGGAAGCACCCCTTATTCACCAGGTTGCTGGAGGTATTCACTGAGCACTGGAGGgtaaggtgtagtgtcagaaacagtgtcacagatccccgatcagattgagg Alignment from Exonerate_protein2genome CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCAC-AGGTTGCTGGAGGTATTCACTGAGCACTGGAGG acacagtattaaagtcttcagtcttttcctctctgctctcttgttcccagCACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTAGAAGCCTTCCGTTTGCCTGGGGAAGCACCCCTTATTCACCAGGTTGCTGGAGGTATTCACTGAGCACTGGAGGgtaaggtgtagtgtcagaaacagtgtcacagatccccgatcagattgagg Alignment from Exonerate_coding2genome CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCAC-AGGTTGCTGGAGGTATTCACTGAGCACTGGAGG acacagtattaaagtcttcagtcttttcctctctgctctcttgttcccagCACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTAGAAGCCTTCCGTTTGCCTGGGGAAGCACCCCTTATTCACCAGGTTGCTGGAGGTATTCACTGAGCACTGGAGGgtaaggtgtagtgtcagaaacagtgtcacagatccccgatcagattgagg Alignment from GeneWise CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCAC-AGGTTGCTGGAGGTATTCACTGAGCACTGGAGG acacagtattaaagtcttcagtcttttcctctctgctctcttgttcccagCACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTAGAAGCCTTCCGTTTGCCTGGGGAAGCACCCCTTATTCACCAGGTTGCTGGAGGTATTCACTGAGCACTGGAGGgtaaggtgtagtgtcagaaacagtgtcacagatccccgatcagattgagg #### Gbf1_ID9800_19 --> 0 - 0 Original Alignment AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCC-CTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG ttagttgtcggaaaaggacattaacacaaccctctctctgtgtctcacagAGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCCTAGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAGgtacagttgaaacagaagatccaatacagctttgaaagtgtcaacaacaa Alignment from CESAR AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCC-CTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG ttagttgtcggaaaaggacattaacacaaccctctctctgtgtctcacagAGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCCTAGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAGgtacagttgaaacagaagatccaatacagctttgaaagtgtcaacaacaa Alignment from Spaln_aa2Genome AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCC-CTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG ttagttgtcggaaaaggacattaacacaaccctctctctgtgtctcacagAGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCcCTAGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAGgtacagttgaaacagaagatccaatacagctttgaaagtgtcaacaacaa Alignment from Spaln_nt2Genome AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGC-TTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG ttagttgtcggaaaaggacattaacacaaccctctctctgtgtctcacagAGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCCTAGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAGgtacagttgaaacagaagatccaatacagctttgaaagtgtcaacaacaa Alignment from Pairagon AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTG-CCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG ttagttgtcggaaaaggacattaacacaaccctctctctgtgtctcacagAGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCCTAGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAGgtacagttgaaacagaagatccaatacagctttgaaagtgtcaacaacaa Alignment from Exonerate_protein2genome AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCC-CTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG ttagttgtcggaaaaggacattaacacaaccctctctctgtgtctcacagAGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCCTAGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAGgtacagttgaaacagaagatccaatacagctttgaaagtgtcaacaacaa Alignment from Exonerate_coding2genome AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCC-CTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG ttagttgtcggaaaaggacattaacacaaccctctctctgtgtctcacagAGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCCTAGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAGgtacagttgaaacagaagatccaatacagctttgaaagtgtcaacaacaa Alignment from GeneWise AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTT-GCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG ttagttgtcggaaaaggacattaacacaaccctctctctgtgtctcacagAGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCCTAGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAGgtacagttgaaacagaagatccaatacagctttgaaagtgtcaacaacaa #### Gbf1_ID9803_22 --> 1 - 0 Original Alignment gAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAA-TTCACAGCTCTAAGTAGTGAG gacttagtggcctttcagtgactgtttctctgaaatcttctttcttctaggAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAACTTCACAGCTCTAAGTAGTGAGgtgagttggaacaggaactgtgcttagaggagagtgaacctcagctgtgg Alignment from CESAR gAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAA-TTCACAGCTCTAAGTAGTGAG gacttagtggcctttcagtgactgtttctctgaaatcttctttcttctaggAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAACTTCACAGCTCTAAGTAGTGAGgtgagttggaacaggaactgtgcttagaggagagtgaacctcagctgtgg Alignment from Spaln_aa2Genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAA-TTCACAGCTCTAAGTAGTGAG gacttagtggcctttcagtgactgtttctctgaaatcttctttcttctagGAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAAcTTCACAGCTCTAAGTAGTGAGgtgagttggaacaggaactgtgcttagaggagagtgaacctcagctgtgg Alignment from Spaln_nt2Genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAA-TTCACAGCTCTAAGTAGTGAG gacttagtggcctttcagtgactgtttctctgaaatcttctttcttctagGAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAACTTCACAGCTCTAAGTAGTGAGgtgagttggaacaggaactgtgcttagaggagagtgaacctcagctgtgg Alignment from Pairagon GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAA-TTCACAGCTCTAAGTAGTGAG gacttagtggcctttcagtgactgtttctctgaaatcttctttcttctagGAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAACTTCACAGCTCTAAGTAGTGAGgtgagttggaacaggaactgtgcttagaggagagtgaacctcagctgtgg Alignment from Exonerate_protein2genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAA-TTCACAGCTCTAAGTAGTGAG gacttagtggcctttcagtgactgtttctctgaaatcttctttcttctagGAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAACTTCACAGCTCTAAGTAGTGAGgtgagttggaacaggaactgtgcttagaggagagtgaacctcagctgtgg Alignment from Exonerate_coding2genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAA-TTCACAGCTCTAAGTAGTGAG gacttagtggcctttcagtgactgtttctctgaaatcttctttcttctagGAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAACTTCACAGCTCTAAGTAGTGAGgtgagttggaacaggaactgtgcttagaggagagtgaacctcagctgtgg Alignment from GeneWise GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGC-AAATTCACAGCTCTAAGTAGTGAG gacttagtggcctttcagtgactgtttctctgaaatcttctttcttctagGAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAACTTCACAGCTCTAAGTAGTGAGgtgagttggaacaggaactgtgcttagaggagagtgaacctcagctgtgg #### Gbf1_ID9805_24 --> 0 - 2 Original Alignment GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAG-CGGGAGGAGACACCATCCAACcg agtgctttcaatactgagccatttgccattcaattttcatctttacttagGTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCCGCGAGGAGACACCATCCAACcggtaggcgcagaccagtcactaagagcctagagaaaagtagtagtcagaat Alignment from CESAR GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAG-CGGGAGGAGACACCATCCAACcg agtgctttcaatactgagccatttgccattcaattttcatctttacttagGTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCCGCGAGGAGACACCATCCAACcggtaggcgcagaccagtcactaagagcctagagaaaagtagtagtcagaat Alignment from Spaln_aa2Genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAG-CGGGAGGAGACACCATCCAACCG agtgctttcaatactgagccatttgccattcaattttcatctttacttagGTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGcCGCGAGGAGACACCATCCAACCGgtaggcgcagaccagtcactaagagcctagagaaaagtagtagtcagaat Alignment from Spaln_nt2Genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGG-GAGGAGACACCATCCAACCG agtgctttcaatactgagccatttgccattcaattttcatctttacttagGTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCCGCGAGGAGACACCATCCAACCGgtaggcgcagaccagtcactaagagcctagagaaaagtagtagtcagaat Alignment from Pairagon GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAG-CGGGAGGAGACACCATCCAACCG agtgctttcaatactgagccatttgccattcaattttcatctttacttagGTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCCGCGAGGAGACACCATCCAACCGgtaggcgcagaccagtcactaagagcctagagaaaagtagtagtcagaat Alignment from Exonerate_protein2genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAG-CGGGAGGAGACACCATCCAACCG agtgctttcaatactgagccatttgccattcaattttcatctttacttagGTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCCGCGAGGAGACACCATCCAACCGgtaggcgcagaccagtcactaagagcctagagaaaagtagtagtcagaat Alignment from Exonerate_coding2genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAG-CGGGAGGAGACACCATCCAACCG agtgctttcaatactgagccatttgccattcaattttcatctttacttagGTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCCGCGAGGAGACACCATCCAACCGgtaggcgcagaccagtcactaagagcctagagaaaagtagtagtcagaat Alignment from GeneWise GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTA-CAGCGGGAGGAGACACCATCCAACCG agtgctttcaatactgagccatttgccattcaattttcatctttacttagGTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCCGCGAGGAGACACCATCCAACCGgtaggcgcagaccagtcactaagagcctagagaaaagtagtagtcagaat #### Gbf1_ID9807_26 --> 0 - 0 Original Alignment CAATGTGACCCA-GAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctggcctttcttcctttgtcatggatctcccactgtctctcctccctagCAATGTGACCCACGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAGgtaatgtatgaagagacctgagaaaggcaacagggtggtcatgcagcctt Alignment from CESAR CAATGTGACCCA-GAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctggcctttcttcctttgtcatggatctcccactgtctctcctccctagCAATGTGACCCACGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAGgtaatgtatgaagagacctgagaaaggcaacagggtggtcatgcagcctt Alignment from Spaln_aa2Genome CAATGTGACCCA-GAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctggcctttcttcctttgtcatggatctcccactgtctctcctccctagCAATGTGACCCAcGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAGgtaatgtatgaagagacctgagaaaggcaacagggtggtcatgcagcctt Alignment from Spaln_nt2Genome CAATGTGACCCA-GAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctggcctttcttcctttgtcatggatctcccactgtctctcctccctagCAATGTGACCCACGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAGgtaatgtatgaagagacctgagaaaggcaacagggtggtcatgcagcctt Alignment from Pairagon CAATGTGACCCA-GAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctggcctttcttcctttgtcatggatctcccactgtctctcctccctagCAATGTGACCCACGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAGgtaatgtatgaagagacctgagaaaggcaacagggtggtcatgcagcctt Alignment from Exonerate_protein2genome CAATGTGACCCA-GAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctggcctttcttcctttgtcatggatctcccactgtctctcctccctagCAATGTGACCCACGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAGgtaatgtatgaagagacctgagaaaggcaacagggtggtcatgcagcctt Alignment from Exonerate_coding2genome CAATGTGACCCA-GAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctggcctttcttcctttgtcatggatctcccactgtctctcctccctagCAATGTGACCCACGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAGgtaatgtatgaagagacctgagaaaggcaacagggtggtcatgcagcctt Alignment from GeneWise CAATGTGACCCA-GAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctggcctttcttcctttgtcatggatctcccactgtctctcctccctagCAATGTGACCCACGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAGgtaatgtatgaagagacctgagaaaggcaacagggtggtcatgcagcctt #### Gbf1_ID9817_36 --> 0 - 0 Original Alignment GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCAT-GCAGGTTCCAGTGATTTGCTG aaggttcctctactacccttgactatcacgaatttgtgctcctctcgcagGTCTTCCTGCAGCATCTGTCTCCATTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATCGCAGGTTCCAGTGATTTGCTTgtgagatctgccttgggccagttccgattgaccacttcttcttgcacaca Alignment from CESAR GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCAT-GCAGGTTCCAGTGATTTGCTG aaggttcctctactacccttgactatcacgaatttgtgctcctctcgcagGTCTTCCTGCAGCATCTGTCTCCATTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATCGCAGGTTCCAGTGATTTGCTTgtgagatctgccttgggccagttccgattgaccacttcttcttgcacaca Alignment from Spaln_aa2Genome GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCAT-GCAGGTTCCAGTGATTTGCTG aaggttcctctactacccttgactatcacgaatttgtgctcctctcgcagGTCTTCCTGCAGCATCTGTCTCCATTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATcGCAGGTTCCAGTGATTTGCTTgtgagatctgccttgggccagttccgattgaccacttcttcttgcacaca Alignment from Spaln_nt2Genome GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCAT-GCAGGTTCCAGTGATTTGCTG aaggttcctctactacccttgactatcacgaatttgtgctcctctcgcagGTCTTCCTGCAGCATCTGTCTCCATTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATCGCAGGTTCCAGTGATTTGCTTgtgagatctgccttgggccagttccgattgaccacttcttcttgcacaca Alignment from Pairagon GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCAT-GCAGGTTCCAGTGATTTGCTG aaggttcctctactacccttgactatcacgaatttgtgctcctctcgcagGTCTTCCTGCAGCATCTGTCTCCATTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATCGCAGGTTCCAGTGATTTGCTTgtgagatctgccttgggccagttccgattgaccacttcttcttgcacaca Alignment from Exonerate_protein2genome GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCAT-GCAGGTTCCAGTGATTTGCTG aaggttcctctactacccttgactatcacgaatttgtgctcctctcgcagGTCTTCCTGCAGCATCTGTCTCCATTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATCGCAGGTTCCAGTGATTTGCTTgtgagatctgccttgggccagttccgattgaccacttcttcttgcacaca Alignment from Exonerate_coding2genome GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCAT-GCAGGTTCCAGTGATTTGCTG aaggttcctctactacccttgactatcacgaatttgtgctcctctcgcagGTCTTCCTGCAGCATCTGTCTCCATTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATCGCAGGTTCCAGTGATTTGCTTgtgagatctgccttgggccagttccgattgaccacttcttcttgcacaca Alignment from GeneWise GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCAT-GCAGGTTCCAGTGATTTGCTG aaggttcctctactacccttgactatcacgaatttgtgctcctctcgcagGTCTTCCTGCAGCATCTGTCTCCATTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATCGCAGGTTCCAGTGATTTGCTTgtgagatctgccttgggccagttccgattgaccacttcttcttgcacaca #### Gbf1_ID9818_37 --> 0 - 1 Original Alignment TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTC-CACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGg agcctccgtcttaagcgctgctcctcttttgctgacagtagcccctacagTCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGggtaagggcccatctgatctcaactcctctgttcactggagggtgctaaga Alignment from CESAR TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTC-CACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGg agcctccgtcttaagcgctgctcctcttttgctgacagtagcccctacagTCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGggtaagggcccatctgatctcaactcctctgttcactggagggtgctaaga Alignment from Spaln_aa2Genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTC-CACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG agcctccgtcttaagcgctgctcctcttttgctgacagtagcccctacagTCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCcCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGGgtaagggcccatctgatctcaactcctctgttcactggagggtgctaaga Alignment from Spaln_nt2Genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGA-TTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG agcctccgtcttaagcgctgctcctcttttgctgacagtagcccctacagTCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGGgtaagggcccatctgatctcaactcctctgttcactggagggtgctaaga Alignment from Pairagon TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTT-CCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG agcctccgtcttaagcgctgctcctcttttgctgacagtagcccctacagTCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGGgtaagggcccatctgatctcaactcctctgttcactggagggtgctaaga Alignment from Exonerate_protein2genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTC-CACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG agcctccgtcttaagcgctgctcctcttttgctgacagtagcccctacagTCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGGgtaagggcccatctgatctcaactcctctgttcactggagggtgctaaga Alignment from Exonerate_coding2genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTC-CACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG agcctccgtcttaagcgctgctcctcttttgctgacagtagcccctacagTCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGGgtaagggcccatctgatctcaactcctctgttcactggagggtgctaaga Alignment from GeneWise TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATT-TTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG agcctccgtcttaagcgctgctcctcttttgctgacagtagcccctacagTCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGGgtaagggcccatctgatctcaactcctctgttcactggagggtgctaaga #### Got1_ID8751_4 --> 2 - 0 Original Alignment agAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTC-CAGGGTTTCCTGAATGATCTGGAG tgtgccaccttgcctaataggcaccagccgcacgctgctcttctctccagagAACCATAATGCTGTGTTTTCTGCTGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCCAGGGTTTTCTGAATGATCTGGAGgcaagtgatacagaagagcagtggagaattctgtttaggtgcagcaagga Alignment from CESAR agAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTC-CAGGGTTTCCTGAATGATCTGGAG tgtgccaccttgcctaataggcaccagccgcacgctgctcttctctccagagAACCATAATGCTGTGTTTTCTGCTGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCCAGGGTTTTCTGAATGATCTGGAGgcaagtgatacagaagagcagtggagaattctgtttaggtgcagcaagga Alignment from Spaln_aa2Genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTC-CAGGGTTTCCTGAATGATCTGGAG tgtgccaccttgcctaataggcaccagccgcacgctgctcttctctccagAGAACCATAATGCTGTGTTTTCTGCTGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCcCAGGGTTTTCTGAATGATCTGGAGgcaagtgatacagaagagcagtggagaattctgtttaggtgcagcaagga Alignment from Spaln_nt2Genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTC-CAGGGTTTCCTGAATGATCTGGAG tgtgccaccttgcctaataggcaccagccgcacgctgctcttctctccagAGAACCATAATGCTGTGTTTTCTGCTGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCCAGGGTTTTCTGAATGATCTGGAGgcaagtgatacagaagagcagtggagaattctgtttaggtgcagcaagga Alignment from Pairagon AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCT-CCAGGGTTTCCTGAATGATCTGGAG tgtgccaccttgcctaataggcaccagccgcacgctgctcttctctccagAGAACCATAATGCTGTGTTTTCTGCTGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCCAGGGTTTTCTGAATGATCTGGAGgcaagtgatacagaagagcagtggagaattctgtttaggtgcagcaagga Alignment from Exonerate_protein2genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTC-CAGGGTTTCCTGAATGATCTGGAG tgtgccaccttgcctaataggcaccagccgcacgctgctcttctctccagAGAACCATAATGCTGTGTTTTCTGCTGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCCAGGGTTTTCTGAATGATCTGGAGgcaagtgatacagaagagcagtggagaattctgtttaggtgcagcaagga Alignment from Exonerate_coding2genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTC-CAGGGTTTCCTGAATGATCTGGAG tgtgccaccttgcctaataggcaccagccgcacgctgctcttctctccagAGAACCATAATGCTGTGTTTTCTGCTGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCCAGGGTTTTCTGAATGATCTGGAGgcaagtgatacagaagagcagtggagaattctgtttaggtgcagcaagga Alignment from GeneWise AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGAC-CTCCAGGGTTTCCTGAATGATCTGGAG---- tgtgccaccttgcctaataggcaccagccgcacgctgctcttctctccagAGAACCATAATGCTGTGTTTTCTGCTGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTGGACCTCCCAGGGTTTTCTGAATGATCTGGAGGCAAgtgatacagaagagcagtggagaattctgtttaggtgcagcaagga #### Gpr137_ID1885_6 --> 0 - 2 Original Alignment AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGA-TCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCag ttatggcagcagaagagaattgctatagcacaccttgttgcttgttacagAGCACCAGTCGAATCCTCAACGGGCAGGTTTTTGGCTCCCGACTCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCaggtgagtgcctctaccctgccttaagtgtgtcgagattcagcctgcctcca Alignment from CESAR AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGA-TCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCag ttatggcagcagaagagaattgctatagcacaccttgttgcttgttacagAGCACCAGTCGAATCCTCAACGGGCAGGTTTTTGGCTCCCGACTCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCaggtgagtgcctctaccctgccttaagtgtgtcgagattcagcctgcctcca Alignment from Spaln_aa2Genome AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGA-TCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG ttatggcagcagaagagaattgctatagcacaccttgttgcttgttacagAGCACCAGTCGAATCCTCAACGGGCAGGTTTTTGGCTCCCGAcTCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAGgtgagtgcctctaccctgccttaagtgtgtcgagattcagcctgcctcca Alignment from Spaln_nt2Genome AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGA-TCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG ttatggcagcagaagagaattgctatagcacaccttgttgcttgttacagAGCACCAGTCGAATCCTCAACGGGCAGGTTTTTGGCTCCCGACTCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAGgtgagtgcctctaccctgccttaagtgtgtcgagattcagcctgcctcca Alignment from Pairagon AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGA-TCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG ttatggcagcagaagagaattgctatagcacaccttgttgcttgttacagAGCACCAGTCGAATCCTCAACGGGCAGGTTTTTGGCTCCCGACTCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAGgtgagtgcctctaccctgccttaagtgtgtcgagattcagcctgcctcca Alignment from Exonerate_protein2genome AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGA-TCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG ttatggcagcagaagagaattgctatagcacaccttgttgcttgttacagAGCACCAGTCGAATCCTCAACGGGCAGGTTTTTGGCTCCCGACTCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAGgtgagtgcctctaccctgccttaagtgtgtcgagattcagcctgcctcca Alignment from Exonerate_coding2genome AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGA-TCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG ttatggcagcagaagagaattgctatagcacaccttgttgcttgttacagAGCACCAGTCGAATCCTCAACGGGCAGGTTTTTGGCTCCCGACTCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAGgtgagtgcctctaccctgccttaagtgtgtcgagattcagcctgcctcca Alignment from GeneWise AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGA-TCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG ttatggcagcagaagagaattgctatagcacaccttgttgcttgttacagAGCACCAGTCGAATCCTCAACGGGCAGGTTTTTGGCTCCCGACTCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAGgtgagtgcctctaccctgccttaagtgtgtcgagattcagcctgcctcca #### Hif1an_ID9068_6 --> 1 - 0 Original Alignment gTGGCACCATATA-GAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG gggccctccccacccctccctccaattatcattgggtttcttctctacaggTGGCACCATATACGAGTCATTACTAAATGGGGGAATTACTATCACTGTGAACTTCTGGTATAAGgtgagtattagtgaattgttgttgtttttgtcgttattgatatgtacaca Alignment from CESAR gTGGCACCATATA-GAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG gggccctccccacccctccctccaattatcattgggtttcttctctacaggTGGCACCATATACGAGTCATTACTAAATGGGGGAATTACTATCACTGTGAACTTCTGGTATAAGgtgagtattagtgaattgttgttgtttttgtcgttattgatatgtacaca Alignment from Spaln_aa2Genome GTGGCACCATATA-GAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG gggccctccccacccctccctccaattatcattgggtttcttctctacagGTGGCACCATATAcGAGTCATTACTAAATGGGGGAATTACTATCACTGTGAACTTCTGGTATAAGgtgagtattagtgaattgttgttgtttttgtcgttattgatatgtacaca Alignment from Spaln_nt2Genome GTGGCACCATATA-GAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG gggccctccccacccctccctccaattatcattgggtttcttctctacagGTGGCACCATATACGAGTCATTACTAAATGGGGGAATTACTATCACTGTGAACTTCTGGTATAAGgtgagtattagtgaattgttgttgtttttgtcgttattgatatgtacaca Alignment from Pairagon GTGGCACCATATA-GAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG gggccctccccacccctccctccaattatcattgggtttcttctctacagGTGGCACCATATACGAGTCATTACTAAATGGGGGAATTACTATCACTGTGAACTTCTGGTATAAGgtgagtattagtgaattgttgttgtttttgtcgttattgatatgtacaca Alignment from Exonerate_protein2genome GTGGCACCATATA-GAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG gggccctccccacccctccctccaattatcattgggtttcttctctacagGTGGCACCATATACGAGTCATTACTAAATGGGGGAATTACTATCACTGTGAACTTCTGGTATAAGgtgagtattagtgaattgttgttgtttttgtcgttattgatatgtacaca Alignment from Exonerate_coding2genome GTGGCACCATATA-GAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG gggccctccccacccctccctccaattatcattgggtttcttctctacagGTGGCACCATATACGAGTCATTACTAAATGGGGGAATTACTATCACTGTGAACTTCTGGTATAAGgtgagtattagtgaattgttgttgtttttgtcgttattgatatgtacaca Alignment from GeneWise GTGGCACCAT-ATAGAGTCATTACTAAATGGGGGAATTACCATCACTGTGAACTTCTGGTATAAG gggccctccccacccctccctccaattatcattgggtttcttctctacagGTGGCACCATATACGAGTCATTACTAAATGGGGGAATTACTATCACTGTGAACTTCTGGTATAAGgtgagtattagtgaattgttgttgtttttgtcgttattgatatgtacaca #### Hnrnpul2_ID2399_3 --> 1 - 1 Original Alignment cTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCA-AAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGt cagacaaaggaaaagttttggttatgttgaatgtatatcctctttgatagcTCGAAGTCCCCACCACCTCCAGAGGAAGAAGCACAAAGATGAAGAGGAGGCCCAGACACTTGTGAACCTGGACACAtgtaagaataaggattgctttgtgttttcagatagggctttgttgtgtttt Alignment from CESAR cTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCA-AAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGt cagacaaaggaaaagttttggttatgttgaatgtatatcctctttgatagcTCGAAGTCCCCACCACCTCCAGAGGAAGAAGCACAAAGATGAAGAGGAGGCCCAGACACTTGTGAACCTGGACACAtgtaagaataaggattgctttgtgttttcagatagggctttgttgtgtttt Alignment from Spaln_aa2Genome CTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCA-AAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT cagacaaaggaaaagttttggttatgttgaatgtatatcctctttgatagCTCGAAGTCCCCACCACCTCCAGAGGAAGAAGCAcAAAGATGAAGAGGAGGCCCAGACACTTGTGAACCTGGACACATgtaagaataaggattgctttgtgttttcagatagggctttgttgtgtttt Alignment from Spaln_nt2Genome CTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCA-AAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT cagacaaaggaaaagttttggttatgttgaatgtatatcctctttgatagCTCGAAGTCCCCACCACCTCCAGAGGAAGAAGCACAAAGATGAAGAGGAGGCCCAGACACTTGTGAACCTGGACACATgtaagaataaggattgctttgtgttttcagatagggctttgttgtgtttt Alignment from Pairagon CTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCA-AAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT cagacaaaggaaaagttttggttatgttgaatgtatatcctctttgatagCTCGAAGTCCCCACCACCTCCAGAGGAAGAAGCACAAAGATGAAGAGGAGGCCCAGACACTTGTGAACCTGGACACATgtaagaataaggattgctttgtgttttcagatagggctttgttgtgtttt Alignment from Exonerate_protein2genome CTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCA-AAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT cagacaaaggaaaagttttggttatgttgaatgtatatcctctttgatagCTCGAAGTCCCCACCACCTCCAGAGGAAGAAGCACAAAGATGAAGAGGAGGCCCAGACACTTGTGAACCTGGACACATgtaagaataaggattgctttgtgttttcagatagggctttgttgtgtttt Alignment from Exonerate_coding2genome CTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCA-AAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT cagacaaaggaaaagttttggttatgttgaatgtatatcctctttgatagCTCGAAGTCCCCACCACCTCCAGAGGAAGAAGCACAAAGATGAAGAGGAGGCCCAGACACTTGTGAACCTGGACACATgtaagaataaggattgctttgtgttttcagatagggctttgttgtgtttt Alignment from GeneWise CTCAAAGTCCCCACCACCTCCAGAAGAAGAA-GCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT cagacaaaggaaaagttttggttatgttgaatgtatatcctctttgatagCTCGAAGTCCCCACCACCTCCAGAGGAAGAAGCACAAAGATGAAGAGGAGGCCCAGACACTTGTGAACCTGGACACATgtaagaataaggattgctttgtgttttcagatagggctttgttgtgtttt #### Hnrnpul2_ID2400_4 --> 2 - 0 Original Alignment atACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGG-TCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaactttcatgccacttccttgcagatACGTCAGATCTCCACTTCCAAATAAGCAAAGACCGATATGGAGGCCAGCCACTCTTCTCAGAAAAGTTCCCTACCCTTTGGCTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCTAAGgtaagccattaatttaaactgtgtactagagtcctatccaccatttaatt Alignment from CESAR atACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGG-TCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaactttcatgccacttccttgcagatACGTCAGATCTCCACTTCCAAATAAGCAAAGACCGATATGGAGGCCAGCCACTCTTCTCAGAAAAGTTCCCTACCCTTTGGCTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCTAAGgtaagccattaatttaaactgtgtactagagtcctatccaccatttaatt Alignment from Spaln_aa2Genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGG-TCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaactttcatgccacttccttgcagATACGTCAGATCTCCACTTCCAAATAAGCAAAGACCGATATGGAGGCCAGCCACTCTTCTCAGAAAAGTTCCCTACCCTTTGGcTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCTAAGgtaagccattaatttaaactgtgtactagagtcctatccaccatttaatt Alignment from Spaln_nt2Genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGG-TCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaactttcatgccacttccttgcagATACGTCAGATCTCCACTTCCAAATAAGCAAAGACCGATATGGAGGCCAGCCACTCTTCTCAGAAAAGTTCCCTACCCTTTGGCTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCTAAGgtaagccattaatttaaactgtgtactagagtcctatccaccatttaatt Alignment from Pairagon ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGG-TCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaactttcatgccacttccttgcagATACGTCAGATCTCCACTTCCAAATAAGCAAAGACCGATATGGAGGCCAGCCACTCTTCTCAGAAAAGTTCCCTACCCTTTGGCTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCTAAGgtaagccattaatttaaactgtgtactagagtcctatccaccatttaatt Alignment from Exonerate_protein2genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGG-TCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaactttcatgccacttccttgcagATACGTCAGATCTCCACTTCCAAATAAGCAAAGACCGATATGGAGGCCAGCCACTCTTCTCAGAAAAGTTCCCTACCCTTTGGCTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCTAAGgtaagccattaatttaaactgtgtactagagtcctatccaccatttaatt Alignment from Exonerate_coding2genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGG-TCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaactttcatgccacttccttgcagATACGTCAGATCTCCACTTCCAAATAAGCAAAGACCGATATGGAGGCCAGCCACTCTTCTCAGAAAAGTTCCCTACCCTTTGGCTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCTAAGgtaagccattaatttaaactgtgtactagagtcctatccaccatttaatt Alignment from GeneWise ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGG-TCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaactttcatgccacttccttgcagATACGTCAGATCTCCACTTCCAAATAAGCAAAGACCGATATGGAGGCCAGCCACTCTTCTCAGAAAAGTTCCCTACCCTTTGGCTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCTAAGgtaagccattaatttaaactgtgtactagagtcctatccaccatttaatt #### Hnrnpul2_ID2404_8 --> 0 - 0 Original Alignment GTGATTCTGATGGTG-GGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tttataaaattgagtgacttttatttcagcctatccccctccctccccagGTGATTCTGATGGTGCGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGGgtcagttgctgagggttggggaaaggtgactagtggagacactgaaaatc Alignment from CESAR GTGATTCTGATGGTG-GGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tttataaaattgagtgacttttatttcagcctatccccctccctccccagGTGATTCTGATGGTGCGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGGgtcagttgctgagggttggggaaaggtgactagtggagacactgaaaatc Alignment from Spaln_aa2Genome GTGATTCTGATGGTG-GGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tttataaaattgagtgacttttatttcagcctatccccctccctccccagGTGATTCTGATGGTGcGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGGgtcagttgctgagggttggggaaaggtgactagtggagacactgaaaatc Alignment from Spaln_nt2Genome GTGATTCTGATGGTG-GGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tttataaaattgagtgacttttatttcagcctatccccctccctccccagGTGATTCTGATGGTGCGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGGgtcagttgctgagggttggggaaaggtgactagtggagacactgaaaatc Alignment from Pairagon GTGATTCTGATGGTG-GGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tttataaaattgagtgacttttatttcagcctatccccctccctccccagGTGATTCTGATGGTGCGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGGgtcagttgctgagggttggggaaaggtgactagtggagacactgaaaatc Alignment from Exonerate_protein2genome GTGATTCTGATGGTG-GGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tttataaaattgagtgacttttatttcagcctatccccctccctccccagGTGATTCTGATGGTGCGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGGgtcagttgctgagggttggggaaaggtgactagtggagacactgaaaatc Alignment from Exonerate_coding2genome GTGATTCTGATGGTG-GGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tttataaaattgagtgacttttatttcagcctatccccctccctccccagGTGATTCTGATGGTGCGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGGgtcagttgctgagggttggggaaaggtgactagtggagacactgaaaatc Alignment from GeneWise GTGATTCTGATG-GTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tttataaaattgagtgacttttatttcagcctatccccctccctccccagGTGATTCTGATGGTGCGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGGgtcagttgctgagggttggggaaaggtgactagtggagacactgaaaatc #### Hoga1_ID8380_3 --> 2 - 0 Original Alignment ccACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAG-GTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggggtgcactgactgagtactgctttgttataatgtcttggaatttcagccACGCAAGCTACAGTAGAGATGACTGTCAGCATGGCTCAGCGTGGGCGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCAGCACTCATTCACCACTACACCAAGgtaagtgggaatggtgggtgtggactaaaggtcaggattgacagagatgg Alignment from CESAR ccACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAG-GTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggggtgcactgactgagtactgctttgttataatgtcttggaatttcagccACGCAAGCTACAGTAGAGATGACTGTCAGCATGGCTCAGCGTGGGCGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCAGCACTCATTCACCACTACACCAAGgtaagtgggaatggtgggtgtggactaaaggtcaggattgacagagatgg Alignment from Spaln_aa2Genome CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAG-GTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggggtgcactgactgagtactgctttgttataatgtcttggaatttcagCCACGCAAGCTACAGTAGAGATGACTGTCAGCATGGCTCAGcGTGGGCGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCAGCACTCATTCACCACTACACCAAGgtaagtgggaatggtgggtgtggactaaaggtcaggattgacagagatgg Alignment from Spaln_nt2Genome CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAG-GTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggggtgcactgactgagtactgctttgttataatgtcttggaatttcagCCACGCAAGCTACAGTAGAGATGACTGTCAGCATGGCTCAGCGTGGGCGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCAGCACTCATTCACCACTACACCAAGgtaagtgggaatggtgggtgtggactaaaggtcaggattgacagagatgg Alignment from Pairagon CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAG-GTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggggtgcactgactgagtactgctttgttataatgtcttggaatttcagCCACGCAAGCTACAGTAGAGATGACTGTCAGCATGGCTCAGCGTGGGCGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCAGCACTCATTCACCACTACACCAAGgtaagtgggaatggtgggtgtggactaaaggtcaggattgacagagatgg Alignment from Exonerate_protein2genome CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAG-GTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggggtgcactgactgagtactgctttgttataatgtcttggaatttcagCCACGCAAGCTACAGTAGAGATGACTGTCAGCATGGCTCAGCGTGGGCGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCAGCACTCATTCACCACTACACCAAGgtaagtgggaatggtgggtgtggactaaaggtcaggattgacagagatgg Alignment from Exonerate_coding2genome CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAG-GTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggggtgcactgactgagtactgctttgttataatgtcttggaatttcagCCACGCAAGCTACAGTAGAGATGACTGTCAGCATGGCTCAGCGTGGGCGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCAGCACTCATTCACCACTACACCAAGgtaagtgggaatggtgggtgtggactaaaggtcaggattgacagagatgg Alignment from GeneWise CCACGCAAGCCACAGTAGAGATGACTGTCAGCATGGCTCAG-GTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggggtgcactgactgagtactgctttgttataatgtcttggaatttcagCCACGCAAGCTACAGTAGAGATGACTGTCAGCATGGCTCAGCGTGGGCGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCAGCACTCATTCACCACTACACCAAGgtaagtgggaatggtgggtgtggactaaaggtcaggattgacagagatgg #### Hps1_ID8615_13 --> 1 - 2 Original Alignment gCTGCTCCAGGTCTGTGGAAAG-CTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGaa ccttcctgtgtggtggggagctctatgtatctgaattctctctcttgcaggTTGCTCCAGGTCTGTGGAAAGCCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCACACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTTATGaagtaagtgtgccatgcttgaggaagagataggtggtcagggctcatgaaca Alignment from CESAR gCTGCTCCAGGTCTGTGGAAAG-CTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGaa ccttcctgtgtggtggggagctctatgtatctgaattctctctcttgcaggTTGCTCCAGGTCTGTGGAAAGCCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCACACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTTATGaagtaagtgtgccatgcttgaggaagagataggtggtcagggctcatgaaca Alignment from Spaln_aa2Genome GCTGCTCCAGGTCTGTGGAAAG-CTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ccttcctgtgtggtggggagctctatgtatctgaattctctctcttgcagGTTGCTCCAGGTCTGTGGAAAGcCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCACACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTTATGAAgtaagtgtgccatgcttgaggaagagataggtggtcagggctcatgaaca Alignment from Spaln_nt2Genome GCTGCTCCAGGTCTGTGG-AAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ccttcctgtgtggtggggagctctatgtatctgaattctctctcttgcagGTTGCTCCAGGTCTGTGGAAAGCCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCACACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTTATGAAgtaagtgtgccatgcttgaggaagagataggtggtcagggctcatgaaca Alignment from Pairagon GCTGCTCCAGGTCTGTGGAAAG-CTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ccttcctgtgtggtggggagctctatgtatctgaattctctctcttgcagGTTGCTCCAGGTCTGTGGAAAGCCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCACACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTTATGAAgtaagtgtgccatgcttgaggaagagataggtggtcagggctcatgaaca Alignment from Exonerate_protein2genome GCTGCTCCAGGTCTGTGGAAAG-CTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ccttcctgtgtggtggggagctctatgtatctgaattctctctcttgcagGTTGCTCCAGGTCTGTGGAAAGCCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCACACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTTATGAAgtaagtgtgccatgcttgaggaagagataggtggtcagggctcatgaaca Alignment from Exonerate_coding2genome GCTGCTCCAGGTCTGTGGAAAG-CTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ccttcctgtgtggtggggagctctatgtatctgaattctctctcttgcagGTTGCTCCAGGTCTGTGGAAAGCCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCACACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTTATGAAgtaagtgtgccatgcttgaggaagagataggtggtcagggctcatgaaca Alignment from GeneWise GCTGCTCCAGGTCTGTGGAAAG-CTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ccttcctgtgtggtggggagctctatgtatctgaattctctctcttgcagGTTGCTCCAGGTCTGTGGAAAGCCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCACACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTTATGAAgtaagtgtgccatgcttgaggaagagataggtggtcagggctcatgaaca #### Hps1_ID8622_6 --> 1 - 0 Original Alignment cCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAG-GAGGAGGAGGAGGATAGCGACAGCCCTCAG cagcaatgttttagttgcatgctcacaggtttctctctttctccccatagcCAAGGTGCAAGCACCCTGTGCCCTGCAGACCTCCTGGCACTCATCCTCCTGGTGCAGGACCTTCAGCCCTCCCCAGGTACCACAGAGGAGGAGCGGGGAGGAGGAAGATAGTGACAGCCCTCAGgtaagcgagcacaaggggaataggatgacatttgtcttgctgctctaaga Alignment from CESAR cCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAG-GAGGAGGAGGAGGATAGCGACAGCCCTCAG cagcaatgttttagttgcatgctcacaggtttctctctttctccccatagcCAAGGTGCAAGCACCCTGTGCCCTGCAGACCTCCTGGCACTCATCCTCCTGGTGCAGGACCTTCAGCCCTCCCCAGGTACCACAGAGGAGGAGCGGGGAGGAGGAAGATAGTGACAGCCCTCAGgtaagcgagcacaaggggaataggatgacatttgtcttgctgctctaaga Alignment from Spaln_aa2Genome CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAG-GAGGAGGAGGAGGATAGCGACAGCCCTCAG cagcaatgttttagttgcatgctcacaggtttctctctttctccccatagCCAAGGTGCAAGCACCCTGTGCCCTGCAGACCTCCTGGCACTCATCCTCCTGGTGCAGGACCTTCAGCCCTCCCCAGGTACCACAGAGGAGGAGcGGGGAGGAGGAAGATAGTGACAGCCCTCAGgtaagcgagcacaaggggaataggatgacatttgtcttgctgctctaaga Alignment from Spaln_nt2Genome CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAG-GAGGAGGAGGAGGATAGCGACAGCCCTCAG cagcaatgttttagttgcatgctcacaggtttctctctttctccccatagCCAAGGTGCAAGCACCCTGTGCCCTGCAGACCTCCTGGCACTCATCCTCCTGGTGCAGGACCTTCAGCCCTCCCCAGGTACCACAGAGGAGGAGCGGGGAGGAGGAAGATAGTGACAGCCCTCAGgtaagcgagcacaaggggaataggatgacatttgtcttgctgctctaaga Alignment from Pairagon CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAG-GAGGAGGAGGAGGATAGCGACAGCCCTCAG cagcaatgttttagttgcatgctcacaggtttctctctttctccccatagCCAAGGTGCAAGCACCCTGTGCCCTGCAGACCTCCTGGCACTCATCCTCCTGGTGCAGGACCTTCAGCCCTCCCCAGGTACCACAGAGGAGGAGCGGGGAGGAGGAAGATAGTGACAGCCCTCAGgtaagcgagcacaaggggaataggatgacatttgtcttgctgctctaaga Alignment from Exonerate_protein2genome CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAG-GAGGAGGAGGATAGCGACAGCCCTCAG cagcaatgttttagttgcatgctcacaggtttctctctttctccccatagCCAAGGTGCAAGCACCCTGTGCCCTGCAGACCTCCTGGCACTCATCCTCCTGGTGCAGGACCTTCAGCCCTCCCCAGGTACCACAGAGGAGGAGCGGGGAGGAGGAAGATAGTGACAGCCCTCAGgtaagcgagcacaaggggaataggatgacatttgtcttgctgctctaaga Alignment from Exonerate_coding2genome CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAG-GAGGAGGAGGATAGCGACAGCCCTCAG cagcaatgttttagttgcatgctcacaggtttctctctttctccccatagCCAAGGTGCAAGCACCCTGTGCCCTGCAGACCTCCTGGCACTCATCCTCCTGGTGCAGGACCTTCAGCCCTCCCCAGGTACCACAGAGGAGGAGCGGGGAGGAGGAAGATAGTGACAGCCCTCAGgtaagcgagcacaaggggaataggatgacatttgtcttgctgctctaaga Alignment from GeneWise CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAG-GAGGAGGAGGAGGATAGCGACAGCCCTCAG cagcaatgttttagttgcatgctcacaggtttctctctttctccccatagCCAAGGTGCAAGCACCCTGTGCCCTGCAGACCTCCTGGCACTCATCCTCCTGGTGCAGGACCTTCAGCCCTCCCCAGGTACCACAGAGGAGGAGCGGGGAGGAGGAAGATAGTGACAGCCCTCAGgtaagcgagcacaaggggaataggatgacatttgtcttgctgctctaaga #### Incenp_ID2611_8 --> 1 - 0 Original Alignment gAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGAT-GAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG tggggggctatgacacctctttatgacaattaattgtatcttttacttaggAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCAGATGAGGAGCAACTGGAAGATCGAAGAACTGAAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCTGCCAACAAGgtgtgtaactgctcatgcttgatgcctgccttgtgtgttccatcctgacg Alignment from CESAR gAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGAT-GAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG tggggggctatgacacctctttatgacaattaattgtatcttttacttaggAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCAGATGAGGAGCAACTGGAAGATCGAAGAACTGAAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCTGCCAACAAGgtgtgtaactgctcatgcttgatgcctgccttgtgtgttccatccggatg Alignment from Spaln_aa2Genome GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGAT-GAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG tggggggctatgacacctctttatgacaattaattgtatcttttacttagGAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCAGATGAGGAGCAACTGGAAGATcGAAGAACTGAAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCTGCCAACAAGgtgtgtaactgctcatgcttgatgcctgccttgtgtgttccatcctgacg Alignment from Spaln_nt2Genome GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGAT-GAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG tggggggctatgacacctctttatgacaattaattgtatcttttacttagGAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCAGATGAGGAGCAACTGGAAGATCGAAGAACTGAAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCTGCCAACAAGgtgtgtaactgctcatgcttgatgcctgccttgtgtgttccatcctgacg Alignment from Pairagon GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGAT-GAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG tggggggctatgacacctctttatgacaattaattgtatcttttacttagGAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCAGATGAGGAGCAACTGGAAGATCGAAGAACTGAAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCTGCCAACAAGgtgtgtaactgctcatgcttgatgcctgccttgtgtgttccatcctgacg Alignment from Exonerate_protein2genome GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGAT-GAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG tggggggctatgacacctctttatgacaattaattgtatcttttacttagGAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCAGATGAGGAGCAACTGGAAGATCGAAGAACTGAAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCTGCCAACAAGgtgtgtaactgctcatgcttgatgcctgccttgtgtgttccatcctgacg Alignment from Exonerate_coding2genome GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGAT-GAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG tggggggctatgacacctctttatgacaattaattgtatcttttacttagGAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCAGATGAGGAGCAACTGGAAGATCGAAGAACTGAAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCTGCCAACAAGgtgtgtaactgctcatgcttgatgcctgccttgtgtgttccatcctgacg Alignment from GeneWise GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGAT-GAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG tggggggctatgacacctctttatgacaattaattgtatcttttacttagGAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCAGATGAGGAGCAACTGGAAGATCGAAGAACTGAAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCTGCCAACAAGgtgtgtaactgctcatgcttgatgcctgccttgtgtgttccatcctgacg #### Incenp_ID2614_5 --> 1 - 0 Original Alignment cCTGGAGCAGGAGCCTGTCGAGGTG-GCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG gaggaaacttagacttatgagttctcatccccagctcttgttttctgtagcCTGGAGCAGGAGCCTGTTGAGGTGCGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAGgtgggttcacaagccagacatgggtaggatctgacccccccaggtctgtg Alignment from CESAR cCTGGAGCAGGAGCCTGTCGAGGTG-GCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG gaggaaacttagacttatgagttctcatccccagctcttgttttctgtagcCTGGAGCAGGAGCCTGTTGAGGTGCGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAGgtgggttcacaagccagacatgggtaggatctgacccccccaggtctgtg Alignment from Spaln_aa2Genome CCTGGAGCAGGAGCCTGTCGAGGTG-GCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG gaggaaacttagacttatgagttctcatccccagctcttgttttctgtagCCTGGAGCAGGAGCCTGTTGAGGTGcGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAGgtgggttcacaagccagacatgggtaggatctgacccccccaggtctgtg Alignment from Spaln_nt2Genome CCTGGAGCAGGAGCCTGTCGAGGTG-GCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG gaggaaacttagacttatgagttctcatccccagctcttgttttctgtagCCTGGAGCAGGAGCCTGTTGAGGTGCGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAGgtgggttcacaagccagacatgggtaggatctgacccccccaggtctgtg Alignment from Pairagon CCTGGAGCAGGAGCCTGTCGAGGTG-GCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG gaggaaacttagacttatgagttctcatccccagctcttgttttctgtagCCTGGAGCAGGAGCCTGTTGAGGTGCGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAGgtgggttcacaagccagacatgggtaggatctgacccccccaggtctgtg Alignment from Exonerate_protein2genome CCTGGAGCAGGAGCCTGTCGAGGTG-GCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG gaggaaacttagacttatgagttctcatccccagctcttgttttctgtagCCTGGAGCAGGAGCCTGTTGAGGTGCGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAGgtgggttcacaagccagacatgggtaggatctgacccccccaggtctgtg Alignment from Exonerate_coding2genome CCTGGAGCAGGAGCCTGTCGAGGTG-GCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG gaggaaacttagacttatgagttctcatccccagctcttgttttctgtagCCTGGAGCAGGAGCCTGTTGAGGTGCGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAGgtgggttcacaagccagacatgggtaggatctgacccccccaggtctgtg Alignment from GeneWise CCTGGAGCAGGAGCCTGTCGAGGTG-GCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG gaggaaacttagacttatgagttctcatccccagctcttgttttctgtagCCTGGAGCAGGAGCCTGTTGAGGTGCGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAGgtgggttcacaagccagacatgggtaggatctgacccccccaggtctgtg #### Kat5_ID1114_8 --> 0 - 0 Original Alignment GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAA-TTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG acactctacttaactgctaccatctagttgaactaacatggtttttacagGATTCTCAGGACAGCTCAGACGGAATACCAACAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCAGAGCCATGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTATTTCTCCCCATACCCTCAAGAGCTTACCACGCTACCTGTCCTCTACCTGTGTGAACTTTTGCCTCAAATATGGCCGTAGTCTCAAGTGTCTGAAACGCCACTTGgtattagggatcttgggaggcggcctatccagagtaccctcaccagtccc Alignment from CESAR GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAA-TTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG acactctacttaactgctaccatctagttgaactaacatggtttttacagGATTCTCAGGACAGCTCAGACGGAATACCAACAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCAGAGCCATGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTATTTCTCCCCATACCCTCAAGAGCTTACCACGCTACCTGTCCTCTACCTGTGTGAACTTTTGCCTCAAATATGGCCGTAGTCTCAAGTGTCTGAAACGCCACTTGgtattagggatcttgggaggcggcctatccagagtaccctcaccagtccc Alignment from Spaln_aa2Genome GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAA-TTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG acactctacttaactgctaccatctagttgaactaacatggtttttacagGATTCTCAGGACAGCTCAGACGGAATACCAACAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCAGAGCCATGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTATTTCTCCCCATACCCTCAAGAGCTTACCACGCTACCTGTCCTCTACCTGTGTGAAcTTTTGCCTCAAATATGGCCGTAGTCTCAAGTGTCTGAAACGCCACTTGgtattagggatcttgggaggcggcctatccagagtaccctcaccagtccc Alignment from Spaln_nt2Genome GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAA-TTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG acactctacttaactgctaccatctagttgaactaacatggtttttacagGATTCTCAGGACAGCTCAGACGGAATACCAACAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCAGAGCCATGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTATTTCTCCCCATACCCTCAAGAGCTTACCACGCTACCTGTCCTCTACCTGTGTGAACTTTTGCCTCAAATATGGCCGTAGTCTCAAGTGTCTGAAACGCCACTTGgtattagggatcttgggaggcggcctatccagagtaccctcaccagtccc Alignment from Pairagon GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAA-TTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG acactctacttaactgctaccatctagttgaactaacatggtttttacagGATTCTCAGGACAGCTCAGACGGAATACCAACAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCAGAGCCATGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTATTTCTCCCCATACCCTCAAGAGCTTACCACGCTACCTGTCCTCTACCTGTGTGAACTTTTGCCTCAAATATGGCCGTAGTCTCAAGTGTCTGAAACGCCACTTGgtattagggatcttgggaggcggcctatccagagtaccctcaccagtccc Alignment from Exonerate_protein2genome GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAA-TTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG acactctacttaactgctaccatctagttgaactaacatggtttttacagGATTCTCAGGACAGCTCAGACGGAATACCAACAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCAGAGCCATGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTATTTCTCCCCATACCCTCAAGAGCTTACCACGCTACCTGTCCTCTACCTGTGTGAACTTTTGCCTCAAATATGGCCGTAGTCTCAAGTGTCTGAAACGCCACTTGgtattagggatcttgggaggcggcctatccagagtaccctcaccagtccc Alignment from Exonerate_coding2genome GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAA-TTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG acactctacttaactgctaccatctagttgaactaacatggtttttacagGATTCTCAGGACAGCTCAGACGGAATACCAACAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCAGAGCCATGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTATTTCTCCCCATACCCTCAAGAGCTTACCACGCTACCTGTCCTCTACCTGTGTGAACTTTTGCCTCAAATATGGCCGTAGTCTCAAGTGTCTGAAACGCCACTTGgtattagggatcttgggaggcggcctatccagagtaccctcaccagtccc Alignment from GeneWise GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGC-GAATTTTGCCTCAAATATGGCCGTAGCCTCAAGTGTCTGCAACGCCACTTG-------------------------------------------------- acactctacttaactgctaccatctagttgaactaacatggtttttacagGATTCTCAGGACAGCTCAGACGGAATACCAACAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCAGAGCCATGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTATTTCTCCCCATACCCTCAAGAGCTTACCACGCTACCTGTCCTCTACCTGTGTGAACTTTTGCCTCAAATATGGCCGTAGTCTCAAGTGTCTGAAACGCCACTTGGTATTAGGGATCTTGGGAGGCGGCCTATCCAGAGTACCCTCACCAGTCCC #### Kat5_ID1116_6 --> 0 - 0 Original Alignment AAACGGAAGGTGGAGGTGGTT-TCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG gacccaccttctctatcttctgacctgcattttgcattttctactgtcagAAGCGGAAGGTGGAGGTGGTTCTCACCAGCGACCCCAGTGCCCAGTGAGACAGCCCCAGCCTCGGTTTTCCCTCAGgtgaggcttccattcttttttcaagtgtctaaatgttttgtctgcgtttt Alignment from CESAR AAACGGAAGGTGGAGGTGGTT-TCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG gacccaccttctctatcttctgacctgcattttgcattttctactgtcagAAGCGGAAGGTGGAGGTGGTTCTCACCAGCGACCCCAGTGCCCAGTGAGACAGCCCCAGCCTCGGTTTTCCCTCAGgtgaggcttccattcttttttcaagtgtctaaatgttttgtctgcgtttt Alignment from Spaln_aa2Genome AAACGGAAGGTGGAGGTGGTT-TCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG gacccaccttctctatcttctgacctgcattttgcattttctactgtcagAAGCGGAAGGTGGAGGTGGTTcTCACCAGCGACCCCAGTGCCCAGTGAGACAGCCCCAGCCTCGGTTTTCCCTCAGgtgaggcttccattcttttttcaagtgtctaaatgttttgtctgcgtttt Alignment from Spaln_nt2Genome AAACGGAAGGTGGAGGTGGTT-TCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG gacccaccttctctatcttctgacctgcattttgcattttctactgtcagAAGCGGAAGGTGGAGGTGGTTCTCACCAGCGACCCCAGTGCCCAGTGAGACAGCCCCAGCCTCGGTTTTCCCTCAGgtgaggcttccattcttttttcaagtgtctaaatgttttgtctgcgtttt Alignment from Pairagon AAACGGAAGGTGGAGGTGGTT-TCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG gacccaccttctctatcttctgacctgcattttgcattttctactgtcagAAGCGGAAGGTGGAGGTGGTTCTCACCAGCGACCCCAGTGCCCAGTGAGACAGCCCCAGCCTCGGTTTTCCCTCAGgtgaggcttccattcttttttcaagtgtctaaatgttttgtctgcgtttt Alignment from Exonerate_protein2genome AAACGGAAGGTGGAGGTGGTT-TCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG gacccaccttctctatcttctgacctgcattttgcattttctactgtcagAAGCGGAAGGTGGAGGTGGTTCTCACCAGCGACCCCAGTGCCCAGTGAGACAGCCCCAGCCTCGGTTTTCCCTCAGgtgaggcttccattcttttttcaagtgtctaaatgttttgtctgcgtttt Alignment from Exonerate_coding2genome AAACGGAAGGTGGAGGTGGTT-TCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG gacccaccttctctatcttctgacctgcattttgcattttctactgtcagAAGCGGAAGGTGGAGGTGGTTCTCACCAGCGACCCCAGTGCCCAGTGAGACAGCCCCAGCCTCGGTTTTCCCTCAGgtgaggcttccattcttttttcaagtgtctaaatgttttgtctgcgtttt Alignment from GeneWise AAACGGAAGGTGGAGGTGGTT-TCACCAGCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG gacccaccttctctatcttctgacctgcattttgcattttctactgtcagAAGCGGAAGGTGGAGGTGGTTCTCACCAGCGACCCCAGTGCCCAGTGAGACAGCCCCAGCCTCGGTTTTCCCTCAGgtgaggcttccattcttttttcaagtgtctaaatgttttgtctgcgtttt #### Kat5_ID1117_5 --> 0 - 0 Original Alignment CCGGCCTCCGCCCAGGCCAGCGGG-AAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tcccaccaccatccccaccccagaggaatgcccggttgtcttatttgtagCCGGCCTCCGCCCAGGCCAGCGGGCAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACGgtgagttcactgattccaggaacctttctttcttctcaggacccaccttc Alignment from CESAR CCGGCCTCCGCCCAGGCCAGCGGG-AAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tcccaccaccatccccaccccagaggaatgcccggttgtcttatttgtagCCGGCCTCCGCCCAGGCCAGCGGGCAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACGgtgagttcactgattccaggaacctttctttcttctcaggacccaccttc Alignment from Spaln_aa2Genome -CCGGCCTCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tcccaccaccatccccaccccagaggaatgcccggttgtcttatttgtagCCGGCCTCCGCCCAGGCCAGCGGGCAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACGgtgagttcactgattccaggaacctttctttcttctcaggacccaccttc Alignment from Spaln_nt2Genome CCGGCCTCCGCCCAGGCCAGC-GGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tcccaccaccatccccaccccagaggaatgcccggttgtcttatttgtagCCGGCCTCCGCCCAGGCCAGCGGGCAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACGgtgagttcactgattccaggaacctttctttcttctcaggacccaccttc Alignment from Pairagon CCGGCCTCCGCCCAGGCCAGCGGG-AAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tcccaccaccatccccaccccagaggaatgcccggttgtcttatttgtagCCGGCCTCCGCCCAGGCCAGCGGGCAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACGgtgagttcactgattccaggaacctttctttcttctcaggacccaccttc Alignment from Exonerate_protein2genome CCGGCCTCCGCCCAGGCCAGC-GGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tcccaccaccatccccaccccagaggaatgcccggttgtcttatttgtagCCGGCCTCCGCCCAGGCCAGCGGGCAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACGgtgagttcactgattccaggaacctttctttcttctcaggacccaccttc Alignment from Exonerate_coding2genome CCGGCCTCCGCCCAGGCCAGC-GGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tcccaccaccatccccaccccagaggaatgcccggttgtcttatttgtagCCGGCCTCCGCCCAGGCCAGCGGGCAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACGgtgagttcactgattccaggaacctttctttcttctcaggacccaccttc Alignment from GeneWise -------TCCGCCCAGGCCAGCGGGAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACG tcccaccaccatccccaccccagaggaatgcccggttgtcttatttgtagCCGGCCTCCGCCCAGGCCAGCGGGCAAGACCTTGCCAATCCCGGTCCAGATCACACTCCGCTTCAACCTGCCCAAGGAGCGGGAGGCCATCCCAGGTGGCGAGCCTGACCAGCCGCTCTCCTCCAGCTCCTGCCTGCAACCCAACCACCGCTCAACGgtgagttcactgattccaggaacctttctttcttctcaggacccaccttc #### Kat5_ID1120_2 --> 0 - 1 Original Alignment GGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAAC-GAAGATGAGTGGc gagcctgaggcccgccagtacccaacccacgtgttcccggctctccccagGGGGAGATAATCGAGGGCTGCCGCCTGCCCGTCCTTCGGCGCAATCAAGACAATCGAAGATGAGTGGcgtgactgatgtcagggggcaggtccaaagaagctgagggcggggggcagg Alignment from CESAR GGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAAC-GAAGATGAGTGGc gagcctgaggcccgccagtacccaacccacgtgttcccggctctccccagGGGGAGATAATCGAGGGCTGCCGCCTGCCCGTCCTTCGGCGCAATCAAGACAATCGAAGATGAGTGGcgtgactgatgtcagggggcaggtccaaagaagctgagggcggggggcagg Alignment from Spaln_aa2Genome GGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAAC-GAAGATGAGTGGC gagcctgaggcccgccagtacccaacccacgtgttcccggctctccccagGGGGAGATAATCGAGGGCTGCCGCCTGCCCGTCCTTCGGCGCAATCAAGACAATcGAAGATGAGTGGCgtgactgatgtcagggggcaggtccaaagaagctgagggcggggggcagg Alignment from Spaln_nt2Genome GGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAA-CGAAGATGAGTGGC gagcctgaggcccgccagtacccaacccacgtgttcccggctctccccagGGGGAGATAATCGAGGGCTGCCGCCTGCCCGTCCTTCGGCGCAATCAAGACAATCGAAGATGAGTGGCgtgactgatgtcagggggcaggtccaaagaagctgagggcggggggcagg Alignment from Pairagon ----------------------------------------------------GGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAA-CGAAGATGAGTGGC GAGCCTGAGGCCCGCCAGTACCCAACCCACGTGTTCCCGGCTCTCCCCAGGGGGAGATAATCGAGGGCTGCCGCCTGCCCGTCCTTCGGCGCAATCAAGACAATCGAAGATGAGTGGCgtgactgatgtcagggggcaggtccaaagaagctgagggcggggggcagg Alignment from Exonerate_protein2genome GGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAAC-GAAGATGAGTGGC gagcctgaggcccgccagtacccaacccacgtgttcccggctctccccagGGGGAGATAATCGAGGGCTGCCGCCTGCCCGTCCTTCGGCGCAATCAAGACAATCGAAGATGAGTGGCgtgactgatgtcagggggcaggtccaaagaagctgagggcggggggcagg Alignment from Exonerate_coding2genome GGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAAC-GAAGATGAGTGGC gagcctgaggcccgccagtacccaacccacgtgttcccggctctccccagGGGGAGATAATCGAGGGCTGCCGCCTGCCCGTCCTTCGGCGCAATCAAGACAATCGAAGATGAGTGGCgtgactgatgtcagggggcaggtccaaagaagctgagggcggggggcagg Alignment from GeneWise GCGGAGGTGGGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGCAACCAGGACAAC-GAAGATGAGTGGC gagcctgaggcccgccagtacccaacccacgtgttcccggcTCTCCCCAGGGGGAGATAATCGAGGGCTGCCGCCTGCCCGTCCTTCGGCGCAATCAAGACAATCGAAGATGAGTGGCgtgactgatgtcagggggcaggtccaaagaagctgagggcggggggcagg #### Kazald1_ID9301_3 --> 0 - 1 Original Alignment TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCT-AGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAg aaaacaggacttctgcaaatgaccttgcttcttgtttttcccacttttagTTCAGGGGTGGACCTCAGAAGTTTGAGGTGACCGGCTGGCTACAGATTCAAGCTTTGCGCCCTCAGTGATGAAGGCACTTACCGTTGCCTTGCCCGAAATGCTCTGGGCCAAGCGGAAGCCTCTGCAACCCTCACAGTGCTCACACCAggtaaggctgagcactgggtgccaggatgggccgtgttagggctcctggat Alignment from CESAR TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCT-AGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAg aaaacaggacttctgcaaatgaccttgcttcttgtttttcccacttttagTTCAGGGGTGGACCTCAGAAGTTTGAGGTGACCGGCTGGCTACAGATTCAAGCTTTGCGCCCTCAGTGATGAAGGCACTTACCGTTGCCTTGCCCGAAATGCTCTGGGCCAAGCGGAAGCCTCTGCAACCCTCACAGTGCTCACACCAggtaaggctgagcactgggtgccaggatgggccgtgttagggctcctggat Alignment from Spaln_aa2Genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCT-AGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG aaaacaggacttctgcaaatgaccttgcttcttgtttttcccacttttagTTCAGGGGTGGACCTCAGAAGTTTGAGGTGACCGGCTGGCTACAGATTCAAGCTTTGCGCCCTcAGTGATGAAGGCACTTACCGTTGCCTTGCCCGAAATGCTCTGGGCCAAGCGGAAGCCTCTGCAACCCTCACAGTGCTCACACCAGgtaaggctgagcactgggtgccaggatgggccgtgttagggctcctggat Alignment from Spaln_nt2Genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCG-CCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG aaaacaggacttctgcaaatgaccttgcttcttgtttttcccacttttagTTCAGGGGTGGACCTCAGAAGTTTGAGGTGACCGGCTGGCTACAGATTCAAGCTTTGCGCCCTCAGTGATGAAGGCACTTACCGTTGCCTTGCCCGAAATGCTCTGGGCCAAGCGGAAGCCTCTGCAACCCTCACAGTGCTCACACCAGgtaaggctgagcactgggtgccaggatgggccgtgttagggctcctggat Alignment from Pairagon TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCT-AGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG aaaacaggacttctgcaaatgaccttgcttcttgtttttcccacttttagTTCAGGGGTGGACCTCAGAAGTTTGAGGTGACCGGCTGGCTACAGATTCAAGCTTTGCGCCCTCAGTGATGAAGGCACTTACCGTTGCCTTGCCCGAAATGCTCTGGGCCAAGCGGAAGCCTCTGCAACCCTCACAGTGCTCACACCAGgtaaggctgagcactgggtgccaggatgggccgtgttagggctcctggat Alignment from Exonerate_protein2genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCT-AGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG aaaacaggacttctgcaaatgaccttgcttcttgtttttcccacttttagTTCAGGGGTGGACCTCAGAAGTTTGAGGTGACCGGCTGGCTACAGATTCAAGCTTTGCGCCCTCAGTGATGAAGGCACTTACCGTTGCCTTGCCCGAAATGCTCTGGGCCAAGCGGAAGCCTCTGCAACCCTCACAGTGCTCACACCAGgtaaggctgagcactgggtgccaggatgggccgtgttagggctcctggat Alignment from Exonerate_coding2genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCT-AGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG aaaacaggacttctgcaaatgaccttgcttcttgtttttcccacttttagTTCAGGGGTGGACCTCAGAAGTTTGAGGTGACCGGCTGGCTACAGATTCAAGCTTTGCGCCCTCAGTGATGAAGGCACTTACCGTTGCCTTGCCCGAAATGCTCTGGGCCAAGCGGAAGCCTCTGCAACCCTCACAGTGCTCACACCAGgtaaggctgagcactgggtgccaggatgggccgtgttagggctcctggat Alignment from GeneWise TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCT-AGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG aaaacaggacttctgcaaatgaccttgcttcttgtttttcccacttttagTTCAGGGGTGGACCTCAGAAGTTTGAGGTGACCGGCTGGCTACAGATTCAAGCTTTGCGCCCTCAGTGATGAAGGCACTTACCGTTGCCTTGCCCGAAATGCTCTGGGCCAAGCGGAAGCCTCTGCAACCCTCACAGTGCTCACACCAGgtaaggctgagcactgggtgccaggatgggccgtgttagggctcctggat #### Kcnip2_ID9605_7 --> 0 - 0 Original Alignment GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGAT-GATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG atttccatgccaaagtgggttggcaaagaatatcagtttctacatttcagGACTTTGTGGCAGGTTTGTCAGTAATTCTTCGGGGAACCATAGATCGATAGATTGAACTGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACGAAGGAGgttggtggccaccgggggcaagaggggtggcatgtgagggcacgtggcaa Alignment from CESAR GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGAT-GATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG atttccatgccaaagtgggttggcaaagaatatcagtttctacatttcagGACTTTGTGGCAGGTTTGTCAGTAATTCTTCGGGGAACCATAGATCGATAGATTGAACTGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACGAAGGAGgttggtggccaccgggggcaagaggggtggcatgtgagggcacgtggcaa Alignment from Spaln_aa2Genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGAT-GATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG atttccatgccaaagtgggttggcaaagaatatcagtttctacatttcagGACTTTGTGGCAGGTTTGTCAGTAATTCTTCGGGGAACCATAGATcGATAGATTGAACTGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACGAAGGAGgttggtggccaccgggggcaagaggggtggcatgtgagggcacgtggcaa Alignment from Spaln_nt2Genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGAT-GATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG atttccatgccaaagtgggttggcaaagaatatcagtttctacatttcagGACTTTGTGGCAGGTTTGTCAGTAATTCTTCGGGGAACCATAGATCGATAGATTGAACTGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACGAAGGAGgttggtggccaccgggggcaagaggggtggcatgtgagggcacgtggcaa Alignment from Pairagon GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGAT-GATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG atttccatgccaaagtgggttggcaaagaatatcagtttctacatttcagGACTTTGTGGCAGGTTTGTCAGTAATTCTTCGGGGAACCATAGATCGATAGATTGAACTGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACGAAGGAGgttggtggccaccgggggcaagaggggtggcatgtgagggcacgtggcaa Alignment from Exonerate_protein2genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGAT-GATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG atttccatgccaaagtgggttggcaaagaatatcagtttctacatttcagGACTTTGTGGCAGGTTTGTCAGTAATTCTTCGGGGAACCATAGATCGATAGATTGAACTGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACGAAGGAGgttggtggccaccgggggcaagaggggtggcatgtgagggcacgtggcaa Alignment from Exonerate_coding2genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGAT-GATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG atttccatgccaaagtgggttggcaaagaatatcagtttctacatttcagGACTTTGTGGCAGGTTTGTCAGTAATTCTTCGGGGAACCATAGATCGATAGATTGAACTGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACGAAGGAGgttggtggccaccgggggcaagaggggtggcatgtgagggcacgtggcaa Alignment from GeneWise GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGAT-GATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG atttccatgccaaagtgggttggcaaagaatatcagtttctacatttcagGACTTTGTGGCAGGTTTGTCAGTAATTCTTCGGGGAACCATAGATCGATAGATTGAACTGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACGAAGGAGgttggtggccaccgggggcaagaggggtggcatgtgagggcacgtggcaa #### Kcnip2_ID9606_6 --> 2 - 0 Original Alignment acTCCAGCAACTACGCTACTTTTCTCTTCAATGCCTTTGACACCAACCATGATGGC-TCTGTCAGTTTTGAG ccaaggagaagtgggtatgcctgcctgactgacacacttgttgcactcagacTCCAGCAACTACGCTACTTTCCTCTTCAATGCCTTTGACACCAACCATGATGGCCTCTGTCAGTTTTGAGgtgagccaggagagatgatgggccaaacaaacaagcctgtttccctgaac Alignment from CESAR acTCCAGCAACTACGCTACTTTTCTCTTCAATGCCTTTGACACCAACCATGATGGC-TCTGTCAGTTTTGAG ccaaggagaagtgggtatgcctgcctgactgacacacttgttgcactcagacTCCAGCAACTACGCTACTTTCCTCTTCAATGCCTTTGACACCAACCATGATGGCCTCTGTCAGTTTTGAGgtgagccaggagagatgatgggccaaacaaacaagcctgtttccctgaac Alignment from Spaln_aa2Genome ACTCCAGCAACTACGCTACTTTTCTCTTCAATGCCTTTGACACCAACCATGATGGC-TCTGTCAGTTTTGAG ccaaggagaagtgggtatgcctgcctgactgacacacttgttgcactcagACTCCAGCAACTACGCTACTTTCCTCTTCAATGCCTTTGACACCAACCATGATGGCcTCTGTCAGTTTTGAGgtgagccaggagagatgatgggccaaacaaacaagcctgtttccctgaac Alignment from Spaln_nt2Genome ACTCCAGCAACTACGCTACTTTTCTCTTCAATGCCTTTGACACCAACCATGATGG-CTCTGTCAGTTTTGAG ccaaggagaagtgggtatgcctgcctgactgacacacttgttgcactcagACTCCAGCAACTACGCTACTTTCCTCTTCAATGCCTTTGACACCAACCATGATGGCCTCTGTCAGTTTTGAGgtgagccaggagagatgatgggccaaacaaacaagcctgtttccctgaac Alignment from Pairagon ACTCCAGCAACTACGCTACTTTTCTCTTCAATGCCTTTGACACCAACCATGATGG-CTCTGTCAGTTTTGAG ccaaggagaagtgggtatgcctgcctgactgacacacttgttgcactcagACTCCAGCAACTACGCTACTTTCCTCTTCAATGCCTTTGACACCAACCATGATGGCCTCTGTCAGTTTTGAGgtgagccaggagagatgatgggccaaacaaacaagcctgtttccctgaac Alignment from Exonerate_protein2genome ACTCCAGCAACTACGCTACTTTTCTCTTCAATGCCTTTGACACCAACCATGATGGC-TCTGTCAGTTTTGAG ccaaggagaagtgggtatgcctgcctgactgacacacttgttgcactcagACTCCAGCAACTACGCTACTTTCCTCTTCAATGCCTTTGACACCAACCATGATGGCCTCTGTCAGTTTTGAGgtgagccaggagagatgatgggccaaacaaacaagcctgtttccctgaac Alignment from Exonerate_coding2genome ACTCCAGCAACTACGCTACTTTTCTCTTCAATGCCTTTGACACCAACCATGATGGC-TCTGTCAGTTTTGAG ccaaggagaagtgggtatgcctgcctgactgacacacttgttgcactcagACTCCAGCAACTACGCTACTTTCCTCTTCAATGCCTTTGACACCAACCATGATGGCCTCTGTCAGTTTTGAGgtgagccaggagagatgatgggccaaacaaacaagcctgtttccctgaac Alignment from GeneWise ACTCCAGCAACTACGCTACTTTTCTCTTCAATGCCTTTGACACCAACCATGATGGCTCTGTC-- ccaaggagaagtgggtatgcctgcctgactgacacacttgttgcactcagACTCCAGCAACTACGCTACTTTCCTCTTCAATGCCTTTGACACCAACCATGATGGCCTCTGTCAgttttgaggtgagccaggagagatgatgggccaaacaaacaagcctgtttccctgaac #### Klc2_ID852_14 --> 1 - 0 Original Alignment gATGAAGAGGGCCAGC-TCTCTTAACTTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAG cttcatcatctcatctaatatcaccaaaaagaaaatgctttcctttttaggATGAAGAGGGCCAGCCTCTCTTAACTTCCTTAACAAGAGTGTCAAGGAGCCAGTCCAGgtgagtatggagggcccctgatactaggcagcccagacccaggccattgg Alignment from CESAR gATGAAGAGGGCCAGC-TCTCTTAACTTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAG cttcatcatctcatctaatatcaccaaaaagaaaatgctttcctttttaggATGAAGAGGGCCAGCCTCTCTTAACTTCCTTAACAAGAGTGTCAAGGAGCCAGTCCAGgtgagtatggagggcccctgatactaggcagcccagacccaggccattgg Alignment from Spaln_aa2Genome GATGAAGAGGGCCAGC-TCTCTTAACTTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAG cttcatcatctcatctaatatcaccaaaaagaaaatgctttcctttttagGATGAAGAGGGCCAGCcTCTCTTAACTTCCTTAACAAGAGTGTCAAGGAGCCAGTCCAGgtgagtatggagggcccctgatactaggcagcccagacccaggccattgg Alignment from Spaln_nt2Genome GATGAAGAGGGCCAG-CTCTCTTAACTTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAG cttcatcatctcatctaatatcaccaaaaagaaaatgctttcctttttagGATGAAGAGGGCCAGCCTCTCTTAACTTCCTTAACAAGAGTGTCAAGGAGCCAGTCCAGgtgagtatggagggcccctgatactaggcagcccagacccaggccattgg Alignment from Pairagon GATGAAGAGGGCCAG-CTCTCTTAACTTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAG cttcatcatctcatctaatatcaccaaaaagaaaatgctttcctttttagGATGAAGAGGGCCAGCCTCTCTTAACTTCCTTAACAAGAGTGTCAAGGAGCCAGTCCAGgtgagtatggagggcccctgatactaggcagcccagacccaggccattgg Alignment from Exonerate_protein2genome GATGAAGAGGGCCAGC-TCTCTTAACTTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAG cttcatcatctcatctaatatcaccaaaaagaaaatgctttcctttttagGATGAAGAGGGCCAGCCTCTCTTAACTTCCTTAACAAGAGTGTCAAGGAGCCAGTCCAGgtgagtatggagggcccctgatactaggcagcccagacccaggccattgg Alignment from Exonerate_coding2genome GATGAAGAGGGCCAGC-TCTCTTAACTTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAG cttcatcatctcatctaatatcaccaaaaagaaaatgctttcctttttagGATGAAGAGGGCCAGCCTCTCTTAACTTCCTTAACAAGAGTGTCAAGGAGCCAGTCCAGgtgagtatggagggcccctgatactaggcagcccagacccaggccattgg Alignment from GeneWise GATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAG cttcatcatctcatctaatatcaccaaaaagaaaatgctttcctttttaggatgaagA------GGGCCAGCCTCTCTTAACTTCCTTAACAAGAGTGTCAAGGAGCCAGTCCAGgtgagtatggagggcccctgatactaggcagcccagacccaggccattgg #### Klc2_ID853_13 --> 0 - 2 Original Alignment GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGG-AAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTag ggcgggctgtaagactacaaagcagggcatcagctgtcttccccacacagGACGGCAGCGGCTCTCTTCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGCAAGCTGCAGGGAGGGGGCCCGCAGGAGCCCCCTAACTCTaggcaaggtgttggccctcccatccttctgagaaaacactgtcgctagaaaa Alignment from CESAR GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGG-AAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTag ggcgggctgtaagactacaaagcagggcatcagctgtcttccccacacagGACGGCAGCGGCTCTCTTCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGCAAGCTGCAGGGAGGGGGCCCGCAGGAGCCCCCTAACTCTaggcaaggtgttggccctcccatccttctgagaaaacactgtcgctagaaaa Alignment from Spaln_aa2Genome GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGG-AAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG ggcgggctgtaagactacaaagcagggcatcagctgtcttccccacacagGACGGCAGCGGCTCTCTTCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGcAAGCTGCAGGGAGGGGGCCCGCAGGAGCCCCCTAACTCTAGgcaaggtgttggccctcccatccttctgagaaaacactgtcgctagaaaa Alignment from Spaln_nt2Genome GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGG-AAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG ggcgggctgtaagactacaaagcagggcatcagctgtcttccccacacagGACGGCAGCGGCTCTCTTCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGCAAGCTGCAGGGAGGGGGCCCGCAGGAGCCCCCTAACTCTAGgcaaggtgttggccctcccatccttctgagaaaacactgtcgctagaaaa Alignment from Pairagon GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGG-AAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG ggcgggctgtaagactacaaagcagggcatcagctgtcttccccacacagGACGGCAGCGGCTCTCTTCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGCAAGCTGCAGGGAGGGGGCCCGCAGGAGCCCCCTAACTCTAGgcaaggtgttggccctcccatccttctgagaaaacactgtcgctagaaaa Alignment from Exonerate_protein2genome GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGG-AAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG ggcgggctgtaagactacaaagcagggcatcagctgtcttccccacacagGACGGCAGCGGCTCTCTTCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGCAAGCTGCAGGGAGGGGGCCCGCAGGAGCCCCCTAACTCTAGgcaaggtgttggccctcccatccttctgagaaaacactgtcgctagaaaa Alignment from Exonerate_coding2genome GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGG-AAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG ggcgggctgtaagactacaaagcagggcatcagctgtcttccccacacagGACGGCAGCGGCTCTCTTCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGCAAGCTGCAGGGAGGGGGCCCGCAGGAGCCCCCTAACTCTAGgcaaggtgttggccctcccatccttctgagaaaacactgtcgctagaaaa Alignment from GeneWise GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGG-AAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAGGATGAAG ggcgggctgtaagactacaaagcagggcatcagctgtcttccccacacagGACGGCAGCGGCTCTCTTCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGCAAGCTGCAGGGAGGGGGCCCGCAGGAGCCCCCTAACTCTAGGCAAGGTgttggccctcccatccttctgagaaaacactgtcgctagaaaa #### Klc2_ID854_12 --> 0 - 0 Original Alignment GGCCTGGATCCTGCCAGCCAGACCAAG-GTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gagacttcatgtgtactttggtcgtgccctatgctccttggtccctgcagGGGCTAGATCCTGCCAGTCAGACCAAGCGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGAGCCTGCGGCTGAGTGGAGTGGGgtgagtgtggagtctgaggcgggctgtaagactacaaagcagggcactca Alignment from CESAR GGCCTGGATCCTGCCAGCCAGACCAAG-GTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gagacttcatgtgtactttggtcgtgccctatgctccttggtccctgcagGGGCTAGATCCTGCCAGTCAGACCAAGCGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGAGCCTGCGGCTGAGTGGAGTGGGgtgagtgtggagtctgaggcgggctgtaagactacaaagcagggcatcag Alignment from Spaln_aa2Genome GGCCTGGATCCTGCCAGCCAGACCAAG-GTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gagacttcatgtgtactttggtcgtgccctatgctccttggtccctgcagGGGCTAGATCCTGCCAGTCAGACCAAGcGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGAGCCTGCGGCTGAGTGGAGTGGGgtgagtgtggagtctgaggcgggctgtaagactacaaagcagggcactca Alignment from Spaln_nt2Genome GGCCTGGATCCTGCCAGCCAGACCAAG-GTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gagacttcatgtgtactttggtcgtgccctatgctccttggtccctgcagGGGCTAGATCCTGCCAGTCAGACCAAGCGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGAGCCTGCGGCTGAGTGGAGTGGGgtgagtgtggagtctgaggcgggctgtaagactacaaagcagggcactca Alignment from Pairagon GGCCTGGATCCTGCCAGCCAGACCAAG-GTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gagacttcatgtgtactttggtcgtgccctatgctccttggtccctgcagGGGCTAGATCCTGCCAGTCAGACCAAGCGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGAGCCTGCGGCTGAGTGGAGTGGGgtgagtgtggagtctgaggcgggctgtaagactacaaagcagggcactca Alignment from Exonerate_protein2genome GGCCTGGATCCTGCCAGCCAGACCAAG-GTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gagacttcatgtgtactttggtcgtgccctatgctccttggtccctgcagGGGCTAGATCCTGCCAGTCAGACCAAGCGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGAGCCTGCGGCTGAGTGGAGTGGGgtgagtgtggagtctgaggcgggctgtaagactacaaagcagggcactca Alignment from Exonerate_coding2genome GGCCTGGATCCTGCCAGCCAGACCAAG-GTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gagacttcatgtgtactttggtcgtgccctatgctccttggtccctgcagGGGCTAGATCCTGCCAGTCAGACCAAGCGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGAGCCTGCGGCTGAGTGGAGTGGGgtgagtgtggagtctgaggcgggctgtaagactacaaagcagggcactca Alignment from GeneWise GGCCTGGATCCTGCCAGCCAGACCAAG-GTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gagacttcatgtgtactttggtcgtgccctatgctccttggtccctgcagGGGCTAGATCCTGCCAGTCAGACCAAGCGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGAGCCTGCGGCTGAGTGGAGTGGGgtgagtgtggagtctgaggcgggctgtaagactacaaagcagggcactca #### Klc2_ID856_10 --> 0 - 2 Original Alignment GATAAGCGCCGGGACAGCGCCCCCTATGGGGAGTATGGCAGCTGGTACAAA-GCCTGTAAAGTTGACag gaaggagcctggcttactcctgcctctcgatactctttgtcttattccagGATAAGCGCCGGGACAGTGCCCCCTATGGGGAATATGGCAGCTGGTACAAACGCCTGCAAAGTTGACaggtgagggctgagctgacagacctgcggcagaaggctaccacagaaggagc Alignment from CESAR GATAAGCGCCGGGACAGCGCCCCCTATGGGGAGTATGGCAGCTGGTACAAA-GCCTGTAAAGTTGACag gaaggagcctggcttactcctgcctctcgatactctttgtcttattccagGATAAGCGCCGGGACAGTGCCCCCTATGGGGAATATGGCAGCTGGTACAAACGCCTGCAAAGTTGACaggtgagggctgagctgacagacctgcggcagaaggctaccacagaaggagc Alignment from Spaln_aa2Genome GATAAGCGCCGGGACAGCGCCCCCTATGGGGAGTATGGCAGCTGGTACAAA-GCCTGTAAAGTTGACAG gaaggagcctggcttactcctgcctctcgatactctttgtcttattccagGATAAGCGCCGGGACAGTGCCCCCTATGGGGAATATGGCAGCTGGTACAAAcGCCTGCAAAGTTGACAGgtgagggctgagctgacagacctgcggcagaaggctaccacagaaggagc Alignment from Spaln_nt2Genome GATAAGCGCCGGGACAGCGCCCCCTATGGGGAGTATGGCAGCTGGTACAAA-GCCTGTAAAGTTGACAG gaaggagcctggcttactcctgcctctcgatactctttgtcttattccagGATAAGCGCCGGGACAGTGCCCCCTATGGGGAATATGGCAGCTGGTACAAACGCCTGCAAAGTTGACAGgtgagggctgagctgacagacctgcggcagaaggctaccacagaaggagc Alignment from Pairagon GATAAGCGCCGGGACAGCGCCCCCTATGGGGAGTATGGCAGCTGGTACAAA-GCCTGTAAAGTTGACAG gaaggagcctggcttactcctgcctctcgatactctttgtcttattccagGATAAGCGCCGGGACAGTGCCCCCTATGGGGAATATGGCAGCTGGTACAAACGCCTGCAAAGTTGACAGgtgagggctgagctgacagacctgcggcagaaggctaccacagaaggagc Alignment from Exonerate_protein2genome GATAAGCGCCGGGACAGCGCCCCCTATGGGGAGTATGGCAGCTGGTACAAA-GCCTGTAAAGTTGACAG gaaggagcctggcttactcctgcctctcgatactctttgtcttattccagGATAAGCGCCGGGACAGTGCCCCCTATGGGGAATATGGCAGCTGGTACAAACGCCTGCAAAGTTGACAGgtgagggctgagctgacagacctgcggcagaaggctaccacagaaggagc Alignment from Exonerate_coding2genome GATAAGCGCCGGGACAGCGCCCCCTATGGGGAGTATGGCAGCTGGTACAAA-GCCTGTAAAGTTGACAG gaaggagcctggcttactcctgcctctcgatactctttgtcttattccagGATAAGCGCCGGGACAGTGCCCCCTATGGGGAATATGGCAGCTGGTACAAACGCCTGCAAAGTTGACAGgtgagggctgagctgacagacctgcggcagaaggctaccacagaaggagc Alignment from GeneWise GATAAGCGCCGGGACAGCGCCCCCTATGGGGAGTATGGCAGCTGGTACAAA-GCCTGTAAAGTTGACAG gaaggagcctggcttactcctgcctctcgatactctttgtcttattccagGATAAGCGCCGGGACAGTGCCCCCTATGGGGAATATGGCAGCTGGTACAAACGCCTGCAAAGTTGACAGgtgagggctgagctgacagacctgcggcagaaggctaccacagaaggagc #### Klc2_ID858_8 --> 0 - 1 Original Alignment GCTTCCTGCTACCTGAAACAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTT-ACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATg tgaaaactaagcttcctgcagtctgctcagctctcttctctcctgtgtagGCTTCTTGCTACCTGAAGCAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTTCACCCGTGCGCATGAAAAGGAGTTTGGCTCAGTCAATggtaacaccatagttggaatgtacctccagttcattaaacacacgcttacg Alignment from CESAR GCTTCCTGCTACCTGAAACAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTT-ACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATg tgaaaactaagcttcctgcagtctgctcagctctcttctctcctgtgtagGCTTCTTGCTACCTGAAGCAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTTCACCCGTGCGCATGAAAAGGAGTTTGGCTCAGTCAATggtaacaccatagttggaatgtacctccagttcattaaacacacgcttacg Alignment from Spaln_aa2Genome GCTTCCTGCTACCTGAAACAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTT-ACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATG tgaaaactaagcttcctgcagtctgctcagctctcttctctcctgtgtagGCTTCTTGCTACCTGAAGCAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTTcACCCGTGCGCATGAAAAGGAGTTTGGCTCAGTCAATGgtaacaccatagttggaatgtacctccagttcattaaacacacgcttacg Alignment from Spaln_nt2Genome GCTTCCTGCTACCTGAAACAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTT-ACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATG tgaaaactaagcttcctgcagtctgctcagctctcttctctcctgtgtagGCTTCTTGCTACCTGAAGCAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTTCACCCGTGCGCATGAAAAGGAGTTTGGCTCAGTCAATGgtaacaccatagttggaatgtacctccagttcattaaacacacgcttacg Alignment from Pairagon GCTTCCTGCTACCTGAAACAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTT-ACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATG tgaaaactaagcttcctgcagtctgctcagctctcttctctcctgtgtagGCTTCTTGCTACCTGAAGCAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTTCACCCGTGCGCATGAAAAGGAGTTTGGCTCAGTCAATGgtaacaccatagttggaatgtacctccagttcattaaacacacgcttacg Alignment from Exonerate_protein2genome GCTTCCTGCTACCTGAAACAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTT-ACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATG tgaaaactaagcttcctgcagtctgctcagctctcttctctcctgtgtagGCTTCTTGCTACCTGAAGCAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTTCACCCGTGCGCATGAAAAGGAGTTTGGCTCAGTCAATGgtaacaccatagttggaatgtacctccagttcattaaacacacgcttacg Alignment from Exonerate_coding2genome GCTTCCTGCTACCTGAAACAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTT-ACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATG tgaaaactaagcttcctgcagtctgctcagctctcttctctcctgtgtagGCTTCTTGCTACCTGAAGCAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTTCACCCGTGCGCATGAAAAGGAGTTTGGCTCAGTCAATGgtaacaccatagttggaatgtacctccagttcattaaacacacgcttacg Alignment from GeneWise GCTTCCTGCTACCTGAAACAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATC-CTTACCCGTGCGCACGAGAAGGAGTTTGGCTCAGTCAATG tgaaaactaagcttcctgcagtctgctcagctctcttctctcctgtgtagGCTTCTTGCTACCTGAAGCAGGGCAAGTACCAGGATGCAGAGACCCTGTACAAGGAGATCCTTCACCCGTGCGCATGAAAAGGAGTTTGGCTCAGTCAATGgtaacaccatagttggaatgtacctccagttcattaaacacacgcttacg #### Klc2_ID859_7 --> 0 - 0 Original Alignment GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTG-GCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaatcttggcaactctgaaacccccccctctgtccttgaagGTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGCGCCTTGCTGTGCCAGAATCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGAAGACCCCAATGTGGCGAAGACCAAGAACAACCTGgtgagctgtagctgggtgggaagctagtaaggaaggaggcagggagggag Alignment from CESAR GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTG-GCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaatcttggcaactctgaaacccccccctctgtccttgaagGTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGCGCCTTGCTGTGCCAGAATCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGAAGACCCCAATGTGGCGAAGACCAAGAACAACCTGgtgagctgtagctgggtgggaagctagtaaggaaggaggcagggagggag Alignment from Spaln_aa2Genome GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTG-GCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaatcttggcaactctgaaacccccccctctgtccttgaagGTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGcGCCTTGCTGTGCCAGAATCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGAAGACCCCAATGTGGCGAAGACCAAGAACAACCTGgtgagctgtagctgggtgggaagctagtaaggaaggaggcagggagggag Alignment from Spaln_nt2Genome GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTG-GCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaatcttggcaactctgaaacccccccctctgtccttgaagGTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGCGCCTTGCTGTGCCAGAATCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGAAGACCCCAATGTGGCGAAGACCAAGAACAACCTGgtgagctgtagctgggtgggaagctagtaaggaaggaggcagggagggag Alignment from Pairagon GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTG-GCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaatcttggcaactctgaaacccccccctctgtccttgaagGTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGCGCCTTGCTGTGCCAGAATCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGAAGACCCCAATGTGGCGAAGACCAAGAACAACCTGgtgagctgtagctgggtgggaagctagtaaggaaggaggcagggagggag Alignment from Exonerate_protein2genome GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTG-GCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaatcttggcaactctgaaacccccccctctgtccttgaagGTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGCGCCTTGCTGTGCCAGAATCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGAAGACCCCAATGTGGCGAAGACCAAGAACAACCTGgtgagctgtagctgggtgggaagctagtaaggaaggaggcagggagggag Alignment from Exonerate_coding2genome GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTG-GCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaatcttggcaactctgaaacccccccctctgtccttgaagGTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGCGCCTTGCTGTGCCAGAATCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGAAGACCCCAATGTGGCGAAGACCAAGAACAACCTGgtgagctgtagctgggtgggaagctagtaaggaaggaggcagggagggag Alignment from GeneWise GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTG-GCCTTGCTGTGCCAGAACCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caaacagtagaatcttggcaactctgaaacccccccctctgtccttgaagGTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGCGCCTTGCTGTGCCAGAATCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGAAGACCCCAATGTGGCGAAGACCAAGAACAACCTGgtgagctgtagctgggtgggaagctagtaaggaaggaggcagggagggag #### Klc2_ID860_6 --> 0 - 0 Original Alignment GTGGCTGCGACCCTCAACAATCTGGCT-GTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG cctgcctgctagggccctgaatgaagactccccctctgtttttctaatagGTGGCTGCGACCCTCAACAATCTGGCTCGTGCTCTATGGCAAACGGGGCAAGTACCAAGAAGCTGAGCCACTTTGCAAGAGAGCGCTGGAAATCCGGGAGAAGgtaaatacaggcagggccaagagtgctgggcaaacagtagaatcttggca Alignment from CESAR GTGGCTGCGACCCTCAACAATCTGGCT-GTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG cctgcctgctagggccctgaatgaagactccccctctgtttttctaatagGTGGCTGCGACCCTCAACAATCTGGCTCGTGCTCTATGGCAAACGGGGCAAGTACCAAGAAGCTGAGCCACTTTGCAAGAGAGCGCTGGAAATCCGGGAGAAGgtaaatacaggcagggccaagagtgctgggcaaacagtagaatcttggca Alignment from Spaln_aa2Genome GTGGCTGCGACCCTCAACAATCTGGCT-GTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG cctgcctgctagggccctgaatgaagactccccctctgtttttctaatagGTGGCTGCGACCCTCAACAATCTGGCTcGTGCTCTATGGCAAACGGGGCAAGTACCAAGAAGCTGAGCCACTTTGCAAGAGAGCGCTGGAAATCCGGGAGAAGgtaaatacaggcagggccaagagtgctgggcaaacagtagaatcttggca Alignment from Spaln_nt2Genome GTGGCTGCGACCCTCAACAATCTGGCT-GTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG cctgcctgctagggccctgaatgaagactccccctctgtttttctaatagGTGGCTGCGACCCTCAACAATCTGGCTCGTGCTCTATGGCAAACGGGGCAAGTACCAAGAAGCTGAGCCACTTTGCAAGAGAGCGCTGGAAATCCGGGAGAAGgtaaatacaggcagggccaagagtgctgggcaaacagtagaatcttggca Alignment from Pairagon GTGGCTGCGACCCTCAACAATCTGGCT-GTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG cctgcctgctagggccctgaatgaagactccccctctgtttttctaatagGTGGCTGCGACCCTCAACAATCTGGCTCGTGCTCTATGGCAAACGGGGCAAGTACCAAGAAGCTGAGCCACTTTGCAAGAGAGCGCTGGAAATCCGGGAGAAGgtaaatacaggcagggccaagagtgctgggcaaacagtagaatcttggca Alignment from Exonerate_protein2genome GTGGCTGCGACCCTCAACAATCTGGCT-GTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG cctgcctgctagggccctgaatgaagactccccctctgtttttctaatagGTGGCTGCGACCCTCAACAATCTGGCTCGTGCTCTATGGCAAACGGGGCAAGTACCAAGAAGCTGAGCCACTTTGCAAGAGAGCGCTGGAAATCCGGGAGAAGgtaaatacaggcagggccaagagtgctgggcaaacagtagaatcttggca Alignment from Exonerate_coding2genome GTGGCTGCGACCCTCAACAATCTGGCT-GTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG cctgcctgctagggccctgaatgaagactccccctctgtttttctaatagGTGGCTGCGACCCTCAACAATCTGGCTCGTGCTCTATGGCAAACGGGGCAAGTACCAAGAAGCTGAGCCACTTTGCAAGAGAGCGCTGGAAATCCGGGAGAAGgtaaatacaggcagggccaagagtgctgggcaaacagtagaatcttggca Alignment from GeneWise GTGGCTGCGACCCTCAACAATCTG-GCTGTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG cctgcctgctagggccctgaatgaagactccccctctgtttttctaatagGTGGCTGCGACCCTCAACAATCTGGCTCGTGCTCTATGGCAAACGGGGCAAGTACCAAGAAGCTGAGCCACTTTGCAAGAGAGCGCTGGAAATCCGGGAGAAGgtaaatacaggcagggccaagagtgctgggcaaacagtagaatcttggca #### Ldb1_ID9691_9 --> 0 - 1 Original Alignment CTCTGTGTGATACTAGAGCCC-ATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCg tccgggtctatttcccttagaggccaattaacactctgccttgaccacagCTCTGTGTGATACTAGAGCCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCCggctccttccttgccccagccctctacagacccttgatgaaatagctgagg Alignment from CESAR CTCTGTGTGATACTAGAGCCC-ATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCg tccgggtctatttcccttagaggccaattaacactctgccttgaccacagCTCTGTGTGATACTAGAGCCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCCggctccttccttgccccagccctctacagacccttgatgaaatagctgagg Alignment from Spaln_aa2Genome CTCTGTGTGATACTAGAG-CCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG tccgggtctatttcccttagaggccaattaacactctgccttgaccacagCTCTGTGTGATACTAGAGcCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCCGgctccttccttgccccagccctctacagacccttgatgaaatagctgagg Alignment from Spaln_nt2Genome CTCTGTGTGATACTAGAG-CCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG tccgggtctatttcccttagaggccaattaacactctgccttgaccacagCTCTGTGTGATACTAGAGCCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCCGgctccttccttgccccagccctctacagacccttgatgaaatagctgagg Alignment from Pairagon CTCTGTGTGATACTAGAG-CCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG tccgggtctatttcccttagaggccaattaacactctgccttgaccacagCTCTGTGTGATACTAGAGCCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCCGgctccttccttgccccagccctctacagacccttgatgaaatagctgagg Alignment from Exonerate_protein2genome CTCTGTGTGATACTAGAG-CCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG tccgggtctatttcccttagaggccaattaacactctgccttgaccacagCTCTGTGTGATACTAGAGCCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCCGgctccttccttgccccagccctctacagacccttgatgaaatagctgagg Alignment from Exonerate_coding2genome CTCTGTGTGATACTAGAG-CCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG tccgggtctatttcccttagaggccaattaacactctgccttgaccacagCTCTGTGTGATACTAGAGCCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCCGgctccttccttgccccagccctctacagacccttgatgaaatagctgagg Alignment from GeneWise CTCTGTGTGATACTA-GAGCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCGCGGAG tccgggtctatttcccttagaggccaattaacactctgccttgaccacagCTCTGTGTGATACTAGAGCCCCATGCAGGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGA------------------ATGgtagcacctcccggctccttccttgccccagccctctacagacccttgatgaaatagctgagg #### Ldb1_ID9692_8 --> 0 - 0 Original Alignment GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGT-GGGCTGTCCAATTCCACTCTCAACTACCTCCGA tgattttttgctcagatgacctgatacccagtaatctctgattgttgtagGCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACTCGGTGTCGGGCTGTCGAATTCTGCTCTCAACTACCTCCGAgtatagctcagatgatcctggtgttgtcccagcctttattatctgagctc Alignment from CESAR GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGT-GGGCTGTCCAATTCCACTCTCAACTACCTCCGA tgattttttgctcagatgacctgatacccagtaatctctgattgttgtagGCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACTCGGTGTCGGGCTGTCGAATTCTGCTCTCAACTACCTCCGAgtatagctcagatgatcctggtgttgtcccagcctttattatctgagctc Alignment from Spaln_aa2Genome GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGT-GGGCTGTCCAATTCCACTCTCAACTACCTCCGA tgattttttgctcagatgacctgatacccagtaatctctgattgttgtagGCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACTCGGTGTcGGGCTGTCGAATTCTGCTCTCAACTACCTCCGAgtatagctcagatgatcctggtgttgtcccagcctttattatctgagctc Alignment from Spaln_nt2Genome GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGT-GGGCTGTCCAATTCCACTCTCAACTACCTCCGA tgattttttgctcagatgacctgatacccagtaatctctgattgttgtagGCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACTCGGTGTCGGGCTGTCGAATTCTGCTCTCAACTACCTCCGAgtatagctcagatgatcctggtgttgtcccagcctttattatctgagctc Alignment from Pairagon GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGT-GGGCTGTCCAATTCCACTCTCAACTACCTCCGA tgattttttgctcagatgacctgatacccagtaatctctgattgttgtagGCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACTCGGTGTCGGGCTGTCGAATTCTGCTCTCAACTACCTCCGAgtatagctcagatgatcctggtgttgtcccagcctttattatctgagctc Alignment from Exonerate_protein2genome GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGT-GGGCTGTCCAATTCCACTCTCAACTACCTCCGA tgattttttgctcagatgacctgatacccagtaatctctgattgttgtagGCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACTCGGTGTCGGGCTGTCGAATTCTGCTCTCAACTACCTCCGAgtatagctcagatgatcctggtgttgtcccagcctttattatctgagctc Alignment from Exonerate_coding2genome GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGT-GGGCTGTCCAATTCCACTCTCAACTACCTCCGA tgattttttgctcagatgacctgatacccagtaatctctgattgttgtagGCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACTCGGTGTCGGGCTGTCGAATTCTGCTCTCAACTACCTCCGAgtatagctcagatgatcctggtgttgtcccagcctttattatctgagctc Alignment from GeneWise GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGT-GGGCTGTCCAATTCCACTCTCAACTACCTCCGA tgattttttgctcagatgacctgatacccagtaatctctgattgttgtagGCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACTCGGTGTCGGGCTGTCGAATTCTGCTCTCAACTACCTCCGAgtatagctcagatgatcctggtgttgtcccagcctttattatctgagctc #### Ldb1_ID9696_4 --> 1 - 0 Original Alignment gAGGCACACACCATATGGTAACCAAACCGACTATAGAATA-TTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ggggtggaataccacaactcagctactgctaacagtgtcttctcttgcaggAGGCACACCCCATATGGTAACCAAACTGACTATAGAATACTTTGAGCTTAACAAACGGCTACAGAACTGGACAGAGgtgagtcagggagagggagccgggtccagaggagagctcctgtgagatat Alignment from CESAR gAGGCACACACCATATGGTAACCAAACCGACTATAGAATA-TTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ggggtggaataccacaactcagctactgctaacagtgtcttctcttgcaggAGGCACACCCCATATGGTAACCAAACTGACTATAGAATACTTTGAGCTTAACAAACGGCTACAGAACTGGACAGAGgtgagtcagggagagggagccgggtccagaggagagctcctgtgagatat Alignment from Spaln_aa2Genome GAGGCACACACCATATGGTAACCAAACCGACTATAGAATA-TTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ggggtggaataccacaactcagctactgctaacagtgtcttctcttgcagGAGGCACACCCCATATGGTAACCAAACTGACTATAGAATAcTTTGAGCTTAACAAACGGCTACAGAACTGGACAGAGgtgagtcagggagagggagccgggtccagaggagagctcctgtgagatat Alignment from Spaln_nt2Genome GAGGCACACACCATATGGTAACCAAACCGACTATAGAATA-TTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ggggtggaataccacaactcagctactgctaacagtgtcttctcttgcagGAGGCACACCCCATATGGTAACCAAACTGACTATAGAATACTTTGAGCTTAACAAACGGCTACAGAACTGGACAGAGgtgagtcagggagagggagccgggtccagaggagagctcctgtgagatat Alignment from Pairagon GAGGCACACACCATATGGTAACCAAACCGACTATAGAATA-TTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ggggtggaataccacaactcagctactgctaacagtgtcttctcttgcagGAGGCACACCCCATATGGTAACCAAACTGACTATAGAATACTTTGAGCTTAACAAACGGCTACAGAACTGGACAGAGgtgagtcagggagagggagccgggtccagaggagagctcctgtgagatat Alignment from Exonerate_protein2genome GAGGCACACACCATATGGTAACCAAACCGACTATAGAATA-TTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ggggtggaataccacaactcagctactgctaacagtgtcttctcttgcagGAGGCACACCCCATATGGTAACCAAACTGACTATAGAATACTTTGAGCTTAACAAACGGCTACAGAACTGGACAGAGgtgagtcagggagagggagccgggtccagaggagagctcctgtgagatat Alignment from Exonerate_coding2genome GAGGCACACACCATATGGTAACCAAACCGACTATAGAATA-TTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ggggtggaataccacaactcagctactgctaacagtgtcttctcttgcagGAGGCACACCCCATATGGTAACCAAACTGACTATAGAATACTTTGAGCTTAACAAACGGCTACAGAACTGGACAGAGgtgagtcagggagagggagccgggtccagaggagagctcctgtgagatat Alignment from GeneWise GAGGCACACACCATATGGTAACCAAACCGACTATAGA-ATATTTGAGCTTAACAAACGGCTACAGAACTGGACAGAG ggggtggaataccacaactcagctactgctaacagtgtcttctcttgcagGAGGCACACCCCATATGGTAACCAAACTGACTATAGAATACTTTGAGCTTAACAAACGGCTACAGAACTGGACAGAGgtgagtcagggagagggagccgggtccagaggagagctcctgtgagatat #### Loxl4_ID8568_7 --> 2 - 0 Original Alignment ggCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTATGAGCGGACCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCA-AACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG cgcagctggggtttacataggagccttacaccatatttgctcttctacagggCTAGGACCAATCCATCTGAGTGAGGTGCGATGCCGGGGGTATGAGCGGACCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCACAATGATGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAGgtaaggttaggcctgaatgccttcgggcaggggcctagggtggcctaact Alignment from CESAR ggCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTATGAGCGGACCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCA-AACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG cgcagctggggtttacataggagccttacaccatatttgctcttctacagggCTAGGACCAATCCATCTGAGTGAGGTGCGATGCCGGGGGTATGAGCGGACCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCACAATGATGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAGgtaaggttaggcctgaatgccttcgggcaggggcctagggtggcctaact Alignment from Spaln_aa2Genome GGCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTATGAGCGGACCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCA-AACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG cgcagctggggtttacataggagccttacaccatatttgctcttctacagGGCTAGGACCAATCCATCTGAGTGAGGTGCGATGCCGGGGGTATGAGCGGACCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCAcAATGATGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAGgtaaggttaggcctgaatgccttcgggcaggggcctagggtggcctaact Alignment from Spaln_nt2Genome GGCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTATGAGCGGACCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCA-AACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG cgcagctggggtttacataggagccttacaccatatttgctcttctacagGGCTAGGACCAATCCATCTGAGTGAGGTGCGATGCCGGGGGTATGAGCGGACCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCACAATGATGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAGgtaaggttaggcctgaatgccttcgggcaggggcctagggtggcctaact Alignment from Pairagon GGCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTATGAGCGGACCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCA-AACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG cgcagctggggtttacataggagccttacaccatatttgctcttctacagGGCTAGGACCAATCCATCTGAGTGAGGTGCGATGCCGGGGGTATGAGCGGACCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCACAATGATGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAGgtaaggttaggcctgaatgccttcgggcaggggcctagggtggcctaact Alignment from Exonerate_protein2genome GGCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTATGAGCGGACCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCA-AACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG cgcagctggggtttacataggagccttacaccatatttgctcttctacagGGCTAGGACCAATCCATCTGAGTGAGGTGCGATGCCGGGGGTATGAGCGGACCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCACAATGATGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAGgtaaggttaggcctgaatgccttcgggcaggggcctagggtggcctaact Alignment from Exonerate_coding2genome GGCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTATGAGCGGACCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCA-AACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG cgcagctggggtttacataggagccttacaccatatttgctcttctacagGGCTAGGACCAATCCATCTGAGTGAGGTGCGATGCCGGGGGTATGAGCGGACCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCACAATGATGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAGgtaaggttaggcctgaatgccttcgggcaggggcctagggtggcctaact Alignment from GeneWise GGCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTATGAGCGGACCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACAT-GCAAACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG cgcagctggggtttacataggagccttacaccatatttgctcttctacagGGCTAGGACCAATCCATCTGAGTGAGGTGCGATGCCGGGGGTATGAGCGGACCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCACAATGATGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAGgtaaggttaggcctgaatgccttcgggcaggggcctagggtggcctaact #### Loxl4_ID8570_5 --> 1 - 0 Original Alignment gCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAG-CTTCGGCCAGCCTGTCCAGGCGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGGCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG ttctcctctctcatccctactcaagcacggtgtctatgtgtctcccacaggCTCAACAGCCTAACAAAAAAGAATTCATTCTGGATTCACAGGGTTGACTGTCTTGGGACAGAGCCCCACTTGGCCAAATGCCAGGTACAGGTGGCACCAGGAAGAGGCAAGCCTTCGGCCAGCCTGTCCAGGTGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGTCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGTAGAGgtaagtccccaggaccctgaccaatctgcaggtgcagaggtcctgaccaa Alignment from CESAR gCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAG-CTTCGGCCAGCCTGTCCAGGCGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGGCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG ttctcctctctcatccctactcaagcacggtgtctatgtgtctcccacaggCTCAACAGCCTAACAAAAAAGAATTCATTCTGGATTCACAGGGTTGACTGTCTTGGGACAGAGCCCCACTTGGCCAAATGCCAGGTACAGGTGGCACCAGGAAGAGGCAAGCCTTCGGCCAGCCTGTCCAGGTGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGTCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGTAGAGgtaagtccccaggaccctgaccaatctgcaggtgcagaggtcctgaccaa Alignment from Spaln_aa2Genome GCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAG-CTTCGGCCAGCCTGTCCAGGCGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGGCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG ttctcctctctcatccctactcaagcacggtgtctatgtgtctcccacagGCTCAACAGCCTAACAAAAAAGAATTCATTCTGGATTCACAGGGTTGACTGTCTTGGGACAGAGCCCCACTTGGCCAAATGCCAGGTACAGGTGGCACCAGGAAGAGGCAAGcCTTCGGCCAGCCTGTCCAGGTGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGTCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGTAGAGgtaagtccccaggaccctgaccaatctgcaggtgcagaggtcctgaccaa Alignment from Spaln_nt2Genome GCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAG-CTTCGGCCAGCCTGTCCAGGCGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGGCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG ttctcctctctcatccctactcaagcacggtgtctatgtgtctcccacagGCTCAACAGCCTAACAAAAAAGAATTCATTCTGGATTCACAGGGTTGACTGTCTTGGGACAGAGCCCCACTTGGCCAAATGCCAGGTACAGGTGGCACCAGGAAGAGGCAAGCCTTCGGCCAGCCTGTCCAGGTGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGTCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGTAGAGgtaagtccccaggaccctgaccaatctgcaggtgcagaggtcctgaccaa Alignment from Pairagon GCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAG-CTTCGGCCAGCCTGTCCAGGCGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGGCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG ttctcctctctcatccctactcaagcacggtgtctatgtgtctcccacagGCTCAACAGCCTAACAAAAAAGAATTCATTCTGGATTCACAGGGTTGACTGTCTTGGGACAGAGCCCCACTTGGCCAAATGCCAGGTACAGGTGGCACCAGGAAGAGGCAAGCCTTCGGCCAGCCTGTCCAGGTGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGTCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGTAGAGgtaagtccccaggaccctgaccaatctgcaggtgcagaggtcctgaccaa Alignment from Exonerate_protein2genome GCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAG-CTTCGGCCAGCCTGTCCAGGCGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGGCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG ttctcctctctcatccctactcaagcacggtgtctatgtgtctcccacagGCTCAACAGCCTAACAAAAAAGAATTCATTCTGGATTCACAGGGTTGACTGTCTTGGGACAGAGCCCCACTTGGCCAAATGCCAGGTACAGGTGGCACCAGGAAGAGGCAAGCCTTCGGCCAGCCTGTCCAGGTGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGTCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGTAGAGgtaagtccccaggaccctgaccaatctgcaggtgcagaggtcctgaccaa Alignment from Exonerate_coding2genome GCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAG-CTTCGGCCAGCCTGTCCAGGCGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGGCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG ttctcctctctcatccctactcaagcacggtgtctatgtgtctcccacagGCTCAACAGCCTAACAAAAAAGAATTCATTCTGGATTCACAGGGTTGACTGTCTTGGGACAGAGCCCCACTTGGCCAAATGCCAGGTACAGGTGGCACCAGGAAGAGGCAAGCCTTCGGCCAGCCTGTCCAGGTGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGTCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGTAGAGgtaagtccccaggaccctgaccaatctgcaggtgcagaggtcctgaccaa Alignment from GeneWise GCTCAACAGCCTGACAAAAAAGAATTCCTTCTGGATTCACCGGGTTGACTGTCTGGGGACAGAGCCCCACTTGGCCAAGTGCCAGGTACAGGTGGCTCCAGGAAGGGGCAAG-CTTCGGCCAGCCTGTCCAGGCGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGGCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGCAGAG ttctcctctctcatccctactcaagcacggtgtctatgtgtctcccacagGCTCAACAGCCTAACAAAAAAGAATTCATTCTGGATTCACAGGGTTGACTGTCTTGGGACAGAGCCCCACTTGGCCAAATGCCAGGTACAGGTGGCACCAGGAAGAGGCAAGCCTTCGGCCAGCCTGTCCAGGTGGCATGCACGCTGTGGTCAGCTGTGTGGCAGGTCCCCACTTCCGCCGACAGAAGCCAAAGCCGACGCGCAAGGAGTCCCATGTAGAGgtaagtccccaggaccctgaccaatctgcaggtgcagaggtcctgaccaa #### Lpxn_ID3473_6 --> 0 - 0 Original Alignment GTGATCCATGCTCTG-GGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT gacaggtacattctgctgcactgccatgcttattttattactgaccacagGTGATCCATGCTCTGCGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGATgtgagtgaagccccaccctgacagctcacatgcactgtctgaccatatga Alignment from CESAR GTGATCCATGCTCTG-GGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT gacaggtacattctgctgcactgccatgcttattttattactgaccacagGTGATCCATGCTCTGCGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGATgtgagtgaagccccaccctgacagctcacatgcactgtctgaccatatga Alignment from Spaln_aa2Genome GTGATCCATGCTCTG-GGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT gacaggtacattctgctgcactgccatgcttattttattactgaccacagGTGATCCATGCTCTGcGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGATgtgagtgaagccccaccctgacagctcacatgcactgtctgaccatatga Alignment from Spaln_nt2Genome GTGATCCATGCTCTG-GGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT gacaggtacattctgctgcactgccatgcttattttattactgaccacagGTGATCCATGCTCTGCGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGATgtgagtgaagccccaccctgacagctcacatgcactgtctgaccatatga Alignment from Pairagon GTGATCCATGCTCTG-GGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT gacaggtacattctgctgcactgccatgcttattttattactgaccacagGTGATCCATGCTCTGCGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGATgtgagtgaagccccaccctgacagctcacatgcactgtctgaccatatga Alignment from Exonerate_protein2genome GTGATCCATGCTCTG-GGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT gacaggtacattctgctgcactgccatgcttattttattactgaccacagGTGATCCATGCTCTGCGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGATgtgagtgaagccccaccctgacagctcacatgcactgtctgaccatatga Alignment from Exonerate_coding2genome GTGATCCATGCTCTG-GGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT gacaggtacattctgctgcactgccatgcttattttattactgaccacagGTGATCCATGCTCTGCGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGATgtgagtgaagccccaccctgacagctcacatgcactgtctgaccatatga Alignment from GeneWise ---ATCCATGCT-CTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT gacaggtacattctgctgcactgccatgcttattttattactgaccacagGTGATCCATGCTCTGCGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGATgtgagtgaagccccaccctgacagctcacatgcactgtctgaccatatga #### Ltbp3_ID1251_3 --> 2 - 0 Original Alignment tgCAGGCTCCGCCCCCCGTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTG-CACCGCATCGAGGGGCCGAACGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCGCATCCCAAGCCCCAGCACCCGAGGCCACCCACCCAAAAGCCACTGGGCCGCTGCTTCCAGGACACATTGCCCAAGCAGCCT caccataaccctgcagggggaggctgagtcgctctctatttttcaatcagtgCAGGCTCCGCCCTCCCTGGTGAATGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCCACCGCATTGAAGGGCCAAATGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCACATCCCAAGCCCCAGCACCCGAGGCCCCCCACCCAAAAGCCGCTGGGCCGCTGCTTCCAGGACACATCGCCCAAGCAGCCTgtaagtgaagccacaattccaaaagaacagtcattctatttaagggtcac Alignment from CESAR tgCAGGCTCCGCCCCCCGTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTG-CACCGCATCGAGGGGCCGAACGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCGCATCCCAAGCCCCAGCACCCGAGGCCACCCACCCAAAAGCCACTGGGCCGCTGCTTCCAGGACACATTGCCCAAGCAGCCT caccataaccctgcagggggaggctgagtcgctctctatttttcaatcagtgCAGGCTCCGCCCTCCCTGGTGAATGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCCACCGCATTGAAGGGCCAAATGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCACATCCCAAGCCCCAGCACCCGAGGCCCCCCACCCAAAAGCCGCTGGGCCGCTGCTTCCAGGACACATCGCCCAAGCAGCCTgtaagtgaagccacaattccaaaagaacagtcattctatttaagggtcac Alignment from Spaln_aa2Genome TGCAGGCTCCGCCCCCCGTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTG-CACCGCATCGAGGGGCCGAACGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCGCATCCCAAGCCCCAGCACCCGAGGCCACCCACCCAAAAGCCACTGGGCCGCTGCTTCCAGGACACATTGCCCAAGCAGCCT caccataaccctgcagggggaggctgagtcgctctctatttttcaatcagTGCAGGCTCCGCCCTCCCTGGTGAATGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGcCACCGCATTGAAGGGCCAAATGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCACATCCCAAGCCCCAGCACCCGAGGCCCCCCACCCAAAAGCCGCTGGGCCGCTGCTTCCAGGACACATCGCCCAAGCAGCCTgtaagtgaagccacaattccaaaagaacagtcattctatttaagggtcac Alignment from Spaln_nt2Genome TGCAGGCTCCGCCCCCCGTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTG-CACCGCATCGAGGGGCCGAACGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCGCATCCCAAGCCCCAGCACCCGAGGCCACCCACCCAAAAGCCACTGGGCCGCTGCTTCCAGGACACATTGCCCAAGCAGCCT caccataaccctgcagggggaggctgagtcgctctctatttttcaatcagTGCAGGCTCCGCCCTCCCTGGTGAATGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCCACCGCATTGAAGGGCCAAATGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCACATCCCAAGCCCCAGCACCCGAGGCCCCCCACCCAAAAGCCGCTGGGCCGCTGCTTCCAGGACACATCGCCCAAGCAGCCTgtaagtgaagccacaattccaaaagaacagtcattctatttaagggtcac Alignment from Pairagon TGCAGGCTCCGCCCCCCGTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTG-CACCGCATCGAGGGGCCGAACGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCGCATCCCAAGCCCCAGCACCCGAGGCCACCCACCCAAAAGCCACTGGGCCGCTGCTTCCAGGACACATTGCCCAAGCAGCCT caccataaccctgcagggggaggctgagtcgctctctatttttcaatcagTGCAGGCTCCGCCCTCCCTGGTGAATGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCCACCGCATTGAAGGGCCAAATGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCACATCCCAAGCCCCAGCACCCGAGGCCCCCCACCCAAAAGCCGCTGGGCCGCTGCTTCCAGGACACATCGCCCAAGCAGCCTgtaagtgaagccacaattccaaaagaacagtcattctatttaagggtcac Alignment from Exonerate_protein2genome TGCAGGCTCCGCCCCCCGTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTG-CACCGCATCGAGGGGCCGAACGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCGCATCCCAAGCCCCAGCACCCGAGGCCACCCACCCAAAAGCCACTGGGCCGCTGCTTCCAGGACACATTGCCCAAGCAGCCT caccataaccctgcagggggaggctgagtcgctctctatttttcaatcagTGCAGGCTCCGCCCTCCCTGGTGAATGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCCACCGCATTGAAGGGCCAAATGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCACATCCCAAGCCCCAGCACCCGAGGCCCCCCACCCAAAAGCCGCTGGGCCGCTGCTTCCAGGACACATCGCCCAAGCAGCCTgtaagtgaagccacaattccaaaagaacagtcattctatttaagggtcac Alignment from Exonerate_coding2genome TGCAGGCTCCGCCCCCCGTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTG-CACCGCATCGAGGGGCCGAACGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCGCATCCCAAGCCCCAGCACCCGAGGCCACCCACCCAAAAGCCACTGGGCCGCTGCTTCCAGGACACATTGCCCAAGCAGCCT caccataaccctgcagggggaggctgagtcgctctctatttttcaatcagTGCAGGCTCCGCCCTCCCTGGTGAATGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCCACCGCATTGAAGGGCCAAATGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCACATCCCAAGCCCCAGCACCCGAGGCCCCCCACCCAAAAGCCGCTGGGCCGCTGCTTCCAGGACACATCGCCCAAGCAGCCTgtaagtgaagccacaattccaaaagaacagtcattctatttaagggtcac Alignment from GeneWise TGCAGGCTCCGCCCCCCGTGGTGAACGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAG-GTGCACCGCATCGAGGGGCCGAACGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCGCATCCCAAGCCCCAGCACCCGAGGCCACCCACCCAAAAGCCACTGGGCCGCTGCTTCCAGGACACATTGCCCAAGCAGCCT caccataaccctgcagggggaggctgagtcgctctctatttttcaatcagTGCAGGCTCCGCCCTCCCTGGTGAATGTGCGTGTCCATCACCCTCCTGAAGCTTCCGTTCAGGTGCCACCGCATTGAAGGGCCAAATGCTGAAGGCCCAGCCTCTTCCCAGCACTTGCTGCCACATCCCAAGCCCCAGCACCCGAGGCCCCCCACCCAAAAGCCGCTGGGCCGCTGCTTCCAGGACACATCGCCCAAGCAGCCTgtaagtgaagccacaattccaaaagaacagtcattctatttaagggtcac #### Ltbp3_ID1253_5 --> 2 - 1 Original Alignment atACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCT-GACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGg ccagtgtttccccctcttttgttgctattctttaacttttctgtttttagatACAGGAGTTCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTCGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGggtaagtttacctggagattctgtggactatagggtgggctggaggtcatg Alignment from CESAR atACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCT-GACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGg ccagtgtttccccctcttttgttgctattctttaacttttctgtttttagatACAGGAGTTCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTCGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGggtaagtttacctggagattctgtggactatagggtgggctggaggtcatg Alignment from Spaln_aa2Genome ATACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCT-GACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGG ccagtgtttccccctcttttgttgctattctttaacttttctgtttttagATACAGGAGTTCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTcGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGGgtaagtttacctggagattctgtggactatagggtgggctggaggtcatg Alignment from Spaln_nt2Genome ATACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCT-GACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGG ccagtgtttccccctcttttgttgctattctttaacttttctgtttttagATACAGGAGTTCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTCGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGGgtaagtttacctggagattctgtggactatagggtgggctggaggtcatg Alignment from Pairagon ATACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCT-GACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGG ccagtgtttccccctcttttgttgctattctttaacttttctgtttttagATACAGGAGTTCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTCGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGGgtaagtttacctggagattctgtggactatagggtgggctggaggtcatg Alignment from Exonerate_protein2genome ATACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCT-GACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGG ccagtgtttccccctcttttgttgctattctttaacttttctgtttttagATACAGGAGTTCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTCGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGGgtaagtttacctggagattctgtggactatagggtgggctggaggtcatg Alignment from Exonerate_coding2genome ATACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCT-GACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGG ccagtgtttccccctcttttgttgctattctttaacttttctgtttttagATACAGGAGTTCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTCGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGGgtaagtttacctggagattctgtggactatagggtgggctggaggtcatg Alignment from GeneWise ATACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGT-GCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGG ccagtgtttccccctcttttgttgctattctttaacttttctgtttttagATACAGGAGTTCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGTGCTCGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGGgtaagtttacctggagattctgtggactatagggtgggctggaggtcatg #### Ltbp3_ID1261_13 --> 2 - 1 Original Alignment atGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGA-GGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGg cagggggtcacaactcacctatgatgtctctgatttgtcactatctgtagatGTGAACGAGTGTGAGGCAGAGCCCTGTGGCCCTGGGAAAGGTATCTGTATGAACACTGGTGGCTCTTACAATTGTCACTGCAACCGACGGCTACCGCCTCCATGTGGGTGCAGGGGGCCGCTCATGCGTGggtgagtacaagcagctcctggctaacccacgtatactgggtgtggcctgc Alignment from CESAR atGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGA-GGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGg cagggggtcacaactcacctatgatgtctctgatttgtcactatctgtagatGTGAACGAGTGTGAGGCAGAGCCCTGTGGCCCTGGGAAAGGTATCTGTATGAACACTGGTGGCTCTTACAATTGTCACTGCAACCGACGGCTACCGCCTCCATGTGGGTGCAGGGGGCCGCTCATGCGTGggtgagtacaagcagctcctggctaacccacgtatactgggtgtggcctgc Alignment from Spaln_aa2Genome ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGA-GGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG cagggggtcacaactcacctatgatgtctctgatttgtcactatctgtagATGTGAACGAGTGTGAGGCAGAGCCCTGTGGCCCTGGGAAAGGTATCTGTATGAACACTGGTGGCTCTTACAATTGTCACTGCAACCGAcGGCTACCGCCTCCATGTGGGTGCAGGGGGCCGCTCATGCGTGGgtgagtacaagcagctcctggctaacccacgtatactgggtgtggcctgc Alignment from Spaln_nt2Genome ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGA-GGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG cagggggtcacaactcacctatgatgtctctgatttgtcactatctgtagATGTGAACGAGTGTGAGGCAGAGCCCTGTGGCCCTGGGAAAGGTATCTGTATGAACACTGGTGGCTCTTACAATTGTCACTGCAACCGACGGCTACCGCCTCCATGTGGGTGCAGGGGGCCGCTCATGCGTGGgtgagtacaagcagctcctggctaacccacgtatactgggtgtggcctgc Alignment from Pairagon ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGA-GGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG cagggggtcacaactcacctatgatgtctctgatttgtcactatctgtagATGTGAACGAGTGTGAGGCAGAGCCCTGTGGCCCTGGGAAAGGTATCTGTATGAACACTGGTGGCTCTTACAATTGTCACTGCAACCGACGGCTACCGCCTCCATGTGGGTGCAGGGGGCCGCTCATGCGTGGgtgagtacaagcagctcctggctaacccacgtatactgggtgtggcctgc Alignment from Exonerate_protein2genome ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGA-GGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG cagggggtcacaactcacctatgatgtctctgatttgtcactatctgtagATGTGAACGAGTGTGAGGCAGAGCCCTGTGGCCCTGGGAAAGGTATCTGTATGAACACTGGTGGCTCTTACAATTGTCACTGCAACCGACGGCTACCGCCTCCATGTGGGTGCAGGGGGCCGCTCATGCGTGGgtgagtacaagcagctcctggctaacccacgtatactgggtgtggcctgc Alignment from Exonerate_coding2genome ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGA-GGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG cagggggtcacaactcacctatgatgtctctgatttgtcactatctgtagATGTGAACGAGTGTGAGGCAGAGCCCTGTGGCCCTGGGAAAGGTATCTGTATGAACACTGGTGGCTCTTACAATTGTCACTGCAACCGACGGCTACCGCCTCCATGTGGGTGCAGGGGGCCGCTCATGCGTGGgtgagtacaagcagctcctggctaacccacgtatactgggtgtggcctgc Alignment from GeneWise ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAAC-CGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG cagggggtcacaactcacctatgatgtctctgatttgtcactatctgtagATGTGAACGAGTGTGAGGCAGAGCCCTGTGGCCCTGGGAAAGGTATCTGTATGAACACTGGTGGCTCTTACAATTGTCACTGCAACCGACGGCTACCGCCTCCATGTGGGTGCAGGGGGCCGCTCATGCGTGGgtgagtacaagcagctcctggctaacccacgtatactgggtgtggcctgc #### Ltbp3_ID1269_21 --> 2 - 1 Original Alignment ccGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTG-AACTATGGCATTCCTGCCCACCGTg tgtggtgagtacatacttaatcctgctgactggggcttctgatctttcagccGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGCAACTATGGCATTCCTGCCCACCGTggtaggttacaacctaccgcctccttgcttctttctctgacagtttggttt Alignment from CESAR ccGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTG-AACTATGGCATTCCTGCCCACCGTg tgtggtgagtacatacttaatcctgctgactggggcttctgatctttcagccGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGCAACTATGGCATTCCTGCCCACCGTggtaggttacaacctaccgcctccttgcttctttctctgacagtttggttt Alignment from Spaln_aa2Genome CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTG-AACTATGGCATTCCTGCCCACCGTG tgtggtgagtacatacttaatcctgctgactggggcttctgatctttcagCCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGcAACTATGGCATTCCTGCCCACCGTGgtaggttacaacctaccgcctccttgcttctttctctgacagtttggttt Alignment from Spaln_nt2Genome CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTG-AACTATGGCATTCCTGCCCACCGTG tgtggtgagtacatacttaatcctgctgactggggcttctgatctttcagCCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGCAACTATGGCATTCCTGCCCACCGTGgtaggttacaacctaccgcctccttgcttctttctctgacagtttggttt Alignment from Pairagon CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTG-AACTATGGCATTCCTGCCCACCGTG tgtggtgagtacatacttaatcctgctgactggggcttctgatctttcagCCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGCAACTATGGCATTCCTGCCCACCGTGgtaggttacaacctaccgcctccttgcttctttctctgacagtttggttt Alignment from Exonerate_protein2genome CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTG-AACTATGGCATTCCTGCCCACCGTG tgtggtgagtacatacttaatcctgctgactggggcttctgatctttcagCCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGCAACTATGGCATTCCTGCCCACCGTGgtaggttacaacctaccgcctccttgcttctttctctgacagtttggttt Alignment from Exonerate_coding2genome CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTG-AACTATGGCATTCCTGCCCACCGTG tgtggtgagtacatacttaatcctgctgactggggcttctgatctttcagCCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGCAACTATGGCATTCCTGCCCACCGTGgtaggttacaacctaccgcctccttgcttctttctctgacagtttggttt Alignment from GeneWise CCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATT-GTGAACTATGGCATTCCTGCCCACCGTG tgtggtgagtacatacttaatcctgctgactggggcttctgatctttcagCCGAATTTCACAGCCTGTGTCCTGATGGGAAAGGCTACACTCAGGACAACAACATTGTGCAACTATGGCATTCCTGCCCACCGTGgtaggttacaacctaccgcctccttgcttctttctctgacagtttggttt #### Macrod1_ID2051_6 --> 2 - 0 Original Alignment atGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTG-CTGGAGCACCGGCTGCGCTCAGTG caagagagaatgattgaaagattgaaactcacagcactctcacccttcagatGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCCACTGCCAGCCAGGCAGCTGAGCTCCACAGCTGCTACTTGAGCAGCCTGGATCTGCTGCCTGGAGCACCGGCTACGCTCAGTGgtaagagtcaattggcagcagggtcagggtcagggtcatatgtgctcccc Alignment from CESAR atGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTG-CTGGAGCACCGGCTGCGCTCAGTG caagagagaatgattgaaagattgaaactcacagcactctcacccttcagatGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCCACTGCCAGCCAGGCAGCTGAGCTCCACAGCTGCTACTTGAGCAGCCTGGATCTGCTGCCTGGAGCACCGGCTACGCTCAGTGgtaagagtcaattggcagcagggtcagggtcagggtcatatgtttattgc Alignment from Spaln_aa2Genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTG-CTGGAGCACCGGCTGCGCTCAGTG caagagagaatgattgaaagattgaaactcacagcactctcacccttcagATGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCCACTGCCAGCCAGGCAGCTGAGCTCCACAGCTGCTACTTGAGCAGCCTGGATCTGCTGcCTGGAGCACCGGCTACGCTCAGTGgtaagagtcaattggcagcagggtcagggtcagggtcatatgtgctcccc Alignment from Spaln_nt2Genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGC-TGGAGCACCGGCTGCGCTCAGTG caagagagaatgattgaaagattgaaactcacagcactctcacccttcagATGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCCACTGCCAGCCAGGCAGCTGAGCTCCACAGCTGCTACTTGAGCAGCCTGGATCTGCTGCCTGGAGCACCGGCTACGCTCAGTGgtaagagtcaattggcagcagggtcagggtcagggtcatatgtgctcccc Alignment from Pairagon ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTG-CTGGAGCACCGGCTGCGCTCAGTG caagagagaatgattgaaagattgaaactcacagcactctcacccttcagATGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCCACTGCCAGCCAGGCAGCTGAGCTCCACAGCTGCTACTTGAGCAGCCTGGATCTGCTGCCTGGAGCACCGGCTACGCTCAGTGgtaagagtcaattggcagcagggtcagggtcagggtcatatgtgctcccc Alignment from Exonerate_protein2genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTG-CTGGAGCACCGGCTGCGCTCAGTG caagagagaatgattgaaagattgaaactcacagcactctcacccttcagATGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCCACTGCCAGCCAGGCAGCTGAGCTCCACAGCTGCTACTTGAGCAGCCTGGATCTGCTGCCTGGAGCACCGGCTACGCTCAGTGgtaagagtcaattggcagcagggtcagggtcagggtcatatgtgctcccc Alignment from Exonerate_coding2genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTG-CTGGAGCACCGGCTGCGCTCAGTGGCTTTCCCGTGCATCTCCACAGGCGTGT caagagagaatgattgaaagattgaaactcacagcactctcacccttcagATGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCCACTGCCAGCCAGGCAGCTGAGCTCCACAGCTGCTACTTGAGCAGCCTGGATCTGCTGCCTGGAGCACCGGCTACGCTCAGTGGTAAGAGTCAATTGGCAGCAGGGTCAGGgtcagggtcatatgtgctcccc Alignment from GeneWise ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTG-CTGGAGCACCGGCTGCGCTCAGTG caagagagaatgattgaaagattgaaactcacagcactctcacccttcagATGTCATCCACACGGTGGGGCCCATCGCTGTGGGCCAACCCACTGCCAGCCAGGCAGCTGAGCTCCACAGCTGCTACTTGAGCAGCCTGGATCTGCTGCCTGGAGCACCGGCTACGCTCAGTGgtaagagtcaattggcagcagggtcagggtcagggtcatatgtgctcccc #### Macrod1_ID2053_8 --> 2 - 0 Original Alignment gcTACCCCAATGAGGAGGCT-GCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG gggtagggtggggtggggccagatgtggttcaccgtttttctccccgcaggcTACCCCAATGAGGAGGCTCGCAGAAGTAGTGCTGGTTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAGgtgagtcctgacagaggttagcagtgagactgaagcttgggtgcctagca Alignment from CESAR gcTACCCCAATGAGGAGGCT-GCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG gggtagggtggggtggggccagatgtggttcaccgtttttctccccgcaggcTACCCCAATGAGGAGGCTCGCAGAAGTAGTGCTGGTTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAGgtgagtcctgacagaggttagcagtgagactgaagcttgggtgcctagca Alignment from Spaln_aa2Genome GCTACCCCAATGAGGAGGCT-GCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG gggtagggtggggtggggccagatgtggttcaccgtttttctccccgcagGCTACCCCAATGAGGAGGCTcGCAGAAGTAGTGCTGGTTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAGgtgagtcctgacagaggttagcagtgagactgaagcttgggtgcctagca Alignment from Spaln_nt2Genome GCTACCCCAATGAGGAGGCT-GCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG gggtagggtggggtggggccagatgtggttcaccgtttttctccccgcagGCTACCCCAATGAGGAGGCTCGCAGAAGTAGTGCTGGTTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAGgtgagtcctgacagaggttagcagtgagactgaagcttgggtgcctagca Alignment from Pairagon GCTACCCCAATGAGGAGGCT-GCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG gggtagggtggggtggggccagatgtggttcaccgtttttctccccgcagGCTACCCCAATGAGGAGGCTCGCAGAAGTAGTGCTGGTTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAGgtgagtcctgacagaggttagcagtgagactgaagcttgggtgcctagca Alignment from Exonerate_protein2genome GCTACCCCAATGAGGAGGCT-GCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG gggtagggtggggtggggccagatgtggttcaccgtttttctccccgcagGCTACCCCAATGAGGAGGCTCGCAGAAGTAGTGCTGGTTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAGgtgagtcctgacagaggttagcagtgagactgaagcttgggtgcctagca Alignment from Exonerate_coding2genome GCTACCCCAATGAGGAGGCT-GCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG gggtagggtggggtggggccagatgtggttcaccgtttttctccccgcagGCTACCCCAATGAGGAGGCTCGCAGAAGTAGTGCTGGTTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAGgtgagtcctgacagaggttagcagtgagactgaagcttgggtgcctagca Alignment from GeneWise GGAGGCTGCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG gggtagggtggggtggggccagatgtggttcaccgtttttctccccgcaggctaccccaatgagGAGGCTCGCAGAAGTAGTGCTGGTTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAGgtgagtcctgacagaggttagcagtgagactgaagcttgggtgcctagca #### Macrod1_ID2054_9 --> 0 - 1 Original Alignment GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGC-CTTCCCCATTATTTCCCAGTAg ggtaggccagtggaagcctagcctgagccccttctgcctggtgttcacagGTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGATGAGGGCATTTACCGGGAACGCCCTTCCCCATTATTTCCCAGTAggtgagcacccgttcctcctatgctctggggcatctgcgtctctctgctac Alignment from CESAR GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGC-CTTCCCCATTATTTCCCAGTAg ggtaggccagtggaagcctagcctgagccccttctgcctggtgttcacagGTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGATGAGGGCATTTACCGGGAACGCCCTTCCCCATTATTTCCCAGTAggtgagcacccgttcctcctatgctctggggcacctgtccttaagccctgc Alignment from Spaln_aa2Genome GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGC-CTTCCCCATTATTTCCCAGTAG ggtaggccagtggaagcctagcctgagccccttctgcctggtgttcacagGTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGATGAGGGCATTTACCGGGAACGCcCTTCCCCATTATTTCCCAGTAGgtgagcacccgttcctcctatgctctggggcatctgcgtctctctgctac Alignment from Spaln_nt2Genome GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCG-CCTTCCCCATTATTTCCCAGTAGCC ggtaggccagtggaagcctagcctgagccccttctgcctggtgttcacagGTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGATGAGGGCATTTACCGGGAACGCCCTTCCCCATTATTTCCCAGTAGGTgagcacccgttcctcctatgctctggggcatctgcgtctctctgctac Alignment from Pairagon GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCG-CCTTCCCCATTATTTCCCAGTAG ggtaggccagtggaagcctagcctgagccccttctgcctggtgttcacagGTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGATGAGGGCATTTACCGGGAACGCCCTTCCCCATTATTTCCCAGTAGgtgagcacccgttcctcctatgctctggggcatctgcgtctctctgctac Alignment from Exonerate_protein2genome GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGC-CTTCCCCATTATTTCCCAGTA ggtaggccagtggaagcctagcctgagccccttctgcctggtgttcacagGTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGATGAGGGCATTTACCGGGAACGCCCTTCCCCATTATTTCCCAGTAggtgagcacccgttcctcctatgctctggggcatctgcgtctctctgctac Alignment from Exonerate_coding2genome GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGC-CTTCCCCATTATTTCCCAGTA ggtaggccagtggaagcctagcctgagccccttctgcctggtgttcacagGTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGATGAGGGCATTTACCGGGAACGCCCTTCCCCATTATTTCCCAGTAggtgagcacccgttcctcctatgctctggggcatctgcgtctctctgctac Alignment from GeneWise GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAGCC ggtaggccagtggaagcctagcctgagccccttctgcctggtgttcacagGTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGATGAGGGCATTTACCGGGAACGCCCTTCCCCATTATTTCCCAGTAGGtgagcacccgttcctcctatgctctggggcatctgcgtctctctgctac #### Map3k11_ID1202_3 --> 1 - 1 Original Alignment cTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAG-TTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTg tagttcctccttgcttggaggtgaacattctcctttttcccacggccaagcTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGCTTAACGTTACCCATCCCATCTACTTGCCCTGAGCCCTTTGCACAACTCATGGCTggtacagggatggggctggggaggtgaggggcagaacttcctggacccaga Alignment from CESAR cTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAG-TTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTg tagttcctccttgcttggaggtgaacattctcctttttcccacggccaagcTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGCTTAACGTTACCCATCCCATCTACTTGCCCTGAGCCCTTTGCACAACTCATGGCTggtacagggatggggctggggaggtgaggggcagaacttcctggacccaga Alignment from Spaln_aa2Genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAG-TTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctccttgcttggaggtgaacattctcctttttcccacggccaagCTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGcTTAACGTTACCCATCCCATCTACTTGCCCTGAGCCCTTTGCACAACTCATGGCTGgtacagggatggggctggggaggtgaggggcagaacttcctggacccaga Alignment from Spaln_nt2Genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAG-TTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctccttgcttggaggtgaacattctcctttttcccacggccaagCTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGCTTAACGTTACCCATCCCATCTACTTGCCCTGAGCCCTTTGCACAACTCATGGCTGgtacagggatggggctggggaggtgaggggcagaacttcctggacccaga Alignment from Pairagon CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAG-TTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctccttgcttggaggtgaacattctcctttttcccacggccaagCTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGCTTAACGTTACCCATCCCATCTACTTGCCCTGAGCCCTTTGCACAACTCATGGCTGgtacagggatggggctggggaggtgaggggcagaacttcctggacccaga Alignment from Exonerate_protein2genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAG-TTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctccttgcttggaggtgaacattctcctttttcccacggccaagCTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGCTTAACGTTACCCATCCCATCTACTTGCCCTGAGCCCTTTGCACAACTCATGGCTGgtacagggatggggctggggaggtgaggggcagaacttcctggacccaga Alignment from Exonerate_coding2genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAG-TTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctccttgcttggaggtgaacattctcctttttcccacggccaagCTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGCTTAACGTTACCCATCCCATCTACTTGCCCTGAGCCCTTTGCACAACTCATGGCTGgtacagggatggggctggggaggtgaggggcagaacttcctggacccaga Alignment from GeneWise CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAG-TTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctccttgcttggaggtgaacattctcctttttcccacggccaagCTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGCTTAACGTTACCCATCCCATCTACTTGCCCTGAGCCCTTTGCACAACTCATGGCTGgtacagggatggggctggggaggtgaggggcagaacttcctggacccaga #### Map3k11_ID1203_4 --> 2 - 0 Original Alignment acTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATC-CTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG tcctggacccagacacaaatgctcacagggttttgatgtttctttcgcagacTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCCTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGTGAGATCGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtaatgagaatgggggacaaaaggtggggtagaggataaggtgggaggtc Alignment from CESAR acTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATC-CTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG tcctggacccagacacaaatgctcacagggttttgatgtttctttcgcagacTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCCTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGTGAGATCGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtaatgagaatgggggacaaaaggtggggtagaggataaggtgggaggtc Alignment from Spaln_aa2Genome ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATC-CTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG tcctggacccagacacaaatgctcacagggttttgatgtttctttcgcagACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCcCTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGTGAGATCGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtaatgagaatgggggacaaaaggtggggtagaggataaggtgggaggtc Alignment from Spaln_nt2Genome ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCAT-CCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG tcctggacccagacacaaatgctcacagggttttgatgtttctttcgcagACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCCTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGTGAGATCGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtaatgagaatgggggacaaaaggtggggtagaggataaggtgggaggtc Alignment from Pairagon ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCAT-CCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG tcctggacccagacacaaatgctcacagggttttgatgtttctttcgcagACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCCTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGTGAGATCGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtaatgagaatgggggacaaaaggtggggtagaggataaggtgggaggtc Alignment from Exonerate_protein2genome ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATC-CTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG tcctggacccagacacaaatgctcacagggttttgatgtttctttcgcagACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCCTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGTGAGATCGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtaatgagaatgggggacaaaaggtggggtagaggataaggtgggaggtc Alignment from Exonerate_coding2genome ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATC-CTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG tcctggacccagacacaaatgctcacagggttttgatgtttctttcgcagACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCCTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGTGAGATCGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtaatgagaatgggggacaaaaggtggggtagaggataaggtgggaggtc Alignment from GeneWise ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATC-CTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG tcctggacccagacacaaatgctcacagggttttgatgtttctttcgcagACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCCTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGTGAGATCGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtaatgagaatgggggacaaaaggtggggtagaggataaggtgggaggtc #### Map3k11_ID1206_7 --> 2 - 2 Original Alignment tgGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAA-GATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGag gtaaggatgtaagataaggatggactccaccctgtaatgttttattccagtgGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCGGACGTCTTGAACGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAAAACGGGaggtaagtgcttcagcaccctaaaaccctggtgttctactctttggggccct Alignment from CESAR tgGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAA-GATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGag gtaaggatgtaagataaggatggactccaccctgtaatgttttattccagtgGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCGGACGTCTTGAACGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAAAACGGGaggtaagtgcttcagcaccctaaaaccctggtgttctactctttggggccct Alignment from Spaln_aa2Genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAA-GATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG gtaaggatgtaagataaggatggactccaccctgtaatgttttattccagTGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCGGACGTCTTGAAcGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAAAACGGGAGgtaagtgcttcagcaccctaaaaccctggtgttctactctttggggccct Alignment from Spaln_nt2Genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAA-GATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG gtaaggatgtaagataaggatggactccaccctgtaatgttttattccagTGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCGGACGTCTTGAACGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAAAACGGGAGgtaagtgcttcagcaccctaaaaccctggtgttctactctttggggccct Alignment from Pairagon TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAA-GATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG gtaaggatgtaagataaggatggactccaccctgtaatgttttattccagTGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCGGACGTCTTGAACGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAAAACGGGAGgtaagtgcttcagcaccctaaaaccctggtgttctactctttggggccct Alignment from Exonerate_protein2genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAA-GATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG gtaaggatgtaagataaggatggactccaccctgtaatgttttattccagTGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCGGACGTCTTGAACGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAAAACGGGAGgtaagtgcttcagcaccctaaaaccctggtgttctactctttggggccct Alignment from Exonerate_coding2genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAA-GATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG gtaaggatgtaagataaggatggactccaccctgtaatgttttattccagTGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCGGACGTCTTGAACGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAAAACGGGAGgtaagtgcttcagcaccctaaaaccctggtgttctactctttggggccct Alignment from GeneWise TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTT-GAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG gtaaggatgtaagataaggatggactccaccctgtaatgttttattccagTGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCGGACGTCTTGAACGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAAAACGGGAGgtaagtgcttcagcaccctaaaaccctggtgttctactctttggggccct #### Map4k2_ID1623_3 --> 2 - 2 Original Alignment ggGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGC-CACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCag ggcactgaagtctaggcgccccccccctatgtatttttgtccttttcaagggGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCaggtacagctgtttatcctcttaccctcttgtgcccattgtgccatgtttgc Alignment from CESAR ggGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGC-CACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCag ggcactgaagtctaggcgccccccccctatgtatttttgtccttttcaagggGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCaggtacagctgtttatcctcttaccctcttgtgcccattgtgccaaccgcgt Alignment from Spaln_aa2Genome GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCC-AATGTCGTGGCCTACATCGGCAGCTACCTCAG ggcactgaagtctaggcgccccccccctatgtatttttgtccttttcaagGGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCCACCCcAATGTCGTGGCCTACATCGGCAGCTACCTCAGgtacagctgtttatcctcttaccctcttgtgcccattgtgccatgtttgc Alignment from Spaln_nt2Genome GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCG-CCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG ggcactgaagtctaggcgccccccccctatgtatttttgtccttttcaagGGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAGgtacagctgtttatcctcttaccctcttgtgcccattgtgccatgtttgc Alignment from Pairagon GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCG-CCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG ggcactgaagtctaggcgccccccccctatgtatttttgtccttttcaagGGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAGgtacagctgtttatcctcttaccctcttgtgcccattgtgccatgtttgc Alignment from Exonerate_protein2genome GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGC-CACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG ggcactgaagtctaggcgccccccccctatgtatttttgtccttttcaagGGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAGgtacagctgtttatcctcttaccctcttgtgcccattgtgccatgtttgc Alignment from Exonerate_coding2genome GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGC-CACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG ggcactgaagtctaggcgccccccccctatgtatttttgtccttttcaagGGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAGgtacagctgtttatcctcttaccctcttgtgcccattgtgccatgtttgc Alignment from GeneWise GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGC-CGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG ggcactgaagtctaggcgccccccccctatgtatttttgtccttttcaagGGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAGgtacagctgtttatcctcttaccctcttgtgcccattgtgccatgtttgc #### Map4k2_ID1625_5 --> 2 - 0 Original Alignment ccACTGGGCCCCTGGAAGAACGGCAGATT-GCCTATGTTTGCCGGGAGGCACTGAAG aggatatccctcagggtctttctcttcatataatgttccttcttttctagccACTGGGCCCCTGGAAGAACGGCAGATTCGCCTATGTTTGCCGGGAGGCACTGAAGgtaagggactcacaggcagcacccattttggaatcctcagaaatgtgggc Alignment from CESAR ccACTGGGCCCCTGGAAGAACGGCAGATT-GCCTATGTTTGCCGGGAGGCACTGAAG aggatatccctcagggtctttctcttcatataatgttccttcttttctagccACTGGGCCCCTGGAAGAACGGCAGATTCGCCTATGTTTGCCGGGAGGCACTGAAGgtaagggactcacaggcagcacccattttggaatcctcagaaatgtgggc Alignment from Spaln_aa2Genome CCACTGGGCCCCTGGAAGAACGGCAGATT-GCCTATGTTTGCCGGGAGGCACTGAAG aggatatccctcagggtctttctcttcatataatgttccttcttttctagCCACTGGGCCCCTGGAAGAACGGCAGATTcGCCTATGTTTGCCGGGAGGCACTGAAGgtaagggactcacaggcagcacccattttggaatcctcagaaatgtgggc Alignment from Spaln_nt2Genome CCACTGGGCCCCTGGAAGAACGGCAGATT-GCCTATGTTTGCCGGGAGGCACTGAAG aggatatccctcagggtctttctcttcatataatgttccttcttttctagCCACTGGGCCCCTGGAAGAACGGCAGATTCGCCTATGTTTGCCGGGAGGCACTGAAGgtaagggactcacaggcagcacccattttggaatcctcagaaatgtgggc Alignment from Pairagon CCACTGGGCCCCTGGAAGAACGGCAGATT-GCCTATGTTTGCCGGGAGGCACTGAAG aggatatccctcagggtctttctcttcatataatgttccttcttttctagCCACTGGGCCCCTGGAAGAACGGCAGATTCGCCTATGTTTGCCGGGAGGCACTGAAGgtaagggactcacaggcagcacccattttggaatcctcagaaatgtgggc Alignment from Exonerate_protein2genome CCACTGGGCCCCTGGAAGAACGGCAGATT-GCCTATGTTTGCCGGGAGGCACTGAAG aggatatccctcagggtctttctcttcatataatgttccttcttttctagCCACTGGGCCCCTGGAAGAACGGCAGATTCGCCTATGTTTGCCGGGAGGCACTGAAGgtaagggactcacaggcagcacccattttggaatcctcagaaatgtgggc Alignment from Exonerate_coding2genome CCACTGGGCCCCTGGAAGAACGGCAGATT-GCCTATGTTTGCCGGGAGGCACTGAAG aggatatccctcagggtctttctcttcatataatgttccttcttttctagCCACTGGGCCCCTGGAAGAACGGCAGATTCGCCTATGTTTGCCGGGAGGCACTGAAGgtaagggactcacaggcagcacccattttggaatcctcagaaatgtgggc Alignment from GeneWise CCACTGGGCCCCTGGAAGAACGGCAGATT-GCCTATGTTTGCCGGGAGGCACTGAAG aggatatccctcagggtctttctcttcatataatgttccttcttttctagCCACTGGGCCCCTGGAAGAACGGCAGATTCGCCTATGTTTGCCGGGAGGCACTGAAGgtaagggactcacaggcagcacccattttggaatcctcagaaatgtgggc #### Map4k2_ID1628_7 --> 0 - 1 Original Alignment GGTGCCAACCTTCTGCTCACTCTGCAG-GGTGATGTCAAGCTGg ggaagccgacaggcacctagcacaattcactttcagtgtttctctcacagGGTGCCAACCTTCTGCTCACTCTGCAGCGGTGATGTCAAGCTGggtgagtagctggaggacattctgggaccacacaactgagtgctggagctc Alignment from CESAR GGTGCCAACCTTCTGCTCACTCTGCAG-GGTGATGTCAAGCTGg ggaagccgacaggcacctagcacaattcactttcagtgtttctctcacagGGTGCCAACCTTCTGCTCACTCTGCAGCGGTGATGTCAAGCTGggtgagtagctggaggacattctgggaccacacaactgagtgctggagctc Alignment from Spaln_aa2Genome GGTGCCAACCTTCTGCTCACTCTGCAG-GGTGATGTCAAGCTGG ggaagccgacaggcacctagcacaattcactttcagtgtttctctcacagGGTGCCAACCTTCTGCTCACTCTGCAGcGGTGATGTCAAGCTGGgtgagtagctggaggacattctgggaccacacaactgagtgctggagctc Alignment from Spaln_nt2Genome GGTGCCAACCTTCTGCTCACTCTGCAG-GGTGATGTCAAGCTGG ggaagccgacaggcacctagcacaattcactttcagtgtttctctcacagGGTGCCAACCTTCTGCTCACTCTGCAGCGGTGATGTCAAGCTGGgtgagtagctggaggacattctgggaccacacaactgagtgctggagctc Alignment from Pairagon GGTGCCAACCTTCTGCTCACTCTGCAG-GGTGATGTCAAGCTGG ggaagccgacaggcacctagcacaattcactttcagtgtttctctcacagGGTGCCAACCTTCTGCTCACTCTGCAGCGGTGATGTCAAGCTGGgtgagtagctggaggacattctgggaccacacaactgagtgctggagctc Alignment from Exonerate_protein2genome GGTGCCAACCTTCTGCTCACTCTGCAG-GGTGATGTCAAGCTGG ggaagccgacaggcacctagcacaattcactttcagtgtttctctcacagGGTGCCAACCTTCTGCTCACTCTGCAGCGGTGATGTCAAGCTGGgtgagtagctggaggacattctgggaccacacaactgagtgctggagctc Alignment from Exonerate_coding2genome GGTGCCAACCTTCTGCTCACTCTGCAG-GGTGATGTCAAGCTGG ggaagccgacaggcacctagcacaattcactttcagtgtttctctcacagGGTGCCAACCTTCTGCTCACTCTGCAGCGGTGATGTCAAGCTGGgtgagtagctggaggacattctgggaccacacaactgagtgctggagctc Alignment from GeneWise GGTGCCAACCTTCTGCTCACTCTG-CAGGGTGATGTCAAGCTGG ggaagccgacaggcacctagcacaattcactttcagtgtttctctcacagGGTGCCAACCTTCTGCTCACTCTGCAGCGGTGATGTCAAGCTGGgtgagtagctggaggacattctgggaccacacaactgagtgctggagctc #### Map4k2_ID1629_8 --> 2 - 2 Original Alignment cgGACTTTGGGGTGTCAGGCGAGCTG-ACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACtg gggtgggaagtaaatgtggccctgggtctaatgttcatcttcttccttagcaGACTTTGGGGTGTCAGGCGAGCTGCACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACtggtaagttggtgccctggcaatgggtggagggcacaaggagaggacacctg Alignment from CESAR cgGACTTTGGGGTGTCAGGCGAGCTG-ACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACtg gggtgggaagtaaatgtggccctgggtctaatgttcatcttcttccttagcaGACTTTGGGGTGTCAGGCGAGCTGCACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACtggtaagttggtgccctggcaatgggtggagggcacaaggagaggacacctg Alignment from Spaln_aa2Genome CGGACTTTGGGGTGTCAGGCGAGCTG-ACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gggtgggaagtaaatgtggccctgggtctaatgttcatcttcttccttagCAGACTTTGGGGTGTCAGGCGAGCTGcACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTGgtaagttggtgccctggcaatgggtggagggcacaaggagaggacacctg Alignment from Spaln_nt2Genome CGGACTTTGGGGTGTCAGGCGAGCTG-ACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gggtgggaagtaaatgtggccctgggtctaatgttcatcttcttccttagCAGACTTTGGGGTGTCAGGCGAGCTGCACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTGgtaagttggtgccctggcaatgggtggagggcacaaggagaggacacctg Alignment from Pairagon CGGACTTTGGGGTGTCAGGCGAGCTG-ACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gggtgggaagtaaatgtggccctgggtctaatgttcatcttcttccttagCAGACTTTGGGGTGTCAGGCGAGCTGCACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTGgtaagttggtgccctggcaatgggtggagggcacaaggagaggacacctg Alignment from Exonerate_protein2genome CGGACTTTGGGGTGTCAGGCGAGCTG-ACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gggtgggaagtaaatgtggccctgggtctaatgttcatcttcttccttagCAGACTTTGGGGTGTCAGGCGAGCTGCACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTGgtaagttggtgccctggcaatgggtggagggcacaaggagaggacacctg Alignment from Exonerate_coding2genome CGGACTTTGGGGTGTCAGGCGAGCTG-ACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gggtgggaagtaaatgtggccctgggtctaatgttcatcttcttccttagCAGACTTTGGGGTGTCAGGCGAGCTGCACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTGgtaagttggtgccctggcaatgggtggagggcacaaggagaggacacctg Alignment from GeneWise CGGACTTTGGGGTGTCAGGCGAG-CTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gggtgggaagtaaatgtggccctgggtctaatgttcatcttcttccttagCAGACTTTGGGGTGTCAGGCGAGCTGCACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTGgtaagttggtgccctggcaatgggtggagggcacaaggagaggacacctg #### Map4k2_ID1630_9 --> 1 - 2 Original Alignment gATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTC-CACCTGCACCCCATGag gggcacaaggagaggacacctggccatctctactccttgttctgttgcaggATGGCCCCAGAGGTTGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTGTGCGATGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGAGCGAGCTGCAACCTCCACTGTTCCCACCTGCACCCCATGaggtatggctagcacttgccctttacctgctccttgcttgccctgctgatct Alignment from CESAR gATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTC-CACCTGCACCCCATGag gggcacaaggagaggacacctggccatctctactccttgttctgttgcaggATGGCCCCAGAGGTTGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTGTGCGATGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGAGCGAGCTGCAACCTCCACTGTTCCCACCTGCACCCCATGaggtatggctagcacttgccctttacctgctccttgcttgccctgctgatct Alignment from Spaln_aa2Genome GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTC-CACCTGCACCCCATGAG gggcacaaggagaggacacctggccatctctactccttgttctgttgcagGATGGCCCCAGAGGTTGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTGTGCGATGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGAGCGAGCTGCAACCTCCACTGTTCcCACCTGCACCCCATGAGgtatggctagcacttgccctttacctgctccttgcttgccctgctgatct Alignment from Spaln_nt2Genome GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTC-CACCTGCACCCCATGAG gggcacaaggagaggacacctggccatctctactccttgttctgttgcagGATGGCCCCAGAGGTTGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTGTGCGATGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGAGCGAGCTGCAACCTCCACTGTTCCCACCTGCACCCCATGAGgtatggctagcacttgccctttacctgctccttgcttgccctgctgatct Alignment from Pairagon GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTT-CCACCTGCACCCCATGAG gggcacaaggagaggacacctggccatctctactccttgttctgttgcagGATGGCCCCAGAGGTTGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTGTGCGATGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGAGCGAGCTGCAACCTCCACTGTTCCCACCTGCACCCCATGAGgtatggctagcacttgccctttacctgctccttgcttgccctgctgatct Alignment from Exonerate_protein2genome GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTC-CACCTGCACCCCATGAG gggcacaaggagaggacacctggccatctctactccttgttctgttgcagGATGGCCCCAGAGGTTGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTGTGCGATGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGAGCGAGCTGCAACCTCCACTGTTCCCACCTGCACCCCATGAGgtatggctagcacttgccctttacctgctccttgcttgccctgctgatct Alignment from Exonerate_coding2genome GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTC-CACCTGCACCCCATGAG gggcacaaggagaggacacctggccatctctactccttgttctgttgcagGATGGCCCCAGAGGTTGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTGTGCGATGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGAGCGAGCTGCAACCTCCACTGTTCCCACCTGCACCCCATGAGgtatggctagcacttgccctttacctgctccttgcttgccctgctgatct Alignment from GeneWise GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTG-TTCCACCTGCACCCCATGAG gggcacaaggagaggacacctggccatctctactccttgttctgttgcagGATGGCCCCAGAGGTTGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTGTGCGATGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGAGCGAGCTGCAACCTCCACTGTTCCCACCTGCACCCCATGAGgtatggctagcacttgccctttacctgctccttgcttgccctgctgatct #### Map4k2_ID1631_10 --> 1 - 2 Original Alignment gGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAG-CTAAGAGATAAGACGCGTtg tccttgcttgccctgctgatctttgacctatttttcaatctttgactaaggGCCTTGATGCTCATGTCGAAGAGCAGCTTCCAGCCACCTAAGCCTAAGAGATAAGACACGTtggtatgccctcacccacagctgagataccctttttccagcctagtcccgta Alignment from CESAR gGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAG-CTAAGAGATAAGACGCGTtg tccttgcttgccctgctgatctttgacctatttttcaatctttgactaaggGCCTTGATGCTCATGTCGAAGAGCAGCTTCCAGCCACCTAAGCCTAAGAGATAAGACACGTtggtatgccctcacccacagctgagataccctttttccagcctagtcccgta Alignment from Spaln_aa2Genome GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAG-CTAAGAGATAAGACGCGTTG tccttgcttgccctgctgatctttgacctatttttcaatctttgactaagGGCCTTGATGCTCATGTCGAAGAGCAGCTTCCAGCCACCTAAGcCTAAGAGATAAGACACGTTGgtatgccctcacccacagctgagataccctttttccagcctagtcccgta Alignment from Spaln_nt2Genome GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAGC-TAAGAGATAAGACGCGTTG tccttgcttgccctgctgatctttgacctatttttcaatctttgactaagGGCCTTGATGCTCATGTCGAAGAGCAGCTTCCAGCCACCTAAGCCTAAGAGATAAGACACGTTGgtatgccctcacccacagctgagataccctttttccagcctagtcccgta Alignment from Pairagon GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAG-CTAAGAGATAAGACGCGTTG tccttgcttgccctgctgatctttgacctatttttcaatctttgactaagGGCCTTGATGCTCATGTCGAAGAGCAGCTTCCAGCCACCTAAGCCTAAGAGATAAGACACGTTGgtatgccctcacccacagctgagataccctttttccagcctagtcccgta Alignment from Exonerate_protein2genome GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAG-CTAAGAGATAAGACGCGTTG tccttgcttgccctgctgatctttgacctatttttcaatctttgactaagGGCCTTGATGCTCATGTCGAAGAGCAGCTTCCAGCCACCTAAGCCTAAGAGATAAGACACGTTGgtatgccctcacccacagctgagataccctttttccagcctagtcccgta Alignment from Exonerate_coding2genome GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAG-CTAAGAGATAAGACGCGTTG tccttgcttgccctgctgatctttgacctatttttcaatctttgactaagGGCCTTGATGCTCATGTCGAAGAGCAGCTTCCAGCCACCTAAGCCTAAGAGATAAGACACGTTGgtatgccctcacccacagctgagataccctttttccagcctagtcccgta Alignment from GeneWise GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCCAAG-CTAAGAGATAAGACGCGTTG tccttgcttgccctgctgatctttgacctatttttcaatctttgactaagGGCCTTGATGCTCATGTCGAAGAGCAGCTTCCAGCCACCTAAGCCTAAGAGATAAGACACGTTGgtatgccctcacccacagctgagataccctttttccagcctagtcccgta #### Map4k2_ID1632_11 --> 1 - 0 Original Alignment gACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAG-AAGAGGCCTACAGCAGAGAGGCTTCTGCAG cctaatttggatttgggtgggtgggtgggtctttgtcctttctgtttcaggACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGCAAGAGGCCTACAGCAGAGAGGCTTCTGCAGgtgagcggcaggggataactggtgacttgagcctcaaagacatggcctgg Alignment from CESAR gACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAG-AAGAGGCCTACAGCAGAGAGGCTTCTGCAG cctaatttggatttgggtgggtgggtgggtctttgtcctttctgtttcaggACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGCAAGAGGCCTACAGCAGAGAGGCTTCTGCAGgtgagcggcaggggataactggtgacttgagcctcaaagacatggcctgg Alignment from Spaln_aa2Genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAG-AAGAGGCCTACAGCAGAGAGGCTTCTGCAG cctaatttggatttgggtgggtgggtgggtctttgtcctttctgtttcagGACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGcAAGAGGCCTACAGCAGAGAGGCTTCTGCAGgtgagcggcaggggataactggtgacttgagcctcaaagacatggcctgg Alignment from Spaln_nt2Genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAG-AAGAGGCCTACAGCAGAGAGGCTTCTGCAG cctaatttggatttgggtgggtgggtgggtctttgtcctttctgtttcagGACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGCAAGAGGCCTACAGCAGAGAGGCTTCTGCAGgtgagcggcaggggataactggtgacttgagcctcaaagacatggcctgg Alignment from Pairagon GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAG-AAGAGGCCTACAGCAGAGAGGCTTCTGCAG cctaatttggatttgggtgggtgggtgggtctttgtcctttctgtttcagGACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGCAAGAGGCCTACAGCAGAGAGGCTTCTGCAGgtgagcggcaggggataactggtgacttgagcctcaaagacatggcctgg Alignment from Exonerate_protein2genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAG-AAGAGGCCTACAGCAGAGAGGCTTCTGCAG cctaatttggatttgggtgggtgggtgggtctttgtcctttctgtttcagGACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGCAAGAGGCCTACAGCAGAGAGGCTTCTGCAGgtgagcggcaggggataactggtgacttgagcctcaaagacatggcctgg Alignment from Exonerate_coding2genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAG-AAGAGGCCTACAGCAGAGAGGCTTCTGCAG cctaatttggatttgggtgggtgggtgggtctttgtcctttctgtttcagGACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGCAAGAGGCCTACAGCAGAGAGGCTTCTGCAGgtgagcggcaggggataactggtgacttgagcctcaaagacatggcctgg Alignment from GeneWise GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCC-AAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cctaatttggatttgggtgggtgggtgggtctttgtcctttctgtttcagGACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGCAAGAGGCCTACAGCAGAGAGGCTTCTGCAGgtgagcggcaggggataactggtgacttgagcctcaaagacatggcctgg #### Map4k2_ID1633_12 --> 0 - 0 Original Alignment CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCC-CCTGAAGACAGTGAGCTGGAG gacatggcctggaggacagggagcaactccctgctcccttatctgcatagCATCCATTCACAACCCAGCATCTCCCTCCAGCCCTCCTCACCCAGCTCCTCGACAAGGCTAGTGACCCCCATCTAGGAACCCTCTCCCCCTGAAGACAGTGAGCTGGAGgtgagcgggggctgggagccaggtcagctcggcttggtgggaaggtggta Alignment from CESAR CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCC-CCTGAAGACAGTGAGCTGGAG gacatggcctggaggacagggagcaactccctgctcccttatctgcatagCATCCATTCACAACCCAGCATCTCCCTCCAGCCCTCCTCACCCAGCTCCTCGACAAGGCTAGTGACCCCCATCTAGGAACCCTCTCCCCCTGAAGACAGTGAGCTGGAGgtgagcgggggctgggagccaggtcagctcggcttggtgggaaggtggta Alignment from Spaln_aa2Genome CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCC-CCTGAAGACAGTGAGCTGGAG gacatggcctggaggacagggagcaactccctgctcccttatctgcatagCATCCATTCACAACCCAGCATCTCCCTCCAGCCCTCCTCACCCAGCTCCTCGACAAGGCTAGTGACCCCCATCTAGGAACCCTCTCCcCCTGAAGACAGTGAGCTGGAGgtgagcgggggctgggagccaggtcagctcggcttggtgggaaggtggta Alignment from Spaln_nt2Genome CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCCC-CTGAAGACAGTGAGCTGGAG gacatggcctggaggacagggagcaactccctgctcccttatctgcatagCATCCATTCACAACCCAGCATCTCCCTCCAGCCCTCCTCACCCAGCTCCTCGACAAGGCTAGTGACCCCCATCTAGGAACCCTCTCCCCCTGAAGACAGTGAGCTGGAGgtgagcgggggctgggagccaggtcagctcggcttggtgggaaggtggta Alignment from Pairagon CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCT-CCCCTGAAGACAGTGAGCTGGAG gacatggcctggaggacagggagcaactccctgctcccttatctgcatagCATCCATTCACAACCCAGCATCTCCCTCCAGCCCTCCTCACCCAGCTCCTCGACAAGGCTAGTGACCCCCATCTAGGAACCCTCTCCCCCTGAAGACAGTGAGCTGGAGgtgagcgggggctgggagccaggtcagctcggcttggtgggaaggtggta Alignment from Exonerate_protein2genome CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCC-CCTGAAGACAGTGAGCTGGAG gacatggcctggaggacagggagcaactccctgctcccttatctgcatagCATCCATTCACAACCCAGCATCTCCCTCCAGCCCTCCTCACCCAGCTCCTCGACAAGGCTAGTGACCCCCATCTAGGAACCCTCTCCCCCTGAAGACAGTGAGCTGGAGgtgagcgggggctgggagccaggtcagctcggcttggtgggaaggtggta Alignment from Exonerate_coding2genome CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTCTCC-CCTGAAGACAGTGAGCTGGAG gacatggcctggaggacagggagcaactccctgctcccttatctgcatagCATCCATTCACAACCCAGCATCTCCCTCCAGCCCTCCTCACCCAGCTCCTCGACAAGGCTAGTGACCCCCATCTAGGAACCCTCTCCCCCTGAAGACAGTGAGCTGGAGgtgagcgggggctgggagccaggtcagctcggcttggtgggaaggtggta Alignment from GeneWise CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACCCTC-TCCCCTGAAGACAGTGAGCTGGAG gacatggcctggaggacagggagcaactccctgctcccttatctgcatagCATCCATTCACAACCCAGCATCTCCCTCCAGCCCTCCTCACCCAGCTCCTCGACAAGGCTAGTGACCCCCATCTAGGAACCCTCTCCCCCTGAAGACAGTGAGCTGGAGgtgagcgggggctgggagccaggtcagctcggcttggtgggaaggtggta #### Map4k2_ID1635_14 --> 2 - 0 Original Alignment ttCACCAAGTGAAATTCGGT-GCTCCTCGCCGGAAGGAGACAGATCCTCTCAATGAACCG tctactctgagacttggaccaccttttaagcctgctcttttccttttcagttCACCAAGTGAAATTTGGTCGCTCCTCGCCGGAAGGAGACAGATCCTCTCAATGAACCAgtaggacactgactatgtgtgtgtagcgggggttcagggaagggaggcct Alignment from CESAR ttCACCAAGTGAAATTCGGT-GCTCCTCGCCGGAAGGAGACAGATCCTCTCAATGAACCG tctactctgagacttggaccaccttttaagcctgctcttttccttttcagttCACCAAGTGAAATTTGGTCGCTCCTCGCCGGAAGGAGACAGATCCTCTCAATGAACCAgtaggacactgactatgtgtgtgtagcgggggttcagggaagggaggcct Alignment from Spaln_aa2Genome TTCACCAAGTGAAATTCGGT-GCTCCTCGCCGGAAGGAGACAGATCCTCTCAATGAACCG tctactctgagacttggaccaccttttaagcctgctcttttccttttcagTTCACCAAGTGAAATTTGGTcGCTCCTCGCCGGAAGGAGACAGATCCTCTCAATGAACCAgtaggacactgactatgtgtgtgtagcgggggttcagggaagggaggcct Alignment from Spaln_nt2Genome TTCACCAAGTGAAATTCGGT-GCTCCTCGCCGGAAGGAGACAGATCCTCTCAATGAACCG tctactctgagacttggaccaccttttaagcctgctcttttccttttcagTTCACCAAGTGAAATTTGGTCGCTCCTCGCCGGAAGGAGACAGATCCTCTCAATGAACCAgtaggacactgactatgtgtgtgtagcgggggttcagggaagggaggcct Alignment from Pairagon TTCACCAAGTGAAATTCGGT-GCTCCTCGCCGGAAGGAGACAGATCCTCTCAATGAACCG tctactctgagacttggaccaccttttaagcctgctcttttccttttcagTTCACCAAGTGAAATTTGGTCGCTCCTCGCCGGAAGGAGACAGATCCTCTCAATGAACCAgtaggacactgactatgtgtgtgtagcgggggttcagggaagggaggcct Alignment from Exonerate_protein2genome TTCACCAAGTGAAATTCGGT-GCTCCTCGCCGGAAGGAGACAGATCCTCTCAATGAACCG tctactctgagacttggaccaccttttaagcctgctcttttccttttcagTTCACCAAGTGAAATTTGGTCGCTCCTCGCCGGAAGGAGACAGATCCTCTCAATGAACCAgtaggacactgactatgtgtgtgtagcgggggttcagggaagggaggcct Alignment from Exonerate_coding2genome TTCACCAAGTGAAATTCGGT-GCTCCTCGCCGGAAGGAGACAGATCCTCTCAATGAACCG tctactctgagacttggaccaccttttaagcctgctcttttccttttcagTTCACCAAGTGAAATTTGGTCGCTCCTCGCCGGAAGGAGACAGATCCTCTCAATGAACCAgtaggacactgactatgtgtgtgtagcgggggttcagggaagggaggcct Alignment from GeneWise TTCACCAAGTGAAATTCGGT-GCTCCTCGCCGGAAGGAGACAGATCCTCTCAATGAACCG tctactctgagacttggaccaccttttaagcctgctcttttccttttcagTTCACCAAGTGAAATTTGGTCGCTCCTCGCCGGAAGGAGACAGATCCTCTCAATGAACCAgtaggacactgactatgtgtgtgtagcgggggttcagggaagggaggcct #### Map4k2_ID1639_18 --> 0 - 1 Original Alignment GAGCTGGACTCCCCGGATGAT-GCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAg tcatgggacacctgctaatgagaccagggtcagctgtcccctttctccagGAGCTGGACTCCCCGGATGATCGCCATTGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACCGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAggtgagcccaagggctggcaggccacacggtattctggggtagtgctgggg Alignment from CESAR GAGCTGGACTCCCCGGATGAT-GCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAg tcatgggacacctgctaatgagaccagggtcagctgtcccctttctccagGAGCTGGACTCCCCGGATGATCGCCATTGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACCGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAggtgagcccaagggctggcaggccacacggtattctggggtagtgctgggg Alignment from Spaln_aa2Genome GAGCTGGACTCCCCGGATGAT-GCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG tcatgggacacctgctaatgagaccagggtcagctgtcccctttctccagGAGCTGGACTCCCCGGATGATcGCCATTGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACCGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAGgtgagcccaagggctggcaggccacacggtattctggggtagtgctgggg Alignment from Spaln_nt2Genome GAGCTGGACTCCCCGGATGAT-GCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG tcatgggacacctgctaatgagaccagggtcagctgtcccctttctccagGAGCTGGACTCCCCGGATGATCGCCATTGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACCGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAGgtgagcccaagggctggcaggccacacggtattctggggtagtgctgggg Alignment from Pairagon GAGCTGGACTCCCCGGATGAT-GCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG tcatgggacacctgctaatgagaccagggtcagctgtcccctttctccagGAGCTGGACTCCCCGGATGATCGCCATTGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACCGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAGgtgagcccaagggctggcaggccacacggtattctggggtagtgctgggg Alignment from Exonerate_protein2genome GAGCTGGACTCCCCGGATGAT-GCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG tcatgggacacctgctaatgagaccagggtcagctgtcccctttctccagGAGCTGGACTCCCCGGATGATCGCCATTGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACCGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAGgtgagcccaagggctggcaggccacacggtattctggggtagtgctgggg Alignment from Exonerate_coding2genome GAGCTGGACTCCCCGGATGAT-GCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG tcatgggacacctgctaatgagaccagggtcagctgtcccctttctccagGAGCTGGACTCCCCGGATGATCGCCATTGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACCGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAGgtgagcccaagggctggcaggccacacggtattctggggtagtgctgggg Alignment from GeneWise AGGCCCTGGAGGAAAGGAGCCTGACTATCCGGCCAGCCTTAGAACTCCAGGAGCTGGACTCCCCGGATGAT-GCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG GACACCTGCTAATGAGACCAGGGTCAGCTGTCCCCTTTCTC------CAGGAGCTGGACTCCCCGGATGATCGCCATTGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCACACCGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAGgtgagcccaagggctggcaggccacacggtattctggggtagtgctgggg #### Map4k2_ID1641_20 --> 0 - 0 Original Alignment CGATCATCCTGCCATGGGCTTCCT-CCCACCCCCAAGGTGCAC ggtgctgcagggtgccacccaggccctgcccttcctctccttccccttagCGATCATCCTGCCATGGGCTTCCTCCCCACCCCCAAGGTTCACgtgagtggtcatggctgtccctagggcctgctgtcctggcactgccgatt Alignment from CESAR CGATCATCCTGCCATGGGCTTCCT-CCCACCCCCAAGGTGCAC ggtgctgcagggtgccacccaggccctgcccttcctctccttccccttagCGATCATCCTGCCATGGGCTTCCTCCCCACCCCCAAGGTTCACgtgagtggtcatggctgtccctagggcctgctgtcctggcactgccgatt Alignment from Spaln_aa2Genome CGATCATCCTGCCATGGGCTTCCT-CCCACCCCCAAGGTGCAC ggtgctgcagggtgccacccaggccctgcccttcctctccttccccttagCGATCATCCTGCCATGGGCTTCCTcCCCACCCCCAAGGTTCACgtgagtggtcatggctgtccctagggcctgctgtcctggcactgccgatt Alignment from Spaln_nt2Genome CGATCATCCTGCCATGGGCTTCCTCCC-ACCCCCAAGGTGCAC ggtgctgcagggtgccacccaggccctgcccttcctctccttccccttagCGATCATCCTGCCATGGGCTTCCTCCCCACCCCCAAGGTTCACgtgagtggtcatggctgtccctagggcctgctgtcctggcactgccgatt Alignment from Pairagon CGATCATCCTGCCATGGGCTTCCT-CCCACCCCCAAGGTGCAC ggtgctgcagggtgccacccaggccctgcccttcctctccttccccttagCGATCATCCTGCCATGGGCTTCCTCCCCACCCCCAAGGTTCACgtgagtggtcatggctgtccctagggcctgctgtcctggcactgccgatt Alignment from Exonerate_protein2genome CGATCATCCTGCCATGGGCTTCCT-CCCACCCCCAAGGTGCAC ggtgctgcagggtgccacccaggccctgcccttcctctccttccccttagCGATCATCCTGCCATGGGCTTCCTCCCCACCCCCAAGGTTCACgtgagtggtcatggctgtccctagggcctgctgtcctggcactgccgatt Alignment from Exonerate_coding2genome CGATCATCCTGCCATGGGCTTCCT-CCCACCCCCAAGGTGCAC ggtgctgcagggtgccacccaggccctgcccttcctctccttccccttagCGATCATCCTGCCATGGGCTTCCTCCCCACCCCCAAGGTTCACgtgagtggtcatggctgtccctagggcctgctgtcctggcactgccgatt Alignment from GeneWise CGATCATCCTGCCATGGGCTTCCTCCC-ACCCCCAAGGTGCAC ggtgctgcagggtgccacccaggccctgcccttcctctccttccccttagCGATCATCCTGCCATGGGCTTCCTCCCCACCCCCAAGGTTCACgtgagtggtcatggctgtccctagggcctgctgtcctggcactgccgatt #### Mark2_ID2108_13 --> 2 - 0 Original Alignment ccGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAG-ACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggctctgcaggagaccgtagtcttatcaggtctcgctctgttcatagccGTCCCTGCCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAGCACGGGGCGGAAAGCCAGCAGCACTGCCAAAGTGCCAGCCAGCCCTCTGCCAGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACGgtaatgcttgagctactaccccctggcctggcctccctcttctccgctca Alignment from CESAR ccGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAG-ACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggctctgcaggagaccgtagtcttatcaggtctcgctctgttcatagccGTCCCTGCCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAGCACGGGGCGGAAAGCCAGCAGCACTGCCAAAGTGCCAGCCAGCCCTCTGCCAGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACGgtaatgcttgagctactaccccctggcctggcctccctcttctccgctca Alignment from Spaln_aa2Genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAG-ACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggctctgcaggagaccgtagtcttatcaggtctcgctctgttcatagCCGTCCCTGCCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAGcACGGGGCGGAAAGCCAGCAGCACTGCCAAAGTGCCAGCCAGCCCTCTGCCAGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACGgtaatgcttgagctactaccccctggcctggcctccctcttctccgctca Alignment from Spaln_nt2Genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAG-ACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggctctgcaggagaccgtagtcttatcaggtctcgctctgttcatagCCGTCCCTGCCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAGCACGGGGCGGAAAGCCAGCAGCACTGCCAAAGTGCCAGCCAGCCCTCTGCCAGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACGgtaatgcttgagctactaccccctggcctggcctccctcttctccgctca Alignment from Pairagon CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAG-ACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggctctgcaggagaccgtagtcttatcaggtctcgctctgttcatagCCGTCCCTGCCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAGCACGGGGCGGAAAGCCAGCAGCACTGCCAAAGTGCCAGCCAGCCCTCTGCCAGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACGgtaatgcttgagctactaccccctggcctggcctccctcttctccgctca Alignment from Exonerate_protein2genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAG-ACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggctctgcaggagaccgtagtcttatcaggtctcgctctgttcatagCCGTCCCTGCCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAGCACGGGGCGGAAAGCCAGCAGCACTGCCAAAGTGCCAGCCAGCCCTCTGCCAGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACGgtaatgcttgagctactaccccctggcctggcctccctcttctccgctca Alignment from Exonerate_coding2genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAG-ACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggctctgcaggagaccgtagtcttatcaggtctcgctctgttcatagCCGTCCCTGCCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAGCACGGGGCGGAAAGCCAGCAGCACTGCCAAAGTGCCAGCCAGCCCTCTGCCAGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACGgtaatgcttgagctactaccccctggcctggcctccctcttctccgctca Alignment from GeneWise CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAG-ACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggctctgcaggagaccgtagtcttatcaggtctcgctctgttcatagCCGTCCCTGCCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAGCACGGGGCGGAAAGCCAGCAGCACTGCCAAAGTGCCAGCCAGCCCTCTGCCAGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACGgtaatgcttgagctactaccccctggcctggcctccctcttctccgctca #### Mark2_ID2112_9 --> 0 - 0 Original Alignment GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGAC-TGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG cttatctggatcgtaaagtaagataagaatctctgcctccccaccctcagGAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACCTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAGgtaagaaacctaaaatccagtcggcaaaggaaaatcctgatgttcccatg Alignment from CESAR GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGAC-TGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG cttatctggatcgtaaagtaagataagaatctctgcctccccaccctcagGAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACCTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAGgtaagaaacctaaaatccagtcggcaaaggaaaatcctgatgttcccatg Alignment from Spaln_aa2Genome GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGAC-TGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG cttatctggatcgtaaagtaagataagaatctctgcctccccaccctcagGAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACcTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAGgtaagaaacctaaaatccagtcggcaaaggaaaatcctgatgttcccatg Alignment from Spaln_nt2Genome GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGA-CTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG cttatctggatcgtaaagtaagataagaatctctgcctccccaccctcagGAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACCTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAGgtaagaaacctaaaatccagtcggcaaaggaaaatcctgatgttcccatg Alignment from Pairagon GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGA-CTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG cttatctggatcgtaaagtaagataagaatctctgcctccccaccctcagGAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACCTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAGgtaagaaacctaaaatccagtcggcaaaggaaaatcctgatgttcccatg Alignment from Exonerate_protein2genome GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGAC-TGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG cttatctggatcgtaaagtaagataagaatctctgcctccccaccctcagGAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACCTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAGgtaagaaacctaaaatccagtcggcaaaggaaaatcctgatgttcccatg Alignment from Exonerate_coding2genome GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGAC-TGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG cttatctggatcgtaaagtaagataagaatctctgcctccccaccctcagGAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACCTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAGgtaagaaacctaaaatccagtcggcaaaggaaaatcctgatgttcccatg Alignment from GeneWise GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACG-GACTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAG cttatctggatcgtaaagtaagataagaatctctgcctccccaccctcagGAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACCTGTGAAAATCTGCTTAAGAAATTTCTCATACTTAATCCTAGTAAGAGAGGCACTTTAGAGgtaagaaacctaaaatccagtcggcaaaggaaaatcctgatgttcccatg #### Mrpl11_ID768_3 --> 0 - 1 Original Alignment CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCC-ACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAg ttgaactggatagaaaatggagaaattcttttttttttttgaacatgcagCCTGACAGGACATTTGAGCTCAAGATTGGGCAGCCCCACTGTTTCATACTTGCTGAAGGCAGCTGCTGGGATTGAGAAGGGAGCCCGGCATACAggtaaaaactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from CESAR CCCGACAGGACATTTGAGCTCAAGATTGGGCAG-CCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAg ttgaactggatagaaaatggagaaattcttttttttttttgaacatgcagCCTGACAGGACATTTGAGCTCAAGATTGGGCAGCCCCACTGTTTCATACTTGCTGAAGGCAGCTGCTGGGATTGAGAAGGGAGCCCGGCATACAggtaaaaactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from Spaln_aa2Genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAG-CCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatagaaaatggagaaattcttttttttttttgaacatgcagCCTGACAGGACATTTGAGCTCAAGATTGGGCAGcCCCACTGTTTCATACTTGCTGAAGGCAGCTGCTGGGATTGAGAAGGGAGCCCGGCATACAGgtaaaaactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from Spaln_nt2Genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAG-CCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatagaaaatggagaaattcttttttttttttgaacatgcagCCTGACAGGACATTTGAGCTCAAGATTGGGCAGCCCCACTGTTTCATACTTGCTGAAGGCAGCTGCTGGGATTGAGAAGGGAGCCCGGCATACAGgtaaaaactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from Pairagon CCCGACAGGACATTTGAGCTCAAGATTGGGCAG-CCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatagaaaatggagaaattcttttttttttttgaacatgcagCCTGACAGGACATTTGAGCTCAAGATTGGGCAGCCCCACTGTTTCATACTTGCTGAAGGCAGCTGCTGGGATTGAGAAGGGAGCCCGGCATACAGgtaaaaactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from Exonerate_protein2genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAG-CCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatagaaaatggagaaattcttttttttttttgaacatgcagCCTGACAGGACATTTGAGCTCAAGATTGGGCAGCCCCACTGTTTCATACTTGCTGAAGGCAGCTGCTGGGATTGAGAAGGGAGCCCGGCATACAGgtaaaaactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from Exonerate_coding2genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCC---CACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatagaaaatggagaaattcttttttttttttgaacatgcagCCTGACAGGACATTTGAGCTCAAGATTGGGCAG--CCCCACTGTTTCATACTTGCTGAAGGCAGCTGCTGGGATTGAGAAGGGAGCCCGGCATACAGgtaaaaactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from GeneWise CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCC-ACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatagaaaatggagaaattcttttttttttttgaacatgcagCCTGACAGGACATTTGAGCTCAAGATTGGGCAGCCCCACTGTTTCATACTTGCTGAAGGCAGCTGCTGGGATTGAGAAGGGAGCCCGGCATACAGgtaaaaactagattgggcagctgggtgtctgatgaatctggagaaatgta #### Mrpl43_ID9260_2 --> 1 - 1 Original Alignment gGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTC-GTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACc ctatggggctggggtcaggccactctacgctcccaccccttatatttcaggGAGTTTGTGGAACGCGAGGTGACCGACTTTGCCCGACGGAACCCAGGAGTTCGTAGTATACGTGAACCCACGCCCATGCGCCATGCCACGAATAGTGGCAGAATACcgtaaccggggctgagctagggcgggggtgggcagtgcaggatcccagctt Alignment from CESAR gGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTC-GTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACc ctatggggctggggtcaggccactctacgctcccaccccttatatttcaggGAGTTTGTGGAACGCGAGGTGACCGACTTTGCCCGACGGAACCCAGGAGTTCGTAGTATACGTGAACCCACGCCCATGCGCCATGCCACGAATAGTGGCAGAATACcgtaaccggggctgagctagggcgggggtgggcagtgcaggatcccagctt Alignment from Spaln_aa2Genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTC-GTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ctatggggctggggtcaggccactctacgctcccaccccttatatttcagGGAGTTTGTGGAACGCGAGGTGACCGACTTTGCCCGACGGAACCCAGGAGTTcGTAGTATACGTGAACCCACGCCCATGCGCCATGCCACGAATAGTGGCAGAATACCgtaaccggggctgagctagggcgggggtgggcagtgcaggatcccagctt Alignment from Spaln_nt2Genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAG-TCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ctatggggctggggtcaggccactctacgctcccaccccttatatttcagGGAGTTTGTGGAACGCGAGGTGACCGACTTTGCCCGACGGAACCCAGGAGTTCGTAGTATACGTGAACCCACGCCCATGCGCCATGCCACGAATAGTGGCAGAATACCgtaaccggggctgagctagggcgggggtgggcagtgcaggatcccagctt Alignment from Pairagon GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAG-TCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ctatggggctggggtcaggccactctacgctcccaccccttatatttcagGGAGTTTGTGGAACGCGAGGTGACCGACTTTGCCCGACGGAACCCAGGAGTTCGTAGTATACGTGAACCCACGCCCATGCGCCATGCCACGAATAGTGGCAGAATACCgtaaccggggctgagctagggcgggggtgggcagtgcaggatcccagctt Alignment from Exonerate_protein2genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTC-GTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ctatggggctggggtcaggccactctacgctcccaccccttatatttcagGGAGTTTGTGGAACGCGAGGTGACCGACTTTGCCCGACGGAACCCAGGAGTTCGTAGTATACGTGAACCCACGCCCATGCGCCATGCCACGAATAGTGGCAGAATACCgtaaccggggctgagctagggcgggggtgggcagtgcaggatcccagctt Alignment from Exonerate_coding2genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTC-GTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ctatggggctggggtcaggccactctacgctcccaccccttatatttcagGGAGTTTGTGGAACGCGAGGTGACCGACTTTGCCCGACGGAACCCAGGAGTTCGTAGTATACGTGAACCCACGCCCATGCGCCATGCCACGAATAGTGGCAGAATACCgtaaccggggctgagctagggcgggggtgggcagtgcaggatcccagctt Alignment from GeneWise GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTC-GTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ctatggggctggggtcaggccactctacgctcccaccccttatatttcagGGAGTTTGTGGAACGCGAGGTGACCGACTTTGCCCGACGGAACCCAGGAGTTCGTAGTATACGTGAACCCACGCCCATGCGCCATGCCACGAATAGTGGCAGAATACCgtaaccggggctgagctagggcgggggtgggcagtgcaggatcccagctt #### Mta2_ID2535_8 --> 1 - 0 Original Alignment aGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGT-GCAGCTGCTGCGTCCCGAGATATCACTCTG cttgaattttgaaggggagaaccctcctcatgctgcttcctgtgttctagcGCTGTGGGAACCTTTGTGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTCGCA------GCATCCCGAGATATCACTCTGgtaaccgccaactgacagatagttgggcatgttaaggcaagagtggaggg Alignment from CESAR aGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG cttgaattttgaaggggagaaccctcctcatgctgcttcctgtgttctagcGCTGTGGGAACCTTTGTGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGT--C---GCAGCATCCCGAGATATCACTCTGgtaaccgccaactgacagatagttgggcatgttaaggcaagagtggaggg Alignment from Spaln_aa2Genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG cttgaattttgaaggggagaaccctcctcatgctgcttcctgtgttctagCGCTGTGGGAACCTTTGTGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTC-----GCAGCATCCCGAGATATCACTCTGgtaaccgccaactgacagatagttgggcatgttaaggcaagagtggaggg Alignment from Spaln_nt2Genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG cttgaattttgaaggggagaaccctcctcatgctgcttcctgtgttctagCGCTGTGGGAACCTTTGTGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGT-----CGCAGCATCCCGAGATATCACTCTGgtaaccgccaactgacagatagttgggcatgttaaggcaagagtggaggg Alignment from Pairagon AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG cttgaattttgaaggggagaaccctcctcatgctgcttcctgtgttctagCGCTGTGGGAACCTTTGTGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGT-----CGCAGCATCCCGAGATATCACTCTGgtaaccgccaactgacagatagttgggcatgttaaggcaagagtggaggg Alignment from Exonerate_protein2genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGT-GCAGCTGCTGCGTCCCGAGATATCACTCTG cttgaattttgaaggggagaaccctcctcatgctgcttcctgtgttctagCGCTGTGGGAACCTTTGTGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTCGCA------GCATCCCGAGATATCACTCTGgtaaccgccaactgacagatagttgggcatgttaaggcaagagtggaggg Alignment from Exonerate_coding2genome AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGT-GCAGCTGCTGCGTCCCGAGATATCACTCTG cttgaattttgaaggggagaaccctcctcatgctgcttcctgtgttctagCGCTGTGGGAACCTTTGTGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTCGCA------GCATCCCGAGATATCACTCTGgtaaccgccaactgacagatagttgggcatgttaaggcaagagtggaggg Alignment from GeneWise AGCTGTGGGAACCTTCGCGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG cttgaattttgaaggggagaaccctcctcatgctgcttcctgtgttctagCGCTGTGGGAACCTTTGTGAGAGCCCTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTC--GCAGCA---TCCCGAGATATCACTCTGgtaaccgccaactgacagatagttgggcatgttaaggcaagagtggaggg #### Mta2_ID2537_10 --> 0 - 0 Original Alignment CTACCCTGGAAGTCACTTGCAAGC-ATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG cgatggcgctaggaacacatacaatctcatttcttgctgttcatttttagCTACCCTGGAAGTCACTTGCAAGCCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtgagcgtcaggctagctgaaaggctggaccagaggctatctgattacct Alignment from CESAR CTACCCTGGAAGTCACTTGCAAGC-ATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG cgatggcgctaggaacacatacaatctcatttcttgctgttcatttttagCTACCCTGGAAGTCACTTGCAAGCCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtgagcgtcaggctagctgaaaggctggaccagaggctatctgattacct Alignment from Spaln_aa2Genome CTACCCTGGAAGTCACTTGCAAGC-ATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG cgatggcgctaggaacacatacaatctcatttcttgctgttcatttttagCTACCCTGGAAGTCACTTGCAAGCcATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtgagcgtcaggctagctgaaaggctggaccagaggctatctgattacct Alignment from Spaln_nt2Genome CTACCCTGGAAGTCACTTGCAAG-CATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG cgatggcgctaggaacacatacaatctcatttcttgctgttcatttttagCTACCCTGGAAGTCACTTGCAAGCCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtgagcgtcaggctagctgaaaggctggaccagaggctatctgattacct Alignment from Pairagon CTACCCTGGAAGTCACTTGCAAG-CATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG cgatggcgctaggaacacatacaatctcatttcttgctgttcatttttagCTACCCTGGAAGTCACTTGCAAGCCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtgagcgtcaggctagctgaaaggctggaccagaggctatctgattacct Alignment from Exonerate_protein2genome CTACCCTGGAAGTCACTTGCAAGC-ATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG cgatggcgctaggaacacatacaatctcatttcttgctgttcatttttagCTACCCTGGAAGTCACTTGCAAGCCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtgagcgtcaggctagctgaaaggctggaccagaggctatctgattacct Alignment from Exonerate_coding2genome CTACCCTGGAAGTCACTTGCAAGC-ATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG cgatggcgctaggaacacatacaatctcatttcttgctgttcatttttagCTACCCTGGAAGTCACTTGCAAGCCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtgagcgtcaggctagctgaaaggctggaccagaggctatctgattacct Alignment from GeneWise CTACCCTGGAAGTCACTTGCA-AGCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAG cgatggcgctaggaacacatacaatctcatttcttgctgttcatttttagCTACCCTGGAAGTCACTTGCAAGCCATAGTCCAGTTTTATTACATGTGGAAAACCACAGACCGGTATATTCAGCAGgtgagcgtcaggctagctgaaaggctggaccagaggctatctgattacct #### Mta2_ID2538_11 --> 0 - 2 Original Alignment AAAAGATTGAAAGCTGCTGAAGCAGAC-AGCAAACTGAAACAGGTCTACATCCCCACTta atttgtgttgagatgctctgaatttcttttgggaatcatttttgctgcagAAAAGATTAAAAGCTGCAGAAGCAGACCAGCAAACTGAAACAGGTCTACATCCCCACTtagtaaggttggcagcaatgcacaaagtcaggaatacctcctgggccaagga Alignment from CESAR AAAAGATTGAAAGCTGCTGAAGCAGAC-AGCAAACTGAAACAGGTCTACATCCCCACTta atttgtgttgagatgctctgaatttcttttgggaatcatttttgctgcagAAAAGATTAAAAGCTGCAGAAGCAGACCAGCAAACTGAAACAGGTCTACATCCCCACTtagtaaggttggcagcaatgcacaaagtcaggaatacctcctgggccaagga Alignment from Spaln_aa2Genome AAAAGATTGAAAGCTGCTGAAGCAGAC-AGCAAACTGAAACAGGTCTACATCCCCACTTA atttgtgttgagatgctctgaatttcttttgggaatcatttttgctgcagAAAAGATTAAAAGCTGCAGAAGCAGACcAGCAAACTGAAACAGGTCTACATCCCCACTTAgtaaggttggcagcaatgcacaaagtcaggaatacctcctgggccaagga Alignment from Spaln_nt2Genome AAAAGATTGAAAGCTGCTGAAGCAGA-CAGCAAACTGAAACAGGTCTACATCCCCACTTA atttgtgttgagatgctctgaatttcttttgggaatcatttttgctgcagAAAAGATTAAAAGCTGCAGAAGCAGACCAGCAAACTGAAACAGGTCTACATCCCCACTTAgtaaggttggcagcaatgcacaaagtcaggaatacctcctgggccaagga Alignment from Pairagon AAAAGATTGAAAGCTGCTGAAGCAGA-CAGCAAACTGAAACAGGTCTACATCCCCACTTA atttgtgttgagatgctctgaatttcttttgggaatcatttttgctgcagAAAAGATTAAAAGCTGCAGAAGCAGACCAGCAAACTGAAACAGGTCTACATCCCCACTTAgtaaggttggcagcaatgcacaaagtcaggaatacctcctgggccaagga Alignment from Exonerate_protein2genome AAAAGATTGAAAGCTGCTGAAGCAGAC-AGCAAACTGAAACAGGTCTACATCCCCACTTA atttgtgttgagatgctctgaatttcttttgggaatcatttttgctgcagAAAAGATTAAAAGCTGCAGAAGCAGACCAGCAAACTGAAACAGGTCTACATCCCCACTTAgtaaggttggcagcaatgcacaaagtcaggaatacctcctgggccaagga Alignment from Exonerate_coding2genome AAAAGATTGAAAGCTGCTGAAGCAGAC-AGCAAACTGAAACAGGTCTACATCCCCACTTA atttgtgttgagatgctctgaatttcttttgggaatcatttttgctgcagAAAAGATTAAAAGCTGCAGAAGCAGACCAGCAAACTGAAACAGGTCTACATCCCCACTTAgtaaggttggcagcaatgcacaaagtcaggaatacctcctgggccaagga Alignment from GeneWise atttgtgttgagatgctctgaatttcttttgggaatcatttttgctgcagaaaagattaaaagctgcagaagcagaccagcaaactgaaacaggtctacatccccacttagtaaggttggcagcaatgcacaaagtcaggaatacctcctgggccaagga #### Mta2_ID2539_12 --> 1 - 1 Original Alignment tACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAAT-GGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACa ggttgtttcctttactgccttctttctcttctcctcctctggactcctagtACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAGCCTGGCATGAATCGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGTCACagtgggatccaagcggggacagggttgggttacatggtcccagtgggctta Alignment from CESAR tACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAAT-GGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACa ggttgtttcctttactgccttctttctcttctcctcctctggactcctagtACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAGCCTGGCATGAATCGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGTCACagtgggatccaagcggggacagggttgggttacatggtcccagtgggctta Alignment from Spaln_aa2Genome TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAAT-GGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA ggttgtttcctttactgccttctttctcttctcctcctctggactcctagTACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAGCCTGGCATGAATcGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGTCACAgtgggatccaagcggggacagggttgggttacatggtcccagtgggctta Alignment from Spaln_nt2Genome TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATG-GGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA ggttgtttcctttactgccttctttctcttctcctcctctggactcctagTACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAGCCTGGCATGAATCGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGTCACAgtgggatccaagcggggacagggttgggttacatggtcccagtgggctta Alignment from Pairagon TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAAT-GGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA ggttgtttcctttactgccttctttctcttctcctcctctggactcctagTACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAGCCTGGCATGAATCGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGTCACAgtgggatccaagcggggacagggttgggttacatggtcccagtgggctta Alignment from Exonerate_protein2genome TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAAT-GGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA ggttgtttcctttactgccttctttctcttctcctcctctggactcctagTACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAGCCTGGCATGAATCGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGTCACAgtgggatccaagcggggacagggttgggttacatggtcccagtgggctta Alignment from Exonerate_coding2genome TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAAT-GGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA ggttgtttcctttactgccttctttctcttctcctcctctggactcctagTACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAGCCTGGCATGAATCGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGTCACAgtgggatccaagcggggacagggttgggttacatggtcccagtgggctta Alignment from GeneWise TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAAT-GGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA ggttgtttcctttactgccttctttctcttctcctcctctggactcctagTACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAGCCTGGCATGAATCGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGTCACAgtgggatccaagcggggacagggttgggttacatggtcccagtgggctta #### Mta2_ID2540_13 --> 2 - 0 Original Alignment ccACACAGTCTGCCCAGTGG-TATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA ggtggcatatttcctgccagcaaatttctttctggtcctctgatcctcagccACACAGTCTGCCCAGTGGCTATGCCTGGGGACCCCCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGATTTATTGGAAAAAATATGGGGGCCTGAAGACCCCTACCCAACTAGAAGGGGCTGCTCGGGGCACCACAgtatgtgtcagtgggttggaacttggcatggtgactaaggcaggtgggga Alignment from CESAR ccACACAGTCTGCCCAGTGG-TATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA ggtggcatatttcctgccagcaaatttctttctggtcctctgatcctcagccACACAGTCTGCCCAGTGGCTATGCCTGGGGACCCCCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGATTTATTGGAAAAAATATGGGGGCCTGAAGACCCCTACCCAACTAGAAGGGGCTGCTCGGGGCACCACAgtatgtgtcagtgggttggaacttggcatggtgactaaggcaggtgggga Alignment from Spaln_aa2Genome CCACACAGTCTGCCCAGTGG-TATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA ggtggcatatttcctgccagcaaatttctttctggtcctctgatcctcagCCACACAGTCTGCCCAGTGGcTATGCCTGGGGACCCCCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGATTTATTGGAAAAAATATGGGGGCCTGAAGACCCCTACCCAACTAGAAGGGGCTGCTCGGGGCACCACAgtatgtgtcagtgggttggaacttggcatggtgactaaggcaggtgggga Alignment from Spaln_nt2Genome CCACACAGTCTGCCCAGTGG-TATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA ggtggcatatttcctgccagcaaatttctttctggtcctctgatcctcagCCACACAGTCTGCCCAGTGGCTATGCCTGGGGACCCCCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGATTTATTGGAAAAAATATGGGGGCCTGAAGACCCCTACCCAACTAGAAGGGGCTGCTCGGGGCACCACAgtatgtgtcagtgggttggaacttggcatggtgactaaggcaggtgggga Alignment from Pairagon CCACACAGTCTGCCCAGTGG-TATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA ggtggcatatttcctgccagcaaatttctttctggtcctctgatcctcagCCACACAGTCTGCCCAGTGGCTATGCCTGGGGACCCCCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGATTTATTGGAAAAAATATGGGGGCCTGAAGACCCCTACCCAACTAGAAGGGGCTGCTCGGGGCACCACAgtatgtgtcagtgggttggaacttggcatggtgactaaggcaggtgggga Alignment from Exonerate_protein2genome CCACACAGTCTGCCCAGTGG-TATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA ggtggcatatttcctgccagcaaatttctttctggtcctctgatcctcagCCACACAGTCTGCCCAGTGGCTATGCCTGGGGACCCCCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGATTTATTGGAAAAAATATGGGGGCCTGAAGACCCCTACCCAACTAGAAGGGGCTGCTCGGGGCACCACAgtatgtgtcagtgggttggaacttggcatggtgactaaggcaggtgggga Alignment from Exonerate_coding2genome CCACACAGTCTGCCCAGTGG-TATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA ggtggcatatttcctgccagcaaatttctttctggtcctctgatcctcagCCACACAGTCTGCCCAGTGGCTATGCCTGGGGACCCCCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGATTTATTGGAAAAAATATGGGGGCCTGAAGACCCCTACCCAACTAGAAGGGGCTGCTCGGGGCACCACAgtatgtgtcagtgggttggaacttggcatggtgactaaggcaggtgggga Alignment from GeneWise ----TATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA ggtggcatatttcctgccagcaaatttctttctggtcctctgatcctcagccacacagtctgcccagTGGCTATGCCTGGGGACCCCCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGATTTATTGGAAAAAATATGGGGGCCTGAAGACCCCTACCCAACTAGAAGGGGCTGCTCGGGGCACCACAgtatgtgtcagtgggttggaacttggcatggtgactaaggcaggtgggga #### Mta2_ID2544_17 --> 0 - 2 Original Alignment ATGGCAGGGGCA-GGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCag gggttttatggatggtagttccttcattttctttctttcttctgaaacagATGGCAGGGGCACGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCCGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACGAAGGACACCaggtaagtagggagtctaccatgagaggctgagaggctggcaatccaagtcg Alignment from CESAR ATGGCAGGGGCA-GGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCag gggttttatggatggtagttccttcattttctttctttcttctgaaacagATGGCAGGGGCACGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCCGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACGAAGGACACCaggtaagtagggagtctaccatgagaggctgagaggctggcaatccaagtcg Alignment from Spaln_aa2Genome -----GCAGGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG gggttttatggatggtagttccttcattttctttctttcttctgaaacagATGGCAGGGGCACGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCCGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACGAAGGACACCAGgtaagtagggagtctaccatgagaggctgagaggctggcaatccaagtcg Alignment from Spaln_nt2Genome ATGGCAGGGGCA-GGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG gggttttatggatggtagttccttcattttctttctttcttctgaaacagATGGCAGGGGCACGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCCGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACGAAGGACACCAGgtaagtagggagtctaccatgagaggctgagaggctggcaatccaagtcg Alignment from Pairagon ATGGCAGGGGCA-GGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG gggttttatggatggtagttccttcattttctttctttcttctgaaacagATGGCAGGGGCACGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCCGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACGAAGGACACCAGgtaagtagggagtctaccatgagaggctgagaggctggcaatccaagtcg Alignment from Exonerate_protein2genome ATGGCAGGGGCA-GGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG gggttttatggatggtagttccttcattttctttctttcttctgaaacagATGGCAGGGGCACGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCCGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACGAAGGACACCAGgtaagtagggagtctaccatgagaggctgagaggctggcaatccaagtcg Alignment from Exonerate_coding2genome ATGGCAGGGGCA-GGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG gggttttatggatggtagttccttcattttctttctttcttctgaaacagATGGCAGGGGCACGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCCGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACGAAGGACACCAGgtaagtagggagtctaccatgagaggctgagaggctggcaatccaagtcg Alignment from GeneWise GGGGCAGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG gggttttatggatggtagttccttcattttctttctttcttctgaaacagatggcagGGGCACGGGGTCCCCTTCTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCCGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACGAAGGACACCAGgtaagtagggagtctaccatgagaggctgagaggctggcaatccaagtcg #### Myrf_ID2720_17 --> 0 - 2 Original Alignment TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTG-CAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCag cctaactccaccatcttctgctgtgttccgagtgcctcctttccccacagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCaggtaggctgccctctcaggtactggggaggctgctttagaaagcagagcta Alignment from CESAR TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTG-CAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCag cctaactccaccatcttctgctgtgttccgagtgcctcctttccccacagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCaggtaggctgccctctcaggtactggggaggctgctttagaaagcagagcta Alignment from Spaln_aa2Genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAG-GGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactccaccatcttctgctgtgttccgagtgcctcctttccccacagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCCAgGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAGgtaggctgccctctcaggtactggggaggctgctttagaaagcagagcta Alignment from Spaln_nt2Genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTG-CAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactccaccatcttctgctgtgttccgagtgcctcctttccccacagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAGgtaggctgccctctcaggtactggggaggctgctttagaaagcagagcta Alignment from Pairagon TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTG-CAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactccaccatcttctgctgtgttccgagtgcctcctttccccacagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAGgtaggctgccctctcaggtactggggaggctgctttagaaagcagagcta Alignment from Exonerate_protein2genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTG-CAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactccaccatcttctgctgtgttccgagtgcctcctttccccacagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAGgtaggctgccctctcaggtactggggaggctgctttagaaagcagagcta Alignment from Exonerate_coding2genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTG-CAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactccaccatcttctgctgtgttccgagtgcctcctttccccacagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAGgtaggctgccctctcaggtactggggaggctgctttagaaagcagagcta Alignment from GeneWise TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTT-CTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactccaccatcttctgctgtgttccgagtgcctcctttccccacagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAGgtaggctgccctctcaggtactggggaggctgctttagaaagcagagcta #### Myrf_ID2721_16 --> 1 - 0 Original Alignment cCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCAC-AAAAAGAGGCCCCCTAAACTGGCCAATAAG ggagagacctcctttcagaaaacgtcctactcctgtcttctttgaaacagcCATGCAGGGAGCGAATTTAGTCGGGCAGGCAGTGTCCCCCACCAAAAAGAGGCCCCCTAAACTGGCCAATAAGgtacctctgtacaggggcaggaggcttcctgctcacctgatgtttctttc Alignment from CESAR cCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCAC-AAAAAGAGGCCCCCTAAACTGGCCAATAAG ggagagacctcctttcagaaaacgtcctactcctgtcttctttgaaacagcCATGCAGGGAGCGAATTTAGTCGGGCAGGCAGTGTCCCCCACCAAAAAGAGGCCCCCTAAACTGGCCAATAAGgtacctctgtacaggggcaggaggcttcctgctcacctgatgtttctttc Alignment from Spaln_aa2Genome CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCAC-AAAAAGAGGCCCCCTAAACTGGCCAATAAG ggagagacctcctttcagaaaacgtcctactcctgtcttctttgaaacagCCATGCAGGGAGCGAATTTAGTCGGGCAGGCAGTGTCCCCCACcAAAAAGAGGCCCCCTAAACTGGCCAATAAGgtacctctgtacaggggcaggaggcttcctgctcacctgatgtttctttc Alignment from Spaln_nt2Genome CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGT-CCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG ggagagacctcctttcagaaaacgtcctactcctgtcttctttgaaacagCCATGCAGGGAGCGAATTTAGTCGGGCAGGCAGTGTCCCCCACCAAAAAGAGGCCCCCTAAACTGGCCAATAAGgtacctctgtacaggggcaggaggcttcctgctcacctgatgtttctttc Alignment from Pairagon CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCA-CAAAAAGAGGCCCCCTAAACTGGCCAATAAG ggagagacctcctttcagaaaacgtcctactcctgtcttctttgaaacagCCATGCAGGGAGCGAATTTAGTCGGGCAGGCAGTGTCCCCCACCAAAAAGAGGCCCCCTAAACTGGCCAATAAGgtacctctgtacaggggcaggaggcttcctgctcacctgatgtttctttc Alignment from Exonerate_protein2genome CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCAC-AAAAAGAGGCCCCCTAAACTGGCCAATAAG ggagagacctcctttcagaaaacgtcctactcctgtcttctttgaaacagCCATGCAGGGAGCGAATTTAGTCGGGCAGGCAGTGTCCCCCACCAAAAAGAGGCCCCCTAAACTGGCCAATAAGgtacctctgtacaggggcaggaggcttcctgctcacctgatgtttctttc Alignment from Exonerate_coding2genome CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCAC-AAAAAGAGGCCCCCTAAACTGGCCAATAAG ggagagacctcctttcagaaaacgtcctactcctgtcttctttgaaacagCCATGCAGGGAGCGAATTTAGTCGGGCAGGCAGTGTCCCCCACCAAAAAGAGGCCCCCTAAACTGGCCAATAAGgtacctctgtacaggggcaggaggcttcctgctcacctgatgtttctttc Alignment from GeneWise CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCAC-AAAAAGAGGCCCCCTAAACTGGCCAATAAG ggagagacctcctttcagaaaacgtcctactcctgtcttctttgaaacagCCATGCAGGGAGCGAATTTAGTCGGGCAGGCAGTGTCCCCCACCAAAAAGAGGCCCCCTAAACTGGCCAATAAGgtacctctgtacaggggcaggaggcttcctgctcacctgatgtttctttc #### Myrf_ID2727_10 --> 1 - 2 Original Alignment gGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTC-AGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGag tgcagcacagctcctggcagcctcttgaactctggtctgcctgttgccaggGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACTGTGGGGCGGCTCCATTTCCACTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGaggtgagcaggctgacctggccccaggacccctctctccccctttctgagga Alignment from CESAR gGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTC-AGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGag tgcagcacagctcctggcagcctcttgaactctggtctgcctgttgccaggGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACTGTGGGGCGGCTCCATTTCCACTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGaggtgagcaggctgacctggccccaggacccctctctccccctttctgagga Alignment from Spaln_aa2Genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTC-AGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tgcagcacagctcctggcagcctcttgaactctggtctgcctgttgccagGGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACTGTGGGGCGGCTCCATTTCcACTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAGgtgagcaggctgacctggccccaggacccctctctccccctttctgagga Alignment from Spaln_nt2Genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCA-TTTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tgcagcacagctcctggcagcctcttgaactctggtctgcctgttgccagGGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACTGTGGGGCGGCTCCATTTCCACTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAGgtgagcaggctgacctggccccaggacccctctctccccctttctgagga Alignment from Pairagon GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTT-CAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tgcagcacagctcctggcagcctcttgaactctggtctgcctgttgccagGGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACTGTGGGGCGGCTCCATTTCCACTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAGgtgagcaggctgacctggccccaggacccctctctccccctttctgagga Alignment from Exonerate_protein2genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTC-AGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tgcagcacagctcctggcagcctcttgaactctggtctgcctgttgccagGGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACTGTGGGGCGGCTCCATTTCCACTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAGgtgagcaggctgacctggccccaggacccctctctccccctttctgagga Alignment from Exonerate_coding2genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTC-AGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tgcagcacagctcctggcagcctcttgaactctggtctgcctgttgccagGGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACTGTGGGGCGGCTCCATTTCCACTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAGgtgagcaggctgacctggccccaggacccctctctccccctttctgagga Alignment from GeneWise GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTC-AGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tgcagcacagctcctggcagcctcttgaactctggtctgcctgttgccagGGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACTGTGGGGCGGCTCCATTTCCACTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAGgtgagcaggctgacctggccccaggacccctctctccccctttctgagga #### Naa40_ID2073_7 --> 1 - 2 Original Alignment cACACAGATGAAGAAGGTGATG-TTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGca ccagcctttggattccgtctctaaaatgtctgataacttttcatctttagtACACAGATAAAGAAGGTGATGCTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCAGGAGGCACTGcagtgagtaatgaggcccaggtgtggtgcctcagggtggtcagggtagtccc Alignment from CESAR cACACAGATGAAGAAGGTGATG-TTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGca ccagcctttggattccgtctctaaaatgtctgataacttttcatctttagtACACAGATAAAGAAGGTGATGCTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCAGGAGGCACTGcagtgagtaatgaggcccaggtgtggtgcctcagggtggtcagggtagtccc Alignment from Spaln_aa2Genome CACACAGATGAAGAAGGTGATG-TTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGCA ccagcctttggattccgtctctaaaatgtctgataacttttcatctttagTACACAGATAAAGAAGGTGATGcTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCAGGAGGCACTGCAgtgagtaatgaggcccaggtgtggtgcctcagggtggtcagggtagtccc Alignment from Spaln_nt2Genome CACACAGATGAAGAAGGTGATG-TTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGCA ccagcctttggattccgtctctaaaatgtctgataacttttcatctttagTACACAGATAAAGAAGGTGATGCTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCAGGAGGCACTGCAgtgagtaatgaggcccaggtgtggtgcctcagggtggtcagggtagtccc Alignment from Pairagon CACACAGATGAAGAAGGTGATG-TTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGCA ccagcctttggattccgtctctaaaatgtctgataacttttcatctttagTACACAGATAAAGAAGGTGATGCTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCAGGAGGCACTGCAgtgagtaatgaggcccaggtgtggtgcctcagggtggtcagggtagtccc Alignment from Exonerate_protein2genome CACACAGATGAAGAAGGTGATG-TTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGCA ccagcctttggattccgtctctaaaatgtctgataacttttcatctttagTACACAGATAAAGAAGGTGATGCTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCAGGAGGCACTGCAgtgagtaatgaggcccaggtgtggtgcctcagggtggtcagggtagtccc Alignment from Exonerate_coding2genome CACACAGATGAAGAAGGTGATG-TTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGCA ccagcctttggattccgtctctaaaatgtctgataacttttcatctttagTACACAGATAAAGAAGGTGATGCTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCAGGAGGCACTGCAgtgagtaatgaggcccaggtgtggtgcctcagggtggtcagggtagtccc Alignment from GeneWise CACACAGATGAAGAAGGTGATG-TTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGCA ccagcctttggattccgtctctaaaatgtctgataacttttcatctttagTACACAGATAAAGAAGGTGATGCTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCAGGAGGCACTGCAgtgagtaatgaggcccaggtgtggtgcctcagggtggtcagggtagtccc #### Naa40_ID2074_6 --> 1 - 2 Original Alignment cTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATT-CAGATCCTGCAGCTCATGGCCAACag caggctcctttattgggtctaggcactcccagtgtctttggtattcccagcTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCCAGATCCTGCAGCTCATGGCCAACaggtacggagctattgcactaccgggggaaagaactcgccaaggaggtgggt Alignment from CESAR cTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATT-CAGATCCTGCAGCTCATGGCCAACag caggctcctttattgggtctaggcactcccagtgtctttggtattcccagcTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCCAGATCCTGCAGCTCATGGCCAACaggtacggagctattgcactaccgggggaaagaactcgccaaggaggtgggt Alignment from Spaln_aa2Genome CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATT-CAGATCCTGCAGCTCATGGCCAACAG caggctcctttattgggtctaggcactcccagtgtctttggtattcccagCTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTcCAGATCCTGCAGCTCATGGCCAACAGgtacggagctattgcactaccgggggaaagaactcgccaaggaggtgggt Alignment from Spaln_nt2Genome CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATT-CAGATCCTGCAGCTCATGGCCAACAG caggctcctttattgggtctaggcactcccagtgtctttggtattcccagCTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCCAGATCCTGCAGCTCATGGCCAACAGgtacggagctattgcactaccgggggaaagaactcgccaaggaggtgggt Alignment from Pairagon CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATT-CAGATCCTGCAGCTCATGGCCAACAG caggctcctttattgggtctaggcactcccagtgtctttggtattcccagCTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCCAGATCCTGCAGCTCATGGCCAACAGgtacggagctattgcactaccgggggaaagaactcgccaaggaggtgggt Alignment from Exonerate_protein2genome CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATT-CAGATCCTGCAGCTCATGGCCAACAG caggctcctttattgggtctaggcactcccagtgtctttggtattcccagCTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCCAGATCCTGCAGCTCATGGCCAACAGgtacggagctattgcactaccgggggaaagaactcgccaaggaggtgggt Alignment from Exonerate_coding2genome CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATT-CAGATCCTGCAGCTCATGGCCAACAG caggctcctttattgggtctaggcactcccagtgtctttggtattcccagCTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCCAGATCCTGCAGCTCATGGCCAACAGgtacggagctattgcactaccgggggaaagaactcgccaaggaggtgggt Alignment from GeneWise CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTC-ATTCAGATCCTGCAGCTCATGGCCAACAG caggctcctttattgggtctaggcactcccagtgtctttggtattcccagCTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCCAGATCCTGCAGCTCATGGCCAACAGgtacggagctattgcactaccgggggaaagaactcgccaaggaggtgggt #### Naaladl1_ID1443_2 --> 1 - 1 Original Alignment aGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGG-GACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCg agtcagaggcttccactgatacattttatcccttctcttttccctttcagaGAACTCTCCAAGGAACCACATGTGGCCACCAGCCCTCGGCGATGAAGCCCTGGTGCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAATGCAGAGCAGCCTAACAGCGTGGAGGTTggtacggtcaagtccaggaatatcaggggggggagggggtgagagcactgc Alignment from CESAR aGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGG-GACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCg agtcagaggcttccactgatacattttatcccttctcttttccctttcagaGAACTCTCCAAGGAACCACATGTGGCCACCAGCCCTCGGCGATGAAGCCCTGGTGCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAATGCAGAGCAGCCTAACAGCGTGGAGGTTggtacggtcaagtccaggaatatcaggggggggagggggtgagagcactgc Alignment from Spaln_aa2Genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGG-GACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG agtcagaggcttccactgatacattttatcccttctcttttccctttcagAGAACTCTCCAAGGAACCACATGTGGCCACCAGCCCTCGGcGATGAAGCCCTGGTGCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAATGCAGAGCAGCCTAACAGCGTGGAGGTTGgtacggtcaagtccaggaatatcaggggggggagggggtgagagcactgc Alignment from Spaln_nt2Genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGG-GACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG agtcagaggcttccactgatacattttatcccttctcttttccctttcagAGAACTCTCCAAGGAACCACATGTGGCCACCAGCCCTCGGCGATGAAGCCCTGGTGCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAATGCAGAGCAGCCTAACAGCGTGGAGGTTGgtacggtcaagtccaggaatatcaggggggggagggggtgagagcactgc Alignment from Pairagon AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGG-GACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG agtcagaggcttccactgatacattttatcccttctcttttccctttcagAGAACTCTCCAAGGAACCACATGTGGCCACCAGCCCTCGGCGATGAAGCCCTGGTGCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAATGCAGAGCAGCCTAACAGCGTGGAGGTTGgtacggtcaagtccaggaatatcaggggggggagggggtgagagcactgc Alignment from Exonerate_protein2genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGG-GACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG agtcagaggcttccactgatacattttatcccttctcttttccctttcagAGAACTCTCCAAGGAACCACATGTGGCCACCAGCCCTCGGCGATGAAGCCCTGGTGCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAATGCAGAGCAGCCTAACAGCGTGGAGGTTGgtacggtcaagtccaggaatatcaggggggggagggggtgagagcactgc Alignment from Exonerate_coding2genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGG-GACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG agtcagaggcttccactgatacattttatcccttctcttttccctttcagAGAACTCTCCAAGGAACCACATGTGGCCACCAGCCCTCGGCGATGAAGCCCTGGTGCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAATGCAGAGCAGCCTAACAGCGTGGAGGTTGgtacggtcaagtccaggaatatcaggggggggagggggtgagagcactgc Alignment from GeneWise AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCT-CGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG agtcagaggcttccactgatacattttatcccttctcttttccctttcagAGAACTCTCCAAGGAACCACATGTGGCCACCAGCCCTCGGCGATGAAGCCCTGGTGCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAATGCAGAGCAGCCTAACAGCGTGGAGGTTGgtacggtcaagtccaggaatatcaggggggggagggggtgagagcactgc #### Naaladl1_ID1458_17 --> 1 - 2 Original Alignment tCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAG-GAGAGGCACTACag ctggcacctgaactgctggcttgcagtgagtttccacatttgctttgtagtCCTCTGCAGGTACGAATGGTCAATGACCAGTTGATGCTCTTAGAGCGTGCATTCTTGAACCCAAGGGCTTTCCCAGAGCGAGAGGCACTACaggtaacactatgctgaaactctggggagggggggtggagcggtggccctct Alignment from CESAR tCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAG-GAGAGGCACTACag ctggcacctgaactgctggcttgcagtgagtttccacatttgctttgtagtCCTCTGCAGGTACGAATGGTCAATGACCAGTTGATGCTCTTAGAGCGTGCATTCTTGAACCCAAGGGCTTTCCCAGAGCGAGAGGCACTACaggtaacactatgctgaaactctggggagggggggtggagcggtggccctct Alignment from Spaln_aa2Genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAG-GAGAGGCACTACAG ctggcacctgaactgctggcttgcagtgagtttccacatttgctttgtagTCCTCTGCAGGTACGAATGGTCAATGACCAGTTGATGCTCTTAGAGCGTGCATTCTTGAACCCAAGGGCTTTCCCAGAGcGAGAGGCACTACAGgtaacactatgctgaaactctggggagggggggtggagcggtggccctct Alignment from Spaln_nt2Genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAG-GAGAGGCACTACAG ctggcacctgaactgctggcttgcagtgagtttccacatttgctttgtagTCCTCTGCAGGTACGAATGGTCAATGACCAGTTGATGCTCTTAGAGCGTGCATTCTTGAACCCAAGGGCTTTCCCAGAGCGAGAGGCACTACAGgtaacactatgctgaaactctggggagggggggtggagcggtggccctct Alignment from Pairagon TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAG-GAGAGGCACTACAG ctggcacctgaactgctggcttgcagtgagtttccacatttgctttgtagTCCTCTGCAGGTACGAATGGTCAATGACCAGTTGATGCTCTTAGAGCGTGCATTCTTGAACCCAAGGGCTTTCCCAGAGCGAGAGGCACTACAGgtaacactatgctgaaactctggggagggggggtggagcggtggccctct Alignment from Exonerate_protein2genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAG-GAGAGGCACTACAG ctggcacctgaactgctggcttgcagtgagtttccacatttgctttgtagTCCTCTGCAGGTACGAATGGTCAATGACCAGTTGATGCTCTTAGAGCGTGCATTCTTGAACCCAAGGGCTTTCCCAGAGCGAGAGGCACTACAGgtaacactatgctgaaactctggggagggggggtggagcggtggccctct Alignment from Exonerate_coding2genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAG-GAGAGGCACTACAG ctggcacctgaactgctggcttgcagtgagtttccacatttgctttgtagTCCTCTGCAGGTACGAATGGTCAATGACCAGTTGATGCTCTTAGAGCGTGCATTCTTGAACCCAAGGGCTTTCCCAGAGCGAGAGGCACTACAGgtaacactatgctgaaactctggggagggggggtggagcggtggccctct Alignment from GeneWise TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAG-GAGAGGCACTACAG ctggcacctgaactgctggcttgcagtgagtttccacatttgctttgtagTCCTCTGCAGGTACGAATGGTCAATGACCAGTTGATGCTCTTAGAGCGTGCATTCTTGAACCCAAGGGCTTTCCCAGAGCGAGAGGCACTACAGgtaacactatgctgaaactctggggagggggggtggagcggtggccctct #### Ndufs8_ID193_3 --> 2 - 1 Original Alignment agTATGTGAATAAGAAGGAACAGGAGTCT-GAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGGACAGAACTCATCCGAg cctgaacttgaaaagctttgccattaacgaatgttctgtttttccttcagagTATGTAAATAAGAAGGAACAGGAGTCTCGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGGACAGAACTAATCCGAggtgagcaccagtgaagagaggagaggggagagtcaggcatcaatggctgg Alignment from CESAR agTATGTGAATAAGAAGGAACAGGAGTCT-GAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGGACAGAACTCATCCGAg cctgaacttgaaaagctttgccattaacgaatgttctgtttttccttcagagTATGTAAATAAGAAGGAACAGGAGTCTCGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGGACAGAACTAATCCGAggtgagcaccagtgaagagaggagaggggagagtcaggcatcaatggctgg Alignment from Spaln_aa2Genome AGTATGTGAATAAGAAGGAACAGGAGTCT-GAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGGACAGAACTCATCCGAG cctgaacttgaaaagctttgccattaacgaatgttctgtttttccttcagAGTATGTAAATAAGAAGGAACAGGAGTCTcGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGGACAGAACTAATCCGAGgtgagcaccagtgaagagaggagaggggagagtcaggcatcaatggctgg Alignment from Spaln_nt2Genome AGTATGTGAATAAGAAGGAACAGGAGTCT-GAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGGACAGAACTCATCCGAG cctgaacttgaaaagctttgccattaacgaatgttctgtttttccttcagAGTATGTAAATAAGAAGGAACAGGAGTCTCGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGGACAGAACTAATCCGAGgtgagcaccagtgaagagaggagaggggagagtcaggcatcaatggctgg Alignment from Pairagon AGTATGTGAATAAGAAGGAACAGGAGTCT-GAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGGACAGAACTCATCCGAG cctgaacttgaaaagctttgccattaacgaatgttctgtttttccttcagAGTATGTAAATAAGAAGGAACAGGAGTCTCGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGGACAGAACTAATCCGAGgtgagcaccagtgaagagaggagaggggagagtcaggcatcaatggctgg Alignment from Exonerate_protein2genome AGTATGTGAATAAGAAGGAACAGGAGTCT-GAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGGACAGAACTCATCCGAG cctgaacttgaaaagctttgccattaacgaatgttctgtttttccttcagAGTATGTAAATAAGAAGGAACAGGAGTCTCGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGGACAGAACTAATCCGAGgtgagcaccagtgaagagaggagaggggagagtcaggcatcaatggctgg Alignment from Exonerate_coding2genome AGTATGTGAATAAGAAGGAACAGGAGTCT-GAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGGACAGAACTCATCCGAG cctgaacttgaaaagctttgccattaacgaatgttctgtttttccttcagAGTATGTAAATAAGAAGGAACAGGAGTCTCGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGGACAGAACTAATCCGAGgtgagcaccagtgaagagaggagaggggagagtcaggcatcaatggctgg Alignment from GeneWise AGTATGTGAATAAGAAGGAACAGGAG-TCTGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGGACAGAACTCATCCGAG cctgaacttgaaaagctttgccattaacgaatgttctgtttttccttcagAGTATGTAAATAAGAAGGAACAGGAGTCTCGAGGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGGACAGAACTAATCCGAGgtgagcaccagtgaagagaggagaggggagagtcaggcatcaatggctgg #### Ndufs8_ID194_2 --> 2 - 1 Original Alignment gaCATCTTAATGGACAAAGCCTTCAT-AGCAGCGCAGTGGCGGCAACGTACa ggttggggagcagagcttcctggtgtgactaaggtgcatcttttcttcaggaCATCTTAATGGACAAAGCCTTCATCAGCAGTGCAGTGGCGGCAACATACagtctgtagccaatattctgacttgagcttgtctgaccattgccacaccga Alignment from CESAR gaCATCTTAATGGACAAAGCCTTCAT-AGCAGCGCAGTGGCGGCAACGTACa ggttggggagcagagcttcctggtgtgactaaggtgcatcttttcttcaggaCATCTTAATGGACAAAGCCTTCATCAGCAGTGCAGTGGCGGCAACATACagtctgtagccaatattctgacttgagcttgtctgaccattgccacaccga Alignment from Spaln_aa2Genome GACATCTTAATGGACAAAGCCTTCAT-AGCAGCGCAGTGGCGGCAACGTACA ggttggggagcagagcttcctggtgtgactaaggtgcatcttttcttcagGACATCTTAATGGACAAAGCCTTCATcAGCAGTGCAGTGGCGGCAACATACAgtctgtagccaatattctgacttgagcttgtctgaccattgccacaccga Alignment from Spaln_nt2Genome GACATCTTAATGGACAAAGCCTTCAT-AGCAGCGCAGTGGCGGCAACGTACA ggttggggagcagagcttcctggtgtgactaaggtgcatcttttcttcagGACATCTTAATGGACAAAGCCTTCATCAGCAGTGCAGTGGCGGCAACATACAgtctgtagccaatattctgacttgagcttgtctgaccattgccacaccga Alignment from Pairagon GACATCTTAATGGACAAAGCCTTCAT-AGCAGCGCAGTGGCGGCAACGTACA ggttggggagcagagcttcctggtgtgactaaggtgcatcttttcttcagGACATCTTAATGGACAAAGCCTTCATCAGCAGTGCAGTGGCGGCAACATACAgtctgtagccaatattctgacttgagcttgtctgaccattgccacaccga Alignment from Exonerate_protein2genome GACATCTTAATGGACAAAGCCTTCAT-AGCAGCGCAGTGGCGGCAACGTACA ggttggggagcagagcttcctggtgtgactaaggtgcatcttttcttcagGACATCTTAATGGACAAAGCCTTCATCAGCAGTGCAGTGGCGGCAACATACAgtctgtagccaatattctgacttgagcttgtctgaccattgccacaccga Alignment from Exonerate_coding2genome GACATCTTAATGGACAAAGCCTTCAT-AGCAGCGCAGTGGCGGCAACGTACA ggttggggagcagagcttcctggtgtgactaaggtgcatcttttcttcagGACATCTTAATGGACAAAGCCTTCATCAGCAGTGCAGTGGCGGCAACATACAgtctgtagccaatattctgacttgagcttgtctgaccattgccacaccga Alignment from GeneWise GCAGCGCAGTGGCGGCAACGTACA TGGGGAGC---AGAGCTTCCTGGTgtgactaaggtgcatcttttcttcaggacatcttaatggacaaagccttcatcagcagtgcagtggcggcaacatacagtctgtagccaatattctgacttgagcttgtctgaccattgccacaccga #### Ndufv1_ID280_2 --> 0 - 2 Original Alignment ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGAC-CGGATCTTTACCAACCTGTATGGGCGCCATGACTGGag atccctcatggtcgctgagctctggaccttttttttttgtctttgcccagACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCCGGATCTTTACCAACCTGTATGGGCGCCATGACTGGaggtacttcagtgcccatggcctcagaacagaacttctccttcaaaaaatct Alignment from CESAR ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGAC-CGGATCTTTACCAACCTGTATGGGCGCCATGACTGGag atccctcatggtcgctgagctctggaccttttttttttgtctttgcccagACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCCGGATCTTTACCAACCTGTATGGGCGCCATGACTGGaggtacttcagtgcccatggcctcagaacagaacttctccttcaagttttgc Alignment from Spaln_aa2Genome ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGAC-CGGATCTTTACCAACCTGTATGGGCGCCATGACTGGAG atccctcatggtcgctgagctctggaccttttttttttgtctttgcccagACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACcCGGATCTTTACCAACCTGTATGGGCGCCATGACTGGAGgtacttcagtgcccatggcctcagaacagaacttctccttcaaaaaatct Alignment from Spaln_nt2Genome ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGA-CCGGATCTTTACCAACCTGTATGGGCGCCATGACTGGAG atccctcatggtcgctgagctctggaccttttttttttgtctttgcccagACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCCGGATCTTTACCAACCTGTATGGGCGCCATGACTGGAGgtacttcagtgcccatggcctcagaacagaacttctccttcaaaaaatct Alignment from Pairagon ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGA-CCGGATCTTTACCAACCTGTATGGGCGCCATGACTGGAG atccctcatggtcgctgagctctggaccttttttttttgtctttgcccagACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCCGGATCTTTACCAACCTGTATGGGCGCCATGACTGGAGgtacttcagtgcccatggcctcagaacagaacttctccttcaaaaaatct Alignment from Exonerate_protein2genome ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGAC-CGGATCTTTACCAACCTGTATGGGCGCCATGACTGGAG atccctcatggtcgctgagctctggaccttttttttttgtctttgcccagACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCCGGATCTTTACCAACCTGTATGGGCGCCATGACTGGAGgtacttcagtgcccatggcctcagaacagaacttctccttcaaaaaatct Alignment from Exonerate_coding2genome ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGAC-CGGATCTTTACCAACCTGTATGGGCGCCATGACTGGAG atccctcatggtcgctgagctctggaccttttttttttgtctttgcccagACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCCGGATCTTTACCAACCTGTATGGGCGCCATGACTGGAGgtacttcagtgcccatggcctcagaacagaacttctccttcaaaaaatct Alignment from GeneWise ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGAC-CGGATCTTTACCAACCTGTATGGGCGCCATGACTGGAG atccctcatggtcgctgagctctggaccttttttttttgtctttgcccagACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCCGGATCTTTACCAACCTGTATGGGCGCCATGACTGGAGgtacttcagtgcccatggcctcagaacagaacttctccttcaaaaaatct #### Nfkb2_ID9824_2 --> 0 - 1 Original Alignment GGCCTGGATGGCATCCCCGAATAT-GATGATTTTGAATTCAGCCCCTCCATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAg ggttggggggtcccctgattcagctccctgtctttctcacaaatccatagGGGCTGGATGGCATCCCCGAATATCGAGGATTTTGAATTCAGCCCATCTATTGTGGAGCCTAAGGATCCAGCCCCTGAGACAggtgagcaagtctttggcgtcacagtatctcagaacctagaggagattgag Alignment from CESAR GGCCTGGATGGCATCCCCGAATAT-GATGATTTTGAATTCAGCCCCTCCATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAg ggttggggggtcccctgattcagctccctgtctttctcacaaatccatagGGGCTGGATGGCATCCCCGAATATCGAGGATTTTGAATTCAGCCCATCTATTGTGGAGCCTAAGGATCCAGCCCCTGAGACAggtgagcaagtctttggcgtcacagtatctcagaacctagaggagattgag Alignment from Spaln_aa2Genome GGCCTGGATGGCATCCCCGAATAT-GATGATTTTGAATTCAGCCCCTCCATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAG ggttggggggtcccctgattcagctccctgtctttctcacaaatccatagGGGCTGGATGGCATCCCCGAATATcGAGGATTTTGAATTCAGCCCATCTATTGTGGAGCCTAAGGATCCAGCCCCTGAGACAGgtgagcaagtctttggcgtcacagtatctcagaacctagaggagattgag Alignment from Spaln_nt2Genome GGCCTGGATGGCATCCCCGAATAT-GATGATTTTGAATTCAGCCCCTCCATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAG ggttggggggtcccctgattcagctccctgtctttctcacaaatccatagGGGCTGGATGGCATCCCCGAATATCGAGGATTTTGAATTCAGCCCATCTATTGTGGAGCCTAAGGATCCAGCCCCTGAGACAGgtgagcaagtctttggcgtcacagtatctcagaacctagaggagattgag Alignment from Pairagon GGCCTGGATGGCATCCCCGAATAT-GATGATTTTGAATTCAGCCCCTCCATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAG ggttggggggtcccctgattcagctccctgtctttctcacaaatccatagGGGCTGGATGGCATCCCCGAATATCGAGGATTTTGAATTCAGCCCATCTATTGTGGAGCCTAAGGATCCAGCCCCTGAGACAGgtgagcaagtctttggcgtcacagtatctcagaacctagaggagattgag Alignment from Exonerate_protein2genome GGCCTGGATGGCATCCCCGAATAT-GATGATTTTGAATTCAGCCCCTCCATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAG ggttggggggtcccctgattcagctccctgtctttctcacaaatccatagGGGCTGGATGGCATCCCCGAATATCGAGGATTTTGAATTCAGCCCATCTATTGTGGAGCCTAAGGATCCAGCCCCTGAGACAGgtgagcaagtctttggcgtcacagtatctcagaacctagaggagattgag Alignment from Exonerate_coding2genome GGCCTGGATGGCATCCCCGAATAT-GATGATTTTGAATTCAGCCCCTCCATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAG ggttggggggtcccctgattcagctccctgtctttctcacaaatccatagGGGCTGGATGGCATCCCCGAATATCGAGGATTTTGAATTCAGCCCATCTATTGTGGAGCCTAAGGATCCAGCCCCTGAGACAGgtgagcaagtctttggcgtcacagtatctcagaacctagaggagattgag Alignment from GeneWise GACAATTGCTACGATCCAGGCCTGGATGGCATCCCCGAATATGATGATTTTGAATTCAGCCCCTCCATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAG tggggggtcccctgattcagctccctgtctttc---TCACAAATCCATAGGGGCTGGATGGCATCCCCGAATATCGAGGATTTTGAATTCAGCCCATCTATTGTGGAGCCTAAGGATCCAGCCCCTGAGACAGgtgagcaagtctttggcgtcacagtatctcagaacctagaggagattgag #### Nfkb2_ID9828_6 --> 1 - 1 Original Alignment aTTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATG-GAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAg agagcctcatggtcaaagtggacccaaagctttttcttggtcataagcagaTTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGCGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGATCCAAACCTCAGGGCCTTACAggtgagataacaaaaggtgttctgagaggtgttcctagaggagccaggaag Alignment from CESAR aTTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATG-GAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAg agagcctcatggtcaaagtggacccaaagctttttcttggtcataagcagaTTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGCGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGATCCAAACCTCAGGGCCTTACAggtgagataacaaaaggtgttctgagaggtgttcctagaggagccaggaag Alignment from Spaln_aa2Genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATG-GAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG agagcctcatggtcaaagtggacccaaagctttttcttggtcataagcagATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGcGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGATCCAAACCTCAGGGCCTTACAGgtgagataacaaaaggtgttctgagaggtgttcctagaggagccaggaag Alignment from Spaln_nt2Genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATG-GAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG agagcctcatggtcaaagtggacccaaagctttttcttggtcataagcagATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGCGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGATCCAAACCTCAGGGCCTTACAGgtgagataacaaaaggtgttctgagaggtgttcctagaggagccaggaag Alignment from Pairagon ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATG-GAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG agagcctcatggtcaaagtggacccaaagctttttcttggtcataagcagATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGCGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGATCCAAACCTCAGGGCCTTACAGgtgagataacaaaaggtgttctgagaggtgttcctagaggagccaggaag Alignment from Exonerate_protein2genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATG-GAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG agagcctcatggtcaaagtggacccaaagctttttcttggtcataagcagATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGCGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGATCCAAACCTCAGGGCCTTACAGgtgagataacaaaaggtgttctgagaggtgttcctagaggagccaggaag Alignment from Exonerate_coding2genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATG-GAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG agagcctcatggtcaaagtggacccaaagctttttcttggtcataagcagATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGCGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGATCCAAACCTCAGGGCCTTACAGgtgagataacaaaaggtgttctgagaggtgttcctagaggagccaggaag Alignment from GeneWise ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATG-GAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG agagcctcatggtcaaagtggacccaaagctttttcttggtcataagcagATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGCGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGATCCAAACCTCAGGGCCTTACAGgtgagataacaaaaggtgttctgagaggtgttcctagaggagccaggaag #### Nfkb2_ID9829_7 --> 2 - 1 Original Alignment agGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTC-CTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCa gagccaggaagagcagcccagagcttgccttcctcccttgcccttcctagagGCTGAGCGGCGGGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCCTTCGGGCTAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCagtgagcactctgcagggggccaagcacacattcccaacagtgcacttgag Alignment from CESAR agGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTC-CTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCa gagccaggaagagcagcccagagcttgccttcctcccttgcccttcctagagGCTGAGCGGCGGGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCCTTCGGGCTAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCagtgagcactctgcagggggccaagcacacattcccaacagtgcacttgag Alignment from Spaln_aa2Genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTC-CTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA gagccaggaagagcagcccagagcttgccttcctcccttgcccttcctagAGGCTGAGCGGCGGGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCcCTTCGGGCTAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCAgtgagcactctgcagggggccaagcacacattcccaacagtgcacttgag Alignment from Spaln_nt2Genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTT-CCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA gagccaggaagagcagcccagagcttgccttcctcccttgcccttcctagAGGCTGAGCGGCGGGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCCTTCGGGCTAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCAgtgagcactctgcagggggccaagcacacattcccaacagtgcacttgag Alignment from Pairagon AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTT-CCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA gagccaggaagagcagcccagagcttgccttcctcccttgcccttcctagAGGCTGAGCGGCGGGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCCTTCGGGCTAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCAgtgagcactctgcagggggccaagcacacattcccaacagtgcacttgag Alignment from Exonerate_protein2genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTC-CTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA gagccaggaagagcagcccagagcttgccttcctcccttgcccttcctagAGGCTGAGCGGCGGGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCCTTCGGGCTAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCAgtgagcactctgcagggggccaagcacacattcccaacagtgcacttgag Alignment from Exonerate_coding2genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTC-CTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA gagccaggaagagcagcccagagcttgccttcctcccttgcccttcctagAGGCTGAGCGGCGGGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCCTTCGGGCTAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCAgtgagcactctgcagggggccaagcacacattcccaacagtgcacttgag Alignment from GeneWise AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTC-CTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA gagccaggaagagcagcccagagcttgccttcctcccttgcccttcctagAGGCTGAGCGGCGGGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCCTTCGGGCTAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCAgtgagcactctgcagggggccaagcacacattcccaacagtgcacttgag #### Nfkb2_ID9830_8 --> 2 - 1 Original Alignment agTCTCCAGGGGCCTCGAAC-CTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAg caagcctgcaagccaatcaatgtgtccctttgtttgtttcttttggacagagTCTCCAGGGGCCTTGAACCCTGAAGATCTCCCGAATGGACAAAACAGCGGGTTCCGTGCGCGGTGGAGATGAAGTTTATTTGCTCTGTGAGAAGGTGCAAAAAggtaagtcagaagctccctgggactggctgtagaggtaatctggggatccc Alignment from CESAR agTCTCCAGGGGCCTCGAAC-CTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAg caagcctgcaagccaatcaatgtgtccctttgtttgtttcttttggacagagTCTCCAGGGGCCTTGAACCCTGAAGATCTCCCGAATGGACAAAACAGCGGGTTCCGTGCGCGGTGGAGATGAAGTTTATTTGCTCTGTGAGAAGGTGCAAAAAggtaagtcagaagctccctgggactggctgtagaggtaatctggggatccc Alignment from Spaln_aa2Genome AGTCTCCAGGGGCCTCGAAC-CTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG caagcctgcaagccaatcaatgtgtccctttgtttgtttcttttggacagAGTCTCCAGGGGCCTTGAACcCTGAAGATCTCCCGAATGGACAAAACAGCGGGTTCCGTGCGCGGTGGAGATGAAGTTTATTTGCTCTGTGAGAAGGTGCAAAAAGgtaagtcagaagctccctgggactggctgtagaggtaatctggggatccc Alignment from Spaln_nt2Genome AGTCTCCAGGGGCCTCGAACC-TGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG caagcctgcaagccaatcaatgtgtccctttgtttgtttcttttggacagAGTCTCCAGGGGCCTTGAACCCTGAAGATCTCCCGAATGGACAAAACAGCGGGTTCCGTGCGCGGTGGAGATGAAGTTTATTTGCTCTGTGAGAAGGTGCAAAAAGgtaagtcagaagctccctgggactggctgtagaggtaatctggggatccc Alignment from Pairagon AGTCTCCAGGGGCCTCGAA-CCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG caagcctgcaagccaatcaatgtgtccctttgtttgtttcttttggacagAGTCTCCAGGGGCCTTGAACCCTGAAGATCTCCCGAATGGACAAAACAGCGGGTTCCGTGCGCGGTGGAGATGAAGTTTATTTGCTCTGTGAGAAGGTGCAAAAAGgtaagtcagaagctccctgggactggctgtagaggtaatctggggatccc Alignment from Exonerate_protein2genome AGTCTCCAGGGGCCTCGAAC-CTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG caagcctgcaagccaatcaatgtgtccctttgtttgtttcttttggacagAGTCTCCAGGGGCCTTGAACCCTGAAGATCTCCCGAATGGACAAAACAGCGGGTTCCGTGCGCGGTGGAGATGAAGTTTATTTGCTCTGTGAGAAGGTGCAAAAAGgtaagtcagaagctccctgggactggctgtagaggtaatctggggatccc Alignment from Exonerate_coding2genome AGTCTCCAGGGGCCTCGAAC-CTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG caagcctgcaagccaatcaatgtgtccctttgtttgtttcttttggacagAGTCTCCAGGGGCCTTGAACCCTGAAGATCTCCCGAATGGACAAAACAGCGGGTTCCGTGCGCGGTGGAGATGAAGTTTATTTGCTCTGTGAGAAGGTGCAAAAAGgtaagtcagaagctccctgggactggctgtagaggtaatctggggatccc Alignment from GeneWise AGTCTCCAGGGGCC-TCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG caagcctgcaagccaatcaatgtgtccctttgtttgtttcttttggacagAGTCTCCAGGGGCCTTGAACCCTGAAGATCTCCCGAATGGACAAAACAGCGGGTTCCGTGCGCGGTGGAGATGAAGTTTATTTGCTCTGTGAGAAGGTGCAAAAAGgtaagtcagaagctccctgggactggctgtagaggtaatctggggatccc #### Nfkb2_ID9831_9 --> 2 - 0 Original Alignment acGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCC-ACAGACGTTCATAAACAG cagcagggctgcaagctctccctgtggcacccatttctcttctttttcagacGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCCACAGACGTTCATAAACAGgtaggtagggactagagcctgtcctggagacagaactacggagatacatt Alignment from CESAR acGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCC-ACAGACGTTCATAAACAG cagcagggctgcaagctctccctgtggcacccatttctcttctttttcagacGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCCACAGACGTTCATAAACAGgtaggtagggactagagcctgtcctggagacagaactacggagatacatt Alignment from Spaln_aa2Genome ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCT-CCCACAGACGTTCATAAACAG cagcagggctgcaagctctccctgtggcacccatttctcttctttttcagACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTcCCCACAGACGTTCATAAACAGgtaggtagggactagagcctgtcctggagacagaactacggagatacatt Alignment from Spaln_nt2Genome ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCC-CACAGACGTTCATAAACAG cagcagggctgcaagctctccctgtggcacccatttctcttctttttcagACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCCACAGACGTTCATAAACAGgtaggtagggactagagcctgtcctggagacagaactacggagatacatt Alignment from Pairagon ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCT-CCCACAGACGTTCATAAACAG cagcagggctgcaagctctccctgtggcacccatttctcttctttttcagACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCCACAGACGTTCATAAACAGgtaggtagggactagagcctgtcctggagacagaactacggagatacatt Alignment from Exonerate_protein2genome ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCT-CCCACAGACGTTCATAAACAG cagcagggctgcaagctctccctgtggcacccatttctcttctttttcagACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCCACAGACGTTCATAAACAGgtaggtagggactagagcctgtcctggagacagaactacggagatacatt Alignment from Exonerate_coding2genome ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCT-CCCACAGACGTTCATAAACAG cagcagggctgcaagctctccctgtggcacccatttctcttctttttcagACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCCACAGACGTTCATAAACAGgtaggtagggactagagcctgtcctggagacagaactacggagatacatt Alignment from GeneWise ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTC-TCTCCCACAGACGTTCATAAACAG cagcagggctgcaagctctccctgtggcacccatttctcttctttttcagACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTTGGGGACTTCTCTCCCCACAGACGTTCATAAACAGgtaggtagggactagagcctgtcctggagacagaactacggagatacatt #### Nfkb2_ID9832_10 --> 0 - 1 Original Alignment TATGCCATTGTGTTCCGGACACCG-CCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTACCCTCTGGTGGAAg tacggagatacattactggcactatgtttcacaccgccctctctatatagTATGCCATCGTGTTCCGGACACCACCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAGCGCAAGCGTGGGGGCGATGTCTCAGACTCCAAACAGTACACATATTACCCTTTGGTGGAAggtgaggcaggcttcagcattcccaaaagctagacggaatcaggccggcca Alignment from CESAR TATGCCATTGTGTTCCGGACACCG-CCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTACCCTCTGGTGGAAg tacggagatacattactggcactatgtttcacaccgccctctctatatagTATGCCATCGTGTTCCGGACACCACCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAGCGCAAGCGTGGGGGCGATGTCTCAGACTCCAAACAGTACACATATTACCCTTTGGTGGAAggtgaggcaggcttcagcattcccaaaagctagacggaatcaggccggcca Alignment from Spaln_aa2Genome TATGCCATTGTGTTCCGGACACCG-CCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTACCCTCTGGTGGAAG tacggagatacattactggcactatgtttcacaccgccctctctatatagTATGCCATCGTGTTCCGGACACCAcCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAGCGCAAGCGTGGGGGCGATGTCTCAGACTCCAAACAGTACACATATTACCCTTTGGTGGAAGgtgaggcaggcttcagcattcccaaaagctagacggaatcaggccggcca Alignment from Spaln_nt2Genome TATGCCATTGTGTTCCGGACACCGCCC-TATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTACCCTCTGGTGGAAG tacggagatacattactggcactatgtttcacaccgccctctctatatagTATGCCATCGTGTTCCGGACACCACCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAGCGCAAGCGTGGGGGCGATGTCTCAGACTCCAAACAGTACACATATTACCCTTTGGTGGAAGgtgaggcaggcttcagcattcccaaaagctagacggaatcaggccggcca Alignment from Pairagon TATGCCATTGTGTTCCGGACACCG-CCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTACCCTCTGGTGGAAG tacggagatacattactggcactatgtttcacaccgccctctctatatagTATGCCATCGTGTTCCGGACACCACCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAGCGCAAGCGTGGGGGCGATGTCTCAGACTCCAAACAGTACACATATTACCCTTTGGTGGAAGgtgaggcaggcttcagcattcccaaaagctagacggaatcaggccggcca Alignment from Exonerate_protein2genome TATGCCATTGTGTTCCGGACACCG-CCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTACCCTCTGGTGGAAG tacggagatacattactggcactatgtttcacaccgccctctctatatagTATGCCATCGTGTTCCGGACACCACCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAGCGCAAGCGTGGGGGCGATGTCTCAGACTCCAAACAGTACACATATTACCCTTTGGTGGAAGgtgaggcaggcttcagcattcccaaaagctagacggaatcaggccggcca Alignment from Exonerate_coding2genome TATGCCATTGTGTTCCGGACACCG-CCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTACCCTCTGGTGGAAG tacggagatacattactggcactatgtttcacaccgccctctctatatagTATGCCATCGTGTTCCGGACACCACCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAGCGCAAGCGTGGGGGCGATGTCTCAGACTCCAAACAGTACACATATTACCCTTTGGTGGAAGgtgaggcaggcttcagcattcccaaaagctagacggaatcaggccggcca Alignment from GeneWise TATGCCATTGTGTTCCGGACACCG-CCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTACCCTCTGGTGGAAG tacggagatacattactggcactatgtttcacaccgccctctctatatagTATGCCATCGTGTTCCGGACACCACCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTGTTCCTGCAGCTGAAGCGCAAGCGTGGGGGCGATGTCTCAGACTCCAAACAGTACACATATTACCCTTTGGTGGAAGgtgaggcaggcttcagcattcccaaaagctagacggaatcaggccggcca #### Nfkb2_ID9834_12 --> 2 - 1 Original Alignment gtGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTAC-AACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAg tctgggagagtcctggatggcacctcactgactaacctctttcctgacaggtGGCAGCCTTGGCTTTTTCTCCTCCTCCTTGGCCTATCAACCCCTACCAATCTGGTGCATCCCCAATGGGCTGTTATCTGGGTGGGGGAGGTGGAGCGCAGATGGCTGGTTCTAGACGGGATACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACACCCCCGGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACACTGCAGCGAggtaaggctcaggaatgctgggggttagcatgcacctgactctctcctctg Alignment from CESAR gtGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTAC-AACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAg tctgggagagtcctggatggcacctcactgactaacctctttcctgacaggtGGCAGCCTTGGCTTTTTCTCCTCCTCCTTGGCCTATCAACCCCTACCAATCTGGTGCATCCCCAATGGGCTGTTATCTGGGTGGGGGAGGTGGAGCGCAGATGGCTGGTTCTAGACGGGATACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACACCCCCGGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACACTGCAGCGAggtaaggctcaggaatgctgggggttagcatgcaccacagtgctgttctgc Alignment from Spaln_aa2Genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCC-TACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tctgggagagtcctggatggcacctcactgactaacctctttcctgacagGTGGCAGCCTTGGCTTTTTCTCCTCCTCCTTGGCCTATCAACCCcTACCAATCTGGTGCATCCCCAATGGGCTGTTATCTGGGTGGGGGAGGTGGAGCGCAGATGGCTGGTTCTAGACGGGATACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACACCCCCGGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACACTGCAGCGAGgtaaggctcaggaatgctgggggttagcatgcacctgactctctcctctg Alignment from Spaln_nt2Genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTA-CAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tctgggagagtcctggatggcacctcactgactaacctctttcctgacagGTGGCAGCCTTGGCTTTTTCTCCTCCTCCTTGGCCTATCAACCCCTACCAATCTGGTGCATCCCCAATGGGCTGTTATCTGGGTGGGGGAGGTGGAGCGCAGATGGCTGGTTCTAGACGGGATACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACACCCCCGGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACACTGCAGCGAGgtaaggctcaggaatgctgggggttagcatgcacctgactctctcctctg Alignment from Pairagon GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTA-CAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tctgggagagtcctggatggcacctcactgactaacctctttcctgacagGTGGCAGCCTTGGCTTTTTCTCCTCCTCCTTGGCCTATCAACCCCTACCAATCTGGTGCATCCCCAATGGGCTGTTATCTGGGTGGGGGAGGTGGAGCGCAGATGGCTGGTTCTAGACGGGATACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACACCCCCGGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACACTGCAGCGAGgtaaggctcaggaatgctgggggttagcatgcacctgactctctcctctg Alignment from Exonerate_protein2genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTAC-AACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tctgggagagtcctggatggcacctcactgactaacctctttcctgacagGTGGCAGCCTTGGCTTTTTCTCCTCCTCCTTGGCCTATCAACCCCTACCAATCTGGTGCATCCCCAATGGGCTGTTATCTGGGTGGGGGAGGTGGAGCGCAGATGGCTGGTTCTAGACGGGATACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACACCCCCGGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACACTGCAGCGAGgtaaggctcaggaatgctgggggttagcatgcacctgactctctcctctg Alignment from Exonerate_coding2genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTAC-AACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tctgggagagtcctggatggcacctcactgactaacctctttcctgacagGTGGCAGCCTTGGCTTTTTCTCCTCCTCCTTGGCCTATCAACCCCTACCAATCTGGTGCATCCCCAATGGGCTGTTATCTGGGTGGGGGAGGTGGAGCGCAGATGGCTGGTTCTAGACGGGATACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACACCCCCGGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACACTGCAGCGAGgtaaggctcaggaatgctgggggttagcatgcacctgactctctcctctg Alignment from GeneWise GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTAC-AACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tctgggagagtcctggatggcacctcactgactaacctctttcctgacagGTGGCAGCCTTGGCTTTTTCTCCTCCTCCTTGGCCTATCAACCCCTACCAATCTGGTGCATCCCCAATGGGCTGTTATCTGGGTGGGGGAGGTGGAGCGCAGATGGCTGGTTCTAGACGGGATACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACACCCCCGGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACACTGCAGCGAGgtaaggctcaggaatgctgggggttagcatgcacctgactctctcctctg #### Nfkb2_ID9836_14 --> 1 - 0 Original Alignment gCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATT-GAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG tctgggtgactggggttctgaagaacaacttacctatgtcctgtgtctagcCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTCGAGCAGATAGCCCACGTCATTTATCATGCTCAGTACCTCGGCGTAATAAACCTCACCAACCACCTGCACCAGgtgaggggaaggcttttttaagagattgaaagtaaggagtccaaagctgg Alignment from CESAR gCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATT-GAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG tctgggtgactggggttctgaagaacaacttacctatgtcctgtgtctagcCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTCGAGCAGATAGCCCACGTCATTTATCATGCTCAGTACCTCGGCGTAATAAACCTCACCAACCACCTGCACCAGgtgaggggaaggcttttttaagagattgaaagtaaggagtccaaagctgg Alignment from Spaln_aa2Genome GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATT-GAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG tctgggtgactggggttctgaagaacaacttacctatgtcctgtgtctagCCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTcGAGCAGATAGCCCACGTCATTTATCATGCTCAGTACCTCGGCGTAATAAACCTCACCAACCACCTGCACCAGgtgaggggaaggcttttttaagagattgaaagtaaggagtccaaagctgg Alignment from Spaln_nt2Genome GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATT-GAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG tctgggtgactggggttctgaagaacaacttacctatgtcctgtgtctagCCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTCGAGCAGATAGCCCACGTCATTTATCATGCTCAGTACCTCGGCGTAATAAACCTCACCAACCACCTGCACCAGgtgaggggaaggcttttttaagagattgaaagtaaggagtccaaagctgg Alignment from Pairagon GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATT-GAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG tctgggtgactggggttctgaagaacaacttacctatgtcctgtgtctagCCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTCGAGCAGATAGCCCACGTCATTTATCATGCTCAGTACCTCGGCGTAATAAACCTCACCAACCACCTGCACCAGgtgaggggaaggcttttttaagagattgaaagtaaggagtccaaagctgg Alignment from Exonerate_protein2genome GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATT-GAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG tctgggtgactggggttctgaagaacaacttacctatgtcctgtgtctagCCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTCGAGCAGATAGCCCACGTCATTTATCATGCTCAGTACCTCGGCGTAATAAACCTCACCAACCACCTGCACCAGgtgaggggaaggcttttttaagagattgaaagtaaggagtccaaagctgg Alignment from Exonerate_coding2genome GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATT-GAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG tctgggtgactggggttctgaagaacaacttacctatgtcctgtgtctagCCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTCGAGCAGATAGCCCACGTCATTTATCATGCTCAGTACCTCGGCGTAATAAACCTCACCAACCACCTGCACCAGgtgaggggaaggcttttttaagagattgaaagtaaggagtccaaagctgg Alignment from GeneWise GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTC-ATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTCACCAACCACCTGCACCAG tctgggtgactggggttctgaagaacaacttacctatgtcctgtgtctagCCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTCGAGCAGATAGCCCACGTCATTTATCATGCTCAGTACCTCGGCGTAATAAACCTCACCAACCACCTGCACCAGgtgaggggaaggcttttttaagagattgaaagtaaggagtccaaagctgg #### Nfkb2_ID9837_15 --> 0 - 1 Original Alignment ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCTCTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTG-CCCCAAATATTGCACATGCCTGATTTTGAGg gattgaaagtaaggagtccaaagctggcggagctcatactgtcttaccagACACCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATAGGCATGGAGACTCTGCCCTCCACTTGGCCCTCCGGGCAGGTGCAGCAGCCCCCGAGCTGTTGCAGGCACTGTTGCGCAGTGAAGCCCATGCTGTGCCCCCAAATA---CACATGCCTGATTTTGAGggtaagttgccaacatactcctgtactgggaacaaggatggggaccaagga Alignment from CESAR ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCTCTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTG-CCCCAAATATTGCACATGCCTGATTTTGAGg gattgaaagtaaggagtccaaagctggcggagctcatactgtcttaccagACACCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATAGGCATGGAGACTCTGCCCTCCACTTGGCCCTCCGGGCAGGTGCAGCAGCCCCCGAGCTGTTGCAGGCACTGTTGCGCAGTGAAGCCCATGCTGTGCCCCCAAATA---CACATGCCTGATTTTGAGggtaagttgccaacatactcctgtactgggaacaaggatggggaccaagga Alignment from Spaln_aa2Genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCTCTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG gattgaaagtaaggagtccaaagctggcggagctcatactgtcttaccagACACCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATAGGCATGGAGACTCTGCCCTCCACTTGGCCCTCCGGGCAGGTGCAGCAGCCCCCGAGCTGTTGCAGGCACTGTTGCGCAGTGAAGCCCATGCTGTGCCCCCAA--ATACACATGCCTGATTTTGAGGgtaagttgccaacatactcctgtactgggaacaaggatggggaccaagga Alignment from Spaln_nt2Genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCTCTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG gattgaaagtaaggagtccaaagctggcggagctcatactgtcttaccagACACCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATAGGCATGGAGACTCTGCCCTCCACTTGGCCCTCCGGGCAGGTGCAGCAGCCCCCGAGCTGTTGCAGGCACTGTTGCGCAGTGAAGCCCATGCTGTGCCCCCA--AATACACATGCCTGATTTTGAGGgtaagttgccaacatactcctgtactgggaacaaggatggggaccaagga Alignment from Pairagon ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCTCTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTG-CCCCAAATATTGCACATGCCTGATTTTGAGG gattgaaagtaaggagtccaaagctggcggagctcatactgtcttaccagACACCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATAGGCATGGAGACTCTGCCCTCCACTTGGCCCTCCGGGCAGGTGCAGCAGCCCCCGAGCTGTTGCAGGCACTGTTGCGCAGTGAAGCCCATGCTGTGCCCCCAAATA---CACATGCCTGATTTTGAGGgtaagttgccaacatactcctgtactgggaacaaggatggggaccaagga Alignment from Exonerate_protein2genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCTCTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTG-CCCCAAATATTGCACATGCCTGATTTTGAGG gattgaaagtaaggagtccaaagctggcggagctcatactgtcttaccagACACCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATAGGCATGGAGACTCTGCCCTCCACTTGGCCCTCCGGGCAGGTGCAGCAGCCCCCGAGCTGTTGCAGGCACTGTTGCGCAGTGAAGCCCATGCTGTGCCCCCAAATA---CACATGCCTGATTTTGAGGgtaagttgccaacatactcctgtactgggaacaaggatggggaccaagga Alignment from Exonerate_coding2genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCTCTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTG-CCCCAAATATTGCACATGCCTGATTTTGAGG gattgaaagtaaggagtccaaagctggcggagctcatactgtcttaccagACACCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATAGGCATGGAGACTCTGCCCTCCACTTGGCCCTCCGGGCAGGTGCAGCAGCCCCCGAGCTGTTGCAGGCACTGTTGCGCAGTGAAGCCCATGCTGTGCCCCCAAATA---CACATGCCTGATTTTGAGGgtaagttgccaacatactcctgtactgggaacaaggatggggaccaagga Alignment from GeneWise ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCTCTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG gattgaaagtaaggagtccaaagctggcggagctcatactgtcttaccagACACCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATAGGCATGGAGACTCTGCCCTCCACTTGGCCCTCCGGGCAGGTGCAGCAGCCCCCGAGCTGTTGCAGGCACTGTTGCGCAGTGAAGCCCATGCTGTGCCCCCAA--ATACACATGCCTGATTTTGAGGgtaagttgccaacatactcctgtactgggaacaaggatggggaccaagga #### Nfkb2_ID9838_16 --> 2 - 0 Original Alignment gaCTATACCCTGTACACCTGGCAGTCCATGCCCGA-AGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG ggaggccattttgaggatcaaagctgcatgtggatacctccttctttcaggaCTATACCCTGTACACCTGGCAGTCCATGCCCGACAGCCCTGAGTGTCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTACATCTAGCGACAGAGATGGAGGAGTTGGGGCTGGTCACCCATTTAGTCACCAAGgtgagtatgaggactatggacgggatggggcagactgtgggccgtcctcg Alignment from CESAR gaCTATACCCTGTACACCTGGCAGTCCATGCCCGA-AGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG ggaggccattttgaggatcaaagctgcatgtggatacctccttctttcaggaCTATACCCTGTACACCTGGCAGTCCATGCCCGACAGCCCTGAGTGTCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTACATCTAGCGACAGAGATGGAGGAGTTGGGGCTGGTCACCCATTTAGTCACCAAGgtgagtatgaggactatggacgggatggggcagactgtgggccgtcctcg Alignment from Spaln_aa2Genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGA-AGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG ggaggccattttgaggatcaaagctgcatgtggatacctccttctttcagGACTATACCCTGTACACCTGGCAGTCCATGCCCGAcAGCCCTGAGTGTCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTACATCTAGCGACAGAGATGGAGGAGTTGGGGCTGGTCACCCATTTAGTCACCAAGgtgagtatgaggactatggacgggatggggcagactgtgggccgtcctcg Alignment from Spaln_nt2Genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGA-AGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG ggaggccattttgaggatcaaagctgcatgtggatacctccttctttcagGACTATACCCTGTACACCTGGCAGTCCATGCCCGACAGCCCTGAGTGTCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTACATCTAGCGACAGAGATGGAGGAGTTGGGGCTGGTCACCCATTTAGTCACCAAGgtgagtatgaggactatggacgggatggggcagactgtgggccgtcctcg Alignment from Pairagon GACTATACCCTGTACACCTGGCAGTCCATGCCCGA-AGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG ggaggccattttgaggatcaaagctgcatgtggatacctccttctttcagGACTATACCCTGTACACCTGGCAGTCCATGCCCGACAGCCCTGAGTGTCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTACATCTAGCGACAGAGATGGAGGAGTTGGGGCTGGTCACCCATTTAGTCACCAAGgtgagtatgaggactatggacgggatggggcagactgtgggccgtcctcg Alignment from Exonerate_protein2genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGA-AGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG ggaggccattttgaggatcaaagctgcatgtggatacctccttctttcagGACTATACCCTGTACACCTGGCAGTCCATGCCCGACAGCCCTGAGTGTCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTACATCTAGCGACAGAGATGGAGGAGTTGGGGCTGGTCACCCATTTAGTCACCAAGgtgagtatgaggactatggacgggatggggcagactgtgggccgtcctcg Alignment from Exonerate_coding2genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGA-AGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG ggaggccattttgaggatcaaagctgcatgtggatacctccttctttcagGACTATACCCTGTACACCTGGCAGTCCATGCCCGACAGCCCTGAGTGTCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTACATCTAGCGACAGAGATGGAGGAGTTGGGGCTGGTCACCCATTTAGTCACCAAGgtgagtatgaggactatggacgggatggggcagactgtgggccgtcctcg Alignment from GeneWise GACTATACCCTGTACACCTGGCAGTCCATGCCCGA-AGCCCTGAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG ggaggccattttgaggatcaaagctgcatgtggatacctccttctttcagGACTATACCCTGTACACCTGGCAGTCCATGCCCGACAGCCCTGAGTGTCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTACATCTAGCGACAGAGATGGAGGAGTTGGGGCTGGTCACCCATTTAGTCACCAAGgtgagtatgaggactatggacgggatggggcagactgtgggccgtcctcg #### Nfkb2_ID9839_17 --> 0 - 1 Original Alignment CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACT-CGCCTCCTTCTAAAGGCTg gggcttggctagctggctggactatgctttattttctttattgtctacagCTCCATGCCAATGTGAATGCCCGGACCTTTGCTGGAAACACACCACTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCCGCCTCCTTCTAAAGGCTggtgagatttaccattggtgtatgaagggcaagggggggaagcgggaaccc Alignment from CESAR CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACT-CGCCTCCTTCTAAAGGCTg gggcttggctagctggctggactatgctttattttctttattgtctacagCTCCATGCCAATGTGAATGCCCGGACCTTTGCTGGAAACACACCACTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCCGCCTCCTTCTAAAGGCTggtgagatttaccattggtgtatgaagggcaagggggggaagcgggaaccc Alignment from Spaln_aa2Genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACT-CGCCTCCTTCTAAAGGCTG gggcttggctagctggctggactatgctttattttctttattgtctacagCTCCATGCCAATGTGAATGCCCGGACCTTTGCTGGAAACACACCACTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTcCGCCTCCTTCTAAAGGCTGgtgagatttaccattggtgtatgaagggcaagggggggaagcgggaaccc Alignment from Spaln_nt2Genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACT-CGCCTCCTTCTAAAGGCTG gggcttggctagctggctggactatgctttattttctttattgtctacagCTCCATGCCAATGTGAATGCCCGGACCTTTGCTGGAAACACACCACTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCCGCCTCCTTCTAAAGGCTGgtgagatttaccattggtgtatgaagggcaagggggggaagcgggaaccc Alignment from Pairagon CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACT-CGCCTCCTTCTAAAGGCTG gggcttggctagctggctggactatgctttattttctttattgtctacagCTCCATGCCAATGTGAATGCCCGGACCTTTGCTGGAAACACACCACTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCCGCCTCCTTCTAAAGGCTGgtgagatttaccattggtgtatgaagggcaagggggggaagcgggaaccc Alignment from Exonerate_protein2genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACT-CGCCTCCTTCTAAAGGCTG gggcttggctagctggctggactatgctttattttctttattgtctacagCTCCATGCCAATGTGAATGCCCGGACCTTTGCTGGAAACACACCACTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCCGCCTCCTTCTAAAGGCTGgtgagatttaccattggtgtatgaagggcaagggggggaagcgggaaccc Alignment from Exonerate_coding2genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACT-CGCCTCCTTCTAAAGGCTG gggcttggctagctggctggactatgctttattttctttattgtctacagCTCCATGCCAATGTGAATGCCCGGACCTTTGCTGGAAACACACCACTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCCGCCTCCTTCTAAAGGCTGgtgagatttaccattggtgtatgaagggcaagggggggaagcgggaaccc Alignment from GeneWise CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTT-ACTCGCCTCCTTCTAAAGGCTG gggcttggctagctggctggactatgctttattttctttattgtctacagCTCCATGCCAATGTGAATGCCCGGACCTTTGCTGGAAACACACCACTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCCGCCTCCTTCTAAAGGCTGgtgagatttaccattggtgtatgaagggcaagggggggaagcgggaaccc #### Nfkb2_ID9841_19 --> 0 - 1 Original Alignment GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCA-CCCAGCCCTGCAg agggaaagatgggcttaaggtccggatgcacattattgctttctatttagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCCAGCCCTGCAggtaaatttgcagtggtctcaggcacctcgttccagaggtgatatccttag Alignment from CESAR GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCA-CCCAGCCCTGCAg agggaaagatgggcttaaggtccggatgcacattattgctttctatttagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCCAGCCCTGCAggtaaatttgcagtggtctcaggcacctcgttccagaggtgatatccttag Alignment from Spaln_aa2Genome GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCT- agggaaagatgggcttaaggtccggatgcacattattgctttctatttagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCCAGCCCTgcaggtaaatttgcagtggtctcaggcacctcgttccagaggtgatatccttag Alignment from Spaln_nt2Genome GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCC-AGCCCTGCAG agggaaagatgggcttaaggtccggatgcacattattgctttctatttagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCCAGCCCTGCAGgtaaatttgcagtggtctcaggcacctcgttccagaggtgatatccttag Alignment from Pairagon GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCA-CCCAGCCCTGCAG agggaaagatgggcttaaggtccggatgcacattattgctttctatttagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCCAGCCCTGCAGgtaaatttgcagtggtctcaggcacctcgttccagaggtgatatccttag Alignment from Exonerate_protein2genome GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCA-CCCAGCCCTGCAG agggaaagatgggcttaaggtccggatgcacattattgctttctatttagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCCAGCCCTGCAGgtaaatttgcagtggtctcaggcacctcgttccagaggtgatatccttag Alignment from Exonerate_coding2genome GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCA-CCCAGCCCTGCAG agggaaagatgggcttaaggtccggatgcacattattgctttctatttagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCCAGCCCTGCAGgtaaatttgcagtggtctcaggcacctcgttccagaggtgatatccttag Alignment from GeneWise GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCC-AGCCCTGCAG agggaaagatgggcttaaggtccggatgcacattattgctttctatttagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCCAGCCCTGCAGgtaaatttgcagtggtctcaggcacctcgttccagaggtgatatccttag #### Nfkb2_ID9842_20 --> 2 - 0 Original Alignment ggCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGC-AGTCTCCTTCGTAGTTACAAG gtccctgcacacctattagctagatcaccacatttggatgttctttgaagggCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAACAACTGCTAGATGGTCCTGAAGCGCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAAACCCCGTCTCCCAGTGGCCAGTCTCCTTCGTAGTTACAAGgtgagtcagctataccctgccctgaagcctgaatccttggcctctcagag Alignment from CESAR ggCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGC-AGTCTCCTTCGTAGTTACAAG gtccctgcacacctattagctagatcaccacatttggatgttctttgaagggCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAACAACTGCTAGATGGTCCTGAAGCGCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAAACCCCGTCTCCCAGTGGCCAGTCTCCTTCGTAGTTACAAGgtgagtcagctataccctgccctgaagcctgaatccttggcctctcagag Alignment from Spaln_aa2Genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGC-AGTCTCCTTCGTAGTTACAAG gtccctgcacacctattagctagatcaccacatttggatgttctttgaagGGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAACAACTGCTAGATGGTCCTGAAGCGCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAAACCCCGTCTCCCAGTGGCcAGTCTCCTTCGTAGTTACAAGgtgagtcagctataccctgccctgaagcctgaatccttggcctctcagag Alignment from Spaln_nt2Genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGG-CAGTCTCCTTCGTAGTTACAAG gtccctgcacacctattagctagatcaccacatttggatgttctttgaagGGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAACAACTGCTAGATGGTCCTGAAGCGCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAAACCCCGTCTCCCAGTGGCCAGTCTCCTTCGTAGTTACAAGgtgagtcagctataccctgccctgaagcctgaatccttggcctctcagag Alignment from Pairagon GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGG-CAGTCTCCTTCGTAGTTACAAG gtccctgcacacctattagctagatcaccacatttggatgttctttgaagGGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAACAACTGCTAGATGGTCCTGAAGCGCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAAACCCCGTCTCCCAGTGGCCAGTCTCCTTCGTAGTTACAAGgtgagtcagctataccctgccctgaagcctgaatccttggcctctcagag Alignment from Exonerate_protein2genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGC-AGTCTCCTTCGTAGTTACAAG gtccctgcacacctattagctagatcaccacatttggatgttctttgaagGGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAACAACTGCTAGATGGTCCTGAAGCGCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAAACCCCGTCTCCCAGTGGCCAGTCTCCTTCGTAGTTACAAGgtgagtcagctataccctgccctgaagcctgaatccttggcctctcagag Alignment from Exonerate_coding2genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGC-AGTCTCCTTCGTAGTTACAAG gtccctgcacacctattagctagatcaccacatttggatgttctttgaagGGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAACAACTGCTAGATGGTCCTGAAGCGCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAAACCCCGTCTCCCAGTGGCCAGTCTCCTTCGTAGTTACAAGgtgagtcagctataccctgccctgaagcctgaatccttggcctctcagag Alignment from GeneWise --CCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGC-AGTCTCCTTCGTAGTTACAAG gtccctgcacacctattagctagatcaccacatttggatgttctttgaagGGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAACAACTGCTAGATGGTCCTGAAGCGCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAAACCCCGTCTCCCAGTGGCCAGTCTCCTTCGTAGTTACAAGgtgagtcagctataccctgccctgaagcctgaatccttggcctctcagag #### Noc3l_ID7659_16 --> 2 - 1 Original Alignment gtGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTC-TACAAGACACTGTTCACATTACATGCAg gtcactgaagactaacttaaccaaagtttgacttctcctttctgtaataggtGATGTTTTGAATATTGACCCGATGAAATTTTATACACATCTCCTTCCAGACACTGTTCACATTACATGCAggtagagcgtgcttggtacatatgtgtgtctgaaagcctgtttgatcataa Alignment from CESAR gtGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTC-TACAAGACACTGTTCACATTACATGCAg gtcactgaagactaacttaaccaaagtttgacttctcctttctgtaataggtGATGTTTTGAATATTGACCCGATGAAATTTTATACACATCTCCTTCCAGACACTGTTCACATTACATGCAggtagagcgtgcttggtacatatgtgtgtctgaaagcctgtttgatcataa Alignment from Spaln_aa2Genome GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTC-TACAAGACACTGTTCACATTACATGCAG gtcactgaagactaacttaaccaaagtttgacttctcctttctgtaatagGTGATGTTTTGAATATTGACCCGATGAAATTTTATACACATCTCcTTCCAGACACTGTTCACATTACATGCAGgtagagcgtgcttggtacatatgtgtgtctgaaagcctgtttgatcataa Alignment from Spaln_nt2Genome GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTC-TACAAGACACTGTTCACATTACATGCAG gtcactgaagactaacttaaccaaagtttgacttctcctttctgtaatagGTGATGTTTTGAATATTGACCCGATGAAATTTTATACACATCTCCTTCCAGACACTGTTCACATTACATGCAGgtagagcgtgcttggtacatatgtgtgtctgaaagcctgtttgatcataa Alignment from Pairagon GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCT-CTACAAGACACTGTTCACATTACATGCAG gtcactgaagactaacttaaccaaagtttgacttctcctttctgtaatagGTGATGTTTTGAATATTGACCCGATGAAATTTTATACACATCTCCTTCCAGACACTGTTCACATTACATGCAGgtagagcgtgcttggtacatatgtgtgtctgaaagcctgtttgatcataa Alignment from Exonerate_protein2genome GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTC-TACAAGACACTGTTCACATTACATGCAG gtcactgaagactaacttaaccaaagtttgacttctcctttctgtaatagGTGATGTTTTGAATATTGACCCGATGAAATTTTATACACATCTCCTTCCAGACACTGTTCACATTACATGCAGgtagagcgtgcttggtacatatgtgtgtctgaaagcctgtttgatcataa Alignment from Exonerate_coding2genome GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTC-TACAAGACACTGTTCACATTACATGCAG gtcactgaagactaacttaaccaaagtttgacttctcctttctgtaatagGTGATGTTTTGAATATTGACCCGATGAAATTTTATACACATCTCCTTCCAGACACTGTTCACATTACATGCAGgtagagcgtgcttggtacatatgtgtgtctgaaagcctgtttgatcataa Alignment from GeneWise GTGATGTTTTAAATATTGACCCGATGAAATTCTATACACATCTC-TACAAGACACTGTTCACATTACATGCAG gtcactgaagactaacttaaccaaagtttgacttctcctttctgtaatagGTGATGTTTTGAATATTGACCCGATGAAATTTTATACACATCTCCTTCCAGACACTGTTCACATTACATGCAGgtagagcgtgcttggtacatatgtgtgtctgaaagcctgtttgatcataa #### Noc3l_ID7660_15 --> 0 - 1 Original Alignment GAGCTAAGTTATCAAGAA-AGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAg agaaagcactctcatttgttttgtttctaaccttgtcactgtctcagcagGAGCTAAGTTATCAAGAACAGTCTCCATTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAggtatgatagtccatttggcttcctttcctttgtcactgaagactaactta Alignment from CESAR GAGCTAAGTTATCAAGAA-AGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAg agaaagcactctcatttgttttgtttctaaccttgtcactgtctcagcagGAGCTAAGTTATCAAGAACAGTCTCCATTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAggtatgatagtccatttggcttcctttcctttgtcactgaagactaactta Alignment from Spaln_aa2Genome GAGCTAAGTTATCAAGAA-AGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG agaaagcactctcatttgttttgtttctaaccttgtcactgtctcagcagGAGCTAAGTTATCAAGAAcAGTCTCCATTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAGgtatgatagtccatttggcttcctttcctttgtcactgaagactaactta Alignment from Spaln_nt2Genome GAGCTAAGTTATCAAGAA-AGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG agaaagcactctcatttgttttgtttctaaccttgtcactgtctcagcagGAGCTAAGTTATCAAGAACAGTCTCCATTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAGgtatgatagtccatttggcttcctttcctttgtcactgaagactaactta Alignment from Pairagon GAGCTAAGTTATCAAGAA-AGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG agaaagcactctcatttgttttgtttctaaccttgtcactgtctcagcagGAGCTAAGTTATCAAGAACAGTCTCCATTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAGgtatgatagtccatttggcttcctttcctttgtcactgaagactaactta Alignment from Exonerate_protein2genome GAGCTAAGTTATCAAGAA-AGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG agaaagcactctcatttgttttgtttctaaccttgtcactgtctcagcagGAGCTAAGTTATCAAGAACAGTCTCCATTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAGgtatgatagtccatttggcttcctttcctttgtcactgaagactaactta Alignment from Exonerate_coding2genome GAGCTAAGTTATCAAGAA-AGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAG agaaagcactctcatttgttttgtttctaaccttgtcactgtctcagcagGAGCTAAGTTATCAAGAACAGTCTCCATTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAGgtatgatagtccatttggcttcctttcctttgtcactgaagactaactta Alignment from GeneWise GAGCTAAGTTATCAAGAA-AGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAA--------------------------------------------------- agaaagcactctcatttgttttgtttctaaccttgtcactgtctcagcagGAGCTAAGTTATCAAGAACAGTCTCCATTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAAGGTATGATAGTCCATTTGGCTTCCTTTCCTTTGTCACTGAAGACTAACTTA #### Npas4_ID775_6 --> 2 - 2 Original Alignment tgGCTGAAAGTGGAGATATT-CAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCag gtgggtggattgatggaccttctaatcttgaccccttatgtctcccccagtgGCTGAAAGTGGAGATATTCCAGGCTGAAATGGTGGTGAGGCTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCGGAAGGGCCAGAAGGTCCTTTTACTGCCAATAACTACCCTATTaggtaaactgtaagacacaagatggtggagaggggaggggagctgagttcag Alignment from CESAR tgGCTGAAAGTGGAGATATT-CAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCag gtgggtggattgatggaccttctaatcttgaccccttatgtctcccccagtgGCTGAAAGTGGAGATATTCCAGGCTGAAATGGTGGTGAGGCTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCGGAAGGGCCAGAAGGTCCTTTTACTGCCAATAACTACCCTATTaggtaaactgtaagacacaagatggtggagaggggaggggagctgagttcag Alignment from Spaln_aa2Genome TGGCTGAAAGTGGAGATATT-CAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggattgatggaccttctaatcttgaccccttatgtctcccccagTGGCTGAAAGTGGAGATATTcCAGGCTGAAATGGTGGTGAGGCTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCGGAAGGGCCAGAAGGTCCTTTTACTGCCAATAACTACCCTATTAGgtaaactgtaagacacaagatggtggagaggggaggggagctgagttcag Alignment from Spaln_nt2Genome TGGCTGAAAGTGGAGATATT-CAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggattgatggaccttctaatcttgaccccttatgtctcccccagTGGCTGAAAGTGGAGATATTCCAGGCTGAAATGGTGGTGAGGCTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCGGAAGGGCCAGAAGGTCCTTTTACTGCCAATAACTACCCTATTAGgtaaactgtaagacacaagatggtggagaggggaggggagctgagttcag Alignment from Pairagon TGGCTGAAAGTGGAGATATT-CAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggattgatggaccttctaatcttgaccccttatgtctcccccagTGGCTGAAAGTGGAGATATTCCAGGCTGAAATGGTGGTGAGGCTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCGGAAGGGCCAGAAGGTCCTTTTACTGCCAATAACTACCCTATTAGgtaaactgtaagacacaagatggtggagaggggaggggagctgagttcag Alignment from Exonerate_protein2genome TGGCTGAAAGTGGAGATATT-CAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggattgatggaccttctaatcttgaccccttatgtctcccccagTGGCTGAAAGTGGAGATATTCCAGGCTGAAATGGTGGTGAGGCTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCGGAAGGGCCAGAAGGTCCTTTTACTGCCAATAACTACCCTATTAGgtaaactgtaagacacaagatggtggagaggggaggggagctgagttcag Alignment from Exonerate_coding2genome TGGCTGAAAGTGGAGATATT-CAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggattgatggaccttctaatcttgaccccttatgtctcccccagTGGCTGAAAGTGGAGATATTCCAGGCTGAAATGGTGGTGAGGCTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCGGAAGGGCCAGAAGGTCCTTTTACTGCCAATAACTACCCTATTAGgtaaactgtaagacacaagatggtggagaggggaggggagctgagttcag Alignment from GeneWise GTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggattgatggaccttctaatcttgaccccttatgtctcccccagtggctgaaagTGGAGATATTCCAGGCTGAAATGGTGGTGAGGCTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCGGAAGGGCCAGAAGGTCCTTTTACTGCCAATAACTACCCTATTAGgtaaactgtaagacacaagatggtggagaggggaggggagctgagttcag #### Npas4_ID776_5 --> 1 - 1 Original Alignment tGTCCTAATCTACCTG-GGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGt ttttgagtaaggtacacagaaagctgaccccattctgtccctgtcatcagtGTCCTAATCTACCTGCGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCTGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGtgtcagtgtccagggaggccatacatagcgcaggaagctgggagatagcat Alignment from CESAR tGTCCTAATCTACCTG-GGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGt ttttgagtaaggtacacagaaagctgaccccattctgtccctgtcatcagtGTCCTAATCTACCTGCGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCTGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGtgtcagtgtccagggaggccatacatagcgcaggaagctgggagatagcat Alignment from Spaln_aa2Genome TGTCCTAATCTACCTG-GGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGT ttttgagtaaggtacacagaaagctgaccccattctgtccctgtcatcagTGTCCTAATCTACCTGcGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCTGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGTgtcagtgtccagggaggccatacatagcgcaggaagctgggagatagcat Alignment from Spaln_nt2Genome TGTCCTAATCTACCTG-GGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGT ttttgagtaaggtacacagaaagctgaccccattctgtccctgtcatcagTGTCCTAATCTACCTGCGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCTGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGTgtcagtgtccagggaggccatacatagcgcaggaagctgggagatagcat Alignment from Pairagon TGTCCTAATCTACCTG-GGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGT ttttgagtaaggtacacagaaagctgaccccattctgtccctgtcatcagTGTCCTAATCTACCTGCGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCTGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGTgtcagtgtccagggaggccatacatagcgcaggaagctgggagatagcat Alignment from Exonerate_protein2genome TGTCCTAATCTACCTG-GGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGT ttttgagtaaggtacacagaaagctgaccccattctgtccctgtcatcagTGTCCTAATCTACCTGCGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCTGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGTgtcagtgtccagggaggccatacatagcgcaggaagctgggagatagcat Alignment from Exonerate_coding2genome TGTCCTAATCTACCTG-GGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGT ttttgagtaaggtacacagaaagctgaccccattctgtccctgtcatcagTGTCCTAATCTACCTGCGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCTGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGTgtcagtgtccagggaggccatacatagcgcaggaagctgggagatagcat Alignment from GeneWise TGTCCTAATCTAC-CTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGT ttttgagtaaggtacacagaaagctgaccccattctgtccctgtcatcagTGTCCTAATCTACCTGCGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGCTACACCCTGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGTgtcagtgtccagggaggccatacatagcgcaggaagctgggagatagcat #### Npas4_ID778_3 --> 0 - 1 Original Alignment GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCC-TCTGCTCTGGATGCTg ttgtggataccctcttggtatcttcactatttctgtttttctgaaaccagGTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCCTCCGCTCTGGATGCTggtgagaacatcacgaacaaagcctccaagaaatatgggactatgtgaaaa Alignment from CESAR GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCC-TCTGCTCTGGATGCTg ttgtggataccctcttggtatcttcactatttctgtttttctgaaaccagGTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCCTCCGCTCTGGATGCTggtgagaacatcacgaacaaagcctccaagaaatatgggactatgtgaaaa Alignment from Spaln_aa2Genome GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATG-CCCTCTGCTCTGGATGCTG ttgtggataccctcttggtatcttcactatttctgtttttctgaaaccagGTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGcCCCTCCGCTCTGGATGCTGgtgagaacatcacgaacaaagcctccaagaaatatgggactatgtgaaaa Alignment from Spaln_nt2Genome GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCC-TCTGCTCTGGATGCTG ttgtggataccctcttggtatcttcactatttctgtttttctgaaaccagGTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCCTCCGCTCTGGATGCTGgtgagaacatcacgaacaaagcctccaagaaatatgggactatgtgaaaa Alignment from Pairagon GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATG-CCCTCTGCTCTGGATGCTG ttgtggataccctcttggtatcttcactatttctgtttttctgaaaccagGTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCCTCCGCTCTGGATGCTGgtgagaacatcacgaacaaagcctccaagaaatatgggactatgtgaaaa Alignment from Exonerate_protein2genome GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATG-CCCTCTGCTCTGGATGCTG ttgtggataccctcttggtatcttcactatttctgtttttctgaaaccagGTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCCTCCGCTCTGGATGCTGgtgagaacatcacgaacaaagcctccaagaaatatgggactatgtgaaaa Alignment from Exonerate_coding2genome GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATG-CCCTCTGCTCTGGATGCTG ttgtggataccctcttggtatcttcactatttctgtttttctgaaaccagGTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCCTCCGCTCTGGATGCTGgtgagaacatcacgaacaaagcctccaagaaatatgggactatgtgaaaa Alignment from GeneWise GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCC-TCTGCTCTGGATGCTG ttgtggataccctcttggtatcttcactatttctgtttttctgaaaccagGTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCCTCCGCTCTGGATGCTGgtgagaacatcacgaacaaagcctccaagaaatatgggactatgtgaaaa #### Npm3_ID9576_4 --> 0 - 1 Original Alignment CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTG-AAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCg cttcaagtgagtgggccagcacggctcaaagcctggcgtctttcttctagCTCAGTGTGGACGATCTCCAACTCCAACCACCTGTCACCTTCCGCCTGCAAGTCTGGTTCTGGCCCAGTTCGGATC---------CATCAGATTggtaggaagagtgggtcctctactcccgacttgccccagtctcagatccta Alignment from CESAR CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTG-AAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCg cttcaagtgagtgggccagcacggctcaaagcctggcgtctttcttctagCTCAGTGTGGACGATCTCCAACTCCAACCACCTGTCACCTTCCGCCTGCAAGTCTGGTTCTGGCCCAGTTCGGATC---------CATCAGATTggtaggaagagtgggtcctctactcccgacttgccccagtctcagatccta Alignment from Spaln_aa2Genome CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTG-AAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG cttcaagtgagtgggccagcacggctcaaagcctggcgtctttcttctagCTCAGTGTGGACGATCTCCAACTCCAACCACCTGTCACCTTCCGCCTGcAAGTCTGGTTCTGGCCCAGTTCGGATC---------CATCAGATTGgtaggaagagtgggtcctctactcccgacttgccccagtctcagatccta Alignment from Spaln_nt2Genome CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTG-AAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG cttcaagtgagtgggccagcacggctcaaagcctggcgtctttcttctagCTCAGTGTGGACGATCTCCAACTCCAACCACCTGTCACCTTCCGCCTGCAAGTCTGGTTCTGGCCCAGTTCGGATC---------CATCAGATTGgtaggaagagtgggtcctctactcccgacttgccccagtctcagatccta Alignment from Pairagon CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTG-AAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG cttcaagtgagtgggccagcacggctcaaagcctggcgtctttcttctagCTCAGTGTGGACGATCTCCAACTCCAACCACCTGTCACCTTCCGCCTGCAAGTCTGGTTCTGGCCCAGTTCGGATC---------CATCAGATTGgtaggaagagtgggtcctctactcccgacttgccccagtctcagatccta Alignment from Exonerate_protein2genome CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTG-AAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG cttcaagtgagtgggccagcacggctcaaagcctggcgtctttcttctagCTCAGTGTGGACGATCTCCAACTCCAACCACCTGTCACCTTCCGCCTGCAAGTCTGGTTCTGGCCCAGTTCGGATCCATCAGATTGGTAGGAAGAgtgggtcctctactcccgacttgccccagtctcagatccta Alignment from Exonerate_coding2genome CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTG-AAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG cttcaagtgagtgggccagcacggctcaaagcctggcgtctttcttctagCTCAGTGTGGACGATCTCCAACTCCAACCACCTGTCACCTTCCGCCTGCAAGTCTGGTTCTGGCCCAGTTCGGATCCATCAGATTGGTAGGAAGAgtgggtcctctactcccgacttgccccagtctcagatccta Alignment from GeneWise CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGC-CTGAAGTCCGGTTCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG cttcaagtgagtgggccagcacggctcaaagcctggcgtctttcttctagCTCAGTGTGGACGATCTCCAACTCCAACCACCTGTCACCTTCCGCCTGCAAGTCTGGTTCTGGCCCAGTTCGGATC---------CATCAGATTGgtaggaagagtgggtcctctactcccgacttgccccagtctcagatccta #### Npm3_ID9577_3 --> 0 - 0 Original Alignment CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGG-TTGTCTTGCCAGCCCATG tggtgtcagccgaccctcactcgaggcaaatgactttgctgtctctgtagCTGTGCCTTACTGAGGGAGCCACGGACGAGTGTAATGTGGTAGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCGGTTCCTGTTGCCAACCTCAGGCTTGTCTTGCCAGCCCATGgtgagatggagccattcattcctctcggagcctggcgggactgataactt Alignment from CESAR CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGG-TTGTCTTGCCAGCCCATG tggtgtcagccgaccctcactcgaggcaaatgactttgctgtctctgtagCTGTGCCTTACTGAGGGAGCCACGGACGAGTGTAATGTGGTAGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCGGTTCCTGTTGCCAACCTCAGGCTTGTCTTGCCAGCCCATGgtgagatggagccattcattcctctcggagcctggcgggactgataactt Alignment from Spaln_aa2Genome CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGG-TTGTCTTGCCAGCCCATG tggtgtcagccgaccctcactcgaggcaaatgactttgctgtctctgtagCTGTGCCTTACTGAGGGAGCCACGGACGAGTGTAATGTGGTAGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCGGTTCCTGTTGCCAACCTCAGGcTTGTCTTGCCAGCCCATGgtgagatggagccattcattcctctcggagcctggcgggactgataactt Alignment from Spaln_nt2Genome CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGG-TTGTCTTGCCAGCCCATG tggtgtcagccgaccctcactcgaggcaaatgactttgctgtctctgtagCTGTGCCTTACTGAGGGAGCCACGGACGAGTGTAATGTGGTAGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCGGTTCCTGTTGCCAACCTCAGGCTTGTCTTGCCAGCCCATGgtgagatggagccattcattcctctcggagcctggcgggactgataactt Alignment from Pairagon CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGG-TTGTCTTGCCAGCCCATG tggtgtcagccgaccctcactcgaggcaaatgactttgctgtctctgtagCTGTGCCTTACTGAGGGAGCCACGGACGAGTGTAATGTGGTAGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCGGTTCCTGTTGCCAACCTCAGGCTTGTCTTGCCAGCCCATGgtgagatggagccattcattcctctcggagcctggcgggactgataactt Alignment from Exonerate_protein2genome CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGG-TTGTCTTGCCAGCCCATG tggtgtcagccgaccctcactcgaggcaaatgactttgctgtctctgtagCTGTGCCTTACTGAGGGAGCCACGGACGAGTGTAATGTGGTAGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCGGTTCCTGTTGCCAACCTCAGGCTTGTCTTGCCAGCCCATGgtgagatggagccattcattcctctcggagcctggcgggactgataactt Alignment from Exonerate_coding2genome CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGG-TTGTCTTGCCAGCCCATG tggtgtcagccgaccctcactcgaggcaaatgactttgctgtctctgtagCTGTGCCTTACTGAGGGAGCCACGGACGAGTGTAATGTGGTAGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCGGTTCCTGTTGCCAACCTCAGGCTTGTCTTGCCAGCCCATGgtgagatggagccattcattcctctcggagcctggcgggactgataactt Alignment from GeneWise CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTG tggtgtcagccgaccctcactcgaggcaaatgactttgctgtctctgtagCTGTGCCTTACTGAGGGAGCCACGGACGAGTGTAATGTGGTAGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCGGTTCCTGTTGCCAACCTCAGGCTTgtcttgccagcccatggtgagatggagccattcattcctctcggagcctggcgggactgataactt #### Npm3_ID9578_2 --> 2 - 0 Original Alignment gtTGTGAGCTCTCCGGCCACACCCGCTCCTTC-ACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggaatctctgctgcccgtgtccagggTGTGAGCTCTCTGGCCACACTCGCTCCTTCCACTTTCAAGGTTGAAGAGGAGGATGACACAGAGCACGTGCTGGCGTTGAACATGgtgagagccacagagggagttagagatatggggggcttgctggcagtccg Alignment from CESAR gtTGTGAGCTCTCCGGCCACACCCGCTCCTTC-ACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggaatctctgctgcccgtgtccagggTGTGAGCTCTCTGGCCACACTCGCTCCTTCCACTTTCAAGGTTGAAGAGGAGGATGACACAGAGCACGTGCTGGCGTTGAACATGgtgagagccacagagggagttagagatatggggggcttgctggcagtccg Alignment from Spaln_aa2Genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTC-ACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggaatctctgctgcccgtgtccagGGTGTGAGCTCTCTGGCCACACTCGCTCCTTCcACTTTCAAGGTTGAAGAGGAGGATGACACAGAGCACGTGCTGGCGTTGAACATGgtgagagccacagagggagttagagatatggggggcttgctggcagtccg Alignment from Spaln_nt2Genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTT-CACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggaatctctgctgcccgtgtccagGGTGTGAGCTCTCTGGCCACACTCGCTCCTTCCACTTTCAAGGTTGAAGAGGAGGATGACACAGAGCACGTGCTGGCGTTGAACATGgtgagagccacagagggagttagagatatggggggcttgctggcagtccg Alignment from Pairagon GTTGTGAGCTCTCCGGCCACACCCGCTCCTT-CACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggaatctctgctgcccgtgtccagGGTGTGAGCTCTCTGGCCACACTCGCTCCTTCCACTTTCAAGGTTGAAGAGGAGGATGACACAGAGCACGTGCTGGCGTTGAACATGgtgagagccacagagggagttagagatatggggggcttgctggcagtccg Alignment from Exonerate_protein2genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTC-ACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggaatctctgctgcccgtgtccagGGTGTGAGCTCTCTGGCCACACTCGCTCCTTCCACTTTCAAGGTTGAAGAGGAGGATGACACAGAGCACGTGCTGGCGTTGAACATGgtgagagccacagagggagttagagatatggggggcttgctggcagtccg Alignment from Exonerate_coding2genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTC-ACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggaatctctgctgcccgtgtccagGGTGTGAGCTCTCTGGCCACACTCGCTCCTTCCACTTTCAAGGTTGAAGAGGAGGATGACACAGAGCACGTGCTGGCGTTGAACATGgtgagagccacagagggagttagagatatggggggcttgctggcagtccg Alignment from GeneWise GTTGTGAGCTCTCCGGCCACACCCGCTCCTTC-ACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggaatctctgctgcccgtgtccagGGTGTGAGCTCTCTGGCCACACTCGCTCCTTCCACTTTCAAGGTTGAAGAGGAGGATGACACAGAGCACGTGCTGGCGTTGAACATGgtgagagccacagagggagttagagatatggggggcttgctggcagtccg #### Nt5c2_ID10040_13 --> 0 - 1 Original Alignment AAAACTGGAAAACTGAAAATTGGCACCTACACGGGCCCCCTG-CAGCACGGCATTGTCTACTCAGGGg tgggagagagcttggttaaatgaatttctgtctcacacacttctgactagAAAACTGGAAAACTGAAAATTGGCTCCTACACAGGCCCCCTGCCAGCAC---GTTGTCTACTCAGGGggtatgtgagctgtctgtctgcctccctttcttctggacgactctgcatgg Alignment from CESAR AAAACTGGAAAACTGAAAATTGGCACCTACACGGGCCCCCTG-CAGCACGGCATTGTCTACTCAGGGg tgggagagagcttggttaaatgaatttctgtctcacacacttctgactagAAAACTGGAAAACTGAAAATTGGCTCCTACACAGGCCCCCTGCCAGCAC---GTTGTCTACTCAGGGggtatgtgagctgtctgtctgcctccctttcttctggacgactctgcatgg Alignment from Spaln_aa2Genome AAAACTGGAAAACTGAAAATTGGCACCTACACGGGCCCCCTG-CAGCACGGCATTGTCTACTCAGGGG tgggagagagcttggttaaatgaatttctgtctcacacacttctgactagAAAACTGGAAAACTGAAAATTGGCTCCTACACAGGCCCCCTGcCAGCAC---GTTGTCTACTCAGGGGgtatgtgagctgtctgtctgcctccctttcttctggacgactctgcatgg Alignment from Spaln_nt2Genome AAAACTGGAAAACTGAAAATTGGCACCTACACGGGCCCCCTGC-AGCACGGCATTGTCTACTCAGGGG tgggagagagcttggttaaatgaatttctgtctcacacacttctgactagAAAACTGGAAAACTGAAAATTGGCTCCTACACAGGCCCCCTGCCAGCACG---TTGTCTACTCAGGGGgtatgtgagctgtctgtctgcctccctttcttctggacgactctgcatgg Alignment from Pairagon AAAACTGGAAAACTGAAAATTGGCACCTACACGGGCCCCCTG-CAGCACGGCATTGTCTACTCAGGGG tgggagagagcttggttaaatgaatttctgtctcacacacttctgactagAAAACTGGAAAACTGAAAATTGGCTCCTACACAGGCCCCCTGCCAGCACG---TTGTCTACTCAGGGGgtatgtgagctgtctgtctgcctccctttcttctggacgactctgcatgg Alignment from Exonerate_protein2genome AAAACTGGAAAACTGAAAATTGGCACCTACACGGGCCCCCTG-CAGCACGGCATTGTCTACTCAGGGG tgggagagagcttggttaaatgaatttctgtctcacacacttctgactagAAAACTGGAAAACTGAAAATTGGCTCCTACACAGGCCCCCTGCCAGCAC---GTTGTCTACTCAGGGGgtatgtgagctgtctgtctgcctccctttcttctggacgactctgcatgg Alignment from Exonerate_coding2genome AAAACTGGAAAACTGAAAATTGGCACCTACACGGGCCCCCTG-CAGCACGGCATTGTCTACTCAGGGG tgggagagagcttggttaaatgaatttctgtctcacacacttctgactagAAAACTGGAAAACTGAAAATTGGCTCCTACACAGGCCCCCTGCCAGCAC---GTTGTCTACTCAGGGGgtatgtgagctgtctgtctgcctccctttcttctggacgactctgcatgg Alignment from GeneWise AAAACTGGAAAACTGAAAATTGGCACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGG---------G tgggagagagcttggttaaatgaatttctgtctcacacacttctgactagAAAACTGGAAAACTGAAAATTGGCTCCTACACAGGCCCCCTGCCAGCACGTTGTCTACTCAGGGGGTATGTGAGCTgtctgtctgcctccctttcttctggacgactctgcatgg #### Nudt22_ID1971_4 --> 1 - 0 Original Alignment gTGCAGCTTGACTTCAGAG-GAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gtcctatatagtgcggatatctaccaagctgtctctagctacgttcctaggTGCAGCTTGACTTCAGAGCGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAGgtacggagttgagaccttctagttgtctggtcatggggtttggattacta Alignment from CESAR gTGCAGCTTGACTTCAGAG-GAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gtcctatatagtgcggatatctaccaagctgtctctagctacgttcctaggTGCAGCTTGACTTCAGAGCGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAGgtacggagttgagaccttctagttgtctggtcatggggtttggattacta Alignment from Spaln_aa2Genome GTGCAGCTTGACTTCAGAG-GAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gtcctatatagtgcggatatctaccaagctgtctctagctacgttcctagGTGCAGCTTGACTTCAGAGcGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAGgtacggagttgagaccttctagttgtctggtcatggggtttggattacta Alignment from Spaln_nt2Genome GTGCAGCTTGACTTCAGAG-GAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gtcctatatagtgcggatatctaccaagctgtctctagctacgttcctagGTGCAGCTTGACTTCAGAGCGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAGgtacggagttgagaccttctagttgtctggtcatggggtttggattacta Alignment from Pairagon GTGCAGCTTGACTTCAGAG-GAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gtcctatatagtgcggatatctaccaagctgtctctagctacgttcctagGTGCAGCTTGACTTCAGAGCGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAGgtacggagttgagaccttctagttgtctggtcatggggtttggattacta Alignment from Exonerate_protein2genome GTGCAGCTTGACTTCAGAG-GAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gtcctatatagtgcggatatctaccaagctgtctctagctacgttcctagGTGCAGCTTGACTTCAGAGCGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAGgtacggagttgagaccttctagttgtctggtcatggggtttggattacta Alignment from Exonerate_coding2genome GTGCAGCTTGACTTCAGAG-GAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gtcctatatagtgcggatatctaccaagctgtctctagctacgttcctagGTGCAGCTTGACTTCAGAGCGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAGgtacggagttgagaccttctagttgtctggtcatggggtttggattacta Alignment from GeneWise GTGCAGCTTGACTTCAGAG-GAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAG gtcctatatagtgcggatatctaccaagctgtctctagctacgttcctagGTGCAGCTTGACTTCAGAGCGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAATCATCTTTGTGGAGACACAGgtacggagttgagaccttctagttgtctggtcatggggtttggattacta #### Nudt8_ID267_2 --> 1 - 0 Original Alignment tTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGG-GGTGTCCTGCAGCCAGTGTATGACCGG aaactgcctcctgacagcccgtggtccccccctcttgtgcttgtcttcagtTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAGTAATACACACAGCCCTTCAGGAGACACAGGAGGAACTGGGCCTAGAGGTACCCAAGGAGCATGTCTGGCGGTGTCCTGCAGCCAGTGTATGACCGGgtgaggtatatataccctcatcctatcacaatcagtaaccctagtgtccg Alignment from CESAR tTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGG-GGTGTCCTGCAGCCAGTGTATGACCGG aaactgcctcctgacagcccgtggtccccccctcttgtgcttgtcttcagtTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAGTAATACACACAGCCCTTCAGGAGACACAGGAGGAACTGGGCCTAGAGGTACCCAAGGAGCATGTCTGGCGGTGTCCTGCAGCCAGTGTATGACCGGgtgaggtatatataccctcatcctatcacaatcagtaaccctagtgtccg Alignment from Spaln_aa2Genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGG-GGTGTCCTGCAGCCAGTGTATGACCGG aaactgcctcctgacagcccgtggtccccccctcttgtgcttgtcttcagTTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAGTAATACACACAGCCCTTCAGGAGACACAGGAGGAACTGGGCCTAGAGGTACCCAAGGAGCATGTCTGGcGGTGTCCTGCAGCCAGTGTATGACCGGgtgaggtatatataccctcatcctatcacaatcagtaaccctagtgtccg Alignment from Spaln_nt2Genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGG-GGTGTCCTGCAGCCAGTGTATGACCGG aaactgcctcctgacagcccgtggtccccccctcttgtgcttgtcttcagTTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAGTAATACACACAGCCCTTCAGGAGACACAGGAGGAACTGGGCCTAGAGGTACCCAAGGAGCATGTCTGGCGGTGTCCTGCAGCCAGTGTATGACCGGgtgaggtatatataccctcatcctatcacaatcagtaaccctagtgtccg Alignment from Pairagon TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGG-GGTGTCCTGCAGCCAGTGTATGACCGG aaactgcctcctgacagcccgtggtccccccctcttgtgcttgtcttcagTTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAGTAATACACACAGCCCTTCAGGAGACACAGGAGGAACTGGGCCTAGAGGTACCCAAGGAGCATGTCTGGCGGTGTCCTGCAGCCAGTGTATGACCGGgtgaggtatatataccctcatcctatcacaatcagtaaccctagtgtccg Alignment from Exonerate_protein2genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGG-GGTGTCCTGCAGCCAGTGTATGACCGG aaactgcctcctgacagcccgtggtccccccctcttgtgcttgtcttcagTTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAGTAATACACACAGCCCTTCAGGAGACACAGGAGGAACTGGGCCTAGAGGTACCCAAGGAGCATGTCTGGCGGTGTCCTGCAGCCAGTGTATGACCGGgtgaggtatatataccctcatcctatcacaatcagtaaccctagtgtccg Alignment from Exonerate_coding2genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGG-GGTGTCCTGCAGCCAGTGTATGACCGG aaactgcctcctgacagcccgtggtccccccctcttgtgcttgtcttcagTTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAGTAATACACACAGCCCTTCAGGAGACACAGGAGGAACTGGGCCTAGAGGTACCCAAGGAGCATGTCTGGCGGTGTCCTGCAGCCAGTGTATGACCGGgtgaggtatatataccctcatcctatcacaatcagtaaccctagtgtccg Alignment from GeneWise TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGG-GGTGTCCTGCAGCCAGTGTATGACCGG aaactgcctcctgacagcccgtggtccccccctcttgtgcttgtcttcagTTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAGTAATACACACAGCCCTTCAGGAGACACAGGAGGAACTGGGCCTAGAGGTACCCAAGGAGCATGTCTGGCGGTGTCCTGCAGCCAGTGTATGACCGGgtgaggtatatataccctcatcctatcacaatcagtaaccctagtgtccg #### Nudt8_ID268_3 --> 0 - 0 Original Alignment GAAAAGGCAACCATAGTCCCAGTACTTGCC-AACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ccatgattgcccaagacacccagattgcaaaatatttttctttgttttagGAAAAGGCAACCATAGTCCCGGTACTGGCCCAATGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAAgtaatgggtgactactgggaagatgggctgtcctaacaggggactcacag Alignment from CESAR GAAAAGGCAACCATAGTCCCAGTACTTGCC-AACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ccatgattgcccaagacacccagattgcaaaatatttttctttgttttagGAAAAGGCAACCATAGTCCCGGTACTGGCCCAATGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAAgtaatgggtgactactgggaagatgggctgtcctaacaggggactcacag Alignment from Spaln_aa2Genome GAAAAGGCAACCATAGTCCCAGTACTTGCC-AACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ccatgattgcccaagacacccagattgcaaaatatttttctttgttttagGAAAAGGCAACCATAGTCCCGGTACTGGCCcAATGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAAgtaatgggtgactactgggaagatgggctgtcctaacaggggactcacag Alignment from Spaln_nt2Genome GAAAAGGCAACCATAGTCCCAGTACTTGCC-AACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ccatgattgcccaagacacccagattgcaaaatatttttctttgttttagGAAAAGGCAACCATAGTCCCGGTACTGGCCCAATGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAAgtaatgggtgactactgggaagatgggctgtcctaacaggggactcacag Alignment from Pairagon GAAAAGGCAACCATAGTCCCAGTACTTG-CCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ccatgattgcccaagacacccagattgcaaaatatttttctttgttttagGAAAAGGCAACCATAGTCCCGGTACTGGCCCAATGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAAgtaatgggtgactactgggaagatgggctgtcctaacaggggactcacag Alignment from Exonerate_protein2genome GAAAAGGCAACCATAGTCCCAGTACTTGCC-AACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ccatgattgcccaagacacccagattgcaaaatatttttctttgttttagGAAAAGGCAACCATAGTCCCGGTACTGGCCCAATGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAAgtaatgggtgactactgggaagatgggctgtcctaacaggggactcacag Alignment from Exonerate_coding2genome GAAAAGGCAACCATAGTCCCAGTACTTGCC-AACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ccatgattgcccaagacacccagattgcaaaatatttttctttgttttagGAAAAGGCAACCATAGTCCCGGTACTGGCCCAATGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAAgtaatgggtgactactgggaagatgggctgtcctaacaggggactcacag Alignment from GeneWise GAAAAGGCAACCATAGTCCCAGTACTT-GCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ccatgattgcccaagacacccagattgcaaaatatttttctttgttttagGAAAAGGCAACCATAGTCCCGGTACTGGCCCAATGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAAgtaatgggtgactactgggaagatgggctgtcctaacaggggactcacag #### Nxf1_ID2346_6 --> 0 - 0 Original Alignment ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAAT-GAACTGAAGCCCGAACAAATAGAGCAGCTCAAG gtgattaggctgtcctcaattatgttcttcccccccacccccacccccagATATCTATCATCATTAATGCTTCTGCTCCACCCTACACTGTGCAGAATCGAACTGAAGCCCGAACAAATAGAGCAGCTCAAGgtaagtctggctcaagtggcatggtccagcaggctttcaacctccatcat Alignment from CESAR ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAAT-GAACTGAAGCCCGAACAAATAGAGCAGCTCAAG gtgattaggctgtcctcaattatgttcttcccccccacccccacccccagATATCTATCATCATTAATGCTTCTGCTCCACCCTACACTGTGCAGAATCGAACTGAAGCCCGAACAAATAGAGCAGCTCAAGgtaagtctggctcaagtggcatggtccagcaggctttcaacctccatcat Alignment from Spaln_aa2Genome ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAAT-GAACTGAAGCCCGAACAAATAGAGCAGCTCAAG gtgattaggctgtcctcaattatgttcttcccccccacccccacccccagATATCTATCATCATTAATGCTTCTGCTCCACCCTACACTGTGCAGAATcGAACTGAAGCCCGAACAAATAGAGCAGCTCAAGgtaagtctggctcaagtggcatggtccagcaggctttcaacctccatcat Alignment from Spaln_nt2Genome ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAAT-GAACTGAAGCCCGAACAAATAGAGCAGCTCAAG gtgattaggctgtcctcaattatgttcttcccccccacccccacccccagATATCTATCATCATTAATGCTTCTGCTCCACCCTACACTGTGCAGAATCGAACTGAAGCCCGAACAAATAGAGCAGCTCAAGgtaagtctggctcaagtggcatggtccagcaggctttcaacctccatcat Alignment from Pairagon ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAAT-GAACTGAAGCCCGAACAAATAGAGCAGCTCAAG gtgattaggctgtcctcaattatgttcttcccccccacccccacccccagATATCTATCATCATTAATGCTTCTGCTCCACCCTACACTGTGCAGAATCGAACTGAAGCCCGAACAAATAGAGCAGCTCAAGgtaagtctggctcaagtggcatggtccagcaggctttcaacctccatcat Alignment from Exonerate_protein2genome ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAAT-GAACTGAAGCCCGAACAAATAGAGCAGCTCAAG gtgattaggctgtcctcaattatgttcttcccccccacccccacccccagATATCTATCATCATTAATGCTTCTGCTCCACCCTACACTGTGCAGAATCGAACTGAAGCCCGAACAAATAGAGCAGCTCAAGgtaagtctggctcaagtggcatggtccagcaggctttcaacctccatcat Alignment from Exonerate_coding2genome ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAAT-GAACTGAAGCCCGAACAAATAGAGCAGCTCAAG gtgattaggctgtcctcaattatgttcttcccccccacccccacccccagATATCTATCATCATTAATGCTTCTGCTCCACCCTACACTGTGCAGAATCGAACTGAAGCCCGAACAAATAGAGCAGCTCAAGgtaagtctggctcaagtggcatggtccagcaggctttcaacctccatcat Alignment from GeneWise ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAAT-GAACTGAAGCCCGAACAAATAGAGCAGCTCAAG gtgattaggctgtcctcaattatgttcttcccccccacccccacccccagATATCTATCATCATTAATGCTTCTGCTCCACCCTACACTGTGCAGAATCGAACTGAAGCCCGAACAAATAGAGCAGCTCAAGgtaagtctggctcaagtggcatggtccagcaggctttcaacctccatcat #### Nxf1_ID2348_8 --> 2 - 0 Original Alignment atTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATG-GCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ctggtatgggcacgacctctaagacttctctccatttgaccactcaatagatTTGGTGGCTCAGAACATCGTTGTTGTTCTAAACCGCAGGAGCTGTATGCGCAGCCACCCTGCGGATCATCGAAGAGAACATTCCTGAGgtgagactctttctttttttaattttaatttaattaactagttgttagtt Alignment from CESAR atTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATG-GCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ctggtatgggcacgacctctaagacttctctccatttgaccactcaatagatTTGGTGGCTCAGAACATCGTTGTTGTTCTAAACCGCAGGAGCTGTATGCGCAGCCACCCTGCGGATCATCGAAGAGAACATTCCTGAGgtgagactctttctttttttaattttaatttaattaactagttgttagtt Alignment from Spaln_aa2Genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATG-GCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ctggtatgggcacgacctctaagacttctctccatttgaccactcaatagATTTGGTGGCTCAGAACATCGTTGTTGTTCTAAACCGCAGGAGCTGTATGcGCAGCCACCCTGCGGATCATCGAAGAGAACATTCCTGAGgtgagactctttctttttttaattttaatttaattaactagttgttagtt Alignment from Spaln_nt2Genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATG-GCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ctggtatgggcacgacctctaagacttctctccatttgaccactcaatagATTTGGTGGCTCAGAACATCGTTGTTGTTCTAAACCGCAGGAGCTGTATGCGCAGCCACCCTGCGGATCATCGAAGAGAACATTCCTGAGgtgagactctttctttttttaattttaatttaattaactagttgttagtt Alignment from Pairagon ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATG-GCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ctggtatgggcacgacctctaagacttctctccatttgaccactcaatagATTTGGTGGCTCAGAACATCGTTGTTGTTCTAAACCGCAGGAGCTGTATGCGCAGCCACCCTGCGGATCATCGAAGAGAACATTCCTGAGgtgagactctttctttttttaattttaatttaattaactagttgttagtt Alignment from Exonerate_protein2genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATG-GCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ctggtatgggcacgacctctaagacttctctccatttgaccactcaatagATTTGGTGGCTCAGAACATCGTTGTTGTTCTAAACCGCAGGAGCTGTATGCGCAGCCACCCTGCGGATCATCGAAGAGAACATTCCTGAGgtgagactctttctttttttaattttaatttaattaactagttgttagtt Alignment from Exonerate_coding2genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATG-GCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ctggtatgggcacgacctctaagacttctctccatttgaccactcaatagATTTGGTGGCTCAGAACATCGTTGTTGTTCTAAACCGCAGGAGCTGTATGCGCAGCCACCCTGCGGATCATCGAAGAGAACATTCCTGAGgtgagactctttctttttttaattttaatttaattaactagttgttagtt Alignment from GeneWise ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATG-GCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ctggtatgggcacgacctctaagacttctctccatttgaccactcaatagATTTGGTGGCTCAGAACATCGTTGTTGTTCTAAACCGCAGGAGCTGTATGCGCAGCCACCCTGCGGATCATCGAAGAGAACATTCCTGAGgtgagactctttctttttttaattttaatttaattaactagttgttagtt #### Nxf1_ID2349_9 --> 0 - 0 Original Alignment CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAG-CTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA gggtaaaatgtataggataggatgagatcttgctctgttttgtctttcagCTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAATGAAgtagggctgacatctagggtgcttttgttgttttaatagttaactggcta Alignment from CESAR CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAG-CTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA gggtaaaatgtataggataggatgagatcttgctctgttttgtctttcagCTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAATGAAgtagggctgacatctagggtgcttttgttgttttaatagttaactggcta Alignment from Spaln_aa2Genome CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAG-CTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA gggtaaaatgtataggataggatgagatcttgctctgttttgtctttcagCTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGcCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAATGAAgtagggctgacatctagggtgcttttgttgttttaatagttaactggcta Alignment from Spaln_nt2Genome CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAG-CTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA gggtaaaatgtataggataggatgagatcttgctctgttttgtctttcagCTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAATGAAgtagggctgacatctagggtgcttttgttgttttaatagttaactggcta Alignment from Pairagon CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAG-CTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA gggtaaaatgtataggataggatgagatcttgctctgttttgtctttcagCTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAATGAAgtagggctgacatctagggtgcttttgttgttttaatagttaactggcta Alignment from Exonerate_protein2genome CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAG-CTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA gggtaaaatgtataggataggatgagatcttgctctgttttgtctttcagCTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAATGAAgtagggctgacatctagggtgcttttgttgttttaatagttaactggcta Alignment from Exonerate_coding2genome CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAG-CTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA gggtaaaatgtataggataggatgagatcttgctctgttttgtctttcagCTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAATGAAgtagggctgacatctagggtgcttttgttgttttaatagttaactggcta Alignment from GeneWise CTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAG-CTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA gggtaaaatgtataggataggatgagatcttgctctgttttgtctttcagCTATTGTCTTTGAACTTGAGCAGCAACAGGCTATACAAGCCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAATGAAgtagggctgacatctagggtgcttttgttgttttaatagttaactggcta #### Nxf1_ID2352_12 --> 0 - 0 Original Alignment GATGGCCATGAGCTA-CCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG aaatccagtctttcttcagtttctcataacacatttttatttatttatagGATGGCCATGAGCTACCCCCCTCCAATTTCCTTTGACGTTGAAGCCCCTACAATGTTACCACCCTGCAAGgtcagaggtggggttagaattagaactgtgagaggagagaatattggtcc Alignment from CESAR GATGGCCATGAGCTA-CCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG aaatccagtctttcttcagtttctcataacacatttttatttatttatagGATGGCCATGAGCTACCCCCCTCCAATTTCCTTTGACGTTGAAGCCCCTACAATGTTACCACCCTGCAAGgtcagaggtggggttagaattagaactgtgagaggagagaatattggtcc Alignment from Spaln_aa2Genome GATGGCCATGAGCTACCCCCT-CCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG aaatccagtctttcttcagtttctcataacacatttttatttatttatagGATGGCCATGAGCTACCCCCCtCCAATTTCCTTTGACGTTGAAGCCCCTACAATGTTACCACCCTGCAAGgtcagaggtggggttagaattagaactgtgagaggagagaatattggtcc Alignment from Spaln_nt2Genome GATGGCCATGAGCTA-CCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG aaatccagtctttcttcagtttctcataacacatttttatttatttatagGATGGCCATGAGCTACCCCCCTCCAATTTCCTTTGACGTTGAAGCCCCTACAATGTTACCACCCTGCAAGgtcagaggtggggttagaattagaactgtgagaggagagaatattggtcc Alignment from Pairagon GATGGCCATGAGCTA-CCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG aaatccagtctttcttcagtttctcataacacatttttatttatttatagGATGGCCATGAGCTACCCCCCTCCAATTTCCTTTGACGTTGAAGCCCCTACAATGTTACCACCCTGCAAGgtcagaggtggggttagaattagaactgtgagaggagagaatattggtcc Alignment from Exonerate_protein2genome GATGGCCATGAGCTA-CCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG aaatccagtctttcttcagtttctcataacacatttttatttatttatagGATGGCCATGAGCTACCCCCCTCCAATTTCCTTTGACGTTGAAGCCCCTACAATGTTACCACCCTGCAAGgtcagaggtggggttagaattagaactgtgagaggagagaatattggtcc Alignment from Exonerate_coding2genome GATGGCCATGAGCTA-CCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG aaatccagtctttcttcagtttctcataacacatttttatttatttatagGATGGCCATGAGCTACCCCCCTCCAATTTCCTTTGACGTTGAAGCCCCTACAATGTTACCACCCTGCAAGgtcagaggtggggttagaattagaactgtgagaggagagaatattggtcc Alignment from GeneWise -------AGCGCCATTCGCGAACGATTTCCCAAGTTATTACGCCTGGATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG aaatccagTCTTTCTTCAGTTTCTCATAACACATTTTTATTTATTTATAGGATG---GCCATGAGCTACCCCCCTCCAATTTCCTTTGACGTTGAAGCCCCTACAATGTTACCACCCTGCAAGgtcagaggtggggttagaattagaactgtgagaggagagaatattggtcc #### Nxf1_ID2354_14 --> 1 - 2 Original Alignment gTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATT-CCTTACAACCCTCAGAATCCTGTCcg aatgactggcctatgcatacttattggtgcaaacatggctcttcttccaggTACTATGTCATTTGTGACTCAGGAGACCGTCAGGGTCTCCTGTATGCCTACCATGATGGTGCCTGTTGCTCACTAAGCATTCCCTTACAACCCTCAGAATCCTGTCaggtaagtgtcatatgttagaacctatccagaacccttacaaccctcagaat Alignment from CESAR gTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATT-CCTTACAACCCTCAGAATCCTGTCcg aatgactggcctatgcatacttattggtgcaaacatggctcttcttccaggTACTATGTCATTTGTGACTCAGGAGACCGTCAGGGTCTCCTGTATGCCTACCATGATGGTGCCTGTTGCTCACTAAGCATTCCCTTACAACCCTCAGAATCCTGTCaggtaagtgtcatatgttagaacctatccagaacccttacaaccctcagaat Alignment from Spaln_aa2Genome GTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATT-CCTTACAACCCTCAGAATCCTGTCCG aatgactggcctatgcatacttattggtgcaaacatggctcttcttccagGTACTATGTCATTTGTGACTCAGGAGACCGTCAGGGTCTCCTGTATGCCTACCATGATGGTGCCTGTTGCTCACTAAGCATTcCCTTACAACCCTCAGAATCCTGTCAGgtaagtgtcatatgttagaacctatccagaacccttacaaccctcagaat Alignment from Spaln_nt2Genome GTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTC-CTTACAACCCTCAGAATCCTGTCCG aatgactggcctatgcatacttattggtgcaaacatggctcttcttccagGTACTATGTCATTTGTGACTCAGGAGACCGTCAGGGTCTCCTGTATGCCTACCATGATGGTGCCTGTTGCTCACTAAGCATTCCCTTACAACCCTCAGAATCCTGTCAGgtaagtgtcatatgttagaacctatccagaacccttacaaccctcagaat Alignment from Pairagon GTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATT-CCTTACAACCCTCAGAATCCTGTCCG aatgactggcctatgcatacttattggtgcaaacatggctcttcttccagGTACTATGTCATTTGTGACTCAGGAGACCGTCAGGGTCTCCTGTATGCCTACCATGATGGTGCCTGTTGCTCACTAAGCATTCCCTTACAACCCTCAGAATCCTGTCAGgtaagtgtcatatgttagaacctatccagaacccttacaaccctcagaat Alignment from Exonerate_protein2genome GTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATT-CCTTACAACCCTCAGAATCCTGTCCG aatgactggcctatgcatacttattggtgcaaacatggctcttcttccagGTACTATGTCATTTGTGACTCAGGAGACCGTCAGGGTCTCCTGTATGCCTACCATGATGGTGCCTGTTGCTCACTAAGCATTCCCTTACAACCCTCAGAATCCTGTCAGgtaagtgtcatatgttagaacctatccagaacccttacaaccctcagaat Alignment from Exonerate_coding2genome GTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATT-CCTTACAACCCTCAGAATCCTGTCCG aatgactggcctatgcatacttattggtgcaaacatggctcttcttccagGTACTATGTCATTTGTGACTCAGGAGACCGTCAGGGTCTCCTGTATGCCTACCATGATGGTGCCTGTTGCTCACTAAGCATTCCCTTACAACCCTCAGAATCCTGTCAGgtaagtgtcatatgttagaacctatccagaacccttacaaccctcagaat Alignment from GeneWise ---------------------------------------------------TACTATGTAATTTATGACTCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGC-ATTCCTTACAACCCTCAGAATCCTGTCCG AATGACTGGCCTATGCATACTTATTGGTGCAAACATGGCTCTTCTTCCAGGTACTATGTCATTTGTGACTCAGGAGACCGTCAGGGTCTCCTGTATGCCTACCATGATGGTGCCTGTTGCTCACTAAGCATTCCCTTACAACCCTCAGAATCCTGTCAGgtaagtgtcatatgttagaacctatccagaacccttacaaccctcagaat #### Nxf1_ID2355_15 --> 1 - 1 Original Alignment aAAAAACTTAGCTGAATATGTC-AAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCa gattacaggccactgttctgactaccacatgtgtgggttgtatgccccagaAAAAACTTAGCTGAATATGTCCAAAGACTGTAGAAATGTAAAGAAGCTTAAAGAACCCagtgcccgcattgtgtgagcaatccaaatgggagacagtcagtagagccag Alignment from CESAR aAAAAACTTAGCTGAATATGTC-AAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCa gattacaggccactgttctgactaccacatgtgtgggttgtatgccccagaAAAAACTTAGCTGAATATGTCCAAAGACTGTAGAAATGTAAAGAAGCTTAAAGAACCCagtgcccgcattgtgtgagcaatccaaatgggagacagtcagtagagccag Alignment from Spaln_aa2Genome AAAAAACTTAGCTGAATATGTC-AAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCA gattacaggccactgttctgactaccacatgtgtgggttgtatgccccagAAAAAACTTAGCTGAATATGTCcAAAGACTGTAGAAATGTAAAGAAGCTTAAAGAACCCAgtgcccgcattgtgtgagcaatccaaatgggagacagtcagtagagccag Alignment from Spaln_nt2Genome AAAAAACTTAGCTGAATATGTCA-AAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCA gattacaggccactgttctgactaccacatgtgtgggttgtatgccccagAAAAAACTTAGCTGAATATGTCCAAAGACTGTAGAAATGTAAAGAAGCTTAAAGAACCCAgtgcccgcattgtgtgagcaatccaaatgggagacagtcagtagagccag Alignment from Pairagon AAAAAACTTAGCTGAATATGT-CAAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCA gattacaggccactgttctgactaccacatgtgtgggttgtatgccccagAAAAAACTTAGCTGAATATGTCCAAAGACTGTAGAAATGTAAAGAAGCTTAAAGAACCCAgtgcccgcattgtgtgagcaatccaaatgggagacagtcagtagagccag Alignment from Exonerate_protein2genome AAAAAACTTAGCTGAATATGTC-AAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCA gattacaggccactgttctgactaccacatgtgtgggttgtatgccccagAAAAAACTTAGCTGAATATGTCCAAAGACTGTAGAAATGTAAAGAAGCTTAAAGAACCCAgtgcccgcattgtgtgagcaatccaaatgggagacagtcagtagagccag Alignment from Exonerate_coding2genome AAAAAACTTAGCTGAATATGTC-AAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCA gattacaggccactgttctgactaccacatgtgtgggttgtatgccccagAAAAAACTTAGCTGAATATGTCCAAAGACTGTAGAAATGTAAAGAAGCTTAAAGAACCCAgtgcccgcattgtgtgagcaatccaaatgggagacagtcagtagagccag Alignment from GeneWise AAAAAACTTAGCTGAATAT-GTCAAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCA gattacaggccactgttctgactaccacatgtgtgggttgtatgccccagAAAAAACTTAGCTGAATATGTCCAAAGACTGTAGAAATGTAAAGAAGCTTAAAGAACCCAgtgcccgcattgtgtgagcaatccaaatgggagacagtcagtagagccag #### Nxf1_ID2356_16 --> 2 - 0 Original Alignment ccCAGCGGTTCCGACTCTTAAAGCATACA-CGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA agccaatgtagttgtaccctacccttgggtatacaatttactttttttagctCAGCGGTTCCGACTCTTAAAGCATACACCGTCTGAATGTTGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGATGTCAATGCCTTTGTGGTAGATATAAGTGCCCAAACAgtaaggtcctgttctctcctaacagaagcctagaggtggggtggatattg Alignment from CESAR ccCAGCGGTTCCGACTCTTAAAGCATACA-CGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA agccaatgtagttgtaccctacccttgggtatacaatttactttttttagctCAGCGGTTCCGACTCTTAAAGCATACACCGTCTGAATGTTGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGATGTCAATGCCTTTGTGGTAGATATAAGTGCCCAAACAgtaaggtcctgttctctcctaacagaagcctagaggtggggtggatattg Alignment from Spaln_aa2Genome CCCAGCGGTTCCGACTCTTAAAGCATACA-CGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA agccaatgtagttgtaccctacccttgggtatacaatttactttttttagCTCAGCGGTTCCGACTCTTAAAGCATACAcCGTCTGAATGTTGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGATGTCAATGCCTTTGTGGTAGATATAAGTGCCCAAACAgtaaggtcctgttctctcctaacagaagcctagaggtggggtggatattg Alignment from Spaln_nt2Genome CCCAGCGGTTCCGACTCTTAAAGCATACA-CGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA agccaatgtagttgtaccctacccttgggtatacaatttactttttttagCTCAGCGGTTCCGACTCTTAAAGCATACACCGTCTGAATGTTGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGATGTCAATGCCTTTGTGGTAGATATAAGTGCCCAAACAgtaaggtcctgttctctcctaacagaagcctagaggtggggtggatattg Alignment from Pairagon CCCAGCGGTTCCGACTCTTAAAGCATACA-CGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA agccaatgtagttgtaccctacccttgggtatacaatttactttttttagCTCAGCGGTTCCGACTCTTAAAGCATACACCGTCTGAATGTTGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGATGTCAATGCCTTTGTGGTAGATATAAGTGCCCAAACAgtaaggtcctgttctctcctaacagaagcctagaggtggggtggatattg Alignment from Exonerate_protein2genome CCCAGCGGTTCCGACTCTTAAAGCATACA-CGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA agccaatgtagttgtaccctacccttgggtatacaatttactttttttagCTCAGCGGTTCCGACTCTTAAAGCATACACCGTCTGAATGTTGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGATGTCAATGCCTTTGTGGTAGATATAAGTGCCCAAACAgtaaggtcctgttctctcctaacagaagcctagaggtggggtggatattg Alignment from Exonerate_coding2genome CCCAGCGGTTCCGACTCTTAAAGCATACA-CGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA agccaatgtagttgtaccctacccttgggtatacaatttactttttttagCTCAGCGGTTCCGACTCTTAAAGCATACACCGTCTGAATGTTGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGATGTCAATGCCTTTGTGGTAGATATAAGTGCCCAAACAgtaaggtcctgttctctcctaacagaagcctagaggtggggtggatattg Alignment from GeneWise CCCAGCGGTTCCGACTCTTAAAGCAT-ACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA agccaatgtagttgtaccctacccttgggtatacaatttactttttttagCTCAGCGGTTCCGACTCTTAAAGCATACACCGTCTGAATGTTGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGATGTCAATGCCTTTGTGGTAGATATAAGTGCCCAAACAgtaaggtcctgttctctcctaacagaagcctagaggtggggtggatattg #### Osbp_ID3346_5 --> 2 - 2 Original Alignment atCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAA-GATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACaa aggcattggtaaatataacatgaaaacactttctccatcttggttactagatCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAACGATGATGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACaagtgagtcctttgactgtttaagaaaacaaacacatatgtttacacgagag Alignment from CESAR atCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAA-GATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACaa aggcattggtaaatataacatgaaaacactttctccatcttggttactagatCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAACGATGATGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACaagtgagtcctttgactgtttaagaaaacaaacacatatgtttacacgagag Alignment from Spaln_aa2Genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAA-GATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA aggcattggtaaatataacatgaaaacactttctccatcttggttactagATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAcGATGATGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAAgtgagtcctttgactgtttaagaaaacaaacacatatgtttacacgagag Alignment from Spaln_nt2Genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAA-GATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA aggcattggtaaatataacatgaaaacactttctccatcttggttactagATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAACGATGATGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAAgtgagtcctttgactgtttaagaaaacaaacacatatgtttacacgagag Alignment from Pairagon ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAA-GATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA aggcattggtaaatataacatgaaaacactttctccatcttggttactagATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAACGATGATGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAAgtgagtcctttgactgtttaagaaaacaaacacatatgtttacacgagag Alignment from Exonerate_protein2genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAA-GATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA aggcattggtaaatataacatgaaaacactttctccatcttggttactagATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAACGATGATGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAAgtgagtcctttgactgtttaagaaaacaaacacatatgtttacacgagag Alignment from Exonerate_coding2genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAA-GATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA aggcattggtaaatataacatgaaaacactttctccatcttggttactagATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAACGATGATGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAAgtgagtcctttgactgtttaagaaaacaaacacatatgtttacacgagag Alignment from GeneWise GTAAAGATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGAT-GAAGATGACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA aggcattggtaaatataacatgaaaacactttctccatcttggttactagAT------CAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAACGATGATGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAAgtgagtcctttgactgtttaagaaaacaaacacatatgtttacacgagag #### Osbp_ID3347_6 --> 1 - 0 Original Alignment aCGTACTGGCAGCAATATCAGTGGGGCC-AGCAGTGATGTCAGCCTTGATGAACAG ttcagttctggtttttgttctaactctcaagaagtgcttttctgttttagaCGTACTGGCAGCAATATCAGTGGGCCCCAGCAGTGATGTCAGCCTTGATGAACAGgtaagtctctcttatttgcaagttgtcacattcaagggagtttgctttga Alignment from CESAR aCGTACTGGCAGCAATATCAGTGGG-GCCAGCAGTGATGTCAGCCTTGATGAACAG ttcagttctggtttttgttctaactctcaagaagtgcttttctgttttagaCGTACTGGCAGCAATATCAGTGGGCCCCAGCAGTGATGTCAGCCTTGATGAACAGgtaagtctctcttatttgcaagttgtcacattcaagggagtttgctttga Alignment from Spaln_aa2Genome ACGTACTGGCAGCAATATCAGTGGG-GCCAGCAGTGATGTCAGCCTTGATGAACAG ttcagttctggtttttgttctaactctcaagaagtgcttttctgttttagACGTACTGGCAGCAATATCAGTGGGcCCCAGCAGTGATGTCAGCCTTGATGAACAGgtaagtctctcttatttgcaagttgtcacattcaagggagtttgctttga Alignment from Spaln_nt2Genome ACGTACTGGCAGCAATATCAGT-GGGGCCAGCAGTGATGTCAGCCTTGATGAACAG ttcagttctggtttttgttctaactctcaagaagtgcttttctgttttagACGTACTGGCAGCAATATCAGTGGGCCCCAGCAGTGATGTCAGCCTTGATGAACAGgtaagtctctcttatttgcaagttgtcacattcaagggagtttgctttga Alignment from Pairagon ACGTACTGGCAGCAATATCAGTGGG-GCCAGCAGTGATGTCAGCCTTGATGAACAG ttcagttctggtttttgttctaactctcaagaagtgcttttctgttttagACGTACTGGCAGCAATATCAGTGGGCCCCAGCAGTGATGTCAGCCTTGATGAACAGgtaagtctctcttatttgcaagttgtcacattcaagggagtttgctttga Alignment from Exonerate_protein2genome ACGTACTGGCAGCAATATCAGT-GGGGCCAGCAGTGATGTCAGCCTTGATGAACAG ttcagttctggtttttgttctaactctcaagaagtgcttttctgttttagACGTACTGGCAGCAATATCAGTGGGCCCCAGCAGTGATGTCAGCCTTGATGAACAGgtaagtctctcttatttgcaagttgtcacattcaagggagtttgctttga Alignment from Exonerate_coding2genome ACGTACTGGCAGCAATATCAGT-GGGGCCAGCAGTGATGTCAGCCTTGATGAACAG ttcagttctggtttttgttctaactctcaagaagtgcttttctgttttagACGTACTGGCAGCAATATCAGTGGGCCCCAGCAGTGATGTCAGCCTTGATGAACAGgtaagtctctcttatttgcaagttgtcacattcaagggagtttgctttga Alignment from GeneWise ACGTACTGGCAGCAATATCAGTGGG-GCCAGCAGTGATGTCAGCCTTGATGAACAG ttcagttctggtttttgttctaactctcaagaagtgcttttctgttttagACGTACTGGCAGCAATATCAGTGGGCCCCAGCAGTGATGTCAGCCTTGATGAACAGgtaagtctctcttatttgcaagttgtcacattcaagggagtttgctttga #### Pacs1_ID877_17 --> 2 - 1 Original Alignment gtTCTCATCCAGTGGCCAAATAC-TTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAg ctctactctagccaccaacacttcactttgacactctactctccacccaggtTCTCATCCAGTGGCCAAATACCTTAGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGCCGCTCAGAGCCTCCAGTGTCAggtgatgacccctagtaggaacctccaagcagttaggttctagtccccagt Alignment from CESAR gtTCTCATCCAGTGGCCAAATAC-TTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAg ctctactctagccaccaacacttcactttgacactctactctccacccaggtTCTCATCCAGTGGCCAAATACCTTAGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGCCGCTCAGAGCCTCCAGTGTCAggtgatgacccctagtaggaacctccaagcagttaggttctagtccccagt Alignment from Spaln_aa2Genome GTTCTCATCCAGTGGCCAAATACTTG-GGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG ctctactctagccaccaacacttcactttgacactctactctccacccagGTTCTCATCCAGTGGCCAAATACCTTaGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGCCGCTCAGAGCCTCCAGTGTCAGgtgatgacccctagtaggaacctccaagcagttaggttctagtccccagt Alignment from Spaln_nt2Genome GTTCTCATCCAGTGGCCAAATA-CTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG ctctactctagccaccaacacttcactttgacactctactctccacccagGTTCTCATCCAGTGGCCAAATACCTTAGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGCCGCTCAGAGCCTCCAGTGTCAGgtgatgacccctagtaggaacctccaagcagttaggttctagtccccagt Alignment from Pairagon GTTCTCATCCAGTGGCCAAATA-CTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG ctctactctagccaccaacacttcactttgacactctactctccacccagGTTCTCATCCAGTGGCCAAATACCTTAGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGCCGCTCAGAGCCTCCAGTGTCAGgtgatgacccctagtaggaacctccaagcagttaggttctagtccccagt Alignment from Exonerate_protein2genome GTTCTCATCCAGTGGCCAAATAC-TTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG ctctactctagccaccaacacttcactttgacactctactctccacccagGTTCTCATCCAGTGGCCAAATACCTTAGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGCCGCTCAGAGCCTCCAGTGTCAGgtgatgacccctagtaggaacctccaagcagttaggttctagtccccagt Alignment from Exonerate_coding2genome GTTCTCATCCAGTGGCCAAATAC-TTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG ctctactctagccaccaacacttcactttgacactctactctccacccagGTTCTCATCCAGTGGCCAAATACCTTAGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGCCGCTCAGAGCCTCCAGTGTCAGgtgatgacccctagtaggaacctccaagcagttaggttctagtccccagt Alignment from GeneWise GTTCTCATCCAGTGGCCAAATAC-TTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG ctctactctagccaccaacacttcactttgacactctactctccacccagGTTCTCATCCAGTGGCCAAATACCTTAGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGCCGCTCAGAGCCTCCAGTGTCAGgtgatgacccctagtaggaacctccaagcagttaggttctagtccccagt #### Pacs1_ID878_16 --> 1 - 1 Original Alignment cTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTG-GGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAg gagcaggatgctgagacctaatatgatgcttcagtttcttctccttacagcTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCGGCTGTGCGGCAGCCAGAGCTACCTTAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCTCCTAggtaagtcctgaccattgaggagtcctctgttagcagacctggttcctaca Alignment from CESAR cTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTG-GGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAg gagcaggatgctgagacctaatatgatgcttcagtttcttctccttacagcTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCGGCTGTGCGGCAGCCAGAGCTACCTTAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCTCCTAggtaagtcctgaccattgaggagtcctctgttagcagacctggttcctaca Alignment from Spaln_aa2Genome CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTG-GGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG gagcaggatgctgagacctaatatgatgcttcagtttcttctccttacagCTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCGGCTGTGcGGCAGCCAGAGCTACCTTAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCTCCTAGgtaagtcctgaccattgaggagtcctctgttagcagacctggttcctaca Alignment from Spaln_nt2Genome CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTG-GGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG gagcaggatgctgagacctaatatgatgcttcagtttcttctccttacagCTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCGGCTGTGCGGCAGCCAGAGCTACCTTAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCTCCTAGgtaagtcctgaccattgaggagtcctctgttagcagacctggttcctaca Alignment from Pairagon CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTG-GGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG gagcaggatgctgagacctaatatgatgcttcagtttcttctccttacagCTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCGGCTGTGCGGCAGCCAGAGCTACCTTAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCTCCTAGgtaagtcctgaccattgaggagtcctctgttagcagacctggttcctaca Alignment from Exonerate_protein2genome CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTG-GGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG gagcaggatgctgagacctaatatgatgcttcagtttcttctccttacagCTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCGGCTGTGCGGCAGCCAGAGCTACCTTAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCTCCTAGgtaagtcctgaccattgaggagtcctctgttagcagacctggttcctaca Alignment from Exonerate_coding2genome CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCTGTG-GGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG gagcaggatgctgagacctaatatgatgcttcagtttcttctccttacagCTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCGGCTGTGCGGCAGCCAGAGCTACCTTAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCTCCTAGgtaagtcctgaccattgaggagtcctctgttagcagacctggttcctaca Alignment from GeneWise CTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCAGCT-GTGGGCAGCCAGAGCTACCTGAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCCCCTAG gagcaggatgctgagacctaatatgatgcttcagtttcttctccttacagCTGCAACTGCAACTCATCCATGCCGAGGCCGGTCAAGGTGGCGGCTGTGCGGCAGCCAGAGCTACCTTAGCTCCATCCTCCGTTTTTTTGTCAAGTCCCTTGCCAGCAAGACCCCAGACTGGCTGGGTTACATGCGCTTCCTCATCATTCTCCTAGgtaagtcctgaccattgaggagtcctctgttagcagacctggttcctaca #### Patl1_ID3316_4 --> 0 - 0 Original Alignment CCTCAACCAGGAAGTCTGAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATC-CGTGGACCACTACTTGCTCAG tcagccacaccattctagacactgtgtaattattactaattattactcagCCTCAACCAGGAAGTCTAAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCCGTGGACCACTACTTGCTCAGgtaagtaacattgctctttatgtagaaagctcttgttttcattctgttct Alignment from CESAR CCTCAACCAGGAAGTCTGAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATC-CGTGGACCACTACTTGCTCAG tcagccacaccattctagacactgtgtaattattactaattattactcagCCTCAACCAGGAAGTCTAAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCCGTGGACCACTACTTGCTCAGgtaagtaacattgctctttatgtagaaagctcttgttttcattctgttct Alignment from Spaln_aa2Genome CCTCAACCAGGAAGTCTGAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATC-CGTGGACCACTACTTGCTCAG tcagccacaccattctagacactgtgtaattattactaattattactcagCCTCAACCAGGAAGTCTAAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCcCGTGGACCACTACTTGCTCAGgtaagtaacattgctctttatgtagaaagctcttgttttcattctgttct Alignment from Spaln_nt2Genome CCTCAACCAGGAAGTCTGAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATC-CGTGGACCACTACTTGCTCAG tcagccacaccattctagacactgtgtaattattactaattattactcagCCTCAACCAGGAAGTCTAAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCCGTGGACCACTACTTGCTCAGgtaagtaacattgctctttatgtagaaagctcttgttttcattctgttct Alignment from Pairagon CCTCAACCAGGAAGTCTGAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAAT-CCGTGGACCACTACTTGCTCAG tcagccacaccattctagacactgtgtaattattactaattattactcagCCTCAACCAGGAAGTCTAAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCCGTGGACCACTACTTGCTCAGgtaagtaacattgctctttatgtagaaagctcttgttttcattctgttct Alignment from Exonerate_protein2genome CCTCAACCAGGAAGTCTGAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATC-CGTGGACCACTACTTGCTCAG tcagccacaccattctagacactgtgtaattattactaattattactcagCCTCAACCAGGAAGTCTAAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCCGTGGACCACTACTTGCTCAGgtaagtaacattgctctttatgtagaaagctcttgttttcattctgttct Alignment from Exonerate_coding2genome CCTCAACCAGGAAGTCTGAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATC-CGTGGACCACTACTTGCTCAG tcagccacaccattctagacactgtgtaattattactaattattactcagCCTCAACCAGGAAGTCTAAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCCGTGGACCACTACTTGCTCAGgtaagtaacattgctctttatgtagaaagctcttgttttcattctgttct Alignment from GeneWise CCTCAACCAGGAAGTCTGAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGA-ATCCGTGGACCACTACTTGCTCAG tcagccacaccattctagacactgtgtaattattactaattattactcagCCTCAACCAGGAAGTCTAAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCCGTGGACCACTACTTGCTCAGgtaagtaacattgctctttatgtagaaagctcttgttttcattctgttct #### Pcnxl3_ID1160_33 --> 1 - 1 Original Alignment aCTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGC-GGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAg cgcaatgcctcgccatggacccctcataataatctgttttttatcttcagaCTCCATAAGGGCTGTGGCGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCGGATTGTGGTGGGGGTGGTCGGCCTGGCCTCCCTCAGCAATCATCCACCCTTGGCACATCCTACGCCTGAAAATGCAGCAggtgagggcaaagcttgattgagcctgtgggtgagacagcaccccagccgc Alignment from CESAR aCTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGC-GGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAg cgcaatgcctcgccatggacccctcataataatctgttttttatcttcagaCTCCATAAGGGCTGTGGCGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCGGATTGTGGTGGGGGTGGTCGGCCTGGCCTCCCTCAGCAATCATCCACCCTTGGCACATCCTACGCCTGAAAATGCAGCAggtgagggcaaagcttgattgagcctgtgggtgagacagcaccccagccgc Alignment from Spaln_aa2Genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGC-GGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG cgcaatgcctcgccatggacccctcataataatctgttttttatcttcagACTCCATAAGGGCTGTGGCGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCGGATTGTGGTGGGGGTGGTcGGCCTGGCCTCCCTCAGCAATCATCCACCCTTGGCACATCCTACGCCTGAAAATGCAGCAGgtgagggcaaagcttgattgagcctgtgggtgagacagcaccccagccgc Alignment from Spaln_nt2Genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGT-GGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG cgcaatgcctcgccatggacccctcataataatctgttttttatcttcagACTCCATAAGGGCTGTGGCGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCGGATTGTGGTGGGGGTGGTCGGCCTGGCCTCCCTCAGCAATCATCCACCCTTGGCACATCCTACGCCTGAAAATGCAGCAGgtgagggcaaagcttgattgagcctgtgggtgagacagcaccccagccgc Alignment from Pairagon ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGG-CGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG cgcaatgcctcgccatggacccctcataataatctgttttttatcttcagACTCCATAAGGGCTGTGGCGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCGGATTGTGGTGGGGGTGGTCGGCCTGGCCTCCCTCAGCAATCATCCACCCTTGGCACATCCTACGCCTGAAAATGCAGCAGgtgagggcaaagcttgattgagcctgtgggtgagacagcaccccagccgc Alignment from Exonerate_protein2genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGC-GGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG cgcaatgcctcgccatggacccctcataataatctgttttttatcttcagACTCCATAAGGGCTGTGGCGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCGGATTGTGGTGGGGGTGGTCGGCCTGGCCTCCCTCAGCAATCATCCACCCTTGGCACATCCTACGCCTGAAAATGCAGCAGgtgagggcaaagcttgattgagcctgtgggtgagacagcaccccagccgc Alignment from Exonerate_coding2genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGC-GGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG cgcaatgcctcgccatggacccctcataataatctgttttttatcttcagACTCCATAAGGGCTGTGGCGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCGGATTGTGGTGGGGGTGGTCGGCCTGGCCTCCCTCAGCAATCATCCACCCTTGGCACATCCTACGCCTGAAAATGCAGCAGgtgagggcaaagcttgattgagcctgtgggtgagacagcaccccagccgc Alignment from GeneWise ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGC-GGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG cgcaatgcctcgccatggacccctcataataatctgttttttatcttcagACTCCATAAGGGCTGTGGCGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCGGATTGTGGTGGGGGTGGTCGGCCTGGCCTCCCTCAGCAATCATCCACCCTTGGCACATCCTACGCCTGAAAATGCAGCAGgtgagggcaaagcttgattgagcctgtgggtgagacagcaccccagccgc #### Pcnxl3_ID1169_24 --> 2 - 2 Original Alignment acTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTC-TTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACaa ctgcagaggagaggagagggaggcagattgaggaagcgattgtcttccagacTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTTCTTTTCTACCCCACTCAACCCCTTGCTGGGCAGTGCAGTCTTCATTATGTCCTACACAAGGCCCCTCAAGTTCTGGGAGAGGGACTACaagtctggctcaggagaggtaagagctgatgtcccagaggtctcaggggacg Alignment from CESAR acTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTC-TTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACaa ctgcagaggagaggagagggaggcagattgaggaagcgattgtcttccagacTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTTCTTTTCTACCCCACTCAACCCCTTGCTGGGCAGTGCAGTCTTCATTATGTCCTACACAAGGCCCCTCAAGTTCTGGGAGAGGGACTACaagtctggctcaggagaggtaagagctgatgtcccagaggtctcaggggacg Alignment from Spaln_aa2Genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTC-TTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ctgcagaggagaggagagggaggcagattgaggaagcgattgtcttccagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTTcTTTTCTACCCCACTCAACCCCTTGCTGGGCAGTGCAGTCTTCATTATGTCCTACACAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAAgtctggctcaggagaggtaagagctgatgtcccagaggtctcaggggacg Alignment from Spaln_nt2Genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCA-GGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ctgcagaggagaggagagggaggcagattgaggaagcgattgtcttccagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTTCTTTTCTACCCCACTCAACCCCTTGCTGGGCAGTGCAGTCTTCATTATGTCCTACACAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAAgtctggctcaggagaggtaagagctgatgtcccagaggtctcaggggacg Alignment from Pairagon ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGC-TCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ctgcagaggagaggagagggaggcagattgaggaagcgattgtcttccagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTTCTTTTCTACCCCACTCAACCCCTTGCTGGGCAGTGCAGTCTTCATTATGTCCTACACAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAAgtctggctcaggagaggtaagagctgatgtcccagaggtctcaggggacg Alignment from Exonerate_protein2genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTC-TTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ctgcagaggagaggagagggaggcagattgaggaagcgattgtcttccagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTTCTTTTCTACCCCACTCAACCCCTTGCTGGGCAGTGCAGTCTTCATTATGTCCTACACAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAAgtctggctcaggagaggtaagagctgatgtcccagaggtctcaggggacg Alignment from Exonerate_coding2genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTC-TTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ctgcagaggagaggagagggaggcagattgaggaagcgattgtcttccagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTTCTTTTCTACCCCACTCAACCCCTTGCTGGGCAGTGCAGTCTTCATTATGTCCTACACAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAAgtctggctcaggagaggtaagagctgatgtcccagaggtctcaggggacg Alignment from GeneWise ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGG-CTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ctgcagaggagaggagagggaggcagattgaggaagcgattgtcttccagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTTCTTTTCTACCCCACTCAACCCCTTGCTGGGCAGTGCAGTCTTCATTATGTCCTACACAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAAgtctggctcaggagaggtaagagctgatgtcccagaggtctcaggggacg #### Pcnxl3_ID1174_19 --> 0 - 0 Original Alignment CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTC-TTCATTGCCCTGAAG gtgacaccatgcagcaggcagtcactgtaaatcttacttctgttctacagAGGGAAGTCTTGCACTCTGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCTGTCAGTGCCAGCACTGTCCTTCATTGCCTTGAAGgtgagtttggaataggtgaacctcttggtatagatcagcgcacttctgtg Alignment from CESAR CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTC-TTCATTGCCCTGAAG gtgacaccatgcagcaggcagtcactgtaaatcttacttctgttctacagAGGGAAGTCTTGCACTCTGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCTGTCAGTGCCAGCACTGTCCTTCATTGCCTTGAAGgtgagtttggaataggtgaacctcttggtatagatcagcgcacttctgtg Alignment from Spaln_aa2Genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTC-TTCATTGCCCTGAAG gtgacaccatgcagcaggcagtcactgtaaatcttacttctgttctacagAGGGAAGTCTTGCACTCTGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCTGTCAGTGCCAGCACTGTCcTTCATTGCCTTGAAGgtgagtttggaataggtgaacctcttggtatagatcagcgcacttctgtg Alignment from Spaln_nt2Genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTC-TTCATTGCCCTGAAG gtgacaccatgcagcaggcagtcactgtaaatcttacttctgttctacagAGGGAAGTCTTGCACTCTGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCTGTCAGTGCCAGCACTGTCCTTCATTGCCTTGAAGgtgagtttggaataggtgaacctcttggtatagatcagcgcacttctgtg Alignment from Pairagon CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGT-CTTCATTGCCCTGAAG gtgacaccatgcagcaggcagtcactgtaaatcttacttctgttctacagAGGGAAGTCTTGCACTCTGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCTGTCAGTGCCAGCACTGTCCTTCATTGCCTTGAAGgtgagtttggaataggtgaacctcttggtatagatcagcgcacttctgtg Alignment from Exonerate_protein2genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTC-TTCATTGCCCTGAAG gtgacaccatgcagcaggcagtcactgtaaatcttacttctgttctacagAGGGAAGTCTTGCACTCTGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCTGTCAGTGCCAGCACTGTCCTTCATTGCCTTGAAGgtgagtttggaataggtgaacctcttggtatagatcagcgcacttctgtg Alignment from Exonerate_coding2genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTC-TTCATTGCCCTGAAG gtgacaccatgcagcaggcagtcactgtaaatcttacttctgttctacagAGGGAAGTCTTGCACTCTGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCTGTCAGTGCCAGCACTGTCCTTCATTGCCTTGAAGgtgagtttggaataggtgaacctcttggtatagatcagcgcacttctgtg Alignment from GeneWise CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG- gtgacaccatgcagcaggcagtcactgtaaatcttacttctgttctacagAGGGAAGTCTTGCACTCTGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCTGTCAGTGCCAGCACTGTCCTTCATTGCCTTGAAGgtgagtttggaataggtgaacctcttggtatagatcagcgcacttctgtg #### Pcnxl3_ID1178_15 --> 2 - 1 Original Alignment tgTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCAT-GGCTTTGGAGGCACAg ctcgcaggagctggcaagcttactggtcacttgtcatttctctcattcagtaTTCACCTTATGCTTTCCGTTTGTATTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTTATGTACCTCCTTGAACAGATAGACATGCATCGGCTTTGGAGGCACAggtaaaatgcacccaggatggtctgtccacaggggggactgtccacaggag Alignment from CESAR tgTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCAT-GGCTTTGGAGGCACAg ctcgcaggagctggcaagcttactggtcacttgtcatttctctcattcagtaTTCACCTTATGCTTTCCGTTTGTATTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTTATGTACCTCCTTGAACAGATAGACATGCATCGGCTTTGGAGGCACAggtaaaatgcacccaggatggtctgtccacaggggggactgtccacaggag Alignment from Spaln_aa2Genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCAT-GGCTTTGGAGGCACAG ctcgcaggagctggcaagcttactggtcacttgtcatttctctcattcagTATTCACCTTATGCTTTCCGTTTGTATTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTTATGTACCTCCTTGAACAGATAGACATGCATcGGCTTTGGAGGCACAGgtaaaatgcacccaggatggtctgtccacaggggggactgtccacaggag Alignment from Spaln_nt2Genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCAT-GGCTTTGGAGGCACAG ctcgcaggagctggcaagcttactggtcacttgtcatttctctcattcagTATTCACCTTATGCTTTCCGTTTGTATTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTTATGTACCTCCTTGAACAGATAGACATGCATCGGCTTTGGAGGCACAGgtaaaatgcacccaggatggtctgtccacaggggggactgtccacaggag Alignment from Pairagon TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCAT-GGCTTTGGAGGCACAG ctcgcaggagctggcaagcttactggtcacttgtcatttctctcattcagTATTCACCTTATGCTTTCCGTTTGTATTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTTATGTACCTCCTTGAACAGATAGACATGCATCGGCTTTGGAGGCACAGgtaaaatgcacccaggatggtctgtccacaggggggactgtccacaggag Alignment from Exonerate_protein2genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCAT-GGCTTTGGAGGCACAG ctcgcaggagctggcaagcttactggtcacttgtcatttctctcattcagTATTCACCTTATGCTTTCCGTTTGTATTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTTATGTACCTCCTTGAACAGATAGACATGCATCGGCTTTGGAGGCACAGgtaaaatgcacccaggatggtctgtccacaggggggactgtccacaggag Alignment from Exonerate_coding2genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCAT-GGCTTTGGAGGCACAG ctcgcaggagctggcaagcttactggtcacttgtcatttctctcattcagTATTCACCTTATGCTTTCCGTTTGTATTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTTATGTACCTCCTTGAACAGATAGACATGCATCGGCTTTGGAGGCACAGgtaaaatgcacccaggatggtctgtccacaggggggactgtccacaggag Alignment from GeneWise TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCAT-GGCTTTGGAGGCACAG ctcgcaggagctggcaagcttactggtcacttgtcatttctctcattcagTATTCACCTTATGCTTTCCGTTTGTATTCCTCCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTTATGTACCTCCTTGAACAGATAGACATGCATCGGCTTTGGAGGCACAGgtaaaatgcacccaggatggtctgtccacaggggggactgtccacaggag #### Pcnxl3_ID1179_14 --> 0 - 1 Original Alignment GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCT-GTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTg ccagggaggtcactggggaaggcccaagcacactgatgtttgacgtatagGGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTGCTCATCTGGTTGCTGGATGCCCTCGGGACCGCTCAGCCCTTCCCACCTCGTCTCTCTGTATGGCCTCACGCTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTggtaacccagggcaagatagacccaagggactgagtctgaaggctgggcct Alignment from CESAR GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCT-GTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTg ccagggaggtcactggggaaggcccaagcacactgatgtttgacgtatagGGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTGCTCATCTGGTTGCTGGATGCCCTCGGGACCGCTCAGCCCTTCCCACCTCGTCTCTCTGTATGGCCTCACGCTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTggtaacccagggcaagatagacccaagggactgagtctgaaggctgggcct Alignment from Spaln_aa2Genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCT-GTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG ccagggaggtcactggggaaggcccaagcacactgatgtttgacgtatagGGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTGCTCATCTGGTTGCTGGATGCCCTCGGGACCGCTCAGCCCTTCCCACCTcGTCTCTCTGTATGGCCTCACGCTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTGgtaacccagggcaagatagacccaagggactgagtctgaaggctgggcct Alignment from Spaln_nt2Genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCT-GTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG ccagggaggtcactggggaaggcccaagcacactgatgtttgacgtatagGGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTGCTCATCTGGTTGCTGGATGCCCTCGGGACCGCTCAGCCCTTCCCACCTCGTCTCTCTGTATGGCCTCACGCTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTGgtaacccagggcaagatagacccaagggactgagtctgaaggctgggcct Alignment from Pairagon GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCT-GTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG ccagggaggtcactggggaaggcccaagcacactgatgtttgacgtatagGGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTGCTCATCTGGTTGCTGGATGCCCTCGGGACCGCTCAGCCCTTCCCACCTCGTCTCTCTGTATGGCCTCACGCTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTGgtaacccagggcaagatagacccaagggactgagtctgaaggctgggcct Alignment from Exonerate_protein2genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCT-GTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG ccagggaggtcactggggaaggcccaagcacactgatgtttgacgtatagGGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTGCTCATCTGGTTGCTGGATGCCCTCGGGACCGCTCAGCCCTTCCCACCTCGTCTCTCTGTATGGCCTCACGCTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTGgtaacccagggcaagatagacccaagggactgagtctgaaggctgggcct Alignment from Exonerate_coding2genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCT-GTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG ccagggaggtcactggggaaggcccaagcacactgatgtttgacgtatagGGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTGCTCATCTGGTTGCTGGATGCCCTCGGGACCGCTCAGCCCTTCCCACCTCGTCTCTCTGTATGGCCTCACGCTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTGgtaacccagggcaagatagacccaagggactgagtctgaaggctgggcct Alignment from GeneWise GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCT-GTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG ccagggaggtcactggggaaggcccaagcacactgatgtttgacgtatagGGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTGCTCATCTGGTTGCTGGATGCCCTCGGGACCGCTCAGCCCTTCCCACCTCGTCTCTCTGTATGGCCTCACGCTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTGgtaacccagggcaagatagacccaagggactgagtctgaaggctgggcct #### Pcnxl3_ID1180_13 --> 0 - 0 Original Alignment AGCGTGCAGCCT-GATGCAGCATCCCCAATGCAC tccatggacactagtactcgttgccaacctcataccccgtgtccccacagAGTGTGCAGCCTCGATGCAGCATCCCCCATGCACgtgagtacttgaggggtgatactctggccaggaggcactgggaaggtcta Alignment from CESAR AGCGTGCAGCCT-GATGCAGCATCCCCAATGCAC tccatggacactagtactcgttgccaacctcataccccgtgtccccacagAGTGTGCAGCCTCGATGCAGCATCCCCCATGCACgtgagtacttgaggggtgatactctggccaggaggcactgggaaggtcta Alignment from Spaln_aa2Genome TG---CAGCCTGATGCAGCATCCCCAATGCAC tccatggacactagtactcgttgccaacctcataccccgtgtccccacagagTGTGCAGCCTCGATGCAGCATCCCCCATGCACgtgagtacttgaggggtgatactctggccaggaggcactgggaaggtcta Alignment from Spaln_nt2Genome AGCGTGCAGCCT-GATGCAGCATCCCCAATGCAC tccatggacactagtactcgttgccaacctcataccccgtgtccccacagAGTGTGCAGCCTCGATGCAGCATCCCCCATGCACgtgagtacttgaggggtgatactctggccaggaggcactgggaaggtcta Alignment from Pairagon AGCGTGCAGCCT-GATGCAGCATCCCCAATGCAC tccatggacactagtactcgttgccaacctcataccccgtgtccccacagAGTGTGCAGCCTCGATGCAGCATCCCCCATGCACgtgagtacttgaggggtgatactctggccaggaggcactgggaaggtcta Alignment from Exonerate_protein2genome AGCGTGCAGCCT-GATGCAGCATCCCCAATGCAC tccatggacactagtactcgttgccaacctcataccccgtgtccccacagAGTGTGCAGCCTCGATGCAGCATCCCCCATGCACgtgagtacttgaggggtgatactctggccaggaggcactgggaaggtcta Alignment from Exonerate_coding2genome tccatggacactagtactcgttgccaacctcataccccgtgtccccacagagtgtgcagcctcgatgcagcatcccccatgcacgtgagtacttgaggggtgatactctggccaggaggcactgggaaggtcta Alignment from GeneWise tccatggacactagtactcgttgccaacctcataccccgtgtccccacagagtgtgcagcctcgatgcagcatcccccatgcacgtgagtacttgaggggtgatactctggccaggaggcactgggaaggtcta #### Pcnxl3_ID1185_8 --> 1 - 1 Original Alignment cAGCCTGCAGGAGGCTCAGCGGGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTCCGCTCTGCACTTTGCCTCTTCCCTGTTGCTCACCCGAGCTGGCCCCAACGTCCATGAAGCCAGCAAT-TTTGATGACACCTCTGAGGGTGCTGTGCACTATTTCTACGACGAGAGTg gaaggggcgactggctctcctagtgctggtgtgcatttgcctctgcgcagcAGCCTGCAGGAGGCTCAGCGTGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTCTGCTCTGCACTTTGCCTCTTCCCTGCTGCTCACCCGAGCTGGCCCGAACGTCCATGAAGCCAGCAATCTTTCATGACACCTCTGAAGGTGCTGTGCACTATTTCTACGATGAGAGTggtaaagccttccccaaccagcccaccacctcttatgtacttcccagaggt Alignment from CESAR cAGCCTGCAGGAGGCTCAGCGGGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTCCGCTCTGCACTTTGCCTCTTCCCTGTTGCTCACCCGAGCTGGCCCCAACGTCCATGAAGCCAGCAAT-TTTGATGACACCTCTGAGGGTGCTGTGCACTATTTCTACGACGAGAGTg gaaggggcgactggctctcctagtgctggtgtgcatttgcctctgcgcagcAGCCTGCAGGAGGCTCAGCGTGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTCTGCTCTGCACTTTGCCTCTTCCCTGCTGCTCACCCGAGCTGGCCCGAACGTCCATGAAGCCAGCAATCTTTCATGACACCTCTGAAGGTGCTGTGCACTATTTCTACGATGAGAGTggtaaagccttccccaaccagcccaccacctcttatgtacttcccagaggt Alignment from Spaln_aa2Genome CAGCCTGCAGGAGGCTCAGCGGGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTCCGCTCTGCACTTTGCCTCTTCCCTGTTGCTCACCCGAGCTGGCCCCAACGTCCATGAAGCCAGCAAT-TTTGATGACACCTCTGAGGGTGCTGTGCACTATTTCTACGACGAGAGTG gaaggggcgactggctctcctagtgctggtgtgcatttgcctctgcgcagCAGCCTGCAGGAGGCTCAGCGTGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTCTGCTCTGCACTTTGCCTCTTCCCTGCTGCTCACCCGAGCTGGCCCGAACGTCCATGAAGCCAGCAATcTTTCATGACACCTCTGAAGGTGCTGTGCACTATTTCTACGATGAGAGTGgtaaagccttccccaaccagcccaccacctcttatgtacttcccagaggt Alignment from Spaln_nt2Genome CAGCCTGCAGGAGGCTCAGCGGGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTCCGCTCTGCACTTTGCCTCTTCCCTGTTGCTCACCCGAGCTGGCCCCAACGTCCATGAAGCCAGCAAT-TTTGATGACACCTCTGAGGGTGCTGTGCACTATTTCTACGACGAGAGTG gaaggggcgactggctctcctagtgctggtgtgcatttgcctctgcgcagCAGCCTGCAGGAGGCTCAGCGTGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTCTGCTCTGCACTTTGCCTCTTCCCTGCTGCTCACCCGAGCTGGCCCGAACGTCCATGAAGCCAGCAATCTTTCATGACACCTCTGAAGGTGCTGTGCACTATTTCTACGATGAGAGTGgtaaagccttccccaaccagcccaccacctcttatgtacttcccagaggt Alignment from Pairagon CAGCCTGCAGGAGGCTCAGCGGGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTCCGCTCTGCACTTTGCCTCTTCCCTGTTGCTCACCCGAGCTGGCCCCAACGTCCATGAAGCCAGCAAT-TTTGATGACACCTCTGAGGGTGCTGTGCACTATTTCTACGACGAGAGTG gaaggggcgactggctctcctagtgctggtgtgcatttgcctctgcgcagCAGCCTGCAGGAGGCTCAGCGTGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTCTGCTCTGCACTTTGCCTCTTCCCTGCTGCTCACCCGAGCTGGCCCGAACGTCCATGAAGCCAGCAATCTTTCATGACACCTCTGAAGGTGCTGTGCACTATTTCTACGATGAGAGTGgtaaagccttccccaaccagcccaccacctcttatgtacttcccagaggt Alignment from Exonerate_protein2genome CAGCCTGCAGGAGGCTCAGCGGGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTCCGCTCTGCACTTTGCCTCTTCCCTGTTGCTCACCCGAGCTGGCCCCAACGTCCATGAAGCCAGCAAT-TTTGATGACACCTCTGAGGGTGCTGTGCACTATTTCTACGACGAGAGTG gaaggggcgactggctctcctagtgctggtgtgcatttgcctctgcgcagCAGCCTGCAGGAGGCTCAGCGTGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTCTGCTCTGCACTTTGCCTCTTCCCTGCTGCTCACCCGAGCTGGCCCGAACGTCCATGAAGCCAGCAATCTTTCATGACACCTCTGAAGGTGCTGTGCACTATTTCTACGATGAGAGTGgtaaagccttccccaaccagcccaccacctcttatgtacttcccagaggt Alignment from Exonerate_coding2genome CAGCCTGCAGGAGGCTCAGCGGGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTCCGCTCTGCACTTTGCCTCTTCCCTGTTGCTCACCCGAGCTGGCCCCAACGTCCATGAAGCCAGCAAT-TTTGATGACACCTCTGAGGGTGCTGTGCACTATTTCTACGACGAGAGTG gaaggggcgactggctctcctagtgctggtgtgcatttgcctctgcgcagCAGCCTGCAGGAGGCTCAGCGTGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTCTGCTCTGCACTTTGCCTCTTCCCTGCTGCTCACCCGAGCTGGCCCGAACGTCCATGAAGCCAGCAATCTTTCATGACACCTCTGAAGGTGCTGTGCACTATTTCTACGATGAGAGTGgtaaagccttccccaaccagcccaccacctcttatgtacttcccagaggt Alignment from GeneWise CAGCCTGCAGGAGGCTCAGCGGGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTCCGCTCTGCACTTTGCCTCTTCCCTGTTGCTCACCCGAGCTGGCCCCAACGTCCATGAAGCCAGCAATTTT-GATGACACCTCTGAGGGTGCTGTGCACTATTTCTACGACGAGAGTG gaaggggcgactggctctcctagtgctggtgtgcatttgcctctgcgcagCAGCCTGCAGGAGGCTCAGCGTGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTCTGCTCTGCACTTTGCCTCTTCCCTGCTGCTCACCCGAGCTGGCCCGAACGTCCATGAAGCCAGCAATCTTTCATGACACCTCTGAAGGTGCTGTGCACTATTTCTACGATGAGAGTGgtaaagccttccccaaccagcccaccacctcttatgtacttcccagaggt #### Pcnxl3_ID1189_4 --> 0 - 1 Original Alignment GAGTTGCTGCCCCGGATGGAG-GATTCTGGGCCCCTCAGAg tactcactccccctgcttgtttattcgttgggctcccgtttcgtttgaagGAGTTGCTGCCCCGGATGGAGCGATTCTGGGCCCCTCAGAggtatgttgctgctgttctgggcggggtggtggtggtgtggtgcaggataa Alignment from CESAR GAGTTGCTGCCCCGGATGGAG-GATTCTGGGCCCCTCAGAg tactcactccccctgcttgtttattcgttgggctcccgtttcgtttgaagGAGTTGCTGCCCCGGATGGAGCGATTCTGGGCCCCTCAGAggtatgttgctgctgttctgggcggggtggtggtggtgtggtgcaggataa Alignment from Spaln_aa2Genome GAGTTGCTGCCCCGGATGGAG-GATTCTGGGCCCCTCAGAG tactcactccccctgcttgtttattcgttgggctcccgtttcgtttgaagGAGTTGCTGCCCCGGATGGAGcGATTCTGGGCCCCTCAGAGgtatgttgctgctgttctgggcggggtggtggtggtgtggtgcaggataa Alignment from Spaln_nt2Genome GAGTTGCTGCCCCGGATGGAG-GATTCTGGGCCCCTCAGAG tactcactccccctgcttgtttattcgttgggctcccgtttcgtttgaagGAGTTGCTGCCCCGGATGGAGCGATTCTGGGCCCCTCAGAGgtatgttgctgctgttctgggcggggtggtggtggtgtggtgcaggataa Alignment from Pairagon GAGTTGCTGCCCCGGATGGAG-GATTCTGGGCCCCTCAGAG tactcactccccctgcttgtttattcgttgggctcccgtttcgtttgaagGAGTTGCTGCCCCGGATGGAGCGATTCTGGGCCCCTCAGAGgtatgttgctgctgttctgggcggggtggtggtggtgtggtgcaggataa Alignment from Exonerate_protein2genome GAGTTGCTGCCCCGGATGGAG-GATTCTGGGCCCCTCAGAG tactcactccccctgcttgtttattcgttgggctcccgtttcgtttgaagGAGTTGCTGCCCCGGATGGAGCGATTCTGGGCCCCTCAGAGgtatgttgctgctgttctgggcggggtggtggtggtgtggtgcaggataa Alignment from Exonerate_coding2genome GAGTTGCTGCCCCGGATGGAG-GATTCTGGGCCCCTCAGAG tactcactccccctgcttgtttattcgttgggctcccgtttcgtttgaagGAGTTGCTGCCCCGGATGGAGCGATTCTGGGCCCCTCAGAGgtatgttgctgctgttctgggcggggtggtggtggtgtggtgcaggataa Alignment from GeneWise tactcactccccctgcttgtttattcgttgggctcccgtttcgtttgaaggagttgctgccccggatggagcgattctgggcccctcagaggtatgttgctgctgttctgggcggggtggtggtggtgtggtgcaggataa #### Pcx_ID554_4 --> 0 - 1 Original Alignment GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGAC-TTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAg gaaaaatgagagagaggaacgtgagctgcagcccttactcctgttcacagGAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTTCTCTCAGAGCGAGCAGACCTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCGGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATTGATGCAggtagaataaaagccctcccctggcaggaagagatagtctgaggattctgt Alignment from CESAR GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGAC-TTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAg gaaaaatgagagagaggaacgtgagctgcagcccttactcctgttcacagGAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTTCTCTCAGAGCGAGCAGACCTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCGGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATTGATGCAggtagaataaaagccctcccctggcaggaagagatagtctgaggattctgt Alignment from Spaln_aa2Genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGAC-TTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaaaaatgagagagaggaacgtgagctgcagcccttactcctgttcacagGAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTTCTCTCAGAGCGAGCAGACcTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCGGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATTGATGCAGgtagaataaaagccctcccctggcaggaagagatagtctgaggattctgt Alignment from Spaln_nt2Genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGA-CTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaaaaatgagagagaggaacgtgagctgcagcccttactcctgttcacagGAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTTCTCTCAGAGCGAGCAGACCTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCGGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATTGATGCAGgtagaataaaagccctcccctggcaggaagagatagtctgaggattctgt Alignment from Pairagon GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGA-CTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaaaaatgagagagaggaacgtgagctgcagcccttactcctgttcacagGAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTTCTCTCAGAGCGAGCAGACCTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCGGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATTGATGCAGgtagaataaaagccctcccctggcaggaagagatagtctgaggattctgt Alignment from Exonerate_protein2genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGAC-TTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaaaaatgagagagaggaacgtgagctgcagcccttactcctgttcacagGAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTTCTCTCAGAGCGAGCAGACCTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCGGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATTGATGCAGgtagaataaaagccctcccctggcaggaagagatagtctgaggattctgt Alignment from Exonerate_coding2genome GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGA-CTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCT gaaaaatgagagagaggaacgtgagctgcagcccttactcctgttcacagGAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTTCTCTCAGAGCGAGCAGACCTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCGGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATTGATgcaggtagaataaaagccctcccctggcaggaagagatagtctgaggattctgt Alignment from GeneWise GAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCA-GACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaaaaatgagagagaggaacgtgagctgcagcccttactcctgttcacagGAAAATGGTGTAGATGCGGTGCATCCTGGCTATGGGTTTCTCTCAGAGCGAGCAGACCTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCGGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATTGATGCAGgtagaataaaagccctcccctggcaggaagagatagtctgaggattctgt #### Pcx_ID556_6 --> 0 - 1 Original Alignment GAGTTGGAAGAGAATTACACC-CGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAg gagggcacagagctggccccatgtctgctaattattttctcaatcttcagGAGTTGGAAGAGAATTACACCCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCATTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAggtaaaaggggatctgtgtgaaacatcagaagcctacatctccccagttta Alignment from CESAR GAGTTGGAAGAGAATTACACC-CGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAg gagggcacagagctggccccatgtctgctaattattttctcaatcttcagGAGTTGGAAGAGAATTACACCCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCATTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAggtaaaaggggatctgtgtgaaacatcagaagcctacatctccccagttta Alignment from Spaln_aa2Genome GAGTTGGAAGAGAATTACACC-CGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG gagggcacagagctggccccatgtctgctaattattttctcaatcttcagGAGTTGGAAGAGAATTACACCcCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCATTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAGgtaaaaggggatctgtgtgaaacatcagaagcctacatctccccagttta Alignment from Spaln_nt2Genome GAGTTGGAAGAGAATTACA-CCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG gagggcacagagctggccccatgtctgctaattattttctcaatcttcagGAGTTGGAAGAGAATTACACCCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCATTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAGgtaaaaggggatctgtgtgaaacatcagaagcctacatctccccagttta Alignment from Pairagon GAGTTGGAAGAGAATTACA-CCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG gagggcacagagctggccccatgtctgctaattattttctcaatcttcagGAGTTGGAAGAGAATTACACCCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCATTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAGgtaaaaggggatctgtgtgaaacatcagaagcctacatctccccagttta Alignment from Exonerate_protein2genome GAGTTGGAAGAGAATTACACC-CGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG gagggcacagagctggccccatgtctgctaattattttctcaatcttcagGAGTTGGAAGAGAATTACACCCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCATTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAGgtaaaaggggatctgtgtgaaacatcagaagcctacatctccccagttta Alignment from Exonerate_coding2genome GAGTTGGAAGAGAATTACACC-CGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG gagggcacagagctggccccatgtctgctaattattttctcaatcttcagGAGTTGGAAGAGAATTACACCCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCATTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAGgtaaaaggggatctgtgtgaaacatcagaagcctacatctccccagttta Alignment from GeneWise GAGTTGGAAGAGAATTAC-ACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG gagggcacagagctggccccatgtctgctaattattttctcaatcttcagGAGTTGGAAGAGAATTACACCCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCATTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAGgtaaaaggggatctgtgtgaaacatcagaagcctacatctccccagttta #### Pcx_ID563_12 --> 2 - 1 Original Alignment gaCATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTG-AGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAg accctggactcctctgagcagccatgacactctgatgtgataccttgcaggaCATGTCATGGTGAATGGCCCTACCACCCCAATCCCAGTCAATGTGCACCCCCAGTCCTGTGGATCCTGCTGTTCCTGCGGTGCCTATAggtatgataaggtccatttttaacaccacaatgggacagcgggaggtggct Alignment from CESAR gaCATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTG-AGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAg accctggactcctctgagcagccatgacactctgatgtgataccttgcaggaCATGTCATGGTGAATGGCCCTACCACCCCAATCCCAGTCAATGTGCACCCCCAGTCCTGTGGATCCTGCTGTTCCTGCGGTGCCTATAggtatgataaggtccatttttaacaccacaatgggacagcgggaggtggct Alignment from Spaln_aa2Genome GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTGAGCCCC-AGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG accctggactcctctgagcagccatgacactctgatgtgataccttgcagGACATGTCATGGTGAATGGCCCTACCACCCCAATCCCAGTCAATGTGCACCCCcAGTCCTGTGGATCCTGCTGTTCCTGCGGTGCCTATAGgtatgataaggtccatttttaacaccacaatgggacagcgggaggtggct Alignment from Spaln_nt2Genome GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTG-AGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG accctggactcctctgagcagccatgacactctgatgtgataccttgcagGACATGTCATGGTGAATGGCCCTACCACCCCAATCCCAGTCAATGTGCACCCCCAGTCCTGTGGATCCTGCTGTTCCTGCGGTGCCTATAGgtatgataaggtccatttttaacaccacaatgggacagcgggaggtggct Alignment from Pairagon GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTG-AGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG accctggactcctctgagcagccatgacactctgatgtgataccttgcagGACATGTCATGGTGAATGGCCCTACCACCCCAATCCCAGTCAATGTGCACCCCCAGTCCTGTGGATCCTGCTGTTCCTGCGGTGCCTATAGgtatgataaggtccatttttaacaccacaatgggacagcgggaggtggct Alignment from Exonerate_protein2genome GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTG-AGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG accctggactcctctgagcagccatgacactctgatgtgataccttgcagGACATGTCATGGTGAATGGCCCTACCACCCCAATCCCAGTCAATGTGCACCCCCAGTCCTGTGGATCCTGCTGTTCCTGCGGTGCCTATAGgtatgataaggtccatttttaacaccacaatgggacagcgggaggtggct Alignment from Exonerate_coding2genome GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTG-AGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG accctggactcctctgagcagccatgacactctgatgtgataccttgcagGACATGTCATGGTGAATGGCCCTACCACCCCAATCCCAGTCAATGTGCACCCCCAGTCCTGTGGATCCTGCTGTTCCTGCGGTGCCTATAGgtatgataaggtccatttttaacaccacaatgggacagcgggaggtggct Alignment from GeneWise GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCTGTCAATGTG-AGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG accctggactcctctgagcagccatgacactctgatgtgataccttgcagGACATGTCATGGTGAATGGCCCTACCACCCCAATCCCAGTCAATGTGCACCCCCAGTCCTGTGGATCCTGCTGTTCCTGCGGTGCCTATAGgtatgataaggtccatttttaacaccacaatgggacagcgggaggtggct #### Pcx_ID564_13 --> 2 - 2 Original Alignment gcCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGC-TACACCAACTACCCTGACAACGTGGTCTTCaa gcgggaggtggctgctgtaagacaggcgctcctaccctctctccacccaggcCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGACCAGAGGGCTTTGCCCGAGCAGTTCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCATTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCACCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGTGCCACATTCGATGTTGCGATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCAAACATCCCATTCCAGATGCTACTCAGGGGGGCCAATGCTGTGGGCCTATACCAACTACGCTGACAATGTGGTCTTCaagtgagtctgggtctgctgagaccacagcagtggactcccaagagtctttg Alignment from CESAR gcCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGC-TACACCAACTACCCTGACAACGTGGTCTTCaa gcgggaggtggctgctgtaagacaggcgctcctaccctctctccacccaggcCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGACCAGAGGGCTTTGCCCGAGCAGTTCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCATTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCACCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGTGCCACATTCGATGTTGCGATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCAAACATCCCATTCCAGATGCTACTCAGGGGGGCCAATGCTGTGGGCCTATACCAACTACGCTGACAATGTGGTCTTCaagtgagtctgggtctgctgagaccacagcagtggactcccaagagtctttg Alignment from Spaln_aa2Genome GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGC-TACACCAACTACCCTGACAACGTGGTCTTCAA gcgggaggtggctgctgtaagacaggcgctcctaccctctctccacccagGCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGACCAGAGGGCTTTGCCCGAGCAGTTCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCATTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCACCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGTGCCACATTCGATGTTGCGATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCAAACATCCCATTCCAGATGCTACTCAGGGGGGCCAATGCTGTGGGCcTATACCAACTACGCTGACAATGTGGTCTTCAAgtgagtctgggtctgctgagaccacagcagtggactcccaagagtctttg Alignment from Spaln_nt2Genome GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGG-CTACACCAACTACCCTGACAACGTGGTCTTCAA gcgggaggtggctgctgtaagacaggcgctcctaccctctctccacccagGCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGACCAGAGGGCTTTGCCCGAGCAGTTCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCATTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCACCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGTGCCACATTCGATGTTGCGATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCAAACATCCCATTCCAGATGCTACTCAGGGGGGCCAATGCTGTGGGCCTATACCAACTACGCTGACAATGTGGTCTTCAAgtgagtctgggtctgctgagaccacagcagtggactcccaagagtctttg Alignment from Pairagon GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGG-CTACACCAACTACCCTGACAACGTGGTCTTCAA gcgggaggtggctgctgtaagacaggcgctcctaccctctctccacccagGCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGACCAGAGGGCTTTGCCCGAGCAGTTCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCATTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCACCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGTGCCACATTCGATGTTGCGATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCAAACATCCCATTCCAGATGCTACTCAGGGGGGCCAATGCTGTGGGCCTATACCAACTACGCTGACAATGTGGTCTTCAAgtgagtctgggtctgctgagaccacagcagtggactcccaagagtctttg Alignment from Exonerate_protein2genome GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGC-TACACCAACTACCCTGACAACGTGGTCTTCAA gcgggaggtggctgctgtaagacaggcgctcctaccctctctccacccagGCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGACCAGAGGGCTTTGCCCGAGCAGTTCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCATTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCACCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGTGCCACATTCGATGTTGCGATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCAAACATCCCATTCCAGATGCTACTCAGGGGGGCCAATGCTGTGGGCCTATACCAACTACGCTGACAATGTGGTCTTCAAgtgagtctgggtctgctgagaccacagcagtggactcccaagagtctttg Alignment from Exonerate_coding2genome GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGC-TACACCAACTACCCTGACAACGTGGTCTTCAAG gcgggaggtggctgctgtaagacaggcgctcctaccctctctccacccagGCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGACCAGAGGGCTTTGCCCGAGCAGTTCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCATTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCACCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGTGCCACATTCGATGTTGCGATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCAAACATCCCATTCCAGATGCTACTCAGGGGGGCCAATGCTGTGGGCCTATACCAACTACGCTGACAATGTGGTCTTC-AAgtgagtctgggtctgctgagaccacagcagtggactcccaagagtctttg Alignment from GeneWise GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTG-GGCTACACCAACTACCCTGACAACGTGGTCTTCAA gcgggaggtggctgctgtaagacaggcgctcctaccctctctccacccagGCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGACCAGAGGGCTTTGCCCGAGCAGTTCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCATTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCACCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGTGCCACATTCGATGTTGCGATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCAAACATCCCATTCCAGATGCTACTCAGGGGGGCCAATGCTGTGGGCCTATACCAACTACGCTGACAATGTGGTCTTCAAgtgagtctgggtctgctgagaccacagcagtggactcccaagagtctttg #### Pcx_ID566_15 --> 0 - 1 Original Alignment GACATGGCGGGCCTGCTG-AAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAg cacatcaggtccctcctcaccataattcgtcattgtttgttctctttcagGACATGGCGGGCCTGCTGCAAGCCTGCTGCCTGCACCATGCTGGTCAGCTCCCTCTGGGACCGGTTCCCTGACCTCCCACTGCACATCCATACCCATGATACGTCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGACGTTGTGGATGTGGTGGCAGTAGACTCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAggtaatacggaggaacaacttagggccaccccggaacaacttgacgccgcc Alignment from CESAR GACATGGCGGGCCTGCTG-AAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAg cacatcaggtccctcctcaccataattcgtcattgtttgttctctttcagGACATGGCGGGCCTGCTGCAAGCCTGCTGCCTGCACCATGCTGGTCAGCTCCCTCTGGGACCGGTTCCCTGACCTCCCACTGCACATCCATACCCATGATACGTCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGACGTTGTGGATGTGGTGGCAGTAGACTCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAggtaatacggaggaacaacttagggccaccccggaacaacttgacgccgcc Alignment from Spaln_aa2Genome GACATGGCGGGCCTGCTG-AAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG cacatcaggtccctcctcaccataattcgtcattgtttgttctctttcagGACATGGCGGGCCTGCTGcAAGCCTGCTGCCTGCACCATGCTGGTCAGCTCCCTCTGGGACCGGTTCCCTGACCTCCCACTGCACATCCATACCCATGATACGTCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGACGTTGTGGATGTGGTGGCAGTAGACTCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAGgtaatacggaggaacaacttagggccaccccggaacaacttgacgccgcc Alignment from Spaln_nt2Genome GACATGGCGGGCCTGCTG-AAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG cacatcaggtccctcctcaccataattcgtcattgtttgttctctttcagGACATGGCGGGCCTGCTGCAAGCCTGCTGCCTGCACCATGCTGGTCAGCTCCCTCTGGGACCGGTTCCCTGACCTCCCACTGCACATCCATACCCATGATACGTCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGACGTTGTGGATGTGGTGGCAGTAGACTCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAGgtaatacggaggaacaacttagggccaccccggaacaacttgacgccgcc Alignment from Pairagon GACATGGCGGGCCTGCTG-AAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG cacatcaggtccctcctcaccataattcgtcattgtttgttctctttcagGACATGGCGGGCCTGCTGCAAGCCTGCTGCCTGCACCATGCTGGTCAGCTCCCTCTGGGACCGGTTCCCTGACCTCCCACTGCACATCCATACCCATGATACGTCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGACGTTGTGGATGTGGTGGCAGTAGACTCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAGgtaatacggaggaacaacttagggccaccccggaacaacttgacgccgcc Alignment from Exonerate_protein2genome GACATGGCGGGCCTGCTG-AAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG cacatcaggtccctcctcaccataattcgtcattgtttgttctctttcagGACATGGCGGGCCTGCTGCAAGCCTGCTGCCTGCACCATGCTGGTCAGCTCCCTCTGGGACCGGTTCCCTGACCTCCCACTGCACATCCATACCCATGATACGTCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGACGTTGTGGATGTGGTGGCAGTAGACTCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAGgtaatacggaggaacaacttagggccaccccggaacaacttgacgccgcc Alignment from Exonerate_coding2genome GACATGGCGGGCCTGCTG-AAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG cacatcaggtccctcctcaccataattcgtcattgtttgttctctttcagGACATGGCGGGCCTGCTGCAAGCCTGCTGCCTGCACCATGCTGGTCAGCTCCCTCTGGGACCGGTTCCCTGACCTCCCACTGCACATCCATACCCATGATACGTCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGACGTTGTGGATGTGGTGGCAGTAGACTCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAGgtaatacggaggaacaacttagggccaccccggaacaacttgacgccgcc Alignment from GeneWise GACATGGCGGGCCTGCTG---------------------------------------------------AAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG CACATCAGGTCCCTCCTCACCATAATTCGTCATTGTTTGTTCTCTTTCAGGACATGGCGGGCCTGCTGCAAGCCTGCTGCCTGCACCATGCTGGTCAGCTCCCTCTGGGACCGGTTCCCTGACCTCCCACTGCACATCCATACCCATGATACGTCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGACGTTGTGGATGTGGTGGCAGTAGACTCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAGgtaatacggaggaacaacttagggccaccccggaacaacttgacgccgcc #### Pcx_ID567_16 --> 2 - 0 Original Alignment agGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAG-TCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG tgggactattggaacactaccaacttctcttagtcctgactcctttctagcgGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTTGATTGCATGGCCACCATGAAGCTCTGGCAACTCCGACGTATATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCATTTCCAGGCTCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAGgtaggccgggtccttacctaatgaccctgcatgctgtgctcctacctctg Alignment from CESAR agGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAG-TCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG tgggactattggaacactaccaacttctcttagtcctgactcctttctagcgGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTTGATTGCATGGCCACCATGAAGCTCTGGCAACTCCGACGTATATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCATTTCCAGGCTCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAGgtaggccgggtccttacctaatgaccctgcatgctgtgctcctacctctg Alignment from Spaln_aa2Genome AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAG-TCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG tgggactattggaacactaccaacttctcttagtcctgactcctttctagCGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTTGATTGCATGGCCACCATGAAGcTCTGGCAACTCCGACGTATATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCATTTCCAGGCTCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAGgtaggccgggtccttacctaatgaccctgcatgctgtgctcctacctctg Alignment from Spaln_nt2Genome AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAG-TCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG tgggactattggaacactaccaacttctcttagtcctgactcctttctagCGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTTGATTGCATGGCCACCATGAAGCTCTGGCAACTCCGACGTATATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCATTTCCAGGCTCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAGgtaggccgggtccttacctaatgaccctgcatgctgtgctcctacctctg Alignment from Pairagon AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAG-TCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG tgggactattggaacactaccaacttctcttagtcctgactcctttctagCGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTTGATTGCATGGCCACCATGAAGCTCTGGCAACTCCGACGTATATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCATTTCCAGGCTCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAGgtaggccgggtccttacctaatgaccctgcatgctgtgctcctacctctg Alignment from Exonerate_protein2genome AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAG-TCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG tgggactattggaacactaccaacttctcttagtcctgactcctttctagCGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTTGATTGCATGGCCACCATGAAGCTCTGGCAACTCCGACGTATATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCATTTCCAGGCTCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAGgtaggccgggtccttacctaatgaccctgcatgctgtgctcctacctctg Alignment from Exonerate_coding2genome AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTC---TGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG tgggactattggaacactaccaacttctcttagtcctgactcctttctagCGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTTGATTGCATGGCCACCATGAAG--CTCTGGCAACTCCGACGTATATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCATTTCCAGGCTCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAGgtaggccgggtccttacctaatgaccctgcatgctgtgctcctacctctg Alignment from GeneWise AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAG-TCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG tgggactattggaacactaccaacttctcttagtcctgactcctttctagCGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTTGATTGCATGGCCACCATGAAGCTCTGGCAACTCCGACGTATATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCATTTCCAGGCTCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAGgtaggccgggtccttacctaatgaccctgcatgctgtgctcctacctctg #### Pdcd11_ID10134_28 --> 1 - 0 Original Alignment cGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGG-GAGCGCCAGGAGTCTGAGAGCGAGCAG atggtgcccagacacctctgccctctctgaccttccactctgtcctgcagtGTGAACCCCATGAAGAACCTGATAGAGCTGTCACTCCTTCCCAGTGACACTGGGAGGCCAGATGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGAGGGCCAAAAAAGGAAAGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGCGAGCGCCATGAGTCTGAGAGCGAGCAGgtaattacccctccctgggcggcattgcctcatctcacccatcagtgttt Alignment from CESAR cGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGG-GAGCGCCAGGAGTCTGAGAGCGAGCAG atggtgcccagacacctctgccctctctgaccttccactctgtcctgcagtGTGAACCCCATGAAGAACCTGATAGAGCTGTCACTCCTTCCCAGTGACACTGGGAGGCCAGATGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGAGGGCCAAAAAAGGAAAGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGCGAGCGCCATGAGTCTGAGAGCGAGCAGgtaattacccctccctgggcggcattgcctcatctcacccatcagtgttt Alignment from Spaln_aa2Genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGG-GAGCGCCAGGAGTCTGAGAGCGAGCAG atggtgcccagacacctctgccctctctgaccttccactctgtcctgcagTGTGAACCCCATGAAGAACCTGATAGAGCTGTCACTCCTTCCCAGTGACACTGGGAGGCCAGATGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGAGGGCCAAAAAAGGAAAGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGcGAGCGCCATGAGTCTGAGAGCGAGCAGgtaattacccctccctgggcggcattgcctcatctcacccatcagtgttt Alignment from Spaln_nt2Genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGG-GAGCGCCAGGAGTCTGAGAGCGAGCAG atggtgcccagacacctctgccctctctgaccttccactctgtcctgcagTGTGAACCCCATGAAGAACCTGATAGAGCTGTCACTCCTTCCCAGTGACACTGGGAGGCCAGATGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGAGGGCCAAAAAAGGAAAGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGCGAGCGCCATGAGTCTGAGAGCGAGCAGgtaattacccctccctgggcggcattgcctcatctcacccatcagtgttt Alignment from Pairagon CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGG-GAGCGCCAGGAGTCTGAGAGCGAGCAG atggtgcccagacacctctgccctctctgaccttccactctgtcctgcagTGTGAACCCCATGAAGAACCTGATAGAGCTGTCACTCCTTCCCAGTGACACTGGGAGGCCAGATGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGAGGGCCAAAAAAGGAAAGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGCGAGCGCCATGAGTCTGAGAGCGAGCAGgtaattacccctccctgggcggcattgcctcatctcacccatcagtgttt Alignment from Exonerate_protein2genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGG-GAGCGCCAGGAGTCTGAGAGCGAGCAG atggtgcccagacacctctgccctctctgaccttccactctgtcctgcagTGTGAACCCCATGAAGAACCTGATAGAGCTGTCACTCCTTCCCAGTGACACTGGGAGGCCAGATGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGAGGGCCAAAAAAGGAAAGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGCGAGCGCCATGAGTCTGAGAGCGAGCAGgtaattacccctccctgggcggcattgcctcatctcacccatcagtgttt Alignment from Exonerate_coding2genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGG-GAGCGCCAGGAGTCTGAGAGCGAGCAG atggtgcccagacacctctgccctctctgaccttccactctgtcctgcagTGTGAACCCCATGAAGAACCTGATAGAGCTGTCACTCCTTCCCAGTGACACTGGGAGGCCAGATGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGAGGGCCAAAAAAGGAAAGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGCGAGCGCCATGAGTCTGAGAGCGAGCAGgtaattacccctccctgggcggcattgcctcatctcacccatcagtgttt Alignment from GeneWise CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGG-GAGCGCCAGGAGTCTGAGAGCGAGCAG atggtgcccagacacctctgccctctctgaccttccactctgtcctgcagTGTGAACCCCATGAAGAACCTGATAGAGCTGTCACTCCTTCCCAGTGACACTGGGAGGCCAGATGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGAGGGCCAAAAAAGGAAAGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGCGAGCGCCATGAGTCTGAGAGCGAGCAGgtaattacccctccctgggcggcattgcctcatctcacccatcagtgttt #### Pdcd4_ID11402_9 --> 0 - 0 Original Alignment GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACT-ATTACCATAGACCAAATGAAAAGA cataagttgtttaccaaaagtttatttagacctctgcccttcccttctagGCCATTGTGATGGTTTTAGAGTCAACTGGAGAGAGTGCATTCAAGATGATCTTAGATTTATTTAAATCCTTGTGGAAGTCTTCTACACATTACCATAGACCAGATGAAACGAgtatctatgaaattattttgaatacgtttataaaaggtctatgcctcctc Alignment from CESAR GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACT-ATTACCATAGACCAAATGAAAAGA cataagttgtttaccaaaagtttatttagacctctgcccttcccttctagGCCATTGTGATGGTTTTAGAGTCAACTGGAGAGAGTGCATTCAAGATGATCTTAGATTTATTTAAATCCTTGTGGAAGTCTTCTACACATTACCATAGACCAGATGAAACGAgtatctatgaaattattttgaatacgtttataaaaggtctatgcctcctc Alignment from Spaln_aa2Genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACT-ATTACCATAGACCAAATGAAAAGA cataagttgtttaccaaaagtttatttagacctctgcccttcccttctagGCCATTGTGATGGTTTTAGAGTCAACTGGAGAGAGTGCATTCAAGATGATCTTAGATTTATTTAAATCCTTGTGGAAGTCTTCTACAcATTACCATAGACCAGATGAAACGAgtatctatgaaattattttgaatacgtttataaaaggtctatgcctcctc Alignment from Spaln_nt2Genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACT-ATTACCATAGACCAAATGAAAAGA cataagttgtttaccaaaagtttatttagacctctgcccttcccttctagGCCATTGTGATGGTTTTAGAGTCAACTGGAGAGAGTGCATTCAAGATGATCTTAGATTTATTTAAATCCTTGTGGAAGTCTTCTACACATTACCATAGACCAGATGAAACGAgtatctatgaaattattttgaatacgtttataaaaggtctatgcctcctc Alignment from Pairagon GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTAC-TATTACCATAGACCAAATGAAAAGA cataagttgtttaccaaaagtttatttagacctctgcccttcccttctagGCCATTGTGATGGTTTTAGAGTCAACTGGAGAGAGTGCATTCAAGATGATCTTAGATTTATTTAAATCCTTGTGGAAGTCTTCTACACATTACCATAGACCAGATGAAACGAgtatctatgaaattattttgaatacgtttataaaaggtctatgcctcctc Alignment from Exonerate_protein2genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACT-ATTACCATAGACCAAATGAAAAGA cataagttgtttaccaaaagtttatttagacctctgcccttcccttctagGCCATTGTGATGGTTTTAGAGTCAACTGGAGAGAGTGCATTCAAGATGATCTTAGATTTATTTAAATCCTTGTGGAAGTCTTCTACACATTACCATAGACCAGATGAAACGAgtatctatgaaattattttgaatacgtttataaaaggtctatgcctcctc Alignment from Exonerate_coding2genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACT-ATTACCATAGACCAAATGAAAAGA cataagttgtttaccaaaagtttatttagacctctgcccttcccttctagGCCATTGTGATGGTTTTAGAGTCAACTGGAGAGAGTGCATTCAAGATGATCTTAGATTTATTTAAATCCTTGTGGAAGTCTTCTACACATTACCATAGACCAGATGAAACGAgtatctatgaaattattttgaatacgtttataaaaggtctatgcctcctc Alignment from GeneWise GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACT-ATTACCATAGACCAAATGAAAAGA cataagttgtttaccaaaagtttatttagacctctgcccttcccttctagGCCATTGTGATGGTTTTAGAGTCAACTGGAGAGAGTGCATTCAAGATGATCTTAGATTTATTTAAATCCTTGTGGAAGTCTTCTACACATTACCATAGACCAGATGAAACGAgtatctatgaaattattttgaatacgtttataaaaggtctatgcctcctc #### Pde6c_ID7536_6 --> 0 - 2 Original Alignment GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAA-GAAGAGATCAACGTGATTcc ttattttctctgcaaattaatgttgtgtctttctctacatctccttgcagGAAATCATATTCTACAAAATCACCGATTACATTTTACATGGCAAACGAAGAAATCAACGTGATTccgtaaatgttccccggaagtagccacgggagttgcccctgagactttgaac Alignment from CESAR GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAA-GAAGAGATCAACGTGATTcc ttattttctctgcaaattaatgttgtgtctttctctacatctccttgcagGAAATCATATTCTACAAAATCACCGATTACATTTTACATGGCAAACGAAGAAATCAACGTGATTccgtaaatgttccccggaagtagccacgggagttgcccctgagactttgaac Alignment from Spaln_aa2Genome GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAA-GAAGAGATCAACGTGATTCC ttattttctctgcaaattaatgttgtgtctttctctacatctccttgcagGAAATCATATTCTACAAAATCACCGATTACATTTTACATGGCAAAcGAAGAAATCAACGTGATTCCgtaaatgttccccggaagtagccacgggagttgcccctgagactttgaac Alignment from Spaln_nt2Genome GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGA-AAAGAAGAGATCAACGTGATTCC ttattttctctgcaaattaatgttgtgtctttctctacatctccttgcagGAAATCATATTCTACAAAATCACCGATTACATTTTACATGGCAAACGAAGAAATCAACGTGATTCCgtaaatgttccccggaagtagccacgggagttgcccctgagactttgaac Alignment from Pairagon GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGG-AAAAGAAGAGATCAACGTGATTCC ttattttctctgcaaattaatgttgtgtctttctctacatctccttgcagGAAATCATATTCTACAAAATCACCGATTACATTTTACATGGCAAACGAAGAAATCAACGTGATTCCgtaaatgttccccggaagtagccacgggagttgcccctgagactttgaac Alignment from Exonerate_protein2genome GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAA-GAAGAGATCAACGTGATTCC ttattttctctgcaaattaatgttgtgtctttctctacatctccttgcagGAAATCATATTCTACAAAATCACCGATTACATTTTACATGGCAAACGAAGAAATCAACGTGATTCCgtaaatgttccccggaagtagccacgggagttgcccctgagactttgaac Alignment from Exonerate_coding2genome GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAA-GAAGAGATCAACGTGATTCC ttattttctctgcaaattaatgttgtgtctttctctacatctccttgcagGAAATCATATTCTACAAAATCACCGATTACATTTTACATGGCAAACGAAGAAATCAACGTGATTCCgtaaatgttccccggaagtagccacgggagttgcccctgagactttgaac Alignment from GeneWise GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAA---------------GAAGAGATCAACGTGATTCCG-- ttattttctctgcaaattaatgttgtgtctttctctacatctccttgcagGAAATCATATTCTACAAAATCACCGATTACATTTTACATGGCAAACGAAGAAATCAACGTGATTCCGTAAATGTTCCCCGGAAgtagccacgggagttgcccctgagactttgaac #### Pde6c_ID7543_13 --> 0 - 0 Original Alignment GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGA-TTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG cctgtgtcctgttctaaagtctgaatggttaactctagattctatcatagGTTCTTACAAGGTGGATGTACACAGTCCGAAAGGGGTACCGTCCTGCCACCTACCACAACTGGCGGCACGGACTTCAATGTGGGGCATACTATGTTCCCTTTGTTAATGgtaccaactgatgcaaaccattgaaagtctttgcaactctgaatactctc Alignment from CESAR GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGA-TTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG cctgtgtcctgttctaaagtctgaatggttaactctagattctatcatagGTTCTTACAAGGTGGATGTACACAGTCCGAAAGGGGTACCGTCCTGCCACCTACCACAACTGGCGGCACGGACTTCAATGTGGGGCATACTATGTTCCCTTTGTTAATGgtaccaactgatgcaaaccattgaaagtctttgcaactctgaatactctc Alignment from Spaln_aa2Genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGA-TTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG cctgtgtcctgttctaaagtctgaatggttaactctagattctatcatagGTTCTTACAAGGTGGATGTACACAGTCCGAAAGGGGTACCGTCCTGCCACCTACCACAACTGGCGGCACGGAcTTCAATGTGGGGCATACTATGTTCCCTTTGTTAATGgtaccaactgatgcaaaccattgaaagtctttgcaactctgaatactctc Alignment from Spaln_nt2Genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGA-TTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG cctgtgtcctgttctaaagtctgaatggttaactctagattctatcatagGTTCTTACAAGGTGGATGTACACAGTCCGAAAGGGGTACCGTCCTGCCACCTACCACAACTGGCGGCACGGACTTCAATGTGGGGCATACTATGTTCCCTTTGTTAATGgtaccaactgatgcaaaccattgaaagtctttgcaactctgaatactctc Alignment from Pairagon GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGA-TTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG cctgtgtcctgttctaaagtctgaatggttaactctagattctatcatagGTTCTTACAAGGTGGATGTACACAGTCCGAAAGGGGTACCGTCCTGCCACCTACCACAACTGGCGGCACGGACTTCAATGTGGGGCATACTATGTTCCCTTTGTTAATGgtaccaactgatgcaaaccattgaaagtctttgcaactctgaatactctc Alignment from Exonerate_protein2genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGA-TTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG cctgtgtcctgttctaaagtctgaatggttaactctagattctatcatagGTTCTTACAAGGTGGATGTACACAGTCCGAAAGGGGTACCGTCCTGCCACCTACCACAACTGGCGGCACGGACTTCAATGTGGGGCATACTATGTTCCCTTTGTTAATGgtaccaactgatgcaaaccattgaaagtctttgcaactctgaatactctc Alignment from Exonerate_coding2genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGA-TTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG cctgtgtcctgttctaaagtctgaatggttaactctagattctatcatagGTTCTTACAAGGTGGATGTACACAGTCCGAAAGGGGTACCGTCCTGCCACCTACCACAACTGGCGGCACGGACTTCAATGTGGGGCATACTATGTTCCCTTTGTTAATGgtaccaactgatgcaaaccattgaaagtctttgcaactctgaatactctc Alignment from GeneWise GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCAC-GGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG cctgtgtcctgttctaaagtctgaatggttaactctagattctatcatagGTTCTTACAAGGTGGATGTACACAGTCCGAAAGGGGTACCGTCCTGCCACCTACCACAACTGGCGGCACGGACTTCAATGTGGGGCATACTATGTTCCCTTTGTTAATGgtaccaactgatgcaaaccattgaaagtctttgcaactctgaatactctc #### Pga5_ID2974_4 --> 2 - 0 Original Alignment ctCACCACAAAGCCTTCAACCCGCTT-CGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG acctgttatcccagcacacctaaggttcttcttatgtttttctcacatagctCACCACAAAGCCTTCAACCCACTTCCGGTCTTCCACTTTCCTGATCTCAGGACGACCTGTGAATGTCGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGGgtgaggtgggaagcagaggctggctcggggctggctctgggtgagaacat Alignment from CESAR ctCACCACAAAGCCTTCAACCCGCTT-CGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG acctgttatcccagcacacctaaggttcttcttatgtttttctcacatagctCACCACAAAGCCTTCAACCCACTTCCGGTCTTCCACTTTCCTGATCTCAGGACGACCTGTGAATGTCGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGGgtgaggtgggaagcagaggctggctcggggctggctctgggtgagaacat Alignment from Spaln_aa2Genome CTCACCACAAAGCCTTCAACCCGCTT-CGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG acctgttatcccagcacacctaaggttcttcttatgtttttctcacatagCTCACCACAAAGCCTTCAACCCACTTcCGGTCTTCCACTTTCCTGATCTCAGGACGACCTGTGAATGTCGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGGgtgaggtgggaagcagaggctggctcggggctggctctgggtgagaacat Alignment from Spaln_nt2Genome CTCACCACAAAGCCTTCAACCCGCTTC-GGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG acctgttatcccagcacacctaaggttcttcttatgtttttctcacatagCTCACCACAAAGCCTTCAACCCACTTCCGGTCTTCCACTTTCCTGATCTCAGGACGACCTGTGAATGTCGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGGgtgaggtgggaagcagaggctggctcggggctggctctgggtgagaacat Alignment from Pairagon CTCACCACAAAGCCTTCAACCCGCTT-CGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG acctgttatcccagcacacctaaggttcttcttatgtttttctcacatagCTCACCACAAAGCCTTCAACCCACTTCCGGTCTTCCACTTTCCTGATCTCAGGACGACCTGTGAATGTCGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGGgtgaggtgggaagcagaggctggctcggggctggctctgggtgagaacat Alignment from Exonerate_protein2genome CTCACCACAAAGCCTTCAACCCGCTT-CGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG acctgttatcccagcacacctaaggttcttcttatgtttttctcacatagCTCACCACAAAGCCTTCAACCCACTTCCGGTCTTCCACTTTCCTGATCTCAGGACGACCTGTGAATGTCGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGGgtgaggtgggaagcagaggctggctcggggctggctctgggtgagaacat Alignment from Exonerate_coding2genome CTCACCACAAAGCCTTCAACCCGCTT-CGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG acctgttatcccagcacacctaaggttcttcttatgtttttctcacatagCTCACCACAAAGCCTTCAACCCACTTCCGGTCTTCCACTTTCCTGATCTCAGGACGACCTGTGAATGTCGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGGgtgaggtgggaagcagaggctggctcggggctggctctgggtgagaacat Alignment from GeneWise CTCACCACAAAGCCTTCAACCCG-CTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGG acctgttatcccagcacacctaaggttcttcttatgtttttctcacatagCTCACCACAAAGCCTTCAACCCACTTCCGGTCTTCCACTTTCCTGATCTCAGGACGACCTGTGAATGTCGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCCTATGACACTGTCAGGgtgaggtgggaagcagaggctggctcggggctggctctgggtgagaacat #### Pitpnm1_ID315_12 --> 0 - 2 Original Alignment AACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGT-GACATGGCCAATCCTGATCCTGATGGCTCTCAGAACag aaacagatggtctcaggcctaaggatgcgtacacatgtgtctttgtgcagAACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTACGAGACCCACTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGCACCTTCAGTCGACATGGCCAACCCTGACCCTGATGGCTCCCAGAACaggtatgagcttttcccaatagtccttgccctaaaaataggcttgacctcag Alignment from CESAR AACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGT-GACATGGCCAATCCTGATCCTGATGGCTCTCAGAACag aaacagatggtctcaggcctaaggatgcgtacacatgtgtctttgtgcagAACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTACGAGACCCACTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGCACCTTCAGTCGACATGGCCAACCCTGACCCTGATGGCTCCCAGAACaggtatgagcttttcccaatagtccttgccctaaaaataggcttgacctcag Alignment from Spaln_aa2Genome AACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGT-GACATGGCCAATCCTGATCCTGATGGCTCTCAGAACAG aaacagatggtctcaggcctaaggatgcgtacacatgtgtctttgtgcagAACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTACGAGACCCACTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGCACCTTCAGTcGACATGGCCAACCCTGACCCTGATGGCTCCCAGAACAGgtatgagcttttcccaatagtccttgccctaaaaataggcttgacctcag Alignment from Spaln_nt2Genome AACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGT-GACATGGCCAATCCTGATCCTGATGGCTCTCAGAACAG aaacagatggtctcaggcctaaggatgcgtacacatgtgtctttgtgcagAACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTACGAGACCCACTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGCACCTTCAGTCGACATGGCCAACCCTGACCCTGATGGCTCCCAGAACAGgtatgagcttttcccaatagtccttgccctaaaaataggcttgacctcag Alignment from Pairagon AACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGT-GACATGGCCAATCCTGATCCTGATGGCTCTCAGAACAG aaacagatggtctcaggcctaaggatgcgtacacatgtgtctttgtgcagAACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTACGAGACCCACTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGCACCTTCAGTCGACATGGCCAACCCTGACCCTGATGGCTCCCAGAACAGgtatgagcttttcccaatagtccttgccctaaaaataggcttgacctcag Alignment from Exonerate_protein2genome AACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGT-GACATGGCCAATCCTGATCCTGATGGCTCTCAGAACAG aaacagatggtctcaggcctaaggatgcgtacacatgtgtctttgtgcagAACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTACGAGACCCACTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGCACCTTCAGTCGACATGGCCAACCCTGACCCTGATGGCTCCCAGAACAGgtatgagcttttcccaatagtccttgccctaaaaataggcttgacctcag Alignment from Exonerate_coding2genome AACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGT-GACATGGCCAATCCTGATCCTGATGGCTCTCAGAACAG aaacagatggtctcaggcctaaggatgcgtacacatgtgtctttgtgcagAACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTACGAGACCCACTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGCACCTTCAGTCGACATGGCCAACCCTGACCCTGATGGCTCCCAGAACAGgtatgagcttttcccaatagtccttgccctaaaaataggcttgacctcag Alignment from GeneWise AACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTC-AGTGACATGGCCAATCCTGATCCTGATGGCTCTCAGAACAG aaacagatggtctcaggcctaaggatgcgtacacatgtgtctttgtgcagAACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTACGAGACCCACTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGCACCTTCAGTCGACATGGCCAACCCTGACCCTGATGGCTCCCAGAACAGgtatgagcttttcccaatagtccttgccctaaaaataggcttgacctcag #### Pitpnm1_ID318_15 --> 2 - 1 Original Alignment ctGACACTTTGCAAACCCATTCGAGTCTCTTCCTGGAAGAGCTG-GAGATGATGGTGCCCTCCACACCCACCTCGGCCAGTGGTGCCTTCTGGAAGGGCAGTGAACTAGGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGCACCACCAGCGAGGTTGTTAAGa agaagaggcatgggggcagtctgatccttaatatgtacttttttccttagctGAGACTTTGCAAACTCATTCAAGTCTCTTCCTGGAAGAGCTGCGAAATGATGGTGCCCTCCACACCCACCTCGGCCAGTGGTGCCTTCTGGAAGGGCAGTGAACTAGGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGTACCACCAGTGAGGTTGTTAAGagtaacacagccagcactgccttccactgtcagcctacctggaagcatgtc Alignment from CESAR ctGACACTTTGCAAACCCATTCGAGTCTCTTCCTGGAAGAGCTG-GAGATGATGGTGCCCTCCACACCCACCTCGGCCAGTGGTGCCTTCTGGAAGGGCAGTGAACTAGGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGCACCACCAGCGAGGTTGTTAAGa agaagaggcatgggggcagtctgatccttaatatgtacttttttccttagctGAGACTTTGCAAACTCATTCAAGTCTCTTCCTGGAAGAGCTGCGAAATGATGGTGCCCTCCACACCCACCTCGGCCAGTGGTGCCTTCTGGAAGGGCAGTGAACTAGGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGTACCACCAGTGAGGTTGTTAAGagtaacacagccagcactgccttccactgtcagcctacctggaagcatgtc Alignment from Spaln_aa2Genome CTGACACTTTGCAAACCCATTCGAGTCTCTTCCTGGAAGAGCTG-GAGATGATGGTGCCCTCCACACCCACCTCGGCCAGTGGTGCCTTCTGGAAGGGCAGTGAACTAGGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGCACCACCAGCGAGGTTGTTAAGA agaagaggcatgggggcagtctgatccttaatatgtacttttttccttagCTGAGACTTTGCAAACTCATTCAAGTCTCTTCCTGGAAGAGCTGcGAAATGATGGTGCCCTCCACACCCACCTCGGCCAGTGGTGCCTTCTGGAAGGGCAGTGAACTAGGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGTACCACCAGTGAGGTTGTTAAGAgtaacacagccagcactgccttccactgtcagcctacctggaagcatgtc Alignment from Spaln_nt2Genome CTGACACTTTGCAAACCCATTCGAGTCTCTTCCTGGAAGAGCTG-GAGATGATGGTGCCCTCCACACCCACCTCGGCCAGTGGTGCCTTCTGGAAGGGCAGTGAACTAGGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGCACCACCAGCGAGGTTGTTAAGA agaagaggcatgggggcagtctgatccttaatatgtacttttttccttagCTGAGACTTTGCAAACTCATTCAAGTCTCTTCCTGGAAGAGCTGCGAAATGATGGTGCCCTCCACACCCACCTCGGCCAGTGGTGCCTTCTGGAAGGGCAGTGAACTAGGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGTACCACCAGTGAGGTTGTTAAGAgtaacacagccagcactgccttccactgtcagcctacctggaagcatgtc Alignment from Pairagon CTGACACTTTGCAAACCCATTCGAGTCTCTTCCTGGAAGAGCTG-GAGATGATGGTGCCCTCCACACCCACCTCGGCCAGTGGTGCCTTCTGGAAGGGCAGTGAACTAGGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGCACCACCAGCGAGGTTGTTAAGA agaagaggcatgggggcagtctgatccttaatatgtacttttttccttagCTGAGACTTTGCAAACTCATTCAAGTCTCTTCCTGGAAGAGCTGCGAAATGATGGTGCCCTCCACACCCACCTCGGCCAGTGGTGCCTTCTGGAAGGGCAGTGAACTAGGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGTACCACCAGTGAGGTTGTTAAGAgtaacacagccagcactgccttccactgtcagcctacctggaagcatgtc Alignment from Exonerate_protein2genome CTGACACTTTGCAAACCCATTCGAGTCTCTTCCTGGAAGAGCTG-GAGATGATGGTGCCCTCCACACCCACCTCGGCCAGTGGTGCCTTCTGGAAGGGCAGTGAACTAGGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGCACCACCAGCGAGGTTGTTAAGA agaagaggcatgggggcagtctgatccttaatatgtacttttttccttagCTGAGACTTTGCAAACTCATTCAAGTCTCTTCCTGGAAGAGCTGCGAAATGATGGTGCCCTCCACACCCACCTCGGCCAGTGGTGCCTTCTGGAAGGGCAGTGAACTAGGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGTACCACCAGTGAGGTTGTTAAGAgtaacacagccagcactgccttccactgtcagcctacctggaagcatgtc Alignment from Exonerate_coding2genome CTGACACTTTGCAAACCCATTCGAGTCTCTTCCTGGAAGAGCTG-GAGATGATGGTGCCCTCCACACCCACCTCGGCCAGTGGTGCCTTCTGGAAGGGCAGTGAACTAGGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGCACCACCAGCGAGGTTGTTAAGA agaagaggcatgggggcagtctgatccttaatatgtacttttttccttagCTGAGACTTTGCAAACTCATTCAAGTCTCTTCCTGGAAGAGCTGCGAAATGATGGTGCCCTCCACACCCACCTCGGCCAGTGGTGCCTTCTGGAAGGGCAGTGAACTAGGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGTACCACCAGTGAGGTTGTTAAGAgtaacacagccagcactgccttccactgtcagcctacctggaagcatgtc Alignment from GeneWise CTGACACTTTGCAAACCCATTCGAGTCTCTTCCTGGAAGAG-CTGGAGATGATGGTGCCCTCCACACCCACCTCGGCCAGTGGTGCCTTCTGGAAGGGCAGTGAACTAGGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGCACCACCAGCGAGGTTGTTAAGA agaagaggcatgggggcagtctgatccttaatatgtacttttttccttagCTGAGACTTTGCAAACTCATTCAAGTCTCTTCCTGGAAGAGCTGCGAAATGATGGTGCCCTCCACACCCACCTCGGCCAGTGGTGCCTTCTGGAAGGGCAGTGAACTAGGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGTACCACCAGTGAGGTTGTTAAGAgtaacacagccagcactgccttccactgtcagcctacctggaagcatgtc #### Pitpnm1_ID320_17 --> 0 - 0 Original Alignment GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTAT-AGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG ttagagctgtatacgggtggaggttgttccaatgtctttttatttggcagGTTATTGAGAAGGAGCGGCCACAACTGACAGAGTGTGAGGAGCCATCCATCTATCAGCCCTGCCTTCCCTAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGGgtaagtgtctggctgtcatgaaccagcccgagtatgtccccagcatgctc Alignment from CESAR GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTAT-AGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG ttagagctgtatacgggtggaggttgttccaatgtctttttatttggcagGTTATTGAGAAGGAGCGGCCACAACTGACAGAGTGTGAGGAGCCATCCATCTATCAGCCCTGCCTTCCCTAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGGgtaagtgtctggctgtcatgaaccagcccgagtatgtccccagcatgctc Alignment from Spaln_aa2Genome GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGC-CCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG ttagagctgtatacgggtggaggttgttccaatgtctttttatttggcagGTTATTGAGAAGGAGCGGCCACAACTGACAGAGTGTGAGGAGCCATCCATCTATCAGcCCTGCCTTCCCTAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGGgtaagtgtctggctgtcatgaaccagcccgagtatgtccccagcatgctc Alignment from Spaln_nt2Genome GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTAT-AGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG ttagagctgtatacgggtggaggttgttccaatgtctttttatttggcagGTTATTGAGAAGGAGCGGCCACAACTGACAGAGTGTGAGGAGCCATCCATCTATCAGCCCTGCCTTCCCTAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGGgtaagtgtctggctgtcatgaaccagcccgagtatgtccccagcatgctc Alignment from Pairagon GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTAT-AGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG ttagagctgtatacgggtggaggttgttccaatgtctttttatttggcagGTTATTGAGAAGGAGCGGCCACAACTGACAGAGTGTGAGGAGCCATCCATCTATCAGCCCTGCCTTCCCTAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGGgtaagtgtctggctgtcatgaaccagcccgagtatgtccccagcatgctc Alignment from Exonerate_protein2genome GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTAT-AGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG ttagagctgtatacgggtggaggttgttccaatgtctttttatttggcagGTTATTGAGAAGGAGCGGCCACAACTGACAGAGTGTGAGGAGCCATCCATCTATCAGCCCTGCCTTCCCTAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGGgtaagtgtctggctgtcatgaaccagcccgagtatgtccccagcatgctc Alignment from Exonerate_coding2genome GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTAT-AGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG ttagagctgtatacgggtggaggttgttccaatgtctttttatttggcagGTTATTGAGAAGGAGCGGCCACAACTGACAGAGTGTGAGGAGCCATCCATCTATCAGCCCTGCCTTCCCTAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGGgtaagtgtctggctgtcatgaaccagcccgagtatgtccccagcatgctc Alignment from GeneWise GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTAT-AGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG ttagagctgtatacgggtggaggttgttccaatgtctttttatttggcagGTTATTGAGAAGGAGCGGCCACAACTGACAGAGTGTGAGGAGCCATCCATCTATCAGCCCTGCCTTCCCTAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGGgtaagtgtctggctgtcatgaaccagcccgagtatgtccccagcatgctc #### Pitpnm1_ID321_18 --> 0 - 0 Original Alignment AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTG-GATGTGGTCACGCTCACTGGAGAGAAG ccataaatatgcatcctttccagtcccagcttgtgttgattccccttcagAACGTCACTTCCAACCACCGGGCGAGTGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGCTCAATGGGCACTTCATGTATGGACCATTGCGATGTGGTCACACTCACTGGAGAGAAGgtttgtacccagcatccatgctcctggtgattcctaccctgccctaatag Alignment from CESAR AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTG-GATGTGGTCACGCTCACTGGAGAGAAG ccataaatatgcatcctttccagtcccagcttgtgttgattccccttcagAACGTCACTTCCAACCACCGGGCGAGTGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGCTCAATGGGCACTTCATGTATGGACCATTGCGATGTGGTCACACTCACTGGAGAGAAGgtttgtacccagcatccatgctcctggtgattcctaccctgccctaatag Alignment from Spaln_aa2Genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTG-GATGTGGTCACGCTCACTGGAGAGAAG ccataaatatgcatcctttccagtcccagcttgtgttgattccccttcagAACGTCACTTCCAACCACCGGGCGAGTGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGCTCAATGGGCACTTCATGTATGGACCATTGcGATGTGGTCACACTCACTGGAGAGAAGgtttgtacccagcatccatgctcctggtgattcctaccctgccctaatag Alignment from Spaln_nt2Genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTG-GATGTGGTCACGCTCACTGGAGAGAAG ccataaatatgcatcctttccagtcccagcttgtgttgattccccttcagAACGTCACTTCCAACCACCGGGCGAGTGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGCTCAATGGGCACTTCATGTATGGACCATTGCGATGTGGTCACACTCACTGGAGAGAAGgtttgtacccagcatccatgctcctggtgattcctaccctgccctaatag Alignment from Pairagon AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTG-GATGTGGTCACGCTCACTGGAGAGAAG ccataaatatgcatcctttccagtcccagcttgtgttgattccccttcagAACGTCACTTCCAACCACCGGGCGAGTGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGCTCAATGGGCACTTCATGTATGGACCATTGCGATGTGGTCACACTCACTGGAGAGAAGgtttgtacccagcatccatgctcctggtgattcctaccctgccctaatag Alignment from Exonerate_protein2genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTG-GATGTGGTCACGCTCACTGGAGAGAAG ccataaatatgcatcctttccagtcccagcttgtgttgattccccttcagAACGTCACTTCCAACCACCGGGCGAGTGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGCTCAATGGGCACTTCATGTATGGACCATTGCGATGTGGTCACACTCACTGGAGAGAAGgtttgtacccagcatccatgctcctggtgattcctaccctgccctaatag Alignment from Exonerate_coding2genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGA---TGTGGTCACGCTCACTGGAGAGAAG ccataaatatgcatcctttccagtcccagcttgtgttgattccccttcagAACGTCACTTCCAACCACCGGGCGAGTGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGCTCAATGGGCACTTCATGTATGGACCATTG--CGATGTGGTCACACTCACTGGAGAGAAGgtttgtacccagcatccatgctcctggtgattcctaccctgccctaatag Alignment from GeneWise AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCA-TTGGATGTGGTCACGCTCACTGGAGAGAAG ccataaatatgcatcctttccagtcccagcttgtgttgattccccttcagAACGTCACTTCCAACCACCGGGCGAGTGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGCTCAATGGGCACTTCATGTATGGACCATTGCGATGTGGTCACACTCACTGGAGAGAAGgtttgtacccagcatccatgctcctggtgattcctaccctgccctaatag #### Pitpnm1_ID324_21 --> 1 - 0 Original Alignment gCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGC-CTGGTGCAAGAG agcaacttgtcatccctgtggactggagaattctttcttttacttcacaggCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGATATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCACAACACACCTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCATGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCCTGGTGCAAGAGgcaagttggcttaggatggtcctaacctgccctcaccacattccacacca Alignment from CESAR gCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGC-CTGGTGCAAGAG agcaacttgtcatccctgtggactggagaattctttcttttacttcacaggCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGATATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCACAACACACCTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCATGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCCTGGTGCAAGAGgcaagttggcttaggatggtcctaacctgccctcaccacattccacacca Alignment from Spaln_aa2Genome GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG agcaacttgtcatccctgtggactggagaattctttcttttacttcacagGCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGATATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCACAACACACCTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCATGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGC------CCTGGTgcaagaggcaagttggcttaggatggtcctaacctgccctcaccacattccacacca Alignment from Spaln_nt2Genome GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCC-TGGTGCAAGAG agcaacttgtcatccctgtggactggagaattctttcttttacttcacagGCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGATATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCACAACACACCTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCATGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCCTGGTGCAAGAGgcaagttggcttaggatggtcctaacctgccctcaccacattccacacca Alignment from Pairagon GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAG-CCTGGTGCAAGAG agcaacttgtcatccctgtggactggagaattctttcttttacttcacagGCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGATATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCACAACACACCTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCATGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCCTGGTGCAAGAGgcaagttggcttaggatggtcctaacctgccctcaccacattccacacca Alignment from Exonerate_protein2genome GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGC-CTGGTGCAAGAG agcaacttgtcatccctgtggactggagaattctttcttttacttcacagGCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGATATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCACAACACACCTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCATGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCCTGGTGCAAGAGgcaagttggcttaggatggtcctaacctgccctcaccacattccacacca Alignment from Exonerate_coding2genome GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAG---CCTGGTGCAAGAG agcaacttgtcatccctgtggactggagaattctttcttttacttcacagGCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGATATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCACAACACACCTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCATGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAG--AGCCCTGGTGCAAGAGgcaagttggcttaggatggtcctaacctgccctcaccacattccacacca Alignment from GeneWise GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAGGTAG agcaacttgtcatccctgtggactggagaattctttcttttacttcacagGCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTAACTGGCCGGCCTGATATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCACAACACACCTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCATGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGC------------CCTGgtgcaagaggcaagttggcttaggatggtcctaacctgccctcaccacattccacacca #### Pkd2l1_ID8954_14 --> 1 - 0 Original Alignment gCTCACAAGGAGAGTTCTGCAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAG-CTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG acacccagacaccattttagcttccttgattttgaatcatcacattgcaggCTCACAAGGAGAGTTTTGCAGCTGCAATGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCTAAGCCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATGgtgagtgccctccagtttggcccacggagttctctactactggagtccat Alignment from CESAR gCTCACAAGGAGAGTTCTGCAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAG-CTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG acacccagacaccattttagcttccttgattttgaatcatcacattgcaggCTCACAAGGAGAGTTTTGCAGCTGCAATGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCTAAGCCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATGgtgagtgccctccagtttggcccacggagttctctactactggagtccat Alignment from Spaln_aa2Genome GCTCACAAGGAGAGTTCTGCAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAG-CTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG acacccagacaccattttagcttccttgattttgaatcatcacattgcagGCTCACAAGGAGAGTTTTGCAGCTGCAATGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCTAAGcCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATGgtgagtgccctccagtttggcccacggagttctctactactggagtccat Alignment from Spaln_nt2Genome GCTCACAAGGAGAGTTCTGCAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCA-AAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG acacccagacaccattttagcttccttgattttgaatcatcacattgcagGCTCACAAGGAGAGTTTTGCAGCTGCAATGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCTAAGCCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATGgtgagtgccctccagtttggcccacggagttctctactactggagtccat Alignment from Pairagon GCTCACAAGGAGAGTTCTGCAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAG-CTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG acacccagacaccattttagcttccttgattttgaatcatcacattgcagGCTCACAAGGAGAGTTTTGCAGCTGCAATGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCTAAGCCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATGgtgagtgccctccagtttggcccacggagttctctactactggagtccat Alignment from Exonerate_protein2genome GCTCACAAGGAGAGTTCTGCAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAG-CTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG acacccagacaccattttagcttccttgattttgaatcatcacattgcagGCTCACAAGGAGAGTTTTGCAGCTGCAATGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCTAAGCCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATGgtgagtgccctccagtttggcccacggagttctctactactggagtccat Alignment from Exonerate_coding2genome GCTCACAAGGAGAGTTCTGCAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTC-AAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG acacccagacaccattttagcttccttgattttgaatcatcacattgcagGCTCACAAGGAGAGTTTTGCAGCTGCAATGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCTAAGCCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATGgtgagtgccctccagtttggcccacggagttctctactactggagtccat Alignment from GeneWise GCTCACAAGGAGAGTTCTGCAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAG-CTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG acacccagacaccattttagcttccttgattttgaatcatcacattgcagGCTCACAAGGAGAGTTTTGCAGCTGCAATGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCTAAGCCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATGgtgagtgccctccagtttggcccacggagttctctactactggagtccat #### Pkd2l1_ID8960_8 --> 0 - 2 Original Alignment ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTC-TTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCat ccttcctggagtagtctattccttgactctccatcccctcctcccctcagATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCatgtatgcgctctacccctaccattttaggtccctcatcctccagatcccag Alignment from CESAR ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTC-TTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCat ccttcctggagtagtctattccttgactctccatcccctcctcccctcagATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCatgtatgcgctctacccctaccattttaggtccctcatcctccagatcccag Alignment from Spaln_aa2Genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTC-TTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT ccttcctggagtagtctattccttgactctccatcccctcctcccctcagATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCcTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCATgtatgcgctctacccctaccattttaggtccctcatcctccagatcccag Alignment from Spaln_nt2Genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTT-CTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT ccttcctggagtagtctattccttgactctccatcccctcctcccctcagATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCATgtatgcgctctacccctaccattttaggtccctcatcctccagatcccag Alignment from Pairagon ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTT-CTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT ccttcctggagtagtctattccttgactctccatcccctcctcccctcagATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCATgtatgcgctctacccctaccattttaggtccctcatcctccagatcccag Alignment from Exonerate_protein2genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTC-TTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT ccttcctggagtagtctattccttgactctccatcccctcctcccctcagATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCATgtatgcgctctacccctaccattttaggtccctcatcctccagatcccag Alignment from Exonerate_coding2genome ATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTT-CTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT ccttcctggagtagtctattccttgactctccatcccctcctcccctcagatATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCATgtatgcgctctacccctaccattttaggtccctcatcctccagatcccag Alignment from GeneWise ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTC-TTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT ccttcctggagtagtctattccttgactctccatcccctcctcccctcagATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCATgtatgcgctctacccctaccattttaggtccctcatcctccagatcccag #### Plcb3_ID1902_29 --> 1 - 0 Original Alignment gGAACTGACAGAGATTAATCGGCGGCAC-ATCACTGAGTCGGTAAACTCCATCAGACGG gggacgcagggacagagcttagccctgacttggccttttcctctgcccaggGAACTGACAGAGATTAATCGGCGGCACCATCACTGAATCGGTAAACTCCAACAGACGGgtaagagagccccacctctctttcaccagcaggagctcagctttacagtg Alignment from CESAR gGAACTGACAGAGATTAATCGGCGGCAC-ATCACTGAGTCGGTAAACTCCATCAGACGG gggacgcagggacagagcttagccctgacttggccttttcctctgcccaggGAACTGACAGAGATTAATCGGCGGCACCATCACTGAATCGGTAAACTCCAACAGACGGgtaagagagccccacctctctttcaccagcaggagctcagctttacagtg Alignment from Spaln_aa2Genome GGAACTGACAGAGATTAATCGGCGGCAC-ATCACTGAGTCGGTAAACTCCATCAGACGG gggacgcagggacagagcttagccctgacttggccttttcctctgcccagGGAACTGACAGAGATTAATCGGCGGCACcATCACTGAATCGGTAAACTCCAACAGACGGgtaagagagccccacctctctttcaccagcaggagctcagctttacagtg Alignment from Spaln_nt2Genome GGAACTGACAGAGATTAATCGGCGGCA-CATCACTGAGTCGGTAAACTCCATCAGACGG gggacgcagggacagagcttagccctgacttggccttttcctctgcccagGGAACTGACAGAGATTAATCGGCGGCACCATCACTGAATCGGTAAACTCCAACAGACGGgtaagagagccccacctctctttcaccagcaggagctcagctttacagtg Alignment from Pairagon GGAACTGACAGAGATTAATCGGCGGCA-CATCACTGAGTCGGTAAACTCCATCAGACGG gggacgcagggacagagcttagccctgacttggccttttcctctgcccagGGAACTGACAGAGATTAATCGGCGGCACCATCACTGAATCGGTAAACTCCAACAGACGGgtaagagagccccacctctctttcaccagcaggagctcagctttacagtg Alignment from Exonerate_protein2genome GGAACTGACAGAGATTAATCGGCGGCAC-ATCACTGAGTCGGTAAACTCCATCAGACGG gggacgcagggacagagcttagccctgacttggccttttcctctgcccagGGAACTGACAGAGATTAATCGGCGGCACCATCACTGAATCGGTAAACTCCAACAGACGGgtaagagagccccacctctctttcaccagcaggagctcagctttacagtg Alignment from Exonerate_coding2genome T Gggacgcagggacagagcttagccctgacttggccttttcctctgcccagggaactgacagagattaatcggcggcaccatcactgaatcggtaaactccaacagacgggtaagagagccccacctctctttcaccagcaggagctcagctttacagtg Alignment from GeneWise GGAACTGACAGAGATTAATCGGCGGCAC-ATCACTGAGTCGGTAAACTCCATCAGACGG gggacgcagggacagagcttagccctgacttggccttttcctctgcccagGGAACTGACAGAGATTAATCGGCGGCACCATCACTGAATCGGTAAACTCCAACAGACGGgtaagagagccccacctctctttcaccagcaggagctcagctttacagtg #### Plcb3_ID1903_28 --> 1 - 2 Original Alignment gGAGAAGAAGGAA-CTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAG---------------gt gtgaccatcgtccaacctctgagtctcccttcataactactttttcttaggGAGAAGAAGGAACCTCCAGAAGATCCTGGATAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAAGTGTATGGCCACTGGgtgtgagaccactgagtgaggggacgcagggacagagcttagccctgatgcc Alignment from CESAR gGAGAAGAAGGAA-CTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGgt gtgaccatcgtccaacctctgagtctcccttcataactactttttcttaggGAGAAGAAGGAACCTCCAGAAGATCCTGGATAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAAgtgtatggccactgggtgtgagaccactgagtgaggggacgcagggacagagcttagccctgacttg Alignment from Spaln_aa2Genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT gtgaccatcgtccaacctctgagtctcccttcataactactttttcttagggagA---AGAAGGAACCTCCAGAAGATCCTGGATAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAAGTgtatggccactgggtgtgagaccactgagtgaggggacgcagggacagagcttagccctgatgcc Alignment from Spaln_nt2Genome GGAGAAGAAGGAA-CTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT gtgaccatcgtccaacctctgagtctcccttcataactactttttcttagGGAGAAGAAGGAACCTCCAGAAGATCCTGGATAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAAGTgtatggccactgggtgtgagaccactgagtgaggggacgcagggacagagcttagccctgatgcc Alignment from Pairagon GGAGAAGAAGGAA-CTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT gtgaccatcgtccaacctctgagtctcccttcataactactttttcttagGGAGAAGAAGGAACCTCCAGAAGATCCTGGATAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAAGTgtatggccactgggtgtgagaccactgagtgaggggacgcagggacagagcttagccctgatgcc Alignment from Exonerate_protein2genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT gtgaccatcgtccaacctctgagtctcccttcataactactttttcttaggGAGAAGAAGGAACCTCCAGAAGATCCTGGATAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAAGTgtatggccactgggtgtgagaccactgagtgaggggacgcagggacagagcttagccctgatgcc Alignment from Exonerate_coding2genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT gtgaccatcgtccaacctctgagtctcccttcataactactttttcttagggAGAAGAA-GGAACCTCCAGAAGATCCTGGATAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAAGTgtatggccactgggtgtgagaccactgagtgaggggacgcagggacagagcttagccctgatgcc Alignment from GeneWise GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT gtgaccatcgtccaacctctgagtctcccttcataactactttttcttagggagA---AGAAGGAACCTCCAGAAGATCCTGGATAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAAGTgtatggccactgggtgtgagaccactgagtgaggggacgcagggacagagcttagccctgatgcc #### Plcb3_ID1904_27 --> 0 - 2 Original Alignment GCTCATCAGCGGCTCAAGGAGGTT-GTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAag gctctcccatcagccccatattacctgcgcatatttttctgtccccacagGCTCATCAGCGGGTCAAGGAGGTTCGTCCTGGATACACACACAACCCAGTTCAAGAGGCTAAAGGAGTTGAATGAAaggtgagtacagatagaaggtcctgggtgagggtgggggactctggtgacca Alignment from CESAR GCTCATCAGCGGCTCAAGGAGGTT-GTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAag gctctcccatcagccccatattacctgcgcatatttttctgtccccacagGCTCATCAGCGGGTCAAGGAGGTTCGTCCTGGATACACACACAACCCAGTTCAAGAGGCTAAAGGAGTTGAATGAAaggtgagtacagatagaaggtcctgggtgagggtgggggactctggtgacca Alignment from Spaln_aa2Genome GCTCATCAGCGGCTCAAGGAGGTT-GTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG gctctcccatcagccccatattacctgcgcatatttttctgtccccacagGCTCATCAGCGGGTCAAGGAGGTTcGTCCTGGATACACACACAACCCAGTTCAAGAGGCTAAAGGAGTTGAATGAAAGgtgagtacagatagaaggtcctgggtgagggtgggggactctggtgacca Alignment from Spaln_nt2Genome GCTCATCAGCGGCTCAAGGAGGTT-GTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG gctctcccatcagccccatattacctgcgcatatttttctgtccccacagGCTCATCAGCGGGTCAAGGAGGTTCGTCCTGGATACACACACAACCCAGTTCAAGAGGCTAAAGGAGTTGAATGAAAGgtgagtacagatagaaggtcctgggtgagggtgggggactctggtgacca Alignment from Pairagon GCTCATCAGCGGCTCAAGGAGGTT-GTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG gctctcccatcagccccatattacctgcgcatatttttctgtccccacagGCTCATCAGCGGGTCAAGGAGGTTCGTCCTGGATACACACACAACCCAGTTCAAGAGGCTAAAGGAGTTGAATGAAAGgtgagtacagatagaaggtcctgggtgagggtgggggactctggtgacca Alignment from Exonerate_protein2genome GCTCATCAGCGGCTCAAGGAGGTT-GTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG gctctcccatcagccccatattacctgcgcatatttttctgtccccacagGCTCATCAGCGGGTCAAGGAGGTTCGTCCTGGATACACACACAACCCAGTTCAAGAGGCTAAAGGAGTTGAATGAAAGgtgagtacagatagaaggtcctgggtgagggtgggggactctggtgacca Alignment from Exonerate_coding2genome GCTCATCAGCGGCTCAAGGAGGTT-GTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG gctctcccatcagccccatattacctgcgcatatttttctgtccccacagGCTCATCAGCGGGTCAAGGAGGTTCGTCCTGGATACACACACAACCCAGTTCAAGAGGCTAAAGGAGTTGAATGAAAGgtgagtacagatagaaggtcctgggtgagggtgggggactctggtgacca Alignment from GeneWise GCTCATCAGCGGCTCAAGGAGGTT-GTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG gctctcccatcagccccatattacctgcgcatatttttctgtccccacagGCTCATCAGCGGGTCAAGGAGGTTCGTCCTGGATACACACACAACCCAGTTCAAGAGGCTAAAGGAGTTGAATGAAAGgtgagtacagatagaaggtcctgggtgagggtgggggactctggtgacca #### Plcb3_ID1905_26 --> 1 - 0 Original Alignment gGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAA-GCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ctaactgtcctgctctaccagagatctgtagaatgtacttggttttgcagaGGCAAGGCCACCAACTCAGAGGATGTGAAGGAGGAAGAGGAAGCCAAACAGTATCGAGAGTTCCAGAACCAAAAAGTACAGAGCCTGTTGGAGCTGAGGGAACGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAACATCTACGACAGgtaagagacaggtgaggggcatgtgatacaggggacaagggccagcttcc Alignment from CESAR gGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAA-GCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ctaactgtcctgctctaccagagatctgtagaatgtacttggttttgcagaGGCAAGGCCACCAACTCAGAGGATGTGAAGGAGGAAGAGGAAGCCAAACAGTATCGAGAGTTCCAGAACCAAAAAGTACAGAGCCTGTTGGAGCTGAGGGAACGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAACATCTACGACAGgtaagagacaggtgaggggcatgtgatacaggggacaagggccagcttcc Alignment from Spaln_aa2Genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAA-GCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ctaactgtcctgctctaccagagatctgtagaatgtacttggttttgcagAGGCAAGGCCACCAACTCAGAGGATGTGAAGGAGGAAGAGGAAGCCAAACAGTATCGAGAGTTCCAGAACCAAAAAGTACAGAGCCTGTTGGAGCTGAGGGAAcGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAACATCTACGACAGgtaagagacaggtgaggggcatgtgatacaggggacaagggccagcttcc Alignment from Spaln_nt2Genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAA-GCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ctaactgtcctgctctaccagagatctgtagaatgtacttggttttgcagAGGCAAGGCCACCAACTCAGAGGATGTGAAGGAGGAAGAGGAAGCCAAACAGTATCGAGAGTTCCAGAACCAAAAAGTACAGAGCCTGTTGGAGCTGAGGGAACGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAACATCTACGACAGgtaagagacaggtgaggggcatgtgatacaggggacaagggccagcttcc Alignment from Pairagon GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAA-GCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ctaactgtcctgctctaccagagatctgtagaatgtacttggttttgcagAGGCAAGGCCACCAACTCAGAGGATGTGAAGGAGGAAGAGGAAGCCAAACAGTATCGAGAGTTCCAGAACCAAAAAGTACAGAGCCTGTTGGAGCTGAGGGAACGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAACATCTACGACAGgtaagagacaggtgaggggcatgtgatacaggggacaagggccagcttcc Alignment from Exonerate_protein2genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAA-GCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ctaactgtcctgctctaccagagatctgtagaatgtacttggttttgcagAGGCAAGGCCACCAACTCAGAGGATGTGAAGGAGGAAGAGGAAGCCAAACAGTATCGAGAGTTCCAGAACCAAAAAGTACAGAGCCTGTTGGAGCTGAGGGAACGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAACATCTACGACAGgtaagagacaggtgaggggcatgtgatacaggggacaagggccagcttcc Alignment from Exonerate_coding2genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAA-GCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ctaactgtcctgctctaccagagatctgtagaatgtacttggttttgcagAGGCAAGGCCACCAACTCAGAGGATGTGAAGGAGGAAGAGGAAGCCAAACAGTATCGAGAGTTCCAGAACCAAAAAGTACAGAGCCTGTTGGAGCTGAGGGAACGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAACATCTACGACAGgtaagagacaggtgaggggcatgtgatacaggggacaagggccagcttcc Alignment from GeneWise GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAA-GCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ctaactgtcctgctctaccagagatctgtagaatgtacttggttttgcagAGGCAAGGCCACCAACTCAGAGGATGTGAAGGAGGAAGAGGAAGCCAAACAGTATCGAGAGTTCCAGAACCAAAAAGTACAGAGCCTGTTGGAGCTGAGGGAACGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAACATCTACGACAGgtaagagacaggtgaggggcatgtgatacaggggacaagggccagcttcc #### Plcb3_ID1906_25 --> 2 - 2 Original Alignment agGTGACCCCTACACCTCTAGAGGAG-CTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCct gcccaccccaacagctacagctaacctggcatgggtctcccctcactcagagGTGACCCCTACACCTCTAGAAGAGCCTCAGAAGCCACAAGGCTATGGTGAAGCTTCGGAGCCGGCAGGATCAAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGTAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCctgtaaaggtcctgcaacctgttgctacttgtgctgtgtactgacaggaata Alignment from CESAR agGTGACCCCTACACCTCTAGAGGAG-CTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCct gcccaccccaacagctacagctaacctggcatgggtctcccctcactcagagGTGACCCCTACACCTCTAGAAGAGCCTCAGAAGCCACAAGGCTATGGTGAAGCTTCGGAGCCGGCAGGATCAAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGTAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCctgtaaaggtcctgcaacctgttgctacttgtgctgtgtactgacaggaata Alignment from Spaln_aa2Genome AGGTGACCCCTACACCTCTAGAGGAG-CTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT gcccaccccaacagctacagctaacctggcatgggtctcccctcactcagAGGTGACCCCTACACCTCTAGAAGAGcCTCAGAAGCCACAAGGCTATGGTGAAGCTTCGGAGCCGGCAGGATCAAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGTAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCTgtaaaggtcctgcaacctgttgctacttgtgctgtgtactgacaggaata Alignment from Spaln_nt2Genome AGGTGACCCCTACACCTCTAGAGGAGC-TCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT gcccaccccaacagctacagctaacctggcatgggtctcccctcactcagAGGTGACCCCTACACCTCTAGAAGAGCCTCAGAAGCCACAAGGCTATGGTGAAGCTTCGGAGCCGGCAGGATCAAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGTAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCTgtaaaggtcctgcaacctgttgctacttgtgctgtgtactgacaggaata Alignment from Pairagon AGGTGACCCCTACACCTCTAGAGGAG-CTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT gcccaccccaacagctacagctaacctggcatgggtctcccctcactcagAGGTGACCCCTACACCTCTAGAAGAGCCTCAGAAGCCACAAGGCTATGGTGAAGCTTCGGAGCCGGCAGGATCAAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGTAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCTgtaaaggtcctgcaacctgttgctacttgtgctgtgtactgacaggaata Alignment from Exonerate_protein2genome AGGTGACCCCTACACCTCTAGAGGAG-CTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT gcccaccccaacagctacagctaacctggcatgggtctcccctcactcagAGGTGACCCCTACACCTCTAGAAGAGCCTCAGAAGCCACAAGGCTATGGTGAAGCTTCGGAGCCGGCAGGATCAAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGTAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCTgtaaaggtcctgcaacctgttgctacttgtgctgtgtactgacaggaata Alignment from Exonerate_coding2genome AGGTGACCCCTACACCTCTAGAGGAG-CTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT gcccaccccaacagctacagctaacctggcatgggtctcccctcactcagAGGTGACCCCTACACCTCTAGAAGAGCCTCAGAAGCCACAAGGCTATGGTGAAGCTTCGGAGCCGGCAGGATCAAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGTAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCTgtaaaggtcctgcaacctgttgctacttgtgctgtgtactgacaggaata Alignment from GeneWise GGCAGCGAGATGATTTGATTGCCAGCATCCTCTCTGAGGTGACCCCTACACCTCTAGAGGAG-CTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT gcccaccccaacagCTACAGCTAACCTGGCATGGGTCTCCCCTCACTCAGAGGTGACCCCTACACCTCTAGAAGAGCCTCAGAAGCCACAAGGCTATGGTGAAGCTTCGGAGCCGGCAGGATCAAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGTAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCTgtaaaggtcctgcaacctgttgctacttgtgctgtgtactgacaggaata #### Plcb3_ID1911_20 --> 0 - 1 Original Alignment GTTGTGCTGCCCACGCTGGCC-TCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAg cctgcttggtggctatggtgccccatggtttgttctatccctctgcccagGTTGTACTGCCCACACTGGCCCTCACTTCGCATTGCAGCCTTTGAGAAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAggtgagtccgtgggctccgggtggcactagagcagcttgggagttttgccg Alignment from CESAR GTTGTGCTGCCCACGCTGGCC-TCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAg cctgcttggtggctatggtgccccatggtttgttctatccctctgcccagGTTGTACTGCCCACACTGGCCCTCACTTCGCATTGCAGCCTTTGAGAAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAggtgagtccgtgggctccgggtggcactagagcagcttgggagttttgccg Alignment from Spaln_aa2Genome GTTGTGCTGCCCACGCTGGCC-TCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG cctgcttggtggctatggtgccccatggtttgttctatccctctgcccagGTTGTACTGCCCACACTGGCCcTCACTTCGCATTGCAGCCTTTGAGAAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAGgtgagtccgtgggctccgggtggcactagagcagcttgggagttttgccg Alignment from Spaln_nt2Genome GTTGTGCTGCCCACGCTGGCC-TCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG cctgcttggtggctatggtgccccatggtttgttctatccctctgcccagGTTGTACTGCCCACACTGGCCCTCACTTCGCATTGCAGCCTTTGAGAAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAGgtgagtccgtgggctccgggtggcactagagcagcttgggagttttgccg Alignment from Pairagon GTTGTGCTGCCCACGCTGG-CCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG cctgcttggtggctatggtgccccatggtttgttctatccctctgcccagGTTGTACTGCCCACACTGGCCCTCACTTCGCATTGCAGCCTTTGAGAAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAGgtgagtccgtgggctccgggtggcactagagcagcttgggagttttgccg Alignment from Exonerate_protein2genome GTTGTGCTGCCCACGCTGGCC-TCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG cctgcttggtggctatggtgccccatggtttgttctatccctctgcccagGTTGTACTGCCCACACTGGCCCTCACTTCGCATTGCAGCCTTTGAGAAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAGgtgagtccgtgggctccgggtggcactagagcagcttgggagttttgccg Alignment from Exonerate_coding2genome GTTGTGCTGCCCACGCTGGCC-TCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG cctgcttggtggctatggtgccccatggtttgttctatccctctgcccagGTTGTACTGCCCACACTGGCCCTCACTTCGCATTGCAGCCTTTGAGAAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAGgtgagtccgtgggctccgggtggcactagagcagcttgggagttttgccg Alignment from GeneWise GTTGTGCTGCCCACGCTGGCC-TCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG cctgcttggtggctatggtgccccatggtttgttctatccctctgcccagGTTGTACTGCCCACACTGGCCCTCACTTCGCATTGCAGCCTTTGAGAAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAGgtgagtccgtgggctccgggtggcactagagcagcttgggagttttgccg #### Plcb3_ID1912_19 --> 0 - 0 Original Alignment GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAG-GGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG ccagtagctgccttacttattaacttcctgaatttatttcttttgtacagGTGATTTCAGGGCAGTTCCTGTCTGACAAGAAGGTGGGTATCTACGTCGAGGTGGACATGTTTGGCCTCCCGGTTGACACAAGATGTAAATATCGTACCCGGACATCTCAGCGGAAACTCATTCAACCCTGTGTGGGACGAAGAACCCTTTGACTTCCCCAAGgtgagtcccctagtggtggctgatccaccaagactgtgctggcttagttt Alignment from CESAR GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAG-GGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG ccagtagctgccttacttattaacttcctgaatttatttcttttgtacagGTGATTTCAGGGCAGTTCCTGTCTGACAAGAAGGTGGGTATCTACGTCGAGGTGGACATGTTTGGCCTCCCGGTTGACACAAGATGTAAATATCGTACCCGGACATCTCAGCGGAAACTCATTCAACCCTGTGTGGGACGAAGAACCCTTTGACTTCCCCAAGgtgagtcccctagtggtggctgatccaccaagactgtgctggcttagttt Alignment from Spaln_aa2Genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAG-GGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG ccagtagctgccttacttattaacttcctgaatttatttcttttgtacagGTGATTTCAGGGCAGTTCCTGTCTGACAAGAAGGTGGGTATCTACGTCGAGGTGGACATGTTTGGCCTCCCGGTTGACACAAGATGTAAATATCGTACCCGGACATCTCAGcGGAAACTCATTCAACCCTGTGTGGGACGAAGAACCCTTTGACTTCCCCAAGgtgagtcccctagtggtggctgatccaccaagactgtgctggcttagttt Alignment from Spaln_nt2Genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAG-GGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG ccagtagctgccttacttattaacttcctgaatttatttcttttgtacagGTGATTTCAGGGCAGTTCCTGTCTGACAAGAAGGTGGGTATCTACGTCGAGGTGGACATGTTTGGCCTCCCGGTTGACACAAGATGTAAATATCGTACCCGGACATCTCAGCGGAAACTCATTCAACCCTGTGTGGGACGAAGAACCCTTTGACTTCCCCAAGgtgagtcccctagtggtggctgatccaccaagactgtgctggcttagttt Alignment from Pairagon GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAG-GGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG ccagtagctgccttacttattaacttcctgaatttatttcttttgtacagGTGATTTCAGGGCAGTTCCTGTCTGACAAGAAGGTGGGTATCTACGTCGAGGTGGACATGTTTGGCCTCCCGGTTGACACAAGATGTAAATATCGTACCCGGACATCTCAGCGGAAACTCATTCAACCCTGTGTGGGACGAAGAACCCTTTGACTTCCCCAAGgtgagtcccctagtggtggctgatccaccaagactgtgctggcttagttt Alignment from Exonerate_protein2genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAG-GGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG ccagtagctgccttacttattaacttcctgaatttatttcttttgtacagGTGATTTCAGGGCAGTTCCTGTCTGACAAGAAGGTGGGTATCTACGTCGAGGTGGACATGTTTGGCCTCCCGGTTGACACAAGATGTAAATATCGTACCCGGACATCTCAGCGGAAACTCATTCAACCCTGTGTGGGACGAAGAACCCTTTGACTTCCCCAAGgtgagtcccctagtggtggctgatccaccaagactgtgctggcttagttt Alignment from Exonerate_coding2genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAG-GGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG ccagtagctgccttacttattaacttcctgaatttatttcttttgtacagGTGATTTCAGGGCAGTTCCTGTCTGACAAGAAGGTGGGTATCTACGTCGAGGTGGACATGTTTGGCCTCCCGGTTGACACAAGATGTAAATATCGTACCCGGACATCTCAGCGGAAACTCATTCAACCCTGTGTGGGACGAAGAACCCTTTGACTTCCCCAAGgtgagtcccctagtggtggctgatccaccaagactgtgctggcttagttt Alignment from GeneWise GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCC-CAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG ccagtagctgccttacttattaacttcctgaatttatttcttttgtacagGTGATTTCAGGGCAGTTCCTGTCTGACAAGAAGGTGGGTATCTACGTCGAGGTGGACATGTTTGGCCTCCCGGTTGACACAAGATGTAAATATCGTACCCGGACATCTCAGCGGAAACTCATTCAACCCTGTGTGGGACGAAGAACCCTTTGACTTCCCCAAGgtgagtcccctagtggtggctgatccaccaagactgtgctggcttagttt #### Plcb3_ID1913_18 --> 2 - 0 Original Alignment atTTGCCAATGCAGCTCAACGCAGGC-GTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG tggctgacccgtgctgagaccctttactccttcactttctttctctttagatTTGCCAATGCAGCTCAACGCAGGTCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAATCTTTTGATCCCTTCACTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagtcccaggagaggcttggcctagggtgttttgaggaagacacacca Alignment from CESAR atTTGCCAATGCAGCTCAACGCAGGC-GTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG tggctgacccgtgctgagaccctttactccttcactttctttctctttagatTTGCCAATGCAGCTCAACGCAGGTCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAATCTTTTGATCCCTTCACTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagtcccaggagaggcttggcctagggtgttttgaggaagacacacca Alignment from Spaln_aa2Genome ATTTGCCAATGCAGCTCAACGCAGGC-GTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG tggctgacccgtgctgagaccctttactccttcactttctttctctttagATTTGCCAATGCAGCTCAACGCAGGTcGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAATCTTTTGATCCCTTCACTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagtcccaggagaggcttggcctagggtgttttgaggaagacacacca Alignment from Spaln_nt2Genome ATTTGCCAATGCAGCTCAACGCAGG-CGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG tggctgacccgtgctgagaccctttactccttcactttctttctctttagATTTGCCAATGCAGCTCAACGCAGGTCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAATCTTTTGATCCCTTCACTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagtcccaggagaggcttggcctagggtgttttgaggaagacacacca Alignment from Pairagon ATTTGCCAATGCAGCTCAACGCAGG-CGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG tggctgacccgtgctgagaccctttactccttcactttctttctctttagATTTGCCAATGCAGCTCAACGCAGGTCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAATCTTTTGATCCCTTCACTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagtcccaggagaggcttggcctagggtgttttgaggaagacacacca Alignment from Exonerate_protein2genome ATTTGCCAATGCAGCTCAACGCAGGC-GTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG tggctgacccgtgctgagaccctttactccttcactttctttctctttagATTTGCCAATGCAGCTCAACGCAGGTCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAATCTTTTGATCCCTTCACTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagtcccaggagaggcttggcctagggtgttttgaggaagacacacca Alignment from Exonerate_coding2genome ATTTGCCAATGCAGCTCAACGCAGGC-GTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG tggctgacccgtgctgagaccctttactccttcactttctttctctttagATTTGCCAATGCAGCTCAACGCAGGTCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAATCTTTTGATCCCTTCACTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagtcccaggagaggcttggcctagggtgttttgaggaagacacacca Alignment from GeneWise ATTTGCCAATGCAGCTCAACGCAGGC-GTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG tggctgacccgtgctgagaccctttactccttcactttctttctctttagATTTGCCAATGCAGCTCAACGCAGGTCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAATCTTTTGATCCCTTCACTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagtcccaggagaggcttggcctagggtgttttgaggaagacacacca #### Plcb3_ID1914_17 --> 1 - 1 Original Alignment aTACAACAAACAGCAGCTCAGCCGCATCTAC-CCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGg ctggaagaggatgcttcttcttctttgactacccacccctttctccgcaggTACAACAAACAGCAGCTCAGCCGCATCTACCCCTAAGGGCACACAGGTGGACTCCTCTAACTACATGCCTCACCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGggtgaggtctggccctgtcttagggattttattggtggataaaacaacatg Alignment from CESAR aTACAACAAACAGCAGCTCAGCCGCATCTAC-CCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGg ctggaagaggatgcttcttcttctttgactacccacccctttctccgcaggTACAACAAACAGCAGCTCAGCCGCATCTACCCCTAAGGGCACACAGGTGGACTCCTCTAACTACATGCCTCACCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGggtgaggtctggccctgtcttagggattttattggtggataaaacaacatg Alignment from Spaln_aa2Genome ATACAACAAACAGCAGCTCAGCCGCATCTAC-CCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG ctggaagaggatgcttcttcttctttgactacccacccctttctccgcagGTACAACAAACAGCAGCTCAGCCGCATCTACcCCTAAGGGCACACAGGTGGACTCCTCTAACTACATGCCTCACCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGGgtgaggtctggccctgtcttagggattttattggtggataaaacaacatg Alignment from Spaln_nt2Genome ATACAACAAACAGCAGCTCAGCCGCATCTA-CCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG ctggaagaggatgcttcttcttctttgactacccacccctttctccgcagGTACAACAAACAGCAGCTCAGCCGCATCTACCCCTAAGGGCACACAGGTGGACTCCTCTAACTACATGCCTCACCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGGgtgaggtctggccctgtcttagggattttattggtggataaaacaacatg Alignment from Pairagon ATACAACAAACAGCAGCTCAGCCGCATCTA-CCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG ctggaagaggatgcttcttcttctttgactacccacccctttctccgcagGTACAACAAACAGCAGCTCAGCCGCATCTACCCCTAAGGGCACACAGGTGGACTCCTCTAACTACATGCCTCACCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGGgtgaggtctggccctgtcttagggattttattggtggataaaacaacatg Alignment from Exonerate_protein2genome ATACAACAAACAGCAGCTCAGCCGCATCTAC-CCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG ctggaagaggatgcttcttcttctttgactacccacccctttctccgcagGTACAACAAACAGCAGCTCAGCCGCATCTACCCCTAAGGGCACACAGGTGGACTCCTCTAACTACATGCCTCACCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGGgtgaggtctggccctgtcttagggattttattggtggataaaacaacatg Alignment from Exonerate_coding2genome ATACAACAAACAGCAGCTCAGCCGCATCTAC-CCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG ctggaagaggatgcttcttcttctttgactacccacccctttctccgcagGTACAACAAACAGCAGCTCAGCCGCATCTACCCCTAAGGGCACACAGGTGGACTCCTCTAACTACATGCCTCACCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGGgtgaggtctggccctgtcttagggattttattggtggataaaacaacatg Alignment from GeneWise ATACAACAAACAGCAGCTCAGCCGCATCTACCCT-AAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG ctggaagaggatgcttcttcttctttgactacccacccctttctccgcagGTACAACAAACAGCAGCTCAGCCGCATCTACCCCTAAGGGCACACAGGTGGACTCCTCTAACTACATGCCTCACCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGGgtgaggtctggccctgtcttagggattttattggtggataaaacaacatg #### Plcb3_ID1918_13 --> 0 - 1 Original Alignment CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTG-ATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTg aggtgaagggagcttgattgcctaggtctggccctgtttctccatagcagCTATCTGAGGGCATCCCCCTGCCTAGTCCACAGGACCTTCATG---GGTATCCTGGTGAAGAATAGGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCACTGAGTGAGAGCTCCGCTGCCACAGAGCCCTCGTCACCTCAGCTTggtatgagtcctgtcctgacttccacccctgatcctaatgcagacatattt Alignment from CESAR CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTG-ATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTg aggtgaagggagcttgattgcctaggtctggccctgtttctccatagcagCTATCTGAGGGCATCCCCCTGCCTAGTCCACAGGACCTTCATGGGT---ATCCTGGTGAAGAATAGGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCACTGAGTGAGAGCTCCGCTGCCACAGAGCCCTCGTCACCTCAGCTTggtatgagtcctgtcctgacttccacccctgatcctaatgcagacatattt Alignment from Spaln_aa2Genome CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG aggtgaagggagcttgattgcctaggtctggccctgtttctccatagcagCTATCTGAGGGCATCCCCCTGCCTAGTCCACAGGACCTTCATGGGT--ATCCTGGTGAAGAATAGGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCACTGAGTGAGAGCTCCGCTGCCACAGAGCCCTCGTCACCTCAGCTTGgtatgagtcctgtcctgacttccacccctgatcctaatgcagacatattt Alignment from Spaln_nt2Genome CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG aggtgaagggagcttgattgcctaggtctggccctgtttctccatagcagCTATCTGAGGGCATCCCCCTGCCTAGTCCACAGGACCTTCATGG--GTATCCTGGTGAAGAATAGGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCACTGAGTGAGAGCTCCGCTGCCACAGAGCCCTCGTCACCTCAGCTTGgtatgagtcctgtcctgacttccacccctgatcctaatgcagacatattt Alignment from Pairagon CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACC-TGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG aggtgaagggagcttgattgcctaggtctggccctgtttctccatagcagCTATCTGAGGGCATCCCCCTGCCTAGTCCACAGGACCTTCATGG---GTATCCTGGTGAAGAATAGGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCACTGAGTGAGAGCTCCGCTGCCACAGAGCCCTCGTCACCTCAGCTTGgtatgagtcctgtcctgacttccacccctgatcctaatgcagacatattt Alignment from Exonerate_protein2genome CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTG-ATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG aggtgaagggagcttgattgcctaggtctggccctgtttctccatagcagCTATCTGAGGGCATCCCCCTGCCTAGTCCACAGGACCTTCATGGGT---ATCCTGGTGAAGAATAGGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCACTGAGTGAGAGCTCCGCTGCCACAGAGCCCTCGTCACCTCAGCTTGgtatgagtcctgtcctgacttccacccctgatcctaatgcagacatattt Alignment from Exonerate_coding2genome CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTG-ATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG aggtgaagggagcttgattgcctaggtctggccctgtttctccatagcagCTATCTGAGGGCATCCCCCTGCCTAGTCCACAGGACCTTCATGGGT---ATCCTGGTGAAGAATAGGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCACTGAGTGAGAGCTCCGCTGCCACAGAGCCCTCGTCACCTCAGCTTGgtatgagtcctgtcctgacttccacccctgatcctaatgcagacatattt Alignment from GeneWise CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTGGGTCC- aggtgaagggagcttgattgcctaggtctggccctgtttctccatagcagCTATCTGAGGGCATCCCCCTGCCTAGTCCACAGGACCTTCATGGGT--ATCCTGGTGAAGAATAGGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCACTGAGTGAGAGCTCCGCTGCCACAGAGCCCTCGTCACCTCAGCTTGGTATGAgtcctgtcctgacttccacccctgatcctaatgcagacatattt #### Plcb3_ID1924_7 --> 1 - 2 Original Alignment cATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCC-TGTGGCCTCAACTTCAACCGAgt tttctgccgcccgtccccccattgaccctattaatttttcttccctctagcATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCCTGTGGCCTCAACTTCAACCGAgtgtgagtggcagggccagggtgagggtggggcaggttgggctgtcgcagtg Alignment from CESAR cATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCC-TGTGGCCTCAACTTCAACCGAgt tttctgccgcccgtccccccattgaccctattaatttttcttccctctagcATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCCTGTGGCCTCAACTTCAACCGAgtgtgagtggcagggccagggtgagggtggggcaggttgggctgtcgcagtg Alignment from Spaln_aa2Genome CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCC-TGTGGCCTCAACTTCAACCGAGT tttctgccgcccgtccccccattgaccctattaatttttcttccctctagCATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCcTGTGGCCTCAACTTCAACCGAGTgtgagtggcagggccagggtgagggtggggcaggttgggctgtcgcagtg Alignment from Spaln_nt2Genome CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTC-CTGTGGCCTCAACTTCAACCGAGT tttctgccgcccgtccccccattgaccctattaatttttcttccctctagCATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCCTGTGGCCTCAACTTCAACCGAGTgtgagtggcagggccagggtgagggtggggcaggttgggctgtcgcagtg Alignment from Pairagon CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGT-CCTGTGGCCTCAACTTCAACCGAGT tttctgccgcccgtccccccattgaccctattaatttttcttccctctagCATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCCTGTGGCCTCAACTTCAACCGAGTgtgagtggcagggccagggtgagggtggggcaggttgggctgtcgcagtg Alignment from Exonerate_protein2genome CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCC-TGTGGCCTCAACTTCAACCGAGT tttctgccgcccgtccccccattgaccctattaatttttcttccctctagCATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCCTGTGGCCTCAACTTCAACCGAGTgtgagtggcagggccagggtgagggtggggcaggttgggctgtcgcagtg Alignment from Exonerate_coding2genome CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCC-TGTGGCCTCAACTTCAACCGAGT tttctgccgcccgtccccccattgaccctattaatttttcttccctctagCATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCCTGTGGCCTCAACTTCAACCGAGTgtgagtggcagggccagggtgagggtggggcaggttgggctgtcgcagtg Alignment from GeneWise CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAG-TCCTGTGGCCTCAACTTCAACCGAGT tttctgccgcccgtccccccattgaccctattaatttttcttccctctagCATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCCTGTGGCCTCAACTTCAACCGAGTgtgagtggcagggccagggtgagggtggggcaggttgggctgtcgcagtg #### Plcb3_ID1925_6 --> 1 - 2 Original Alignment aTACACGAAGCTGAAGCTG-CAGGTGAACCAGGATGGACGGATTCCGGTCAAGaa ggagttccactgacaagacccaagatcgagccaaggtcttcttcccacagaTACACGAAGCTGAAGCTGCCAGGTGAATCAGGATGGACGGATTCCGGTCAAGaagtaagttccccttccccctcagcatcttctctcctgccctgacattggtg Alignment from CESAR aTACACGAAGCTGAAGCTG-CAGGTGAACCAGGATGGACGGATTCCGGTCAAGaa ggagttccactgacaagacccaagatcgagccaaggtcttcttcccacagaTACACGAAGCTGAAGCTGCCAGGTGAATCAGGATGGACGGATTCCGGTCAAGaagtaagttccccttccccctcagcatcttctctcctgccctgacattggtg Alignment from Spaln_aa2Genome ATACACGAAGCTGAAGCTG-CAGGTGAACCAGGATGGACGGATTCCGGTCAAGAA ggagttccactgacaagacccaagatcgagccaaggtcttcttcccacagATACACGAAGCTGAAGCTGcCAGGTGAATCAGGATGGACGGATTCCGGTCAAGAAgtaagttccccttccccctcagcatcttctctcctgccctgacattggtg Alignment from Spaln_nt2Genome ATACACGAAGCTGAAGCTG-CAGGTGAACCAGGATGGACGGATTCCGGTCAAGAA ggagttccactgacaagacccaagatcgagccaaggtcttcttcccacagATACACGAAGCTGAAGCTGCCAGGTGAATCAGGATGGACGGATTCCGGTCAAGAAgtaagttccccttccccctcagcatcttctctcctgccctgacattggtg Alignment from Pairagon ATACACGAAGCTGAAGCTG-CAGGTGAACCAGGATGGACGGATTCCGGTCAAGAA ggagttccactgacaagacccaagatcgagccaaggtcttcttcccacagATACACGAAGCTGAAGCTGCCAGGTGAATCAGGATGGACGGATTCCGGTCAAGAAgtaagttccccttccccctcagcatcttctctcctgccctgacattggtg Alignment from Exonerate_protein2genome ATACACGAAGCTGAAGCTG-CAGGTGAACCAGGATGGACGGATTCCGGTCAAGAA ggagttccactgacaagacccaagatcgagccaaggtcttcttcccacagATACACGAAGCTGAAGCTGCCAGGTGAATCAGGATGGACGGATTCCGGTCAAGAAgtaagttccccttccccctcagcatcttctctcctgccctgacattggtg Alignment from Exonerate_coding2genome ATACACGAAGCTGAAGCTG-CAGGTGAACCAGGATGGACGGATTCCGGTCAAGAA ggagttccactgacaagacccaagatcgagccaaggtcttcttcccacagATACACGAAGCTGAAGCTGCCAGGTGAATCAGGATGGACGGATTCCGGTCAAGAAgtaagttccccttccccctcagcatcttctctcctgccctgacattggtg Alignment from GeneWise ATACACGAAGCTGAAG-CTGCAGGTGAACCAGGATGGACGGATTCCGGTCAAGAA ggagttccactgacaagacccaagatcgagccaaggtcttcttcccacagATACACGAAGCTGAAGCTGCCAGGTGAATCAGGATGGACGGATTCCGGTCAAGAAgtaagttccccttccccctcagcatcttctctcctgccctgacattggtg #### Plcb3_ID1927_4 --> 0 - 0 Original Alignment GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACC-CGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG actcctccccttcctcttcgttctactcgtgtgttggggggcgggggcagGACCCTAAGATTCGAGAAGTGTTGGGCTTTGGAGGCCCTGACACCCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCTGGGCCAGATCTAGTAAATACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtgagttggtgtcaagtgacaacccaggaaggagaggtttggttgtaaga Alignment from CESAR GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACC-CGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG actcctccccttcctcttcgttctactcgtgtgttggggggcgggggcagGACCCTAAGATTCGAGAAGTGTTGGGCTTTGGAGGCCCTGACACCCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCTGGGCCAGATCTAGTAAATACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtgagttggtgtcaagtgacaacccaggaaggagaggtttggttgtaaga Alignment from Spaln_aa2Genome GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACC-CGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG actcctccccttcctcttcgttctactcgtgtgttggggggcgggggcagGACCCTAAGATTCGAGAAGTGTTGGGCTTTGGAGGCCCTGACACCcCGGCTGGAGGAGAAACTGATGACAGTGGTGGCTGGGCCAGATCTAGTAAATACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtgagttggtgtcaagtgacaacccaggaaggagaggtttggttgtaaga Alignment from Spaln_nt2Genome GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACA-CCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG actcctccccttcctcttcgttctactcgtgtgttggggggcgggggcagGACCCTAAGATTCGAGAAGTGTTGGGCTTTGGAGGCCCTGACACCCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCTGGGCCAGATCTAGTAAATACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtgagttggtgtcaagtgacaacccaggaaggagaggtttggttgtaaga Alignment from Pairagon GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACA-CCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG actcctccccttcctcttcgttctactcgtgtgttggggggcgggggcagGACCCTAAGATTCGAGAAGTGTTGGGCTTTGGAGGCCCTGACACCCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCTGGGCCAGATCTAGTAAATACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtgagttggtgtcaagtgacaacccaggaaggagaggtttggttgtaaga Alignment from Exonerate_protein2genome GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACC-CGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG actcctccccttcctcttcgttctactcgtgtgttggggggcgggggcagGACCCTAAGATTCGAGAAGTGTTGGGCTTTGGAGGCCCTGACACCCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCTGGGCCAGATCTAGTAAATACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtgagttggtgtcaagtgacaacccaggaaggagaggtttggttgtaaga Alignment from Exonerate_coding2genome GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACC-CGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG actcctccccttcctcttcgttctactcgtgtgttggggggcgggggcagGACCCTAAGATTCGAGAAGTGTTGGGCTTTGGAGGCCCTGACACCCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCTGGGCCAGATCTAGTAAATACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtgagttggtgtcaagtgacaacccaggaaggagaggtttggttgtaaga Alignment from GeneWise GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGAC-ACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG actcctccccttcctcttcgttctactcgtgtgttggggggcgggggcagGACCCTAAGATTCGAGAAGTGTTGGGCTTTGGAGGCCCTGACACCCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCTGGGCCAGATCTAGTAAATACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtgagttggtgtcaagtgacaacccaggaaggagaggtttggttgtaaga #### Plekhs1_ID12098_3 --> 0 - 2 Original Alignment ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTACAAA-GACCATCAGCACAGAGGTTCCATCGAAATTGACgg ccttgctcttctgggcattaactgaactgacgcagtttctccttttcaagACCTCCTGGAAAAAGCGTCTTTTTATACTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCTTATTACAAACGACCATCAGCACAGAGGTTCCATTGAAATTGACgggtgagtatccaggccaggaaatgtgtgtatcagcaactgagccaaagaat Alignment from CESAR ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTACAAA-GACCATCAGCACAGAGGTTCCATCGAAATTGACgg ccttgctcttctgggcattaactgaactgacgcagtttctccttttcaagACCTCCTGGAAAAAGCGTCTTTTTATACTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCTTATTACAAACGACCATCAGCACAGAGGTTCCATTGAAATTGACgggtgagtatccaggccaggaaatgtgtgtatcagcaactgagccaaagaat Alignment from Spaln_aa2Genome ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTACAAA-GACCATCAGCACAGAGGTTCCATCGAAATTGACGG ccttgctcttctgggcattaactgaactgacgcagtttctccttttcaagACCTCCTGGAAAAAGCGTCTTTTTATACTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCTTATTACAAAcGACCATCAGCACAGAGGTTCCATTGAAATTGACGGgtgagtatccaggccaggaaatgtgtgtatcagcaactgagccaaagaat Alignment from Spaln_nt2Genome ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTACAAA-GACCATCAGCACAGAGGTTCCATCGAAATTGACGG ccttgctcttctgggcattaactgaactgacgcagtttctccttttcaagACCTCCTGGAAAAAGCGTCTTTTTATACTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCTTATTACAAACGACCATCAGCACAGAGGTTCCATTGAAATTGACGGgtgagtatccaggccaggaaatgtgtgtatcagcaactgagccaaagaat Alignment from Pairagon ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTACAAA-GACCATCAGCACAGAGGTTCCATCGAAATTGACGG ccttgctcttctgggcattaactgaactgacgcagtttctccttttcaagACCTCCTGGAAAAAGCGTCTTTTTATACTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCTTATTACAAACGACCATCAGCACAGAGGTTCCATTGAAATTGACGGgtgagtatccaggccaggaaatgtgtgtatcagcaactgagccaaagaat Alignment from Exonerate_protein2genome ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTACAAA-GACCATCAGCACAGAGGTTCCATCGAAATTGACGG ccttgctcttctgggcattaactgaactgacgcagtttctccttttcaagACCTCCTGGAAAAAGCGTCTTTTTATACTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCTTATTACAAACGACCATCAGCACAGAGGTTCCATTGAAATTGACGGgtgagtatccaggccaggaaatgtgtgtatcagcaactgagccaaagaat Alignment from Exonerate_coding2genome ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTACAAA-GACCATCAGCACAGAGGTTCCATCGAAATTGACGG ccttgctcttctgggcattaactgaactgacgcagtttctccttttcaagACCTCCTGGAAAAAGCGTCTTTTTATACTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCTTATTACAAACGACCATCAGCACAGAGGTTCCATTGAAATTGACGGgtgagtatccaggccaggaaatgtgtgtatcagcaactgagccaaagaat Alignment from GeneWise ACCTCCTGGAAAAAGCGTCTTTTTATTCTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCCTATTAC-AAAGACCATCAGCACAGAGGTTCCATCGAAATTGACGG ccttgctcttctgggcattaactgaactgacgcagtttctccttttcaagACCTCCTGGAAAAAGCGTCTTTTTATACTGTCCCAGAGTCGGGGAACGGGTCTCAGTCTTTCTTATTACAAACGACCATCAGCACAGAGGTTCCATTGAAATTGACGGgtgagtatccaggccaggaaatgtgtgtatcagcaactgagccaaagaat #### Pnliprp1_ID12765_2 --> 2 - 0 Original Alignment ggAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAA-CTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG agcccagccacgatagcttcctgctgagtcctccccatcttgccttctagggAAAGAGGTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCGATCAGGCCCCTAAAACCTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACTAATGAGAACCCAACTGCTTTCCAGgtgagtcttcatgagctctggggacaccttcttatctttcgacctgtttc Alignment from CESAR ggAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAA-CTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG agcccagccacgatagcttcctgctgagtcctccccatcttgccttctagggAAAGAGGTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCGATCAGGCCCCTAAAACCTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACTAATGAGAACCCAACTGCTTTCCAGgtgagtcttcatgagctctggggacaccttcttatctttcgacctgtttc Alignment from Spaln_aa2Genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAA-CTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG agcccagccacgatagcttcctgctgagtcctccccatcttgccttctagGGAAAGAGGTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCGATCAGGCCCCTAAAAcCTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACTAATGAGAACCCAACTGCTTTCCAGgtgagtcttcatgagctctggggacaccttcttatctttcgacctgtttc Alignment from Spaln_nt2Genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCT-AAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG agcccagccacgatagcttcctgctgagtcctccccatcttgccttctagGGAAAGAGGTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCGATCAGGCCCCTAAAACCTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACTAATGAGAACCCAACTGCTTTCCAGgtgagtcttcatgagctctggggacaccttcttatctttcgacctgtttc Alignment from Pairagon GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAAC-TTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG agcccagccacgatagcttcctgctgagtcctccccatcttgccttctagGGAAAGAGGTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCGATCAGGCCCCTAAAACCTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACTAATGAGAACCCAACTGCTTTCCAGgtgagtcttcatgagctctggggacaccttcttatctttcgacctgtttc Alignment from Exonerate_protein2genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAA-CTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG agcccagccacgatagcttcctgctgagtcctccccatcttgccttctagGGAAAGAGGTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCGATCAGGCCCCTAAAACCTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACTAATGAGAACCCAACTGCTTTCCAGgtgagtcttcatgagctctggggacaccttcttatctttcgacctgtttc Alignment from Exonerate_coding2genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAA-CTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG agcccagccacgatagcttcctgctgagtcctccccatcttgccttctagGGAAAGAGGTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCGATCAGGCCCCTAAAACCTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACTAATGAGAACCCAACTGCTTTCCAGgtgagtcttcatgagctctggggacaccttcttatctttcgacctgtttc Alignment from GeneWise GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAA-CTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG agcccagccacgatagcttcctgctgagtcctccccatcttgccttctagGGAAAGAGGTTTGTTATCACAACCTTGGGTGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCGATCAGGCCCCTAAAACCTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACTAATGAGAACCCAACTGCTTTCCAGgtgagtcttcatgagctctggggacaccttcttatctttcgacctgtttc #### Pold4_ID438_3 --> 2 - 2 Original Alignment gtATCACAAGGCTGCAG-CGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCag gtccactatgatcctcctgcctatctcccaaatcttttcttttctttcaggtATCACAAGGCTGCAGCCGCTGGAGTCGGGCAGAGCAAATGGGCTTGAAGCCCCCCCTAGAGGTGTACCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCaggtgaggatagactcggacagctttcaggggacccagggacttctccagga Alignment from CESAR gtATCACAAGGCTGCAG-CGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCag gtccactatgatcctcctgcctatctcccaaatcttttcttttctttcaggtATCACAAGGCTGCAGCCGCTGGAGTCGGGCAGAGCAAATGGGCTTGAAGCCCCCCCTAGAGGTGTACCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCaggtgaggatagactcggacagctttcaggggacccagggacttctccagga Alignment from Spaln_aa2Genome GTATCACAAGGCTGCAG-CGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG gtccactatgatcctcctgcctatctcccaaatcttttcttttctttcagGTATCACAAGGCTGCAGcCGCTGGAGTCGGGCAGAGCAAATGGGCTTGAAGCCCCCCCTAGAGGTGTACCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAGgtgaggatagactcggacagctttcaggggacccagggacttctccagga Alignment from Spaln_nt2Genome GTATCACAAGGCTGCAG-CGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG gtccactatgatcctcctgcctatctcccaaatcttttcttttctttcagGTATCACAAGGCTGCAGCCGCTGGAGTCGGGCAGAGCAAATGGGCTTGAAGCCCCCCCTAGAGGTGTACCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAGgtgaggatagactcggacagctttcaggggacccagggacttctccagga Alignment from Pairagon GTATCACAAGGCTGCAG-CGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG gtccactatgatcctcctgcctatctcccaaatcttttcttttctttcagGTATCACAAGGCTGCAGCCGCTGGAGTCGGGCAGAGCAAATGGGCTTGAAGCCCCCCCTAGAGGTGTACCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAGgtgaggatagactcggacagctttcaggggacccagggacttctccagga Alignment from Exonerate_protein2genome GTATCACAAGGCTGCAG-CGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG gtccactatgatcctcctgcctatctcccaaatcttttcttttctttcagGTATCACAAGGCTGCAGCCGCTGGAGTCGGGCAGAGCAAATGGGCTTGAAGCCCCCCCTAGAGGTGTACCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAGgtgaggatagactcggacagctttcaggggacccagggacttctccagga Alignment from Exonerate_coding2genome GTATCACAAGGCTGCAG-CGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGC gtccactatgatcctcctgcctatctcccaaatcttttcttttctttcagGTATCACAAGGCTGCAGCCGCTGGAGTCGGGCAGAGCAAATGGGCTTGAAGCCCCCCCTAGAGGTGTACCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCaggtgaggatagactcggacagctttcaggggacccagggacttctccagga Alignment from GeneWise CACAAGGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGC gtccactatgatcctcctgcctatctcccaaatcttttcttttctttcaggtatcacaaggctgcagC------------CGCTGGAGTCGGGCAGAGCAAATGGGCTTGAAGCCCCCCCTAGAGGTGTACCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCaggtgaggatagactcggacagctttcaggggacccagggacttctccagga #### Poll_ID9484_3 --> 1 - 0 Original Alignment gTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACG-GCAGAAAAGCCATCAAGAACCCAAGCCCAG caggtaagaatttgataccctaacgctcccctctcattgttgcggtttaggTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGAACCACCCTTTCTCTTTCCCCTCCTCATACCAGAGCAGTATCTCCTCCCCCAACACGCAGAAAAGCCATCAAGAACCCAAGCCCAGgtaaatagcctcccagcccagggtgatgatcacagaaaatgaaaggactg Alignment from CESAR gTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACG-GCAGAAAAGCCATCAAGAACCCAAGCCCAG caggtaagaatttgataccctaacgctcccctctcattgttgcggtttaggTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGAACCACCCTTTCTCTTTCCCCTCCTCATACCAGAGCAGTATCTCCTCCCCCAACACGCAGAAAAGCCATCAAGAACCCAAGCCCAGgtaaatagcctcccagcccagggtgatgatcacagaaaatgaaaggactg Alignment from Spaln_aa2Genome GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACG-GCAGAAAAGCCATCAAGAACCCAAGCCCAG caggtaagaatttgataccctaacgctcccctctcattgttgcggtttagGTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGAACCACCCTTTCTCTTTCCCCTCCTCATACCAGAGCAGTATCTCCTCCCCCAACAcGCAGAAAAGCCATCAAGAACCCAAGCCCAGgtaaatagcctcccagcccagggtgatgatcacagaaaatgaaaggactg Alignment from Spaln_nt2Genome GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACG-GCAGAAAAGCCATCAAGAACCCAAGCCCAG caggtaagaatttgataccctaacgctcccctctcattgttgcggtttagGTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGAACCACCCTTTCTCTTTCCCCTCCTCATACCAGAGCAGTATCTCCTCCCCCAACACGCAGAAAAGCCATCAAGAACCCAAGCCCAGgtaaatagcctcccagcccagggtgatgatcacagaaaatgaaaggactg Alignment from Pairagon GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACG-GCAGAAAAGCCATCAAGAACCCAAGCCCAG caggtaagaatttgataccctaacgctcccctctcattgttgcggtttagGTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGAACCACCCTTTCTCTTTCCCCTCCTCATACCAGAGCAGTATCTCCTCCCCCAACACGCAGAAAAGCCATCAAGAACCCAAGCCCAGgtaaatagcctcccagcccagggtgatgatcacagaaaatgaaaggactg Alignment from Exonerate_protein2genome GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACG-GCAGAAAAGCCATCAAGAACCCAAGCCCAG caggtaagaatttgataccctaacgctcccctctcattgttgcggtttagGTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGAACCACCCTTTCTCTTTCCCCTCCTCATACCAGAGCAGTATCTCCTCCCCCAACACGCAGAAAAGCCATCAAGAACCCAAGCCCAGgtaaatagcctcccagcccagggtgatgatcacagaaaatgaaaggactg Alignment from Exonerate_coding2genome GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACG-GCAGAAAAGCCATCAAGAACCCAAGCCCAG caggtaagaatttgataccctaacgctcccctctcattgttgcggtttagGTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGAACCACCCTTTCTCTTTCCCCTCCTCATACCAGAGCAGTATCTCCTCCCCCAACACGCAGAAAAGCCATCAAGAACCCAAGCCCAGgtaaatagcctcccagcccagggtgatgatcacagaaaatgaaaggactg Alignment from GeneWise GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCTGTATCTCCTCCCCCAACG-GCAGAAAAGCCATCAAGAACCCAAGCCCAG caggtaagaatttgataccctaacgctcccctctcattgttgcggtttagGTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGAACCACCCTTTCTCTTTCCCCTCCTCATACCAGAGCAGTATCTCCTCCCCCAACACGCAGAAAAGCCATCAAGAACCCAAGCCCAGgtaaatagcctcccagcccagggtgatgatcacagaaaatgaaaggactg #### Polr2g_ID2376_7 --> 0 - 1 Original Alignment TTTGCCATTGGCTCTCTGATG-GACGACTACTTGg cttgggattggggcatgctgcctcatcttgacactgacttctttacacagTTTGCTATTGGCTCTCTGATGCGACGACTACCTGggtgagtgcctgagtgctgagacctggaacttgttccctgaggaagggtgt Alignment from CESAR TTTGCCATTGGCTCTCTGATG-GACGACTACTTGg cttgggattggggcatgctgcctcatcttgacactgacttctttacacagTTTGCTATTGGCTCTCTGATGCGACGACTACCTGggtgagtgcctgagtgctgagacctggaacttgttccctgaggaagggtgt Alignment from Spaln_aa2Genome TTTGCCATTGGCTCTCTGATGGACGACTACTTGGGGCTCGTGAGC cttgggattggggcatgctgcctcatcttgacactgacttctttacacagTTTGCTATTGGCTCTCTGATGCGA---------CGACTACCTGGGtgagtgcctgagtgctgagacctggaacttgttccctgaggaagggtgt Alignment from Spaln_nt2Genome TTTGCCATTGGCTCTCTGATG-GACGACTACTTGG cttgggattggggcatgctgcctcatcttgacactgacttctttacacagTTTGCTATTGGCTCTCTGATGCGACGACTACCTGGgtgagtgcctgagtgctgagacctggaacttgttccctgaggaagggtgt Alignment from Pairagon TTTGCCATTGGCTCTCTGATG-GACGACTACTTGG cttgggattggggcatgctgcctcatcttgacactgacttctttacacagTTTGCTATTGGCTCTCTGATGCGACGACTACCTGGgtgagtgcctgagtgctgagacctggaacttgttccctgaggaagggtgt Alignment from Exonerate_protein2genome TTTGCCATTGGCTCTCTGATG-GACGACTACTTGGGG cttgggattggggcatgctgcctcatcttgacactgacttctttacacagTTTGCTATTGGCTCTCTGATGCGACGACTACCTGGGTgagtgcctgagtgctgagacctggaacttgttccctgaggaagggtgt Alignment from Exonerate_coding2genome cttgggattggggcatgctgcctcatcttgacactgacttctttacacagtttgctattggctctctgatgcgacgactacctgggtgagtgcctgagtgctgagacctggaacttgttccctgaggaagggtgt Alignment from GeneWise cttgggattggggcatgctgcctcatcttgacactgacttctttacacagtttgctattggctctctgatgcgacgactacctgggtgagtgcctgagtgctgagacctggaacttgttccctgaggaagggtgt #### Polr2g_ID2378_5 --> 0 - 0 Original Alignment TCCATCCCTTCAGAGATGGAGTTTGATCCAAATTCAAACCCC-CCTTGCTATAAGACCATGGACGAG catcagtgcagctgtttgaagtgcccaccctgaccttctcttatgagcagTCCATACCTTCAGAGATGGAGTTTGATCCAAATTCAAACCCCCCCTTGTTATAAGACCATGGATGAAgtcagtgagcgtggaggagtggtgagaggtatgaggaaagcaacactgag Alignment from CESAR TCCATCCCTTCAGAGATGGAGTTTGATCCAAATTCAAAC-CCCCCTTGCTATAAGACCATGGACGAG catcagtgcagctgtttgaagtgcccaccctgaccttctcttatgagcagTCCATACCTTCAGAGATGGAGTTTGATCCAAATTCAAACCCCCCCTTGTTATAAGACCATGGATGAAgtcagtgagcgtggaggagtggtgagaggtatgaggaaagcaacactgag Alignment from Spaln_aa2Genome TCCATCCCTTCAGAGATGGAGTTTGATCCAAATTCAAACCCCCCT-TGCTATAAGACCATGGACGAG catcagtgcagctgtttgaagtgcccaccctgaccttctcttatgagcagTCCATACCTTCAGAGATGGAGTTTGATCCAAATTCAAACCCCCCCtTGTTATAAGACCATGGATGAAgtcagtgagcgtggaggagtggtgagaggtatgaggaaagcaacactgag Alignment from Spaln_nt2Genome TCCATCCCTTCAGAGATGGAGTTTGATCCAAATTCAAACCCCC-CTTGCTATAAGACCATGGACGAG catcagtgcagctgtttgaagtgcccaccctgaccttctcttatgagcagTCCATACCTTCAGAGATGGAGTTTGATCCAAATTCAAACCCCCCCTTGTTATAAGACCATGGATGAAgtcagtgagcgtggaggagtggtgagaggtatgaggaaagcaacactgag Alignment from Pairagon TCCATCCCTTCAGAGATGGAGTTTGATCCAAATTCAAA-CCCCCCTTGCTATAAGACCATGGACGAG catcagtgcagctgtttgaagtgcccaccctgaccttctcttatgagcagTCCATACCTTCAGAGATGGAGTTTGATCCAAATTCAAACCCCCCCTTGTTATAAGACCATGGATGAAgtcagtgagcgtggaggagtggtgagaggtatgaggaaagcaacactgag Alignment from Exonerate_protein2genome TCCATCCCTTCAGAGATGGAGTTTGATCCAAATTCAAAC-CCCCCTTGCTATAAGACCATGGACGAG catcagtgcagctgtttgaagtgcccaccctgaccttctcttatgagcagTCCATACCTTCAGAGATGGAGTTTGATCCAAATTCAAACCCCCCCTTGTTATAAGACCATGGATGAAgtcagtgagcgtggaggagtggtgagaggtatgaggaaagcaacactgag Alignment from Exonerate_coding2genome TCCATCCCTTCAGAGATGGAGTTTGATCCAAATTCAAA-CCCCCCTTGCTATAAGACCATGGACGAG catcagtgcagctgtttgaagtgcccaccctgaccttctcttatgagcagTCCATACCTTCAGAGATGGAGTTTGATCCAAATTCAAACCCCCCCTTGTTATAAGACCATGGATGAAgtcagtgagcgtggaggagtggtgagaggtatgaggaaagcaacactgag Alignment from GeneWise TCCATCCCTTCAGAGATGGAGTTTGATCCAAATTCA-AACCCCCCTTGCTATAAGACCATGGACGAG catcagtgcagctgtttgaagtgcccaccctgaccttctcttatgagcagTCCATACCTTCAGAGATGGAGTTTGATCCAAATTCAAACCCCCCCTTGTTATAAGACCATGGATGAAgtcagtgagcgtggaggagtggtgagaggtatgaggaaagcaacactgag #### Ppp1ca_ID409_3 --> 2 - 1 Original Alignment gtGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAAT-TTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAt tcttgtacttacctagtgtacttacttacctggacttccccgtgctccagggGACATCCATGGACAGTACTATGACCTTTTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGACCGGGGCAAGCAGTCCTTGGAGACCATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATCTTCTTCCTACTTCGTGGGAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCAtgtacatgctttgaatgttgccgtctgcccagaagtacattccccgctctt Alignment from CESAR gtGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAAT-TTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAt tcttgtacttacctagtgtacttacttacctggacttccccgtgctccagggGACATCCATGGACAGTACTATGACCTTTTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGACCGGGGCAAGCAGTCCTTGGAGACCATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATCTTCTTCCTACTTCGTGGGAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCAtgtacatgctttgaatgttgccgtctgcccagaagtacattccccgctctt Alignment from Spaln_aa2Genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAAT-TTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT tcttgtacttacctagtgtacttacttacctggacttccccgtgctccagGGGACATCCATGGACAGTACTATGACCTTTTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGACCGGGGCAAGCAGTCCTTGGAGACCATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATcTTCTTCCTACTTCGTGGGAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCATgtacatgctttgaatgttgccgtctgcccagaagtacattccccgctctt Alignment from Spaln_nt2Genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAAT-TTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT tcttgtacttacctagtgtacttacttacctggacttccccgtgctccagGGGACATCCATGGACAGTACTATGACCTTTTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGACCGGGGCAAGCAGTCCTTGGAGACCATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATCTTCTTCCTACTTCGTGGGAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCATgtacatgctttgaatgttgccgtctgcccagaagtacattccccgctctt Alignment from Pairagon GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAAT-TTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT tcttgtacttacctagtgtacttacttacctggacttccccgtgctccagGGGACATCCATGGACAGTACTATGACCTTTTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGACCGGGGCAAGCAGTCCTTGGAGACCATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATCTTCTTCCTACTTCGTGGGAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCATgtacatgctttgaatgttgccgtctgcccagaagtacattccccgctctt Alignment from Exonerate_protein2genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAAT-TTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT tcttgtacttacctagtgtacttacttacctggacttccccgtgctccagGGGACATCCATGGACAGTACTATGACCTTTTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGACCGGGGCAAGCAGTCCTTGGAGACCATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATCTTCTTCCTACTTCGTGGGAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCATgtacatgctttgaatgttgccgtctgcccagaagtacattccccgctctt Alignment from Exonerate_coding2genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAAT-TTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT tcttgtacttacctagtgtacttacttacctggacttccccgtgctccagGGGACATCCATGGACAGTACTATGACCTTTTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGACCGGGGCAAGCAGTCCTTGGAGACCATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATCTTCTTCCTACTTCGTGGGAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCATgtacatgctttgaatgttgccgtctgcccagaagtacattccccgctctt Alignment from GeneWise GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAG-AATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT tcttgtacttacctagtgtacttacttacctggacttccccgtgctccagGGGACATCCATGGACAGTACTATGACCTTTTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGACCGGGGCAAGCAGTCCTTGGAGACCATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATCTTCTTCCTACTTCGTGGGAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCATgtacatgctttgaatgttgccgtctgcccagaagtacattccccgctctt #### Ppp1ca_ID412_6 --> 0 - 0 Original Alignment GTTGTAGAAGATGGCTATGAGTTCTTTGCCAAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTC-ATGTGTTCCTTCCAG gggggtggcatgcctaacttaaagactactaaatgttctcttcttcttagGTTGTAGAAGATGGCTATGAGTTCTTTGCCAAGAGGCAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGACAAGACCCTCCATGTGTTCCTTTCAGgtaagtgtggggaagagcctgcccaatagaagctggctcaaccctaggac Alignment from CESAR GTTGTAGAAGATGGCTATGAGTTCTTTGCCAAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTC-ATGTGTTCCTTCCAG gggggtggcatgcctaacttaaagactactaaatgttctcttcttcttagGTTGTAGAAGATGGCTATGAGTTCTTTGCCAAGAGGCAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGACAAGACCCTCCATGTGTTCCTTTCAGgtaagtgtggggaagagcctgcccaatagaagctggctcaaccctaggac Alignment from Spaln_aa2Genome GTTGTAGAAGATGGCTATGAGTTCTTTGCCAAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTC-ATGTGTTCCTTCCAG gggggtggcatgcctaacttaaagactactaaatgttctcttcttcttagGTTGTAGAAGATGGCTATGAGTTCTTTGCCAAGAGGCAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGACAAGACCCTCcATGTGTTCCTTTCAGgtaagtgtggggaagagcctgcccaatagaagctggctcaaccctaggac Alignment from Spaln_nt2Genome GTTGTAGAAGATGGCTATGAGTTCTTTGCCAAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTC-ATGTGTTCCTTCCAG gggggtggcatgcctaacttaaagactactaaatgttctcttcttcttagGTTGTAGAAGATGGCTATGAGTTCTTTGCCAAGAGGCAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGACAAGACCCTCCATGTGTTCCTTTCAGgtaagtgtggggaagagcctgcccaatagaagctggctcaaccctaggac Alignment from Pairagon GTTGTAGAAGATGGCTATGAGTTCTTTGCCAAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCT-CATGTGTTCCTTCCAG gggggtggcatgcctaacttaaagactactaaatgttctcttcttcttagGTTGTAGAAGATGGCTATGAGTTCTTTGCCAAGAGGCAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGACAAGACCCTCCATGTGTTCCTTTCAGgtaagtgtggggaagagcctgcccaatagaagctggctcaaccctaggac Alignment from Exonerate_protein2genome GTTGTAGAAGATGGCTATGAGTTCTTTGCCAAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTC-ATGTGTTCCTTCCAG gggggtggcatgcctaacttaaagactactaaatgttctcttcttcttagGTTGTAGAAGATGGCTATGAGTTCTTTGCCAAGAGGCAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGACAAGACCCTCCATGTGTTCCTTTCAGgtaagtgtggggaagagcctgcccaatagaagctggctcaaccctaggac Alignment from Exonerate_coding2genome GTTGTAGAAGATGGCTATGAGTTCTTTGCCAAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTC-ATGTGTTCCTTCCAG gggggtggcatgcctaacttaaagactactaaatgttctcttcttcttagGTTGTAGAAGATGGCTATGAGTTCTTTGCCAAGAGGCAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGACAAGACCCTCCATGTGTTCCTTTCAGgtaagtgtggggaagagcctgcccaatagaagctggctcaaccctaggac Alignment from GeneWise GTTGTAGAAGATGGCTATGAGTTCTTTGCCAAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACC-CTCATGTGTTCCTTCCAG gggggtggcatgcctaacttaaagactactaaatgttctcttcttcttagGTTGTAGAAGATGGCTATGAGTTCTTTGCCAAGAGGCAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGACAAGACCCTCCATGTGTTCCTTTCAGgtaagtgtggggaagagcctgcccaatagaagctggctcaaccctaggac #### Ppp1r14b_ID1940_3 --> 0 - 0 Original Alignment GAGCTGTTAGTTGACTGTTAC-AAACCCACTGAG agaaaccctgtcctcaagaagccactattgcttgcttttattgccgtcagGAGCTATTAGTTGACTGTTACCAAACCCACTGAGgtggggtactctccttgccctcggtcctagggtgagtgtgtatgtgtgca Alignment from CESAR GAGCTGTTAGTTGACTGTTAC-AAACCCACTGAG agaaaccctgtcctcaagaagccactattgcttgcttttattgccgtcagGAGCTATTAGTTGACTGTTACCAAACCCACTGAGgtggggtactctccttgccctcggtcctagggtgagtgtgtatgtgtgca Alignment from Spaln_aa2Genome GAGCTGTTAGTTGACTGTTAC-AAACCCACTGAG agaaaccctgtcctcaagaagccactattgcttgcttttattgccgtcagGAGCTATTAGTTGACTGTTACcAAACCCACTGAGgtggggtactctccttgccctcggtcctagggtgagtgtgtatgtgtgca Alignment from Spaln_nt2Genome GAGCTGTTAGTTGACTGTTAC-AAACCCACTGAG agaaaccctgtcctcaagaagccactattgcttgcttttattgccgtcagGAGCTATTAGTTGACTGTTACCAAACCCACTGAGgtggggtactctccttgccctcggtcctagggtgagtgtgtatgtgtgca Alignment from Pairagon GAGCTGTTAGTTGACTGTTA-CAAACCCACTGAG agaaaccctgtcctcaagaagccactattgcttgcttttattgccgtcagGAGCTATTAGTTGACTGTTACCAAACCCACTGAGgtggggtactctccttgccctcggtcctagggtgagtgtgtatgtgtgca Alignment from Exonerate_protein2genome GAGCTGTTAGTTGACTGTTAC-AAACCCACTGAG agaaaccctgtcctcaagaagccactattgcttgcttttattgccgtcagGAGCTATTAGTTGACTGTTACCAAACCCACTGAGgtggggtactctccttgccctcggtcctagggtgagtgtgtatgtgtgca Alignment from Exonerate_coding2genome agaaaccctgtcctcaagaagccactattgcttgcttttattgccgtcaggagctattagttgactgttaccaaacccactgaggtggggtactctccttgccctcggtcctagggtgagtgtgtatgtgtgca Alignment from GeneWise agaaaccctgtcctcaagaagccactattgcttgcttttattgccgtcaggagctattagttgactgttaccaaacccactgaggtggggtactctccttgccctcggtcctagggtgagtgtgtatgtgtgca #### Ppp1r32_ID2842_9 --> 0 - 0 Original Alignment GTGCCTACTCCAGCCCCACAGTCTGCC-AGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG agtcagccttgcagcctcttgcctcatgacaggtgacctctttctcccagGTGCCTACCCCAGCCCCACAGTCTGCCCAGCATGAGCCACAGGTCCTACCGGCCCCCCCAGCGGATGCAACAGACCAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAACAAGgtaaaccttgctacactcatcccagtcccaacccatgctcccgagtcctg Alignment from CESAR GTGCCTACTCCAGCCCCACAGTCTGCC-AGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG agtcagccttgcagcctcttgcctcatgacaggtgacctctttctcccagGTGCCTACCCCAGCCCCACAGTCTGCCCAGCATGAGCCACAGGTCCTACCGGCCCCCCCAGCGGATGCAACAGACCAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAACAAGgtaaaccttgctacactcatcccagtcccaacccatgctcccgagtcctg Alignment from Spaln_aa2Genome GTGCCTACTCCAGCCCCACAGTCTGCC-AGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG agtcagccttgcagcctcttgcctcatgacaggtgacctctttctcccagGTGCCTACCCCAGCCCCACAGTCTGCCcAGCATGAGCCACAGGTCCTACCGGCCCCCCCAGCGGATGCAACAGACCAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAACAAGgtaaaccttgctacactcatcccagtcccaacccatgctcccgagtcctg Alignment from Spaln_nt2Genome GTGCCTACTCCAGCCCCACAGTCTG-CCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG agtcagccttgcagcctcttgcctcatgacaggtgacctctttctcccagGTGCCTACCCCAGCCCCACAGTCTGCCCAGCATGAGCCACAGGTCCTACCGGCCCCCCCAGCGGATGCAACAGACCAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAACAAGgtaaaccttgctacactcatcccagtcccaacccatgctcccgagtcctg Alignment from Pairagon GTGCCTACTCCAGCCCCACAGTCTG-CCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG agtcagccttgcagcctcttgcctcatgacaggtgacctctttctcccagGTGCCTACCCCAGCCCCACAGTCTGCCCAGCATGAGCCACAGGTCCTACCGGCCCCCCCAGCGGATGCAACAGACCAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAACAAGgtaaaccttgctacactcatcccagtcccaacccatgctcccgagtcctg Alignment from Exonerate_protein2genome GTGCCTACTCCAGCCCCACAGTCTGCC-AGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG agtcagccttgcagcctcttgcctcatgacaggtgacctctttctcccagGTGCCTACCCCAGCCCCACAGTCTGCCCAGCATGAGCCACAGGTCCTACCGGCCCCCCCAGCGGATGCAACAGACCAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAACAAGgtaaaccttgctacactcatcccagtcccaacccatgctcccgagtcctg Alignment from Exonerate_coding2genome GTGCCTACTCCAGCCCCACAGTCTGCC-AGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG agtcagccttgcagcctcttgcctcatgacaggtgacctctttctcccagGTGCCTACCCCAGCCCCACAGTCTGCCCAGCATGAGCCACAGGTCCTACCGGCCCCCCCAGCGGATGCAACAGACCAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAACAAGgtaaaccttgctacactcatcccagtcccaacccatgctcccgagtcctg Alignment from GeneWise GTGCCTACTCCAGCCCCACAGTCTGCC-AGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG agtcagccttgcagcctcttgcctcatgacaggtgacctctttctcccagGTGCCTACCCCAGCCCCACAGTCTGCCCAGCATGAGCCACAGGTCCTACCGGCCCCCCCAGCGGATGCAACAGACCAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAACAAGgtaaaccttgctacactcatcccagtcccaacccatgctcccgagtcctg #### Ppp1r32_ID2844_7 --> 0 - 0 Original Alignment GTCCTCCATCCAGGACGGAGTATCACC-AAGTCAGACTACCTCCCTGTAACTCACCCTCAG tctgccacacacatgtattttccactgtcaaacctccttttctccttcagGTCCTCCATCCAGGACGGAGTATCACCCAAGTCAGACTACCTCCCTCTAACTCACCCTCAGgtgagttctgtgttgctgaggggacagggccacctatgggtacagttata Alignment from CESAR GTCCTCCATCCAGGACGGAGTATCACC-AAGTCAGACTACCTCCCTGTAACTCACCCTCAG tctgccacacacatgtattttccactgtcaaacctccttttctccttcagGTCCTCCATCCAGGACGGAGTATCACCCAAGTCAGACTACCTCCCTCTAACTCACCCTCAGgtgagttctgtgttgctgaggggacagggccacctatgggtacagttata Alignment from Spaln_aa2Genome GTCCTCCATCCAGGACGGAGTATCACC-AAGTCAGACTACCTCCCTGTAACTCACCCTCAG tctgccacacacatgtattttccactgtcaaacctccttttctccttcagGTCCTCCATCCAGGACGGAGTATCACCcAAGTCAGACTACCTCCCTCTAACTCACCCTCAGgtgagttctgtgttgctgaggggacagggccacctatgggtacagttata Alignment from Spaln_nt2Genome GTCCTCCATCCAGGACGGAGTATCA-CCAAGTCAGACTACCTCCCTGTAACTCACCCTCAG tctgccacacacatgtattttccactgtcaaacctccttttctccttcagGTCCTCCATCCAGGACGGAGTATCACCCAAGTCAGACTACCTCCCTCTAACTCACCCTCAGgtgagttctgtgttgctgaggggacagggccacctatgggtacagttata Alignment from Pairagon GTCCTCCATCCAGGACGGAGTATCA-CCAAGTCAGACTACCTCCCTGTAACTCACCCTCAG tctgccacacacatgtattttccactgtcaaacctccttttctccttcagGTCCTCCATCCAGGACGGAGTATCACCCAAGTCAGACTACCTCCCTCTAACTCACCCTCAGgtgagttctgtgttgctgaggggacagggccacctatgggtacagttata Alignment from Exonerate_protein2genome GTCCTCCATCCAGGACGGAGTATCACC-AAGTCAGACTACCTCCCTGTAACTCACCCTCAG tctgccacacacatgtattttccactgtcaaacctccttttctccttcagGTCCTCCATCCAGGACGGAGTATCACCCAAGTCAGACTACCTCCCTCTAACTCACCCTCAGgtgagttctgtgttgctgaggggacagggccacctatgggtacagttata Alignment from Exonerate_coding2genome GTCCTCCATCCAGGACGGAGTATCACC-AAGTCAGACTACCTCCCTGTAACTCACCCTCAG tctgccacacacatgtattttccactgtcaaacctccttttctccttcagGTCCTCCATCCAGGACGGAGTATCACCCAAGTCAGACTACCTCCCTCTAACTCACCCTCAGgtgagttctgtgttgctgaggggacagggccacctatgggtacagttata Alignment from GeneWise GTCCTCCATCCAGGACGGAGTATCACC-AAGTCAGACTACCTCCCTGTAACTCACCCTCAG tctgccacacacatgtattttccactgtcaaacctccttttctccttcagGTCCTCCATCCAGGACGGAGTATCACCCAAGTCAGACTACCTCCCTCTAACTCACCCTCAGgtgagttctgtgttgctgaggggacagggccacctatgggtacagttata #### Pprc1_ID9715_3 --> 0 - 0 Original Alignment AGCAGATTATCTCTGGAGGACCAGAATGAAATGTCGCTGCTCACAGCTCTGACGGAGATCTTGGACAATGCAGATTCTGAGAACCTGTCCCCTTTTGACACCATT-CCTGATTCAGAGCTGCTCGTGTCCCCTCGGGAGAGCTCCTCT agaaggttattagagatcctgttgggggtcactgtttacccccaatgtagAGCAGATTATCTCTGGAGGACCAGAATGAAATGTCTCTGCTCACATCTCTGATGGAGATCTTGGACAATGCAGATTCTGAGAATCTGTCCCCATTTGACACCATCCTCTGATTCAGAGCTGCTCGTGTCCCCTCGGGAGAGCTCCTCTgtgagtattgcatcagggagggaggcaaggctagtctgaagattccaacc Alignment from CESAR AGCAGATTATCTCTGGAGGACCAGAATGAAATGTCGCTGCTCACAGCTCTGACGGAGATCTTGGACAATGCAGATTCTGAGAACCTGTCCCCTTTTGACACCATT-CCTGATTCAGAGCTGCTCGTGTCCCCTCGGGAGAGCTCCTCT agaaggttattagagatcctgttgggggtcactgtttacccccaatgtagAGCAGATTATCTCTGGAGGACCAGAATGAAATGTCTCTGCTCACATCTCTGATGGAGATCTTGGACAATGCAGATTCTGAGAATCTGTCCCCATTTGACACCATCCTCTGATTCAGAGCTGCTCGTGTCCCCTCGGGAGAGCTCCTCTgtgagtattgcatcagggagggaggcaaggctagtctgaagattccaacc Alignment from Spaln_aa2Genome AGCAGATTATCTCTGGAGGACCAGAATGAAATGTCGCTGCTCACAGCTCTGACGGAGATCTTGGACAATGCAGATTCTGAGAACCTGTCCCCTTTTGACACCATT-CCTGATTCAGAGCTGCTCGTGTCCCCTCGGGAGAGCTCCTCT agaaggttattagagatcctgttgggggtcactgtttacccccaatgtagAGCAGATTATCTCTGGAGGACCAGAATGAAATGTCTCTGCTCACATCTCTGATGGAGATCTTGGACAATGCAGATTCTGAGAATCTGTCCCCATTTGACACCATCcTCTGATTCAGAGCTGCTCGTGTCCCCTCGGGAGAGCTCCTCTgtgagtattgcatcagggagggaggcaaggctagtctgaagattccaacc Alignment from Spaln_nt2Genome AGCAGATTATCTCTGGAGGACCAGAATGAAATGTCGCTGCTCACAGCTCTGACGGAGATCTTGGACAATGCAGATTCTGAGAACCTGTCCCCTTTTGACACCATTC-CTGATTCAGAGCTGCTCGTGTCCCCTCGGGAGAGCTCCTCT agaaggttattagagatcctgttgggggtcactgtttacccccaatgtagAGCAGATTATCTCTGGAGGACCAGAATGAAATGTCTCTGCTCACATCTCTGATGGAGATCTTGGACAATGCAGATTCTGAGAATCTGTCCCCATTTGACACCATCCTCTGATTCAGAGCTGCTCGTGTCCCCTCGGGAGAGCTCCTCTgtgagtattgcatcagggagggaggcaaggctagtctgaagattccaacc Alignment from Pairagon AGCAGATTATCTCTGGAGGACCAGAATGAAATGTCGCTGCTCACAGCTCTGACGGAGATCTTGGACAATGCAGATTCTGAGAACCTGTCCCCTTTTGACACCATTC-CTGATTCAGAGCTGCTCGTGTCCCCTCGGGAGAGCTCCTCT agaaggttattagagatcctgttgggggtcactgtttacccccaatgtagAGCAGATTATCTCTGGAGGACCAGAATGAAATGTCTCTGCTCACATCTCTGATGGAGATCTTGGACAATGCAGATTCTGAGAATCTGTCCCCATTTGACACCATCCTCTGATTCAGAGCTGCTCGTGTCCCCTCGGGAGAGCTCCTCTgtgagtattgcatcagggagggaggcaaggctagtctgaagattccaacc Alignment from Exonerate_protein2genome AGCAGATTATCTCTGGAGGACCAGAATGAAATGTCGCTGCTCACAGCTCTGACGGAGATCTTGGACAATGCAGATTCTGAGAACCTGTCCCCTTTTGACACCATT-CCTGATTCAGAGCTGCTCGTGTCCCCTCGGGAGAGCTCCTCT agaaggttattagagatcctgttgggggtcactgtttacccccaatgtagAGCAGATTATCTCTGGAGGACCAGAATGAAATGTCTCTGCTCACATCTCTGATGGAGATCTTGGACAATGCAGATTCTGAGAATCTGTCCCCATTTGACACCATCCTCTGATTCAGAGCTGCTCGTGTCCCCTCGGGAGAGCTCCTCTgtgagtattgcatcagggagggaggcaaggctagtctgaagattccaacc Alignment from Exonerate_coding2genome AGCAGATTATCTCTGGAGGACCAGAATGAAATGTCGCTGCTCACAGCTCTGACGGAGATCTTGGACAATGCAGATTCTGAGAACCTGTCCCCTTTTGACACCATT-CCTGATTCAGAGCTGCTCGTGTCCCCTCGGGAGAGCTCCTCT agaaggttattagagatcctgttgggggtcactgtttacccccaatgtagAGCAGATTATCTCTGGAGGACCAGAATGAAATGTCTCTGCTCACATCTCTGATGGAGATCTTGGACAATGCAGATTCTGAGAATCTGTCCCCATTTGACACCATCCTCTGATTCAGAGCTGCTCGTGTCCCCTCGGGAGAGCTCCTCTgtgagtattgcatcagggagggaggcaaggctagtctgaagattccaacc Alignment from GeneWise AGCAGATTATCTCTGGAGGACCAGAATGAAATGTCGCTGCTCACAGCTCTGACGGAGATCTTGGACAATGCAGATTCTGAGAACCTGTCCCCTTTTGACACCATT-CCTGATTCAGAGCTGCTCGTGTCCCCTCGGGAGAGCTCCTCT agaaggttattagagatcctgttgggggtcactgtttacccccaatgtagAGCAGATTATCTCTGGAGGACCAGAATGAAATGTCTCTGCTCACATCTCTGATGGAGATCTTGGACAATGCAGATTCTGAGAATCTGTCCCCATTTGACACCATCCTCTGATTCAGAGCTGCTCGTGTCCCCTCGGGAGAGCTCCTCTgtgagtattgcatcagggagggaggcaaggctagtctgaagattccaacc #### Pprc1_ID9716_4 --> 0 - 0 Original Alignment CTGCACAAGCTGCTCAATCTCTCTCGGACACCCCCAGAACGTGACCTTATCACCCCAATT-GACCCTTTGGGGCCCAGCACAGGAAGTAGTCGGGTGAGTGGG cctctatatatagctgtgcaaaaactgataaacaataaacaaaacaacagTTGCACAAGCTCCTGAATCTCTCTCGGACACCCCCAGAACGTGATCTTATCACCCCAATTCGACCCTTTGGGGCCCAGCACAGGAAGTAGTCGAGTGAGTGGGgtaagtgatctaggacccttctggactcacagatggggagggcatggaga Alignment from CESAR CTGCACAAGCTGCTCAATCTCTCTCGGACACCCCCAGAACGTGACCTTATCACCCCAATT-GACCCTTTGGGGCCCAGCACAGGAAGTAGTCGGGTGAGTGGG cctctatatatagctgtgcaaaaactgataaacaataaacaaaacaacagTTGCACAAGCTCCTGAATCTCTCTCGGACACCCCCAGAACGTGATCTTATCACCCCAATTCGACCCTTTGGGGCCCAGCACAGGAAGTAGTCGAGTGAGTGGGgtaagtgatctaggacccttctggactcacagatggggagggcatggaga Alignment from Spaln_aa2Genome CTGCACAAGCTGCTCAATCTCTCTCGGACACCCCCAGAACGTGACCTTATCACCCCAATTGAC-CCTTTGGGGCCCAGCACAGGAAGTAGTCGGGTGAGTGGG cctctatatatagctgtgcaaaaactgataaacaataaacaaaacaacagTTGCACAAGCTCCTGAATCTCTCTCGGACACCCCCAGAACGTGATCTTATCACCCCAATTCGAcCCTTTGGGGCCCAGCACAGGAAGTAGTCGAGTGAGTGGGgtaagtgatctaggacccttctggactcacagatggggagggcatggaga Alignment from Spaln_nt2Genome CTGCACAAGCTGCTCAATCTCTCTCGGACACCCCCAGAACGTGACCTTATCACCCCAATT-GACCCTTTGGGGCCCAGCACAGGAAGTAGTCGGGTGAGTGGG cctctatatatagctgtgcaaaaactgataaacaataaacaaaacaacagTTGCACAAGCTCCTGAATCTCTCTCGGACACCCCCAGAACGTGATCTTATCACCCCAATTCGACCCTTTGGGGCCCAGCACAGGAAGTAGTCGAGTGAGTGGGgtaagtgatctaggacccttctggactcacagatggggagggcatggaga Alignment from Pairagon CTGCACAAGCTGCTCAATCTCTCTCGGACACCCCCAGAACGTGACCTTATCACCCCAATT-GACCCTTTGGGGCCCAGCACAGGAAGTAGTCGGGTGAGTGGG cctctatatatagctgtgcaaaaactgataaacaataaacaaaacaacagTTGCACAAGCTCCTGAATCTCTCTCGGACACCCCCAGAACGTGATCTTATCACCCCAATTCGACCCTTTGGGGCCCAGCACAGGAAGTAGTCGAGTGAGTGGGgtaagtgatctaggacccttctggactcacagatggggagggcatggaga Alignment from Exonerate_protein2genome CTGCACAAGCTGCTCAATCTCTCTCGGACACCCCCAGAACGTGACCTTATCACCCCAATT-GACCCTTTGGGGCCCAGCACAGGAAGTAGTCGGGTGAGTGGG cctctatatatagctgtgcaaaaactgataaacaataaacaaaacaacagTTGCACAAGCTCCTGAATCTCTCTCGGACACCCCCAGAACGTGATCTTATCACCCCAATTCGACCCTTTGGGGCCCAGCACAGGAAGTAGTCGAGTGAGTGGGgtaagtgatctaggacccttctggactcacagatggggagggcatggaga Alignment from Exonerate_coding2genome CTGCACAAGCTGCTCAATCTCTCTCGGACACCCCCAGAACGTGACCTTATCACCCCAATT-GACCCTTTGGGGCCCAGCACAGGAAGTAGTCGGGTGAGTGGG cctctatatatagctgtgcaaaaactgataaacaataaacaaaacaacagTTGCACAAGCTCCTGAATCTCTCTCGGACACCCCCAGAACGTGATCTTATCACCCCAATTCGACCCTTTGGGGCCCAGCACAGGAAGTAGTCGAGTGAGTGGGgtaagtgatctaggacccttctggactcacagatggggagggcatggaga Alignment from GeneWise CTGCACAAGCTGCTCAATCTCTCTCGGACACCCCCAGAACGTGACCTTATCACCCCA-ATTGACCCTTTGGGGCCCAGCACAGGAAGTAGTCGGGTGAGTGGG cctctatatatagctgtgcaaaaactgataaacaataaacaaaacaacagTTGCACAAGCTCCTGAATCTCTCTCGGACACCCCCAGAACGTGATCTTATCACCCCAATTCGACCCTTTGGGGCCCAGCACAGGAAGTAGTCGAGTGAGTGGGgtaagtgatctaggacccttctggactcacagatggggagggcatggaga #### Pprc1_ID9723_11 --> 1 - 0 Original Alignment gTACAGCTCTTACCGTGCAAATGACCATTACCAAAGG-CAGAGAGTGCTACAGAAGGAGCGTGCAATA gagttctgaatcttgacttgtctggggataaaatatgtctgtctgtccaggTACAGCTCTTATCATGCAAATGACCATTACCAAAGGCCAGAGAGTGCTACAGAAGGAGCGTGCAATAgtacgtcgggcagtaggtcagggggggagggagaggtgtgctgtgtgccg Alignment from CESAR gTACAGCTCTTACCGTGCAAATGACCATTACCAAAGG-CAGAGAGTGCTACAGAAGGAGCGTGCAATA gagttctgaatcttgacttgtctggggataaaatatgtctgtctgtccaggTACAGCTCTTATCATGCAAATGACCATTACCAAAGGCCAGAGAGTGCTACAGAAGGAGCGTGCAATAgtacgtcgggcagtaggtcagggggggagggagaggtgtgctgtgtgccg Alignment from Spaln_aa2Genome GTACAGCTCTTACCGTGCAAATGACCATTACCAAAGG-CAGAGAGTGCTACAGAAGGAGCGTGCAATA gagttctgaatcttgacttgtctggggataaaatatgtctgtctgtccagGTACAGCTCTTATCATGCAAATGACCATTACCAAAGGcCAGAGAGTGCTACAGAAGGAGCGTGCAATAgtacgtcgggcagtaggtcagggggggagggagaggtgtgctgtgtgccg Alignment from Spaln_nt2Genome GTACAGCTCTTACCGTGCAAATGACCATTACCAAAGG-CAGAGAGTGCTACAGAAGGAGCGTGCAATA gagttctgaatcttgacttgtctggggataaaatatgtctgtctgtccagGTACAGCTCTTATCATGCAAATGACCATTACCAAAGGCCAGAGAGTGCTACAGAAGGAGCGTGCAATAgtacgtcgggcagtaggtcagggggggagggagaggtgtgctgtgtgccg Alignment from Pairagon GTACAGCTCTTACCGTGCAAATGACCATTACCAAAGG-CAGAGAGTGCTACAGAAGGAGCGTGCAATA gagttctgaatcttgacttgtctggggataaaatatgtctgtctgtccagGTACAGCTCTTATCATGCAAATGACCATTACCAAAGGCCAGAGAGTGCTACAGAAGGAGCGTGCAATAgtacgtcgggcagtaggtcagggggggagggagaggtgtgctgtgtgccg Alignment from Exonerate_protein2genome GTACAGCTCTTACCGTGCAAATGACCATTACCAAAGG-CAGAGAGTGCTACAGAAGGAGCGTGCAATA gagttctgaatcttgacttgtctggggataaaatatgtctgtctgtccagGTACAGCTCTTATCATGCAAATGACCATTACCAAAGGCCAGAGAGTGCTACAGAAGGAGCGTGCAATAgtacgtcgggcagtaggtcagggggggagggagaggtgtgctgtgtgccg Alignment from Exonerate_coding2genome GTACAGCTCTTACCGTGCAAATGACCATTACCAAAGG-CAGAGAGTGCTACAGAAGGAGCGTGCAATA gagttctgaatcttgacttgtctggggataaaatatgtctgtctgtccagGTACAGCTCTTATCATGCAAATGACCATTACCAAAGGCCAGAGAGTGCTACAGAAGGAGCGTGCAATAgtacgtcgggcagtaggtcagggggggagggagaggtgtgctgtgtgccg Alignment from GeneWise GTACAGCTCTTACCGTGCAAATGACCATTACCAAAGG-CAGAGAGTGCTACAGAAGGAGCGTGCAATA gagttctgaatcttgacttgtctggggataaaatatgtctgtctgtccagGTACAGCTCTTATCATGCAAATGACCATTACCAAAGGCCAGAGAGTGCTACAGAAGGAGCGTGCAATAgtacgtcgggcagtaggtcagggggggagggagaggtgtgctgtgtgccg #### Pprc1_ID9724_12 --> 0 - 2 Original Alignment GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCGGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGT-ACCATTCATTTTCGTGTCCAAgg gccgtagctctggctcaaagtcacagtcggctagcaccccttctctgcagGAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCAGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTCACCATTCATTTTCGTGTCCAAgggtcagtcttaaagttgggttttttctgttgtgttttcctgttaaatttta Alignment from CESAR GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCGGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGT-ACCATTCATTTTCGTGTCCAAgg gccgtagctctggctcaaagtcacagtcggctagcaccccttctctgcagGAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCAGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTCACCATTCATTTTCGTGTCCAAgggtcagtcttaaagttgggttttttctgttgtgttttcctgttaaatttta Alignment from Spaln_aa2Genome GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCGGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGT-ACCATTCATTTTCGTGTCCAAGG gccgtagctctggctcaaagtcacagtcggctagcaccccttctctgcagGAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCAGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTcACCATTCATTTTCGTGTCCAAGGgtcagtcttaaagttgggttttttctgttgtgttttcctgttaaatttta Alignment from Spaln_nt2Genome GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCGGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGT-ACCATTCATTTTCGTGTCCAAGG gccgtagctctggctcaaagtcacagtcggctagcaccccttctctgcagGAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCAGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTCACCATTCATTTTCGTGTCCAAGGgtcagtcttaaagttgggttttttctgttgtgttttcctgttaaatttta Alignment from Pairagon GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCGGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGT-ACCATTCATTTTCGTGTCCAAGG gccgtagctctggctcaaagtcacagtcggctagcaccccttctctgcagGAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCAGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTCACCATTCATTTTCGTGTCCAAGGgtcagtcttaaagttgggttttttctgttgtgttttcctgttaaatttta Alignment from Exonerate_protein2genome GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCGGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGT-ACCATTCATTTTCGTGTCCAAGG gccgtagctctggctcaaagtcacagtcggctagcaccccttctctgcagGAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCAGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTCACCATTCATTTTCGTGTCCAAGGgtcagtcttaaagttgggttttttctgttgtgttttcctgttaaatttta Alignment from Exonerate_coding2genome GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCGGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGT-ACCATTCATTTTCGTGTCCAAGG gccgtagctctggctcaaagtcacagtcggctagcaccccttctctgcagGAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCAGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTCACCATTCATTTTCGTGTCCAAGGgtcagtcttaaagttgggttttttctgttgtgttttcctgttaaatttta Alignment from GeneWise GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCGGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGT-ACCATTCATTTTCGTGTCCAAGG gccgtagctctggctcaaagtcacagtcggctagcaccccttctctgcagGAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCAGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTCACCATTCATTTTCGTGTCCAAGGgtcagtcttaaagttgggttttttctgttgtgttttcctgttaaatttta #### Pprc1_ID9725_13 --> 1 - 1 Original Alignment tGACAACTATGGTTTCGTCACTTACCGTTATGCTGAAGAGGCATTTGCAGCCATTGAGAGTGGCCACAAG-TTGCGGCAGGCAGACGAGCAGCCCTTTGATCTCTGCTTTGGGGGCCGAAGGCAGTTCTGCAAGAGGAGTTACTCTGACCTTg ggaatgagaagaaacacctttgtacccacagaagctgtctttccttacagtGACAACTATGGTTTCGTCACATACCGTTATGCTGAAGAGGCATTTGCAGCCATTGAGAGTGGCCACAAGCCTGCGGCAGGCAGACGAGCAGCCCTTTGATCTCTGCTTTGGGGGCCGAAGGCAGTTCTGCAAGAGGAGTTACTCTGACCTTggtaggcgttggagatgggctacttgacagcatttgagaggaaaacttgct Alignment from CESAR tGACAACTATGGTTTCGTCACTTACCGTTATGCTGAAGAGGCATTTGCAGCCATTGAGAGTGGCCACAAG-TTGCGGCAGGCAGACGAGCAGCCCTTTGATCTCTGCTTTGGGGGCCGAAGGCAGTTCTGCAAGAGGAGTTACTCTGACCTTg ggaatgagaagaaacacctttgtacccacagaagctgtctttccttacagtGACAACTATGGTTTCGTCACATACCGTTATGCTGAAGAGGCATTTGCAGCCATTGAGAGTGGCCACAAGCCTGCGGCAGGCAGACGAGCAGCCCTTTGATCTCTGCTTTGGGGGCCGAAGGCAGTTCTGCAAGAGGAGTTACTCTGACCTTggtaggcgttggagatgggctacttgacagcatttgagaggaaaacttgct Alignment from Spaln_aa2Genome TGACAACTATGGTTTCGTCACTTACCGTTATGCTGAAGAGGCATTTGCAGCCATTGAGAGTGGCCACAAG-TTGCGGCAGGCAGACGAGCAGCCCTTTGATCTCTGCTTTGGGGGCCGAAGGCAGTTCTGCAAGAGGAGTTACTCTGACCTTG ggaatgagaagaaacacctttgtacccacagaagctgtctttccttacagTGACAACTATGGTTTCGTCACATACCGTTATGCTGAAGAGGCATTTGCAGCCATTGAGAGTGGCCACAAGcCTGCGGCAGGCAGACGAGCAGCCCTTTGATCTCTGCTTTGGGGGCCGAAGGCAGTTCTGCAAGAGGAGTTACTCTGACCTTGgtaggcgttggagatgggctacttgacagcatttgagaggaaaacttgct Alignment from Spaln_nt2Genome TGACAACTATGGTTTCGTCACTTACCGTTATGCTGAAGAGGCATTTGCAGCCATTGAGAGTGGCCACAAGT-TGCGGCAGGCAGACGAGCAGCCCTTTGATCTCTGCTTTGGGGGCCGAAGGCAGTTCTGCAAGAGGAGTTACTCTGACCTTG ggaatgagaagaaacacctttgtacccacagaagctgtctttccttacagTGACAACTATGGTTTCGTCACATACCGTTATGCTGAAGAGGCATTTGCAGCCATTGAGAGTGGCCACAAGCCTGCGGCAGGCAGACGAGCAGCCCTTTGATCTCTGCTTTGGGGGCCGAAGGCAGTTCTGCAAGAGGAGTTACTCTGACCTTGgtaggcgttggagatgggctacttgacagcatttgagaggaaaacttgct Alignment from Pairagon TGACAACTATGGTTTCGTCACTTACCGTTATGCTGAAGAGGCATTTGCAGCCATTGAGAGTGGCCACAAG-TTGCGGCAGGCAGACGAGCAGCCCTTTGATCTCTGCTTTGGGGGCCGAAGGCAGTTCTGCAAGAGGAGTTACTCTGACCTTG ggaatgagaagaaacacctttgtacccacagaagctgtctttccttacagTGACAACTATGGTTTCGTCACATACCGTTATGCTGAAGAGGCATTTGCAGCCATTGAGAGTGGCCACAAGCCTGCGGCAGGCAGACGAGCAGCCCTTTGATCTCTGCTTTGGGGGCCGAAGGCAGTTCTGCAAGAGGAGTTACTCTGACCTTGgtaggcgttggagatgggctacttgacagcatttgagaggaaaacttgct Alignment from Exonerate_protein2genome TGACAACTATGGTTTCGTCACTTACCGTTATGCTGAAGAGGCATTTGCAGCCATTGAGAGTGGCCACAAG-TTGCGGCAGGCAGACGAGCAGCCCTTTGATCTCTGCTTTGGGGGCCGAAGGCAGTTCTGCAAGAGGAGTTACTCTGACCTTG ggaatgagaagaaacacctttgtacccacagaagctgtctttccttacagTGACAACTATGGTTTCGTCACATACCGTTATGCTGAAGAGGCATTTGCAGCCATTGAGAGTGGCCACAAGCCTGCGGCAGGCAGACGAGCAGCCCTTTGATCTCTGCTTTGGGGGCCGAAGGCAGTTCTGCAAGAGGAGTTACTCTGACCTTGgtaggcgttggagatgggctacttgacagcatttgagaggaaaacttgct Alignment from Exonerate_coding2genome TGACAACTATGGTTTCGTCACTTACCGTTATGCTGAAGAGGCATTTGCAGCCATTGAGAGTGGCCACAAG-TTGCGGCAGGCAGACGAGCAGCCCTTTGATCTCTGCTTTGGGGGCCGAAGGCAGTTCTGCAAGAGGAGTTACTCTGACCTTG ggaatgagaagaaacacctttgtacccacagaagctgtctttccttacagTGACAACTATGGTTTCGTCACATACCGTTATGCTGAAGAGGCATTTGCAGCCATTGAGAGTGGCCACAAGCCTGCGGCAGGCAGACGAGCAGCCCTTTGATCTCTGCTTTGGGGGCCGAAGGCAGTTCTGCAAGAGGAGTTACTCTGACCTTGgtaggcgttggagatgggctacttgacagcatttgagaggaaaacttgct Alignment from GeneWise TGACAACTATGGTTTCGTCACTTACCGTTATGCTGAAGAGGCATTTGCAGCCATTGAGAGTGGCCACAAG-TTGCGGCAGGCAGACGAGCAGCCCTTTGATCTCTGCTTTGGGGGCCGAAGGCAGTTCTGCAAGAGGAGTTACTCTGACCTTG ggaatgagaagaaacacctttgtacccacagaagctgtctttccttacagTGACAACTATGGTTTCGTCACATACCGTTATGCTGAAGAGGCATTTGCAGCCATTGAGAGTGGCCACAAGCCTGCGGCAGGCAGACGAGCAGCCCTTTGATCTCTGCTTTGGGGGCCGAAGGCAGTTCTGCAAGAGGAGTTACTCTGACCTTGgtaggcgttggagatgggctacttgacagcatttgagaggaaaacttgct #### Prdx5_ID1852_5 --> 0 - 2 Original Alignment GCGACAGACTTATTATTGGAT-GATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAag tcctgggcctgtgcaggggcttctgaccttaatgattgttctcaataaagGTGACAGACCTATTATTGGATCGATTCTTTGGTGTCTCTCTTTGGGAATCGTTGGCTGAAAaggtatggtagaccccttcaccccagcctctccctgttggcacccagcccat Alignment from CESAR GCGACAGACTTATTATTGGAT-GATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAag tcctgggcctgtgcaggggcttctgaccttaatgattgttctcaataaagGTGACAGACCTATTATTGGATCGATTCTTTGGTGTCTCTCTTTGGGAATCGTTGGCTGAAAaggtatggtagaccccttcaccccagcctctccctgttggcacccagcccat Alignment from Spaln_aa2Genome GCGACAGACTTATTATTGGAT-GATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG tcctgggcctgtgcaggggcttctgaccttaatgattgttctcaataaagGTGACAGACCTATTATTGGATcGATTCTTTGGTGTCTCTCTTTGGGAATCGTTGGCTGAAAAGgtatggtagaccccttcaccccagcctctccctgttggcacccagcccat Alignment from Spaln_nt2Genome GCGACAGACTTATTATTGGAT-GATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG tcctgggcctgtgcaggggcttctgaccttaatgattgttctcaataaagGTGACAGACCTATTATTGGATCGATTCTTTGGTGTCTCTCTTTGGGAATCGTTGGCTGAAAAGgtatggtagaccccttcaccccagcctctccctgttggcacccagcccat Alignment from Pairagon GCGACAGACTTATTATTGGAT-GATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG tcctgggcctgtgcaggggcttctgaccttaatgattgttctcaataaagGTGACAGACCTATTATTGGATCGATTCTTTGGTGTCTCTCTTTGGGAATCGTTGGCTGAAAAGgtatggtagaccccttcaccccagcctctccctgttggcacccagcccat Alignment from Exonerate_protein2genome GCGACAGACTTATTATTGGAT-GATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG tcctgggcctgtgcaggggcttctgaccttaatgattgttctcaataaagGTGACAGACCTATTATTGGATCGATTCTTTGGTGTCTCTCTTTGGGAATCGTTGGCTGAAAAGgtatggtagaccccttcaccccagcctctccctgttggcacccagcccat Alignment from Exonerate_coding2genome GCGACAGACTTATTATTGGAT-GATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG tcctgggcctgtgcaggggcttctgaccttaatgattgttctcaataaagGTGACAGACCTATTATTGGATCGATTCTTTGGTGTCTCTCTTTGGGAATCGTTGGCTGAAAAGgtatggtagaccccttcaccccagcctctccctgttggcacccagcccat Alignment from GeneWise GACTTATTATTGGATGATTCTTTGGTGTCTCTCTTTGGGAATCGTCGGCTGAAAAG tcctgggcctgtgcaggggcttctgaccttaatgattgttctcaataaaggtgacagACCTATTATTGGATCGATTCTTTGGTGTCTCTCTTTGGGAATCGTTGGCTGAAAAGgtatggtagaccccttcaccccagcctctccctgttggcacccagcccat #### Prdx5_ID1853_4 --> 0 - 0 Original Alignment GTTCGGCTCCTGGCTGACCCCACT-GGAGCCTTTGGGAAG cagccagcaccttcactcaccaagccctgccctgctcctgttctctctagGTTCGGCTCCTGGCTGACCCCACTCGGAGCCTTTGGGAAGgtatgtgtgccttccttccctcagcgtgcagttggtcctggagggacaca Alignment from CESAR GTTCGGCTCCTGGCTGACCCCACT-GGAGCCTTTGGGAAG cagccagcaccttcactcaccaagccctgccctgctcctgttctctctagGTTCGGCTCCTGGCTGACCCCACTCGGAGCCTTTGGGAAGgtatgtgtgccttccttccctcagcgtgcagttggtcctggagggacaca Alignment from Spaln_aa2Genome GTTCGGCTCCTGGCTGACCCCACT-GGAGCCTTTGGGAAG cagccagcaccttcactcaccaagccctgccctgctcctgttctctctagGTTCGGCTCCTGGCTGACCCCACTcGGAGCCTTTGGGAAGgtatgtgtgccttccttccctcagcgtgcagttggtcctggagggacaca Alignment from Spaln_nt2Genome GTTCGGCTCCTGGCTGACCCCACT-GGAGCCTTTGGGAAG cagccagcaccttcactcaccaagccctgccctgctcctgttctctctagGTTCGGCTCCTGGCTGACCCCACTCGGAGCCTTTGGGAAGgtatgtgtgccttccttccctcagcgtgcagttggtcctggagggacaca Alignment from Pairagon GTTCGGCTCCTGGCTGACCCCACT-GGAGCCTTTGGGAAG cagccagcaccttcactcaccaagccctgccctgctcctgttctctctagGTTCGGCTCCTGGCTGACCCCACTCGGAGCCTTTGGGAAGgtatgtgtgccttccttccctcagcgtgcagttggtcctggagggacaca Alignment from Exonerate_protein2genome GTTCGGCTCCTGGCTGACCCCACT-GGAGCCTTTGGGAAG cagccagcaccttcactcaccaagccctgccctgctcctgttctctctagGTTCGGCTCCTGGCTGACCCCACTCGGAGCCTTTGGGAAGgtatgtgtgccttccttccctcagcgtgcagttggtcctggagggacaca Alignment from Exonerate_coding2genome GTTCGGCTCCTGGCTGACCCCACT-GGAGCCTTTGGGAAG cagccagcaccttcactcaccaagccctgccctgctcctgttctctctagGTTCGGCTCCTGGCTGACCCCACTCGGAGCCTTTGGGAAGgtatgtgtgccttccttccctcagcgtgcagttggtcctggagggacaca Alignment from GeneWise cagccagcaccttcactcaccaagccctgccctgctcctgttctctctaggttcggctcctggctgaccccactcggagcctttgggaaggtatgtgtgccttccttccctcagcgtgcagttggtcctggagggacaca #### Prpf19_ID3044_3 --> 2 - 0 Original Alignment ttGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCC-TTGCAGGATGAGTGG agttccttgggttctagttcttcatactttataactttttttaattttagttGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCCTTGCAGGATGAGTGGgtgcgttctatgaaaagaatgcacctttgggctaggacctggggattgaa Alignment from CESAR ttGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCC-TTGCAGGATGAGTGG agttccttgggttctagttcttcatactttataactttttttaattttagttGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCCTTGCAGGATGAGTGGgtgcgttctatgaaaagaatgcacctttgggctaggacctggggattgaa Alignment from Spaln_aa2Genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCC-TTGCAGGATGAGTGG agttccttgggttctagttcttcatactttataactttttttaattttagTTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCcTTGCAGGATGAGTGGgtgcgttctatgaaaagaatgcacctttgggctaggacctggggattgaa Alignment from Spaln_nt2Genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGC-CTTGCAGGATGAGTGG agttccttgggttctagttcttcatactttataactttttttaattttagTTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCCTTGCAGGATGAGTGGgtgcgttctatgaaaagaatgcacctttgggctaggacctggggattgaa Alignment from Pairagon TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAG-CCTTGCAGGATGAGTGG agttccttgggttctagttcttcatactttataactttttttaattttagTTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCCTTGCAGGATGAGTGGgtgcgttctatgaaaagaatgcacctttgggctaggacctggggattgaa Alignment from Exonerate_protein2genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCC-TTGCAGGATGAGTGG agttccttgggttctagttcttcatactttataactttttttaattttagTTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCCTTGCAGGATGAGTGGgtgcgttctatgaaaagaatgcacctttgggctaggacctggggattgaa Alignment from Exonerate_coding2genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGC-CTTGCAGGATGAGTGG agttccttgggttctagttcttcatactttataactttttttaattttagTTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCCTTGCAGGATGAGTGGgtgcgttctatgaaaagaatgcacctttgggctaggacctggggattgaa Alignment from GeneWise TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAA-GCCTTGCAGGATGAGTGG agttccttgggttctagttcttcatactttataactttttttaattttagTTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCCTTGCAGGATGAGTGGgtgcgttctatgaaaagaatgcacctttgggctaggacctggggattgaa #### Prpf19_ID3046_5 --> 2 - 0 Original Alignment ctCTGGCTACTCTGAAACCACAGGCTGGGCTT-ATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG tgatgtattgccttgtaatgtcccttttctgctcttgctcttcccctcagctCTGGCCACTCTGAAACCACAGGCTGGCCTTCATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTGGTGgtaagtgttccattttccgggccccgccagtaactggcacttcacaggag Alignment from CESAR ctCTGGCTACTCTGAAACCACAGGCTGGGCTT-ATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG acgtgtattgccttgtaatgtcccttttctgctcttgctcttcccctcagctCTGGCCACTCTGAAACCACAGGCTGGCCTTCATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTGGTGgtaagtgttccattttccgggccccgccagtaactggcacttcacaggag Alignment from Spaln_aa2Genome CTCTGGCTACTCTGAAACCACAGGCTGGGCTT-ATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG tgatgtattgccttgtaatgtcccttttctgctcttgctcttcccctcagCTCTGGCCACTCTGAAACCACAGGCTGGCCTTcATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTGGTGgtaagtgttccattttccgggccccgccagtaactggcacttcacaggag Alignment from Spaln_nt2Genome CTCTGGCTACTCTGAAACCACAGGCTGGGCTT-ATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG tgatgtattgccttgtaatgtcccttttctgctcttgctcttcccctcagCTCTGGCCACTCTGAAACCACAGGCTGGCCTTCATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTGGTGgtaagtgttccattttccgggccccgccagtaactggcacttcacaggag Alignment from Pairagon CTCTGGCTACTCTGAAACCACAGGCTGGGCTT-ATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG tgatgtattgccttgtaatgtcccttttctgctcttgctcttcccctcagCTCTGGCCACTCTGAAACCACAGGCTGGCCTTCATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTGGTGgtaagtgttccattttccgggccccgccagtaactggcacttcacaggag Alignment from Exonerate_protein2genome CTCTGGCTACTCTGAAACCACAGGCTGGGCTT-ATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG tgatgtattgccttgtaatgtcccttttctgctcttgctcttcccctcagCTCTGGCCACTCTGAAACCACAGGCTGGCCTTCATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTGGTGgtaagtgttccattttccgggccccgccagtaactggcacttcacaggag Alignment from Exonerate_coding2genome CTCTGGCTACTCTGAAACCACAGGCTGGGCTT-ATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG tgatgtattgccttgtaatgtcccttttctgctcttgctcttcccctcagCTCTGGCCACTCTGAAACCACAGGCTGGCCTTCATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTGGTGgtaagtgttccattttccgggccccgccagtaactggcacttcacaggag Alignment from GeneWise CTCTGGCTACTCTGAAACCACAGGCTGGG-CTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG tgatgtattgccttgtaatgtcccttttctgctcttgctcttcccctcagCTCTGGCCACTCTGAAACCACAGGCTGGCCTTCATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTGGTGgtaagtgttccattttccgggccccgccagtaactggcacttcacaggag #### Prpf19_ID3047_6 --> 0 - 0 Original Alignment GGTGCAGGAGAGCCC-ATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG gtggttgttggtgttgtgagcccctcccaagtgtttggggtgaatttcagGGTGCTGGAGAGCCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCCGAGATTATCCAGAAAgtaagtcatgtgcacctctgatgagactgcagtcccccgattactaccac Alignment from CESAR GGTGCAGGAGAG-CCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG gtggttgttggtgttgtgagcccctcccaagtgtttggggtgaatttcagGGTGCTGGAGAGCCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCCGAGATTATCCAGAAAgtaagtcatgtgcacctctgatgagactgcagtcccccgattactaccac Alignment from Spaln_aa2Genome GGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG gtggttgttggtgttgtgagcccctcccaagtgtttggggtgaatttcagggtgctggagAGC---CCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCCGAGATTATCCAGAAAgtaagtcatgtgcacctctgatgagactgcagtcccccgattactaccac Alignment from Spaln_nt2Genome GGTGCAGGAGAGCCC-ATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG gtggttgttggtgttgtgagcccctcccaagtgtttggggtgaatttcagGGTGCTGGAGAGCCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCCGAGATTATCCAGAAAgtaagtcatgtgcacctctgatgagactgcagtcccccgattactaccac Alignment from Pairagon GGTGCAGGAGAGCC-CATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG gtggttgttggtgttgtgagcccctcccaagtgtttggggtgaatttcagGGTGCTGGAGAGCCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCCGAGATTATCCAGAAAgtaagtcatgtgcacctctgatgagactgcagtcccccgattactaccac Alignment from Exonerate_protein2genome GGTGCAGGAGAG-CCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG gtggttgttggtgttgtgagcccctcccaagtgtttggggtgaatttcagGGTGCTGGAGAGCCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCCGAGATTATCCAGAAAgtaagtcatgtgcacctctgatgagactgcagtcccccgattactaccac Alignment from Exonerate_coding2genome GGGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG gtggttgttggtgttgtgagcccctcccaagtgtttggggtgaatttcagGGTGCTGGAGAGCCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCCGAGATTATCCAGAAAgtaagtcatgtgcacctctgatgagactgcagtcccccgattactaccac Alignment from GeneWise GAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG gtggttgttggtgttgtgagcccctcccaagtgtttggggtgaatttcagggtgctggagAGCCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCCGAGATTATCCAGAAAgtaagtcatgtgcacctctgatgagactgcagtcccccgattactaccac #### Prpf19_ID3048_7 --> 0 - 0 Original Alignment CTTCAAGACAAGGCTACTGTGCTAACCACG-GAGCGTAAGAAG tttgttcttacaaaattatttttctcacttcctttgttgttaaactatagCTTCAAGACAAGGCTACTGTGCTAACCACGCGAACGTAAGAAGgtaccttgttgcctgttgtgaacacttgcatttttggagagaagtgtagt Alignment from CESAR CTTCAAGACAAGGCTACTGTGCTAACCACG-GAGCGTAAGAAG tttgttcttacaaaattatttttctcacttcctttgttgttaaactatagCTTCAAGACAAGGCTACTGTGCTAACCACGCGAACGTAAGAAGgtaccttgttgcctgttgtgaacacttgcatttttggagagaagtgtagt Alignment from Spaln_aa2Genome CTTCAAGACAAGGCTACTGTGCTAACCACG-GAGCGTAAGAAG tttgttcttacaaaattatttttctcacttcctttgttgttaaactatagCTTCAAGACAAGGCTACTGTGCTAACCACGcGAACGTAAGAAGgtaccttgttgcctgttgtgaacacttgcatttttggagagaagtgtagt Alignment from Spaln_nt2Genome CTTCAAGACAAGGCTACTGTGCTAACCACG-GAGCGTAAGAAG tttgttcttacaaaattatttttctcacttcctttgttgttaaactatagCTTCAAGACAAGGCTACTGTGCTAACCACGCGAACGTAAGAAGgtaccttgttgcctgttgtgaacacttgcatttttggagagaagtgtagt Alignment from Pairagon CTTCAAGACAAGGCTACTGTGCTAACCACG-GAGCGTAAGAAG tttgttcttacaaaattatttttctcacttcctttgttgttaaactatagCTTCAAGACAAGGCTACTGTGCTAACCACGCGAACGTAAGAAGgtaccttgttgcctgttgtgaacacttgcatttttggagagaagtgtagt Alignment from Exonerate_protein2genome CTTCAAGACAAGGCTACTGTGCTAACCACG-GAGCGTAAGAAG tttgttcttacaaaattatttttctcacttcctttgttgttaaactatagCTTCAAGACAAGGCTACTGTGCTAACCACGCGAACGTAAGAAGgtaccttgttgcctgttgtgaacacttgcatttttggagagaagtgtagt Alignment from Exonerate_coding2genome CTTCAAGACAAGGCTACTGTGCTAACCACGGA-GCGTAAGAAG tttgttcttacaaaattatttttctcacttcctttgttgttaaactatagCTTCAAGACAAGGCTACTGTGCTAACCACGCGAACGTAAGAAGgtaccttgttgcctgttgtgaacacttgcatttttggagagaagtgtagt Alignment from GeneWise tttgttcttacaaaattatttttctcacttcctttgttgttaaactatagcttcaagacaaggctactgtgctaaccacgcgaacgtaagaaggtaccttgttgcctgttgtgaacacttgcatttttggagagaagtgtagt #### Prpf19_ID3053_12 --> 0 - 1 Original Alignment TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACT-AAGGTGACAGATGAGACCTCCGGCTGCt tgaaggccaccagacccacttgttcattctccactgaaactccgttgtagTACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTCAAGGTGACAGATGAGACCTCTGGCTGCtgtaagaggccatcgaggcactgagctcctttgcttgtactttgtcagtat Alignment from CESAR TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACT-AAGGTGACAGATGAGACCTCCGGCTGCt tgaaggccaccagacccacttgttcattctccactgaaactccgttgtagTACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTCAAGGTGACAGATGAGACCTCTGGCTGCtgtaagaggccatcgaggcactgagctcctttgcttgtactttgtcagtat Alignment from Spaln_aa2Genome TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACT-AAGGTGACAGATGAGACCTCCGGCTGCT tgaaggccaccagacccacttgttcattctccactgaaactccgttgtagTACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTcAAGGTGACAGATGAGACCTCTGGCTGCTgtaagaggccatcgaggcactgagctcctttgcttgtactttgtcagtat Alignment from Spaln_nt2Genome TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACT-AAGGTGACAGATGAGACCTCCGGCTGCT tgaaggccaccagacccacttgttcattctccactgaaactccgttgtagTACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTCAAGGTGACAGATGAGACCTCTGGCTGCTgtaagaggccatcgaggcactgagctcctttgcttgtactttgtcagtat Alignment from Pairagon TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACT-AAGGTGACAGATGAGACCTCCGGCTGCT tgaaggccaccagacccacttgttcattctccactgaaactccgttgtagTACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTCAAGGTGACAGATGAGACCTCTGGCTGCTgtaagaggccatcgaggcactgagctcctttgcttgtactttgtcagtat Alignment from Exonerate_protein2genome TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACT-AAGGTGACAGATGAGACCTCCGGCTGCT tgaaggccaccagacccacttgttcattctccactgaaactccgttgtagTACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTCAAGGTGACAGATGAGACCTCTGGCTGCTgtaagaggccatcgaggcactgagctcctttgcttgtactttgtcagtat Alignment from Exonerate_coding2genome TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACT-AAGGTGACAGATGAGACCTCCGGCTGCT tgaaggccaccagacccacttgttcattctccactgaaactccgttgtagTACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTCAAGGTGACAGATGAGACCTCTGGCTGCTgtaagaggccatcgaggcactgagctcctttgcttgtactttgtcagtat Alignment from GeneWise TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACT-AAGGTGACAGATGAGACCTCCGGCTGCT tgaaggccaccagacccacttgttcattctccactgaaactccgttgtagTACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTCAAGGTGACAGATGAGACCTCTGGCTGCTgtaagaggccatcgaggcactgagctcctttgcttgtactttgtcagtat #### Prpf19_ID3055_14 --> 0 - 0 Original Alignment GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTG-GACAACAACTTTGAG ctcctcacttaacagtggatgttttttccagtgtttgctgtgctttgcagGAGCATACCAATGTGGCGAACTTCCCTGGCCATTCTGGCCCTATTACCAGCATTGCCTTCTCTGAGAATGGGTACTACCTGGCGACAGCAGCAGATGATTCCTCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTCAAAATGTTGCAGCTGCGACAACAACTTTGAGgtaagttctcccccagtctcaattgcttctcctttgggtgtgctcctccc Alignment from CESAR GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTG-GACAACAACTTTGAG ctcctcacttaacagtggatgttttttccagtgtttgctgtgctttgcagGAGCATACCAATGTGGCGAACTTCCCTGGCCATTCTGGCCCTATTACCAGCATTGCCTTCTCTGAGAATGGGTACTACCTGGCGACAGCAGCAGATGATTCCTCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTCAAAATGTTGCAGCTGCGACAACAACTTTGAGgtaagttctcccccagtctcaattgcttctcctttgggtgtgctcctccc Alignment from Spaln_aa2Genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTG-GACAACAACTTTGAG ctcctcacttaacagtggatgttttttccagtgtttgctgtgctttgcagGAGCATACCAATGTGGCGAACTTCCCTGGCCATTCTGGCCCTATTACCAGCATTGCCTTCTCTGAGAATGGGTACTACCTGGCGACAGCAGCAGATGATTCCTCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTCAAAATGTTGCAGCTGcGACAACAACTTTGAGgtaagttctcccccagtctcaattgcttctcctttgggtgtgctcctccc Alignment from Spaln_nt2Genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTG-GACAACAACTTTGAG ctcctcacttaacagtggatgttttttccagtgtttgctgtgctttgcagGAGCATACCAATGTGGCGAACTTCCCTGGCCATTCTGGCCCTATTACCAGCATTGCCTTCTCTGAGAATGGGTACTACCTGGCGACAGCAGCAGATGATTCCTCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTCAAAATGTTGCAGCTGCGACAACAACTTTGAGgtaagttctcccccagtctcaattgcttctcctttgggtgtgctcctccc Alignment from Pairagon GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTG-GACAACAACTTTGAG ctcctcacttaacagtggatgttttttccagtgtttgctgtgctttgcagGAGCATACCAATGTGGCGAACTTCCCTGGCCATTCTGGCCCTATTACCAGCATTGCCTTCTCTGAGAATGGGTACTACCTGGCGACAGCAGCAGATGATTCCTCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTCAAAATGTTGCAGCTGCGACAACAACTTTGAGgtaagttctcccccagtctcaattgcttctcctttgggtgtgctcctccc Alignment from Exonerate_protein2genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTG-GACAACAACTTTGAG ctcctcacttaacagtggatgttttttccagtgtttgctgtgctttgcagGAGCATACCAATGTGGCGAACTTCCCTGGCCATTCTGGCCCTATTACCAGCATTGCCTTCTCTGAGAATGGGTACTACCTGGCGACAGCAGCAGATGATTCCTCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTCAAAATGTTGCAGCTGCGACAACAACTTTGAGgtaagttctcccccagtctcaattgcttctcctttgggtgtgctcctccc Alignment from Exonerate_coding2genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGA---CAACAACTTTGAG ctcctcacttaacagtggatgttttttccagtgtttgctgtgctttgcagGAGCATACCAATGTGGCGAACTTCCCTGGCCATTCTGGCCCTATTACCAGCATTGCCTTCTCTGAGAATGGGTACTACCTGGCGACAGCAGCAGATGATTCCTCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTCAAAATGTTGCAGCTG--CGACAACAACTTTGAGgtaagttctcccccagtctcaattgcttctcctttgggtgtgctcctccc Alignment from GeneWise GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAG-CTGGACAACAACTTTGAG ctcctcacttaacagtggatgttttttccagtgtttgctgtgctttgcagGAGCATACCAATGTGGCGAACTTCCCTGGCCATTCTGGCCCTATTACCAGCATTGCCTTCTCTGAGAATGGGTACTACCTGGCGACAGCAGCAGATGATTCCTCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTCAAAATGTTGCAGCTGCGACAACAACTTTGAGgtaagttctcccccagtctcaattgcttctcctttgggtgtgctcctccc #### Pygm_ID1679_3 --> 0 - 1 Original Alignment CTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGC-AATGGGGGCCTGGGACGCCTGGCAg ggtgtcttacgctggtacttgggcctcaccttgctctccatcccacccagCTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCCAATGGGGGCCTGGGACGCCTTGCAggtgtgtccatagcttgtggaggtggggcaagggagttactcacattggat Alignment from CESAR CTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGC-AATGGGGGCCTGGGACGCCTGGCAg ggtgtcttacgctggtacttgggcctcaccttgctctccatcccacccagCTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCCAATGGGGGCCTGGGACGCCTTGCAggtgtgtccatagcttgtggaggtggggcaagggagttactcacattggat Alignment from Spaln_aa2Genome CTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGC-AATGGGGGCCTGGGACGCCTGGCAG ggtgtcttacgctggtacttgggcctcaccttgctctccatcccacccagCTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCcAATGGGGGCCTGGGACGCCTTGCAGgtgtgtccatagcttgtggaggtggggcaagggagttactcacattggat Alignment from Spaln_nt2Genome CTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGG-CAATGGGGGCCTGGGACGCCTGGCAG ggtgtcttacgctggtacttgggcctcaccttgctctccatcccacccagCTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCCAATGGGGGCCTGGGACGCCTTGCAGgtgtgtccatagcttgtggaggtggggcaagggagttactcacattggat Alignment from Pairagon CTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGG-CAATGGGGGCCTGGGACGCCTGGCAG ggtgtcttacgctggtacttgggcctcaccttgctctccatcccacccagCTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCCAATGGGGGCCTGGGACGCCTTGCAGgtgtgtccatagcttgtggaggtggggcaagggagttactcacattggat Alignment from Exonerate_protein2genome CTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGC-AATGGGGGCCTGGGACGCCTGGCAG ggtgtcttacgctggtacttgggcctcaccttgctctccatcccacccagCTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCCAATGGGGGCCTGGGACGCCTTGCAGgtgtgtccatagcttgtggaggtggggcaagggagttactcacattggat Alignment from Exonerate_coding2genome CTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGC-AATGGGGGCCTGGGACGCCTGGCAG ggtgtcttacgctggtacttgggcctcaccttgctctccatcccacccagCTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCCAATGGGGGCCTGGGACGCCTTGCAGgtgtgtccatagcttgtggaggtggggcaagggagttactcacattggat Alignment from GeneWise CTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTGGCAGCT- ggtgtcttacgctggtacttgggcctcaccttgctctccatcccacccagCTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCCAATGGGGGCCTGGGACGCCTTGCAGGTgtgtccatagcttgtggaggtggggcaagggagttactcacattggat #### Pygm_ID1688_12 --> 1 - 0 Original Alignment cTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGC-TGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG gagggcacttcagaggataatggtgaccatgttcaaattatctccttaagcTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAAACCAATGGCATCACCCCTCGGCGCCTGGCTAGTACTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAGgtgggtgctcatggtatgactgatagcactttctacaagtggataccagc Alignment from CESAR cTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGC-TGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG gagggcacttcagaggataatggtgaccatgttcaaattatctccttaagcTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAAACCAATGGCATCACCCCTCGGCGCCTGGCTAGTACTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAGgtgggtgctcatggtatgactgatagcactttctacaagtggataccagc Alignment from Spaln_aa2Genome CTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGC-TGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG gagggcacttcagaggataatggtgaccatgttcaaattatctccttaagCTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAAACCAATGGCATCACCCCTCGGCGCcTGGCTAGTACTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAGgtgggtgctcatggtatgactgatagcactttctacaagtggataccagc Alignment from Spaln_nt2Genome CTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCG-CTGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG gagggcacttcagaggataatggtgaccatgttcaaattatctccttaagCTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAAACCAATGGCATCACCCCTCGGCGCCTGGCTAGTACTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAGgtgggtgctcatggtatgactgatagcactttctacaagtggataccagc Alignment from Pairagon CTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCG-CTGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG gagggcacttcagaggataatggtgaccatgttcaaattatctccttaagCTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAAACCAATGGCATCACCCCTCGGCGCCTGGCTAGTACTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAGgtgggtgctcatggtatgactgatagcactttctacaagtggataccagc Alignment from Exonerate_protein2genome CTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGC-TGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG gagggcacttcagaggataatggtgaccatgttcaaattatctccttaagCTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAAACCAATGGCATCACCCCTCGGCGCCTGGCTAGTACTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAGgtgggtgctcatggtatgactgatagcactttctacaagtggataccagc Alignment from Exonerate_coding2genome CTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGC-TGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG gagggcacttcagaggataatggtgaccatgttcaaattatctccttaagCTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAAACCAATGGCATCACCCCTCGGCGCCTGGCTAGTACTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAGgtgggtgctcatggtatgactgatagcactttctacaagtggataccagc Alignment from GeneWise CTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGG-CGCTGGCTGGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG gagggcacttcagaggataatggtgaccatgttcaaattatctccttaagCTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAAACCAATGGCATCACCCCTCGGCGCCTGGCTAGTACTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAGgtgggtgctcatggtatgactgatagcactttctacaagtggataccagc #### Pygm_ID1689_13 --> 0 - 0 Original Alignment CGCATTGGTGAGGACTACATCTCAGACCTGGACCAGCTGCGCAAGCTGCTC-TCCTATGTGGATGATGAAGCCTTTATCCGTGATGTGGCCAAAGTGAAACAG aggatgtagccaggctagggtagtcctgtaatagatggcttatcttccagCGCATTGGTGAGGACTATGTCTCAGACCTAGACCAGCTGCGCAAGCTGCTCCTCCTATGTGGATGATGAAGCTTTTATCCATGATGTGGCCAAAGTGAAACAGgtgaggggccctgcaacctggcaccctgccccatggctaacatttggaga Alignment from CESAR CGCATTGGTGAGGACTACATCTCAGACCTGGACCAGCTGCGCAAGCTGCTC-TCCTATGTGGATGATGAAGCCTTTATCCGTGATGTGGCCAAAGTGAAACAG aggatgtagccaggctagggtagtcctgtaatagatggcttatcttccagCGCATTGGTGAGGACTATGTCTCAGACCTAGACCAGCTGCGCAAGCTGCTCCTCCTATGTGGATGATGAAGCTTTTATCCATGATGTGGCCAAAGTGAAACAGgtgaggggccctgcaacctggcaccctgccccatggctaacatttggaga Alignment from Spaln_aa2Genome CGCATTGGTGAGGACTACATCTCAGACCTGGACCAGCTGCGCAAGCTGCTC-TCCTATGTGGATGATGAAGCCTTTATCCGTGATGTGGCCAAAGTGAAACAG aggatgtagccaggctagggtagtcctgtaatagatggcttatcttccagCGCATTGGTGAGGACTATGTCTCAGACCTAGACCAGCTGCGCAAGCTGCTCcTCCTATGTGGATGATGAAGCTTTTATCCATGATGTGGCCAAAGTGAAACAGgtgaggggccctgcaacctggcaccctgccccatggctaacatttggaga Alignment from Spaln_nt2Genome CGCATTGGTGAGGACTACATCTCAGACCTGGACCAGCTGCGCAAGCTGCT-CTCCTATGTGGATGATGAAGCCTTTATCCGTGATGTGGCCAAAGTGAAACAG aggatgtagccaggctagggtagtcctgtaatagatggcttatcttccagCGCATTGGTGAGGACTATGTCTCAGACCTAGACCAGCTGCGCAAGCTGCTCCTCCTATGTGGATGATGAAGCTTTTATCCATGATGTGGCCAAAGTGAAACAGgtgaggggccctgcaacctggcaccctgccccatggctaacatttggaga Alignment from Pairagon CGCATTGGTGAGGACTACATCTCAGACCTGGACCAGCTGCGCAAGCTGCT-CTCCTATGTGGATGATGAAGCCTTTATCCGTGATGTGGCCAAAGTGAAACAG aggatgtagccaggctagggtagtcctgtaatagatggcttatcttccagCGCATTGGTGAGGACTATGTCTCAGACCTAGACCAGCTGCGCAAGCTGCTCCTCCTATGTGGATGATGAAGCTTTTATCCATGATGTGGCCAAAGTGAAACAGgtgaggggccctgcaacctggcaccctgccccatggctaacatttggaga Alignment from Exonerate_protein2genome CGCATTGGTGAGGACTACATCTCAGACCTGGACCAGCTGCGCAAGCTGCTC-TCCTATGTGGATGATGAAGCCTTTATCCGTGATGTGGCCAAAGTGAAACAG aggatgtagccaggctagggtagtcctgtaatagatggcttatcttccagCGCATTGGTGAGGACTATGTCTCAGACCTAGACCAGCTGCGCAAGCTGCTCCTCCTATGTGGATGATGAAGCTTTTATCCATGATGTGGCCAAAGTGAAACAGgtgaggggccctgcaacctggcaccctgccccatggctaacatttggaga Alignment from Exonerate_coding2genome CGCATTGGTGAGGACTACATCTCAGACCTGGACCAGCTGCGCAAGCTGCTC-TCCTATGTGGATGATGAAGCCTTTATCCGTGATGTGGCCAAAGTGAAACAG aggatgtagccaggctagggtagtcctgtaatagatggcttatcttccagCGCATTGGTGAGGACTATGTCTCAGACCTAGACCAGCTGCGCAAGCTGCTCCTCCTATGTGGATGATGAAGCTTTTATCCATGATGTGGCCAAAGTGAAACAGgtgaggggccctgcaacctggcaccctgccccatggctaacatttggaga Alignment from GeneWise CGCATTGGTGAGGACTACATCTCAGACCTGGACCAGCTGCGCAAGCTGCTC-TCCTATGTGGATGATGAAGCCTTTATCCGTGATGTGGCCAAAGTGAAACAG aggatgtagccaggctagggtagtcctgtaatagatggcttatcttccagCGCATTGGTGAGGACTATGTCTCAGACCTAGACCAGCTGCGCAAGCTGCTCCTCCTATGTGGATGATGAAGCTTTTATCCATGATGTGGCCAAAGTGAAACAGgtgaggggccctgcaacctggcaccctgccccatggctaacatttggaga #### Pygm_ID1695_19 --> 1 - 0 Original Alignment gTTTAAAGTCTTTGCAGATTATGAGGAATACATT-AAATGCCAGGACAAAGTCAGTGAGTTGTACAAG ggacctggcctttgccctcacagagctcgatgtcccactaccgcctgcaggTTTAAAGTCTTTGCAGATCATGAGGAATACATTCAAATGCCAGGACAAAGTCAGTGAGTTGTACAAGgtgagttgtccagcggccaggggctggtagggctttgactctcgccggga Alignment from CESAR gTTTAAAGTCTTTGCAGATTATGAGGAATACATT-AAATGCCAGGACAAAGTCAGTGAGTTGTACAAG ggacctggcctttgccctcacagagctcgatgtcccactaccgcctgcaggTTTAAAGTCTTTGCAGATCATGAGGAATACATTCAAATGCCAGGACAAAGTCAGTGAGTTGTACAAGgtgagttgtccagcggccaggggctggtagggctttgactctcgccggga Alignment from Spaln_aa2Genome GTTTAAAGTCTTTGCAGATTATGAGGAATACATT-AAATGCCAGGACAAAGTCAGTGAGTTGTACAAG ggacctggcctttgccctcacagagctcgatgtcccactaccgcctgcagGTTTAAAGTCTTTGCAGATCATGAGGAATACATTcAAATGCCAGGACAAAGTCAGTGAGTTGTACAAGgtgagttgtccagcggccaggggctggtagggctttgactctcgccggga Alignment from Spaln_nt2Genome GTTTAAAGTCTTTGCAGATTATGAGGAATACATT-AAATGCCAGGACAAAGTCAGTGAGTTGTACAAG ggacctggcctttgccctcacagagctcgatgtcccactaccgcctgcagGTTTAAAGTCTTTGCAGATCATGAGGAATACATTCAAATGCCAGGACAAAGTCAGTGAGTTGTACAAGgtgagttgtccagcggccaggggctggtagggctttgactctcgccggga Alignment from Pairagon GTTTAAAGTCTTTGCAGATTATGAGGAATACATT-AAATGCCAGGACAAAGTCAGTGAGTTGTACAAG ggacctggcctttgccctcacagagctcgatgtcccactaccgcctgcagGTTTAAAGTCTTTGCAGATCATGAGGAATACATTCAAATGCCAGGACAAAGTCAGTGAGTTGTACAAGgtgagttgtccagcggccaggggctggtagggctttgactctcgccggga Alignment from Exonerate_protein2genome GTTTAAAGTCTTTGCAGATTATGAGGAATACATT-AAATGCCAGGACAAAGTCAGTGAGTTGTACAAG ggacctggcctttgccctcacagagctcgatgtcccactaccgcctgcagGTTTAAAGTCTTTGCAGATCATGAGGAATACATTCAAATGCCAGGACAAAGTCAGTGAGTTGTACAAGgtgagttgtccagcggccaggggctggtagggctttgactctcgccggga Alignment from Exonerate_coding2genome GTTTAAAGTCTTTGCAGATTATGAGGAATACATT-AAATGCCAGGACAAAGTCAGTGAGTTGTACAAG ggacctggcctttgccctcacagagctcgatgtcccactaccgcctgcagGTTTAAAGTCTTTGCAGATCATGAGGAATACATTCAAATGCCAGGACAAAGTCAGTGAGTTGTACAAGgtgagttgtccagcggccaggggctggtagggctttgactctcgccggga Alignment from GeneWise GTTTAAAGTCTTTGCAGATTATGAGGAATAC-ATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG ggacctggcctttgccctcacagagctcgatgtcccactaccgcctgcagGTTTAAAGTCTTTGCAGATCATGAGGAATACATTCAAATGCCAGGACAAAGTCAGTGAGTTGTACAAGgtgagttgtccagcggccaggggctggtagggctttgactctcgccggga #### Rab3il1_ID2648_4 --> 0 - 0 Original Alignment GAAGCTCACAAGATGGTTCGGGAAGCCAACATG-AAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG catttgtccgggctctagtgactactcattgttttttgttttggcttcagGAAGCTCACAAGATGGTTCGGGAAGCAAACATGCAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAGgtaatatccacccctgtgtgcctaagccagcccatggctcctggcattgc Alignment from CESAR GAAGCTCACAAGATGGTTCGGGAAGCCAACATG-AAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG catttgtccgggctctagtgactactcattgttttttgttttggcttcagGAAGCTCACAAGATGGTTCGGGAAGCAAACATGCAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAGgtaatatccacccctgtgtgcctaagccagcccatggctcctggcattgc Alignment from Spaln_aa2Genome GAAGCTCACAAGATGGTTCGGGAAGCCAACATG-AAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG catttgtccgggctctagtgactactcattgttttttgttttggcttcagGAAGCTCACAAGATGGTTCGGGAAGCAAACATGcAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAGgtaatatccacccctgtgtgcctaagccagcccatggctcctggcattgc Alignment from Spaln_nt2Genome GAAGCTCACAAGATGGTTCGGGAAGCCAACATG-AAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG catttgtccgggctctagtgactactcattgttttttgttttggcttcagGAAGCTCACAAGATGGTTCGGGAAGCAAACATGCAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAGgtaatatccacccctgtgtgcctaagccagcccatggctcctggcattgc Alignment from Pairagon GAAGCTCACAAGATGGTTCGGGAAGCCAACATG-AAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG catttgtccgggctctagtgactactcattgttttttgttttggcttcagGAAGCTCACAAGATGGTTCGGGAAGCAAACATGCAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAGgtaatatccacccctgtgtgcctaagccagcccatggctcctggcattgc Alignment from Exonerate_protein2genome GAAGCTCACAAGATGGTTCGGGAAGCCAACATG-AAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG catttgtccgggctctagtgactactcattgttttttgttttggcttcagGAAGCTCACAAGATGGTTCGGGAAGCAAACATGCAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAGgtaatatccacccctgtgtgcctaagccagcccatggctcctggcattgc Alignment from Exonerate_coding2genome GAAGCTCACAAGATGGTTCGGGAAGCCAACATG-AAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG catttgtccgggctctagtgactactcattgttttttgttttggcttcagGAAGCTCACAAGATGGTTCGGGAAGCAAACATGCAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAGgtaatatccacccctgtgtgcctaagccagcccatggctcctggcattgc Alignment from GeneWise GAAGCTCACAAGATGGTTCGGGAAGCCAACATG-AAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG catttgtccgggctctagtgactactcattgttttttgttttggcttcagGAAGCTCACAAGATGGTTCGGGAAGCAAACATGCAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAGgtaatatccacccctgtgtgcctaagccagcccatggctcctggcattgc #### Rasgrp2_ID1706_5 --> 1 - 0 Original Alignment cCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCT-GTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG ggaagcaggggacgtctccagcacaaggcctccctccctgtgctctctagcCCTACTTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTCGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTAGCAGAACATCTTACCTACCTGGAGTACCGTTCCTTCTGCAAGATCCTGgtaagtcctgaaggcttgtggtcagggtgaggcttgtggtcagggtgcag Alignment from CESAR cCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCT-GTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG ggaagcaggggacgtctccagcacaaggcctccctccctgtgctctctagcCCTACTTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTCGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTAGCAGAACATCTTACCTACCTGGAGTACCGTTCCTTCTGCAAGATCCTGgtaagtcctgaaggcttgtggtcagggtgaggcttgtggtcagggtgcag Alignment from Spaln_aa2Genome CCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCT-GTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG ggaagcaggggacgtctccagcacaaggcctccctccctgtgctctctagCCCTACTTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTcGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTAGCAGAACATCTTACCTACCTGGAGTACCGTTCCTTCTGCAAGATCCTGgtaagtcctgaaggcttgtggtcagggtgaggcttgtggtcagggtgcag Alignment from Spaln_nt2Genome CCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAA-CCCTGTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG ggaagcaggggacgtctccagcacaaggcctccctccctgtgctctctagCCCTACTTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTCGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTAGCAGAACATCTTACCTACCTGGAGTACCGTTCCTTCTGCAAGATCCTGgtaagtcctgaaggcttgtggtcagggtgaggcttgtggtcagggtgcag Alignment from Pairagon CCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCT-GTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG ggaagcaggggacgtctccagcacaaggcctccctccctgtgctctctagCCCTACTTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTCGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTAGCAGAACATCTTACCTACCTGGAGTACCGTTCCTTCTGCAAGATCCTGgtaagtcctgaaggcttgtggtcagggtgaggcttgtggtcagggtgcag Alignment from Exonerate_protein2genome CCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCT-GTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG ggaagcaggggacgtctccagcacaaggcctccctccctgtgctctctagCCCTACTTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTCGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTAGCAGAACATCTTACCTACCTGGAGTACCGTTCCTTCTGCAAGATCCTGgtaagtcctgaaggcttgtggtcagggtgaggcttgtggtcagggtgcag Alignment from Exonerate_coding2genome CCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCT-GTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG ggaagcaggggacgtctccagcacaaggcctccctccctgtgctctctagCCCTACTTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTCGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTAGCAGAACATCTTACCTACCTGGAGTACCGTTCCTTCTGCAAGATCCTGgtaagtcctgaaggcttgtggtcagggtgaggcttgtggtcagggtgcag Alignment from GeneWise CCCTACCTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCT-GTGGAACAGAAAAAGCGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTGGCAGAACATCTTACCTACCTGGAGTATCGTTCCTTCTGCAAGATCCTG ggaagcaggggacgtctccagcacaaggcctccctccctgtgctctctagCCCTACTTACAAATGGAAGCGGCAGGTGACCCAGCGGAACCCTCGTGGAACAGAAGAAACGCAAGATGTCCTTGTTGTTTGATCACTTGGAGCCTATGGAGCTAGCAGAACATCTTACCTACCTGGAGTACCGTTCCTTCTGCAAGATCCTGgtaagtcctgaaggcttgtggtcagggtgaggcttgtggtcagggtgcag #### Rasgrp2_ID1711_10 --> 0 - 0 Original Alignment CCAACCAGCCCCACCAGCTGCACCCCG-CCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctggccctggttgtctttgtctttcgcttttcagCCAACCAGCCCTACCAGCTGCACCCCACCCTCCCCGGCCCCCCGTGTTGGAAGAGTGGACCTCAGTTGCCAAACCTAAGCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtgcgcggcatggaggccgagggaatctgctgggaataggggtgtgtgat Alignment from CESAR CCAACCAGCCCCACCAGCTGCACCCCG-CCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctggccctggttgtctttgtctttcgcttttcagCCAACCAGCCCTACCAGCTGCACCCCACCCTCCCCGGCCCCCCGTGTTGGAAGAGTGGACCTCAGTTGCCAAACCTAAGCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtgcgcggcatggaggccgagggaatctgctgggaataggggtgtgtgat Alignment from Spaln_aa2Genome CCAACCAGCCCCACCAGCTGCACCCCG-CCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctggccctggttgtctttgtctttcgcttttcagCCAACCAGCCCTACCAGCTGCACCCCAcCCTCCCCGGCCCCCCGTGTTGGAAGAGTGGACCTCAGTTGCCAAACCTAAGCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtgcgcggcatggaggccgagggaatctgctgggaataggggtgtgtgat Alignment from Spaln_nt2Genome CCAACCAGCCCCACCAGCTGCA-CCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctggccctggttgtctttgtctttcgcttttcagCCAACCAGCCCTACCAGCTGCACCCCACCCTCCCCGGCCCCCCGTGTTGGAAGAGTGGACCTCAGTTGCCAAACCTAAGCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtgcgcggcatggaggccgagggaatctgctgggaataggggtgtgtgat Alignment from Pairagon CCAACCAGCCCCACCAGCTGCACCCCG-CCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctggccctggttgtctttgtctttcgcttttcagCCAACCAGCCCTACCAGCTGCACCCCACCCTCCCCGGCCCCCCGTGTTGGAAGAGTGGACCTCAGTTGCCAAACCTAAGCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtgcgcggcatggaggccgagggaatctgctgggaataggggtgtgtgat Alignment from Exonerate_protein2genome CCAACCAGCCCCACCAGCTGCACCCCG-CCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctggccctggttgtctttgtctttcgcttttcagCCAACCAGCCCTACCAGCTGCACCCCACCCTCCCCGGCCCCCCGTGTTGGAAGAGTGGACCTCAGTTGCCAAACCTAAGCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtgcgcggcatggaggccgagggaatctgctgggaataggggtgtgtgat Alignment from Exonerate_coding2genome CCAACCAGCCCCACCAGCTGCACCCCG-CCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctggccctggttgtctttgtctttcgcttttcagCCAACCAGCCCTACCAGCTGCACCCCACCCTCCCCGGCCCCCCGTGTTGGAAGAGTGGACCTCAGTTGCCAAACCTAAGCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtgcgcggcatggaggccgagggaatctgctgggaataggggtgtgtgat Alignment from GeneWise CCAACCAGCCCCACCAGCTGCACC-CCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctggccctggttgtctttgtctttcgcttttcagCCAACCAGCCCTACCAGCTGCACCCCACCCTCCCCGGCCCCCCGTGTTGGAAGAGTGGACCTCAGTTGCCAAACCTAAGCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtgcgcggcatggaggccgagggaatctgctgggaataggggtgtgtgat #### Rbp4_ID7524_3 --> 0 - 2 Original Alignment TTCTCTGGGCTC-TGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGag cagaggtggaacccagactccaatccccaacaatttcactgttaccacagTTCTCTGGGCTCCTGGTATGCTATTGCCAAAAAGGACCCCGAGGGGCTCTTTTTGCAAGACAACATCATTGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACCGCCAAGGGACGGGTCCGTCTTCTGaggtaattggcctctggtgggctgtgtgcagcatactgaactgcctgccacc Alignment from CESAR TTCTCTGGGCTC-TGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGag cagaggtggaacccagactccaatccccaacaatttcactgttaccacagTTCTCTGGGCTCCTGGTATGCTATTGCCAAAAAGGACCCCGAGGGGCTCTTTTTGCAAGACAACATCATTGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACCGCCAAGGGACGGGTCCGTCTTCTGaggtaattggcctctggtgggctgtgtgcagcatactgaactgcctgccacc Alignment from Spaln_aa2Genome TTCTCTGGGCTC-TGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG cagaggtggaacccagactccaatccccaacaatttcactgttaccacagTTCTCTGGGCTCcTGGTATGCTATTGCCAAAAAGGACCCCGAGGGGCTCTTTTTGCAAGACAACATCATTGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACCGCCAAGGGACGGGTCCGTCTTCTGAGgtaattggcctctggtgggctgtgtgcagcatactgaactgcctgccacc Alignment from Spaln_nt2Genome TTCTCTGGGCTC-TGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG cagaggtggaacccagactccaatccccaacaatttcactgttaccacagTTCTCTGGGCTCCTGGTATGCTATTGCCAAAAAGGACCCCGAGGGGCTCTTTTTGCAAGACAACATCATTGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACCGCCAAGGGACGGGTCCGTCTTCTGAGgtaattggcctctggtgggctgtgtgcagcatactgaactgcctgccacc Alignment from Pairagon TTCTCTGGGCT-CTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG cagaggtggaacccagactccaatccccaacaatttcactgttaccacagTTCTCTGGGCTCCTGGTATGCTATTGCCAAAAAGGACCCCGAGGGGCTCTTTTTGCAAGACAACATCATTGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACCGCCAAGGGACGGGTCCGTCTTCTGAGgtaattggcctctggtgggctgtgtgcagcatactgaactgcctgccacc Alignment from Exonerate_protein2genome TTCTCTGGGCTC-TGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG cagaggtggaacccagactccaatccccaacaatttcactgttaccacagTTCTCTGGGCTCCTGGTATGCTATTGCCAAAAAGGACCCCGAGGGGCTCTTTTTGCAAGACAACATCATTGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACCGCCAAGGGACGGGTCCGTCTTCTGAGgtaattggcctctggtgggctgtgtgcagcatactgaactgcctgccacc Alignment from Exonerate_coding2genome TTCTCTGGGCTC-TGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG cagaggtggaacccagactccaatccccaacaatttcactgttaccacagTTCTCTGGGCTCCTGGTATGCTATTGCCAAAAAGGACCCCGAGGGGCTCTTTTTGCAAGACAACATCATTGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACCGCCAAGGGACGGGTCCGTCTTCTGAGgtaattggcctctggtgggctgtgtgcagcatactgaactgcctgccacc Alignment from GeneWise ---------------------------------------------------------GGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG CAGAGGTGGAACCCAGACTCCAATCCCCAACAATTTCACTGTTACCACAGTTCTCTGGGCTCCTGGTATGCTATTGCCAAAAAGGACCCCGAGGGGCTCTTTTTGCAAGACAACATCATTGCTGAGTTTTCTGTGGACGAGAAGGGTCATATGAGCGCCACCGCCAAGGGACGGGTCCGTCTTCTGAGgtaattggcctctggtgggctgtgtgcagcatactgaactgcctgccacc #### Rbp4_ID7525_2 --> 0 - 0 Original Alignment GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTC-CGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccttgatcttctggccctgggtacacttggacttggtctttcagGGCAGACTCCGAGGTGAGATGGCGTGGGTGTGGGCGCTCGTGCTGCTGGCAGCTCTGGGAGGTGGCAGCGCTGAGCGCGACTGCAGGGTGAGCAGCTTCCCGAGTCAAGGAGAACTTCGACAAGGCTCGTgtaaccatcagcccaggtttcctaattcctgtgggtcagaggtggaaccc Alignment from CESAR GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTC-CGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccttgatcttctggccctgggtacacttggacttggtctttcagGGCAGACTCCGAGGTGAGATGGCGTGGGTGTGGGCGCTCGTGCTGCTGGCAGCTCTGGGAGGTGGCAGCGCTGAGCGCGACTGCAGGGTGAGCAGCTTCCCGAGTCAAGGAGAACTTCGACAAGGCTCGTgtaaccatcagcccaggtttcctaattcctgtgggtcagaggtggaaccc Alignment from Spaln_aa2Genome GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTC-CGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccttgatcttctggccctgggtacacttggacttggtctttcagGGCAGACTCCGAGGTGAGATGGCGTGGGTGTGGGCGCTCGTGCTGCTGGCAGCTCTGGGAGGTGGCAGCGCTGAGCGCGACTGCAGGGTGAGCAGCTTCcCGAGTCAAGGAGAACTTCGACAAGGCTCGTgtaaccatcagcccaggtttcctaattcctgtgggtcagaggtggaaccc Alignment from Spaln_nt2Genome GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTT-CCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccttgatcttctggccctgggtacacttggacttggtctttcagGGCAGACTCCGAGGTGAGATGGCGTGGGTGTGGGCGCTCGTGCTGCTGGCAGCTCTGGGAGGTGGCAGCGCTGAGCGCGACTGCAGGGTGAGCAGCTTCCCGAGTCAAGGAGAACTTCGACAAGGCTCGTgtaaccatcagcccaggtttcctaattcctgtgggtcagaggtggaaccc Alignment from Pairagon GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTT-CCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccttgatcttctggccctgggtacacttggacttggtctttcagGGCAGACTCCGAGGTGAGATGGCGTGGGTGTGGGCGCTCGTGCTGCTGGCAGCTCTGGGAGGTGGCAGCGCTGAGCGCGACTGCAGGGTGAGCAGCTTCCCGAGTCAAGGAGAACTTCGACAAGGCTCGTgtaaccatcagcccaggtttcctaattcctgtgggtcagaggtggaaccc Alignment from Exonerate_protein2genome GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTC-CGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccttgatcttctggccctgggtacacttggacttggtctttcagGGCAGACTCCGAGGTGAGATGGCGTGGGTGTGGGCGCTCGTGCTGCTGGCAGCTCTGGGAGGTGGCAGCGCTGAGCGCGACTGCAGGGTGAGCAGCTTCCCGAGTCAAGGAGAACTTCGACAAGGCTCGTgtaaccatcagcccaggtttcctaattcctgtgggtcagaggtggaaccc Alignment from Exonerate_coding2genome GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTC-CGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccttgatcttctggccctgggtacacttggacttggtctttcagGGCAGACTCCGAGGTGAGATGGCGTGGGTGTGGGCGCTCGTGCTGCTGGCAGCTCTGGGAGGTGGCAGCGCTGAGCGCGACTGCAGGGTGAGCAGCTTCCCGAGTCAAGGAGAACTTCGACAAGGCTCGTgtaaccatcagcccaggtttcctaattcctgtgggtcagaggtggaaccc Alignment from GeneWise GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTC-CGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccttgatcttctggccctgggtacacttggacttggtctttcagGGCAGACTCCGAGGTGAGATGGCGTGGGTGTGGGCGCTCGTGCTGCTGGCAGCTCTGGGAGGTGGCAGCGCTGAGCGCGACTGCAGGGTGAGCAGCTTCCCGAGTCAAGGAGAACTTCGACAAGGCTCGTgtaaccatcagcccaggtttcctaattcctgtgggtcagaggtggaaccc #### Rce1_ID575_7 --> 2 - 1 Original Alignment cgTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACA-GCTTTCCTCTTCATCCGCACAg ggggtagggtgggtatgtgggtgtggtcctgtgtgcctgcttctccccagcgTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACACGCTTTCCTCTTCATTCGCACAggtaagacctcagcttttcatggatcaaggcaaaggtctgatcagcttctt Alignment from CESAR cgTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACA-GCTTTCCTCTTCATCCGCACAg ggggtagggtgggtatgtgggtgtggtcctgtgtgcctgcttctccccagcgTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACACGCTTTCCTCTTCATTCGCACAggtaagacctcagcttttcatggatcaaggcaaaggtctgatcagcttctt Alignment from Spaln_aa2Genome CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACA-GCTTTCCTCTTCATCCGCACAG ggggtagggtgggtatgtgggtgtggtcctgtgtgcctgcttctccccagCGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACAcGCTTTCCTCTTCATTCGCACAGgtaagacctcagcttttcatggatcaaggcaaaggtctgatcagcttctt Alignment from Spaln_nt2Genome CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACA-GCTTTCCTCTTCATCCGCACAG ggggtagggtgggtatgtgggtgtggtcctgtgtgcctgcttctccccagCGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACACGCTTTCCTCTTCATTCGCACAGgtaagacctcagcttttcatggatcaaggcaaaggtctgatcagcttctt Alignment from Pairagon CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACA-GCTTTCCTCTTCATCCGCACAG ggggtagggtgggtatgtgggtgtggtcctgtgtgcctgcttctccccagCGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACACGCTTTCCTCTTCATTCGCACAGgtaagacctcagcttttcatggatcaaggcaaaggtctgatcagcttctt Alignment from Exonerate_protein2genome CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACA-GCTTTCCTCTTCATCCGCACAG ggggtagggtgggtatgtgggtgtggtcctgtgtgcctgcttctccccagCGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACACGCTTTCCTCTTCATTCGCACAGgtaagacctcagcttttcatggatcaaggcaaaggtctgatcagcttctt Alignment from Exonerate_coding2genome CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACA-GCTTTCCTCTTCATCCGCACAG ggggtagggtgggtatgtgggtgtggtcctgtgtgcctgcttctccccagCGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACACGCTTTCCTCTTCATTCGCACAGgtaagacctcagcttttcatggatcaaggcaaaggtctgatcagcttctt Alignment from GeneWise CGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACA-GCTTTCCTCTTCATCCGCACAG ggggtagggtgggtatgtgggtgtggtcctgtgtgcctgcttctccccagCGTTCCAGTTCTCCTACACCGCTGTCTTCGGTGCTTATACACGCTTTCCTCTTCATTCGCACAGgtaagacctcagcttttcatggatcaaggcaaaggtctgatcagcttctt #### Rce1_ID580_2 --> 1 - 0 Original Alignment gGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGC-GTGCTGCTCTGGAGGGAACTCACTGGCATCCAG atcggtgtggttgctgcaggcctcccaggtttactcttcacctcctccaggGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTTGTAGTGTCCAGCTTGTCCCCTCTTTGTCGTGCTGCTCTGGAGGGAACTCACTGGTATCCAGgtagcaaggaggagggtggggcacagggcagcaaagggaagaatctagaa Alignment from CESAR gGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGC-GTGCTGCTCTGGAGGGAACTCACTGGCATCCAG atcggtgtggttgctgcaggcctcccaggtttactcttcacctcctccaggGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTTGTAGTGTCCAGCTTGTCCCCTCTTTGTCGTGCTGCTCTGGAGGGAACTCACTGGTATCCAGgtagcaaggaggagggtggggcacagggcagcaaagggaagaatctagaa Alignment from Spaln_aa2Genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGC-GTGCTGCTCTGGAGGGAACTCACTGGCATCCAG atcggtgtggttgctgcaggcctcccaggtttactcttcacctcctccagGGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTTGTAGTGTCCAGCTTGTCCCCTCTTTGTcGTGCTGCTCTGGAGGGAACTCACTGGTATCCAGgtagcaaggaggagggtggggcacagggcagcaaagggaagaatctagaa Alignment from Spaln_nt2Genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTC-TTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG atcggtgtggttgctgcaggcctcccaggtttactcttcacctcctccagGGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTTGTAGTGTCCAGCTTGTCCCCTCTTTGTCGTGCTGCTCTGGAGGGAACTCACTGGTATCCAGgtagcaaggaggagggtggggcacagggcagcaaagggaagaatctagaa Alignment from Pairagon GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTG-CGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG atcggtgtggttgctgcaggcctcccaggtttactcttcacctcctccagGGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTTGTAGTGTCCAGCTTGTCCCCTCTTTGTCGTGCTGCTCTGGAGGGAACTCACTGGTATCCAGgtagcaaggaggagggtggggcacagggcagcaaagggaagaatctagaa Alignment from Exonerate_protein2genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGC-GTGCTGCTCTGGAGGGAACTCACTGGCATCCAG atcggtgtggttgctgcaggcctcccaggtttactcttcacctcctccagGGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTTGTAGTGTCCAGCTTGTCCCCTCTTTGTCGTGCTGCTCTGGAGGGAACTCACTGGTATCCAGgtagcaaggaggagggtggggcacagggcagcaaagggaagaatctagaa Alignment from Exonerate_coding2genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGC-GTGCTGCTCTGGAGGGAACTCACTGGCATCCAG atcggtgtggttgctgcaggcctcccaggtttactcttcacctcctccagGGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTTGTAGTGTCCAGCTTGTCCCCTCTTTGTCGTGCTGCTCTGGAGGGAACTCACTGGTATCCAGgtagcaaggaggagggtggggcacagggcagcaaagggaagaatctagaa Alignment from GeneWise GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGC-GTGCTGCTCTGGAGGGAACTCACTGGCATCCAG atcggtgtggttgctgcaggcctcccaggtttactcttcacctcctccagGGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTTGTAGTGTCCAGCTTGTCCCCTCTTTGTCGTGCTGCTCTGGAGGGAACTCACTGGTATCCAGgtagcaaggaggagggtggggcacagggcagcaaagggaagaatctagaa #### Rcor2_ID2092_3 --> 2 - 0 Original Alignment ttGACAAGTACATTGCAATGGCCAAGGAGAAG-CATGGCTATAACATTGAGCAG gtggtctttactgtggggcttctgtgcgtctcaaccgtttgtgtccccagttGACAAGTACATCGCAATGGCCAAGGAGAAGCCATGGCTATAACATTGAGCAGgtaagtgagggccctgagagatcctgagggatggaagtggggcccaccag Alignment from CESAR ttGACAAGTACATTGCAATGGCCAAGGAGAAG-CATGGCTATAACATTGAGCAG gtggtctttactgtggggcttctgtgcgtctcaaccgtttgtgtccccagttGACAAGTACATCGCAATGGCCAAGGAGAAGCCATGGCTATAACATTGAGCAGgtaagtgagggccctgagagatcctgagggatggaagtggggcccaccag Alignment from Spaln_aa2Genome TTGACAAGTACATTGCAATGGCCAAGGAGAAG-CATGGCTATAACATTGAGCAG gtggtctttactgtggggcttctgtgcgtctcaaccgtttgtgtccccagTTGACAAGTACATCGCAATGGCCAAGGAGAAGcCATGGCTATAACATTGAGCAGgtaagtgagggccctgagagatcctgagggatggaagtggggcccaccag Alignment from Spaln_nt2Genome TTGACAAGTACATTGCAATGGCCAAGGAGAAG-CATGGCTATAACATTGAGCAG gtggtctttactgtggggcttctgtgcgtctcaaccgtttgtgtccccagTTGACAAGTACATCGCAATGGCCAAGGAGAAGCCATGGCTATAACATTGAGCAGgtaagtgagggccctgagagatcctgagggatggaagtggggcccaccag Alignment from Pairagon TTGACAAGTACATTGCAATGGCCAAGGAGAAG-CATGGCTATAACATTGAGCAG gtggtctttactgtggggcttctgtgcgtctcaaccgtttgtgtccccagTTGACAAGTACATCGCAATGGCCAAGGAGAAGCCATGGCTATAACATTGAGCAGgtaagtgagggccctgagagatcctgagggatggaagtggggcccaccag Alignment from Exonerate_protein2genome TTGACAAGTACATTGCAATGGCCAAGGAGAAG-CATGGCTATAACATTGAGCAG gtggtctttactgtggggcttctgtgcgtctcaaccgtttgtgtccccagTTGACAAGTACATCGCAATGGCCAAGGAGAAGCCATGGCTATAACATTGAGCAGgtaagtgagggccctgagagatcctgagggatggaagtggggcccaccag Alignment from Exonerate_coding2genome TTGACAAGTACATTGCAATGGCCAAGGAGAAG-CATGGCTATAACATTGAGCAG gtggtctttactgtggggcttctgtgcgtctcaaccgtttgtgtccccagTTGACAAGTACATCGCAATGGCCAAGGAGAAGCCATGGCTATAACATTGAGCAGgtaagtgagggccctgagagatcctgagggatggaagtggggcccaccag Alignment from GeneWise TTGACAAGTACATTGCAATGGCCAAGGAG-AAGCATGGCTATAACATTGAGCAG gtggtctttactgtggggcttctgtgcgtctcaaccgtttgtgtccccagTTGACAAGTACATCGCAATGGCCAAGGAGAAGCCATGGCTATAACATTGAGCAGgtaagtgagggccctgagagatcctgagggatggaagtggggcccaccag #### Rcor2_ID2093_4 --> 0 - 0 Original Alignment GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAAC-TTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG cagtgtagtgctgccatggcaaaacctgctcctactgttggtcactgcagGCACTCGGCATGCTTCTGTGGCATAAACATGATGTGGAGAAATCACTAGCTGACCTAGCCAATCTTCACTCCCTTCCCAGATGAGTGGACAGTAGAGGACAAGGTGCTGTTTGAGCAGGCCTTTGGGTTCCATGGCAAGTGTTTCCAGCGTATCCAGCAGATGgtaagtctatgcttggggcccctcgaatgctcctcagccctttagtccca Alignment from CESAR GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAAC-TTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG cagtgtagtgctgccatggcaaaacctgctcctactgttggtcactgcagGCACTCGGCATGCTTCTGTGGCATAAACATGATGTGGAGAAATCACTAGCTGACCTAGCCAATCTTCACTCCCTTCCCAGATGAGTGGACAGTAGAGGACAAGGTGCTGTTTGAGCAGGCCTTTGGGTTCCATGGCAAGTGTTTCCAGCGTATCCAGCAGATGgtaagtctatgcttggggcccctcgaatgctcctcagccctttagtccca Alignment from Spaln_aa2Genome GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAAC-TTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG cagtgtagtgctgccatggcaaaacctgctcctactgttggtcactgcagGCACTCGGCATGCTTCTGTGGCATAAACATGATGTGGAGAAATCACTAGCTGACCTAGCCAATcTTCACTCCCTTCCCAGATGAGTGGACAGTAGAGGACAAGGTGCTGTTTGAGCAGGCCTTTGGGTTCCATGGCAAGTGTTTCCAGCGTATCCAGCAGATGgtaagtctatgcttggggcccctcgaatgctcctcagccctttagtccca Alignment from Spaln_nt2Genome GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAA-CTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG cagtgtagtgctgccatggcaaaacctgctcctactgttggtcactgcagGCACTCGGCATGCTTCTGTGGCATAAACATGATGTGGAGAAATCACTAGCTGACCTAGCCAATCTTCACTCCCTTCCCAGATGAGTGGACAGTAGAGGACAAGGTGCTGTTTGAGCAGGCCTTTGGGTTCCATGGCAAGTGTTTCCAGCGTATCCAGCAGATGgtaagtctatgcttggggcccctcgaatgctcctcagccctttagtccca Alignment from Pairagon GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAA-CTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG cagtgtagtgctgccatggcaaaacctgctcctactgttggtcactgcagGCACTCGGCATGCTTCTGTGGCATAAACATGATGTGGAGAAATCACTAGCTGACCTAGCCAATCTTCACTCCCTTCCCAGATGAGTGGACAGTAGAGGACAAGGTGCTGTTTGAGCAGGCCTTTGGGTTCCATGGCAAGTGTTTCCAGCGTATCCAGCAGATGgtaagtctatgcttggggcccctcgaatgctcctcagccctttagtccca Alignment from Exonerate_protein2genome GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAAC-TTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG cagtgtagtgctgccatggcaaaacctgctcctactgttggtcactgcagGCACTCGGCATGCTTCTGTGGCATAAACATGATGTGGAGAAATCACTAGCTGACCTAGCCAATCTTCACTCCCTTCCCAGATGAGTGGACAGTAGAGGACAAGGTGCTGTTTGAGCAGGCCTTTGGGTTCCATGGCAAGTGTTTCCAGCGTATCCAGCAGATGgtaagtctatgcttggggcccctcgaatgctcctcagccctttagtccca Alignment from Exonerate_coding2genome GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAAC-TTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG cagtgtagtgctgccatggcaaaacctgctcctactgttggtcactgcagGCACTCGGCATGCTTCTGTGGCATAAACATGATGTGGAGAAATCACTAGCTGACCTAGCCAATCTTCACTCCCTTCCCAGATGAGTGGACAGTAGAGGACAAGGTGCTGTTTGAGCAGGCCTTTGGGTTCCATGGCAAGTGTTTCCAGCGTATCCAGCAGATGgtaagtctatgcttggggcccctcgaatgctcctcagccctttagtccca Alignment from GeneWise GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCC-AACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAGGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG cagtgtagtgctgccatggcaaaacctgctcctactgttggtcactgcagGCACTCGGCATGCTTCTGTGGCATAAACATGATGTGGAGAAATCACTAGCTGACCTAGCCAATCTTCACTCCCTTCCCAGATGAGTGGACAGTAGAGGACAAGGTGCTGTTTGAGCAGGCCTTTGGGTTCCATGGCAAGTGTTTCCAGCGTATCCAGCAGATGgtaagtctatgcttggggcccctcgaatgctcctcagccctttagtccca #### Rcor2_ID2094_5 --> 0 - 2 Original Alignment CTCCCTGACAAGGTGATTCCCAGC-CTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACag ctgggggcagagtctcacgtggcctcctgtctcatgttttccacccacagCTCCCTGATAAGGTCATTCCCAGCCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCAAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACaggtgagcatcgcagttgctgaccttgggaaatgggtagggggctaacagta Alignment from CESAR CTCCCTGACAAGGTGATTCCCAGC-CTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACag ctgggggcagagtctcacgtggcctcctgtctcatgttttccacccacagCTCCCTGATAAGGTCATTCCCAGCCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCAAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACaggtgagcatcgcagttgctgaccttgggaaatgggtagggggctaacagta Alignment from Spaln_aa2Genome CTCCCTGACAAGGTGATTCCCAGC-CTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG ctgggggcagagtctcacgtggcctcctgtctcatgttttccacccacagCTCCCTGATAAGGTCATTCCCAGCcCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCAAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAGgtgagcatcgcagttgctgaccttgggaaatgggtagggggctaacagta Alignment from Spaln_nt2Genome CTCCCTGACAAGGTGATTCCCAG-CCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG ctgggggcagagtctcacgtggcctcctgtctcatgttttccacccacagCTCCCTGATAAGGTCATTCCCAGCCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCAAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAGgtgagcatcgcagttgctgaccttgggaaatgggtagggggctaacagta Alignment from Pairagon CTCCCTGACAAGGTGATTCCCAG-CCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG ctgggggcagagtctcacgtggcctcctgtctcatgttttccacccacagCTCCCTGATAAGGTCATTCCCAGCCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCAAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAGgtgagcatcgcagttgctgaccttgggaaatgggtagggggctaacagta Alignment from Exonerate_protein2genome CTCCCTGACAAGGTGATTCCCAGC-CTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG ctgggggcagagtctcacgtggcctcctgtctcatgttttccacccacagCTCCCTGATAAGGTCATTCCCAGCCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCAAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAGgtgagcatcgcagttgctgaccttgggaaatgggtagggggctaacagta Alignment from Exonerate_coding2genome CTCCCTGACAAGGTGATTCCCAGC-CTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG ctgggggcagagtctcacgtggcctcctgtctcatgttttccacccacagCTCCCTGATAAGGTCATTCCCAGCCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCAAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAGgtgagcatcgcagttgctgaccttgggaaatgggtagggggctaacagta Alignment from GeneWise CTCCCTGACAAGGTGATTCCC-AGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG ctgggggcagagtctcacgtggcctcctgtctcatgttttccacccacagCTCCCTGATAAGGTCATTCCCAGCCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCAAACTAGTGTGATGGACAGGCAGGCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAGgtgagcatcgcagttgctgaccttgggaaatgggtagggggctaacagta #### Rcor2_ID2095_6 --> 1 - 0 Original Alignment tGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGAC-CCCAAGCGAGAG tattctgagttgggccttccctcattttagtagcaccctgtttgttctagtGATGAACTAGAAGAGGGACGGGGAGCTGTGAGCGAGGGGGAGCCGGATACTGGAGACCCCCAAGCGAGAGgtgagttccgctagctcctctgtcctgcccacccctcagcttgtcctcag Alignment from CESAR tGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCC-AAGCGAGAG tattctgagttgggccttccctcattttagtagcaccctgtttgttctagtGATGAACTAGAAGAGGGACGGGGAGCTGTGAGCGAGGGGGAGCCGGATACTGGAGACCCCCAAGCGAGAGgtgagttccgctagctcctctgtcctgcccacccctcagcttgtcctcag Alignment from Spaln_aa2Genome TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAG tattctgagttgggccttccctcattttagtagcaccctgtttgttctagTGATGAACTAGAAGAGGGACGGGGAGCTGTGAGCGAGGGGGAGCCGGATACTGGAGACCCCCAAgcgagaggtgagttccgctagctcctctgtcctgcccacccctcagcttgtcctcag Alignment from Spaln_nt2Genome TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCC-AAGCGAGAG tattctgagttgggccttccctcattttagtagcaccctgtttgttctagTGATGAACTAGAAGAGGGACGGGGAGCTGTGAGCGAGGGGGAGCCGGATACTGGAGACCCCCAAGCGAGAGgtgagttccgctagctcctctgtcctgcccacccctcagcttgtcctcag Alignment from Pairagon TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGA-CCCCAAGCGAGAG tattctgagttgggccttccctcattttagtagcaccctgtttgttctagTGATGAACTAGAAGAGGGACGGGGAGCTGTGAGCGAGGGGGAGCCGGATACTGGAGACCCCCAAGCGAGAGgtgagttccgctagctcctctgtcctgcccacccctcagcttgtcctcag Alignment from Exonerate_protein2genome TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGAC-CCCAAGCGAGAG tattctgagttgggccttccctcattttagtagcaccctgtttgttctagTGATGAACTAGAAGAGGGACGGGGAGCTGTGAGCGAGGGGGAGCCGGATACTGGAGACCCCCAAGCGAGAGgtgagttccgctagctcctctgtcctgcccacccctcagcttgtcctcag Alignment from Exonerate_coding2genome TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGAC-CCCAAGCGAGAG tattctgagttgggccttccctcattttagtagcaccctgtttgttctagTGATGAACTAGAAGAGGGACGGGGAGCTGTGAGCGAGGGGGAGCCGGATACTGGAGACCCCCAAGCGAGAGgtgagttccgctagctcctctgtcctgcccacccctcagcttgtcctcag Alignment from GeneWise TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCC-AAGCGAGAG tattctgagttgggccttccctcattttagtagcaccctgtttgttctagTGATGAACTAGAAGAGGGACGGGGAGCTGTGAGCGAGGGGGAGCCGGATACTGGAGACCCCCAAGCGAGAGgtgagttccgctagctcctctgtcctgcccacccctcagcttgtcctcag #### Rcor2_ID2099_10 --> 2 - 0 Original Alignment ctATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGC-CGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG cagctcagaggtatatttacagtctgataactttccgattttttttccagctATTCGTAGATATGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtatttggcagggataagttccagggaggaggtgagtctctatggaacag Alignment from CESAR ctATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGC-CGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG cagctcagaggtatatttacagtctgataactttccgattttttttccagctATTCGTAGATATGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtatttggcagggataagttccagggaggaggtgagtctctatggaacag Alignment from Spaln_aa2Genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGC-CGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG cagctcagaggtatatttacagtctgataactttccgattttttttccagCTATTCGTAGATATGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCcCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtatttggcagggataagttccagggaggaggtgagtctctatggaacag Alignment from Spaln_nt2Genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCG-CCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG cagctcagaggtatatttacagtctgataactttccgattttttttccagCTATTCGTAGATATGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtatttggcagggataagttccagggaggaggtgagtctctatggaacag Alignment from Pairagon CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCG-CCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG cagctcagaggtatatttacagtctgataactttccgattttttttccagCTATTCGTAGATATGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtatttggcagggataagttccagggaggaggtgagtctctatggaacag Alignment from Exonerate_protein2genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGC-CGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG cagctcagaggtatatttacagtctgataactttccgattttttttccagCTATTCGTAGATATGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtatttggcagggataagttccagggaggaggtgagtctctatggaacag Alignment from Exonerate_coding2genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGC-CGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG cagctcagaggtatatttacagtctgataactttccgattttttttccagCTATTCGTAGATATGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtatttggcagggataagttccagggaggaggtgagtctctatggaacag Alignment from GeneWise CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGC-CGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG cagctcagaggtatatttacagtctgataactttccgattttttttccagCTATTCGTAGATATGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtatttggcagggataagttccagggaggaggtgagtctctatggaacag #### Rela_ID1126_3 --> 2 - 0 Original Alignment agCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCA-GCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG gatttggggctgcaagaagagcacctgaacactatgaatttatctttcagagCCAGCCCAGGCTTCTGGGCCTTACGTGGAGATCATCGAACAGCCAAAGCAACGGGGCATGCGATTCCGCTATAAATCCGAGGGGCGCTCACGCAGGCAGTATTCCTGGTGAGAGAAGCACAGATACCACAAAGACACACCCCACCATCAAGgtgaagaagggcccccaggggtgttgtgtggtggaatgcactgtgcagct Alignment from CESAR agCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCA-GCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG gatttggggctgcaagaagagcacctgaacactatgaatttatctttcagagCCAGCCCAGGCTTCTGGGCCTTACGTGGAGATCATCGAACAGCCAAAGCAACGGGGCATGCGATTCCGCTATAAATCCGAGGGGCGCTCACGCAGGCAGTATTCCTGGTGAGAGAAGCACAGATACCACAAAGACACACCCCACCATCAAGgtgaagaagggcccccaggggtgttgtgtggtggaatgcactgtgcagct Alignment from Spaln_aa2Genome AGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCA-GCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG gatttggggctgcaagaagagcacctgaacactatgaatttatctttcagAGCCAGCCCAGGCTTCTGGGCCTTACGTGGAGATCATCGAACAGCCAAAGCAACGGGGCATGCGATTCCGCTATAAATCCGAGGGGCGCTCAcGCAGGCAGTATTCCTGGTGAGAGAAGCACAGATACCACAAAGACACACCCCACCATCAAGgtgaagaagggcccccaggggtgttgtgtggtggaatgcactgtgcagct Alignment from Spaln_nt2Genome AGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCA-GCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG gatttggggctgcaagaagagcacctgaacactatgaatttatctttcagAGCCAGCCCAGGCTTCTGGGCCTTACGTGGAGATCATCGAACAGCCAAAGCAACGGGGCATGCGATTCCGCTATAAATCCGAGGGGCGCTCACGCAGGCAGTATTCCTGGTGAGAGAAGCACAGATACCACAAAGACACACCCCACCATCAAGgtgaagaagggcccccaggggtgttgtgtggtggaatgcactgtgcagct Alignment from Pairagon AGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCA-GCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG gatttggggctgcaagaagagcacctgaacactatgaatttatctttcagAGCCAGCCCAGGCTTCTGGGCCTTACGTGGAGATCATCGAACAGCCAAAGCAACGGGGCATGCGATTCCGCTATAAATCCGAGGGGCGCTCACGCAGGCAGTATTCCTGGTGAGAGAAGCACAGATACCACAAAGACACACCCCACCATCAAGgtgaagaagggcccccaggggtgttgtgtggtggaatgcactgtgcagct Alignment from Exonerate_protein2genome AGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCA-GCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG gatttggggctgcaagaagagcacctgaacactatgaatttatctttcagAGCCAGCCCAGGCTTCTGGGCCTTACGTGGAGATCATCGAACAGCCAAAGCAACGGGGCATGCGATTCCGCTATAAATCCGAGGGGCGCTCACGCAGGCAGTATTCCTGGTGAGAGAAGCACAGATACCACAAAGACACACCCCACCATCAAGgtgaagaagggcccccaggggtgttgtgtggtggaatgcactgtgcagct Alignment from Exonerate_coding2genome ATCTTTCCCTCAGAGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCA-GCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG gatttggggctgcaagaagagcacctgaacactatgaATTTATCTTTCAGAGCCAGCCCAGGCTTCTGGGCCTTACGTGGAGATCATCGAACAGCCAAAGCAACGGGGCATGCGATTCCGCTATAAATCCGAGGGGCGCTCACGCAGGCAGTATTCCTGGTGAGAGAAGCACAGATACCACAAAGACACACCCCACCATCAAGgtgaagaagggcccccaggggtgttgtgtggtggaatgcactgtgcagct Alignment from GeneWise GACGATCTGTTTCCCCTCATCTTTCCCTCAGAGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGC-TCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG gagcacctgaacactatga------------------ATTTATCTTTCAGAGCCAGCCCAGGCTTCTGGGCCTTACGTGGAGATCATCGAACAGCCAAAGCAACGGGGCATGCGATTCCGCTATAAATCCGAGGGGCGCTCACGCAGGCAGTATTCCTGGTGAGAGAAGCACAGATACCACAAAGACACACCCCACCATCAAGgtgaagaagggcccccaggggtgttgtgtggtggaatgcactgtgcagct #### Rela_ID1127_4 --> 0 - 2 Original Alignment ATCAATGGCTACACAGGA-CCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATag gagccagattagggaatgctggccactatctcccgatctcccccgcgcagATCAATGGTTACACAGGACCCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATaggtaggctacctatgggctgggggtggtgtcaggggggtgtaggagtatac Alignment from CESAR ATCAATGGCTACACAGGA-CCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATag gagccagattagggaatgctggccactatctcccgatctcccccgcgcagATCAATGGTTACACAGGACCCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATaggtaggctacctatgggctgggggtggtgtcaggggggtgtaggagtatac Alignment from Spaln_aa2Genome ATCAATGGCTACACAGGA-CCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG gagccagattagggaatgctggccactatctcccgatctcccccgcgcagATCAATGGTTACACAGGAcCCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAGgtaggctacctatgggctgggggtggtgtcaggggggtgtaggagtatac Alignment from Spaln_nt2Genome ATCAATGGCTACACAGGA-CCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG gagccagattagggaatgctggccactatctcccgatctcccccgcgcagATCAATGGTTACACAGGACCCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAGgtaggctacctatgggctgggggtggtgtcaggggggtgtaggagtatac Alignment from Pairagon ATCAATGGCTACACAGGA-CCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG gagccagattagggaatgctggccactatctcccgatctcccccgcgcagATCAATGGTTACACAGGACCCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAGgtaggctacctatgggctgggggtggtgtcaggggggtgtaggagtatac Alignment from Exonerate_protein2genome ATCAATGGCTACACAGGA-CCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG gagccagattagggaatgctggccactatctcccgatctcccccgcgcagATCAATGGTTACACAGGACCCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAGgtaggctacctatgggctgggggtggtgtcaggggggtgtaggagtatac Alignment from Exonerate_coding2genome ATCAATGGCTACACAGGA-CCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG gagccagattagggaatgctggccactatctcccgatctcccccgcgcagATCAATGGTTACACAGGACCCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAGgtaggctacctatgggctgggggtggtgtcaggggggtgtaggagtatac Alignment from GeneWise ATCAATGGCTACACAGGACCA-GGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG gagccagattagggaatgctggccactatctcccgatctcccccgcgcagATCAATGGTTACACAGGACCCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAGgtaggctacctatgggctgggggtggtgtcaggggggtgtaggagtatac #### Rin1_ID807_2 --> 1 - 0 Original Alignment gCCATCTACAGACCCACTGTATGAC-ACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggatgggaagacgtgttcaccccgagccacttccacctctccaaggCCATCTACAGACCCACTGTATGACCACACCTGATACGAGAGGGGTACAGGCTGGTGGGTCACAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTCCGGGCCAATGCGGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCAGGGgtaaggctctccatttcctcaaggcctagcccgccaaggatgggagggaa Alignment from CESAR gCCATCTACAGACCCACTGTATGAC-ACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggatgggaagacgtgttcaccccgagccacttccacctctccaaggCCATCTACAGACCCACTGTATGACCACACCTGATACGAGAGGGGTACAGGCTGGTGGGTCACAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTCCGGGCCAATGCGGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCAGGGgtaaggctctccatttcctcaaggcctagcccgccaaggatgggagggaa Alignment from Spaln_aa2Genome GCCATCTACAGACCCACTGTATGAC-ACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggatgggaagacgtgttcaccccgagccacttccacctctccaagGCCATCTACAGACCCACTGTATGACcACACCTGATACGAGAGGGGTACAGGCTGGTGGGTCACAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTCCGGGCCAATGCGGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCAGGGgtaaggctctccatttcctcaaggcctagcccgccaaggatgggagggaa Alignment from Spaln_nt2Genome GCCATCTACAGACCCACTGTATGA-CACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggatgggaagacgtgttcaccccgagccacttccacctctccaagGCCATCTACAGACCCACTGTATGACCACACCTGATACGAGAGGGGTACAGGCTGGTGGGTCACAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTCCGGGCCAATGCGGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCAGGGgtaaggctctccatttcctcaaggcctagcccgccaaggatgggagggaa Alignment from Pairagon GCCATCTACAGACCCACTGTATGA-CACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggatgggaagacgtgttcaccccgagccacttccacctctccaagGCCATCTACAGACCCACTGTATGACCACACCTGATACGAGAGGGGTACAGGCTGGTGGGTCACAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTCCGGGCCAATGCGGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCAGGGgtaaggctctccatttcctcaaggcctagcccgccaaggatgggagggaa Alignment from Exonerate_protein2genome GCCATCTACAGACCCACTGTATGAC-ACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggatgggaagacgtgttcaccccgagccacttccacctctccaagGCCATCTACAGACCCACTGTATGACCACACCTGATACGAGAGGGGTACAGGCTGGTGGGTCACAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTCCGGGCCAATGCGGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCAGGGgtaaggctctccatttcctcaaggcctagcccgccaaggatgggagggaa Alignment from Exonerate_coding2genome GCCATCTACAGACCCACTGTATGAC-ACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggatgggaagacgtgttcaccccgagccacttccacctctccaagGCCATCTACAGACCCACTGTATGACCACACCTGATACGAGAGGGGTACAGGCTGGTGGGTCACAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTCCGGGCCAATGCGGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCAGGGgtaaggctctccatttcctcaaggcctagcccgccaaggatgggagggaa Alignment from GeneWise GCCATCTACAGACCCACTGTATGAC-ACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggatgggaagacgtgttcaccccgagccacttccacctctccaagGCCATCTACAGACCCACTGTATGACCACACCTGATACGAGAGGGGTACAGGCTGGTGGGTCACAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTCCGGGCCAATGCGGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCAGGGgtaaggctctccatttcctcaaggcctagcccgccaaggatgggagggaa #### Rps6kb2_ID370_12 --> 0 - 0 Original Alignment AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGC-GTGGACCCTCCCTTCAGGCCAAGTCTG gataggcagggagagtgattgacatagtctaacagttggtgtctgcttagAGGCACCCCTTCTTCCGACACATCAATTGGGACGACCTCTTGGCCTGCCGTCGTGGACCCTCCCTTCAGGCCAAGTCTGgtatgtatatgggggtcatcttgaccacatggcatgcagaggtcctgtcc Alignment from CESAR AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGC-GTGGACCCTCCCTTCAGGCCAAGTCTG gataggcagggagagtgattgacatagtctaacagttggtgtctgcttagAGGCACCCCTTCTTCCGACACATCAATTGGGACGACCTCTTGGCCTGCCGTCGTGGACCCTCCCTTCAGGCCAAGTCTGgtatgtatatgggggtcatcttgaccacatggcatgcagaggtcctgtcc Alignment from Spaln_aa2Genome AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGC-GTGGACCCTCCCTTCAGGCCAAGTCTG gataggcagggagagtgattgacatagtctaacagttggtgtctgcttagAGGCACCCCTTCTTCCGACACATCAATTGGGACGACCTCTTGGCCTGCCGTcGTGGACCCTCCCTTCAGGCCAAGTCTGgtatgtatatgggggtcatcttgaccacatggcatgcagaggtcctgtcc Alignment from Spaln_nt2Genome AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCG-CGTGGACCCTCCCTTCAGGCCAAGTCTG gataggcagggagagtgattgacatagtctaacagttggtgtctgcttagAGGCACCCCTTCTTCCGACACATCAATTGGGACGACCTCTTGGCCTGCCGTCGTGGACCCTCCCTTCAGGCCAAGTCTGgtatgtatatgggggtcatcttgaccacatggcatgcagaggtcctgtcc Alignment from Pairagon AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCG-CGTGGACCCTCCCTTCAGGCCAAGTCTG gataggcagggagagtgattgacatagtctaacagttggtgtctgcttagAGGCACCCCTTCTTCCGACACATCAATTGGGACGACCTCTTGGCCTGCCGTCGTGGACCCTCCCTTCAGGCCAAGTCTGgtatgtatatgggggtcatcttgaccacatggcatgcagaggtcctgtcc Alignment from Exonerate_protein2genome AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGC-GTGGACCCTCCCTTCAGGCCAAGTCTG gataggcagggagagtgattgacatagtctaacagttggtgtctgcttagAGGCACCCCTTCTTCCGACACATCAATTGGGACGACCTCTTGGCCTGCCGTCGTGGACCCTCCCTTCAGGCCAAGTCTGgtatgtatatgggggtcatcttgaccacatggcatgcagaggtcctgtcc Alignment from Exonerate_coding2genome AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGC-GTGGACCCTCCCTTCAGGCCAAGTCTG gataggcagggagagtgattgacatagtctaacagttggtgtctgcttagAGGCACCCCTTCTTCCGACACATCAATTGGGACGACCTCTTGGCCTGCCGTCGTGGACCCTCCCTTCAGGCCAAGTCTGgtatgtatatgggggtcatcttgaccacatggcatgcagaggtcctgtcc Alignment from GeneWise AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGC-GTGGACCCTCCCTTCAGGCCAAGTCTG gataggcagggagagtgattgacatagtctaacagttggtgtctgcttagAGGCACCCCTTCTTCCGACACATCAATTGGGACGACCTCTTGGCCTGCCGTCGTGGACCCTCCCTTCAGGCCAAGTCTGgtatgtatatgggggtcatcttgaccacatggcatgcagaggtcctgtcc #### Rps6kb2_ID374_8 --> 2 - 2 Original Alignment gcCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTCACACCTTC-TGTGGCACCATTGAGTACat ggcctggccacacgtcatcccagggcttcgggttccttttcttttttaaggcCACATCAAACTGACATACTTTGGACTTTGCAAGGAGTCTATTCATGAGGGTGCTATCACTCACACCTTCCTGTGGCACCATTGAGTACatgtgtgtaacacctgactagccagggtctggaaggattaccagagagggcc Alignment from CESAR gcCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTCACACCTTC-TGTGGCACCATTGAGTACat ggcctggccacacgtcatcccagggcttcgggttccttttcttttttaaggcCACATCAAACTGACATACTTTGGACTTTGCAAGGAGTCTATTCATGAGGGTGCTATCACTCACACCTTCCTGTGGCACCATTGAGTACatgtgtgtaacacctgactagccagggtctggaaggattaccagagagggcc Alignment from Spaln_aa2Genome GCCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTCACACCTTC-TGTGGCACCATTGAGTACAT ggcctggccacacgtcatcccagggcttcgggttccttttcttttttaagGCCACATCAAACTGACATACTTTGGACTTTGCAAGGAGTCTATTCATGAGGGTGCTATCACTCACACCTTCcTGTGGCACCATTGAGTACATgtgtgtaacacctgactagccagggtctggaaggattaccagagagggcc Alignment from Spaln_nt2Genome GCCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTCACACCTT-CTGTGGCACCATTGAGTACAT ggcctggccacacgtcatcccagggcttcgggttccttttcttttttaagGCCACATCAAACTGACATACTTTGGACTTTGCAAGGAGTCTATTCATGAGGGTGCTATCACTCACACCTTCCTGTGGCACCATTGAGTACATgtgtgtaacacctgactagccagggtctggaaggattaccagagagggcc Alignment from Pairagon GCCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTCACACCTT-CTGTGGCACCATTGAGTACAT ggcctggccacacgtcatcccagggcttcgggttccttttcttttttaagGCCACATCAAACTGACATACTTTGGACTTTGCAAGGAGTCTATTCATGAGGGTGCTATCACTCACACCTTCCTGTGGCACCATTGAGTACATgtgtgtaacacctgactagccagggtctggaaggattaccagagagggcc Alignment from Exonerate_protein2genome GCCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTCACACCTTC-TGTGGCACCATTGAGTACAT ggcctggccacacgtcatcccagggcttcgggttccttttcttttttaagGCCACATCAAACTGACATACTTTGGACTTTGCAAGGAGTCTATTCATGAGGGTGCTATCACTCACACCTTCCTGTGGCACCATTGAGTACATgtgtgtaacacctgactagccagggtctggaaggattaccagagagggcc Alignment from Exonerate_coding2genome GCCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTCACACCTTC-TGTGGCACCATTGAGTACAT ggcctggccacacgtcatcccagggcttcgggttccttttcttttttaagGCCACATCAAACTGACATACTTTGGACTTTGCAAGGAGTCTATTCATGAGGGTGCTATCACTCACACCTTCCTGTGGCACCATTGAGTACATgtgtgtaacacctgactagccagggtctggaaggattaccagagagggcc Alignment from GeneWise GCCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTCACACC-TTCTGTGGCACCATTGAGTACAT ggcctggccacacgtcatcccagggcttcgggttccttttcttttttaagGCCACATCAAACTGACATACTTTGGACTTTGCAAGGAGTCTATTCATGAGGGTGCTATCACTCACACCTTCCTGTGGCACCATTGAGTACATgtgtgtaacacctgactagccagggtctggaaggattaccagagagggcc #### Rps6kb2_ID375_7 --> 1 - 1 Original Alignment cTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGC-ATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGg tgcctacaccccaacctttgccctgcctgcgtttctctccccttatgcagcTTCTACCTGGCGGAGATCACACTAGCCCTGGGCCATCTCCATTTCCATGGCCATCATCTACCGGGACCTCAAGCCTGAAAACATCATGCTCAGCAGCCAGggtgagtatactgtgtgcatgtatgggtgttacacccctggccttgccagt Alignment from CESAR cTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGC-ATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGg tgcctacaccccaacctttgccctgcctgcgtttctctccccttatgcagcTTCTACCTGGCGGAGATCACACTAGCCCTGGGCCATCTCCATTTCCATGGCCATCATCTACCGGGACCTCAAGCCTGAAAACATCATGCTCAGCAGCCAGggtgagtatactgtgtgcatgtatgggtgttacacccctggccttgccagt Alignment from Spaln_aa2Genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGC-ATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG tgcctacaccccaacctttgccctgcctgcgtttctctccccttatgcagCTTCTACCTGGCGGAGATCACACTAGCCCTGGGCCATCTCCATTTCCATGGCcATCATCTACCGGGACCTCAAGCCTGAAAACATCATGCTCAGCAGCCAGGgtgagtatactgtgtgcatgtatgggtgttacacccctggccttgccagt Alignment from Spaln_nt2Genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGC-ATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG tgcctacaccccaacctttgccctgcctgcgtttctctccccttatgcagCTTCTACCTGGCGGAGATCACACTAGCCCTGGGCCATCTCCATTTCCATGGCCATCATCTACCGGGACCTCAAGCCTGAAAACATCATGCTCAGCAGCCAGGgtgagtatactgtgtgcatgtatgggtgttacacccctggccttgccagt Alignment from Pairagon CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGG-CATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG tgcctacaccccaacctttgccctgcctgcgtttctctccccttatgcagCTTCTACCTGGCGGAGATCACACTAGCCCTGGGCCATCTCCATTTCCATGGCCATCATCTACCGGGACCTCAAGCCTGAAAACATCATGCTCAGCAGCCAGGgtgagtatactgtgtgcatgtatgggtgttacacccctggccttgccagt Alignment from Exonerate_protein2genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGC-ATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG tgcctacaccccaacctttgccctgcctgcgtttctctccccttatgcagCTTCTACCTGGCGGAGATCACACTAGCCCTGGGCCATCTCCATTTCCATGGCCATCATCTACCGGGACCTCAAGCCTGAAAACATCATGCTCAGCAGCCAGGgtgagtatactgtgtgcatgtatgggtgttacacccctggccttgccagt Alignment from Exonerate_coding2genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGC-ATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG tgcctacaccccaacctttgccctgcctgcgtttctctccccttatgcagCTTCTACCTGGCGGAGATCACACTAGCCCTGGGCCATCTCCATTTCCATGGCCATCATCTACCGGGACCTCAAGCCTGAAAACATCATGCTCAGCAGCCAGGgtgagtatactgtgtgcatgtatgggtgttacacccctggccttgccagt Alignment from GeneWise CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGC-ATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG tgcctacaccccaacctttgccctgcctgcgtttctctccccttatgcagCTTCTACCTGGCGGAGATCACACTAGCCCTGGGCCATCTCCATTTCCATGGCCATCATCTACCGGGACCTCAAGCCTGAAAACATCATGCTCAGCAGCCAGGgtgagtatactgtgtgcatgtatgggtgttacacccctggccttgccagt #### Rps6kb2_ID379_3 --> 1 - 0 Original Alignment gACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGG-GGCTATGGCAAG gcctgggagtacactagaacttttccctggacctccgtctcttgtcacaggACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTCGGTCCTGAACGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGCGGCTATGGCAAGgtgagtacatcctgctctccctggcaacctcagctctagcctgagaagca Alignment from CESAR gACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGG-GGCTATGGCAAG gcctgggagtacactagaacttttccctggacctccgtctcttgtcacaggACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTCGGTCCTGAACGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGCGGCTATGGCAAGgtgagtacatcctgctctccctggcaacctcagctctagcctgagaagca Alignment from Spaln_aa2Genome GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGG-GGCTATGGCAAG gcctgggagtacactagaacttttccctggacctccgtctcttgtcacagGACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTCGGTCCTGAACGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGcGGCTATGGCAAGgtgagtacatcctgctctccctggcaacctcagctctagcctgagaagca Alignment from Spaln_nt2Genome GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGG-GGCTATGGCAAG gcctgggagtacactagaacttttccctggacctccgtctcttgtcacagGACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTCGGTCCTGAACGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGCGGCTATGGCAAGgtgagtacatcctgctctccctggcaacctcagctctagcctgagaagca Alignment from Pairagon GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGG-GGCTATGGCAAG gcctgggagtacactagaacttttccctggacctccgtctcttgtcacagGACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTCGGTCCTGAACGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGCGGCTATGGCAAGgtgagtacatcctgctctccctggcaacctcagctctagcctgagaagca Alignment from Exonerate_protein2genome GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAG-GGGGGCTATGGCAAG gcctgggagtacactagaacttttccctggacctccgtctcttgtcacagGACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTCGGTCCTGAACGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGCGGCTATGGCAAGgtgagtacatcctgctctccctggcaacctcagctctagcctgagaagca Alignment from Exonerate_coding2genome GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAG-GGGGGCTATGGCAAG gcctgggagtacactagaacttttccctggacctccgtctcttgtcacagGACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTCGGTCCTGAACGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGCGGCTATGGCAAGgtgagtacatcctgctctccctggcaacctcagctctagcctgagaagca Alignment from GeneWise GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGC-AAGGGGGGCTATGGCAAG gcctgggagtacactagaacttttccctggacctccgtctcttgtcacagGACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTCGGTCCTGAACGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGCGGCTATGGCAAGgtgagtacatcctgctctccctggcaacctcagctctagcctgagaagca #### Rrp12_ID8301_22 --> 0 - 0 Original Alignment CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCG-GCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gcttagtgcaaggtgacaggagggccccgagttcatatctcctttttcagCCCCGTTTGAAGTGCCTCATACATATTGTGAAGACACTGTTGCGCTGAGCATGAGGAGTTCATAGCTGCTCTGATCCCAGAGgtgagtggatgtggagggctgtgggttgtggtttcttagtgtagattcca Alignment from CESAR CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCG-GCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gcttagtgcaaggtgacaggagggccccgagttcatatctcctttttcagCCCCGTTTGAAGTGCCTCATACATATTGTGAAGACACTGTTGCGCTGAGCATGAGGAGTTCATAGCTGCTCTGATCCCAGAGgtgagtggatgtggagggctgtgggttgtggtttcttagtgtagattcca Alignment from Spaln_aa2Genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTG-TCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gcttagtgcaaggtgacaggagggccccgagttcatatctcctttttcagCCCCGTTTGAAGTGCCTCATACATATTGTGAAGACACTGtTGCGCTGAGCATGAGGAGTTCATAGCTGCTCTGATCCCAGAGgtgagtggatgtggagggctgtgggttgtggtttcttagtgtagattcca Alignment from Spaln_nt2Genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCG-GCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gcttagtgcaaggtgacaggagggccccgagttcatatctcctttttcagCCCCGTTTGAAGTGCCTCATACATATTGTGAAGACACTGTTGCGCTGAGCATGAGGAGTTCATAGCTGCTCTGATCCCAGAGgtgagtggatgtggagggctgtgggttgtggtttcttagtgtagattcca Alignment from Pairagon CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCG-GCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gcttagtgcaaggtgacaggagggccccgagttcatatctcctttttcagCCCCGTTTGAAGTGCCTCATACATATTGTGAAGACACTGTTGCGCTGAGCATGAGGAGTTCATAGCTGCTCTGATCCCAGAGgtgagtggatgtggagggctgtgggttgtggtttcttagtgtagattcca Alignment from Exonerate_protein2genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTG-TCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gcttagtgcaaggtgacaggagggccccgagttcatatctcctttttcagCCCCGTTTGAAGTGCCTCATACATATTGTGAAGACACTGTTGCGCTGAGCATGAGGAGTTCATAGCTGCTCTGATCCCAGAGgtgagtggatgtggagggctgtgggttgtggtttcttagtgtagattcca Alignment from Exonerate_coding2genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTG-TCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gcttagtgcaaggtgacaggagggccccgagttcatatctcctttttcagCCCCGTTTGAAGTGCCTCATACATATTGTGAAGACACTGTTGCGCTGAGCATGAGGAGTTCATAGCTGCTCTGATCCCAGAGgtgagtggatgtggagggctgtgggttgtggtttcttagtgtagattcca Alignment from GeneWise CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTG-TCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gcttagtgcaaggtgacaggagggccccgagttcatatctcctttttcagCCCCGTTTGAAGTGCCTCATACATATTGTGAAGACACTGTTGCGCTGAGCATGAGGAGTTCATAGCTGCTCTGATCCCAGAGgtgagtggatgtggagggctgtgggttgtggtttcttagtgtagattcca #### Sart1_ID956_19 --> 0 - 2 Original Alignment CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAG-AAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATgc gtaatatgttgggcctgctacccctggtcactctttcatgtttctgcaagCTCCTTAAGAAAATGAGCTCCAGTGATACACCCCTGGGCACTGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGCAAGACACCATATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATgcgtgggtatgggtaggagctggaagggtggggtagcaagccggaaggatgg Alignment from CESAR CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAG-AAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATgc gtaatatgttgggcctgctacccctggtcactctttcatgtttctgcaagCTCCTTAAGAAAATGAGCTCCAGTGATACACCCCTGGGCACTGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGCAAGACACCATATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATgcgtgggtatgggtaggagctggaagggtggggtagcaagccggaaggatgg Alignment from Spaln_aa2Genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAG-AAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC gtaatatgttgggcctgctacccctggtcactctttcatgtttctgcaagCTCCTTAAGAAAATGAGCTCCAGTGATACACCCCTGGGCACTGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGcAAGACACCATATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCgtgggtatgggtaggagctggaagggtggggtagcaagccggaaggatgg Alignment from Spaln_nt2Genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAG-AAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC gtaatatgttgggcctgctacccctggtcactctttcatgtttctgcaagCTCCTTAAGAAAATGAGCTCCAGTGATACACCCCTGGGCACTGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGCAAGACACCATATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCgtgggtatgggtaggagctggaagggtggggtagcaagccggaaggatgg Alignment from Pairagon CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAG-AAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC gtaatatgttgggcctgctacccctggtcactctttcatgtttctgcaagCTCCTTAAGAAAATGAGCTCCAGTGATACACCCCTGGGCACTGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGCAAGACACCATATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCgtgggtatgggtaggagctggaagggtggggtagcaagccggaaggatgg Alignment from Exonerate_protein2genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAG-AAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCG gtaatatgttgggcctgctacccctggtcactctttcatgtttctgcaagCTCCTTAAGAAAATGAGCTCCAGTGATACACCCCTGGGCACTGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGCAAGACACCATATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCGtgggtatgggtaggagctggaagggtggggtagcaagccggaaggatgg Alignment from Exonerate_coding2genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAG-AAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCG gtaatatgttgggcctgctacccctggtcactctttcatgtttctgcaagCTCCTTAAGAAAATGAGCTCCAGTGATACACCCCTGGGCACTGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGCAAGACACCATATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCGtgggtatgggtaggagctggaagggtggggtagcaagccggaaggatgg Alignment from GeneWise CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAG-AAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCGAACACCATCACCAAA gtaatatgttgggcctgctacccctggtcactctttcatgtttctgcaagCTCCTTAAGAAAATGAGCTCCAGTGATACACCCCTGGGCACTGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGCAAGACACCATATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCGTGGGTATGGGTAGGAgctggaagggtggggtagcaagccggaaggatgg #### Sart1_ID957_18 --> 0 - 0 Original Alignment GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAG-CGGCGGATGAAGAAGCTGGATGAGGAGGCG tcccggctgcctggcctttctgctgccttttgccctttccttgcctgcagGCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCCGGCGGATGAAGAAGCTGGATGAGGAGGCAgtgagtcttgggagggaggtgggggctctgcatttttgggtgatgtgtaa Alignment from CESAR GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAG-CGGCGGATGAAGAAGCTGGATGAGGAGGCG tcccggctgcctggcctttctgctgccttttgccctttccttgcctgcagGCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCCGGCGGATGAAGAAGCTGGATGAGGAGGCAgtgagtcttgggagggaggtgggggctctgcatttttgggtgatgtgtaa Alignment from Spaln_aa2Genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAG-CGGCGGATGAAGAAGCTGGATGAGGAGGCG tcccggctgcctggcctttctgctgccttttgccctttccttgcctgcagGCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGcCGGCGGATGAAGAAGCTGGATGAGGAGGCAgtgagtcttgggagggaggtgggggctctgcatttttgggtgatgtgtaa Alignment from Spaln_nt2Genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAG-CGGCGGATGAAGAAGCTGGATGAGGAGGCG tcccggctgcctggcctttctgctgccttttgccctttccttgcctgcagGCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCCGGCGGATGAAGAAGCTGGATGAGGAGGCAgtgagtcttgggagggaggtgggggctctgcatttttgggtgatgtgtaa Alignment from Pairagon GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAG-CGGCGGATGAAGAAGCTGGATGAGGAGGCG tcccggctgcctggcctttctgctgccttttgccctttccttgcctgcagGCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCCGGCGGATGAAGAAGCTGGATGAGGAGGCAgtgagtcttgggagggaggtgggggctctgcatttttgggtgatgtgtaa Alignment from Exonerate_protein2genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAG-CGGCGGATGAAGAAGCTGGATGAGGAGGCG tcccggctgcctggcctttctgctgccttttgccctttccttgcctgcagGCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCCGGCGGATGAAGAAGCTGGATGAGGAGGCAgtgagtcttgggagggaggtgggggctctgcatttttgggtgatgtgtaa Alignment from Exonerate_coding2genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAG-CGGCGGATGAAGAAGCTGGATGAGGAGGCG tcccggctgcctggcctttctgctgccttttgccctttccttgcctgcagGCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCCGGCGGATGAAGAAGCTGGATGAGGAGGCAgtgagtcttgggagggaggtgggggctctgcatttttgggtgatgtgtaa Alignment from GeneWise GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACT-GAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG tcccggctgcctggcctttctgctgccttttgccctttccttgcctgcagGCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCCGGCGGATGAAGAAGCTGGATGAGGAGGCAgtgagtcttgggagggaggtgggggctctgcatttttgggtgatgtgtaa #### Sart1_ID962_13 --> 0 - 0 Original Alignment GTGCTGGAGATTGTGAAGAAACTG-GAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG cgtatgaccccataaactcggggtctgcagctgcttctctttcctgttagGTGCTGGAGATTGTGAAGAAACTGCGAGTCCCGTCAGCGTGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCCTAGTGTTCAATGCCACTTCTGAATTCTGCCGCACACTGGGGGAGATCCCCACCTATGGGTTGGCTGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaacgcaactgtttcctggcttttgtccttaggctgctgatttctgctt Alignment from CESAR GTGCTGGAGATTGTGAAGAAACTG-GAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG cgtatgaccccataaactcggggtctgcagctgcttctctttcctgttagGTGCTGGAGATTGTGAAGAAACTGCGAGTCCCGTCAGCGTGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCCTAGTGTTCAATGCCACTTCTGAATTCTGCCGCACACTGGGGGAGATCCCCACCTATGGGTTGGCTGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaacgcaactgtttcctggcttttgtccttaggctgctgatttctgctt Alignment from Spaln_aa2Genome GTGCTGGAGATTGTGAAGAAACTG-GAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG cgtatgaccccataaactcggggtctgcagctgcttctctttcctgttagGTGCTGGAGATTGTGAAGAAACTGcGAGTCCCGTCAGCGTGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCCTAGTGTTCAATGCCACTTCTGAATTCTGCCGCACACTGGGGGAGATCCCCACCTATGGGTTGGCTGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaacgcaactgtttcctggcttttgtccttaggctgctgatttctgctt Alignment from Spaln_nt2Genome GTGCTGGAGATTGTGAAGAAACTG-GAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG cgtatgaccccataaactcggggtctgcagctgcttctctttcctgttagGTGCTGGAGATTGTGAAGAAACTGCGAGTCCCGTCAGCGTGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCCTAGTGTTCAATGCCACTTCTGAATTCTGCCGCACACTGGGGGAGATCCCCACCTATGGGTTGGCTGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaacgcaactgtttcctggcttttgtccttaggctgctgatttctgctt Alignment from Pairagon GTGCTGGAGATTGTGAAGAAACTG-GAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG cgtatgaccccataaactcggggtctgcagctgcttctctttcctgttagGTGCTGGAGATTGTGAAGAAACTGCGAGTCCCGTCAGCGTGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCCTAGTGTTCAATGCCACTTCTGAATTCTGCCGCACACTGGGGGAGATCCCCACCTATGGGTTGGCTGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaacgcaactgtttcctggcttttgtccttaggctgctgatttctgctt Alignment from Exonerate_protein2genome GTGCTGGAGATTGTGAAGAAACTG-GAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG cgtatgaccccataaactcggggtctgcagctgcttctctttcctgttagGTGCTGGAGATTGTGAAGAAACTGCGAGTCCCGTCAGCGTGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCCTAGTGTTCAATGCCACTTCTGAATTCTGCCGCACACTGGGGGAGATCCCCACCTATGGGTTGGCTGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaacgcaactgtttcctggcttttgtccttaggctgctgatttctgctt Alignment from Exonerate_coding2genome GTGCTGGAGATTGTGAAGAAACTG-GAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG cgtatgaccccataaactcggggtctgcagctgcttctctttcctgttagGTGCTGGAGATTGTGAAGAAACTGCGAGTCCCGTCAGCGTGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCCTAGTGTTCAATGCCACTTCTGAATTCTGCCGCACACTGGGGGAGATCCCCACCTATGGGTTGGCTGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaacgcaactgtttcctggcttttgtccttaggctgctgatttctgctt Alignment from GeneWise GTGCTGGAGATTGTGAAGAAA-CTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG cgtatgaccccataaactcggggtctgcagctgcttctctttcctgttagGTGCTGGAGATTGTGAAGAAACTGCGAGTCCCGTCAGCGTGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCCTAGTGTTCAATGCCACTTCTGAATTCTGCCGCACACTGGGGGAGATCCCCACCTATGGGTTGGCTGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaacgcaactgtttcctggcttttgtccttaggctgctgatttctgctt #### Sart1_ID964_11 --> 1 - 1 Original Alignment gCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCG-GATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAg gtggaccagcttaggagataccatttacatggaaaattatatttttctaggCTCCGGGGCCGGGGTCGGCGCCGAGTTCCC------GAGGAGGAGACCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGCGATGACACTCGAGTC------ATGGACATCAGTGATGAAggtaaagggttggctgatggggacagggtgagtctgcaggcaagggcagtt Alignment from CESAR gCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCG-GATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAg gtggaccagcttaggagataccatttacatggaaaattatatttttctaggCTCCGGGGCCGGGGTCGGCGCCGAGTTCCC------GAGGAGGAGACCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGCGATGACACTCGAGTC------ATGGACATCAGTGATGAAggtaaagggttggctgatggggacagggtgagtctgcaggcaagggcagtt Alignment from Spaln_aa2Genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCG-GATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG gtggaccagcttaggagataccatttacatggaaaattatatttttctagGCTCCGGGGCCGGGGTCGGCGCCGAGTTCCC------GAGGAGGAGACCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGcGATGACACTCGAGTC------ATGGACATCAGTGATGAAGgtaaagggttggctgatggggacagggtgagtctgcaggcaagggcagtt Alignment from Spaln_nt2Genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCG-GATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG gtggaccagcttaggagataccatttacatggaaaattatatttttctagGCTCCGGGGCCGGGGTCGGCGCCGAGTTCCCGAGGA------GGAGACCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGCGATGACACTCGAGT------CATGGACATCAGTGATGAAGgtaaagggttggctgatggggacagggtgagtctgcaggcaagggcagtt Alignment from Pairagon GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCG-GATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG gtggaccagcttaggagataccatttacatggaaaattatatttttctagGCTCCGGGGCCGGGGTCGGCGCCGAGTTCCC------GAGGAGGAGACCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGCGATGACACTCGAGT------CATGGACATCAGTGATGAAGgtaaagggttggctgatggggacagggtgagtctgcaggcaagggcagtt Alignment from Exonerate_protein2genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCG-GATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG gtggaccagcttaggagataccatttacatggaaaattatatttttctagGCTCCGGGGCCGGGGTCGGCGCCGAGTTCCC------GAGGAGGAGACCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGCGATGACACTCGAGTC------ATGGACATCAGTGATGAAGgtaaagggttggctgatggggacagggtgagtctgcaggcaagggcagtt Alignment from Exonerate_coding2genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCG-GATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG gtggaccagcttaggagataccatttacatggaaaattatatttttctagGCTCCGGGGCCGGGGTCGGCGCCGAGTTCCC------GAGGAGGAGACCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGCGATGACACTCGAGTC------ATGGACATCAGTGATGAAGgtaaagggttggctgatggggacagggtgagtctgcaggcaagggcagtt Alignment from GeneWise GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCA-TCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG gtggaccagcttaggagataccatttacatggaaaattatatttttctagGCTCCGGGGCCGGGGTCGGCGCCGAGTTCCC------GAGGAGGAGACCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGCGATGACACTCGAGTC------ATGGACATCAGTGATGAAGgtaaagggttggctgatggggacagggtgagtctgcaggcaagggcagtt #### Sart1_ID967_8 --> 2 - 0 Original Alignment ggGTACTGCAGGACGGGGAGGACGTGCTGGTGAAT-GTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG caatggagctgtgacagatggtgactgttgcttcttgggccatgccacagggGTACTGCAGGACGGGGAAGATGTGCTGGTGAATCGTGAACATGGTGGACAAGGAGCGGGCAGATAAAAACGTGGAGCTTCGGAAAGAGAAGCCTGACTACCTGCCCTATGTGGAAGAAGAGAGTGTGGATGATTTGGCACAGgtaagactgtggggcagccgctggggcagatggtgtttgctatgaaatct Alignment from CESAR ggGTACTGCAGGACGGGGAGGACGTGCTGGTGAAT-GTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG caatggagctgtgacagatggtgactgttgcttcttgggccatgccacagggGTACTGCAGGACGGGGAAGATGTGCTGGTGAATCGTGAACATGGTGGACAAGGAGCGGGCAGATAAAAACGTGGAGCTTCGGAAAGAGAAGCCTGACTACCTGCCCTATGTGGAAGAAGAGAGTGTGGATGATTTGGCACAGgtaagactgtggggcagccgctggggcagatggtgtttgctatgaaatct Alignment from Spaln_aa2Genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAAT-GTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG caatggagctgtgacagatggtgactgttgcttcttgggccatgccacagGGGTACTGCAGGACGGGGAAGATGTGCTGGTGAATcGTGAACATGGTGGACAAGGAGCGGGCAGATAAAAACGTGGAGCTTCGGAAAGAGAAGCCTGACTACCTGCCCTATGTGGAAGAAGAGAGTGTGGATGATTTGGCACAGgtaagactgtggggcagccgctggggcagatggtgtttgctatgaaatct Alignment from Spaln_nt2Genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAAT-GTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG caatggagctgtgacagatggtgactgttgcttcttgggccatgccacagGGGTACTGCAGGACGGGGAAGATGTGCTGGTGAATCGTGAACATGGTGGACAAGGAGCGGGCAGATAAAAACGTGGAGCTTCGGAAAGAGAAGCCTGACTACCTGCCCTATGTGGAAGAAGAGAGTGTGGATGATTTGGCACAGgtaagactgtggggcagccgctggggcagatggtgtttgctatgaaatct Alignment from Pairagon GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAAT-GTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG caatggagctgtgacagatggtgactgttgcttcttgggccatgccacagGGGTACTGCAGGACGGGGAAGATGTGCTGGTGAATCGTGAACATGGTGGACAAGGAGCGGGCAGATAAAAACGTGGAGCTTCGGAAAGAGAAGCCTGACTACCTGCCCTATGTGGAAGAAGAGAGTGTGGATGATTTGGCACAGgtaagactgtggggcagccgctggggcagatggtgtttgctatgaaatct Alignment from Exonerate_protein2genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAAT-GTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG caatggagctgtgacagatggtgactgttgcttcttgggccatgccacagGGGTACTGCAGGACGGGGAAGATGTGCTGGTGAATCGTGAACATGGTGGACAAGGAGCGGGCAGATAAAAACGTGGAGCTTCGGAAAGAGAAGCCTGACTACCTGCCCTATGTGGAAGAAGAGAGTGTGGATGATTTGGCACAGgtaagactgtggggcagccgctggggcagatggtgtttgctatgaaatct Alignment from Exonerate_coding2genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAAT-GTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG caatggagctgtgacagatggtgactgttgcttcttgggccatgccacagGGGTACTGCAGGACGGGGAAGATGTGCTGGTGAATCGTGAACATGGTGGACAAGGAGCGGGCAGATAAAAACGTGGAGCTTCGGAAAGAGAAGCCTGACTACCTGCCCTATGTGGAAGAAGAGAGTGTGGATGATTTGGCACAGgtaagactgtggggcagccgctggggcagatggtgtttgctatgaaatct Alignment from GeneWise GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAAT-GTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG caatggagctgtgacagatggtgactgttgcttcttgggccatgccacagGGGTACTGCAGGACGGGGAAGATGTGCTGGTGAATCGTGAACATGGTGGACAAGGAGCGGGCAGATAAAAACGTGGAGCTTCGGAAAGAGAAGCCTGACTACCTGCCCTATGTGGAAGAAGAGAGTGTGGATGATTTGGCACAGgtaagactgtggggcagccgctggggcagatggtgtttgctatgaaatct #### Sart1_ID968_7 --> 0 - 1 Original Alignment GACCTGTACAGTGCCCGGGACCTG-CAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAg cccagagttgagtggcatctggcttttgaaattctttcctcctcatttagGACCTGTACAGTGCCCGGGACCTGCCAAGGCCTCACTGTGGAACACGCTATTGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAggtgagtataactggttactctgtttgggtctagatgcaatggagctgtga Alignment from CESAR GACCTGTACAGTGCCCGGGACCTG-CAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAg cccagagttgagtggcatctggcttttgaaattctttcctcctcatttagGACCTGTACAGTGCCCGGGACCTGCCAAGGCCTCACTGTGGAACACGCTATTGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAggtgagtataactggttactctgtttgggtctagatgcaatggagctgtga Alignment from Spaln_aa2Genome GACCTGTACAGTGCCCGGGACCTG-CAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG cccagagttgagtggcatctggcttttgaaattctttcctcctcatttagGACCTGTACAGTGCCCGGGACCTGcCAAGGCCTCACTGTGGAACACGCTATTGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAGgtgagtataactggttactctgtttgggtctagatgcaatggagctgtga Alignment from Spaln_nt2Genome GACCTGTACAGTGCCCGGGACCTG-CAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG cccagagttgagtggcatctggcttttgaaattctttcctcctcatttagGACCTGTACAGTGCCCGGGACCTGCCAAGGCCTCACTGTGGAACACGCTATTGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAGgtgagtataactggttactctgtttgggtctagatgcaatggagctgtga Alignment from Pairagon GACCTGTACAGTGCCCGGGACCTG-CAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG cccagagttgagtggcatctggcttttgaaattctttcctcctcatttagGACCTGTACAGTGCCCGGGACCTGCCAAGGCCTCACTGTGGAACACGCTATTGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAGgtgagtataactggttactctgtttgggtctagatgcaatggagctgtga Alignment from Exonerate_protein2genome GACCTGTACAGTGCCCGGGACCTG-CAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG cccagagttgagtggcatctggcttttgaaattctttcctcctcatttagGACCTGTACAGTGCCCGGGACCTGCCAAGGCCTCACTGTGGAACACGCTATTGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAGgtgagtataactggttactctgtttgggtctagatgcaatggagctgtga Alignment from Exonerate_coding2genome GACCTGTACAGTGCCCGGGACCTG-CAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG cccagagttgagtggcatctggcttttgaaattctttcctcctcatttagGACCTGTACAGTGCCCGGGACCTGCCAAGGCCTCACTGTGGAACACGCTATTGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAGgtgagtataactggttactctgtttgggtctagatgcaatggagctgtga Alignment from GeneWise GACCTGTACAGTGCCCGGGAC-CTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG cccagagttgagtggcatctggcttttgaaattctttcctcctcatttagGACCTGTACAGTGCCCGGGACCTGCCAAGGCCTCACTGTGGAACACGCTATTGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAGgtgagtataactggttactctgtttgggtctagatgcaatggagctgtga #### Sart1_ID970_5 --> 1 - 0 Original Alignment gAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGG-ATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG cgagaacacatttaggtttgttactaagctcatgctgacttttatttcaggAAAATAAAGACCCTAGGAGAGGACGACCCCTGGCTGGATGATACTGCAGCCTGGCATAGAGAGGAGCCGTCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGAGAgtactggcacttggcaatgtagagcagttgccagggtggtctgtgctcag Alignment from CESAR gAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGG-ATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG cgagaacacatttaggtttgttactaagctcatgctgacttttatttcaggAAAATAAAGACCCTAGGAGAGGACGACCCCTGGCTGGATGATACTGCAGCCTGGCATAGAGAGGAGCCGTCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGAGAgtactggcacttggcaatgtagagcagttgccagggtggtctgtgctcag Alignment from Spaln_aa2Genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGG-ATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG cgagaacacatttaggtttgttactaagctcatgctgacttttatttcagGAAAATAAAGACCCTAGGAGAGGACGACCCCTGGCTGGATGATACTGCAGCCTGGcATAGAGAGGAGCCGTCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGAGAgtactggcacttggcaatgtagagcagttgccagggtggtctgtgctcag Alignment from Spaln_nt2Genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGG-ATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG cgagaacacatttaggtttgttactaagctcatgctgacttttatttcagGAAAATAAAGACCCTAGGAGAGGACGACCCCTGGCTGGATGATACTGCAGCCTGGCATAGAGAGGAGCCGTCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGAGAgtactggcacttggcaatgtagagcagttgccagggtggtctgtgctcag Alignment from Pairagon GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGG-ATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG cgagaacacatttaggtttgttactaagctcatgctgacttttatttcagGAAAATAAAGACCCTAGGAGAGGACGACCCCTGGCTGGATGATACTGCAGCCTGGCATAGAGAGGAGCCGTCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGAGAgtactggcacttggcaatgtagagcagttgccagggtggtctgtgctcag Alignment from Exonerate_protein2genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGG-ATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG cgagaacacatttaggtttgttactaagctcatgctgacttttatttcagGAAAATAAAGACCCTAGGAGAGGACGACCCCTGGCTGGATGATACTGCAGCCTGGCATAGAGAGGAGCCGTCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGAGAgtactggcacttggcaatgtagagcagttgccagggtggtctgtgctcag Alignment from Exonerate_coding2genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGG-ATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG cgagaacacatttaggtttgttactaagctcatgctgacttttatttcagGAAAATAAAGACCCTAGGAGAGGACGACCCCTGGCTGGATGATACTGCAGCCTGGCATAGAGAGGAGCCGTCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGAGAgtactggcacttggcaatgtagagcagttgccagggtggtctgtgctcag Alignment from GeneWise GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGG-ATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG cgagaacacatttaggtttgttactaagctcatgctgacttttatttcagGAAAATAAAGACCCTAGGAGAGGACGACCCCTGGCTGGATGATACTGCAGCCTGGCATAGAGAGGAGCCGTCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGAGAgtactggcacttggcaatgtagagcagttgccagggtggtctgtgctcag #### Sart1_ID972_3 --> 1 - 1 Original Alignment tAAACTCCGAGCAAAGTTGGGGCTGAAGCCCTTGGAGGTCAAT-GCTGTTAAGAAAg acttgaagtcccacttctcggagcctaatggatccaagaaggaagccaagtAAACTCCGAGCAAAGTTGGGGCTGAAGCCCCTGGAGGTCAATCGCTGTTAAGAAAggtgggtgcaaggcagaggagagggctgagtggggttctgagggaaacagt Alignment from CESAR tAAACTCCGAGCAAAGTTGGGGCTGAAGCCCTTGGAGGTCAAT-GCTGTTAAGAAAg acttgaagtcccacttctcggagcctaatggatccaagaaggaagccaagtAAACTCCGAGCAAAGTTGGGGCTGAAGCCCCTGGAGGTCAATCGCTGTTAAGAAAggtgggtgcaaggcagaggagagggctgagtggggttctgagggaaacagt Alignment from Spaln_aa2Genome TAAACTCCGAGCAAAGTTGGGGCTGAAGCCCTTGGAGGTCAAT-GCTGTTAAGAAAG acttgaagtcccacttctcggagcctaatggatccaagaaggaagccaagTAAACTCCGAGCAAAGTTGGGGCTGAAGCCCCTGGAGGTCAATcGCTGTTAAGAAAGgtgggtgcaaggcagaggagagggctgagtggggttctgagggaaacagt Alignment from Spaln_nt2Genome TAAACTCCGAGCAAAGTTGGGGCTGAAGCCCTTGGAGGTCAAT-GCTGTTAAGAAAG acttgaagtcccacttctcggagcctaatggatccaagaaggaagccaagTAAACTCCGAGCAAAGTTGGGGCTGAAGCCCCTGGAGGTCAATCGCTGTTAAGAAAGgtgggtgcaaggcagaggagagggctgagtggggttctgagggaaacagt Alignment from Pairagon TAAACTCCGAGCAAAGTTGGGGCTGAAGCCCTTGGAGGTCAAT-GCTGTTAAGAAAG acttgaagtcccacttctcggagcctaatggatccaagaaggaagccaagTAAACTCCGAGCAAAGTTGGGGCTGAAGCCCCTGGAGGTCAATCGCTGTTAAGAAAGgtgggtgcaaggcagaggagagggctgagtggggttctgagggaaacagt Alignment from Exonerate_protein2genome TAAACTCCGAGCAAAGTTGGGGCTGAAGCCCTTGGAGGTCAAT-GCTGTTAAGAAAG acttgaagtcccacttctcggagcctaatggatccaagaaggaagccaagTAAACTCCGAGCAAAGTTGGGGCTGAAGCCCCTGGAGGTCAATCGCTGTTAAGAAAGgtgggtgcaaggcagaggagagggctgagtggggttctgagggaaacagt Alignment from Exonerate_coding2genome TAAACTCCGAGCAAAGTTGGGGCTGAAGCCCTTGGAGGTCAAT-GCTGTTAAGAAAG acttgaagtcccacttctcggagcctaatggatccaagaaggaagccaagTAAACTCCGAGCAAAGTTGGGGCTGAAGCCCCTGGAGGTCAATCGCTGTTAAGAAAGgtgggtgcaaggcagaggagagggctgagtggggttctgagggaaacagt Alignment from GeneWise TAAACTCCGAGCAAAGTTGGGGCTGAAGCCCTTGGAGGTCAATGCTGTTAAGAAAG acttgaagtcccacttctcggagcctaatggatccaagaaggaagccaagTAAACTCCGAGCAAAGTTGGGGCTGAAGCCCCTGGAGGTCAAT---------CGCTgttaagaaaggtgggtgcaaggcagaggagagggctgagtggggttctgagggaaacagt #### Sec31b_ID9029_23 --> 0 - 0 Original Alignment CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGAC-AGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT agccatgaataaagctcacttccagttcgcatgttctcttccctacacagCAACTCCAGCCATTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAACATCAGTGTGTCAAGGACCAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACTGCAACTGGCCTTgtaactatgggtcttcctgaacctgcttcttcagagccgcagcaggctcc Alignment from CESAR CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGAC-AGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT agccatgaataaagctcacttccagttcgcatgttctcttccctacacagCAACTCCAGCCATTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAACATCAGTGTGTCAAGGACCAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACTGCAACTGGCCTTgtaactatgggtcttcctgaacctgcttcttcagagccgcagcaggctcc Alignment from Spaln_aa2Genome CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGAC-AGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT agccatgaataaagctcacttccagttcgcatgttctcttccctacacagCAACTCCAGCCATTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAACATCAGTGTGTCAAGGACcAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACTGCAACTGGCCTTgtaactatgggtcttcctgaacctgcttcttcagagccgcagcaggctcc Alignment from Spaln_nt2Genome CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGA-CAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT agccatgaataaagctcacttccagttcgcatgttctcttccctacacagCAACTCCAGCCATTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAACATCAGTGTGTCAAGGACCAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACTGCAACTGGCCTTgtaactatgggtcttcctgaacctgcttcttcagagccgcagcaggctcc Alignment from Pairagon CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGA-CAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT agccatgaataaagctcacttccagttcgcatgttctcttccctacacagCAACTCCAGCCATTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAACATCAGTGTGTCAAGGACCAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACTGCAACTGGCCTTgtaactatgggtcttcctgaacctgcttcttcagagccgcagcaggctcc Alignment from Exonerate_protein2genome CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGAC-AGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT agccatgaataaagctcacttccagttcgcatgttctcttccctacacagCAACTCCAGCCATTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAACATCAGTGTGTCAAGGACCAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACTGCAACTGGCCTTgtaactatgggtcttcctgaacctgcttcttcagagccgcagcaggctcc Alignment from Exonerate_coding2genome CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGAC-AGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT agccatgaataaagctcacttccagttcgcatgttctcttccctacacagCAACTCCAGCCATTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAACATCAGTGTGTCAAGGACCAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACTGCAACTGGCCTTgtaactatgggtcttcctgaacctgcttcttcagagccgcagcaggctcc Alignment from GeneWise CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGAC-AGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT agccatgaataaagctcacttccagttcgcatgttctcttccctacacagCAACTCCAGCCATTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAACATCAGTGTGTCAAGGACCAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACTGCAACTGGCCTTgtaactatgggtcttcctgaacctgcttcttcagagccgcagcaggctcc #### Sec31b_ID9030_22 --> 0 - 0 Original Alignment CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGT-GCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctatgtggttgcccattcatctgggttctctttgacagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGAGCCACAACAGGCCCTGCTATCTCAGCCCCTAGTCTCCAGTCGCAACCTTACCTCCTCCTGGAGCCCCGAGAGAATGCAGCCTGCAAgtaagcagaactgtgggcccctcccctgatgcgaccccacctgaacttgg Alignment from CESAR CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGT-GCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctatgtggttgcccattcatctgggttctctttgacagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGAGCCACAACAGGCCCTGCTATCTCAGCCCCTAGTCTCCAGTCGCAACCTTACCTCCTCCTGGAGCCCCGAGAGAATGCAGCCTGCAAgtaagcagaactgtgggcccctcccctgatgcgaccccacctgaacttgg Alignment from Spaln_aa2Genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGT-GCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctatgtggttgcccattcatctgggttctctttgacagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGAGCCACAACAGGCCCTGCTATCTCAGCCCCTAGTCTCCAGTcGCAACCTTACCTCCTCCTGGAGCCCCGAGAGAATGCAGCCTGCAAgtaagcagaactgtgggcccctcccctgatgcgaccccacctgaacttgg Alignment from Spaln_nt2Genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGT-GCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctatgtggttgcccattcatctgggttctctttgacagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGAGCCACAACAGGCCCTGCTATCTCAGCCCCTAGTCTCCAGTCGCAACCTTACCTCCTCCTGGAGCCCCGAGAGAATGCAGCCTGCAAgtaagcagaactgtgggcccctcccctgatgcgaccccacctgaacttgg Alignment from Pairagon CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGT-GCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctatgtggttgcccattcatctgggttctctttgacagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGAGCCACAACAGGCCCTGCTATCTCAGCCCCTAGTCTCCAGTCGCAACCTTACCTCCTCCTGGAGCCCCGAGAGAATGCAGCCTGCAAgtaagcagaactgtgggcccctcccctgatgcgaccccacctgaacttgg Alignment from Exonerate_protein2genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGT-GCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctatgtggttgcccattcatctgggttctctttgacagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGAGCCACAACAGGCCCTGCTATCTCAGCCCCTAGTCTCCAGTCGCAACCTTACCTCCTCCTGGAGCCCCGAGAGAATGCAGCCTGCAAgtaagcagaactgtgggcccctcccctgatgcgaccccacctgaacttgg Alignment from Exonerate_coding2genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGT-GCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctatgtggttgcccattcatctgggttctctttgacagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGAGCCACAACAGGCCCTGCTATCTCAGCCCCTAGTCTCCAGTCGCAACCTTACCTCCTCCTGGAGCCCCGAGAGAATGCAGCCTGCAAgtaagcagaactgtgggcccctcccctgatgcgaccccacctgaacttgg Alignment from GeneWise CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCC-AGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTGCAG acctgtggttgtctatgtggttgcccattcatctgggttctctttgacagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGAGCCACAACAGGCCCTGCTATCTCAGCCCCTAGTCTCCAGTCGCAACCTTACCTCCTCCTGGAGCCCCGAGAGAATGCAGCCTGCAAgtaagcagaactgtgggcccctcccctgatgcgaccccacctgaacttgg #### Sec31b_ID9031_21 --> 2 - 0 Original Alignment gaCCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAG-GGAAACCTCCAAAGGAAAAAG atcaaggttcttaactaggcccctagaaaacagtggtttggtattttcaggaCCCCAGGACTCGTGGAAAGTTTCTCCTGCCTCCCAGCGGAAACCTCCAAAGGAAAAAGgtaagggcatctttccctaaccagtgacccatttcctagttcagccccac Alignment from CESAR gaCCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAG-GGAAACCTCCAAAGGAAAAAG atcaaggttcttaactaggcccctagaaaacagtggtttggtattttcaggaCCCCAGGACTCGTGGAAAGTTTCTCCTGCCTCCCAGCGGAAACCTCCAAAGGAAAAAGgtaagggcatctttccctaaccagtgacccatttcctagttcagccccac Alignment from Spaln_aa2Genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAG-GGAAACCTCCAAAGGAAAAAG atcaaggttcttaactaggcccctagaaaacagtggtttggtattttcagGACCCCAGGACTCGTGGAAAGTTTCTCCTGCCTCCCAGcGGAAACCTCCAAAGGAAAAAGgtaagggcatctttccctaaccagtgacccatttcctagttcagccccac Alignment from Spaln_nt2Genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAG-GGAAACCTCCAAAGGAAAAAG atcaaggttcttaactaggcccctagaaaacagtggtttggtattttcagGACCCCAGGACTCGTGGAAAGTTTCTCCTGCCTCCCAGCGGAAACCTCCAAAGGAAAAAGgtaagggcatctttccctaaccagtgacccatttcctagttcagccccac Alignment from Pairagon GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAG-GGAAACCTCCAAAGGAAAAAG atcaaggttcttaactaggcccctagaaaacagtggtttggtattttcagGACCCCAGGACTCGTGGAAAGTTTCTCCTGCCTCCCAGCGGAAACCTCCAAAGGAAAAAGgtaagggcatctttccctaaccagtgacccatttcctagttcagccccac Alignment from Exonerate_protein2genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAG-GGAAACCTCCAAAGGAAAAAG atcaaggttcttaactaggcccctagaaaacagtggtttggtattttcagGACCCCAGGACTCGTGGAAAGTTTCTCCTGCCTCCCAGCGGAAACCTCCAAAGGAAAAAGgtaagggcatctttccctaaccagtgacccatttcctagttcagccccac Alignment from Exonerate_coding2genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAG-GGAAACCTCCAAAGGAAAAAG atcaaggttcttaactaggcccctagaaaacagtggtttggtattttcagGACCCCAGGACTCGTGGAAAGTTTCTCCTGCCTCCCAGCGGAAACCTCCAAAGGAAAAAGgtaagggcatctttccctaaccagtgacccatttcctagttcagccccac Alignment from GeneWise GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCC-CAGGGAAACCTCCAAAGGAAAAAG atcaaggttcttaactaggcccctagaaaacagtggtttggtattttcagGACCCCAGGACTCGTGGAAAGTTTCTCCTGCCTCCCAGCGGAAACCTCCAAAGGAAAAAGgtaagggcatctttccctaaccagtgacccatttcctagttcagccccac #### Sec31b_ID9040_12 --> 0 - 0 Original Alignment GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAG-CTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgagacacttgcgggggcctggctggcgatgtgttttcttttttcatagGTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGTGCCCAGgtggggttggagtctggggaacctgactcctgggagcgcaggagacatac Alignment from CESAR GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAG-CTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgagacacttgcgggggcctggctggcgatgtgttttcttttttcatagGTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGTGCCCAGgtggggttggagtctggggaacctgactcctgggagcgcaggagacatac Alignment from Spaln_aa2Genome GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAG-CTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgagacacttgcgggggcctggctggcgatgtgttttcttttttcatagGTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGcCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGTGCCCAGgtggggttggagtctggggaacctgactcctgggagcgcaggagacatac Alignment from Spaln_nt2Genome GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAG-CTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgagacacttgcgggggcctggctggcgatgtgttttcttttttcatagGTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGTGCCCAGgtggggttggagtctggggaacctgactcctgggagcgcaggagacatac Alignment from Pairagon GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAG-CTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgagacacttgcgggggcctggctggcgatgtgttttcttttttcatagGTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGTGCCCAGgtggggttggagtctggggaacctgactcctgggagcgcaggagacatac Alignment from Exonerate_protein2genome GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAG-CTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgagacacttgcgggggcctggctggcgatgtgttttcttttttcatagGTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGTGCCCAGgtggggttggagtctggggaacctgactcctgggagcgcaggagacatac Alignment from Exonerate_coding2genome GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAG-CTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgagacacttgcgggggcctggctggcgatgtgttttcttttttcatagGTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGTGCCCAGgtggggttggagtctggggaacctgactcctgggagcgcaggagacatac Alignment from GeneWise GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAG-CTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgagacacttgcgggggcctggctggcgatgtgttttcttttttcatagGTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAAAGCCCTCAGCCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGTGCCCAGgtggggttggagtctggggaacctgactcctgggagcgcaggagacatac #### Sema4g_ID9244_2 --> 2 - 0 Original Alignment agCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTC-TCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG tggggataggaagtattccccagctggctttgttactgttttaactctagagCTGTCCCAGATACGACACTTCAAGGGCCAAGCCCAAAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAAAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCCTCCCTCAGTGCGCGTGACATAAGAGAGAGGACTCACAAAGAGgtaaaatcctggcgtttggtctcacagggtctccagcttgttgggaccac Alignment from CESAR agCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTC-TCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG tggggataggaagtattccccagctggctttgttactgttttaactctagagCTGTCCCAGATACGACACTTCAAGGGCCAAGCCCAAAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAAAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCCTCCCTCAGTGCGCGTGACATAAGAGAGAGGACTCACAAAGAGgtaaaatcctggcgtttggtctcacagggtctccagcttgttgggaccac Alignment from Spaln_aa2Genome AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTC-TCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG tggggataggaagtattccccagctggctttgttactgttttaactctagAGCTGTCCCAGATACGACACTTCAAGGGCCAAGCCCAAAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAAAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCcTCCCTCAGTGCGCGTGACATAAGAGAGAGGACTCACAAAGAGgtaaaatcctggcgtttggtctcacagggtctccagcttgttgggaccac Alignment from Spaln_nt2Genome AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTT-CTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG tggggataggaagtattccccagctggctttgttactgttttaactctagAGCTGTCCCAGATACGACACTTCAAGGGCCAAGCCCAAAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAAAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCCTCCCTCAGTGCGCGTGACATAAGAGAGAGGACTCACAAAGAGgtaaaatcctggcgtttggtctcacagggtctccagcttgttgggaccac Alignment from Pairagon AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTT-CTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG tggggataggaagtattccccagctggctttgttactgttttaactctagAGCTGTCCCAGATACGACACTTCAAGGGCCAAGCCCAAAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAAAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCCTCCCTCAGTGCGCGTGACATAAGAGAGAGGACTCACAAAGAGgtaaaatcctggcgtttggtctcacagggtctccagcttgttgggaccac Alignment from Exonerate_protein2genome AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTC-TCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG tggggataggaagtattccccagctggctttgttactgttttaactctagAGCTGTCCCAGATACGACACTTCAAGGGCCAAGCCCAAAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAAAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCCTCCCTCAGTGCGCGTGACATAAGAGAGAGGACTCACAAAGAGgtaaaatcctggcgtttggtctcacagggtctccagcttgttgggaccac Alignment from Exonerate_coding2genome AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTC-TCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG tggggataggaagtattccccagctggctttgttactgttttaactctagAGCTGTCCCAGATACGACACTTCAAGGGCCAAGCCCAAAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAAAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCCTCCCTCAGTGCGCGTGACATAAGAGAGAGGACTCACAAAGAGgtaaaatcctggcgtttggtctcacagggtctccagcttgttgggaccac Alignment from GeneWise AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTC-TCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG tggggataggaagtattccccagctggctttgttactgttttaactctagAGCTGTCCCAGATACGACACTTCAAGGGCCAAGCCCAAAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAAAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCCTCCCTCAGTGCGCGTGACATAAGAGAGAGGACTCACAAAGAGgtaaaatcctggcgtttggtctcacagggtctccagcttgttgggaccac #### Sema4g_ID9249_7 --> 2 - 0 Original Alignment atGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTA-GCCCGTGTGTGCAAG gagggcttgacctgtttcataagccaccttttcttttgcatattttgcagatGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGTACAGTGGGTGATGATGACAGGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGCACGCCCGAGTATGCAAGgtcagtctgatgcactcagggtatggggaaagggaaaggccagacctctg Alignment from CESAR atGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTA-GCCCGTGTGTGCAAG gagggcttgacctgtttcataagccaccttttcttttgcatattttgcagatGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGTACAGTGGGTGATGATGACAGGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGCACGCCCGAGTATGCAAGgtcagtctgatgcactcagggtatggggaaagggaaaggccagacctctg Alignment from Spaln_aa2Genome ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTA-GCCCGTGTGTGCAAG gagggcttgacctgtttcataagccaccttttcttttgcatattttgcagATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGTACAGTGGGTGATGATGACAGGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGCAcGCCCGAGTATGCAAGgtcagtctgatgcactcagggtatggggaaagggaaaggccagacctctg Alignment from Spaln_nt2Genome ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTA-GCCCGTGTGTGCAAG gagggcttgacctgtttcataagccaccttttcttttgcatattttgcagATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGTACAGTGGGTGATGATGACAGGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGCACGCCCGAGTATGCAAGgtcagtctgatgcactcagggtatggggaaagggaaaggccagacctctg Alignment from Pairagon ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTA-GCCCGTGTGTGCAAG gagggcttgacctgtttcataagccaccttttcttttgcatattttgcagATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGTACAGTGGGTGATGATGACAGGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGCACGCCCGAGTATGCAAGgtcagtctgatgcactcagggtatggggaaagggaaaggccagacctctg Alignment from Exonerate_protein2genome ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTA-GCCCGTGTGTGCAAG gagggcttgacctgtttcataagccaccttttcttttgcatattttgcagATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGTACAGTGGGTGATGATGACAGGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGCACGCCCGAGTATGCAAGgtcagtctgatgcactcagggtatggggaaagggaaaggccagacctctg Alignment from Exonerate_coding2genome ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTA-GCCCGTGTGTGCAAG gagggcttgacctgtttcataagccaccttttcttttgcatattttgcagATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGTACAGTGGGTGATGATGACAGGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGCACGCCCGAGTATGCAAGgtcagtctgatgcactcagggtatggggaaagggaaaggccagacctctg Alignment from GeneWise ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGA-GTAGCCCGTGTGTGCAAG gagggcttgacctgtttcataagccaccttttcttttgcatattttgcagATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGTACAGTGGGTGATGATGACAGGATTTATTTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGCACGCCCGAGTATGCAAGgtcagtctgatgcactcagggtatggggaaagggaaaggccagacctctg #### Sema4g_ID9250_8 --> 0 - 2 Original Alignment GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCC-GTCTTCACACTGACAACACAGtg aagggaaaggccagacctctgaccctaaaaatcttgttttaattttctagGGAGATCTGGGTGGGAAAAAGATCCTGCAGAAGAAGTGGACATCCTTCCTGAAGGCTCGACTCATCTGCCACATCCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTGAATGCTGACACATCATCCCACACACATTTCTATGCCCGTCTTCACACTGACAACACAGtggtcagaacaggagtggtgagcacagatgttgggggaaaggaaaggaacag Alignment from CESAR GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCC-GTCTTCACACTGACAACACAGtg aagggaaaggccagacctctgaccctaaaaatcttgttttaattttctagGGAGATCTGGGTGGGAAAAAGATCCTGCAGAAGAAGTGGACATCCTTCCTGAAGGCTCGACTCATCTGCCACATCCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTGAATGCTGACACATCATCCCACACACATTTCTATGCCCGTCTTCACACTGACAACACAGtggtcagaacaggagtggtgagcacagatgttgggggaaaggaaaggaacag Alignment from Spaln_aa2Genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCC-GTCTTCACACTGACAACACAGTG aagggaaaggccagacctctgaccctaaaaatcttgttttaattttctagGGAGATCTGGGTGGGAAAAAGATCCTGCAGAAGAAGTGGACATCCTTCCTGAAGGCTCGACTCATCTGCCACATCCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTGAATGCTGACACATCATCCCACACACATTTCTATGCCcGTCTTCACACTGACAACACAGTGgtcagaacaggagtggtgagcacagatgttgggggaaaggaaaggaacag Alignment from Spaln_nt2Genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGC-CGTCTTCACACTGACAACACAGTG aagggaaaggccagacctctgaccctaaaaatcttgttttaattttctagGGAGATCTGGGTGGGAAAAAGATCCTGCAGAAGAAGTGGACATCCTTCCTGAAGGCTCGACTCATCTGCCACATCCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTGAATGCTGACACATCATCCCACACACATTTCTATGCCCGTCTTCACACTGACAACACAGTGgtcagaacaggagtggtgagcacagatgttgggggaaaggaaaggaacag Alignment from Pairagon GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATG-CCGTCTTCACACTGACAACACAGTG aagggaaaggccagacctctgaccctaaaaatcttgttttaattttctagGGAGATCTGGGTGGGAAAAAGATCCTGCAGAAGAAGTGGACATCCTTCCTGAAGGCTCGACTCATCTGCCACATCCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTGAATGCTGACACATCATCCCACACACATTTCTATGCCCGTCTTCACACTGACAACACAGTGgtcagaacaggagtggtgagcacagatgttgggggaaaggaaaggaacag Alignment from Exonerate_protein2genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCC-GTCTTCACACTGACAACACAGTG aagggaaaggccagacctctgaccctaaaaatcttgttttaattttctagGGAGATCTGGGTGGGAAAAAGATCCTGCAGAAGAAGTGGACATCCTTCCTGAAGGCTCGACTCATCTGCCACATCCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTGAATGCTGACACATCATCCCACACACATTTCTATGCCCGTCTTCACACTGACAACACAGTGgtcagaacaggagtggtgagcacagatgttgggggaaaggaaaggaacag Alignment from Exonerate_coding2genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCC-GTCTTCACACTGACAACACAGTG aagggaaaggccagacctctgaccctaaaaatcttgttttaattttctagGGAGATCTGGGTGGGAAAAAGATCCTGCAGAAGAAGTGGACATCCTTCCTGAAGGCTCGACTCATCTGCCACATCCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTGAATGCTGACACATCATCCCACACACATTTCTATGCCCGTCTTCACACTGACAACACAGTGgtcagaacaggagtggtgagcacagatgttgggggaaaggaaaggaacag Alignment from GeneWise GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTAT-GCCGTCTTCACACTGACAACACAGTG aagggaaaggccagacctctgaccctaaaaatcttgttttaattttctagGGAGATCTGGGTGGGAAAAAGATCCTGCAGAAGAAGTGGACATCCTTCCTGAAGGCTCGACTCATCTGCCACATCCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTGAATGCTGACACATCATCCCACACACATTTCTATGCCCGTCTTCACACTGACAACACAGTGgtcagaacaggagtggtgagcacagatgttgggggaaaggaaaggaacag #### Sema4g_ID9254_12 --> 0 - 2 Original Alignment CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCC-AGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACag aggctggggagagatagggcttgctgacaaaaaaaatttttttttggtagCACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTAGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCGTGCATGGTGGCCACCACCGTAGCCAACaggtgagtgggtgctggattaggaatggggtagatgtgcctcaagtggagga Alignment from CESAR CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCC-AGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACag aggctggggagagatagggcttgctgacaaaaaaaatttttttttggtagCACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTAGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCGTGCATGGTGGCCACCACCGTAGCCAACaggtgagtgggtgctggattaggaatggggtagatgtgcctcaagtggagga Alignment from Spaln_aa2Genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCC-AGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG aggctggggagagatagggcttgctgacaaaaaaaatttttttttggtagCACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCcAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTAGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCGTGCATGGTGGCCACCACCGTAGCCAACAGgtgagtgggtgctggattaggaatggggtagatgtgcctcaagtggagga Alignment from Spaln_nt2Genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGT-CCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG aggctggggagagatagggcttgctgacaaaaaaaatttttttttggtagCACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTAGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCGTGCATGGTGGCCACCACCGTAGCCAACAGgtgagtgggtgctggattaggaatggggtagatgtgcctcaagtggagga Alignment from Pairagon CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGT-CCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG aggctggggagagatagggcttgctgacaaaaaaaatttttttttggtagCACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTAGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCGTGCATGGTGGCCACCACCGTAGCCAACAGgtgagtgggtgctggattaggaatggggtagatgtgcctcaagtggagga Alignment from Exonerate_protein2genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCC-AGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG aggctggggagagatagggcttgctgacaaaaaaaatttttttttggtagCACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTAGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCGTGCATGGTGGCCACCACCGTAGCCAACAGgtgagtgggtgctggattaggaatggggtagatgtgcctcaagtggagga Alignment from Exonerate_coding2genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCC-AGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG aggctggggagagatagggcttgctgacaaaaaaaatttttttttggtagCACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTAGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCGTGCATGGTGGCCACCACCGTAGCCAACAGgtgagtgggtgctggattaggaatggggtagatgtgcctcaagtggagga Alignment from GeneWise CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCC-AGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG aggctggggagagatagggcttgctgacaaaaaaaatttttttttggtagCACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTAGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCGTGCATGGTGGCCACCACCGTAGCCAACAGgtgagtgggtgctggattaggaatggggtagatgtgcctcaagtggagga #### Sf1_ID1669_10 --> 0 - 1 Original Alignment TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTG-ACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGg gccatcagggggcaccggtgtggacattctatgccccttttgttttatagTCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGCACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGggtgagaaagtgttagaccagaacccttggggcttgggaggggggataggg Alignment from CESAR TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTG-ACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGg gccatcagggggcaccggtgtggacattctatgccccttttgttttatagTCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGCACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGggtgagaaagtgttagaccagaacccttggggcttgggaggggggataggg Alignment from Spaln_aa2Genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTG-ACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gccatcagggggcaccggtgtggacattctatgccccttttgttttatagTCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGcACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGGgtgagaaagtgttagaccagaacccttggggcttgggaggggggataggg Alignment from Spaln_nt2Genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTG-ACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gccatcagggggcaccggtgtggacattctatgccccttttgttttatagTCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGCACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGGgtgagaaagtgttagaccagaacccttggggcttgggaggggggataggg Alignment from Pairagon TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTG-ACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gccatcagggggcaccggtgtggacattctatgccccttttgttttatagTCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGCACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGGgtgagaaagtgttagaccagaacccttggggcttgggaggggggataggg Alignment from Exonerate_protein2genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTG-ACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gccatcagggggcaccggtgtggacattctatgccccttttgttttatagTCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGCACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGGgtgagaaagtgttagaccagaacccttggggcttgggaggggggataggg Alignment from Exonerate_coding2genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTG-ACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gccatcagggggcaccggtgtggacattctatgccccttttgttttatagTCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGCACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGGgtgagaaagtgttagaccagaacccttggggcttgggaggggggataggg Alignment from GeneWise TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGC-CTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gccatcagggggcaccggtgtggacattctatgccccttttgttttatagTCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGCACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGGgtgagaaagtgttagaccagaacccttggggcttgggaggggggataggg #### Sf1_ID1670_11 --> 2 - 1 Original Alignment atCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGG-GTCTATCGCCTGCATCAAGGAAAAg gggccagttcaaatgtcctaataatttctcagtactcgcccccttctcagatCAGTATCTGGGAAGTACGCCAGTGGGCTCTGGGCGTCTATCGCCTGCATCAAGGAAAAggtaagtccgcttactctcttgggatctctgtctaggactgggagcaaatg Alignment from CESAR atCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGG-GTCTATCGCCTGCATCAAGGAAAAg gggccagttcaaatgtcctaataatttctcagtactcgcccccttctcagatCAGTATCTGGGAAGTACGCCAGTGGGCTCTGGGCGTCTATCGCCTGCATCAAGGAAAAggtaagtccgcttactctcttgggatctctgtctaggactgggagcaaatg Alignment from Spaln_aa2Genome ATCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGG-GTCTATCGCCTGCATCAAGGAAAAG gggccagttcaaatgtcctaataatttctcagtactcgcccccttctcagATCAGTATCTGGGAAGTACGCCAGTGGGCTCTGGGcGTCTATCGCCTGCATCAAGGAAAAGgtaagtccgcttactctcttgggatctctgtctaggactgggagcaaatg Alignment from Spaln_nt2Genome ATCAGTACCTGGGAAGTACGCCTGTGGGCTCT-GGGGTCTATCGCCTGCATCAAGGAAAAG gggccagttcaaatgtcctaataatttctcagtactcgcccccttctcagATCAGTATCTGGGAAGTACGCCAGTGGGCTCTGGGCGTCTATCGCCTGCATCAAGGAAAAGgtaagtccgcttactctcttgggatctctgtctaggactgggagcaaatg Alignment from Pairagon ATCAGTACCTGGGAAGTACGCCTGTGGGCTCTGGG-GTCTATCGCCTGCATCAAGGAAAAG gggccagttcaaatgtcctaataatttctcagtactcgcccccttctcagATCAGTATCTGGGAAGTACGCCAGTGGGCTCTGGGCGTCTATCGCCTGCATCAAGGAAAAGgtaagtccgcttactctcttgggatctctgtctaggactgggagcaaatg Alignment from Exonerate_protein2genome ATCAGTACCTGGGAAGTACGCCTGTGGGCTCT-GGGGTCTATCGCCTGCATCAAGGAAAAG gggccagttcaaatgtcctaataatttctcagtactcgcccccttctcagATCAGTATCTGGGAAGTACGCCAGTGGGCTCTGGGCGTCTATCGCCTGCATCAAGGAAAAGgtaagtccgcttactctcttgggatctctgtctaggactgggagcaaatg Alignment from Exonerate_coding2genome ATCAGTACCTGGGAAGTACGCCTGTGGGCTCT-GGGGTCTATCGCCTGCATCAAGGAAAAG gggccagttcaaatgtcctaataatttctcagtactcgcccccttctcagATCAGTATCTGGGAAGTACGCCAGTGGGCTCTGGGCGTCTATCGCCTGCATCAAGGAAAAGgtaagtccgcttactctcttgggatctctgtctaggactgggagcaaatg Alignment from GeneWise ATCAGTACCTGGGAAGTACGCCTGTGGGC-TCTGGGGTCTATCGCCTGCATCAAGGAAAAG gggccagttcaaatgtcctaataatttctcagtactcgcccccttctcagATCAGTATCTGGGAAGTACGCCAGTGGGCTCTGGGCGTCTATCGCCTGCATCAAGGAAAAGgtaagtccgcttactctcttgggatctctgtctaggactgggagcaaatg #### Sf3b2_ID901_17 --> 0 - 2 Original Alignment ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCA-TCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACag agtgccagatacagtaagtacttgttgataatgcctctgtttccctttagACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCTCTCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGTGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACaggtcagtacagaggctgttcccctagagcagcctgcctgtctgtggctatg Alignment from CESAR ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCA-TCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACag agtgccagatacagtaagtacttgttgataatgcctctgtttccctttagACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCTCTCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGTGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACaggtcagtacagaggctgttcccctagagcagcctgcctgtctgtggctatg Alignment from Spaln_aa2Genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCA-TCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG agtgccagatacagtaagtacttgttgataatgcctctgtttccctttagACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCTcTCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGTGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtcagtacagaggctgttcccctagagcagcctgcctgtctgtggctatg Alignment from Spaln_nt2Genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCA-TCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG agtgccagatacagtaagtacttgttgataatgcctctgtttccctttagACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCTCTCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGTGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtcagtacagaggctgttcccctagagcagcctgcctgtctgtggctatg Alignment from Pairagon ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACC-ATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG agtgccagatacagtaagtacttgttgataatgcctctgtttccctttagACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCTCTCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGTGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtcagtacagaggctgttcccctagagcagcctgcctgtctgtggctatg Alignment from Exonerate_protein2genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCA-TCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG agtgccagatacagtaagtacttgttgataatgcctctgtttccctttagACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCTCTCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGTGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtcagtacagaggctgttcccctagagcagcctgcctgtctgtggctatg Alignment from Exonerate_coding2genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCA-TCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG agtgccagatacagtaagtacttgttgataatgcctctgtttccctttagACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCTCTCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGTGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtcagtacagaggctgttcccctagagcagcctgcctgtctgtggctatg Alignment from GeneWise ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCA-TCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG agtgccagatacagtaagtacttgttgataatgcctctgtttccctttagACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCTCTCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGTGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtcagtacagaggctgttcccctagagcagcctgcctgtctgtggctatg #### Sf3b2_ID904_14 --> 0 - 0 Original Alignment GGGAAGGAGTTTGAGACACGG-CTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT tctcagtatatccagaagccccgataaaaagcttaaacatctccctacagGGGAAGGAGTTTGAGACACGGCCTGAAGGAGAAGAAGCCTGGAGATTTATCGGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCTgtaagtgttggccgagtgcttgggaaagccagagagggggggaatgagaa Alignment from CESAR GGGAAGGAGTTTGAGACACGG-CTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT tctcagtatatccagaagccccgataaaaagcttaaacatctccctacagGGGAAGGAGTTTGAGACACGGCCTGAAGGAGAAGAAGCCTGGAGATTTATCGGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCTgtaagtgttggccgagtgcttgggaaagccagagagggggggaatgagaa Alignment from Spaln_aa2Genome GGGAAGGAGTTTGAGACACGG-CTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT tctcagtatatccagaagccccgataaaaagcttaaacatctccctacagGGGAAGGAGTTTGAGACACGGcCTGAAGGAGAAGAAGCCTGGAGATTTATCGGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCTgtaagtgttggccgagtgcttgggaaagccagagagggggggaatgagaa Alignment from Spaln_nt2Genome GGGAAGGAGTTTGAGACACGG-CTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT tctcagtatatccagaagccccgataaaaagcttaaacatctccctacagGGGAAGGAGTTTGAGACACGGCCTGAAGGAGAAGAAGCCTGGAGATTTATCGGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCTgtaagtgttggccgagtgcttgggaaagccagagagggggggaatgagaa Alignment from Pairagon GGGAAGGAGTTTGAGACACGG-CTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT tctcagtatatccagaagccccgataaaaagcttaaacatctccctacagGGGAAGGAGTTTGAGACACGGCCTGAAGGAGAAGAAGCCTGGAGATTTATCGGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCTgtaagtgttggccgagtgcttgggaaagccagagagggggggaatgagaa Alignment from Exonerate_protein2genome GGGAAGGAGTTTGAGACACGG-CTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT tctcagtatatccagaagccccgataaaaagcttaaacatctccctacagGGGAAGGAGTTTGAGACACGGCCTGAAGGAGAAGAAGCCTGGAGATTTATCGGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCTgtaagtgttggccgagtgcttgggaaagccagagagggggggaatgagaa Alignment from Exonerate_coding2genome GGGAAGGAGTTTGAGACACGG-CTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT tctcagtatatccagaagccccgataaaaagcttaaacatctccctacagGGGAAGGAGTTTGAGACACGGCCTGAAGGAGAAGAAGCCTGGAGATTTATCGGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCTgtaagtgttggccgagtgcttgggaaagccagagagggggggaatgagaa Alignment from GeneWise GGGAAGGAGTTTGAGACACGG-CTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT tctcagtatatccagaagccccgataaaaagcttaaacatctccctacagGGGAAGGAGTTTGAGACACGGCCTGAAGGAGAAGAAGCCTGGAGATTTATCGGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCTgtaagtgttggccgagtgcttgggaaagccagagagggggggaatgagaa #### Sf3b2_ID907_11 --> 0 - 0 Original Alignment GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGT-TTTACTGTGGCAGAACTCAAGCAG tggcagtttgattgctgcctgatgccacttctcaaactttgttcccttagGAAAAGAAGCCAGAAGCCCCTAAACTGTCAAAGAAGAAGTTGCGCCGAATGAATCGTCTTTACTGTGGCAGAGCTCAAGCAGgtgtgatctgggatggccaagtcagctctgcagccttgctgggaatcagc Alignment from CESAR GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGT-TTTACTGTGGCAGAACTCAAGCAG tggcagtttgattgctgcctgatgccacttctcaaactttgttcccttagGAAAAGAAGCCAGAAGCCCCTAAACTGTCAAAGAAGAAGTTGCGCCGAATGAATCGTCTTTACTGTGGCAGAGCTCAAGCAGgtgtgatctgggatggccaagtcagctctgcagccttgctgggaatcagc Alignment from Spaln_aa2Genome GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGT-TTTACTGTGGCAGAACTCAAGCAG tggcagtttgattgctgcctgatgccacttctcaaactttgttcccttagGAAAAGAAGCCAGAAGCCCCTAAACTGTCAAAGAAGAAGTTGCGCCGAATGAATCGTcTTTACTGTGGCAGAGCTCAAGCAGgtgtgatctgggatggccaagtcagctctgcagccttgctgggaatcagc Alignment from Spaln_nt2Genome GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGT-TTTACTGTGGCAGAACTCAAGCAG tggcagtttgattgctgcctgatgccacttctcaaactttgttcccttagGAAAAGAAGCCAGAAGCCCCTAAACTGTCAAAGAAGAAGTTGCGCCGAATGAATCGTCTTTACTGTGGCAGAGCTCAAGCAGgtgtgatctgggatggccaagtcagctctgcagccttgctgggaatcagc Alignment from Pairagon GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGT-TTTACTGTGGCAGAACTCAAGCAG tggcagtttgattgctgcctgatgccacttctcaaactttgttcccttagGAAAAGAAGCCAGAAGCCCCTAAACTGTCAAAGAAGAAGTTGCGCCGAATGAATCGTCTTTACTGTGGCAGAGCTCAAGCAGgtgtgatctgggatggccaagtcagctctgcagccttgctgggaatcagc Alignment from Exonerate_protein2genome GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGT-TTTACTGTGGCAGAACTCAAGCAG tggcagtttgattgctgcctgatgccacttctcaaactttgttcccttagGAAAAGAAGCCAGAAGCCCCTAAACTGTCAAAGAAGAAGTTGCGCCGAATGAATCGTCTTTACTGTGGCAGAGCTCAAGCAGgtgtgatctgggatggccaagtcagctctgcagccttgctgggaatcagc Alignment from Exonerate_coding2genome GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGT-TTTACTGTGGCAGAACTCAAGCAG tggcagtttgattgctgcctgatgccacttctcaaactttgttcccttagGAAAAGAAGCCAGAAGCCCCTAAACTGTCAAAGAAGAAGTTGCGCCGAATGAATCGTCTTTACTGTGGCAGAGCTCAAGCAGgtgtgatctgggatggccaagtcagctctgcagccttgctgggaatcagc Alignment from GeneWise ---AAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAAT-CGTTTTACTGTGGCAGAACTCAAGCAG tggcagtttgattgctgcctgatgccacttctcaaactttgttcccttagGAAAAGAAGCCAGAAGCCCCTAAACTGTCAAAGAAGAAGTTGCGCCGAATGAATCGTCTTTACTGTGGCAGAGCTCAAGCAGgtgtgatctgggatggccaagtcagctctgcagccttgctgggaatcagc #### Sf3b2_ID910_8 --> 2 - 0 Original Alignment agGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAG-GAGGACACGGTGTCCATATCCAAAAAAGAG ctgagatttttacagttaggagagttggttataatctctgaattatttagagAAGGAGGAAATGGAGACAGCTACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGCGAGGACACGGTGTCCATATCCAAAAAAGAGgtacgtgtctgggaggagcatgccaatattctgtgagcttcttggctatc Alignment from CESAR agGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAG-GAGGACACGGTGTCCATATCCAAAAAAGAG ctgagatttttacagttaggagagttggttataatctctgaattatttagagAAGGAGGAAATGGAGACAGCTACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGCGAGGACACGGTGTCCATATCCAAAAAAGAGgtacgtgtctgggaggagcatgccaatattctgtgagcttcttggctatc Alignment from Spaln_aa2Genome AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAG-GAGGACACGGTGTCCATATCCAAAAAAGAG ctgagatttttacagttaggagagttggttataatctctgaattatttagAGAAGGAGGAAATGGAGACAGCTACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGcGAGGACACGGTGTCCATATCCAAAAAAGAGgtacgtgtctgggaggagcatgccaatattctgtgagcttcttggctatc Alignment from Spaln_nt2Genome AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAG-GAGGACACGGTGTCCATATCCAAAAAAGAG ctgagatttttacagttaggagagttggttataatctctgaattatttagAGAAGGAGGAAATGGAGACAGCTACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGCGAGGACACGGTGTCCATATCCAAAAAAGAGgtacgtgtctgggaggagcatgccaatattctgtgagcttcttggctatc Alignment from Pairagon AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAG-GAGGACACGGTGTCCATATCCAAAAAAGAG ctgagatttttacagttaggagagttggttataatctctgaattatttagAGAAGGAGGAAATGGAGACAGCTACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGCGAGGACACGGTGTCCATATCCAAAAAAGAGgtacgtgtctgggaggagcatgccaatattctgtgagcttcttggctatc Alignment from Exonerate_protein2genome AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAG-GAGGACACGGTGTCCATATCCAAAAAAGAG ctgagatttttacagttaggagagttggttataatctctgaattatttagAGAAGGAGGAAATGGAGACAGCTACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGCGAGGACACGGTGTCCATATCCAAAAAAGAGgtacgtgtctgggaggagcatgccaatattctgtgagcttcttggctatc Alignment from Exonerate_coding2genome AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAG-GAGGACACGGTGTCCATATCCAAAAAAGAG ctgagatttttacagttaggagagttggttataatctctgaattatttagAGAAGGAGGAAATGGAGACAGCTACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGCGAGGACACGGTGTCCATATCCAAAAAAGAGgtacgtgtctgggaggagcatgccaatattctgtgagcttcttggctatc Alignment from GeneWise AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAG-GAGGACACGGTGTCCATATCCAAAAAAGAG ctgagatttttacagttaggagagttggttataatctctgaattatttagAGAAGGAGGAAATGGAGACAGCTACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGCGAGGACACGGTGTCCATATCCAAAAAAGAGgtacgtgtctgggaggagcatgccaatattctgtgagcttcttggctatc #### Sf3b2_ID911_7 --> 0 - 1 Original Alignment ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATT-CTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGg agaggaggaaggcattgggtttcagcccgctccctgccctctgtcctcagATGGATGATCCTTCTGTGGGCCCCAAGATCCCTCAGGCTTTGGAAAAGATTCCTTCAGCTGAAGGAGAGCCAGCAGGAAGAGATGAACTCTCAGCAGggtaattgctattgtatcttgatgctgcaacacaggactgagccatataag Alignment from CESAR ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATT-CTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGg agaggaggaaggcattgggtttcagcccgctccctgccctctgtcctcagATGGATGATCCTTCTGTGGGCCCCAAGATCCCTCAGGCTTTGGAAAAGATTCCTTCAGCTGAAGGAGAGCCAGCAGGAAGAGATGAACTCTCAGCAGggtaattgctattgtatcttgatgctgcaacacaggactgagccatataag Alignment from Spaln_aa2Genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATT-CTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG agaggaggaaggcattgggtttcagcccgctccctgccctctgtcctcagATGGATGATCCTTCTGTGGGCCCCAAGATCCCTCAGGCTTTGGAAAAGATTcCTTCAGCTGAAGGAGAGCCAGCAGGAAGAGATGAACTCTCAGCAGGgtaattgctattgtatcttgatgctgcaacacaggactgagccatataag Alignment from Spaln_nt2Genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATT-CTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG agaggaggaaggcattgggtttcagcccgctccctgccctctgtcctcagATGGATGATCCTTCTGTGGGCCCCAAGATCCCTCAGGCTTTGGAAAAGATTCCTTCAGCTGAAGGAGAGCCAGCAGGAAGAGATGAACTCTCAGCAGGgtaattgctattgtatcttgatgctgcaacacaggactgagccatataag Alignment from Pairagon ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATT-CTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG agaggaggaaggcattgggtttcagcccgctccctgccctctgtcctcagATGGATGATCCTTCTGTGGGCCCCAAGATCCCTCAGGCTTTGGAAAAGATTCCTTCAGCTGAAGGAGAGCCAGCAGGAAGAGATGAACTCTCAGCAGGgtaattgctattgtatcttgatgctgcaacacaggactgagccatataag Alignment from Exonerate_protein2genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATT-CTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG agaggaggaaggcattgggtttcagcccgctccctgccctctgtcctcagATGGATGATCCTTCTGTGGGCCCCAAGATCCCTCAGGCTTTGGAAAAGATTCCTTCAGCTGAAGGAGAGCCAGCAGGAAGAGATGAACTCTCAGCAGGgtaattgctattgtatcttgatgctgcaacacaggactgagccatataag Alignment from Exonerate_coding2genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATT-CTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG agaggaggaaggcattgggtttcagcccgctccctgccctctgtcctcagATGGATGATCCTTCTGTGGGCCCCAAGATCCCTCAGGCTTTGGAAAAGATTCCTTCAGCTGAAGGAGAGCCAGCAGGAAGAGATGAACTCTCAGCAGGgtaattgctattgtatcttgatgctgcaacacaggactgagccatataag Alignment from GeneWise ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATT-CTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG agaggaggaaggcattgggtttcagcccgctccctgccctctgtcctcagATGGATGATCCTTCTGTGGGCCCCAAGATCCCTCAGGCTTTGGAAAAGATTCCTTCAGCTGAAGGAGAGCCAGCAGGAAGAGATGAACTCTCAGCAGGgtaattgctattgtatcttgatgctgcaacacaggactgagccatataag #### Sf3b2_ID916_2 --> 2 - 0 Original Alignment ggAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACC-TACACCCGTCAG tggagcttggttacccaggagacccagattcctctctctgctccttccagggAGTCGTGAGGAGTTAGTAGAGCGGCTGCAGACCCTATACCCGTCAGgtgagcatttcatgcaggctaggtttcacttttcctggaggcctttaaga Alignment from CESAR ggAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACC-TACACCCGTCAG tggagcttggttacccaggagacccagattcctctctctgctccttccagggAGTCGTGAGGAGTTAGTAGAGCGGCTGCAGACCCTATACCCGTCAGgtgagcatttcatgcaggctaggtttcacttttcctggaggcctttaaga Alignment from Spaln_aa2Genome GGAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACC-TACACCCGTCAG tggagcttggttacccaggagacccagattcctctctctgctccttccagGGAGTCGTGAGGAGTTAGTAGAGCGGCTGCAGACCcTATACCCGTCAGgtgagcatttcatgcaggctaggtttcacttttcctggaggcctttaaga Alignment from Spaln_nt2Genome GGAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACC-TACACCCGTCAG tggagcttggttacccaggagacccagattcctctctctgctccttccagGGAGTCGTGAGGAGTTAGTAGAGCGGCTGCAGACCCTATACCCGTCAGgtgagcatttcatgcaggctaggtttcacttttcctggaggcctttaaga Alignment from Pairagon GGAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGA-CCTACACCCGTCAG tggagcttggttacccaggagacccagattcctctctctgctccttccagGGAGTCGTGAGGAGTTAGTAGAGCGGCTGCAGACCCTATACCCGTCAGgtgagcatttcatgcaggctaggtttcacttttcctggaggcctttaaga Alignment from Exonerate_protein2genome GGAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACC-TACACCCGTCAG tggagcttggttacccaggagacccagattcctctctctgctccttccagGGAGTCGTGAGGAGTTAGTAGAGCGGCTGCAGACCCTATACCCGTCAGgtgagcatttcatgcaggctaggtttcacttttcctggaggcctttaaga Alignment from Exonerate_coding2genome GGAGTCGCGAGGAGTTAGTAGAGCGGCTGCAGACC-TACACCCGTCAG tggagcttggttacccaggagacccagattcctctctctgctccttccagGGAGTCGTGAGGAGTTAGTAGAGCGGCTGCAGACCCTATACCCGTCAGgtgagcatttcatgcaggctaggtttcacttttcctggaggcctttaaga Alignment from GeneWise GGAGTCGCGAGGAGTTAGTAGAGCGGCTGCAG-ACCTACACCCGTCAG tggagcttggttacccaggagacccagattcctctctctgctccttccagGGAGTCGTGAGGAGTTAGTAGAGCGGCTGCAGACCCTATACCCGTCAGgtgagcatttcatgcaggctaggtttcacttttcctggaggcctttaaga #### Sfxn3_ID9286_4 --> 1 - 0 Original Alignment gCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAG-TCTCTCACCAAG aaactcgggctggacacatctctccctgttccccacctgattgtccctaggCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGCTCTCTCACCAAGgtgggctctccctaccactattggcctctcacagatcctttaccctttgt Alignment from CESAR gCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAG-TCTCTCACCAAG aaactcgggctggacacatctctccctgttccccacctgattgtccctaggCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGCTCTCTCACCAAGgtgggctctccctaccactattggcctctcacagatcctttaccctttgt Alignment from Spaln_aa2Genome GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAA aaactcgggctggacacatctctccctgttccccacctgattgtccctagGCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAgctctctcaccaaggtgggctctccctaccactattggcctctcacagatcctttaccctttgt Alignment from Spaln_nt2Genome GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAG-TCTCTCACCAAG aaactcgggctggacacatctctccctgttccccacctgattgtccctagGCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGCTCTCTCACCAAGgtgggctctccctaccactattggcctctcacagatcctttaccctttgt Alignment from Pairagon GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAG-TCTCTCACCAAG aaactcgggctggacacatctctccctgttccccacctgattgtccctagGCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGCTCTCTCACCAAGgtgggctctccctaccactattggcctctcacagatcctttaccctttgt Alignment from Exonerate_protein2genome GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAG-TCTCTCACCAAG aaactcgggctggacacatctctccctgttccccacctgattgtccctagGCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGCTCTCTCACCAAGgtgggctctccctaccactattggcctctcacagatcctttaccctttgt Alignment from Exonerate_coding2genome GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAG-TCTCTCACCAAG aaactcgggctggacacatctctccctgttccccacctgattgtccctagGCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGCTCTCTCACCAAGgtgggctctccctaccactattggcctctcacagatcctttaccctttgt Alignment from GeneWise GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAG-TCTCTCACCAAG aaactcgggctggacacatctctccctgttccccacctgattgtccctagGCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGCTCTCTCACCAAGgtgggctctccctaccactattggcctctcacagatcctttaccctttgt #### Sipa1_ID1139_13 --> 2 - 2 Original Alignment gaCAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCT-TTAAAGTGTGATTCTga gccaggaggatgtttattccttcagaccagtccttttctattctccttagggCAACCCATCTCAGAGAGTGGAGATCCCAAGGAAGCTCTTAAAGTGTGATTCTgagtgagttttctgccctaacatacccactcttgtgtttgtgtacttccctg Alignment from CESAR gaCAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCT-TTAAAGTGTGATTCTga gccaggaggatgtttattccttcagaccagtccttttctattctccttagggCAACCCATCTCAGAGAGTGGAGATCCCAAGGAAGCTCTTAAAGTGTGATTCTgagtgagttttctgccctaacatacccactcttgtgtttgtgtacttccctg Alignment from Spaln_aa2Genome GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTA-AAGTGTGATTCTGA gccaggaggatgtttattccttcagaccagtccttttctattctccttagGGCAACCCATCTCAGAGAGTGGAGATCCCAAGGAAGCTCTTaAAGTGTGATTCTGAgtgagttttctgccctaacatacccactcttgtgtttgtgtacttccctg Alignment from Spaln_nt2Genome GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTT-TAAAGTGTGATTCTGA gccaggaggatgtttattccttcagaccagtccttttctattctccttagGGCAACCCATCTCAGAGAGTGGAGATCCCAAGGAAGCTCTTAAAGTGTGATTCTGAgtgagttttctgccctaacatacccactcttgtgtttgtgtacttccctg Alignment from Pairagon GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCT-TTAAAGTGTGATTCTGA gccaggaggatgtttattccttcagaccagtccttttctattctccttagGGCAACCCATCTCAGAGAGTGGAGATCCCAAGGAAGCTCTTAAAGTGTGATTCTGAgtgagttttctgccctaacatacccactcttgtgtttgtgtacttccctg Alignment from Exonerate_protein2genome GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCT-TTAAAGTGTGATTCTGA gccaggaggatgtttattccttcagaccagtccttttctattctccttagGGCAACCCATCTCAGAGAGTGGAGATCCCAAGGAAGCTCTTAAAGTGTGATTCTGAgtgagttttctgccctaacatacccactcttgtgtttgtgtacttccctg Alignment from Exonerate_coding2genome GACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCT-TTAAAGTGTGATTCTGA gccaggaggatgtttattccttcagaccagtccttttctattctccttagGGCAACCCATCTCAGAGAGTGGAGATCCCAAGGAAGCTCTTAAAGTGTGATTCTGAgtgagttttctgccctaacatacccactcttgtgtttgtgtacttccctg Alignment from GeneWise AAGGAAGCTTTAAAGTGTGATTCTGAG-- GCCAGGAGGATGTTTATTCCTTCAGACCAgtccttttctattctccttagggcaacccatctcagagagtggagatcccaaggaagctcttaaagtgtgattctgagtgagttttctgccctaacatacccactcttgtgtttgtgtacttccctg #### Sipa1_ID1140_12 --> 2 - 1 Original Alignment ttATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATC-TCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGg tccctcctcccaaccccaccctccctaatcatgcgctatctcatcctcagttATGCCAGAAGCTGGTAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCCTCAGAGATCACCTCCACTTGCAATACAATTCTGGAGTCACTGTCCCGGGAGggtgagtctgcaagggcccagaggggacgagccaggaggatgtttattcct Alignment from CESAR ttATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATC-TCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGg tccctcctcccaaccccaccctccctaatcatgcgctatctcatcctcagttATGCCAGAAGCTGGTAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCCTCAGAGATCACCTCCACTTGCAATACAATTCTGGAGTCACTGTCCCGGGAGggtgagtctgcaagggcccagaggggacgagccaggaggatgtttattcct Alignment from Spaln_aa2Genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATC-TCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG tccctcctcccaaccccaccctccctaatcatgcgctatctcatcctcagTTATGCCAGAAGCTGGTAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCcTCAGAGATCACCTCCACTTGCAATACAATTCTGGAGTCACTGTCCCGGGAGGgtgagtctgcaagggcccagaggggacgagccaggaggatgtttattcct Alignment from Spaln_nt2Genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCAT-CTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG tccctcctcccaaccccaccctccctaatcatgcgctatctcatcctcagTTATGCCAGAAGCTGGTAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCCTCAGAGATCACCTCCACTTGCAATACAATTCTGGAGTCACTGTCCCGGGAGGgtgagtctgcaagggcccagaggggacgagccaggaggatgtttattcct Alignment from Pairagon TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCAT-CTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG tccctcctcccaaccccaccctccctaatcatgcgctatctcatcctcagTTATGCCAGAAGCTGGTAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCCTCAGAGATCACCTCCACTTGCAATACAATTCTGGAGTCACTGTCCCGGGAGGgtgagtctgcaagggcccagaggggacgagccaggaggatgtttattcct Alignment from Exonerate_protein2genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATC-TCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG tccctcctcccaaccccaccctccctaatcatgcgctatctcatcctcagTTATGCCAGAAGCTGGTAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCCTCAGAGATCACCTCCACTTGCAATACAATTCTGGAGTCACTGTCCCGGGAGGgtgagtctgcaagggcccagaggggacgagccaggaggatgtttattcct Alignment from Exonerate_coding2genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATC-TCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG tccctcctcccaaccccaccctccctaatcatgcgctatctcatcctcagTTATGCCAGAAGCTGGTAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCCTCAGAGATCACCTCCACTTGCAATACAATTCTGGAGTCACTGTCCCGGGAGGgtgagtctgcaagggcccagaggggacgagccaggaggatgtttattcct Alignment from GeneWise TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATC-TCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG tccctcctcccaaccccaccctccctaatcatgcgctatctcatcctcagTTATGCCAGAAGCTGGTAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCCTCAGAGATCACCTCCACTTGCAATACAATTCTGGAGTCACTGTCCCGGGAGGgtgagtctgcaagggcccagaggggacgagccaggaggatgtttattcct #### Sipa1_ID1141_11 --> 0 - 1 Original Alignment GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCA-GGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGa gcagaggtgacattggatgctacaccgtctttttccttttttggccttagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCACGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACTCTGTCTCTGCGGAATTCCATCAGTAAGagtaagtcggagccagggaataggtcaggaggagaagactgcccctacccc Alignment from CESAR GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCA-GGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGa gcagaggtgacattggatgctacaccgtctttttccttttttggccttagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCACGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACTCTGTCTCTGCGGAATTCCATCAGTAAGagtaagtcggagccagggaataggtcaggaggagaagactgcccctacccc Alignment from Spaln_aa2Genome GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCA-GAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gcagaggtgacattggatgctacaccgtctttttccttttttggccttagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCACGGCCCaGAACTGAGGGCCTCCATCCTGCCCAGAACTCTGTCTCTGCGGAATTCCATCAGTAAGAgtaagtcggagccagggaataggtcaggaggagaagactgcccctacccc Alignment from Spaln_nt2Genome GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCA-GGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gcagaggtgacattggatgctacaccgtctttttccttttttggccttagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCACGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACTCTGTCTCTGCGGAATTCCATCAGTAAGAgtaagtcggagccagggaataggtcaggaggagaagactgcccctacccc Alignment from Pairagon GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCA-GGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gcagaggtgacattggatgctacaccgtctttttccttttttggccttagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCACGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACTCTGTCTCTGCGGAATTCCATCAGTAAGAgtaagtcggagccagggaataggtcaggaggagaagactgcccctacccc Alignment from Exonerate_protein2genome GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCA-GGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gcagaggtgacattggatgctacaccgtctttttccttttttggccttagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCACGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACTCTGTCTCTGCGGAATTCCATCAGTAAGAgtaagtcggagccagggaataggtcaggaggagaagactgcccctacccc Alignment from Exonerate_coding2genome GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCA-GGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gcagaggtgacattggatgctacaccgtctttttccttttttggccttagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCACGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACTCTGTCTCTGCGGAATTCCATCAGTAAGAgtaagtcggagccagggaataggtcaggaggagaagactgcccctacccc Alignment from GeneWise GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGAC-TCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gcagaggtgacattggatgctacaccgtctttttccttttttggccttagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCACGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACTCTGTCTCTGCGGAATTCCATCAGTAAGAgtaagtcggagccagggaataggtcaggaggagaagactgcccctacccc #### Sipa1_ID1142_10 --> 1 - 0 Original Alignment cTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCC-AACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG tagctgtggaaaagcagctctccgttctgtaacacattgtgcctttgcagcTCCCTGTCCGATGAGGCCCCAGTCCTGCCCAACACCACGCCAGACCTCCTCCTTGTCACCACTGCCCAACCCATCTGCGCCTGATACTGACAGAGAAACACCCCCTTCCCAGgtgagttgcagaggtgacattggatgctacaccgtctctccctttttatt Alignment from CESAR cTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCC-AACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG tagctgtggaaaagcagctctccgttctgtaacacattgtgcctttgcagcTCCCTGTCCGATGAGGCCCCAGTCCTGCCCAACACCACGCCAGACCTCCTCCTTGTCACCACTGCCCAACCCATCTGCGCCTGATACTGACAGAGAAACACCCCCTTCCCAGgtgagttgcagaggtgacattggatgctacaccgtctttttccttttttg Alignment from Spaln_aa2Genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCC-AACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG tagctgtggaaaagcagctctccgttctgtaacacattgtgcctttgcagCTCCCTGTCCGATGAGGCCCCAGTCCTGCCCAACACCACGCCAGACCTCCTCCTTGTCACCACTGCCcAACCCATCTGCGCCTGATACTGACAGAGAAACACCCCCTTCCCAGgtgagttgcagaggtgacattggatgctacaccgtctctccctttttatt Alignment from Spaln_nt2Genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTG-CCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG tagctgtggaaaagcagctctccgttctgtaacacattgtgcctttgcagCTCCCTGTCCGATGAGGCCCCAGTCCTGCCCAACACCACGCCAGACCTCCTCCTTGTCACCACTGCCCAACCCATCTGCGCCTGATACTGACAGAGAAACACCCCCTTCCCAGgtgagttgcagaggtgacattggatgctacaccgtctctccctttttatt Alignment from Pairagon CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTG-CCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG tagctgtggaaaagcagctctccgttctgtaacacattgtgcctttgcagCTCCCTGTCCGATGAGGCCCCAGTCCTGCCCAACACCACGCCAGACCTCCTCCTTGTCACCACTGCCCAACCCATCTGCGCCTGATACTGACAGAGAAACACCCCCTTCCCAGgtgagttgcagaggtgacattggatgctacaccgtctctccctttttatt Alignment from Exonerate_protein2genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCC-AACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG tagctgtggaaaagcagctctccgttctgtaacacattgtgcctttgcagCTCCCTGTCCGATGAGGCCCCAGTCCTGCCCAACACCACGCCAGACCTCCTCCTTGTCACCACTGCCCAACCCATCTGCGCCTGATACTGACAGAGAAACACCCCCTTCCCAGgtgagttgcagaggtgacattggatgctacaccgtctctccctttttatt Alignment from Exonerate_coding2genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCC-AACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG tagctgtggaaaagcagctctccgttctgtaacacattgtgcctttgcagCTCCCTGTCCGATGAGGCCCCAGTCCTGCCCAACACCACGCCAGACCTCCTCCTTGTCACCACTGCCCAACCCATCTGCGCCTGATACTGACAGAGAAACACCCCCTTCCCAGgtgagttgcagaggtgacattggatgctacaccgtctctccctttttatt Alignment from GeneWise CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACT-GCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCT-------------------------------------------------------- tagctgtggaaaagcagctctccgttctgtaacacattgtgcctttgcagCTCCCTGTCCGATGAGGCCCCAGTCCTGCCCAACACCACGCCAGACCTCCTCCTTGTCACCACTGCCCAACCCATCTGCGCCTGATACTGACAGAGAAACACCCCCTTCCCAGGTGAGTTGCAGAGGTGACATTGGATGCTACACCGTCTCTCCCTTTTTATT #### Sipa1_ID1147_5 --> 2 - 0 Original Alignment cgGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATG-CTGCCTTACACGCCTAATAACCAGCAACAG tccccatgtccacattctcttctctttgaccggctgttttcctccctcagcgGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATGCCTGCCTTACACGCCTAATAACCAGCAACAGgtaagagaagagcttgaggagccgagccaggccaaagactattgggaagc Alignment from CESAR cgGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATG-CTGCCTTACACGCCTAATAACCAGCAACAG tccccatgtccacattctcttctctttgaccggctgttttcctccctcagcgGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATGCCTGCCTTACACGCCTAATAACCAGCAACAGgtaagagaagagcttgaggagccgagccaggccaaagactattgggaagc Alignment from Spaln_aa2Genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATG-CTGCCTTACACGCCTAATAACCAGCAACAG tccccatgtccacattctcttctctttgaccggctgttttcctccctcagCGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATGcCTGCCTTACACGCCTAATAACCAGCAACAGgtaagagaagagcttgaggagccgagccaggccaaagactattgggaagc Alignment from Spaln_nt2Genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATG-CTGCCTTACACGCCTAATAACCAGCAACAG tccccatgtccacattctcttctctttgaccggctgttttcctccctcagCGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATGCCTGCCTTACACGCCTAATAACCAGCAACAGgtaagagaagagcttgaggagccgagccaggccaaagactattgggaagc Alignment from Pairagon CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATG-CTGCCTTACACGCCTAATAACCAGCAACAG tccccatgtccacattctcttctctttgaccggctgttttcctccctcagCGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATGCCTGCCTTACACGCCTAATAACCAGCAACAGgtaagagaagagcttgaggagccgagccaggccaaagactattgggaagc Alignment from Exonerate_protein2genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATG-CTGCCTTACACGCCTAATAACCAGCAACAG tccccatgtccacattctcttctctttgaccggctgttttcctccctcagCGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATGCCTGCCTTACACGCCTAATAACCAGCAACAGgtaagagaagagcttgaggagccgagccaggccaaagactattgggaagc Alignment from Exonerate_coding2genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATG-CTGCCTTACACGCCTAATAACCAGCAACAG tccccatgtccacattctcttctctttgaccggctgttttcctccctcagCGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATGCCTGCCTTACACGCCTAATAACCAGCAACAGgtaagagaagagcttgaggagccgagccaggccaaagactattgggaagc Alignment from GeneWise CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATG-CTGCCTTACACGCCTAATAACCAGCAACAG tccccatgtccacattctcttctctttgaccggctgttttcctccctcagCGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACGATGCCTGCCTTACACGCCTAATAACCAGCAACAGgtaagagaagagcttgaggagccgagccaggccaaagactattgggaagc #### Sipa1_ID1150_2 --> 2 - 0 Original Alignment aaCACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGG-GGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG gaaatgccactcaccaaccaaccaacaacactgctctgtttaatttccagaaCATCAGAACTTCTTTGGGCTGGATGAGGCACTGGGTCCAGTGGCTGTGAGCCTGCAACGGGAGGAGAAAGAGGGCAGTGGAGGGCGCCACCCTACACAGCTACCGGGTCATTGTGCGGACCACGCAGgtgggtagggattacaggccaccacagcctatactaaaggtgaatgtctt Alignment from CESAR aaCACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGG-GGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG gaaatgccactcaccaaccaaccaacaacactgctctgtttaatttccagaaCATCAGAACTTCTTTGGGCTGGATGAGGCACTGGGTCCAGTGGCTGTGAGCCTGCAACGGGAGGAGAAAGAGGGCAGTGGAGGGCGCCACCCTACACAGCTACCGGGTCATTGTGCGGACCACGCAGgtgggtagggattacaggccaccacagcctatactaaaggtgaaaatgat Alignment from Spaln_aa2Genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGG-GGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG gaaatgccactcaccaaccaaccaacaacactgctctgtttaatttccagAACATCAGAACTTCTTTGGGCTGGATGAGGCACTGGGTCCAGTGGCTGTGAGCCTGCAACGGGAGGAGAAAGAGGGCAGTGGAGGGcGCCACCCTACACAGCTACCGGGTCATTGTGCGGACCACGCAGgtgggtagggattacaggccaccacagcctatactaaaggtgaatgtctt Alignment from Spaln_nt2Genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGC-ACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG gaaatgccactcaccaaccaaccaacaacactgctctgtttaatttccagAACATCAGAACTTCTTTGGGCTGGATGAGGCACTGGGTCCAGTGGCTGTGAGCCTGCAACGGGAGGAGAAAGAGGGCAGTGGAGGGCGCCACCCTACACAGCTACCGGGTCATTGTGCGGACCACGCAGgtgggtagggattacaggccaccacagcctatactaaaggtgaatgtctt Alignment from Pairagon AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGG-GGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG gaaatgccactcaccaaccaaccaacaacactgctctgtttaatttccagAACATCAGAACTTCTTTGGGCTGGATGAGGCACTGGGTCCAGTGGCTGTGAGCCTGCAACGGGAGGAGAAAGAGGGCAGTGGAGGGCGCCACCCTACACAGCTACCGGGTCATTGTGCGGACCACGCAGgtgggtagggattacaggccaccacagcctatactaaaggtgaatgtctt Alignment from Exonerate_protein2genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGA-GGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG gaaatgccactcaccaaccaaccaacaacactgctctgtttaatttccagAACATCAGAACTTCTTTGGGCTGGATGAGGCACTGGGTCCAGTGGCTGTGAGCCTGCAACGGGAGGAGAAAGAGGGCAGTGGAGGGCGCCACCCTACACAGCTACCGGGTCATTGTGCGGACCACGCAGgtgggtagggattacaggccaccacagcctatactaaaggtgaatgtctt Alignment from Exonerate_coding2genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGA-GGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG gaaatgccactcaccaaccaaccaacaacactgctctgtttaatttccagAACATCAGAACTTCTTTGGGCTGGATGAGGCACTGGGTCCAGTGGCTGTGAGCCTGCAACGGGAGGAGAAAGAGGGCAGTGGAGGGCGCCACCCTACACAGCTACCGGGTCATTGTGCGGACCACGCAGgtgggtagggattacaggccaccacagcctatactaaaggtgaatgtctt Alignment from GeneWise AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGG-GGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG gaaatgccactcaccaaccaaccaacaacactgctctgtttaatttccagAACATCAGAACTTCTTTGGGCTGGATGAGGCACTGGGTCCAGTGGCTGTGAGCCTGCAACGGGAGGAGAAAGAGGGCAGTGGAGGGCGCCACCCTACACAGCTACCGGGTCATTGTGCGGACCACGCAGgtgggtagggattacaggccaccacagcctatactaaaggtgaatgtctt #### Slc18a2_ID12940_8 --> 0 - 1 Original Alignment AGTCAGAAGGGG-ACACCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAg cccaagaccgacccaggcaagtttttctctgacatctctccttctccaagAGTCAGAAGGGGCACACCTCTTACGACCTTACTGAAGGACCCGTACATTCTCATCGCTGCAggtaagaagcccttaatttattgaaggtaagggtagttctaaagggataga Alignment from CESAR AGTCAGAAGGGG-ACACCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAg cccaagaccgacccaggcaagtttttctctgacatctctccttctccaagAGTCAGAAGGGGCACACCTCTTACGACCTTACTGAAGGACCCGTACATTCTCATCGCTGCAggtaagaagcccttaatttattgaaggtaagggtagttctaaagggataga Alignment from Spaln_aa2Genome -AAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAG cccaagaccgacccaggcaagtttttctctgacatctctccttctccaagagtcagAAGGGGCACACCTCTTACGACCTTACTGAAGGACCCGTACATTCTCATCGCTGCAGgtaagaagcccttaatttattgaaggtaagggtagttctaaagggataga Alignment from Spaln_nt2Genome AGTCAGAAGGGG-ACACCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAG cccaagaccgacccaggcaagtttttctctgacatctctccttctccaagAGTCAGAAGGGGCACACCTCTTACGACCTTACTGAAGGACCCGTACATTCTCATCGCTGCAGgtaagaagcccttaatttattgaaggtaagggtagttctaaagggataga Alignment from Pairagon AGTCAGAAGGGG-ACACCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAG cccaagaccgacccaggcaagtttttctctgacatctctccttctccaagAGTCAGAAGGGGCACACCTCTTACGACCTTACTGAAGGACCCGTACATTCTCATCGCTGCAGgtaagaagcccttaatttattgaaggtaagggtagttctaaagggataga Alignment from Exonerate_protein2genome GTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAG cccaagaccgacccaggcaagtttttctctgacatctctccttctccaagagTCAGAAGGGGCACACCTCTTACGACCTTACTGAAGGACCCGTACATTCTCATCGCTGCAGgtaagaagcccttaatttattgaaggtaagggtagttctaaagggataga Alignment from Exonerate_coding2genome AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAG cccaagaccgacccaggcaagtttttctctgacatctctccttctccaagagT-CAGAAGGGGCACACCTCTTACGACCTTACTGAAGGACCCGTACATTCTCATCGCTGCAGgtaagaagcccttaatttattgaaggtaagggtagttctaaagggataga Alignment from GeneWise CTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAAAGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAG gacccagGCAAGTTTTTCTCTGACATCTCTCCTTCT---------CCAAGAGTCAGAAGGGGCACACCTCTTACGACCTTACTGAAGGACCCGTACATTCTCATCGCTGCAGgtaagaagcccttaatttattgaaggtaagggtagttctaaagggataga #### Slc22a12_ID1789_8 --> 2 - 2 Original Alignment ggATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGC-CTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCag aggacagggaatatcgcaccccacactgctgttgctcctcacgttcctagggATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGTTGGGCTGCCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCTAGTGAACTCTTCCCCACTGTGATCaggtaagactgtcattggctcaaggagcgcactccagcctagtgaaaagctg Alignment from CESAR ggATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGC-CTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCag aggacagggaatatcgcaccccacactgctgttgctcctcacgttcctagggATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGTTGGGCTGCCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCTAGTGAACTCTTCCCCACTGTGATCaggtaagactgtcattggctcaaggagcgcactccagcctagtgaaaagctg Alignment from Spaln_aa2Genome GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGC-CTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG aggacagggaatatcgcaccccacactgctgttgctcctcacgttcctagGGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGTTGGGCTGCcCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCTAGTGAACTCTTCCCCACTGTGATCAGgtaagactgtcattggctcaaggagcgcactccagcctagtgaaaagctg Alignment from Spaln_nt2Genome GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTG-CCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG aggacagggaatatcgcaccccacactgctgttgctcctcacgttcctagGGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGTTGGGCTGCCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCTAGTGAACTCTTCCCCACTGTGATCAGgtaagactgtcattggctcaaggagcgcactccagcctagtgaaaagctg Alignment from Pairagon GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTG-CCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG aggacagggaatatcgcaccccacactgctgttgctcctcacgttcctagGGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGTTGGGCTGCCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCTAGTGAACTCTTCCCCACTGTGATCAGgtaagactgtcattggctcaaggagcgcactccagcctagtgaaaagctg Alignment from Exonerate_protein2genome GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGC-CTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG aggacagggaatatcgcaccccacactgctgttgctcctcacgttcctagGGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGTTGGGCTGCCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCTAGTGAACTCTTCCCCACTGTGATCAGgtaagactgtcattggctcaaggagcgcactccagcctagtgaaaagctg Alignment from Exonerate_coding2genome GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGC-CTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG aggacagggaatatcgcaccccacactgctgttgctcctcacgttcctagGGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGTTGGGCTGCCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCTAGTGAACTCTTCCCCACTGTGATCAGgtaagactgtcattggctcaaggagcgcactccagcctagtgaaaagctg Alignment from GeneWise GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGC-CTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG aggacagggaatatcgcaccccacactgctgttgctcctcacgttcctagGGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGTTGGGCTGCCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCTAGTGAACTCTTCCCCACTGTGATCAGgtaagactgtcattggctcaaggagcgcactccagcctagtgaaaagctg #### Slc22a20_ID1351_2 --> 0 - 2 Original Alignment TGGGACCTGGTGTGTGAGGCCCGC-ACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACag ggacaagccaagcctagggacaaggtttttcattccttttgtctttacagTGGGACCTGGTGTGTGAGGCCCGCCACCCTTCGTGACCTGGCTCAATCTATCTACATGTCTGGAGTGTTGGTGGGAGCTGCCTTGTTTGGTTGTCTAGCTGACaggtgagtcttttggggagcacctcgtcccccagggaaagcccttgcgttca Alignment from CESAR TGGGACCTGGTGTGTGAGGCCCGC-ACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACag ggacaagccaagcctagggacaaggtttttcattccttttgtctttacagTGGGACCTGGTGTGTGAGGCCCGCCACCCTTCGTGACCTGGCTCAATCTATCTACATGTCTGGAGTGTTGGTGGGAGCTGCCTTGTTTGGTTGTCTAGCTGACaggtgagtcttttggggagcacctcgtcccccagggaaagcccttgcgttca Alignment from Spaln_aa2Genome TGGGACCTGGTGTGTGAGGCCCGC-ACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG ggacaagccaagcctagggacaaggtttttcattccttttgtctttacagTGGGACCTGGTGTGTGAGGCCCGCcACCCTTCGTGACCTGGCTCAATCTATCTACATGTCTGGAGTGTTGGTGGGAGCTGCCTTGTTTGGTTGTCTAGCTGACAGgtgagtcttttggggagcacctcgtcccccagggaaagcccttgcgttca Alignment from Spaln_nt2Genome AGTGGGACCTGGTGTGTGAGG-CCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG ggacaagccaagcctagggacaaggtttttcattccttttgtctttacAGTGGGACCTGGTGTGTGAGGCCCGCCACCCTTCGTGACCTGGCTCAATCTATCTACATGTCTGGAGTGTTGGTGGGAGCTGCCTTGTTTGGTTGTCTAGCTGACAGgtgagtcttttggggagcacctcgtcccccagggaaagcccttgcgttca Alignment from Pairagon TGGGACCTGGTGTGTGAGGCCCG-CACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG ggacaagccaagcctagggacaaggtttttcattccttttgtctttacagTGGGACCTGGTGTGTGAGGCCCGCCACCCTTCGTGACCTGGCTCAATCTATCTACATGTCTGGAGTGTTGGTGGGAGCTGCCTTGTTTGGTTGTCTAGCTGACAGgtgagtcttttggggagcacctcgtcccccagggaaagcccttgcgttca Alignment from Exonerate_protein2genome TGGGACCTGGTGTGTGAGGCCCGC-ACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG ggacaagccaagcctagggacaaggtttttcattccttttgtctttacagTGGGACCTGGTGTGTGAGGCCCGCCACCCTTCGTGACCTGGCTCAATCTATCTACATGTCTGGAGTGTTGGTGGGAGCTGCCTTGTTTGGTTGTCTAGCTGACAGgtgagtcttttggggagcacctcgtcccccagggaaagcccttgcgttca Alignment from Exonerate_coding2genome TGGGACCTGGTGTGTGAGGCCCGC-ACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG ggacaagccaagcctagggacaaggtttttcattccttttgtctttacagTGGGACCTGGTGTGTGAGGCCCGCCACCCTTCGTGACCTGGCTCAATCTATCTACATGTCTGGAGTGTTGGTGGGAGCTGCCTTGTTTGGTTGTCTAGCTGACAGgtgagtcttttggggagcacctcgtcccccagggaaagcccttgcgttca Alignment from GeneWise TGGGACCTGGTGTGTGAGGCCCGC-ACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG ggacaagccaagcctagggacaaggtttttcattccttttgtctttacagTGGGACCTGGTGTGTGAGGCCCGCCACCCTTCGTGACCTGGCTCAATCTATCTACATGTCTGGAGTGTTGGTGGGAGCTGCCTTGTTTGGTTGTCTAGCTGACAGgtgagtcttttggggagcacctcgtcccccagggaaagcccttgcgttca #### Slc22a26_ID2221_4 --> 2 - 2 Original Alignment tgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACA-CTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAag aggtccttccctttgtttttagcagtcaaccccctgctttctgtgcacagtgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACCTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAaggtatggacttttgtttctcctctgtattttgaaattgtggggtaaccata Alignment from CESAR tgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACA-CTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAag aggtccttccctttgtttttagcagtcaaccccctgctttctgtgcacagtgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACCTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAaggtatggacttttgtttctcctctgtattttgaaattgtggggtaaccata Alignment from Spaln_aa2Genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACA-CTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG aggtccttccctttgtttttagcagtcaaccccctgctttctgtgcacagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACAcCTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAGgtatggacttttgtttctcctctgtattttgaaattgtggggtaaccata Alignment from Spaln_nt2Genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACA-CTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG aggtccttccctttgtttttagcagtcaaccccctgctttctgtgcacagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACCTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAGgtatggacttttgtttctcctctgtattttgaaattgtggggtaaccata Alignment from Pairagon TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACA-CTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG aggtccttccctttgtttttagcagtcaaccccctgctttctgtgcacagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACCTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAGgtatggacttttgtttctcctctgtattttgaaattgtggggtaaccata Alignment from Exonerate_protein2genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACA-CTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG aggtccttccctttgtttttagcagtcaaccccctgctttctgtgcacagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACCTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAGgtatggacttttgtttctcctctgtattttgaaattgtggggtaaccata Alignment from Exonerate_coding2genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACT---GTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG aggtccttccctttgtttttagcagtcaaccccctgctttctgtgcacagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACC--ACACCTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAGgtatggacttttgtttctcctctgtattttgaaattgtggggtaaccata Alignment from GeneWise TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACA-CTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG aggtccttccctttgtttttagcagtcaaccccctgctttctgtgcacagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACCTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTGGCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAGgtatggacttttgtttctcctctgtattttgaaattgtggggtaaccata #### Slc22a6_ID2284_5 --> 1 - 0 Original Alignment gTTCTTCATTGAGTCAGCCCGC-TGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG tgaaactgagaccacaccaacatctgcctttatgatgctgttgtttttaggTTCTTCATTGAGTCAGCCCGCCTGGTACTCCTCCTCTGGTAGGCTGGACCTCACCCTCCGAGCCCTCCAGAGAGTGGCCTGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGTGTATAGAGgtaagttttgtttgttcctagacaccgcctgaactccaacccaagtccca Alignment from CESAR gTTCTTCATTGAGTCAGCCCGC-TGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG tgaaactgagaccacaccaacatctgcctttatgatgctgttgtttttaggTTCTTCATTGAGTCAGCCCGCCTGGTACTCCTCCTCTGGTAGGCTGGACCTCACCCTCCGAGCCCTCCAGAGAGTGGCCTGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGTGTATAGAGgtaagttttgtttgttcctagacaccgcctgaactccaacccaagtccca Alignment from Spaln_aa2Genome GTTCTTCATTGAGTCAGCCCGC-TGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG tgaaactgagaccacaccaacatctgcctttatgatgctgttgtttttagGTTCTTCATTGAGTCAGCCCGCcTGGTACTCCTCCTCTGGTAGGCTGGACCTCACCCTCCGAGCCCTCCAGAGAGTGGCCTGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGTGTATAGAGgtaagttttgtttgttcctagacaccgcctgaactccaacccaagtccca Alignment from Spaln_nt2Genome GTTCTTCATTGAGTCAG-CCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG tgaaactgagaccacaccaacatctgcctttatgatgctgttgtttttagGTTCTTCATTGAGTCAGCCCGCCTGGTACTCCTCCTCTGGTAGGCTGGACCTCACCCTCCGAGCCCTCCAGAGAGTGGCCTGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGTGTATAGAGgtaagttttgtttgttcctagacaccgcctgaactccaacccaagtccca Alignment from Pairagon GTTCTTCATTGAGTCAGCCCG-CTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG tgaaactgagaccacaccaacatctgcctttatgatgctgttgtttttagGTTCTTCATTGAGTCAGCCCGCCTGGTACTCCTCCTCTGGTAGGCTGGACCTCACCCTCCGAGCCCTCCAGAGAGTGGCCTGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGTGTATAGAGgtaagttttgtttgttcctagacaccgcctgaactccaacccaagtccca Alignment from Exonerate_protein2genome GTTCTTCATTGAGTCAGCCCGC-TGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG tgaaactgagaccacaccaacatctgcctttatgatgctgttgtttttagGTTCTTCATTGAGTCAGCCCGCCTGGTACTCCTCCTCTGGTAGGCTGGACCTCACCCTCCGAGCCCTCCAGAGAGTGGCCTGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGTGTATAGAGgtaagttttgtttgttcctagacaccgcctgaactccaacccaagtccca Alignment from Exonerate_coding2genome GTTCTTCATTGAGTCAGCCCG-CTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG tgaaactgagaccacaccaacatctgcctttatgatgctgttgtttttagGTTCTTCATTGAGTCAGCCCGCCTGGTACTCCTCCTCTGGTAGGCTGGACCTCACCCTCCGAGCCCTCCAGAGAGTGGCCTGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGTGTATAGAGgtaagttttgtttgttcctagacaccgcctgaactccaacccaagtccca Alignment from GeneWise GTTCTTCATTGAGTCAGCC-CGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGAGTATAGAG tgaaactgagaccacaccaacatctgcctttatgatgctgttgtttttagGTTCTTCATTGAGTCAGCCCGCCTGGTACTCCTCCTCTGGTAGGCTGGACCTCACCCTCCGAGCCCTCCAGAGAGTGGCCTGCATCAACGGGAAACAAGAAGAGGGGGCTAAGCTGTGTATAGAGgtaagttttgtttgttcctagacaccgcctgaactccaacccaagtccca #### Slc22a8_ID2275_8 --> 2 - 2 Original Alignment aaATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTAC-CCTACAGTCCTCag tgaggggcttatgaaaaccatggcccataagcctactcctatacttttagaaATGCAGCTTGTGAGGACAGCACTGGCTGTATTTGGTAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCCTACAGTCCTCaggtgaatgatgcacctgggtcaggggttcacacacagaactgaattttcca Alignment from CESAR aaATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTAC-CCTACAGTCCTCag tgaggggcttatgaaaaccatggcccataagcctactcctatacttttagaaATGCAGCTTGTGAGGACAGCACTGGCTGTATTTGGTAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCCTACAGTCCTCaggtgaatgatgcacctgggtcaggggttcacacacagaactgaattttcca Alignment from Spaln_aa2Genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCT-ACAGTCCTCAG tgaggggcttatgaaaaccatggcccataagcctactcctatacttttagAAATGCAGCTTGTGAGGACAGCACTGGCTGTATTTGGTAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCCtACAGTCCTCAGgtgaatgatgcacctgggtcaggggttcacacacagaactgaattttcca Alignment from Spaln_nt2Genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCC-TACAGTCCTCAG tgaggggcttatgaaaaccatggcccataagcctactcctatacttttagAAATGCAGCTTGTGAGGACAGCACTGGCTGTATTTGGTAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCCTACAGTCCTCAGgtgaatgatgcacctgggtcaggggttcacacacagaactgaattttcca Alignment from Pairagon AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTA-CCCTACAGTCCTCAG tgaggggcttatgaaaaccatggcccataagcctactcctatacttttagAAATGCAGCTTGTGAGGACAGCACTGGCTGTATTTGGTAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCCTACAGTCCTCAGgtgaatgatgcacctgggtcaggggttcacacacagaactgaattttcca Alignment from Exonerate_protein2genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTAC-CCTACAGTCCTCAG tgaggggcttatgaaaaccatggcccataagcctactcctatacttttagAAATGCAGCTTGTGAGGACAGCACTGGCTGTATTTGGTAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCCTACAGTCCTCAGgtgaatgatgcacctgggtcaggggttcacacacagaactgaattttcca Alignment from Exonerate_coding2genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTAC-CCTACAGTCCTCAG tgaggggcttatgaaaaccatggcccataagcctactcctatacttttagAAATGCAGCTTGTGAGGACAGCACTGGCTGTATTTGGTAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCCTACAGTCCTCAGgtgaatgatgcacctgggtcaggggttcacacacagaactgaattttcca Alignment from GeneWise AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACA- tgaggggcttatgaaaaccatggcccataagcctactcctatacttttagAAATGCAGCTTGTGAGGACAGCACTGGCTGTATTTGGTAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCCTACAgtcctcaggtgaatgatgcacctgggtcaggggttcacacacagaactgaattttcca #### Slc25a45_ID1292_3 --> 0 - 0 Original Alignment GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTC-AAGACTTACCGCCATGAGTCA tgccattgtaggagcagccctggcttgcgtctggttgtgtgctctgccagGTGCGGTTACAGACCCAAAGCACATACCAGGGCATTGTGGACTGTGTAGCCCAAGACATACCGCCATGAGTCAgtaagtagcccacttgttggcggtaaagagtcatcagagcaggtggggtc Alignment from CESAR GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTC-AAGACTTACCGCCATGAGTCA tgccattgtaggagcagccctggcttgcgtctggttgtgtgctctgccagGTGCGGTTACAGACCCAAAGCACATACCAGGGCATTGTGGACTGTGTAGCCCAAGACATACCGCCATGAGTCAgtaagtagcccacttgttggcggtaaagagtcatcagagcaggtggggtc Alignment from Spaln_aa2Genome GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTC-AAGACTTACCGCCATGAGTCA tgccattgtaggagcagccctggcttgcgtctggttgtgtgctctgccagGTGCGGTTACAGACCCAAAGCACATACCAGGGCATTGTGGACTGTGTAGCCcAAGACATACCGCCATGAGTCAgtaagtagcccacttgttggcggtaaagagtcatcagagcaggtggggtc Alignment from Spaln_nt2Genome GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTC-AAGACTTACCGCCATGAGTCA tgccattgtaggagcagccctggcttgcgtctggttgtgtgctctgccagGTGCGGTTACAGACCCAAAGCACATACCAGGGCATTGTGGACTGTGTAGCCCAAGACATACCGCCATGAGTCAgtaagtagcccacttgttggcggtaaagagtcatcagagcaggtggggtc Alignment from Pairagon GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAG-TCAAGACTTACCGCCATGAGTCA tgccattgtaggagcagccctggcttgcgtctggttgtgtgctctgccagGTGCGGTTACAGACCCAAAGCACATACCAGGGCATTGTGGACTGTGTAGCCCAAGACATACCGCCATGAGTCAgtaagtagcccacttgttggcggtaaagagtcatcagagcaggtggggtc Alignment from Exonerate_protein2genome GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTC-AAGACTTACCGCCATGAGTCA tgccattgtaggagcagccctggcttgcgtctggttgtgtgctctgccagGTGCGGTTACAGACCCAAAGCACATACCAGGGCATTGTGGACTGTGTAGCCCAAGACATACCGCCATGAGTCAgtaagtagcccacttgttggcggtaaagagtcatcagagcaggtggggtc Alignment from Exonerate_coding2genome GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTC-AAGACTTACCGCCATGAGTCA tgccattgtaggagcagccctggcttgcgtctggttgtgtgctctgccagGTGCGGTTACAGACCCAAAGCACATACCAGGGCATTGTGGACTGTGTAGCCCAAGACATACCGCCATGAGTCAgtaagtagcccacttgttggcggtaaagagtcatcagagcaggtggggtc Alignment from GeneWise GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTA-GTCAAGACTTACCGCCATGAGTCA tgccattgtaggagcagccctggcttgcgtctggttgtgtgctctgccagGTGCGGTTACAGACCCAAAGCACATACCAGGGCATTGTGGACTGTGTAGCCCAAGACATACCGCCATGAGTCAgtaagtagcccacttgttggcggtaaagagtcatcagagcaggtggggtc #### Slc29a2_ID790_4 --> 1 - 1 Original Alignment cATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATACTACTGCTCTTT-GCCCTGACAGCAGCGTTGGTGAAGGTGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCCGTCTGGTTCATCAATt ggcatctgctcctggtggcctcctgatgtacgcactgcctctccccacagcATCCCTGAATCGGTGCAGATTCTGGGTAGCCTGCTCGCCATACTACTACTGTTTCGCCCTGACAGCAGCCTTGGTGAAGGAGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCTGTCTGGTTCATCAATtgtatgtacataccccagcccaatctccagtgcagcaacaaccgagcagat Alignment from CESAR cATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATACTACTGCTCTTT-GCCCTGACAGCAGCGTTGGTGAAGGTGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCCGTCTGGTTCATCAATt ggcatctgctcctggtggcctcctgatgtacgcactgcctctccccacagcATCCCTGAATCGGTGCAGATTCTGGGTAGCCTGCTCGCCATACTACTACTGTTTCGCCCTGACAGCAGCCTTGGTGAAGGAGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCTGTCTGGTTCATCAATtgtatgtacataccccagcccaatctccagtgcagcaacaaccgagcagat Alignment from Spaln_aa2Genome CATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATACTACTGCTC-TTTGCCCTGACAGCAGCGTTGGTGAAGGTGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCCGTCTGGTTCATCAATT ggcatctgctcctggtggcctcctgatgtacgcactgcctctccccacagCATCCCTGAATCGGTGCAGATTCTGGGTAGCCTGCTCGCCATACTACTACTGtTTCGCCCTGACAGCAGCCTTGGTGAAGGAGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCTGTCTGGTTCATCAATTgtatgtacataccccagcccaatctccagtgcagcaacaaccgagcagat Alignment from Spaln_nt2Genome CATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATACTACTGCTCTTT-GCCCTGACAGCAGCGTTGGTGAAGGTGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCCGTCTGGTTCATCAATT ggcatctgctcctggtggcctcctgatgtacgcactgcctctccccacagCATCCCTGAATCGGTGCAGATTCTGGGTAGCCTGCTCGCCATACTACTACTGTTTCGCCCTGACAGCAGCCTTGGTGAAGGAGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCTGTCTGGTTCATCAATTgtatgtacataccccagcccaatctccagtgcagcaacaaccgagcagat Alignment from Pairagon CATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATACTACTGCTCTTT-GCCCTGACAGCAGCGTTGGTGAAGGTGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCCGTCTGGTTCATCAATT ggcatctgctcctggtggcctcctgatgtacgcactgcctctccccacagCATCCCTGAATCGGTGCAGATTCTGGGTAGCCTGCTCGCCATACTACTACTGTTTCGCCCTGACAGCAGCCTTGGTGAAGGAGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCTGTCTGGTTCATCAATTgtatgtacataccccagcccaatctccagtgcagcaacaaccgagcagat Alignment from Exonerate_protein2genome CATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATACTACTGCTC-TTTGCCCTGACAGCAGCGTTGGTGAAGGTGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCCGTCTGGTTCATCAATT ggcatctgctcctggtggcctcctgatgtacgcactgcctctccccacagCATCCCTGAATCGGTGCAGATTCTGGGTAGCCTGCTCGCCATACTACTACTGTTTCGCCCTGACAGCAGCCTTGGTGAAGGAGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCTGTCTGGTTCATCAATTgtatgtacataccccagcccaatctccagtgcagcaacaaccgagcagat Alignment from Exonerate_coding2genome CATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATACTACTGCTC-TTTGCCCTGACAGCAGCGTTGGTGAAGGTGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCCGTCTGGTTCATCAATT ggcatctgctcctggtggcctcctgatgtacgcactgcctctccccacagCATCCCTGAATCGGTGCAGATTCTGGGTAGCCTGCTCGCCATACTACTACTGTTTCGCCCTGACAGCAGCCTTGGTGAAGGAGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCTGTCTGGTTCATCAATTgtatgtacataccccagcccaatctccagtgcagcaacaaccgagcagat Alignment from GeneWise CATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATACTACTGCTCTTT-GCCCTGACAGCAGCGTTGGTGAAGGTGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCCGTCTGGTTCATCAATT ggcatctgctcctggtggcctcctgatgtacgcactgcctctccccacagCATCCCTGAATCGGTGCAGATTCTGGGTAGCCTGCTCGCCATACTACTACTGTTTCGCCCTGACAGCAGCCTTGGTGAAGGAGGACTTGAGCCCTGGGCTGTTCTTCTCTGTCACCATGGCGTCTGTCTGGTTCATCAATTgtatgtacataccccagcccaatctccagtgcagcaacaaccgagcagat #### Slc29a2_ID791_5 --> 2 - 1 Original Alignment ccTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTC-ATGTCCTTGGCCa cctcttggtgtggctgtctaagtgttggaattcccttggttctctggtagccTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGCGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCCATGTCTTTGGCCagtgagtgcacctgggggtctgaagagctggctagaaaaagcagatacagg Alignment from CESAR ccTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTC-ATGTCCTTGGCCa cctcttggtgtggctgtctaagtgttggaattcccttggttctctggtagccTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGCGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCCATGTCTTTGGCCagtgagtgcacctgggggtctgaagagctggctagaaaaagcagatacagg Alignment from Spaln_aa2Genome CCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTG- cctcttggtgtggctgtctaagtgttggaattcccttggttctctggtagCCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGCGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCCATGTCTTTGgccagtgagtgcacctgggggtctgaagagctggctagaaaaagcagatacagg Alignment from Spaln_nt2Genome CCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTC-ATGTCCTTGGCCA cctcttggtgtggctgtctaagtgttggaattcccttggttctctggtagCCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGCGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCCATGTCTTTGGCCAgtgagtgcacctgggggtctgaagagctggctagaaaaagcagatacagg Alignment from Pairagon CCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCT-CATGTCCTTGGCCA cctcttggtgtggctgtctaagtgttggaattcccttggttctctggtagCCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGCGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCCATGTCTTTGGCCAgtgagtgcacctgggggtctgaagagctggctagaaaaagcagatacagg Alignment from Exonerate_protein2genome CCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTC-ATGTCCTTGGCCA cctcttggtgtggctgtctaagtgttggaattcccttggttctctggtagCCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGCGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCCATGTCTTTGGCCAgtgagtgcacctgggggtctgaagagctggctagaaaaagcagatacagg Alignment from Exonerate_coding2genome CCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTC-ATGTCCTTGGCCA cctcttggtgtggctgtctaagtgttggaattcccttggttctctggtagCCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGCGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCCATGTCTTTGGCCAgtgagtgcacctgggggtctgaagagctggctagaaaaagcagatacagg Alignment from GeneWise CCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATG cctcttggtgtggctgtctaagtgttggaattcccttggttctctggtagCCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGCGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCCATgtctttggccagtgagtgcacctgggggtctgaagagctggctagaaaaagcagatacagg #### Slc29a2_ID792_6 --> 2 - 0 Original Alignment gtGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGT-GTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gcagcactaggagacttgtatctccttgtattgtcaacttttctctccaggtGGTGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTCGTGGGCATCCTCCTCCCCATCGTATGTTACCTCAGCCTGCCTCACCTGgtgagtttgccacatggcctaggttatgcaccaccttagggaattctgga Alignment from CESAR gtGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGT-GTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gcagcactaggagacttgtatctccttgtattgtcaacttttctctccaggtGGTGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTCGTGGGCATCCTCCTCCCCATCGTATGTTACCTCAGCCTGCCTCACCTGgtgagtttgccacatggcctaggttatgcaccaccttagggaattctgga Alignment from Spaln_aa2Genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTGTGGGC-ATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gcagcactaggagacttgtatctccttgtattgtcaacttttctctccagGTGGTGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTCGTGGGcATCCTCCTCCCCATCGTATGTTACCTCAGCCTGCCTCACCTGgtgagtttgccacatggcctaggttatgcaccaccttagggaattctgga Alignment from Spaln_nt2Genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGT-GTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gcagcactaggagacttgtatctccttgtattgtcaacttttctctccagGTGGTGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTCGTGGGCATCCTCCTCCCCATCGTATGTTACCTCAGCCTGCCTCACCTGgtgagtttgccacatggcctaggttatgcaccaccttagggaattctgga Alignment from Pairagon GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGT-GTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gcagcactaggagacttgtatctccttgtattgtcaacttttctctccagGTGGTGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTCGTGGGCATCCTCCTCCCCATCGTATGTTACCTCAGCCTGCCTCACCTGgtgagtttgccacatggcctaggttatgcaccaccttagggaattctgga Alignment from Exonerate_protein2genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGT-GTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gcagcactaggagacttgtatctccttgtattgtcaacttttctctccagGTGGTGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTCGTGGGCATCCTCCTCCCCATCGTATGTTACCTCAGCCTGCCTCACCTGgtgagtttgccacatggcctaggttatgcaccaccttagggaattctgga Alignment from Exonerate_coding2genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGT-GTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gcagcactaggagacttgtatctccttgtattgtcaacttttctctccagGTGGTGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTCGTGGGCATCCTCCTCCCCATCGTATGTTACCTCAGCCTGCCTCACCTGgtgagtttgccacatggcctaggttatgcaccaccttagggaattctgga Alignment from GeneWise GTGGCGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGT-GTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gcagcactaggagacttgtatctccttgtattgtcaacttttctctccagGTGGTGTGGATGCCCAGACCTCTGCTCTTGGATACTTCATCACACCCTGTCGTGGGCATCCTCCTCCCCATCGTATGTTACCTCAGCCTGCCTCACCTGgtgagtttgccacatggcctaggttatgcaccaccttagggaattctgga #### Slc29a2_ID795_9 --> 0 - 1 Original Alignment ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCC-ATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGg tgcacatgggacttccctgaccactcaccttctgcttgccacccccccagATCTGGCTGACAGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTATCGGTTTTTCCTGCCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAGTGGggtacacgctgggataatgcaggggatggggcagggggggaagggaggata Alignment from CESAR ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCC-ATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGg tgcacatgggacttccctgaccactcaccttctgcttgccacccccccagATCTGGCTGACAGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTATCGGTTTTTCCTGCCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAGTGGggtacacgctgggataatgcaggggatggggcagggggggaagggaggata Alignment from Spaln_aa2Genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCC-ATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcacatgggacttccctgaccactcaccttctgcttgccacccccccagATCTGGCTGACAGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTATCGGTTTTTCCTGCCcATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAGTGGGgtacacgctgggataatgcaggggatggggcagggggggaagggaggata Alignment from Spaln_nt2Genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTG-CCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcacatgggacttccctgaccactcaccttctgcttgccacccccccagATCTGGCTGACAGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTATCGGTTTTTCCTGCCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAGTGGGgtacacgctgggataatgcaggggatggggcagggggggaagggaggata Alignment from Pairagon ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTG-CCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcacatgggacttccctgaccactcaccttctgcttgccacccccccagATCTGGCTGACAGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTATCGGTTTTTCCTGCCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAGTGGGgtacacgctgggataatgcaggggatggggcagggggggaagggaggata Alignment from Exonerate_protein2genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCC-ATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcacatgggacttccctgaccactcaccttctgcttgccacccccccagATCTGGCTGACAGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTATCGGTTTTTCCTGCCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAGTGGGgtacacgctgggataatgcaggggatggggcagggggggaagggaggata Alignment from Exonerate_coding2genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCC-ATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcacatgggacttccctgaccactcaccttctgcttgccacccccccagATCTGGCTGACAGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTATCGGTTTTTCCTGCCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAGTGGGgtacacgctgggataatgcaggggatggggcagggggggaagggaggata Alignment from GeneWise ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCT-GCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcacatgggacttccctgaccactcaccttctgcttgccacccccccagATCTGGCTGACAGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTATCGGTTTTTCCTGCCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAGTGGGgtacacgctgggataatgcaggggatggggcagggggggaagggaggata #### Slc3a2_ID2301_8 --> 0 - 0 Original Alignment GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGAC-CATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG aggtgtaggtgggaagtggtaggtgttataagggtttctatgtgtttcagGTGTCGCAAGCAGGACTCCTTGCAGACTTTATACCAGACCCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTTCCAGGGACTCCTGTTTTCAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCTCTTCCTGGACAGgtaagccttgccttctgccttgcacggaaatagtgtatacgttatggcat Alignment from CESAR GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGAC-CATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG aggtgtaggtgggaagtggtaggtgttataagggtttctatgtgtttcagGTGTCGCAAGCAGGACTCCTTGCAGACTTTATACCAGACCCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTTCCAGGGACTCCTGTTTTCAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCTCTTCCTGGACAGgtaagccttgccttctgccttgcacggaaatagtgtatacgttatggcat Alignment from Spaln_aa2Genome GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGAC-CATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG aggtgtaggtgggaagtggtaggtgttataagggtttctatgtgtttcagGTGTCGCAAGCAGGACTCCTTGCAGACTTTATACCAGACcCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTTCCAGGGACTCCTGTTTTCAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCTCTTCCTGGACAGgtaagccttgccttctgccttgcacggaaatagtgtatacgttatggcat Alignment from Spaln_nt2Genome GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGA-CCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG aggtgtaggtgggaagtggtaggtgttataagggtttctatgtgtttcagGTGTCGCAAGCAGGACTCCTTGCAGACTTTATACCAGACCCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTTCCAGGGACTCCTGTTTTCAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCTCTTCCTGGACAGgtaagccttgccttctgccttgcacggaaatagtgtatacgttatggcat Alignment from Pairagon GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGA-CCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG aggtgtaggtgggaagtggtaggtgttataagggtttctatgtgtttcagGTGTCGCAAGCAGGACTCCTTGCAGACTTTATACCAGACCCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTTCCAGGGACTCCTGTTTTCAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCTCTTCCTGGACAGgtaagccttgccttctgccttgcacggaaatagtgtatacgttatggcat Alignment from Exonerate_protein2genome GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGAC-CATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG aggtgtaggtgggaagtggtaggtgttataagggtttctatgtgtttcagGTGTCGCAAGCAGGACTCCTTGCAGACTTTATACCAGACCCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTTCCAGGGACTCCTGTTTTCAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCTCTTCCTGGACAGgtaagccttgccttctgccttgcacggaaatagtgtatacgttatggcat Alignment from Exonerate_coding2genome GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCGGAC-CATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG aggtgtaggtgggaagtggtaggtgttataagggtttctatgtgtttcagGTGTCGCAAGCAGGACTCCTTGCAGACTTTATACCAGACCCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTTCCAGGGACTCCTGTTTTCAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCTCTTCCTGGACAGgtaagccttgccttctgccttgcacggaaatagtgtatacgttatggcat Alignment from GeneWise GTGTCGCAAGCAGGACTCCTCGCAGACTTTATACCG-GACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG aggtgtaggtgggaagtggtaggtgttataagggtttctatgtgtttcagGTGTCGCAAGCAGGACTCCTTGCAGACTTTATACCAGACCCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTTCCAGGGACTCCTGTTTTCAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCTCTTCCTGGACAGgtaagccttgccttctgccttgcacggaaatagtgtatacgttatggcat #### Slc3a2_ID2302_7 --> 1 - 0 Original Alignment gCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAA-TCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT ctcttttattctttgctttgtgcaggctaatttctttccgtttgttttaggCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAGTCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAACTCCCTAGTCACTAGGTTTTTGAATGCAACTGGCAGCCAATGGTGCAGCTGGAGTgtaagtagcatgatggtgggtctaggtgaaggtgggaagtggtaggtgtg Alignment from CESAR gCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAA-TCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT ctcttttattctttgctttgtgcaggctaatttctttccgtttgttttaggCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAGTCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAACTCCCTAGTCACTAGGTTTTTGAATGCAACTGGCAGCCAATGGTGCAGCTGGAGTgtaagtagcatgatggtgggtctaggtgaaggtgggaagtggtaggtgtg Alignment from Spaln_aa2Genome GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAA-TCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT ctcttttattctttgctttgtgcaggctaatttctttccgtttgttttagGCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAGTCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAAcTCCCTAGTCACTAGGTTTTTGAATGCAACTGGCAGCCAATGGTGCAGCTGGAGTgtaagtagcatgatggtgggtctaggtgaaggtgggaagtggtaggtgtg Alignment from Spaln_nt2Genome GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAA-TCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT ctcttttattctttgctttgtgcaggctaatttctttccgtttgttttagGCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAGTCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAACTCCCTAGTCACTAGGTTTTTGAATGCAACTGGCAGCCAATGGTGCAGCTGGAGTgtaagtagcatgatggtgggtctaggtgaaggtgggaagtggtaggtgtg Alignment from Pairagon GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAA-TCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT ctcttttattctttgctttgtgcaggctaatttctttccgtttgttttagGCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAGTCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAACTCCCTAGTCACTAGGTTTTTGAATGCAACTGGCAGCCAATGGTGCAGCTGGAGTgtaagtagcatgatggtgggtctaggtgaaggtgggaagtggtaggtgtg Alignment from Exonerate_protein2genome GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAA-TCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT ctcttttattctttgctttgtgcaggctaatttctttccgtttgttttagGCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAGTCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAACTCCCTAGTCACTAGGTTTTTGAATGCAACTGGCAGCCAATGGTGCAGCTGGAGTgtaagtagcatgatggtgggtctaggtgaaggtgggaagtggtaggtgtg Alignment from Exonerate_coding2genome GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAA-TCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT ctcttttattctttgctttgtgcaggctaatttctttccgtttgttttagGCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAGTCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAACTCCCTAGTCACTAGGTTTTTGAATGCAACTGGCAGCCAATGGTGCAGCTGGAGTgtaagtagcatgatggtgggtctaggtgaaggtgggaagtggtaggtgtg Alignment from GeneWise GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAA-TCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT ctcttttattctttgctttgtgcaggctaatttctttccgtttgttttagGCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAGTCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAACTCCCTAGTCACTAGGTTTTTGAATGCAACTGGCAGCCAATGGTGCAGCTGGAGTgtaagtagcatgatggtgggtctaggtgaaggtgggaagtggtaggtgtg #### Slc3a2_ID2303_6 --> 0 - 2 Original Alignment AATGCACCCTTGTACTTGGCTGAGTGGCAGAATATCACCAAGAAC-TTAAGTGAGGACag cagccatgggaaggtgtgttacctgtttttttttcccttcttgttaatagAATGCACCCTTGTACTTAGCTGAGTGGCAGAACATCACCAAGAACCTTAAGTGAGGACaggtaagaacccagcaccccagcctggctgagcccattatgggagccctgag Alignment from CESAR AATGCACCCTTGTACTTGGCTGAGTGGCAGAATATCACCAAGAAC-TTAAGTGAGGACag cagccatgggaaggtgtgttacctgtttttttttcccttcttgttaatagAATGCACCCTTGTACTTAGCTGAGTGGCAGAACATCACCAAGAACCTTAAGTGAGGACaggtaagaacccagcaccccagcctggctgagcccattatgggagccctgag Alignment from Spaln_aa2Genome AATGCACCCTTGTACTTGGCTGAGTGGCAGAATATCACCAAGAACTTAAG TGAGGAC cagccatgggaaggtgtgttacctgtttttttttcccttcttgttaatagAATGCACCCTTGTACTTAGCTGAGTGGCAGAACATCACCAAGAACCTTAAgtgaggacaggtaagaacccagcaccccagcctggctgagcccattatgggagCCCTGAG Alignment from Spaln_nt2Genome AATGCACCCTTGTACTTGGCTGAGTGGCAGAATATCACCAAGAA-CTTAAGTGAGGACAG cagccatgggaaggtgtgttacctgtttttttttcccttcttgttaatagAATGCACCCTTGTACTTAGCTGAGTGGCAGAACATCACCAAGAACCTTAAGTGAGGACAGgtaagaacccagcaccccagcctggctgagcccattatgggagccctgag Alignment from Pairagon AATGCACCCTTGTACTTGGCTGAGTGGCAGAATATCACCAAGAA-CTTAAGTGAGGACAG cagccatgggaaggtgtgttacctgtttttttttcccttcttgttaatagAATGCACCCTTGTACTTAGCTGAGTGGCAGAACATCACCAAGAACCTTAAGTGAGGACAGgtaagaacccagcaccccagcctggctgagcccattatgggagccctgag Alignment from Exonerate_protein2genome AATGCACCCTTGTACTTGGCTGAGTGGCAGAATATCACCAAGAAC-TTAAGTGAGGACAG cagccatgggaaggtgtgttacctgtttttttttcccttcttgttaatagAATGCACCCTTGTACTTAGCTGAGTGGCAGAACATCACCAAGAACCTTAAGTGAGGACAGgtaagaacccagcaccccagcctggctgagcccattatgggagccctgag Alignment from Exonerate_coding2genome AATGCACCCTTGTACTTGGCTGAGTGGCAGAATATCACCAAGAAC-TTAAGTGAGGACAG cagccatgggaaggtgtgttacctgtttttttttcccttcttgttaatagAATGCACCCTTGTACTTAGCTGAGTGGCAGAACATCACCAAGAACCTTAAGTGAGGACAGgtaagaacccagcaccccagcctggctgagcccattatgggagccctgag Alignment from GeneWise AATGCACCCTTGTACTTGGCTGAGTGGCAGAATATCACCAAGAACTTAAG cagccatgggaaggtgtgttacctgtttttttttcccttcttgttaatagAATGCACCCTTGTACTTAGCTGAGTGGCAGAACATCACCAAGAACCTTAAgtgaggacaggtaagaacccagcaccccagcctggctgagcccattatgggagccctgag #### Slit1_ID8222_17 --> 1 - 2 Original Alignment aCGACTGAACAACAATGAGATTTCTATCCTAGAG-GCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAat tcaggttgaccacatatgtatgtgtttggtgacctctgcttcctttccagaCGACTAAACAACAATGAGATTTCTATCCTAGAGCGCCACTGGGTTGTTTAGGAAGCTCTCACATCTGAAGAAAatgtataattcccactggtgggagggtccctggcaagacacacatgggatgg Alignment from CESAR aCGACTGAACAACAATGAGATTTCTATCCTAGAG-GCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAat tcaggttgaccacatatgtatgtgtttggtgacctctgcttcctttccagaCGACTAAACAACAATGAGATTTCTATCCTAGAGCGCCACTGGGTTGTTTAGGAAGCTCTCACATCTGAAGAAAatgtataattcccactggtgggagggtccctggcaagacacacatgggatgg Alignment from Spaln_aa2Genome ACGACTGAACAACAATGAGATTTCTATCCTAGAG-GCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAAT tcaggttgaccacatatgtatgtgtttggtgacctctgcttcctttccagACGACTAAACAACAATGAGATTTCTATCCTAGAGcGCCACTGGGTTGTTTAGGAAGCTCTCACATCTGAAGAAAATgtataattcccactggtgggagggtccctggcaagacacacatgggatgg Alignment from Spaln_nt2Genome ACGACTGAACAACAATGAGATTTCTATCCTAGAG-GCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAAT tcaggttgaccacatatgtatgtgtttggtgacctctgcttcctttccagACGACTAAACAACAATGAGATTTCTATCCTAGAGCGCCACTGGGTTGTTTAGGAAGCTCTCACATCTGAAGAAAATgtataattcccactggtgggagggtccctggcaagacacacatgggatgg Alignment from Pairagon ACGACTGAACAACAATGAGATTTCTATCCTAGAG-GCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAAT tcaggttgaccacatatgtatgtgtttggtgacctctgcttcctttccagACGACTAAACAACAATGAGATTTCTATCCTAGAGCGCCACTGGGTTGTTTAGGAAGCTCTCACATCTGAAGAAAATgtataattcccactggtgggagggtccctggcaagacacacatgggatgg Alignment from Exonerate_protein2genome ACGACTGAACAACAATGAGATTTCTATCCTAGAG-GCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAAT tcaggttgaccacatatgtatgtgtttggtgacctctgcttcctttccagACGACTAAACAACAATGAGATTTCTATCCTAGAGCGCCACTGGGTTGTTTAGGAAGCTCTCACATCTGAAGAAAATgtataattcccactggtgggagggtccctggcaagacacacatgggatgg Alignment from Exonerate_coding2genome ACGACTGAACAACAATGAGATTTCTATCCTAGAG-GCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAAT tcaggttgaccacatatgtatgtgtttggtgacctctgcttcctttccagACGACTAAACAACAATGAGATTTCTATCCTAGAGCGCCACTGGGTTGTTTAGGAAGCTCTCACATCTGAAGAAAATgtataattcccactggtgggagggtccctggcaagacacacatgggatgg Alignment from GeneWise ACGACTGAACAACAATGAGATTTCTATCCTAGAG-GCCACTGGGTTGTTTAAGAAGCTCTCACATCTGAAGAAAAT tcaggttgaccacatatgtatgtgtttggtgacctctgcttcctttccagACGACTAAACAACAATGAGATTTCTATCCTAGAGCGCCACTGGGTTGTTTAGGAAGCTCTCACATCTGAAGAAAATgtataattcccactggtgggagggtccctggcaagacacacatgggatgg #### Slit1_ID8229_10 --> 1 - 2 Original Alignment cCGCCTGGAGTTG-AACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGat ggttgctaagggtgaccctccggcttcccgcttgccttgcccctccacagcCACCTGGAGTTGCAACGGAATCAGATCTATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGatgtgagtgcagggctttggcagtctcaaaggaagagtctggggctagacct Alignment from CESAR cCGCCTGGAGTTG-AACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGat ggttgctaagggtgaccctccggcttcccgcttgccttgcccctccacagcCACCTGGAGTTGCAACGGAATCAGATCTATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGatgtgagtgcagggctttggcagtctcaaaggaagagtctggggctagacct Alignment from Spaln_aa2Genome CCGCCTGGAGTTG-AACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT ggttgctaagggtgaccctccggcttcccgcttgccttgcccctccacagCCACCTGGAGTTGcAACGGAATCAGATCTATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGATgtgagtgcagggctttggcagtctcaaaggaagagtctggggctagacct Alignment from Spaln_nt2Genome CCGCCTGGAGTTG-AACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT ggttgctaagggtgaccctccggcttcccgcttgccttgcccctccacagCCACCTGGAGTTGCAACGGAATCAGATCTATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGATgtgagtgcagggctttggcagtctcaaaggaagagtctggggctagacct Alignment from Pairagon CCGCCTGGAGTTG-AACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT ggttgctaagggtgaccctccggcttcccgcttgccttgcccctccacagCCACCTGGAGTTGCAACGGAATCAGATCTATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGATgtgagtgcagggctttggcagtctcaaaggaagagtctggggctagacct Alignment from Exonerate_protein2genome CCGCCTGGAGTTG-AACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT ggttgctaagggtgaccctccggcttcccgcttgccttgcccctccacagCCACCTGGAGTTGCAACGGAATCAGATCTATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGATgtgagtgcagggctttggcagtctcaaaggaagagtctggggctagacct Alignment from Exonerate_coding2genome CCGCCTGGAGTTG-AACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT ggttgctaagggtgaccctccggcttcccgcttgccttgcccctccacagCCACCTGGAGTTGCAACGGAATCAGATCTATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGATgtgagtgcagggctttggcagtctcaaaggaagagtctggggctagacct Alignment from GeneWise CCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT ggttgctaagggtgaccctccggcttcccgcttgccttgcccctccacagccacctggagT---------TGCAACGGAATCAGATCTATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGATgtgagtgcagggctttggcagtctcaaaggaagagtctggggctagacct #### Slit1_ID8232_7 --> 1 - 2 Original Alignment gACCCTGAACAACAACAACATCACCACCATC-CCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCtt gggtgtgtgctgctgggcaggtgttaaacatggcctttccatgtacccaggACCCTGAACAACAACAACATCAGCACCATCCCCTGTGTCCAGTTTCAATCATATGCCTAAGCTTCGGACTttgtaagtcaccttggcagttagaagagggtgtgggtataagtggggctgcc Alignment from CESAR gACCCTGAACAACAACAACATCACCACCATC-CCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCtt gggtgtgtgctgctgggcaggtgttaaacatggcctttccatgtacccaggACCCTGAACAACAACAACATCAGCACCATCCCCTGTGTCCAGTTTCAATCATATGCCTAAGCTTCGGACTttgtaagtcaccttggcagttagaagagggtgtgggtataagtggggctgcc Alignment from Spaln_aa2Genome GACCCTGAACAACAACAACATCACCACCATC-CCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT gggtgtgtgctgctgggcaggtgttaaacatggcctttccatgtacccagGACCCTGAACAACAACAACATCAGCACCATCcCCTGTGTCCAGTTTCAATCATATGCCTAAGCTTCGGACTTTgtaagtcaccttggcagttagaagagggtgtgggtataagtggggctgcc Alignment from Spaln_nt2Genome GACCCTGAACAACAACAACATCACCACCATCC-CTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT gggtgtgtgctgctgggcaggtgttaaacatggcctttccatgtacccagGACCCTGAACAACAACAACATCAGCACCATCCCCTGTGTCCAGTTTCAATCATATGCCTAAGCTTCGGACTTTgtaagtcaccttggcagttagaagagggtgtgggtataagtggggctgcc Alignment from Pairagon GACCCTGAACAACAACAACATCACCACCAT-CCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT gggtgtgtgctgctgggcaggtgttaaacatggcctttccatgtacccagGACCCTGAACAACAACAACATCAGCACCATCCCCTGTGTCCAGTTTCAATCATATGCCTAAGCTTCGGACTTTgtaagtcaccttggcagttagaagagggtgtgggtataagtggggctgcc Alignment from Exonerate_protein2genome GACCCTGAACAACAACAACATCACCACCATC-CCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT gggtgtgtgctgctgggcaggtgttaaacatggcctttccatgtacccagGACCCTGAACAACAACAACATCAGCACCATCCCCTGTGTCCAGTTTCAATCATATGCCTAAGCTTCGGACTTTgtaagtcaccttggcagttagaagagggtgtgggtataagtggggctgcc Alignment from Exonerate_coding2genome GACCCTGAACAACAACAACATCACCACCATC-CCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT gggtgtgtgctgctgggcaggtgttaaacatggcctttccatgtacccagGACCCTGAACAACAACAACATCAGCACCATCCCCTGTGTCCAGTTTCAATCATATGCCTAAGCTTCGGACTTTgtaagtcaccttggcagttagaagagggtgtgggtataagtggggctgcc Alignment from GeneWise GACCCTGAACAACAACAACATCACCACCATCCCT-GTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT gggtgtgtgctgctgggcaggtgttaaacatggcctttccatgtacccagGACCCTGAACAACAACAACATCAGCACCATCCCCTGTGTCCAGTTTCAATCATATGCCTAAGCTTCGGACTTTgtaagtcaccttggcagttagaagagggtgtgggtataagtggggctgcc #### Smc3_ID11318_6 --> 0 - 2 Original Alignment ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATT-GGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCac agttgtccagctggccatctgggcttttttcttttctttttccactgcagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTCGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCacgtaagaatttgtttttgcttacagtgtgttacaaatgttcatgaaaacat Alignment from CESAR ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATT-GGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCac agttgtccagctggccatctgggcttttttcttttctttttccactgcagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTCGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCacgtaagaatttgtttttgcttacagtgtgttacaaatgttcatgaaaacat Alignment from Spaln_aa2Genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATT-GGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC agttgtccagctggccatctgggcttttttcttttctttttccactgcagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTcGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCACgtaagaatttgtttttgcttacagtgtgttacaaatgttcatgaaaacat Alignment from Spaln_nt2Genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATT-GGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC agttgtccagctggccatctgggcttttttcttttctttttccactgcagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTCGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCACgtaagaatttgtttttgcttacagtgtgttacaaatgttcatgaaaacat Alignment from Pairagon ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATT-GGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC agttgtccagctggccatctgggcttttttcttttctttttccactgcagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTCGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCACgtaagaatttgtttttgcttacagtgtgttacaaatgttcatgaaaacat Alignment from Exonerate_protein2genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATT-GGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC agttgtccagctggccatctgggcttttttcttttctttttccactgcagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTCGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCACgtaagaatttgtttttgcttacagtgtgttacaaatgttcatgaaaacat Alignment from Exonerate_coding2genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATT-GGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC agttgtccagctggccatctgggcttttttcttttctttttccactgcagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTCGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCACgtaagaatttgtttttgcttacagtgtgttacaaatgttcatgaaaacat Alignment from GeneWise ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTT-ATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC agttgtccagctggccatctgggcttttttcttttctttttccactgcagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTCGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCACgtaagaatttgtttttgcttacagtgtgttacaaatgttcatgaaaacat #### Smc3_ID11337_25 --> 0 - 0 Original Alignment TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAG-CGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG ctcgctagactccctgtggcctgtaagtcaccgtcctgccctctctatagTTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCATTTAACTTTCAAACAAgtgagtgctgttgataatgagcctagtgtggagggggatctaatgtgtgt Alignment from CESAR TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAG-CGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG ctcgctagactccctgtggcctgtaagtcaccgtcctgccctctctatagTTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCATTTAACTTTCAAACAAgtgagtgctgttgataatgagcctagtgtggagggggatctaatgtgtgt Alignment from Spaln_aa2Genome TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAG-CGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG ctcgctagactccctgtggcctgtaagtcaccgtcctgccctctctatagTTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGcCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCATTTAACTTTCAAACAAgtgagtgctgttgataatgagcctagtgtggagggggatctaatgtgtgt Alignment from Spaln_nt2Genome TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGAT-AAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG ctcgctagactccctgtggcctgtaagtcaccgtcctgccctctctatagTTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCATTTAACTTTCAAACAAgtgagtgctgttgataatgagcctagtgtggagggggatctaatgtgtgt Alignment from Pairagon TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAG-CGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG ctcgctagactccctgtggcctgtaagtcaccgtcctgccctctctatagTTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCATTTAACTTTCAAACAAgtgagtgctgttgataatgagcctagtgtggagggggatctaatgtgtgt Alignment from Exonerate_protein2genome TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAG-CGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG ctcgctagactccctgtggcctgtaagtcaccgtcctgccctctctatagTTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCATTTAACTTTCAAACAAgtgagtgctgttgataatgagcctagtgtggagggggatctaatgtgtgt Alignment from Exonerate_coding2genome TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAG-CGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG ctcgctagactccctgtggcctgtaagtcaccgtcctgccctctctatagTTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCATTTAACTTTCAAACAAgtgagtgctgttgataatgagcctagtgtggagggggatctaatgtgtgt Alignment from GeneWise TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATA-AAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG ctcgctagactccctgtggcctgtaagtcaccgtcctgccctctctatagTTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCATTTAACTTTCAAACAAgtgagtgctgttgataatgagcctagtgtggagggggatctaatgtgtgt #### Smc3_ID11338_26 --> 0 - 0 Original Alignment GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTG-GTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG ttgtttcaggtgtagaaacatgcctaagtcttatctccttcaatttttagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGCGTGATGAAGAAAGGTGATGTGGAGGGCAGTCAATCTCAGGACGAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTCGGGATCAGGgtagtaaaccctttatattcagtttttgctacagctttatcatcgtagac Alignment from CESAR GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTG-GTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG ttgtttcaggtgtagaaacatgcctaagtcttatctccttcaatttttagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGCGTGATGAAGAAAGGTGATGTGGAGGGCAGTCAATCTCAGGACGAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTCGGGATCAGGgtagtaaaccctttatattcagtttttgctacagctttatcatcgtagac Alignment from Spaln_aa2Genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTG-GTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG ttgtttcaggtgtagaaacatgcctaagtcttatctccttcaatttttagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGcGTGATGAAGAAAGGTGATGTGGAGGGCAGTCAATCTCAGGACGAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTCGGGATCAGGgtagtaaaccctttatattcagtttttgctacagctttatcatcgtagac Alignment from Spaln_nt2Genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGAC-TTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG ttgtttcaggtgtagaaacatgcctaagtcttatctccttcaatttttagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGCGTGATGAAGAAAGGTGATGTGGAGGGCAGTCAATCTCAGGACGAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTCGGGATCAGGgtagtaaaccctttatattcagtttttgctacagctttatcatcgtagac Alignment from Pairagon GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTG-GTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG ttgtttcaggtgtagaaacatgcctaagtcttatctccttcaatttttagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGCGTGATGAAGAAAGGTGATGTGGAGGGCAGTCAATCTCAGGACGAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTCGGGATCAGGgtagtaaaccctttatattcagtttttgctacagctttatcatcgtagac Alignment from Exonerate_protein2genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTG-GTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG ttgtttcaggtgtagaaacatgcctaagtcttatctccttcaatttttagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGCGTGATGAAGAAAGGTGATGTGGAGGGCAGTCAATCTCAGGACGAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTCGGGATCAGGgtagtaaaccctttatattcagtttttgctacagctttatcatcgtagac Alignment from Exonerate_coding2genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTG-GTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG ttgtttcaggtgtagaaacatgcctaagtcttatctccttcaatttttagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGCGTGATGAAGAAAGGTGATGTGGAGGGCAGTCAATCTCAGGACGAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTCGGGATCAGGgtagtaaaccctttatattcagtttttgctacagctttatcatcgtagac Alignment from GeneWise GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTG-GTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGGGTG ttgtttcaggtgtagaaacatgcctaagtcttatctccttcaatttttagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGCGTGATGAAGAAAGGTGATGTGGAGGGCAGTCAATCTCAGGACGAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTCGGGATCAGGGTAgtaaaccctttatattcagtttttgctacagctttatcatcgtagac #### Smc5_ID5110_21 --> 0 - 0 Original Alignment GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGG-AAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tataattttatcctttgataaatttttccccctctcttgtcatcttacagGTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGCAAGAAAGTTGAACTAGATGAATATAGGGAAAACATTTTGCAGgtaccatttatcctgatttgtttgccatgaatgggatgagcatacaaatt Alignment from CESAR GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGG-AAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tataattttatcctttgataaatttttccccctctcttgtcatcttacagGTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGCAAGAAAGTTGAACTAGATGAATATAGGGAAAACATTTTGCAGgtaccatttatcctgatttgtttgccatgaatgggatgagcatacaaatt Alignment from Spaln_aa2Genome GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGG-AAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tataattttatcctttgataaatttttccccctctcttgtcatcttacagGTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGcAAGAAAGTTGAACTAGATGAATATAGGGAAAACATTTTGCAGgtaccatttatcctgatttgtttgccatgaatgggatgagcatacaaatt Alignment from Spaln_nt2Genome GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCA-GGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tataattttatcctttgataaatttttccccctctcttgtcatcttacagGTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGCAAGAAAGTTGAACTAGATGAATATAGGGAAAACATTTTGCAGgtaccatttatcctgatttgtttgccatgaatgggatgagcatacaaatt Alignment from Pairagon GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGG-AAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tataattttatcctttgataaatttttccccctctcttgtcatcttacagGTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGCAAGAAAGTTGAACTAGATGAATATAGGGAAAACATTTTGCAGgtaccatttatcctgatttgtttgccatgaatgggatgagcatacaaatt Alignment from Exonerate_protein2genome GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAG-GGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tataattttatcctttgataaatttttccccctctcttgtcatcttacagGTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGCAAGAAAGTTGAACTAGATGAATATAGGGAAAACATTTTGCAGgtaccatttatcctgatttgtttgccatgaatgggatgagcatacaaatt Alignment from Exonerate_coding2genome GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAG-GGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tataattttatcctttgataaatttttccccctctcttgtcatcttacagGTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGCAAGAAAGTTGAACTAGATGAATATAGGGAAAACATTTTGCAGgtaccatttatcctgatttgtttgccatgaatgggatgagcatacaaatt Alignment from GeneWise GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGG-AAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tataattttatcctttgataaatttttccccctctcttgtcatcttacagGTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGCAAGAAAGTTGAACTAGATGAATATAGGGAAAACATTTTGCAGgtaccatttatcctgatttgtttgccatgaatgggatgagcatacaaatt #### Smc5_ID5113_20 --> 0 - 0 Original Alignment GCTTTTCAAGATCTCCCAAACACA-TTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG atagaactcactattccatctttagtgaccactcccactttgtcttccagGCTTTTCAAGATCTCCCAAACACACTTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGATTGAATCCTTCGgtaagttgtcatattctcagtatccatcccacagttattatactgctgtc Alignment from CESAR GCTTTTCAAGATCTCCCAAACACA-TTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG atagaactcactattccatctttagtgaccactcccactttgtcttccagGCTTTTCAAGATCTCCCAAACACACTTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGATTGAATCCTTCGgtaagttgtcatattctcagtatccatcccacagttattatactgctgtc Alignment from Spaln_aa2Genome GCTTTTCAAGATCTCCCAAACACA-TTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG atagaactcactattccatctttagtgaccactcccactttgtcttccagGCTTTTCAAGATCTCCCAAACACAcTTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGATTGAATCCTTCGgtaagttgtcatattctcagtatccatcccacagttattatactgctgtc Alignment from Spaln_nt2Genome GCTTTTCAAGATCTCCCAAACACA-TTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG atagaactcactattccatctttagtgaccactcccactttgtcttccagGCTTTTCAAGATCTCCCAAACACACTTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGATTGAATCCTTCGgtaagttgtcatattctcagtatccatcccacagttattatactgctgtc Alignment from Pairagon GCTTTTCAAGATCTCCCAAACACA-TTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG atagaactcactattccatctttagtgaccactcccactttgtcttccagGCTTTTCAAGATCTCCCAAACACACTTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGATTGAATCCTTCGgtaagttgtcatattctcagtatccatcccacagttattatactgctgtc Alignment from Exonerate_protein2genome GCTTTTCAAGATCTCCCAAACACA-TTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG atagaactcactattccatctttagtgaccactcccactttgtcttccagGCTTTTCAAGATCTCCCAAACACACTTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGATTGAATCCTTCGgtaagttgtcatattctcagtatccatcccacagttattatactgctgtc Alignment from Exonerate_coding2genome GCTTTTCAAGATCTCCCAAACACA-TTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG atagaactcactattccatctttagtgaccactcccactttgtcttccagGCTTTTCAAGATCTCCCAAACACACTTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGATTGAATCCTTCGgtaagttgtcatattctcagtatccatcccacagttattatactgctgtc Alignment from GeneWise GCTTTTCAAGATCTCCCAAACACA-TTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGACTGAATCCTTCG atagaactcactattccatctttagtgaccactcccactttgtcttccagGCTTTTCAAGATCTCCCAAACACACTTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCTTCGTGCTTCACAGGATTGAATCCTTCGgtaagttgtcatattctcagtatccatcccacagttattatactgctgtc #### Snx32_ID1068_10 --> 0 - 0 Original Alignment AAACTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCA-CAGGCAGCCAAG aggaaggaccaccagccctctaggttccctcggactttcaacatttttagAAATTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACCAGGCAGCCAAGgtaagtggcagtctgggaagtctgagcattgaaccatgtggacagtcatc Alignment from CESAR AAACTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCA-CAGGCAGCCAAG aggaaggaccaccagccctctaggttccctcggactttcaacatttttagAAATTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACCAGGCAGCCAAGgtaagtggcagtctgggaagtctgagcattgaaccatgtggacagtcatc Alignment from Spaln_aa2Genome AAACTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCA-CAGGCAGCCAAG aggaaggaccaccagccctctaggttccctcggactttcaacatttttagAAATTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCAcCAGGCAGCCAAGgtaagtggcagtctgggaagtctgagcattgaaccatgtggacagtcatc Alignment from Spaln_nt2Genome AAACTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCAC-AGGCAGCCAAG aggaaggaccaccagccctctaggttccctcggactttcaacatttttagAAATTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACCAGGCAGCCAAGgtaagtggcagtctgggaagtctgagcattgaaccatgtggacagtcatc Alignment from Pairagon AAACTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCA-CAGGCAGCCAAG aggaaggaccaccagccctctaggttccctcggactttcaacatttttagAAATTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACCAGGCAGCCAAGgtaagtggcagtctgggaagtctgagcattgaaccatgtggacagtcatc Alignment from Exonerate_protein2genome AAACTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAGG aggaaggaccaccagccctctaggttccctcggactttcaacatttttagAAATTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACCAGGCAGCCAAGgtaagtggcagtctgggaagtctgagcattgaaccatgtggacagtcatc Alignment from Exonerate_coding2genome AAACTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAGG aggaaggaccaccagccctctaggttccctcggactttcaacatttttagAAATTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACCAGGCAGCCAAGgtaagtggcagtctgggaagtctgagcattgaaccatgtggacagtcatc Alignment from GeneWise AAACTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGAC-TCACAGGCAGCCAAG aggaaggaccaccagccctctaggttccctcggactttcaacatttttagAAATTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACCAGGCAGCCAAGgtaagtggcagtctgggaagtctgagcattgaaccatgtggacagtcatc #### Snx32_ID1072_6 --> 0 - 0 Original Alignment CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGAT-GAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acgacaccacctggtgcacccaagcgtctactggggctcatttgcttcagCTGAGTGTTCGGGAGAAGAACAGGAAGGAAGTATTGGGGGGGCTCCTGAGAAGCATTGTCAGGTCTGCAGACCGAAGTCCTCATCACCGGCGGCATATCAGGGCTCAAGgcaagtctttctgtgggaggagacccatgaacagagcgggctcccaggga Alignment from CESAR CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGAT-GAAGTCCTCATCACCGGC---ATATCAGGGCTCAAG acgacaccacctggtgcacccaagcgtctactggggctcatttgcttcagCTGAGTGTTCGGGAGAAGAACAGGAAGGAAGTATTGGGGGGGCTCCTGAGAAGCATTGTCAGGTCTGCAGACCGAAGTCCTCATCACCGGCGGCATATCAGGGCTCAAGgcaagtctttctgtgggaggagacccatgaacagagcgggctcccaggga Alignment from Spaln_aa2Genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGAT-GAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acgacaccacctggtgcacccaagcgtctactggggctcatttgcttcagCTGAGTGTTCGGGAGAAGAACAGGAAGGAAGTATTGGGGGGGCTCCTGAGAAGCATTGTCAGGTCTGCAGACcGAAGTCCTCATCACCGGCGGCATATCAGGGCTCAAGgcaagtctttctgtgggaggagacccatgaacagagcgggctcccaggga Alignment from Spaln_nt2Genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGAT-GAAGTCCTC---ATCACCGGCATATCAGGGCTCAAG acgacaccacctggtgcacccaagcgtctactggggctcatttgcttcagCTGAGTGTTCGGGAGAAGAACAGGAAGGAAGTATTGGGGGGGCTCCTGAGAAGCATTGTCAGGTCTGCAGACCGAAGTCCTCATCACCGGCGGCATATCAGGGCTCAAGgcaagtctttctgtgggaggagacccatgaacagagcgggctcccaggga Alignment from Pairagon CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGA-TGAAGTCCTCATCAC---CGGCATATCAGGGCTCAAG acgacaccacctggtgcacccaagcgtctactggggctcatttgcttcagCTGAGTGTTCGGGAGAAGAACAGGAAGGAAGTATTGGGGGGGCTCCTGAGAAGCATTGTCAGGTCTGCAGACCGAAGTCCTCATCACCGGCGGCATATCAGGGCTCAAGgcaagtctttctgtgggaggagacccatgaacagagcgggctcccaggga Alignment from Exonerate_protein2genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGAT-GAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acgacaccacctggtgcacccaagcgtctactggggctcatttgcttcagCTGAGTGTTCGGGAGAAGAACAGGAAGGAAGTATTGGGGGGGCTCCTGAGAAGCATTGTCAGGTCTGCAGACCGAAGTCCTCATCACCGGCGGCATATCAGGGCTCAAGgcaagtctttctgtgggaggagacccatgaacagagcgggctcccaggga Alignment from Exonerate_coding2genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGAT-GAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acgacaccacctggtgcacccaagcgtctactggggctcatttgcttcagCTGAGTGTTCGGGAGAAGAACAGGAAGGAAGTATTGGGGGGGCTCCTGAGAAGCATTGTCAGGTCTGCAGACCGAAGTCCTCATCACCGGCGGCATATCAGGGCTCAAGgcaagtctttctgtgggaggagacccatgaacagagcgggctcccaggga Alignment from GeneWise CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGAT-GAAGTCCTCATCACCGGC---ATATCAGGGCTCAAG------------ acgacaccacctggtgcacccaagcgtctactggggctcatttgcttcagCTGAGTGTTCGGGAGAAGAACAGGAAGGAAGTATTGGGGGGGCTCCTGAGAAGCATTGTCAGGTCTGCAGACCGAAGTCCTCATCACCGGCGGCATATCAGGGCTCAAGGCAAGTCTTTCTgtgggaggagacccatgaacagagcgggctcccaggga #### Sptbn2_ID610_5 --> 1 - 2 Original Alignment aTACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCC-ATTGTGCACAAACACcg tgtccttatatcacagagcattcagtgttaagtgcatcttgggctttcagaTACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCCATTGTGCACAAACACcggtaagcaggtggggttagtgacccaggcacacatagatgggcagggagag Alignment from CESAR aTACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCC-ATTGTGCACAAACACcg tgtccttatatcacagagcattcagtgttaagtgcatcttgggctttcagaTACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCCATTGTGCACAAACACcggtaagcaggtggggttagtgacccaggcacacatagatgggcagggagag Alignment from Spaln_aa2Genome ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCC-ATTGTGCACAAACACCG tgtccttatatcacagagcattcagtgttaagtgcatcttgggctttcagATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCcATTGTGCACAAACACCGgtaagcaggtggggttagtgacccaggcacacatagatgggcagggagag Alignment from Spaln_nt2Genome ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGC-CATTGTGCACAAACACCG tgtccttatatcacagagcattcagtgttaagtgcatcttgggctttcagATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCCATTGTGCACAAACACCGgtaagcaggtggggttagtgacccaggcacacatagatgggcagggagag Alignment from Pairagon ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATG-CCATTGTGCACAAACACCG tgtccttatatcacagagcattcagtgttaagtgcatcttgggctttcagATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCCATTGTGCACAAACACCGgtaagcaggtggggttagtgacccaggcacacatagatgggcagggagag Alignment from Exonerate_protein2genome ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCC-ATTGTGCACAAACACCG tgtccttatatcacagagcattcagtgttaagtgcatcttgggctttcagATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCCATTGTGCACAAACACCGgtaagcaggtggggttagtgacccaggcacacatagatgggcagggagag Alignment from Exonerate_coding2genome ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCC-ATTGTGCACAAACACCG tgtccttatatcacagagcattcagtgttaagtgcatcttgggctttcagATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCCATTGTGCACAAACACCGgtaagcaggtggggttagtgacccaggcacacatagatgggcagggagag Alignment from GeneWise ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAAT-GCCATTGTGCACAAACACCG tgtccttatatcacagagcattcagtgttaagtgcatcttgggctttcagATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCCCATTGTGCACAAACACCGgtaagcaggtggggttagtgacccaggcacacatagatgggcagggagag #### Sptbn2_ID628_23 --> 0 - 2 Original Alignment GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAA-GCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGag ctcttacccccaagcacctgctgcctgacgccatgcttgtccctttacagGACGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAACGCCCTTGCTGATTATGCCCAGACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGaggtgagagtgtgagtatcatgagccttggccgcatagaatagaaagctggg Alignment from CESAR GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAA-GCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGag ctcttacccccaagcacctgctgcctgacgccatgcttgtccctttacagGACGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAACGCCCTTGCTGATTATGCCCAGACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGaggtgagagtgtgagtatcatgagccttggccgcatagaatagaaagctggg Alignment from Spaln_aa2Genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAA-GCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG ctcttacccccaagcacctgctgcctgacgccatgcttgtccctttacagGACGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAcGCCCTTGCTGATTATGCCCAGACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtgagagtgtgagtatcatgagccttggccgcatagaatagaaagctggg Alignment from Spaln_nt2Genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAA-GCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG ctcttacccccaagcacctgctgcctgacgccatgcttgtccctttacagGACGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAACGCCCTTGCTGATTATGCCCAGACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtgagagtgtgagtatcatgagccttggccgcatagaatagaaagctggg Alignment from Pairagon GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAA-GCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG ctcttacccccaagcacctgctgcctgacgccatgcttgtccctttacagGACGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAACGCCCTTGCTGATTATGCCCAGACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtgagagtgtgagtatcatgagccttggccgcatagaatagaaagctggg Alignment from Exonerate_protein2genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAA-GCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG ctcttacccccaagcacctgctgcctgacgccatgcttgtccctttacagGACGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAACGCCCTTGCTGATTATGCCCAGACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtgagagtgtgagtatcatgagccttggccgcatagaatagaaagctggg Alignment from Exonerate_coding2genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAA-GCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG ctcttacccccaagcacctgctgcctgacgccatgcttgtccctttacagGACGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAACGCCCTTGCTGATTATGCCCAGACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtgagagtgtgagtatcatgagccttggccgcatagaatagaaagctggg Alignment from GeneWise GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAA-GCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG ctcttacccccaagcacctgctgcctgacgccatgcttgtccctttacagGACGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAACGCCCTTGCTGATTATGCCCAGACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtgagagtgtgagtatcatgagccttggccgcatagaatagaaagctggg #### Sptbn2_ID632_27 --> 1 - 0 Original Alignment gGATGTGTCCTCTGCAGATTTAGTCATCAAAAAC-CAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggacagcctgtaaccctctatcactgtcgttgcagaGATGTGTCCTCTGCAGATTTAGTCATCAAGAACCCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGATAGGTTCTCCTCCTGCATTGACATGGGCCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAGgtaaggaagacctggagagaatccagctagatgcacctaacagggcccac Alignment from CESAR gGATGTGTCCTCTGCAGATTTAGTCATCAAAAAC-CAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggacagcctgtaaccctctatcactgtcgttgcagaGATGTGTCCTCTGCAGATTTAGTCATCAAGAACCCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGATAGGTTCTCCTCCTGCATTGACATGGGCCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAGgtaaggaagacctggagagaatccagctagatgcacctaacagggcccac Alignment from Spaln_aa2Genome GGATGTGTCCTCTGCAGATTTAGTCATCAAAAAC-CAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggacagcctgtaaccctctatcactgtcgttgcagAGATGTGTCCTCTGCAGATTTAGTCATCAAGAACcCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGATAGGTTCTCCTCCTGCATTGACATGGGCCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAGgtaaggaagacctggagagaatccagctagatgcacctaacagggcccac Alignment from Spaln_nt2Genome GGATGTGTCCTCTGCAGATTTAGTCATCAAA-AACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggacagcctgtaaccctctatcactgtcgttgcagAGATGTGTCCTCTGCAGATTTAGTCATCAAGAACCCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGATAGGTTCTCCTCCTGCATTGACATGGGCCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAGgtaaggaagacctggagagaatccagctagatgcacctaacagggcccac Alignment from Pairagon GGATGTGTCCTCTGCAGATTTAGTCATCAAAAA-CCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggacagcctgtaaccctctatcactgtcgttgcagAGATGTGTCCTCTGCAGATTTAGTCATCAAGAACCCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGATAGGTTCTCCTCCTGCATTGACATGGGCCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAGgtaaggaagacctggagagaatccagctagatgcacctaacagggcccac Alignment from Exonerate_protein2genome GGATGTGTCCTCTGCAGATTTAGTCATCAAAAAC-CAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggacagcctgtaaccctctatcactgtcgttgcagAGATGTGTCCTCTGCAGATTTAGTCATCAAGAACCCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGATAGGTTCTCCTCCTGCATTGACATGGGCCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAGgtaaggaagacctggagagaatccagctagatgcacctaacagggcccac Alignment from Exonerate_coding2genome GGATGTGTCCTCTGCAGATTTAGTCATCAAAAAC-CAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggacagcctgtaaccctctatcactgtcgttgcagAGATGTGTCCTCTGCAGATTTAGTCATCAAGAACCCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGATAGGTTCTCCTCCTGCATTGACATGGGCCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAGgtaaggaagacctggagagaatccagctagatgcacctaacagggcccac Alignment from GeneWise GGATGTGTCCTCTGCAGATTTAGTCATCAAAAAC-CAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggacagcctgtaaccctctatcactgtcgttgcagAGATGTGTCCTCTGCAGATTTAGTCATCAAGAACCCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGATAGGTTCTCCTCCTGCATTGACATGGGCCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAGgtaaggaagacctggagagaatccagctagatgcacctaacagggcccac #### Sptbn2_ID636_31 --> 1 - 0 Original Alignment gACTCAGTCAAAA-TTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG cccaagccagccaccggttaatgatcctttttatgcttattccttggcaggACTCAGTCAAAACTTGCCACCGTCGACACAAGCACCCAGTGTTAATGGGGTCTGCACAGACACCGACTCCTCACAGgtgagatcatgttgctggacatccctttcaacccagccagcctccagatc Alignment from CESAR gACTCAGTCAAAA-TTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG cccaagccagccaccggttaatgatcctttttatgcttattccttggcaggACTCAGTCAAAACTTGCCACCGTCGACACAAGCACCCAGTGTTAATGGGGTCTGCACAGACACCGACTCCTCACAGgtgagatcatgttgctggacatccctttcaacccagccagcctccagatc Alignment from Spaln_aa2Genome GACTCAGTCAAAATTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG cccaagccagccaccggttaatgatcctttttatgcttattccttggcaggactcagT------CAAAACTTGCCACCGTCGACACAAGCACCCAGTGTTAATGGGGTCTGCACAGACACCGACTCCTCACAGgtgagatcatgttgctggacatccctttcaacccagccagcctccagatc Alignment from Spaln_nt2Genome GACTCAGTCAAAA-TTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG cccaagccagccaccggttaatgatcctttttatgcttattccttggcagGACTCAGTCAAAACTTGCCACCGTCGACACAAGCACCCAGTGTTAATGGGGTCTGCACAGACACCGACTCCTCACAGgtgagatcatgttgctggacatccctttcaacccagccagcctccagatc Alignment from Pairagon GACTCAGTCAAAA-TTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG cccaagccagccaccggttaatgatcctttttatgcttattccttggcagGACTCAGTCAAAACTTGCCACCGTCGACACAAGCACCCAGTGTTAATGGGGTCTGCACAGACACCGACTCCTCACAGgtgagatcatgttgctggacatccctttcaacccagccagcctccagatc Alignment from Exonerate_protein2genome GACTCAGTCAAAA-TTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG cccaagccagccaccggttaatgatcctttttatgcttattccttggcagGACTCAGTCAAAACTTGCCACCGTCGACACAAGCACCCAGTGTTAATGGGGTCTGCACAGACACCGACTCCTCACAGgtgagatcatgttgctggacatccctttcaacccagccagcctccagatc Alignment from Exonerate_coding2genome GACTCAGTCAAAA-TTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG cccaagccagccaccggttaatgatcctttttatgcttattccttggcagGACTCAGTCAAAACTTGCCACCGTCGACACAAGCACCCAGTGTTAATGGGGTCTGCACAGACACCGACTCCTCACAGgtgagatcatgttgctggacatccctttcaacccagccagcctccagatc Alignment from GeneWise GACTCAGTCAAAATTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTCTGCACGGACACCGACTCCTCACAG cccaagccagccaccggttaatgatcctttttatgcttattccttggcaggactcagT------CAAAACTTGCCACCGTCGACACAAGCACCCAGTGTTAATGGGGTCTGCACAGACACCGACTCCTCACAGgtgagatcatgttgctggacatccctttcaacccagccagcctccagatc #### Sptbn2_ID638_33 --> 0 - 2 Original Alignment GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATG-CTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACag gggaaggataccatcgatgtcatcctttgctctgggtgtgttttttgcagGGATCTGGTACAGGAGATGAGTCCAGTGGGCCCCAGGGAGAGAGGCAGACCTTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAAAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTACCCACACGAGGACCAGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCCTGTGCCGCAAACAAGAAATGGAAGCCTTCAACAAGAAAGCTGCCAACaggtatgtatcctggctgtgctgtgctgaggcctgtggcctctcagattctg Alignment from CESAR GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATG-CTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACag gggaaggataccatcgatgtcatcctttgctctgggtgtgttttttgcagGGATCTGGTACAGGAGATGAGTCCAGTGGGCCCCAGGGAGAGAGGCAGACCTTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAAAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTACCCACACGAGGACCAGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCCTGTGCCGCAAACAAGAAATGGAAGCCTTCAACAAGAAAGCTGCCAACaggtatgtatcctggctgtgctgtgctgaggcctgtggcctctcagattctg Alignment from Spaln_aa2Genome GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATG-CTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG gggaaggataccatcgatgtcatcctttgctctgggtgtgttttttgcagGGATCTGGTACAGGAGATGAGTCCAGTGGGCCCCAGGGAGAGAGGCAGACCTTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAAAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTACCCACACGAGGACCAGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGcCTGTGCCGCAAACAAGAAATGGAAGCCTTCAACAAGAAAGCTGCCAACAGgtatgtatcctggctgtgctgtgctgaggcctgtggcctctcagattctg Alignment from Spaln_nt2Genome GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATG-CTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG gggaaggataccatcgatgtcatcctttgctctgggtgtgttttttgcagGGATCTGGTACAGGAGATGAGTCCAGTGGGCCCCAGGGAGAGAGGCAGACCTTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAAAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTACCCACACGAGGACCAGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCCTGTGCCGCAAACAAGAAATGGAAGCCTTCAACAAGAAAGCTGCCAACAGgtatgtatcctggctgtgctgtgctgaggcctgtggcctctcagattctg Alignment from Pairagon GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATG-CTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG gggaaggataccatcgatgtcatcctttgctctgggtgtgttttttgcagGGATCTGGTACAGGAGATGAGTCCAGTGGGCCCCAGGGAGAGAGGCAGACCTTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAAAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTACCCACACGAGGACCAGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCCTGTGCCGCAAACAAGAAATGGAAGCCTTCAACAAGAAAGCTGCCAACAGgtatgtatcctggctgtgctgtgctgaggcctgtggcctctcagattctg Alignment from Exonerate_protein2genome GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATG-CTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG gggaaggataccatcgatgtcatcctttgctctgggtgtgttttttgcagGGATCTGGTACAGGAGATGAGTCCAGTGGGCCCCAGGGAGAGAGGCAGACCTTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAAAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTACCCACACGAGGACCAGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCCTGTGCCGCAAACAAGAAATGGAAGCCTTCAACAAGAAAGCTGCCAACAGgtatgtatcctggctgtgctgtgctgaggcctgtggcctctcagattctg Alignment from Exonerate_coding2genome GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATG-CTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG gggaaggataccatcgatgtcatcctttgctctgggtgtgttttttgcagGGATCTGGTACAGGAGATGAGTCCAGTGGGCCCCAGGGAGAGAGGCAGACCTTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAAAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTACCCACACGAGGACCAGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCCTGTGCCGCAAACAAGAAATGGAAGCCTTCAACAAGAAAGCTGCCAACAGgtatgtatcctggctgtgctgtgctgaggcctgtggcctctcagattctg Alignment from GeneWise GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATG-CTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG gggaaggataccatcgatgtcatcctttgctctgggtgtgttttttgcagGGATCTGGTACAGGAGATGAGTCCAGTGGGCCCCAGGGAGAGAGGCAGACCTTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAAAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTACCCACACGAGGACCAGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCCTGTGCCGCAAACAAGAAATGGAAGCCTTCAACAAGAAAGCTGCCAACAGgtatgtatcctggctgtgctgtgctgaggcctgtggcctctcagattctg #### Sptbn2_ID639_34 --> 1 - 2 Original Alignment gTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCC-CAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGgg accaggttcctgaccctgaaggtttctggcttgctgtctctctaatgcaggTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTTGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCAGGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGgggtgagttttcaagctggggtaagtacctgggctcctcttgggttgggagg Alignment from CESAR gTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCC-CAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGgg accaggttcctgaccctgaaggtttctggcttgctgtctctctaatgcaggTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTTGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCAGGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGgggtgagttttcaagctggggtaagtacctgggctcctcttgggttgggagg Alignment from Spaln_aa2Genome GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCC-CAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGG accaggttcctgaccctgaaggtttctggcttgctgtctctctaatgcagGTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTTGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCAGGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCcCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGGgtgagttttcaagctggggtaagtacctgggctcctcttgggttgggagg Alignment from Spaln_nt2Genome GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCA-GGGCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGG accaggttcctgaccctgaaggtttctggcttgctgtctctctaatgcagGTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTTGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCAGGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGGgtgagttttcaagctggggtaagtacctgggctcctcttgggttgggagg Alignment from Pairagon GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGG-CCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGG accaggttcctgaccctgaaggtttctggcttgctgtctctctaatgcagGTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTTGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCAGGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGGgtgagttttcaagctggggtaagtacctgggctcctcttgggttgggagg Alignment from Exonerate_protein2genome GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCC-CAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGG accaggttcctgaccctgaaggtttctggcttgctgtctctctaatgcagGTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTTGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCAGGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGGgtgagttttcaagctggggtaagtacctgggctcctcttgggttgggagg Alignment from Exonerate_coding2genome GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGGGCC-CAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGG accaggttcctgaccctgaaggtttctggcttgctgtctctctaatgcagGTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTTGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCAGGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGGgtgagttttcaagctggggtaagtacctgggctcctcttgggttgggagg Alignment from GeneWise GTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTCGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCATGGAGAAGTGCCTGTCAGCCTGGCCAGG-GCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGG accaggttcctgaccctgaaggtttctggcttgctgtctctctaatgcagGTCATGGCAGAATGTGTACTGTGTACTTCGGCGTGGGAGCCTTGGCTTTTACAAGGATGCCAGGGCAGCTAGTGCAGGAGTGCCCTACCAGGGAGAAGTGCCTGTCAGCCTGGCCAGGGCCCCAGGGAAGTGTGGCCTTTGATTATCGGAAACGCAAACATGTTTTCAAGCTGGGgtgagttttcaagctggggtaagtacctgggctcctcttgggttgggagg #### Sptbn2_ID640_35 --> 1 - 0 Original Alignment cTTACAGGATGGCAAAGAA-TACCTATTCCAGGCCAAGGACGAG caacacaaaagacaggctcgtagctctcctgttatgtgcttgaattgcagcTTACAGGATGGTAAGGAACTACCTATTCCAGGCCAAGGACGAGgtgaggcctcccctgcccactgtggtctctcttgctgccggcactgggtt Alignment from CESAR cTTACAGGATGGCAAAGAA-TACCTATTCCAGGCCAAGGACGAG caacacaaaagacaggctcgtagctctcctgttatgtgcttgaattgcagcTTACAGGATGGTAAGGAACTACCTATTCCAGGCCAAGGACGAGgtgaggcctcccctgcccactgtggtctctcttgctgccggcactgggtt Alignment from Spaln_aa2Genome CTTACAGGATGGCAAAGAA-TACCTATTCCAGGCCAAGGACGAG caacacaaaagacaggctcgtagctctcctgttatgtgcttgaattgcagCTTACAGGATGGTAAGGAAcTACCTATTCCAGGCCAAGGACGAGgtgaggcctcccctgcccactgtggtctctcttgctgccggcactgggtt Alignment from Spaln_nt2Genome CTTACAGGATGGCAAAGAA-TACCTATTCCAGGCCAAGGACGAG caacacaaaagacaggctcgtagctctcctgttatgtgcttgaattgcagCTTACAGGATGGTAAGGAACTACCTATTCCAGGCCAAGGACGAGgtgaggcctcccctgcccactgtggtctctcttgctgccggcactgggtt Alignment from Pairagon CTTACAGGATGGCAAAGAA-TACCTATTCCAGGCCAAGGACGAG caacacaaaagacaggctcgtagctctcctgttatgtgcttgaattgcagCTTACAGGATGGTAAGGAACTACCTATTCCAGGCCAAGGACGAGgtgaggcctcccctgcccactgtggtctctcttgctgccggcactgggtt Alignment from Exonerate_protein2genome CTTACAGGATGGCAAAGAA-TACCTATTCCAGGCCAAGGACGAG caacacaaaagacaggctcgtagctctcctgttatgtgcttgaattgcagCTTACAGGATGGTAAGGAACTACCTATTCCAGGCCAAGGACGAGgtgaggcctcccctgcccactgtggtctctcttgctgccggcactgggtt Alignment from Exonerate_coding2genome CTTACAGGATGGCAAAGAA-TACCTATTCCAGGCCAAGGACGAG caacacaaaagacaggctcgtagctctcctgttatgtgcttgaattgcagCTTACAGGATGGTAAGGAACTACCTATTCCAGGCCAAGGACGAGgtgaggcctcccctgcccactgtggtctctcttgctgccggcactgggtt Alignment from GeneWise caacacaaaagacaggctcgtagctctcctgttatgtgcttgaattgcagcttacaggatggtaaggaactacctattccaggccaaggacgaggtgaggcctcccctgcccactgtggtctctcttgctgccggcactgggtt #### Ssh3_ID444_12 --> 1 - 2 Original Alignment aGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAA-CAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCag aggctacttgggttggaaaggcatggacagggattcggtgtgtgtttcagaGCACAGGGCACTCGAGTGCTAGTCCACTGCAAGACGGGTGTCAGCCGATCTGCTGCAACAGTACTAGCCTATGCCATGAAACCAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACACCCCAACCACAGCTTCCTGCGCCAGCTACGGACCTACCAAGGCATTCTGACTGCCaggtgggtgtggagaggacaagggcggtgttgtgtatactgaggggtggctc Alignment from CESAR aGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAA-CAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCag aggctacttgggttggaaaggcatggacagggattcggtgtgtgtttcagaGCACAGGGCACTCGAGTGCTAGTCCACTGCAAGACGGGTGTCAGCCGATCTGCTGCAACAGTACTAGCCTATGCCATGAAACCAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACACCCCAACCACAGCTTCCTGCGCCAGCTACGGACCTACCAAGGCATTCTGACTGCCaggtgggtgtggagaggacaagggcggtgttgtgtatactgaggggtggctc Alignment from Spaln_aa2Genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAA-CAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggctacttgggttggaaaggcatggacagggattcggtgtgtgtttcagAGCACAGGGCACTCGAGTGCTAGTCCACTGCAAGACGGGTGTCAGCCGATCTGCTGCAACAGTACTAGCCTATGCCATGAAAcCAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACACCCCAACCACAGCTTCCTGCGCCAGCTACGGACCTACCAAGGCATTCTGACTGCCAGgtgggtgtggagaggacaagggcggtgttgtgtatactgaggggtggctc Alignment from Spaln_nt2Genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATG-AAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggctacttgggttggaaaggcatggacagggattcggtgtgtgtttcagAGCACAGGGCACTCGAGTGCTAGTCCACTGCAAGACGGGTGTCAGCCGATCTGCTGCAACAGTACTAGCCTATGCCATGAAACCAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACACCCCAACCACAGCTTCCTGCGCCAGCTACGGACCTACCAAGGCATTCTGACTGCCAGgtgggtgtggagaggacaagggcggtgttgtgtatactgaggggtggctc Alignment from Pairagon AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAA-CAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggctacttgggttggaaaggcatggacagggattcggtgtgtgtttcagAGCACAGGGCACTCGAGTGCTAGTCCACTGCAAGACGGGTGTCAGCCGATCTGCTGCAACAGTACTAGCCTATGCCATGAAACCAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACACCCCAACCACAGCTTCCTGCGCCAGCTACGGACCTACCAAGGCATTCTGACTGCCAGgtgggtgtggagaggacaagggcggtgttgtgtatactgaggggtggctc Alignment from Exonerate_protein2genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAA-CAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggctacttgggttggaaaggcatggacagggattcggtgtgtgtttcagAGCACAGGGCACTCGAGTGCTAGTCCACTGCAAGACGGGTGTCAGCCGATCTGCTGCAACAGTACTAGCCTATGCCATGAAACCAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACACCCCAACCACAGCTTCCTGCGCCAGCTACGGACCTACCAAGGCATTCTGACTGCCAGgtgggtgtggagaggacaagggcggtgttgtgtatactgaggggtggctc Alignment from Exonerate_coding2genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAA-CAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggctacttgggttggaaaggcatggacagggattcggtgtgtgtttcagAGCACAGGGCACTCGAGTGCTAGTCCACTGCAAGACGGGTGTCAGCCGATCTGCTGCAACAGTACTAGCCTATGCCATGAAACCAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACACCCCAACCACAGCTTCCTGCGCCAGCTACGGACCTACCAAGGCATTCTGACTGCCAGgtgggtgtggagaggacaagggcggtgttgtgtatactgaggggtggctc Alignment from GeneWise AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATG-AAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggctacttgggttggaaaggcatggacagggattcggtgtgtgtttcagAGCACAGGGCACTCGAGTGCTAGTCCACTGCAAGACGGGTGTCAGCCGATCTGCTGCAACAGTACTAGCCTATGCCATGAAACCAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACACCCCAACCACAGCTTCCTGCGCCAGCTACGGACCTACCAAGGCATTCTGACTGCCAGgtgggtgtggagaggacaagggcggtgttgtgtatactgaggggtggctc #### Ssh3_ID449_7 --> 1 - 2 Original Alignment gGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTA-GGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGAca agagggaaccaagtatgactgagtgacttctgtatgctgtctttgtgcaggGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTCCGGTAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGAcagtaagtaccagggcaggggttggggcatggggacaaggaggaggaggagg Alignment from CESAR gGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTA-GGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGAca agagggaaccaagtatgactgagtgacttctgtatgctgtctttgtgcaggGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTCCGGTAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGAcagtaagtaccagggcaggggttggggcatggggacaaggaggaggaggagg Alignment from Spaln_aa2Genome GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTA-GGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA agagggaaccaagtatgactgagtgacttctgtatgctgtctttgtgcagGGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTCcGGTAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACAgtaagtaccagggcaggggttggggcatggggacaaggaggaggaggagg Alignment from Spaln_nt2Genome GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTA-GGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA agagggaaccaagtatgactgagtgacttctgtatgctgtctttgtgcagGGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTCCGGTAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACAgtaagtaccagggcaggggttggggcatggggacaaggaggaggaggagg Alignment from Pairagon GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCT-AGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA agagggaaccaagtatgactgagtgacttctgtatgctgtctttgtgcagGGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTCCGGTAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACAgtaagtaccagggcaggggttggggcatggggacaaggaggaggaggagg Alignment from Exonerate_protein2genome GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTA-GGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA agagggaaccaagtatgactgagtgacttctgtatgctgtctttgtgcagGGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTCCGGTAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACAgtaagtaccagggcaggggttggggcatggggacaaggaggaggaggagg Alignment from Exonerate_coding2genome GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTA-GGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA agagggaaccaagtatgactgagtgacttctgtatgctgtctttgtgcagGGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTCCGGTAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACAgtaagtaccagggcaggggttggggcatggggacaaggaggaggaggagg Alignment from GeneWise GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCT-CTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA agagggaaccaagtatgactgagtgacttctgtatgctgtctttgtgcagGGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTCCGGTAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACAgtaagtaccagggcaggggttggggcatggggacaaggaggaggaggagg #### Ssh3_ID450_6 --> 1 - 2 Original Alignment gGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTC-AAGCCTGTCTCTATCCAGACCATGtg atgaacaggtagcctggtatttggttccgtttttatctttttacttgcagaGGCTTAAGTGTGACATCTGGTGGTCAAAGTCGAATCTTCCAAGCCTGTCTCTATCCAGACCATGtggtaagtgctgcacagctgtaaccttggaccaggcacttaggtggcagcca Alignment from CESAR gGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTC-AAGCCTGTCTCTATCCAGACCATGtg atgaacaggtagcctggtatttggttccgtttttatctttttacttgcagaGGCTTAAGTGTGACATCTGGTGGTCAAAGTCGAATCTTCCAAGCCTGTCTCTATCCAGACCATGtggtaagtgctgcacagctgtaaccttggaccaggcacttaggtggcagcca Alignment from Spaln_aa2Genome GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTC-AAGCCTGTCTCTATCCAGACCATGTG atgaacaggtagcctggtatttggttccgtttttatctttttacttgcagAGGCTTAAGTGTGACATCTGGTGGTCAAAGTCGAATCTTCcAAGCCTGTCTCTATCCAGACCATGTGgtaagtgctgcacagctgtaaccttggaccaggcacttaggtggcagcca Alignment from Spaln_nt2Genome GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTT-CAAGCCTGTCTCTATCCAGACCATGTG atgaacaggtagcctggtatttggttccgtttttatctttttacttgcagAGGCTTAAGTGTGACATCTGGTGGTCAAAGTCGAATCTTCCAAGCCTGTCTCTATCCAGACCATGTGgtaagtgctgcacagctgtaaccttggaccaggcacttaggtggcagcca Alignment from Pairagon GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTT-CAAGCCTGTCTCTATCCAGACCATGTG atgaacaggtagcctggtatttggttccgtttttatctttttacttgcagAGGCTTAAGTGTGACATCTGGTGGTCAAAGTCGAATCTTCCAAGCCTGTCTCTATCCAGACCATGTGgtaagtgctgcacagctgtaaccttggaccaggcacttaggtggcagcca Alignment from Exonerate_protein2genome GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTC-AAGCCTGTCTCTATCCAGACCATGTG atgaacaggtagcctggtatttggttccgtttttatctttttacttgcagAGGCTTAAGTGTGACATCTGGTGGTCAAAGTCGAATCTTCCAAGCCTGTCTCTATCCAGACCATGTGgtaagtgctgcacagctgtaaccttggaccaggcacttaggtggcagcca Alignment from Exonerate_coding2genome GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTC-AAGCCTGTCTCTATCCAGACCATGTG atgaacaggtagcctggtatttggttccgtttttatctttttacttgcagAGGCTTAAGTGTGACATCTGGTGGTCAAAGTCGAATCTTCCAAGCCTGTCTCTATCCAGACCATGTGgtaagtgctgcacagctgtaaccttggaccaggcacttaggtggcagcca Alignment from GeneWise GGGCTTCAGTGTGACATCTGGTGGTCAAAGCCGAATCTTC-AAGCCTGTCTCTATCCAGACCATGTG atgaacaggtagcctggtatttggttccgtttttatctttttacttgcagAGGCTTAAGTGTGACATCTGGTGGTCAAAGTCGAATCTTCCAAGCCTGTCTCTATCCAGACCATGTGgtaagtgctgcacagctgtaaccttggaccaggcacttaggtggcagcca #### Ssh3_ID451_5 --> 1 - 2 Original Alignment tTCCCAC---------AGCTGCACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGAT-ACCCAGGTGTACCTGGACGGCGATgg gccaaggctgtaatgtgctggggaacaatgtttcccttctctcatttcagtTCCCACAGCTGTACCAGCTGCACCCTGGGTCTGGTCTTGCCCCTCTGGAGTGATCACCCAGGTGTACCTGGATGGAGATgggtaggtggctttctgtaggaacaggaggggaaggacaagaatgggtagat Alignment from CESAR tTCCCAC---------AGCTGCACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGAT-ACCCAGGTGTACCTGGACGGCGATgg gccaaggctgtaatgtgctggggaacaatgtttcccttctctcatttcagtTCCCACAGCTGTACCAGCTGCACCCTGGGTCTGGTCTTGCCCCTCTGGAGTGATCACCCAGGTGTACCTGGATGGAGATgggtaggtggctttctgtaggaacaggaggggaaggacaagaatgggtagat Alignment from Spaln_aa2Genome TTCCCACAGCTGCACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGAT-ACCCAGGTGTACCTGGACGGCGATGG gccaaggctgtaatgtgctggggaacaatgtttcccttctctcatttcagttcccacagCTGTACCAGCTGCACCCTGGGTCTGGTCTTGCCCCTCTGGAGTGATcACCCAGGTGTACCTGGATGGAGATGGgtaggtggctttctgtaggaacaggaggggaaggacaagaatgggtagat Alignment from Spaln_nt2Genome TTCCCACAGCTG---------CACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGAT-ACCCAGGTGTACCTGGACGGCGATGG gccaaggctgtaatgtgctggggaacaatgtttcccttctctcatttcagTTCCCACAGCTGTACCAGCTGCACCCTGGGTCTGGTCTTGCCCCTCTGGAGTGATCACCCAGGTGTACCTGGATGGAGATGGgtaggtggctttctgtaggaacaggaggggaaggacaagaatgggtagat Alignment from Pairagon TTCCCA---------CAGCTGCACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGAT-ACCCAGGTGTACCTGGACGGCGATGG gccaaggctgtaatgtgctggggaacaatgtttcccttctctcatttcagTTCCCACAGCTGTACCAGCTGCACCCTGGGTCTGGTCTTGCCCCTCTGGAGTGATCACCCAGGTGTACCTGGATGGAGATGGgtaggtggctttctgtaggaacaggaggggaaggacaagaatgggtagat Alignment from Exonerate_protein2genome TTCCCACAGCTGCACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGAT-ACCCAGGTGTACCTGGACGGCGATGG gccaaggctgtaatgtgctggggaacaatgtttcccttctctcatttcagttcccacagCTGTACCAGCTGCACCCTGGGTCTGGTCTTGCCCCTCTGGAGTGATCACCCAGGTGTACCTGGATGGAGATGGgtaggtggctttctgtaggaacaggaggggaaggacaagaatgggtagat Alignment from Exonerate_coding2genome TTCCCACAGCTGCACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGAT-ACCCAGGTGTACCTGGACGGCGATGG gccaaggctgtaatgtgctggggaacaatgtttcccttctctcatttcagttcccacagCTGTACCAGCTGCACCCTGGGTCTGGTCTTGCCCCTCTGGAGTGATCACCCAGGTGTACCTGGATGGAGATGGgtaggtggctttctgtaggaacaggaggggaaggacaagaatgggtagat Alignment from GeneWise TTCCCACAGCTGCACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGAT-ACCCAGGTGTACCTGGACGGCGATGG gccaaggctgtaatgtgctggggaacaatgtttcccttctctcatttcagttcccacagCTGTACCAGCTGCACCCTGGGTCTGGTCTTGCCCCTCTGGAGTGATCACCCAGGTGTACCTGGATGGAGATGGgtaggtggctttctgtaggaacaggaggggaaggacaagaatgggtagat #### Stip1_ID1988_13 --> 0 - 2 Original Alignment GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGC-CCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCga gtgagccatatagtgttgacatgcccccaggactggatctattcccacagGAAGCAGCAGATGGTTACCAACGCTGCATGATGGCACAGTACAACAGACATGACAGCCCCTGAGGATGTGAAGCGGCAGGCCATGGCCGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCgagtatgttgagtggggaagtgagagagaattttatctttctttcagtgtat Alignment from CESAR GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGC-CCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCga gtgagccatatagtgttgacatgcccccaggactggatctattcccacagGAAGCAGCAGATGGTTACCAACGCTGCATGATGGCACAGTACAACAGACATGACAGCCCCTGAGGATGTGAAGCGGCAGGCCATGGCCGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCgagtatgttgagtggggaagtgagagagaattttatctttctttcagtgtat Alignment from Spaln_aa2Genome GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGC-CCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA gtgagccatatagtgttgacatgcccccaggactggatctattcccacagGAAGCAGCAGATGGTTACCAACGCTGCATGATGGCACAGTACAACAGACATGACAGCcCCTGAGGATGTGAAGCGGCAGGCCATGGCCGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGAgtatgttgagtggggaagtgagagagaattttatctttctttcagtgtat Alignment from Spaln_nt2Genome GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAG-CCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA gtgagccatatagtgttgacatgcccccaggactggatctattcccacagGAAGCAGCAGATGGTTACCAACGCTGCATGATGGCACAGTACAACAGACATGACAGCCCCTGAGGATGTGAAGCGGCAGGCCATGGCCGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGAgtatgttgagtggggaagtgagagagaattttatctttctttcagtgtat Alignment from Pairagon GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAG-CCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA gtgagccatatagtgttgacatgcccccaggactggatctattcccacagGAAGCAGCAGATGGTTACCAACGCTGCATGATGGCACAGTACAACAGACATGACAGCCCCTGAGGATGTGAAGCGGCAGGCCATGGCCGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGAgtatgttgagtggggaagtgagagagaattttatctttctttcagtgtat Alignment from Exonerate_protein2genome GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGC-CCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA gtgagccatatagtgttgacatgcccccaggactggatctattcccacagGAAGCAGCAGATGGTTACCAACGCTGCATGATGGCACAGTACAACAGACATGACAGCCCCTGAGGATGTGAAGCGGCAGGCCATGGCCGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGAgtatgttgagtggggaagtgagagagaattttatctttctttcagtgtat Alignment from Exonerate_coding2genome GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGC-CCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA gtgagccatatagtgttgacatgcccccaggactggatctattcccacagGAAGCAGCAGATGGTTACCAACGCTGCATGATGGCACAGTACAACAGACATGACAGCCCCTGAGGATGTGAAGCGGCAGGCCATGGCCGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGAgtatgttgagtggggaagtgagagagaattttatctttctttcagtgtat Alignment from GeneWise GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGAT-AGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA gtgagccatatagtgttgacatgcccccaggactggatctattcccacagGAAGCAGCAGATGGTTACCAACGCTGCATGATGGCACAGTACAACAGACATGACAGCCCCTGAGGATGTGAAGCGGCAGGCCATGGCCGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGAgtatgttgagtggggaagtgagagagaattttatctttctttcagtgtat #### Stip1_ID1989_12 --> 2 - 0 Original Alignment tcAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCC-ATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG gattgtggtcaggtaatactaagttgctcatagccccctcctctctccagtcAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAGgtacactgctgttggcctataacatacatccctgttggcttctcctttgg Alignment from CESAR tcAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCC-ATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG gattgtggtcaggtaatactaagttgctcatagccccctcctctctccagtcAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAGgtacactgctgttggcctataacatacatccctgttggcttctcctttgg Alignment from Spaln_aa2Genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCC-ATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG gattgtggtcaggtaatactaagttgctcatagccccctcctctctccagTCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCcATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAGgtacactgctgttggcctataacatacatccctgttggcttctcctttgg Alignment from Spaln_nt2Genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAG-CCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG gattgtggtcaggtaatactaagttgctcatagccccctcctctctccagTCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAGgtacactgctgttggcctataacatacatccctgttggcttctcctttgg Alignment from Pairagon TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAG-CCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG gattgtggtcaggtaatactaagttgctcatagccccctcctctctccagTCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAGgtacactgctgttggcctataacatacatccctgttggcttctcctttgg Alignment from Exonerate_protein2genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCC-ATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG gattgtggtcaggtaatactaagttgctcatagccccctcctctctccagTCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAGgtacactgctgttggcctataacatacatccctgttggcttctcctttgg Alignment from Exonerate_coding2genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCC-ATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG gattgtggtcaggtaatactaagttgctcatagccccctcctctctccagTCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAGgtacactgctgttggcctataacatacatccctgttggcttctcctttgg Alignment from GeneWise TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAA-GCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG gattgtggtcaggtaatactaagttgctcatagccccctcctctctccagTCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAGgtacactgctgttggcctataacatacatccctgttggcttctcctttgg #### Stx3_ID3299_7 --> 2 - 0 Original Alignment ctGGCAAGAAGACAACAGAT-GAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG agcagagttgtacgttgagcttatatttcgtgagtgttttctccttacagctGGCAAGAAGACAACAGATCGAGGAGCTAGAGGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGGgtgagtaacatcagcacttgcttcagtggacaggaatgagcccatgtggg Alignment from CESAR ctGGCAAGAAGACAACAGAT-GAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG agcagagttgtacgttgagcttatatttcgtgagtgttttctccttacagctGGCAAGAAGACAACAGATCGAGGAGCTAGAGGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGGgtgagtaacatcagcacttgcttcagtggacaggaatgagcccatgtggg Alignment from Spaln_aa2Genome CTGGCAAGAAGACAACAGAT-GAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG agcagagttgtacgttgagcttatatttcgtgagtgttttctccttacagCTGGCAAGAAGACAACAGATcGAGGAGCTAGAGGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGGgtgagtaacatcagcacttgcttcagtggacaggaatgagcccatgtggg Alignment from Spaln_nt2Genome CTGGCAAGAAGACAACAGAT-GAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG agcagagttgtacgttgagcttatatttcgtgagtgttttctccttacagCTGGCAAGAAGACAACAGATCGAGGAGCTAGAGGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGGgtgagtaacatcagcacttgcttcagtggacaggaatgagcccatgtggg Alignment from Pairagon CTGGCAAGAAGACAACAGAT-GAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG agcagagttgtacgttgagcttatatttcgtgagtgttttctccttacagCTGGCAAGAAGACAACAGATCGAGGAGCTAGAGGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGGgtgagtaacatcagcacttgcttcagtggacaggaatgagcccatgtggg Alignment from Exonerate_protein2genome CTGGCAAGAAGACAACAGAT-GAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG agcagagttgtacgttgagcttatatttcgtgagtgttttctccttacagCTGGCAAGAAGACAACAGATCGAGGAGCTAGAGGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGGgtgagtaacatcagcacttgcttcagtggacaggaatgagcccatgtggg Alignment from Exonerate_coding2genome CTGGCAAGAAGACAACAGAT-GAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG agcagagttgtacgttgagcttatatttcgtgagtgttttctccttacagCTGGCAAGAAGACAACAGATCGAGGAGCTAGAGGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGGgtgagtaacatcagcacttgcttcagtggacaggaatgagcccatgtggg Alignment from GeneWise CAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG agcagagttgtacgttgagcttatatttcgtgagtgttttctccttacagctggcaagAAGACAACAGATC---GAGGAGCTAGAGGAGATGTTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGGgtgagtaacatcagcacttgcttcagtggacaggaatgagcccatgtggg #### Stx5a_ID2330_2 --> 0 - 2 Original Alignment AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAG-TGCAGTGAATTTACCCTCATGGCCag agggtaactagtgacagtgactaaagtattcttgctgtcctcctctgcagAATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGCTGCAGTGAATTTACCCTTATGGCCaggtacagtggaggggtgttgggatgggctgatatagtgtcttgagtgtatc Alignment from CESAR AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAG-TGCAGTGAATTTACCCTCATGGCCag agggtaactagtgacagtgactaaagtattcttgctgtcctcctctgcagAATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGCTGCAGTGAATTTACCCTTATGGCCaggtacagtggaggggtgttgggatgggctgatatagtgtcttgagtgtatc Alignment from Spaln_aa2Genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAG-TGCAGTGAATTTACCCTCATGGCCAG agggtaactagtgacagtgactaaagtattcttgctgtcctcctctgcagAATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGcTGCAGTGAATTTACCCTTATGGCCAGgtacagtggaggggtgttgggatgggctgatatagtgtcttgagtgtatc Alignment from Spaln_nt2Genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAG-TGCAGTGAATTTACCCTCATGGCCAG agggtaactagtgacagtgactaaagtattcttgctgtcctcctctgcagAATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGCTGCAGTGAATTTACCCTTATGGCCAGgtacagtggaggggtgttgggatgggctgatatagtgtcttgagtgtatc Alignment from Pairagon AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAG-TGCAGTGAATTTACCCTCATGGCCAG agggtaactagtgacagtgactaaagtattcttgctgtcctcctctgcagAATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGCTGCAGTGAATTTACCCTTATGGCCAGgtacagtggaggggtgttgggatgggctgatatagtgtcttgagtgtatc Alignment from Exonerate_protein2genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAG-TGCAGTGAATTTACCCTCATGGCCAG agggtaactagtgacagtgactaaagtattcttgctgtcctcctctgcagAATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGCTGCAGTGAATTTACCCTTATGGCCAGgtacagtggaggggtgttgggatgggctgatatagtgtcttgagtgtatc Alignment from Exonerate_coding2genome AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACA-GTGCAGTGAATTTACCCTCATGGCCAG agggtaactagtgacagtgactaaagtattcttgctgtcctcctctgcagAATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGCTGCAGTGAATTTACCCTTATGGCCAGgtacagtggaggggtgttgggatgggctgatatagtgtcttgagtgtatc Alignment from GeneWise AATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGA-CAGTGCAGTGAATTTACCCTCATGGCCAG agggtaactagtgacagtgactaaagtattcttgctgtcctcctctgcagAATGGAATCCAAACAAGCAAACCGGCTCTGCACGCAGCCCGACAGCTGCAGTGAATTTACCCTTATGGCCAGgtacagtggaggggtgttgggatgggctgatatagtgtcttgagtgtatc #### Sufu_ID9897_5 --> 0 - 2 Original Alignment ATTGTTGGTGTCTGCACTGAGGAGTTACATTCAGCCCAACAG-TGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCat aagcgcagatagttcgagggatggacatttgtcaacccaaactcttctagATTGTTGGTGTCTGCACTGAGGAGTTACATTCAGCACAACAGCTGGAATGGACAGGGCATCCTGGAACTACTACGGACAGTGCCCatgtaaggacatgtccccgtaaagtggaggcctggaccctttgtctttgggg Alignment from CESAR ATTGTTGGTGTCTGCACTGAGGAGTTACATTCAGCCCAACAG-TGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCat aagcgcagatagttcgagggatggacatttgtcaacccaaactcttctagATTGTTGGTGTCTGCACTGAGGAGTTACATTCAGCACAACAGCTGGAATGGACAGGGCATCCTGGAACTACTACGGACAGTGCCCatgtaaggacatgtccccgtaaagtggaggcctggaccctttgtctttgggg Alignment from Spaln_aa2Genome ATTGTTGGTGTCTGCACTGAGGAGTTACATTCAGCCCAACAG-TGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCAT aagcgcagatagttcgagggatggacatttgtcaacccaaactcttctagATTGTTGGTGTCTGCACTGAGGAGTTACATTCAGCACAACAGcTGGAATGGACAGGGCATCCTGGAACTACTACGGACAGTGCCCATgtaaggacatgtccccgtaaagtggaggcctggaccctttgtctttgggg Alignment from Spaln_nt2Genome ATTGTTGGTGTCTGCACTGAGGAGTTACATTCAGCCCAACAG-TGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCAT aagcgcagatagttcgagggatggacatttgtcaacccaaactcttctagATTGTTGGTGTCTGCACTGAGGAGTTACATTCAGCACAACAGCTGGAATGGACAGGGCATCCTGGAACTACTACGGACAGTGCCCATgtaaggacatgtccccgtaaagtggaggcctggaccctttgtctttgggg Alignment from Pairagon ATTGTTGGTGTCTGCACTGAGGAGTTACATTCAGCCCAACAG-TGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCAT aagcgcagatagttcgagggatggacatttgtcaacccaaactcttctagATTGTTGGTGTCTGCACTGAGGAGTTACATTCAGCACAACAGCTGGAATGGACAGGGCATCCTGGAACTACTACGGACAGTGCCCATgtaaggacatgtccccgtaaagtggaggcctggaccctttgtctttgggg Alignment from Exonerate_protein2genome ATTGTTGGTGTCTGCACTGAGGAGTTACATTCAGCCCAACAG-TGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCAT aagcgcagatagttcgagggatggacatttgtcaacccaaactcttctagATTGTTGGTGTCTGCACTGAGGAGTTACATTCAGCACAACAGCTGGAATGGACAGGGCATCCTGGAACTACTACGGACAGTGCCCATgtaaggacatgtccccgtaaagtggaggcctggaccctttgtctttgggg Alignment from Exonerate_coding2genome ATTGTTGGTGTCTGCACTGAGGAGTTACATTCAGCCCAACAG-TGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCAT aagcgcagatagttcgagggatggacatttgtcaacccaaactcttctagATTGTTGGTGTCTGCACTGAGGAGTTACATTCAGCACAACAGCTGGAATGGACAGGGCATCCTGGAACTACTACGGACAGTGCCCATgtaaggacatgtccccgtaaagtggaggcctggaccctttgtctttgggg Alignment from GeneWise ATTGTTGGTGTCTGCACTGAGGAGTTACATTCAGCCCAA-CAGTGGAACGGGCAGGGCATCCTGGAACTACTACGGACAGTGCCCAT aagcgcagatagttcgagggatggacatttgtcaacccaaactcttctagATTGTTGGTGTCTGCACTGAGGAGTTACATTCAGCACAACAGCTGGAATGGACAGGGCATCCTGGAACTACTACGGACAGTGCCCATgtaaggacatgtccccgtaaagtggaggcctggaccctttgtctttgggg #### Syvn1_ID1385_4 --> 0 - 1 Original Alignment ATGGAACGCAGCCCCAACATC-TCCTGGCTCTTCCACTGCCGCATCGTCt ggggtgtggggcgcccccaaccatcttgccttttcctcatttcccaacagATGGAACGTAGCCCCAACATCCTCCTGGCTCTTCCACTGCCGCATTGTCtgtaagtgatactcgatactcattgaagctgtgggggtgacttgtttgagg Alignment from CESAR ATGGAACGCAGCCCCAACATC-TCCTGGCTCTTCCACTGCCGCATCGTCt ggggtgtggggcgcccccaaccatcttgccttttcctcatttcccaacagATGGAACGTAGCCCCAACATCCTCCTGGCTCTTCCACTGCCGCATTGTCtgtaagtgatactcgatactcattgaagctgtgggggtgacttgtttgagg Alignment from Spaln_aa2Genome ATGGAACGCAGCCCCAACATC-TCCTGGCTCTTCCACTGCCGCATCGTCT ggggtgtggggcgcccccaaccatcttgccttttcctcatttcccaacagATGGAACGTAGCCCCAACATCcTCCTGGCTCTTCCACTGCCGCATTGTCTgtaagtgatactcgatactcattgaagctgtgggggtgacttgtttgagg Alignment from Spaln_nt2Genome ATGGAACGCAGCCCCAACAT-CTCCTGGCTCTTCCACTGCCGCATCGTCT ggggtgtggggcgcccccaaccatcttgccttttcctcatttcccaacagATGGAACGTAGCCCCAACATCCTCCTGGCTCTTCCACTGCCGCATTGTCTgtaagtgatactcgatactcattgaagctgtgggggtgacttgtttgagg Alignment from Pairagon ATGGAACGCAGCCCCAACAT-CTCCTGGCTCTTCCACTGCCGCATCGTCT ggggtgtggggcgcccccaaccatcttgccttttcctcatttcccaacagATGGAACGTAGCCCCAACATCCTCCTGGCTCTTCCACTGCCGCATTGTCTgtaagtgatactcgatactcattgaagctgtgggggtgacttgtttgagg Alignment from Exonerate_protein2genome ATGGAACGCAGCCCCAACATC-TCCTGGCTCTTCCACTGCCGCATCGTCT ggggtgtggggcgcccccaaccatcttgccttttcctcatttcccaacagATGGAACGTAGCCCCAACATCCTCCTGGCTCTTCCACTGCCGCATTGTCTgtaagtgatactcgatactcattgaagctgtgggggtgacttgtttgagg Alignment from Exonerate_coding2genome ATGGAACGCAGCCCCAACATC-TCCTGGCTCTTCCACTGCCGCATCGTCT ggggtgtggggcgcccccaaccatcttgccttttcctcatttcccaacagATGGAACGTAGCCCCAACATCCTCCTGGCTCTTCCACTGCCGCATTGTCTgtaagtgatactcgatactcattgaagctgtgggggtgacttgtttgagg Alignment from GeneWise ggggtgtggggcgcccccaaccatcttgccttttcctcatttcccaacagatggaacgtagccccaacatcctcctggctcttccactgccgcattgtctgtaagtgatactcgatactcattgaagctgtgggggtgacttgtttgagg #### Syvn1_ID1386_5 --> 2 - 0 Original Alignment ctCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGC-CACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG ttctcaggcctctgctgacctcaattcctaactctgcacctctctttcagctCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTTGTCAGCCCATGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTGgtaaggctggcttgggggaagaagcgagctcgtcctgtgtgtgctgtgag Alignment from CESAR ctCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGC-CACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG ttctcaggcctctgctgacctcaattcctaactctgcacctctctttcagctCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTTGTCAGCCCATGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTGgtaaggctggcttgggggaagaagcgagctcgtcctgtgtgtgctgtgag Alignment from Spaln_aa2Genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGC-CACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG ttctcaggcctctgctgacctcaattcctaactctgcacctctctttcagCTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTTGTCAGCcCATGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTGgtaaggctggcttgggggaagaagcgagctcgtcctgtgtgtgctgtgag Alignment from Spaln_nt2Genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAG-CCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG ttctcaggcctctgctgacctcaattcctaactctgcacctctctttcagCTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTTGTCAGCCCATGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTGgtaaggctggcttgggggaagaagcgagctcgtcctgtgtgtgctgtgag Alignment from Pairagon CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAG-CCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG ttctcaggcctctgctgacctcaattcctaactctgcacctctctttcagCTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTTGTCAGCCCATGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTGgtaaggctggcttgggggaagaagcgagctcgtcctgtgtgtgctgtgag Alignment from Exonerate_protein2genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGC-CACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG ttctcaggcctctgctgacctcaattcctaactctgcacctctctttcagCTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTTGTCAGCCCATGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTGgtaaggctggcttgggggaagaagcgagctcgtcctgtgtgtgctgtgag Alignment from Exonerate_coding2genome CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGC-CACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG ttctcaggcctctgctgacctcaattcctaactctgcacctctctttcagCTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTTGTCAGCCCATGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTGgtaaggctggcttgggggaagaagcgagctcgtcctgtgtgtgctgtgag Alignment from GeneWise CTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTC-AGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG ttctcaggcctctgctgacctcaattcctaactctgcacctctctttcagCTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTTGTCAGCCCATGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTGgtaaggctggcttgggggaagaagcgagctcgtcctgtgtgtgctgtgag #### Syvn1_ID1387_6 --> 0 - 1 Original Alignment TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATC-AAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAg agagcaaggggaagctggtactcacatctcacaatttctgctccctgtagTACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCCAAGTATGTGCTGCACTCTGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAggtaagcgattcccaggctcctttcagtccacagcagcatccgatggtgtg Alignment from CESAR TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATC-AAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAg agagcaaggggaagctggtactcacatctcacaatttctgctccctgtagTACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCCAAGTATGTGCTGCACTCTGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAggtaagcgattcccaggctcctttcagtccacagcagcatccgatggtgtg Alignment from Spaln_aa2Genome TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATC-AAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcaaggggaagctggtactcacatctcacaatttctgctccctgtagTACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCcAAGTATGTGCTGCACTCTGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtaagcgattcccaggctcctttcagtccacagcagcatccgatggtgtg Alignment from Spaln_nt2Genome TACGCCATTCTGATGACCATGGTGCTTACCATCTTCAT-CAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcaaggggaagctggtactcacatctcacaatttctgctccctgtagTACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCCAAGTATGTGCTGCACTCTGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtaagcgattcccaggctcctttcagtccacagcagcatccgatggtgtg Alignment from Pairagon TACGCCATTCTGATGACCATGGTGCTTACCATCTTCAT-CAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcaaggggaagctggtactcacatctcacaatttctgctccctgtagTACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCCAAGTATGTGCTGCACTCTGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtaagcgattcccaggctcctttcagtccacagcagcatccgatggtgtg Alignment from Exonerate_protein2genome TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATC-AAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcaaggggaagctggtactcacatctcacaatttctgctccctgtagTACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCCAAGTATGTGCTGCACTCTGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtaagcgattcccaggctcctttcagtccacagcagcatccgatggtgtg Alignment from Exonerate_coding2genome TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATC-AAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcaaggggaagctggtactcacatctcacaatttctgctccctgtagTACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCCAAGTATGTGCTGCACTCTGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtaagcgattcccaggctcctttcagtccacagcagcatccgatggtgtg Alignment from GeneWise TACGCCATTCTGATGACCATGGTGCTTACCATCTTC-ATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcaaggggaagctggtactcacatctcacaatttctgctccctgtagTACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCCAAGTATGTGCTGCACTCTGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtaagcgattcccaggctcctttcagtccacagcagcatccgatggtgtg #### Syvn1_ID1388_7 --> 2 - 2 Original Alignment gcTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTC-TTTGCCATTAGGCCCATGTACCTGGCCATGag ggtgtgtctgccagccctgcggtcagctcagcccatgtcttcttcatcaggcTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCCTTTGCCATTAGGCCCATGTACCTGGCCATGaggtaagactggccttgtcccttacttcctcagactggtcactcccatgtct Alignment from CESAR gcTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTC-TTTGCCATTAGGCCCATGTACCTGGCCATGag ggtgtgtctgccagccctgcggtcagctcagcccatgtcttcttcatcaggcTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCCTTTGCCATTAGGCCCATGTACCTGGCCATGaggtaagactggccttgtcccttacttcctcagactggtcactcccatgtct Alignment from Spaln_aa2Genome GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTC-TTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtgtctgccagccctgcggtcagctcagcccatgtcttcttcatcagGCTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCcTTTGCCATTAGGCCCATGTACCTGGCCATGAGgtaagactggccttgtcccttacttcctcagactggtcactcccatgtct Alignment from Spaln_nt2Genome GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACT-CTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtgtctgccagccctgcggtcagctcagcccatgtcttcttcatcagGCTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCCTTTGCCATTAGGCCCATGTACCTGGCCATGAGgtaagactggccttgtcccttacttcctcagactggtcactcccatgtct Alignment from Pairagon GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACT-CTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtgtctgccagccctgcggtcagctcagcccatgtcttcttcatcagGCTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCCTTTGCCATTAGGCCCATGTACCTGGCCATGAGgtaagactggccttgtcccttacttcctcagactggtcactcccatgtct Alignment from Exonerate_protein2genome GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTC-TTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtgtctgccagccctgcggtcagctcagcccatgtcttcttcatcagGCTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCCTTTGCCATTAGGCCCATGTACCTGGCCATGAGgtaagactggccttgtcccttacttcctcagactggtcactcccatgtct Alignment from Exonerate_coding2genome GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTC-TTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtgtctgccagccctgcggtcagctcagcccatgtcttcttcatcagGCTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCCTTTGCCATTAGGCCCATGTACCTGGCCATGAGgtaagactggccttgtcccttacttcctcagactggtcactcccatgtct Alignment from GeneWise GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCA-CTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtgtctgccagccctgcggtcagctcagcccatgtcttcttcatcagGCTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCCTTTGCCATTAGGCCCATGTACCTGGCCATGAGgtaagactggccttgtcccttacttcctcagactggtcactcccatgtct #### Syvn1_ID1392_11 --> 2 - 1 Original Alignment tcCCCCAGGGCCTCCTGCCT-CCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAg ggtgagactgacagcccagcctcttctctctctctctttttatcctttagtcCCCCAGGGCCTCCTGCCTCCCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCAATGGGTCCCTTTCCACCTGTCCCACCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAggtatgtcctgtgcatgccagggtagctggggggtggcagttggatctgga Alignment from CESAR tcCCCCAGGGCCTCCTGCCT-CCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAg ggtgagactgacagcccagcctcttctctctctctctttttatcctttagtcCCCCAGGGCCTCCTGCCTCCCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCAATGGGTCCCTTTCCACCTGTCCCACCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAggtatgtcctgtgcatgccagggtagctggggggtggcagttggatctgga Alignment from Spaln_aa2Genome TCCCCCAGGGCCTCCTGCCT-CCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG ggtgagactgacagcccagcctcttctctctctctctttttatcctttagTCCCCCAGGGCCTCCTGCCTcCCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCAATGGGTCCCTTTCCACCTGTCCCACCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAGgtatgtcctgtgcatgccagggtagctggggggtggcagttggatctgga Alignment from Spaln_nt2Genome TCCCCCAGGGCCTCCTGCCT-CCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG ggtgagactgacagcccagcctcttctctctctctctttttatcctttagTCCCCCAGGGCCTCCTGCCTCCCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCAATGGGTCCCTTTCCACCTGTCCCACCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAGgtatgtcctgtgcatgccagggtagctggggggtggcagttggatctgga Alignment from Pairagon TCCCCCAGGGCCTCCTGCCT-CCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG ggtgagactgacagcccagcctcttctctctctctctttttatcctttagTCCCCCAGGGCCTCCTGCCTCCCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCAATGGGTCCCTTTCCACCTGTCCCACCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAGgtatgtcctgtgcatgccagggtagctggggggtggcagttggatctgga Alignment from Exonerate_protein2genome TCCCCCAGGGCCTCCTGCCT-CCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG ggtgagactgacagcccagcctcttctctctctctctttttatcctttagTCCCCCAGGGCCTCCTGCCTCCCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCAATGGGTCCCTTTCCACCTGTCCCACCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAGgtatgtcctgtgcatgccagggtagctggggggtggcagttggatctgga Alignment from Exonerate_coding2genome TCCCCCAGGGCCTCCTGCCT-CCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG ggtgagactgacagcccagcctcttctctctctctctttttatcctttagTCCCCCAGGGCCTCCTGCCTCCCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCAATGGGTCCCTTTCCACCTGTCCCACCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAGgtatgtcctgtgcatgccagggtagctggggggtggcagttggatctgga Alignment from GeneWise TCCCCCAGGGCCTCCTGCCTCCT-TTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG ggtgagactgacagcccagcctcttctctctctctctttttatcctttagTCCCCCAGGGCCTCCTGCCTCCCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCAATGGGTCCCTTTCCACCTGTCCCACCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAGgtatgtcctgtgcatgccagggtagctggggggtggcagttggatctgga #### Syvn1_ID1395_14 --> 1 - 1 Original Alignment gCCCCCCAGGCCA-GCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTg ggtgcagcccagaaggccaaggtcgggcgcggtccctttctgtccttcaggCCCCCAAGGCCACGCTACTTCAGTGAACCCCACTGAAGAAACTGCGTCTACTGTGGTATCTGCTGCGCCTTCCACTAGTGCCCCGAGCTCTGAGGCTCCAACCCCATCTCCAGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTggtgagtgagcaaaacaataggcacagaacatctaggggtgggatgaaggg Alignment from CESAR gCCCCCCAGGCCA-GCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTg ggtgcagcccagaaggccaaggtcgggcgcggtccctttctgtccttcaggCCCCCAAGGCCACGCTACTTCAGTGAACCCCACTGAAGAAACTGCGTCTACTGTGGTATCTGCTGCGCCTTCCACTAGTGCCCCGAGCTCTGAGGCTCCAACCCCATCTCCAGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTggtgagtgagcaaaacaataggcacagaacatctaggggtgggatgaaggg Alignment from Spaln_aa2Genome GCCCCCCAGGCCA-GCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG ggtgcagcccagaaggccaaggtcgggcgcggtccctttctgtccttcagGCCCCCAAGGCCAcGCTACTTCAGTGAACCCCACTGAAGAAACTGCGTCTACTGTGGTATCTGCTGCGCCTTCCACTAGTGCCCCGAGCTCTGAGGCTCCAACCCCATCTCCAGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtgagtgagcaaaacaataggcacagaacatctaggggtgggatgaaggg Alignment from Spaln_nt2Genome GCCCCCCAGGCCA-GCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG ggtgcagcccagaaggccaaggtcgggcgcggtccctttctgtccttcagGCCCCCAAGGCCACGCTACTTCAGTGAACCCCACTGAAGAAACTGCGTCTACTGTGGTATCTGCTGCGCCTTCCACTAGTGCCCCGAGCTCTGAGGCTCCAACCCCATCTCCAGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtgagtgagcaaaacaataggcacagaacatctaggggtgggatgaaggg Alignment from Pairagon GCCCCCCAGGCCA-GCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG ggtgcagcccagaaggccaaggtcgggcgcggtccctttctgtccttcagGCCCCCAAGGCCACGCTACTTCAGTGAACCCCACTGAAGAAACTGCGTCTACTGTGGTATCTGCTGCGCCTTCCACTAGTGCCCCGAGCTCTGAGGCTCCAACCCCATCTCCAGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtgagtgagcaaaacaataggcacagaacatctaggggtgggatgaaggg Alignment from Exonerate_protein2genome GCCCCCCAGGCCA-GCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG ggtgcagcccagaaggccaaggtcgggcgcggtccctttctgtccttcagGCCCCCAAGGCCACGCTACTTCAGTGAACCCCACTGAAGAAACTGCGTCTACTGTGGTATCTGCTGCGCCTTCCACTAGTGCCCCGAGCTCTGAGGCTCCAACCCCATCTCCAGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtgagtgagcaaaacaataggcacagaacatctaggggtgggatgaaggg Alignment from Exonerate_coding2genome GCCCCCCAGGCCA-GCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG ggtgcagcccagaaggccaaggtcgggcgcggtccctttctgtccttcagGCCCCCAAGGCCACGCTACTTCAGTGAACCCCACTGAAGAAACTGCGTCTACTGTGGTATCTGCTGCGCCTTCCACTAGTGCCCCGAGCTCTGAGGCTCCAACCCCATCTCCAGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtgagtgagcaaaacaataggcacagaacatctaggggtgggatgaaggg Alignment from GeneWise ----------------------------GGGCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG ggtgcagcccagaaggccaagGTCGGGCGCGGTCCCTTTCTGTCCTTCAGGCCCCCAAGGCCACGCTACTTCAGTGAACCCCACTGAAGAAACTGCGTCTACTGTGGTATCTGCTGCGCCTTCCACTAGTGCCCCGAGCTCTGAGGCTCCAACCCCATCTCCAGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtgagtgagcaaaacaataggcacagaacatctaggggtgggatgaaggg #### Tbc1d10c_ID398_6 --> 0 - 0 Original Alignment GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTAC-CTCCCTGGCTACTATGGGCCCCACATG caattccttaatgagtactcataggcctttctttcctcttgtctccatagGAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCCTCCCTGGCTACTATGGGCCCCACATGgttagaggctgggttgacaggtggaagatggacagtgggacatctgaagc Alignment from CESAR GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTAC-CTCCCTGGCTACTATGGGCCCCACATG caattccttaatgagtactcataggcctttctttcctcttgtctccatagGAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCCTCCCTGGCTACTATGGGCCCCACATGgttagaggctgggttgacaggtggaagatggacagtgggacatctgaagc Alignment from Spaln_aa2Genome GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTAC-CTCCCTGGCTACTATGGGCCCCACATG caattccttaatgagtactcataggcctttctttcctcttgtctccatagGAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACcCTCCCTGGCTACTATGGGCCCCACATGgttagaggctgggttgacaggtggaagatggacagtgggacatctgaagc Alignment from Spaln_nt2Genome GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTA-CCTCCCTGGCTACTATGGGCCCCACATG caattccttaatgagtactcataggcctttctttcctcttgtctccatagGAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCCTCCCTGGCTACTATGGGCCCCACATGgttagaggctgggttgacaggtggaagatggacagtgggacatctgaagc Alignment from Pairagon GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTA-CCTCCCTGGCTACTATGGGCCCCACATG caattccttaatgagtactcataggcctttctttcctcttgtctccatagGAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCCTCCCTGGCTACTATGGGCCCCACATGgttagaggctgggttgacaggtggaagatggacagtgggacatctgaagc Alignment from Exonerate_protein2genome GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTAC-CTCCCTGGCTACTATGGGCCCCACATG caattccttaatgagtactcataggcctttctttcctcttgtctccatagGAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCCTCCCTGGCTACTATGGGCCCCACATGgttagaggctgggttgacaggtggaagatggacagtgggacatctgaagc Alignment from Exonerate_coding2genome GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTAC-CTCCCTGGCTACTATGGGCCCCACATG caattccttaatgagtactcataggcctttctttcctcttgtctccatagGAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCCTCCCTGGCTACTATGGGCCCCACATGgttagaggctgggttgacaggtggaagatggacagtgggacatctgaagc Alignment from GeneWise GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTAC-CTCCCTGGCTACTATGGGCCCCACATG caattccttaatgagtactcataggcctttctttcctcttgtctccatagGAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCCTCCCTGGCTACTATGGGCCCCACATGgttagaggctgggttgacaggtggaagatggacagtgggacatctgaagc #### Tbc1d10c_ID399_5 --> 1 - 0 Original Alignment gCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGATACTGCCAGGCTCAGGGA-CCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacagggggatgcctgggtggctagcccgagtactctctcaactttcaggCAGCAGGGGCTGCTGCAAGTTATCAAGGCTTACAACCTGTACCGGCCAGAGCAGGGATACTGCCAGGCTCAGGGACCCTGTAGCCGCTGTGCTGCTCATGCATCTACCCCCAGAGgtaagtgaccttgaacctgctatgagaccctcaacccctagtgatccgag Alignment from CESAR gCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGATACTGCCAGGCTCAGGGA-CCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacagggggatgcctgggtggctagcccgagtactctctcaactttcaggCAGCAGGGGCTGCTGCAAGTTATCAAGGCTTACAACCTGTACCGGCCAGAGCAGGGATACTGCCAGGCTCAGGGACCCTGTAGCCGCTGTGCTGCTCATGCATCTACCCCCAGAGgtaagtgaccttgaacctgctatgagaccctcaacccctagtgatccgag Alignment from Spaln_aa2Genome GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGATACTGCCAGGCTCAGGGACCT-GTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacagggggatgcctgggtggctagcccgagtactctctcaactttcagGCAGCAGGGGCTGCTGCAAGTTATCAAGGCTTACAACCTGTACCGGCCAGAGCAGGGATACTGCCAGGCTCAGGGACCCtGTAGCCGCTGTGCTGCTCATGCATCTACCCCCAGAGgtaagtgaccttgaacctgctatgagaccctcaacccctagtgatccgag Alignment from Spaln_nt2Genome GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGATACTGCCAGGCTCA-GGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacagggggatgcctgggtggctagcccgagtactctctcaactttcagGCAGCAGGGGCTGCTGCAAGTTATCAAGGCTTACAACCTGTACCGGCCAGAGCAGGGATACTGCCAGGCTCAGGGACCCTGTAGCCGCTGTGCTGCTCATGCATCTACCCCCAGAGgtaagtgaccttgaacctgctatgagaccctcaacccctagtgatccgag Alignment from Pairagon GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGATACTGCCAGGCTCAGGGA-CCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacagggggatgcctgggtggctagcccgagtactctctcaactttcagGCAGCAGGGGCTGCTGCAAGTTATCAAGGCTTACAACCTGTACCGGCCAGAGCAGGGATACTGCCAGGCTCAGGGACCCTGTAGCCGCTGTGCTGCTCATGCATCTACCCCCAGAGgtaagtgaccttgaacctgctatgagaccctcaacccctagtgatccgag Alignment from Exonerate_protein2genome GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGATACTGCCAGGCTCAGGGA-CCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacagggggatgcctgggtggctagcccgagtactctctcaactttcagGCAGCAGGGGCTGCTGCAAGTTATCAAGGCTTACAACCTGTACCGGCCAGAGCAGGGATACTGCCAGGCTCAGGGACCCTGTAGCCGCTGTGCTGCTCATGCATCTACCCCCAGAGgtaagtgaccttgaacctgctatgagaccctcaacccctagtgatccgag Alignment from Exonerate_coding2genome GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGATACTGCCAGGCTCAGGGA-CCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacagggggatgcctgggtggctagcccgagtactctctcaactttcagGCAGCAGGGGCTGCTGCAAGTTATCAAGGCTTACAACCTGTACCGGCCAGAGCAGGGATACTGCCAGGCTCAGGGACCCTGTAGCCGCTGTGCTGCTCATGCATCTACCCCCAGAGgtaagtgaccttgaacctgctatgagaccctcaacccctagtgatccgag Alignment from GeneWise GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGATACTGCCAGGCTCAGGGACCT-GTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacagggggatgcctgggtggctagcccgagtactctctcaactttcagGCAGCAGGGGCTGCTGCAAGTTATCAAGGCTTACAACCTGTACCGGCCAGAGCAGGGATACTGCCAGGCTCAGGGACCCTGTAGCCGCTGTGCTGCTCATGCATCTACCCCCAGAGgtaagtgaccttgaacctgctatgagaccctcaacccctagtgatccgag #### Tbc1d10c_ID400_4 --> 0 - 2 Original Alignment GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAG-ATGTTTGTGTCACCCCAGGGACACgg acagctccttgccacctaaccctccatatgtgttgtgatctccctttcagGAGCTGGCAGCAGCCCCTGGGGACCCACAGTGGATGGAGGCCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCACGAGCATGTTTGTGTCACCTCAGGGACACgggtaagtggccaggagtacccatgctcctcatgctagattctttagttcta Alignment from CESAR GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAG-ATGTTTGTGTCACCCCAGGGACACgg acagctccttgccacctaaccctccatatgtgttgtgatctccctttcagGAGCTGGCAGCAGCCCCTGGGGACCCACAGTGGATGGAGGCCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCACGAGCATGTTTGTGTCACCTCAGGGACACgggtaagtggccaggagtacccatgctcctcatgctagattctttagttcta Alignment from Spaln_aa2Genome GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAG-ATGTTTGTGTCACCCCAGGGACACGG acagctccttgccacctaaccctccatatgtgttgtgatctccctttcagGAGCTGGCAGCAGCCCCTGGGGACCCACAGTGGATGGAGGCCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCACGAGcATGTTTGTGTCACCTCAGGGACACGGgtaagtggccaggagtacccatgctcctcatgctagattctttagttcta Alignment from Spaln_nt2Genome GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAG-ATGTTTGTGTCACCCCAGGGACACGG acagctccttgccacctaaccctccatatgtgttgtgatctccctttcagGAGCTGGCAGCAGCCCCTGGGGACCCACAGTGGATGGAGGCCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCACGAGCATGTTTGTGTCACCTCAGGGACACGGgtaagtggccaggagtacccatgctcctcatgctagattctttagttcta Alignment from Pairagon GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAG-ATGTTTGTGTCACCCCAGGGACACGG acagctccttgccacctaaccctccatatgtgttgtgatctccctttcagGAGCTGGCAGCAGCCCCTGGGGACCCACAGTGGATGGAGGCCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCACGAGCATGTTTGTGTCACCTCAGGGACACGGgtaagtggccaggagtacccatgctcctcatgctagattctttagttcta Alignment from Exonerate_protein2genome GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAG-ATGTTTGTGTCACCCCAGGGACACGG acagctccttgccacctaaccctccatatgtgttgtgatctccctttcagGAGCTGGCAGCAGCCCCTGGGGACCCACAGTGGATGGAGGCCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCACGAGCATGTTTGTGTCACCTCAGGGACACGGgtaagtggccaggagtacccatgctcctcatgctagattctttagttcta Alignment from Exonerate_coding2genome GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCATGAG-ATGTTTGTGTCACCCCAGGGACACGG acagctccttgccacctaaccctccatatgtgttgtgatctccctttcagGAGCTGGCAGCAGCCCCTGGGGACCCACAGTGGATGGAGGCCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCACGAGCATGTTTGTGTCACCTCAGGGACACGGgtaagtggccaggagtacccatgctcctcatgctagattctttagttcta Alignment from GeneWise GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCAT-GAGATGTTTGTGTCACCCCAGGGACACGG acagctccttgccacctaaccctccatatgtgttgtgatctccctttcagGAGCTGGCAGCAGCCCCTGGGGACCCACAGTGGATGGAGGCCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTGCACGAGCATGTTTGTGTCACCTCAGGGACACGGgtaagtggccaggagtacccatgctcctcatgctagattctttagttcta #### Tbx10_ID258_3 --> 1 - 2 Original Alignment gAGGATGTTCCCA-ACGTTCCAGGTGAAGATCCTGGGCATGGACACGCTGGCTGACTACGCTTTGCTCATG------GACTTTATCCCGTTGGATGACAAGAGATACag caggggctagggggaggggcagagccagtctaatatctgcatttttgcaggAGGATGTTCCCACACATTCCAGGTAAAGATCCTGGGCATGGACACACTGGCTGACTACGCTTTGCTCATGGTGATGGACTTTATACCATTGGATGACAAGAGATACaggtgagccatggcaagggaacaaaagggctgagaacaagaacctgccccta Alignment from CESAR gAGGATGTTCCCA-ACGTTCCAGGTGAAGATCCTGGGCATGGACACGCTGGCTGACTACGCTTTGCTC------ATGGACTTTATCCCGTTGGATGACAAGAGATACag caggggctagggggaggggcagagccagtctaatatctgcatttttgcaggAGGATGTTCCCACACATTCCAGGTAAAGATCCTGGGCATGGACACACTGGCTGACTACGCTTTGCTCATGGTGATGGACTTTATACCATTGGATGACAAGAGATACaggtgagccatggcaagggaacaaaagggctgagaacaagaacctgccccta Alignment from Spaln_aa2Genome GAGGATGTTCCCA-ACGTTCCAGGTGAAGATCCTGGGCATGGACACGCTGGCTGACTACGCTTTG------CTCATGGACTTTATCCCGTTGGATGACAAGAGATACAG caggggctagggggaggggcagagccagtctaatatctgcatttttgcagGAGGATGTTCCCAcACATTCCAGGTAAAGATCCTGGGCATGGACACACTGGCTGACTACGCTTTGCTCATGGTGATGGACTTTATACCATTGGATGACAAGAGATACAGgtgagccatggcaagggaacaaaagggctgagaacaagaacctgccccta Alignment from Spaln_nt2Genome GAGGATGTTCCCA-ACGTTCCAGGTGAAGATCCTGGGCATGGACACGCTGGCTGACTACGCTTTGCTC------ATGGACTTTATCCCGTTGGATGACAAGAGATACAG caggggctagggggaggggcagagccagtctaatatctgcatttttgcagGAGGATGTTCCCACACATTCCAGGTAAAGATCCTGGGCATGGACACACTGGCTGACTACGCTTTGCTCATGGTGATGGACTTTATACCATTGGATGACAAGAGATACAGgtgagccatggcaagggaacaaaagggctgagaacaagaacctgccccta Alignment from Pairagon GAGGATGTTCCCA-ACGTTCCAGGTGAAGATCCTGGGCATGGACACGCTGGCTGACTACGCTTTGCTC------ATGGACTTTATCCCGTTGGATGACAAGAGATACAG caggggctagggggaggggcagagccagtctaatatctgcatttttgcagGAGGATGTTCCCACACATTCCAGGTAAAGATCCTGGGCATGGACACACTGGCTGACTACGCTTTGCTCATGGTGATGGACTTTATACCATTGGATGACAAGAGATACAGgtgagccatggcaagggaacaaaagggctgagaacaagaacctgccccta Alignment from Exonerate_protein2genome GAGGATGTTCCCA-ACGTTCCAGGTGAAGATCCTGGGCATGGACACGCTGGCTGACTACGCTTTGCTC------ATGGACTTTATCCCGTTGGATGACAAGAGATACAG caggggctagggggaggggcagagccagtctaatatctgcatttttgcagGAGGATGTTCCCACACATTCCAGGTAAAGATCCTGGGCATGGACACACTGGCTGACTACGCTTTGCTCATGGTGATGGACTTTATACCATTGGATGACAAGAGATACAGgtgagccatggcaagggaacaaaagggctgagaacaagaacctgccccta Alignment from Exonerate_coding2genome GAGGATGTTCCCA-ACGTTCCAGGTGAAGATCCTGGGCATGGACACGCTGGCTGACTACGCTTTGCTC------ATGGACTTTATCCCGTTGGATGACAAGAGATACAG caggggctagggggaggggcagagccagtctaatatctgcatttttgcagGAGGATGTTCCCACACATTCCAGGTAAAGATCCTGGGCATGGACACACTGGCTGACTACGCTTTGCTCATGGTGATGGACTTTATACCATTGGATGACAAGAGATACAGgtgagccatggcaagggaacaaaagggctgagaacaagaacctgccccta Alignment from GeneWise GAGGATGTTCCCA-ACGTTCCAGGTGAAGATCCTGGGCATGGACACGCTGGCTGACTACGCTTTGCTCATG------GACTTTATCCCGTTGGATGACAAGAGATACAG caggggctagggggaggggcagagccagtctaatatctgcatttttgcagGAGGATGTTCCCACACATTCCAGGTAAAGATCCTGGGCATGGACACACTGGCTGACTACGCTTTGCTCATGGTGATGGACTTTATACCATTGGATGACAAGAGATACAGgtgagccatggcaagggaacaaaagggctgagaacaagaacctgccccta #### Tbx10_ID260_5 --> 0 - 0 Original Alignment ATCATCCTCAACTCCATGCATCGTTATCAGCCCCGTTTCCACGTGGTCTTCGTGGACCCACGCAAGGAC-AGTGCCCGCTATGCCCAGGAAAACTTCAAGTCCTTTGTCTTCACGGAGACCCAGTTTACAGCTGTGACAGCCTATCAGAACCACAGG tggctgaaccagctccactgtgcgtgcaatgattttattttggtttgcagATCATCCTCAACTCCATGCATCGTTATCAGCCCCGTTTCCATGTGGTTTTTGTAGACCCATGCAAGGACCACTGCTCGCTATGCCCAGGAAAACTTCAAGTCCTTTGTCTTCTCAGAGACCCAGTTTACAGCTGTGACAGCCTATCAGAACCACAGGgttagttgtcccacagctccaaaggaccagctcagctctggagggcagag Alignment from CESAR ATCATCCTCAACTCCATGCATCGTTATCAGCCCCGTTTCCACGTGGTCTTCGTGGACCCACGCAAGGAC-AGTGCCCGCTATGCCCAGGAAAACTTCAAGTCCTTTGTCTTCACGGAGACCCAGTTTACAGCTGTGACAGCCTATCAGAACCACAGG tggctgaaccagctccactgtgcgtgcaatgattttattttggtttgcagATCATCCTCAACTCCATGCATCGTTATCAGCCCCGTTTCCATGTGGTTTTTGTAGACCCATGCAAGGACCACTGCTCGCTATGCCCAGGAAAACTTCAAGTCCTTTGTCTTCTCAGAGACCCAGTTTACAGCTGTGACAGCCTATCAGAACCACAGGgttagttgtcccacagctccaaaggaccagctcagctctggagggcagag Alignment from Spaln_aa2Genome ATCATCCTCAACTCCATGCATCGTTATCAGCCCCGTTTCCACGTGGTCTTCGTGGACCCACGCAAGGAC-AGTGCCCGCTATGCCCAGGAAAACTTCAAGTCCTTTGTCTTCACGGAGACCCAGTTTACAGCTGTGACAGCCTATCAGAACCACAGG tggctgaaccagctccactgtgcgtgcaatgattttattttggtttgcagATCATCCTCAACTCCATGCATCGTTATCAGCCCCGTTTCCATGTGGTTTTTGTAGACCCATGCAAGGACcACTGCTCGCTATGCCCAGGAAAACTTCAAGTCCTTTGTCTTCTCAGAGACCCAGTTTACAGCTGTGACAGCCTATCAGAACCACAGGgttagttgtcccacagctccaaaggaccagctcagctctggagggcagag Alignment from Spaln_nt2Genome ATCATCCTCAACTCCATGCATCGTTATCAGCCCCGTTTCCACGTGGTCTTCGTGGACCCACGCAAGGAC-AGTGCCCGCTATGCCCAGGAAAACTTCAAGTCCTTTGTCTTCACGGAGACCCAGTTTACAGCTGTGACAGCCTATCAGAACCACAGG tggctgaaccagctccactgtgcgtgcaatgattttattttggtttgcagATCATCCTCAACTCCATGCATCGTTATCAGCCCCGTTTCCATGTGGTTTTTGTAGACCCATGCAAGGACCACTGCTCGCTATGCCCAGGAAAACTTCAAGTCCTTTGTCTTCTCAGAGACCCAGTTTACAGCTGTGACAGCCTATCAGAACCACAGGgttagttgtcccacagctccaaaggaccagctcagctctggagggcagag Alignment from Pairagon ATCATCCTCAACTCCATGCATCGTTATCAGCCCCGTTTCCACGTGGTCTTCGTGGACCCACGCAAGGA-CAGTGCCCGCTATGCCCAGGAAAACTTCAAGTCCTTTGTCTTCACGGAGACCCAGTTTACAGCTGTGACAGCCTATCAGAACCACAGG tggctgaaccagctccactgtgcgtgcaatgattttattttggtttgcagATCATCCTCAACTCCATGCATCGTTATCAGCCCCGTTTCCATGTGGTTTTTGTAGACCCATGCAAGGACCACTGCTCGCTATGCCCAGGAAAACTTCAAGTCCTTTGTCTTCTCAGAGACCCAGTTTACAGCTGTGACAGCCTATCAGAACCACAGGgttagttgtcccacagctccaaaggaccagctcagctctggagggcagag Alignment from Exonerate_protein2genome ATCATCCTCAACTCCATGCATCGTTATCAGCCCCGTTTCCACGTGGTCTTCGTGGACCCACGCAAGGAC-AGTGCCCGCTATGCCCAGGAAAACTTCAAGTCCTTTGTCTTCACGGAGACCCAGTTTACAGCTGTGACAGCCTATCAGAACCACAGG tggctgaaccagctccactgtgcgtgcaatgattttattttggtttgcagATCATCCTCAACTCCATGCATCGTTATCAGCCCCGTTTCCATGTGGTTTTTGTAGACCCATGCAAGGACCACTGCTCGCTATGCCCAGGAAAACTTCAAGTCCTTTGTCTTCTCAGAGACCCAGTTTACAGCTGTGACAGCCTATCAGAACCACAGGgttagttgtcccacagctccaaaggaccagctcagctctggagggcagag Alignment from Exonerate_coding2genome ATCATCCTCAACTCCATGCATCGTTATCAGCCCCGTTTCCACGTGGTCTTCGTGGACCCACGCAAGGAC-AGTGCCCGCTATGCCCAGGAAAACTTCAAGTCCTTTGTCTTCACGGAGACCCAGTTTACAGCTGTGACAGCCTATCAGAACCACAGG tggctgaaccagctccactgtgcgtgcaatgattttattttggtttgcagATCATCCTCAACTCCATGCATCGTTATCAGCCCCGTTTCCATGTGGTTTTTGTAGACCCATGCAAGGACCACTGCTCGCTATGCCCAGGAAAACTTCAAGTCCTTTGTCTTCTCAGAGACCCAGTTTACAGCTGTGACAGCCTATCAGAACCACAGGgttagttgtcccacagctccaaaggaccagctcagctctggagggcagag Alignment from GeneWise ATCATCCTCAACTCCATGCATCGTTATCAGCCCCGTTTCCACGTGGTCTTCGTGGACCCACGCAAGGAC-AGTGCCCGCTATGCCCAGGAAAACTTCAAGTCCTTTGTCTTCACGGAGACCCAGTTTACAGCTGTGACAGCCTATCAGAACCACAGG tggctgaaccagctccactgtgcgtgcaatgattttattttggtttgcagATCATCCTCAACTCCATGCATCGTTATCAGCCCCGTTTCCATGTGGTTTTTGTAGACCCATGCAAGGACCACTGCTCGCTATGCCCAGGAAAACTTCAAGTCCTTTGTCTTCTCAGAGACCCAGTTTACAGCTGTGACAGCCTATCAGAACCACAGGgttagttgtcccacagctccaaaggaccagctcagctctggagggcagag #### Tbx10_ID262_7 --> 1 - 1 Original Alignment gCCTGTGACCCCCCGGCCACTGCTCAGCATCCCTGCCCGGAGTCGTAGCAGCCTCAGTCCCTGCCTCCTTAAG-GGCTCTGCAGAACGAGAGAAAg tgggggcgctcccttgcccctgcccccatttctgtttcacacctttccaggCCTGTGACCCCCCGGCCACAGCTCAGCATCCCTGCCCGGAGTCGTAGCAGCCTCAGTCCCTGCCTCCTTAAGCGGCTCTGCCGAACGAGAGAAAggtaaatactcagcccaatccacaatgccaggcacacaggcctccaggaag Alignment from CESAR gCCTGTGACCCCCCGGCCACTGCTCAGCATCCCTGCCCGGAGTCGTAGCAGCCTCAGTCCCTGCCTCCTTAAG-GGCTCTGCAGAACGAGAGAAAg tgggggcgctcccttgcccctgcccccatttctgtttcacacctttccaggCCTGTGACCCCCCGGCCACAGCTCAGCATCCCTGCCCGGAGTCGTAGCAGCCTCAGTCCCTGCCTCCTTAAGCGGCTCTGCCGAACGAGAGAAAggtaaatactcagcccaatccacaatgccaggcacacaggcctccaggaag Alignment from Spaln_aa2Genome GCCTGTGACCCCCCGGCCACTGCTCAGCATCCCTGCCCGGAGTCGTAGCAGCCTCAGTCCCTGCCTCCTTAAG-GGCTCTGCAGAACGAGAGAAAG tgggggcgctcccttgcccctgcccccatttctgtttcacacctttccagGCCTGTGACCCCCCGGCCACAGCTCAGCATCCCTGCCCGGAGTCGTAGCAGCCTCAGTCCCTGCCTCCTTAAGcGGCTCTGCCGAACGAGAGAAAGgtaaatactcagcccaatccacaatgccaggcacacaggcctccaggaag Alignment from Spaln_nt2Genome GCCTGTGACCCCCCGGCCACTGCTCAGCATCCCTGCCCGGAGTCGTAGCAGCCTCAGTCCCTGCCTCCTTAAG-GGCTCTGCAGAACGAGAGAAAG tgggggcgctcccttgcccctgcccccatttctgtttcacacctttccagGCCTGTGACCCCCCGGCCACAGCTCAGCATCCCTGCCCGGAGTCGTAGCAGCCTCAGTCCCTGCCTCCTTAAGCGGCTCTGCCGAACGAGAGAAAGgtaaatactcagcccaatccacaatgccaggcacacaggcctccaggaag Alignment from Pairagon GCCTGTGACCCCCCGGCCACTGCTCAGCATCCCTGCCCGGAGTCGTAGCAGCCTCAGTCCCTGCCTCCTTAAG-GGCTCTGCAGAACGAGAGAAAG tgggggcgctcccttgcccctgcccccatttctgtttcacacctttccagGCCTGTGACCCCCCGGCCACAGCTCAGCATCCCTGCCCGGAGTCGTAGCAGCCTCAGTCCCTGCCTCCTTAAGCGGCTCTGCCGAACGAGAGAAAGgtaaatactcagcccaatccacaatgccaggcacacaggcctccaggaag Alignment from Exonerate_protein2genome GCCTGTGACCCCCCGGCCACTGCTCAGCATCCCTGCCCGGAGTCGTAGCAGCCTCAGTCCCTGCCTCCTTAAG-GGCTCTGCAGAACGAGAGAAAG tgggggcgctcccttgcccctgcccccatttctgtttcacacctttccagGCCTGTGACCCCCCGGCCACAGCTCAGCATCCCTGCCCGGAGTCGTAGCAGCCTCAGTCCCTGCCTCCTTAAGCGGCTCTGCCGAACGAGAGAAAGgtaaatactcagcccaatccacaatgccaggcacacaggcctccaggaag Alignment from Exonerate_coding2genome GCCTGTGACCCCCCGGCCACTGCTCAGCATCCCTGCCCGGAGTCGTAGCAGCCTCAGTCCCTGCCTCCTTAAG-GGCTCTGCAGAACGAGAGAAAG tgggggcgctcccttgcccctgcccccatttctgtttcacacctttccagGCCTGTGACCCCCCGGCCACAGCTCAGCATCCCTGCCCGGAGTCGTAGCAGCCTCAGTCCCTGCCTCCTTAAGCGGCTCTGCCGAACGAGAGAAAGgtaaatactcagcccaatccacaatgccaggcacacaggcctccaggaag Alignment from GeneWise GCCTGTGACCCCCCGGCCACTGCTCAGCATCCCTGCCCGGAGTCGTAGCAGCCTCAGTCCCTGCCTCCTT-AAGGGCTCTGCAGAACGAGAGAAAG tgggggcgctcccttgcccctgcccccatttctgtttcacacctttccagGCCTGTGACCCCCCGGCCACAGCTCAGCATCCCTGCCCGGAGTCGTAGCAGCCTCAGTCCCTGCCTCCTTAAGCGGCTCTGCCGAACGAGAGAAAGgtaaatactcagcccaatccacaatgccaggcacacaggcctccaggaag #### Tcirg1_ID169_18 --> 2 - 2 Original Alignment agCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTG-GCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACtg ggcgggggtgtgacaggcattctcaaatctgcctgttctctttttcccagagCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGTGTGGCGGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTGACTGTGCGCCATTCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCTCTGCGGTTGCATtggtaagcgcccctgtagtgggactgggcatggagggaatgggtggatttgc Alignment from CESAR agCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTG-GCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACtg ggcgggggtgtgacaggcattctcaaatctgcctgttctctttttcccagagCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGTGTGGCGGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTGACTGTGCGCCATTCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCTCTGCGGTTGCATtggtaagcgcccctgtagtgggactgggcatggagggaatgggtggatttgc Alignment from Spaln_aa2Genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTG-GCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG ggcgggggtgtgacaggcattctcaaatctgcctgttctctttttcccagAGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGTGTGGCGGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTGACTGTGcGCCATTCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCTCTGCGGTTGCATTGgtaagcgcccctgtagtgggactgggcatggagggaatgggtggatttgc Alignment from Spaln_nt2Genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTG-GCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG ggcgggggtgtgacaggcattctcaaatctgcctgttctctttttcccagAGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGTGTGGCGGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTGACTGTGCGCCATTCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCTCTGCGGTTGCATTGgtaagcgcccctgtagtgggactgggcatggagggaatgggtggatttgc Alignment from Pairagon AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTG-GCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG ggcgggggtgtgacaggcattctcaaatctgcctgttctctttttcccagAGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGTGTGGCGGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTGACTGTGCGCCATTCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCTCTGCGGTTGCATTGgtaagcgcccctgtagtgggactgggcatggagggaatgggtggatttgc Alignment from Exonerate_protein2genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTG-GCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG ggcgggggtgtgacaggcattctcaaatctgcctgttctctttttcccagAGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGTGTGGCGGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTGACTGTGCGCCATTCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCTCTGCGGTTGCATTGgtaagcgcccctgtagtgggactgggcatggagggaatgggtggatttgc Alignment from Exonerate_coding2genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTG-GCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG ggcgggggtgtgacaggcattctcaaatctgcctgttctctttttcccagAGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGTGTGGCGGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTGACTGTGCGCCATTCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCTCTGCGGTTGCATTGgtaagcgcccctgtagtgggactgggcatggagggaatgggtggatttgc Alignment from GeneWise AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTG-GCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG ggcgggggtgtgacaggcattctcaaatctgcctgttctctttttcccagAGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGTGTGGCGGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTGACTGTGCGCCATTCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCTCTGCGGTTGCATTGgtaagcgcccctgtagtgggactgggcatggagggaatgggtggatttgc #### Tcirg1_ID171_16 --> 0 - 0 Original Alignment GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGAT-GCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG tggcacaggccatttcaggggctggagctgaacttttcttttacaaacagGATGAGGACACAGACAAGCTTCTGGCCTCCCCTGATCGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAAgtaagtagaacagtaatttgttgaggaagggctgccagctctggctattg Alignment from CESAR GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGAT-GCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG tggcacaggccatttcaggggctggagctgaacttttcttttacaaacagGATGAGGACACAGACAAGCTTCTGGCCTCCCCTGATCGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAAgtaagtagaacagtaatttgttgaggaagggctgccagctctggctattg Alignment from Spaln_aa2Genome GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGAT-GCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG tggcacaggccatttcaggggctggagctgaacttttcttttacaaacagGATGAGGACACAGACAAGCTTCTGGCCTCCCCTGATcGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAAgtaagtagaacagtaatttgttgaggaagggctgccagctctggctattg Alignment from Spaln_nt2Genome GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGAT-GCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG tggcacaggccatttcaggggctggagctgaacttttcttttacaaacagGATGAGGACACAGACAAGCTTCTGGCCTCCCCTGATCGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAAgtaagtagaacagtaatttgttgaggaagggctgccagctctggctattg Alignment from Pairagon GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGAT-GCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG tggcacaggccatttcaggggctggagctgaacttttcttttacaaacagGATGAGGACACAGACAAGCTTCTGGCCTCCCCTGATCGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAAgtaagtagaacagtaatttgttgaggaagggctgccagctctggctattg Alignment from Exonerate_protein2genome GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGAT-GCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG tggcacaggccatttcaggggctggagctgaacttttcttttacaaacagGATGAGGACACAGACAAGCTTCTGGCCTCCCCTGATCGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAAgtaagtagaacagtaatttgttgaggaagggctgccagctctggctattg Alignment from Exonerate_coding2genome GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGAT-GCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG tggcacaggccatttcaggggctggagctgaacttttcttttacaaacagGATGAGGACACAGACAAGCTTCTGGCCTCCCCTGATCGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAAgtaagtagaacagtaatttgttgaggaagggctgccagctctggctattg Alignment from GeneWise GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGAT-GCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG tggcacaggccatttcaggggctggagctgaacttttcttttacaaacagGATGAGGACACAGACAAGCTTCTGGCCTCCCCTGATCGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAAgtaagtagaacagtaatttgttgaggaagggctgccagctctggctattg #### Tcirg1_ID172_15 --> 0 - 0 Original Alignment GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGA-AGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gtgactggtgccatgcactgtacatggatggatgctatttctttccccagGAAGTGGTACAGTACGTTCTGGTGGTCCTGGCTTTGGCTACTGTCCCTATCCTGCTGCTGGGCACACCCTTGTACCTCCTGCGCCAGCACCGACACAGACAGAAACACTCAGAGAAGA---GCAGGCCAGCAGgtttgtacagcagagagaaaggattacagggatgggaggctgcatgaggg Alignment from CESAR GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGA-AGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gtgactggtgccatgcactgtacatggatggatgctatttctttccccagGAAGTGGTACAGTACGTTCTGGTGGTCCTGGCTTTGGCTACTGTCCCTATCCTGCTGCTGGGCACACCCTTGTACCTCCTGCGCCAGCACCGACACAGACAGAAACACTCAGAGAAGA---GCAGGCCAGCAGgtttgtacagcagagagaaaggattacagggatgggaggctgcatgaggg Alignment from Spaln_aa2Genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGA-AGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gtgactggtgccatgcactgtacatggatggatgctatttctttccccagGAAGTGGTACAGTACGTTCTGGTGGTCCTGGCTTTGGCTACTGTCCCTATCCTGCTGCTGGGCACACCCTTGTACCTCCTGCGCCAGCACCGACACAGAcAGAAACACTCAGAGAAGA---GCAGGCCAGCAGgtttgtacagcagagagaaaggattacagggatgggaggctgcatgaggg Alignment from Spaln_nt2Genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGA-AGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gtgactggtgccatgcactgtacatggatggatgctatttctttccccagGAAGTGGTACAGTACGTTCTGGTGGTCCTGGCTTTGGCTACTGTCCCTATCCTGCTGCTGGGCACACCCTTGTACCTCCTGCGCCAGCACCGACACAGACAGAAACACTCAGAGAAG---AGCAGGCCAGCAGgtttgtacagcagagagaaaggattacagggatgggaggctgcatgaggg Alignment from Pairagon GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGA-AGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gtgactggtgccatgcactgtacatggatggatgctatttctttccccagGAAGTGGTACAGTACGTTCTGGTGGTCCTGGCTTTGGCTACTGTCCCTATCCTGCTGCTGGGCACACCCTTGTACCTCCTGCGCCAGCACCGACACAGACAGAAACACTCAGAGAAG---AGCAGGCCAGCAGgtttgtacagcagagagaaaggattacagggatgggaggctgcatgaggg Alignment from Exonerate_protein2genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGA-AGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gtgactggtgccatgcactgtacatggatggatgctatttctttccccagGAAGTGGTACAGTACGTTCTGGTGGTCCTGGCTTTGGCTACTGTCCCTATCCTGCTGCTGGGCACACCCTTGTACCTCCTGCGCCAGCACCGACACAGACAGAAACACTCAGAGAAGA---GCAGGCCAGCAGgtttgtacagcagagagaaaggattacagggatgggaggctgcatgaggg Alignment from Exonerate_coding2genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGA-AGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gtgactggtgccatgcactgtacatggatggatgctatttctttccccagGAAGTGGTACAGTACGTTCTGGTGGTCCTGGCTTTGGCTACTGTCCCTATCCTGCTGCTGGGCACACCCTTGTACCTCCTGCGCCAGCACCGACACAGACAGAAACACTCAGAGAAGA---GCAGGCCAGCAGgtttgtacagcagagagaaaggattacagggatgggaggctgcatgaggg Alignment from GeneWise GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCAC-AGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gtgactggtgccatgcactgtacatggatggatgctatttctttccccagGAAGTGGTACAGTACGTTCTGGTGGTCCTGGCTTTGGCTACTGTCCCTATCCTGCTGCTGGGCACACCCTTGTACCTCCTGCGCCAGCACCGACACAGACAGAAACACTCAGAGAAGA---GCAGGCCAGCAGgtttgtacagcagagagaaaggattacagggatgggaggctgcatgaggg #### Tcirg1_ID175_12 --> 1 - 0 Original Alignment tGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTG-AACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG agggcacctggccaactgtgcagctcagtgtggtcaactctctctttcagtGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGCAACCCTAACATTACAGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGATCCAgtaattgggcataccagtgcatggaaaggaggcagctgggaaggcttgtc Alignment from CESAR tGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTG-AACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG agggcacctggccaactgtgcagctcagtgtggtcaactctctctttcagtGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGCAACCCTAACATTACAGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGATCCAgtaattgggcataccagtgcatggaaaggaggcagctgggaaggcttgtc Alignment from Spaln_aa2Genome TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAAC-CCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG agggcacctggccaactgtgcagctcagtgtggtcaactctctctttcagTGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGCAAcCCTAACATTACAGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGATCCAgtaattgggcataccagtgcatggaaaggaggcagctgggaaggcttgtc Alignment from Spaln_nt2Genome TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTG-AACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG agggcacctggccaactgtgcagctcagtgtggtcaactctctctttcagTGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGCAACCCTAACATTACAGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGATCCAgtaattgggcataccagtgcatggaaaggaggcagctgggaaggcttgtc Alignment from Pairagon TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTG-AACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG agggcacctggccaactgtgcagctcagtgtggtcaactctctctttcagTGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGCAACCCTAACATTACAGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGATCCAgtaattgggcataccagtgcatggaaaggaggcagctgggaaggcttgtc Alignment from Exonerate_protein2genome TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTG-AACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG agggcacctggccaactgtgcagctcagtgtggtcaactctctctttcagTGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGCAACCCTAACATTACAGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGATCCAgtaattgggcataccagtgcatggaaaggaggcagctgggaaggcttgtc Alignment from Exonerate_coding2genome TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTG-AACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG agggcacctggccaactgtgcagctcagtgtggtcaactctctctttcagTGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGCAACCCTAACATTACAGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGATCCAgtaattgggcataccagtgcatggaaaggaggcagctgggaaggcttgtc Alignment from GeneWise TGACGAGTATCTGTCCCAGCACTCCATGCTCACC-CTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG agggcacctggccaactgtgcagctcagtgtggtcaactctctctttcagTGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGCAACCCTAACATTACAGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGATCCAgtaattgggcataccagtgcatggaaaggaggcagctgggaaggcttgtc #### Tcirg1_ID176_11 --> 0 - 2 Original Alignment ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTC-AGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGag ccatctcttccgggacccccagatctggttttgtggacttatgcttgcagATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTTATCTACAATGAGTGTTTCCAGCCGAGCAACTACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGatgtacttcctataacccttcctatgcagccagggcacctggccaactgtgc Alignment from CESAR ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTC-AGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGag ccatctcttccgggacccccagatctggttttgtggacttatgcttgcagATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTTATCTACAATGAGTGTTTCCAGCCGAGCAACTACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGatgtacttcctataacccttcctatgcagccagggcacctggccaactgtgc Alignment from Spaln_aa2Genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTC-AGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG ccatctcttccgggacccccagatctggttttgtggacttatgcttgcagATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTTATCTACAATGAGTGTTTCcAGCCGAGCAACTACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGATgtacttcctataacccttcctatgcagccagggcacctggccaactgtgc Alignment from Spaln_nt2Genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTT-CAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG ccatctcttccgggacccccagatctggttttgtggacttatgcttgcagATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTTATCTACAATGAGTGTTTCCAGCCGAGCAACTACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGATgtacttcctataacccttcctatgcagccagggcacctggccaactgtgc Alignment from Pairagon ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTT-CAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG ccatctcttccgggacccccagatctggttttgtggacttatgcttgcagATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTTATCTACAATGAGTGTTTCCAGCCGAGCAACTACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGATgtacttcctataacccttcctatgcagccagggcacctggccaactgtgc Alignment from Exonerate_protein2genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTC-AGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG ccatctcttccgggacccccagatctggttttgtggacttatgcttgcagATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTTATCTACAATGAGTGTTTCCAGCCGAGCAACTACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGATgtacttcctataacccttcctatgcagccagggcacctggccaactgtgc Alignment from Exonerate_coding2genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTC-AGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG ccatctcttccgggacccccagatctggttttgtggacttatgcttgcagATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTTATCTACAATGAGTGTTTCCAGCCGAGCAACTACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGATgtacttcctataacccttcctatgcagccagggcacctggccaactgtgc Alignment from GeneWise ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTC-AGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG ccatctcttccgggacccccagatctggttttgtggacttatgcttgcagATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTCTACACTGGCTTTATCTACAATGAGTGTTTCCAGCCGAGCAACTACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGATgtacttcctataacccttcctatgcagccagggcacctggccaactgtgc #### Tcirg1_ID181_6 --> 0 - 2 Original Alignment CCAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCC-TACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACtg CCAGTGACGgtaagtttacagggaagacacctgcaggctgctttttgtagGGTGAGCCTGCAACCTGGATGACCTTTGTCATATCCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACtggtgagaaacgaatgcctggtcactcagtcacaggaggtgtccagtcaact Alignment from CESAR CCAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCC-TACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACtg CCAGTGACGgtaattttacagggaagacacctgcaggctgctttttgtagGGTGAGCCTGCAACCTGGATGACCTTTGTCATATCCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACtggtgagaaacgaatgcctggtcactcagtcacaggaggtgtccagtcaact Alignment from Spaln_aa2Genome CCAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCC-TACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CCAGTGACGgtaagtttacagggaagacacctgcaggctgctttttgtagGGTGAGCCTGCAACCTGGATGACCTTTGTCATATCCcTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTGgtgagaaacgaatgcctggtcactcagtcacaggaggtgtccagtcaact Alignment from Spaln_nt2Genome CCAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCC-TACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CCAGTGACGgtaagtttacagggaagacacctgcaggctgctttttgtagGGTGAGCCTGCAACCTGGATGACCTTTGTCATATCCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTGgtgagaaacgaatgcctggtcactcagtcacaggaggtgtccagtcaact Alignment from Pairagon CCAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCT-CCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CCAGTGACGgtaagtttacagggaagacacctgcaggctgctttttgtagGGTGAGCCTGCAACCTGGATGACCTTTGTCATATCCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTGgtgagaaacgaatgcctggtcactcagtcacaggaggtgtccagtcaact Alignment from Exonerate_protein2genome CCAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCC-TACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CCAGTGACGgtaagtttacagggaagacacctgcaggctgctttttgtagGGTGAGCCTGCAACCTGGATGACCTTTGTCATATCCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTGgtgagaaacgaatgcctggtcactcagtcacaggaggtgtccagtcaact Alignment from Exonerate_coding2genome CCAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATCTCC-TACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CCAGTGACGgtaagtttacagggaagacacctgcaggctgctttttgtagGGTGAGCCTGCAACCTGGATGACCTTTGTCATATCCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTGgtgagaaacgaatgcctggtcactcagtcacaggaggtgtccagtcaact Alignment from GeneWise CCAGTGACG GGTGAGCCTGCAACTTGGATGACCTTTGTCATC-TCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CCAGTGACGgtaagtttacagggaagacacctgcaggctgctttttgtagGGTGAGCCTGCAACCTGGATGACCTTTGTCATATCCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTGgtgagaaacgaatgcctggtcactcagtcacaggaggtgtccagtcaact #### Tcirg1_ID184_3 --> 2 - 0 Original Alignment ccTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTG-CACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaacttcctccaacccctcctgtgccctcccgctccagccTTCTTGCGGGAAGAAGTGCCGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCGCGAGACCTGCTGCGCATCCAGGAGGAGACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAAGAGGCACTGCGGGCCCAGCTGCCACCAGCTGCGGCTTCACTCAGCTGTGCTGGGCCAGAGCCACAGCCCGCCAgtgagtcccagccagagcaggtatggggcctcaagatatacatgccatgg Alignment from CESAR ccTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTG-CACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaacttcctccaacccctcctgtgccctcccgctccagccTTCTTGCGGGAAGAAGTGCCGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCGCGAGACCTGCTGCGCATCCAGGAGGAGACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAAGAGGCACTGCGGGCCCAGCTGCCACCAGCTGCGGCTTCACTCAGCTGTGCTGGGCCAGAGCCACAGCCCGCCAgtgagtcccagccagagcaggtatggggcctcaagatatacatgccatgg Alignment from Spaln_aa2Genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTG-CACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaacttcctccaacccctcctgtgccctcccgctccagCCTTCTTGCGGGAAGAAGTGCCGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCGCGAGACCTGCTGCGCATCCAGGAGGAGACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAAGAGGCACTGCGGGCCCAGCTGcCACCAGCTGCGGCTTCACTCAGCTGTGCTGGGCCAGAGCCACAGCCCGCCAgtgagtcccagccagagcaggtatggggcctcaagatatacatgccatgg Alignment from Spaln_nt2Genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTG-CACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaacttcctccaacccctcctgtgccctcccgctccagCCTTCTTGCGGGAAGAAGTGCCGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCGCGAGACCTGCTGCGCATCCAGGAGGAGACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAAGAGGCACTGCGGGCCCAGCTGCCACCAGCTGCGGCTTCACTCAGCTGTGCTGGGCCAGAGCCACAGCCCGCCAgtgagtcccagccagagcaggtatggggcctcaagatatacatgccatgg Alignment from Pairagon CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTG-CACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaacttcctccaacccctcctgtgccctcccgctccagCCTTCTTGCGGGAAGAAGTGCCGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCGCGAGACCTGCTGCGCATCCAGGAGGAGACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAAGAGGCACTGCGGGCCCAGCTGCCACCAGCTGCGGCTTCACTCAGCTGTGCTGGGCCAGAGCCACAGCCCGCCAgtgagtcccagccagagcaggtatggggcctcaagatatacatgccatgg Alignment from Exonerate_protein2genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTG-CACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaacttcctccaacccctcctgtgccctcccgctccagCCTTCTTGCGGGAAGAAGTGCCGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCGCGAGACCTGCTGCGCATCCAGGAGGAGACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAAGAGGCACTGCGGGCCCAGCTGCCACCAGCTGCGGCTTCACTCAGCTGTGCTGGGCCAGAGCCACAGCCCGCCAgtgagtcccagccagagcaggtatggggcctcaagatatacatgccatgg Alignment from Exonerate_coding2genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTG-CACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaacttcctccaacccctcctgtgccctcccgctccagCCTTCTTGCGGGAAGAAGTGCCGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCGCGAGACCTGCTGCGCATCCAGGAGGAGACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAAGAGGCACTGCGGGCCCAGCTGCCACCAGCTGCGGCTTCACTCAGCTGTGCTGGGCCAGAGCCACAGCCCGCCAgtgagtcccagccagagcaggtatggggcctcaagatatacatgccatgg Alignment from GeneWise CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAG-CTGCACCAGCTGCGGCTTCACTCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaacttcctccaacccctcctgtgccctcccgctccagCCTTCTTGCGGGAAGAAGTGCCGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCGCGAGACCTGCTGCGCATCCAGGAGGAGACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAAGAGGCACTGCGGGCCCAGCTGCCACCAGCTGCGGCTTCACTCAGCTGTGCTGGGCCAGAGCCACAGCCCGCCAgtgagtcccagccagagcaggtatggggcctcaagatatacatgccatgg #### Tcirg1_ID185_2 --> 0 - 1 Original Alignment CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGG-CGCTGCGAGGAACTGGAGAAGACGTTTa atcccctcccagaggttctgatacatatatttttcctgaatgttccacagTTCAATGAATCCGTGAGTGCGTTCCAGAGACGCTTTGTGGTAGATGTCCGGCCGCTGTGAGGAACTGGAGAAGACGTTTagtaggctggacccattcacatcccatggtatgagtactaggcaggcttgg Alignment from CESAR CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGG-CGCTGCGAGGAACTGGAGAAGACGTTTa atcccctcccagaggttctgatacatatatttttcctgaatgttccacagTTCAATGAATCCGTGAGTGCGTTCCAGAGACGCTTTGTGGTAGATGTCCGGCCGCTGTGAGGAACTGGAGAAGACGTTTagtaggctggacccattcacatcccatggtatgagtactaggcaggcttgg Alignment from Spaln_aa2Genome CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGG-CGCTGCGAGGAACTGGAGAAGACGTTTA atcccctcccagaggttctgatacatatatttttcctgaatgttccacagTTCAATGAATCCGTGAGTGCGTTCCAGAGACGCTTTGTGGTAGATGTCCGGcCGCTGTGAGGAACTGGAGAAGACGTTTAgtaggctggacccattcacatcccatggtatgagtactaggcaggcttgg Alignment from Spaln_nt2Genome CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGG-CGCTGCGAGGAACTGGAGAAGACGTTTA atcccctcccagaggttctgatacatatatttttcctgaatgttccacagTTCAATGAATCCGTGAGTGCGTTCCAGAGACGCTTTGTGGTAGATGTCCGGCCGCTGTGAGGAACTGGAGAAGACGTTTAgtaggctggacccattcacatcccatggtatgagtactaggcaggcttgg Alignment from Pairagon CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGG-CGCTGCGAGGAACTGGAGAAGACGTTTA atcccctcccagaggttctgatacatatatttttcctgaatgttccacagTTCAATGAATCCGTGAGTGCGTTCCAGAGACGCTTTGTGGTAGATGTCCGGCCGCTGTGAGGAACTGGAGAAGACGTTTAgtaggctggacccattcacatcccatggtatgagtactaggcaggcttgg Alignment from Exonerate_protein2genome CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGG-CGCTGCGAGGAACTGGAGAAGACGTTTA atcccctcccagaggttctgatacatatatttttcctgaatgttccacagTTCAATGAATCCGTGAGTGCGTTCCAGAGACGCTTTGTGGTAGATGTCCGGCCGCTGTGAGGAACTGGAGAAGACGTTTAgtaggctggacccattcacatcccatggtatgagtactaggcaggcttgg Alignment from Exonerate_coding2genome CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGG-CGCTGCGAGGAACTGGAGAAGACGTTTA atcccctcccagaggttctgatacatatatttttcctgaatgttccacagTTCAATGAATCCGTGAGTGCGTTCCAGAGACGCTTTGTGGTAGATGTCCGGCCGCTGTGAGGAACTGGAGAAGACGTTTAgtaggctggacccattcacatcccatggtatgagtactaggcaggcttgg Alignment from GeneWise CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGG-CGCTGCGAGGAACTGGAGAAGACGTTTA atcccctcccagaggttctgatacatatatttttcctgaatgttccacagTTCAATGAATCCGTGAGTGCGTTCCAGAGACGCTTTGTGGTAGATGTCCGGCCGCTGTGAGGAACTGGAGAAGACGTTTAgtaggctggacccattcacatcccatggtatgagtactaggcaggcttgg #### Tctn3_ID7990_11 --> 0 - 2 Original Alignment ATGACCCTGTTGCAGAGCGAGGGTAAT-GGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAag tcctatgttgtctgtctctagtcacctttcatggtataaatgacttgcagATGACCCTGTTGCAGAGTGAGGGTAATCGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAATTAaggtaagtatttgcctcagagcacctcccgccgttttgtttctgtttctagg Alignment from CESAR ATGACCCTGTTGCAGAGCGAGGGTAAT-GGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAag tcctatgttgtctgtctctagtcacctttcatggtataaatgacttgcagATGACCCTGTTGCAGAGTGAGGGTAATCGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAATTAaggtaagtatttgcctcagagcacctcccgccgttttgtttctgtttctagg Alignment from Spaln_aa2Genome ATGACCCTGTTGCAGAGCGAGGGTAAT-GGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG tcctatgttgtctgtctctagtcacctttcatggtataaatgacttgcagATGACCCTGTTGCAGAGTGAGGGTAATcGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAATTAAGgtaagtatttgcctcagagcacctcccgccgttttgtttctgtttctagg Alignment from Spaln_nt2Genome ATGACCCTGTTGCAGAGCGAGGGTAAT-GGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG tcctatgttgtctgtctctagtcacctttcatggtataaatgacttgcagATGACCCTGTTGCAGAGTGAGGGTAATCGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAATTAAGgtaagtatttgcctcagagcacctcccgccgttttgtttctgtttctagg Alignment from Pairagon ATGACCCTGTTGCAGAGCGAGGGTAAT-GGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG tcctatgttgtctgtctctagtcacctttcatggtataaatgacttgcagATGACCCTGTTGCAGAGTGAGGGTAATCGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAATTAAGgtaagtatttgcctcagagcacctcccgccgttttgtttctgtttctagg Alignment from Exonerate_protein2genome ATGACCCTGTTGCAGAGCGAGGGTAAT-GGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG tcctatgttgtctgtctctagtcacctttcatggtataaatgacttgcagATGACCCTGTTGCAGAGTGAGGGTAATCGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAATTAAGgtaagtatttgcctcagagcacctcccgccgttttgtttctgtttctagg Alignment from Exonerate_coding2genome ATGACCCTGTTGCAGAGCGAGGGTAAT-GGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG tcctatgttgtctgtctctagtcacctttcatggtataaatgacttgcagATGACCCTGTTGCAGAGTGAGGGTAATCGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAATTAAGgtaagtatttgcctcagagcacctcccgccgttttgtttctgtttctagg Alignment from GeneWise ATGACCCTGTTGCAGAGCGAGGGTAAT-GGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG tcctatgttgtctgtctctagtcacctttcatggtataaatgacttgcagATGACCCTGTTGCAGAGTGAGGGTAATCGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAATTAAGgtaagtatttgcctcagagcacctcccgccgttttgtttctgtttctagg #### Tctn3_ID7995_6 --> 2 - 0 Original Alignment gtTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGT-TTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG agggctgtcatccctctttgtgttataatcctcttgcctgtctcttctaggtTTTCTAGAGACTAAAAGCACAACATGTCCCCGTCTTCTTTAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCAGCCTCTTACTATAACTTCAGAGTCTTGAAGgtaaggcataccacccttcttcactctccagactctcctcacttgaatta Alignment from CESAR gtTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGT-TTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG agggctgtcatccctctttgtgttataatcctcttgcctgtctcttctaggtTTTCTAGAGACTAAAAGCACAACATGTCCCCGTCTTCTTTAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCAGCCTCTTACTATAACTTCAGAGTCTTGAAGgtaaggcataccacccttcttcactctccagactctcctcacttgaatta Alignment from Spaln_aa2Genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGT-TTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG agggctgtcatccctctttgtgttataatcctcttgcctgtctcttctagGTTTTCTAGAGACTAAAAGCACAACATGTCCCCGTcTTCTTTAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCAGCCTCTTACTATAACTTCAGAGTCTTGAAGgtaaggcataccacccttcttcactctccagactctcctcacttgaatta Alignment from Spaln_nt2Genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGT-TTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG agggctgtcatccctctttgtgttataatcctcttgcctgtctcttctagGTTTTCTAGAGACTAAAAGCACAACATGTCCCCGTCTTCTTTAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCAGCCTCTTACTATAACTTCAGAGTCTTGAAGgtaaggcataccacccttcttcactctccagactctcctcacttgaatta Alignment from Pairagon GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGT-TTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG agggctgtcatccctctttgtgttataatcctcttgcctgtctcttctagGTTTTCTAGAGACTAAAAGCACAACATGTCCCCGTCTTCTTTAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCAGCCTCTTACTATAACTTCAGAGTCTTGAAGgtaaggcataccacccttcttcactctccagactctcctcacttgaatta Alignment from Exonerate_protein2genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGT-TTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG agggctgtcatccctctttgtgttataatcctcttgcctgtctcttctagGTTTTCTAGAGACTAAAAGCACAACATGTCCCCGTCTTCTTTAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCAGCCTCTTACTATAACTTCAGAGTCTTGAAGgtaaggcataccacccttcttcactctccagactctcctcacttgaatta Alignment from Exonerate_coding2genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGT-TTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG agggctgtcatccctctttgtgttataatcctcttgcctgtctcttctagGTTTTCTAGAGACTAAAAGCACAACATGTCCCCGTCTTCTTTAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCAGCCTCTTACTATAACTTCAGAGTCTTGAAGgtaaggcataccacccttcttcactctccagactctcctcacttgaatta Alignment from GeneWise GTTTCCTAGAGAGTAAAAGCACAACGTGTCCT-CGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG agggctgtcatccctctttgtgttataatcctcttgcctgtctcttctagGTTTTCTAGAGACTAAAAGCACAACATGTCCCCGTCTTCTTTAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCAGCCTCTTACTATAACTTCAGAGTCTTGAAGgtaaggcataccacccttcttcactctccagactctcctcacttgaatta #### Tdrd1_ID12222_23 --> 2 - 0 Original Alignment agATACCACACAGCAGAGACTGC-TGTTGCACAGAGTTACAGAAACAG gatccctcactgccatgacctaggcccacatctctttgttcttctaacagagATACCACACAGCAGAGACTGCCTGTTGCACAGAATTACAGAAACAGgtaagtgctgcttccgacatgaagcccacatgctgcctcccattgacata Alignment from CESAR agATACCACACAGCAGAGACTGC-TGTTGCACAGAGTTACAGAAACAG gatccctcactgccatgacctaggcccacatctctttgttcttctaacagagATACCACACAGCAGAGACTGCCTGTTGCACAGAATTACAGAAACAGgtaagtgctgcttccgacatgaagcccacatgctgcctcccattgacata Alignment from Spaln_aa2Genome AGATACCACACAGCAGAGACTGC-TGTTGCACAGAGTTACAGAAACAG gatccctcactgccatgacctaggcccacatctctttgttcttctaacagAGATACCACACAGCAGAGACTGCcTGTTGCACAGAATTACAGAAACAGgtaagtgctgcttccgacatgaagcccacatgctgcctcccattgacata Alignment from Spaln_nt2Genome AGATACCACACAGCAGAGACTG-CTGTTGCACAGAGTTACAGAAACAG gatccctcactgccatgacctaggcccacatctctttgttcttctaacagAGATACCACACAGCAGAGACTGCCTGTTGCACAGAATTACAGAAACAGgtaagtgctgcttccgacatgaagcccacatgctgcctcccattgacata Alignment from Pairagon AGATACCACACAGCAGAGACTG-CTGTTGCACAGAGTTACAGAAACAG gatccctcactgccatgacctaggcccacatctctttgttcttctaacagAGATACCACACAGCAGAGACTGCCTGTTGCACAGAATTACAGAAACAGgtaagtgctgcttccgacatgaagcccacatgctgcctcccattgacata Alignment from Exonerate_protein2genome AGATACCACACAGCAGAGACTGC-TGTTGCACAGAGTTACAGAAACAG gatccctcactgccatgacctaggcccacatctctttgttcttctaacagAGATACCACACAGCAGAGACTGCCTGTTGCACAGAATTACAGAAACAGgtaagtgctgcttccgacatgaagcccacatgctgcctcccattgacata Alignment from Exonerate_coding2genome AGATACCACACAGCAGAGACTGC-TGTTGCACAGAGTTACAGAAACAG gatccctcactgccatgacctaggcccacatctctttgttcttctaacagAGATACCACACAGCAGAGACTGCCTGTTGCACAGAATTACAGAAACAGgtaagtgctgcttccgacatgaagcccacatgctgcctcccattgacata Alignment from GeneWise gatccctcactgccatgacctaggcccacatctctttgttcttctaacagagataccacacagcagagactgcctgttgcacagaattacagaaacaggtaagtgctgcttccgacatgaagcccacatgctgcctcccattgacata #### Tle4_ID3625_13 --> 2 - 0 Original Alignment caTCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCT-GCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG accgaagaaggtgcaactaccattttcttaatatctgtttttatttccagcaTCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGTATGAACGGAGAGCTGACCAGCCCCGGAGCTGCATATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCCGCTACTGCTCGCAGCTGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtaagtttacatgcatttatagttgtttcagaacacacagcattcttttt Alignment from CESAR caTCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCT-GCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG accgaagaaggtgcaactaccattttcttaatatctgtttttatttccagcaTCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGTATGAACGGAGAGCTGACCAGCCCCGGAGCTGCATATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCCGCTACTGCTCGCAGCTGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtaagtttacatgcatttatagttgtttcagaacacacagcattcttttt Alignment from Spaln_aa2Genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCT-GCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG accgaagaaggtgcaactaccattttcttaatatctgtttttatttccagCATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGTATGAACGGAGAGCTGACCAGCCCCGGAGCTGCATATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCCGCTACTGCTcGCAGCTGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtaagtttacatgcatttatagttgtttcagaacacacagcattcttttt Alignment from Spaln_nt2Genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCT-GCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG accgaagaaggtgcaactaccattttcttaatatctgtttttatttccagCATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGTATGAACGGAGAGCTGACCAGCCCCGGAGCTGCATATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCCGCTACTGCTCGCAGCTGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtaagtttacatgcatttatagttgtttcagaacacacagcattcttttt Alignment from Pairagon CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCT-GCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG accgaagaaggtgcaactaccattttcttaatatctgtttttatttccagCATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGTATGAACGGAGAGCTGACCAGCCCCGGAGCTGCATATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCCGCTACTGCTCGCAGCTGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtaagtttacatgcatttatagttgtttcagaacacacagcattcttttt Alignment from Exonerate_protein2genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCT-GCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG accgaagaaggtgcaactaccattttcttaatatctgtttttatttccagCATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGTATGAACGGAGAGCTGACCAGCCCCGGAGCTGCATATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCCGCTACTGCTCGCAGCTGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtaagtttacatgcatttatagttgtttcagaacacacagcattcttttt Alignment from Exonerate_coding2genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCT-GCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG accgaagaaggtgcaactaccattttcttaatatctgtttttatttccagCATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGTATGAACGGAGAGCTGACCAGCCCCGGAGCTGCATATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCCGCTACTGCTCGCAGCTGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtaagtttacatgcatttatagttgtttcagaacacacagcattcttttt Alignment from GeneWise CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCT-GCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG accgaagaaggtgcaactaccattttcttaatatctgtttttatttccagCATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGTATGAACGGAGAGCTGACCAGCCCCGGAGCTGCATATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCCGCTACTGCTCGCAGCTGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtaagtttacatgcatttatagttgtttcagaacacacagcattcttttt #### Tm7sf2_ID1411_9 --> 2 - 1 Original Alignment gtCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTAC-CTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTg atgaaatgaaacaggagggctttgtaccttttgtgtttttccctccccaggtCTCGAGACCATCCCCACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTCCGACATCCCAACTACCCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTggtagacgggttttggagaaggtcagtgtgcctggtgggagcactgaccaa Alignment from CESAR gtCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTAC-CTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTg atgaaatgaaacaggagggctttgtaccttttgtgtttttccctccccaggtCTCGAGACCATCCCCACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTCCGACATCCCAACTACCCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTggtagacgggttttggagaaggtcagtgtgcctggtgggagcactgaccaa Alignment from Spaln_aa2Genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGA-GATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG atgaaatgaaacaggagggctttgtaccttttgtgtttttccctccccagGTCTCGAGACCATCCCCACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTCCGACATCCCAACTACCCTGGGaGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTGgtagacgggttttggagaaggtcagtgtgcctggtgggagcactgaccaa Alignment from Spaln_nt2Genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTA-CCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG atgaaatgaaacaggagggctttgtaccttttgtgtttttccctccccagGTCTCGAGACCATCCCCACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTCCGACATCCCAACTACCCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTGgtagacgggttttggagaaggtcagtgtgcctggtgggagcactgaccaa Alignment from Pairagon GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTA-CCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG atgaaatgaaacaggagggctttgtaccttttgtgtttttccctccccagGTCTCGAGACCATCCCCACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTCCGACATCCCAACTACCCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTGgtagacgggttttggagaaggtcagtgtgcctggtgggagcactgaccaa Alignment from Exonerate_protein2genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTAC-CTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG atgaaatgaaacaggagggctttgtaccttttgtgtttttccctccccagGTCTCGAGACCATCCCCACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTCCGACATCCCAACTACCCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTGgtagacgggttttggagaaggtcagtgtgcctggtgggagcactgaccaa Alignment from Exonerate_coding2genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACC-TGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG atgaaatgaaacaggagggctttgtaccttttgtgtttttccctccccagGTCTCGAGACCATCCCCACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTCCGACATCCCAACTACCCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTGgtagacgggttttggagaaggtcagtgtgcctggtgggagcactgaccaa Alignment from GeneWise GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTAC-CTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG atgaaatgaaacaggagggctttgtaccttttgtgtttttccctccccagGTCTCGAGACCATCCCCACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTCCGACATCCCAACTACCCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTGgtagacgggttttggagaaggtcagtgtgcctggtgggagcactgaccaa #### Tm7sf2_ID1416_4 --> 2 - 1 Original Alignment gcTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCG-AAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAg ctttgttagtatgcaagccaccccaggcttcacaactgccttctccccaggcTTCCAGGCCCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGTGTGTCAGTGGGGCTGCCCCTGGGGGGACTCCCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTTGTCTTCAGTCTCCTCCTCTATGCACAAGGCTTTGGTAACTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAggtgagaagggtcccagtgaggtctggatgaggtaggggggatgcatgcat Alignment from CESAR gcTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCG-AAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAg ctttgttagtatgcaagccaccccaggcttcacaactgccttctccccaggcTTCCAGGCCCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGTGTGTCAGTGGGGCTGCCCCTGGGGGGACTCCCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTTGTCTTCAGTCTCCTCCTCTATGCACAAGGCTTTGGTAACTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAggtgagaagggtcccagtgaggtctggatgaggtaggggggatgcatgcat Alignment from Spaln_aa2Genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCG-AAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttgttagtatgcaagccaccccaggcttcacaactgccttctccccagGCTTCCAGGCCCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGTGTGTCAGTGGGGCTGCCCCTGGGGGGACTCCCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTTGTCTTCAGTCTCCTCCTCTATGCAcAAGGCTTTGGTAACTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAGgtgagaagggtcccagtgaggtctggatgaggtaggggggatgcatgcat Alignment from Spaln_nt2Genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCG-AAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttgttagtatgcaagccaccccaggcttcacaactgccttctccccagGCTTCCAGGCCCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGTGTGTCAGTGGGGCTGCCCCTGGGGGGACTCCCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTTGTCTTCAGTCTCCTCCTCTATGCACAAGGCTTTGGTAACTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAGgtgagaagggtcccagtgaggtctggatgaggtaggggggatgcatgcat Alignment from Pairagon GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCG-AAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttgttagtatgcaagccaccccaggcttcacaactgccttctccccagGCTTCCAGGCCCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGTGTGTCAGTGGGGCTGCCCCTGGGGGGACTCCCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTTGTCTTCAGTCTCCTCCTCTATGCACAAGGCTTTGGTAACTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAGgtgagaagggtcccagtgaggtctggatgaggtaggggggatgcatgcat Alignment from Exonerate_protein2genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCG-AAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttgttagtatgcaagccaccccaggcttcacaactgccttctccccagGCTTCCAGGCCCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGTGTGTCAGTGGGGCTGCCCCTGGGGGGACTCCCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTTGTCTTCAGTCTCCTCCTCTATGCACAAGGCTTTGGTAACTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAGgtgagaagggtcccagtgaggtctggatgaggtaggggggatgcatgcat Alignment from Exonerate_coding2genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCG---AAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttgttagtatgcaagccaccccaggcttcacaactgccttctccccagGCTTCCAGGCCCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGTGTGTCAGTGGGGCTGCCCCTGGGGGGACTCCCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTTGTCTTCAGTCTCCTCCTCTATG--CACAAGGCTTTGGTAACTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAGgtgagaagggtcccagtgaggtctggatgaggtaggggggatgcatgcat Alignment from GeneWise GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTAT-GCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttgttagtatgcaagccaccccaggcttcacaactgccttctccccagGCTTCCAGGCCCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGTGTGTCAGTGGGGCTGCCCCTGGGGGGACTCCCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTTGTCTTCAGTCTCCTCCTCTATGCACAAGGCTTTGGTAACTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAGgtgagaagggtcccagtgaggtctggatgaggtaggggggatgcatgcat #### Tm7sf2_ID1417_3 --> 0 - 1 Original Alignment GTGGCCGAAGGC-CTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATg ccctgggaagttatcctcggccttttagtgctccatcctttcctttttagGTGGCCGAAGGCCCTGGAACTGAAGGACAAGAGTCGCCTGCGTTACCCTATTAATggtaaaaggggttcccccccctccacaaatcacagttaaggtgtgggttcc Alignment from CESAR GTGGCCGAAGGC-CTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATg ccctgggaagttatcctcggccttttagtgctccatcctttcctttttagGTGGCCGAAGGCCCTGGAACTGAAGGACAAGAGTCGCCTGCGTTACCCTATTAATggtaaaaggggttcccccccctccacaaatcacagttaaggtgtgggttcc Alignment from Spaln_aa2Genome -------GAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAAT ccctgggaagttatcctcggccttttagtgctccatcctttcctttttagGTGGCCGAAGGCCCTGGAACTGAAGGACAAGAGTCGCCTGCGTTACCCTATTAATGgtaaaaggggttcccccccctccacaaatcacagttaaggtgtgggttcc Alignment from Spaln_nt2Genome GTGGCCGAAGGCC-TGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG ccctgggaagttatcctcggccttttagtgctccatcctttcctttttagGTGGCCGAAGGCCCTGGAACTGAAGGACAAGAGTCGCCTGCGTTACCCTATTAATGgtaaaaggggttcccccccctccacaaatcacagttaaggtgtgggttcc Alignment from Pairagon GTGGCCGAAGG-CCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG ccctgggaagttatcctcggccttttagtgctccatcctttcctttttagGTGGCCGAAGGCCCTGGAACTGAAGGACAAGAGTCGCCTGCGTTACCCTATTAATGgtaaaaggggttcccccccctccacaaatcacagttaaggtgtgggttcc Alignment from Exonerate_protein2genome GTGGCCGAAGGC-CTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG ccctgggaagttatcctcggccttttagtgctccatcctttcctttttagGTGGCCGAAGGCCCTGGAACTGAAGGACAAGAGTCGCCTGCGTTACCCTATTAATGgtaaaaggggttcccccccctccacaaatcacagttaaggtgtgggttcc Alignment from Exonerate_coding2genome GTGGCCGAAGGCC-TGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG ccctgggaagttatcctcggccttttagtgctccatcctttcctttttagGTGGCCGAAGGCCCTGGAACTGAAGGACAAGAGTCGCCTGCGTTACCCTATTAATGgtaaaaggggttcccccccctccacaaatcacagttaaggtgtgggttcc Alignment from GeneWise ----------GGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG ccctgggaagttatcctcggccttttagtgctccatcctttcctttttagGTGGCCGAAGGCCCTGGAACTGAAGGACAAGAGTCGCCTGCGTTACCCTATTAATGgtaaaaggggttcccccccctccacaaatcacagttaaggtgtgggttcc #### Tm7sf2_ID1418_2 --> 2 - 0 Original Alignment gcGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGC-CTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagctcttggaagcagtcatgctaatagttgttgttatcttttaggcGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCCCACCTGCTCCTGGCCGCTCGCTCAGGGCCAGCGCGCCTCCTGGCCCTACCAGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTACTGTTGTTCATCTGGCTCGGCCCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAAGgtaactgatctgttgcaacacaccagggagaaggggcagggagggctgga Alignment from CESAR gcGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGC-CTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagctcttggaagcagtcatgctaatagttgttgttatcttttaggcGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCCCACCTGCTCCTGGCCGCTCGCTCAGGGCCAGCGCGCCTCCTGGCCCTACCAGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTACTGTTGTTCATCTGGCTCGGCCCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAAGgtaactgatctgttgcaacacaccagggagaaggggcagggagggctgga Alignment from Spaln_aa2Genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGC-CTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagctcttggaagcagtcatgctaatagttgttgttatcttttagGCGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCCCACCTGCTCCTGGCCGCTCGCTCAGGGCCAGCGCGCCTCCTGGCCCTACCAGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTACTGTTGTTCATCTGGCTCGGCcCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAAGgtaactgatctgttgcaacacaccagggagaaggggcagggagggctgga Alignment from Spaln_nt2Genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGC-CTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagctcttggaagcagtcatgctaatagttgttgttatcttttagGCGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCCCACCTGCTCCTGGCCGCTCGCTCAGGGCCAGCGCGCCTCCTGGCCCTACCAGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTACTGTTGTTCATCTGGCTCGGCCCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAAGgtaactgatctgttgcaacacaccagggagaaggggcagggagggctgga Alignment from Pairagon GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGG-CCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagctcttggaagcagtcatgctaatagttgttgttatcttttagGCGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCCCACCTGCTCCTGGCCGCTCGCTCAGGGCCAGCGCGCCTCCTGGCCCTACCAGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTACTGTTGTTCATCTGGCTCGGCCCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAAGgtaactgatctgttgcaacacaccagggagaaggggcagggagggctgga Alignment from Exonerate_protein2genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGC-CTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagctcttggaagcagtcatgctaatagttgttgttatcttttagGCGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCCCACCTGCTCCTGGCCGCTCGCTCAGGGCCAGCGCGCCTCCTGGCCCTACCAGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTACTGTTGTTCATCTGGCTCGGCCCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAAGgtaactgatctgttgcaacacaccagggagaaggggcagggagggctgga Alignment from Exonerate_coding2genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCC-TGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagctcttggaagcagtcatgctaatagttgttgttatcttttagGCGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCCCACCTGCTCCTGGCCGCTCGCTCAGGGCCAGCGCGCCTCCTGGCCCTACCAGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTACTGTTGTTCATCTGGCTCGGCCCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAAGgtaactgatctgttgcaacacaccagggagaaggggcagggagggctgga Alignment from GeneWise GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGC-CTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagagagctcttggaagcagtcatgctaatagttgttgttatcttttagGCGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCCCACCTGCTCCTGGCCGCTCGCTCAGGGCCAGCGCGCCTCCTGGCCCTACCAGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTACTGTTGTTCATCTGGCTCGGCCCTGCAGGTGGCACTCTATTTGCTGCCTGCATGCAAGgtaactgatctgttgcaacacaccagggagaaggggcagggagggctgga #### Tmem179b_ID2369_4 --> 1 - 0 Original Alignment cTGCTCTGAAGCCCAG-AAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA catcctccccaccccttctaccaacctgttgttaccatgtgtgcttccagcTGCTCTGAAGCCCAGCAAGACCGCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAAgtaacccacagggatacaccaagattaagcaactgtagcttaagtgtgtt Alignment from CESAR cTGCTCTGAAGCCCAG-AAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA catcctccccaccccttctaccaacctgttgttaccatgtgtgcttccagcTGCTCTGAAGCCCAGCAAGACCGCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAAgtaacccacagggatacaccaagattaagcaactgtagcttaagtgtgtt Alignment from Spaln_aa2Genome CTGCTCTGAAGCCCAG-AAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA catcctccccaccccttctaccaacctgttgttaccatgtgtgcttccagCTGCTCTGAAGCCCAGcAAGACCGCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAAgtaacccacagggatacaccaagattaagcaactgtagcttaagtgtgtt Alignment from Spaln_nt2Genome CTGCTCTGAAGCCCAGAAA-ACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA catcctccccaccccttctaccaacctgttgttaccatgtgtgcttccagCTGCTCTGAAGCCCAGCAAGACCGCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAAgtaacccacagggatacaccaagattaagcaactgtagcttaagtgtgtt Alignment from Pairagon CTGCTCTGAAGCCCAG-AAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA catcctccccaccccttctaccaacctgttgttaccatgtgtgcttccagCTGCTCTGAAGCCCAGCAAGACCGCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAAgtaacccacagggatacaccaagattaagcaactgtagcttaagtgtgtt Alignment from Exonerate_protein2genome CTGCTCTGAAGCCCAG-AAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA catcctccccaccccttctaccaacctgttgttaccatgtgtgcttccagCTGCTCTGAAGCCCAGCAAGACCGCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAAgtaacccacagggatacaccaagattaagcaactgtagcttaagtgtgtt Alignment from Exonerate_coding2genome CTGCTCTGAAGCCCAG-AAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA catcctccccaccccttctaccaacctgttgttaccatgtgtgcttccagCTGCTCTGAAGCCCAGCAAGACCGCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAAgtaacccacagggatacaccaagattaagcaactgtagcttaagtgtgtt Alignment from GeneWise CTGCTCTGAAGCCCAG-AAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA catcctccccaccccttctaccaacctgttgttaccatgtgtgcttccagCTGCTCTGAAGCCCAGCAAGACCGCATGGACACCTTCAGGAACTGCTGTGCAGTTTTACTCCAACCTACATACTGCTGAAgtaacccacagggatacaccaagattaagcaactgtagcttaagtgtgtt #### Tmem179b_ID2371_2 --> 0 - 2 Original Alignment GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCT-GGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACag gctacatctcgggtgctgaactaaatgggtaatgtttcctccctttgtagGGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTCGCCGCACTCAATGGCTCCTCTCTAGCTTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCCCGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTTTTCTGGGTCTACAGCAGCTGCATA---GATTCCCACaggtattggcccatgacaaagggctgagtttgaggtgaatcccacctcggct Alignment from CESAR GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCT-GGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACag gctacatctcgggtgctgaactaaatgggtaatgtttcctccctttgtagGGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTCGCCGCACTCAATGGCTCCTCTCTAGCTTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCCCGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTTTTCTGGGTCTACAGCAGCTGCATA---GATTCCCACaggtattggcccatgacaaagggctgagtttgaggtgaatcccacctcggct Alignment from Spaln_aa2Genome GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCT-GGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG gctacatctcgggtgctgaactaaatgggtaatgtttcctccctttgtagGGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTCGCCGCACTCAATGGCTCCTCTCTAGCTTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCCcGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTTTTCTGGGTCTACAGCAGCTGCATA---GATTCCCACAGgtattggcccatgacaaagggctgagtttgaggtgaatcccacctcggct Alignment from Spaln_nt2Genome GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCT-GGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG gctacatctcgggtgctgaactaaatgggtaatgtttcctccctttgtagGGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTCGCCGCACTCAATGGCTCCTCTCTAGCTTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCCCGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTTTTCTGGGTCTACAGCAGCTGCAT---AGATTCCCACAGgtattggcccatgacaaagggctgagtttgaggtgaatcccacctcggct Alignment from Pairagon GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGG-CTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG gctacatctcgggtgctgaactaaatgggtaatgtttcctccctttgtagGGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTCGCCGCACTCAATGGCTCCTCTCTAGCTTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCCCGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTTTTCTGGGTCTACAGCAGCTGCAT---AGATTCCCACAGgtattggcccatgacaaagggctgagtttgaggtgaatcccacctcggct Alignment from Exonerate_protein2genome GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCT-GGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG gctacatctcgggtgctgaactaaatgggtaatgtttcctccctttgtagGGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTCGCCGCACTCAATGGCTCCTCTCTAGCTTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCCCGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTTTTCTGGGTCTACAGCAGCTGCATA---GATTCCCACAGgtattggcccatgacaaagggctgagtttgaggtgaatcccacctcggct Alignment from Exonerate_coding2genome GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCT-GGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG gctacatctcgggtgctgaactaaatgggtaatgtttcctccctttgtagGGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTCGCCGCACTCAATGGCTCCTCTCTAGCTTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCCCGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTTTTCTGGGTCTACAGCAGCTGCATA---GATTCCCACAGgtattggcccatgacaaagggctgagtttgaggtgaatcccacctcggct Alignment from GeneWise GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTG-GCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG gctacatctcgggtgctgaactaaatgggtaatgtttcctccctttgtagGGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTCGCCGCACTCAATGGCTCCTCTCTAGCTTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCCCGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTTTTCTGGGTCTACAGCAGCTGCATA---GATTCCCACAGgtattggcccatgacaaagggctgagtttgaggtgaatcccacctcggct #### Tmem180_ID9861_3 --> 1 - 2 Original Alignment gTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTG-GCACTGTCCTTCCTGGCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTgg ggccgccttggtgtaaaggttacctcctttttcttgctttaattttacaggTCAGGAGCAGGGCTCTCCTCAAGAGACGTAGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCACTGCTGCGCACTGTCCTTCCTCGCCTTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTATTGTGCCTGTGCCTTTATGATGGCTTCCTGACACTTGTGGACCTCCACCACCATGCCTTGCTAGCTGACCTGGCGCTCTCATCCCATGACCGCACCCACCTCAACTTTTATTGCTCCCTCTTCAGTGCAGCTGGTTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCCTGCCTTCTGTGTGGTACTTGCTGCCGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGTCCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTgggtatccgactagccttgggttactatgctcagagcctgattttatcaccc Alignment from CESAR gTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTG-GCACTGTCCTTCCTGGCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTgg ggccgccttggtgtaaaggttacctcctttttcttgctttaattttacaggTCAGGAGCAGGGCTCTCCTCAAGAGACGTAGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCACTGCTGCGCACTGTCCTTCCTCGCCTTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTATTGTGCCTGTGCCTTTATGATGGCTTCCTGACACTTGTGGACCTCCACCACCATGCCTTGCTAGCTGACCTGGCGCTCTCATCCCATGACCGCACCCACCTCAACTTTTATTGCTCCCTCTTCAGTGCAGCTGGTTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCCTGCCTTCTGTGTGGTACTTGCTGCCGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGTCCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTgggtatccgactagccttgggttactatgctcagagcctgattttatcaccc Alignment from Spaln_aa2Genome GTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTG-GCACTGTCCTTCCTGGCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGG ggccgccttggtgtaaaggttacctcctttttcttgctttaattttacagGTCAGGAGCAGGGCTCTCCTCAAGAGACGTAGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCACTGCTGcGCACTGTCCTTCCTCGCCTTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTATTGTGCCTGTGCCTTTATGATGGCTTCCTGACACTTGTGGACCTCCACCACCATGCCTTGCTAGCTGACCTGGCGCTCTCATCCCATGACCGCACCCACCTCAACTTTTATTGCTCCCTCTTCAGTGCAGCTGGTTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCCTGCCTTCTGTGTGGTACTTGCTGCCGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGTCCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGGgtatccgactagccttgggttactatgctcagagcctgattttatcaccc Alignment from Spaln_nt2Genome GTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTG-GCACTGTCCTTCCTGGCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGG ggccgccttggtgtaaaggttacctcctttttcttgctttaattttacagGTCAGGAGCAGGGCTCTCCTCAAGAGACGTAGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCACTGCTGCGCACTGTCCTTCCTCGCCTTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTATTGTGCCTGTGCCTTTATGATGGCTTCCTGACACTTGTGGACCTCCACCACCATGCCTTGCTAGCTGACCTGGCGCTCTCATCCCATGACCGCACCCACCTCAACTTTTATTGCTCCCTCTTCAGTGCAGCTGGTTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCCTGCCTTCTGTGTGGTACTTGCTGCCGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGTCCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGGgtatccgactagccttgggttactatgctcagagcctgattttatcaccc Alignment from Pairagon GTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTG-GCACTGTCCTTCCTGGCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGG ggccgccttggtgtaaaggttacctcctttttcttgctttaattttacagGTCAGGAGCAGGGCTCTCCTCAAGAGACGTAGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCACTGCTGCGCACTGTCCTTCCTCGCCTTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTATTGTGCCTGTGCCTTTATGATGGCTTCCTGACACTTGTGGACCTCCACCACCATGCCTTGCTAGCTGACCTGGCGCTCTCATCCCATGACCGCACCCACCTCAACTTTTATTGCTCCCTCTTCAGTGCAGCTGGTTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCCTGCCTTCTGTGTGGTACTTGCTGCCGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGTCCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGGgtatccgactagccttgggttactatgctcagagcctgattttatcaccc Alignment from Exonerate_protein2genome GTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTG-GCACTGTCCTTCCTGGCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGG ggccgccttggtgtaaaggttacctcctttttcttgctttaattttacagGTCAGGAGCAGGGCTCTCCTCAAGAGACGTAGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCACTGCTGCGCACTGTCCTTCCTCGCCTTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTATTGTGCCTGTGCCTTTATGATGGCTTCCTGACACTTGTGGACCTCCACCACCATGCCTTGCTAGCTGACCTGGCGCTCTCATCCCATGACCGCACCCACCTCAACTTTTATTGCTCCCTCTTCAGTGCAGCTGGTTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCCTGCCTTCTGTGTGGTACTTGCTGCCGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGTCCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGGgtatccgactagccttgggttactatgctcagagcctgattttatcaccc Alignment from Exonerate_coding2genome GTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTG-GCACTGTCCTTCCTGGCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGG ggccgccttggtgtaaaggttacctcctttttcttgctttaattttacagGTCAGGAGCAGGGCTCTCCTCAAGAGACGTAGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCACTGCTGCGCACTGTCCTTCCTCGCCTTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTATTGTGCCTGTGCCTTTATGATGGCTTCCTGACACTTGTGGACCTCCACCACCATGCCTTGCTAGCTGACCTGGCGCTCTCATCCCATGACCGCACCCACCTCAACTTTTATTGCTCCCTCTTCAGTGCAGCTGGTTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCCTGCCTTCTGTGTGGTACTTGCTGCCGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGTCCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGGgtatccgactagccttgggttactatgctcagagcctgattttatcaccc Alignment from GeneWise GTCAGGAGCAGGGCTCTCCTCCAGAGACGTGGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCGCTGCTG-GCACTGTCCTTCCTGGCATTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTACTGTGCCTGTGCCTTTATGATGGCTTCCTGACGCTCGTGGACCTCCACCACCATGCCTTGCTGGCCGACCTGGCGCTCTCATCCCACGACCGCACCCACCTCAACTTTTACTGCTCCCTCTTCAGTGCAGCTGGCTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCGTGCCTTCTGTGTGGTACTAGCTGCTGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGACCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGG ggccgccttggtgtaaaggttacctcctttttcttgctttaattttacagGTCAGGAGCAGGGCTCTCCTCAAGAGACGTAGTGCTGACCCGGGTCCGGGCTCTGGGCTGGCATGGGCCACTGCTGCGCACTGTCCTTCCTCGCCTTCTGGGTGCCCTGGGCCCCTGCTGGCTTGCAATTCTTATTGTGCCTGTGCCTTTATGATGGCTTCCTGACACTTGTGGACCTCCACCACCATGCCTTGCTAGCTGACCTGGCGCTCTCATCCCATGACCGCACCCACCTCAACTTTTATTGCTCCCTCTTCAGTGCAGCTGGTTCCTTGTCAGTCTTCGCCTCCTACGCCTTTTGGAACAAGGAGGACTTCTCCTCCTTCCCTGCCTTCTGTGTGGTACTTGCTGCCGGCTCTGGGCTGGGCTTTCTGGGAACCACACAATTATTGAAGCGGCAGATTGAAGCGTCCAGAAGGGACAGGGGTTGCCCGGGCCTGGACCTGGATGGTGGgtatccgactagccttgggttactatgctcagagcctgattttatcaccc #### Trim8_ID9936_5 --> 1 - 1 Original Alignment gACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCT-AAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAg atgggtgacttgcccccctcacagctgacacctctgcctattcttcccaggACCCAGACCTGCACGAGCAGCAGCCTTTCTCCCCCTCAAGATTGGCCACCTGAACTCCAAGCTGTTCCTGAATGAGGTGACCAAGAAGGAGAAGCAGTTGCGGAAGATGCTCGAAggtaaggcgttaaaggcctttgggcaggggtgatggccagccagcacccac Alignment from CESAR gACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCT-AAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAg atgggtgacttgcccccctcacagctgacacctctgcctattcttcccaggACCCAGACCTGCACGAGCAGCAGCCTTTCTCCCCCTCAAGATTGGCCACCTGAACTCCAAGCTGTTCCTGAATGAGGTGACCAAGAAGGAGAAGCAGTTGCGGAAGATGCTCGAAggtaaggcgttaaaggcctttgggcaggggtgatggccagccagcacccac Alignment from Spaln_aa2Genome GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCT-AAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG atgggtgacttgcccccctcacagctgacacctctgcctattcttcccagGACCCAGACCTGCACGAGCAGCAGCCTTTCTCCCCCTcAAGATTGGCCACCTGAACTCCAAGCTGTTCCTGAATGAGGTGACCAAGAAGGAGAAGCAGTTGCGGAAGATGCTCGAAGgtaaggcgttaaaggcctttgggcaggggtgatggccagccagcacccac Alignment from Spaln_nt2Genome GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCT-AAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG atgggtgacttgcccccctcacagctgacacctctgcctattcttcccagGACCCAGACCTGCACGAGCAGCAGCCTTTCTCCCCCTCAAGATTGGCCACCTGAACTCCAAGCTGTTCCTGAATGAGGTGACCAAGAAGGAGAAGCAGTTGCGGAAGATGCTCGAAGgtaaggcgttaaaggcctttgggcaggggtgatggccagccagcacccac Alignment from Pairagon GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCT-AAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG atgggtgacttgcccccctcacagctgacacctctgcctattcttcccagGACCCAGACCTGCACGAGCAGCAGCCTTTCTCCCCCTCAAGATTGGCCACCTGAACTCCAAGCTGTTCCTGAATGAGGTGACCAAGAAGGAGAAGCAGTTGCGGAAGATGCTCGAAGgtaaggcgttaaaggcctttgggcaggggtgatggccagccagcacccac Alignment from Exonerate_protein2genome GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCT-AAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG atgggtgacttgcccccctcacagctgacacctctgcctattcttcccagGACCCAGACCTGCACGAGCAGCAGCCTTTCTCCCCCTCAAGATTGGCCACCTGAACTCCAAGCTGTTCCTGAATGAGGTGACCAAGAAGGAGAAGCAGTTGCGGAAGATGCTCGAAGgtaaggcgttaaaggcctttgggcaggggtgatggccagccagcacccac Alignment from Exonerate_coding2genome GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCT-AAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG atgggtgacttgcccccctcacagctgacacctctgcctattcttcccagGACCCAGACCTGCACGAGCAGCAGCCTTTCTCCCCCTCAAGATTGGCCACCTGAACTCCAAGCTGTTCCTGAATGAGGTGACCAAGAAGGAGAAGCAGTTGCGGAAGATGCTCGAAGgtaaggcgttaaaggcctttgggcaggggtgatggccagccagcacccac Alignment from GeneWise AACACCAAGTCTGTGAAAATCCTAATGGACAGGACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCT-AAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG gacttgcccccctcacagCTGACACCTCTGCCT------ATTCTTCCCAGGACCCAGACCTGCACGAGCAGCAGCCTTTCTCCCCCTCAAGATTGGCCACCTGAACTCCAAGCTGTTCCTGAATGAGGTGACCAAGAAGGAGAAGCAGTTGCGGAAGATGCTCGAAGgtaaggcgttaaaggcctttgggcaggggtgatggccagccagcacccac #### Trmt112_ID1861_2 --> 0 - 0 Original Alignment GCCACTGAGGTCCGCATCAACCCCGTG-GAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC gacctggacctacctcactgaatgtttttgacactccttctctcctgcagGCCACTGAGGTCCGCATCAACCCTGTGCGAGTTCAACCCAGAGTTTGTGGCGCGTATGATCCCCAAGGTGGAGTGGGCAGCACTTGTCCAGGCTGCAGACACCgtgagaaccctgcccttcctgttgtaccttaggggcaggctcaggctctg Alignment from CESAR GCCACTGAGGTCCGCATCAACCCCGTG-GAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC gacctggacctacctcactgaatgtttttgacactccttctctcctgcagGCCACTGAGGTCCGCATCAACCCTGTGCGAGTTCAACCCAGAGTTTGTGGCGCGTATGATCCCCAAGGTGGAGTGGGCAGCACTTGTCCAGGCTGCAGACACCgtgagaaccctgcccttcctgttgtaccttaggggcaggctcaggctctg Alignment from Spaln_aa2Genome GCCACTGAGGTCCGCATCAACCCCGTG-GAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC gacctggacctacctcactgaatgtttttgacactccttctctcctgcagGCCACTGAGGTCCGCATCAACCCTGTGcGAGTTCAACCCAGAGTTTGTGGCGCGTATGATCCCCAAGGTGGAGTGGGCAGCACTTGTCCAGGCTGCAGACACCgtgagaaccctgcccttcctgttgtaccttaggggcaggctcaggctctg Alignment from Spaln_nt2Genome GCCACTGAGGTCCGCATCAACCCCGTG-GAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC gacctggacctacctcactgaatgtttttgacactccttctctcctgcagGCCACTGAGGTCCGCATCAACCCTGTGCGAGTTCAACCCAGAGTTTGTGGCGCGTATGATCCCCAAGGTGGAGTGGGCAGCACTTGTCCAGGCTGCAGACACCgtgagaaccctgcccttcctgttgtaccttaggggcaggctcaggctctg Alignment from Pairagon GCCACTGAGGTCCGCATCAACCCCGTG-GAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC gacctggacctacctcactgaatgtttttgacactccttctctcctgcagGCCACTGAGGTCCGCATCAACCCTGTGCGAGTTCAACCCAGAGTTTGTGGCGCGTATGATCCCCAAGGTGGAGTGGGCAGCACTTGTCCAGGCTGCAGACACCgtgagaaccctgcccttcctgttgtaccttaggggcaggctcaggctctg Alignment from Exonerate_protein2genome GCCACTGAGGTCCGCATCAACCCCGTG-GAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC gacctggacctacctcactgaatgtttttgacactccttctctcctgcagGCCACTGAGGTCCGCATCAACCCTGTGCGAGTTCAACCCAGAGTTTGTGGCGCGTATGATCCCCAAGGTGGAGTGGGCAGCACTTGTCCAGGCTGCAGACACCgtgagaaccctgcccttcctgttgtaccttaggggcaggctcaggctctg Alignment from Exonerate_coding2genome GCCACTGAGGTCCGCATCAACCCCGTG-GAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC gacctggacctacctcactgaatgtttttgacactccttctctcctgcagGCCACTGAGGTCCGCATCAACCCTGTGCGAGTTCAACCCAGAGTTTGTGGCGCGTATGATCCCCAAGGTGGAGTGGGCAGCACTTGTCCAGGCTGCAGACACCgtgagaaccctgcccttcctgttgtaccttaggggcaggctcaggctctg Alignment from GeneWise GCCACTGAGGTCCGCATCAACCCC-GTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC gacctggacctacctcactgaatgtttttgacactccttctctcctgcagGCCACTGAGGTCCGCATCAACCCTGTGCGAGTTCAACCCAGAGTTTGTGGCGCGTATGATCCCCAAGGTGGAGTGGGCAGCACTTGTCCAGGCTGCAGACACCgtgagaaccctgcccttcctgttgtaccttaggggcaggctcaggctctg #### Trmt112_ID1862_3 --> 0 - 0 Original Alignment TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGC-TATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG aggccttggtgtttgtgtgcctactgacaaaaaaaatttcttaattaaagTTGAACTTGGCCGAGGTGCCCAGAGAGCCGACTGAAGGCCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCATGTGTTGCTTGAGgtcggtatcctggggcattgcctgcccaggcctcccatggttaccagtgc Alignment from CESAR TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGC-TATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG aggccttggtgtttgtgtgcctactgacaaaaaaaatttcttaattaaagTTGAACTTGGCCGAGGTGCCCAGAGAGCCGACTGAAGGCCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCATGTGTTGCTTGAGgtcggtatcctggggcattgcctgcccaggcctcccatggttaccagtgc Alignment from Spaln_aa2Genome TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGC-TATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG aggccttggtgtttgtgtgcctactgacaaaaaaaatttcttaattaaagTTGAACTTGGCCGAGGTGCCCAGAGAGCCGACTGAAGGCcTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCATGTGTTGCTTGAGgtcggtatcctggggcattgcctgcccaggcctcccatggttaccagtgc Alignment from Spaln_nt2Genome TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGG-CTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG aggccttggtgtttgtgtgcctactgacaaaaaaaatttcttaattaaagTTGAACTTGGCCGAGGTGCCCAGAGAGCCGACTGAAGGCCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCATGTGTTGCTTGAGgtcggtatcctggggcattgcctgcccaggcctcccatggttaccagtgc Alignment from Pairagon TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGG-CTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG aggccttggtgtttgtgtgcctactgacaaaaaaaatttcttaattaaagTTGAACTTGGCCGAGGTGCCCAGAGAGCCGACTGAAGGCCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCATGTGTTGCTTGAGgtcggtatcctggggcattgcctgcccaggcctcccatggttaccagtgc Alignment from Exonerate_protein2genome TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGC-TATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG aggccttggtgtttgtgtgcctactgacaaaaaaaatttcttaattaaagTTGAACTTGGCCGAGGTGCCCAGAGAGCCGACTGAAGGCCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCATGTGTTGCTTGAGgtcggtatcctggggcattgcctgcccaggcctcccatggttaccagtgc Alignment from Exonerate_coding2genome TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGC-TATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG aggccttggtgtttgtgtgcctactgacaaaaaaaatttcttaattaaagTTGAACTTGGCCGAGGTGCCCAGAGAGCCGACTGAAGGCCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCATGTGTTGCTTGAGgtcggtatcctggggcattgcctgcccaggcctcccatggttaccagtgc Alignment from GeneWise TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAA-GGCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAGGTT----------------------------------------------- aggccttggtgtttgtgtgcctactgacaaaaaaaatttcttaattaaagTTGAACTTGGCCGAGGTGCCCAGAGAGCCGACTGAAGGCCTATGAGCACGACGAGACATTTTTGAGGAAGATGCACCATGTGTTGCTTGAGGTCGGTATCCTGGGGCATTGCCTGCCCAGGCCTCCCATGGTTACCAGTGC #### Trpt1_ID1981_4 --> 0 - 1 Original Alignment GTCCCTGAGTTG-GAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCg cagtgcatgaaaggggtcccactgctgcagcctctgttttctgtttgtagGTCCCTGAGTTGCGAACTGACACCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCCATTCTACTAAAGGGTTTGTCACGCCAAGGAAGGACACGCATCCACCTGGCCTCAGGATTGCCA---GACCCTGGTGTTATCAGCggtgagtgtcaccattacctagtctctcctccctggtctccaccaaaggtc Alignment from CESAR GTCCCTGAGTTG-GAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCg cagtgcatgaaaggggtcccactgctgcagcctctgttttctgtttgtagGTCCCTGAGTTGCGAACTGACACCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCCATTCTACTAAAGGGTTTGTCACGCCAAGGAAGGACACGCATCCACCTGGCCTCAGGATTGCCA---GACCCTGGTGTTATCAGCggtgagtgtcaccattacctagtctctcctccctggtctccaccaaaggtc Alignment from Spaln_aa2Genome GTCCCTGAGTTG-GAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG cagtgcatgaaaggggtcccactgctgcagcctctgttttctgtttgtagGTCCCTGAGTTGcGAACTGACACCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCCATTCTACTAAAGGGTTTGTCACGCCAAGGAAGGACACGCATCCACCTGGCCTCAGGATTGCCA---GACCCTGGTGTTATCAGCGgtgagtgtcaccattacctagtctctcctccctggtctccaccaaaggtc Alignment from Spaln_nt2Genome GTCCCTGAGTTG-GAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG cagtgcatgaaaggggtcccactgctgcagcctctgttttctgtttgtagGTCCCTGAGTTGCGAACTGACACCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCCATTCTACTAAAGGGTTTGTCACGCCAAGGAAGGACACGCATCCACCTGGCCTCAGGATTGCC---AGACCCTGGTGTTATCAGCGgtgagtgtcaccattacctagtctctcctccctggtctccaccaaaggtc Alignment from Pairagon GTCCCTGAGTTG-GAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG cagtgcatgaaaggggtcccactgctgcagcctctgttttctgtttgtagGTCCCTGAGTTGCGAACTGACACCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCCATTCTACTAAAGGGTTTGTCACGCCAAGGAAGGACACGCATCCACCTGGCCTCAGGATTGCC---AGACCCTGGTGTTATCAGCGgtgagtgtcaccattacctagtctctcctccctggtctccaccaaaggtc Alignment from Exonerate_protein2genome GTCCCTGAGTTG-GAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG cagtgcatgaaaggggtcccactgctgcagcctctgttttctgtttgtagGTCCCTGAGTTGCGAACTGACACCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCCATTCTACTAAAGGGTTTGTCACGCCAAGGAAGGACACGCATCCACCTGGCCTCAGGATTGCCA---GACCCTGGTGTTATCAGCGgtgagtgtcaccattacctagtctctcctccctggtctccaccaaaggtc Alignment from Exonerate_coding2genome GTCCCTGAGTTG-GAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG cagtgcatgaaaggggtcccactgctgcagcctctgttttctgtttgtagGTCCCTGAGTTGCGAACTGACACCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCCATTCTACTAAAGGGTTTGTCACGCCAAGGAAGGACACGCATCCACCTGGCCTCAGGATTGCCA---GACCCTGGTGTTATCAGCGgtgagtgtcaccattacctagtctctcctccctggtctccaccaaaggtc Alignment from GeneWise ------------------CCTGAGTTG------------------------------------GAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG CAGTGCATGAAAGGGGTCCCACTGCTGCAGCCTCTGTTTTCTGTTTGTAGGTCCCTGAGTTGCGAACTGACACCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCCATTCTACTAAAGGGTTTGTCACGCCAAGGAAGGACACGCATCCACCTGGCCTCAGGATTGCCA---GACCCTGGTGTTATCAGCGgtgagtgtcaccattacctagtctctcctccctggtctccaccaaaggtc #### Trpt1_ID1983_6 --> 2 - 1 Original Alignment atGGAATCCCTTTCTTCTGCTCCGCCAATGGT-GTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAc atggaagggcactatcatgtggtcacattctattttctttatggctctagatGGAATCCCTTTCTTCTGCTTCGCCAATGGGCGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTTAAGGAGGCCCTGCAGCTTCGACCTACAcgtgtgtaaacaaaccaccccccaccccggtctgaagcctgaggccttctc Alignment from CESAR atGGAATCCCTTTCTTCTGCTCCGCCAAT-GGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAc atggaagggcactatcatgtggtcacattctattttctttatggctctagatGGAATCCCTTTCTTCTGCTTCGCCAATGGGCGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTTAAGGAGGCCCTGCAGCTTCGACCTACAcgtgtgtaaacaaaccaccccccaccccggtctgaagcctgaggccttctc Alignment from Spaln_aa2Genome ATGGAATCCCTTTCTTCTGCTCCGCCAATGGT-GTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAC atggaagggcactatcatgtggtcacattctattttctttatggctctagATGGAATCCCTTTCTTCTGCTTCGCCAATGGGcGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTTAAGGAGGCCCTGCAGCTTCGACCTACACgtgtgtaaacaaaccaccccccaccccggtctgaagcctgaggccttctc Alignment from Spaln_nt2Genome ATGGAATCCCTTTCTTCTGCTCCGCCAAT-GGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAC atggaagggcactatcatgtggtcacattctattttctttatggctctagATGGAATCCCTTTCTTCTGCTTCGCCAATGGGCGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTTAAGGAGGCCCTGCAGCTTCGACCTACACgtgtgtaaacaaaccaccccccaccccggtctgaagcctgaggccttctc Alignment from Pairagon ATGGAATCCCTTTCTTCTGCTCCGCCAAT-GGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAC atggaagggcactatcatgtggtcacattctattttctttatggctctagATGGAATCCCTTTCTTCTGCTTCGCCAATGGGCGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTTAAGGAGGCCCTGCAGCTTCGACCTACACgtgtgtaaacaaaccaccccccaccccggtctgaagcctgaggccttctc Alignment from Exonerate_protein2genome ATGGAATCCCTTTCTTCTGCTCCGCCAAT-GGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAC atggaagggcactatcatgtggtcacattctattttctttatggctctagATGGAATCCCTTTCTTCTGCTTCGCCAATGGGCGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTTAAGGAGGCCCTGCAGCTTCGACCTACACgtgtgtaaacaaaccaccccccaccccggtctgaagcctgaggccttctc Alignment from Exonerate_coding2genome ATGGAATCCCTTTCTTCTGCTCCGCCAAT-GGTGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAC atggaagggcactatcatgtggtcacattctattttctttatggctctagATGGAATCCCTTTCTTCTGCTTCGCCAATGGGCGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTTAAGGAGGCCCTGCAGCTTCGACCTACACgtgtgtaaacaaaccaccccccaccccggtctgaagcctgaggccttctc Alignment from GeneWise ATGGAATCCCTTTCTTCTGCTCCGCCAATGGT-GTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTCAAGGAGGCCCTGCAGCTTCGACCTACAC atggaagggcactatcatgtggtcacattctattttctttatggctctagATGGAATCCCTTTCTTCTGCTTCGCCAATGGGCGTGATTCTGACTCCAGGGAATGCTGAAGGCTTCCTGCTTCCCAAGTACTTTAAGGAGGCCCTGCAGCTTCGACCTACACgtgtgtaaacaaaccaccccccaccccggtctgaagcctgaggccttctc #### Tut1_ID2555_8 --> 2 - 1 Original Alignment gtGAAGGGGAACAGGTAGAAGTTGATGGCTGGGACTGTAGCTTCCCTAAGGATGCCTCA-AGATTGGAGCCCAGCACCAACGTGGAGCCTCTCa gactctggggtaattggctcttggctgactccttccctcttgctttgcaggtGAAGGGGAACAGGTAGAAGTTGATGGTTGGGACTGTAGCTTCCCTAAGGATGCCTCACAGATTGGAGCCCAGCACCAACGTAGAGCCTCTCagtaagtctggggaacatgctagaaaactgattgtaatgacaggctcaaga Alignment from CESAR gtGAAGGGGAACAGGTAGAAGTTGATGGCTGGGACTGTAGCTTCCCTAAGGATGCCTCA-AGATTGGAGCCCAGCACCAACGTGGAGCCTCTCa gactctggggtaattggctcttggctgactccttccctcttgctttgcaggtGAAGGGGAACAGGTAGAAGTTGATGGTTGGGACTGTAGCTTCCCTAAGGATGCCTCACAGATTGGAGCCCAGCACCAACGTAGAGCCTCTCagtaagtctggggaacatgctagaaaactgattgtaatgacaggctcaaga Alignment from Spaln_aa2Genome GTGAAGGGGAACAGGTAGAAGTTGATGGCTGGGACTGTAGCTTCCCTAAGGATGCCTCA-AGATTGGAGCCCAGCACCAACGTGGAGCCTCTCA gactctggggtaattggctcttggctgactccttccctcttgctttgcagGTGAAGGGGAACAGGTAGAAGTTGATGGTTGGGACTGTAGCTTCCCTAAGGATGCCTCAcAGATTGGAGCCCAGCACCAACGTAGAGCCTCTCAgtaagtctggggaacatgctagaaaactgattgtaatgacaggctcaaga Alignment from Spaln_nt2Genome GTGAAGGGGAACAGGTAGAAGTTGATGGCTGGGACTGTAGCTTCCCTAAGGATGCCTCA-AGATTGGAGCCCAGCACCAACGTGGAGCCTCTCA gactctggggtaattggctcttggctgactccttccctcttgctttgcagGTGAAGGGGAACAGGTAGAAGTTGATGGTTGGGACTGTAGCTTCCCTAAGGATGCCTCACAGATTGGAGCCCAGCACCAACGTAGAGCCTCTCAgtaagtctggggaacatgctagaaaactgattgtaatgacaggctcaaga Alignment from Pairagon GTGAAGGGGAACAGGTAGAAGTTGATGGCTGGGACTGTAGCTTCCCTAAGGATGCCTCA-AGATTGGAGCCCAGCACCAACGTGGAGCCTCTCA gactctggggtaattggctcttggctgactccttccctcttgctttgcagGTGAAGGGGAACAGGTAGAAGTTGATGGTTGGGACTGTAGCTTCCCTAAGGATGCCTCACAGATTGGAGCCCAGCACCAACGTAGAGCCTCTCAgtaagtctggggaacatgctagaaaactgattgtaatgacaggctcaaga Alignment from Exonerate_protein2genome GTGAAGGGGAACAGGTAGAAGTTGATGGCTGGGACTGTAGCTTCCCTAAGGATGCCTCA-AGATTGGAGCCCAGCACCAACGTGGAGCCTCTCA gactctggggtaattggctcttggctgactccttccctcttgctttgcagGTGAAGGGGAACAGGTAGAAGTTGATGGTTGGGACTGTAGCTTCCCTAAGGATGCCTCACAGATTGGAGCCCAGCACCAACGTAGAGCCTCTCAgtaagtctggggaacatgctagaaaactgattgtaatgacaggctcaaga Alignment from Exonerate_coding2genome GTGAAGGGGAACAGGTAGAAGTTGATGGCTGGGACTGTAGCTTCCCTAAGGATGCCTCA-AGATTGGAGCCCAGCACCAACGTGGAGCCTCTCA gactctggggtaattggctcttggctgactccttccctcttgctttgcagGTGAAGGGGAACAGGTAGAAGTTGATGGTTGGGACTGTAGCTTCCCTAAGGATGCCTCACAGATTGGAGCCCAGCACCAACGTAGAGCCTCTCAgtaagtctggggaacatgctagaaaactgattgtaatgacaggctcaaga Alignment from GeneWise GTGAAGGGGAACAGGTAGAAGTTGATGGCTGGGACTGTAGCTTCCCTAAGGATGCC-TCAAGATTGGAGCCCAGCACCAACGTGGAGCCTCTCA gactctggggtaattggctcttggctgactccttccctcttgctttgcagGTGAAGGGGAACAGGTAGAAGTTGATGGTTGGGACTGTAGCTTCCCTAAGGATGCCTCACAGATTGGAGCCCAGCACCAACGTAGAGCCTCTCAgtaagtctggggaacatgctagaaaactgattgtaatgacaggctcaaga #### Ubxn1_ID2438_2 --> 1 - 2 Original Alignment gGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAG-GCTGCGATGGATtg tgactgcccccatggcttgcaggcactacttttctttgaatttttttaaggGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGCGCTGCGATGGCTtggtaaggggacgacctgcacaggtggtgggagattgggagctgctgggcaa Alignment from CESAR gGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAG-GCTGCGATGGATtg tgactgcccccatggcttgcaggcactacttttctttgaatttttttaaggGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGCGCTGCGATGGCTtggtaaggggacgacctgcacaggtggtgggagattgggagctgctgggcaa Alignment from Spaln_aa2Genome GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAG-GCTGCGATGGATTG tgactgcccccatggcttgcaggcactacttttctttgaatttttttaagGGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGcGCTGCGATGGCTTGgtaaggggacgacctgcacaggtggtgggagattgggagctgctgggcaa Alignment from Spaln_nt2Genome GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAG-GCTGCGATGGATTG tgactgcccccatggcttgcaggcactacttttctttgaatttttttaagGGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGCGCTGCGATGGCTTGgtaaggggacgacctgcacaggtggtgggagattgggagctgctgggcaa Alignment from Pairagon GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAG-GCTGCGATGGATTG tgactgcccccatggcttgcaggcactacttttctttgaatttttttaagGGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGCGCTGCGATGGCTTGgtaaggggacgacctgcacaggtggtgggagattgggagctgctgggcaa Alignment from Exonerate_protein2genome GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAG-GCTGCGATGGATTG tgactgcccccatggcttgcaggcactacttttctttgaatttttttaagGGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGCGCTGCGATGGCTTGgtaaggggacgacctgcacaggtggtgggagattgggagctgctgggcaa Alignment from Exonerate_coding2genome GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAG-GCTGCGATGGATTG tgactgcccccatggcttgcaggcactacttttctttgaatttttttaagGGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGCGCTGCGATGGCTTGgtaaggggacgacctgcacaggtggtgggagattgggagctgctgggcaa Alignment from GeneWise GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAG------------------------------------GCTGCGATGGATTGG-------------- tgactgcccccatggcttgcaggcactacttttctttgaatttttttaagGGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATCGAGCGCTGCGATGGCTTGGTAAGGGGACGACCTGCACAGGTGGTGGGAGATTGGGAGCTGCTGGGCAA #### Ubxn1_ID2442_6 --> 1 - 0 Original Alignment aCAAAGGGTTCGAGAAAAAATTGAAAGGGACAAAGCA-GAGAGAGCCAAGAAG gatttgtcttggtccatgtctgacctatcctttgctctcctctcttctagaCAAAGGGCTCGTGAAAAAATTGAAAGGGACAGAGCACGAGAGAGCTAAGAAGgtaagagatcacaaagtcagggtatactggagcatgctggttaatttcct Alignment from CESAR aCAAAGGGTTCGAGAAAAAATTGAAAGGGACAAAGCA-GAGAGAGCCAAGAAG gatttgtcttggtccatgtctgacctatcctttgctctcctctcttctagaCAAAGGGCTCGTGAAAAAATTGAAAGGGACAGAGCACGAGAGAGCTAAGAAGgtaagagatcacaaagtcagggtatactggagcatgctggttaatttcct Alignment from Spaln_aa2Genome ACAAAGGGTTCGAGAAAAAATTGAAAGGGACAAAGCA-GAGAGAGCCAAGAAG gatttgtcttggtccatgtctgacctatcctttgctctcctctcttctagACAAAGGGCTCGTGAAAAAATTGAAAGGGACAGAGCAcGAGAGAGCTAAGAAGgtaagagatcacaaagtcagggtatactggagcatgctggttaatttcct Alignment from Spaln_nt2Genome ACAAAGGGTTCGAGAAAAAATTGAAAGGGACAAAGCA-GAGAGAGCCAAGAAG gatttgtcttggtccatgtctgacctatcctttgctctcctctcttctagACAAAGGGCTCGTGAAAAAATTGAAAGGGACAGAGCACGAGAGAGCTAAGAAGgtaagagatcacaaagtcagggtatactggagcatgctggttaatttcct Alignment from Pairagon ACAAAGGGTTCGAGAAAAAATTGAAAGGGACAAAGCA-GAGAGAGCCAAGAAG gatttgtcttggtccatgtctgacctatcctttgctctcctctcttctagACAAAGGGCTCGTGAAAAAATTGAAAGGGACAGAGCACGAGAGAGCTAAGAAGgtaagagatcacaaagtcagggtatactggagcatgctggttaatttcct Alignment from Exonerate_protein2genome ACAAAGGGTTCGAGAAAAAATTGAAAGGGACAAAGCA-GAGAGAGCCAAGAAG gatttgtcttggtccatgtctgacctatcctttgctctcctctcttctagACAAAGGGCTCGTGAAAAAATTGAAAGGGACAGAGCACGAGAGAGCTAAGAAGgtaagagatcacaaagtcagggtatactggagcatgctggttaatttcct Alignment from Exonerate_coding2genome ACAAAGGGTTCGAGAAAAAATTGAAAGGGACAAAGCA-GAGAGAGCCAAGAAG gatttgtcttggtccatgtctgacctatcctttgctctcctctcttctagACAAAGGGCTCGTGAAAAAATTGAAAGGGACAGAGCACGAGAGAGCTAAGAAGgtaagagatcacaaagtcagggtatactggagcatgctggttaatttcct Alignment from GeneWise ACAAAGGGTTCGAGAAAAAATTGAAAGGGACAAA-GCAGAGAGAGCCAAGAAG gatttgtcttggtccatgtctgacctatcctttgctctcctctcttctagACAAAGGGCTCGTGAAAAAATTGAAAGGGACAGAGCACGAGAGAGCTAAGAAGgtaagagatcacaaagtcagggtatactggagcatgctggttaatttcct #### Unc93b1_ID211_2 --> 0 - 1 Original Alignment TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGC-ACGGGTGTCACCCTTACTTACGGCGTCTACCTGg gcttggagtttgagtggggagccaacaatttttactgtgtgccttctcagTTGGACGAACTCGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGTAAGCGCCTTGGAGTGGTTAAGAATGTGCTGGCAGCCAGCCACGGGTGTCACCCTTACTTATGGCATCTACCTGggtaaggaggacatagtaactctgcttgccctctgcctctacagcttcaaa Alignment from CESAR TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGC-ACGGGTGTCACCCTTACTTACGGCGTCTACCTGg gcttggagtttgagtggggagccaacaatttttactgtgtgccttctcagTTGGACGAACTCGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGTAAGCGCCTTGGAGTGGTTAAGAATGTGCTGGCAGCCAGCCACGGGTGTCACCCTTACTTATGGCATCTACCTGggtaaggaggacatagtaactctgcttgccctctgcctctacagcttcaaa Alignment from Spaln_aa2Genome TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGT-GTCACCCTTACTTACGGCGTCTACCTGG gcttggagtttgagtggggagccaacaatttttactgtgtgccttctcagTTGGACGAACTCGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGTAAGCGCCTTGGAGTGGTTAAGAATGTGCTGGCAGCCAGCCACGGGtGTCACCCTTACTTATGGCATCTACCTGGgtaaggaggacatagtaactctgcttgccctctgcctctacagcttcaaa Alignment from Spaln_nt2Genome TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAG-CACGGGTGTCACCCTTACTTACGGCGTCTACCTGG gcttggagtttgagtggggagccaacaatttttactgtgtgccttctcagTTGGACGAACTCGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGTAAGCGCCTTGGAGTGGTTAAGAATGTGCTGGCAGCCAGCCACGGGTGTCACCCTTACTTATGGCATCTACCTGGgtaaggaggacatagtaactctgcttgccctctgcctctacagcttcaaa Alignment from Pairagon TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAG-CACGGGTGTCACCCTTACTTACGGCGTCTACCTGG gcttggagtttgagtggggagccaacaatttttactgtgtgccttctcagTTGGACGAACTCGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGTAAGCGCCTTGGAGTGGTTAAGAATGTGCTGGCAGCCAGCCACGGGTGTCACCCTTACTTATGGCATCTACCTGGgtaaggaggacatagtaactctgcttgccctctgcctctacagcttcaaa Alignment from Exonerate_protein2genome TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGC-ACGGGTGTCACCCTTACTTACGGCGTCTACCTGG gcttggagtttgagtggggagccaacaatttttactgtgtgccttctcagTTGGACGAACTCGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGTAAGCGCCTTGGAGTGGTTAAGAATGTGCTGGCAGCCAGCCACGGGTGTCACCCTTACTTATGGCATCTACCTGGgtaaggaggacatagtaactctgcttgccctctgcctctacagcttcaaa Alignment from Exonerate_coding2genome TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGC-ACGGGTGTCACCCTTACTTACGGCGTCTACCTGG gcttggagtttgagtggggagccaacaatttttactgtgtgccttctcagTTGGACGAACTCGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGTAAGCGCCTTGGAGTGGTTAAGAATGTGCTGGCAGCCAGCCACGGGTGTCACCCTTACTTATGGCATCTACCTGGgtaaggaggacatagtaactctgcttgccctctgcctctacagcttcaaa Alignment from GeneWise TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCC-AGCACGGGTGTCACCCTTACTTACGGCGTCTACCTGG gcttggagtttgagtggggagccaacaatttttactgtgtgccttctcagTTGGACGAACTCGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGTAAGCGCCTTGGAGTGGTTAAGAATGTGCTGGCAGCCAGCCACGGGTGTCACCCTTACTTATGGCATCTACCTGGgtaaggaggacatagtaactctgcttgccctctgcctctacagcttcaaa #### Unc93b1_ID215_6 --> 0 - 1 Original Alignment TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGAC-CTGAACCACACACTGATCAACGTGCAGAGCTGCg acttggttctcctcctgggctctgacccgaggattcatgtttttctttagTTGAGCTTCACATGTGCCCAACTGCCCATGATTTACTTCCTCAACAACTATCTGTATGACCTTGAACCATACACTGATCAACGTGCAGAGATGTggtaaccccaggggaggggtggaacctcagaagcttgccttcctgttcatg Alignment from CESAR TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGAC-CTGAACCACACACTGATCAACGTGCAGAGCTGCg acttggttctcctcctgggctctgacccgaggattcatgtttttctttagTTGAGCTTCACATGTGCCCAACTGCCCATGATTTACTTCCTCAACAACTATCTGTATGACCTTGAACCATACACTGATCAACGTGCAGAGATGTggtaaccccaggggaggggtggaacctcagaagcttgccttcctgttcatg Alignment from Spaln_aa2Genome TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTG-AACCACACACTGATCAACGTGCAGAGCTGCG acttggttctcctcctgggctctgacccgaggattcatgtttttctttagTTGAGCTTCACATGTGCCCAACTGCCCATGATTTACTTCCTCAACAACTATCTGTATGACCTTgAACCATACACTGATCAACGTGCAGAGATGTGgtaaccccaggggaggggtggaacctcagaagcttgccttcctgttcatg Alignment from Spaln_nt2Genome TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACC-TGAACCACACACTGATCAACGTGCAGAGCTGCG acttggttctcctcctgggctctgacccgaggattcatgtttttctttagTTGAGCTTCACATGTGCCCAACTGCCCATGATTTACTTCCTCAACAACTATCTGTATGACCTTGAACCATACACTGATCAACGTGCAGAGATGTGgtaaccccaggggaggggtggaacctcagaagcttgccttcctgttcatg Alignment from Pairagon TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACC-TGAACCACACACTGATCAACGTGCAGAGCTGCG acttggttctcctcctgggctctgacccgaggattcatgtttttctttagTTGAGCTTCACATGTGCCCAACTGCCCATGATTTACTTCCTCAACAACTATCTGTATGACCTTGAACCATACACTGATCAACGTGCAGAGATGTGgtaaccccaggggaggggtggaacctcagaagcttgccttcctgttcatg Alignment from Exonerate_protein2genome TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGAC-CTGAACCACACACTGATCAACGTGCAGAGCTGCG acttggttctcctcctgggctctgacccgaggattcatgtttttctttagTTGAGCTTCACATGTGCCCAACTGCCCATGATTTACTTCCTCAACAACTATCTGTATGACCTTGAACCATACACTGATCAACGTGCAGAGATGTGgtaaccccaggggaggggtggaacctcagaagcttgccttcctgttcatg Alignment from Exonerate_coding2genome TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGAC-CTGAACCACACACTGATCAACGTGCAGAGCTGCG acttggttctcctcctgggctctgacccgaggattcatgtttttctttagTTGAGCTTCACATGTGCCCAACTGCCCATGATTTACTTCCTCAACAACTATCTGTATGACCTTGAACCATACACTGATCAACGTGCAGAGATGTGgtaaccccaggggaggggtggaacctcagaagcttgccttcctgttcatg Alignment from GeneWise TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGAC-CTGAACCACACACTGATCAACGTGCAGAGCTGCG acttggttctcctcctgggctctgacccgaggattcatgtttttctttagTTGAGCTTCACATGTGCCCAACTGCCCATGATTTACTTCCTCAACAACTATCTGTATGACCTTGAACCATACACTGATCAACGTGCAGAGATGTGgtaaccccaggggaggggtggaacctcagaagcttgccttcctgttcatg #### Vegfb_ID1956_4 --> 0 - 2 Original Alignment ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACAC-AGCCAATGTGAATGCag ggacctgcctcccaccactcactgtctttactgtccactaattcccacagATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACCAGCCAATGTGAATGCaggtgagtgccacgttcaggtcacaaagtgtagcatggggtggggctgctcg Alignment from CESAR ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACAC-AGCCAATGTGAATGCag ggacctgcctcccaccactcactgtctttactgtccactaattcccacagATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACCAGCCAATGTGAATGCaggtgagtgccacgttcaggtcacaaagtgtagcatggggtggggctgctcg Alignment from Spaln_aa2Genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACAC-AGCCAATGTGAATGCAG ggacctgcctcccaccactcactgtctttactgtccactaattcccacagATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACcAGCCAATGTGAATGCAGgtgagtgccacgttcaggtcacaaagtgtagcatggggtggggctgctcg Alignment from Spaln_nt2Genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACA-CAGCCAATGTGAATGCAG ggacctgcctcccaccactcactgtctttactgtccactaattcccacagATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACCAGCCAATGTGAATGCAGgtgagtgccacgttcaggtcacaaagtgtagcatggggtggggctgctcg Alignment from Pairagon ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACA-CAGCCAATGTGAATGCAG ggacctgcctcccaccactcactgtctttactgtccactaattcccacagATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACCAGCCAATGTGAATGCAGgtgagtgccacgttcaggtcacaaagtgtagcatggggtggggctgctcg Alignment from Exonerate_protein2genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACAC-AGCCAATGTGAATGCAG ggacctgcctcccaccactcactgtctttactgtccactaattcccacagATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACCAGCCAATGTGAATGCAGgtgagtgccacgttcaggtcacaaagtgtagcatggggtggggctgctcg Alignment from Exonerate_coding2genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACA-CAGCCAATGTGAATGCAG ggacctgcctcccaccactcactgtctttactgtccactaattcccacagATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACCAGCCAATGTGAATGCAGgtgagtgccacgttcaggtcacaaagtgtagcatggggtggggctgctcg Alignment from GeneWise ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCCAA-- ggacctgcctcccaccactcactgtctttactgtccactaattcccacagATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACCAGCCAATgtgaatgcaggtgagtgccacgttcaggtcacaaagtgtagcatggggtggggctgctcg #### Vegfb_ID1957_3 --> 2 - 0 Original Alignment tgGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGC-AATGTGGTCAAACAACTAGTGCCCAGCTGTGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG gataagaaggagacctgataagaacttactgatccttgctctctgtttagtgGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGGAACTCATGGGCCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGGCCACTGGGCAACACCAAGTCCGAATGCAGgtatgagtgcctatgggtcaggtgtgttgaggggacactgatgtcctatg Alignment from CESAR tgGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGC-AATGTGGTCAAACAACTAGTGCCCAGCTGTGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG gataagaaggagacctgataagaacttactgatccttgctctctgtttagtgGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGGAACTCATGGGCCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGGCCACTGGGCAACACCAAGTCCGAATGCAGgtatgagtgcctatgggtcaggtgtgttgaggggacactgatgtcctatg Alignment from Spaln_aa2Genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGC-AATGTGGTCAAACAACTAGTGCCCAGCTGTGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG gataagaaggagacctgataagaacttactgatccttgctctctgtttagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGGAACTCATGGGCcAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGGCCACTGGGCAACACCAAGTCCGAATGCAGgtatgagtgcctatgggtcaggtgtgttgaggggacactgatgtcctatg Alignment from Spaln_nt2Genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCAT-GGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG gataagaaggagacctgataagaacttactgatccttgctctctgtttagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGGAACTCATGGGCCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGGCCACTGGGCAACACCAAGTCCGAATGCAGgtatgagtgcctatgggtcaggtgtgttgaggggacactgatgtcctatg Alignment from Pairagon TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGG-CAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG gataagaaggagacctgataagaacttactgatccttgctctctgtttagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGGAACTCATGGGCCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGGCCACTGGGCAACACCAAGTCCGAATGCAGgtatgagtgcctatgggtcaggtgtgttgaggggacactgatgtcctatg Alignment from Exonerate_protein2genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGC-AATGTGGTCAAACAACTAGTGCCCAGCTGTGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG gataagaaggagacctgataagaacttactgatccttgctctctgtttagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGGAACTCATGGGCCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGGCCACTGGGCAACACCAAGTCCGAATGCAGgtatgagtgcctatgggtcaggtgtgttgaggggacactgatgtcctatg Alignment from Exonerate_coding2genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCAT-GGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG gataagaaggagacctgataagaacttactgatccttgctctctgtttagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGGAACTCATGGGCCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGGCCACTGGGCAACACCAAGTCCGAATGCAGgtatgagtgcctatgggtcaggtgtgttgaggggacactgatgtcctatg Alignment from GeneWise TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATG-GGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG gataagaaggagacctgataagaacttactgatccttgctctctgtttagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGGAACTCATGGGCCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGGCCACTGGGCAACACCAAGTCCGAATGCAGgtatgagtgcctatgggtcaggtgtgttgaggggacactgatgtcctatg #### Vegfb_ID1958_2 --> 0 - 1 Original Alignment GCCCCTGTGTCCCAGTTTGATGGC-CCCAGCCACCAGAAGAAAg gccagcccttttagagtgcaccttgggctcactgcctctgtctcctgcagGCCCCTGTGTCGCAGTTTGATGGCCCCCAGCCACCAGAAGAAAggtagatatagttatagcttgccaccagccagtacgaagaggggttagcat Alignment from CESAR GCCCCTGTGTCCCAGTTTGATGGC-CCCAGCCACCAGAAGAAAg gccagcccttttagagtgcaccttgggctcactgcctctgtctcctgcagGCCCCTGTGTCGCAGTTTGATGGCCCCCAGCCACCAGAAGAAAggtagatatagttatagcttgccaccagccagtacgaagaggggttagcat Alignment from Spaln_aa2Genome GCCCCTGTGTCCCAGTTTGATGGCCCC-AGCCACCAGAAGAAAG gccagcccttttagagtgcaccttgggctcactgcctctgtctcctgcagGCCCCTGTGTCGCAGTTTGATGGCCCCcAGCCACCAGAAGAAAGgtagatatagttatagcttgccaccagccagtacgaagaggggttagcat Alignment from Spaln_nt2Genome GCCCCTGTGTCCCAGTTTGATGGCCC-CAGCCACCAGAAGAAAG gccagcccttttagagtgcaccttgggctcactgcctctgtctcctgcagGCCCCTGTGTCGCAGTTTGATGGCCCCCAGCCACCAGAAGAAAGgtagatatagttatagcttgccaccagccagtacgaagaggggttagcat Alignment from Pairagon GCCCCTGTGTCCCAGTTTGATGG-CCCCAGCCACCAGAAGAAAG gccagcccttttagagtgcaccttgggctcactgcctctgtctcctgcagGCCCCTGTGTCGCAGTTTGATGGCCCCCAGCCACCAGAAGAAAGgtagatatagttatagcttgccaccagccagtacgaagaggggttagcat Alignment from Exonerate_protein2genome GCCCCTGTGTCCCAGTTTGATGGC-CCCAGCCACCAGAAGAAAG gccagcccttttagagtgcaccttgggctcactgcctctgtctcctgcagGCCCCTGTGTCGCAGTTTGATGGCCCCCAGCCACCAGAAGAAAGgtagatatagttatagcttgccaccagccagtacgaagaggggttagcat Alignment from Exonerate_coding2genome GCCCCTGTGTCCCAGTTTGATGG-CCCCAGCCACCAGAAGAAAG gccagcccttttagagtgcaccttgggctcactgcctctgtctcctgcagGCCCCTGTGTCGCAGTTTGATGGCCCCCAGCCACCAGAAGAAAGgtagatatagttatagcttgccaccagccagtacgaagaggggttagcat Alignment from GeneWise gccagcccttttagagtgcaccttgggctcactgcctctgtctcctgcaggcccctgtgtcgcagtttgatggcccccagccaccagaagaaaggtagatatagttatagcttgccaccagccagtacgaagaggggttagcat #### Vldlr_ID5807_6 --> 2 - 1 Original Alignment ctTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGAT-GGCTCTGATGAAGTCAACTGCAAAAACg cagaagccatttggctgccttcattccagcccctttatctgtacttccagctTCTCAAACCTGCCGACCTGACCAATTTGAATGTGAAGATGGTACCTGTATCCACGGTAGCAGACAATGTAATGGCATCCGAGACTGTGTTGATCGGCTCTGATGAAGTAAACTGTAGAAACagtaagtttctctttccattgtgtttggttaggctattggctacccccgtc Alignment from CESAR ctTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGAT-GGCTCTGATGAAGTCAACTGCAAAAACg cagaagccatttggctgccttcattccagcccctttatctgtacttccagctTCTCAAACCTGCCGACCTGACCAATTTGAATGTGAAGATGGTACCTGTATCCACGGTAGCAGACAATGTAATGGCATCCGAGACTGTGTTGATCGGCTCTGATGAAGTAAACTGTAGAAACagtaagtttctctttccattgtgtttggttaggctattggctacccccgtc Alignment from Spaln_aa2Genome CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGAT-GGCTCTGATGAAGTCAACTGCAAAAACG cagaagccatttggctgccttcattccagcccctttatctgtacttccagCTTCTCAAACCTGCCGACCTGACCAATTTGAATGTGAAGATGGTACCTGTATCCACGGTAGCAGACAATGTAATGGCATCCGAGACTGTGTTGATcGGCTCTGATGAAGTAAACTGTAGAAACAgtaagtttctctttccattgtgtttggttaggctattggctacccccgtc Alignment from Spaln_nt2Genome CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGAT-GGCTCTGATGAAGTCAACTGCAAAAACG cagaagccatttggctgccttcattccagcccctttatctgtacttccagCTTCTCAAACCTGCCGACCTGACCAATTTGAATGTGAAGATGGTACCTGTATCCACGGTAGCAGACAATGTAATGGCATCCGAGACTGTGTTGATCGGCTCTGATGAAGTAAACTGTAGAAACAgtaagtttctctttccattgtgtttggttaggctattggctacccccgtc Alignment from Pairagon CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGAT-GGCTCTGATGAAGTCAACTGCAAAAACG cagaagccatttggctgccttcattccagcccctttatctgtacttccagCTTCTCAAACCTGCCGACCTGACCAATTTGAATGTGAAGATGGTACCTGTATCCACGGTAGCAGACAATGTAATGGCATCCGAGACTGTGTTGATCGGCTCTGATGAAGTAAACTGTAGAAACAgtaagtttctctttccattgtgtttggttaggctattggctacccccgtc Alignment from Exonerate_protein2genome CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGAT-GGCTCTGATGAAGTCAACTGCAAAAACG cagaagccatttggctgccttcattccagcccctttatctgtacttccagCTTCTCAAACCTGCCGACCTGACCAATTTGAATGTGAAGATGGTACCTGTATCCACGGTAGCAGACAATGTAATGGCATCCGAGACTGTGTTGATCGGCTCTGATGAAGTAAACTGTAGAAACAgtaagtttctctttccattgtgtttggttaggctattggctacccccgtc Alignment from Exonerate_coding2genome CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGAT-GGCTCTGATGAAGTCAACTGCAAAAACG cagaagccatttggctgccttcattccagcccctttatctgtacttccagCTTCTCAAACCTGCCGACCTGACCAATTTGAATGTGAAGATGGTACCTGTATCCACGGTAGCAGACAATGTAATGGCATCCGAGACTGTGTTGATCGGCTCTGATGAAGTAAACTGTAGAAACAgtaagtttctctttccattgtgtttggttaggctattggctacccccgtc Alignment from GeneWise CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGAT-GGCTCTGATGAAGTCAACTGCAAAAACG cagaagccatttggctgccttcattccagcccctttatctgtacttccagCTTCTCAAACCTGCCGACCTGACCAATTTGAATGTGAAGATGGTACCTGTATCCACGGTAGCAGACAATGTAATGGCATCCGAGACTGTGTTGATCGGCTCTGATGAAGTAAACTGTAGAAACAgtaagtttctctttccattgtgtttggttaggctattggctacccccgtc #### Vldlr_ID5814_13 --> 2 - 0 Original Alignment acCTTGTCAAAAGCCGCCTCTACTGGCTGGAT-TCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG gcacaagcttggggagaaagtagctgaacctgatagaatctctccaccagacCTTGTCAAAAGCCGTCTCTACTGGCTGGACCTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCCCTCGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAGgtaatacttgtgattcacgtctatgtgtgcatctgtgaagcagttctaga Alignment from CESAR acCTTGTCAAAAGCCGCCTCTACTGGCTGGAT-TCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG gcacaagcttggggagaaagtagctgaacctgatagaatctctccaccagacCTTGTCAAAAGCCGTCTCTACTGGCTGGACCTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCCCTCGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAGgtaatacttgtgattcacgtctatgtgtgcatctgtgaagcagttctaga Alignment from Spaln_aa2Genome CTCGACCTTGTCAAAAGCCGCCTCTACTGGCTGGAT-TCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG caagcttggggagaaagtagctgaacctgatagaatctctccacca gACCTTGTCAAAAGCCGTCTCTACTGGCTGGACcTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCCCTCGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAGgtaatacttgtgattcacgtctatgtgtgcatctgtgaagcagttctaga Alignment from Spaln_nt2Genome ACCTTGTCAAAAGCCGCCTCTACTGGCTGGAT-TCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG gcacaagcttggggagaaagtagctgaacctgatagaatctctccaccagACCTTGTCAAAAGCCGTCTCTACTGGCTGGACCTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCCCTCGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAGgtaatacttgtgattcacgtctatgtgtgcatctgtgaagcagttctaga Alignment from Pairagon ACCTTGTCAAAAGCCGCCTCTACTGGCTGGA-TTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG gcacaagcttggggagaaagtagctgaacctgatagaatctctccaccagACCTTGTCAAAAGCCGTCTCTACTGGCTGGACCTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCCCTCGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAGgtaatacttgtgattcacgtctatgtgtgcatctgtgaagcagttctaga Alignment from Exonerate_protein2genome TCGACCTTGTCAAAAGCCGCCTCTACTGGCTGGAT-TCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG gcacaagcttggggagaaagtagctgaacctgatagaatctctccacCAGACCTTGTCAAAAGCCGTCTCTACTGGCTGGACCTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCCCTCGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAGgtaatacttgtgattcacgtctatgtgtgcatctgtgaagcagttctaga Alignment from Exonerate_coding2genome TCGACCTTGTCAAAAGCCGCCTCTACTGGCTGGAT-TCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG gcacaagcttggggagaaagtagctgaacctgatagaatctctccacCAGACCTTGTCAAAAGCCGTCTCTACTGGCTGGACCTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCCCTCGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAGgtaatacttgtgattcacgtctatgtgtgcatctgtgaagcagttctaga Alignment from GeneWise TCGACCTTGTCAAAAGCCGCCTCTACTGGCTGGAT-TCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAG gcacaagcttggggagaaagtagctgaacctgatagaatctctccaccagAC---CTTGTCAAAAGCCGTCTCTACTGGCTGGACCTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCCCTCGAGTTCCTAGCTCATCCTCTTGCACTCACCATATTTGAGgtaatacttgtgattcacgtctatgtgtgcatctgtgaagcagttctaga #### Vps13a_ID4093_30 --> 2 - 1 Original Alignment ctTTAAAGCTACCCACGAAT-GAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAg catttctaaaactttccttgtgttgttagaggatatttgtattgttatagctTTAAAGCTACCCACAAATCGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTCATTCAGGATCAGAAACAGAACATTTCTGAAATTAAAATTGAAggtaagtacatctcataaaatgtatttagtattgacaaattgaagaagaca Alignment from CESAR ctTTAAAGCTACCCACGAAT-GAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAg catttctaaaactttccttgtgttgttagaggatatttgtattgttatagctTTAAAGCTACCCACAAATCGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTCATTCAGGATCAGAAACAGAACATTTCTGAAATTAAAATTGAAggtaagtacatctcataaaatgtatttagtattgacaaattgaagaagaca Alignment from Spaln_aa2Genome CTTTAAAGCTACCCACGAAT-GAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG catttctaaaactttccttgtgttgttagaggatatttgtattgttatagCTTTAAAGCTACCCACAAATcGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTCATTCAGGATCAGAAACAGAACATTTCTGAAATTAAAATTGAAGgtaagtacatctcataaaatgtatttagtattgacaaattgaagaagaca Alignment from Spaln_nt2Genome CTTTAAAGCTACCCACGAAT-GAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG catttctaaaactttccttgtgttgttagaggatatttgtattgttatagCTTTAAAGCTACCCACAAATCGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTCATTCAGGATCAGAAACAGAACATTTCTGAAATTAAAATTGAAGgtaagtacatctcataaaatgtatttagtattgacaaattgaagaagaca Alignment from Pairagon CTTTAAAGCTACCCACGAAT-GAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG catttctaaaactttccttgtgttgttagaggatatttgtattgttatagCTTTAAAGCTACCCACAAATCGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTCATTCAGGATCAGAAACAGAACATTTCTGAAATTAAAATTGAAGgtaagtacatctcataaaatgtatttagtattgacaaattgaagaagaca Alignment from Exonerate_protein2genome CTTTAAAGCTACCCACGAAT-GAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG catttctaaaactttccttgtgttgttagaggatatttgtattgttatagCTTTAAAGCTACCCACAAATCGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTCATTCAGGATCAGAAACAGAACATTTCTGAAATTAAAATTGAAGgtaagtacatctcataaaatgtatttagtattgacaaattgaagaagaca Alignment from Exonerate_coding2genome CTTTAAAGCTACCCACGAAT-GAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG catttctaaaactttccttgtgttgttagaggatatttgtattgttatagCTTTAAAGCTACCCACAAATCGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTCATTCAGGATCAGAAACAGAACATTTCTGAAATTAAAATTGAAGgtaagtacatctcataaaatgtatttagtattgacaaattgaagaagaca Alignment from GeneWise AAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG catttctaaaactttccttgtgttgttagaggatatttgtattgttatagctttaaagC---TACCCACAAATCGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTCATTCAGGATCAGAAACAGAACATTTCTGAAATTAAAATTGAAGgtaagtacatctcataaaatgtatttagtattgacaaattgaagaagaca #### Vwce_ID2964_18 --> 2 - 0 Original Alignment acTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACC-CGGTGCATCTGCCAG aattcgcccagctgaacctgggtcccatccctctgggctcctggcggcagacTGTAACTTTGAAGGGAGAAAGGTAGTGAATGGTCAGGTTTTCACCTTGGATGATGAGCCCTGTACCCCGGTGCATCTGCCAGgtcagttggccggagggcctggggctacctgttgcacaagggactttcat Alignment from CESAR acTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACC-CGGTGCATCTGCCAG aattcgcccagctgaacctgggtcccatccctctgggctcctggcggcagacTGTAACTTTGAAGGGAGAAAGGTAGTGAATGGTCAGGTTTTCACCTTGGATGATGAGCCCTGTACCCCGGTGCATCTGCCAGgtcagttggccggagggcctggggctacctgttgcacaagggactttcat Alignment from Spaln_aa2Genome ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACC-CGGTGCATCTGCCAG aattcgcccagctgaacctgggtcccatccctctgggctcctggcggcagACTGTAACTTTGAAGGGAGAAAGGTAGTGAATGGTCAGGTTTTCACCTTGGATGATGAGCCCTGTACCcCGGTGCATCTGCCAGgtcagttggccggagggcctggggctacctgttgcacaagggactttcat Alignment from Spaln_nt2Genome ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCC-GGTGCATCTGCCAG aattcgcccagctgaacctgggtcccatccctctgggctcctggcggcagACTGTAACTTTGAAGGGAGAAAGGTAGTGAATGGTCAGGTTTTCACCTTGGATGATGAGCCCTGTACCCCGGTGCATCTGCCAGgtcagttggccggagggcctggggctacctgttgcacaagggactttcat Alignment from Pairagon ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTA-CCCGGTGCATCTGCCAG aattcgcccagctgaacctgggtcccatccctctgggctcctggcggcagACTGTAACTTTGAAGGGAGAAAGGTAGTGAATGGTCAGGTTTTCACCTTGGATGATGAGCCCTGTACCCCGGTGCATCTGCCAGgtcagttggccggagggcctggggctacctgttgcacaagggactttcat Alignment from Exonerate_protein2genome ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACC-CGGTGCATCTGCCAG aattcgcccagctgaacctgggtcccatccctctgggctcctggcggcagACTGTAACTTTGAAGGGAGAAAGGTAGTGAATGGTCAGGTTTTCACCTTGGATGATGAGCCCTGTACCCCGGTGCATCTGCCAGgtcagttggccggagggcctggggctacctgttgcacaagggactttcat Alignment from Exonerate_coding2genome ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACC-CGGTGCATCTGCCAG aattcgcccagctgaacctgggtcccatccctctgggctcctggcggcagACTGTAACTTTGAAGGGAGAAAGGTAGTGAATGGTCAGGTTTTCACCTTGGATGATGAGCCCTGTACCCCGGTGCATCTGCCAGgtcagttggccggagggcctggggctacctgttgcacaagggactttcat Alignment from GeneWise ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGT-ACCCGGTGCATCTGCCAG aattcgcccagctgaacctgggtcccatccctctgggctcctggcggcagACTGTAACTTTGAAGGGAGAAAGGTAGTGAATGGTCAGGTTTTCACCTTGGATGATGAGCCCTGTACCCCGGTGCATCTGCCAGgtcagttggccggagggcctggggctacctgttgcacaagggactttcat #### Wdr74_ID2315_5 --> 0 - 0 Original Alignment CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAG-GAGCCTGTATTCAGGGCCAAAAAT aaaggaaagattaagggctttgagactaagtgcttttgtcctttctccagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGTGTAGGATGCGCCAGGATCCCACACATACACATGTCGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGCGAGCCTGTTTTCAGGGCCAAAAATgtgagcgagggataaaggattggggagataccatgtttaaaggttgggga Alignment from CESAR CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAG-GAGCCTGTATTCAGGGCCAAAAAT aaaggaaagattaagggctttgagactaagtgcttttgtcctttctccagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGTGTAGGATGCGCCAGGATCCCACACATACACATGTCGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGCGAGCCTGTTTTCAGGGCCAAAAATgtgagcgagggataaaggattggggagataccatgtttaaaggttgggga Alignment from Spaln_aa2Genome CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAG-GAGCCTGTATTCAGGGCCAAAAAT aaaggaaagattaagggctttgagactaagtgcttttgtcctttctccagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGTGTAGGATGCGCCAGGATCCCACACATACACATGTCGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGcGAGCCTGTTTTCAGGGCCAAAAATgtgagcgagggataaaggattggggagataccatgtttaaaggttgggga Alignment from Spaln_nt2Genome CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAG-GAGCCTGTATTCAGGGCCAAAAAT aaaggaaagattaagggctttgagactaagtgcttttgtcctttctccagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGTGTAGGATGCGCCAGGATCCCACACATACACATGTCGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGCGAGCCTGTTTTCAGGGCCAAAAATgtgagcgagggataaaggattggggagataccatgtttaaaggttgggga Alignment from Pairagon CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAG-GAGCCTGTATTCAGGGCCAAAAAT aaaggaaagattaagggctttgagactaagtgcttttgtcctttctccagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGTGTAGGATGCGCCAGGATCCCACACATACACATGTCGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGCGAGCCTGTTTTCAGGGCCAAAAATgtgagcgagggataaaggattggggagataccatgtttaaaggttgggga Alignment from Exonerate_protein2genome CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAG-GAGCCTGTATTCAGGGCCAAAAAT aaaggaaagattaagggctttgagactaagtgcttttgtcctttctccagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGTGTAGGATGCGCCAGGATCCCACACATACACATGTCGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGCGAGCCTGTTTTCAGGGCCAAAAATgtgagcgagggataaaggattggggagataccatgtttaaaggttgggga Alignment from Exonerate_coding2genome CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAG-GAGCCTGTATTCAGGGCCAAAAAT aaaggaaagattaagggctttgagactaagtgcttttgtcctttctccagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGTGTAGGATGCGCCAGGATCCCACACATACACATGTCGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGCGAGCCTGTTTTCAGGGCCAAAAATgtgagcgagggataaaggattggggagataccatgtttaaaggttgggga Alignment from GeneWise CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAG-GAGCCTGTATTCAGGGCCAAAAAT aaaggaaagattaagggctttgagactaagtgcttttgtcctttctccagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGTGTAGGATGCGCCAGGATCCCACACATACACATGTCGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGCGAGCCTGTTTTCAGGGCCAAAAATgtgagcgagggataaaggattggggagataccatgtttaaaggttgggga #### Wdr74_ID2320_10 --> 0 - 0 Original Alignment GTTTATCTCAAGTCTCAACTGAACTGCCTTCTC-CTGTCAGGCCGGGATAACTGGGAG aagtatctggctcagattatatggactcatttattcctctctacccctagGTTTATCTCAAGTCTCAGCTGAACTGCCTTCTCCCTGTCAGGCCGGGATAACTGGGAGgtacccaaatagttaggtgtgagagatttggagccaaaggcaggatgaat Alignment from CESAR GTTTATCTCAAGTCTCAACTGAACTGCCTTCTC-CTGTCAGGCCGGGATAACTGGGAG aagtatctggctcagattatatggactcatttattcctctctacccctagGTTTATCTCAAGTCTCAGCTGAACTGCCTTCTCCCTGTCAGGCCGGGATAACTGGGAGgtacccaaatagttaggtgtgagagatttggagccaaaggcaggatgaat Alignment from Spaln_aa2Genome GTTTATCTCAAGTCTCAACTGAACTGCCTTCTC-CTGTCAGGCCGGGATAACTGGGAG aagtatctggctcagattatatggactcatttattcctctctacccctagGTTTATCTCAAGTCTCAGCTGAACTGCCTTCTCcCTGTCAGGCCGGGATAACTGGGAGgtacccaaatagttaggtgtgagagatttggagccaaaggcaggatgaat Alignment from Spaln_nt2Genome GTTTATCTCAAGTCTCAACTGAACTGCCTTCTC-CTGTCAGGCCGGGATAACTGGGAG aagtatctggctcagattatatggactcatttattcctctctacccctagGTTTATCTCAAGTCTCAGCTGAACTGCCTTCTCCCTGTCAGGCCGGGATAACTGGGAGgtacccaaatagttaggtgtgagagatttggagccaaaggcaggatgaat Alignment from Pairagon GTTTATCTCAAGTCTCAACTGAACTGCCTTCT-CCTGTCAGGCCGGGATAACTGGGAG aagtatctggctcagattatatggactcatttattcctctctacccctagGTTTATCTCAAGTCTCAGCTGAACTGCCTTCTCCCTGTCAGGCCGGGATAACTGGGAGgtacccaaatagttaggtgtgagagatttggagccaaaggcaggatgaat Alignment from Exonerate_protein2genome GTTTATCTCAAGTCTCAACTGAACTGCCTTCTC-CTGTCAGGCCGGGATAACTGGGAG aagtatctggctcagattatatggactcatttattcctctctacccctagGTTTATCTCAAGTCTCAGCTGAACTGCCTTCTCCCTGTCAGGCCGGGATAACTGGGAGgtacccaaatagttaggtgtgagagatttggagccaaaggcaggatgaat Alignment from Exonerate_coding2genome GTTTATCTCAAGTCTCAACTGAACTGCCTTCTC-CTGTCAGGCCGGGATAACTGGGAG aagtatctggctcagattatatggactcatttattcctctctacccctagGTTTATCTCAAGTCTCAGCTGAACTGCCTTCTCCCTGTCAGGCCGGGATAACTGGGAGgtacccaaatagttaggtgtgagagatttggagccaaaggcaggatgaat Alignment from GeneWise GTTTATCTCAAGTCTCAACTGAACTGCCTTCTC-CTGTCAGGCCGGGATAACTGGGAG aagtatctggctcagattatatggactcatttattcctctctacccctagGTTTATCTCAAGTCTCAGCTGAACTGCCTTCTCCCTGTCAGGCCGGGATAACTGGGAGgtacccaaatagttaggtgtgagagatttggagccaaaggcaggatgaat #### Yif1a_ID830_2 --> 2 - 0 Original Alignment gtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAAC-AACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG gttcttactctgcaattatgtaatctacgtcccctgtgtcctccctaaaggtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGTGGATACCCAGCCCCGGGAGCTGATGTAGCCTTCAGTGTCAACCAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtaagtcctgggcccccaggaggagggaggcagggtttgtggccaggatt Alignment from CESAR gtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAAC-AACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG gttcttactctgcaattatgtaatctacgtcccctgtgtcctccctaaaggtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGTGGATACCCAGCCCCGGGAGCTGATGTAGCCTTCAGTGTCAACCAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtaagtcctgggcccccaggaggagggaggcagggtttgtggccaggatt Alignment from Spaln_aa2Genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAAC-AACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG gttcttactctgcaattatgtaatctacgtcccctgtgtcctccctaaagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGTGGATACCCAGCCCCGGGAGCTGATGTAGCCTTCAGTGTCAACcAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtaagtcctgggcccccaggaggagggaggcagggtttgtggccaggatt Alignment from Spaln_nt2Genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAA-CAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG gttcttactctgcaattatgtaatctacgtcccctgtgtcctccctaaagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGTGGATACCCAGCCCCGGGAGCTGATGTAGCCTTCAGTGTCAACCAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtaagtcctgggcccccaggaggagggaggcagggtttgtggccaggatt Alignment from Pairagon GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAA-CAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG gttcttactctgcaattatgtaatctacgtcccctgtgtcctccctaaagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGTGGATACCCAGCCCCGGGAGCTGATGTAGCCTTCAGTGTCAACCAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtaagtcctgggcccccaggaggagggaggcagggtttgtggccaggatt Alignment from Exonerate_protein2genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAAC-AACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG gttcttactctgcaattatgtaatctacgtcccctgtgtcctccctaaagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGTGGATACCCAGCCCCGGGAGCTGATGTAGCCTTCAGTGTCAACCAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtaagtcctgggcccccaggaggagggaggcagggtttgtggccaggatt Alignment from Exonerate_coding2genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAAC-AACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG gttcttactctgcaattatgtaatctacgtcccctgtgtcctccctaaagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGTGGATACCCAGCCCCGGGAGCTGATGTAGCCTTCAGTGTCAACCAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtaagtcctgggcccccaggaggagggaggcagggtttgtggccaggatt Alignment from GeneWise GCTTACCATTCGGCATATGGAGTCCACGGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAAC-AACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG gttcttactctgcaattatgtaATCTACGTCCCCTGTGTCCTCCCTAAAGGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGTGGATACCCAGCCCCGGGAGCTGATGTAGCCTTCAGTGTCAACCAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtaagtcctgggcccccaggaggagggaggcagggtttgtggccaggatt #### Yif1a_ID831_3 --> 0 - 0 Original Alignment CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTAT-TTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG caatcttacaggaaggaccgctatccatcttttgcacttctgtgatgcagTTGCACCGTTTTGTGTCTGTGAACAAACTCAAGTATCTTCTTTGCTGTGGACACAGCCTACGTTGCTAAGAAGCTAGGGCTATTAGTCTTCCCATACACACATCAAgtaaggttcccatccagagcgctggccagcctctccctacttgcggatga Alignment from CESAR CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTAT-TTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG caatcttacaggaaggaccgctatccatcttttgcacttctgtgatgcagTTGCACCGTTTTGTGTCTGTGAACAAACTCAAGTATCTTCTTTGCTGTGGACACAGCCTACGTTGCTAAGAAGCTAGGGCTATTAGTCTTCCCATACACACATCAAgtaaggttcccatccagagcgctggccagcctctccctacttgcggatga Alignment from Spaln_aa2Genome CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTAT-TTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG caatcttacaggaaggaccgctatccatcttttgcacttctgtgatgcagTTGCACCGTTTTGTGTCTGTGAACAAACTCAAGTATcTTCTTTGCTGTGGACACAGCCTACGTTGCTAAGAAGCTAGGGCTATTAGTCTTCCCATACACACATCAAgtaaggttcccatccagagcgctggccagcctctccctacttgcggatga Alignment from Spaln_nt2Genome CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTAT-TTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG caatcttacaggaaggaccgctatccatcttttgcacttctgtgatgcagTTGCACCGTTTTGTGTCTGTGAACAAACTCAAGTATCTTCTTTGCTGTGGACACAGCCTACGTTGCTAAGAAGCTAGGGCTATTAGTCTTCCCATACACACATCAAgtaaggttcccatccagagcgctggccagcctctccctacttgcggatga Alignment from Pairagon CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTAT-TTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG caatcttacaggaaggaccgctatccatcttttgcacttctgtgatgcagTTGCACCGTTTTGTGTCTGTGAACAAACTCAAGTATCTTCTTTGCTGTGGACACAGCCTACGTTGCTAAGAAGCTAGGGCTATTAGTCTTCCCATACACACATCAAgtaaggttcccatccagagcgctggccagcctctccctacttgcggatga Alignment from Exonerate_protein2genome CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTAT-TTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG caatcttacaggaaggaccgctatccatcttttgcacttctgtgatgcagTTGCACCGTTTTGTGTCTGTGAACAAACTCAAGTATCTTCTTTGCTGTGGACACAGCCTACGTTGCTAAGAAGCTAGGGCTATTAGTCTTCCCATACACACATCAAgtaaggttcccatccagagcgctggccagcctctccctacttgcggatga Alignment from Exonerate_coding2genome CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTAT-TTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG caatcttacaggaaggaccgctatccatcttttgcacttctgtgatgcagTTGCACCGTTTTGTGTCTGTGAACAAACTCAAGTATCTTCTTTGCTGTGGACACAGCCTACGTTGCTAAGAAGCTAGGGCTATTAGTCTTCCCATACACACATCAAgtaaggttcccatccagagcgctggccagcctctccctacttgcggatga Alignment from GeneWise CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTAT-TTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG caatcttacaggaaggaccgctatccatcttttgcacttctgtgatgcagTTGCACCGTTTTGTGTCTGTGAACAAACTCAAGTATCTTCTTTGCTGTGGACACAGCCTACGTTGCTAAGAAGCTAGGGCTATTAGTCTTCCCATACACACATCAAgtaaggttcccatccagagcgctggccagcctctccctacttgcggatga #### Yif1a_ID834_6 --> 1 - 2 Original Alignment gTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCT-TACAGCGGTTACAAATATGTGgg agctgacccaccttgggcctaccctgacttttcatctgttacatattaaggTTTTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTATGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACTGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTCTACAGCAGTTACAAATATGTGgggtgagggcctgaaggccgagaggagcctgaagggtcttaggctacaggtt Alignment from CESAR gTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCT-TACAGCGGTTACAAATATGTGgg agctgacccaccttgggcctaccctgacttttcatctgttacatattaaggTTTTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTATGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACTGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTCTACAGCAGTTACAAATATGTGgggtgagggcctgaaggccgagaggagcctgaagggtcttaggctacaggtt Alignment from Spaln_aa2Genome GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCT-TACAGCGGTTACAAATATGTGGG agctgacccaccttgggcctaccctgacttttcatctgttacatattaagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTATGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACTGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTcTACAGCAGTTACAAATATGTGGGgtgagggcctgaaggccgagaggagcctgaagggtcttaggctacaggtt Alignment from Spaln_nt2Genome GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCT-TACAGCGGTTACAAATATGTGGG agctgacccaccttgggcctaccctgacttttcatctgttacatattaagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTATGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACTGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTCTACAGCAGTTACAAATATGTGGGgtgagggcctgaaggccgagaggagcctgaagggtcttaggctacaggtt Alignment from Pairagon GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCT-TACAGCGGTTACAAATATGTGGG agctgacccaccttgggcctaccctgacttttcatctgttacatattaagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTATGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACTGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTCTACAGCAGTTACAAATATGTGGGgtgagggcctgaaggccgagaggagcctgaagggtcttaggctacaggtt Alignment from Exonerate_protein2genome GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCT-TACAGCGGTTACAAATATGTGGG agctgacccaccttgggcctaccctgacttttcatctgttacatattaagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTATGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACTGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTCTACAGCAGTTACAAATATGTGGGgtgagggcctgaaggccgagaggagcctgaagggtcttaggctacaggtt Alignment from Exonerate_coding2genome GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTT-ACAGCGGTTACAAATATGTGGG agctgacccaccttgggcctaccctgacttttcatctgttacatattaaggTTTT-CCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTATGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACTGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTCTACAGCAGTTACAAATATGTGGGgtgagggcctgaaggccgagaggagcctgaagggtcttaggctacaggtt Alignment from GeneWise GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTG-GCTTACAGCGGTTACAAATATGTGGG agctgacccaccttgggcctaccctgacttttcatctgttacatattaagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTATGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACTGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTCTACAGCAGTTACAAATATGTGGGgtgagggcctgaaggccgagaggagcctgaagggtcttaggctacaggtt #### Yif1a_ID835_7 --> 1 - 0 Original Alignment gATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCA-TCTGCGCTTATGTACTTCATT ccagttcactgcatccccagttcattccctgtctcttgactctacggcaggATGATCCTTAGTGTGCTCACGGGACTGCTCTTCGGCAGTGATAGCTACTACGTGGCCCTGGCCTGGACATCACTCTGCGCTTATGTACTTCATTgtgagcgtggggcggcccctccccctctcctctgggccaatctctctcct Alignment from CESAR gATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCA-TCTGCGCTTATGTACTTCATT ccagttcactgcatccccagttcattccctgtctcttgactctacggcaggATGATCCTTAGTGTGCTCACGGGACTGCTCTTCGGCAGTGATAGCTACTACGTGGCCCTGGCCTGGACATCACTCTGCGCTTATGTACTTCATTgtgagcgtggggcggcccctccccctctcctctgggccaattttccaatt Alignment from Spaln_aa2Genome GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCA-TCTGCGCTTATGTACTTCATT ccagttcactgcatccccagttcattccctgtctcttgactctacggcagGATGATCCTTAGTGTGCTCACGGGACTGCTCTTCGGCAGTGATAGCTACTACGTGGCCCTGGCCTGGACATCAcTCTGCGCTTATGTACTTCATTgtgagcgtggggcggcccctccccctctcctctgggccaatctctctcct Alignment from Spaln_nt2Genome GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCA-TCTGCGCTTATGTACTTCATT ccagttcactgcatccccagttcattccctgtctcttgactctacggcagGATGATCCTTAGTGTGCTCACGGGACTGCTCTTCGGCAGTGATAGCTACTACGTGGCCCTGGCCTGGACATCACTCTGCGCTTATGTACTTCATTgtgagcgtggggcggcccctccccctctcctctgggccaatctctctcct Alignment from Pairagon GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCA-TCTGCGCTTATGTACTTCATT ccagttcactgcatccccagttcattccctgtctcttgactctacggcagGATGATCCTTAGTGTGCTCACGGGACTGCTCTTCGGCAGTGATAGCTACTACGTGGCCCTGGCCTGGACATCACTCTGCGCTTATGTACTTCATTgtgagcgtggggcggcccctccccctctcctctgggccaatctctctcct Alignment from Exonerate_protein2genome GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCA-TCTGCGCTTATGTACTTCATT ccagttcactgcatccccagttcattccctgtctcttgactctacggcagGATGATCCTTAGTGTGCTCACGGGACTGCTCTTCGGCAGTGATAGCTACTACGTGGCCCTGGCCTGGACATCACTCTGCGCTTATGTACTTCATTgtgagcgtggggcggcccctccccctctcctctgggccaatctctctcct Alignment from Exonerate_coding2genome GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCAT-CTGCGCTTATGTACTTCATT ccagttcactgcatccccagttcattccctgtctcttgactctacggcagGATGATCCTTAGTGTGCTCACGGGACTGCTCTTCGGCAGTGATAGCTACTACGTGGCCCTGGCCTGGACATCACTCTGCGCTTATGTACTTCATTgtgagcgtggggcggcccctccccctctcctctgggccaatctctctcct Alignment from GeneWise GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCA-TCTGCGCTTATGTACTTCATT ccagttcactgcatccccagttcattccctgtctcttgactctacggcagGATGATCCTTAGTGTGCTCACGGGACTGCTCTTCGGCAGTGATAGCTACTACGTGGCCCTGGCCTGGACATCACTCTGCGCTTATGTACTTCATTgtgagcgtggggcggcccctccccctctcctctgggccaatctctctcct #### Zdhhc16_ID8345_2 --> 0 - 0 Original Alignment GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAG-GCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtattgctccctagtggcctttccttctcccatccatttcttttagGTGTTTGTGGTGCTGGTGATTGTGCTGACCGGTTCCATCGTAGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATTGTCTTCCATTACTACCAGCGCCATCACCACTCCTCATGGATACCCACCCCAGgtaactctccacagggcatggggagggacaaatctggctgctgtgctagc Alignment from CESAR GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAG-GCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtattgctccctagtggcctttccttctcccatccatttcttttagGTGTTTGTGGTGCTGGTGATTGTGCTGACCGGTTCCATCGTAGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATTGTCTTCCATTACTACCAGCGCCATCACCACTCCTCATGGATACCCACCCCAGgtaactctccacagggcatggggagggacaaatctggctgctgtgctagc Alignment from Spaln_aa2Genome GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAG-GCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtattgctccctagtggcctttccttctcccatccatttcttttagGTGTTTGTGGTGCTGGTGATTGTGCTGACCGGTTCCATCGTAGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATTGTCTTCCATTACTACCAGcGCCATCACCACTCCTCATGGATACCCACCCCAGgtaactctccacagggcatggggagggacaaatctggctgctgtgctagc Alignment from Spaln_nt2Genome GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAG-GCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtattgctccctagtggcctttccttctcccatccatttcttttagGTGTTTGTGGTGCTGGTGATTGTGCTGACCGGTTCCATCGTAGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATTGTCTTCCATTACTACCAGCGCCATCACCACTCCTCATGGATACCCACCCCAGgtaactctccacagggcatggggagggacaaatctggctgctgtgctagc Alignment from Pairagon GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAG-GCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtattgctccctagtggcctttccttctcccatccatttcttttagGTGTTTGTGGTGCTGGTGATTGTGCTGACCGGTTCCATCGTAGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATTGTCTTCCATTACTACCAGCGCCATCACCACTCCTCATGGATACCCACCCCAGgtaactctccacagggcatggggagggacaaatctggctgctgtgctagc Alignment from Exonerate_protein2genome GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAG-GCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtattgctccctagtggcctttccttctcccatccatttcttttagGTGTTTGTGGTGCTGGTGATTGTGCTGACCGGTTCCATCGTAGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATTGTCTTCCATTACTACCAGCGCCATCACCACTCCTCATGGATACCCACCCCAGgtaactctccacagggcatggggagggacaaatctggctgctgtgctagc Alignment from Exonerate_coding2genome GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAG-GCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtattgctccctagtggcctttccttctcccatccatttcttttagGTGTTTGTGGTGCTGGTGATTGTGCTGACCGGTTCCATCGTAGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATTGTCTTCCATTACTACCAGCGCCATCACCACTCCTCATGGATACCCACCCCAGgtaactctccacagggcatggggagggacaaatctggctgctgtgctagc Alignment from GeneWise GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAG-GCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtattgctccctagtggcctttccttctcccatccatttcttttagGTGTTTGTGGTGCTGGTGATTGTGCTGACCGGTTCCATCGTAGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTCTATAGTCACTGGAATCTGATCCTCATTGTCTTCCATTACTACCAGCGCCATCACCACTCCTCATGGATACCCACCCCAGgtaactctccacagggcatggggagggacaaatctggctgctgtgctagc #### Zdhhc16_ID8346_3 --> 0 - 2 Original Alignment GGCAGGAATGACATTGCT-ACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATag gacatcttctactatcattgtggtcaaactgtctcgtatgtcttcattagGGCAGGAATGACATTACCCACTGTGTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAACaggtatgtctcagctttgctctgtccctcatttgagggcaaaccgaccttgg Alignment from CESAR GGCAGGAATGACATTGCT-ACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATag gacatcttctactatcattgtggtcaaactgtctcgtatgtcttcattagGGCAGGAATGACATTACCCACTGTGTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAACaggtatgtctcagctttgctctgtccctcatttgagggcaaaccgaccttgg Alignment from Spaln_aa2Genome GGCAGGAATGACATTGCT-ACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG gacatcttctactatcattgtggtcaaactgtctcgtatgtcttcattagGGCAGGAATGACATTACCcACTGTGTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAACAGgtatgtctcagctttgctctgtccctcatttgagggcaaaccgaccttgg Alignment from Spaln_nt2Genome GGCAGGAATGACATTGCT-ACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG gacatcttctactatcattgtggtcaaactgtctcgtatgtcttcattagGGCAGGAATGACATTACCCACTGTGTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAACAGgtatgtctcagctttgctctgtccctcatttgagggcaaaccgaccttgg Alignment from Pairagon GGCAGGAATGACATTG-CTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG gacatcttctactatcattgtggtcaaactgtctcgtatgtcttcattagGGCAGGAATGACATTACCCACTGTGTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAACAGgtatgtctcagctttgctctgtccctcatttgagggcaaaccgaccttgg Alignment from Exonerate_protein2genome GGCAGGAATGACATTGCT-ACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG gacatcttctactatcattgtggtcaaactgtctcgtatgtcttcattagGGCAGGAATGACATTACCCACTGTGTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAACAGgtatgtctcagctttgctctgtccctcatttgagggcaaaccgaccttgg Alignment from Exonerate_coding2genome GGCAGGAATGACATTGCT-ACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG gacatcttctactatcattgtggtcaaactgtctcgtatgtcttcattagGGCAGGAATGACATTACCCACTGTGTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAACAGgtatgtctcagctttgctctgtccctcatttgagggcaaaccgaccttgg Alignment from GeneWise GGCAGGAATGACATT-GCTACTGTCTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAATAG gacatcttctactatcattgtggtcaaactgtctcgtatgtcttcattagGGCAGGAATGACATTACCCACTGTGTCCATCTGTAAGAAGTGCATTTATCCCAAGCCAGCCCGAACACACCACTGCAGCATCTGTAACAGgtatgtctcagctttgctctgtccctcatttgagggcaaaccgaccttgg #### Zdhhc16_ID8347_4 --> 1 - 1 Original Alignment gTGTGTGCTGAAGATG-GATCATCACTGCc atcccaagatccttggccgccctagcagaaaaaattctttgactttataggTGTGTGCTGAAGATGCGATCATCACTGCcgtaaaattttgttcccttcagccacgaccttttgttttacccttagagaa Alignment from CESAR gTGTGTGCTGAAGATG-GATCATCACTGCc atcccaagatccttggccgccctagcagaaaaaattctttgactttataggTGTGTGCTGAAGATGCGATCATCACTGCcgtaaaattttgttcccttcagccacgaccttttgttttacccttagagaa Alignment from Spaln_aa2Genome GTGTGTGCTGAAGATG-GATCATCACTGCC atcccaagatccttggccgccctagcagaaaaaattctttgactttatagGTGTGTGCTGAAGATGcGATCATCACTGCCgtaaaattttgttcccttcagccacgaccttttgttttacccttagagaa Alignment from Spaln_nt2Genome GTGTGTGCTGAAGATG-GATCATCACTGCC atcccaagatccttggccgccctagcagaaaaaattctttgactttatagGTGTGTGCTGAAGATGCGATCATCACTGCCgtaaaattttgttcccttcagccacgaccttttgttttacccttagagaa Alignment from Pairagon GTGTGTGCTGAAGATG-GATCATCACTGCC atcccaagatccttggccgccctagcagaaaaaattctttgactttatagGTGTGTGCTGAAGATGCGATCATCACTGCCgtaaaattttgttcccttcagccacgaccttttgttttacccttagagaa Alignment from Exonerate_protein2genome GTGTGTGCTGAAGATG-GATCATCACTGCC atcccaagatccttggccgccctagcagaaaaaattctttgactttatagGTGTGTGCTGAAGATGCGATCATCACTGCCgtaaaattttgttcccttcagccacgaccttttgttttacccttagagaa Alignment from Exonerate_coding2genome atcccaagatccttggccgccctagcagaaaaaattctttgactttataggtgtgtgctgaagatgcgatcatcactgccgtaaaattttgttcccttcagccacgaccttttgttttacccttagagaa Alignment from GeneWise atcccaagatccttggccgccctagcagaaaaaattctttgactttataggtgtgtgctgaagatgcgatcatcactgccgtaaaattttgttcccttcagccacgaccttttgttttacccttagagaa #### Zdhhc16_ID8350_7 --> 1 - 0 Original Alignment tTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTT-CTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG gattgactcctgtcttccagcttctaagtgtttatcgttttctcccacagtTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCCTCATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtaagcggagaagggactgggtgaacaagtggggaagtgattatatgtct Alignment from CESAR tTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTT-CTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG gattgactcctgtcttccagcttctaagtgtttatcgttttctcccacagtTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCCTCATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtaagcggagaagggactgggtgaacaagtggggaagtgattatatgtct Alignment from Spaln_aa2Genome TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTT-CTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG gattgactcctgtcttccagcttctaagtgtttatcgttttctcccacagTTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTcCTCATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtaagcggagaagggactgggtgaacaagtggggaagtgattatatgtct Alignment from Spaln_nt2Genome TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTT-CTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG gattgactcctgtcttccagcttctaagtgtttatcgttttctcccacagTTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCCTCATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtaagcggagaagggactgggtgaacaagtggggaagtgattatatgtct Alignment from Pairagon TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTT-CTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG gattgactcctgtcttccagcttctaagtgtttatcgttttctcccacagTTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCCTCATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtaagcggagaagggactgggtgaacaagtggggaagtgattatatgtct Alignment from Exonerate_protein2genome TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTT-CTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG gattgactcctgtcttccagcttctaagtgtttatcgttttctcccacagTTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCCTCATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtaagcggagaagggactgggtgaacaagtggggaagtgattatatgtct Alignment from Exonerate_coding2genome TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTT-CTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG gattgactcctgtcttccagcttctaagtgtttatcgttttctcccacagTTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCCTCATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtaagcggagaagggactgggtgaacaagtggggaagtgattatatgtct Alignment from GeneWise TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCT-GTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG gattgactcctgtcttccagcttctaagtgtttatcgttttctcccacagTTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCCTCATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGGgtaagcggagaagggactgggtgaacaagtggggaagtgattatatgtct #### Zfand5_ID4879_2 --> 2 - 2 Original Alignment ggACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCT-GCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAag ttttctgtaagtaagaaacaaatgagcaccatctctttaaatcccaccagggACAGCTAGTGGTTCCAACAGTCCCACCTCGGATGCTCGCATCGGTACAGAAAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAaggtagaagtgaatgtttctgagtttctctagaccaagctgtctttgctata Alignment from CESAR ggACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCT-GCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAag ttttctgtaagtaagaaacaaatgagcaccatctctttaaatcccaccagggACAGCTAGTGGTTCCAACAGTCCCACCTCGGATGCTCGCATCGGTACAGAAAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAaggtagaagtgaatgtttctgagtttctctagaccaagctgtctttgctata Alignment from Spaln_aa2Genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCT-GCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctgtaagtaagaaacaaatgagcaccatctctttaaatcccaccagGGACAGCTAGTGGTTCCAACAGTCCCACCTCGGATGCTcGCATCGGTACAGAAAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAGgtagaagtgaatgtttctgagtttctctagaccaagctgtctttgctata Alignment from Spaln_nt2Genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCT-GCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctgtaagtaagaaacaaatgagcaccatctctttaaatcccaccagGGACAGCTAGTGGTTCCAACAGTCCCACCTCGGATGCTCGCATCGGTACAGAAAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAGgtagaagtgaatgtttctgagtttctctagaccaagctgtctttgctata Alignment from Pairagon GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCT-GCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctgtaagtaagaaacaaatgagcaccatctctttaaatcccaccagGGACAGCTAGTGGTTCCAACAGTCCCACCTCGGATGCTCGCATCGGTACAGAAAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAGgtagaagtgaatgtttctgagtttctctagaccaagctgtctttgctata Alignment from Exonerate_protein2genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCT-GCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctgtaagtaagaaacaaatgagcaccatctctttaaatcccaccagGGACAGCTAGTGGTTCCAACAGTCCCACCTCGGATGCTCGCATCGGTACAGAAAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAGgtagaagtgaatgtttctgagtttctctagaccaagctgtctttgctata Alignment from Exonerate_coding2genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCT-GCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctgtaagtaagaaacaaatgagcaccatctctttaaatcccaccagGGACAGCTAGTGGTTCCAACAGTCCCACCTCGGATGCTCGCATCGGTACAGAAAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAGgtagaagtgaatgtttctgagtttctctagaccaagctgtctttgctata Alignment from GeneWise GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGAT-TCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctgtaagtaagaaacaaatgagcaccatctctttaaatcccaccagGGACAGCTAGTGGTTCCAACAGTCCCACCTCGGATGCTCGCATCGGTACAGAAAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAGgtagaagtgaatgtttctgagtttctctagaccaagctgtctttgctata #### Zp1_ID3064_8 --> 2 - 2 Original Alignment atAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTT-GAGCAGCCCCAATGGCCTATTCTGTCAGATgg tcttaaagccttacagcctgtcccaggcttttttttctgttttattccagatAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTACCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAAAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACACCCACCACTAGC---TTTCGAACAGCCCCAATGGCCTATTCTGTCAGATgggtgagcgatagcagaagactgcgctgcatccagggtggggaggatttcct Alignment from CESAR atAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATgg tcttaaagccttacagcctgtcccaggcttttttttctgttttattccagatAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTACCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAAAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACACCCACCACTAGC--TTTCGAACAGCCCCAATGGCCTATTCTGTCAGATgggtgagcgatagcagaagactgcgctgcatccagggtggggaggatttcct Alignment from Spaln_aa2Genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG tcttaaagccttacagcctgtcccaggcttttttttctgttttattccagATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTACCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAAAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACACCCACCACTAGCT--TTCGAACAGCCCCAATGGCCTATTCTGTCAGATGGgtgagcgatagcagaagactgcgctgcatccagggtggggaggatttcct Alignment from Spaln_nt2Genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG tcttaaagccttacagcctgtcccaggcttttttttctgttttattccagATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTACCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAAAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACACCCACCACTAG--CTTTCGAACAGCCCCAATGGCCTATTCTGTCAGATGGgtgagcgatagcagaagactgcgctgcatccagggtggggaggatttcct Alignment from Pairagon ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG tcttaaagccttacagcctgtcccaggcttttttttctgttttattccagATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTACCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAAAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACACCCACCACTAG--CTTTCGAACAGCCCCAATGGCCTATTCTGTCAGATGGgtgagcgatagcagaagactgcgctgcatccagggtggggaggatttcct Alignment from Exonerate_protein2genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGC-CCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG tcttaaagccttacagcctgtcccaggcttttttttctgttttattccagATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTACCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAAAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACACCCACCACTAGCT---TTCGAACAGCCCCAATGGCCTATTCTGTCAGATGGgtgagcgatagcagaagactgcgctgcatccagggtggggaggatttcct Alignment from Exonerate_coding2genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGC-CCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG tcttaaagccttacagcctgtcccaggcttttttttctgttttattccagATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTACCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAAAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACACCCACCACTAGCT---TTCGAACAGCCCCAATGGCCTATTCTGTCAGATGGgtgagcgatagcagaagactgcgctgcatccagggtggggaggatttcct Alignment from GeneWise ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG tcttaaagccttacagcctgtcccaggcttttttttctgttttattccagATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTACCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAAAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACACCCACCACTAGCT--TTCGAACAGCCCCAATGGCCTATTCTGTCAGATGGgtgagcgatagcagaagactgcgctgcatccagggtggggaggatttcct #### Zp1_ID3069_3 --> 0 - 1 Original Alignment GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACA-CTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAg agtgtcaagtggccacactcagctgctcttttatgtcatctttttattagGATGGACGGTTCCACCTGAGGGTGTTCATACAAGCCGTCTTACCAAATGGCCGTGTGGATATAGCACAAGATGTCACGCCTGATCTGTCCCAAACCGGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCAT------CTCACAATGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCCACTGGATCCACTGTACCTCACTCCCAATGGGGCACACTTGAGCCCTGGGAACTGACTGAGCTGGATTCTGTAggtaagagggcctcctctgtgtatagtctgtgtcctgtgacctgcgagcta Alignment from CESAR GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACA-CTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAg agtgtcaagtggccacactcagctgctcttttatgtcatctttttattagGATGGACGGTTCCACCTGAGGGTGTTCATACAAGCCGTCTTACCAAATGGCCGTGTGGATATAGCACAAGATGTCACGCCTGATCTGTCCCAAACCGGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCAT------CTCACAATGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCCACTGGATCCACTGTACCTCACTCCCAATGGGGCACACTTGAGCCCTGGGAACTGACTGAGCTGGATTCTGTAggtaagagggcctcctctgtgtatagtctgtgtcctgtgacctgcgagcta Alignment from Spaln_aa2Genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACA-CTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG agtgtcaagtggccacactcagctgctcttttatgtcatctttttattagGATGGACGGTTCCACCTGAGGGTGTTCATACAAGCCGTCTTACCAAATGGCCGTGTGGATATAGCACAAGATGTCACGcCTGATCTGTCCCAAACCGGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCAT------CTCACAATGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCCACTGGATCCACTGTACCTCACTCCCAATGGGGCACACTTGAGCCCTGGGAACTGACTGAGCTGGATTCTGTAGgtaagagggcctcctctgtgtatagtctgtgtcctgtgacctgcgagcta Alignment from Spaln_nt2Genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACAC-TGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG agtgtcaagtggccacactcagctgctcttttatgtcatctttttattagGATGGACGGTTCCACCTGAGGGTGTTCATACAAGCCGTCTTACCAAATGGCCGTGTGGATATAGCACAAGATGTCACGCCTGATCTGTCCCAAACCGGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCA------TCTCACAATGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCCACTGGATCCACTGTACCTCACTCCCAATGGGGCACACTTGAGCCCTGGGAACTGACTGAGCTGGATTCTGTAGgtaagagggcctcctctgtgtatagtctgtgtcctgtgacctgcgagcta Alignment from Pairagon GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACA-CTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG agtgtcaagtggccacactcagctgctcttttatgtcatctttttattagGATGGACGGTTCCACCTGAGGGTGTTCATACAAGCCGTCTTACCAAATGGCCGTGTGGATATAGCACAAGATGTCACGCCTGATCTGTCCCAAACCGGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCA------TCTCACAATGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCCACTGGATCCACTGTACCTCACTCCCAATGGGGCACACTTGAGCCCTGGGAACTGACTGAGCTGGATTCTGTAGgtaagagggcctcctctgtgtatagtctgtgtcctgtgacctgcgagcta Alignment from Exonerate_protein2genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACA-CTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG agtgtcaagtggccacactcagctgctcttttatgtcatctttttattagGATGGACGGTTCCACCTGAGGGTGTTCATACAAGCCGTCTTACCAAATGGCCGTGTGGATATAGCACAAGATGTCACGCCTGATCTGTCCCAAACCGGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCAT------CTCACAATGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCCACTGGATCCACTGTACCTCACTCCCAATGGGGCACACTTGAGCCCTGGGAACTGACTGAGCTGGATTCTGTAGgtaagagggcctcctctgtgtatagtctgtgtcctgtgacctgcgagcta Alignment from Exonerate_coding2genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACA-CTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG agtgtcaagtggccacactcagctgctcttttatgtcatctttttattagGATGGACGGTTCCACCTGAGGGTGTTCATACAAGCCGTCTTACCAAATGGCCGTGTGGATATAGCACAAGATGTCACGCCTGATCTGTCCCAAACCGGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCAT------CTCACAATGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCCACTGGATCCACTGTACCTCACTCCCAATGGGGCACACTTGAGCCCTGGGAACTGACTGAGCTGGATTCTGTAGgtaagagggcctcctctgtgtatagtctgtgtcctgtgacctgcgagcta Alignment from GeneWise GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACA-CTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG agtgtcaagtggccacactcagctgctcttttatgtcatctttttattagGATGGACGGTTCCACCTGAGGGTGTTCATACAAGCCGTCTTACCAAATGGCCGTGTGGATATAGCACAAGATGTCACGCCTGATCTGTCCCAAACCGGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCAT------CTCACAATGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCCACTGGATCCACTGTACCTCACTCCCAATGGGGCACACTTGAGCCCTGGGAACTGACTGAGCTGGATTCTGTAGgtaagagggcctcctctgtgtatagtctgtgtcctgtgacctgcgagcta ####