#### 1700055N04Rik_ID225_3 --> 0 - 0 Original Alignment TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAG-ACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG acctgaaaagtggacccagtctaacttgtctcaccttttccctcttacagTCAGGCCTCAAATCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGCACCTGGATGAAGGATGAACCTTTGTCCACCAACTTGgtaagtcacgtcacaccacatacacagacacacatgcacacacacacacc Alignment from CESAR TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAG-ACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG acctgaaaagtggacccagtctaacttgtctcaccttttccctcttacagTCAGGCCTCAAATCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGCACCTGGATGAAGGATGAACCTTTGTCCACCAACTTGgtaagtcacgtcacaccacatacacagacacacatgcacacacacacacc Alignment from Spaln_aa2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAG-ACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG acctgaaaagtggacccagtctaacttgtctcaccttttccctcttacagTCAGGCCTCAAATCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGcACCTGGATGAAGGATGAACCTTTGTCCACCAACTTGgtaagtcacgtcacaccacatacacagacacacatgcacacacacacacc Alignment from Spaln_nt2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAG-ACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG acctgaaaagtggacccagtctaacttgtctcaccttttccctcttacagTCAGGCCTCAAATCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGCACCTGGATGAAGGATGAACCTTTGTCCACCAACTTGgtaagtcacgtcacaccacatacacagacacacatgcacacacacacacc Alignment from Pairagon TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAG-ACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG acctgaaaagtggacccagtctaacttgtctcaccttttccctcttacagTCAGGCCTCAAATCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGCACCTGGATGAAGGATGAACCTTTGTCCACCAACTTGgtaagtcacgtcacaccacatacacagacacacatgcacacacacacacc Alignment from Exonerate_protein2genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAG-ACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG acctgaaaagtggacccagtctaacttgtctcaccttttccctcttacagTCAGGCCTCAAATCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGCACCTGGATGAAGGATGAACCTTTGTCCACCAACTTGgtaagtcacgtcacaccacatacacagacacacatgcacacacacacacc Alignment from Exonerate_coding2genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAG-ACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG acctgaaaagtggacccagtctaacttgtctcaccttttccctcttacagTCAGGCCTCAAATCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGCACCTGGATGAAGGATGAACCTTTGTCCACCAACTTGgtaagtcacgtcacaccacatacacagacacacatgcacacacacacacc Alignment from GeneWise TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAG-ACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG acctgaaaagtggacccagtctaacttgtctcaccttttccctcttacagTCAGGCCTCAAATCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGCACCTGGATGAAGGATGAACCTTTGTCCACCAACTTGgtaagtcacgtcacaccacatacacagacacacatgcacacacacacacc #### 1700055N04Rik_ID227_5 --> 2 - 0 Original Alignment gaAACTGTGTGGTGCTGAAGCCA-TCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG gtgtgcaagcatcagtctcccctcaccagggatcttcctgtctctcacaggaAACTGTGTGGTGTTAAAGCCACTCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCTACCTCAGTATCTGGACCAGgttagaatcactgatctgttaagcagcctggtacacccacacccctgtgt Alignment from CESAR gaAACTGTGTGGTGCTGAAGCCA-TCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG gtgtgcaagcatcagtctcccctcaccagggatcttcctgtctctcacaggaAACTGTGTGGTGTTAAAGCCACTCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCTACCTCAGTATCTGGACCAGgttagaatcactgatctgttaagcagcctggtacacccacacccctgtgt Alignment from Spaln_aa2Genome GAAACTGTGTGGTGCTGAAGCCA-TCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG gtgtgcaagcatcagtctcccctcaccagggatcttcctgtctctcacagGAAACTGTGTGGTGTTAAAGCCAcTCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCTACCTCAGTATCTGGACCAGgttagaatcactgatctgttaagcagcctggtacacccacacccctgtgt Alignment from Spaln_nt2Genome GAAACTGTGTGGTGCTGAAGCCA-TCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG gtgtgcaagcatcagtctcccctcaccagggatcttcctgtctctcacagGAAACTGTGTGGTGTTAAAGCCACTCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCTACCTCAGTATCTGGACCAGgttagaatcactgatctgttaagcagcctggtacacccacacccctgtgt Alignment from Pairagon GAAACTGTGTGGTGCTGAAGCCA-TCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG gtgtgcaagcatcagtctcccctcaccagggatcttcctgtctctcacagGAAACTGTGTGGTGTTAAAGCCACTCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCTACCTCAGTATCTGGACCAGgttagaatcactgatctgttaagcagcctggtacacccacacccctgtgt Alignment from Exonerate_protein2genome GAAACTGTGTGGTGCTGAAGCCA-TCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG gtgtgcaagcatcagtctcccctcaccagggatcttcctgtctctcacagGAAACTGTGTGGTGTTAAAGCCACTCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCTACCTCAGTATCTGGACCAGgttagaatcactgatctgttaagcagcctggtacacccacacccctgtgt Alignment from Exonerate_coding2genome GAAACTGTGTGGTGCTGAAGCCA-TCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG gtgtgcaagcatcagtctcccctcaccagggatcttcctgtctctcacagGAAACTGTGTGGTGTTAAAGCCACTCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCTACCTCAGTATCTGGACCAGgttagaatcactgatctgttaagcagcctggtacacccacacccctgtgt Alignment from GeneWise GAAACTGTGTGGTGCTGAAGCCA-TCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG gtgtgcaagcatcagtctcccctcaccagggatcttcctgtctctcacagGAAACTGTGTGGTGTTAAAGCCACTCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCTACCTCAGTATCTGGACCAGgttagaatcactgatctgttaagcagcctggtacacccacacccctgtgt #### 1700055N04Rik_ID228_6 --> 0 - 1 Original Alignment AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACC-GGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAg aggtcgtcctgctaaagagcttgccccttccttctgcctccctcctttagAGCTGCTTTGCTGTGATGCTGGGAGGACCTGAGGAGACTCGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACGggtgagtagagccctgtcgaggacctggggtggagcgatataatagaatat Alignment from CESAR AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACC-GGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAg aggtcgtcctgctaaagagcttgccccttccttctgcctccctcctttagAGCTGCTTTGCTGTGATGCTGGGAGGACCTGAGGAGACTCGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACGggtgagtagagccctgtcgaggacctggggtggagcgatataatagaatat Alignment from Spaln_aa2Genome AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACC-GGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aggtcgtcctgctaaagagcttgccccttccttctgcctccctcctttagAGCTGCTTTGCTGTGATGCTGGGAGGACCTGAGGAGACTcGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACGGgtgagtagagccctgtcgaggacctggggtggagcgatataatagaatat Alignment from Spaln_nt2Genome AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGAC-CGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aggtcgtcctgctaaagagcttgccccttccttctgcctccctcctttagAGCTGCTTTGCTGTGATGCTGGGAGGACCTGAGGAGACTCGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACGGgtgagtagagccctgtcgaggacctggggtggagcgatataatagaatat Alignment from Pairagon AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGAC-CGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aggtcgtcctgctaaagagcttgccccttccttctgcctccctcctttagAGCTGCTTTGCTGTGATGCTGGGAGGACCTGAGGAGACTCGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACGGgtgagtagagccctgtcgaggacctggggtggagcgatataatagaatat Alignment from Exonerate_protein2genome AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACC-GGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aggtcgtcctgctaaagagcttgccccttccttctgcctccctcctttagAGCTGCTTTGCTGTGATGCTGGGAGGACCTGAGGAGACTCGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACGGgtgagtagagccctgtcgaggacctggggtggagcgatataatagaatat Alignment from Exonerate_coding2genome AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACC-GGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aggtcgtcctgctaaagagcttgccccttccttctgcctccctcctttagAGCTGCTTTGCTGTGATGCTGGGAGGACCTGAGGAGACTCGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACGGgtgagtagagccctgtcgaggacctggggtggagcgatataatagaatat Alignment from GeneWise AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAG-ACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAGGAAG aggtcgtcctgctaaagagcttgccccttccttctgcctccctcctttagAGCTGCTTTGCTGTGATGCTGGGAGGACCTGAGGAGACTCGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACGGGTGAgtagagccctgtcgaggacctggggtggagcgatataatagaatat #### 1700123I01Rik_ID1493_5 --> 2 - 0 Original Alignment ggAAACCAGCAGATGAT-ATTCCTCTTGAGTTG acaggtaaaacagtcttgcttcatcatgcacctgttgtctgaatctgtagggAAACCTGCAGATGATCATTCCTCTTGAGTTGgtgagttttgcttattctatacagagatgagaattgtctctgttacccca Alignment from CESAR ggAAACCAGCAGATGAT-ATTCCTCTTGAGTTG acaggtaaaacagtcttgcttcatcatgcacctgttgtctgaatctgtagggAAACCTGCAGATGATCATTCCTCTTGAGTTGgtgagttttgcttattctatacagagatgagaattgtctctgttacccca Alignment from Spaln_aa2Genome GGAAACCAGCAGATGAT-ATTCCTCTTGAGTTG acaggtaaaacagtcttgcttcatcatgcacctgttgtctgaatctgtagGGAAACCTGCAGATGATcATTCCTCTTGAGTTGgtgagttttgcttattctatacagagatgagaattgtctctgttacccca Alignment from Spaln_nt2Genome GGAAACCAGCAGATGAT-ATTCCTCTTGAGTTG acaggtaaaacagtcttgcttcatcatgcacctgttgtctgaatctgtagGGAAACCTGCAGATGATCATTCCTCTTGAGTTGgtgagttttgcttattctatacagagatgagaattgtctctgttacccca Alignment from Pairagon GGAAACCAGCAGATGAT-ATTCCTCTTGAGTTG acaggtaaaacagtcttgcttcatcatgcacctgttgtctgaatctgtagGGAAACCTGCAGATGATCATTCCTCTTGAGTTGgtgagttttgcttattctatacagagatgagaattgtctctgttacccca Alignment from Exonerate_protein2genome GGAAACCAGCAGATGAT-ATTCCTCTTGAGTTG acaggtaaaacagtcttgcttcatcatgcacctgttgtctgaatctgtagGGAAACCTGCAGATGATCATTCCTCTTGAGTTGgtgagttttgcttattctatacagagatgagaattgtctctgttacccca Alignment from Exonerate_coding2genome acaggtaaaacagtcttgcttcatcatgcacctgttgtctgaatctgtagggaaacctgcagatgatcattcctcttgagttggtgagttttgcttattctatacagagatgagaattgtctctgttacccca Alignment from GeneWise acaggtaaaacagtcttgcttcatcatgcacctgttgtctgaatctgtagggaaacctgcagatgatcattcctcttgagttggtgagttttgcttattctatacagagatgagaattgtctctgttacccca #### 1810009A15Rik_ID2453_2 --> 0 - 2 Original Alignment GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGC-AGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGgc aggtgggcggccaaggccttacatgcactgtctttcttgccttcccacagGAGCTAAAGAAGAAGTTGTCTAAGCGCCGCAGGGTATTAAGTCAAGGATTGGCAAAGGAAACGCCAGGTGGTTGGGGCTGTGATAGACGAAGGGTTGACTATGAAGCACCACCTCAAGAAGCGAgcgtacagacaggttggacccacttcttaccagatattcagagcctcccaga Alignment from CESAR GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGC-AGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGgc aggtgggcggccaaggccttacatgcactgtctttcttgccttcccacagGAGCTAAAGAAGAAGTTGTCTAAGCGCCGCAGGGTATTAAGTCAAGGATTGGCAAAGGAAACGCCAGGTGGTTGGGGCTGTGATAGACGAAGGGTTGACTATGAAGCACCACCTCAAGAAGCGAgcgtacagacaggttggacccacttcttaccagatattcagagcctcccaga Alignment from Spaln_aa2Genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGC-AGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC aggtgggcggccaaggccttacatgcactgtctttcttgccttcccacagGAGCTAAAGAAGAAGTTGTCTAAGCGCCGCAGGGTATTAAGTcAAGGATTGGCAAAGGAAACGCCAGGTGGTTGGGGCTGTGATAGACGAAGGGTTGACTATGAAGCACCACCTCAAGAAGCGAGCgtacagacaggttggacccacttcttaccagatattcagagcctcccaga Alignment from Spaln_nt2Genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAG-CAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC aggtgggcggccaaggccttacatgcactgtctttcttgccttcccacagGAGCTAAAGAAGAAGTTGTCTAAGCGCCGCAGGGTATTAAGTCAAGGATTGGCAAAGGAAACGCCAGGTGGTTGGGGCTGTGATAGACGAAGGGTTGACTATGAAGCACCACCTCAAGAAGCGAGCgtacagacaggttggacccacttcttaccagatattcagagcctcccaga Alignment from Pairagon GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAG-CAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC aggtgggcggccaaggccttacatgcactgtctttcttgccttcccacagGAGCTAAAGAAGAAGTTGTCTAAGCGCCGCAGGGTATTAAGTCAAGGATTGGCAAAGGAAACGCCAGGTGGTTGGGGCTGTGATAGACGAAGGGTTGACTATGAAGCACCACCTCAAGAAGCGAGCgtacagacaggttggacccacttcttaccagatattcagagcctcccaga Alignment from Exonerate_protein2genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGC-AGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC aggtgggcggccaaggccttacatgcactgtctttcttgccttcccacagGAGCTAAAGAAGAAGTTGTCTAAGCGCCGCAGGGTATTAAGTCAAGGATTGGCAAAGGAAACGCCAGGTGGTTGGGGCTGTGATAGACGAAGGGTTGACTATGAAGCACCACCTCAAGAAGCGAGCgtacagacaggttggacccacttcttaccagatattcagagcctcccaga Alignment from Exonerate_coding2genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGC-AGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC aggtgggcggccaaggccttacatgcactgtctttcttgccttcccacagGAGCTAAAGAAGAAGTTGTCTAAGCGCCGCAGGGTATTAAGTCAAGGATTGGCAAAGGAAACGCCAGGTGGTTGGGGCTGTGATAGACGAAGGGTTGACTATGAAGCACCACCTCAAGAAGCGAGCgtacagacaggttggacccacttcttaccagatattcagagcctcccaga Alignment from GeneWise GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGC-AGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC aggtgggcggccaaggccttacatgcactgtctttcttgccttcccacagGAGCTAAAGAAGAAGTTGTCTAAGCGCCGCAGGGTATTAAGTCAAGGATTGGCAAAGGAAACGCCAGGTGGTTGGGGCTGTGATAGACGAAGGGTTGACTATGAAGCACCACCTCAAGAAGCGAGCgtacagacaggttggacccacttcttaccagatattcagagcctcccaga #### 2010012O05Rik_ID10004_3 --> 0 - 2 Original Alignment AGTTTAAGGAAG-ATGGCAATAATAACAACACACCTTCAGTACca tgtgtgcataaggaagagtaccagtctgtcaatgtgtcttctttttcaagAGTTTAAGGAAGCATGGCAATAATAACAACACACCTACAGTACcagtaagaatgcttggtcaagtgggaggtggatggaggtgggagggggatgg Alignment from CESAR AGTTTAAGGAAG-ATGGCAATAATAACAACACACCTTCAGTACca tgtgtgcataaggaagagtaccagtctgtcaatgtgtcttctttttcaagAGTTTAAGGAAGCATGGCAATAATAACAACACACCTACAGTACcagtaagaatgcttggtcaagtgggaggtggatggaggtgggagggggatgg Alignment from Spaln_aa2Genome GGAAGATGGCAATAATAACAACACACCTTCAGTACCA tgtgtgcataaggaagagtaccagtctgtcaatgtgtcttctttttcaagagtttaagGAAGCATGGCAATAATAACAACACACCTACAGTACCAgtaagaatgcttggtcaagtgggaggtggatggaggtgggagggggatgg Alignment from Spaln_nt2Genome AGTTTAAGGAAG-ATGGCAATAATAACAACACACCTTCAGTACCA tgtgtgcataaggaagagtaccagtctgtcaatgtgtcttctttttcaagAGTTTAAGGAAGCATGGCAATAATAACAACACACCTACAGTACCAgtaagaatgcttggtcaagtgggaggtggatggaggtgggagggggatgg Alignment from Pairagon AGTTTAAGGAAG-ATGGCAATAATAACAACACACCTTCAGTACCA tgtgtgcataaggaagagtaccagtctgtcaatgtgtcttctttttcaagAGTTTAAGGAAGCATGGCAATAATAACAACACACCTACAGTACCAgtaagaatgcttggtcaagtgggaggtggatggaggtgggagggggatgg Alignment from Exonerate_protein2genome AGTTTAAGGAAG-ATGGCAATAATAACAACACACCTTCAGTACCAGCAAGAAGCTATTCAGAAGAA tgtgtgcataaggaagagtaccagtctgtcaatgtgtcttctttttcaagAGTTTAAGGAAGCATGGCAATAATAACAACACACCTACAGTACCAGTAAGAATGCTTGGTCAAGTGggaggtggatggaggtgggagggggatgg Alignment from Exonerate_coding2genome AGTTTAAGGAAG-ATGGCAATAATAACAACACACCTTCAGTACCAGCAAGAAGCTATTCAGAAGAA tgtgtgcataaggaagagtaccagtctgtcaatgtgtcttctttttcaagAGTTTAAGGAAGCATGGCAATAATAACAACACACCTACAGTACCAGTAAGAATGCTTGGTCAAGTGggaggtggatggaggtgggagggggatgg Alignment from GeneWise tgtgtgcataaggaagagtaccagtctgtcaatgtgtcttctttttcaagagtttaaggaagcatggcaataataacaacacacctacagtaccagtaagaatgcttggtcaagtgggaggtggatggaggtgggagggggatgg #### 9130011E15Rik_ID9675_6 --> 0 - 0 Original Alignment GTCACAGATAATATCAGC-CAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aatgatttttaccacaaataaacaaggactataaaatatttttgttgcagGTCACAGATAATATCAGCCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTTGAAGCCATTTTACAGgtaaatttgactttctaaaggcttttcctttatacatagtctatccctta Alignment from CESAR GTCACAGATAATATCAGC-CAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aatgatttttaccacaaataaacaaggactataaaatatttttgttgcagGTCACAGATAATATCAGCCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTTGAAGCCATTTTACAGgtaaatttgactttctaaaggcttttcctttatacatagtctatccctta Alignment from Spaln_aa2Genome GCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aatgatttttaccacaaataaacaaggactataaaatatttttgttgcaggtcacagataatatcagCCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTTGAAGCCATTTTACAGgtaaatttgactttctaaaggcttttcctttatacatagtctatccctta Alignment from Spaln_nt2Genome GTCACAGATAATATCAG-CCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aatgatttttaccacaaataaacaaggactataaaatatttttgttgcagGTCACAGATAATATCAGCCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTTGAAGCCATTTTACAGgtaaatttgactttctaaaggcttttcctttatacatagtctatccctta Alignment from Pairagon GTCACAGATAATATCAG-CCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aatgatttttaccacaaataaacaaggactataaaatatttttgttgcagGTCACAGATAATATCAGCCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTTGAAGCCATTTTACAGgtaaatttgactttctaaaggcttttcctttatacatagtctatccctta Alignment from Exonerate_protein2genome GTCACAGATAATATCAGC-CAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aatgatttttaccacaaataaacaaggactataaaatatttttgttgcagGTCACAGATAATATCAGCCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTTGAAGCCATTTTACAGgtaaatttgactttctaaaggcttttcctttatacatagtctatccctta Alignment from Exonerate_coding2genome GTCACAGATAATATCAGC-CAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aatgatttttaccacaaataaacaaggactataaaatatttttgttgcagGTCACAGATAATATCAGCCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTTGAAGCCATTTTACAGgtaaatttgactttctaaaggcttttcctttatacatagtctatccctta Alignment from GeneWise GCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG aatgatttttaccacaaataaacaaggactataaaatatttttgttgcaggtcacagataatatcagCCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTTGAAGCCATTTTACAGgtaaatttgactttctaaaggcttttcctttatacatagtctatccctta #### AI846148_ID2142_4 --> 2 - 1 Original Alignment ttACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGG-CATATGACCAAAATCTTGGACCCTGACCCAg aagagtgagtggcttgaaagcggctaagcatttcaatcatctccactcagttACCCCTGTCATAGAGCAAGGGAATAAGAAGCCCCGTGGCCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCCATATGACCAAAATCTTGGACCCTGACCCAggtgaggtgacttgggggtgacgtggctggactactcaagcataaagtcca Alignment from CESAR ttACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGG-CATATGACCAAAATCTTGGACCCTGACCCAg aagagtgagtggcttgaaagcggctaagcatttcaatcatctccactcagttACCCCTGTCATAGAGCAAGGGAATAAGAAGCCCCGTGGCCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCCATATGACCAAAATCTTGGACCCTGACCCAggtgaggtgacttgggggtgacgtggctggactactcaagcataaagtcca Alignment from Spaln_aa2Genome TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGG-CATATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggcttgaaagcggctaagcatttcaatcatctccactcagTTACCCCTGTCATAGAGCAAGGGAATAAGAAGCCCCGTGGCCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGcCATATGACCAAAATCTTGGACCCTGACCCAGgtgaggtgacttgggggtgacgtggctggactactcaagcataaagtcca Alignment from Spaln_nt2Genome TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGG-CATATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggcttgaaagcggctaagcatttcaatcatctccactcagTTACCCCTGTCATAGAGCAAGGGAATAAGAAGCCCCGTGGCCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCCATATGACCAAAATCTTGGACCCTGACCCAGgtgaggtgacttgggggtgacgtggctggactactcaagcataaagtcca Alignment from Pairagon TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGG-CATATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggcttgaaagcggctaagcatttcaatcatctccactcagTTACCCCTGTCATAGAGCAAGGGAATAAGAAGCCCCGTGGCCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCCATATGACCAAAATCTTGGACCCTGACCCAGgtgaggtgacttgggggtgacgtggctggactactcaagcataaagtcca Alignment from Exonerate_protein2genome TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGG-CATATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggcttgaaagcggctaagcatttcaatcatctccactcagTTACCCCTGTCATAGAGCAAGGGAATAAGAAGCCCCGTGGCCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCCATATGACCAAAATCTTGGACCCTGACCCAGgtgaggtgacttgggggtgacgtggctggactactcaagcataaagtcca Alignment from Exonerate_coding2genome TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGG-CATATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggcttgaaagcggctaagcatttcaatcatctccactcagTTACCCCTGTCATAGAGCAAGGGAATAAGAAGCCCCGTGGCCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCCATATGACCAAAATCTTGGACCCTGACCCAGgtgaggtgacttgggggtgacgtggctggactactcaagcataaagtcca Alignment from GeneWise TTACCCCTGTCATAGAGCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGC-AGGCATATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggcttgaaagcggctaagcatttcaatcatctccactcagTTACCCCTGTCATAGAGCAAGGGAATAAGAAGCCCCGTGGCCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCCATATGACCAAAATCTTGGACCCTGACCCAGgtgaggtgacttgggggtgacgtggctggactactcaagcataaagtcca #### Abcc2_ID8821_5 --> 0 - 0 Original Alignment GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCC-TATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactgcattttgtatgtttgttaaacatttgttttctgctctgcagGATAGCAAGTCTAACATGACCTATTCCTGCCTGTTCTTCATCTCCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGTGACTCAACACATgtaagactctacatccattcattgcttatgttattataactggaggatgc Alignment from CESAR GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCC-TATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactgcattttgtatgtttgttaaacatttgttttctgctctgcagGATAGCAAGTCTAACATGACCTATTCCTGCCTGTTCTTCATCTCCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGTGACTCAACACATgtaagactctacatccattcattgcttatgttattataactggaggatgc Alignment from Spaln_aa2Genome GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCC-TATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactgcattttgtatgtttgttaaacatttgttttctgctctgcagGATAGCAAGTCTAACATGACCTATTCCTGCCTGTTCTTCATCTCCcTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGTGACTCAACACATgtaagactctacatccattcattgcttatgttattataactggaggatgc Alignment from Spaln_nt2Genome GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCT-CCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactgcattttgtatgtttgttaaacatttgttttctgctctgcagGATAGCAAGTCTAACATGACCTATTCCTGCCTGTTCTTCATCTCCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGTGACTCAACACATgtaagactctacatccattcattgcttatgttattataactggaggatgc Alignment from Pairagon GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCT-CCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactgcattttgtatgtttgttaaacatttgttttctgctctgcagGATAGCAAGTCTAACATGACCTATTCCTGCCTGTTCTTCATCTCCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGTGACTCAACACATgtaagactctacatccattcattgcttatgttattataactggaggatgc Alignment from Exonerate_protein2genome GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCC-TATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactgcattttgtatgtttgttaaacatttgttttctgctctgcagGATAGCAAGTCTAACATGACCTATTCCTGCCTGTTCTTCATCTCCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGTGACTCAACACATgtaagactctacatccattcattgcttatgttattataactggaggatgc Alignment from Exonerate_coding2genome GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTCTCC-TATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactgcattttgtatgtttgttaaacatttgttttctgctctgcagGATAGCAAGTCTAACATGACCTATTCCTGCCTGTTCTTCATCTCCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGTGACTCAACACATgtaagactctacatccattcattgcttatgttattataactggaggatgc Alignment from GeneWise GATAGCAAGTCCAACATGACCTATTCCTGCCTGTTCTTCGTC-TCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGCGACTCAACACAC aagagactgcattttgtatgtttgttaaacatttgttttctgctctgcagGATAGCAAGTCTAACATGACCTATTCCTGCCTGTTCTTCATCTCCCTATGGTTTCCAGATTGTCATTTTGATCCTTTCAGCCTTTTCAGAATCAAGTGACTCAACACATgtaagactctacatccattcattgcttatgttattataactggaggatgc #### Acsl5_ID11610_15 --> 2 - 0 Original Alignment gtCATGTTGGGACTCCAGTGGCTTGC-AATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccattgcttcttgtccctttataggtCATGTTGGTACTCCAGTAGCTTGCCAATTTTGTAAAGCTCGAAGATGTGGCAGACATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtaggtgggtgttgtacagcgcataggtaatggggatggagaagcttact Alignment from CESAR gtCATGTTGGGACTCCAGTGGCTTGC-AATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccattgcttcttgtccctttataggtCATGTTGGTACTCCAGTAGCTTGCCAATTTTGTAAAGCTCGAAGATGTGGCAGACATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtaggtgggtgttgtacagcgcataggtaatggggatggagaagcttact Alignment from Spaln_aa2Genome GTCATGTTGGGACTCCAGTGGCTTGC-AATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccattgcttcttgtccctttatagGTCATGTTGGTACTCCAGTAGCTTGCcAATTTTGTAAAGCTCGAAGATGTGGCAGACATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtaggtgggtgttgtacagcgcataggtaatggggatggagaagcttact Alignment from Spaln_nt2Genome GTCATGTTGGGACTCCAGTGGCTTGC-AATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccattgcttcttgtccctttatagGTCATGTTGGTACTCCAGTAGCTTGCCAATTTTGTAAAGCTCGAAGATGTGGCAGACATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtaggtgggtgttgtacagcgcataggtaatggggatggagaagcttact Alignment from Pairagon GTCATGTTGGGACTCCAGTGGCTTG-CAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccattgcttcttgtccctttatagGTCATGTTGGTACTCCAGTAGCTTGCCAATTTTGTAAAGCTCGAAGATGTGGCAGACATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtaggtgggtgttgtacagcgcataggtaatggggatggagaagcttact Alignment from Exonerate_protein2genome GTCATGTTGGGACTCCAGTGGCTTGC-AATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccattgcttcttgtccctttatagGTCATGTTGGTACTCCAGTAGCTTGCCAATTTTGTAAAGCTCGAAGATGTGGCAGACATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtaggtgggtgttgtacagcgcataggtaatggggatggagaagcttact Alignment from Exonerate_coding2genome GTCATGTTGGGACTCCAGTGGCTTGC-AATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccattgcttcttgtccctttatagGTCATGTTGGTACTCCAGTAGCTTGCCAATTTTGTAAAGCTCGAAGATGTGGCAGACATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtaggtgggtgttgtacagcgcataggtaatggggatggagaagcttact Alignment from GeneWise GCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG aatgtgcttgctctagggttgcttagccattgcttcttgtccctttataggtcatgttggtactccagtagCTTGCCAATTTTGTAAAGCTCGAAGATGTGGCAGACATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtaggtgggtgttgtacagcgcataggtaatggggatggagaagcttact #### Actn3_ID691_19 --> 0 - 0 Original Alignment AAGCGGAATGGGATGATGGAGCCCGAC-GACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gggcttggaggcctgacctgatagatatcgactgttgttttggatcccagAAGCGGAATGGGATGATGGAGCCCGACCGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaactgtcttgtccatttcagaagcatcatcagatcccctccttctgcc Alignment from CESAR AAGCGGAATGGGATGATGGAGCCCGAC-GACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gggcttggaggcctgacctgatagatatcgactgttgttttggatcccagAAGCGGAATGGGATGATGGAGCCCGACCGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaactgtcttgtccatttcagaagcatcatcagatcccctccttctgcc Alignment from Spaln_aa2Genome AAGCGGAATGGGATGATGGAGCCCGAC-GACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gggcttggaggcctgacctgatagatatcgactgttgttttggatcccagAAGCGGAATGGGATGATGGAGCCCGACcGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaactgtcttgtccatttcagaagcatcatcagatcccctccttctgcc Alignment from Spaln_nt2Genome AAGCGGAATGGGATGATGGAGCCCGA-CGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gggcttggaggcctgacctgatagatatcgactgttgttttggatcccagAAGCGGAATGGGATGATGGAGCCCGACCGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaactgtcttgtccatttcagaagcatcatcagatcccctccttctgcc Alignment from Pairagon AAGCGGAATGGGATGATGGAGCCCGA-CGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gggcttggaggcctgacctgatagatatcgactgttgttttggatcccagAAGCGGAATGGGATGATGGAGCCCGACCGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaactgtcttgtccatttcagaagcatcatcagatcccctccttctgcc Alignment from Exonerate_protein2genome AAGCGGAATGGGATGATGGAGCCCGAC-GACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gggcttggaggcctgacctgatagatatcgactgttgttttggatcccagAAGCGGAATGGGATGATGGAGCCCGACCGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaactgtcttgtccatttcagaagcatcatcagatcccctccttctgcc Alignment from Exonerate_coding2genome AAGCGGAATGGGATGATGGAGCCCGAC-GACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gggcttggaggcctgacctgatagatatcgactgttgttttggatcccagAAGCGGAATGGGATGATGGAGCCCGACCGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaactgtcttgtccatttcagaagcatcatcagatcccctccttctgcc Alignment from GeneWise AAGCGGAATGGGATGATGGAGCCCGAC-GACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gggcttggaggcctgacctgatagatatcgactgttgttttggatcccagAAGCGGAATGGGATGATGGAGCCCGACCGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaactgtcttgtccatttcagaagcatcatcagatcccctccttctgcc #### Actn3_ID692_18 --> 0 - 0 Original Alignment CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCC-TTCAACCACTTTGACCGG ttaacccaagacttggctactccctaacagcgtttcttctcttcctgcagCACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCTATTGCCCGCACCATCAATGAAGTTGATAACCAGGTACTTACTAGAGATGCCAAGGGCTTGAGCCAGGAGCAGCTCAATGAATTCCGTGCCTCCCTTCAACCACTTTGACCGGgtaacagggggctaaattcctgtgggctgacgtacttgagggcaggtggg Alignment from CESAR CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCC-TTCAACCACTTTGACCGG ttaacccaagacttggctactccctaacagcgtttcttctcttcctgcagCACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCTATTGCCCGCACCATCAATGAAGTTGATAACCAGGTACTTACTAGAGATGCCAAGGGCTTGAGCCAGGAGCAGCTCAATGAATTCCGTGCCTCCCTTCAACCACTTTGACCGGgtaacagggggctaaattcctgtgggctgacgtacttgagggcaggtggg Alignment from Spaln_aa2Genome CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCC-TTCAACCACTTTGACCGG ttaacccaagacttggctactccctaacagcgtttcttctcttcctgcagCACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCTATTGCCCGCACCATCAATGAAGTTGATAACCAGGTACTTACTAGAGATGCCAAGGGCTTGAGCCAGGAGCAGCTCAATGAATTCCGTGCCTCCcTTCAACCACTTTGACCGGgtaacagggggctaaattcctgtgggctgacgtacttgagggcaggtggg Alignment from Spaln_nt2Genome CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTC-CTTCAACCACTTTGACCGG ttaacccaagacttggctactccctaacagcgtttcttctcttcctgcagCACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCTATTGCCCGCACCATCAATGAAGTTGATAACCAGGTACTTACTAGAGATGCCAAGGGCTTGAGCCAGGAGCAGCTCAATGAATTCCGTGCCTCCCTTCAACCACTTTGACCGGgtaacagggggctaaattcctgtgggctgacgtacttgagggcaggtggg Alignment from Pairagon CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCT-CCTTCAACCACTTTGACCGG ttaacccaagacttggctactccctaacagcgtttcttctcttcctgcagCACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCTATTGCCCGCACCATCAATGAAGTTGATAACCAGGTACTTACTAGAGATGCCAAGGGCTTGAGCCAGGAGCAGCTCAATGAATTCCGTGCCTCCCTTCAACCACTTTGACCGGgtaacagggggctaaattcctgtgggctgacgtacttgagggcaggtggg Alignment from Exonerate_protein2genome CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCC-TTCAACCACTTTGACCGG ttaacccaagacttggctactccctaacagcgtttcttctcttcctgcagCACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCTATTGCCCGCACCATCAATGAAGTTGATAACCAGGTACTTACTAGAGATGCCAAGGGCTTGAGCCAGGAGCAGCTCAATGAATTCCGTGCCTCCCTTCAACCACTTTGACCGGgtaacagggggctaaattcctgtgggctgacgtacttgagggcaggtggg Alignment from Exonerate_coding2genome CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCC-TTCAACCACTTTGACCGG ttaacccaagacttggctactccctaacagcgtttcttctcttcctgcagCACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCTATTGCCCGCACCATCAATGAAGTTGATAACCAGGTACTTACTAGAGATGCCAAGGGCTTGAGCCAGGAGCAGCTCAATGAATTCCGTGCCTCCCTTCAACCACTTTGACCGGgtaacagggggctaaattcctgtgggctgacgtacttgagggcaggtggg Alignment from GeneWise CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCC-TCCTTCAACCACTTTGACCGG ttaacccaagacttggctactccctaacagcgtttcttctcttcctgcagCACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCTATTGCCCGCACCATCAATGAAGTTGATAACCAGGTACTTACTAGAGATGCCAAGGGCTTGAGCCAGGAGCAGCTCAATGAATTCCGTGCCTCCCTTCAACCACTTTGACCGGgtaacagggggctaaattcctgtgggctgacgtacttgagggcaggtggg #### Actn3_ID695_15 --> 0 - 0 Original Alignment AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGC-ATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA gataaatgggtgtaaatgggcatactggcctttgttcttcttgcccttagAGCCTGCTAACAGCACATGAACAGTTCAAGGCAACATTGCCCGAAGCTGATCGAGAGCGAGGTGCCATCCTAGGCCATCCAAGGAGAGATTCCGAAGATTTGCCAAACATACGGGCTGCGGCCCAAGTCTGGCAACCCCTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaggtataaccagcagccctgtgtgttccctacctattctcgcacattt Alignment from CESAR AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGC-ATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA gataaatgggtgtaaatgggcatactggcctttgttcttcttgcccttagAGCCTGCTAACAGCACATGAACAGTTCAAGGCAACATTGCCCGAAGCTGATCGAGAGCGAGGTGCCATCCTAGGCCATCCAAGGAGAGATTCCGAAGATTTGCCAAACATACGGGCTGCGGCCCAAGTCTGGCAACCCCTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaggtataaccagcagccctgtgtgttccctacctattctcgcacattt Alignment from Spaln_aa2Genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGC-ATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA gataaatgggtgtaaatgggcatactggcctttgttcttcttgcccttagAGCCTGCTAACAGCACATGAACAGTTCAAGGCAACATTGCCCGAAGCTGATCGAGAGCGAGGTGCCATCCTAGGCcATCCAAGGAGAGATTCCGAAGATTTGCCAAACATACGGGCTGCGGCCCAAGTCTGGCAACCCCTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaggtataaccagcagccctgtgtgttccctacctattctcgcacattt Alignment from Spaln_nt2Genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTG-GGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA gataaatgggtgtaaatgggcatactggcctttgttcttcttgcccttagAGCCTGCTAACAGCACATGAACAGTTCAAGGCAACATTGCCCGAAGCTGATCGAGAGCGAGGTGCCATCCTAGGCCATCCAAGGAGAGATTCCGAAGATTTGCCAAACATACGGGCTGCGGCCCAAGTCTGGCAACCCCTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaggtataaccagcagccctgtgtgttccctacctattctcgcacattt Alignment from Pairagon AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGG-CATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA gataaatgggtgtaaatgggcatactggcctttgttcttcttgcccttagAGCCTGCTAACAGCACATGAACAGTTCAAGGCAACATTGCCCGAAGCTGATCGAGAGCGAGGTGCCATCCTAGGCCATCCAAGGAGAGATTCCGAAGATTTGCCAAACATACGGGCTGCGGCCCAAGTCTGGCAACCCCTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaggtataaccagcagccctgtgtgttccctacctattctcgcacattt Alignment from Exonerate_protein2genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGC-ATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA gataaatgggtgtaaatgggcatactggcctttgttcttcttgcccttagAGCCTGCTAACAGCACATGAACAGTTCAAGGCAACATTGCCCGAAGCTGATCGAGAGCGAGGTGCCATCCTAGGCCATCCAAGGAGAGATTCCGAAGATTTGCCAAACATACGGGCTGCGGCCCAAGTCTGGCAACCCCTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaggtataaccagcagccctgtgtgttccctacctattctcgcacattt Alignment from Exonerate_coding2genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGC-ATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA gataaatgggtgtaaatgggcatactggcctttgttcttcttgcccttagAGCCTGCTAACAGCACATGAACAGTTCAAGGCAACATTGCCCGAAGCTGATCGAGAGCGAGGTGCCATCCTAGGCCATCCAAGGAGAGATTCCGAAGATTTGCCAAACATACGGGCTGCGGCCCAAGTCTGGCAACCCCTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaggtataaccagcagccctgtgtgttccctacctattctcgcacattt Alignment from GeneWise AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGC-ATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA gataaatgggtgtaaatgggcatactggcctttgttcttcttgcccttagAGCCTGCTAACAGCACATGAACAGTTCAAGGCAACATTGCCCGAAGCTGATCGAGAGCGAGGTGCCATCCTAGGCCATCCAAGGAGAGATTCCGAAGATTTGCCAAACATACGGGCTGCGGCCCAAGTCTGGCAACCCCTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaggtataaccagcagccctgtgtgttccctacctattctcgcacattt #### Actn3_ID696_14 --> 0 - 0 Original Alignment AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATT-GAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aagaccagcaggctgggaagaatctgaaatcgaaccctttctccctccagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGCTTGCTCGCCGGGCAGCCTCCTTCAATAACTGGTTGGATGGGGCTATTCGAGGACCTGCACGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAGgtaagggaaggcattagggggaatctttggacgcactttatgtggtgtaa Alignment from CESAR AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATT-GAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aagaccagcaggctgggaagaatctgaaatcgaaccctttctccctccagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGCTTGCTCGCCGGGCAGCCTCCTTCAATAACTGGTTGGATGGGGCTATTCGAGGACCTGCACGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAGgtaagggaaggcattagggggaatctttggacgcactttatgtggtgtaa Alignment from Spaln_aa2Genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATT-GAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aagaccagcaggctgggaagaatctgaaatcgaaccctttctccctccagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGCTTGCTCGCCGGGCAGCCTCCTTCAATAACTGGTTGGATGGGGCTATTcGAGGACCTGCACGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAGgtaagggaaggcattagggggaatctttggacgcactttatgtggtgtaa Alignment from Spaln_nt2Genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATT-GAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aagaccagcaggctgggaagaatctgaaatcgaaccctttctccctccagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGCTTGCTCGCCGGGCAGCCTCCTTCAATAACTGGTTGGATGGGGCTATTCGAGGACCTGCACGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAGgtaagggaaggcattagggggaatctttggacgcactttatgtggtgtaa Alignment from Pairagon AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATT-GAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aagaccagcaggctgggaagaatctgaaatcgaaccctttctccctccagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGCTTGCTCGCCGGGCAGCCTCCTTCAATAACTGGTTGGATGGGGCTATTCGAGGACCTGCACGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAGgtaagggaaggcattagggggaatctttggacgcactttatgtggtgtaa Alignment from Exonerate_protein2genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATT-GAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aagaccagcaggctgggaagaatctgaaatcgaaccctttctccctccagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGCTTGCTCGCCGGGCAGCCTCCTTCAATAACTGGTTGGATGGGGCTATTCGAGGACCTGCACGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAGgtaagggaaggcattagggggaatctttggacgcactttatgtggtgtaa Alignment from Exonerate_coding2genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATT-GAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aagaccagcaggctgggaagaatctgaaatcgaaccctttctccctccagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGCTTGCTCGCCGGGCAGCCTCCTTCAATAACTGGTTGGATGGGGCTATTCGAGGACCTGCACGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAGgtaagggaaggcattagggggaatctttggacgcactttatgtggtgtaa Alignment from GeneWise AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCT-ATTGAGGACCTGCAGGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAG aagaccagcaggctgggaagaatctgaaatcgaaccctttctccctccagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGCTTGCTCGCCGGGCAGCCTCCTTCAATAACTGGTTGGATGGGGCTATTCGAGGACCTGCACGATGTGTGGCTCGTGCACTCTGTGGAGGAGACCCAGgtaagggaaggcattagggggaatctttggacgcactttatgtggtgtaa #### Actn3_ID700_10 --> 0 - 0 Original Alignment CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAG-TGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agatgggtgaggcaggtcagctcagaaccaagtgtttctttttattctagCTGTTGGAGTGGATCCGCCGGACTGTCCCATGGCTAGAGAACCGCGTGGCTGAACCTAGCATGAGTGCCATGCAGCGCAAGCTAGAGGACTTCCGAGACTATCAACACCTGCACAAGCCTCCCTGTGTACAGGAGAAGCTGCCAGCTAGAGATCAACTTCAACACACTGCAGGCGAAGTCTCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGCTAGTTTCAgtactgccagctgggcatgctgggtgttctagctttgcctatatgtcctt Alignment from CESAR CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAG-TGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agatgggtgaggcaggtcagctcagaaccaagtgtttctttttattctagCTGTTGGAGTGGATCCGCCGGACTGTCCCATGGCTAGAGAACCGCGTGGCTGAACCTAGCATGAGTGCCATGCAGCGCAAGCTAGAGGACTTCCGAGACTATCAACACCTGCACAAGCCTCCCTGTGTACAGGAGAAGCTGCCAGCTAGAGATCAACTTCAACACACTGCAGGCGAAGTCTCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGCTAGTTTCAgtactgccagctgggcatgctgggtgttctagctttgcctatatgtcctt Alignment from Spaln_aa2Genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAG-TGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agatgggtgaggcaggtcagctcagaaccaagtgtttctttttattctagCTGTTGGAGTGGATCCGCCGGACTGTCCCATGGCTAGAGAACCGCGTGGCTGAACCTAGCATGAGTGCCATGCAGCGCAAGCTAGAGGACTTCCGAGACTATCAACACCTGCACAAGCCTCCCTGTGTACAGGAGAAGcTGCCAGCTAGAGATCAACTTCAACACACTGCAGGCGAAGTCTCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGCTAGTTTCAgtactgccagctgggcatgctgggtgttctagctttgcctatatgtcctt Alignment from Spaln_nt2Genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAG-TGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agatgggtgaggcaggtcagctcagaaccaagtgtttctttttattctagCTGTTGGAGTGGATCCGCCGGACTGTCCCATGGCTAGAGAACCGCGTGGCTGAACCTAGCATGAGTGCCATGCAGCGCAAGCTAGAGGACTTCCGAGACTATCAACACCTGCACAAGCCTCCCTGTGTACAGGAGAAGCTGCCAGCTAGAGATCAACTTCAACACACTGCAGGCGAAGTCTCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGCTAGTTTCAgtactgccagctgggcatgctgggtgttctagctttgcctatatgtcctt Alignment from Pairagon CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAG-TGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agatgggtgaggcaggtcagctcagaaccaagtgtttctttttattctagCTGTTGGAGTGGATCCGCCGGACTGTCCCATGGCTAGAGAACCGCGTGGCTGAACCTAGCATGAGTGCCATGCAGCGCAAGCTAGAGGACTTCCGAGACTATCAACACCTGCACAAGCCTCCCTGTGTACAGGAGAAGCTGCCAGCTAGAGATCAACTTCAACACACTGCAGGCGAAGTCTCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGCTAGTTTCAgtactgccagctgggcatgctgggtgttctagctttgcctatatgtcctt Alignment from Exonerate_protein2genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAG-TGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agatgggtgaggcaggtcagctcagaaccaagtgtttctttttattctagCTGTTGGAGTGGATCCGCCGGACTGTCCCATGGCTAGAGAACCGCGTGGCTGAACCTAGCATGAGTGCCATGCAGCGCAAGCTAGAGGACTTCCGAGACTATCAACACCTGCACAAGCCTCCCTGTGTACAGGAGAAGCTGCCAGCTAGAGATCAACTTCAACACACTGCAGGCGAAGTCTCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGCTAGTTTCAgtactgccagctgggcatgctgggtgttctagctttgcctatatgtcctt Alignment from Exonerate_coding2genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAG-TGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agatgggtgaggcaggtcagctcagaaccaagtgtttctttttattctagCTGTTGGAGTGGATCCGCCGGACTGTCCCATGGCTAGAGAACCGCGTGGCTGAACCTAGCATGAGTGCCATGCAGCGCAAGCTAGAGGACTTCCGAGACTATCAACACCTGCACAAGCCTCCCTGTGTACAGGAGAAGCTGCCAGCTAGAGATCAACTTCAACACACTGCAGGCGAAGTCTCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGCTAGTTTCAgtactgccagctgggcatgctgggtgttctagctttgcctatatgtcctt Alignment from GeneWise CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAG-AAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agatgggtgaggcaggtcagctcagaaccaagtgtttctttttattctagCTGTTGGAGTGGATCCGCCGGACTGTCCCATGGCTAGAGAACCGCGTGGCTGAACCTAGCATGAGTGCCATGCAGCGCAAGCTAGAGGACTTCCGAGACTATCAACACCTGCACAAGCCTCCCTGTGTACAGGAGAAGCTGCCAGCTAGAGATCAACTTCAACACACTGCAGGCGAAGTCTCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGCTAGTTTCAgtactgccagctgggcatgctgggtgttctagctttgcctatatgtcctt #### Actn3_ID707_3 --> 2 - 1 Original Alignment gaGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGAC-TTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAg atgaacttccactcatgacctttgaccctgagcccgtttctcctccataggtGCGAGACTGCCTAGGCCTGACAAAGGCAAGATGTGCTTTCACAAAATCGCCAATGTCAATAAAGCCCTAGACCTTCATCGCCAGCAAAGGAGTGAAGTTGGTGGCCATTAGTGCTGAAggtgtgcagggggacaagaggcatggacagtggagaggaaagaggtttctt Alignment from CESAR gaGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGAC-TTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAg atgaacttccactcatgacctttgaccctgagcccgtttctcctccataggtGCGAGACTGCCTAGGCCTGACAAAGGCAAGATGTGCTTTCACAAAATCGCCAATGTCAATAAAGCCCTAGACCTTCATCGCCAGCAAAGGAGTGAAGTTGGTGGCCATTAGTGCTGAAggtgtgcagggggacaagaggcatggacagtggagaggaaagaggtttctt Alignment from Spaln_aa2Genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGAC-TTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG atgaacttccactcatgacctttgaccctgagcccgtttctcctccatagGTGCGAGACTGCCTAGGCCTGACAAAGGCAAGATGTGCTTTCACAAAATCGCCAATGTCAATAAAGCCCTAGACcTTCATCGCCAGCAAAGGAGTGAAGTTGGTGGCCATTAGTGCTGAAGgtgtgcagggggacaagaggcatggacagtggagaggaaagaggtttctt Alignment from Spaln_nt2Genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGA-CTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG atgaacttccactcatgacctttgaccctgagcccgtttctcctccatagGTGCGAGACTGCCTAGGCCTGACAAAGGCAAGATGTGCTTTCACAAAATCGCCAATGTCAATAAAGCCCTAGACCTTCATCGCCAGCAAAGGAGTGAAGTTGGTGGCCATTAGTGCTGAAGgtgtgcagggggacaagaggcatggacagtggagaggaaagaggtttctt Alignment from Pairagon GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGA-CTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG atgaacttccactcatgacctttgaccctgagcccgtttctcctccatagGTGCGAGACTGCCTAGGCCTGACAAAGGCAAGATGTGCTTTCACAAAATCGCCAATGTCAATAAAGCCCTAGACCTTCATCGCCAGCAAAGGAGTGAAGTTGGTGGCCATTAGTGCTGAAGgtgtgcagggggacaagaggcatggacagtggagaggaaagaggtttctt Alignment from Exonerate_protein2genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGAC-TTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG atgaacttccactcatgacctttgaccctgagcccgtttctcctccatagGTGCGAGACTGCCTAGGCCTGACAAAGGCAAGATGTGCTTTCACAAAATCGCCAATGTCAATAAAGCCCTAGACCTTCATCGCCAGCAAAGGAGTGAAGTTGGTGGCCATTAGTGCTGAAGgtgtgcagggggacaagaggcatggacagtggagaggaaagaggtttctt Alignment from Exonerate_coding2genome GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGAC-TTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG atgaacttccactcatgacctttgaccctgagcccgtttctcctccatagGTGCGAGACTGCCTAGGCCTGACAAAGGCAAGATGTGCTTTCACAAAATCGCCAATGTCAATAAAGCCCTAGACCTTCATCGCCAGCAAAGGAGTGAAGTTGGTGGCCATTAGTGCTGAAGgtgtgcagggggacaagaggcatggacagtggagaggaaagaggtttctt Alignment from GeneWise GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTA-GACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG atgaacttccactcatgacctttgaccctgagcccgtttctcctccatagGTGCGAGACTGCCTAGGCCTGACAAAGGCAAGATGTGCTTTCACAAAATCGCCAATGTCAATAAAGCCCTAGACCTTCATCGCCAGCAAAGGAGTGAAGTTGGTGGCCATTAGTGCTGAAGgtgtgcagggggacaagaggcatggacagtggagaggaaagaggtttctt #### Acy3_ID250_4 --> 2 - 1 Original Alignment gtCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGG-GCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAg atagctaagcccaggctgtttgcctgtcctgtcctccttttgtttggcaggtCTGGAGATGGGCCCACAGCCTCAAGGAGTGCTGCGGCGCTGACCTGTTCTCCCGGATGCGAGCTCTAGTGGCATCCATTCTGGACTTCATTGAGCTCTTTAACCAAggtgagcccttccagtggcttgtcaggaaaatcgatctgaggagagggtta Alignment from CESAR gtCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGG-GCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAg atagctaagcccaggctgtttgcctgtcctgtcctccttttgtttggcaggtCTGGAGATGGGCCCACAGCCTCAAGGAGTGCTGCGGCGCTGACCTGTTCTCCCGGATGCGAGCTCTAGTGGCATCCATTCTGGACTTCATTGAGCTCTTTAACCAAggtgagcccttccagtggcttgtcaggaaaatcgatctgaggagagggtta Alignment from Spaln_aa2Genome GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGG-GCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG atagctaagcccaggctgtttgcctgtcctgtcctccttttgtttggcagGTCTGGAGATGGGCCCACAGCCTCAAGGAGTGCTGCGGcGCTGACCTGTTCTCCCGGATGCGAGCTCTAGTGGCATCCATTCTGGACTTCATTGAGCTCTTTAACCAAGgtgagcccttccagtggcttgtcaggaaaatcgatctgaggagagggtta Alignment from Spaln_nt2Genome GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGG-GCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG atagctaagcccaggctgtttgcctgtcctgtcctccttttgtttggcagGTCTGGAGATGGGCCCACAGCCTCAAGGAGTGCTGCGGCGCTGACCTGTTCTCCCGGATGCGAGCTCTAGTGGCATCCATTCTGGACTTCATTGAGCTCTTTAACCAAGgtgagcccttccagtggcttgtcaggaaaatcgatctgaggagagggtta Alignment from Pairagon GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGG-GCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG atagctaagcccaggctgtttgcctgtcctgtcctccttttgtttggcagGTCTGGAGATGGGCCCACAGCCTCAAGGAGTGCTGCGGCGCTGACCTGTTCTCCCGGATGCGAGCTCTAGTGGCATCCATTCTGGACTTCATTGAGCTCTTTAACCAAGgtgagcccttccagtggcttgtcaggaaaatcgatctgaggagagggtta Alignment from Exonerate_protein2genome GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGG-GCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG atagctaagcccaggctgtttgcctgtcctgtcctccttttgtttggcagGTCTGGAGATGGGCCCACAGCCTCAAGGAGTGCTGCGGCGCTGACCTGTTCTCCCGGATGCGAGCTCTAGTGGCATCCATTCTGGACTTCATTGAGCTCTTTAACCAAGgtgagcccttccagtggcttgtcaggaaaatcgatctgaggagagggtta Alignment from Exonerate_coding2genome GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGG-GCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG atagctaagcccaggctgtttgcctgtcctgtcctccttttgtttggcagGTCTGGAGATGGGCCCACAGCCTCAAGGAGTGCTGCGGCGCTGACCTGTTCTCCCGGATGCGAGCTCTAGTGGCATCCATTCTGGACTTCATTGAGCTCTTTAACCAAGgtgagcccttccagtggcttgtcaggaaaatcgatctgaggagagggtta Alignment from GeneWise GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGG-GCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGCTCTTCAACCAAG atagctaagcccaggctgtttgcctgtcctgtcctccttttgtttggcagGTCTGGAGATGGGCCCACAGCCTCAAGGAGTGCTGCGGCGCTGACCTGTTCTCCCGGATGCGAGCTCTAGTGGCATCCATTCTGGACTTCATTGAGCTCTTTAACCAAGgtgagcccttccagtggcttgtcaggaaaatcgatctgaggagagggtta #### Adrbk1_ID480_15 --> 1 - 0 Original Alignment gGCTCAGGAGGTAAAAGAAAGTCCTTTC-TTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG actcaacttgaacgatccagagtccaggtttttgtccttgttgttttaaggGCTCAGGAGGTAAAAGAAAGTCCCTTCCTTTCATTCTCTGGATTGGCAGATGGCCTTCTTACAGAAGgtcagtatataaccctccagggtgagatgtgtacctcctctgctgcccct Alignment from CESAR gGCTCAGGAGGTAAAAGAAAGTCCTTTC-TTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG actcaacttgaacgatccagagtccaggtttttgtccttgttgttttaaggGCTCAGGAGGTAAAAGAAAGTCCCTTCCTTTCATTCTCTGGATTGGCAGATGGCCTTCTTACAGAAGgtcagtatataaccctccagggtgagatgtgtacctcctctgctgcccct Alignment from Spaln_aa2Genome GGCTCAGGAGGTAAAAGAAAGTCCTTTC-TTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG actcaacttgaacgatccagagtccaggtttttgtccttgttgttttaagGGCTCAGGAGGTAAAAGAAAGTCCCTTCcTTTCATTCTCTGGATTGGCAGATGGCCTTCTTACAGAAGgtcagtatataaccctccagggtgagatgtgtacctcctctgctgcccct Alignment from Spaln_nt2Genome GGCTCAGGAGGTAAAAGAAAGTCCT-TTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG actcaacttgaacgatccagagtccaggtttttgtccttgttgttttaagGGCTCAGGAGGTAAAAGAAAGTCCCTTCCTTTCATTCTCTGGATTGGCAGATGGCCTTCTTACAGAAGgtcagtatataaccctccagggtgagatgtgtacctcctctgctgcccct Alignment from Pairagon GGCTCAGGAGGTAAAAGAAAGT-CCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG actcaacttgaacgatccagagtccaggtttttgtccttgttgttttaagGGCTCAGGAGGTAAAAGAAAGTCCCTTCCTTTCATTCTCTGGATTGGCAGATGGCCTTCTTACAGAAGgtcagtatataaccctccagggtgagatgtgtacctcctctgctgcccct Alignment from Exonerate_protein2genome GGGCTCAGGAGGTAAAAGAAAGTCCTTTC-TTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG actcaacttgaacgatccagagtccaggtttttgtccttgttgttttaaGGGCTCAGGAGGTAAAAGAAAGTCCCTTCCTTTCATTCTCTGGATTGGCAGATGGCCTTCTTACAGAAGgtcagtatataaccctccagggtgagatgtgtacctcctctgctgcccct Alignment from Exonerate_coding2genome GGGCTCAGGAGGTAAAAGAAAGTCCTTTC-TTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG actcaacttgaacgatccagagtccaggtttttgtccttgttgttttaaGGGCTCAGGAGGTAAAAGAAAGTCCCTTCCTTTCATTCTCTGGATTGGCAGATGGCCTTCTTACAGAAGgtcagtatataaccctccagggtgagatgtgtacctcctctgctgcccct Alignment from GeneWise -GCTCAGGAGGTAAAAGAAAGTCCTTTCTTT-CGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG actcaacttgaacgatccagagtccaggtttttgtccttgttgttttaagGGCTCAGGAGGTAAAAGAAAGTCCCTTCCTTTCATTCTCTGGATTGGCAGATGGCCTTCTTACAGAAGgtcagtatataaccctccagggtgagatgtgtacctcctctgctgcccct #### Adrbk1_ID483_12 --> 1 - 2 Original Alignment gGGCACACACGGGTACATGGCCCCCGAAGTCCTA-CAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGgg actccaaccacaaccttcttcctctttgagtaatgaattttttcttacaggGGCACACATGGGTACATGGCCCCCGAAGTACTACCAAAAGGGCGTAGCCTATGACAGCAGTGCCGACTGGTTCTCCCTGGGATGCATGCTCTTCAAGTTGTTGCGAgggtgagttggctagcctggatggggaatccagataggaagtgggggggaga Alignment from CESAR gGGCACACACGGGTACATGGCCCCCGAAGTCCTA-CAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGgg actccaaccacaaccttcttcctctttgagtaatgaattttttcttacaggGGCACACATGGGTACATGGCCCCCGAAGTACTACCAAAAGGGCGTAGCCTATGACAGCAGTGCCGACTGGTTCTCCCTGGGATGCATGCTCTTCAAGTTGTTGCGAgggtgagttggctagcctggatggggaatccagataggaagtgggggggaga Alignment from Spaln_aa2Genome GGGCACACACGGGTACATGGCCCCCGAAGTCCTA-CAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG actccaaccacaaccttcttcctctttgagtaatgaattttttcttacagGGGCACACATGGGTACATGGCCCCCGAAGTACTAcCAAAAGGGCGTAGCCTATGACAGCAGTGCCGACTGGTTCTCCCTGGGATGCATGCTCTTCAAGTTGTTGCGAGGgtgagttggctagcctggatggggaatccagataggaagtgggggggaga Alignment from Spaln_nt2Genome GGGCACACACGGGTACATGGCCCCCGAAGTCCTAC-AGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG actccaaccacaaccttcttcctctttgagtaatgaattttttcttacagGGGCACACATGGGTACATGGCCCCCGAAGTACTACCAAAAGGGCGTAGCCTATGACAGCAGTGCCGACTGGTTCTCCCTGGGATGCATGCTCTTCAAGTTGTTGCGAGGgtgagttggctagcctggatggggaatccagataggaagtgggggggaga Alignment from Pairagon GGGCACACACGGGTACATGGCCCCCGAAGTCCTA-CAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG actccaaccacaaccttcttcctctttgagtaatgaattttttcttacagGGGCACACATGGGTACATGGCCCCCGAAGTACTACCAAAAGGGCGTAGCCTATGACAGCAGTGCCGACTGGTTCTCCCTGGGATGCATGCTCTTCAAGTTGTTGCGAGGgtgagttggctagcctggatggggaatccagataggaagtgggggggaga Alignment from Exonerate_protein2genome GGGCACACACGGGTACATGGCCCCCGAAGTCCTA-CAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG actccaaccacaaccttcttcctctttgagtaatgaattttttcttacagGGGCACACATGGGTACATGGCCCCCGAAGTACTACCAAAAGGGCGTAGCCTATGACAGCAGTGCCGACTGGTTCTCCCTGGGATGCATGCTCTTCAAGTTGTTGCGAGGgtgagttggctagcctggatggggaatccagataggaagtgggggggaga Alignment from Exonerate_coding2genome GGGCACACACGGGTACATGGCCCCCGAAGTCCTA-CAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG actccaaccacaaccttcttcctctttgagtaatgaattttttcttacagGGGCACACATGGGTACATGGCCCCCGAAGTACTACCAAAAGGGCGTAGCCTATGACAGCAGTGCCGACTGGTTCTCCCTGGGATGCATGCTCTTCAAGTTGTTGCGAGGgtgagttggctagcctggatggggaatccagataggaagtgggggggaga Alignment from GeneWise GGGCACACACGGGTACATGGCCCCCGAAGTC-CTACAGAAGGGCGTGGCCTATGACAGCAGTGCAGACTGGTTCTCCCTGGGCTGCATGCTCTTCAAGTTGTTGCGGGG actccaaccacaaccttcttcctctttgagtaatgaattttttcttacagGGGCACACATGGGTACATGGCCCCCGAAGTACTACCAAAAGGGCGTAGCCTATGACAGCAGTGCCGACTGGTTCTCCCTGGGATGCATGCTCTTCAAGTTGTTGCGAGGgtgagttggctagcctggatggggaatccagataggaagtgggggggaga #### Adrbk1_ID484_11 --> 0 - 2 Original Alignment CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGAC-CTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTgt agagggtccgagctggcatcatgatgagcacattaactttccccttctagCCAGCCAACATTCTCCTGGACGAACATGGCCATGTGAGAATCTCAGACCTTGAGCCTGGCATGTGACTTCTCCAAGAAGAGGCCCCATGCCAGTgtgtaagcgcctagctattcactccaaccacaaccttcttcctctttgtgtg Alignment from CESAR CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGAC-CTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTgt agagggtccgagctggcatcatgatgagcacattaactttccccttctagCCAGCCAACATTCTCCTGGACGAACATGGCCATGTGAGAATCTCAGACCTTGAGCCTGGCATGTGACTTCTCCAAGAAGAGGCCCCATGCCAGTgtgtaagcgcctagctattcactccaaccacaaccttcttcctctttgagta Alignment from Spaln_aa2Genome CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTG-GGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT agagggtccgagctggcatcatgatgagcacattaactttccccttctagCCAGCCAACATTCTCCTGGACGAACATGGCCATGTGAGAATCTCAGACCTTgAGCCTGGCATGTGACTTCTCCAAGAAGAGGCCCCATGCCAGTGTgtaagcgcctagctattcactccaaccacaaccttcttcctctttgtgtg Alignment from Spaln_nt2Genome CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTGG-GCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT agagggtccgagctggcatcatgatgagcacattaactttccccttctagCCAGCCAACATTCTCCTGGACGAACATGGCCATGTGAGAATCTCAGACCTTGAGCCTGGCATGTGACTTCTCCAAGAAGAGGCCCCATGCCAGTGTgtaagcgcctagctattcactccaaccacaaccttcttcctctttgtgtg Alignment from Pairagon CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACC-TGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT agagggtccgagctggcatcatgatgagcacattaactttccccttctagCCAGCCAACATTCTCCTGGACGAACATGGCCATGTGAGAATCTCAGACCTTGAGCCTGGCATGTGACTTCTCCAAGAAGAGGCCCCATGCCAGTGTgtaagcgcctagctattcactccaaccacaaccttcttcctctttgtgtg Alignment from Exonerate_protein2genome CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGAC-CTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT agagggtccgagctggcatcatgatgagcacattaactttccccttctagCCAGCCAACATTCTCCTGGACGAACATGGCCATGTGAGAATCTCAGACCTTGAGCCTGGCATGTGACTTCTCCAAGAAGAGGCCCCATGCCAGTGTgtaagcgcctagctattcactccaaccacaaccttcttcctctttgtgtg Alignment from Exonerate_coding2genome CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGAC-CTGGGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT agagggtccgagctggcatcatgatgagcacattaactttccccttctagCCAGCCAACATTCTCCTGGACGAACATGGCCATGTGAGAATCTCAGACCTTGAGCCTGGCATGTGACTTCTCCAAGAAGAGGCCCCATGCCAGTGTgtaagcgcctagctattcactccaaccacaaccttcttcctctttgtgtg Alignment from GeneWise CCAGCCAACATTCTCCTGGATGAACATGGCCATGTGAGAATCTCGGACCTG-GGCCTAGCCTGTGACTTCTCCAAGAAGAGGCCTCATGCCAGTGT agagggtccgagctggcatcatgatgagcacattaactttccccttctagCCAGCCAACATTCTCCTGGACGAACATGGCCATGTGAGAATCTCAGACCTTGAGCCTGGCATGTGACTTCTCCAAGAAGAGGCCCCATGCCAGTGTgtaagcgcctagctattcactccaaccacaaccttcttcctctttgtgtg #### Adrbk1_ID485_10 --> 2 - 0 Original Alignment GAACg gtGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATG-CGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG GAACggcaagatagcttaggggatggagtaacctactctgtcccctgcaggtGGGGACCTGCACTACCACTTATCACAGCATGGAGTCTTCTCTGAAGCCGACATGCCGTTTCTATGCTGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCACTTTGTAGTCTTCAGGGACTTGAAGgtaaagggcagctgatagggcattccacctctaccctccccctgctccac Alignment from CESAR GAACg gtGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATG-CGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG GAACggtaccttagcttaggggatggagtaacctactctgtcccctgcaggtGGGGACCTGCACTACCACTTATCACAGCATGGAGTCTTCTCTGAAGCCGACATGCCGTTTCTATGCTGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCACTTTGTAGTCTTCAGGGACTTGAAGgtaaagggcagctgatagggcattccacctctaccctccccctgctccac Alignment from Spaln_aa2Genome GAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTC-TACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG GAACGgcaagatagcttaggggatggagtaacctactctgtcccctgcagGTGGGGACCTGCACTACCACTTATCACAGCATGGAGTCTTCTCTGAAGCCGACATGCCGTTTcTATGCTGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCACTTTGTAGTCTTCAGGGACTTGAAGgtaaagggcagctgatagggcattccacctctaccctccccctgctccac Alignment from Spaln_nt2Genome GAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGC-GCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG GAACGgcaagatagcttaggggatggagtaacctactctgtcccctgcagGTGGGGACCTGCACTACCACTTATCACAGCATGGAGTCTTCTCTGAAGCCGACATGCCGTTTCTATGCTGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCACTTTGTAGTCTTCAGGGACTTGAAGgtaaagggcagctgatagggcattccacctctaccctccccctgctccac Alignment from Pairagon GAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATG-CGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG GAACGgcaagatagcttaggggatggagtaacctactctgtcccctgcagGTGGGGACCTGCACTACCACTTATCACAGCATGGAGTCTTCTCTGAAGCCGACATGCCGTTTCTATGCTGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCACTTTGTAGTCTTCAGGGACTTGAAGgtaaagggcagctgatagggcattccacctctaccctccccctgctccac Alignment from Exonerate_protein2genome GAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATG-CGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG GAACGgcaagatagcttaggggatggagtaacctactctgtcccctgcagGTGGGGACCTGCACTACCACTTATCACAGCATGGAGTCTTCTCTGAAGCCGACATGCCGTTTCTATGCTGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCACTTTGTAGTCTTCAGGGACTTGAAGgtaaagggcagctgatagggcattccacctctaccctccccctgctccac Alignment from Exonerate_coding2genome GAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATG-CGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG GAACGgcaagatagcttaggggatggagtaacctactctgtcccctgcagGTGGGGACCTGCACTACCACTTATCACAGCATGGAGTCTTCTCTGAAGCCGACATGCCGTTTCTATGCTGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCACTTTGTAGTCTTCAGGGACTTGAAGgtaaagggcagctgatagggcattccacctctaccctccccctgctccac Alignment from GeneWise C------------------------------------------------GGTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATG-CGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG CGGCAAGATAGCTTA-GGGGATGGAGTAACCTACT--CTGTCCCCTGCAGGTGGGGACCTGCACTACCACTTATCACAGCATGGAGTCTTCTCTGAAGCCGACATGCCGTTTCTATGCTGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCACTTTGTAGTCTTCAGGGACTTGAAGgtaaagggcagctgatagggcattccacctctaccctccccctgctccac #### Adrbk1_ID487_8 --> 1 - 0 Original Alignment gTACGCCATGAAGTGTCTG---GAC-AAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG tctgccttgcagggcttgcttatgctgcagttttgagttttgtcttttaggTATGCCATGAAGTGTCTGGACAACCAAGAAACGCATCAAGATGAAACAGGGAGAGACCCTGGCTCTGAACAAGCGGATTATGCTTTCACTTGTCAGCACTGGGgtgagttgagtggccaagtgggcctccatattgacctctgaccccagcct Alignment from CESAR gTACGCCATGAAGTGTCTGGAC----AAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG tctgccttgcagggcttgcttatgctgcagttttgagttttgtcttttaggTATGCCATGAAGTGTCTGGACAACCAAGAAACGCATCAAGATGAAACAGGGAGAGACCCTGGCTCTGAACAAGCGGATTATGCTTTCACTTGTCAGCACTGGGgtgagttgagtggccaagtgggcctccatattgacctctgaccccagcct Alignment from Spaln_aa2Genome GTACGCCATGAAGTGTCTGGAC----AAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG tctgccttgcagggcttgcttatgctgcagttttgagttttgtcttttagGTATGCCATGAAGTGTCTGGACAACcAAGAAACGCATCAAGATGAAACAGGGAGAGACCCTGGCTCTGAACAAGCGGATTATGCTTTCACTTGTCAGCACTGGGgtgagttgagtggccaagtgggcctccatattgacctctgaccccagcct Alignment from Spaln_nt2Genome GTACGCCATGAAGTGTCTGGA----CAAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG tctgccttgcagggcttgcttatgctgcagttttgagttttgtcttttagGTATGCCATGAAGTGTCTGGACAACCAAGAAACGCATCAAGATGAAACAGGGAGAGACCCTGGCTCTGAACAAGCGGATTATGCTTTCACTTGTCAGCACTGGGgtgagttgagtggccaagtgggcctccatattgacctctgaccccagcct Alignment from Pairagon GTACGCCATGAAGTGTCTGGA----CAAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG tctgccttgcagggcttgcttatgctgcagttttgagttttgtcttttagGTATGCCATGAAGTGTCTGGACAACCAAGAAACGCATCAAGATGAAACAGGGAGAGACCCTGGCTCTGAACAAGCGGATTATGCTTTCACTTGTCAGCACTGGGgtgagttgagtggccaagtgggcctccatattgacctctgaccccagcct Alignment from Exonerate_protein2genome GTACGCCATGAAGTGTCTGGAC----AAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG tctgccttgcagggcttgcttatgctgcagttttgagttttgtcttttagGTATGCCATGAAGTGTCTGGACAACCAAGAAACGCATCAAGATGAAACAGGGAGAGACCCTGGCTCTGAACAAGCGGATTATGCTTTCACTTGTCAGCACTGGGgtgagttgagtggccaagtgggcctccatattgacctctgaccccagcct Alignment from Exonerate_coding2genome GTACGCCATGAAGTGTCTGGAC----AAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG tctgccttgcagggcttgcttatgctgcagttttgagttttgtcttttagGTATGCCATGAAGTGTCTGGACAACCAAGAAACGCATCAAGATGAAACAGGGAGAGACCCTGGCTCTGAACAAGCGGATTATGCTTTCACTTGTCAGCACTGGGgtgagttgagtggccaagtgggcctccatattgacctctgaccccagcct Alignment from GeneWise GTACGCCATGAAGTGTCTGGAC------AAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG tctgccttgcagggcttgcttatgctgcagttttgagttttgtcttttagGTATGCCATGAAGTGTCTGGACAACC--AAGAAACGCATCAAGATGAAACAGGGAGAGACCCTGGCTCTGAACAAGCGGATTATGCTTTCACTTGTCAGCACTGGGgtgagttgagtggccaagtgggcctccatattgacctctgaccccagcct #### Adrbk1_ID488_7 --> 0 - 2 Original Alignment CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAG-GTCTATGGGTGCCGGAAAGCAGACACAGGCAAGat cctctgctgttgggctgcgaaggcagtgcctcactctctcttccccacagCTGACCATGAATGATTTCAGTGTACATCGAATCATCGGACGTGGGGGCTTCGGTGAGCGTCTATGGGTGCCGTAAAGCGGATACAGGCAAGatgtgaagaccctgatgagctggactgggtggggtggccaaggaaggagtca Alignment from CESAR CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAG-GTCTATGGGTGCCGGAAAGCAGACACAGGCAAGat cctctgctgttgggctgcgaaggcagtgcctcactctctcttccccacagCTGACCATGAATGATTTCAGTGTACATCGAATCATCGGACGTGGGGGCTTCGGTGAGCGTCTATGGGTGCCGTAAAGCGGATACAGGCAAGatgtgaagaccctgatgagctggactgggtggggtggccaaggaaggagtca Alignment from Spaln_aa2Genome CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAG-GTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT cctctgctgttgggctgcgaaggcagtgcctcactctctcttccccacagCTGACCATGAATGATTTCAGTGTACATCGAATCATCGGACGTGGGGGCTTCGGTGAGcGTCTATGGGTGCCGTAAAGCGGATACAGGCAAGATgtgaagaccctgatgagctggactgggtggggtggccaaggaaggagtca Alignment from Spaln_nt2Genome ACCTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAG-GTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT cctctgctgttgggctgcgaaggcagtgcctcactctctcttccccacAGCTGACCATGAATGATTTCAGTGTACATCGAATCATCGGACGTGGGGGCTTCGGTGAGCGTCTATGGGTGCCGTAAAGCGGATACAGGCAAGATgtgaagaccctgatgagctggactgggtggggtggccaaggaaggagtca Alignment from Pairagon CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAG-GTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT cctctgctgttgggctgcgaaggcagtgcctcactctctcttccccacagCTGACCATGAATGATTTCAGTGTACATCGAATCATCGGACGTGGGGGCTTCGGTGAGCGTCTATGGGTGCCGTAAAGCGGATACAGGCAAGATgtgaagaccctgatgagctggactgggtggggtggccaaggaaggagtca Alignment from Exonerate_protein2genome CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAG-GTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT cctctgctgttgggctgcgaaggcagtgcctcactctctcttccccacagCTGACCATGAATGATTTCAGTGTACATCGAATCATCGGACGTGGGGGCTTCGGTGAGCGTCTATGGGTGCCGTAAAGCGGATACAGGCAAGATgtgaagaccctgatgagctggactgggtggggtggccaaggaaggagtca Alignment from Exonerate_coding2genome CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAG-GTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT cctctgctgttgggctgcgaaggcagtgcctcactctctcttccccacagCTGACCATGAATGATTTCAGTGTACATCGAATCATCGGACGTGGGGGCTTCGGTGAGCGTCTATGGGTGCCGTAAAGCGGATACAGGCAAGATgtgaagaccctgatgagctggactgggtggggtggccaaggaaggagtca Alignment from GeneWise CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAG-GTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT cctctgctgttgggctgcgaaggcagtgcctcactctctcttccccacagCTGACCATGAATGATTTCAGTGTACATCGAATCATCGGACGTGGGGGCTTCGGTGAGCGTCTATGGGTGCCGTAAAGCGGATACAGGCAAGATgtgaagaccctgatgagctggactgggtggggtggccaaggaaggagtca #### Adrbk1_ID489_6 --> 1 - 0 Original Alignment tGACAAGTTCACACGG-TTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC agcccagtgcctggatgcttgcttgagtctcatacacttgtctcccccagtGATAAGTTCACACATCTTCTGTCAGTGGAAGAATATTGAGCTCAACATCCATgttagttggttcagggaactggcaggccaggaggccctgggttgtactcc Alignment from CESAR tGACAAGTTCACACGG-TTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC agcccagtgcctggatgcttgcttgagtctcatacacttgtctcccccagtGATAAGTTCACACATCTTCTGTCAGTGGAAGAATATTGAGCTCAACATCCATgttagttggttcagggaactggcaggccaggaggccctgggttgtactcc Alignment from Spaln_aa2Genome TGACAAGTTCACACGG-TTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC agcccagtgcctggatgcttgcttgagtctcatacacttgtctcccccagTGATAAGTTCACACATcTTCTGTCAGTGGAAGAATATTGAGCTCAACATCCATgttagttggttcagggaactggcaggccaggaggccctgggttgtactcc Alignment from Spaln_nt2Genome TGACAAGTTCACACGG-TTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC agcccagtgcctggatgcttgcttgagtctcatacacttgtctcccccagTGATAAGTTCACACATCTTCTGTCAGTGGAAGAATATTGAGCTCAACATCCATgttagttggttcagggaactggcaggccaggaggccctgggttgtactcc Alignment from Pairagon TGACAAGTTCACACG-GTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC agcccagtgcctggatgcttgcttgagtctcatacacttgtctcccccagTGATAAGTTCACACATCTTCTGTCAGTGGAAGAATATTGAGCTCAACATCCATgttagttggttcagggaactggcaggccaggaggccctgggttgtactcc Alignment from Exonerate_protein2genome TGACAAGTTCACACGG-TTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC agcccagtgcctggatgcttgcttgagtctcatacacttgtctcccccagTGATAAGTTCACACATCTTCTGTCAGTGGAAGAATATTGAGCTCAACATCCATgttagttggttcagggaactggcaggccaggaggccctgggttgtactcc Alignment from Exonerate_coding2genome TGACAAGTTCACACGG-TTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC agcccagtgcctggatgcttgcttgagtctcatacacttgtctcccccagTGATAAGTTCACACATCTTCTGTCAGTGGAAGAATATTGAGCTCAACATCCATgttagttggttcagggaactggcaggccaggaggccctgggttgtactcc Alignment from GeneWise TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTTGAGCTCAACATCCAC agcccagtgcctggatgcttgcttgagtctcatacacttgtctcccccagtgataagTTCACACATC------TTCTGTCAGTGGAAGAATATTGAGCTCAACATCCATgttagttggttcagggaactggcaggccaggaggccctgggttgtactcc #### Afap1l2_ID12244_19 --> 0 - 0 Original Alignment CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCT-CTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG gtggtattatatacataataatttgaccactgcatgtcttatttcctcagCCACAGCCCAAAGCTGCCACCCCTAACCCCCCGCCAGACTCTACACCGGTTAATTCTGCATCTGTACTCAAGAACAGGCCACCTTTCTGTCATGGTCACAGGTAAAGGGACTGTCCTGCAGAAAGCCAAGgtgagtagccgctctccaattgtagatgtagccttgtggcctttgcacta Alignment from CESAR CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCT-CTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG gtggtattatatacataataatttgaccactgcatgtcttatttcctcagCCACAGCCCAAAGCTGCCACCCCTAACCCCCCGCCAGACTCTACACCGGTTAATTCTGCATCTGTACTCAAGAACAGGCCACCTTTCTGTCATGGTCACAGGTAAAGGGACTGTCCTGCAGAAAGCCAAGgtgagtagccgctctccaattgtagatgtagccttgtggcctttgcacta Alignment from Spaln_aa2Genome CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCT-CTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG gtggtattatatacataataatttgaccactgcatgtcttatttcctcagCCACAGCCCAAAGCTGCCACCCCTAACCCCCCGCCAGACTCTACACCGGTTAATTCTGCATCTGTACTCAAGAACAGGCCAcCTTTCTGTCATGGTCACAGGTAAAGGGACTGTCCTGCAGAAAGCCAAGgtgagtagccgctctccaattgtagatgtagccttgtggcctttgcacta Alignment from Spaln_nt2Genome CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTC-TTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG gtggtattatatacataataatttgaccactgcatgtcttatttcctcagCCACAGCCCAAAGCTGCCACCCCTAACCCCCCGCCAGACTCTACACCGGTTAATTCTGCATCTGTACTCAAGAACAGGCCACCTTTCTGTCATGGTCACAGGTAAAGGGACTGTCCTGCAGAAAGCCAAGgtgagtagccgctctccaattgtagatgtagccttgtggcctttgcacta Alignment from Pairagon CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCC-TCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG gtggtattatatacataataatttgaccactgcatgtcttatttcctcagCCACAGCCCAAAGCTGCCACCCCTAACCCCCCGCCAGACTCTACACCGGTTAATTCTGCATCTGTACTCAAGAACAGGCCACCTTTCTGTCATGGTCACAGGTAAAGGGACTGTCCTGCAGAAAGCCAAGgtgagtagccgctctccaattgtagatgtagccttgtggcctttgcacta Alignment from Exonerate_protein2genome CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCT-CTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG gtggtattatatacataataatttgaccactgcatgtcttatttcctcagCCACAGCCCAAAGCTGCCACCCCTAACCCCCCGCCAGACTCTACACCGGTTAATTCTGCATCTGTACTCAAGAACAGGCCACCTTTCTGTCATGGTCACAGGTAAAGGGACTGTCCTGCAGAAAGCCAAGgtgagtagccgctctccaattgtagatgtagccttgtggcctttgcacta Alignment from Exonerate_coding2genome CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCT-CTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG gtggtattatatacataataatttgaccactgcatgtcttatttcctcagCCACAGCCCAAAGCTGCCACCCCTAACCCCCCGCCAGACTCTACACCGGTTAATTCTGCATCTGTACTCAAGAACAGGCCACCTTTCTGTCATGGTCACAGGTAAAGGGACTGTCCTGCAGAAAGCCAAGgtgagtagccgctctccaattgtagatgtagccttgtggcctttgcacta Alignment from GeneWise CCACAGCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCT-CTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAGGAATGGGAGAAGAAAGGAGCCAGT gtggtattatatacataataatttgaccactgcatgtcttatttcctcagCCACAGCCCAAAGCTGCCACCCCTAACCCCCCGCCAGACTCTACACCGGTTAATTCTGCATCTGTACTCAAGAACAGGCCACCTTTCTGTCATGGTCACAGGTAAAGGGACTGTCCTGCAGAAAGCCAAGGTGAGTAGCCGCTCTCCAATTGTAgatgtagccttgtggcctttgcacta #### Afap1l2_ID12248_15 --> 0 - 0 Original Alignment GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCAC-ACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG cttacagctaagggaataagggagtaaattttcctgggcccttctcttagGTGGAACCGGCTGAGGAAGCAGCCCCTACTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTGTACTTGGATCTTACACCAGTCAAGTCCTTCCTGCACAGTAGTAGCGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGATGTAGCCGAGACCCTCACAGTAGACCCGGAGTCAACCACCACCCAGGAGGAGCCCCACCACAGAGTCACCAGGAGACCCTGAGTTGCAGCAAgtgagtgtgatttggccaacaactgtaccctgcctcctcaccaggccctg Alignment from CESAR GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCAC-ACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG cttacagctaagggaataagggagtaaattttcctgggcccttctcttagGTGGAACCGGCTGAGGAAGCAGCCCCTACTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTGTACTTGGATCTTACACCAGTCAAGTCCTTCCTGCACAGTAGTAGCGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGATGTAGCCGAGACCCTCACAGTAGACCCGGAGTCAACCACCACCCAGGAGGAGCCCCACCACAGAGTCACCAGGAGACCCTGAGTTGCAGCAAgtgagtgtgatttggccaacaactgtaccctgcctcctcaccaggccctg Alignment from Spaln_aa2Genome GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCAC-ACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG cttacagctaagggaataagggagtaaattttcctgggcccttctcttagGTGGAACCGGCTGAGGAAGCAGCCCCTACTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTGTACTTGGATCTTACACCAGTCAAGTCCTTCCTGCACAGTAGTAGCGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGATGTAGCCGAGACCCTCACAGTAGACCCGGAGTCAACCACCACCCAGGAGGAGCCCCACcACAGAGTCACCAGGAGACCCTGAGTTGCAGCAAgtgagtgtgatttggccaacaactgtaccctgcctcctcaccaggccctg Alignment from Spaln_nt2Genome GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCA-CACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG cttacagctaagggaataagggagtaaattttcctgggcccttctcttagGTGGAACCGGCTGAGGAAGCAGCCCCTACTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTGTACTTGGATCTTACACCAGTCAAGTCCTTCCTGCACAGTAGTAGCGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGATGTAGCCGAGACCCTCACAGTAGACCCGGAGTCAACCACCACCCAGGAGGAGCCCCACCACAGAGTCACCAGGAGACCCTGAGTTGCAGCAAgtgagtgtgatttggccaacaactgtaccctgcctcctcaccaggccctg Alignment from Pairagon GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCA-CACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG cttacagctaagggaataagggagtaaattttcctgggcccttctcttagGTGGAACCGGCTGAGGAAGCAGCCCCTACTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTGTACTTGGATCTTACACCAGTCAAGTCCTTCCTGCACAGTAGTAGCGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGATGTAGCCGAGACCCTCACAGTAGACCCGGAGTCAACCACCACCCAGGAGGAGCCCCACCACAGAGTCACCAGGAGACCCTGAGTTGCAGCAAgtgagtgtgatttggccaacaactgtaccctgcctcctcaccaggccctg Alignment from Exonerate_protein2genome GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCAC-ACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG cttacagctaagggaataagggagtaaattttcctgggcccttctcttagGTGGAACCGGCTGAGGAAGCAGCCCCTACTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTGTACTTGGATCTTACACCAGTCAAGTCCTTCCTGCACAGTAGTAGCGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGATGTAGCCGAGACCCTCACAGTAGACCCGGAGTCAACCACCACCCAGGAGGAGCCCCACCACAGAGTCACCAGGAGACCCTGAGTTGCAGCAAgtgagtgtgatttggccaacaactgtaccctgcctcctcaccaggccctg Alignment from Exonerate_coding2genome GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCAC-ACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG cttacagctaagggaataagggagtaaattttcctgggcccttctcttagGTGGAACCGGCTGAGGAAGCAGCCCCTACTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTGTACTTGGATCTTACACCAGTCAAGTCCTTCCTGCACAGTAGTAGCGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGATGTAGCCGAGACCCTCACAGTAGACCCGGAGTCAACCACCACCCAGGAGGAGCCCCACCACAGAGTCACCAGGAGACCCTGAGTTGCAGCAAgtgagtgtgatttggccaacaactgtaccctgcctcctcaccaggccctg Alignment from GeneWise GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCAC-ACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG cttacagctaagggaataagggagtaaattttcctgggcccttctcttagGTGGAACCGGCTGAGGAAGCAGCCCCTACTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTGTACTTGGATCTTACACCAGTCAAGTCCTTCCTGCACAGTAGTAGCGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGATGTAGCCGAGACCCTCACAGTAGACCCGGAGTCAACCACCACCCAGGAGGAGCCCCACCACAGAGTCACCAGGAGACCCTGAGTTGCAGCAAgtgagtgtgatttggccaacaactgtaccctgcctcctcaccaggccctg #### Aip_ID330_5 --> 0 - 1 Original Alignment GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGC-TCCTCCATCCTCAACAAGTATGATg ctgcagccaggactcagcatcttcgcttgctctttctttcccaacaccagGAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCCTCCTCCATCCTCAACAAGTATGATggtaatgaccatgcccacttgcagcccagactggactcttcccatccagtg Alignment from CESAR GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGC-TCCTCCATCCTCAACAAGTATGATg ctgcagccaggactcagcatcttcgcttgctctttctttcccaacaccagGAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCCTCCTCCATCCTCAACAAGTATGATggtaatgaccatgcccacttgcagcccagactggactcttcccatccagtg Alignment from Spaln_aa2Genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGC-TCCTCCATCCTCAACAAGTATGATG ctgcagccaggactcagcatcttcgcttgctctttctttcccaacaccagGAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCcTCCTCCATCCTCAACAAGTATGATGgtaatgaccatgcccacttgcagcccagactggactcttcccatccagtg Alignment from Spaln_nt2Genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTG-CTCCTCCATCCTCAACAAGTATGATG ctgcagccaggactcagcatcttcgcttgctctttctttcccaacaccagGAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCCTCCTCCATCCTCAACAAGTATGATGgtaatgaccatgcccacttgcagcccagactggactcttcccatccagtg Alignment from Pairagon GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTG-CTCCTCCATCCTCAACAAGTATGATG ctgcagccaggactcagcatcttcgcttgctctttctttcccaacaccagGAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCCTCCTCCATCCTCAACAAGTATGATGgtaatgaccatgcccacttgcagcccagactggactcttcccatccagtg Alignment from Exonerate_protein2genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGC-TCCTCCATCCTCAACAAGTATGATG ctgcagccaggactcagcatcttcgcttgctctttctttcccaacaccagGAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCCTCCTCCATCCTCAACAAGTATGATGgtaatgaccatgcccacttgcagcccagactggactcttcccatccagtg Alignment from Exonerate_coding2genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGC-TCCTCCATCCTCAACAAGTATGATG ctgcagccaggactcagcatcttcgcttgctctttctttcccaacaccagGAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCCTCCTCCATCCTCAACAAGTATGATGgtaatgaccatgcccacttgcagcccagactggactcttcccatccagtg Alignment from GeneWise GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGC-TCCTCCATCCTCAACAAGTATGATG ctgcagccaggactcagcatcttcgcttgctctttctttcccaacaccagGAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCCTCCTCCATCCTCAACAAGTATGATGgtaatgaccatgcccacttgcagcccagactggactcttcccatccagtg #### Aldh3b2_ID238_4 --> 0 - 1 Original Alignment CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATT-GCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg tcattcatctgacacttcatctaccactcatttcttttgtctctcttcagCTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTTGTGCTTATCATTCGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCGggtgagcggggttctgagcccacctattctgatgagagttcccaaagaagg Alignment from CESAR CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATT-GCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg tcattcatctgacacttcatctaccactcatttcttttgtctctcttcagCTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTTGTGCTTATCATTCGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCGggtgagcggggttctgagcccacctattctgatgagagttcccaaagaagg Alignment from Spaln_aa2Genome CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATT-GCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG tcattcatctgacacttcatctaccactcatttcttttgtctctcttcagCTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTTGTGCTTATCATTcGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCGGgtgagcggggttctgagcccacctattctgatgagagttcccaaagaagg Alignment from Spaln_nt2Genome CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATT-GCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG tcattcatctgacacttcatctaccactcatttcttttgtctctcttcagCTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTTGTGCTTATCATTCGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCGGgtgagcggggttctgagcccacctattctgatgagagttcccaaagaagg Alignment from Pairagon CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATT-GCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG tcattcatctgacacttcatctaccactcatttcttttgtctctcttcagCTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTTGTGCTTATCATTCGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCGGgtgagcggggttctgagcccacctattctgatgagagttcccaaagaagg Alignment from Exonerate_protein2genome CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATT-GCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG tcattcatctgacacttcatctaccactcatttcttttgtctctcttcagCTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTTGTGCTTATCATTCGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCGGgtgagcggggttctgagcccacctattctgatgagagttcccaaagaagg Alignment from Exonerate_coding2genome CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATT-GCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG tcattcatctgacacttcatctaccactcatttcttttgtctctcttcagCTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTTGTGCTTATCATTCGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCGGgtgagcggggttctgagcccacctattctgatgagagttcccaaagaagg Alignment from GeneWise CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATT-GCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG tcattcatctgacacttcatctaccactcatttcttttgtctctcttcagCTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTTGTGCTTATCATTCGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCGGgtgagcggggttctgagcccacctattctgatgagagttcccaaagaagg #### Aldh3b2_ID241_7 --> 2 - 1 Original Alignment gaAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTC-TATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTg aggctgaaggtaatgctagttgactaggaaaagatttctgtctcctccaggaAGCCCTCGAGTAGGCAAGATTGTGATGACGGCTGCGGCCAATCACCTGACCCCCATCTCCCTGGAACTGGGGGGTAAGAACCCCTGCTAT---GATGACAACTGTGACCCCCAGACAGTCACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGCCAGACCTGTGTGGCCCCTGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCTTGCAGAATTCCATCACTCGTTTCCTATGGAGATAATCCACAGACTTCCCCCAACCTGGGCAGGATAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGGGTGGCCATCAGTGGCCAGAGTGATGAGGGAGAGTGCTACATTggtacgcctcttgttgtctctggccctggcacagagcccacggggcccttc Alignment from CESAR gaAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTC-TATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTg aggctgaaggtaatgctagttgactaggaaaagatttctgtctcctccaggaAGCCCTCGAGTAGGCAAGATTGTGATGACGGCTGCGGCCAATCACCTGACCCCCATCTCCCTGGAACTGGGGGGTAAGAACCCCTGCTAT---GATGACAACTGTGACCCCCAGACAGTCACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGCCAGACCTGTGTGGCCCCTGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCTTGCAGAATTCCATCACTCGTTTCCTATGGAGATAATCCACAGACTTCCCCCAACCTGGGCAGGATAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGGGTGGCCATCAGTGGCCAGAGTGATGAGGGAGAGTGCTACATTggtacgcctcttgttgtctctggccctggcacagagcccacggggcccttc Alignment from Spaln_aa2Genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTC-TATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaaggtaatgctagttgactaggaaaagatttctgtctcctccagGAAGCCCTCGAGTAGGCAAGATTGTGATGACGGCTGCGGCCAATCACCTGACCCCCATCTCCCTGGAACTGGGGGGTAAGAACCCCTGCTATGAT---GACAACTGTGACCCCCAGACAGTCACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGCCAGACCTGTGTGGCCCCTGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCTTGCAGAATTCCATCACTCGTTTCcTATGGAGATAATCCACAGACTTCCCCCAACCTGGGCAGGATAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGGGTGGCCATCAGTGGCCAGAGTGATGAGGGAGAGTGCTACATTGgtacgcctcttgttgtctctggccctggcacagagcccacggggcccttc Alignment from Spaln_nt2Genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCG-TTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaaggtaatgctagttgactaggaaaagatttctgtctcctccagGAAGCCCTCGAGTAGGCAAGATTGTGATGACGGCTGCGGCCAATCACCTGACCCCCATCTCCCTGGAACTGGGGGGTAAGAACCCCTGCTAT---GATGACAACTGTGACCCCCAGACAGTCACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGCCAGACCTGTGTGGCCCCTGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCTTGCAGAATTCCATCACTCGTTTCCTATGGAGATAATCCACAGACTTCCCCCAACCTGGGCAGGATAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGGGTGGCCATCAGTGGCCAGAGTGATGAGGGAGAGTGCTACATTGgtacgcctcttgttgtctctggccctggcacagagcccacggggcccttc Alignment from Pairagon GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTT-CTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaaggtaatgctagttgactaggaaaagatttctgtctcctccagGAAGCCCTCGAGTAGGCAAGATTGTGATGACGGCTGCGGCCAATCACCTGACCCCCATCTCCCTGGAACTGGGGGGTAAGAACCCCTGCTAT---GATGACAACTGTGACCCCCAGACAGTCACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGCCAGACCTGTGTGGCCCCTGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCTTGCAGAATTCCATCACTCGTTTCCTATGGAGATAATCCACAGACTTCCCCCAACCTGGGCAGGATAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGGGTGGCCATCAGTGGCCAGAGTGATGAGGGAGAGTGCTACATTGgtacgcctcttgttgtctctggccctggcacagagcccacggggcccttc Alignment from Exonerate_protein2genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTC-TATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaaggtaatgctagttgactaggaaaagatttctgtctcctccagGAAGCCCTCGAGTAGGCAAGATTGTGATGACGGCTGCGGCCAATCACCTGACCCCCATCTCCCTGGAACTGGGGGGTAAGAACCCCTGCTAT---GATGACAACTGTGACCCCCAGACAGTCACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGCCAGACCTGTGTGGCCCCTGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCTTGCAGAATTCCATCACTCGTTTCCTATGGAGATAATCCACAGACTTCCCCCAACCTGGGCAGGATAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGGGTGGCCATCAGTGGCCAGAGTGATGAGGGAGAGTGCTACATTGgtacgcctcttgttgtctctggccctggcacagagcccacggggcccttc Alignment from Exonerate_coding2genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTC-TATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaaggtaatgctagttgactaggaaaagatttctgtctcctccagGAAGCCCTCGAGTAGGCAAGATTGTGATGACGGCTGCGGCCAATCACCTGACCCCCATCTCCCTGGAACTGGGGGGTAAGAACCCCTGCTAT---GATGACAACTGTGACCCCCAGACAGTCACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGCCAGACCTGTGTGGCCCCTGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCTTGCAGAATTCCATCACTCGTTTCCTATGGAGATAATCCACAGACTTCCCCCAACCTGGGCAGGATAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGGGTGGCCATCAGTGGCCAGAGTGATGAGGGAGAGTGCTACATTGgtacgcctcttgttgtctctggccctggcacagagcccacggggcccttc Alignment from GeneWise GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGT-TTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaaggtaatgctagttgactaggaaaagatttctgtctcctccagGAAGCCCTCGAGTAGGCAAGATTGTGATGACGGCTGCGGCCAATCACCTGACCCCCATCTCCCTGGAACTGGGGGGTAAGAACCCCTGCTAT---GATGACAACTGTGACCCCCAGACAGTCACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGCCAGACCTGTGTGGCCCCTGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCTTGCAGAATTCCATCACTCGTTTCCTATGGAGATAATCCACAGACTTCCCCCAACCTGGGCAGGATAATCAATCAGAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGGGTGGCCATCAGTGGCCAGAGTGATGAGGGAGAGTGCTACATTGgtacgcctcttgttgtctctggccctggcacagagcccacggggcccttc #### Ankrd13d_ID460_13 --> 2 - 0 Original Alignment gaAGCCCTTTTCCATGTGAGGTGGAC-CCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG tctctgatctgcctttgggctaaatgcacaacccctttccccttccccaggaAGCCTTTATCCATGTGAGGTAGACCTCCACTGTGTTTGAGGCACCTGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGTGAGCCCCTCCAGGATGAAGATGATGAGCTGCTGCAATTTGCCATCCAGCAGAGCCTGCTGGAGGCAGGCACAGAGGCAGAGCAGgtaagatgtgggatggtgggttatggcccccacagtctcaggcccaaggt Alignment from CESAR gaAGCCCTTTTCCATGTGAGGTGGAC-CCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG tctctgatctgcctttgggctaaatgcacaacccctttccccttccccaggaAGCCTTTATCCATGTGAGGTAGACCTCCACTGTGTTTGAGGCACCTGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGTGAGCCCCTCCAGGATGAAGATGATGAGCTGCTGCAATTTGCCATCCAGCAGAGCCTGCTGGAGGCAGGCACAGAGGCAGAGCAGgtaagatgtgggatggtgggttatggcccccacagtctcaggcccaaggt Alignment from Spaln_aa2Genome GAAGCCCTTTTCCATGTGAGGTGGAC-CCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG tctctgatctgcctttgggctaaatgcacaacccctttccccttccccagGAAGCCTTTATCCATGTGAGGTAGACcTCCACTGTGTTTGAGGCACCTGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGTGAGCCCCTCCAGGATGAAGATGATGAGCTGCTGCAATTTGCCATCCAGCAGAGCCTGCTGGAGGCAGGCACAGAGGCAGAGCAGgtaagatgtgggatggtgggttatggcccccacagtctcaggcccaaggt Alignment from Spaln_nt2Genome GAAGCCCTTTTCCATGTGAGGTGGACC-CCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG tctctgatctgcctttgggctaaatgcacaacccctttccccttccccagGAAGCCTTTATCCATGTGAGGTAGACCTCCACTGTGTTTGAGGCACCTGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGTGAGCCCCTCCAGGATGAAGATGATGAGCTGCTGCAATTTGCCATCCAGCAGAGCCTGCTGGAGGCAGGCACAGAGGCAGAGCAGgtaagatgtgggatggtgggttatggcccccacagtctcaggcccaaggt Alignment from Pairagon GAAGCCCTTTTCCATGTGAGGTGGACC-CCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG tctctgatctgcctttgggctaaatgcacaacccctttccccttccccagGAAGCCTTTATCCATGTGAGGTAGACCTCCACTGTGTTTGAGGCACCTGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGTGAGCCCCTCCAGGATGAAGATGATGAGCTGCTGCAATTTGCCATCCAGCAGAGCCTGCTGGAGGCAGGCACAGAGGCAGAGCAGgtaagatgtgggatggtgggttatggcccccacagtctcaggcccaaggt Alignment from Exonerate_protein2genome GAAGCCCTTTTCCATGTGAGGTGGAC-CCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG tctctgatctgcctttgggctaaatgcacaacccctttccccttccccagGAAGCCTTTATCCATGTGAGGTAGACCTCCACTGTGTTTGAGGCACCTGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGTGAGCCCCTCCAGGATGAAGATGATGAGCTGCTGCAATTTGCCATCCAGCAGAGCCTGCTGGAGGCAGGCACAGAGGCAGAGCAGgtaagatgtgggatggtgggttatggcccccacagtctcaggcccaaggt Alignment from Exonerate_coding2genome GAAGCCCTTTTCCATGTGAGGTGGAC-CCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG tctctgatctgcctttgggctaaatgcacaacccctttccccttccccagGAAGCCTTTATCCATGTGAGGTAGACCTCCACTGTGTTTGAGGCACCTGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGTGAGCCCCTCCAGGATGAAGATGATGAGCTGCTGCAATTTGCCATCCAGCAGAGCCTGCTGGAGGCAGGCACAGAGGCAGAGCAGgtaagatgtgggatggtgggttatggcccccacagtctcaggcccaaggt Alignment from GeneWise GAAGCCCTTTTCCATGTGAGGTGGAC-CCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG tctctgatctgcctttgggctaaatgcacaacccctttccccttccccagGAAGCCTTTATCCATGTGAGGTAGACCTCCACTGTGTTTGAGGCACCTGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGTGAGCCCCTCCAGGATGAAGATGATGAGCTGCTGCAATTTGCCATCCAGCAGAGCCTGCTGGAGGCAGGCACAGAGGCAGAGCAGgtaagatgtgggatggtgggttatggcccccacagtctcaggcccaaggt #### Ankrd2_ID8374_8 --> 0 - 0 Original Alignment GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGAC-ATGATGGCTAAGAACCTG tcactctacccacccattgacctcaaggttgtgatttgcacttgaattagGAAGGGGACAGTGCCCTACATGATGCTGTGAGGCTCAACCGCTACAAAATCATCAAACTGCTGCTCTTACATGGGGCAGACCATGATGGCTAAGAACCTGgtaagtctgttccttggggcttgatggttcggggtgcccttgcatggcgg Alignment from CESAR GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGAC-ATGATGGCTAAGAACCTG tcactctacccacccattgacctcaaggttgtgatttgcacttgaattagGAAGGGGACAGTGCCCTACATGATGCTGTGAGGCTCAACCGCTACAAAATCATCAAACTGCTGCTCTTACATGGGGCAGACCATGATGGCTAAGAACCTGgtaagtctgttccttggggcttgatggttcggggtgcccttgcatggcgg Alignment from Spaln_aa2Genome GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGAC-ATGATGGCTAAGAACCTG tcactctacccacccattgacctcaaggttgtgatttgcacttgaattagGAAGGGGACAGTGCCCTACATGATGCTGTGAGGCTCAACCGCTACAAAATCATCAAACTGCTGCTCTTACATGGGGCAGACcATGATGGCTAAGAACCTGgtaagtctgttccttggggcttgatggttcggggtgcccttgcatggcgg Alignment from Spaln_nt2Genome GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGA-CATGATGGCTAAGAACCTG tcactctacccacccattgacctcaaggttgtgatttgcacttgaattagGAAGGGGACAGTGCCCTACATGATGCTGTGAGGCTCAACCGCTACAAAATCATCAAACTGCTGCTCTTACATGGGGCAGACCATGATGGCTAAGAACCTGgtaagtctgttccttggggcttgatggttcggggtgcccttgcatggcgg Alignment from Pairagon GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGA-CATGATGGCTAAGAACCTG tcactctacccacccattgacctcaaggttgtgatttgcacttgaattagGAAGGGGACAGTGCCCTACATGATGCTGTGAGGCTCAACCGCTACAAAATCATCAAACTGCTGCTCTTACATGGGGCAGACCATGATGGCTAAGAACCTGgtaagtctgttccttggggcttgatggttcggggtgcccttgcatggcgg Alignment from Exonerate_protein2genome GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGAC-ATGATGGCTAAGAACCTG tcactctacccacccattgacctcaaggttgtgatttgcacttgaattagGAAGGGGACAGTGCCCTACATGATGCTGTGAGGCTCAACCGCTACAAAATCATCAAACTGCTGCTCTTACATGGGGCAGACCATGATGGCTAAGAACCTGgtaagtctgttccttggggcttgatggttcggggtgcccttgcatggcgg Alignment from Exonerate_coding2genome GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGAC-ATGATGGCTAAGAACCTG tcactctacccacccattgacctcaaggttgtgatttgcacttgaattagGAAGGGGACAGTGCCCTACATGATGCTGTGAGGCTCAACCGCTACAAAATCATCAAACTGCTGCTCTTACATGGGGCAGACCATGATGGCTAAGAACCTGgtaagtctgttccttggggcttgatggttcggggtgcccttgcatggcgg Alignment from GeneWise GAAGGGGACAGTGCCCTACATGATGCCGTGAGACTCAACCGCTACAAAATCATCAAACTGCTGCTCTTGCATGGGGCGGAC-ATGATGGCTAAGAACCTG tcactctacccacccattgacctcaaggttgtgatttgcacttgaattagGAAGGGGACAGTGCCCTACATGATGCTGTGAGGCTCAACCGCTACAAAATCATCAAACTGCTGCTCTTACATGGGGCAGACCATGATGGCTAAGAACCTGgtaagtctgttccttggggcttgatggttcggggtgcccttgcatggcgg #### Bbs1_ID718_16 --> 0 - 0 Original Alignment GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTC-AGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggcgtgtgggcttttaggggtggaaatgacggttactctttacagGTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCCAGTAGCAAGGGCATCTCAGACATGATCAAGgtaagaggctacttcaagggtaaatgggactctggggaagcagtagggtg Alignment from CESAR GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTC-AGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggcgtgtgggcttttaggggtggaaatgacggttactctttacagGTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCCAGTAGCAAGGGCATCTCAGACATGATCAAGgtaagaggctacttcaagggtaaatgggactctggggaagcagtagggtg Alignment from Spaln_aa2Genome GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTC-AGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggcgtgtgggcttttaggggtggaaatgacggttactctttacagGTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCcAGTAGCAAGGGCATCTCAGACATGATCAAGgtaagaggctacttcaagggtaaatgggactctggggaagcagtagggtg Alignment from Spaln_nt2Genome GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCT-CAGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggcgtgtgggcttttaggggtggaaatgacggttactctttacagGTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCCAGTAGCAAGGGCATCTCAGACATGATCAAGgtaagaggctacttcaagggtaaatgggactctggggaagcagtagggtg Alignment from Pairagon GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCT-CAGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggcgtgtgggcttttaggggtggaaatgacggttactctttacagGTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCCAGTAGCAAGGGCATCTCAGACATGATCAAGgtaagaggctacttcaagggtaaatgggactctggggaagcagtagggtg Alignment from Exonerate_protein2genome GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTC-AGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggcgtgtgggcttttaggggtggaaatgacggttactctttacagGTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCCAGTAGCAAGGGCATCTCAGACATGATCAAGgtaagaggctacttcaagggtaaatgggactctggggaagcagtagggtg Alignment from Exonerate_coding2genome GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCT---CAGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggcgtgtgggcttttaggggtggaaatgacggttactctttacagGTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTG--GAGAGTCTCCAGTAGCAAGGGCATCTCAGACATGATCAAGgtaagaggctacttcaagggtaaatgggactctggggaagcagtagggtg Alignment from GeneWise GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTC-AGTAGCAAGGGCATCTCAGACATGATCAAG gcctaggcgtgtgggcttttaggggtggaaatgacggttactctttacagGTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCCAGTAGCAAGGGCATCTCAGACATGATCAAGgtaagaggctacttcaagggtaaatgggactctggggaagcagtagggtg #### Bbs1_ID728_6 --> 1 - 2 Original Alignment gGAAAAGGCAGAC-GTGCCTTTGTCTGTGCAGTCACTCag tctcctaagggttcttgtgaaagctgctaaccctatctgcttgatttcaggGAAAAGGCAGATCGTACCTTTGTCTGTGCAGTCACTTaggtatgcgtccattgcagagagggtgggggggatgtccatagaggtagcta Alignment from CESAR gGAAAAGGCAGAC-GTGCCTTTGTCTGTGCAGTCACTCag tctcctaagggttcttgtgaaagctgctaaccctatctgcttgatttcaggGAAAAGGCAGATCGTACCTTTGTCTGTGCAGTCACTTaggtatgcgtccattgcagagagggtgggggggatgtccatagaggtagcta Alignment from Spaln_aa2Genome GGAAAAGGCAGAC-GTGCCTTTGTCTGTGCAGTCACTCAG tctcctaagggttcttgtgaaagctgctaaccctatctgcttgatttcagGGAAAAGGCAGATcGTACCTTTGTCTGTGCAGTCACTTAGgtatgcgtccattgcagagagggtgggggggatgtccatagaggtagcta Alignment from Spaln_nt2Genome GGAAAAGGCAGA-CGTGCCTTTGTCTGTGCAGTCACTCAG tctcctaagggttcttgtgaaagctgctaaccctatctgcttgatttcagGGAAAAGGCAGATCGTACCTTTGTCTGTGCAGTCACTTAGgtatgcgtccattgcagagagggtgggggggatgtccatagaggtagcta Alignment from Pairagon GGAAAAGGCAGA-CGTGCCTTTGTCTGTGCAGTCACTCAG tctcctaagggttcttgtgaaagctgctaaccctatctgcttgatttcagGGAAAAGGCAGATCGTACCTTTGTCTGTGCAGTCACTTAGgtatgcgtccattgcagagagggtgggggggatgtccatagaggtagcta Alignment from Exonerate_protein2genome GGAAAAGGCAGAC-GTGCCTTTGTCTGTGCAGTCACTCAG tctcctaagggttcttgtgaaagctgctaaccctatctgcttgatttcagGGAAAAGGCAGATCGTACCTTTGTCTGTGCAGTCACTTAGgtatgcgtccattgcagagagggtgggggggatgtccatagaggtagcta Alignment from Exonerate_coding2genome GGAAAAGGCAGAC-GTGCCTTTGTCTGTGCAGTCACTCAG tctcctaagggttcttgtgaaagctgctaaccctatctgcttgatttcagGGAAAAGGCAGATCGTACCTTTGTCTGTGCAGTCACTTAGgtatgcgtccattgcagagagggtgggggggatgtccatagaggtagcta Alignment from GeneWise GGAAAAGGC tctcctaagggttcttgtgaaagctgctaaccctatctgcttgatttcagggaaaaggcagatcgtacctttgtctgtgcagtcacttaggtatgcgtccattgcagagagggtgggggggatgtccatagAGGTAGCTA #### C030046E11Rik_ID6307_21 --> 0 - 2 Original Alignment GAGCCCAGTTCAAGTGGT-GGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAag cagcctcaaagcatctttgattagaactcatcccaggacctctatttcagGAGCCCAGTTCAAGTGGGCGGGTTTGAGTTCTTCAGGAATCGGAGTATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAAAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAaggtattggaatagagaggagttattgctccagagctttcatccacttttca Alignment from CESAR GAGCCCAGTTCAAGT-GGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAag cagcctcaaagcatctttgattagaactcatcccaggacctctatttcagGAGCCCAGTTCAAGTGGGCGGGTTTGAGTTCTTCAGGAATCGGAGTATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAAAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAaggtattggaatagagaggagttattgctccagagctttcatccacttttca Alignment from Spaln_aa2Genome GAGCCCAGTTCAAGTGGT-GGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG cagcctcaaagcatctttgattagaactcatcccaggacctctatttcagGAGCCCAGTTCAAGTGGGcGGGTTTGAGTTCTTCAGGAATCGGAGTATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAAAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAGgtattggaatagagaggagttattgctccagagctttcatccacttttca Alignment from Spaln_nt2Genome GAGCCCAGTTCAAGT-GGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG cagcctcaaagcatctttgattagaactcatcccaggacctctatttcagGAGCCCAGTTCAAGTGGGCGGGTTTGAGTTCTTCAGGAATCGGAGTATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAAAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAGgtattggaatagagaggagttattgctccagagctttcatccacttttca Alignment from Pairagon GAGCCCAGTTCAAGT-GGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG cagcctcaaagcatctttgattagaactcatcccaggacctctatttcagGAGCCCAGTTCAAGTGGGCGGGTTTGAGTTCTTCAGGAATCGGAGTATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAAAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAGgtattggaatagagaggagttattgctccagagctttcatccacttttca Alignment from Exonerate_protein2genome GAGCCCAGTTCAAGT-GGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG cagcctcaaagcatctttgattagaactcatcccaggacctctatttcagGAGCCCAGTTCAAGTGGGCGGGTTTGAGTTCTTCAGGAATCGGAGTATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAAAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAGgtattggaatagagaggagttattgctccagagctttcatccacttttca Alignment from Exonerate_coding2genome GAGCCCAGTTCAAGT-GGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG cagcctcaaagcatctttgattagaactcatcccaggacctctatttcagGAGCCCAGTTCAAGTGGGCGGGTTTGAGTTCTTCAGGAATCGGAGTATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAAAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAGgtattggaatagagaggagttattgctccagagctttcatccacttttca Alignment from GeneWise ---------------GAGCCCAGTTCAAGTGGTGGGTTTGAGTTCTTCAGGAATCGGAGCATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAGAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAG cagcctcaaagcatctttgattagaactcatcccagGACCTCTATTTCAGGAGCCCAGTTCAAGTGGGCGGGTTTGAGTTCTTCAGGAATCGGAGTATCAGTTTATCCCAGTCAGCTGAGAATGTTCCTCCTGGTAAATTCGGCTTACAAAAAACACTAAGTATGCCAACTGGTCCTTCTGGGAAAAGgtattggaatagagaggagttattgctccagagctttcatccacttttca #### C030046E11Rik_ID6311_25 --> 1 - 2 Original Alignment cTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTT-GGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACtg gtaagctgctattgttcatacagatcctcttttttctacttcacttacagcTATTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTGGCCTGATTCTCAGAGAAGCCTCAGTGGTCAGTCAGCTCCTTCGGGATTACTCAGTCTCCTGGGATGGATGGAGAGATGTTACAAAACATAAAATCTGGACTGCAAGCAGTGGATCGCTGGGACTCAACAGACtggcaagtgaatgctacgttctataataggcctggtatcccttggcaaatga Alignment from CESAR cTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTT-GGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACtg gtaagctgctattgttcatacagatcctcttttttctacttcacttacagcTATTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTGGCCTGATTCTCAGAGAAGCCTCAGTGGTCAGTCAGCTCCTTCGGGATTACTCAGTCTCCTGGGATGGATGGAGAGATGTTACAAAACATAAAATCTGGACTGCAAGCAGTGGATCGCTGGGACTCAACAGACtggcaagtgaatgctacgttctataataggcctggtatcccttggcaaatga Alignment from Spaln_aa2Genome CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTT-GGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG gtaagctgctattgttcatacagatcctcttttttctacttcacttacagCTATTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTGGCCTGATTCTCAGAGAAGCCTCAGTGGTCAGTCAGCTCCTTcGGGATTACTCAGTCTCCTGGGATGGATGGAGAGATGTTACAAAACATAAAATCTGGACTGCAAGCAGTGGATCGCTGGGACTCAACAGACTGgcaagtgaatgctacgttctataataggcctggtatcccttggcaaatga Alignment from Spaln_nt2Genome CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTT-GGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG gtaagctgctattgttcatacagatcctcttttttctacttcacttacagCTATTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTGGCCTGATTCTCAGAGAAGCCTCAGTGGTCAGTCAGCTCCTTCGGGATTACTCAGTCTCCTGGGATGGATGGAGAGATGTTACAAAACATAAAATCTGGACTGCAAGCAGTGGATCGCTGGGACTCAACAGACTGgcaagtgaatgctacgttctataataggcctggtatcccttggcaaatga Alignment from Pairagon CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTT-GGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG gtaagctgctattgttcatacagatcctcttttttctacttcacttacagCTATTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTGGCCTGATTCTCAGAGAAGCCTCAGTGGTCAGTCAGCTCCTTCGGGATTACTCAGTCTCCTGGGATGGATGGAGAGATGTTACAAAACATAAAATCTGGACTGCAAGCAGTGGATCGCTGGGACTCAACAGACTGgcaagtgaatgctacgttctataataggcctggtatcccttggcaaatga Alignment from Exonerate_protein2genome CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTT-GGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG gtaagctgctattgttcatacagatcctcttttttctacttcacttacagCTATTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTGGCCTGATTCTCAGAGAAGCCTCAGTGGTCAGTCAGCTCCTTCGGGATTACTCAGTCTCCTGGGATGGATGGAGAGATGTTACAAAACATAAAATCTGGACTGCAAGCAGTGGATCGCTGGGACTCAACAGACTGgcaagtgaatgctacgttctataataggcctggtatcccttggcaaatga Alignment from Exonerate_coding2genome CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTTCTT-GGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGACTG gtaagctgctattgttcatacagatcctcttttttctacttcacttacagCTATTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTGGCCTGATTCTCAGAGAAGCCTCAGTGGTCAGTCAGCTCCTTCGGGATTACTCAGTCTCCTGGGATGGATGGAGAGATGTTACAAAACATAAAATCTGGACTGCAAGCAGTGGATCGCTGGGACTCAACAGACTGgcaagtgaatgctacgttctataataggcctggtatcccttggcaaatga Alignment from GeneWise CTATTTGCTGCACATTTTCATGGAGGCGGGATGTCTGGACTGGTGTGTTGTCATCGGCCTGATTCTCAGAGAATCCTCAGTGGTCAGTCAGCTT-CTTGGGATTGCTCAGTCTTCCGAGATGGATGGAGAGATGTTACAGAACATAAAATCAGGGCTGCAAGCAGTGGACCGCTGGGCCTCTACAGAC---------------TG gtaagctgctattgttcatacagatcctcttttttctacttcacttacagCTATTTGCTGCACATTTACATGGAGGCAGGATGTCTGGACTGGTGTGTTGTCATTGGCCTGATTCTCAGAGAAGCCTCAGTGGTCAGTCAGCTCCTTCGGGATTACTCAGTCTCCTGGGATGGATGGAGAGATGTTACAAAACATAAAATCTGGACTGCAAGCAGTGGATCGCTGGGACTCAACAGACTGGCAAGTGAATGCTACgttctataataggcctggtatcccttggcaaatga #### Cabp2_ID290_5 --> 2 - 0 Original Alignment gtGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGAC-GCCTTCCGGGAG atgtaagtcagacactaacctaggctctaacagaatatatttaattgtaggtGGTGGGAAGGTCGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTACTAGTAGAGACGGCAGACATGATTGGTGAGAGGGAGCTTCGAGATCGCTTTCAGGGAGgtgagccttgggtgatgagtggcagtggttggtgagattgtggctcagca Alignment from CESAR gtGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGAC-GCCTTCCGGGAG atgtaagtcagacactaacctaggctctaacagaatatatttaattgtaggtGGTGGGAAGGTCGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTACTAGTAGAGACGGCAGACATGATTGGTGAGAGGGAGCTTCGAGATCGCTTTCAGGGAGgtgagccttgggtgatgagtggcagtggttggtgagattgtggctcagca Alignment from Spaln_aa2Genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG------------ atgtaagtcagacactaacctaggctctaacagaatatatttaattgtagGTGGTGGGAAGGTCGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTACTAGTAGAGACGGCAGACATGATTGGTGAGAGGGAGCTTCGAGATCGCTTTCAGGGAGGTGAGCCTTGGgtgatgagtggcagtggttggtgagattgtggctcagca Alignment from Spaln_nt2Genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGA-CGCCTTCCGGGAG atgtaagtcagacactaacctaggctctaacagaatatatttaattgtagGTGGTGGGAAGGTCGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTACTAGTAGAGACGGCAGACATGATTGGTGAGAGGGAGCTTCGAGATCGCTTTCAGGGAGgtgagccttgggtgatgagtggcagtggttggtgagattgtggctcagca Alignment from Pairagon GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGA-CGCCTTCCGGGAG atgtaagtcagacactaacctaggctctaacagaatatatttaattgtagGTGGTGGGAAGGTCGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTACTAGTAGAGACGGCAGACATGATTGGTGAGAGGGAGCTTCGAGATCGCTTTCAGGGAGgtgagccttgggtgatgagtggcagtggttggtgagattgtggctcagca Alignment from Exonerate_protein2genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGAC-GCCTTCCGGGAG atgtaagtcagacactaacctaggctctaacagaatatatttaattgtagGTGGTGGGAAGGTCGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTACTAGTAGAGACGGCAGACATGATTGGTGAGAGGGAGCTTCGAGATCGCTTTCAGGGAGgtgagccttgggtgatgagtggcagtggttggtgagattgtggctcagca Alignment from Exonerate_coding2genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGAC-GCCTTCCGGGAG atgtaagtcagacactaacctaggctctaacagaatatatttaattgtagGTGGTGGGAAGGTCGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTACTAGTAGAGACGGCAGACATGATTGGTGAGAGGGAGCTTCGAGATCGCTTTCAGGGAGgtgagccttgggtgatgagtggcagtggttggtgagattgtggctcagca Alignment from GeneWise GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG- atgtaagtcagacactaacctaggctctaacagaatatatttaattgtagGTGGTGGGAAGGTCGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTACTAGTAGAGACGGCAGACATGATTGGTGAGAGGGAGCTTCGAGATCGCTTTCAGGGAGgtgagccttgggtgatgagtggcagtggttggtgagattgtggctcagca #### Cabp2_ID291_6 --> 0 - 1 Original Alignment TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTG-CTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAg gagtggatccagggctcagtcagtgatcgtctcctgtgctgggcactcagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTCCAGGCAGCGCTCAAAGCTCTGCCTGGGTGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAggtaagttttcccctacttatttccacatggcagcatttctgaatagtgtg Alignment from CESAR TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTG-CTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAg gagtggatccagggctcagtcagtgatcgtctcctgtgctgggcactcagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTCCAGGCAGCGCTCAAAGCTCTGCCTGGGTGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAggtaagttttcccctacttatttccacatggcagcatttctgaatagtgtg Alignment from Spaln_aa2Genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTG-GGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gagtggatccagggctcagtcagtgatcgtctcctgtgctgggcactcagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTCCAGGCAGCGCTCAAAGCTCTGCCTgGGTGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAGgtaagttttcccctacttatttccacatggcagcatttctgaatagtgtg Alignment from Spaln_nt2Genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTG-CTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gagtggatccagggctcagtcagtgatcgtctcctgtgctgggcactcagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTCCAGGCAGCGCTCAAAGCTCTGCCTGGGTGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAGgtaagttttcccctacttatttccacatggcagcatttctgaatagtgtg Alignment from Pairagon TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTG-CTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gagtggatccagggctcagtcagtgatcgtctcctgtgctgggcactcagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTCCAGGCAGCGCTCAAAGCTCTGCCTGGGTGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAGgtaagttttcccctacttatttccacatggcagcatttctgaatagtgtg Alignment from Exonerate_protein2genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTG-CTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gagtggatccagggctcagtcagtgatcgtctcctgtgctgggcactcagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTCCAGGCAGCGCTCAAAGCTCTGCCTGGGTGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAGgtaagttttcccctacttatttccacatggcagcatttctgaatagtgtg Alignment from Exonerate_coding2genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTG-CTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAA gagtggatccagggctcagtcagtgatcgtctcctgtgctgggcactcagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTCCAGGCAGCGCTCAAAGCTCTGCCTGGGTGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAggtaagttttcccctacttatttccacatggcagcatttctgaatagtgtg Alignment from GeneWise TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTG-CTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAA---GAATTTGTTCGGATGATGTCTCGG gagtggatccagggctcagtcagtgatcgtctcctgtgctgggcactcagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTCCAGGCAGCGCTCAAAGCTCTGCCTGGGTGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAGGTAAGTTTTCCCCTACTTATTTCCACatggcagcatttctgaatagtgtg #### Capn1_ID1356_20 --> 2 - 0 Original Alignment ggTTTTTCAAACTTCTGGACACAGACCTGGATGGTGTTGTGACCTTT-GATCTATTTAAG tcaactgtctggatgtcctcccagattttcacgctctgttttggtcctagggTTTTCCAAACTTCTGGACACAGGCCTGGATGGTGTTGTGACCTTTCGATCTCTTTAAGgtgagataatcccccctactaacctaacccagccaggacgggcatccaca Alignment from CESAR ggTTTTTCAAACTTCTGGACACAGACCTGGATGGTGTTGTGACCTTT-GATCTATTTAAG tcaactgtctggatgtcctcccagattttcacgctctgttttggtcctagggTTTTCCAAACTTCTGGACACAGGCCTGGATGGTGTTGTGACCTTTCGATCTCTTTAAGgtgagataatcccccctactaacctaacccagccaggacgggcatccaca Alignment from Spaln_aa2Genome GGTTTTTCAAACTTCTGGACACAGACCTGGATGGTGTTGTGACCTTT-GATCTATTTAAG tcaactgtctggatgtcctcccagattttcacgctctgttttggtcctagGGTTTTCCAAACTTCTGGACACAGGCCTGGATGGTGTTGTGACCTTTcGATCTCTTTAAGgtgagataatcccccctactaacctaacccagccaggacgggcatccaca Alignment from Spaln_nt2Genome GGTTTTTCAAACTTCTGGACACAGACCTGGATGGTGTTGTGACCTTT-GATCTATTTAAG tcaactgtctggatgtcctcccagattttcacgctctgttttggtcctagGGTTTTCCAAACTTCTGGACACAGGCCTGGATGGTGTTGTGACCTTTCGATCTCTTTAAGgtgagataatcccccctactaacctaacccagccaggacgggcatccaca Alignment from Pairagon GGTTTTTCAAACTTCTGGACACAGACCTGGATGGTGTTGTGACCTTT-GATCTATTTAAG tcaactgtctggatgtcctcccagattttcacgctctgttttggtcctagGGTTTTCCAAACTTCTGGACACAGGCCTGGATGGTGTTGTGACCTTTCGATCTCTTTAAGgtgagataatcccccctactaacctaacccagccaggacgggcatccaca Alignment from Exonerate_protein2genome GGTTTTTCAAACTTCTGGACACAGACCTGGATGGTGTTGTGACC-TTTGATCTATTTAAG tcaactgtctggatgtcctcccagattttcacgctctgttttggtcctagGGTTTTCCAAACTTCTGGACACAGGCCTGGATGGTGTTGTGACCTTTCGATCTCTTTAAGgtgagataatcccccctactaacctaacccagccaggacgggcatccaca Alignment from Exonerate_coding2genome GGTTTTTCAAACTTCTGGACACAGACCTGGATGGTGTTGTGACCTTT tcaactgtctggatgtcctcccagattttcacgctctgttttggtcctagGGTTTTCCAAACTTCTGGACACAGGCCTGGATGGTGTTGTGACCTTTcgatctctttaaggtgagataatcccccctactaacctaacccagccaggacgggcatccaca Alignment from GeneWise tcaactgtctggatgtcctcccagattttcacgctctgttttggtcctagggttttccaaacttctggacacaggcctggatggtgttgtgacctttcgatctctttaaggtgagataatcccccctactaacctaacccagccaggacgggcatccaca #### Capn1_ID1376_2 --> 0 - 1 Original Alignment GAACTGATGTCAAACCCCCAGTTCATCGTG-GATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGg ttctggggcacctcaaataaggtcccagccacctactgtgttttctgtagGAACTGATGTCAAACCCCCAGTTCATCGTGCGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGggtgaggccccaggggtggggtgctgggtgtttgctctatgttctctgttc Alignment from CESAR GAACTGATGTCAAACCCCCAGTTCATCGTG-GATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGg ttctggggcacctcaaataaggtcccagccacctactgtgttttctgtagGAACTGATGTCAAACCCCCAGTTCATCGTGCGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGggtgaggccccaggggtggggtgctgggtgtttgctctatgttctctgttc Alignment from Spaln_aa2Genome GAACTGATGTCAAACCCCCAGTTCATCGTG-GATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG ttctggggcacctcaaataaggtcccagccacctactgtgttttctgtagGAACTGATGTCAAACCCCCAGTTCATCGTGcGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGGgtgaggccccaggggtggggtgctgggtgtttgctctatgttctctgttc Alignment from Spaln_nt2Genome GAACTGATGTCAAACCCCCAGTTCATCGTG-GATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG ttctggggcacctcaaataaggtcccagccacctactgtgttttctgtagGAACTGATGTCAAACCCCCAGTTCATCGTGCGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGGgtgaggccccaggggtggggtgctgggtgtttgctctatgttctctgttc Alignment from Pairagon GAACTGATGTCAAACCCCCAGTTCATCGTG-GATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG ttctggggcacctcaaataaggtcccagccacctactgtgttttctgtagGAACTGATGTCAAACCCCCAGTTCATCGTGCGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGGgtgaggccccaggggtggggtgctgggtgtttgctctatgttctctgttc Alignment from Exonerate_protein2genome GAACTGATGTCAAACCCCCAGTTCATCGTG-GATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG ttctggggcacctcaaataaggtcccagccacctactgtgttttctgtagGAACTGATGTCAAACCCCCAGTTCATCGTGCGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGGgtgaggccccaggggtggggtgctgggtgtttgctctatgttctctgttc Alignment from Exonerate_coding2genome GAACTGATGTCAAACCCCCAGTTCATCGTG-GATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG ttctggggcacctcaaataaggtcccagccacctactgtgttttctgtagGAACTGATGTCAAACCCCCAGTTCATCGTGCGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGGgtgaggccccaggggtggggtgctgggtgtttgctctatgttctctgttc Alignment from GeneWise GAACTGATGTCAAACCCCCAGTTCATC-GTGGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGG ttctggggcacctcaaataaggtcccagccacctactgtgttttctgtagGAACTGATGTCAAACCCCCAGTTCATCGTGCGATGGAGCCACCCGGACAGACATCTGCCAGGGAGCACTGGgtgaggccccaggggtggggtgctgggtgtttgctctatgttctctgttc #### Carns1_ID388_4 --> 2 - 0 Original Alignment gaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTG-CTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG ggcacaaatcagcatttgctggccagaccctggcatcctgtctctctcaggaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCACGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGTTGGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCAGGACTGCCTTCGGGGAGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACACTCTGAGGCCTTGGGTGATGCTTCACAGgtgagtgcaggcctgggtacccatgggagggaaccccagattgtccttac Alignment from CESAR gaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTG-CTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG ggcacaaatcagcatttgctggccagaccctggcatcctgtctctctcaggaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCACGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGTTGGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCAGGACTGCCTTCGGGGAGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACACTCTGAGGCCTTGGGTGATGCTTCACAGgtgagtgcaggcctgggtacccatgggagggaaccccagattgtccttac Alignment from Spaln_aa2Genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTG-CTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG ggcacaaatcagcatttgctggccagaccctggcatcctgtctctctcagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCACGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGTTGGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCAGGACTGcCTTCGGGGAGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACACTCTGAGGCCTTGGGTGATGCTTCACAGgtgagtgcaggcctgggtacccatgggagggaaccccagattgtccttac Alignment from Spaln_nt2Genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTG-CTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG ggcacaaatcagcatttgctggccagaccctggcatcctgtctctctcagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCACGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGTTGGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCAGGACTGCCTTCGGGGAGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACACTCTGAGGCCTTGGGTGATGCTTCACAGgtgagtgcaggcctgggtacccatgggagggaaccccagattgtccttac Alignment from Pairagon GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTG-CTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG ggcacaaatcagcatttgctggccagaccctggcatcctgtctctctcagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCACGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGTTGGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCAGGACTGCCTTCGGGGAGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACACTCTGAGGCCTTGGGTGATGCTTCACAGgtgagtgcaggcctgggtacccatgggagggaaccccagattgtccttac Alignment from Exonerate_protein2genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTG-CTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG ggcacaaatcagcatttgctggccagaccctggcatcctgtctctctcagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCACGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGTTGGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCAGGACTGCCTTCGGGGAGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACACTCTGAGGCCTTGGGTGATGCTTCACAGgtgagtgcaggcctgggtacccatgggagggaaccccagattgtccttac Alignment from Exonerate_coding2genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTG-CTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG ggcacaaatcagcatttgctggccagaccctggcatcctgtctctctcagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCACGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGTTGGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCAGGACTGCCTTCGGGGAGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACACTCTGAGGCCTTGGGTGATGCTTCACAGgtgagtgcaggcctgggtacccatgggagggaaccccagattgtccttac Alignment from GeneWise GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTG-CTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG ggcacaaatcagcatttgctggccagaccctggcatcctgtctctctcagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGGCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCTTGACATTCCTGGATGACTTTGTTCCCCCTCGGCACGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGTTGGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCAGGACTGCCTTCGGGGAGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACACTCTGAGGCCTTGGGTGATGCTTCACAGgtgagtgcaggcctgggtacccatgggagggaaccccagattgtccttac #### Carns1_ID389_3 --> 2 - 1 Original Alignment gcTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTG-GGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTg gacccatggacaagacccttgattaatgttgtctatttgttcttgcctaggcTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTTCGGTTCTCTCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTTCAAAGCCCTggtaggtgtgtgctctaataccccaccttctcctacaaaaggggaagccct Alignment from CESAR gcTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTG-GGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTg gacccatggacaagacccttgattaatgttgtctatttgttcttgcctaggcTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTTCGGTTCTCTCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTTCAAAGCCCTggtaggtgtgtgctctaataccccaccttctcctacaaaaggggaagccct Alignment from Spaln_aa2Genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTG-GGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG gacccatggacaagacccttgattaatgttgtctatttgttcttgcctagGCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTTcGGTTCTCTCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTTCAAAGCCCTGgtaggtgtgtgctctaataccccaccttctcctacaaaaggggaagccct Alignment from Spaln_nt2Genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTG-GGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG gacccatggacaagacccttgattaatgttgtctatttgttcttgcctagGCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTTCGGTTCTCTCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTTCAAAGCCCTGgtaggtgtgtgctctaataccccaccttctcctacaaaaggggaagccct Alignment from Pairagon GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTC-TGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG gacccatggacaagacccttgattaatgttgtctatttgttcttgcctagGCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTTCGGTTCTCTCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTTCAAAGCCCTGgtaggtgtgtgctctaataccccaccttctcctacaaaaggggaagccct Alignment from Exonerate_protein2genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTG-GGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG gacccatggacaagacccttgattaatgttgtctatttgttcttgcctagGCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTTCGGTTCTCTCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTTCAAAGCCCTGgtaggtgtgtgctctaataccccaccttctcctacaaaaggggaagccct Alignment from Exonerate_coding2genome GCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTG-GGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG gacccatggacaagacccttgattaatgttgtctatttgttcttgcctagGCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTTCGGTTCTCTCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTTCAAAGCCCTGgtaggtgtgtgctctaataccccaccttctcctacaaaaggggaagccct Alignment from GeneWise GCTGCCCTGGGGCAGAGGTGACCTTGTGCATT-CTGGGTTCTCCCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTCCAGAGCCCTG gacccatggacaagacccttgattaatgttgtctatttgttcttgcctagGCTGCCCTGGGGCAGAGGTGACCTTGTGCATTCTTCGGTTCTCTCAGCACCTTCCTATCTCTGTTGCTGGAGGGTGGGGTTCAAAGCCCTGgtaggtgtgtgctctaataccccaccttctcctacaaaaggggaagccct #### Catsper1_ID929_6 --> 2 - 1 Original Alignment tcCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAG-CGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAg gaaatctaatctgattacagtgatggtattcttcctccttattttaatagtcCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAggtaaaatgagctcaggatccagggcctgagtggcagacactaataatgag Alignment from CESAR tcCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAG-CGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAg gaaatctaatctgattacagtgatggtattcttcctccttattttaatagtcCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAggtaaaatgagctcaggatccagggcctgagtggcagacactaataatgag Alignment from Spaln_aa2Genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAG-CGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctgattacagtgatggtattcttcctccttattttaatagTCCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGcCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtaaaatgagctcaggatccagggcctgagtggcagacactaataatgag Alignment from Spaln_nt2Genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAG-CGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctgattacagtgatggtattcttcctccttattttaatagTCCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtaaaatgagctcaggatccagggcctgagtggcagacactaataatgag Alignment from Pairagon TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAG-CGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctgattacagtgatggtattcttcctccttattttaatagTCCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtaaaatgagctcaggatccagggcctgagtggcagacactaataatgag Alignment from Exonerate_protein2genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAG-CGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctgattacagtgatggtattcttcctccttattttaatagTCCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtaaaatgagctcaggatccagggcctgagtggcagacactaataatgag Alignment from Exonerate_coding2genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAG-CGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctgattacagtgatggtattcttcctccttattttaatagTCCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtaaaatgagctcaggatccagggcctgagtggcagacactaataatgag Alignment from GeneWise TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCC-AAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctgattacagtgatggtattcttcctccttattttaatagTCCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtaaaatgagctcaggatccagggcctgagtggcagacactaataatgag #### Catsper1_ID931_8 --> 1 - 0 Original Alignment cCTGGTGATTGCTGTCCTG-GTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggccccttccttggtttctcatttaggggctgtttgcttactgtttttagcCTGGTGATTGCTGTCCTACGTAGATAACTTCCTGATGGCGCTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAGgtgagatgcacattgggtgatgactgtgagggttggaagaacatcaaccc Alignment from CESAR cCTGGTGATTGCTGTCCTG-GTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggccccttccttggtttctcatttaggggctgtttgcttactgtttttagcCTGGTGATTGCTGTCCTACGTAGATAACTTCCTGATGGCGCTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAGgtgagatgcacattgggtgatgactgtgagggttggaagaacatcaaccc Alignment from Spaln_aa2Genome CCTGGTGATTGCTGTCCTG-GTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggccccttccttggtttctcatttaggggctgtttgcttactgtttttagCCTGGTGATTGCTGTCCTAcGTAGATAACTTCCTGATGGCGCTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAGgtgagatgcacattgggtgatgactgtgagggttggaagaacatcaaccc Alignment from Spaln_nt2Genome CCTGGTGATTGCTGTCCTG-GTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggccccttccttggtttctcatttaggggctgtttgcttactgtttttagCCTGGTGATTGCTGTCCTACGTAGATAACTTCCTGATGGCGCTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAGgtgagatgcacattgggtgatgactgtgagggttggaagaacatcaaccc Alignment from Pairagon CCTGGTGATTGCTGTCCTG-GTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggccccttccttggtttctcatttaggggctgtttgcttactgtttttagCCTGGTGATTGCTGTCCTACGTAGATAACTTCCTGATGGCGCTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAGgtgagatgcacattgggtgatgactgtgagggttggaagaacatcaaccc Alignment from Exonerate_protein2genome CCTGGTGATTGCTGTCCTG-GTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggccccttccttggtttctcatttaggggctgtttgcttactgtttttagCCTGGTGATTGCTGTCCTACGTAGATAACTTCCTGATGGCGCTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAGgtgagatgcacattgggtgatgactgtgagggttggaagaacatcaaccc Alignment from Exonerate_coding2genome CCTGGTGATTGCTGTCCTG-GTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggccccttccttggtttctcatttaggggctgtttgcttactgtttttagCCTGGTGATTGCTGTCCTACGTAGATAACTTCCTGATGGCGCTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAGgtgagatgcacattgggtgatgactgtgagggttggaagaacatcaaccc Alignment from GeneWise CCTGGTGATTGCTGTCCTG-GTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggccccttccttggtttctcatttaggggctgtttgcttactgtttttagCCTGGTGATTGCTGTCCTACGTAGATAACTTCCTGATGGCGCTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAGgtgagatgcacattgggtgatgactgtgagggttggaagaacatcaaccc #### Ccdc88b_ID1826_23 --> 1 - 2 Original Alignment GAGTACct gGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATG-GACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCaa GAGTATctgtaagaatgctcagggtcagctgaatgcattgtcttcctcaggGACCAGCTTAATGCCTTGCACCAGGAGAAACAGAAGCTGGTTGAG---ATCATGCGACCAGTACCGTGTACTAGAACCTGGGCCCCTACCCCGTACTaagtaagtcagtaccttgcagaaccaggctcctgttagcctttgccctgtcc Alignment from CESAR GAGTACct gGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATG-GACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCaa GAGTATctgtgagtatgctcagggtcagctgaatgcattgtcttcctcaggGACCAGCTTAATGCCTTGCACCAGGAGAAACAGAAGCTGGTTGAG---ATCATGCGACCAGTACCGTGTACTAGAACCTGGGCCCCTACCCCGTACTaagtaagtcagtaccttgcagaaccaggctcctgttagcctttgccctgtcc Alignment from Spaln_aa2Genome GAGTACCT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATG-GACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA GAGTATCTgtaagaatgctcagggtcagctgaatgcattgtcttcctcagGGACCAGCTTAATGCCTTGCACCAGGAGAAACAGAAGCTGGTTGAG---ATCATGcGACCAGTACCGTGTACTAGAACCTGGGCCCCTACCCCGTACTAAgtaagtcagtaccttgcagaaccaggctcctgttagcctttgccctgtcc Alignment from Spaln_nt2Genome GAGTACCT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATG-GACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA GAGTATCTgtaagaatgctcagggtcagctgaatgcattgtcttcctcagGGACCAGCTTAATGCCTTGCACCAGGAGAAACAGAAGCTGGTTGAG---ATCATGCGACCAGTACCGTGTACTAGAACCTGGGCCCCTACCCCGTACTAAgtaagtcagtaccttgcagaaccaggctcctgttagcctttgccctgtcc Alignment from Pairagon GAGTACCT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATG-GACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA GAGTATCTgtaagaatgctcagggtcagctgaatgcattgtcttcctcagGGACCAGCTTAATGCCTTGCACCAGGAGAAACAGAAGCTGGTTGAG---ATCATGCGACCAGTACCGTGTACTAGAACCTGGGCCCCTACCCCGTACTAAgtaagtcagtaccttgcagaaccaggctcctgttagcctttgccctgtcc Alignment from Exonerate_protein2genome GAGTACCT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATG-GACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA GAGTATCTgtaagaatgctcagggtcagctgaatgcattgtcttcctcagGGACCAGCTTAATGCCTTGCACCAGGAGAAACAGAAGCTGGTTGAG---ATCATGCGACCAGTACCGTGTACTAGAACCTGGGCCCCTACCCCGTACTAAgtaagtcagtaccttgcagaaccaggctcctgttagcctttgccctgtcc Alignment from Exonerate_coding2genome GAGTACCT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATG-GACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA GAGTATCTgtaagaatgctcagggtcagctgaatgcattgtcttcctcagGGACCAGCTTAATGCCTTGCACCAGGAGAAACAGAAGCTGGTTGAG---ATCATGCGACCAGTACCGTGTACTAGAACCTGGGCCCCTACCCCGTACTAAgtaagtcagtaccttgcagaaccaggctcctgttagcctttgccctgtcc Alignment from GeneWise GAGTACCT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA GAGTATCTgtaagaatgctcagggtcagctgaatgcattgtcttcctcagGGACCAGCTTAATGCCTTGCACCAGGAGAAACAGAAGCTGGTTGAGATCATGC--GACCAGTACCGTGTACTAGAACCTGGGCCCCTACCCCGTACTAAgtaagtcagtaccttgcagaaccaggctcctgttagcctttgccctgtcc #### Ccdc88b_ID1832_17 --> 0 - 0 Original Alignment CTGCGCCAGTACCCGGTGGACCTGGCAACT-GGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gcagctgcttcaactactgcaatttgtgaacctcccattgttgtttttagCTGCGTCAGTACCCAGTGGACCTG---GCTCGGGGCACGGGCTGGGCCTTGGACTGTGGAGACACAGAATGGACGGCTCATTGAAGTGGAGCAAAATgtgagtgaaaaaatgggggattgcccaagggatggcagggctaacaactt Alignment from CESAR CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gcagctgcttcaactactgcaatttgtgaacctcccattgttgtttttagCTGCGTCAGTACCCAGTGGACCTGGCT--CGGGGCACGGGCTGGGCCTTGGACTGTGGAGACACAGAATGGACGGCTCATTGAAGTGGAGCAAAATgtgagtgaaaaaatgggggattgcccaagggatggcagggctaacaactt Alignment from Spaln_aa2Genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gcagctgcttcaactactgcaatttgtgaacctcccattgttgtttttagCTGCGTCAGTACCCAGTGGACCTGGCTC--GGGGCACGGGCTGGGCCTTGGACTGTGGAGACACAGAATGGACGGCTCATTGAAGTGGAGCAAAATgtgagtgaaaaaatgggggattgcccaagggatggcagggctaacaactt Alignment from Spaln_nt2Genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gcagctgcttcaactactgcaatttgtgaacctcccattgttgtttttagCTGCGTCAGTACCCAGTGGACCTGGC--TCGGGGCACGGGCTGGGCCTTGGACTGTGGAGACACAGAATGGACGGCTCATTGAAGTGGAGCAAAATgtgagtgaaaaaatgggggattgcccaagggatggcagggctaacaactt Alignment from Pairagon CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gcagctgcttcaactactgcaatttgtgaacctcccattgttgtttttagCTGCGTCAGTACCCAGTGGACCTGGC--TCGGGGCACGGGCTGGGCCTTGGACTGTGGAGACACAGAATGGACGGCTCATTGAAGTGGAGCAAAATgtgagtgaaaaaatgggggattgcccaagggatggcagggctaacaactt Alignment from Exonerate_protein2genome CTGCGCCAGTACCCGGTGGACCTGGCA-ACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gcagctgcttcaactactgcaatttgtgaacctcccattgttgtttttagCTGCGTCAGTACCCAGTGGACCTGGCTC---GGGGCACGGGCTGGGCCTTGGACTGTGGAGACACAGAATGGACGGCTCATTGAAGTGGAGCAAAATgtgagtgaaaaaatgggggattgcccaagggatggcagggctaacaactt Alignment from Exonerate_coding2genome CTGCGCCAGTACCCGGTGGACCTGGCA-ACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT gcagctgcttcaactactgcaatttgtgaacctcccattgttgtttttagCTGCGTCAGTACCCAGTGGACCTGGCTC---GGGGCACGGGCTGGGCCTTGGACTGTGGAGACACAGAATGGACGGCTCATTGAAGTGGAGCAAAATgtgagtgaaaaaatgggggattgcccaagggatggcagggctaacaactt Alignment from GeneWise CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT-------------------------------------------------- gcagctgcttcaactactgcaatttgtgaacctcccattgttgtttttagCTGCGTCAGTACCCAGTGGACCTGGCTC--GGGGCACGGGCTGGGCCTTGGACTGTGGAGACACAGAATGGACGGCTCATTGAAGTGGAGCAAAATGTGAGTGAAAAAATGGGGGATTGCCCAAGGGATGGCAGGGCTAACAACTT #### Ccdc88b_ID1833_16 --> 1 - 0 Original Alignment gTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTG-GAGGAGGAGCTGATTCAG gatgagtaaggactaggtgttaagacctccatcactatcctgtctcccaggTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAACATCTGCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCACGAGCCCTGCAGTTGCGAGGAGGAGCTCATCCAGgtgagtctgcctgatacaaaggggctggcaaccatctacaatccaacaat Alignment from CESAR gTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTG-GAGGAGGAGCTGATTCAG gatgagtaaggactaggtgttaagacctccatcactatcctgtctcccaggTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAACATCTGCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCACGAGCCCTGCAGTTGCGAGGAGGAGCTCATCCAGgtgagtctgcctgatacaaaggggctggcaaccatctacaatccaacaat Alignment from Spaln_aa2Genome GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTG-GAGGAGGAGCTGATTCAG gatgagtaaggactaggtgttaagacctccatcactatcctgtctcccagGTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAACATCTGCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCACGAGCCCTGCAGTTGcGAGGAGGAGCTCATCCAGgtgagtctgcctgatacaaaggggctggcaaccatctacaatccaacaat Alignment from Spaln_nt2Genome GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTG-GAGGAGGAGCTGATTCAG gatgagtaaggactaggtgttaagacctccatcactatcctgtctcccagGTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAACATCTGCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCACGAGCCCTGCAGTTGCGAGGAGGAGCTCATCCAGgtgagtctgcctgatacaaaggggctggcaaccatctacaatccaacaat Alignment from Pairagon GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTG-GAGGAGGAGCTGATTCAG gatgagtaaggactaggtgttaagacctccatcactatcctgtctcccagGTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAACATCTGCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCACGAGCCCTGCAGTTGCGAGGAGGAGCTCATCCAGgtgagtctgcctgatacaaaggggctggcaaccatctacaatccaacaat Alignment from Exonerate_protein2genome GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTG-GAGGAGGAGCTGATTCAG gatgagtaaggactaggtgttaagacctccatcactatcctgtctcccagGTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAACATCTGCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCACGAGCCCTGCAGTTGCGAGGAGGAGCTCATCCAGgtgagtctgcctgatacaaaggggctggcaaccatctacaatccaacaat Alignment from Exonerate_coding2genome GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTG-GAGGAGGAGCTGATTCAG gatgagtaaggactaggtgttaagacctccatcactatcctgtctcccagGTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAACATCTGCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCACGAGCCCTGCAGTTGCGAGGAGGAGCTCATCCAGgtgagtctgcctgatacaaaggggctggcaaccatctacaatccaacaat Alignment from GeneWise GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAG-CTGGAGGAGGAGCTGATTCAG gatgagtaaggactaggtgttaagacctccatcactatcctgtctcccagGTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAACATCTGCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCACGAGCCCTGCAGTTGCGAGGAGGAGCTCATCCAGgtgagtctgcctgatacaaaggggctggcaaccatctacaatccaacaat #### Ccdc88b_ID1836_13 --> 2 - 0 Original Alignment ccTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTA-CAGATGCTTCAGGCACAGCTTGGCAGCCAG gggcaggagtgggagaggatgaacagaatagtatttggcttactcaccagccTCCCTACCTGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGGTGGGAGACTGAGGGCAGTGGAACGGGAAAACCGGGAGCTTCGAGGTCAACTACCGTATGCTTCAGGCACAGCTTGGCAGCCAGgtgaggtcctccagtattcttattttccatattttcattgtttcccaccc Alignment from CESAR ccTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAG-ATGCTTCAGGCACAGCTTGGCAGCCAG gggcaggagtgggagaggatgaacagaatagtatttggcttactcaccagccTCCCTACCTGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGGTGGGAGACTGAGGGCAGTGGAACGGGAAAACCGGGAGCTTCGAGGTCAACTACCGTATGCTTCAGGCACAGCTTGGCAGCCAGgtgaggtcctccagtattcttattttccatattttcattgtttcccaccc Alignment from Spaln_aa2Genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTA-CAGATGCTTCAGGCACAGCTTGGCAGCCAG gggcaggagtgggagaggatgaacagaatagtatttggcttactcaccagCCTCCCTACCTGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGGTGGGAGACTGAGGGCAGTGGAACGGGAAAACCGGGAGCTTCGAGGTCAACTAcCGTATGCTTCAGGCACAGCTTGGCAGCCAGgtgaggtcctccagtattcttattttccatattttcattgtttcccaccc Alignment from Spaln_nt2Genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAG-ATGCTTCAGGCACAGCTTGGCAGCCAG gggcaggagtgggagaggatgaacagaatagtatttggcttactcaccagCCTCCCTACCTGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGGTGGGAGACTGAGGGCAGTGGAACGGGAAAACCGGGAGCTTCGAGGTCAACTACCGTATGCTTCAGGCACAGCTTGGCAGCCAGgtgaggtcctccagtattcttattttccatattttcattgtttcccaccc Alignment from Pairagon CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAG-ATGCTTCAGGCACAGCTTGGCAGCCAG gggcaggagtgggagaggatgaacagaatagtatttggcttactcaccagCCTCCCTACCTGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGGTGGGAGACTGAGGGCAGTGGAACGGGAAAACCGGGAGCTTCGAGGTCAACTACCGTATGCTTCAGGCACAGCTTGGCAGCCAGgtgaggtcctccagtattcttattttccatattttcattgtttcccaccc Alignment from Exonerate_protein2genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTA-CAGATGCTTCAGGCACAGCTTGGCAGCCAG gggcaggagtgggagaggatgaacagaatagtatttggcttactcaccagCCTCCCTACCTGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGGTGGGAGACTGAGGGCAGTGGAACGGGAAAACCGGGAGCTTCGAGGTCAACTACCGTATGCTTCAGGCACAGCTTGGCAGCCAGgtgaggtcctccagtattcttattttccatattttcattgtttcccaccc Alignment from Exonerate_coding2genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTA-CAGATGCTTCAGGCACAGCTTGGCAGCCAG gggcaggagtgggagaggatgaacagaatagtatttggcttactcaccagCCTCCCTACCTGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGGTGGGAGACTGAGGGCAGTGGAACGGGAAAACCGGGAGCTTCGAGGTCAACTACCGTATGCTTCAGGCACAGCTTGGCAGCCAGgtgaggtcctccagtattcttattttccatattttcattgtttcccaccc Alignment from GeneWise CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTA-CAGATGCTTCAGGCACAGCTTGGCAGCCAG gggcaggagtgggagaggatgaacagaatagtatttggcttactcaccagCCTCCCTACCTGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGGTGGGAGACTGAGGGCAGTGGAACGGGAAAACCGGGAGCTTCGAGGTCAACTACCGTATGCTTCAGGCACAGCTTGGCAGCCAGgtgaggtcctccagtattcttattttccatattttcattgtttcccaccc #### Ccdc88b_ID1837_12 --> 0 - 1 Original Alignment GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGG-AGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGg ggataagcaagcttgatgaacaggatgcagacttgtattcttttccctagGACCTGGACTCTCTGCGGCACCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGACAGTCTGGAGCCACCCCCAGGTTCCCCTGGGGAGggtaaggtaggcctagggtaagggcaaggatctgggggggaaggcagcccg Alignment from CESAR GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGG-AGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGg ggataagcaagcttgatgaacaggatgcagacttgtattcttttccctagGACCTGGACTCTCTGCGGCACCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGACAGTCTGGAGCCACCCCCAGGTTCCCCTGGGGAGggtaaggtaggcctagggtaagggcaaggatctgggggggaaggcagcccg Alignment from Spaln_aa2Genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGG-AGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggataagcaagcttgatgaacaggatgcagacttgtattcttttccctagGACCTGGACTCTCTGCGGCACCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGAcAGTCTGGAGCCACCCCCAGGTTCCCCTGGGGAGGgtaaggtaggcctagggtaagggcaaggatctgggggggaaggcagcccg Alignment from Spaln_nt2Genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGG-AGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggataagcaagcttgatgaacaggatgcagacttgtattcttttccctagGACCTGGACTCTCTGCGGCACCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGACAGTCTGGAGCCACCCCCAGGTTCCCCTGGGGAGGgtaaggtaggcctagggtaagggcaaggatctgggggggaaggcagcccg Alignment from Pairagon GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGG-AGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggataagcaagcttgatgaacaggatgcagacttgtattcttttccctagGACCTGGACTCTCTGCGGCACCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGACAGTCTGGAGCCACCCCCAGGTTCCCCTGGGGAGGgtaaggtaggcctagggtaagggcaaggatctgggggggaaggcagcccg Alignment from Exonerate_protein2genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGG-AGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggataagcaagcttgatgaacaggatgcagacttgtattcttttccctagGACCTGGACTCTCTGCGGCACCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGACAGTCTGGAGCCACCCCCAGGTTCCCCTGGGGAGGgtaaggtaggcctagggtaagggcaaggatctgggggggaaggcagcccg Alignment from Exonerate_coding2genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGG-AGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggataagcaagcttgatgaacaggatgcagacttgtattcttttccctagGACCTGGACTCTCTGCGGCACCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGACAGTCTGGAGCCACCCCCAGGTTCCCCTGGGGAGGgtaaggtaggcctagggtaagggcaaggatctgggggggaaggcagcccg Alignment from GeneWise GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGG-AGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggataagcaagcttgatgaacaggatgcagacttgtattcttttccctagGACCTGGACTCTCTGCGGCACCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGAGACAGTCTGGAGCCACCCCCAGGTTCCCCTGGGGAGGgtaaggtaggcctagggtaagggcaaggatctgggggggaaggcagcccg #### Ccdc88b_ID1839_10 --> 0 - 0 Original Alignment ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCT-GCAGAGGTCTTCAAGGGTCAGCTGGAG cccctttgtcccatggctcactaatcttatatattggtgtatttttacagACTCAGGCACTGTCCGCCCAAGCAAAGCGTGCAGAGCTCTGCCGTGAGGAAGCAGAGGCACTGCAG---GAGGCTGGTCACCTGCCACGCCTGCAGGAAGAACTCCGGCGCTGTCGTGAGAAGCTTCAGGCTCGCGGAGGTCTTCAAGGGTCATTTGGAGgtttgttgggccatgacagagccagagacagagtatttggtgggtgtagt Alignment from CESAR ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCT-GCAGAGGTCTTCAAGGGTCAGCTGGAG cccctttgtcccatggctcactaatcttatatattggtgtatttttacagACTCAGGCACTGTCCGCCCAAGCAAAGCGTGCAGAGCTCTGCCGTGAGGAAGCAGAGGCACTGCAGGAG---GCTGGTCACCTGCCACGCCTGCAGGAAGAACTCCGGCGCTGTCGTGAGAAGCTTCAGGCTCGCGGAGGTCTTCAAGGGTCATTTGGAGgtttgttgggccatgacagagccagagacagagtatttggtgggtgtagt Alignment from Spaln_aa2Genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCT-GCAGAGGTCTTCAAGGGTCAGCTGGAG cccctttgtcccatggctcactaatcttatatattggtgtatttttacagACTCAGGCACTGTCCGCCCAAGCAAAGCGTGCAGAGCTCTGCCGTGAGGAAGCAGAGGCACTGCAGGAG---GCTGGTCACCTGCCACGCCTGCAGGAAGAACTCCGGCGCTGTCGTGAGAAGCTTCAGGCTcGCGGAGGTCTTCAAGGGTCATTTGGAGgtttgttgggccatgacagagccagagacagagtatttggtgggtgtagt Alignment from Spaln_nt2Genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCT-GCAGAGGTCTTCAAGGGTCAGCTGGAG cccctttgtcccatggctcactaatcttatatattggtgtatttttacagACTCAGGCACTGTCCGCCCAAGCAAAGCGTGCAGAGCTCTGCCGTGAGGAAGCAGAGGCACTGCAGGA---GGCTGGTCACCTGCCACGCCTGCAGGAAGAACTCCGGCGCTGTCGTGAGAAGCTTCAGGCTCGCGGAGGTCTTCAAGGGTCATTTGGAGgtttgttgggccatgacagagccagagacagagtatttggtgggtgtagt Alignment from Pairagon ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCT-GCAGAGGTCTTCAAGGGTCAGCTGGAG cccctttgtcccatggctcactaatcttatatattggtgtatttttacagACTCAGGCACTGTCCGCCCAAGCAAAGCGTGCAGAGCTCTGCCGTGAGGAAGCAGAGGCACTGCAGGA---GGCTGGTCACCTGCCACGCCTGCAGGAAGAACTCCGGCGCTGTCGTGAGAAGCTTCAGGCTCGCGGAGGTCTTCAAGGGTCATTTGGAGgtttgttgggccatgacagagccagagacagagtatttggtgggtgtagt Alignment from Exonerate_protein2genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCT-GCAGAGGTCTTCAAGGGTCAGCTGGAG cccctttgtcccatggctcactaatcttatatattggtgtatttttacagACTCAGGCACTGTCCGCCCAAGCAAAGCGTGCAGAGCTCTGCCGTGAGGAAGCAGAGGCACTGCAGGAG---GCTGGTCACCTGCCACGCCTGCAGGAAGAACTCCGGCGCTGTCGTGAGAAGCTTCAGGCTCGCGGAGGTCTTCAAGGGTCATTTGGAGgtttgttgggccatgacagagccagagacagagtatttggtgggtgtagt Alignment from Exonerate_coding2genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCT-GCAGAGGTCTTCAAGGGTCAGCTGGAG cccctttgtcccatggctcactaatcttatatattggtgtatttttacagACTCAGGCACTGTCCGCCCAAGCAAAGCGTGCAGAGCTCTGCCGTGAGGAAGCAGAGGCACTGCAGGAG---GCTGGTCACCTGCCACGCCTGCAGGAAGAACTCCGGCGCTGTCGTGAGAAGCTTCAGGCTCGCGGAGGTCTTCAAGGGTCATTTGGAGgtttgttgggccatgacagagccagagacagagtatttggtgggtgtagt Alignment from GeneWise ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCT-GCAGAGGTCTTCAAGGGTCAGCTGGAG cccctttgtcccatggctcactaatcttatatattggtgtatttttacagACTCAGGCACTGTCCGCCCAAGCAAAGCGTGCAGAGCTCTGCCGTGAGGAAGCAGAGGCACTGCAGGAG---GCTGGTCACCTGCCACGCCTGCAGGAAGAACTCCGGCGCTGTCGTGAGAAGCTTCAGGCTCGCGGAGGTCTTCAAGGGTCATTTGGAGgtttgttgggccatgacagagccagagacagagtatttggtgggtgtagt #### Ccdc88b_ID1845_4 --> 0 - 1 Original Alignment GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTC-CAGACAATGGGGTGTGACCCCTTCTCAg ggcccagcagcacctgttaggatgtcttgttttgtttctttctccccaagGAGGAGCTACAGCTGCTAATCCTATCACCACCTCCAGACCTCCCAGACTACAGGGTGCGAGCCCTTCTCAggtcagtcttcctaccctccttctgtcatcggtcactgccctatatcctta Alignment from CESAR GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTC-CAGACAATGGGGTGTGACCCCTTCTCAg ggcccagcagcacctgttaggatgtcttgttttgtttctttctccccaagGAGGAGCTACAGCTGCTAATCCTATCACCACCTCCAGACCTCCCAGACTACAGGGTGCGAGCCCTTCTCAggtcagtcttcctaccctccttctgtcatcggtcactgccctatatcctta Alignment from Spaln_aa2Genome GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTC-CAGACAATGGGGTGTGACCCCTTCTCAG ggcccagcagcacctgttaggatgtcttgttttgtttctttctccccaagGAGGAGCTACAGCTGCTAATCCTATCACCACCTCCAGACCTCcCAGACTACAGGGTGCGAGCCCTTCTCAGgtcagtcttcctaccctccttctgtcatcggtcactgccctatatcctta Alignment from Spaln_nt2Genome GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCC-AGACAATGGGGTGTGACCCCTTCTCAG ggcccagcagcacctgttaggatgtcttgttttgtttctttctccccaagGAGGAGCTACAGCTGCTAATCCTATCACCACCTCCAGACCTCCCAGACTACAGGGTGCGAGCCCTTCTCAGgtcagtcttcctaccctccttctgtcatcggtcactgccctatatcctta Alignment from Pairagon GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCT-CCAGACAATGGGGTGTGACCCCTTCTCAG ggcccagcagcacctgttaggatgtcttgttttgtttctttctccccaagGAGGAGCTACAGCTGCTAATCCTATCACCACCTCCAGACCTCCCAGACTACAGGGTGCGAGCCCTTCTCAGgtcagtcttcctaccctccttctgtcatcggtcactgccctatatcctta Alignment from Exonerate_protein2genome GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTC-CAGACAATGGGGTGTGACCCCTTCTCAG ggcccagcagcacctgttaggatgtcttgttttgtttctttctccccaagGAGGAGCTACAGCTGCTAATCCTATCACCACCTCCAGACCTCCCAGACTACAGGGTGCGAGCCCTTCTCAGgtcagtcttcctaccctccttctgtcatcggtcactgccctatatcctta Alignment from Exonerate_coding2genome GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTC-CAGACAATGGGGTGTGACCCCTTCTCAG ggcccagcagcacctgttaggatgtcttgttttgtttctttctccccaagGAGGAGCTACAGCTGCTAATCCTATCACCACCTCCAGACCTCCCAGACTACAGGGTGCGAGCCCTTCTCAGgtcagtcttcctaccctccttctgtcatcggtcactgccctatatcctta Alignment from GeneWise GAGGAGCTACAGCTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGG---------------------------------------TGTGAC---------------------- ggcccagcagcacctgttaggatgtcttgttttgtttctttctccccaagGAGGAGCTACAGCTGCTAATCCTATCACCACCTCCAGACCTCCCAGACTACAGGGTGCGAGCCCTTCTCAGGTCAGTCTTCCTACCCTCCTTCTGTCATCGGTCACTGCCCTATATCCTTA #### Ccdc88b_ID1847_2 --> 0 - 2 Original Alignment GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAG-AAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCat cctggtattatgtatcagcccctcctccaaattatttcattctttccaagGCTCTGGGATTGGCTGGGCTTGTGGGGGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACGGAGCAAAAGATTCCTACGGCTGATCGATGGAGCCTTACTCCTTCGGGTGTTAGGCATTatgtaggtgacatggggaagttgagttggggggggggctatgaatggtagga Alignment from CESAR GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAG-AAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCat cctggtattatgtatcagcccctcctccaaattatttcattctttccaagGCTCTGGGATTGGCTGGGCTTGTGGGGGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACGGAGCAAAAGATTCCTACGGCTGATCGATGGAGCCTTACTCCTTCGGGTGTTAGGCATTatgtaggtgacatggggaagttgagttggggggggggctatgaatggtagga Alignment from Spaln_aa2Genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAG-AAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT cctggtattatgtatcagcccctcctccaaattatttcattctttccaagGCTCTGGGATTGGCTGGGCTTGTGGGGGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACGGAGcAAAAGATTCCTACGGCTGATCGATGGAGCCTTACTCCTTCGGGTGTTAGGCATTATgtaggtgacatggggaagttgagttggggggggggctatgaatggtagga Alignment from Spaln_nt2Genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAG-AAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT cctggtattatgtatcagcccctcctccaaattatttcattctttccaagGCTCTGGGATTGGCTGGGCTTGTGGGGGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACGGAGCAAAAGATTCCTACGGCTGATCGATGGAGCCTTACTCCTTCGGGTGTTAGGCATTATgtaggtgacatggggaagttgagttggggggggggctatgaatggtagga Alignment from Pairagon GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAG-AAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT cctggtattatgtatcagcccctcctccaaattatttcattctttccaagGCTCTGGGATTGGCTGGGCTTGTGGGGGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACGGAGCAAAAGATTCCTACGGCTGATCGATGGAGCCTTACTCCTTCGGGTGTTAGGCATTATgtaggtgacatggggaagttgagttggggggggggctatgaatggtagga Alignment from Exonerate_protein2genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAG-AAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT cctggtattatgtatcagcccctcctccaaattatttcattctttccaagGCTCTGGGATTGGCTGGGCTTGTGGGGGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACGGAGCAAAAGATTCCTACGGCTGATCGATGGAGCCTTACTCCTTCGGGTGTTAGGCATTATgtaggtgacatggggaagttgagttggggggggggctatgaatggtagga Alignment from Exonerate_coding2genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAG-AAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT cctggtattatgtatcagcccctcctccaaattatttcattctttccaagGCTCTGGGATTGGCTGGGCTTGTGGGGGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACGGAGCAAAAGATTCCTACGGCTGATCGATGGAGCCTTACTCCTTCGGGTGTTAGGCATTATgtaggtgacatggggaagttgagttggggggggggctatgaatggtagga Alignment from GeneWise GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAG-AAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT cctggtattatgtatcagcccctcctccaaattatttcattctttccaagGCTCTGGGATTGGCTGGGCTTGTGGGGGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACGGAGCAAAAGATTCCTACGGCTGATCGATGGAGCCTTACTCCTTCGGGTGTTAGGCATTATgtaggtgacatggggaagttgagttggggggggggctatgaatggtagga #### Cd5_ID2994_4 --> 2 - 1 Original Alignment agCCCCAGAGAACGACACCTCCACCC-ACAACCACCCCACCCACCACCGTGCCGGAGCCCACAg catatcctttgctccccacttcccacccctcgtgacgcttgttttctcagagCCCCAGAGAACAACACCTCCACCCCACAACCACCCCACCCACCACTGTGCCGGAGCCCACAggtcagtcagtgtacagtccttgtagaaaaggcagaggatgcactggtgta Alignment from CESAR agCCCCAGAGAACGACACCTCCA-CCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAg catatcctttgctccccacttcccacccctcgtgacgcttgttttctcagagCCCCAGAGAACAACACCTCCACCCCACAACCACCCCACCCACCACTGTGCCGGAGCCCACAggtcagtcagtgtacagtccttgtagaaaaggcagaggatgcactggtgta Alignment from Spaln_aa2Genome AGCCCCAGAGAACGACACCTCCA-CCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG catatcctttgctccccacttcccacccctcgtgacgcttgttttctcagAGCCCCAGAGAACAACACCTCCAcCCCACAACCACCCCACCCACCACTGTGCCGGAGCCCACAGgtcagtcagtgtacagtccttgtagaaaaggcagaggatgcactggtgta Alignment from Spaln_nt2Genome AGCCCCAGAGAACGACACCTCCA-CCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG catatcctttgctccccacttcccacccctcgtgacgcttgttttctcagAGCCCCAGAGAACAACACCTCCACCCCACAACCACCCCACCCACCACTGTGCCGGAGCCCACAGgtcagtcagtgtacagtccttgtagaaaaggcagaggatgcactggtgta Alignment from Pairagon AGCCCCAGAGAACGACACCTCCA-CCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG catatcctttgctccccacttcccacccctcgtgacgcttgttttctcagAGCCCCAGAGAACAACACCTCCACCCCACAACCACCCCACCCACCACTGTGCCGGAGCCCACAGgtcagtcagtgtacagtccttgtagaaaaggcagaggatgcactggtgta Alignment from Exonerate_protein2genome AGCCCCAGAGAACGACACCTCCA-CCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG catatcctttgctccccacttcccacccctcgtgacgcttgttttctcagAGCCCCAGAGAACAACACCTCCACCCCACAACCACCCCACCCACCACTGTGCCGGAGCCCACAGgtcagtcagtgtacagtccttgtagaaaaggcagaggatgcactggtgta Alignment from Exonerate_coding2genome AGCCCCAGAGAACGACACCTCCA-CCCACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG catatcctttgctccccacttcccacccctcgtgacgcttgttttctcagAGCCCCAGAGAACAACACCTCCACCCCACAACCACCCCACCCACCACTGTGCCGGAGCCCACAGgtcagtcagtgtacagtccttgtagaaaaggcagaggatgcactggtgta Alignment from GeneWise AGCCCCAGAGAACGACACCTCCACCC-ACAACCACCCCACCCACCACCGTGCCGGAGCCCACAG catatcctttgctccccacttcccacccctcgtgacgcttgttttctcagAGCCCCAGAGAACAACACCTCCACCCCACAACCACCCCACCCACCACTGTGCCGGAGCCCACAGgtcagtcagtgtacagtccttgtagaaaaggcagaggatgcactggtgta #### Cd6_ID3013_11 --> 2 - 1 Original Alignment gaCTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGACCCC-AGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAg ccaccaggactaaacagataatcccactaatttgttccaactcatcgtagaaCTTGAAGAGCTGCATGTTTCCCACATCCCAGCAGCTGACCCCCAGACCTTGTGTGGCAGATGTCCCCTCTCGGGGCTCACAGTACCATGTGAGTAACAACAGTGATTCCAGCACCTCG---------------TGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGTGTTTTATTCTCAGAAGAGTCCCCTCACAGAGCAACCCCCCAACCTGGAACTGGCTGGCTCTCCAGCAGTTTTTTCAggtaagtgtgtgtccttccatgttatcaaccctctgtgtaaactactcagg Alignment from CESAR gaCTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGAC-CCCAGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAg ccaccaggactaaacagataatcccactaatttgttccaactcatcgtagaaCTTGAAGAGCTGCATGTTTCCCACATCCCAGCAGCTGACCCCCAGACCTTGTGTGGCAGATGTCCCCTCTCGGGGCTCACAGTACCATGTGAGTAACAACAGTGATTCCAGCACCTCG---------------TGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGTGTTTTATTCTCAGAAGAGTCCCCTCACAGAGCAACCCCCCAACCTGGAACTGGCTGGCTCTCCAGCAGTTTTTTCAggtaagtgtgtgtccttccatgttatcaaccctctgtgtaaactactcagg Alignment from Spaln_aa2Genome GACTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGAC-CCCAGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAG ccaccaggactaaacagataatcccactaatttgttccaactcatcgtagAACTTGAAGAGCTGCATGTTTCCCACATCCCAGCAGCTGACcCCCAGACCTTGTGTGGCAGATGTCCCCTCTCGGGGCTCACAGTACCATGTGAGTAACAACAGTGATTCCAGCACCTCG---------------TGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGTGTTTTATTCTCAGAAGAGTCCCCTCACAGAGCAACCCCCCAACCTGGAACTGGCTGGCTCTCCAGCAGTTTTTTCAGgtaagtgtgtgtccttccatgttatcaaccctctgtgtaaactactcagg Alignment from Spaln_nt2Genome GACTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGA-CCCCAGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAG ccaccaggactaaacagataatcccactaatttgttccaactcatcgtagAACTTGAAGAGCTGCATGTTTCCCACATCCCAGCAGCTGACCCCCAGACCTTGTGTGGCAGATGTCCCCTCTCGGGGCTCACAGTACCATGTGAGTAACAACAGTGATTCCAGCAC---------------CTCGTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGTGTTTTATTCTCAGAAGAGTCCCCTCACAGAGCAACCCCCCAACCTGGAACTGGCTGGCTCTCCAGCAGTTTTTTCAGgtaagtgtgtgtccttccatgttatcaaccctctgtgtaaactactcagg Alignment from Pairagon GACTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGA-CCCCAGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAG ccaccaggactaaacagataatcccactaatttgttccaactcatcgtagAACTTGAAGAGCTGCATGTTTCCCACATCCCAGCAGCTGACCCCCAGACCTTGTGTGGCAGATGTCCCCTCTCGGGGCTCACAGTACCATGTGAGTAACAACAGTGATTCCAGCACCTC---------------GTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGTGTTTTATTCTCAGAAGAGTCCCCTCACAGAGCAACCCCCCAACCTGGAACTGGCTGGCTCTCCAGCAGTTTTTTCAGgtaagtgtgtgtccttccatgttatcaaccctctgtgtaaactactcagg Alignment from Exonerate_protein2genome GACTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGAC-CCCAGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAG ccaccaggactaaacagataatcccactaatttgttccaactcatcgtagAACTTGAAGAGCTGCATGTTTCCCACATCCCAGCAGCTGACCCCCAGACCTTGTGTGGCAGATGTCCCCTCTCGGGGCTCACAGTACCATGTGAGTAACAACAGTGATTCCAGCACCTCG---------------TGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGTGTTTTATTCTCAGAAGAGTCCCCTCACAGAGCAACCCCCCAACCTGGAACTGGCTGGCTCTCCAGCAGTTTTTTCAGgtaagtgtgtgtccttccatgttatcaaccctctgtgtaaactactcagg Alignment from Exonerate_coding2genome GACTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGAC-CCCAGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAG ccaccaggactaaacagataatcccactaatttgttccaactcatcgtagAACTTGAAGAGCTGCATGTTTCCCACATCCCAGCAGCTGACCCCCAGACCTTGTGTGGCAGATGTCCCCTCTCGGGGCTCACAGTACCATGTGAGTAACAACAGTGATTCCAGCACCTCG---------------TGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGTGTTTTATTCTCAGAAGAGTCCCCTCACAGAGCAACCCCCCAACCTGGAACTGGCTGGCTCTCCAGCAGTTTTTTCAGgtaagtgtgtgtccttccatgttatcaaccctctgtgtaaactactcagg Alignment from GeneWise GACTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGACCCC-AGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAG ccaccaggactaaacagataatcccactaatttgttccaactcatcgtagAACTTGAAGAGCTGCATGTTTCCCACATCCCAGCAGCTGACCCCCAGACCTTGTGTGGCAGATGTCCCCTCTCGGGGCTCACAGTACCATGTGAGTAACAACAGTGATTCCAGCACCTCG---------------TGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGTGTTTTATTCTCAGAAGAGTCCCCTCACAGAGCAACCCCCCAACCTGGAACTGGCTGGCTCTCCAGCAGTTTTTTCAGgtaagtgtgtgtccttccatgttatcaaccctctgtgtaaactactcagg #### Cdc42bpg_ID1573_3 --> 0 - 0 Original Alignment GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAG-ATGCTGAAGAGGGCTGAG ggggctttcctgttggtttggtctagtcgccatgtatttcttcattgcagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGATGTTGCATAAGTGGGAGCATGCTGAAGAGGGCTGAGgtatgattgtggccaattgcccactgctaactgatagaagaagatatgct Alignment from CESAR GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAG-ATGCTGAAGAGGGCTGAG ggggctttcctgttggtttggtctagtcgccatgtatttcttcattgcagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGATGTTGCATAAGTGGGAGCATGCTGAAGAGGGCTGAGgtatgattgtggccaattgcccactgctaactgatagaagaagatatgct Alignment from Spaln_aa2Genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAG-ATGCTGAAGAGGGCTGAG ggggctttcctgttggtttggtctagtcgccatgtatttcttcattgcagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGATGTTGCATAAGTGGGAGcATGCTGAAGAGGGCTGAGgtatgattgtggccaattgcccactgctaactgatagaagaagatatgct Alignment from Spaln_nt2Genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAG-ATGCTGAAGAGGGCTGAG ggggctttcctgttggtttggtctagtcgccatgtatttcttcattgcagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGATGTTGCATAAGTGGGAGCATGCTGAAGAGGGCTGAGgtatgattgtggccaattgcccactgctaactgatagaagaagatatgct Alignment from Pairagon GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAG-ATGCTGAAGAGGGCTGAG ggggctttcctgttggtttggtctagtcgccatgtatttcttcattgcagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGATGTTGCATAAGTGGGAGCATGCTGAAGAGGGCTGAGgtatgattgtggccaattgcccactgctaactgatagaagaagatatgct Alignment from Exonerate_protein2genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAG-ATGCTGAAGAGGGCTGAG ggggctttcctgttggtttggtctagtcgccatgtatttcttcattgcagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGATGTTGCATAAGTGGGAGCATGCTGAAGAGGGCTGAGgtatgattgtggccaattgcccactgctaactgatagaagaagatatgct Alignment from Exonerate_coding2genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAG-ATGCTGAAGAGGGCTGAG ggggctttcctgttggtttggtctagtcgccatgtatttcttcattgcagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGATGTTGCATAAGTGGGAGCATGCTGAAGAGGGCTGAGgtatgattgtggccaattgcccactgctaactgatagaagaagatatgct Alignment from GeneWise GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGG-GAGATGCTGAAGAGGGCTGAG ggggctttcctgttggtttggtctagtcgccatgtatttcttcattgcagGTTGTTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCCATGAAGATGTTGCATAAGTGGGAGCATGCTGAAGAGGGCTGAGgtatgattgtggccaattgcccactgctaactgatagaagaagatatgct #### Cdc42bpg_ID1574_4 --> 0 - 0 Original Alignment ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTC-CAGGATGAAGAGTACCTG agctgaccccattgccccccctgctctgttttggcatttttatttcttagACAACCTGTTTCCGGGAGGAACGAGATGTTCTAGTGAAGGGAGACCACTGCTGGGTGACTGCTCTGCACTACACCTTCCCAGGATGAGGAGTACTTGgtgagcatccttgattagtagaggggccttgccaagataaaagaaagtgc Alignment from CESAR ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTC-CAGGATGAAGAGTACCTG agctgaccccattgccccccctgctctgttttggcatttttatttcttagACAACCTGTTTCCGGGAGGAACGAGATGTTCTAGTGAAGGGAGACCACTGCTGGGTGACTGCTCTGCACTACACCTTCCCAGGATGAGGAGTACTTGgtgagcatccttgattagtagaggggccttgccaagataaaagaaagtgc Alignment from Spaln_aa2Genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTC-CAGGATGAAGAGTACCTG agctgaccccattgccccccctgctctgttttggcatttttatttcttagACAACCTGTTTCCGGGAGGAACGAGATGTTCTAGTGAAGGGAGACCACTGCTGGGTGACTGCTCTGCACTACACCTTCcCAGGATGAGGAGTACTTGgtgagcatccttgattagtagaggggccttgccaagataaaagaaagtgc Alignment from Spaln_nt2Genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTCC-AGGATGAAGAGTACCTG agctgaccccattgccccccctgctctgttttggcatttttatttcttagACAACCTGTTTCCGGGAGGAACGAGATGTTCTAGTGAAGGGAGACCACTGCTGGGTGACTGCTCTGCACTACACCTTCCCAGGATGAGGAGTACTTGgtgagcatccttgattagtagaggggccttgccaagataaaagaaagtgc Alignment from Pairagon ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTT-CCAGGATGAAGAGTACCTG agctgaccccattgccccccctgctctgttttggcatttttatttcttagACAACCTGTTTCCGGGAGGAACGAGATGTTCTAGTGAAGGGAGACCACTGCTGGGTGACTGCTCTGCACTACACCTTCCCAGGATGAGGAGTACTTGgtgagcatccttgattagtagaggggccttgccaagataaaagaaagtgc Alignment from Exonerate_protein2genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTC-CAGGATGAAGAGTACCTG agctgaccccattgccccccctgctctgttttggcatttttatttcttagACAACCTGTTTCCGGGAGGAACGAGATGTTCTAGTGAAGGGAGACCACTGCTGGGTGACTGCTCTGCACTACACCTTCCCAGGATGAGGAGTACTTGgtgagcatccttgattagtagaggggccttgccaagataaaagaaagtgc Alignment from Exonerate_coding2genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTC-CAGGATGAAGAGTACCTG agctgaccccattgccccccctgctctgttttggcatttttatttcttagACAACCTGTTTCCGGGAGGAACGAGATGTTCTAGTGAAGGGAGACCACTGCTGGGTGACTGCTCTGCACTACACCTTCCCAGGATGAGGAGTACTTGgtgagcatccttgattagtagaggggccttgccaagataaaagaaagtgc Alignment from GeneWise ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCTCTGCACTACGCCTTC-CAGGATGAAGAGTACCTG agctgaccccattgccccccctgctctgttttggcatttttatttcttagACAACCTGTTTCCGGGAGGAACGAGATGTTCTAGTGAAGGGAGACCACTGCTGGGTGACTGCTCTGCACTACACCTTCCCAGGATGAGGAGTACTTGgtgagcatccttgattagtagaggggccttgccaagataaaagaaagtgc #### Cdc42bpg_ID1576_6 --> 1 - 0 Original Alignment gGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTG-GCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG agcacacacacacacctacaccaagcctaactgtgagctcctttctccagaGATGTGAAGCCAGACAACATTCTGCTGGACATGAATGGACACCTTTGCCTTCGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATGgtgaggaaaccacctagaatttcacagacaagtgtagagacattgggttc Alignment from CESAR gGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTG-GCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG agcacacacacacacctacaccaagcctaactgtgagctcctttctccagaGATGTGAAGCCAGACAACATTCTGCTGGACATGAATGGACACCTTTGCCTTCGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATGgtgaggaaaccacctagaatttcacagacaagtgtagagacattgggttc Alignment from Spaln_aa2Genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTG-GCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG agcacacacacacacctacaccaagcctaactgtgagctcctttctccagAGATGTGAAGCCAGACAACATTCTGCTGGACATGAATGGACACCTTTGCCTTcGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATGgtgaggaaaccacctagaatttcacagacaagtgtagagacattgggttc Alignment from Spaln_nt2Genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTG-GCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG agcacacacacacacctacaccaagcctaactgtgagctcctttctccagAGATGTGAAGCCAGACAACATTCTGCTGGACATGAATGGACACCTTTGCCTTCGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATGgtgaggaaaccacctagaatttcacagacaagtgtagagacattgggttc Alignment from Pairagon GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCC-TGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG agcacacacacacacctacaccaagcctaactgtgagctcctttctccagAGATGTGAAGCCAGACAACATTCTGCTGGACATGAATGGACACCTTTGCCTTCGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATGgtgaggaaaccacctagaatttcacagacaagtgtagagacattgggttc Alignment from Exonerate_protein2genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTG-GCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG agcacacacacacacctacaccaagcctaactgtgagctcctttctccagAGATGTGAAGCCAGACAACATTCTGCTGGACATGAATGGACACCTTTGCCTTCGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATGgtgaggaaaccacctagaatttcacagacaagtgtagagacattgggttc Alignment from Exonerate_coding2genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTG-GCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG agcacacacacacacctacaccaagcctaactgtgagctcctttctccagAGATGTGAAGCCAGACAACATTCTGCTGGACATGAATGGACACCTTTGCCTTCGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATGgtgaggaaaccacctagaatttcacagacaagtgtagagacattgggttc Alignment from GeneWise GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATC-CGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG agcacacacacacacctacaccaagcctaactgtgagctcctttctccagAGATGTGAAGCCAGACAACATTCTGCTGGACATGAATGGACACCTTTGCCTTCGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATGgtgaggaaaccacctagaatttcacagacaagtgtagagacattgggttc #### Cdc42bpg_ID1577_7 --> 0 - 0 Original Alignment GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAA-ACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG gctggctccagtgctgtggcctcacgattttctgttttttcataactcagGTGGATTCATCAGTTGCTGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGCAAGGGCCACTATGGTCCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTCTTTGGGGAACACACCCTTTTATGCTGAATCTCTGGTAGAAACCTACGGGAAGATCATGAACCATGAGgtaggtctgtgtggcccagggaccccttcattgtggcattgctggttact Alignment from CESAR GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAA-ACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG gctggctccagtgctgtggcctcacgattttctgttttttcataactcagGTGGATTCATCAGTTGCTGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGCAAGGGCCACTATGGTCCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTCTTTGGGGAACACACCCTTTTATGCTGAATCTCTGGTAGAAACCTACGGGAAGATCATGAACCATGAGgtaggtctgtgtggcccagggaccccttcattgtggcattgctggttact Alignment from Spaln_aa2Genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAA-ACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG gctggctccagtgctgtggcctcacgattttctgttttttcataactcagGTGGATTCATCAGTTGCTGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGCAAGGGCCACTATGGTCCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTCTTTGGGGAAcACACCCTTTTATGCTGAATCTCTGGTAGAAACCTACGGGAAGATCATGAACCATGAGgtaggtctgtgtggcccagggaccccttcattgtggcattgctggttact Alignment from Spaln_nt2Genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTT-GGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG gctggctccagtgctgtggcctcacgattttctgttttttcataactcagGTGGATTCATCAGTTGCTGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGCAAGGGCCACTATGGTCCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTCTTTGGGGAACACACCCTTTTATGCTGAATCTCTGGTAGAAACCTACGGGAAGATCATGAACCATGAGgtaggtctgtgtggcccagggaccccttcattgtggcattgctggttact Alignment from Pairagon GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAA-ACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG gctggctccagtgctgtggcctcacgattttctgttttttcataactcagGTGGATTCATCAGTTGCTGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGCAAGGGCCACTATGGTCCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTCTTTGGGGAACACACCCTTTTATGCTGAATCTCTGGTAGAAACCTACGGGAAGATCATGAACCATGAGgtaggtctgtgtggcccagggaccccttcattgtggcattgctggttact Alignment from Exonerate_protein2genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAA-ACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG gctggctccagtgctgtggcctcacgattttctgttttttcataactcagGTGGATTCATCAGTTGCTGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGCAAGGGCCACTATGGTCCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTCTTTGGGGAACACACCCTTTTATGCTGAATCTCTGGTAGAAACCTACGGGAAGATCATGAACCATGAGgtaggtctgtgtggcccagggaccccttcattgtggcattgctggttact Alignment from Exonerate_coding2genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAA-ACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG gctggctccagtgctgtggcctcacgattttctgttttttcataactcagGTGGATTCATCAGTTGCTGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGCAAGGGCCACTATGGTCCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTCTTTGGGGAACACACCCTTTTATGCTGAATCTCTGGTAGAAACCTACGGGAAGATCATGAACCATGAGgtaggtctgtgtggcccagggaccccttcattgtggcattgctggttact Alignment from GeneWise GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAA-ACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG gctggctccagtgctgtggcctcacgattttctgttttttcataactcagGTGGATTCATCAGTTGCTGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGCAAGGGCCACTATGGTCCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTCTTTGGGGAACACACCCTTTTATGCTGAATCTCTGGTAGAAACCTACGGGAAGATCATGAACCATGAGgtaggtctgtgtggcccagggaccccttcattgtggcattgctggttact #### Cdc42bpg_ID1578_8 --> 0 - 0 Original Alignment GACCACCTCCAGTTCCCTGCTGATGTGACT-GATGTGCCTGCTAGTGCCCAGGACCTGATCCGACAGCTGCTGTGCCGTCAGGAGGAGCGGCTGGGCCGTGGTGGGCTGGACGACTTCCGGAAGCACCCCTTCTTTGAAGGGGTCGATTGGGAGAGGCTTGCAACCAGCACAGCGCCATACATCCCTGAGCTTCGAGGGCCGATGGACACCTCCAACTTCGACGTGGATGATGATACCCTCAACCGTCCA ggttacttcatactaactggacccctgatgtgctcttgttctttggtcagGACCATCTCCAATTCCCTGCTGATGTGACTCGATGTGCCTGCTAGTGCCCAAGATCTGATCCGCCAGCTGCTATGCCGTCAAGAGGAGCAGCTGGGCCGTGGTGGGCTGGATGACTTCCGGAAGCACGCTTTCTTTGAAGGGGTTGATTGGGAGAGGCTTGCAACCAGCACAGCGCCATACATCCCTGAACTTCGAGGGCCAATGGACACCTCCAACTTTGACGTGGATGATGATACCCTCAACCGTCCAgtgagggatagatgttgctattagagacttggcttggccctttgactata Alignment from CESAR GACCACCTCCAGTTCCCTGCTGATGTGACT-GATGTGCCTGCTAGTGCCCAGGACCTGATCCGACAGCTGCTGTGCCGTCAGGAGGAGCGGCTGGGCCGTGGTGGGCTGGACGACTTCCGGAAGCACCCCTTCTTTGAAGGGGTCGATTGGGAGAGGCTTGCAACCAGCACAGCGCCATACATCCCTGAGCTTCGAGGGCCGATGGACACCTCCAACTTCGACGTGGATGATGATACCCTCAACCGTCCA ggttacttcatactaactggacccctgatgtgctcttgttctttggtcagGACCATCTCCAATTCCCTGCTGATGTGACTCGATGTGCCTGCTAGTGCCCAAGATCTGATCCGCCAGCTGCTATGCCGTCAAGAGGAGCAGCTGGGCCGTGGTGGGCTGGATGACTTCCGGAAGCACGCTTTCTTTGAAGGGGTTGATTGGGAGAGGCTTGCAACCAGCACAGCGCCATACATCCCTGAACTTCGAGGGCCAATGGACACCTCCAACTTTGACGTGGATGATGATACCCTCAACCGTCCAgtgagggatagatgttgctattagagacttggcttggccctttgactata Alignment from Spaln_aa2Genome GACCACCTCCAGTTCCCTGCTGATGTGACT-GATGTGCCTGCTAGTGCCCAGGACCTGATCCGACAGCTGCTGTGCCGTCAGGAGGAGCGGCTGGGCCGTGGTGGGCTGGACGACTTCCGGAAGCACCCCTTCTTTGAAGGGGTCGATTGGGAGAGGCTTGCAACCAGCACAGCGCCATACATCCCTGAGCTTCGAGGGCCGATGGACACCTCCAACTTCGACGTGGATGATGATACCCTCAACCGTCCA ggttacttcatactaactggacccctgatgtgctcttgttctttggtcagGACCATCTCCAATTCCCTGCTGATGTGACTcGATGTGCCTGCTAGTGCCCAAGATCTGATCCGCCAGCTGCTATGCCGTCAAGAGGAGCAGCTGGGCCGTGGTGGGCTGGATGACTTCCGGAAGCACGCTTTCTTTGAAGGGGTTGATTGGGAGAGGCTTGCAACCAGCACAGCGCCATACATCCCTGAACTTCGAGGGCCAATGGACACCTCCAACTTTGACGTGGATGATGATACCCTCAACCGTCCAgtgagggatagatgttgctattagagacttggcttggccctttgactata Alignment from Spaln_nt2Genome GACCACCTCCAGTTCCCTGCTGATGTGACT-GATGTGCCTGCTAGTGCCCAGGACCTGATCCGACAGCTGCTGTGCCGTCAGGAGGAGCGGCTGGGCCGTGGTGGGCTGGACGACTTCCGGAAGCACCCCTTCTTTGAAGGGGTCGATTGGGAGAGGCTTGCAACCAGCACAGCGCCATACATCCCTGAGCTTCGAGGGCCGATGGACACCTCCAACTTCGACGTGGATGATGATACCCTCAACCGTCCA ggttacttcatactaactggacccctgatgtgctcttgttctttggtcagGACCATCTCCAATTCCCTGCTGATGTGACTCGATGTGCCTGCTAGTGCCCAAGATCTGATCCGCCAGCTGCTATGCCGTCAAGAGGAGCAGCTGGGCCGTGGTGGGCTGGATGACTTCCGGAAGCACGCTTTCTTTGAAGGGGTTGATTGGGAGAGGCTTGCAACCAGCACAGCGCCATACATCCCTGAACTTCGAGGGCCAATGGACACCTCCAACTTTGACGTGGATGATGATACCCTCAACCGTCCAgtgagggatagatgttgctattagagacttggcttggccctttgactata Alignment from Pairagon GACCACCTCCAGTTCCCTGCTGATGTGACT-GATGTGCCTGCTAGTGCCCAGGACCTGATCCGACAGCTGCTGTGCCGTCAGGAGGAGCGGCTGGGCCGTGGTGGGCTGGACGACTTCCGGAAGCACCCCTTCTTTGAAGGGGTCGATTGGGAGAGGCTTGCAACCAGCACAGCGCCATACATCCCTGAGCTTCGAGGGCCGATGGACACCTCCAACTTCGACGTGGATGATGATACCCTCAACCGTCCA ggttacttcatactaactggacccctgatgtgctcttgttctttggtcagGACCATCTCCAATTCCCTGCTGATGTGACTCGATGTGCCTGCTAGTGCCCAAGATCTGATCCGCCAGCTGCTATGCCGTCAAGAGGAGCAGCTGGGCCGTGGTGGGCTGGATGACTTCCGGAAGCACGCTTTCTTTGAAGGGGTTGATTGGGAGAGGCTTGCAACCAGCACAGCGCCATACATCCCTGAACTTCGAGGGCCAATGGACACCTCCAACTTTGACGTGGATGATGATACCCTCAACCGTCCAgtgagggatagatgttgctattagagacttggcttggccctttgactata Alignment from Exonerate_protein2genome GACCACCTCCAGTTCCCTGCTGATGTGACT-GATGTGCCTGCTAGTGCCCAGGACCTGATCCGACAGCTGCTGTGCCGTCAGGAGGAGCGGCTGGGCCGTGGTGGGCTGGACGACTTCCGGAAGCACCCCTTCTTTGAAGGGGTCGATTGGGAGAGGCTTGCAACCAGCACAGCGCCATACATCCCTGAGCTTCGAGGGCCGATGGACACCTCCAACTTCGACGTGGATGATGATACCCTCAACCGTCCA ggttacttcatactaactggacccctgatgtgctcttgttctttggtcagGACCATCTCCAATTCCCTGCTGATGTGACTCGATGTGCCTGCTAGTGCCCAAGATCTGATCCGCCAGCTGCTATGCCGTCAAGAGGAGCAGCTGGGCCGTGGTGGGCTGGATGACTTCCGGAAGCACGCTTTCTTTGAAGGGGTTGATTGGGAGAGGCTTGCAACCAGCACAGCGCCATACATCCCTGAACTTCGAGGGCCAATGGACACCTCCAACTTTGACGTGGATGATGATACCCTCAACCGTCCAgtgagggatagatgttgctattagagacttggcttggccctttgactata Alignment from Exonerate_coding2genome GACCACCTCCAGTTCCCTGCTGATGTGACT-GATGTGCCTGCTAGTGCCCAGGACCTGATCCGACAGCTGCTGTGCCGTCAGGAGGAGCGGCTGGGCCGTGGTGGGCTGGACGACTTCCGGAAGCACCCCTTCTTTGAAGGGGTCGATTGGGAGAGGCTTGCAACCAGCACAGCGCCATACATCCCTGAGCTTCGAGGGCCGATGGACACCTCCAACTTCGACGTGGATGATGATACCCTCAACCGTCCA ggttacttcatactaactggacccctgatgtgctcttgttctttggtcagGACCATCTCCAATTCCCTGCTGATGTGACTCGATGTGCCTGCTAGTGCCCAAGATCTGATCCGCCAGCTGCTATGCCGTCAAGAGGAGCAGCTGGGCCGTGGTGGGCTGGATGACTTCCGGAAGCACGCTTTCTTTGAAGGGGTTGATTGGGAGAGGCTTGCAACCAGCACAGCGCCATACATCCCTGAACTTCGAGGGCCAATGGACACCTCCAACTTTGACGTGGATGATGATACCCTCAACCGTCCAgtgagggatagatgttgctattagagacttggcttggccctttgactata Alignment from GeneWise GACCACCTCCAGTTCCCTGCTGATGTG-ACTGATGTGCCTGCTAGTGCCCAGGACCTGATCCGACAGCTGCTGTGCCGTCAGGAGGAGCGGCTGGGCCGTGGTGGGCTGGACGACTTCCGGAAGCACCCCTTCTTTGAAGGGGTCGATTGGGAGAGGCTTGCAACCAGCACAGCGCCATACATCCCTGAGCTTCGAGGGCCGATGGACACCTCCAACTTCGACGTGGATGATGATACCCTCAACCGTCCA ggttacttcatactaactggacccctgatgtgctcttgttctttggtcagGACCATCTCCAATTCCCTGCTGATGTGACTCGATGTGCCTGCTAGTGCCCAAGATCTGATCCGCCAGCTGCTATGCCGTCAAGAGGAGCAGCTGGGCCGTGGTGGGCTGGATGACTTCCGGAAGCACGCTTTCTTTGAAGGGGTTGATTGGGAGAGGCTTGCAACCAGCACAGCGCCATACATCCCTGAACTTCGAGGGCCAATGGACACCTCCAACTTTGACGTGGATGATGATACCCTCAACCGTCCAgtgagggatagatgttgctattagagacttggcttggccctttgactata #### Cdc42bpg_ID1584_14 --> 0 - 0 Original Alignment CTCGAAGGCCAGGTGACCACCCTGAGTCAGGAGGTGACACGGCTCCAGGGACAATGTAAACAAGAA-TCTTCACAGGCCAAG ggtggacattccctagtcccacattcccacctacctctcattcactgcagCTTGAAGGCCAGGTGACCACTCTGAGTCAGGAGGTGACACGGCTGCAGGGACAATGTAAACAAGAACTCTTCACAGGCCAAGgtaagtttagtagccactctccactcagcacatccactctcctccctaga Alignment from CESAR CTCGAAGGCCAGGTGACCACCCTGAGTCAGGAGGTGACACGGCTCCAGGGACAATGTAAACAAGAA-TCTTCACAGGCCAAG ggtggacattccctagtcccacattcccacctacctctcattcactgcagCTTGAAGGCCAGGTGACCACTCTGAGTCAGGAGGTGACACGGCTGCAGGGACAATGTAAACAAGAACTCTTCACAGGCCAAGgtaagtttagtagccactctccactcagcacatccactctcctccctaga Alignment from Spaln_aa2Genome CTCGAAGGCCAGGTGACCACCCTGAGTCAGGAGGTGACACGGCTCCAGGGACAATGTAAACAAGAA-TCTTCACAGGCCAAG ggtggacattccctagtcccacattcccacctacctctcattcactgcagCTTGAAGGCCAGGTGACCACTCTGAGTCAGGAGGTGACACGGCTGCAGGGACAATGTAAACAAGAAcTCTTCACAGGCCAAGgtaagtttagtagccactctccactcagcacatccactctcctccctaga Alignment from Spaln_nt2Genome CTCGAAGGCCAGGTGACCACCCTGAGTCAGGAGGTGACACGGCTCCAGGGACAATGTAAACAAGAA-TCTTCACAGGCCAAG ggtggacattccctagtcccacattcccacctacctctcattcactgcagCTTGAAGGCCAGGTGACCACTCTGAGTCAGGAGGTGACACGGCTGCAGGGACAATGTAAACAAGAACTCTTCACAGGCCAAGgtaagtttagtagccactctccactcagcacatccactctcctccctaga Alignment from Pairagon CTCGAAGGCCAGGTGACCACCCTGAGTCAGGAGGTGACACGGCTCCAGGGACAATGTAAACAAGAA-TCTTCACAGGCCAAG ggtggacattccctagtcccacattcccacctacctctcattcactgcagCTTGAAGGCCAGGTGACCACTCTGAGTCAGGAGGTGACACGGCTGCAGGGACAATGTAAACAAGAACTCTTCACAGGCCAAGgtaagtttagtagccactctccactcagcacatccactctcctccctaga Alignment from Exonerate_protein2genome CTCGAAGGCCAGGTGACCACCCTGAGTCAGGAGGTGACACGGCTCCAGGGACAATGTAAACAAGAA-TCTTCACAGGCCAAG ggtggacattccctagtcccacattcccacctacctctcattcactgcagCTTGAAGGCCAGGTGACCACTCTGAGTCAGGAGGTGACACGGCTGCAGGGACAATGTAAACAAGAACTCTTCACAGGCCAAGgtaagtttagtagccactctccactcagcacatccactctcctccctaga Alignment from Exonerate_coding2genome CTCGAAGGCCAGGTGACCACCCTGAGTCAGGAGGTGACACGGCTCCAGGGACAATGTAAACAAGAA-TCTTCACAGGCCAAG ggtggacattccctagtcccacattcccacctacctctcattcactgcagCTTGAAGGCCAGGTGACCACTCTGAGTCAGGAGGTGACACGGCTGCAGGGACAATGTAAACAAGAACTCTTCACAGGCCAAGgtaagtttagtagccactctccactcagcacatccactctcctccctaga Alignment from GeneWise CTCGAAGGCCAGGTGACCACCCTGAGTCAGGAGGTGACACGGCTCCAGGGACAATGTAAACAAGAA-TCTTCACAGGCCAAG ggtggacattccctagtcccacattcccacctacctctcattcactgcagCTTGAAGGCCAGGTGACCACTCTGAGTCAGGAGGTGACACGGCTGCAGGGACAATGTAAACAAGAACTCTTCACAGGCCAAGgtaagtttagtagccactctccactcagcacatccactctcctccctaga #### Cdc42bpg_ID1585_15 --> 0 - 2 Original Alignment ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAG-GAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAgg aggccatggcttctcaaaccccagcctttctcagttttttcatgttttagACTGTCCATGCAGCCCCTGAGACAAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAACTGAGGAAGCGAAGTGGTGGCTCTGAGGGAGCAGCTGGAACATGCCTGCAGCCAAgggtacacacatggtaggtgcagccaggaggggacagggcagggtcagcctg Alignment from CESAR ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAG-GAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAgg aggccatggcttctcaaaccccagcctttctcagttttttcatgttttagACTGTCCATGCAGCCCCTGAGACAAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAACTGAGGAAGCGAAGTGGTGGCTCTGAGGGAGCAGCTGGAACATGCCTGCAGCCAAgggtacacacatggtaggtgcagccaggaggggacagggcagggtcagcctg Alignment from Spaln_aa2Genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAG-GAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccatggcttctcaaaccccagcctttctcagttttttcatgttttagACTGTCCATGCAGCCCCTGAGACAAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAACTGAGGAAGcGAAGTGGTGGCTCTGAGGGAGCAGCTGGAACATGCCTGCAGCCAAGGgtacacacatggtaggtgcagccaggaggggacagggcagggtcagcctg Alignment from Spaln_nt2Genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAG-GAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccatggcttctcaaaccccagcctttctcagttttttcatgttttagACTGTCCATGCAGCCCCTGAGACAAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAACTGAGGAAGCGAAGTGGTGGCTCTGAGGGAGCAGCTGGAACATGCCTGCAGCCAAGGgtacacacatggtaggtgcagccaggaggggacagggcagggtcagcctg Alignment from Pairagon ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAG-GAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccatggcttctcaaaccccagcctttctcagttttttcatgttttagACTGTCCATGCAGCCCCTGAGACAAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAACTGAGGAAGCGAAGTGGTGGCTCTGAGGGAGCAGCTGGAACATGCCTGCAGCCAAGGgtacacacatggtaggtgcagccaggaggggacagggcagggtcagcctg Alignment from Exonerate_protein2genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAG-GAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccatggcttctcaaaccccagcctttctcagttttttcatgttttagACTGTCCATGCAGCCCCTGAGACAAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAACTGAGGAAGCGAAGTGGTGGCTCTGAGGGAGCAGCTGGAACATGCCTGCAGCCAAGGgtacacacatggtaggtgcagccaggaggggacagggcagggtcagcctg Alignment from Exonerate_coding2genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGGAAG-GAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccatggcttctcaaaccccagcctttctcagttttttcatgttttagACTGTCCATGCAGCCCCTGAGACAAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAACTGAGGAAGCGAAGTGGTGGCTCTGAGGGAGCAGCTGGAACATGCCTGCAGCCAAGGgtacacacatggtaggtgcagccaggaggggacagggcagggtcagcctg Alignment from GeneWise ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAGCTGAGG-AAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccatggcttctcaaaccccagcctttctcagttttttcatgttttagACTGTCCATGCAGCCCCTGAGACAAATGGCATAGGATCTCCTGAGGGTCAGTCTCAAGAGGCCCAACTGAGGAAGCGAAGTGGTGGCTCTGAGGGAGCAGCTGGAACATGCCTGCAGCCAAGGgtacacacatggtaggtgcagccaggaggggacagggcagggtcagcctg #### Cdc42bpg_ID1586_16 --> 1 - 0 Original Alignment gATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAAC-CAGCGGCTGAGCCGGGAGCAGGAACGG cagggtcagcctgggggtcagctctatctgtgcttgcattctgtattaaggATCAGTGTTGGGAAAGAGGAGGTTCTATGCCGATTGCAGGAGGTAAACCCAGCAGCTGAGTCGGGAGCAGGAGTGGgtgagtaggaaagatgacaaagcacaggttagttgccaggtgggttagag Alignment from CESAR gATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAAC-CAGCGGCTGAGCCGGGAGCAGGAACGG cagggtcagcctgggggtcagctctatctgtgcttgcattctgtattaaggATCAGTGTTGGGAAAGAGGAGGTTCTATGCCGATTGCAGGAGGTAAACCCAGCAGCTGAGTCGGGAGCAGGAGTGGgtgagtaggaaagatgacaaagcacaggttagttgccaggtgggttagag Alignment from Spaln_aa2Genome GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAAC-CAGCGGCTGAGCCGGGAGCAGGAACGG cagggtcagcctgggggtcagctctatctgtgcttgcattctgtattaagGATCAGTGTTGGGAAAGAGGAGGTTCTATGCCGATTGCAGGAGGTAAACcCAGCAGCTGAGTCGGGAGCAGGAGTGGgtgagtaggaaagatgacaaagcacaggttagttgccaggtgggttagag Alignment from Spaln_nt2Genome GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAAC-CAGCGGCTGAGCCGGGAGCAGGAACGG cagggtcagcctgggggtcagctctatctgtgcttgcattctgtattaagGATCAGTGTTGGGAAAGAGGAGGTTCTATGCCGATTGCAGGAGGTAAACCCAGCAGCTGAGTCGGGAGCAGGAGTGGgtgagtaggaaagatgacaaagcacaggttagttgccaggtgggttagag Alignment from Pairagon GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGG-AAAACCAGCGGCTGAGCCGGGAGCAGGAACGG cagggtcagcctgggggtcagctctatctgtgcttgcattctgtattaagGATCAGTGTTGGGAAAGAGGAGGTTCTATGCCGATTGCAGGAGGTAAACCCAGCAGCTGAGTCGGGAGCAGGAGTGGgtgagtaggaaagatgacaaagcacaggttagttgccaggtgggttagag Alignment from Exonerate_protein2genome GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAAC-CAGCGGCTGAGCCGGGAGCAGGAACGG cagggtcagcctgggggtcagctctatctgtgcttgcattctgtattaagGATCAGTGTTGGGAAAGAGGAGGTTCTATGCCGATTGCAGGAGGTAAACCCAGCAGCTGAGTCGGGAGCAGGAGTGGgtgagtaggaaagatgacaaagcacaggttagttgccaggtgggttagag Alignment from Exonerate_coding2genome GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAAC-CAGCGGCTGAGCCGGGAGCAGGAACGG cagggtcagcctgggggtcagctctatctgtgcttgcattctgtattaagGATCAGTGTTGGGAAAGAGGAGGTTCTATGCCGATTGCAGGAGGTAAACCCAGCAGCTGAGTCGGGAGCAGGAGTGGgtgagtaggaaagatgacaaagcacaggttagttgccaggtgggttagag Alignment from GeneWise GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAG-GAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG cagggtcagcctgggggtcagctctatctgtgcttgcattctgtattaagGATCAGTGTTGGGAAAGAGGAGGTTCTATGCCGATTGCAGGAGGTAAACCCAGCAGCTGAGTCGGGAGCAGGAGTGGgtgagtaggaaagatgacaaagcacaggttagttgccaggtgggttagag #### Cdc42bpg_ID1587_17 --> 0 - 2 Original Alignment CTGGCAGGAGAGCTGGAACTGGAG-CTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCtg gggctacaagggccattgaggactaatcgtctcgttctttcctcctctagTTGGCAGGAGAGCTGGAACTGGAGCCTACAGAGCAAGCAACGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCtggtaagtatacacagccaggtggcacctctaatactgaggacccaggtcat Alignment from CESAR CTGGCAGGAGAGCTGGAACTGGAG-CTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCtg gggctacaagggccattgaggactaatcgtctcgttctttcctcctctagTTGGCAGGAGAGCTGGAACTGGAGCCTACAGAGCAAGCAACGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCtggtaagtatacacagccaggtggcacctctaatactgaggacccaggtcac Alignment from Spaln_aa2Genome CTGGCAGGAGAGCTGGAACTGGAG-CTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gggctacaagggccattgaggactaatcgtctcgttctttcctcctctagTTGGCAGGAGAGCTGGAACTGGAGcCTACAGAGCAAGCAACGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTGgtaagtatacacagccaggtggcacctctaatactgaggacccaggtcat Alignment from Spaln_nt2Genome CTGGCAGGAGAGCTGGAACTGGAG-CTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gggctacaagggccattgaggactaatcgtctcgttctttcctcctctagTTGGCAGGAGAGCTGGAACTGGAGCCTACAGAGCAAGCAACGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTGgtaagtatacacagccaggtggcacctctaatactgaggacccaggtcat Alignment from Pairagon CTGGCAGGAGAGCTGGAACTGGAG-CTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gggctacaagggccattgaggactaatcgtctcgttctttcctcctctagTTGGCAGGAGAGCTGGAACTGGAGCCTACAGAGCAAGCAACGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTGgtaagtatacacagccaggtggcacctctaatactgaggacccaggtcat Alignment from Exonerate_protein2genome CTGGCAGGAGAGCTGGAACTGGAG-CTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gggctacaagggccattgaggactaatcgtctcgttctttcctcctctagTTGGCAGGAGAGCTGGAACTGGAGCCTACAGAGCAAGCAACGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTGgtaagtatacacagccaggtggcacctctaatactgaggacccaggtcat Alignment from Exonerate_coding2genome CTGGCAGGAGAGCTGGAACTGGAG-CTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gggctacaagggccattgaggactaatcgtctcgttctttcctcctctagTTGGCAGGAGAGCTGGAACTGGAGCCTACAGAGCAAGCAACGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTGgtaagtatacacagccaggtggcacctctaatactgaggacccaggtcat Alignment from GeneWise CTGGCAGGAGAGCTGGAACTGGAG-CTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gggctacaagggccattgaggactaatcgtctcgttctttcctcctctagTTGGCAGGAGAGCTGGAACTGGAGCCTACAGAGCAAGCAACGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTGgtaagtatacacagccaggtggcacctctaatactgaggacccaggtcat #### Cdc42bpg_ID1589_19 --> 0 - 2 Original Alignment GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAGATGGAGGCCTCA-GCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGTGCCAAGCAGAGTCTGCAGGAGCAGCTGACGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAAcg gaagggagggaatcgctgaaatcttacagtctctcctctcccatctctagGATCACCAGTGGAAAGCTCGGAGGCTGCAGAAGATGGAGGCCTTACGCCCGGCTAGCACTTCAGTCAGCGCTGGAAGCTGAGATCCGTGCCAAGCAAAGTCTGCAGGAGCAGCTTATGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAAtggtcagtccatgggcaggctggagtgaaatgccttccaaggcctggggtgt Alignment from CESAR GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAGATGGAGGCCTCA-GCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGTGCCAAGCAGAGTCTGCAGGAGCAGCTGACGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAAcg gaagggagggaatcgctgaaatcttacagtctctcctctcccatctctagGATCACCAGTGGAAAGCTCGGAGGCTGCAGAAGATGGAGGCCTTACGCCCGGCTAGCACTTCAGTCAGCGCTGGAAGCTGAGATCCGTGCCAAGCAAAGTCTGCAGGAGCAGCTTATGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAAtggtcagtccatgggcaggctggagtgaaatgccttccaaggcctggggtga Alignment from Spaln_aa2Genome GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAGATGGAGGCCTCA-GCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGTGCCAAGCAGAGTCTGCAGGAGCAGCTGACGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAACG gaagggagggaatcgctgaaatcttacagtctctcctctcccatctctagGATCACCAGTGGAAAGCTCGGAGGCTGCAGAAGATGGAGGCCTTAcGCCCGGCTAGCACTTCAGTCAGCGCTGGAAGCTGAGATCCGTGCCAAGCAAAGTCTGCAGGAGCAGCTTATGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAATGgtcagtccatgggcaggctggagtgaaatgccttccaaggcctggggtgt Alignment from Spaln_nt2Genome GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAGATGGAGGCCTCA-GCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGTGCCAAGCAGAGTCTGCAGGAGCAGCTGACGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAACG gaagggagggaatcgctgaaatcttacagtctctcctctcccatctctagGATCACCAGTGGAAAGCTCGGAGGCTGCAGAAGATGGAGGCCTTACGCCCGGCTAGCACTTCAGTCAGCGCTGGAAGCTGAGATCCGTGCCAAGCAAAGTCTGCAGGAGCAGCTTATGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAATGgtcagtccatgggcaggctggagtgaaatgccttccaaggcctggggtgt Alignment from Pairagon GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAGATGGAGGCCTCA-GCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGTGCCAAGCAGAGTCTGCAGGAGCAGCTGACGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAACG gaagggagggaatcgctgaaatcttacagtctctcctctcccatctctagGATCACCAGTGGAAAGCTCGGAGGCTGCAGAAGATGGAGGCCTTACGCCCGGCTAGCACTTCAGTCAGCGCTGGAAGCTGAGATCCGTGCCAAGCAAAGTCTGCAGGAGCAGCTTATGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAATGgtcagtccatgggcaggctggagtgaaatgccttccaaggcctggggtgt Alignment from Exonerate_protein2genome GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAGATGGAGGCC-TCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGTGCCAAGCAGAGTCTGCAGGAGCAGCTGACGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAACG gaagggagggaatcgctgaaatcttacagtctctcctctcccatctctagGATCACCAGTGGAAAGCTCGGAGGCTGCAGAAGATGGAGGCCTTACGCCCGGCTAGCACTTCAGTCAGCGCTGGAAGCTGAGATCCGTGCCAAGCAAAGTCTGCAGGAGCAGCTTATGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAATGgtcagtccatgggcaggctggagtgaaatgccttccaaggcctggggtgt Alignment from Exonerate_coding2genome GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAGATGGAGGCC-TCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGTGCCAAGCAGAGTCTGCAGGAGCAGCTGACGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAACG gaagggagggaatcgctgaaatcttacagtctctcctctcccatctctagGATCACCAGTGGAAAGCTCGGAGGCTGCAGAAGATGGAGGCCTTACGCCCGGCTAGCACTTCAGTCAGCGCTGGAAGCTGAGATCCGTGCCAAGCAAAGTCTGCAGGAGCAGCTTATGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAATGgtcagtccatgggcaggctggagtgaaatgccttccaaggcctggggtgt Alignment from GeneWise GATCACCAGTGGAAGGCTCGGAGGCTGCAGAAGATGGAGGCC-TCAGCCCGGCTAGAGCTTCAGTCAGCACTGGAAGCTGAGATCCGTGCCAAGCAGAGTCTGCAGGAGCAGCTGACGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAACG gaagggagggaatcgctgaaatcttacagtctctcctctcccatctctagGATCACCAGTGGAAAGCTCGGAGGCTGCAGAAGATGGAGGCCTTACGCCCGGCTAGCACTTCAGTCAGCGCTGGAAGCTGAGATCCGTGCCAAGCAAAGTCTGCAGGAGCAGCTTATGCAGGTGCAGGAGGCTCAGCGGCAGGCTGAATGgtcagtccatgggcaggctggagtgaaatgccttccaaggcctggggtgt #### Cdc42bpg_ID1594_24 --> 0 - 1 Original Alignment CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCTACC-AAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACa tgagatggccagggttccagggggtcttgtgcgtgtttgtgttccctcagCCTGGTTCACACACCCTGCGACCCCGGAGTTTTCCATCTCCTACACAAGTGTCTCCGCTGCACCTCGCTGATGTTGGGCCTTGGCCGTCAGGGCCTGGGCTGTGACagtaagaacatgtgtccttgattctctctcatcataccttaacatacccag Alignment from CESAR CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCTACC-AAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACa tgagatggccagggttccagggggtcttgtgcgtgtttgtgttccctcagCCTGGTTCACACACCCTGCGACCCCGGAGTTTTCCATCTCCTACACAAGTGTCTCCGCTGCACCTCGCTGATGTTGGGCCTTGGCCGTCAGGGCCTGGGCTGTGACagtaagaacatgtgtccttgattctctctcatcataccttaacatacccag Alignment from Spaln_aa2Genome CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCTACC-AAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACA tgagatggccagggttccagggggtcttgtgcgtgtttgtgttccctcagCCTGGTTCACACACCCTGCGACCCCGGAGTTTTCCATCTCCTACAcAAGTGTCTCCGCTGCACCTCGCTGATGTTGGGCCTTGGCCGTCAGGGCCTGGGCTGTGACAgtaagaacatgtgtccttgattctctctcatcataccttaacatacccag Alignment from Spaln_nt2Genome CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCTAC-CAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACA tgagatggccagggttccagggggtcttgtgcgtgtttgtgttccctcagCCTGGTTCACACACCCTGCGACCCCGGAGTTTTCCATCTCCTACACAAGTGTCTCCGCTGCACCTCGCTGATGTTGGGCCTTGGCCGTCAGGGCCTGGGCTGTGACAgtaagaacatgtgtccttgattctctctcatcataccttaacatacccag Alignment from Pairagon CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCTAC-CAAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACA tgagatggccagggttccagggggtcttgtgcgtgtttgtgttccctcagCCTGGTTCACACACCCTGCGACCCCGGAGTTTTCCATCTCCTACACAAGTGTCTCCGCTGCACCTCGCTGATGTTGGGCCTTGGCCGTCAGGGCCTGGGCTGTGACAgtaagaacatgtgtccttgattctctctcatcataccttaacatacccag Alignment from Exonerate_protein2genome CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCTACC-AAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACA tgagatggccagggttccagggggtcttgtgcgtgtttgtgttccctcagCCTGGTTCACACACCCTGCGACCCCGGAGTTTTCCATCTCCTACACAAGTGTCTCCGCTGCACCTCGCTGATGTTGGGCCTTGGCCGTCAGGGCCTGGGCTGTGACAgtaagaacatgtgtccttgattctctctcatcataccttaacatacccag Alignment from Exonerate_coding2genome CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCTACC-AAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACA tgagatggccagggttccagggggtcttgtgcgtgtttgtgttccctcagCCTGGTTCACACACCCTGCGACCCCGGAGTTTTCCATCTCCTACACAAGTGTCTCCGCTGCACCTCGCTGATGTTGGGCCTTGGCCGTCAGGGCCTGGGCTGTGACAgtaagaacatgtgtccttgattctctctcatcataccttaacatacccag Alignment from GeneWise CCCGGCTCACACACCCTGCGTCCCCGGAGTTTTCCATCCCCTACC-AAGTGTCTCCGCTGCACCTCGCTGATGCTGGGCCTGGGCCGCCAGGGCCTGGGCTGTGACA tgagatggccagggttccagggggtcttgtgcgtgtttgtgttccctcagCCTGGTTCACACACCCTGCGACCCCGGAGTTTTCCATCTCCTACACAAGTGTCTCCGCTGCACCTCGCTGATGTTGGGCCTTGGCCGTCAGGGCCTGGGCTGTGACAgtaagaacatgtgtccttgattctctctcatcataccttaacatacccag #### Cdk2ap2_ID298_2 --> 2 - 0 Original Alignment ccGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTT-GGTCCGCCCTCCATGGGGTATGTACAG ctgtgatgaggcccttgtcacaccctggttgccctccttcacttgtgtagccGGAAGTGTCCCATTGCCATCAGGCTCAGTACCAGGAGCTGCTGCACCTTTCAGACCACTATTTAACGACTTTCGGTCCACCCTCCATGGGTTATGTACAGgtaagtctgaccaagagcttgctcatggctgagggcaggggctcccatca Alignment from CESAR ccGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTT-GGTCCGCCCTCCATGGGGTATGTACAG ctgtgatgaggcccttgtcacaccctggttgccctccttcacttgtgtagccGGAAGTGTCCCATTGCCATCAGGCTCAGTACCAGGAGCTGCTGCACCTTTCAGACCACTATTTAACGACTTTCGGTCCACCCTCCATGGGTTATGTACAGgtaagtctgaccaagagcttgctcatggctgagggcaggggctcccatca Alignment from Spaln_aa2Genome CCGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTT-GGTCCGCCCTCCATGGGGTATGTACAG ctgtgatgaggcccttgtcacaccctggttgccctccttcacttgtgtagCCGGAAGTGTCCCATTGCCATCAGGCTCAGTACCAGGAGCTGCTGCACCTTTCAGACCACTATTTAACGACTTTcGGTCCACCCTCCATGGGTTATGTACAGgtaagtctgaccaagagcttgctcatggctgagggcaggggctcccatca Alignment from Spaln_nt2Genome CCGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTT-GGTCCGCCCTCCATGGGGTATGTACAG ctgtgatgaggcccttgtcacaccctggttgccctccttcacttgtgtagCCGGAAGTGTCCCATTGCCATCAGGCTCAGTACCAGGAGCTGCTGCACCTTTCAGACCACTATTTAACGACTTTCGGTCCACCCTCCATGGGTTATGTACAGgtaagtctgaccaagagcttgctcatggctgagggcaggggctcccatca Alignment from Pairagon CCGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTT-GGTCCGCCCTCCATGGGGTATGTACAG ctgtgatgaggcccttgtcacaccctggttgccctccttcacttgtgtagCCGGAAGTGTCCCATTGCCATCAGGCTCAGTACCAGGAGCTGCTGCACCTTTCAGACCACTATTTAACGACTTTCGGTCCACCCTCCATGGGTTATGTACAGgtaagtctgaccaagagcttgctcatggctgagggcaggggctcccatca Alignment from Exonerate_protein2genome CCGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGAC-TTTGGTCCGCCCTCCATGGGGTATGTACAG ctgtgatgaggcccttgtcacaccctggttgccctccttcacttgtgtagCCGGAAGTGTCCCATTGCCATCAGGCTCAGTACCAGGAGCTGCTGCACCTTTCAGACCACTATTTAACGACTTTCGGTCCACCCTCCATGGGTTATGTACAGgtaagtctgaccaagagcttgctcatggctgagggcaggggctcccatca Alignment from Exonerate_coding2genome CCGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGAC-TTTGGTCCGCCCTCCATGGGGTATGTACAG ctgtgatgaggcccttgtcacaccctggttgccctccttcacttgtgtagCCGGAAGTGTCCCATTGCCATCAGGCTCAGTACCAGGAGCTGCTGCACCTTTCAGACCACTATTTAACGACTTTCGGTCCACCCTCCATGGGTTATGTACAGgtaagtctgaccaagagcttgctcatggctgagggcaggggctcccatca Alignment from GeneWise CCGGGAGTGTCCCATCGCCATCGGGCTCAGTGCCAGGAGCTGCCGCACCTTTCAGACCGCTGTTTAACGACTTT-GGTCCGCCCTCCATGGGGTATGTACAG ctgtgatgaggcccttgtcacaccctggttgccctccttcacttgtgtagCCGGAAGTGTCCCATTGCCATCAGGCTCAGTACCAGGAGCTGCTGCACCTTTCAGACCACTATTTAACGACTTTCGGTCCACCCTCCATGGGTTATGTACAGgtaagtctgaccaagagcttgctcatggctgagggcaggggctcccatca #### Cep78_ID3983_3 --> 0 - 1 Original Alignment GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCA-AATTGTCCAATTGGAGATGGAGGTTTAGAAa gttttcagtggggagatactcaataccttaacctctgactttccttgtagGGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCACAATTGCCCAATTGGAGATGGAGGTTTAGAAagtaatttgagtaatttaacactcatcttggtagggtggtcttatgtctca Alignment from CESAR GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCA-AATTGTCCAATTGGAGATGGAGGTTTAGAAa gttttcagtggggagatactcaataccttaacctctgactttccttgtagGGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCACAATTGCCCAATTGGAGATGGAGGTTTAGAAagtaatttgagtaatttaacactcatcttggtagggtggtcttatgtctca Alignment from Spaln_aa2Genome GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCA-AATTGTCCAATTGGAGATGGAGGTTTAGAAA gttttcagtggggagatactcaataccttaacctctgactttccttgtagGGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCAcAATTGCCCAATTGGAGATGGAGGTTTAGAAAgtaatttgagtaatttaacactcatcttggtagggtggtcttatgtctca Alignment from Spaln_nt2Genome GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCA-AATTGTCCAATTGGAGATGGAGGTTTAGAAA gttttcagtggggagatactcaataccttaacctctgactttccttgtagGGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCACAATTGCCCAATTGGAGATGGAGGTTTAGAAAgtaatttgagtaatttaacactcatcttggtagggtggtcttatgtctca Alignment from Pairagon GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCA-AATTGTCCAATTGGAGATGGAGGTTTAGAAA gttttcagtggggagatactcaataccttaacctctgactttccttgtagGGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCACAATTGCCCAATTGGAGATGGAGGTTTAGAAAgtaatttgagtaatttaacactcatcttggtagggtggtcttatgtctca Alignment from Exonerate_protein2genome GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCA-AATTGTCCAATTGGAGATGGAGGTTTAGAAA gttttcagtggggagatactcaataccttaacctctgactttccttgtagGGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCACAATTGCCCAATTGGAGATGGAGGTTTAGAAAgtaatttgagtaatttaacactcatcttggtagggtggtcttatgtctca Alignment from Exonerate_coding2genome GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCA-AATTGTCCAATTGGAGATGGAGGTTTAGAAA gttttcagtggggagatactcaataccttaacctctgactttccttgtagGGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCACAATTGCCCAATTGGAGATGGAGGTTTAGAAAgtaatttgagtaatttaacactcatcttggtagggtggtcttatgtctca Alignment from GeneWise GGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTT-GCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA gttttcagtggggagatactcaataccttaacctctgactttccttgtagGGACTGAGTAAATCAACCTCTTTGGTGCACTTGTCTCTTGCACAATTGCCCAATTGGAGATGGAGGTTTAGAAAgtaatttgagtaatttaacactcatcttggtagggtggtcttatgtctca #### Cfl1_ID1061_3 --> 1 - 1 Original Alignment gGCCCCCGAGAATGCACCCCTCAAGAGCAAAATGATCTATGCC-AGCTCCAAGGATGCCATCAAGAAGAAGCTGACAg ttaggactattctggatgtagctgcagcgctgtgctgtgctccccttcaggGCCCCTGAAAATGCACCCCTAAAGAGCAAAATGATCTATGCACAGCTCCAAGGATGCCATCAAGAGGAAGCTGACAggtaggtattcccccttcagcaaaaacaattggtgtagtctcctgctagcc Alignment from CESAR gGCCCCCGAGAATGCACCCCTCAAGAGCAAAATGATCTATGCC-AGCTCCAAGGATGCCATCAAGAAGAAGCTGACAg ttaggactattctggatgtagctgcagcgctgtgctgtgctccccttcaggGCCCCTGAAAATGCACCCCTAAAGAGCAAAATGATCTATGCACAGCTCCAAGGATGCCATCAAGAGGAAGCTGACAggtaggtattcccccttcagcaaaaacaattggtgtagtctcctgctagcc Alignment from Spaln_aa2Genome GGCCCCCGAGAATGCACCCCTCAAGAGCAAAATGATCTATGCC-AGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG ttaggactattctggatgtagctgcagcgctgtgctgtgctccccttcagGGCCCCTGAAAATGCACCCCTAAAGAGCAAAATGATCTATGCAcAGCTCCAAGGATGCCATCAAGAGGAAGCTGACAGgtaggtattcccccttcagcaaaaacaattggtgtagtctcctgctagcc Alignment from Spaln_nt2Genome GGCCCCCGAGAATGCACCCCTCAAGAGCAAAATGATCTATGC-CAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG ttaggactattctggatgtagctgcagcgctgtgctgtgctccccttcagGGCCCCTGAAAATGCACCCCTAAAGAGCAAAATGATCTATGCACAGCTCCAAGGATGCCATCAAGAGGAAGCTGACAGgtaggtattcccccttcagcaaaaacaattggtgtagtctcctgctagcc Alignment from Pairagon GGCCCCCGAGAATGCACCCCTCAAGAGCAAAATGATCTATGC-CAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG ttaggactattctggatgtagctgcagcgctgtgctgtgctccccttcagGGCCCCTGAAAATGCACCCCTAAAGAGCAAAATGATCTATGCACAGCTCCAAGGATGCCATCAAGAGGAAGCTGACAGgtaggtattcccccttcagcaaaaacaattggtgtagtctcctgctagcc Alignment from Exonerate_protein2genome GGCCCCCGAGAATGCACCCCTCAAGAGCAAAATGATCTATGCC-AGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG ttaggactattctggatgtagctgcagcgctgtgctgtgctccccttcagGGCCCCTGAAAATGCACCCCTAAAGAGCAAAATGATCTATGCACAGCTCCAAGGATGCCATCAAGAGGAAGCTGACAGgtaggtattcccccttcagcaaaaacaattggtgtagtctcctgctagcc Alignment from Exonerate_coding2genome GGCCCCCGAGAATGCACCCCTCAAGAGCAAAATGATCTATGCC-AGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG ttaggactattctggatgtagctgcagcgctgtgctgtgctccccttcagGGCCCCTGAAAATGCACCCCTAAAGAGCAAAATGATCTATGCACAGCTCCAAGGATGCCATCAAGAGGAAGCTGACAGgtaggtattcccccttcagcaaaaacaattggtgtagtctcctgctagcc Alignment from GeneWise GGCCCCCGAGAATGCACCCCTCAAGAGCAAAATGATCTATGCC-AGCTCCAAGGATGCCATCAAGAAGAAGCTGACA- ttaggactattctggatgtagctgcagcgctgtgctgtgctccccttcagGGCCCCTGAAAATGCACCCCTAAAGAGCAAAATGATCTATGCACAGCTCCAAGGATGCCATCAAGAGGAAGCTGACAGgtaggtattcccccttcagcaaaaacaattggtgtagtctcctgctagcc #### Chuk_ID8921_7 --> 0 - 2 Original Alignment GCCCCAGAGCTCTTTGAAAATAAGCCGTACACA-GCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCtg ttggttcttaatacaatttctattttaatcttgtctttccaccaccccagGCCCCAGACCTCTTTGAAAATAAGCCATACACACGCCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCtggtgagtaatgatgagagctttagcgtagttcctggtagtggaagcagttc Alignment from CESAR GCCCCAGAGCTCTTTGAAAATAAGCCGTACACA-GCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCtg ttggttcttaatacaatttctattttaatcttgtctttccaccaccccagGCCCCAGACCTCTTTGAAAATAAGCCATACACACGCCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCtggtgagtaatgatgagagctttagcgtagttcctggtagtggaagcagttc Alignment from Spaln_aa2Genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACA-GCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttggttcttaatacaatttctattttaatcttgtctttccaccaccccagGCCCCAGACCTCTTTGAAAATAAGCCATACACAcGCCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtgagtaatgatgagagctttagcgtagttcctggtagtggaagcagttc Alignment from Spaln_nt2Genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACA-GCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttggttcttaatacaatttctattttaatcttgtctttccaccaccccagGCCCCAGACCTCTTTGAAAATAAGCCATACACACGCCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtgagtaatgatgagagctttagcgtagttcctggtagtggaagcagttc Alignment from Pairagon GCCCCAGAGCTCTTTGAAAATAAGCCGTACACA-GCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttggttcttaatacaatttctattttaatcttgtctttccaccaccccagGCCCCAGACCTCTTTGAAAATAAGCCATACACACGCCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtgagtaatgatgagagctttagcgtagttcctggtagtggaagcagttc Alignment from Exonerate_protein2genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACA-GCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttggttcttaatacaatttctattttaatcttgtctttccaccaccccagGCCCCAGACCTCTTTGAAAATAAGCCATACACACGCCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtgagtaatgatgagagctttagcgtagttcctggtagtggaagcagttc Alignment from Exonerate_coding2genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACA-GCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttggttcttaatacaatttctattttaatcttgtctttccaccaccccagGCCCCAGACCTCTTTGAAAATAAGCCATACACACGCCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtgagtaatgatgagagctttagcgtagttcctggtagtggaagcagttc Alignment from GeneWise GCCCCAGAGCTCTTTGAAAATAAGCCGTACACA-GCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttggttcttaatacaatttctattttaatcttgtctttccaccaccccagGCCCCAGACCTCTTTGAAAATAAGCCATACACACGCCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtgagtaatgatgagagctttagcgtagttcctggtagtggaagcagttc #### Col17a1_ID10271_51 --> 2 - 1 Original Alignment gtGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGA-GAGAAAGGAGACAAAg ctttagctcttactcattcttggatgtcttcttatgatttttttttctaggtGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCAACCTGGTCCCAGAGGGAACAAAGGACGAGAAGGGGGACAAAggtgagtagtggtgtgtgattgctggggtgctggggctaaggttcagagaa Alignment from CESAR gtGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGA-GAGAAAGGAGACAAAg ctttagctcttactcattcttggatgtcttcttatgatttttttttctaggtGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCAACCTGGTCCCAGAGGGAACAAAGGACGAGAAGGGGGACAAAggtgagtagtggtgtgtgattgctggggtgctggggctaaggttcagagaa Alignment from Spaln_aa2Genome GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGA-GAGAAAGGAGACAAAG ctttagctcttactcattcttggatgtcttcttatgatttttttttctagGTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCAACCTGGTCCCAGAGGGAACAAAGGAcGAGAAGGGGGACAAAGgtgagtagtggtgtgtgattgctggggtgctggggctaaggttcagagaa Alignment from Spaln_nt2Genome GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGA-GAGAAAGGAGACAAAG ctttagctcttactcattcttggatgtcttcttatgatttttttttctagGTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCAACCTGGTCCCAGAGGGAACAAAGGACGAGAAGGGGGACAAAGgtgagtagtggtgtgtgattgctggggtgctggggctaaggttcagagaa Alignment from Pairagon GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGA-GAGAAAGGAGACAAAG ctttagctcttactcattcttggatgtcttcttatgatttttttttctagGTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCAACCTGGTCCCAGAGGGAACAAAGGACGAGAAGGGGGACAAAGgtgagtagtggtgtgtgattgctggggtgctggggctaaggttcagagaa Alignment from Exonerate_protein2genome GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGA-GAGAAAGGAGACAAAG ctttagctcttactcattcttggatgtcttcttatgatttttttttctagGTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCAACCTGGTCCCAGAGGGAACAAAGGACGAGAAGGGGGACAAAGgtgagtagtggtgtgtgattgctggggtgctggggctaaggttcagagaa Alignment from Exonerate_coding2genome GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGA-GAGAAAGGAGACAAAG ctttagctcttactcattcttggatgtcttcttatgatttttttttctagGTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCAACCTGGTCCCAGAGGGAACAAAGGACGAGAAGGGGGACAAAGgtgagtagtggtgtgtgattgctggggtgctggggctaaggttcagagaa Alignment from GeneWise GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGA-GAGAAAGGAGACAAAG ctttagctcttactcattcttggatgtcttcttatgatttttttttctagGTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCAACCTGGTCCCAGAGGGAACAAAGGACGAGAAGGGGGACAAAGgtgagtagtggtgtgtgattgctggggtgctggggctaaggttcagagaa #### Col17a1_ID10272_50 --> 2 - 1 Original Alignment ccTACGGCACTATCCCGGGACCACCTGGGCAG-AAGGGAGATGTGGGAACCCCAGGCCCCAAAg tcctgagccttgggctctggtcttaaggcctttacttttttatcttccagccTATGGCACTATCCCAGGACCACCTGGCCAGCAAAGGAGATGTAGGGACCCCAGGCCCCAAAggtaagtgagcataatccataggttaattgataatgccctagtaccctact Alignment from CESAR ccTACGGCACTATCCCGGGACCACCTGGGCAG-AAGGGAGATGTGGGAACCCCAGGCCCCAAAg tcctgagccttgggctctggtcttaaggcctttacttttttatcttccagccTATGGCACTATCCCAGGACCACCTGGCCAGCAAAGGAGATGTAGGGACCCCAGGCCCCAAAggtaagtgagcataatccataggttaattgataatgccctagtaccctact Alignment from Spaln_aa2Genome CCTACGGCACTATCCCGGGACCACCTGGGCAG-AAGGGAGATGTGGGAACCCCAGGCCCCAAAG tcctgagccttgggctctggtcttaaggcctttacttttttatcttccagCCTATGGCACTATCCCAGGACCACCTGGCCAGcAAAGGAGATGTAGGGACCCCAGGCCCCAAAGgtaagtgagcataatccataggttaattgataatgccctagtaccctact Alignment from Spaln_nt2Genome CCTACGGCACTATCCCGGGACCACCTGGGCAG-AAGGGAGATGTGGGAACCCCAGGCCCCAAAG tcctgagccttgggctctggtcttaaggcctttacttttttatcttccagCCTATGGCACTATCCCAGGACCACCTGGCCAGCAAAGGAGATGTAGGGACCCCAGGCCCCAAAGgtaagtgagcataatccataggttaattgataatgccctagtaccctact Alignment from Pairagon CCTACGGCACTATCCCGGGACCACCTGGGCAG-AAGGGAGATGTGGGAACCCCAGGCCCCAAAG tcctgagccttgggctctggtcttaaggcctttacttttttatcttccagCCTATGGCACTATCCCAGGACCACCTGGCCAGCAAAGGAGATGTAGGGACCCCAGGCCCCAAAGgtaagtgagcataatccataggttaattgataatgccctagtaccctact Alignment from Exonerate_protein2genome CCTACGGCACTATCCCGGGACCACCTGGGCAG-AAGGGAGATGTGGGAACCCCAGGCCCCAAAG tcctgagccttgggctctggtcttaaggcctttacttttttatcttccagCCTATGGCACTATCCCAGGACCACCTGGCCAGCAAAGGAGATGTAGGGACCCCAGGCCCCAAAGgtaagtgagcataatccataggttaattgataatgccctagtaccctact Alignment from Exonerate_coding2genome CCTACGGCACTATCCCGGGACCACCTGGGCAG-AAGGGAGATGTGGGAACCCCAGGCCCCAAAG tcctgagccttgggctctggtcttaaggcctttacttttttatcttccagCCTATGGCACTATCCCAGGACCACCTGGCCAGCAAAGGAGATGTAGGGACCCCAGGCCCCAAAGgtaagtgagcataatccataggttaattgataatgccctagtaccctact Alignment from GeneWise CCTACGGCACTATCCCGGGACCACCTGGGCAG-AAGGGAGATGTGGGAACCCCAGGCCCCAAAG tcctgagccttgggctctggtcttaaggcctttacttttttatcttccagCCTATGGCACTATCCCAGGACCACCTGGCCAGCAAAGGAGATGTAGGGACCCCAGGCCCCAAAGgtaagtgagcataatccataggttaattgataatgccctagtaccctact #### Col17a1_ID10273_49 --> 2 - 1 Original Alignment gtCAGGGTCTGCTACAAGGGATGGCCTACACTGTCCAGGGCCCACCTGGGCCCCAAGGCCCTCCTGGCATCAGCAGGGTCTTCTCA-GCCTACAGCAACGTGACACAAGACCTCATGGACTTCTTCCAAa tatgctgcttcttacactgcttcctacatcactgcctggtttctccacaggtCAGGGTCTGCTACAAGGGATGGCGTACACTGTCCAGGGCCCGCCTGGGCCTCAAGGCCCTCCTGGCATTAGCAGGGTCTTCTCACGCCTATAGCAATGTAACACAAGACCTCATGGACTTCTTCCAAagtaagtatagctccatgtgttgcccagtgttggcctgtacatctggttcc Alignment from CESAR gtCAGGGTCTGCTACAAGGGATGGCCTACACTGTCCAGGGCCCACCTGGGCCCCAAGGCCCTCCTGGCATCAGCAGGGTCTTCTCA-GCCTACAGCAACGTGACACAAGACCTCATGGACTTCTTCCAAa tatgctgcttcttacactgcttcctacatcactgcctggtttctccacaggtCAGGGTCTGCTACAAGGGATGGCGTACACTGTCCAGGGCCCGCCTGGGCCTCAAGGCCCTCCTGGCATTAGCAGGGTCTTCTCACGCCTATAGCAATGTAACACAAGACCTCATGGACTTCTTCCAAagtaagtatagctccatgtgttgcccagtgttggcctgtacatctggttcc Alignment from Spaln_aa2Genome GTCAGGGTCTGCTACAAGGGATGGCCTACACTGTCCAGGGCCCACCTGGGCCCCAAGGCCCTCCTGGCATCAGCAGGGTCTTCTCA-GCCTACAGCAACGTGACACAAGACCTCATGGACTTCTTCCAAA tatgctgcttcttacactgcttcctacatcactgcctggtttctccacagGTCAGGGTCTGCTACAAGGGATGGCGTACACTGTCCAGGGCCCGCCTGGGCCTCAAGGCCCTCCTGGCATTAGCAGGGTCTTCTCAcGCCTATAGCAATGTAACACAAGACCTCATGGACTTCTTCCAAAgtaagtatagctccatgtgttgcccagtgttggcctgtacatctggttcc Alignment from Spaln_nt2Genome GTCAGGGTCTGCTACAAGGGATGGCCTACACTGTCCAGGGCCCACCTGGGCCCCAAGGCCCTCCTGGCATCAGCAGGGTCTTCTCA-GCCTACAGCAACGTGACACAAGACCTCATGGACTTCTTCCAAA tatgctgcttcttacactgcttcctacatcactgcctggtttctccacagGTCAGGGTCTGCTACAAGGGATGGCGTACACTGTCCAGGGCCCGCCTGGGCCTCAAGGCCCTCCTGGCATTAGCAGGGTCTTCTCACGCCTATAGCAATGTAACACAAGACCTCATGGACTTCTTCCAAAgtaagtatagctccatgtgttgcccagtgttggcctgtacatctggttcc Alignment from Pairagon GTCAGGGTCTGCTACAAGGGATGGCCTACACTGTCCAGGGCCCACCTGGGCCCCAAGGCCCTCCTGGCATCAGCAGGGTCTTCTCA-GCCTACAGCAACGTGACACAAGACCTCATGGACTTCTTCCAAA tatgctgcttcttacactgcttcctacatcactgcctggtttctccacagGTCAGGGTCTGCTACAAGGGATGGCGTACACTGTCCAGGGCCCGCCTGGGCCTCAAGGCCCTCCTGGCATTAGCAGGGTCTTCTCACGCCTATAGCAATGTAACACAAGACCTCATGGACTTCTTCCAAAgtaagtatagctccatgtgttgcccagtgttggcctgtacatctggttcc Alignment from Exonerate_protein2genome GTCAGGGTCTGCTACAAGGGATGGCCTACACTGTCCAGGGCCCACCTGGGCCCCAAGGCCCTCCTGGCATCAGCAGGGTCTTCTCA-GCCTACAGCAACGTGACACAAGACCTCATGGACTTCTTCCAAA tatgctgcttcttacactgcttcctacatcactgcctggtttctccacagGTCAGGGTCTGCTACAAGGGATGGCGTACACTGTCCAGGGCCCGCCTGGGCCTCAAGGCCCTCCTGGCATTAGCAGGGTCTTCTCACGCCTATAGCAATGTAACACAAGACCTCATGGACTTCTTCCAAAgtaagtatagctccatgtgttgcccagtgttggcctgtacatctggttcc Alignment from Exonerate_coding2genome GTCAGGGTCTGCTACAAGGGATGGCCTACACTGTCCAGGGCCCACCTGGGCCCCAAGGCCCTCCTGGCATCAGCAGGGTCTTCTCA-GCCTACAGCAACGTGACACAAGACCTCATGGACTTCTTCCAAA tatgctgcttcttacactgcttcctacatcactgcctggtttctccacagGTCAGGGTCTGCTACAAGGGATGGCGTACACTGTCCAGGGCCCGCCTGGGCCTCAAGGCCCTCCTGGCATTAGCAGGGTCTTCTCACGCCTATAGCAATGTAACACAAGACCTCATGGACTTCTTCCAAAgtaagtatagctccatgtgttgcccagtgttggcctgtacatctggttcc Alignment from GeneWise GTCAGGGTCTGCTACAAGGGATGGCCTACACTGTCCAGGGCCCACCTGGGCCCCAAGGCCCTCCTGGCATCAGCAGGGTCTTC-TCAGCCTACAGCAACGTGACACAAGACCTCATGGACTTCTTCCAAA tatgctgcttcttacactgcttcctacatcactgcctggtttctccacagGTCAGGGTCTGCTACAAGGGATGGCGTACACTGTCCAGGGCCCGCCTGGGCCTCAAGGCCCTCCTGGCATTAGCAGGGTCTTCTCACGCCTATAGCAATGTAACACAAGACCTCATGGACTTCTTCCAAAgtaagtatagctccatgtgttgcccagtgttggcctgtacatctggttcc #### Col17a1_ID10275_47 --> 2 - 1 Original Alignment ccGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACC-TATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAa attttctgtccaggctcctgtcctttctcctgtttcttccttctctgcagccGCTGGTTTGTCCTCCATCCCAGGCCCTGCAGGCCCACCAGGGCCACCAGGTCCTCGAGGGCCTCCAGGGGTTTCAACAGCTCTGTCCACCCTATGCAGCTGAGAACAGTGATAACTTCCGCAGTGAGCTGATTAGCTACCTCACAagtaagaacccttgatgtgtgccccctgtgccccccccctagacttccacg Alignment from CESAR ccGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACC-TATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAa attttctgtccaggctcctgtcctttctcctgtttcttccttctctgcagccGCTGGTTTGTCCTCCATCCCAGGCCCTGCAGGCCCACCAGGGCCACCAGGTCCTCGAGGGCCTCCAGGGGTTTCAACAGCTCTGTCCACCCTATGCAGCTGAGAACAGTGATAACTTCCGCAGTGAGCTGATTAGCTACCTCACAagtaagaacccttgatgtgtgccccctgtgccccccccctagacttccacg Alignment from Spaln_aa2Genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACC-TATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA attttctgtccaggctcctgtcctttctcctgtttcttccttctctgcagCCGCTGGTTTGTCCTCCATCCCAGGCCCTGCAGGCCCACCAGGGCCACCAGGTCCTCGAGGGCCTCCAGGGGTTTCAACAGCTCTGTCCACCcTATGCAGCTGAGAACAGTGATAACTTCCGCAGTGAGCTGATTAGCTACCTCACAAgtaagaacccttgatgtgtgccccctgtgccccccccctagacttccacg Alignment from Spaln_nt2Genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCA-CCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA attttctgtccaggctcctgtcctttctcctgtttcttccttctctgcagCCGCTGGTTTGTCCTCCATCCCAGGCCCTGCAGGCCCACCAGGGCCACCAGGTCCTCGAGGGCCTCCAGGGGTTTCAACAGCTCTGTCCACCCTATGCAGCTGAGAACAGTGATAACTTCCGCAGTGAGCTGATTAGCTACCTCACAAgtaagaacccttgatgtgtgccccctgtgccccccccctagacttccacg Alignment from Pairagon CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCA-CCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA attttctgtccaggctcctgtcctttctcctgtttcttccttctctgcagCCGCTGGTTTGTCCTCCATCCCAGGCCCTGCAGGCCCACCAGGGCCACCAGGTCCTCGAGGGCCTCCAGGGGTTTCAACAGCTCTGTCCACCCTATGCAGCTGAGAACAGTGATAACTTCCGCAGTGAGCTGATTAGCTACCTCACAAgtaagaacccttgatgtgtgccccctgtgccccccccctagacttccacg Alignment from Exonerate_protein2genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACC-TATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA attttctgtccaggctcctgtcctttctcctgtttcttccttctctgcagCCGCTGGTTTGTCCTCCATCCCAGGCCCTGCAGGCCCACCAGGGCCACCAGGTCCTCGAGGGCCTCCAGGGGTTTCAACAGCTCTGTCCACCCTATGCAGCTGAGAACAGTGATAACTTCCGCAGTGAGCTGATTAGCTACCTCACAAgtaagaacccttgatgtgtgccccctgtgccccccccctagacttccacg Alignment from Exonerate_coding2genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACC-TATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA attttctgtccaggctcctgtcctttctcctgtttcttccttctctgcagCCGCTGGTTTGTCCTCCATCCCAGGCCCTGCAGGCCCACCAGGGCCACCAGGTCCTCGAGGGCCTCCAGGGGTTTCAACAGCTCTGTCCACCCTATGCAGCTGAGAACAGTGATAACTTCCGCAGTGAGCTGATTAGCTACCTCACAAgtaagaacccttgatgtgtgccccctgtgccccccccctagacttccacg Alignment from GeneWise CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCC-ACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA attttctgtccaggctcctgtcctttctcctgtttcttccttctctgcagCCGCTGGTTTGTCCTCCATCCCAGGCCCTGCAGGCCCACCAGGGCCACCAGGTCCTCGAGGGCCTCCAGGGGTTTCAACAGCTCTGTCCACCCTATGCAGCTGAGAACAGTGATAACTTCCGCAGTGAGCTGATTAGCTACCTCACAAgtaagaacccttgatgtgtgccccctgtgccccccccctagacttccacg #### Col17a1_ID10278_44 --> 2 - 1 Original Alignment caTCAGGCTACGGTGCTGGCTTG-TCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAc aggccacggaggttagccaaagtcccctcctccctcccttcctcctttagcaTCAGGGTATAGTGCTGGCTTGCTCCTCTGCTTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAcgtatgtatcctacaatgggcaggagtagggtcttttacctccctcctgtc Alignment from CESAR caTCAGGCTACGGTGCTGGCTTG-TCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAc aggccacggaggttagccaaagtcccctcctccctcccttcctcctttagcaTCAGGGTATAGTGCTGGCTTGCTCCTCTGCTTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAcgtatgtatcctacaatgggcaggagtagggtcttttacctccctcctgtc Alignment from Spaln_aa2Genome CATCAGGCTACGGTGCTGGCTTG-TCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC aggccacggaggttagccaaagtcccctcctccctcccttcctcctttagCATCAGGGTATAGTGCTGGCTTGcTCCTCTGCTTCCTCCTCAGAAGATATCTTGGCCATGCTGCGACgtatgtatcctacaatgggcaggagtagggtcttttacctccctcctgtc Alignment from Spaln_nt2Genome CATCAGGCTACGGTGCTGGCTTG-TCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC aggccacggaggttagccaaagtcccctcctccctcccttcctcctttagCATCAGGGTATAGTGCTGGCTTGCTCCTCTGCTTCCTCCTCAGAAGATATCTTGGCCATGCTGCGACgtatgtatcctacaatgggcaggagtagggtcttttacctccctcctgtc Alignment from Pairagon CATCAGGCTACGGTGCTGGCTTG-TCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC aggccacggaggttagccaaagtcccctcctccctcccttcctcctttagCATCAGGGTATAGTGCTGGCTTGCTCCTCTGCTTCCTCCTCAGAAGATATCTTGGCCATGCTGCGACgtatgtatcctacaatgggcaggagtagggtcttttacctccctcctgtc Alignment from Exonerate_protein2genome CATCAGGCTACGGTGCTGGCTTG-TCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC aggccacggaggttagccaaagtcccctcctccctcccttcctcctttagCATCAGGGTATAGTGCTGGCTTGCTCCTCTGCTTCCTCCTCAGAAGATATCTTGGCCATGCTGCGACgtatgtatcctacaatgggcaggagtagggtcttttacctccctcctgtc Alignment from Exonerate_coding2genome CATCAGGCTACGGTGCTGGCTTG-TCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC aggccacggaggttagccaaagtcccctcctccctcccttcctcctttagCATCAGGGTATAGTGCTGGCTTGCTCCTCTGCTTCCTCCTCAGAAGATATCTTGGCCATGCTGCGACgtatgtatcctacaatgggcaggagtagggtcttttacctccctcctgtc Alignment from GeneWise ---TACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGATATCTTGGCCATGCTGCGAC aggccacggaggttagccaaagtcccctcctccctcccttcctcctttagcatcagGGTATAGTGCTGGCTTGCTCCTCTGCTTCCTCCTCAGAAGATATCTTGGCCATGCTGCGACgtatgtatcctacaatgggcaggagtagggtcttttacctccctcctgtc #### Col17a1_ID10279_43 --> 2 - 1 Original Alignment gtGACAACATCAGGACTTATCTC-TCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGt ttttggtggcaggcttgatcatgtcatcaatttttttttttttaatctaggtGACAATATCAGGACTTATCTCCCCAGGGGTTCAGGGTCCCCCAGGCCCCCCAGGCCCCCCTGGGCCTGTCATCACCATCAAAGGAGAGACTTTTGACTACTCACAGCTGGCAAGTCAGGTTGTTAGCTACCTGCGGtgtaaatccgtgacacttcctatgttgttaccctcaatacctttggagctc Alignment from CESAR gtGACAACATCAGGACTTATCTC-TCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGt ttttggtggcaggcttgatcatgtcatcaatttttttttttttaatctaggtGACAATATCAGGACTTATCTCCCCAGGGGTTCAGGGTCCCCCAGGCCCCCCAGGCCCCCCTGGGCCTGTCATCACCATCAAAGGAGAGACTTTTGACTACTCACAGCTGGCAAGTCAGGTTGTTAGCTACCTGCGGtgtaaatccgtgacacttcctatgttgttaccctcaatacctttggagctc Alignment from Spaln_aa2Genome GTGACAACATCAGGACTTATCTC-TCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT ttttggtggcaggcttgatcatgtcatcaatttttttttttttaatctagGTGACAATATCAGGACTTATCTCcCCAGGGGTTCAGGGTCCCCCAGGCCCCCCAGGCCCCCCTGGGCCTGTCATCACCATCAAAGGAGAGACTTTTGACTACTCACAGCTGGCAAGTCAGGTTGTTAGCTACCTGCGGTgtaaatccgtgacacttcctatgttgttaccctcaatacctttggagctc Alignment from Spaln_nt2Genome GTGACAACATCAGGACTTATCTCTC-AGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT ttttggtggcaggcttgatcatgtcatcaatttttttttttttaatctagGTGACAATATCAGGACTTATCTCCCCAGGGGTTCAGGGTCCCCCAGGCCCCCCAGGCCCCCCTGGGCCTGTCATCACCATCAAAGGAGAGACTTTTGACTACTCACAGCTGGCAAGTCAGGTTGTTAGCTACCTGCGGTgtaaatccgtgacacttcctatgttgttaccctcaatacctttggagctc Alignment from Pairagon GTGACAACATCAGGACTTATCT-CTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT ttttggtggcaggcttgatcatgtcatcaatttttttttttttaatctagGTGACAATATCAGGACTTATCTCCCCAGGGGTTCAGGGTCCCCCAGGCCCCCCAGGCCCCCCTGGGCCTGTCATCACCATCAAAGGAGAGACTTTTGACTACTCACAGCTGGCAAGTCAGGTTGTTAGCTACCTGCGGTgtaaatccgtgacacttcctatgttgttaccctcaatacctttggagctc Alignment from Exonerate_protein2genome GTGACAACATCAGGACTTATCTC-TCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT ttttggtggcaggcttgatcatgtcatcaatttttttttttttaatctagGTGACAATATCAGGACTTATCTCCCCAGGGGTTCAGGGTCCCCCAGGCCCCCCAGGCCCCCCTGGGCCTGTCATCACCATCAAAGGAGAGACTTTTGACTACTCACAGCTGGCAAGTCAGGTTGTTAGCTACCTGCGGTgtaaatccgtgacacttcctatgttgttaccctcaatacctttggagctc Alignment from Exonerate_coding2genome GTGACAACATCAGGACTTATCTC-TCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT ttttggtggcaggcttgatcatgtcatcaatttttttttttttaatctagGTGACAATATCAGGACTTATCTCCCCAGGGGTTCAGGGTCCCCCAGGCCCCCCAGGCCCCCCTGGGCCTGTCATCACCATCAAAGGAGAGACTTTTGACTACTCACAGCTGGCAAGTCAGGTTGTTAGCTACCTGCGGTgtaaatccgtgacacttcctatgttgttaccctcaatacctttggagctc Alignment from GeneWise GTGACAACATCAGGACTTATCTC-TCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT ttttggtggcaggcttgatcatgtcatcaatttttttttttttaatctagGTGACAATATCAGGACTTATCTCCCCAGGGGTTCAGGGTCCCCCAGGCCCCCCAGGCCCCCCTGGGCCTGTCATCACCATCAAAGGAGAGACTTTTGACTACTCACAGCTGGCAAGTCAGGTTGTTAGCTACCTGCGGTgtaaatccgtgacacttcctatgttgttaccctcaatacctttggagctc #### Col17a1_ID10281_41 --> 2 - 1 Original Alignment gtGATCCTGGTGTCCCAGGTACT-CCTGGCATCTCTGGTGGTCTTTCTCATg cccggggaaggaagcacccataactcctaaatcccctgacacttttgcaggtGATCCTGGTGTCCCAGGTACCCCCTGGCATCTCTGGTGGTCTTTCTCATggtaaaaattgaagattaagagagttcctctcccccccatggagggaactt Alignment from CESAR gtGATCCTGGTGTCCCAGGTACT-CCTGGCATCTCTGGTGGTCTTTCTCATg cccggggaaggaagcacccataactcctaaatcccctgacacttttgcaggtGATCCTGGTGTCCCAGGTACCCCCTGGCATCTCTGGTGGTCTTTCTCATggtaaaaattgaagattaagagagttcctctcccccccatggagggaactt Alignment from Spaln_aa2Genome GTGATCCTGGTGTCCCAGGTACTCCT-GGCATCTCTGGTGGTCTTTCTCATG cccggggaaggaagcacccataactcctaaatcccctgacacttttgcagGTGATCCTGGTGTCCCAGGTACCCCCtGGCATCTCTGGTGGTCTTTCTCATGgtaaaaattgaagattaagagagttcctctcccccccatggagggaactt Alignment from Spaln_nt2Genome GTGATCCTGGTGTCCCAGGTACTCC-TGGCATCTCTGGTGGTCTTTCTCATG cccggggaaggaagcacccataactcctaaatcccctgacacttttgcagGTGATCCTGGTGTCCCAGGTACCCCCTGGCATCTCTGGTGGTCTTTCTCATGgtaaaaattgaagattaagagagttcctctcccccccatggagggaactt Alignment from Pairagon GTGATCCTGGTGTCCCAGGTA-CTCCTGGCATCTCTGGTGGTCTTTCTCATG cccggggaaggaagcacccataactcctaaatcccctgacacttttgcagGTGATCCTGGTGTCCCAGGTACCCCCTGGCATCTCTGGTGGTCTTTCTCATGgtaaaaattgaagattaagagagttcctctcccccccatggagggaactt Alignment from Exonerate_protein2genome GTGATCCTGGTGTCCCAGGTACT-CCTGGCATCTCTGGTGGTCTTTCTCATG cccggggaaggaagcacccataactcctaaatcccctgacacttttgcagGTGATCCTGGTGTCCCAGGTACCCCCTGGCATCTCTGGTGGTCTTTCTCATGgtaaaaattgaagattaagagagttcctctcccccccatggagggaactt Alignment from Exonerate_coding2genome GTGATCCTGGTGTCCCAGGTACT-CCTGGCATCTCTGGTGGTCTTTCTCATG cccggggaaggaagcacccataactcctaaatcccctgacacttttgcagGTGATCCTGGTGTCCCAGGTACCCCCTGGCATCTCTGGTGGTCTTTCTCATGgtaaaaattgaagattaagagagttcctctcccccccatggagggaactt Alignment from GeneWise GTGATCCTGGTGTCCCAGGT-ACTCCTGGCATCTCTGGTGGTCTTTCTCATG cccggggaaggaagcacccataactcctaaatcccctgacacttttgcagGTGATCCTGGTGTCCCAGGTACCCCCTGGCATCTCTGGTGGTCTTTCTCATGgtaaaaattgaagattaagagagttcctctcccccccatggagggaactt #### Col17a1_ID10283_39 --> 2 - 1 Original Alignment ggGAAGGCGTACCAGGCCCACCCGGG-CCACCAGGATCCTTCCTGACTGACTCAg atccactggtgaggtttttgtctcataatgacttctcttacatgtcacagggGAGGGTGTACCAGGCCCACCTGGGCCCACCAGGATCTTTTTTGACTGACTCAggtaccttggatccaatcacaccttttcatatttcaacccaattgcactga Alignment from CESAR ggGAAGGCGTACCAGGCCCACCCGGG-CCACCAGGATCCTTCCTGACTGACTCAg atccactggtgaggtttttgtctcataatgacttctcttacatgtcacagggGAGGGTGTACCAGGCCCACCTGGGCCCACCAGGATCTTTTTTGACTGACTCAggtaccttggatccaatcacaccttttcatatttcaacccaattgcactga Alignment from Spaln_aa2Genome GGGAAGGCGTACCAGGCCCACCCGGGCCA-CCAGGATCCTTCCTGACTGACTCAG atccactggtgaggtttttgtctcataatgacttctcttacatgtcacagGGGAGGGTGTACCAGGCCCACCTGGGCCCaCCAGGATCTTTTTTGACTGACTCAGgtaccttggatccaatcacaccttttcatatttcaacccaattgcactga Alignment from Spaln_nt2Genome GGGAAGGCGTACCAGGCCCACCCGGGCC-ACCAGGATCCTTCCTGACTGACTCAG atccactggtgaggtttttgtctcataatgacttctcttacatgtcacagGGGAGGGTGTACCAGGCCCACCTGGGCCCACCAGGATCTTTTTTGACTGACTCAGgtaccttggatccaatcacaccttttcatatttcaacccaattgcactga Alignment from Pairagon GGGAAGGCGTACCAGGCCCACCCGGG-CCACCAGGATCCTTCCTGACTGACTCAG atccactggtgaggtttttgtctcataatgacttctcttacatgtcacagGGGAGGGTGTACCAGGCCCACCTGGGCCCACCAGGATCTTTTTTGACTGACTCAGgtaccttggatccaatcacaccttttcatatttcaacccaattgcactga Alignment from Exonerate_protein2genome GGGAAGGCGTACCAGGCCCACCC-GGGCCACCAGGATCCTTCCTGACTGACTCAG atccactggtgaggtttttgtctcataatgacttctcttacatgtcacagGGGAGGGTGTACCAGGCCCACCTGGGCCCACCAGGATCTTTTTTGACTGACTCAGgtaccttggatccaatcacaccttttcatatttcaacccaattgcactga Alignment from Exonerate_coding2genome GGGAAGGCGTACCAGGCCCACCC-GGGCCACCAGGATCCTTCCTGACTGACTCAG atccactggtgaggtttttgtctcataatgacttctcttacatgtcacagGGGAGGGTGTACCAGGCCCACCTGGGCCCACCAGGATCTTTTTTGACTGACTCAGgtaccttggatccaatcacaccttttcatatttcaacccaattgcactga Alignment from GeneWise GGGAAGGCGTACCAGGCCCACCC-GGGCCACCAGGATCCTTCCTGACTGACTCAG atccactggtgaggtttttgtctcataatgacttctcttacatgtcacagGGGAGGGTGTACCAGGCCCACCTGGGCCCACCAGGATCTTTTTTGACTGACTCAGgtaccttggatccaatcacaccttttcatatttcaacccaattgcactga #### Col17a1_ID10284_38 --> 2 - 1 Original Alignment ggCCTTCCATCCCAGGCCCGCCA-GGACCCAGAGGTCCACCAg agtggggagaatcagcctccaagggcagagcagtgcttttgtcctctcagggCCTTCCATTCCAGGCCCGCCACGGACCCCGAAGTCCACCAggtaagagctgaactgttttcccataggagggggcaaggacaggggaagca Alignment from CESAR ggCCTTCCATCCCAGGCCCGCCA-GGACCCAGAGGTCCACCAg agtggggagaatcagcctccaagggcagagcagtgcttttgtcctctcagggCCTTCCATTCCAGGCCCGCCACGGACCCCGAAGTCCACCAggtaagagctgaactgttttcccataggagggggcaaggacaggggaagca Alignment from Spaln_aa2Genome GGCCTTCCATCCCAGGCCCGCCA-GGACCCAGAGGTCCACCAG agtggggagaatcagcctccaagggcagagcagtgcttttgtcctctcagGGCCTTCCATTCCAGGCCCGCCAcGGACCCCGAAGTCCACCAGgtaagagctgaactgttttcccataggagggggcaaggacaggggaagca Alignment from Spaln_nt2Genome GGCCTTCCATCCCAGGCCCGCCA-GGACCCAGAGGTCCACCAG agtggggagaatcagcctccaagggcagagcagtgcttttgtcctctcagGGCCTTCCATTCCAGGCCCGCCACGGACCCCGAAGTCCACCAGgtaagagctgaactgttttcccataggagggggcaaggacaggggaagca Alignment from Pairagon GGCCTTCCATCCCAGGCCCGCCA-GGACCCAGAGGTCCACCAG agtggggagaatcagcctccaagggcagagcagtgcttttgtcctctcagGGCCTTCCATTCCAGGCCCGCCACGGACCCCGAAGTCCACCAGgtaagagctgaactgttttcccataggagggggcaaggacaggggaagca Alignment from Exonerate_protein2genome GGCCTTCCATCCCAGGCCCGCCA-GGACCCAGAGGTCCACCAG agtggggagaatcagcctccaagggcagagcagtgcttttgtcctctcagGGCCTTCCATTCCAGGCCCGCCACGGACCCCGAAGTCCACCAGgtaagagctgaactgttttcccataggagggggcaaggacaggggaagca Alignment from Exonerate_coding2genome CCAGGACCCAGAGGTCCACCAG AGTGGGGAGAATCAGCCTCCAAgggcagagcagtgcttttgtcctctcagggccttccattccaggcccgccacggaccccgaagtccaccaggtaagagctgaactgttttcccataggagggggcaaggacaggggaagca Alignment from GeneWise CCAGGACCCAGAGGTCCACCA------------------G AGTGGGGAGAATCAGCCTCCAAGGGCAGAGCAGTGCTTTTgtcctctcagggccttccattccaggcccgccacggaccccgaagtccaccaggtaagagctgaactgttttcccataggagggggcaaggacaggggaagca #### Col17a1_ID10285_37 --> 2 - 1 Original Alignment aaGGTGTTGACTTACGAGGTCCCCCTGGCCCA-CCTGGCCCACGAGGGCCACCAg cgaagagtctgacctcagtcttctttgtctcactgatctctgtattccagaaGGGGTTGACTTACGTGGTCCCCCTGGCCCACCCTGGACCCCGAGGGCCACCAggtgagtgctcactgatatttagaagtggggagaatcagcctccaagggca Alignment from CESAR aaGGTGTTGACTTACGAGGTCCCCCTGGCCCA-CCTGGCCCACGAGGGCCACCAg cgaagagtctgacctcagtcttctttgtctcactgatctctgtattccagaaGGGGTTGACTTACGTGGTCCCCCTGGCCCACCCTGGACCCCGAGGGCCACCAggtgagtgctcactgatatttagaagtggggagaatcagcctccaagggca Alignment from Spaln_aa2Genome AAGGTGTTGACTTACGAGGTCCCCCTGGCCCA-CCTGGCCCACGAGGGCCACCAG cgaagagtctgacctcagtcttctttgtctcactgatctctgtattccagAAGGGGTTGACTTACGTGGTCCCCCTGGCCCAcCCTGGACCCCGAGGGCCACCAGgtgagtgctcactgatatttagaagtggggagaatcagcctccaagggca Alignment from Spaln_nt2Genome AAGGTGTTGACTTACGAGGTCCCCCTGGCCCACC-TGGCCCACGAGGGCCACCAG cgaagagtctgacctcagtcttctttgtctcactgatctctgtattccagAAGGGGTTGACTTACGTGGTCCCCCTGGCCCACCCTGGACCCCGAGGGCCACCAGgtgagtgctcactgatatttagaagtggggagaatcagcctccaagggca Alignment from Pairagon AAGGTGTTGACTTACGAGGTCCCCCTGGCCCA-CCTGGCCCACGAGGGCCACCAG cgaagagtctgacctcagtcttctttgtctcactgatctctgtattccagAAGGGGTTGACTTACGTGGTCCCCCTGGCCCACCCTGGACCCCGAGGGCCACCAGgtgagtgctcactgatatttagaagtggggagaatcagcctccaagggca Alignment from Exonerate_protein2genome AAGGTGTTGACTTACGAGGTCCCCCTGGCCCA-CCTGGCCCACGAGGGCCACCAG cgaagagtctgacctcagtcttctttgtctcactgatctctgtattccagAAGGGGTTGACTTACGTGGTCCCCCTGGCCCACCCTGGACCCCGAGGGCCACCAGgtgagtgctcactgatatttagaagtggggagaatcagcctccaagggca Alignment from Exonerate_coding2genome AAGGTGTTGACTTACGAGGTCCCCCTGGCCCA-CCTGGCCCACGAGGGCCACCAG cgaagagtctgacctcagtcttctttgtctcactgatctctgtattccagAAGGGGTTGACTTACGTGGTCCCCCTGGCCCACCCTGGACCCCGAGGGCCACCAGgtgagtgctcactgatatttagaagtggggagaatcagcctccaagggca Alignment from GeneWise AAGGTGTTGACTTACGAGGTCCCCCTGGCCCACCT-GGCCCACGAGGGCCACCAG cgaagagtctgacctcagtcttctttgtctcactgatctctgtattccagAAGGGGTTGACTTACGTGGTCCCCCTGGCCCACCCTGGACCCCGAGGGCCACCAGgtgagtgctcactgatatttagaagtggggagaatcagcctccaagggca #### Col17a1_ID10296_26 --> 2 - 1 Original Alignment gtGACAAAGGACTCATGGGA-CCACCAGGACCCAAAg ggcaaaccactacaggcttgccacactatttctgttcttctcctctccaggtGACAAGGGACTGATAGGACCCGCCTGGACCCAAAggtgagtattgcccatggctgctcagcctttgctatggcctcttctgcaat Alignment from CESAR gtGACAAAGGACTCATGGGACCA-CCAGGACCCAAAg ggcaaaccactacaggcttgccacactatttctgttcttctcctctccaggtGACAAGGGACTGATAGGACCCGCCTGGACCCAAAggtgagtattgcccatggctgctcagcctttgctatggcctcttctgcaat Alignment from Spaln_aa2Genome GTGACAAAGGACTCATGGGACCA-CCAGGACCCAAAG ggcaaaccactacaggcttgccacactatttctgttcttctcctctccagGTGACAAGGGACTGATAGGACCCgCCTGGACCCAAAGgtgagtattgcccatggctgctcagcctttgctatggcctcttctgcaat Alignment from Spaln_nt2Genome GTGACAAAGGACTCATGGGACCA-CCAGGACCCAAAG ggcaaaccactacaggcttgccacactatttctgttcttctcctctccagGTGACAAGGGACTGATAGGACCCGCCTGGACCCAAAGgtgagtattgcccatggctgctcagcctttgctatggcctcttctgcaat Alignment from Pairagon GTGACAAAGGACTCATGGGA-CCACCAGGACCCAAAG ggcaaaccactacaggcttgccacactatttctgttcttctcctctccagGTGACAAGGGACTGATAGGACCCGCCTGGACCCAAAGgtgagtattgcccatggctgctcagcctttgctatggcctcttctgcaat Alignment from Exonerate_protein2genome GTGACAAAGGACTCATGGGA-CCACCAGGACCCAAAG ggcaaaccactacaggcttgccacactatttctgttcttctcctctccagGTGACAAGGGACTGATAGGACCCGCCTGGACCCAAAGgtgagtattgcccatggctgctcagcctttgctatggcctcttctgcaat Alignment from Exonerate_coding2genome ggcaaaccactacaggcttgccacactatttctgttcttctcctctccaggtgacaagggactgataggacccgcctggacccaaaggtgagtattgcccatggctgctcagcctttgctatggcctcttctgcaat Alignment from GeneWise ggcaaaccactacaggcttgccacactatttctgttcttctcctctccaggtgacaagggactgataggacccgcctggacccaaaggtgagtattgcccatggctgctcagcctttgctatggcctcttctgcaat #### Col17a1_ID10297_25 --> 2 - 1 Original Alignment gtGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGA-CTTCCTGGTGTCAAAg acctccaatgatgggaatgtatgatgggtggttctcttctaacttccaaggtGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACCTACCTGGTGTCAAAggtaagttaggggaggagtagcaattagaaagcattctgtggagacatctc Alignment from CESAR gtGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGA-CTTCCTGGTGTCAAAg acctccaatgatgggaatgtatgatgggtggttctcttctaacttccaaggtGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACCTACCTGGTGTCAAAggtaagttaggggaggagtagcaattagaaagcattctgtggagacatctc Alignment from Spaln_aa2Genome GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGA-CTTCCTGGTGTCAAAG acctccaatgatgggaatgtatgatgggtggttctcttctaacttccaagGTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGAcCTACCTGGTGTCAAAGgtaagttaggggaggagtagcaattagaaagcattctgtggagacatctc Alignment from Spaln_nt2Genome GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTT-CCTGGTGTCAAAG acctccaatgatgggaatgtatgatgggtggttctcttctaacttccaagGTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACCTACCTGGTGTCAAAGgtaagttaggggaggagtagcaattagaaagcattctgtggagacatctc Alignment from Pairagon GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTT-CCTGGTGTCAAAG acctccaatgatgggaatgtatgatgggtggttctcttctaacttccaagGTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACCTACCTGGTGTCAAAGgtaagttaggggaggagtagcaattagaaagcattctgtggagacatctc Alignment from Exonerate_protein2genome GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGA-CTTCCTGGTGTCAAAG acctccaatgatgggaatgtatgatgggtggttctcttctaacttccaagGTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACCTACCTGGTGTCAAAGgtaagttaggggaggagtagcaattagaaagcattctgtggagacatctc Alignment from Exonerate_coding2genome GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGA-CTTCCTGGTGTCAAAG acctccaatgatgggaatgtatgatgggtggttctcttctaacttccaagGTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACCTACCTGGTGTCAAAGgtaagttaggggaggagtagcaattagaaagcattctgtggagacatctc Alignment from GeneWise GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGA-CTTCCTGGTGTCAAAG acctccaatgatgggaatgtatgatgggtggttctcttctaacttccaagGTGCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACCTACCTGGTGTCAAAGgtaagttaggggaggagtagcaattagaaagcattctgtggagacatctc #### Coro1b_ID352_2 --> 0 - 0 Original Alignment ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAA-GTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaggtcaggagttttgggtcttctttggtctttttggactgtctccagACAGGCCGCGTTGACAAGGCATTCCCAACAGTGTGTGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAACGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaactaaagatccattcaagttgggttttcaggatgtgtctgaggggtt Alignment from CESAR ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAA-GTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaggtcaggagttttgggtcttctttggtctttttggactgtctccagACAGGCCGCGTTGACAAGGCATTCCCAACAGTGTGTGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAACGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaactaaagatccattcaagttgggttttcaggatgtgtctgaggggtt Alignment from Spaln_aa2Genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAA-GTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaggtcaggagttttgggtcttctttggtctttttggactgtctccagACAGGCCGCGTTGACAAGGCATTCCCAACAGTGTGTGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAcGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaactaaagatccattcaagttgggttttcaggatgtgtctgaggggtt Alignment from Spaln_nt2Genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAA-GTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaggtcaggagttttgggtcttctttggtctttttggactgtctccagACAGGCCGCGTTGACAAGGCATTCCCAACAGTGTGTGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAACGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaactaaagatccattcaagttgggttttcaggatgtgtctgaggggtt Alignment from Pairagon ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAA-GTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaggtcaggagttttgggtcttctttggtctttttggactgtctccagACAGGCCGCGTTGACAAGGCATTCCCAACAGTGTGTGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAACGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaactaaagatccattcaagttgggttttcaggatgtgtctgaggggtt Alignment from Exonerate_protein2genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAA-GTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaggtcaggagttttgggtcttctttggtctttttggactgtctccagACAGGCCGCGTTGACAAGGCATTCCCAACAGTGTGTGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAACGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaactaaagatccattcaagttgggttttcaggatgtgtctgaggggtt Alignment from Exonerate_coding2genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAA-GTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaggtcaggagttttgggtcttctttggtctttttggactgtctccagACAGGCCGCGTTGACAAGGCATTCCCAACAGTGTGTGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAACGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaactaaagatccattcaagttgggttttcaggatgtgtctgaggggtt Alignment from GeneWise ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAA-GTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaggtcaggagttttgggtcttctttggtctttttggactgtctccagACAGGCCGCGTTGACAAGGCATTCCCAACAGTGTGTGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAACGTCATTGCCAGTGGATCAGAAGACTGCACTGTCATGgtaactaaagatccattcaagttgggttttcaggatgtgtctgaggggtt #### Coro1b_ID353_3 --> 0 - 1 Original Alignment GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACCAAGCGC-GTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAg tagcaagggcaagcactggcctgagcccgtctctgattttttatctccagGTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCCCTGACAGAGCCAGTAGTTGTGCCTGAGGGGCATACAAGACGTCGTGGGCATTATTACCTGGCACCCTACAGCCCGAAATGTGCTTCTCGGTGCAggtaaggaccattccatacctacaccttgctctctgcccttctccagaatg Alignment from CESAR GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACCAAGCGC-GTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAg tagcaagggcaagcactggcctgagcccgtctctgattttttatctccagGTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCCCTGACAGAGCCAGTAGTTGTGCCTGAGGGGCATACAAGACGTCGTGGGCATTATTACCTGGCACCCTACAGCCCGAAATGTGCTTCTCGGTGCAggtaaggaccattccatacctacaccttgctctctgcccttctccagaatg Alignment from Spaln_aa2Genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACCAAGCGCGTGGGC-ATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG tagcaagggcaagcactggcctgagcccgtctctgattttttatctccagGTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCCCTGACAGAGCCAGTAGTTGTGCCTGAGGGGCATACAAGACGTCGTGGGcATTATTACCTGGCACCCTACAGCCCGAAATGTGCTTCTCGGTGCAGgtaaggaccattccatacctacaccttgctctctgcccttctccagaatg Alignment from Spaln_nt2Genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACCAAGCG-CGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG tagcaagggcaagcactggcctgagcccgtctctgattttttatctccagGTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCCCTGACAGAGCCAGTAGTTGTGCCTGAGGGGCATACAAGACGTCGTGGGCATTATTACCTGGCACCCTACAGCCCGAAATGTGCTTCTCGGTGCAGgtaaggaccattccatacctacaccttgctctctgcccttctccagaatg Alignment from Pairagon GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACCAAGCG-CGTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG tagcaagggcaagcactggcctgagcccgtctctgattttttatctccagGTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCCCTGACAGAGCCAGTAGTTGTGCCTGAGGGGCATACAAGACGTCGTGGGCATTATTACCTGGCACCCTACAGCCCGAAATGTGCTTCTCGGTGCAGgtaaggaccattccatacctacaccttgctctctgcccttctccagaatg Alignment from Exonerate_protein2genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACCAAGCGC-GTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG tagcaagggcaagcactggcctgagcccgtctctgattttttatctccagGTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCCCTGACAGAGCCAGTAGTTGTGCCTGAGGGGCATACAAGACGTCGTGGGCATTATTACCTGGCACCCTACAGCCCGAAATGTGCTTCTCGGTGCAGgtaaggaccattccatacctacaccttgctctctgcccttctccagaatg Alignment from Exonerate_coding2genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACCAAGCGC-GTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG tagcaagggcaagcactggcctgagcccgtctctgattttttatctccagGTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCCCTGACAGAGCCAGTAGTTGTGCCTGAGGGGCATACAAGACGTCGTGGGCATTATTACCTGGCACCCTACAGCCCGAAATGTGCTTCTCGGTGCAGgtaaggaccattccatacctacaccttgctctctgcccttctccagaatg Alignment from GeneWise GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACCAAGCGC-GTGGGCATTATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG tagcaagggcaagcactggcctgagcccgtctctgattttttatctccagGTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCCCTGACAGAGCCAGTAGTTGTGCCTGAGGGGCATACAAGACGTCGTGGGCATTATTACCTGGCACCCTACAGCCCGAAATGTGCTTCTCGGTGCAGgtaaggaccattccatacctacaccttgctctctgcccttctccagaatg #### Coro1b_ID357_7 --> 0 - 2 Original Alignment GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACA-TTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCag agcataatggaaagatttcattaaatgcattgtgttgtttgcttttttagGGCGATTCTAGCATCCGATACTTTGAGATCACAGATGAGCCC---CACATCCACTTCCTGAATACACTTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCaggtaagtacaccctctggggtggtcatatgtaggcatactgttttaggatg Alignment from CESAR GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACA-TTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCag agcataatggaaagatttcattaaatgcattgtgttgtttgcttttttagGGCGATTCTAGCATCCGATACTTTGAGATCACAGATGAG---CCCCACATCCACTTCCTGAATACACTTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCaggtaagtacaccctctggggtggtcatatgtaggcatactgttttaggatg Alignment from Spaln_aa2Genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACA-TTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG agcataatggaaagatttcattaaatgcattgtgttgtttgcttttttagGGCGATTCTAGCATCCGATACTTTGAGATCACAGATGAG---CCCCACATCCACTTCCTGAATACAcTTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAGgtaagtacaccctctggggtggtcatatgtaggcatactgttttaggatg Alignment from Spaln_nt2Genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACA-TTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG agcataatggaaagatttcattaaatgcattgtgttgtttgcttttttagGGCGATTCTAGCATCCGATACTTTGAGATCACAGATGAGCCCC---ACATCCACTTCCTGAATACACTTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAGgtaagtacaccctctggggtggtcatatgtaggcatactgttttaggatg Alignment from Pairagon GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACA-TTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG agcataatggaaagatttcattaaatgcattgtgttgtttgcttttttagGGCGATTCTAGCATCCGATACTTTGAGATCACAGATGAGCCCC---ACATCCACTTCCTGAATACACTTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAGgtaagtacaccctctggggtggtcatatgtaggcatactgttttaggatg Alignment from Exonerate_protein2genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACA-TTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG agcataatggaaagatttcattaaatgcattgtgttgtttgcttttttagGGCGATTCTAGCATCCGATACTTTGAGATCACAGATGAG---CCCCACATCCACTTCCTGAATACACTTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAGgtaagtacaccctctggggtggtcatatgtaggcatactgttttaggatg Alignment from Exonerate_coding2genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACA-TTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG agcataatggaaagatttcattaaatgcattgtgttgtttgcttttttagGGCGATTCTAGCATCCGATACTTTGAGATCACAGATGAG---CCCCACATCCACTTCCTGAATACACTTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAGgtaagtacaccctctggggtggtcatatgtaggcatactgttttaggatg Alignment from GeneWise GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAAT-ACATTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG agcataatggaaagatttcattaaatgcattgtgttgtttgcttttttagGGCGATTCTAGCATCCGATACTTTGAGATCACAGATGAGCCC---CACATCCACTTCCTGAATACACTTTACCAGCAAAGAACCCCAGAGGGGTATGGGCAGCATGCCGAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAGgtaagtacaccctctggggtggtcatatgtaggcatactgttttaggatg #### Csf2ra_ID13430_10 --> 1 - 0 Original Alignment gTTCGAGGTGACG-CGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ggggatgcccaggtgcatgctgctctgcccctccatcttttctcttgcaggTTGGAGGTGACACCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCTGACGACGTGCGAGTGAACCCTGAGgttagtagtcacaagcgctaatggtgggggtggggcatgaagcttgtccc Alignment from CESAR gTTCGAGGTGACG-CGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ggggatgcccaggtgcatgctgctctgcccctccatcttttctcttgcaggTTGGAGGTGACACCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCTGACGACGTGCGAGTGAACCCTGAGgttagtagtcacaagcgctaatggtgggggtggggcatgaagcttgtccc Alignment from Spaln_aa2Genome GTTCGAGGTGACG-CGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ggggatgcccaggtgcatgctgctctgcccctccatcttttctcttgcagGTTGGAGGTGACAcCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCTGACGACGTGCGAGTGAACCCTGAGgttagtagtcacaagcgctaatggtgggggtggggcatgaagcttgtccc Alignment from Spaln_nt2Genome GTTCGAGGTGACGC-GCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ggggatgcccaggtgcatgctgctctgcccctccatcttttctcttgcagGTTGGAGGTGACACCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCTGACGACGTGCGAGTGAACCCTGAGgttagtagtcacaagcgctaatggtgggggtggggcatgaagcttgtccc Alignment from Pairagon GTTCGAGGTGACG-CGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ggggatgcccaggtgcatgctgctctgcccctccatcttttctcttgcagGTTGGAGGTGACACCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCTGACGACGTGCGAGTGAACCCTGAGgttagtagtcacaagcgctaatggtgggggtggggcatgaagcttgtccc Alignment from Exonerate_protein2genome GTTCGAGGTGACG-CGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ggggatgcccaggtgcatgctgctctgcccctccatcttttctcttgcagGTTGGAGGTGACACCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCTGACGACGTGCGAGTGAACCCTGAGgttagtagtcacaagcgctaatggtgggggtggggcatgaagcttgtccc Alignment from Exonerate_coding2genome GTTCGAGGTGACG-CGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ggggatgcccaggtgcatgctgctctgcccctccatcttttctcttgcagGTTGGAGGTGACACCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCTGACGACGTGCGAGTGAACCCTGAGgttagtagtcacaagcgctaatggtgggggtggggcatgaagcttgtccc Alignment from GeneWise GTTCGAGGTG-ACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG ggggatgcccaggtgcatgctgctctgcccctccatcttttctcttgcagGTTGGAGGTGACACCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTGTCTGACGACGTGCGAGTGAACCCTGAGgttagtagtcacaagcgctaatggtgggggtggggcatgaagcttgtccc #### Csf2ra_ID13431_9 --> 2 - 2 Original Alignment agGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTC-CTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGag atatgaacacactacttccagtcccctaatccacctcttcatctccgcagatGCAGAGGACACGCGGGTGCCCGGTGCACTCCTGTATGCAGTGACAGCCTGCGCAGTCCCTACTGTGCGCGCTGGTGCTTGGAGTGACTTGCAGGaggtatgtcaatggagaattagcctgaatgagggtgtgagcagggggatgcc Alignment from CESAR agGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTC-CTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGag atatgaacacactacttccagtcccctaatccacctcttcatctccgcagatGCAGAGGACACGCGGGTGCCCGGTGCACTCCTGTATGCAGTGACAGCCTGCGCAGTCCCTACTGTGCGCGCTGGTGCTTGGAGTGACTTGCAGGaggtatgtcaatggagaattagcctgaatgagggtgtgagcagggggatgcc Alignment from Spaln_aa2Genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTC-CTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG atatgaacacactacttccagtcccctaatccacctcttcatctccgcagATGCAGAGGACACGCGGGTGCCCGGTGCACTCCTGTATGCAGTGACAGCCTGCGCAGTCcCTACTGTGCGCGCTGGTGCTTGGAGTGACTTGCAGGAGgtatgtcaatggagaattagcctgaatgagggtgtgagcagggggatgcc Alignment from Spaln_nt2Genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTC-CTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG atatgaacacactacttccagtcccctaatccacctcttcatctccgcagATGCAGAGGACACGCGGGTGCCCGGTGCACTCCTGTATGCAGTGACAGCCTGCGCAGTCCCTACTGTGCGCGCTGGTGCTTGGAGTGACTTGCAGGAGgtatgtcaatggagaattagcctgaatgagggtgtgagcagggggatgcc Alignment from Pairagon AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGT-CCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG atatgaacacactacttccagtcccctaatccacctcttcatctccgcagATGCAGAGGACACGCGGGTGCCCGGTGCACTCCTGTATGCAGTGACAGCCTGCGCAGTCCCTACTGTGCGCGCTGGTGCTTGGAGTGACTTGCAGGAGgtatgtcaatggagaattagcctgaatgagggtgtgagcagggggatgcc Alignment from Exonerate_protein2genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTC-CTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG atatgaacacactacttccagtcccctaatccacctcttcatctccgcagATGCAGAGGACACGCGGGTGCCCGGTGCACTCCTGTATGCAGTGACAGCCTGCGCAGTCCCTACTGTGCGCGCTGGTGCTTGGAGTGACTTGCAGGAGgtatgtcaatggagaattagcctgaatgagggtgtgagcagggggatgcc Alignment from Exonerate_coding2genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTC-CTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG atatgaacacactacttccagtcccctaatccacctcttcatctccgcagATGCAGAGGACACGCGGGTGCCCGGTGCACTCCTGTATGCAGTGACAGCCTGCGCAGTCCCTACTGTGCGCGCTGGTGCTTGGAGTGACTTGCAGGAGgtatgtcaatggagaattagcctgaatgagggtgtgagcagggggatgcc Alignment from GeneWise AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCA-GTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG atatgaacacactacttccagtcccctaatccacctcttcatctccgcagATGCAGAGGACACGCGGGTGCCCGGTGCACTCCTGTATGCAGTGACAGCCTGCGCAGTCCCTACTGTGCGCGCTGGTGCTTGGAGTGACTTGCAGGAGgtatgtcaatggagaattagcctgaatgagggtgtgagcagggggatgcc #### Csf2ra_ID13432_8 --> 0 - 1 Original Alignment GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATG-AAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCg gtttcatactttcagccccaccccctggaacaaaaacatttatttttaagGTGCTTGTTGTGGAGGAGACCCGCCTCGCCTTCCCTAGCCCTGCCCCCCATGGATGGCACAAGGTCAAAGTCCGGGCAGGTGACACAAGGATGCAAGCACTGGGGTAAATGG------GCCCATCCTCTGggtatgatgaggaggccccacccattccccaggaaacctgccccctgtcca Alignment from CESAR GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATG-AAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCg gtttcatactttcagccccaccccctggaacaaaaacatttatttttaagGTGCTTGTTGTGGAGGAGACCCGCCTCGCCTTCCCTAGCCCTGCCCCCCATGGATGGCACAAGGTCAAAGTCCGGGCAGGTGACACAAGGATGCAAGCACTGGGGTAAATGG------GCCCATCCTCTGggtatgatgaggaggccccacccattccccaggaaacctgccccctgtcca Alignment from Spaln_aa2Genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATG-AAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG gtttcatactttcagccccaccccctggaacaaaaacatttatttttaagGTGCTTGTTGTGGAGGAGACCCGCCTCGCCTTCCCTAGCCCTGCCCCCCATGGATGGCACAAGGTCAAAGTCCGGGCAGGTGACACAAGGATGcAAGCACTGGGGTAAATGG------GCCCATCCTCTGGgtatgatgaggaggccccacccattccccaggaaacctgccccctgtcca Alignment from Spaln_nt2Genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATG-AAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG gtttcatactttcagccccaccccctggaacaaaaacatttatttttaagGTGCTTGTTGTGGAGGAGACCCGCCTCGCCTTCCCTAGCCCTGCCCCCCATGGATGGCACAAGGTCAAAGTCCGGGCAGGTGACACAAGGATGCAAGCACTGGGGTAAATGG------GCCCATCCTCTGGgtatgatgaggaggccccacccattccccaggaaacctgccccctgtcca Alignment from Pairagon GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATG-AAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG gtttcatactttcagccccaccccctggaacaaaaacatttatttttaagGTGCTTGTTGTGGAGGAGACCCGCCTCGCCTTCCCTAGCCCTGCCCCCCATGGATGGCACAAGGTCAAAGTCCGGGCAGGTGACACAAGGATGCAAGCACTGGGGTAAATGG------GCCCATCCTCTGGgtatgatgaggaggccccacccattccccaggaaacctgccccctgtcca Alignment from Exonerate_protein2genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATG-AAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG gtttcatactttcagccccaccccctggaacaaaaacatttatttttaagGTGCTTGTTGTGGAGGAGACCCGCCTCGCCTTCCCTAGCCCTGCCCCCCATGGATGGCACAAGGTCAAAGTCCGGGCAGGTGACACAAGGATGCAAGCACTGGGGTAAATGG------GCCCATCCTCTGGgtatgatgaggaggccccacccattccccaggaaacctgccccctgtcca Alignment from Exonerate_coding2genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATG-AAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG gtttcatactttcagccccaccccctggaacaaaaacatttatttttaagGTGCTTGTTGTGGAGGAGACCCGCCTCGCCTTCCCTAGCCCTGCCCCCCATGGATGGCACAAGGTCAAAGTCCGGGCAGGTGACACAAGGATGCAAGCACTGGGGTAAATGG------GCCCATCCTCTGGgtatgatgaggaggccccacccattccccaggaaacctgccccctgtcca Alignment from GeneWise GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATG-AAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG gtttcatactttcagccccaccccctggaacaaaaacatttatttttaagGTGCTTGTTGTGGAGGAGACCCGCCTCGCCTTCCCTAGCCCTGCCCCCCATGGATGGCACAAGGTCAAAGTCCGGGCAGGTGACACAAGGATGCAAGCACTGGGGTAAATGG------GCCCATCCTCTGGgtatgatgaggaggccccacccattccccaggaaacctgccccctgtcca #### Ctsf_ID675_3 --> 0 - 1 Original Alignment CTCTGCAGTTTTGAAGTC-CTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAg gatcttgtttcaagctgttccaagtttgtccctctctccctgcccgcaagCTCTGTAGTTTTGAAGCCCCTTGAAGAACTCAAGGAACACTTGCTCCTGAGGAGGGACTGTAGCCCAGTGAATGCCAGGGTCACAggtgagtgattactcaaggagactgggaagagcccagatcatacccaagta Alignment from CESAR CTCTGCAGTTTTGAAGTC-CTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAg gatcttgtttcaagctgttccaagtttgtccctctctccctgcccgcaagCTCTGTAGTTTTGAAGCCCCTTGAAGAACTCAAGGAACACTTGCTCCTGAGGAGGGACTGTAGCCCAGTGAATGCCAGGGTCACAggtgagtgattactcaaggagactgggaagagcccagatcatacccaagta Alignment from Spaln_aa2Genome TTTTGAAGTC---------CTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG gatcttgtttcaagctgttccaagtttgtccctctctccctgcccgcaagCTCTGTAGTTTTGAAGCCCCTTGAAGAACTCAAGGAACACTTGCTCCTGAGGAGGGACTGTAGCCCAGTGAATGCCAGGGTCACAGgtgagtgattactcaaggagactgggaagagcccagatcatacccaagta Alignment from Spaln_nt2Genome CTCTGCAGTTTTGAAGTCC-TGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG gatcttgtttcaagctgttccaagtttgtccctctctccctgcccgcaagCTCTGTAGTTTTGAAGCCCCTTGAAGAACTCAAGGAACACTTGCTCCTGAGGAGGGACTGTAGCCCAGTGAATGCCAGGGTCACAGgtgagtgattactcaaggagactgggaagagcccagatcatacccaagta Alignment from Pairagon CTCTGCAGTTTTGAAG-TCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG gatcttgtttcaagctgttccaagtttgtccctctctccctgcccgcaagCTCTGTAGTTTTGAAGCCCCTTGAAGAACTCAAGGAACACTTGCTCCTGAGGAGGGACTGTAGCCCAGTGAATGCCAGGGTCACAGgtgagtgattactcaaggagactgggaagagcccagatcatacccaagta Alignment from Exonerate_protein2genome CTCTGCAGTTTTGAAGTC-CTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG gatcttgtttcaagctgttccaagtttgtccctctctccctgcccgcaagCTCTGTAGTTTTGAAGCCCCTTGAAGAACTCAAGGAACACTTGCTCCTGAGGAGGGACTGTAGCCCAGTGAATGCCAGGGTCACAGgtgagtgattactcaaggagactgggaagagcccagatcatacccaagta Alignment from Exonerate_coding2genome CTCTGCAGTTTTGAAGTC-CTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG gatcttgtttcaagctgttccaagtttgtccctctctccctgcccgcaagCTCTGTAGTTTTGAAGCCCCTTGAAGAACTCAAGGAACACTTGCTCCTGAGGAGGGACTGTAGCCCAGTGAATGCCAGGGTCACAGgtgagtgattactcaaggagactgggaagagcccagatcatacccaagta Alignment from GeneWise ----------TTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG gatcttgtttcaagctgttccaagtttgtccctctctccctgcccgcaagCTCTGTAGTTTTGAAGCCCCTTGAAGAACTCAAGGAACACTTGCTCCTGAGGAGGGACTGTAGCCCAGTGAATGCCAGGGTCACAGgtgagtgattactcaaggagactgggaagagcccagatcatacccaagta #### Ctsf_ID679_7 --> 2 - 0 Original Alignment agGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAA-TGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAGAACCAG atgggtctggcttcaaatactcatctctagggcctgttcttttgttccagagGAGGAATTCCACACCATCTACCTGATTCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAATCCATAAATGAGCTTGCCCCGCCTGAACTGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTGAAGAACCAGgtgagtgtaactaggaattggaaggggtaactaggaattggaaagcagac Alignment from CESAR agGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAA-TGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAGAACCAG atgggtctggcttcaaatactcatctctagggcctgttcttttgttccagagGAGGAATTCCACACCATCTACCTGATTCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAATCCATAAATGAGCTTGCCCCGCCTGAACTGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTGAAGAACCAGgtgagtgtaactaggaattggaaggggtaactaggaattggaaagcagac Alignment from Spaln_aa2Genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAA-TGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAGAACCAG atgggtctggcttcaaatactcatctctagggcctgttcttttgttccagAGGAGGAATTCCACACCATCTACCTGATTCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAATCCATAAATGAGCTTGCCCCGCCTGAAcTGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTGAAGAACCAGgtgagtgtaactaggaattggaaggggtaactaggaattggaaagcagac Alignment from Spaln_nt2Genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAA-TGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAGAACCAG atgggtctggcttcaaatactcatctctagggcctgttcttttgttccagAGGAGGAATTCCACACCATCTACCTGATTCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAATCCATAAATGAGCTTGCCCCGCCTGAACTGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTGAAGAACCAGgtgagtgtaactaggaattggaaggggtaactaggaattggaaagcagac Alignment from Pairagon AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAA-TGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAGAACCAG atgggtctggcttcaaatactcatctctagggcctgttcttttgttccagAGGAGGAATTCCACACCATCTACCTGATTCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAATCCATAAATGAGCTTGCCCCGCCTGAACTGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTGAAGAACCAGgtgagtgtaactaggaattggaaggggtaactaggaattggaaagcagac Alignment from Exonerate_protein2genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAA-TGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAGAACCAG atgggtctggcttcaaatactcatctctagggcctgttcttttgttccagAGGAGGAATTCCACACCATCTACCTGATTCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAATCCATAAATGAGCTTGCCCCGCCTGAACTGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTGAAGAACCAGgtgagtgtaactaggaattggaaggggtaactaggaattggaaagcagac Alignment from Exonerate_coding2genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAA-TGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAGAACCAG atgggtctggcttcaaatactcatctctagggcctgttcttttgttccagAGGAGGAATTCCACACCATCTACCTGATTCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAATCCATAAATGAGCTTGCCCCGCCTGAACTGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTGAAGAACCAGgtgagtgtaactaggaattggaaggggtaactaggaattggaaagcagac Alignment from GeneWise AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCT-GAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTGAAGAACCAG atgggtctggcttcaaatactcatctctagggcctgttcttttgttccagAGGAGGAATTCCACACCATCTACCTGATTCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAATCCATAAATGAGCTTGCCCCGCCTGAACTGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTGAAGAACCAGgtgagtgtaactaggaattggaaggggtaactaggaattggaaagcagac #### Ctsf_ID682_10 --> 2 - 1 Original Alignment gaGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAAC-TTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATa tgggagaatttgagtagtaagtcatcaagccatctcttttctctccacaggaGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGTCATGTTCAGACCTGCAACCTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGTCAGAATGAAAATagtaggctggggtccctgtaggtgggtctgggttaatactgctgggctagg Alignment from CESAR gaGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAAC-TTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATa tgggagaatttgagtagtaagtcatcaagccatctcttttctctccacaggaGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGTCATGTTCAGACCTGCAACCTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGTCAGAATGAAAATagtaggctggggtccctgtaggtgggtctgggttaatactgctgggctagg Alignment from Spaln_aa2Genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAAC-TTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcatcaagccatctcttttctctccacagGAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGTCATGTTCAGACCTGCAACcTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGTCAGAATGAAAATAgtaggctggggtccctgtaggtgggtctgggttaatactgctgggctagg Alignment from Spaln_nt2Genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAA-CTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcatcaagccatctcttttctctccacagGAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGTCATGTTCAGACCTGCAACCTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGTCAGAATGAAAATAgtaggctggggtccctgtaggtgggtctgggttaatactgctgggctagg Alignment from Pairagon GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAA-CTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcatcaagccatctcttttctctccacagGAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGTCATGTTCAGACCTGCAACCTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGTCAGAATGAAAATAgtaggctggggtccctgtaggtgggtctgggttaatactgctgggctagg Alignment from Exonerate_protein2genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAAC-TTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcatcaagccatctcttttctctccacagGAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGTCATGTTCAGACCTGCAACCTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGTCAGAATGAAAATAgtaggctggggtccctgtaggtgggtctgggttaatactgctgggctagg Alignment from Exonerate_coding2genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAAC-TTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcatcaagccatctcttttctctccacagGAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGTCATGTTCAGACCTGCAACCTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGTCAGAATGAAAATAgtaggctggggtccctgtaggtgggtctgggttaatactgctgggctagg Alignment from GeneWise GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGC-AACTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA tgggagaatttgagtagtaagtcatcaagccatctcttttctctccacagGAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGTCATGTTCAGACCTGCAACCTTCTCAGCACAGATGGCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGTCAGAATGAAAATAgtaggctggggtccctgtaggtgggtctgggttaatactgctgggctagg #### Ctsf_ID683_11 --> 2 - 0 Original Alignment agATAGCAGCCTGGCTG-GCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaatactgctgggctagggtaccatgttttcttcttcctattcacagagATAGCAGCCTGGCTACGCCCAGAAAGGACCTATCTCAGTTGCCATTAATGCCTTTGGAATGCAGgtaaatttccaacctctctgtccctccccaactcaccagtaccttgatcc Alignment from CESAR agATAGCAGCCTGGCTG-GCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaatactgctgggctagggtaccatgttttcttcttcctattcacagagATAGCAGCCTGGCTACGCCCAGAAAGGACCTATCTCAGTTGCCATTAATGCCTTTGGAATGCAGgtaaatttccaacctctctgtccctccccaactcaccagtaccttgatcc Alignment from Spaln_aa2Genome AGATAGCAGCCTGGCTG-GCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaatactgctgggctagggtaccatgttttcttcttcctattcacagAGATAGCAGCCTGGCTAcGCCCAGAAAGGACCTATCTCAGTTGCCATTAATGCCTTTGGAATGCAGgtaaatttccaacctctctgtccctccccaactcaccagtaccttgatcc Alignment from Spaln_nt2Genome AGATAGCAGCCTGGCTG-GCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaatactgctgggctagggtaccatgttttcttcttcctattcacagAGATAGCAGCCTGGCTACGCCCAGAAAGGACCTATCTCAGTTGCCATTAATGCCTTTGGAATGCAGgtaaatttccaacctctctgtccctccccaactcaccagtaccttgatcc Alignment from Pairagon AGATAGCAGCCTGGCTG-GCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaatactgctgggctagggtaccatgttttcttcttcctattcacagAGATAGCAGCCTGGCTACGCCCAGAAAGGACCTATCTCAGTTGCCATTAATGCCTTTGGAATGCAGgtaaatttccaacctctctgtccctccccaactcaccagtaccttgatcc Alignment from Exonerate_protein2genome AGATAGCAGCCTGGCTG-GCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaatactgctgggctagggtaccatgttttcttcttcctattcacagAGATAGCAGCCTGGCTACGCCCAGAAAGGACCTATCTCAGTTGCCATTAATGCCTTTGGAATGCAGgtaaatttccaacctctctgtccctccccaactcaccagtaccttgatcc Alignment from Exonerate_coding2genome AGATAGCAGCCTGGCTG-GCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaatactgctgggctagggtaccatgttttcttcttcctattcacagAGATAGCAGCCTGGCTACGCCCAGAAAGGACCTATCTCAGTTGCCATTAATGCCTTTGGAATGCAGgtaaatttccaacctctctgtccctccccaactcaccagtaccttgatcc Alignment from GeneWise AGATAGCAGCCTGGCTG-GCCCAGAAAGGACCTATCTCAGTTGCCATTAACGCCTTCGGCATGCAG ggttaatactgctgggctagggtaccatgttttcttcttcctattcacagAGATAGCAGCCTGGCTACGCCCAGAAAGGACCTATCTCAGTTGCCATTAATGCCTTTGGAATGCAGgtaaatttccaacctctctgtccctccccaactcaccagtaccttgatcc #### Ctsf_ID684_12 --> 0 - 1 Original Alignment TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGAC-CATGCTGTGTTGCTGGTGGGCTATGGCAACc accttgatccctctttttgacgctggcctcctgtctgcttgcttacacagTTCTACCATCATGGAATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATTGACCCATGCAGTGTTGCTAGTAGGCTATGGCAACcgtactttctgttggcttcctgcttcccttccatctgcctcaggctccagt Alignment from CESAR TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGAC-CATGCTGTGTTGCTGGTGGGCTATGGCAACc accttgatccctctttttgacgctggcctcctgtctgcttgcttacacagTTCTACCATCATGGAATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATTGACCCATGCAGTGTTGCTAGTAGGCTATGGCAACcgtactttctgttggcttcctgcttcccttccatctgcctcaggctccagt Alignment from Spaln_aa2Genome TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGAC-CATGCTGTGTTGCTGGTGGGCTATGGCAACC accttgatccctctttttgacgctggcctcctgtctgcttgcttacacagTTCTACCATCATGGAATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATTGACcCATGCAGTGTTGCTAGTAGGCTATGGCAACCgtactttctgttggcttcctgcttcccttccatctgcctcaggctccagt Alignment from Spaln_nt2Genome TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGAC-CATGCTGTGTTGCTGGTGGGCTATGGCAACC accttgatccctctttttgacgctggcctcctgtctgcttgcttacacagTTCTACCATCATGGAATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATTGACCCATGCAGTGTTGCTAGTAGGCTATGGCAACCgtactttctgttggcttcctgcttcccttccatctgcctcaggctccagt Alignment from Pairagon TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGA-CCATGCTGTGTTGCTGGTGGGCTATGGCAACC accttgatccctctttttgacgctggcctcctgtctgcttgcttacacagTTCTACCATCATGGAATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATTGACCCATGCAGTGTTGCTAGTAGGCTATGGCAACCgtactttctgttggcttcctgcttcccttccatctgcctcaggctccagt Alignment from Exonerate_protein2genome TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGAC-CATGCTGTGTTGCTGGTGGGCTATGGCAACC accttgatccctctttttgacgctggcctcctgtctgcttgcttacacagTTCTACCATCATGGAATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATTGACCCATGCAGTGTTGCTAGTAGGCTATGGCAACCgtactttctgttggcttcctgcttcccttccatctgcctcaggctccagt Alignment from Exonerate_coding2genome TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATCGAC-CATGCTGTGTTGCTGGTGGGCTATGGCAACC accttgatccctctttttgacgctggcctcctgtctgcttgcttacacagTTCTACCATCATGGAATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATTGACCCATGCAGTGTTGCTAGTAGGCTATGGCAACCgtactttctgttggcttcctgcttcccttccatctgcctcaggctccagt Alignment from GeneWise TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATC-GACCATGCTGTGTTGCTGGTGGGCTATGGCAACC accttgatccctctttttgacgctggcctcctgtctgcttgcttacacagTTCTACCATCATGGAATTGCTCACCCATTCCGGCCCCTCTGCAGCCCTTGGTTCATTGACCCATGCAGTGTTGCTAGTAGGCTATGGCAACCgtactttctgttggcttcctgcttcccttccatctgcctcaggctccagt #### Cyp17a1_ID9995_5 --> 0 - 0 Original Alignment GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACT-GGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ttggaagtgaggtgccgttcatgctcttgtcctcttgcccatgatttcagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAAATGAATGCAGAAAATAATAACACCCGGAGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCAGGGTGGGAGACATCTTA------GGCATAGAGACCACTAGCTCTGTACTGAACTGGATACTGGCTTTCCTAGTGCACAATCCTGAGgcatgtgtctctccaactctggtcttgtctactagccaaccactatgggg Alignment from CESAR GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACT-GGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ttggaagtgaggtgccgttcatgctcttgtcctcttgcccatgatttcagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAAATGAATGCAGAAAATAATAACACCCGGAGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCAGGGTGGGAGACATCTTA------GGCATAGAGACCACTAGCTCTGTACTGAACTGGATACTGGCTTTCCTAGTGCACAATCCTGAGgcatgtgtctctccaactctggtcttgtctactagccaaccactatgggg Alignment from Spaln_aa2Genome GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACT-GGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ttggaagtgaggtgccgttcatgctcttgtcctcttgcccatgatttcagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAAATGAATGCAGAAAATAATAACACCcGGAGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCAGGGTGGGAGACATCTTA------GGCATAGAGACCACTAGCTCTGTACTGAACTGGATACTGGCTTTCCTAGTGCACAATCCTGAGgcatgtgtctctccaactctggtcttgtctactagccaaccactatgggg Alignment from Spaln_nt2Genome GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGG-GAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ttggaagtgaggtgccgttcatgctcttgtcctcttgcccatgatttcagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAAATGAATGCAGAAAATAATAACACCCGGAGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCAGGGTGGGAGACATCTT------AGGCATAGAGACCACTAGCTCTGTACTGAACTGGATACTGGCTTTCCTAGTGCACAATCCTGAGgcatgtgtctctccaactctggtcttgtctactagccaaccactatgggg Alignment from Pairagon GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACA-CTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ttggaagtgaggtgccgttcatgctcttgtcctcttgcccatgatttcagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAAATGAATGCAGAAAATAATAACACCCGGAGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCAGGGTGGGAGACATCTT------AGGCATAGAGACCACTAGCTCTGTACTGAACTGGATACTGGCTTTCCTAGTGCACAATCCTGAGgcatgtgtctctccaactctggtcttgtctactagccaaccactatgggg Alignment from Exonerate_protein2genome GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACT-GGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ttggaagtgaggtgccgttcatgctcttgtcctcttgcccatgatttcagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAAATGAATGCAGAAAATAATAACACCCGGAGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCAGGGTGGGAGACATCTTA------GGCATAGAGACCACTAGCTCTGTACTGAACTGGATACTGGCTTTCCTAGTGCACAATCCTGAGgcatgtgtctctccaactctggtcttgtctactagccaaccactatgggg Alignment from Exonerate_coding2genome GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACT-GGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG ttggaagtgaggtgccgttcatgctcttgtcctcttgcccatgatttcagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAAATGAATGCAGAAAATAATAACACCCGGAGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCAGGGTGGGAGACATCTTA------GGCATAGAGACCACTAGCTCTGTACTGAACTGGATACTGGCTTTCCTAGTGCACAATCCTGAGgcatgtgtctctccaactctggtcttgtctactagccaaccactatgggg Alignment from GeneWise GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAAC-ACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAGGTGAAG ttggaagtgaggtgccgttcatgctcttgtcctcttgcccatgatttcagGAGAAATTCAATAGTGAGTCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAAATGAATGCAGAAAATAATAACACCCGGAGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCAGGGTGGGAGACATCTTAGGC------ATAGAGACCACTAGCTCTGTACTGAACTGGATACTGGCTTTCCTAGTGCACAATCCTGAGGCATGTgtctctccaactctggtcttgtctactagccaaccactatgggg #### Cyp26a1_ID7415_3 --> 0 - 0 Original Alignment GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGC-GAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG ggggctgaatgaaggaaaggattgtaactgtgtatgtgtgttctctgcagGTTATTATGCAGGCATTCAGCCGTGAGGCACTTCAGTGTTACGTTCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGCGAACGTGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCCTGCTAGGCTGTCGAGCCGGGCCCAGCGGGCAGCGGGGAGGATGAGCAGCAGCTTGTGGAGGCTTTCGAGGAAATGACCCGCAATCTCTTCTCTCTTCCCATTGATGTCCCATTTAGCGGTTTGTACCGGgtgagcgtggtttggggagctagagtctgcacaggcaaaggcagtccact Alignment from CESAR GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGC-GAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG ggggctgaatgaaggaaaggattgtaactgtgtatgtgtgttctctgcagGTTATTATGCAGGCATTCAGCCGTGAGGCACTTCAGTGTTACGTTCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGCGAACGTGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCCTGCTAGGCTGTCGAGCCGGGCCCAGCGGGCAGCGGGGAGGATGAGCAGCAGCTTGTGGAGGCTTTCGAGGAAATGACCCGCAATCTCTTCTCTCTTCCCATTGATGTCCCATTTAGCGGTTTGTACCGGgtgagcgtggtttggggagctagagtctgcacaggcaaaggcagtccact Alignment from Spaln_aa2Genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGC-GAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG ggggctgaatgaaggaaaggattgtaactgtgtatgtgtgttctctgcagGTTATTATGCAGGCATTCAGCCGTGAGGCACTTCAGTGTTACGTTCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGCGAACGTGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCCTGCTAGGCTGTcGAGCCGGGCCCAGCGGGCAGCGGGGAGGATGAGCAGCAGCTTGTGGAGGCTTTCGAGGAAATGACCCGCAATCTCTTCTCTCTTCCCATTGATGTCCCATTTAGCGGTTTGTACCGGgtgagcgtggtttggggagctagagtctgcacaggcaaaggcagtccact Alignment from Spaln_nt2Genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTG-CGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG ggggctgaatgaaggaaaggattgtaactgtgtatgtgtgttctctgcagGTTATTATGCAGGCATTCAGCCGTGAGGCACTTCAGTGTTACGTTCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGCGAACGTGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCCTGCTAGGCTGTCGAGCCGGGCCCAGCGGGCAGCGGGGAGGATGAGCAGCAGCTTGTGGAGGCTTTCGAGGAAATGACCCGCAATCTCTTCTCTCTTCCCATTGATGTCCCATTTAGCGGTTTGTACCGGgtgagcgtggtttggggagctagagtctgcacaggcaaaggcagtccact Alignment from Pairagon GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTG-CGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG ggggctgaatgaaggaaaggattgtaactgtgtatgtgtgttctctgcagGTTATTATGCAGGCATTCAGCCGTGAGGCACTTCAGTGTTACGTTCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGCGAACGTGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCCTGCTAGGCTGTCGAGCCGGGCCCAGCGGGCAGCGGGGAGGATGAGCAGCAGCTTGTGGAGGCTTTCGAGGAAATGACCCGCAATCTCTTCTCTCTTCCCATTGATGTCCCATTTAGCGGTTTGTACCGGgtgagcgtggtttggggagctagagtctgcacaggcaaaggcagtccact Alignment from Exonerate_protein2genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGC-GAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG ggggctgaatgaaggaaaggattgtaactgtgtatgtgtgttctctgcagGTTATTATGCAGGCATTCAGCCGTGAGGCACTTCAGTGTTACGTTCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGCGAACGTGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCCTGCTAGGCTGTCGAGCCGGGCCCAGCGGGCAGCGGGGAGGATGAGCAGCAGCTTGTGGAGGCTTTCGAGGAAATGACCCGCAATCTCTTCTCTCTTCCCATTGATGTCCCATTTAGCGGTTTGTACCGGgtgagcgtggtttggggagctagagtctgcacaggcaaaggcagtccact Alignment from Exonerate_coding2genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGC-GAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG ggggctgaatgaaggaaaggattgtaactgtgtatgtgtgttctctgcagGTTATTATGCAGGCATTCAGCCGTGAGGCACTTCAGTGTTACGTTCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGCGAACGTGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCCTGCTAGGCTGTCGAGCCGGGCCCAGCGGGCAGCGGGGAGGATGAGCAGCAGCTTGTGGAGGCTTTCGAGGAAATGACCCGCAATCTCTTCTCTCTTCCCATTGATGTCCCATTTAGCGGTTTGTACCGGgtgagcgtggtttggggagctagagtctgcacaggcaaaggcagtccact Alignment from GeneWise GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGC-GAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG-------------------------------------------------- ggggctgaatgaaggaaaggattgtaactgtgtatgtgtgttctctgcagGTTATTATGCAGGCATTCAGCCGTGAGGCACTTCAGTGTTACGTTCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGCGAACGTGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCCTGCTAGGCTGTCGAGCCGGGCCCAGCGGGCAGCGGGGAGGATGAGCAGCAGCTTGTGGAGGCTTTCGAGGAAATGACCCGCAATCTCTTCTCTCTTCCCATTGATGTCCCATTTAGCGGTTTGTACCGGGTGAGCGTGGTTTGGGGAGCTAGAGTCTGCACAGGCAAAGGCAGTCCACT #### Cyp26a1_ID7416_4 --> 0 - 0 Original Alignment GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCG-CTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG tctgcacaggcaaaggcagtccactcacacttctgtatctaactccacagGGTGTTAAGGCACGCAACCTTATACATGCACGCATTGAGGAGAACATTCGTGCAAATATCCGCCGGCTTCAGGCTACAGAGCCAGACGGGGGTTGCAAAGATGCACTTGCAGCTCCTGATTGAGCACTCGTGGGAA---GGAGAGCAATTGGACACACAGgtaggtagcaatctcaaaaggtgtcaaaggccagctttgcgttgtccgga Alignment from CESAR GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCG-CTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG tctgcacaggcaaaggcagtccactcacacttctgtatctaactccacagGGTGTTAAGGCACGCAACCTTATACATGCACGCATTGAGGAGAACATTCGTGCAAATATCCGCCGGCTTCAGGCTACAGAGCCAGACGGGGGTTGCAAAGATGCACTTGCAGCTCCTGATTGAGCACTCGTGGGAA---GGAGAGCAATTGGACACACAGgtaggtagcaatctcaaaaggtgtcaaaggccagctttgcgttgtccgga Alignment from Spaln_aa2Genome GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCTG-CAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG tctgcacaggcaaaggcagtccactcacacttctgtatctaactccacagGGTGTTAAGGCACGCAACCTTATACATGCACGCATTGAGGAGAACATTCGTGCAAATATCCGCCGGCTTCAGGCTACAGAGCCAGACGGGGGTTGCAAAGATGCACTTgCAGCTCCTGATTGAGCACTCGTGGGAA---GGAGAGCAATTGGACACACAGgtaggtagcaatctcaaaaggtgtcaaaggccagctttgcgttgtccgga Alignment from Spaln_nt2Genome GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGCT-GCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG tctgcacaggcaaaggcagtccactcacacttctgtatctaactccacagGGTGTTAAGGCACGCAACCTTATACATGCACGCATTGAGGAGAACATTCGTGCAAATATCCGCCGGCTTCAGGCTACAGAGCCAGACGGGGGTTGCAAAGATGCACTTGCAGCTCCTGATTGAGCACTCGTGGGA---AGGAGAGCAATTGGACACACAGgtaggtagcaatctcaaaaggtgtcaaaggccagctttgcgttgtccgga Alignment from Pairagon GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCGC-TGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG tctgcacaggcaaaggcagtccactcacacttctgtatctaactccacagGGTGTTAAGGCACGCAACCTTATACATGCACGCATTGAGGAGAACATTCGTGCAAATATCCGCCGGCTTCAGGCTACAGAGCCAGACGGGGGTTGCAAAGATGCACTTGCAGCTCCTGATTGAGCACTCGTGGGA---AGGAGAGCAATTGGACACACAGgtaggtagcaatctcaaaaggtgtcaaaggccagctttgcgttgtccgga Alignment from Exonerate_protein2genome GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCG-CTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG tctgcacaggcaaaggcagtccactcacacttctgtatctaactccacagGGTGTTAAGGCACGCAACCTTATACATGCACGCATTGAGGAGAACATTCGTGCAAATATCCGCCGGCTTCAGGCTACAGAGCCAGACGGGGGTTGCAAAGATGCACTTGCAGCTCCTGATTGAGCACTCGTGGGAA---GGAGAGCAATTGGACACACAGgtaggtagcaatctcaaaaggtgtcaaaggccagctttgcgttgtccgga Alignment from Exonerate_coding2genome GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGACGCG-CTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG tctgcacaggcaaaggcagtccactcacacttctgtatctaactccacagGGTGTTAAGGCACGCAACCTTATACATGCACGCATTGAGGAGAACATTCGTGCAAATATCCGCCGGCTTCAGGCTACAGAGCCAGACGGGGGTTGCAAAGATGCACTTGCAGCTCCTGATTGAGCACTCGTGGGAA---GGAGAGCAATTGGACACACAGgtaggtagcaatctcaaaaggtgtcaaaggccagctttgcgttgtccgga Alignment from GeneWise --------------------------------------------------GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGAC-GCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG TCTGCACAGGCAAAGGCAGTCCACTCACACTTCTGTATCTAACTCCACAGGGTGTTAAGGCACGCAACCTTATACATGCACGCATTGAGGAGAACATTCGTGCAAATATCCGCCGGCTTCAGGCTACAGAGCCAGACGGGGGTTGCAAAGATGCACTTGCAGCTCCTGATTGAGCACTCGTGGGAA---GGAGAGCAATTGGACACACAGgtaggtagcaatctcaaaaggtgtcaaaggccagctttgcgttgtccgga #### Cyp2c37_ID7840_3 --> 2 - 1 Original Alignment gcCTTGCATTTAGTAAA-GGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg ttcttttgtccctaggaggtactctatagctgacggacttcttttttaaggcCTTACATTTAGTAAACGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCATGCCTTTGCGGAATTTAGGTATGGGGAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCGCATTGCCTTGTGGAGGAACTTAGGAAAACCAATggtacgtgtaggtttagaacctaatccagttatggcaatatcagtgatttt Alignment from CESAR gcCTTGCATTTAGTAAA-GGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg ttcttttgtccctaggaggtactctatagctgacggacttcttttttaaggcCTTACATTTAGTAAACGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCATGCCTTTGCGGAATTTAGGTATGGGGAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCGCATTGCCTTGTGGAGGAACTTAGGAAAACCAATggtacgtgtaggtttagaacctaatccagttatggcaatatcagtgatttt Alignment from Spaln_aa2Genome GTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttcttttgtccctaggaggtactctatagctgacggacttcttttttaaggccttacatttagTAAACGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCATGCCTTTGCGGAATTTAGGTATGGGGAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCGCATTGCCTTGTGGAGGAACTTAGGAAAACCAATGgtacgtgtaggtttagaacctaatccagttatggcaatatcagtgatttt Alignment from Spaln_nt2Genome GCCTTGCATTTAGTAAA-GGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttcttttgtccctaggaggtactctatagctgacggacttcttttttaagGCCTTACATTTAGTAAACGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCATGCCTTTGCGGAATTTAGGTATGGGGAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCGCATTGCCTTGTGGAGGAACTTAGGAAAACCAATGgtacgtgtaggtttagaacctaatccagttatggcaatatcagtgatttt Alignment from Pairagon GCCTTGCATTTAGTAAA-GGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttcttttgtccctaggaggtactctatagctgacggacttcttttttaagGCCTTACATTTAGTAAACGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCATGCCTTTGCGGAATTTAGGTATGGGGAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCGCATTGCCTTGTGGAGGAACTTAGGAAAACCAATGgtacgtgtaggtttagaacctaatccagttatggcaatatcagtgatttt Alignment from Exonerate_protein2genome GCCTTGCATTTAGTAAA-GGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttcttttgtccctaggaggtactctatagctgacggacttcttttttaagGCCTTACATTTAGTAAACGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCATGCCTTTGCGGAATTTAGGTATGGGGAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCGCATTGCCTTGTGGAGGAACTTAGGAAAACCAATGgtacgtgtaggtttagaacctaatccagttatggcaatatcagtgatttt Alignment from Exonerate_coding2genome GCCTTGCATTTAGTAAA-GGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttcttttgtccctaggaggtactctatagctgacggacttcttttttaagGCCTTACATTTAGTAAACGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCATGCCTTTGCGGAATTTAGGTATGGGGAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCGCATTGCCTTGTGGAGGAACTTAGGAAAACCAATGgtacgtgtaggtttagaacctaatccagttatggcaatatcagtgatttt Alignment from GeneWise GTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ttcttttgtccctaggaggtactctatagctgacggacttcttttttaaggccttacatttagTAAACGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCATGCCTTTGCGGAATTTAGGTATGGGGAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCGCATTGCCTTGTGGAGGAACTTAGGAAAACCAATGgtacgtgtaggtttagaacctaatccagttatggcaatatcagtgatttt #### Cyp2c39_ID7783_2 --> 0 - 1 Original Alignment TTCTCAAAAGCCTATGGCCCTGTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAGGAGTTTTCTGATAGAGGAAGCATTCCAATGGTAGAAAAG-ATTAATAACGGCCTTg tcctaaaagtacatgttcactagggtttaatgtttatgtgttcattaaagTTTTCAAAAGCCTATGGCCCTCTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAAGAGTTCTCTGACAGAGGAAGCATTCCAATGGTAGACAAGCATTAATAATGGCCTAggtgagtaagtgagtatattcatgtgcagattaagcagtattgactatgag Alignment from CESAR TTCTCAAAAGCCTATGGCCCTGTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAGGAGTTTTCTGATAGAGGAAGCATTCCAATGGTAGAAAAG-ATTAATAACGGCCTTg tcctaaaagtacatgttcactagggtttaatgtttatgtgttcattaaagTTTTCAAAAGCCTATGGCCCTCTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAAGAGTTCTCTGACAGAGGAAGCATTCCAATGGTAGACAAGCATTAATAATGGCCTAggtgagtaagtgagtatattcatgtgcagattaagcagtattgactatgag Alignment from Spaln_aa2Genome TTCTCAAAAGCCTATGGCCCTGTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAGGAGTTTTCTGATAGAGGAAGCATTCCAATGGTAGAAAAG-ATTAATAACGGCCTTG tcctaaaagtacatgttcactagggtttaatgtttatgtgttcattaaagTTTTCAAAAGCCTATGGCCCTCTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAAGAGTTCTCTGACAGAGGAAGCATTCCAATGGTAGACAAGcATTAATAATGGCCTAGgtgagtaagtgagtatattcatgtgcagattaagcagtattgactatgag Alignment from Spaln_nt2Genome TTCTCAAAAGCCTATGGCCCTGTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAGGAGTTTTCTGATAGAGGAAGCATTCCAATGGTAGAAAAG-ATTAATAACGGCCTTG tcctaaaagtacatgttcactagggtttaatgtttatgtgttcattaaagTTTTCAAAAGCCTATGGCCCTCTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAAGAGTTCTCTGACAGAGGAAGCATTCCAATGGTAGACAAGCATTAATAATGGCCTAGgtgagtaagtgagtatattcatgtgcagattaagcagtattgactatgag Alignment from Pairagon TTCTCAAAAGCCTATGGCCCTGTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAGGAGTTTTCTGATAGAGGAAGCATTCCAATGGTAGAAAAG-ATTAATAACGGCCTTG tcctaaaagtacatgttcactagggtttaatgtttatgtgttcattaaagTTTTCAAAAGCCTATGGCCCTCTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAAGAGTTCTCTGACAGAGGAAGCATTCCAATGGTAGACAAGCATTAATAATGGCCTAGgtgagtaagtgagtatattcatgtgcagattaagcagtattgactatgag Alignment from Exonerate_protein2genome TTCTCAAAAGCCTATGGCCCTGTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAGGAGTTTTCTGATAGAGGAAGCATTCCAATGGTAGAAAAG-ATTAATAACGGCCTTG tcctaaaagtacatgttcactagggtttaatgtttatgtgttcattaaagTTTTCAAAAGCCTATGGCCCTCTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAAGAGTTCTCTGACAGAGGAAGCATTCCAATGGTAGACAAGCATTAATAATGGCCTAGgtgagtaagtgagtatattcatgtgcagattaagcagtattgactatgag Alignment from Exonerate_coding2genome TTCTCAAAAGCCTATGGCCCTGTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAGGAGTTTTCTGATAGAGGAAGCATTCCAATGGTAGAAAAG-ATTAATAACGGCCTTG tcctaaaagtacatgttcactagggtttaatgtttatgtgttcattaaagTTTTCAAAAGCCTATGGCCCTCTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAAGAGTTCTCTGACAGAGGAAGCATTCCAATGGTAGACAAGCATTAATAATGGCCTAGgtgagtaagtgagtatattcatgtgcagattaagcagtattgactatgag Alignment from GeneWise TTCTCAAAAGCCTATGGCCCTGTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAGGAGTTTTCTGATAGAGGAAGCATTCCAATGGTAGAAAAG-ATTAATAACGGCCTTG tcctaaaagtacatgttcactagggtttaatgtttatgtgttcattaaagTTTTCAAAAGCCTATGGCCCTCTGTTCACTCTGTATTTGGGCTCACGGCCCACTGTTGTATTACATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCATGGGGAAGAGTTCTCTGACAGAGGAAGCATTCCAATGGTAGACAAGCATTAATAATGGCCTAGgtgagtaagtgagtatattcatgtgcagattaagcagtattgactatgag #### Cyp2c50_ID7861_2 --> 0 - 1 Original Alignment TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAG-CCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg tgaaaatgcagttaaatcttcctaatataactctctctctgtctttccagTTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAGGAAGCCCTACTGTGGTGTTGCATGGATACGAGGCAGTGAAGGAAGCTTTAGTTGACCATGGGGAGGAATTTGCTGGAAGAGGAAGGCTACCAGTTTTTGATAAAGCTACTAATGGGATGggtagatatacttgcagtgcagagtagcctagtgagcgacagaaaagattg Alignment from CESAR TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCC-ACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg tgaaaatgcagttaaatcttcctaatataactctctctctgtctttccagTTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAGGAAGCCCTACTGTGGTGTTGCATGGATACGAGGCAGTGAAGGAAGCTTTAGTTGACCATGGGGAGGAATTTGCTGGAAGAGGAAGGCTACCAGTTTTTGATAAAGCTACTAATGGGATGggtagatatacttgcagtgcagagtagcctagtgagcgacagaaaagattg Alignment from Spaln_aa2Genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAG-CCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgaaaatgcagttaaatcttcctaatataactctctctctgtctttccagTTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAGGAAGcCCTACTGTGGTGTTGCATGGATACGAGGCAGTGAAGGAAGCTTTAGTTGACCATGGGGAGGAATTTGCTGGAAGAGGAAGGCTACCAGTTTTTGATAAAGCTACTAATGGGATGGgtagatatacttgcagtgcagagtagcctagtgagcgacagaaaagattg Alignment from Spaln_nt2Genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAG-CCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgaaaatgcagttaaatcttcctaatataactctctctctgtctttccagTTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAGGAAGCCCTACTGTGGTGTTGCATGGATACGAGGCAGTGAAGGAAGCTTTAGTTGACCATGGGGAGGAATTTGCTGGAAGAGGAAGGCTACCAGTTTTTGATAAAGCTACTAATGGGATGGgtagatatacttgcagtgcagagtagcctagtgagcgacagaaaagattg Alignment from Pairagon TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCC-ACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgaaaatgcagttaaatcttcctaatataactctctctctgtctttccagTTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAGGAAGCCCTACTGTGGTGTTGCATGGATACGAGGCAGTGAAGGAAGCTTTAGTTGACCATGGGGAGGAATTTGCTGGAAGAGGAAGGCTACCAGTTTTTGATAAAGCTACTAATGGGATGGgtagatatacttgcagtgcagagtagcctagtgagcgacagaaaagattg Alignment from Exonerate_protein2genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAG-CCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgaaaatgcagttaaatcttcctaatataactctctctctgtctttccagTTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAGGAAGCCCTACTGTGGTGTTGCATGGATACGAGGCAGTGAAGGAAGCTTTAGTTGACCATGGGGAGGAATTTGCTGGAAGAGGAAGGCTACCAGTTTTTGATAAAGCTACTAATGGGATGGgtagatatacttgcagtgcagagtagcctagtgagcgacagaaaagattg Alignment from Exonerate_coding2genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAG-CCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgaaaatgcagttaaatcttcctaatataactctctctctgtctttccagTTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAGGAAGCCCTACTGTGGTGTTGCATGGATACGAGGCAGTGAAGGAAGCTTTAGTTGACCATGGGGAGGAATTTGCTGGAAGAGGAAGGCTACCAGTTTTTGATAAAGCTACTAATGGGATGGgtagatatacttgcagtgcagagtagcctagtgagcgacagaaaagattg Alignment from GeneWise TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGG-AAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgaaaatgcagttaaatcttcctaatataactctctctctgtctttccagTTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAGGAAGCCCTACTGTGGTGTTGCATGGATACGAGGCAGTGAAGGAAGCTTTAGTTGACCATGGGGAGGAATTTGCTGGAAGAGGAAGGCTACCAGTTTTTGATAAAGCTACTAATGGGATGGgtagatatacttgcagtgcagagtagcctagtgagcgacagaaaagattg #### Cyp2c50_ID7862_3 --> 2 - 1 Original Alignment gcATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTT-AGGAAAACCAATg aaaagattgcagagcccaactctgtctatgcctccattctccccacccaggaATTATATTTAGTAAAGGAAATGTGTGGAAAAACATAAGGCGCTTCTCACTTACAACTCTGCGGAACTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTTGAGGAACTTCCGGAAAACCAATggtacgcgcgggtgtagactcagaacttggtgtgattttattcgtggctga Alignment from CESAR gcATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTT-AGGAAAACCAATg aaaagattgcagagcccaactctgtctatgcctccattctccccacccaggaATTATATTTAGTAAAGGAAATGTGTGGAAAAACATAAGGCGCTTCTCACTTACAACTCTGCGGAACTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTTGAGGAACTTCCGGAAAACCAATggtacgcgcgggtgtagactcagaacttggtgtgattttattcgtggctga Alignment from Spaln_aa2Genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTT-AGGAAAACCAATG aaaagattgcagagcccaactctgtctatgcctccattctccccacccagGAATTATATTTAGTAAAGGAAATGTGTGGAAAAACATAAGGCGCTTCTCACTTACAACTCTGCGGAACTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTTGAGGAACTTcCGGAAAACCAATGgtacgcgcgggtgtagactcagaacttggtgtgattttattcgtggctga Alignment from Spaln_nt2Genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTA-GGAAAACCAATG aaaagattgcagagcccaactctgtctatgcctccattctccccacccagGAATTATATTTAGTAAAGGAAATGTGTGGAAAAACATAAGGCGCTTCTCACTTACAACTCTGCGGAACTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTTGAGGAACTTCCGGAAAACCAATGgtacgcgcgggtgtagactcagaacttggtgtgattttattcgtggctga Alignment from Pairagon GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTT-AGGAAAACCAATG aaaagattgcagagcccaactctgtctatgcctccattctccccacccagGAATTATATTTAGTAAAGGAAATGTGTGGAAAAACATAAGGCGCTTCTCACTTACAACTCTGCGGAACTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTTGAGGAACTTCCGGAAAACCAATGgtacgcgcgggtgtagactcagaacttggtgtgattttattcgtggctga Alignment from Exonerate_protein2genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTT-AGGAAAACCAATG aaaagattgcagagcccaactctgtctatgcctccattctccccacccagGAATTATATTTAGTAAAGGAAATGTGTGGAAAAACATAAGGCGCTTCTCACTTACAACTCTGCGGAACTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTTGAGGAACTTCCGGAAAACCAATGgtacgcgcgggtgtagactcagaacttggtgtgattttattcgtggctga Alignment from Exonerate_coding2genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTT-AGGAAAACCAATG aaaagattgcagagcccaactctgtctatgcctccattctccccacccagGAATTATATTTAGTAAAGGAAATGTGTGGAAAAACATAAGGCGCTTCTCACTTACAACTCTGCGGAACTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTTGAGGAACTTCCGGAAAACCAATGgtacgcgcgggtgtagactcagaacttggtgtgattttattcgtggctga Alignment from GeneWise GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAA-CTTAGGAAAACCAATG aaaagattgcagagcccaactctgtctatgcctccattctccccacccagGAATTATATTTAGTAAAGGAAATGTGTGGAAAAACATAAGGCGCTTCTCACTTACAACTCTGCGGAACTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGTCTTGTTGAGGAACTTCCGGAAAACCAATGgtacgcgcgggtgtagactcagaacttggtgtgattttattcgtggctga #### Cyp2c54_ID7855_3 --> 2 - 1 Original Alignment gcATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAA-GCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg ctgctgctactccaaggtttactctgtataacaaggtttcactaacacaggcATTGGATTTAGCAATGGAACTGTATGGAAAAACACGAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAACGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATggtaatttgcaggtttagaagaaaagtgaccagctaggtcttgcaaattct Alignment from CESAR gcATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAA-GCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg ctgctgctactccaaggtttactctgtataacaaggtttcactaacacaggcATTGGATTTAGCAATGGAACTGTATGGAAAAACACGAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAACGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATggtaatttgcaggtttagaagaaaagtgaccagctaggtcttgcaaattct Alignment from Spaln_aa2Genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAA-GCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggtttactctgtataacaaggtttcactaacacagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACGAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAAcGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtaatttgcaggtttagaagaaaagtgaccagctaggtcttgcaaattct Alignment from Spaln_nt2Genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAA-GCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggtttactctgtataacaaggtttcactaacacagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACGAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAACGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtaatttgcaggtttagaagaaaagtgaccagctaggtcttgcaaattct Alignment from Pairagon GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAA-GCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggtttactctgtataacaaggtttcactaacacagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACGAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAACGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtaatttgcaggtttagaagaaaagtgaccagctaggtcttgcaaattct Alignment from Exonerate_protein2genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAA-GCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggtttactctgtataacaaggtttcactaacacagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACGAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAACGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtaatttgcaggtttagaagaaaagtgaccagctaggtcttgcaaattct Alignment from Exonerate_coding2genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAA-GCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggtttactctgtataacaaggtttcactaacacagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACGAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAACGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtaatttgcaggtttagaagaaaagtgaccagctaggtcttgcaaattct Alignment from GeneWise GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAA-GCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggtttactctgtataacaaggtttcactaacacagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACGAGGCACTTCTCACTTATGACGCTGCGGAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTGTTCAAGAGGAACGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtaatttgcaggtttagaagaaaagtgaccagctaggtcttgcaaattct #### D19Ertd737e_ID13191_3 --> 2 - 2 Original Alignment gcAAATTGAAGAATGAA-AAGGAATCTCACag ttgaagtaacagcagcataattaagtgtccaggcgctctcttactttcaggcAAATTGAAGAATGAACAAGGAATCTCACaggtaaacatatgtaaaaatagtttctattcagcagtgttgtaggtcgattg Alignment from CESAR gcAAATTGAAGAATGAA-AAGGAATCTCACag ttgaagtaacagcagcataattaagtgtccaggcgctctcttactttcaggcAAATTGAAGAATGAACAAGGAATCTCACaggtaaacatatgtaaaaatagtttctattcagcagtgttgtaggtcgattg Alignment from Spaln_aa2Genome GCAAATTGAAGAATGAA-AAGGAATCTCACAG ttgaagtaacagcagcataattaagtgtccaggcgctctcttactttcagGCAAATTGAAGAATGAAcAAGGAATCTCACAGgtaaacatatgtaaaaatagtttctattcagcagtgttgtaggtcgattg Alignment from Spaln_nt2Genome GCAAATTGAAGAATGAA-AAGGAATCTCACAG ttgaagtaacagcagcataattaagtgtccaggcgctctcttactttcagGCAAATTGAAGAATGAACAAGGAATCTCACAGgtaaacatatgtaaaaatagtttctattcagcagtgttgtaggtcgattg Alignment from Pairagon GCAAATTGAAGAATGAA-AAGGAATCTCACAG ttgaagtaacagcagcataattaagtgtccaggcgctctcttactttcagGCAAATTGAAGAATGAACAAGGAATCTCACAGgtaaacatatgtaaaaatagtttctattcagcagtgttgtaggtcgattg Alignment from Exonerate_protein2genome GCAAATTGAAGAATGAA-AAGGAATCTCACAG ttgaagtaacagcagcataattaagtgtccaggcgctctcttactttcagGCAAATTGAAGAATGAACAAGGAATCTCACAGgtaaacatatgtaaaaatagtttctattcagcagtgttgtaggtcgattg Alignment from Exonerate_coding2genome ttgaagtaacagcagcataattaagtgtccaggcgctctcttactttcaggcaaattgaagaatgaacaaggaatctcacaggtaaacatatgtaaaaatagtttctattcagcagtgttgtaggtcgattg Alignment from GeneWise ttgaagtaacagcagcataattaagtgtccaggcgctctcttactttcaggcaaattgaagaatgaacaaggaatctcacaggtaaacatatgtaaaaatagtttctattcagcagtgttgtaggtcgattg #### D19Ertd737e_ID13192_2 --> 0 - 1 Original Alignment AAATTTCAAGAA-TTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAg tatcttgagttacactcacacacacacaatgattcttattcttgttatagAAATTTCAAGAACTTGCATAAAAAAAATTCTGAACAGAAAAATTCAACACCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAggtaacaattcttaaatctaaattagaatgttagctaggctgactcctaag Alignment from CESAR AAATTTCAAGAA-TTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAg tatcttgagttacactcacacacacacaatgattcttattcttgttatagAAATTTCAAGAACTTGCATAAAAAAAATTCTGAACAGAAAAATTCAACACCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAggtaacaattcttaaatctaaattagaatgttagctaggctgactcctaag Alignment from Spaln_aa2Genome -AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tatcttgagttacactcacacacacacaatgattcttattcttgttatagAAATTTCAAGAACTTGCATAAAAAAAATTCTGAACAGAAAAATTCAACACCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAGgtaacaattcttaaatctaaattagaatgttagctaggctgactcctaag Alignment from Spaln_nt2Genome AAATTTCAAGAA-TTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tatcttgagttacactcacacacacacaatgattcttattcttgttatagAAATTTCAAGAACTTGCATAAAAAAAATTCTGAACAGAAAAATTCAACACCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAGgtaacaattcttaaatctaaattagaatgttagctaggctgactcctaag Alignment from Pairagon AAATTTCAAGAA-TTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tatcttgagttacactcacacacacacaatgattcttattcttgttatagAAATTTCAAGAACTTGCATAAAAAAAATTCTGAACAGAAAAATTCAACACCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAGgtaacaattcttaaatctaaattagaatgttagctaggctgactcctaag Alignment from Exonerate_protein2genome AAATTTCAAGAA-TTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tatcttgagttacactcacacacacacaatgattcttattcttgttatagAAATTTCAAGAACTTGCATAAAAAAAATTCTGAACAGAAAAATTCAACACCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAGgtaacaattcttaaatctaaattagaatgttagctaggctgactcctaag Alignment from Exonerate_coding2genome AAATTTCAAGAA-TTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tatcttgagttacactcacacacacacaatgattcttattcttgttatagAAATTTCAAGAACTTGCATAAAAAAAATTCTGAACAGAAAAATTCAACACCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAGgtaacaattcttaaatctaaattagaatgttagctaggctgactcctaag Alignment from GeneWise -AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tatcttgagttacactcacacacacacaatgattcttattcttgttatagAAATTTCAAGAACTTGCATAAAAAAAATTCTGAACAGAAAAATTCAACACCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAGgtaacaattcttaaatctaaattagaatgttagctaggctgactcctaag #### Dagla_ID2759_11 --> 0 - 0 Original Alignment GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGG-TTGGGCCACAAG ttgtatgctctctttggactccctcttataaaagtttacatatattgcagGATGCCCTGACTGACCTGACAGGTGATGCTGAGCGCCTTCCTGTGGAGGGACACAGAGGCACCTGGCTTGGGCCACAAGgtgagcagctcaatgcactgaggttcccccaccttgtcctcatctctgac Alignment from CESAR GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGG-TTGGGCCACAAG ttgtatgctctctttggactccctcttataaaagtttacatatattgcagGATGCCCTGACTGACCTGACAGGTGATGCTGAGCGCCTTCCTGTGGAGGGACACAGAGGCACCTGGCTTGGGCCACAAGgtgagcagctcaatgcactgaggttcccccaccttgtcctcatctctgac Alignment from Spaln_aa2Genome GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAGGGC------------ ttgtatgctctctttggactccctcttataaaagtttacatatattgcagGATGCCCTGACTGACCTGACAGGTGATGCTGAGCGCCTTCCTGTGGAGGGACACAGAGGCACCTGGCTTGGGCCACAAGGTGAGCAGCTCAATgcactgaggttcccccaccttgtcctcatctctgac Alignment from Spaln_nt2Genome GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGG-TTGGGCCACAAG ttgtatgctctctttggactccctcttataaaagtttacatatattgcagGATGCCCTGACTGACCTGACAGGTGATGCTGAGCGCCTTCCTGTGGAGGGACACAGAGGCACCTGGCTTGGGCCACAAGgtgagcagctcaatgcactgaggttcccccaccttgtcctcatctctgac Alignment from Pairagon GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGG-TTGGGCCACAAG ttgtatgctctctttggactccctcttataaaagtttacatatattgcagGATGCCCTGACTGACCTGACAGGTGATGCTGAGCGCCTTCCTGTGGAGGGACACAGAGGCACCTGGCTTGGGCCACAAGgtgagcagctcaatgcactgaggttcccccaccttgtcctcatctctgac Alignment from Exonerate_protein2genome GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGG-TTGGGCCACAAG ttgtatgctctctttggactccctcttataaaagtttacatatattgcagGATGCCCTGACTGACCTGACAGGTGATGCTGAGCGCCTTCCTGTGGAGGGACACAGAGGCACCTGGCTTGGGCCACAAGgtgagcagctcaatgcactgaggttcccccaccttgtcctcatctctgac Alignment from Exonerate_coding2genome GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGG-TTGGGCCACAAG ttgtatgctctctttggactccctcttataaaagtttacatatattgcagGATGCCCTGACTGACCTGACAGGTGATGCTGAGCGCCTTCCTGTGGAGGGACACAGAGGCACCTGGCTTGGGCCACAAGgtgagcagctcaatgcactgaggttcccccaccttgtcctcatctctgac Alignment from GeneWise GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGC------------------------------------CACAAG ttgtatgctctctttggactccctcttataaaagtttacatatattgcagGATGCCCTGACTGACCTGACAGGTGATGCTGAGCGCCTTCCTGTGGAGGGACACAGAGGCACCTGGCTTGGGCCACAAGGTGAGCAGCTCAATGCACTGAGGTTCCCCCACCTTgtcctcatctctgac #### Dak_ID2898_15 --> 1 - 0 Original Alignment gTATGGAAAGGCTGCA-CCAGGAGACAGGACAATG acttggctcctgtgtctacacctaaagattgcttggctttctccctgtaggTATGGAAAGGCTGCACCCAGGAGACAGGACAATGgtaagttccccttccccctttgagcctccctaagtgtcagggcttggctt Alignment from CESAR gTATGGAAAGGCTGCA-CCAGGAGACAGGACAATG acttggctcctgtgtctacacctaaagattgcttggctttctccctgtaggTATGGAAAGGCTGCACCCAGGAGACAGGACAATGgtaagttccccttccccctttgagcctccctaagtgtcagggcttggctc Alignment from Spaln_aa2Genome GA------AAGGCTGCACCAGGAGACAGGACAATG acttggctcctgtgtctacacctaaagattgcttggctttctccctgtagGTATGGAAAGGCTGCACCCAGGAGACAGGACAATGgtaagttccccttccccctttgagcctccctaagtgtcagggcttggctt Alignment from Spaln_nt2Genome GTATGGAAAGGCTGCA-CCAGGAGACAGGACAATG acttggctcctgtgtctacacctaaagattgcttggctttctccctgtagGTATGGAAAGGCTGCACCCAGGAGACAGGACAATGgtaagttccccttccccctttgagcctccctaagtgtcagggcttggctt Alignment from Pairagon GTATGGAAAGGCTGCA-CCAGGAGACAGGACAATG acttggctcctgtgtctacacctaaagattgcttggctttctccctgtagGTATGGAAAGGCTGCACCCAGGAGACAGGACAATGgtaagttccccttccccctttgagcctccctaagtgtcagggcttggctt Alignment from Exonerate_protein2genome GTATGGAAAGGCTGCA-CCAGGAGACAGGACAATG acttggctcctgtgtctacacctaaagattgcttggctttctccctgtagGTATGGAAAGGCTGCACCCAGGAGACAGGACAATGgtaagttccccttccccctttgagcctccctaagtgtcagggcttggctt Alignment from Exonerate_coding2genome acttggctcctgtgtctacacctaaagattgcttggctttctccctgtaggtatggaaaggctgcacccaggagacaggacaatggtaagttccccttccccctttgagcctccctaagtgtcagggcttggctt Alignment from GeneWise acttggctcctgtgtctacacctaaagattgcttggctttctccctgtaggtatggaaaggctgcacccaggagacaggacaatggtaagttccccttccccctttgagcctccctaagtgtcagggcttggctt #### Dak_ID2899_14 --> 0 - 2 Original Alignment CTCTATGGCCTGTTCCTG-ACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGaa tgggtcccaaccagctcaatgcaatcaactggcctccggtctatccacagCTCTATGGCCTGTTCCTGCACTGCATCTGCACAGCCTCTCAAAGCCAAGACTGACCTGCCAACCTGGTCTGCTGCCATGGATGCCGGCCTAGAGTCCATGCAGaagtaagtcagctgcccacatcttaacagcaggagtgtactggggaggtgat Alignment from CESAR CTCTATGGCCTGTTCCTG-ACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGaa tgggtcccaaccagctcaatgcaatcaactggcctccggtctatccacagCTCTATGGCCTGTTCCTGCACTGCATCTGCACAGCCTCTCAAAGCCAAGACTGACCTGCCAACCTGGTCTGCTGCCATGGATGCCGGCCTAGAGTCCATGCAGaagtaagtcagctgcccacatcttaacagcaggagtgtactggggaggtgat Alignment from Spaln_aa2Genome CTCTATGGCCTGTTCCTG-ACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGAA tgggtcccaaccagctcaatgcaatcaactggcctccggtctatccacagCTCTATGGCCTGTTCCTGcACTGCATCTGCACAGCCTCTCAAAGCCAAGACTGACCTGCCAACCTGGTCTGCTGCCATGGATGCCGGCCTAGAGTCCATGCAGAAgtaagtcagctgcccacatcttaacagcaggagtgtactggggaggtgat Alignment from Spaln_nt2Genome CTCTATGGCCTGTTCCTG-ACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGAA tgggtcccaaccagctcaatgcaatcaactggcctccggtctatccacagCTCTATGGCCTGTTCCTGCACTGCATCTGCACAGCCTCTCAAAGCCAAGACTGACCTGCCAACCTGGTCTGCTGCCATGGATGCCGGCCTAGAGTCCATGCAGAAgtaagtcagctgcccacatcttaacagcaggagtgtactggggaggtgat Alignment from Pairagon CTCTATGGCCTGTTCCTG-ACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGAA tgggtcccaaccagctcaatgcaatcaactggcctccggtctatccacagCTCTATGGCCTGTTCCTGCACTGCATCTGCACAGCCTCTCAAAGCCAAGACTGACCTGCCAACCTGGTCTGCTGCCATGGATGCCGGCCTAGAGTCCATGCAGAAgtaagtcagctgcccacatcttaacagcaggagtgtactggggaggtgat Alignment from Exonerate_protein2genome CTCTATGGCCTGTTCCTG-ACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGAA tgggtcccaaccagctcaatgcaatcaactggcctccggtctatccacagCTCTATGGCCTGTTCCTGCACTGCATCTGCACAGCCTCTCAAAGCCAAGACTGACCTGCCAACCTGGTCTGCTGCCATGGATGCCGGCCTAGAGTCCATGCAGAAgtaagtcagctgcccacatcttaacagcaggagtgtactggggaggtgat Alignment from Exonerate_coding2genome CTCTATGGCCTGTTCCT-GACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGAA tgggtcccaaccagctcaatgcaatcaactggcctccggtctatccacagCTCTATGGCCTGTTCCTGCACTGCATCTGCACAGCCTCTCAAAGCCAAGACTGACCTGCCAACCTGGTCTGCTGCCATGGATGCCGGCCTAGAGTCCATGCAGAAgtaagtcagctgcccacatcttaacagcaggagtgtactggggaggtgat Alignment from GeneWise CTCTATGGCCTGTTC-CTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGAA tgggtcccaaccagctcaatgcaatcaactggcctccggtctatccacagCTCTATGGCCTGTTCCTGCACTGCATCTGCACAGCCTCTCAAAGCCAAGACTGACCTGCCAACCTGGTCTGCTGCCATGGATGCCGGCCTAGAGTCCATGCAGAAgtaagtcagctgcccacatcttaacagcaggagtgtactggggaggtgat #### Dak_ID2900_13 --> 2 - 0 Original Alignment ccATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTG-CTGGAGAGGATGGGAGGCTCATCTGGGGCG caaagtggcttgtagctcggatagtccactgattttttcttcctctttagccATTCAGGGGTGGCTGAAGGAAGGCCCATCTCTAACCAGCCCCGCCCAGGTACTCTCCAGATTGCCTGTCCTGCTGCCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtaaggaggagcagttcttaagggacaacttgatggggagggttgcaagc Alignment from CESAR ccATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTG-CTGGAGAGGATGGGAGGCTCATCTGGGGCG caaagtggcttgtagctcggatagtccactgattttttcttcctctttagccATTCAGGGGTGGCTGAAGGAAGGCCCATCTCTAACCAGCCCCGCCCAGGTACTCTCCAGATTGCCTGTCCTGCTGCCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtaaggaggagcagttcttaagggacaacttgatggggagggttgcaagc Alignment from Spaln_aa2Genome CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTG-CTGGAGAGGATGGGAGGCTCATCTGGGGCG caaagtggcttgtagctcggatagtccactgattttttcttcctctttagCCATTCAGGGGTGGCTGAAGGAAGGCCCATCTCTAACCAGCCCCGCCCAGGTACTCTCCAGATTGCCTGTCCTGCTGcCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtaaggaggagcagttcttaagggacaacttgatggggagggttgcaagc Alignment from Spaln_nt2Genome CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTG-CTGGAGAGGATGGGAGGCTCATCTGGGGCG caaagtggcttgtagctcggatagtccactgattttttcttcctctttagCCATTCAGGGGTGGCTGAAGGAAGGCCCATCTCTAACCAGCCCCGCCCAGGTACTCTCCAGATTGCCTGTCCTGCTGCCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtaaggaggagcagttcttaagggacaacttgatggggagggttgcaagc Alignment from Pairagon CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTG-CTGGAGAGGATGGGAGGCTCATCTGGGGCG caaagtggcttgtagctcggatagtccactgattttttcttcctctttagCCATTCAGGGGTGGCTGAAGGAAGGCCCATCTCTAACCAGCCCCGCCCAGGTACTCTCCAGATTGCCTGTCCTGCTGCCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtaaggaggagcagttcttaagggacaacttgatggggagggttgcaagc Alignment from Exonerate_protein2genome CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTG-CTGGAGAGGATGGGAGGCTCATCTGGGGCG caaagtggcttgtagctcggatagtccactgattttttcttcctctttagCCATTCAGGGGTGGCTGAAGGAAGGCCCATCTCTAACCAGCCCCGCCCAGGTACTCTCCAGATTGCCTGTCCTGCTGCCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtaaggaggagcagttcttaagggacaacttgatggggagggttgcaagc Alignment from Exonerate_coding2genome CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCT-GGAGAGGATGGGAGGCTCATCTGGGGCG caaagtggcttgtagctcggatagtccactgattttttcttcctctttagCCATTCAGGGGTGGCTGAAGGAAGGCCCATCTCTAACCAGCCCCGCCCAGGTACTCTCCAGATTGCCTGTCCTGCTGCCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtaaggaggagcagttcttaagggacaacttgatggggagggttgcaagc Alignment from GeneWise CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTG-CTGGAGAGGATGGGAGGCTCATCTGGGGCG caaagtggcttgtagctcggatagtccactgattttttcttcctctttagCCATTCAGGGGTGGCTGAAGGAAGGCCCATCTCTAACCAGCCCCGCCCAGGTACTCTCCAGATTGCCTGTCCTGCTGCCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtaaggaggagcagttcttaagggacaacttgatggggagggttgcaagc #### Dak_ID2901_12 --> 2 - 1 Original Alignment gtGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGAT-GGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAg cattggcactcatattttcagctgcttgtgaacatgacttctttttgcaggtGTAACATCAAAGCAGATGGCACTGGTGTTGGATCGGATATGCACCACCCTCATCGGAGTGGAGGAGCACCTGAATGCATTGGACAGGGCTGCTGGTGATCGGGGATTGTGGTTCTACCCATAGCCGTGCTGCTAAAggtaaatttccttggggcacatggcctttggccacatgggccaatttggtc Alignment from CESAR gtGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGAT-GGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAg cattggcactcatattttcagctgcttgtgaacatgacttctttttgcaggtGTAACATCAAAGCAGATGGCACTGGTGTTGGATCGGATATGCACCACCCTCATCGGAGTGGAGGAGCACCTGAATGCATTGGACAGGGCTGCTGGTGATCGGGGATTGTGGTTCTACCCATAGCCGTGCTGCTAAAggtaaatttccttggggcacatggcctttggccacatgggccaatttggtc Alignment from Spaln_aa2Genome GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGAT-GGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG cattggcactcatattttcagctgcttgtgaacatgacttctttttgcagGTGTAACATCAAAGCAGATGGCACTGGTGTTGGATCGGATATGCACCACCCTCATCGGAGTGGAGGAGCACCTGAATGCATTGGACAGGGCTGCTGGTGATcGGGGATTGTGGTTCTACCCATAGCCGTGCTGCTAAAGgtaaatttccttggggcacatggcctttggccacatgggccaatttggtc Alignment from Spaln_nt2Genome GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATG-GGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG cattggcactcatattttcagctgcttgtgaacatgacttctttttgcagGTGTAACATCAAAGCAGATGGCACTGGTGTTGGATCGGATATGCACCACCCTCATCGGAGTGGAGGAGCACCTGAATGCATTGGACAGGGCTGCTGGTGATCGGGGATTGTGGTTCTACCCATAGCCGTGCTGCTAAAGgtaaatttccttggggcacatggcctttggccacatgggccaatttggtc Alignment from Pairagon GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGAT-GGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG cattggcactcatattttcagctgcttgtgaacatgacttctttttgcagGTGTAACATCAAAGCAGATGGCACTGGTGTTGGATCGGATATGCACCACCCTCATCGGAGTGGAGGAGCACCTGAATGCATTGGACAGGGCTGCTGGTGATCGGGGATTGTGGTTCTACCCATAGCCGTGCTGCTAAAGgtaaatttccttggggcacatggcctttggccacatgggccaatttggtc Alignment from Exonerate_protein2genome GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGAT-GGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG cattggcactcatattttcagctgcttgtgaacatgacttctttttgcagGTGTAACATCAAAGCAGATGGCACTGGTGTTGGATCGGATATGCACCACCCTCATCGGAGTGGAGGAGCACCTGAATGCATTGGACAGGGCTGCTGGTGATCGGGGATTGTGGTTCTACCCATAGCCGTGCTGCTAAAGgtaaatttccttggggcacatggcctttggccacatgggccaatttggtc Alignment from Exonerate_coding2genome GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGA-TGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG cattggcactcatattttcagctgcttgtgaacatgacttctttttgcagGTGTAACATCAAAGCAGATGGCACTGGTGTTGGATCGGATATGCACCACCCTCATCGGAGTGGAGGAGCACCTGAATGCATTGGACAGGGCTGCTGGTGATCGGGGATTGTGGTTCTACCCATAGCCGTGCTGCTAAAGgtaaatttccttggggcacatggcctttggccacatgggccaatttggtc Alignment from GeneWise GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGAT-GGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG cattggcactcatattttcagctgcttgtgaacatgacttctttttgcagGTGTAACATCAAAGCAGATGGCACTGGTGTTGGATCGGATATGCACCACCCTCATCGGAGTGGAGGAGCACCTGAATGCATTGGACAGGGCTGCTGGTGATCGGGGATTGTGGTTCTACCCATAGCCGTGCTGCTAAAGgtaaatttccttggggcacatggcctttggccacatgggccaatttggtc #### Dak_ID2902_11 --> 2 - 1 Original Alignment atGCTGAAACTACTGCAAAAGCCTGG-CCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAg ggaagtctaggcctcaattgtgtttggaatggactcttcccttccctcagatGCTGAAACTACTGCAAAAGCCTGGCCCT---ATGGCCAAGGTCTCTGTGACTGGGAGGAAACAGATTAGGGCAGCTCCCACAGAGCCTCCAGAGGCCCCTGAAGCCACTGTAGCAGGAggtaggtggtcctactgagatctgtggcggttgaaactctaccttcactat Alignment from CESAR atGCTGAAACTACTGCAAAAGCCTGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAg ggaagtctaggcctcaattgtgtttggaatggactcttcccttccctcagatGCTGAAACTACTGCAAAAGCCTGGCCCT--ATGGCCAAGGTCTCTGTGACTGGGAGGAAACAGATTAGGGCAGCTCCCACAGAGCCTCCAGAGGCCCCTGAAGCCACTGTAGCAGGAggtaggtggtcctactgagatctgtggcggttgaaactctaccttcactat Alignment from Spaln_aa2Genome ATGCTGAAACTACTGCAAAAGCCTGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAG ggaagtctaggcctcaattgtgtttggaatggactcttcccttccctcagATGCTGAAACTACTGCAAAAGCCTGGCCCT--ATGGCCAAGGTCTCTGTGACTGGGAGGAAACAGATTAGGGCAGCTCCCACAGAGCCTCCAGAGGCCCCTGAAGCCACTGTAGCAGGAGgtaggtggtcctactgagatctgtggcggttgaaactctaccttcactat Alignment from Spaln_nt2Genome ATGCTGAAACTACTGCAAAAGCCTGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAG ggaagtctaggcctcaattgtgtttggaatggactcttcccttccctcagATGCTGAAACTACTGCAAAAGCCTGGC--CCTATGGCCAAGGTCTCTGTGACTGGGAGGAAACAGATTAGGGCAGCTCCCACAGAGCCTCCAGAGGCCCCTGAAGCCACTGTAGCAGGAGgtaggtggtcctactgagatctgtggcggttgaaactctaccttcactat Alignment from Pairagon ATGCTGAAACTACTGCAAAAGCCTGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAG ggaagtctaggcctcaattgtgtttggaatggactcttcccttccctcagATGCTGAAACTACTGCAAAAGCCTGGCCC--TATGGCCAAGGTCTCTGTGACTGGGAGGAAACAGATTAGGGCAGCTCCCACAGAGCCTCCAGAGGCCCCTGAAGCCACTGTAGCAGGAGgtaggtggtcctactgagatctgtggcggttgaaactctaccttcactat Alignment from Exonerate_protein2genome ATGCTGAAACTACTGCAAAAGCCTGG-CCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAG ggaagtctaggcctcaattgtgtttggaatggactcttcccttccctcagATGCTGAAACTACTGCAAAAGCCTGGCCCT---ATGGCCAAGGTCTCTGTGACTGGGAGGAAACAGATTAGGGCAGCTCCCACAGAGCCTCCAGAGGCCCCTGAAGCCACTGTAGCAGGAGgtaggtggtcctactgagatctgtggcggttgaaactctaccttcactat Alignment from Exonerate_coding2genome ATGCTGAAACTACTGCAAAAGCCTGGCC-TCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAG ggaagtctaggcctcaattgtgtttggaatggactcttcccttccctcagATGCTGAAACTACTGCAAAAGCCTGGCCC---TATGGCCAAGGTCTCTGTGACTGGGAGGAAACAGATTAGGGCAGCTCCCACAGAGCCTCCAGAGGCCCCTGAAGCCACTGTAGCAGGAGgtaggtggtcctactgagatctgtggcggttgaaactctaccttcactat Alignment from GeneWise ATGCTGAAACTACTGCAAAAGCCTGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAG ggaagtctaggcctcaattgtgtttggaatggactcttcccttccctcagATGCTGAAACTACTGCAAAAGCCTGGCCCT--ATGGCCAAGGTCTCTGTGACTGGGAGGAAACAGATTAGGGCAGCTCCCACAGAGCCTCCAGAGGCCCCTGAAGCCACTGTAGCAGGAGgtaggtggtcctactgagatctgtggcggttgaaactctaccttcactat #### Dak_ID2907_6 --> 2 - 1 Original Alignment gtACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCT-GATGAAATAGAGCTAGGCCTGg ctgccaccacccacaaaattaccatccctccttctctctttccataataggtACCCTAGGCGTGAGCTTGTCATCGTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTCGATGAAATAGAGTTAGGCCTGggtaagtccacagtcacgatgcccctgctgcgactgttttagggtgcctag Alignment from CESAR gtACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCT-GATGAAATAGAGCTAGGCCTGg ctgccaccacccacaaaattaccatccctccttctctctttccataataggtACCCTAGGCGTGAGCTTGTCATCGTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTCGATGAAATAGAGTTAGGCCTGggtaagtccacagtcacgatgcccctgctgcgactgttttagggtgcctag Alignment from Spaln_aa2Genome GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCT-GATGAAATAGAGCTAGGCCTGG ctgccaccacccacaaaattaccatccctccttctctctttccataatagGTACCCTAGGCGTGAGCTTGTCATCGTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTcGATGAAATAGAGTTAGGCCTGGgtaagtccacagtcacgatgcccctgctgcgactgttttagggtgcctag Alignment from Spaln_nt2Genome GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCT-GATGAAATAGAGCTAGGCCTGG ctgccaccacccacaaaattaccatccctccttctctctttccataatagGTACCCTAGGCGTGAGCTTGTCATCGTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTCGATGAAATAGAGTTAGGCCTGGgtaagtccacagtcacgatgcccctgctgcgactgttttagggtgcctag Alignment from Pairagon GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCT-GATGAAATAGAGCTAGGCCTGG ctgccaccacccacaaaattaccatccctccttctctctttccataatagGTACCCTAGGCGTGAGCTTGTCATCGTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTCGATGAAATAGAGTTAGGCCTGGgtaagtccacagtcacgatgcccctgctgcgactgttttagggtgcctag Alignment from Exonerate_protein2genome GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCT-GATGAAATAGAGCTAGGCCTGG ctgccaccacccacaaaattaccatccctccttctctctttccataatagGTACCCTAGGCGTGAGCTTGTCATCGTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTCGATGAAATAGAGTTAGGCCTGGgtaagtccacagtcacgatgcccctgctgcgactgttttagggtgcctag Alignment from Exonerate_coding2genome GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGC-TGATGAAATAGAGCTAGGCCTGG ctgccaccacccacaaaattaccatccctccttctctctttccataatagGTACCCTAGGCGTGAGCTTGTCATCGTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTCGATGAAATAGAGTTAGGCCTGGgtaagtccacagtcacgatgcccctgctgcgactgttttagggtgcctag Alignment from GeneWise GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCA-GCTGATGAAATAGAGCTAGGCCTGGGGAT ctgccaccacccacaaaattaccatccctccttctctctttccataatagGTACCCTAGGCGTGAGCTTGTCATCGTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTCGATGAAATAGAGTTAGGCCTGGGTAAgtccacagtcacgatgcccctgctgcgactgttttagggtgcctag #### Ddb1_ID2930_15 --> 2 - 1 Original Alignment agATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCAC-TACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAg agtacttcaggttaaagctccagtgaggtttgtccgtttttaatccccagagATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACCTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTCGGGCTCAATATCGAGACAggtaaggcaaaacattgagtgtgggttttttcagaaatagggagtcttgga Alignment from CESAR agATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCAC-TACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAg agtacttcaggttaaagctccagtgaggtttgtccgtttttaatccccagagATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACCTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTCGGGCTCAATATCGAGACAggtaaggcaaaacattgagtgtgggttttttcagaaatagggagtcttgga Alignment from Spaln_aa2Genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCAC-TACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG agtacttcaggttaaagctccagtgaggtttgtccgtttttaatccccagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACcTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTCGGGCTCAATATCGAGACAGgtaaggcaaaacattgagtgtgggttttttcagaaatagggagtcttgga Alignment from Spaln_nt2Genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCA-CTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG agtacttcaggttaaagctccagtgaggtttgtccgtttttaatccccagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACCTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTCGGGCTCAATATCGAGACAGgtaaggcaaaacattgagtgtgggttttttcagaaatagggagtcttgga Alignment from Pairagon AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCA-CTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG agtacttcaggttaaagctccagtgaggtttgtccgtttttaatccccagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACCTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTCGGGCTCAATATCGAGACAGgtaaggcaaaacattgagtgtgggttttttcagaaatagggagtcttgga Alignment from Exonerate_protein2genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCAC-TACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG agtacttcaggttaaagctccagtgaggtttgtccgtttttaatccccagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACCTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTCGGGCTCAATATCGAGACAGgtaaggcaaaacattgagtgtgggttttttcagaaatagggagtcttgga Alignment from Exonerate_coding2genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCAC-TACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG agtacttcaggttaaagctccagtgaggtttgtccgtttttaatccccagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACCTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTCGGGCTCAATATCGAGACAGgtaaggcaaaacattgagtgtgggttttttcagaaatagggagtcttgga Alignment from GeneWise AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCAC-TACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCTCAACATCGAGACAG agtacttcaggttaaagctccagtgaggtttgtccgtttttaatccccagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACCTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTCGGGCTCAATATCGAGACAGgtaaggcaaaacattgagtgtgggttttttcagaaatagggagtcttgga #### Ddb1_ID2931_16 --> 2 - 2 Original Alignment gtTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGG-CCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACag cagctcttgccctgttttctttccttcttctttgcctttttgtgggacaggtTTATTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACCGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCCACCGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACaggtatccctcctttctgtcttaagcaggagtcactaactggagactgctta Alignment from CESAR gtTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGG-CCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACag cagctcttgccctgttttctttccttcttctttgcctttttgtgggacaggtTTATTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACCGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCCACCGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACaggtatccctcctttctgtcttaagcaggagtcactaactggagactgctta Alignment from Spaln_aa2Genome GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCC-ACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG cagctcttgccctgttttctttccttcttctttgcctttttgtgggacagGTTTATTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACCGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCcACCGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtatccctcctttctgtcttaagcaggagtcactaactggagactgctta Alignment from Spaln_nt2Genome GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGG-CCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG cagctcttgccctgttttctttccttcttctttgcctttttgtgggacagGTTTATTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACCGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCCACCGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtatccctcctttctgtcttaagcaggagtcactaactggagactgctta Alignment from Pairagon GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGG-CCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG cagctcttgccctgttttctttccttcttctttgcctttttgtgggacagGTTTATTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACCGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCCACCGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtatccctcctttctgtcttaagcaggagtcactaactggagactgctta Alignment from Exonerate_protein2genome GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGG-CCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG cagctcttgccctgttttctttccttcttctttgcctttttgtgggacagGTTTATTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACCGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCCACCGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtatccctcctttctgtcttaagcaggagtcactaactggagactgctta Alignment from Exonerate_coding2genome GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGG-CCCACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG cagctcttgccctgttttctttccttcttctttgcctttttgtgggacagGTTTATTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACCGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCCACCGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtatccctcctttctgtcttaagcaggagtcactaactggagactgctta Alignment from GeneWise GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCC-ACTGTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG cagctcttgccctgttttctttccttcttctttgcctttttgtgggacagGTTTATTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACCGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCCACCGTGATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtatccctcctttctgtcttaagcaggagtcactaactggagactgctta #### Ddb1_ID2932_17 --> 1 - 2 Original Alignment tCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATC-CAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCag tatcctttattgttaacttactcaatacttttcttttgttttgaaattagtCTGGCATTGGCCAATAACAGCACTCTCACAATTGGTACCATTGATGAAATCCCAGAAGCTCCACATTCGCACAGTTCCCCTCTACGAGTCTCCCaggtgagtctagagctgagaagcagcagagggagttggttggtaatggctca Alignment from CESAR tCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATC-CAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCag tatcctttattgttaacttactcaatacttttcttttgttttgaaattagtCTGGCATTGGCCAATAACAGCACTCTCACAATTGGTACCATTGATGAAATCCCAGAAGCTCCACATTCGCACAGTTCCCCTCTACGAGTCTCCCaggtgagtctagagctgagaagcagcagagggagttggttggtaatggctca Alignment from Spaln_aa2Genome TCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATC-CAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tatcctttattgttaacttactcaatacttttcttttgttttgaaattagTCTGGCATTGGCCAATAACAGCACTCTCACAATTGGTACCATTGATGAAATCcCAGAAGCTCCACATTCGCACAGTTCCCCTCTACGAGTCTCCCAGgtgagtctagagctgagaagcagcagagggagttggttggtaatggctca Alignment from Spaln_nt2Genome TCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGAT-CCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tatcctttattgttaacttactcaatacttttcttttgttttgaaattagTCTGGCATTGGCCAATAACAGCACTCTCACAATTGGTACCATTGATGAAATCCCAGAAGCTCCACATTCGCACAGTTCCCCTCTACGAGTCTCCCAGgtgagtctagagctgagaagcagcagagggagttggttggtaatggctca Alignment from Pairagon TCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGAT-CCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tatcctttattgttaacttactcaatacttttcttttgttttgaaattagTCTGGCATTGGCCAATAACAGCACTCTCACAATTGGTACCATTGATGAAATCCCAGAAGCTCCACATTCGCACAGTTCCCCTCTACGAGTCTCCCAGgtgagtctagagctgagaagcagcagagggagttggttggtaatggctca Alignment from Exonerate_protein2genome TCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATC-CAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tatcctttattgttaacttactcaatacttttcttttgttttgaaattagTCTGGCATTGGCCAATAACAGCACTCTCACAATTGGTACCATTGATGAAATCCCAGAAGCTCCACATTCGCACAGTTCCCCTCTACGAGTCTCCCAGgtgagtctagagctgagaagcagcagagggagttggttggtaatggctca Alignment from Exonerate_coding2genome TCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATC-CAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tatcctttattgttaacttactcaatacttttcttttgttttgaaattagTCTGGCATTGGCCAATAACAGCACTCTCACAATTGGTACCATTGATGAAATCCCAGAAGCTCCACATTCGCACAGTTCCCCTCTACGAGTCTCCCAGgtgagtctagagctgagaagcagcagagggagttggttggtaatggctca Alignment from GeneWise TCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAG-ATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tatcctttattgttaacttactcaatacttttcttttgttttgaaattagTCTGGCATTGGCCAATAACAGCACTCTCACAATTGGTACCATTGATGAAATCCCAGAAGCTCCACATTCGCACAGTTCCCCTCTACGAGTCTCCCAGgtgagtctagagctgagaagcagcagagggagttggttggtaatggctca #### Ddb1_ID2935_20 --> 2 - 1 Original Alignment tgCTTCACGCCCATCAGTTTCTACAAAAC-GAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATg ttatgggttagagacaatatctgtaatccctcaacatttccatcctgcagtgCTTCATGCCCATCAGTTTCTTCAAAATCGAGTATGCCCTTAGCTTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCATATTGTGGTCTTCCAGTATTCAGATggtaagtgagcagtttctggactatgaaagatatgaatttcaggggaagca Alignment from CESAR tgCTTCACGCCCATCAGTTTCTACAAAAC-GAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATg ttatgggttagagacaatatctgtaatccctcaacatttccatcctgcagtgCTTCATGCCCATCAGTTTCTTCAAAATCGAGTATGCCCTTAGCTTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCATATTGTGGTCTTCCAGTATTCAGATggtaagtgagcagtttctggactatgaaagatatgaatttcaggggaagca Alignment from Spaln_aa2Genome TGCTTCACGCCCATCAGTTTCTACAAAAC-GAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG ttatgggttagagacaatatctgtaatccctcaacatttccatcctgcagTGCTTCATGCCCATCAGTTTCTTCAAAATcGAGTATGCCCTTAGCTTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCATATTGTGGTCTTCCAGTATTCAGATGgtaagtgagcagtttctggactatgaaagatatgaatttcaggggaagca Alignment from Spaln_nt2Genome TGCTTCACGCCCATCAGTTTCTACAAAA-CGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG ttatgggttagagacaatatctgtaatccctcaacatttccatcctgcagTGCTTCATGCCCATCAGTTTCTTCAAAATCGAGTATGCCCTTAGCTTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCATATTGTGGTCTTCCAGTATTCAGATGgtaagtgagcagtttctggactatgaaagatatgaatttcaggggaagca Alignment from Pairagon TGCTTCACGCCCATCAGTTTCTACAAAA-CGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG ttatgggttagagacaatatctgtaatccctcaacatttccatcctgcagTGCTTCATGCCCATCAGTTTCTTCAAAATCGAGTATGCCCTTAGCTTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCATATTGTGGTCTTCCAGTATTCAGATGgtaagtgagcagtttctggactatgaaagatatgaatttcaggggaagca Alignment from Exonerate_protein2genome TGCTTCACGCCCATCAGTTTCTACAAAAC-GAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG ttatgggttagagacaatatctgtaatccctcaacatttccatcctgcagTGCTTCATGCCCATCAGTTTCTTCAAAATCGAGTATGCCCTTAGCTTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCATATTGTGGTCTTCCAGTATTCAGATGgtaagtgagcagtttctggactatgaaagatatgaatttcaggggaagca Alignment from Exonerate_coding2genome TGCTTCACGCCCATCAGTTTCTACAAAAC-GAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG ttatgggttagagacaatatctgtaatccctcaacatttccatcctgcagTGCTTCATGCCCATCAGTTTCTTCAAAATCGAGTATGCCCTTAGCTTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCATATTGTGGTCTTCCAGTATTCAGATGgtaagtgagcagtttctggactatgaaagatatgaatttcaggggaagca Alignment from GeneWise TGCTTCACGCCCATCAGTTTCTACAAAAC-GAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG ttatgggttagagacaatatctgtaatccctcaacatttccatcctgcagTGCTTCATGCCCATCAGTTTCTTCAAAATCGAGTATGCCCTTAGCTTGGTCTCCTGCAAGTTGGGTAAAGACCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCATATTGTGGTCTTCCAGTATTCAGATGgtaagtgagcagtttctggactatgaaagatatgaatttcaggggaagca #### Ddb1_ID2938_23 --> 0 - 2 Original Alignment ATTGCCCGAGACTTTAATCCCAACTGGATGAGTGCA-GTGGAGATCTTGGATGATGACAATTTTCTGGGAGCTGAAAATGCCTTTAACTTGTTTGTGTGTCAGAAGGACag caaactcgcttccatgctgcagactacaattacttgatttcttggaacagATTGCCCGAGACTTTAATCCCAACTGGATGAGTGCACGTGGAGATCTTGGATGATGACAATTTTCTTGGAGCTGAAAATGCCTTTAACTTGTTTGTGTGTCAGAAGGACaggtgagtagttagtatagctctaaaattagcgcaagacctctaggtctaca Alignment from CESAR ATTGCCCGAGACTTTAATCCCAACTGGATGAGTGCA-GTGGAGATCTTGGATGATGACAATTTTCTGGGAGCTGAAAATGCCTTTAACTTGTTTGTGTGTCAGAAGGACag caaactcgcttccatgctgcagactacaattacttgatttcttggaacagATTGCCCGAGACTTTAATCCCAACTGGATGAGTGCACGTGGAGATCTTGGATGATGACAATTTTCTTGGAGCTGAAAATGCCTTTAACTTGTTTGTGTGTCAGAAGGACaggtgagtagttagtatagctctaaaattagcgcaagacctctaggtctaca Alignment from Spaln_aa2Genome ATTGCCCGAGACTTTAATCCCAACTGGATGAGTGCA-GTGGAGATCTTGGATGATGACAATTTTCTGGGAGCTGAAAATGCCTTTAACTTGTTTGTGTGTCAGAAGGACAG caaactcgcttccatgctgcagactacaattacttgatttcttggaacagATTGCCCGAGACTTTAATCCCAACTGGATGAGTGCAcGTGGAGATCTTGGATGATGACAATTTTCTTGGAGCTGAAAATGCCTTTAACTTGTTTGTGTGTCAGAAGGACAGgtgagtagttagtatagctctaaaattagcgcaagacctctaggtctaca Alignment from Spaln_nt2Genome ATTGCCCGAGACTTTAATCCCAACTGGATGAGTGCA-GTGGAGATCTTGGATGATGACAATTTTCTGGGAGCTGAAAATGCCTTTAACTTGTTTGTGTGTCAGAAGGACAG caaactcgcttccatgctgcagactacaattacttgatttcttggaacagATTGCCCGAGACTTTAATCCCAACTGGATGAGTGCACGTGGAGATCTTGGATGATGACAATTTTCTTGGAGCTGAAAATGCCTTTAACTTGTTTGTGTGTCAGAAGGACAGgtgagtagttagtatagctctaaaattagcgcaagacctctaggtctaca Alignment from Pairagon ATTGCCCGAGACTTTAATCCCAACTGGATGAGTGCA-GTGGAGATCTTGGATGATGACAATTTTCTGGGAGCTGAAAATGCCTTTAACTTGTTTGTGTGTCAGAAGGACAG caaactcgcttccatgctgcagactacaattacttgatttcttggaacagATTGCCCGAGACTTTAATCCCAACTGGATGAGTGCACGTGGAGATCTTGGATGATGACAATTTTCTTGGAGCTGAAAATGCCTTTAACTTGTTTGTGTGTCAGAAGGACAGgtgagtagttagtatagctctaaaattagcgcaagacctctaggtctaca Alignment from Exonerate_protein2genome ATTGCCCGAGACTTTAATCCCAACTGGATGAGTGCA-GTGGAGATCTTGGATGATGACAATTTTCTGGGAGCTGAAAATGCCTTTAACTTGTTTGTGTGTCAGAAGGACAG caaactcgcttccatgctgcagactacaattacttgatttcttggaacagATTGCCCGAGACTTTAATCCCAACTGGATGAGTGCACGTGGAGATCTTGGATGATGACAATTTTCTTGGAGCTGAAAATGCCTTTAACTTGTTTGTGTGTCAGAAGGACAGgtgagtagttagtatagctctaaaattagcgcaagacctctaggtctaca Alignment from Exonerate_coding2genome ATTGCCCGAGACTTTAATCCCAACTGGATGAGTGCA-GTGGAGATCTTGGATGATGACAATTTTCTGGGAGCTGAAAATGCCTTTAACTTGTTTGTGTGTCAGAAGGACAG caaactcgcttccatgctgcagactacaattacttgatttcttggaacagATTGCCCGAGACTTTAATCCCAACTGGATGAGTGCACGTGGAGATCTTGGATGATGACAATTTTCTTGGAGCTGAAAATGCCTTTAACTTGTTTGTGTGTCAGAAGGACAGgtgagtagttagtatagctctaaaattagcgcaagacctctaggtctaca Alignment from GeneWise ATTGCCCGAGACTTTAATCCCAACTGGATGAGT-GCAGTGGAGATCTTGGATGATGACAATTTTCTGGGAGCTGAAAATGCCTTTAACTTGTTTGTGTGTCAGAAGGACAG caaactcgcttccatgctgcagactacaattacttgatttcttggaacagATTGCCCGAGACTTTAATCCCAACTGGATGAGTGCACGTGGAGATCTTGGATGATGACAATTTTCTTGGAGCTGAAAATGCCTTTAACTTGTTTGTGTGTCAGAAGGACAGgtgagtagttagtatagctctaaaattagcgcaagacctctaggtctaca #### Ddb1_ID2940_25 --> 2 - 2 Original Alignment ggCTGGTGACCTCGCTGTCAGAGAGCTGGTATAACCTCCTGTTGGACATGCAGAACCGACTCAATAAGGTCATCAAAAGCGTG-GGCAAGATTGAGCACTCCtt tgtaaccttttgaagtgctccagaagctcctgtctgttaatctctgttagggCTGGTGACCTCGCTATCCAAGAGCTGGTACAACCTCCTGTTGGACATGCAGAACCGGCTCAATAAGGTAATCAAGAGTGTGCGGCAAGATTGAGCACTCCttgtgagttttcttttcagcagagtattgtctgttgggaagctctttccagc Alignment from CESAR ggCTGGTGACCTCGCTGTCAGAGAGCTGGTATAACCTCCTGTTGGACATGCAGAACCGACTCAATAAGGTCATCAAAAGCGTG-GGCAAGATTGAGCACTCCtt tgtaaccttttgaagtgctccagaagctcctgtctgttaatctctgttagggCTGGTGACCTCGCTATCCAAGAGCTGGTACAACCTCCTGTTGGACATGCAGAACCGGCTCAATAAGGTAATCAAGAGTGTGCGGCAAGATTGAGCACTCCttgtgagttttcttttcagcagagtattgtctgttgggaagctctttccagc Alignment from Spaln_aa2Genome GGCTGGTGACCTCGCTGTCAGAGAGCTGGTATAACCTCCTGTTGGACATGCAGAACCGACTCAATAAGGTCATCAAAAGCGTG-GGCAAGATTGAGCACTCCTT tgtaaccttttgaagtgctccagaagctcctgtctgttaatctctgttagGGCTGGTGACCTCGCTATCCAAGAGCTGGTACAACCTCCTGTTGGACATGCAGAACCGGCTCAATAAGGTAATCAAGAGTGTGcGGCAAGATTGAGCACTCCTTgtgagttttcttttcagcagagtattgtctgttgggaagctctttccagc Alignment from Spaln_nt2Genome GGCTGGTGACCTCGCTGTCAGAGAGCTGGTATAACCTCCTGTTGGACATGCAGAACCGACTCAATAAGGTCATCAAAAGCGTG-GGCAAGATTGAGCACTCCTT tgtaaccttttgaagtgctccagaagctcctgtctgttaatctctgttagGGCTGGTGACCTCGCTATCCAAGAGCTGGTACAACCTCCTGTTGGACATGCAGAACCGGCTCAATAAGGTAATCAAGAGTGTGCGGCAAGATTGAGCACTCCTTgtgagttttcttttcagcagagtattgtctgttgggaagctctttccagc Alignment from Pairagon GGCTGGTGACCTCGCTGTCAGAGAGCTGGTATAACCTCCTGTTGGACATGCAGAACCGACTCAATAAGGTCATCAAAAGCGTG-GGCAAGATTGAGCACTCCTT tgtaaccttttgaagtgctccagaagctcctgtctgttaatctctgttagGGCTGGTGACCTCGCTATCCAAGAGCTGGTACAACCTCCTGTTGGACATGCAGAACCGGCTCAATAAGGTAATCAAGAGTGTGCGGCAAGATTGAGCACTCCTTgtgagttttcttttcagcagagtattgtctgttgggaagctctttccagc Alignment from Exonerate_protein2genome GGCTGGTGACCTCGCTGTCAGAGAGCTGGTATAACCTCCTGTTGGACATGCAGAACCGACTCAATAAGGTCATCAAAAGCGTG-GGCAAGATTGAGCACTCCTT tgtaaccttttgaagtgctccagaagctcctgtctgttaatctctgttagGGCTGGTGACCTCGCTATCCAAGAGCTGGTACAACCTCCTGTTGGACATGCAGAACCGGCTCAATAAGGTAATCAAGAGTGTGCGGCAAGATTGAGCACTCCTTgtgagttttcttttcagcagagtattgtctgttgggaagctctttccagc Alignment from Exonerate_coding2genome GGCTGGTGACCTCGCTGTCAGAGAGCTGGTATAACCTCCTGTTGGACATGCAGAACCGACTCAATAAGGTCATCAAAAGCGTG-GGCAAGATTGAGCACTCCTT tgtaaccttttgaagtgctccagaagctcctgtctgttaatctctgttagGGCTGGTGACCTCGCTATCCAAGAGCTGGTACAACCTCCTGTTGGACATGCAGAACCGGCTCAATAAGGTAATCAAGAGTGTGCGGCAAGATTGAGCACTCCTTgtgagttttcttttcagcagagtattgtctgttgggaagctctttccagc Alignment from GeneWise GGCTGGTGACCTCGCTGTCAGAGAGCTGGTATAACCTCCTGTTGGACATGCAGAACCGACTCAATAAGGTCATCAAAAGC-GTGGGCAAGATTGAGCACTCCTT tgtaaccttttgaagtgctccagaagctcctgtctgttaatctctgttagGGCTGGTGACCTCGCTATCCAAGAGCTGGTACAACCTCCTGTTGGACATGCAGAACCGGCTCAATAAGGTAATCAAGAGTGTGCGGCAAGATTGAGCACTCCTTgtgagttttcttttcagcagagtattgtctgttgggaagctctttccagc #### Dpf2_ID1304_9 --> 2 - 0 Original Alignment ggCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTAC-CGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT cactccccactctggtttccaaccacttctttgtttttctctctgctcagggCATCCATCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCTGTGAAGACCTACCCGCTGGCAGTGTATCGAATGCAAGTGTTGCAACCTCTGTGGCACATCAGAAAATGATgtaatggtcactgagcctgccaggctcccaatgagcctgccaggctccat Alignment from CESAR ggCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTAC-CGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT cactccccactctggtttccaaccacttctttgtttttctctctgctcagggCATCCATCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCTGTGAAGACCTACCCGCTGGCAGTGTATCGAATGCAAGTGTTGCAACCTCTGTGGCACATCAGAAAATGATgtaatggtcactgagcctgccaggctcccaatgagcctgccaggctccat Alignment from Spaln_aa2Genome GGCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTAC-CGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT cactccccactctggtttccaaccacttctttgtttttctctctgctcagGGCATCCATCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCTGTGAAGACCTACcCGCTGGCAGTGTATCGAATGCAAGTGTTGCAACCTCTGTGGCACATCAGAAAATGATgtaatggtcactgagcctgccaggctcccaatgagcctgccaggctccat Alignment from Spaln_nt2Genome GGCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTAC-CGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT cactccccactctggtttccaaccacttctttgtttttctctctgctcagGGCATCCATCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCTGTGAAGACCTACCCGCTGGCAGTGTATCGAATGCAAGTGTTGCAACCTCTGTGGCACATCAGAAAATGATgtaatggtcactgagcctgccaggctcccaatgagcctgccaggctccat Alignment from Pairagon GGCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTA-CCGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT cactccccactctggtttccaaccacttctttgtttttctctctgctcagGGCATCCATCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCTGTGAAGACCTACCCGCTGGCAGTGTATCGAATGCAAGTGTTGCAACCTCTGTGGCACATCAGAAAATGATgtaatggtcactgagcctgccaggctcccaatgagcctgccaggctccat Alignment from Exonerate_protein2genome GGCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTAC-CGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT cactccccactctggtttccaaccacttctttgtttttctctctgctcagGGCATCCATCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCTGTGAAGACCTACCCGCTGGCAGTGTATCGAATGCAAGTGTTGCAACCTCTGTGGCACATCAGAAAATGATgtaatggtcactgagcctgccaggctcccaatgagcctgccaggctccat Alignment from Exonerate_coding2genome GGCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTAC-CGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT cactccccactctggtttccaaccacttctttgtttttctctctgctcagGGCATCCATCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCTGTGAAGACCTACCCGCTGGCAGTGTATCGAATGCAAGTGTTGCAACCTCTGTGGCACATCAGAAAATGATgtaatggtcactgagcctgccaggctcccaatgagcctgccaggctccat Alignment from GeneWise GGCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTAC-CGCTGGCAGTGCATCGAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT cactccccactctggtttccaaccacttctttgtttttctctctgctcagGGCATCCATCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCTGTGAAGACCTACCCGCTGGCAGTGTATCGAATGCAAGTGTTGCAACCTCTGTGGCACATCAGAAAATGATgtaatggtcactgagcctgccaggctcccaatgagcctgccaggctccat #### Dpf2_ID1305_8 --> 2 - 1 Original Alignment ccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAG-CCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAg aaagaaaaacattctgatgattctcaaattttgtgtgctttctcttcaagccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCCGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAggtgagtccattctcaaggagcagactgtactccatgtccagaaaccccct Alignment from CESAR ccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAG-CCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAg aaagaaaaacattctgatgattctcaaattttgtgtgctttctcttcaagccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCCGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAggtgagtccattctcaaggagcagactgtactccatgtccagaaaccccct Alignment from Spaln_aa2Genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAG-CCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG aaagaaaaacattctgatgattctcaaattttgtgtgctttctcttcaagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGcCCCGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtgagtccattctcaaggagcagactgtactccatgtccagaaaccccct Alignment from Spaln_nt2Genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAG-CCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG aaagaaaaacattctgatgattctcaaattttgtgtgctttctcttcaagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCCGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtgagtccattctcaaggagcagactgtactccatgtccagaaaccccct Alignment from Pairagon CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAG-CCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG aaagaaaaacattctgatgattctcaaattttgtgtgctttctcttcaagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCCGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtgagtccattctcaaggagcagactgtactccatgtccagaaaccccct Alignment from Exonerate_protein2genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAG-CCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG aaagaaaaacattctgatgattctcaaattttgtgtgctttctcttcaagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCCGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtgagtccattctcaaggagcagactgtactccatgtccagaaaccccct Alignment from Exonerate_coding2genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAG-CCCGAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG aaagaaaaacattctgatgattctcaaattttgtgtgctttctcttcaagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCCGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtgagtccattctcaaggagcagactgtactccatgtccagaaaccccct Alignment from GeneWise CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCC-GAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG aaagaaaaacattctgatgattctcaaattttgtgtgctttctcttcaagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCCGAGGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtgagtccattctcaaggagcagactgtactccatgtccagaaaccccct #### Dpf2_ID1309_5 --> 0 - 0 Original Alignment CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGG-GGGAAGGGGAAGTCCAAG AGTAAGGGTGTGAG ccttgggatgtgtttgagcttcacttgtttgtttgtttgtttaatgacagCGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACACCAAAGCGTCGGCGGGAAGGGCAAGTCCAAGgtaagtacatcatctgacctattcctactactctagAGTAAGGGTGTGAG Alignment from CESAR CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGG-GGGAAGGGGAAGTCCAAG AGTAAGGGTGTGAG ccttgggatgtgtttgagcttcacttgtttgtttgtttgtttaatgacagCGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACACCAAAGCGTCGGCGGGAAGGGCAAGTCCAAGgtaagtacatcatccaatctcatcctcatgtcttagAGTAAGGGTGTGAG Alignment from Spaln_aa2Genome CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGG-GGGAAGGGGAAGTCCAAG AGTAAGGGTGTGAG ccttgggatgtgtttgagcttcacttgtttgtttgtttgtttaatgacagCGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACACCAAAGCGTCGGcGGGAAGGGCAAGTCCAAGgtaagtacatcatctgacctattcctactactctagAGTAAGGGTGTGAG Alignment from Spaln_nt2Genome CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGG-GGGAAGGGGAAGTCCAAG AGTAAGGGTGTGAG ccttgggatgtgtttgagcttcacttgtttgtttgtttgtttaatgacagCGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACACCAAAGCGTCGGCGGGAAGGGCAAGTCCAAGgtaagtacatcatctgacctattcctactactctagAGTAAGGGTGTGAG Alignment from Pairagon CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGG-GGGAAGGGGAAGTCCAAG AGTAAGGGTGTGAG ccttgggatgtgtttgagcttcacttgtttgtttgtttgtttaatgacagCGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACACCAAAGCGTCGGCGGGAAGGGCAAGTCCAAGgtaagtacatcatctgacctattcctactactctagAGTAAGGGTGTGAG Alignment from Exonerate_protein2genome CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGG-GGGAAGGGGAAGTCCAAG AGTAAGGGTGTGAG ccttgggatgtgtttgagcttcacttgtttgtttgtttgtttaatgacagCGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACACCAAAGCGTCGGCGGGAAGGGCAAGTCCAAGgtaagtacatcatctgacctattcctactactctagAGTAAGGGTGTGAG Alignment from Exonerate_coding2genome CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGG-GGGAAGGGGAAGTCCAAG AGTAAGGGTGTGAG ccttgggatgtgtttgagcttcacttgtttgtttgtttgtttaatgacagCGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACACCAAAGCGTCGGCGGGAAGGGCAAGTCCAAGgtaagtacatcatctgacctattcctactactctagAGTAAGGGTGTGAG Alignment from GeneWise CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAGTCCAAGAGT-- -AAGGGTGTGAG ccttgggatgtgtttgagcttcacttgtttgtttgtttgtttaatgacagCGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACACCAAAGCGTCGGCGGGAAGGGCAAGTCCAAGGTAAgtacatcatctgacctattcctactactctagagTAAGGGTGTGAG #### Dpp3_ID739_14 --> 1 - 0 Original Alignment gATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAGGCA-GCCAACTGGCGACAG acactaaactgtccagattctgaaggtagctctctctattctctttccaggATCTTCGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTATGTGAACTGGCTCAATATGGTTCAGGCGGGCTTGTTGGCTTTGGAGTTCCACACCCCAAAGGCACGCCAACTGGCAGCAGgtgagagatggaacaggtgcatccctcaaggccagacaagcttaaactat Alignment from CESAR gATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAGGCA-GCCAACTGGCGACAG acactaaactgtccagattctgaaggtagctctctctattctctttccaggATCTTCGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTATGTGAACTGGCTCAATATGGTTCAGGCGGGCTTGTTGGCTTTGGAGTTCCACACCCCAAAGGCACGCCAACTGGCAGCAGgtgagagatggaacaggtgcatccctcaaggccagacaagcttaaactat Alignment from Spaln_aa2Genome GATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAGGCA-GCCAACTGGCGACAG acactaaactgtccagattctgaaggtagctctctctattctctttccagGATCTTCGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTATGTGAACTGGCTCAATATGGTTCAGGCGGGCTTGTTGGCTTTGGAGTTCCACACCCCAAAGGCAcGCCAACTGGCAGCAGgtgagagatggaacaggtgcatccctcaaggccagacaagcttaaactat Alignment from Spaln_nt2Genome GATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAGGCA-GCCAACTGGCGACAG acactaaactgtccagattctgaaggtagctctctctattctctttccagGATCTTCGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTATGTGAACTGGCTCAATATGGTTCAGGCGGGCTTGTTGGCTTTGGAGTTCCACACCCCAAAGGCACGCCAACTGGCAGCAGgtgagagatggaacaggtgcatccctcaaggccagacaagcttaaactat Alignment from Pairagon GATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAGGCA-GCCAACTGGCGACAG acactaaactgtccagattctgaaggtagctctctctattctctttccagGATCTTCGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTATGTGAACTGGCTCAATATGGTTCAGGCGGGCTTGTTGGCTTTGGAGTTCCACACCCCAAAGGCACGCCAACTGGCAGCAGgtgagagatggaacaggtgcatccctcaaggccagacaagcttaaactat Alignment from Exonerate_protein2genome GATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAGGCA-GCCAACTGGCGACAG acactaaactgtccagattctgaaggtagctctctctattctctttccagGATCTTCGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTATGTGAACTGGCTCAATATGGTTCAGGCGGGCTTGTTGGCTTTGGAGTTCCACACCCCAAAGGCACGCCAACTGGCAGCAGgtgagagatggaacaggtgcatccctcaaggccagacaagcttaaactat Alignment from Exonerate_coding2genome GATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAGGCA-GCCAACTGGCGACAG acactaaactgtccagattctgaaggtagctctctctattctctttccagGATCTTCGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTATGTGAACTGGCTCAATATGGTTCAGGCGGGCTTGTTGGCTTTGGAGTTCCACACCCCAAAGGCACGCCAACTGGCAGCAGgtgagagatggaacaggtgcatccctcaaggccagacaagcttaaactat Alignment from GeneWise -------------GTGCTGGAGATCTTTGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTACGTGAACTGGCTCAACATGGTTCGGGCTGGCTTGTTGGCTTTGGAGTTCTACACCCCAGAGGCA-GCCAACTGGCGACAG acactaaactgtccagattctgaaggtagCTCTCTCTATTCTCTTTCCAGGATCTTCGGCTTTGAGGGAGCTGATGCAGAAGATGTAATCTATGTGAACTGGCTCAATATGGTTCAGGCGGGCTTGTTGGCTTTGGAGTTCCACACCCCAAAGGCACGCCAACTGGCAGCAGgtgagagatggaacaggtgcatccctcaaggccagacaagcttaaactat #### Dpp3_ID740_13 --> 0 - 2 Original Alignment ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGC-CTCTACCTCTGTCTCAACCCCCAAGTGCTGga tgggggacacagccaagccctgattctttcttctctccttccctgcgtagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATAGCGAATTCAGCACCATTGCCTCCAGGTATGAAGAGTGTCGGGCTGAGAGTGTGGGCCCTCTACCTCTGTCTCAACCCCCAAGTGTTGgagtaatgaaccattggccagagggacggtgggctgaggccccacactaaac Alignment from CESAR ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGC-CTCTACCTCTGTCTCAACCCCCAAGTGCTGga tgggggacacagccaagccctgattctttcttctctccttccctgcgtagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATAGCGAATTCAGCACCATTGCCTCCAGGTATGAAGAGTGTCGGGCTGAGAGTGTGGGCCCTCTACCTCTGTCTCAACCCCCAAGTGTTGgagtaatgaaccattggccagagggacggtgggctgaggccccacactaaac Alignment from Spaln_aa2Genome ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGC-CTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tgggggacacagccaagccctgattctttcttctctccttccctgcgtagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATAGCGAATTCAGCACCATTGCCTCCAGGTATGAAGAGTGTCGGGCTGAGAGTGTGGGCcCTCTACCTCTGTCTCAACCCCCAAGTGTTGGAgtaatgaaccattggccagagggacggtgggctgaggccccacactaaac Alignment from Spaln_nt2Genome ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGT-GGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tgggggacacagccaagccctgattctttcttctctccttccctgcgtagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATAGCGAATTCAGCACCATTGCCTCCAGGTATGAAGAGTGTCGGGCTGAGAGTGTGGGCCCTCTACCTCTGTCTCAACCCCCAAGTGTTGGAgtaatgaaccattggccagagggacggtgggctgaggccccacactaaac Alignment from Pairagon ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGG-CCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tgggggacacagccaagccctgattctttcttctctccttccctgcgtagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATAGCGAATTCAGCACCATTGCCTCCAGGTATGAAGAGTGTCGGGCTGAGAGTGTGGGCCCTCTACCTCTGTCTCAACCCCCAAGTGTTGGAgtaatgaaccattggccagagggacggtgggctgaggccccacactaaac Alignment from Exonerate_protein2genome ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGC-CTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tgggggacacagccaagccctgattctttcttctctccttccctgcgtagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATAGCGAATTCAGCACCATTGCCTCCAGGTATGAAGAGTGTCGGGCTGAGAGTGTGGGCCCTCTACCTCTGTCTCAACCCCCAAGTGTTGGAgtaatgaaccattggccagagggacggtgggctgaggccccacactaaac Alignment from Exonerate_coding2genome ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGC-CTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tgggggacacagccaagccctgattctttcttctctccttccctgcgtagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATAGCGAATTCAGCACCATTGCCTCCAGGTATGAAGAGTGTCGGGCTGAGAGTGTGGGCCCTCTACCTCTGTCTCAACCCCCAAGTGTTGGAgtaatgaaccattggccagagggacggtgggctgaggccccacactaaac Alignment from GeneWise ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGC-CTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tgggggacacagccaagccctgattctttcttctctccttccctgcgtagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATAGCGAATTCAGCACCATTGCCTCCAGGTATGAAGAGTGTCGGGCTGAGAGTGTGGGCCCTCTACCTCTGTCTCAACCCCCAAGTGTTGGAgtaatgaaccattggccagagggacggtgggctgaggccccacactaaac #### Dpp3_ID741_12 --> 0 - 0 Original Alignment GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAG-ACTGGGGAACAG agcagtagttggccccgctgagcactgagtttttctttgttgtgtttcagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGGTGATCAACCCAGAGCACTGGGGAGCAGgtgaggaagccactatggggtgaggcaggtggaatgggggacacagccaa Alignment from CESAR GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAG-ACTGGGGAACAG agcagtagttggccccgctgagcactgagtttttctttgttgtgtttcagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGGTGATCAACCCAGAGCACTGGGGAGCAGgtgaggaagccactatggggtgaggcaggtggaatgggggacacagccaa Alignment from Spaln_aa2Genome GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAG---------ACTGGGGAACAG agcagtagttggccccgctgagcactgagtttttctttgttgtgtttcagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGGTGATCAACCCAGAGCACTGGGGAGCAGGTGAGGAAgccactatggggtgaggcaggtggaatgggggacacagccaa Alignment from Spaln_nt2Genome GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAG-ACTGGGGAACAG agcagtagttggccccgctgagcactgagtttttctttgttgtgtttcagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGGTGATCAACCCAGAGCACTGGGGAGCAGgtgaggaagccactatggggtgaggcaggtggaatgggggacacagccaa Alignment from Pairagon GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAG-ACTGGGGAACAG agcagtagttggccccgctgagcactgagtttttctttgttgtgtttcagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGGTGATCAACCCAGAGCACTGGGGAGCAGgtgaggaagccactatggggtgaggcaggtggaatgggggacacagccaa Alignment from Exonerate_protein2genome GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAG-ACTGGGGAACAG agcagtagttggccccgctgagcactgagtttttctttgttgtgtttcagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGGTGATCAACCCAGAGCACTGGGGAGCAGgtgaggaagccactatggggtgaggcaggtggaatgggggacacagccaa Alignment from Exonerate_coding2genome GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAG-ACTGGGGAACAG agcagtagttggccccgctgagcactgagtttttctttgttgtgtttcagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGGTGATCAACCCAGAGCACTGGGGAGCAGgtgaggaagccactatggggtgaggcaggtggaatgggggacacagccaa Alignment from GeneWise GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAG---------ACTGGGGAACAGATCCAGAGC-- agcagtagttggccccgctgagcactgagtttttctttgttgtgtttcagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGGTGATCAACCCAGAGCACTGGGGAGCAGGTGAGGAAGCCACTATGGGgtgaggcaggtggaatgggggacacagccaa #### Dpp3_ID743_10 --> 2 - 0 Original Alignment acGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTG-GCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tctcaatcactgctgctacctctgtcagaggactcctcttccctctgcagacGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGCGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAGgtaagggcaggcccccaagcctagggcttaactactttagtctggaaagg Alignment from CESAR acGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTG-GCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tctcaatcactgctgctacctctgtcagaggactcctcttccctctgcagacGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGCGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAGgtaagggcaggcccccaagcctagggcttaactactttagtctggaaagg Alignment from Spaln_aa2Genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTG-GCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tctcaatcactgctgctacctctgtcagaggactcctcttccctctgcagACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGcGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAGgtaagggcaggcccccaagcctagggcttaactactttagtctggaaagg Alignment from Spaln_nt2Genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTG-GCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tctcaatcactgctgctacctctgtcagaggactcctcttccctctgcagACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGCGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAGgtaagggcaggcccccaagcctagggcttaactactttagtctggaaagg Alignment from Pairagon ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTG-GCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tctcaatcactgctgctacctctgtcagaggactcctcttccctctgcagACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGCGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAGgtaagggcaggcccccaagcctagggcttaactactttagtctggaaagg Alignment from Exonerate_protein2genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTG-GCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tctcaatcactgctgctacctctgtcagaggactcctcttccctctgcagACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGCGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAGgtaagggcaggcccccaagcctagggcttaactactttagtctggaaagg Alignment from Exonerate_coding2genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTG-GCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tctcaatcactgctgctacctctgtcagaggactcctcttccctctgcagACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGCGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAGgtaagggcaggcccccaagcctagggcttaactactttagtctggaaagg Alignment from GeneWise ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTG-GCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tctcaatcactgctgctacctctgtcagaggactcctcttccctctgcagACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGCGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAGgtaagggcaggcccccaagcctagggcttaactactttagtctggaaagg #### Dpp3_ID745_8 --> 1 - 1 Original Alignment tTACATTGGCTTCATTGAGAGCTACCGTGACCCC-TTTGGCTCCCGAGGAGAGTTTGAAg tccaatgccttctgttggtttgccctcaactaatgttcttctgttctcagtTACATTGGCTTCATTGAAAGCTACCGTGATCCCCTTTGGCTCTCGAGGAGAGTTTGAAggtgagcacttggggagtggggggcttgggtgaaagtccctgtgtgctggt Alignment from CESAR tTACATTGGCTTCATTGAGAGCTACCGTGACCCC-TTTGGCTCCCGAGGAGAGTTTGAAg tccaatgccttctgttggtttgccctcaactaatgttcttctgttctcagtTACATTGGCTTCATTGAAAGCTACCGTGATCCCCTTTGGCTCTCGAGGAGAGTTTGAAggtgagcacttggggagtggggggcttgggtgaaagtccctgtgtgctggt Alignment from Spaln_aa2Genome TTACATTGGCTTCATTGAGAGCTACCGTGACCCC-TTTGGCTCCCGAGGAGAGTTTGAAG tccaatgccttctgttggtttgccctcaactaatgttcttctgttctcagTTACATTGGCTTCATTGAAAGCTACCGTGATCCCcTTTGGCTCTCGAGGAGAGTTTGAAGgtgagcacttggggagtggggggcttgggtgaaagtccctgtgtgctggt Alignment from Spaln_nt2Genome TTACATTGGCTTCATTGAGAGCTACCGTGACCCCT-TTGGCTCCCGAGGAGAGTTTGAAG tccaatgccttctgttggtttgccctcaactaatgttcttctgttctcagTTACATTGGCTTCATTGAAAGCTACCGTGATCCCCTTTGGCTCTCGAGGAGAGTTTGAAGgtgagcacttggggagtggggggcttgggtgaaagtccctgtgtgctggt Alignment from Pairagon TTACATTGGCTTCATTGAGAGCTACCGTGA-CCCCTTTGGCTCCCGAGGAGAGTTTGAAG tccaatgccttctgttggtttgccctcaactaatgttcttctgttctcagTTACATTGGCTTCATTGAAAGCTACCGTGATCCCCTTTGGCTCTCGAGGAGAGTTTGAAGgtgagcacttggggagtggggggcttgggtgaaagtccctgtgtgctggt Alignment from Exonerate_protein2genome TTACATTGGCTTCATTGAGAGCTACCGTGAC-CCCTTTGGCTCCCGAGGAGAGTTTGAAG tccaatgccttctgttggtttgccctcaactaatgttcttctgttctcagTTACATTGGCTTCATTGAAAGCTACCGTGATCCCCTTTGGCTCTCGAGGAGAGTTTGAAGgtgagcacttggggagtggggggcttgggtgaaagtccctgtgtgctggt Alignment from Exonerate_coding2genome TTACATTGGCTTCATTGAGAGCTACCGTGAC-CCCTTTGGCTCCCGAGGAGAGTTTGAAG tccaatgccttctgttggtttgccctcaactaatgttcttctgttctcagTTACATTGGCTTCATTGAAAGCTACCGTGATCCCCTTTGGCTCTCGAGGAGAGTTTGAAGgtgagcacttggggagtggggggcttgggtgaaagtccctgtgtgctggt Alignment from GeneWise TTACATTGGCTTCATTGAGAGCTACCGT-GACCCCTTTGGCTCCCGAGGAGAGTTTGAAG tccaatgccttctgttggtttgccctcaactaatgttcttctgttctcagTTACATTGGCTTCATTGAAAGCTACCGTGATCCCCTTTGGCTCTCGAGGAGAGTTTGAAGgtgagcacttggggagtggggggcttgggtgaaagtccctgtgtgctggt #### Drap1_ID985_5 --> 1 - 0 Original Alignment ag gGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAG-CTGTCCGGGACAGACTCTGAGCAGGAG aggtaagaagccaagacatggtctgcagtgtgcatttccctttgattcaggGGCCGTAAACCAGGGAGCAGTGGCAGGAAGAATGGAGGCACAGGAAGCAAAGGCAAAGACAAGAAGCCTGTCCGGGACAGACTCTGAGCAGGAGgtaagtaaggctggtgggcaatggccgcagccttgtctgcttttttgtac Alignment from CESAR ag gGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAG-CTGTCCGGGACAGACTCTGAGCAGGAG aggtagaaagccaagacatggtctgcagtgtgcatttccctttgattcaggGGCCGTAAACCAGGGAGCAGTGGCAGGAAGAATGGAGGCACAGGAAGCAAAGGCAAAGACAAGAAGCCTGTCCGGGACAGACTCTGAGCAGGAGgtaagtaaggctggtgggcaatggccgcagccttgtctgcttttttgtac Alignment from Spaln_aa2Genome AG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAG-CTGTCCGGGACAGACTCTGAGCAGGAG AGgtaagaagccaagacatggtctgcagtgtgcatttccctttgattcagGGGCCGTAAACCAGGGAGCAGTGGCAGGAAGAATGGAGGCACAGGAAGCAAAGGCAAAGACAAGAAGcCTGTCCGGGACAGACTCTGAGCAGGAGgtaagtaaggctggtgggcaatggccgcagccttgtctgcttttttgtac Alignment from Spaln_nt2Genome AG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAG-CTGTCCGGGACAGACTCTGAGCAGGAG AGgtaagaagccaagacatggtctgcagtgtgcatttccctttgattcagGGGCCGTAAACCAGGGAGCAGTGGCAGGAAGAATGGAGGCACAGGAAGCAAAGGCAAAGACAAGAAGCCTGTCCGGGACAGACTCTGAGCAGGAGgtaagtaaggctggtgggcaatggccgcagccttgtctgcttttttgtac Alignment from Pairagon AG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAG-CTGTCCGGGACAGACTCTGAGCAGGAG AGgtaagaagccaagacatggtctgcagtgtgcatttccctttgattcagGGGCCGTAAACCAGGGAGCAGTGGCAGGAAGAATGGAGGCACAGGAAGCAAAGGCAAAGACAAGAAGCCTGTCCGGGACAGACTCTGAGCAGGAGgtaagtaaggctggtgggcaatggccgcagccttgtctgcttttttgtac Alignment from Exonerate_protein2genome AG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAG-CTGTCCGGGACAGACTCTGAGCAGGAG AGgtaagaagccaagacatggtctgcagtgtgcatttccctttgattcagGGGCCGTAAACCAGGGAGCAGTGGCAGGAAGAATGGAGGCACAGGAAGCAAAGGCAAAGACAAGAAGCCTGTCCGGGACAGACTCTGAGCAGGAGgtaagtaaggctggtgggcaatggccgcagccttgtctgcttttttgtac Alignment from Exonerate_coding2genome AG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAG-CTGTCCGGGACAGACTCTGAGCAGGAG AGgtaagaagccaagacatggtctgcagtgtgcatttccctttgattcagGGGCCGTAAACCAGGGAGCAGTGGCAGGAAGAATGGAGGCACAGGAAGCAAAGGCAAAGACAAGAAGCCTGTCCGGGACAGACTCTGAGCAGGAGgtaagtaaggctggtgggcaatggccgcagccttgtctgcttttttgtac Alignment from GeneWise AG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAG-CTGTCCGGGACAGACTCTGAGCAGGAG AGgtaagaagccaagacatggtctgcagtgtgcatttccctttgattcagGGGCCGTAAACCAGGGAGCAGTGGCAGGAAGAATGGAGGCACAGGAAGCAAAGGCAAAGACAAGAAGCCTGTCCGGGACAGACTCTGAGCAGGAGgtaagtaaggctggtgggcaatggccgcagccttgtctgcttttttgtac #### Drap1_ID987_3 --> 2 - 2 Original Alignment ccCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGC-CAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACct ggggtgggactacagcactccacttttctgttaacacccacttgccctagccCGGGCCCTTGAGCTCTTCCTGGAGTCCCTCCTGAAGAAGGCTTGCCCAGGTGACCCAGTCTCGAAATGCAAAGACCATGACCACATCCCACctgtaagaggctgctgccaagctgggggggcttttggggggtcagaattcca Alignment from CESAR ccCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGC-CAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACct ggggtgggactacagcactccacttttctgttaacacccacttgccctagccCGGGCCCTTGAGCTCTTCCTGGAGTCCCTCCTGAAGAAGGCTTGCCCAGGTGACCCAGTCTCGAAATGCAAAGACCATGACCACATCCCACctgtaagaggctgctgccaagctgggggggcttttggggggtcagaattcca Alignment from Spaln_aa2Genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGC-CAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT ggggtgggactacagcactccacttttctgttaacacccacttgccctagCCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTCCTGAAGAAGGCTTGCcCAGGTGACCCAGTCTCGAAATGCAAAGACCATGACCACATCCCACCTgtaagaggctgctgccaagctgggggggcttttggggggtcagaattcca Alignment from Spaln_nt2Genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTG-CCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT ggggtgggactacagcactccacttttctgttaacacccacttgccctagCCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTCCTGAAGAAGGCTTGCCCAGGTGACCCAGTCTCGAAATGCAAAGACCATGACCACATCCCACCTgtaagaggctgctgccaagctgggggggcttttggggggtcagaattcca Alignment from Pairagon CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTG-CCAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT ggggtgggactacagcactccacttttctgttaacacccacttgccctagCCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTCCTGAAGAAGGCTTGCCCAGGTGACCCAGTCTCGAAATGCAAAGACCATGACCACATCCCACCTgtaagaggctgctgccaagctgggggggcttttggggggtcagaattcca Alignment from Exonerate_protein2genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGC-CAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT ggggtgggactacagcactccacttttctgttaacacccacttgccctagCCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTCCTGAAGAAGGCTTGCCCAGGTGACCCAGTCTCGAAATGCAAAGACCATGACCACATCCCACCTgtaagaggctgctgccaagctgggggggcttttggggggtcagaattcca Alignment from Exonerate_coding2genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGC-CAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT ggggtgggactacagcactccacttttctgttaacacccacttgccctagCCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTCCTGAAGAAGGCTTGCCCAGGTGACCCAGTCTCGAAATGCAAAGACCATGACCACATCCCACCTgtaagaggctgctgccaagctgggggggcttttggggggtcagaattcca Alignment from GeneWise CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGC-CAGGTGACCCAGTCTCGAAATGCCAAAACCATGACCACGTCCCACCT ggggtgggactacagcactccacttttctgttaacacccacttgccctagCCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTCCTGAAGAAGGCTTGCCCAGGTGACCCAGTCTCGAAATGCAAAGACCATGACCACATCCCACCTgtaagaggctgctgccaagctgggggggcttttggggggtcagaattcca #### Eef1g_ID2562_4 --> 2 - 0 Original Alignment taAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCAC-CACAACAAACAG ttaattttgtgatgtgctcaaagctctatcctgatcacaacctcccccagtaAGCAATGAGGAGCTGCGAGGAAGTGCACCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCGGACAGTGACATCGTTCCACCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCCACAACAAACAGgtatgttttttggcactcaggttggtgctgggccatagatagagtcaaag Alignment from CESAR taAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCAC-CACAACAAACAG ttaattttgtgatgtgctcaaagctctatcctgatcacaacctcccccagtaAGCAATGAGGAGCTGCGAGGAAGTGCACCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCGGACAGTGACATCGTTCCACCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCCACAACAAACAGgtatgttttttggcactcaggttggtgctgggccatagatagagtcaaag Alignment from Spaln_aa2Genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCAC-CACAACAAACAG ttaattttgtgatgtgctcaaagctctatcctgatcacaacctcccccagTAAGCAATGAGGAGCTGCGAGGAAGTGCACCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCGGACAGTGACATCGTTCCACCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACcCACAACAAACAGgtatgttttttggcactcaggttggtgctgggccatagatagagtcaaag Alignment from Spaln_nt2Genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACC-ACAACAAACAG ttaattttgtgatgtgctcaaagctctatcctgatcacaacctcccccagTAAGCAATGAGGAGCTGCGAGGAAGTGCACCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCGGACAGTGACATCGTTCCACCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCCACAACAAACAGgtatgttttttggcactcaggttggtgctgggccatagatagagtcaaag Alignment from Pairagon TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCA-CCACAACAAACAG ttaattttgtgatgtgctcaaagctctatcctgatcacaacctcccccagTAAGCAATGAGGAGCTGCGAGGAAGTGCACCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCGGACAGTGACATCGTTCCACCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCCACAACAAACAGgtatgttttttggcactcaggttggtgctgggccatagatagagtcaaag Alignment from Exonerate_protein2genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCAC-CACAACAAACAG ttaattttgtgatgtgctcaaagctctatcctgatcacaacctcccccagTAAGCAATGAGGAGCTGCGAGGAAGTGCACCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCGGACAGTGACATCGTTCCACCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCCACAACAAACAGgtatgttttttggcactcaggttggtgctgggccatagatagagtcaaag Alignment from Exonerate_coding2genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCAC-CACAACAAACAG ttaattttgtgatgtgctcaaagctctatcctgatcacaacctcccccagTAAGCAATGAGGAGCTGCGAGGAAGTGCACCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCGGACAGTGACATCGTTCCACCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCCACAACAAACAGgtatgttttttggcactcaggttggtgctgggccatagatagagtcaaag Alignment from GeneWise TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAA---------------------CAG ttaattttgtgatgtgctcaaagctctatcctgatcacaacctcccccagTAAGCAATGAGGAGCTGCGAGGAAGTGCACCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCGGACAGTGACATCGTTCCACCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCCACAACAAACAGGTATGTTTTTTGGCACTCAGgttggtgctgggccatagatagagtcaaag #### Eef1g_ID2567_9 --> 2 - 0 Original Alignment ggATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATC-CTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG ggaagaggagaagcaaaggtagtaggtattccctgactctttctgcacaggtATGTTCCAGCGACTGGACAAATTGAGGAAGAATGCCTTTGCTAGTGTTATCCCTCTTTGGAACTAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTTCGAGGCCAAGAGCTAGCCTTTCCAgtaaggaaggatgctgtgggaagagagagatcataataggggtccagggg Alignment from CESAR ggATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATC-CTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG ggaagaggagaagcaaaggtagtaggtattccctgactctttctgcacaggtATGTTCCAGCGACTGGACAAATTGAGGAAGAATGCCTTTGCTAGTGTTATCCCTCTTTGGAACTAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTTCGAGGCCAAGAGCTAGCCTTTCCAgtaaggaaggatgctgtgggaagagagagatcataataggggtccagggg Alignment from Spaln_aa2Genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATC-CTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG ggaagaggagaagcaaaggtagtaggtattccctgactctttctgcacagGTATGTTCCAGCGACTGGACAAATTGAGGAAGAATGCCTTTGCTAGTGTTATCcCTCTTTGGAACTAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTTCGAGGCCAAGAGCTAGCCTTTCCAgtaaggaaggatgctgtgggaagagagagatcataataggggtccagggg Alignment from Spaln_nt2Genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTAT-CCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG ggaagaggagaagcaaaggtagtaggtattccctgactctttctgcacagGTATGTTCCAGCGACTGGACAAATTGAGGAAGAATGCCTTTGCTAGTGTTATCCCTCTTTGGAACTAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTTCGAGGCCAAGAGCTAGCCTTTCCAgtaaggaaggatgctgtgggaagagagagatcataataggggtccagggg Alignment from Pairagon GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTAT-CCTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG ggaagaggagaagcaaaggtagtaggtattccctgactctttctgcacagGTATGTTCCAGCGACTGGACAAATTGAGGAAGAATGCCTTTGCTAGTGTTATCCCTCTTTGGAACTAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTTCGAGGCCAAGAGCTAGCCTTTCCAgtaaggaaggatgctgtgggaagagagagatcataataggggtccagggg Alignment from Exonerate_protein2genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATC-CTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG ggaagaggagaagcaaaggtagtaggtattccctgactctttctgcacagGTATGTTCCAGCGACTGGACAAATTGAGGAAGAATGCCTTTGCTAGTGTTATCCCTCTTTGGAACTAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTTCGAGGCCAAGAGCTAGCCTTTCCAgtaaggaaggatgctgtgggaagagagagatcataataggggtccagggg Alignment from Exonerate_coding2genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATC-CTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG ggaagaggagaagcaaaggtagtaggtattccctgactctttctgcacagGTATGTTCCAGCGACTGGACAAATTGAGGAAGAATGCCTTTGCTAGTGTTATCCCTCTTTGGAACTAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTTCGAGGCCAAGAGCTAGCCTTTCCAgtaaggaaggatgctgtgggaagagagagatcataataggggtccagggg Alignment from GeneWise GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATC-CTCTTTGGAACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG ggaagaggagaagcaaaggtagtaggtattccctgactctttctgcacagGTATGTTCCAGCGACTGGACAAATTGAGGAAGAATGCCTTTGCTAGTGTTATCCCTCTTTGGAACTAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTTCGAGGCCAAGAGCTAGCCTTTCCAgtaaggaaggatgctgtgggaagagagagatcataataggggtccagggg #### Efemp2_ID1029_2 --> 0 - 1 Original Alignment GAATGCACAGATGGCTATGAG-TGGGATGCAGACAGCCAGCACTGCCGGg ctagtggagacagcaataatggtcactgaatgtatatatttttctttgagGAATGCACAGATGGCTATGAGCTGGGATGCAGACAGCCAACACTGCCAGggtgagcccttgtctggggtactagccatgctcggcgggcctaggaagggg Alignment from CESAR GAATGCACAGATGGCTATGAG-TGGGATGCAGACAGCCAGCACTGCCGGg ctagtggagacagcaataatggtcactgaatgtatatatttttctttgagGAATGCACAGATGGCTATGAGCTGGGATGCAGACAGCCAACACTGCCAGggtgagcccttgtctggggtactagccatgctcggcgggcctaggaagggg Alignment from Spaln_aa2Genome GAATGCACAGATGGCTATGAG-TGGGATGCAGACAGCCAGCACTGCCGGG ctagtggagacagcaataatggtcactgaatgtatatatttttctttgagGAATGCACAGATGGCTATGAGcTGGGATGCAGACAGCCAACACTGCCAGGgtgagcccttgtctggggtactagccatgctcggcgggcctaggaagggg Alignment from Spaln_nt2Genome GAATGCACAGATGGCTATGAG-TGGGATGCAGACAGCCAGCACTGCCGGG ctagtggagacagcaataatggtcactgaatgtatatatttttctttgagGAATGCACAGATGGCTATGAGCTGGGATGCAGACAGCCAACACTGCCAGGgtgagcccttgtctggggtactagccatgctcggcgggcctaggaagggg Alignment from Pairagon GAATGCACAGATGGCTATGAG-TGGGATGCAGACAGCCAGCACTGCCGGG ctagtggagacagcaataatggtcactgaatgtatatatttttctttgagGAATGCACAGATGGCTATGAGCTGGGATGCAGACAGCCAACACTGCCAGGgtgagcccttgtctggggtactagccatgctcggcgggcctaggaagggg Alignment from Exonerate_protein2genome GAATGCACAGATGGCTATGAG-TGGGATGCAGACAGCCAGCACTGCCGGG ctagtggagacagcaataatggtcactgaatgtatatatttttctttgagGAATGCACAGATGGCTATGAGCTGGGATGCAGACAGCCAACACTGCCAGGgtgagcccttgtctggggtactagccatgctcggcgggcctaggaagggg Alignment from Exonerate_coding2genome GAATGCACAGATGGCTATGAG-TGGGATGCAGACAGCCAGCACTGCCGGG ctagtggagacagcaataatggtcactgaatgtatatatttttctttgagGAATGCACAGATGGCTATGAGCTGGGATGCAGACAGCCAACACTGCCAGGgtgagcccttgtctggggtactagccatgctcggcgggcctaggaagggg Alignment from GeneWise GAATGCACAGATGGCTAT-GAGTGGGATGCAGACAGCCAGCACTGCCGGG ctagtggagacagcaataatggtcactgaatgtatatatttttctttgagGAATGCACAGATGGCTATGAGCTGGGATGCAGACAGCCAACACTGCCAGGgtgagcccttgtctggggtactagccatgctcggcgggcctaggaagggg #### Efemp2_ID1032_5 --> 2 - 1 Original Alignment acATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGT-GTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGg aggggtggtatggcctgtgttccatttaggtggttttctttcatccacagacATAGATGAATGTCGTTACCGCTATTGCCAGCATCGATGTCGTGAACCTGCCAGGCTCGTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGggtttgtggctgtgtccgacaggattctgagatcctgggtgaacatgtgtg Alignment from CESAR acATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGT-GTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGg aggggtggtatggcctgtgttccatttaggtggttttctttcatccacagacATAGATGAATGTCGTTACCGCTATTGCCAGCATCGATGTCGTGAACCTGCCAGGCTCGTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGggtttgtggctgtgtccgacaggattctgagatcctgggtgaacatgtgtg Alignment from Spaln_aa2Genome ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGT-GTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG aggggtggtatggcctgtgttccatttaggtggttttctttcatccacagACATAGATGAATGTCGTTACCGCTATTGCCAGCATCGATGTcGTGAACCTGCCAGGCTCGTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGGgtttgtggctgtgtccgacaggattctgagatcctgggtgaacatgtgtg Alignment from Spaln_nt2Genome ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGT-GTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG aggggtggtatggcctgtgttccatttaggtggttttctttcatccacagACATAGATGAATGTCGTTACCGCTATTGCCAGCATCGATGTCGTGAACCTGCCAGGCTCGTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGGgtttgtggctgtgtccgacaggattctgagatcctgggtgaacatgtgtg Alignment from Pairagon ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGT-GTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG aggggtggtatggcctgtgttccatttaggtggttttctttcatccacagACATAGATGAATGTCGTTACCGCTATTGCCAGCATCGATGTCGTGAACCTGCCAGGCTCGTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGGgtttgtggctgtgtccgacaggattctgagatcctgggtgaacatgtgtg Alignment from Exonerate_protein2genome ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGT-GTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG aggggtggtatggcctgtgttccatttaggtggttttctttcatccacagACATAGATGAATGTCGTTACCGCTATTGCCAGCATCGATGTCGTGAACCTGCCAGGCTCGTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGGgtttgtggctgtgtccgacaggattctgagatcctgggtgaacatgtgtg Alignment from Exonerate_coding2genome ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGT-GTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG aggggtggtatggcctgtgttccatttaggtggttttctttcatccacagACATAGATGAATGTCGTTACCGCTATTGCCAGCATCGATGTCGTGAACCTGCCAGGCTCGTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGGgtttgtggctgtgtccgacaggattctgagatcctgggtgaacatgtgtg Alignment from GeneWise ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGT-GTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG aggggtggtatggcctgtgttccatttaggtggttttctttcatccacagACATAGATGAATGTCGTTACCGCTATTGCCAGCATCGATGTCGTGAACCTGCCAGGCTCGTTTCGATGCCAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGGgtttgtggctgtgtccgacaggattctgagatcctgggtgaacatgtgtg #### Efemp2_ID1035_8 --> 2 - 2 Original Alignment atATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGT-TGTGTGGAGCCCTATGTCCAAGTGTCAGACaa acttactatgagtactatactagacccccacaactagcctctttcctcagatATCGATGATTGCGAAACAGGCGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGGCGGTTACCGCTGTGTGGAAACCAACCGTCTGTGTGGAGCCCTATGTCCAAGTGTCAGACaagtgagtccacctggcgcccatttggtgtgcagctccagatgtctgtgggg Alignment from CESAR atATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGT-TGTGTGGAGCCCTATGTCCAAGTGTCAGACaa acttactatgagtactatactagacccccacaactagcctctttcctcagatATCGATGATTGCGAAACAGGCGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGGCGGTTACCGCTGTGTGGAAACCAACCGTCTGTGTGGAGCCCTATGTCCAAGTGTCAGACaagtgagtccacctggcgcccatttggtgtgcagctccagatgtctgtgggg Alignment from Spaln_aa2Genome ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGT-TGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttactatgagtactatactagacccccacaactagcctctttcctcagATATCGATGATTGCGAAACAGGCGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGGCGGTTACCGCTGTGTGGAAACCAACCGTcTGTGTGGAGCCCTATGTCCAAGTGTCAGACAAgtgagtccacctggcgcccatttggtgtgcagctccagatgtctgtgggg Alignment from Spaln_nt2Genome ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGT-TGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttactatgagtactatactagacccccacaactagcctctttcctcagATATCGATGATTGCGAAACAGGCGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGGCGGTTACCGCTGTGTGGAAACCAACCGTCTGTGTGGAGCCCTATGTCCAAGTGTCAGACAAgtgagtccacctggcgcccatttggtgtgcagctccagatgtctgtgggg Alignment from Pairagon ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGT-TGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttactatgagtactatactagacccccacaactagcctctttcctcagATATCGATGATTGCGAAACAGGCGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGGCGGTTACCGCTGTGTGGAAACCAACCGTCTGTGTGGAGCCCTATGTCCAAGTGTCAGACAAgtgagtccacctggcgcccatttggtgtgcagctccagatgtctgtgggg Alignment from Exonerate_protein2genome ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGT-TGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttactatgagtactatactagacccccacaactagcctctttcctcagATATCGATGATTGCGAAACAGGCGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGGCGGTTACCGCTGTGTGGAAACCAACCGTCTGTGTGGAGCCCTATGTCCAAGTGTCAGACAAgtgagtccacctggcgcccatttggtgtgcagctccagatgtctgtgggg Alignment from Exonerate_coding2genome ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGT-TGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttactatgagtactatactagacccccacaactagcctctttcctcagATATCGATGATTGCGAAACAGGCGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGGCGGTTACCGCTGTGTGGAAACCAACCGTCTGTGTGGAGCCCTATGTCCAAGTGTCAGACAAgtgagtccacctggcgcccatttggtgtgcagctccagatgtctgtgggg Alignment from GeneWise ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAAC-CGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttactatgagtactatactagacccccacaactagcctctttcctcagATATCGATGATTGCGAAACAGGCGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGGCGGTTACCGCTGTGTGGAAACCAACCGTCTGTGTGGAGCCCTATGTCCAAGTGTCAGACAAgtgagtccacctggcgcccatttggtgtgcagctccagatgtctgtgggg #### Ehbp1l1_ID1217_18 --> 2 - 2 Original Alignment agTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTG-GAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGat tggcttcttagaatggcagaagaagtctactatgccactcccctctgcagaaTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGCTGCGAGGAGCTTGTGTCCTTAGTGAACCAGAGGGAAGAACTGGTCCGGGACCTGGACCAGAAGGAGCGGgtgtgagtacctgggtggctttggttttgaagaacccccagggtgcaccact Alignment from CESAR agTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTG-GAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGat tggcttcttagaatggcagaagaagtctactatgccactcccctctgcagaaTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGCTGCGAGGAGCTTGTGTCCTTAGTGAACCAGAGGGAAGAACTGGTCCGGGACCTGGACCAGAAGGAGCGGgtgtgagtacctgggtggctttggttttgaagaacccccagggtgcaccact Alignment from Spaln_aa2Genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTG-GAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT tggcttcttagaatggcagaagaagtctactatgccactcccctctgcagAATGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGCTGcGAGGAGCTTGTGTCCTTAGTGAACCAGAGGGAAGAACTGGTCCGGGACCTGGACCAGAAGGAGCGGGTgtgagtacctgggtggctttggttttgaagaacccccagggtgcaccact Alignment from Spaln_nt2Genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTG-GAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT tggcttcttagaatggcagaagaagtctactatgccactcccctctgcagAATGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGCTGCGAGGAGCTTGTGTCCTTAGTGAACCAGAGGGAAGAACTGGTCCGGGACCTGGACCAGAAGGAGCGGGTgtgagtacctgggtggctttggttttgaagaacccccagggtgcaccact Alignment from Pairagon AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTG-GAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT tggcttcttagaatggcagaagaagtctactatgccactcccctctgcagAATGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGCTGCGAGGAGCTTGTGTCCTTAGTGAACCAGAGGGAAGAACTGGTCCGGGACCTGGACCAGAAGGAGCGGGTgtgagtacctgggtggctttggttttgaagaacccccagggtgcaccact Alignment from Exonerate_protein2genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTG-GAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT tggcttcttagaatggcagaagaagtctactatgccactcccctctgcagAATGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGCTGCGAGGAGCTTGTGTCCTTAGTGAACCAGAGGGAAGAACTGGTCCGGGACCTGGACCAGAAGGAGCGGGTgtgagtacctgggtggctttggttttgaagaacccccagggtgcaccact Alignment from Exonerate_coding2genome AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGTTG-GAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT tggcttcttagaatggcagaagaagtctactatgccactcccctctgcagAATGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGCTGCGAGGAGCTTGTGTCCTTAGTGAACCAGAGGGAAGAACTGGTCCGGGACCTGGACCAGAAGGAGCGGGTgtgagtacctgggtggctttggttttgaagaacccccagggtgcaccact Alignment from GeneWise AGTGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTG-TTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT tggcttcttagaatggcagaagaagtctactatgccactcccctctgcagAATGGCAGAAAACAGTTGCGCAGCAGCACCGCGAGCAACTCCTGCTGCGAGGAGCTTGTGTCCTTAGTGAACCAGAGGGAAGAACTGGTCCGGGACCTGGACCAGAAGGAGCGGGTgtgagtacctgggtggctttggttttgaagaacccccagggtgcaccact #### Ehbp1l1_ID1221_14 --> 2 - 0 Original Alignment gtGGGCCCCCTCCTACTGAG-GAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG gggaatttctgttattaactggagggacatacttttcatttttcccctaggtGGGCCCCCTCCTACCGAACAAGTCATCACCTAGCCTGGAGGAAGAGACAGGCCTGgtaggtatagttaggtgggagagtggctgtggtactttccaagctggctg Alignment from CESAR gtGGGCCCCCTCCTACTGAG-GAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG gggaatttctgttattaactggagggacatacttttcatttttcccctaggtGGGCCCCCTCCTACCGAACAAGTCATCACCTAGCCTGGAGGAAGAGACAGGCCTGgtaggtatagttaggtgggagagtggctgtggtactttccaagctggctg Alignment from Spaln_aa2Genome GTGGGCCCCCTCCTACTGAGGAG-TCATCACCCAGCCTGGGGGAAGAGACAGGCCTG gggaatttctgttattaactggagggacatacttttcatttttcccctagGTGGGCCCCCTCCTACCGAACAAgTCATCACCTAGCCTGGAGGAAGAGACAGGCCTGgtaggtatagttaggtgggagagtggctgtggtactttccaagctggctg Alignment from Spaln_nt2Genome GTGGGCCCCCTCCTACTGAGGA-GTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG gggaatttctgttattaactggagggacatacttttcatttttcccctagGTGGGCCCCCTCCTACCGAACAAGTCATCACCTAGCCTGGAGGAAGAGACAGGCCTGgtaggtatagttaggtgggagagtggctgtggtactttccaagctggctg Alignment from Pairagon GTGGGCCCCCTCCTACTGAG-GAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG gggaatttctgttattaactggagggacatacttttcatttttcccctagGTGGGCCCCCTCCTACCGAACAAGTCATCACCTAGCCTGGAGGAAGAGACAGGCCTGgtaggtatagttaggtgggagagtggctgtggtactttccaagctggctg Alignment from Exonerate_protein2genome GTGGGCCCCCTCCTACTGAGGAG-TCATCACCCAGCCTGGGGGAAGAGACAGGCCTG gggaatttctgttattaactggagggacatacttttcatttttcccctagGTGGGCCCCCTCCTACCGAACAAGTCATCACCTAGCCTGGAGGAAGAGACAGGCCTGgtaggtatagttaggtgggagagtggctgtggtactttccaagctggctg Alignment from Exonerate_coding2genome GTGGGCCCCCTCCTACTGAGGAG-TCATCACCCAGCCTGGGGGAAGAGACAGGCCTG gggaatttctgttattaactggagggacatacttttcatttttcccctagGTGGGCCCCCTCCTACCGAACAAGTCATCACCTAGCCTGGAGGAAGAGACAGGCCTGgtaggtatagttaggtgggagagtggctgtggtactttccaagctggctg Alignment from GeneWise GTGGGCCCCCTCCTACTGAG-GAGTCATCACCCAGCCTGGGGGAAGAGACAGGCCTG gggaatttctgttattaactggagggacatacttttcatttttcccctagGTGGGCCCCCTCCTACCGAACAAGTCATCACCTAGCCTGGAGGAAGAGACAGGCCTGgtaggtatagttaggtgggagagtggctgtggtactttccaagctggctg #### Ehbp1l1_ID1225_10 --> 0 - 2 Original Alignment GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAG-TGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGat agatcatgtgaatcagagtacatcccctcatctgaatgttgtactttcagGCACCACCTACCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGCTGGTGCCAAGAAGTAACCAACGGCTACCGTGGTGTCTGCATCACCAAATTCACCACGTCCTGGCGCAACGGCCTGGCCTTTTGTGCTATTTTACATCGATTCTACCCTGACAAGatgtaccacaagggtcagggggtgggtggggtatgagactgccaggacacca Alignment from CESAR GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAG-TGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGat agatcatgtgaatcagagtacatcccctcatctgaatgttgtactttcagGCACCACCTACCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGCTGGTGCCAAGAAGTAACCAACGGCTACCGTGGTGTCTGCATCACCAAATTCACCACGTCCTGGCGCAACGGCCTGGCCTTTTGTGCTATTTTACATCGATTCTACCCTGACAAGatgtaccacaagggtcagggggtgggtggggtatgagactgccaggacacca Alignment from Spaln_aa2Genome GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAG-TGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT agatcatgtgaatcagagtacatcccctcatctgaatgttgtactttcagGCACCACCTACCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGcTGGTGCCAAGAAGTAACCAACGGCTACCGTGGTGTCTGCATCACCAAATTCACCACGTCCTGGCGCAACGGCCTGGCCTTTTGTGCTATTTTACATCGATTCTACCCTGACAAGATgtaccacaagggtcagggggtgggtggggtatgagactgccaggacacca Alignment from Spaln_nt2Genome GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAG-TGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT agatcatgtgaatcagagtacatcccctcatctgaatgttgtactttcagGCACCACCTACCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGCTGGTGCCAAGAAGTAACCAACGGCTACCGTGGTGTCTGCATCACCAAATTCACCACGTCCTGGCGCAACGGCCTGGCCTTTTGTGCTATTTTACATCGATTCTACCCTGACAAGATgtaccacaagggtcagggggtgggtggggtatgagactgccaggacacca Alignment from Pairagon GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAG-TGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT agatcatgtgaatcagagtacatcccctcatctgaatgttgtactttcagGCACCACCTACCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGCTGGTGCCAAGAAGTAACCAACGGCTACCGTGGTGTCTGCATCACCAAATTCACCACGTCCTGGCGCAACGGCCTGGCCTTTTGTGCTATTTTACATCGATTCTACCCTGACAAGATgtaccacaagggtcagggggtgggtggggtatgagactgccaggacacca Alignment from Exonerate_protein2genome GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAG-TGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT agatcatgtgaatcagagtacatcccctcatctgaatgttgtactttcagGCACCACCTACCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGCTGGTGCCAAGAAGTAACCAACGGCTACCGTGGTGTCTGCATCACCAAATTCACCACGTCCTGGCGCAACGGCCTGGCCTTTTGTGCTATTTTACATCGATTCTACCCTGACAAGATgtaccacaagggtcagggggtgggtggggtatgagactgccaggacacca Alignment from Exonerate_coding2genome GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAG-TGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT agatcatgtgaatcagagtacatcccctcatctgaatgttgtactttcagGCACCACCTACCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGCTGGTGCCAAGAAGTAACCAACGGCTACCGTGGTGTCTGCATCACCAAATTCACCACGTCCTGGCGCAACGGCCTGGCCTTTTGTGCTATTTTACATCGATTCTACCCTGACAAGATgtaccacaagggtcagggggtgggtggggtatgagactgccaggacacca Alignment from GeneWise GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTG-GAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT agatcatgtgaatcagagtacatcccctcatctgaatgttgtactttcagGCACCACCTACCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGCTGGTGCCAAGAAGTAACCAACGGCTACCGTGGTGTCTGCATCACCAAATTCACCACGTCCTGGCGCAACGGCCTGGCCTTTTGTGCTATTTTACATCGATTCTACCCTGACAAGATgtaccacaagggtcagggggtgggtggggtatgagactgccaggacacca #### Ehbp1l1_ID1228_7 --> 2 - 1 Original Alignment atCTGTCTCGAGAGCTGAAGACACTCTGTGAA-GAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAg aaccatatgccctgatctgatttcacccgtggtggtctggaacttctcagatCTGTCTCGAGAGCTGAAGACACTCTGTGAGCGAAGAAGATGAAGGCCACATACGTCCCCAGCAGTCAagtttgtcctggcctgggaatggggttgcagactgaacctacataacgatg Alignment from CESAR atCTGTCTCGAGAGCTGAAGACACTCTGTGAA-GAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAg aaccatatgccctgatctgatttcacccgtggtggtctggaacttctcagatCTGTCTCGAGAGCTGAAGACACTCTGTGAGCGAAGAAGATGAAGGCCACATACGTCCCCAGCAGTCAagtttgtcctggcctgggaatggggttgcagactgaacctacataacgatg Alignment from Spaln_aa2Genome ATCTGTCTCGAGAGCTGAAGACACTCTGTGAA-GAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAG aaccatatgccctgatctgatttcacccgtggtggtctggaacttctcagATCTGTCTCGAGAGCTGAAGACACTCTGTGAGcGAAGAAGATGAAGGCCACATACGTCCCCAGCAGTCAAgtttgtcctggcctgggaatggggttgcagactgaacctacataacgatg Alignment from Spaln_nt2Genome ATCTGTCTCGAGAGCTGAAGACACTCTGTGAA-GAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAG aaccatatgccctgatctgatttcacccgtggtggtctggaacttctcagATCTGTCTCGAGAGCTGAAGACACTCTGTGAGCGAAGAAGATGAAGGCCACATACGTCCCCAGCAGTCAAgtttgtcctggcctgggaatggggttgcagactgaacctacataacgatg Alignment from Pairagon ATCTGTCTCGAGAGCTGAAGACACTCTGTGAA-GAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAG aaccatatgccctgatctgatttcacccgtggtggtctggaacttctcagATCTGTCTCGAGAGCTGAAGACACTCTGTGAGCGAAGAAGATGAAGGCCACATACGTCCCCAGCAGTCAAgtttgtcctggcctgggaatggggttgcagactgaacctacataacgatg Alignment from Exonerate_protein2genome ATCTGTCTCGAGAGCTGAAGACACTCTGTGAA-GAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAG aaccatatgccctgatctgatttcacccgtggtggtctggaacttctcagATCTGTCTCGAGAGCTGAAGACACTCTGTGAGCGAAGAAGATGAAGGCCACATACGTCCCCAGCAGTCAAgtttgtcctggcctgggaatggggttgcagactgaacctacataacgatg Alignment from Exonerate_coding2genome ATCTGTCTCGAGAGCTGAAGACACTCTGTGAA-GAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAG aaccatatgccctgatctgatttcacccgtggtggtctggaacttctcagATCTGTCTCGAGAGCTGAAGACACTCTGTGAGCGAAGAAGATGAAGGCCACATACGTCCCCAGCAGTCAAgtttgtcctggcctgggaatggggttgcagactgaacctacataacgatg Alignment from GeneWise ATCTGTCTCGAGAGCTGAAGACACTCTGT-GAAGAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAG aaccatatgccctgatctgatttcacccgtggtggtctggaacttctcagATCTGTCTCGAGAGCTGAAGACACTCTGTGAGCGAAGAAGATGAAGGCCACATACGTCCCCAGCAGTCAAgtttgtcctggcctgggaatggggttgcagactgaacctacataacgatg #### Eif3a_ID13316_14 --> 0 - 0 Original Alignment ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAG-AGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA acttgctccaaatctgtgtgcagacccatttggtcatcctggggcgacagATTGACTATTTTGAGAGGGTTAAGCGCTTGGAGGAAATTCCTTTGATAAAGCAGTGCATATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGGgtaagattttcaattgattgtgacatcataaatcaaaactaagttataag Alignment from CESAR ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAG-AGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA acttgctccaaatctgtgtgcagacccatttggtcatcctggggcgacagATTGACTATTTTGAGAGGGTTAAGCGCTTGGAGGAAATTCCTTTGATAAAGCAGTGCATATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGGgtaagattttcaattgattgtgacatcataaatcaaaactaagttataag Alignment from Spaln_aa2Genome ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAG-AGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA acttgctccaaatctgtgtgcagacccatttggtcatcctggggcgacagATTGACTATTTTGAGAGGGTTAAGCGCTTGGAGGAAATTCCTTTGATAAAGcAGTGCATATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGGgtaagattttcaattgattgtgacatcataaatcaaaactaagttataag Alignment from Spaln_nt2Genome ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAG-AGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA acttgctccaaatctgtgtgcagacccatttggtcatcctggggcgacagATTGACTATTTTGAGAGGGTTAAGCGCTTGGAGGAAATTCCTTTGATAAAGCAGTGCATATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGGgtaagattttcaattgattgtgacatcataaatcaaaactaagttataag Alignment from Pairagon ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAG-AGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA acttgctccaaatctgtgtgcagacccatttggtcatcctggggcgacagATTGACTATTTTGAGAGGGTTAAGCGCTTGGAGGAAATTCCTTTGATAAAGCAGTGCATATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGGgtaagattttcaattgattgtgacatcataaatcaaaactaagttataag Alignment from Exonerate_protein2genome ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAG-AGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA acttgctccaaatctgtgtgcagacccatttggtcatcctggggcgacagATTGACTATTTTGAGAGGGTTAAGCGCTTGGAGGAAATTCCTTTGATAAAGCAGTGCATATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGGgtaagattttcaattgattgtgacatcataaatcaaaactaagttataag Alignment from Exonerate_coding2genome ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAG-AGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA acttgctccaaatctgtgtgcagacccatttggtcatcctggggcgacagATTGACTATTTTGAGAGGGTTAAGCGCTTGGAGGAAATTCCTTTGATAAAGCAGTGCATATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGGgtaagattttcaattgattgtgacatcataaatcaaaactaagttataag Alignment from GeneWise ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAG-AGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA acttgctccaaatctgtgtgcagacccatttggtcatcctggggcgacagATTGACTATTTTGAGAGGGTTAAGCGCTTGGAGGAAATTCCTTTGATAAAGCAGTGCATATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGGgtaagattttcaattgattgtgacatcataaatcaaaactaagttataag #### Eif3a_ID13327_3 --> 0 - 2 Original Alignment GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATAT-TTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGag gctgtccctcttagggtaaacattaaatcccacctccttcccctccacagGTAAACATTAAATCTTTAAAGGATGTTGTTAGGGCATATCTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATCCAGACTCCTGAGaggtgaggactatcaaggcacttcttaccatgaggtaatgttttgcaccaaa Alignment from CESAR GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATAT-TTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGag gctgtccctcttagggtaaacattaaatcccacctccttcccctccacagGTAAACATTAAATCTTTAAAGGATGTTGTTAGGGCATATCTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATCCAGACTCCTGAGaggtgaggactatcaaggcacttcttaccatgaggtaatgttttgcaccaaa Alignment from Spaln_aa2Genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTG-AAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG gctgtccctcttagggtaaacattaaatcccacctccttcccctccacagGTAAACATTAAATCTTTAAAGGATGTTGTTAGGGCATATCTTgAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtgaggactatcaaggcacttcttaccatgaggtaatgttttgcaccaaa Alignment from Spaln_nt2Genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATAT-TTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG gctgtccctcttagggtaaacattaaatcccacctccttcccctccacagGTAAACATTAAATCTTTAAAGGATGTTGTTAGGGCATATCTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtgaggactatcaaggcacttcttaccatgaggtaatgttttgcaccaaa Alignment from Pairagon GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATAT-TTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG gctgtccctcttagggtaaacattaaatcccacctccttcccctccacagGTAAACATTAAATCTTTAAAGGATGTTGTTAGGGCATATCTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtgaggactatcaaggcacttcttaccatgaggtaatgttttgcaccaaa Alignment from Exonerate_protein2genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATAT-TTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG gctgtccctcttagggtaaacattaaatcccacctccttcccctccacagGTAAACATTAAATCTTTAAAGGATGTTGTTAGGGCATATCTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtgaggactatcaaggcacttcttaccatgaggtaatgttttgcaccaaa Alignment from Exonerate_coding2genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATAT-TTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG gctgtccctcttagggtaaacattaaatcccacctccttcccctccacagGTAAACATTAAATCTTTAAAGGATGTTGTTAGGGCATATCTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtgaggactatcaaggcacttcttaccatgaggtaatgttttgcaccaaa Alignment from GeneWise GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATAT-TTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATTCAGACTCCTGAGAG gctgtccctcttagggtaaacattaaatcccacctccttcccctccacagGTAAACATTAAATCTTTAAAGGATGTTGTTAGGGCATATCTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGATATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtgaggactatcaaggcacttcttaccatgaggtaatgttttgcaccaaa #### Eml3_ID2508_7 --> 1 - 2 Original Alignment tTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTG-GTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGAtg tcccttcctccacttcctgtccttcatcccatggggtgctctatccccagtTATGGGTACAGGGGTCACGACTCTCGCTCAAATCTATTTGTGCTGCGCTCTGGGGAGGTGCGTCTACTTTATTGCCTGTGTAGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCAGGAGGTGGTGGTCAGAGACACTACCGGGGTCACACAGACTGTGTTCGTtggtaagtatcttggtggggccgctgggcttggcacaaagagggtaggtcta Alignment from CESAR tTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTG-GTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGAtg tcccttcctccacttcctgtccttcatcccatggggtgctctatccccagtTATGGGTACAGGGGTCACGACTCTCGCTCAAATCTATTTGTGCTGCGCTCTGGGGAGGTGCGTCTACTTTATTGCCTGTGTAGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCAGGAGGTGGTGGTCAGAGACACTACCGGGGTCACACAGACTGTGTTCGTtggtaagtatcttggtggggccgctgggcttggcacaaagagggtaggtcta Alignment from Spaln_aa2Genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTG-GTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctccacttcctgtccttcatcccatggggtgctctatccccagTTATGGGTACAGGGGTCACGACTCTCGCTCAAATCTATTTGTGCTGCGCTCTGGGGAGGTGcGTCTACTTTATTGCCTGTGTAGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCAGGAGGTGGTGGTCAGAGACACTACCGGGGTCACACAGACTGTGTTCGTTGgtaagtatcttggtggggccgctgggcttggcacaaagagggtaggtcta Alignment from Spaln_nt2Genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTG-GTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctccacttcctgtccttcatcccatggggtgctctatccccagTTATGGGTACAGGGGTCACGACTCTCGCTCAAATCTATTTGTGCTGCGCTCTGGGGAGGTGCGTCTACTTTATTGCCTGTGTAGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCAGGAGGTGGTGGTCAGAGACACTACCGGGGTCACACAGACTGTGTTCGTTGgtaagtatcttggtggggccgctgggcttggcacaaagagggtaggtcta Alignment from Pairagon TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTG-GTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctccacttcctgtccttcatcccatggggtgctctatccccagTTATGGGTACAGGGGTCACGACTCTCGCTCAAATCTATTTGTGCTGCGCTCTGGGGAGGTGCGTCTACTTTATTGCCTGTGTAGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCAGGAGGTGGTGGTCAGAGACACTACCGGGGTCACACAGACTGTGTTCGTTGgtaagtatcttggtggggccgctgggcttggcacaaagagggtaggtcta Alignment from Exonerate_protein2genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTG-GTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctccacttcctgtccttcatcccatggggtgctctatccccagTTATGGGTACAGGGGTCACGACTCTCGCTCAAATCTATTTGTGCTGCGCTCTGGGGAGGTGCGTCTACTTTATTGCCTGTGTAGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCAGGAGGTGGTGGTCAGAGACACTACCGGGGTCACACAGACTGTGTTCGTTGgtaagtatcttggtggggccgctgggcttggcacaaagagggtaggtcta Alignment from Exonerate_coding2genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTG-GTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctccacttcctgtccttcatcccatggggtgctctatccccagTTATGGGTACAGGGGTCACGACTCTCGCTCAAATCTATTTGTGCTGCGCTCTGGGGAGGTGCGTCTACTTTATTGCCTGTGTAGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCAGGAGGTGGTGGTCAGAGACACTACCGGGGTCACACAGACTGTGTTCGTTGgtaagtatcttggtggggccgctgggcttggcacaaagagggtaggtcta Alignment from GeneWise TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTG-GTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctccacttcctgtccttcatcccatggggtgctctatccccagTTATGGGTACAGGGGTCACGACTCTCGCTCAAATCTATTTGTGCTGCGCTCTGGGGAGGTGCGTCTACTTTATTGCCTGTGTAGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCAGGAGGTGGTGGTCAGAGACACTACCGGGGTCACACAGACTGTGTTCGTTGgtaagtatcttggtggggccgctgggcttggcacaaagagggtaggtcta #### Eml3_ID2509_8 --> 1 - 0 Original Alignment cCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCT-GGAGTGGACAAGGATGGAAAG ctttggtagtcttgagtgagattttctactgagtgttccttcccccacagtCTTGCTGTTCATCCTGATGGTGTTCATGTAGCTTCTGGACAGACAGCTCGGAGTGGACAAGGATGGAAAGgtgaagtcaaggagggtactgaacagataagatgagattacaggtcagct Alignment from CESAR cCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCT-GGAGTGGACAAGGATGGAAAG ctttggtagtcttgagtgagattttctactgagtgttccttcccccacagtCTTGCTGTTCATCCTGATGGTGTTCATGTAGCTTCTGGACAGACAGCTCGGAGTGGACAAGGATGGAAAGgtgaagtcaaggagggtactgaacagataagatgagattacaggtcagct Alignment from Spaln_aa2Genome CCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCT-GGAGTGGACAAGGATGGAAAG ctttggtagtcttgagtgagattttctactgagtgttccttcccccacagTCTTGCTGTTCATCCTGATGGTGTTCATGTAGCTTCTGGACAGACAGCTcGGAGTGGACAAGGATGGAAAGgtgaagtcaaggagggtactgaacagataagatgagattacaggtcagct Alignment from Spaln_nt2Genome CCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCTG-GAGTGGACAAGGATGGAAAG ctttggtagtcttgagtgagattttctactgagtgttccttcccccacagTCTTGCTGTTCATCCTGATGGTGTTCATGTAGCTTCTGGACAGACAGCTCGGAGTGGACAAGGATGGAAAGgtgaagtcaaggagggtactgaacagataagatgagattacaggtcagct Alignment from Pairagon CCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCT-GGAGTGGACAAGGATGGAAAG ctttggtagtcttgagtgagattttctactgagtgttccttcccccacagTCTTGCTGTTCATCCTGATGGTGTTCATGTAGCTTCTGGACAGACAGCTCGGAGTGGACAAGGATGGAAAGgtgaagtcaaggagggtactgaacagataagatgagattacaggtcagct Alignment from Exonerate_protein2genome CCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCT-GGAGTGGACAAGGATGGAAAG ctttggtagtcttgagtgagattttctactgagtgttccttcccccacagTCTTGCTGTTCATCCTGATGGTGTTCATGTAGCTTCTGGACAGACAGCTCGGAGTGGACAAGGATGGAAAGgtgaagtcaaggagggtactgaacagataagatgagattacaggtcagct Alignment from Exonerate_coding2genome CCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCT-GGAGTGGACAAGGATGGAAAG ctttggtagtcttgagtgagattttctactgagtgttccttcccccacagTCTTGCTGTTCATCCTGATGGTGTTCATGTAGCTTCTGGACAGACAGCTCGGAGTGGACAAGGATGGAAAGgtgaagtcaaggagggtactgaacagataagatgagattacaggtcagct Alignment from GeneWise CCTTGCTGTTCACCCTGATGGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAG ctttggtagtcttgagtgagattttctactgagtgttccttcccccacagTCTTGCTGTTCATCCTGATGGTGTTCATGTAGCTTCTGGACAGACAGCTCGGAgtggacaaggatggaaaggtgaagtcaaggagggtactgaacagataagatgagattacaggtcagct #### Eml3_ID2510_9 --> 0 - 0 Original Alignment CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAA-CTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattacaggtcagctttttttcccggcttgacccaacccttttctttcagCCCCTGCAGCCTGTGGTTCATATCTGGGACTCAGAGACACTCCTGAAACCTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtaggatgagcatgaagcatggagcttgtgatcttgcttgtttgtttgtt Alignment from CESAR CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAA-CTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattacaggtcagctttttttcccggcttgacccaacccttttctttcagCCCCTGCAGCCTGTGGTTCATATCTGGGACTCAGAGACACTCCTGAAACCTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtaggatgagcatgaagcatggagcttgtgatcttgcttgtttgtttgtt Alignment from Spaln_aa2Genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAA-CTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattacaggtcagctttttttcccggcttgacccaacccttttctttcagCCCCTGCAGCCTGTGGTTCATATCTGGGACTCAGAGACACTCCTGAAAcCTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtaggatgagcatgaagcatggagcttgtgatcttgcttgtttgtttgtt Alignment from Spaln_nt2Genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTA-AAACTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattacaggtcagctttttttcccggcttgacccaacccttttctttcagCCCCTGCAGCCTGTGGTTCATATCTGGGACTCAGAGACACTCCTGAAACCTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtaggatgagcatgaagcatggagcttgtgatcttgcttgtttgtttgtt Alignment from Pairagon CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAA-CTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattacaggtcagctttttttcccggcttgacccaacccttttctttcagCCCCTGCAGCCTGTGGTTCATATCTGGGACTCAGAGACACTCCTGAAACCTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtaggatgagcatgaagcatggagcttgtgatcttgcttgtttgtttgtt Alignment from Exonerate_protein2genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAA-CTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattacaggtcagctttttttcccggcttgacccaacccttttctttcagCCCCTGCAGCCTGTGGTTCATATCTGGGACTCAGAGACACTCCTGAAACCTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtaggatgagcatgaagcatggagcttgtgatcttgcttgtttgtttgtt Alignment from Exonerate_coding2genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAA-CTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattacaggtcagctttttttcccggcttgacccaacccttttctttcagCCCCTGCAGCCTGTGGTTCATATCTGGGACTCAGAGACACTCCTGAAACCTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtaggatgagcatgaagcatggagcttgtgatcttgcttgtttgtttgtt Alignment from GeneWise CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAA-CTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattacaggtcagctttttttcccggcttgacccaacccttttctttcagCCCCTGCAGCCTGTGGTTCATATCTGGGACTCAGAGACACTCCTGAAACCTGCAGGAGATTGGACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCAgtaggatgagcatgaagcatggagcttgtgatcttgcttgtttgtttgtt #### Eml3_ID2514_13 --> 2 - 0 Original Alignment agACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTG-TGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG tgcccctttgtctaaggtaagggcatgcctgagtcactttctgctttcagagACCTACACAATTGTGGCCCAGGCCCATGCTCATGAGGAGTCCATCTTTGCCCTACTGTCTCCGCCAGGATGGAACAGTGCTGAGTGGTGGTGGGAGGGACCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaagtgatgtgctggactctgggaagggatggggagacaaatggttagt Alignment from CESAR agACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTG-TGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG tgcccctttgtctaaggtaagggcatgcctgagtcactttctgctttcagagACCTACACAATTGTGGCCCAGGCCCATGCTCATGAGGAGTCCATCTTTGCCCTACTGTCTCCGCCAGGATGGAACAGTGCTGAGTGGTGGTGGGAGGGACCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaagtgatgtgctggactctgggaagggatggggagacaaatggttagt Alignment from Spaln_aa2Genome AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTG-TGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG tgcccctttgtctaaggtaagggcatgcctgagtcactttctgctttcagAGACCTACACAATTGTGGCCCAGGCCCATGCTCATGAGGAGTCCATCTTTGCCCTAcTGTCTCCGCCAGGATGGAACAGTGCTGAGTGGTGGTGGGAGGGACCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaagtgatgtgctggactctgggaagggatggggagacaaatggttagt Alignment from Spaln_nt2Genome AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTG-TGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG tgcccctttgtctaaggtaagggcatgcctgagtcactttctgctttcagAGACCTACACAATTGTGGCCCAGGCCCATGCTCATGAGGAGTCCATCTTTGCCCTACTGTCTCCGCCAGGATGGAACAGTGCTGAGTGGTGGTGGGAGGGACCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaagtgatgtgctggactctgggaagggatggggagacaaatggttagt Alignment from Pairagon AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTG-TGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG tgcccctttgtctaaggtaagggcatgcctgagtcactttctgctttcagAGACCTACACAATTGTGGCCCAGGCCCATGCTCATGAGGAGTCCATCTTTGCCCTACTGTCTCCGCCAGGATGGAACAGTGCTGAGTGGTGGTGGGAGGGACCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaagtgatgtgctggactctgggaagggatggggagacaaatggttagt Alignment from Exonerate_protein2genome AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTG-TGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG tgcccctttgtctaaggtaagggcatgcctgagtcactttctgctttcagAGACCTACACAATTGTGGCCCAGGCCCATGCTCATGAGGAGTCCATCTTTGCCCTACTGTCTCCGCCAGGATGGAACAGTGCTGAGTGGTGGTGGGAGGGACCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaagtgatgtgctggactctgggaagggatggggagacaaatggttagt Alignment from Exonerate_coding2genome AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTG-TGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG tgcccctttgtctaaggtaagggcatgcctgagtcactttctgctttcagAGACCTACACAATTGTGGCCCAGGCCCATGCTCATGAGGAGTCCATCTTTGCCCTACTGTCTCCGCCAGGATGGAACAGTGCTGAGTGGTGGTGGGAGGGACCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaagtgatgtgctggactctgggaagggatggggagacaaatggttagt Alignment from GeneWise AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCC-CTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG tgcccctttgtctaaggtaagggcatgcctgagtcactttctgctttcagAGACCTACACAATTGTGGCCCAGGCCCATGCTCATGAGGAGTCCATCTTTGCCCTACTGTCTCCGCCAGGATGGAACAGTGCTGAGTGGTGGTGGGAGGGACCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaagtgatgtgctggactctgggaagggatggggagacaaatggttagt #### Eml3_ID2516_15 --> 0 - 0 Original Alignment TTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAG-CTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG TTCTCCCCTGTTATCCAGgtatgtactgatgttttcatatccacttttagGGACACACTGACGAGCTCTGGGGACTGTGTACACATCCATCCCAGAATCGCTTCCTCACCTGTGGCCATGATAGGCAACCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGATCTAAAGgtttgaccagctgccctttatcggccttgctaaccatgttctgacacccc Alignment from CESAR TTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAG-CTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG TTCTCCCCTGTTATCCAGgtaaggactgatgttttcatatccacttttagGGACACACTGACGAGCTCTGGGGACTGTGTACACATCCATCCCAGAATCGCTTCCTCACCTGTGGCCATGATAGGCAACCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGATCTAAAGgtttgaccagctgccctttatcggccttgctaaccatgttctgacacccc Alignment from Spaln_aa2Genome TTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAG-CTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG TTCTCCCCTGTTATCCAGgtatgtactgatgttttcatatccacttttagGGACACACTGACGAGCTCTGGGGACTGTGTACACATCCATCCCAGAATCGCTTCCTCACCTGTGGCCATGATAGGCAAcCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGATCTAAAGgtttgaccagctgccctttatcggccttgctaaccatgttctgacacccc Alignment from Spaln_nt2Genome TTCTCCCCTGTTATCC--------------------------------AGGGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAGC-TCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG TTCTCCCCTGTTATCCAGGTATGTACTGATGTTTTCATATCCACTTTTAGGGACACACTGACGAGCTCTGGGGACTGTGTACACATCCATCCCAGAATCGCTTCCTCACCTGTGGCCATGATAGGCAACCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGATCTAAAGgtttgaccagctgccctttatcggccttgctaaccatgttctgacacccc Alignment from Pairagon TTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAG-CTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG TTCTCCCCTGTTATCCAGgtatgtactgatgttttcatatccacttttagGGACACACTGACGAGCTCTGGGGACTGTGTACACATCCATCCCAGAATCGCTTCCTCACCTGTGGCCATGATAGGCAACCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGATCTAAAGgtttgaccagctgccctttatcggccttgctaaccatgttctgacacccc Alignment from Exonerate_protein2genome TTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAG-CTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG TTCTCCCCTGTTATCCAGgtatgtactgatgttttcatatccacttttagGGACACACTGACGAGCTCTGGGGACTGTGTACACATCCATCCCAGAATCGCTTCCTCACCTGTGGCCATGATAGGCAACCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGATCTAAAGgtttgaccagctgccctttatcggccttgctaaccatgttctgacacccc Alignment from Exonerate_coding2genome TTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAG-CTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG TTCTCCCCTGTTATCCAGgtatgtactgatgttttcatatccacttttagGGACACACTGACGAGCTCTGGGGACTGTGTACACATCCATCCCAGAATCGCTTCCTCACCTGTGGCCATGATAGGCAACCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGATCTAAAGgtttgaccagctgccctttatcggccttgctaaccatgttctgacacccc Alignment from GeneWise TTCTCCCCTGTTATCCAG GGCCACACTGATGAGCTCTGGGGACTGTGTACACATCCGTCCCAGAATCGCTTCCTCACCTGTGGCCATGACCGGCAG-CTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGACCTAAAG TTCTCCCCTGTTATCCAGgtatgtactgatgttttcatatccacttttagGGACACACTGACGAGCTCTGGGGACTGTGTACACATCCATCCCAGAATCGCTTCCTCACCTGTGGCCATGATAGGCAACCTCTGCCTGTGGGATGGGGAAGGCCATGCACTGGCCTGGAGCATGGATCTAAAGgtttgaccagctgccctttatcggccttgctaaccatgttctgacacccc #### Fads1_ID2690_4 --> 0 - 0 Original Alignment GCTCAGGCAGGTTGGCTACAGCATGACTTT-GGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ggacccgagccaggccatggctgccctgcccaccatcttgtgtgctgcagGCTCAGGCAGGTTGGCTACAGCATGACTTTCGGGCACCTGTCAGTCTTTGGCACATCAACGTGGAATTACCTGCTGCATCATTTTGTGATTGGTCACCTGAAAgtgagcgagattattgtgttctcccaagcttcagtcactcatggttctca Alignment from CESAR GCTCAGGCAGGTTGGCTACAGCATGACTTT-GGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ggacccgagccaggccatggctgccctgcccaccatcttgtgtgctgcagGCTCAGGCAGGTTGGCTACAGCATGACTTTCGGGCACCTGTCAGTCTTTGGCACATCAACGTGGAATTACCTGCTGCATCATTTTGTGATTGGTCACCTGAAAgtgagcgagattattgtgttctcccaagcttcagtcactcatggttctca Alignment from Spaln_aa2Genome GCTCAGGCAGGTTGGCTACAGCATGAC-TTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ggacccgagccaggccatggctgccctgcccaccatcttgtgtgctgcagGCTCAGGCAGGTTGGCTACAGCATGACtTTCGGGCACCTGTCAGTCTTTGGCACATCAACGTGGAATTACCTGCTGCATCATTTTGTGATTGGTCACCTGAAAgtgagcgagattattgtgttctcccaagcttcagtcactcatggttctca Alignment from Spaln_nt2Genome GCTCAGGCAGGTTGGCTACAGCATGAC-TTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ggacccgagccaggccatggctgccctgcccaccatcttgtgtgctgcagGCTCAGGCAGGTTGGCTACAGCATGACTTTCGGGCACCTGTCAGTCTTTGGCACATCAACGTGGAATTACCTGCTGCATCATTTTGTGATTGGTCACCTGAAAgtgagcgagattattgtgttctcccaagcttcagtcactcatggttctca Alignment from Pairagon GCTCAGGCAGGTTGGCTACAGCATGACTTT-GGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ggacccgagccaggccatggctgccctgcccaccatcttgtgtgctgcagGCTCAGGCAGGTTGGCTACAGCATGACTTTCGGGCACCTGTCAGTCTTTGGCACATCAACGTGGAATTACCTGCTGCATCATTTTGTGATTGGTCACCTGAAAgtgagcgagattattgtgttctcccaagcttcagtcactcatggttctca Alignment from Exonerate_protein2genome GCTCAGGCAGGTTGGCTACAGCATGAC-TTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ggacccgagccaggccatggctgccctgcccaccatcttgtgtgctgcagGCTCAGGCAGGTTGGCTACAGCATGACTTTCGGGCACCTGTCAGTCTTTGGCACATCAACGTGGAATTACCTGCTGCATCATTTTGTGATTGGTCACCTGAAAgtgagcgagattattgtgttctcccaagcttcagtcactcatggttctca Alignment from Exonerate_coding2genome GCTCAGGCAGGTTGGCTACAGCATGAC-TTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ggacccgagccaggccatggctgccctgcccaccatcttgtgtgctgcagGCTCAGGCAGGTTGGCTACAGCATGACTTTCGGGCACCTGTCAGTCTTTGGCACATCAACGTGGAATTACCTGCTGCATCATTTTGTGATTGGTCACCTGAAAgtgagcgagattattgtgttctcccaagcttcagtcactcatggttctca Alignment from GeneWise GCTCAGGCAGGTTGGCTACAGCATGACTTT-GGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG ggacccgagccaggccatggctgccctgcccaccatcttgtgtgctgcagGCTCAGGCAGGTTGGCTACAGCATGACTTTCGGGCACCTGTCAGTCTTTGGCACATCAACGTGGAATTACCTGCTGCATCATTTTGTGATTGGTCACCTGAAAgtgagcgagattattgtgttctcccaagcttcagtcactcatggttctca #### Fads1_ID2695_9 --> 1 - 0 Original Alignment gTTCCTGGAAAGCAACTGGTTTGTG-TGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG ggacatcatggttagctttgcctcttatcgacttctctctggcttggcaggTTCCTGGAAAGCAACTGGTTTGTGCTGGGTGACACAGATGAACCATATCCCCATGCACATTGACCCGGACCGAAATGTGGACTGGGTCTCCACCCAGgtaagatacagtccttgtagcccgcccttggctactgaagagggtagatg Alignment from CESAR gTTCCTGGAAAGCAACTGGTTTGTG-TGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG ggacatcatggttagctttgcctcttatcgacttctctctggcttggcaggTTCCTGGAAAGCAACTGGTTTGTGCTGGGTGACACAGATGAACCATATCCCCATGCACATTGACCCGGACCGAAATGTGGACTGGGTCTCCACCCAGgtaagatacagtccttgtagcccgcccttggctactgaagagggtagatg Alignment from Spaln_aa2Genome GTTCCTGGAAAGCAACTGGTTTGTG-TGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG ggacatcatggttagctttgcctcttatcgacttctctctggcttggcagGTTCCTGGAAAGCAACTGGTTTGTGcTGGGTGACACAGATGAACCATATCCCCATGCACATTGACCCGGACCGAAATGTGGACTGGGTCTCCACCCAGgtaagatacagtccttgtagcccgcccttggctactgaagagggtagatg Alignment from Spaln_nt2Genome GTTCCTGGAAAGCAACTGGTTTGTG-TGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG ggacatcatggttagctttgcctcttatcgacttctctctggcttggcagGTTCCTGGAAAGCAACTGGTTTGTGCTGGGTGACACAGATGAACCATATCCCCATGCACATTGACCCGGACCGAAATGTGGACTGGGTCTCCACCCAGgtaagatacagtccttgtagcccgcccttggctactgaagagggtagatg Alignment from Pairagon GTTCCTGGAAAGCAACTGGTTTGTG-TGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG ggacatcatggttagctttgcctcttatcgacttctctctggcttggcagGTTCCTGGAAAGCAACTGGTTTGTGCTGGGTGACACAGATGAACCATATCCCCATGCACATTGACCCGGACCGAAATGTGGACTGGGTCTCCACCCAGgtaagatacagtccttgtagcccgcccttggctactgaagagggtagatg Alignment from Exonerate_protein2genome GTTCCTGGAAAGCAACTGGTTTGTG-TGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG ggacatcatggttagctttgcctcttatcgacttctctctggcttggcagGTTCCTGGAAAGCAACTGGTTTGTGCTGGGTGACACAGATGAACCATATCCCCATGCACATTGACCCGGACCGAAATGTGGACTGGGTCTCCACCCAGgtaagatacagtccttgtagcccgcccttggctactgaagagggtagatg Alignment from Exonerate_coding2genome GTTCCTGGAAAGCAACTGGTTTGTG-TGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG ggacatcatggttagctttgcctcttatcgacttctctctggcttggcagGTTCCTGGAAAGCAACTGGTTTGTGCTGGGTGACACAGATGAACCATATCCCCATGCACATTGACCCGGACCGAAATGTGGACTGGGTCTCCACCCAGgtaagatacagtccttgtagcccgcccttggctactgaagagggtagatg Alignment from GeneWise GTTCCTGGAAAGCAACTGGTTT-GTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG ggacatcatggttagctttgcctcttatcgacttctctctggcttggcagGTTCCTGGAAAGCAACTGGTTTGTGCTGGGTGACACAGATGAACCATATCCCCATGCACATTGACCCGGACCGAAATGTGGACTGGGTCTCCACCCAGgtaagatacagtccttgtagcccgcccttggctactgaagagggtagatg #### Fads3_ID2663_6 --> 0 - 1 Original Alignment TATGGCAAGAAGAAACGC-AGATACCTGCCCTACAACCACCAGCATCTATACTTCTTCCTGa cccatctcagcccagagagctgttctccccctaaccatccttcccttcagTATGGCAAGAAGAAACGTCAGATACCTGCCCTACAACCACCAGCATCTATACTTCTTCCTGagtagtgggtacctacaagcccctttgggtgggaacatggtggatcaagca Alignment from CESAR TATGGCAAGAAGAAACGC-AGATACCTGCCCTACAACCACCAGCATCTATACTTCTTCCTGa cccatctcagcccagagagctgttctccccctaaccatccttcccttcagTATGGCAAGAAGAAACGTCAGATACCTGCCCTACAACCACCAGCATCTATACTTCTTCCTGagtagtgggtacctacaagcccctttgggtgggaacatggtggatcaagca Alignment from Spaln_aa2Genome TATGGCAAGAAGAAACGC-AGATACCTGCCCTACAACCACCAGCATCTATACTTCTTCCTGA cccatctcagcccagagagctgttctccccctaaccatccttcccttcagTATGGCAAGAAGAAACGTcAGATACCTGCCCTACAACCACCAGCATCTATACTTCTTCCTGAgtagtgggtacctacaagcccctttgggtgggaacatggtggatcaagca Alignment from Spaln_nt2Genome TATGGCAAGAAGAAACG-CAGATACCTGCCCTACAACCACCAGCATCTATACTTCTTCCTGA cccatctcagcccagagagctgttctccccctaaccatccttcccttcagTATGGCAAGAAGAAACGTCAGATACCTGCCCTACAACCACCAGCATCTATACTTCTTCCTGAgtagtgggtacctacaagcccctttgggtgggaacatggtggatcaagca Alignment from Pairagon TATGGCAAGAAGAAACG-CAGATACCTGCCCTACAACCACCAGCATCTATACTTCTTCCTGA cccatctcagcccagagagctgttctccccctaaccatccttcccttcagTATGGCAAGAAGAAACGTCAGATACCTGCCCTACAACCACCAGCATCTATACTTCTTCCTGAgtagtgggtacctacaagcccctttgggtgggaacatggtggatcaagca Alignment from Exonerate_protein2genome TATGGCAAGAAGAAACGC-AGATACCTGCCCTACAACCACCAGCATCTATACTTCTTCCTGA cccatctcagcccagagagctgttctccccctaaccatccttcccttcagTATGGCAAGAAGAAACGTCAGATACCTGCCCTACAACCACCAGCATCTATACTTCTTCCTGAgtagtgggtacctacaagcccctttgggtgggaacatggtggatcaagca Alignment from Exonerate_coding2genome TATGGCAAGAAGAAACGC-AGATACCTGCCCTACAACCACCAGCATCTATACTTCTTCCTGA cccatctcagcccagagagctgttctccccctaaccatccttcccttcagTATGGCAAGAAGAAACGTCAGATACCTGCCCTACAACCACCAGCATCTATACTTCTTCCTGAgtagtgggtacctacaagcccctttgggtgggaacatggtggatcaagca Alignment from GeneWise TATGGCAAGAAGAAACGC-AGATACCTGCCCTACAACCACCAGCATCTATACTTCTTCCTGA cccatctcagcccagagagctgttctccccctaaccatccttcccttcagTATGGCAAGAAGAAACGTCAGATACCTGCCCTACAACCACCAGCATCTATACTTCTTCCTGAgtagtgggtacctacaagcccctttgggtgggaacatggtggatcaagca #### Fads3_ID2664_7 --> 2 - 0 Original Alignment ttGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAA-AATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG accacttggataacccactccccagtgccttagtgtgatcccacccacagttGGCCCTCCACTGCTCACATTGGTGAACTTTGAAGTTGAACAATCTGGCGTACATGCTGGTATGCATGCAGTGGACTgtgagtagatagtgctcaggacctcaggcatgaagctttctgggagaagg Alignment from CESAR ttGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAA-AATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG accacttggataacccactccccagtgccttagtgtgatcccacccacagttGGCCCTCCACTGCTCACATTGGTGAACTTTGAAGTTGAACAATCTGGCGTACATGCTGGTATGCATGCAGTGGACTgtgagtagatagtgctcaggacctcaggcatgaagctttctgggagaagg Alignment from Spaln_aa2Genome TTGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAA-AATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG accacttggataacccactccccagtgccttagtgtgatcccacccacagTTGGCCCTCCACTGCTCACATTGGTGAACTTTGAAGTTGAAcAATCTGGCGTACATGCTGGTATGCATGCAGTGGACTgtgagtagatagtgctcaggacctcaggcatgaagctttctgggagaagg Alignment from Spaln_nt2Genome TTGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAA-AATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG accacttggataacccactccccagtgccttagtgtgatcccacccacagTTGGCCCTCCACTGCTCACATTGGTGAACTTTGAAGTTGAACAATCTGGCGTACATGCTGGTATGCATGCAGTGGACTgtgagtagatagtgctcaggacctcaggcatgaagctttctgggagaagg Alignment from Pairagon TTGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAA-AATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG accacttggataacccactccccagtgccttagtgtgatcccacccacagTTGGCCCTCCACTGCTCACATTGGTGAACTTTGAAGTTGAACAATCTGGCGTACATGCTGGTATGCATGCAGTGGACTgtgagtagatagtgctcaggacctcaggcatgaagctttctgggagaagg Alignment from Exonerate_protein2genome TTGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAA-AATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG accacttggataacccactccccagtgccttagtgtgatcccacccacagTTGGCCCTCCACTGCTCACATTGGTGAACTTTGAAGTTGAACAATCTGGCGTACATGCTGGTATGCATGCAGTGGACTgtgagtagatagtgctcaggacctcaggcatgaagctttctgggagaagg Alignment from Exonerate_coding2genome TTGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAA-AATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG accacttggataacccactccccagtgccttagtgtgatcccacccacagTTGGCCCTCCACTGCTCACATTGGTGAACTTTGAAGTTGAACAATCTGGCGTACATGCTGGTATGCATGCAGTGGACTgtgagtagatagtgctcaggacctcaggcatgaagctttctgggagaagg Alignment from GeneWise TTGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTT-GAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG accacttggataacccactccccagtgccttagtgtgatcccacccacagTTGGCCCTCCACTGCTCACATTGGTGAACTTTGAAGTTGAACAATCTGGCGTACATGCTGGTATGCATGCAGTGGACTgtgagtagatagtgctcaggacctcaggcatgaagctttctgggagaagg #### Fads3_ID2667_10 --> 0 - 2 Original Alignment CTGGCAGCCACCTGCAATGTG-GAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACca gccaaggtagtaagcaagttctctcccttgatatttctctctcccttcagTTGGCAGCCACCTGCAATGTGCGAGTCATCACTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTTCAGATTGAGCACcagtaggagtggcctggagggcttacttgctgggtccggacctagggctcag Alignment from CESAR CTGGCAGCCACCTGCAATGTG-GAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACca gccaaggtagtaagcaagttctctcccttgatatttctctctcccttcagTTGGCAGCCACCTGCAATGTGCGAGTCATCACTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTTCAGATTGAGCACcagtaggagtggcctggagggcttacttgctgggtccggacctagggctcag Alignment from Spaln_aa2Genome CTGGCAGCCACCTGCAATGTG-GAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gccaaggtagtaagcaagttctctcccttgatatttctctctcccttcagTTGGCAGCCACCTGCAATGTGcGAGTCATCACTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTTCAGATTGAGCACCAgtaggagtggcctggagggcttacttgctgggtccggacctagggctcag Alignment from Spaln_nt2Genome CTGGCAGCCACCTGCAATGTG-GAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gccaaggtagtaagcaagttctctcccttgatatttctctctcccttcagTTGGCAGCCACCTGCAATGTGCGAGTCATCACTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTTCAGATTGAGCACCAgtaggagtggcctggagggcttacttgctgggtccggacctagggctcag Alignment from Pairagon CTGGCAGCCACCTGCAATGTG-GAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gccaaggtagtaagcaagttctctcccttgatatttctctctcccttcagTTGGCAGCCACCTGCAATGTGCGAGTCATCACTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTTCAGATTGAGCACCAgtaggagtggcctggagggcttacttgctgggtccggacctagggctcag Alignment from Exonerate_protein2genome CTGGCAGCCACCTGCAATGTG-GAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gccaaggtagtaagcaagttctctcccttgatatttctctctcccttcagTTGGCAGCCACCTGCAATGTGCGAGTCATCACTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTTCAGATTGAGCACCAgtaggagtggcctggagggcttacttgctgggtccggacctagggctcag Alignment from Exonerate_coding2genome CTGGCAGCCACCTGCAATGTG-GAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gccaaggtagtaagcaagttctctcccttgatatttctctctcccttcagTTGGCAGCCACCTGCAATGTGCGAGTCATCACTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTTCAGATTGAGCACCAgtaggagtggcctggagggcttacttgctgggtccggacctagggctcag Alignment from GeneWise CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gccaaggtagtaagcaagttctctcccttgatatttctctctcccttcagttggcagCCACCTGCAATGTGC------GAGTCATCACTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTTCAGATTGAGCACCAgtaggagtggcctggagggcttacttgctgggtccggacctagggctcag #### Fam160b1_ID12353_4 --> 0 - 0 Original Alignment TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATC-CGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcctgctgcaaacatttgaatatgttcctgactgttctcttcgttgcagTGCCCTCCAGGAATGAAACGGCAGGTTTTAGTACTCTATACCAAGCTTCTGGAACGAATCCCAGCAACCACTACTTCCACACGTCAATGTGCACAGGCCTGTGCAGgtaaggattctccctaagaataaaaatagtggagaaaaatatcataacat Alignment from CESAR TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATC-CGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcctgctgcaaacatttgaatatgttcctgactgttctcttcgttgcagTGCCCTCCAGGAATGAAACGGCAGGTTTTAGTACTCTATACCAAGCTTCTGGAACGAATCCCAGCAACCACTACTTCCACACGTCAATGTGCACAGGCCTGTGCAGgtaaggattctccctaagaataaaaatagtggagaaaaatatcataacat Alignment from Spaln_aa2Genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATC-CGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcctgctgcaaacatttgaatatgttcctgactgttctcttcgttgcagTGCCCTCCAGGAATGAAACGGCAGGTTTTAGTACTCTATACCAAGCTTCTGGAACGAATCcCAGCAACCACTACTTCCACACGTCAATGTGCACAGGCCTGTGCAGgtaaggattctccctaagaataaaaatagtggagaaaaatatcataacat Alignment from Spaln_nt2Genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCG-GCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcctgctgcaaacatttgaatatgttcctgactgttctcttcgttgcagTGCCCTCCAGGAATGAAACGGCAGGTTTTAGTACTCTATACCAAGCTTCTGGAACGAATCCCAGCAACCACTACTTCCACACGTCAATGTGCACAGGCCTGTGCAGgtaaggattctccctaagaataaaaatagtggagaaaaatatcataacat Alignment from Pairagon TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAAT-CCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcctgctgcaaacatttgaatatgttcctgactgttctcttcgttgcagTGCCCTCCAGGAATGAAACGGCAGGTTTTAGTACTCTATACCAAGCTTCTGGAACGAATCCCAGCAACCACTACTTCCACACGTCAATGTGCACAGGCCTGTGCAGgtaaggattctccctaagaataaaaatagtggagaaaaatatcataacat Alignment from Exonerate_protein2genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATC-CGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcctgctgcaaacatttgaatatgttcctgactgttctcttcgttgcagTGCCCTCCAGGAATGAAACGGCAGGTTTTAGTACTCTATACCAAGCTTCTGGAACGAATCCCAGCAACCACTACTTCCACACGTCAATGTGCACAGGCCTGTGCAGgtaaggattctccctaagaataaaaatagtggagaaaaatatcataacat Alignment from Exonerate_coding2genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATC-CGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcctgctgcaaacatttgaatatgttcctgactgttctcttcgttgcagTGCCCTCCAGGAATGAAACGGCAGGTTTTAGTACTCTATACCAAGCTTCTGGAACGAATCCCAGCAACCACTACTTCCACACGTCAATGTGCACAGGCCTGTGCAGgtaaggattctccctaagaataaaaatagtggagaaaaatatcataacat Alignment from GeneWise TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATC-CGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcctgctgcaaacatttgaatatgttcctgactgttctcttcgttgcagTGCCCTCCAGGAATGAAACGGCAGGTTTTAGTACTCTATACCAAGCTTCTGGAACGAATCCCAGCAACCACTACTTCCACACGTCAATGTGCACAGGCCTGTGCAGgtaaggattctccctaagaataaaaatagtggagaaaaatatcataacat #### Fam160b1_ID12358_9 --> 0 - 2 Original Alignment ACTGCTGCTGTTGCTCTCGCCAAAGCC-ATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGac atagttcattatctttaagccaagtccacattttcttattctcctgtcagACTGCTGCTGTTGCTCTCGCCAAAGCCCATCCACGAAAGGTTCTTTGTTGGTGTTATGGAACCCCAGCTGATGCAGacgtatgtgtcctctcactttgcagaactaaccatgctgtatcccatctgcc Alignment from CESAR ACTGCTGCTGTTGCTCTCGCCAAAGCC-ATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGac atagttcattatctttaagccaagtccacattttcttattctcctgtcagACTGCTGCTGTTGCTCTCGCCAAAGCCCATCCACGAAAGGTTCTTTGTTGGTGTTATGGAACCCCAGCTGATGCAGacgtatgtgtcctctcactttgcagaactaaccatgctgtaatcttcatttc Alignment from Spaln_aa2Genome ACTGCTGCTGTTGCTCTCGCCAAAGCC-ATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC atagttcattatctttaagccaagtccacattttcttattctcctgtcagACTGCTGCTGTTGCTCTCGCCAAAGCCcATCCACGAAAGGTTCTTTGTTGGTGTTATGGAACCCCAGCTGATGCAGACgtatgtgtcctctcactttgcagaactaaccatgctgtatcccatctgcc Alignment from Spaln_nt2Genome ACTGCTGCTGTTGCTCTCGCC-AAAGCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC atagttcattatctttaagccaagtccacattttcttattctcctgtcagACTGCTGCTGTTGCTCTCGCCAAAGCCCATCCACGAAAGGTTCTTTGTTGGTGTTATGGAACCCCAGCTGATGCAGACgtatgtgtcctctcactttgcagaactaaccatgctgtatcccatctgcc Alignment from Pairagon ACTGCTGCTGTTGCTCTCGCCAAAG-CCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC atagttcattatctttaagccaagtccacattttcttattctcctgtcagACTGCTGCTGTTGCTCTCGCCAAAGCCCATCCACGAAAGGTTCTTTGTTGGTGTTATGGAACCCCAGCTGATGCAGACgtatgtgtcctctcactttgcagaactaaccatgctgtatcccatctgcc Alignment from Exonerate_protein2genome ACTGCTGCTGTTGCTCTCGCCAAAGCC-ATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC atagttcattatctttaagccaagtccacattttcttattctcctgtcagACTGCTGCTGTTGCTCTCGCCAAAGCCCATCCACGAAAGGTTCTTTGTTGGTGTTATGGAACCCCAGCTGATGCAGACgtatgtgtcctctcactttgcagaactaaccatgctgtatcccatctgcc Alignment from Exonerate_coding2genome ACTGCTGCTGTTGCTCTCGCCAAAGCC-ATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC atagttcattatctttaagccaagtccacattttcttattctcctgtcagACTGCTGCTGTTGCTCTCGCCAAAGCCCATCCACGAAAGGTTCTTTGTTGGTGTTATGGAACCCCAGCTGATGCAGACgtatgtgtcctctcactttgcagaactaaccatgctgtatcccatctgcc Alignment from GeneWise ACTGCTGCTGTTGCTCTCGCCAAA-GCCATCCACGAAAGGTTCTTTGTTGGTGTCATGGAACCCCAGCTGATGCAGAC atagttcattatctttaagccaagtccacattttcttattctcctgtcagACTGCTGCTGTTGCTCTCGCCAAAGCCCATCCACGAAAGGTTCTTTGTTGGTGTTATGGAACCCCAGCTGATGCAGACgtatgtgtcctctcactttgcagaactaaccatgctgtatcccatctgcc #### Fam160b1_ID12359_10 --> 1 - 0 Original Alignment cTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGC-GATCACATATCTGATGAG ctcactttgcagaactaaccatgctgtaatcttcatttctctttgcctagcTCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATCGTCCGGCAAGTGACCTCGGACGTCCTGCTTCAGGAAATGGTCGTCTTCATACTCGCAGAACAGAGGGAGCCAGAAACTTTGTCAGAGATTAGCAGACATCCACTAAGACATAGGTTAATTGAACATTGTCGATCACATCTCTGATGAGgtaagacacgttcaaactgcactggacttatagccttggaaatgtgggtt Alignment from CESAR cTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGC-GATCACATATCTGATGAG ctcactttgcagaactaaccatgctgtaatcttcatttctctttgcctagcTCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATCGTCCGGCAAGTGACCTCGGACGTCCTGCTTCAGGAAATGGTCGTCTTCATACTCGCAGAACAGAGGGAGCCAGAAACTTTGTCAGAGATTAGCAGACATCCACTAAGACATAGGTTAATTGAACATTGTCGATCACATCTCTGATGAGgtaagacacgttcaaactgcactggacttatagccttggaaatgtgggtt Alignment from Spaln_aa2Genome CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGC-GATCACATATCTGATGAG ctcactttgcagaactaaccatgctgtaatcttcatttctctttgcctagCTCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATCGTCCGGCAAGTGACCTCGGACGTCCTGCTTCAGGAAATGGTCGTCTTCATACTCGCAGAACAGAGGGAGCCAGAAACTTTGTCAGAGATTAGCAGACATCCACTAAGACATAGGTTAATTGAACATTGTcGATCACATCTCTGATGAGgtaagacacgttcaaactgcactggacttatagccttggaaatgtgggtt Alignment from Spaln_nt2Genome CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTG-CGATCACATATCTGATGAG ctcactttgcagaactaaccatgctgtaatcttcatttctctttgcctagCTCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATCGTCCGGCAAGTGACCTCGGACGTCCTGCTTCAGGAAATGGTCGTCTTCATACTCGCAGAACAGAGGGAGCCAGAAACTTTGTCAGAGATTAGCAGACATCCACTAAGACATAGGTTAATTGAACATTGTCGATCACATCTCTGATGAGgtaagacacgttcaaactgcactggacttatagccttggaaatgtgggtt Alignment from Pairagon CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTG-CGATCACATATCTGATGAG ctcactttgcagaactaaccatgctgtaatcttcatttctctttgcctagCTCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATCGTCCGGCAAGTGACCTCGGACGTCCTGCTTCAGGAAATGGTCGTCTTCATACTCGCAGAACAGAGGGAGCCAGAAACTTTGTCAGAGATTAGCAGACATCCACTAAGACATAGGTTAATTGAACATTGTCGATCACATCTCTGATGAGgtaagacacgttcaaactgcactggacttatagccttggaaatgtgggtt Alignment from Exonerate_protein2genome CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGC-GATCACATATCTGATGAG ctcactttgcagaactaaccatgctgtaatcttcatttctctttgcctagCTCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATCGTCCGGCAAGTGACCTCGGACGTCCTGCTTCAGGAAATGGTCGTCTTCATACTCGCAGAACAGAGGGAGCCAGAAACTTTGTCAGAGATTAGCAGACATCCACTAAGACATAGGTTAATTGAACATTGTCGATCACATCTCTGATGAGgtaagacacgttcaaactgcactggacttatagccttggaaatgtgggtt Alignment from Exonerate_coding2genome CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGC-GATCACATATCTGATGAG ctcactttgcagaactaaccatgctgtaatcttcatttctctttgcctagCTCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATCGTCCGGCAAGTGACCTCGGACGTCCTGCTTCAGGAAATGGTCGTCTTCATACTCGCAGAACAGAGGGAGCCAGAAACTTTGTCAGAGATTAGCAGACATCCACTAAGACATAGGTTAATTGAACATTGTCGATCACATCTCTGATGAGgtaagacacgttcaaactgcactggacttatagccttggaaatgtgggtt Alignment from GeneWise CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGC-GATCACATATCTGATGAG ctcactttgcagaactaaccatgctgtaatcttcatttctctttgcctagCTCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACACCGTATCGTCCGGCAAGTGACCTCGGACGTCCTGCTTCAGGAAATGGTCGTCTTCATACTCGCAGAACAGAGGGAGCCAGAAACTTTGTCAGAGATTAGCAGACATCCACTAAGACATAGGTTAATTGAACATTGTCGATCACATCTCTGATGAGgtaagacacgttcaaactgcactggacttatagccttggaaatgtgggtt #### Fas_ID6925_6 --> 2 - 1 Original Alignment gtCCCAGAAATCGCCTATGGTTGTTGACCATC-CTTGTTTTGTTAATTCCACTTg cttacttaaaaaaattactcaattcccttcaccatctctctgtctcccaggtCCCAGAAATTGCCTATGGTTGTTGACCATCCCTTGTTTTGTTGATTCCACTTggtaagacctaagtttgttcaagatgaatattaaagtgacgtgaggagtag Alignment from CESAR gtCCCAGAAATCGCCTATGGTTGTTGACCATC-CTTGTTTTGTTAATTCCACTTg cttacttaaaaaaattactcaattcccttcaccatctctctgtctcccaggtCCCAGAAATTGCCTATGGTTGTTGACCATCCCTTGTTTTGTTGATTCCACTTggtaagacctaagtttgttcaagatgaatattaaagtgacgtgaggagtag Alignment from Spaln_aa2Genome GTCCCAGAAATCGCCTATGGTTGTTGACCATC-CTTGTTTTGTTAATTCCACTTG cttacttaaaaaaattactcaattcccttcaccatctctctgtctcccagGTCCCAGAAATTGCCTATGGTTGTTGACCATCcCTTGTTTTGTTGATTCCACTTGgtaagacctaagtttgttcaagatgaatattaaagtgacgtgaggagtag Alignment from Spaln_nt2Genome GTCCCAGAAATCGCCTATGGTTGTTGACCATCCT-TGTTTTGTTAATTCCACTTG cttacttaaaaaaattactcaattcccttcaccatctctctgtctcccagGTCCCAGAAATTGCCTATGGTTGTTGACCATCCCTTGTTTTGTTGATTCCACTTGgtaagacctaagtttgttcaagatgaatattaaagtgacgtgaggagtag Alignment from Pairagon GTCCCAGAAATCGCCTATGGTTGTTGACCAT-CCTTGTTTTGTTAATTCCACTTG cttacttaaaaaaattactcaattcccttcaccatctctctgtctcccagGTCCCAGAAATTGCCTATGGTTGTTGACCATCCCTTGTTTTGTTGATTCCACTTGgtaagacctaagtttgttcaagatgaatattaaagtgacgtgaggagtag Alignment from Exonerate_protein2genome GTCCCAGAAATCGCCTATGGTTGTTGACCATC-CTTGTTTTGTTAATTCCACTTG cttacttaaaaaaattactcaattcccttcaccatctctctgtctcccagGTCCCAGAAATTGCCTATGGTTGTTGACCATCCCTTGTTTTGTTGATTCCACTTGgtaagacctaagtttgttcaagatgaatattaaagtgacgtgaggagtag Alignment from Exonerate_coding2genome GTCCCAGAAATCGCCTATGGTTGTTGACCATC-CTTGTTTTGTTAATTCCACTTG cttacttaaaaaaattactcaattcccttcaccatctctctgtctcccagGTCCCAGAAATTGCCTATGGTTGTTGACCATCCCTTGTTTTGTTGATTCCACTTGgtaagacctaagtttgttcaagatgaatattaaagtgacgtgaggagtag Alignment from GeneWise GTCCCAGAAATCGCCTATGGTTGTTGACCATC-CTTGTTTTGTTAATTCCACTTG cttacttaaaaaaattactcaattcccttcaccatctctctgtctcccagGTCCCAGAAATTGCCTATGGTTGTTGACCATCCCTTGTTTTGTTGATTCCACTTGgtaagacctaagtttgttcaagatgaatattaaagtgacgtgaggagtag #### Fbxl15_ID9850_2 --> 1 - 0 Original Alignment gCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGG-GCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acccacacgcaacaggggcttgggggtgtgaattctgtctcttcatgtagaCTCCTTGACCTGCCTTGGGAAGATGTGCTGCTCCCACATGTCCTGAACTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTCAGTCGTGCCTTCGGGCGCACTTATTCAGCTGCACTTGGCAAGGCTGCGCCGCTTTGATGCCGCTCAGgtaccctggggcttggggctgccctcgtccctggttggtgccattgtcac Alignment from CESAR gCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGG-GCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acccacacgcaacaggggcttgggggtgtgaattctgtctcttcatgtagaCTCCTTGACCTGCCTTGGGAAGATGTGCTGCTCCCACATGTCCTGAACTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTCAGTCGTGCCTTCGGGCGCACTTATTCAGCTGCACTTGGCAAGGCTGCGCCGCTTTGATGCCGCTCAGgtaccctggggcttggggctgccctcgtccctggttggtgccattgtcac Alignment from Spaln_aa2Genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGG-GCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acccacacgcaacaggggcttgggggtgtgaattctgtctcttcatgtagACTCCTTGACCTGCCTTGGGAAGATGTGCTGCTCCCACATGTCCTGAACTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTCAGTCGTGCCTTCGGGcGCACTTATTCAGCTGCACTTGGCAAGGCTGCGCCGCTTTGATGCCGCTCAGgtaccctggggcttggggctgccctcgtccctggttggtgccattgtcac Alignment from Spaln_nt2Genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGG-GCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acccacacgcaacaggggcttgggggtgtgaattctgtctcttcatgtagACTCCTTGACCTGCCTTGGGAAGATGTGCTGCTCCCACATGTCCTGAACTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTCAGTCGTGCCTTCGGGCGCACTTATTCAGCTGCACTTGGCAAGGCTGCGCCGCTTTGATGCCGCTCAGgtaccctggggcttggggctgccctcgtccctggttggtgccattgtcac Alignment from Pairagon GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGG-GCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acccacacgcaacaggggcttgggggtgtgaattctgtctcttcatgtagACTCCTTGACCTGCCTTGGGAAGATGTGCTGCTCCCACATGTCCTGAACTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTCAGTCGTGCCTTCGGGCGCACTTATTCAGCTGCACTTGGCAAGGCTGCGCCGCTTTGATGCCGCTCAGgtaccctggggcttggggctgccctcgtccctggttggtgccattgtcac Alignment from Exonerate_protein2genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTC-CGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acccacacgcaacaggggcttgggggtgtgaattctgtctcttcatgtagACTCCTTGACCTGCCTTGGGAAGATGTGCTGCTCCCACATGTCCTGAACTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTCAGTCGTGCCTTCGGGCGCACTTATTCAGCTGCACTTGGCAAGGCTGCGCCGCTTTGATGCCGCTCAGgtaccctggggcttggggctgccctcgtccctggttggtgccattgtcac Alignment from Exonerate_coding2genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTC-CGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acccacacgcaacaggggcttgggggtgtgaattctgtctcttcatgtagACTCCTTGACCTGCCTTGGGAAGATGTGCTGCTCCCACATGTCCTGAACTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTCAGTCGTGCCTTCGGGCGCACTTATTCAGCTGCACTTGGCAAGGCTGCGCCGCTTTGATGCCGCTCAGgtaccctggggcttggggctgccctcgtccctggttggtgccattgtcac Alignment from GeneWise GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTC-CGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGCTTCGACGCCGCTCAG acccacacgcaacaggggcttgggggtgtgaattctgtctcttcatgtagACTCCTTGACCTGCCTTGGGAAGATGTGCTGCTCCCACATGTCCTGAACTGGGTCCCACTGCGTCAACTGCTCCGGCTGCAGCGGGTCAGTCGTGCCTTCGGGCGCACTTATTCAGCTGCACTTGGCAAGGCTGCGCCGCTTTGATGCCGCTCAGgtaccctggggcttggggctgccctcgtccctggttggtgccattgtcac #### Fibp_ID1005_2 --> 2 - 2 Original Alignment tgAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTT-GAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGag tggaacacccggggggcctctagggtcttcttgaccttacttcgcaacagtgAATGATGCAGTGGCTCTGCGAGTACGTTCTGGAATTTTAGAGCAGACTGGAGCCACCACAGGAGTGCTGCAGAGTGACACCATGGACCACTACCGCACCTTTCGCATGCTTCGAGCGACTGCTACATGCACCCCCAAAGCTCCTGCATCAGCTCATCTTCCAGGTTCCTCCCTCCCGCCAGACGCTCCTCATCGAGaggtgagtaacagggtggtgggtggggtgggtactggtaggggtgtcagtca Alignment from CESAR tgAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTT-GAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGag tggaacacccggggggcctctagggtcttcttgaccttacttcgcaacagtgAATGATGCAGTGGCTCTGCGAGTACGTTCTGGAATTTTAGAGCAGACTGGAGCCACCACAGGAGTGCTGCAGAGTGACACCATGGACCACTACCGCACCTTTCGCATGCTTCGAGCGACTGCTACATGCACCCCCAAAGCTCCTGCATCAGCTCATCTTCCAGGTTCCTCCCTCCCGCCAGACGCTCCTCATCGAGaggtgagtaacagggtggtgggtggggtgggtactggtaggggtgtcagtca Alignment from Spaln_aa2Genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTT-GAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG tggaacacccggggggcctctagggtcttcttgaccttacttcgcaacagTGAATGATGCAGTGGCTCTGCGAGTACGTTCTGGAATTTTAGAGCAGACTGGAGCCACCACAGGAGTGCTGCAGAGTGACACCATGGACCACTACCGCACCTTTCGCATGCTTcGAGCGACTGCTACATGCACCCCCAAAGCTCCTGCATCAGCTCATCTTCCAGGTTCCTCCCTCCCGCCAGACGCTCCTCATCGAGAGgtgagtaacagggtggtgggtggggtgggtactggtaggggtgtcagtca Alignment from Spaln_nt2Genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTT-GAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG tggaacacccggggggcctctagggtcttcttgaccttacttcgcaacagTGAATGATGCAGTGGCTCTGCGAGTACGTTCTGGAATTTTAGAGCAGACTGGAGCCACCACAGGAGTGCTGCAGAGTGACACCATGGACCACTACCGCACCTTTCGCATGCTTCGAGCGACTGCTACATGCACCCCCAAAGCTCCTGCATCAGCTCATCTTCCAGGTTCCTCCCTCCCGCCAGACGCTCCTCATCGAGAGgtgagtaacagggtggtgggtggggtgggtactggtaggggtgtcagtca Alignment from Pairagon TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTT-GAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG tggaacacccggggggcctctagggtcttcttgaccttacttcgcaacagTGAATGATGCAGTGGCTCTGCGAGTACGTTCTGGAATTTTAGAGCAGACTGGAGCCACCACAGGAGTGCTGCAGAGTGACACCATGGACCACTACCGCACCTTTCGCATGCTTCGAGCGACTGCTACATGCACCCCCAAAGCTCCTGCATCAGCTCATCTTCCAGGTTCCTCCCTCCCGCCAGACGCTCCTCATCGAGAGgtgagtaacagggtggtgggtggggtgggtactggtaggggtgtcagtca Alignment from Exonerate_protein2genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTT-GAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG tggaacacccggggggcctctagggtcttcttgaccttacttcgcaacagTGAATGATGCAGTGGCTCTGCGAGTACGTTCTGGAATTTTAGAGCAGACTGGAGCCACCACAGGAGTGCTGCAGAGTGACACCATGGACCACTACCGCACCTTTCGCATGCTTCGAGCGACTGCTACATGCACCCCCAAAGCTCCTGCATCAGCTCATCTTCCAGGTTCCTCCCTCCCGCCAGACGCTCCTCATCGAGAGgtgagtaacagggtggtgggtggggtgggtactggtaggggtgtcagtca Alignment from Exonerate_coding2genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTT-GAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG tggaacacccggggggcctctagggtcttcttgaccttacttcgcaacagTGAATGATGCAGTGGCTCTGCGAGTACGTTCTGGAATTTTAGAGCAGACTGGAGCCACCACAGGAGTGCTGCAGAGTGACACCATGGACCACTACCGCACCTTTCGCATGCTTCGAGCGACTGCTACATGCACCCCCAAAGCTCCTGCATCAGCTCATCTTCCAGGTTCCTCCCTCCCGCCAGACGCTCCTCATCGAGAGgtgagtaacagggtggtgggtggggtgggtactggtaggggtgtcagtca Alignment from GeneWise TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATG-CTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGACAGACACTCCTCATCGAGAG tggaacacccggggggcctctagggtcttcttgaccttacttcgcaacagTGAATGATGCAGTGGCTCTGCGAGTACGTTCTGGAATTTTAGAGCAGACTGGAGCCACCACAGGAGTGCTGCAGAGTGACACCATGGACCACTACCGCACCTTTCGCATGCTTCGAGCGACTGCTACATGCACCCCCAAAGCTCCTGCATCAGCTCATCTTCCAGGTTCCTCCCTCCCGCCAGACGCTCCTCATCGAGAGgtgagtaacagggtggtgggtggggtgggtactggtaggggtgtcagtca #### Fibp_ID1010_7 --> 1 - 0 Original Alignment cCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGT-GTCTTCTCTGAGATGGAAACCAACTTCAAG cataggatacaacacacttagtttatagcaatttcccatttcttctctagcCTGGTGTGCACTGCCCTCCGGGGAAAGCTCGGTCGTCTTCTCTGAGATGGAAACCAACTTCAAGgtatagtgacctgtcagtcagacccctctgcctaaagtatcaagtggctt Alignment from CESAR cCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGT-GTCTTCTCTGAGATGGAAACCAACTTCAAG cataggatacaacacacttagtttatagcaatttcccatttcttctctagcCTGGTGTGCACTGCCCTCCGGGGAAAGCTCGGTCGTCTTCTCTGAGATGGAAACCAACTTCAAGgtatagtgacctgtcagtcagacccctctgcctaaagtatcaagtggctt Alignment from Spaln_aa2Genome CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGT-GTCTTCTCTGAGATGGAAACCAACTTCAAG cataggatacaacacacttagtttatagcaatttcccatttcttctctagCCTGGTGTGCACTGCCCTCCGGGGAAAGCTCGGTcGTCTTCTCTGAGATGGAAACCAACTTCAAGgtatagtgacctgtcagtcagacccctctgcctaaagtatcaagtggctt Alignment from Spaln_nt2Genome CCTGGTGTGCACTGCCCTCCGGGGAAAGCTG-GGTGTCTTCTCTGAGATGGAAACCAACTTCAAG cataggatacaacacacttagtttatagcaatttcccatttcttctctagCCTGGTGTGCACTGCCCTCCGGGGAAAGCTCGGTCGTCTTCTCTGAGATGGAAACCAACTTCAAGgtatagtgacctgtcagtcagacccctctgcctaaagtatcaagtggctt Alignment from Pairagon CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGT-GTCTTCTCTGAGATGGAAACCAACTTCAAG cataggatacaacacacttagtttatagcaatttcccatttcttctctagCCTGGTGTGCACTGCCCTCCGGGGAAAGCTCGGTCGTCTTCTCTGAGATGGAAACCAACTTCAAGgtatagtgacctgtcagtcagacccctctgcctaaagtatcaagtggctt Alignment from Exonerate_protein2genome CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGT-GTCTTCTCTGAGATGGAAACCAACTTCAAG cataggatacaacacacttagtttatagcaatttcccatttcttctctagCCTGGTGTGCACTGCCCTCCGGGGAAAGCTCGGTCGTCTTCTCTGAGATGGAAACCAACTTCAAGgtatagtgacctgtcagtcagacccctctgcctaaagtatcaagtggctt Alignment from Exonerate_coding2genome CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGT-GTCTTCTCTGAGATGGAAACCAACTTCAAG cataggatacaacacacttagtttatagcaatttcccatttcttctctagCCTGGTGTGCACTGCCCTCCGGGGAAAGCTCGGTCGTCTTCTCTGAGATGGAAACCAACTTCAAGgtatagtgacctgtcagtcagacccctctgcctaaagtatcaagtggctt Alignment from GeneWise CCTGGTGTGCACTGCCCTCCGGGGAAAGCTGGGT-GTCTTCTCTGAGATGGAAACCAACTTCAAG cataggatacaacacacttagtttatagcaatttcccatttcttctctagCCTGGTGTGCACTGCCCTCCGGGGAAAGCTCGGTCGTCTTCTCTGAGATGGAAACCAACTTCAAGgtatagtgacctgtcagtcagacccctctgcctaaagtatcaagtggctt #### Fibp_ID1011_8 --> 0 - 0 Original Alignment AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAG-GATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccccacatctaagagcaggagacagattcctttaatttttggtattagAATCTGTCTAGGGGTCTGGTGAATGTGGCTGCCAAGCTGACTCACAATAAGCGATGTCAGAGACCTATTTGTGGACCTTGTGGAGAAGgtagaaactgcttagatgcaggacagcctggggaccagggacagggacag Alignment from CESAR AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAG-GATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccccacatctaagagcaggagacagattcctttaatttttggtattagAATCTGTCTAGGGGTCTGGTGAATGTGGCTGCCAAGCTGACTCACAATAAGCGATGTCAGAGACCTATTTGTGGACCTTGTGGAGAAGgtagaaactgcttagatgcaggacagcctggggaccagggacagggacag Alignment from Spaln_aa2Genome AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAG-GATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccccacatctaagagcaggagacagattcctttaatttttggtattagAATCTGTCTAGGGGTCTGGTGAATGTGGCTGCCAAGCTGACTCACAATAAGcGATGTCAGAGACCTATTTGTGGACCTTGTGGAGAAGgtagaaactgcttagatgcaggacagcctggggaccagggacagggacag Alignment from Spaln_nt2Genome AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAG-GATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccccacatctaagagcaggagacagattcctttaatttttggtattagAATCTGTCTAGGGGTCTGGTGAATGTGGCTGCCAAGCTGACTCACAATAAGCGATGTCAGAGACCTATTTGTGGACCTTGTGGAGAAGgtagaaactgcttagatgcaggacagcctggggaccagggacagggacag Alignment from Pairagon AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAG-GATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccccacatctaagagcaggagacagattcctttaatttttggtattagAATCTGTCTAGGGGTCTGGTGAATGTGGCTGCCAAGCTGACTCACAATAAGCGATGTCAGAGACCTATTTGTGGACCTTGTGGAGAAGgtagaaactgcttagatgcaggacagcctggggaccagggacagggacag Alignment from Exonerate_protein2genome AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAG-GATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccccacatctaagagcaggagacagattcctttaatttttggtattagAATCTGTCTAGGGGTCTGGTGAATGTGGCTGCCAAGCTGACTCACAATAAGCGATGTCAGAGACCTATTTGTGGACCTTGTGGAGAAGgtagaaactgcttagatgcaggacagcctggggaccagggacagggacag Alignment from Exonerate_coding2genome AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAG-GATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccccacatctaagagcaggagacagattcctttaatttttggtattagAATCTGTCTAGGGGTCTGGTGAATGTGGCTGCCAAGCTGACTCACAATAAGCGATGTCAGAGACCTATTTGTGGACCTTGTGGAGAAGgtagaaactgcttagatgcaggacagcctggggaccagggacagggacag Alignment from GeneWise AATCTGTCTCGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAAT-AAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccccacatctaagagcaggagacagattcctttaatttttggtattagAATCTGTCTAGGGGTCTGGTGAATGTGGCTGCCAAGCTGACTCACAATAAGCGATGTCAGAGACCTATTTGTGGACCTTGTGGAGAAGgtagaaactgcttagatgcaggacagcctggggaccagggacagggacag #### Fkbp2_ID1946_3 --> 1 - 1 Original Alignment gATGTGTGAAGGGGAAAAGCGG-AAGTTGGTGATCCCATCCGAGCTGg tgggccatgggtctgggcatttcaggtgctccccacaactccccatgcaggATGTGTGAAGGAGAAAGGCGGCAAGTTGGTGATCCCATCAGAGCTGggtaactggacatggtggttgggaggtaatgggatctggagagggcttaaa Alignment from CESAR gATGTGTGAAGGGGAAAAGCGG-AAGTTGGTGATCCCATCCGAGCTGg tgggccatgggtctgggcatttcaggtgctccccacaactccccatgcaggATGTGTGAAGGAGAAAGGCGGCAAGTTGGTGATCCCATCAGAGCTGggtaactggacatggtggttgggaggtaatgggatctggagagggcttaaa Alignment from Spaln_aa2Genome GATGTGTGAAGGGGAAAAGCGG-AAGTTGGTGATCCCATCCGAGCTGG tgggccatgggtctgggcatttcaggtgctccccacaactccccatgcagGATGTGTGAAGGAGAAAGGCGGcAAGTTGGTGATCCCATCAGAGCTGGgtaactggacatggtggttgggaggtaatgggatctggagagggcttaaa Alignment from Spaln_nt2Genome GATGTGTGAAGGGGAAAAGCGGA-AGTTGGTGATCCCATCCGAGCTGG tgggccatgggtctgggcatttcaggtgctccccacaactccccatgcagGATGTGTGAAGGAGAAAGGCGGCAAGTTGGTGATCCCATCAGAGCTGGgtaactggacatggtggttgggaggtaatgggatctggagagggcttaaa Alignment from Pairagon GATGTGTGAAGGGGAAAAGCGG-AAGTTGGTGATCCCATCCGAGCTGG tgggccatgggtctgggcatttcaggtgctccccacaactccccatgcagGATGTGTGAAGGAGAAAGGCGGCAAGTTGGTGATCCCATCAGAGCTGGgtaactggacatggtggttgggaggtaatgggatctggagagggcttaaa Alignment from Exonerate_protein2genome GATGTGTGAAGGGGAAAAGCGG-AAGTTGGTGATCCCATCCGAGCTGG tgggccatgggtctgggcatttcaggtgctccccacaactccccatgcagGATGTGTGAAGGAGAAAGGCGGCAAGTTGGTGATCCCATCAGAGCTGGgtaactggacatggtggttgggaggtaatgggatctggagagggcttaaa Alignment from Exonerate_coding2genome tgggccatgggtctgggcatttcaggtgctccccacaactccccatgcaggatgtgtgaaggagaaaggcggcaagttggtgatcccatcagagctgggtaactggacatggtggttgggaggtaatgggatctggagagggcttaaa Alignment from GeneWise GATGTGTGAAGGGGAAAAGCGG-AAGTTGGTGATCCCATCCGAGCTGG tgggccatgggtctgggcatttcaggtgctccccacaactccccatgcagGATGTGTGAAGGAGAAAGGCGGCAAGTTGGTGATCCCATCAGAGCTGGgtaactggacatggtggttgggaggtaatgggatctggagagggcttaaa #### Fkbp2_ID1947_2 --> 0 - 2 Original Alignment GGAAAGCTAGAAGATGGGACG-GAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGgg tggagcaacctctccttactagtttttccatttccttttcccccacaaagGGAAAGCTAGAAGATGGGACACGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGgggtgaggctggtctgtggtacatgttgtagtgagtgctacagcaagtgagc Alignment from CESAR GGAAAGCTAGAAGATGGGACG-GAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGgg tggagcaacctctccttactagtttttccatttccttttcccccacaaagGGAAAGCTAGAAGATGGGACACGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGgggtgaggctggtctgtggtacatgttgtagtgagtgctacagcaagtgagc Alignment from Spaln_aa2Genome GGAAAGCTAGAAGATGGGACG-GAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG tggagcaacctctccttactagtttttccatttccttttcccccacaaagGGAAAGCTAGAAGATGGGACAcGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGGgtgaggctggtctgtggtacatgttgtagtgagtgctacagcaagtgagc Alignment from Spaln_nt2Genome GGAAAGCTAGAAGATGGGACG-GAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG tggagcaacctctccttactagtttttccatttccttttcccccacaaagGGAAAGCTAGAAGATGGGACACGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGGgtgaggctggtctgtggtacatgttgtagtgagtgctacagcaagtgagc Alignment from Pairagon GGAAAGCTAGAAGATGGGACG-GAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG tggagcaacctctccttactagtttttccatttccttttcccccacaaagGGAAAGCTAGAAGATGGGACACGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGGgtgaggctggtctgtggtacatgttgtagtgagtgctacagcaagtgagc Alignment from Exonerate_protein2genome GGAAAGCTAGAAGATGGGACG-GAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG tggagcaacctctccttactagtttttccatttccttttcccccacaaagGGAAAGCTAGAAGATGGGACACGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGGgtgaggctggtctgtggtacatgttgtagtgagtgctacagcaagtgagc Alignment from Exonerate_coding2genome GGAAAGCTAGAAGATGGGACG-GAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG tggagcaacctctccttactagtttttccatttccttttcccccacaaagGGAAAGCTAGAAGATGGGACACGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGGgtgaggctggtctgtggtacatgttgtagtgagtgctacagcaagtgagc Alignment from GeneWise GGAAAGCTAGAAGATGGG-ACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG tggagcaacctctccttactagtttttccatttccttttcccccacaaagGGAAAGCTAGAAGATGGGACACGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGGgtgaggctggtctgtggtacatgttgtagtgagtgctacagcaagtgagc #### Frmd8_ID1284_4 --> 2 - 0 Original Alignment atGAGCCTTCCCTTCAGTTCCGAAGGAAT-GTTTTTTTCCCAAGGCGCCGAGAGCTCCAG ggctgccttaacccaggggaccagaaaattcatatcctgtgggtctgcagatGAGCCTTCCCTTCACTTCCGAAGGAATCGTTTTTTTCCCCAGGCGGCGCGAGCTCCAGgtgagtcaggactcaggcatatcaaagtgttcctgcatgtcagtgcccag Alignment from CESAR atGAGCCTTCCCTTCAGTTCCGAAGGAAT-GTTTTTTTCCCAAGGCGCCGAGAGCTCCAG ggctgccttaacccaggggaccagaaaattcatatcctgtgggtctgcagatGAGCCTTCCCTTCACTTCCGAAGGAATCGTTTTTTTCCCCAGGCGGCGCGAGCTCCAGgtgagtcaggactcaggcatatcaaagtgttcctgcatgtcagtgcccag Alignment from Spaln_aa2Genome ATGAGCCTTCCCTTCAGTTCCGAAGGAATGTT-TTTTTCCCAAGGCGCCGAGAGCTCCAG ggctgccttaacccaggggaccagaaaattcatatcctgtgggtctgcagATGAGCCTTCCCTTCACTTCCGAAGGAATCGTtTTTTTCCCCAGGCGGCGCGAGCTCCAGgtgagtcaggactcaggcatatcaaagtgttcctgcatgtcagtgcccag Alignment from Spaln_nt2Genome ATGAGCCTTCCCTTCAGTTCCGAAGGAAT-GTTTTTTTCCCAAGGCGCCGAGAGCTCCAG ggctgccttaacccaggggaccagaaaattcatatcctgtgggtctgcagATGAGCCTTCCCTTCACTTCCGAAGGAATCGTTTTTTTCCCCAGGCGGCGCGAGCTCCAGgtgagtcaggactcaggcatatcaaagtgttcctgcatgtcagtgcccag Alignment from Pairagon ATGAGCCTTCCCTTCAGTTCCGAAGGAAT-GTTTTTTTCCCAAGGCGCCGAGAGCTCCAG ggctgccttaacccaggggaccagaaaattcatatcctgtgggtctgcagATGAGCCTTCCCTTCACTTCCGAAGGAATCGTTTTTTTCCCCAGGCGGCGCGAGCTCCAGgtgagtcaggactcaggcatatcaaagtgttcctgcatgtcagtgcccag Alignment from Exonerate_protein2genome TCGCCATGGATGAGCCTTCCCTTCAGTTCCGAAGGAAT-GTTTTTTTCCCAAGGCGCCGAGAGCTCCAG ggctgccttaacccaggggaccagaaaattcatatcctgtgGGTCTGCAGATGAGCCTTCCCTTCACTTCCGAAGGAATCGTTTTTTTCCCCAGGCGGCGCGAGCTCCAGgtgagtcaggactcaggcatatcaaagtgttcctgcatgtcagtgcccag Alignment from Exonerate_coding2genome TCGCCATGGATGAGCCTTCCCTTCAGTTCCGAAGGAAT-GTTTTTTTCCCAAGGCGCCGAGAGCTCCAG ggctgccttaacccaggggaccagaaaattcatatcctgtgGGTCTGCAGATGAGCCTTCCCTTCACTTCCGAAGGAATCGTTTTTTTCCCCAGGCGGCGCGAGCTCCAGgtgagtcaggactcaggcatatcaaagtgttcctgcatgtcagtgcccag Alignment from GeneWise ATGAGCCTTCCCTTCAGTTCCGAAGGAAT-GTTTTTTTCCCAAGGCGCCGAGAGCTCCAG ggctgccttaacccaggggaccagaaaattcatatcctgtgggtctgcagATGAGCCTTCCCTTCACTTCCGAAGGAATCGTTTTTTTCCCCAGGCGGCGCGAGCTCCAGgtgagtcaggactcaggcatatcaaagtgttcctgcatgtcagtgcccag #### Ganab_ID2469_8 --> 0 - 1 Original Alignment CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACAT-TCTGACAGCAAGCCTTATg ggggaaagataactgggttgtaagtgggactgtgcgttttctcttcacagCCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTCTCTGACAGCAAGCCTTATggtaatcgattgggcaagaccaaagagaagtgcacaatttcacgtctctct Alignment from CESAR CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACAT-TCTGACAGCAAGCCTTATg ggggaaagataactgggttgtaagtgggactgtgcgttttctcttcacagCCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTCTCTGACAGCAAGCCTTATggtaatcgattgggcaagaccaaagagaagtgcctgctgttctgtttaccg Alignment from Spaln_aa2Genome CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACAT-TCTGACAGCAAGCCTTATG ggggaaagataactgggttgtaagtgggactgtgcgttttctcttcacagCCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTcTCTGACAGCAAGCCTTATGgtaatcgattgggcaagaccaaagagaagtgcacaatttcacgtctctct Alignment from Spaln_nt2Genome CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACAT-TCTGACAGCAAGCCTTATG ggggaaagataactgggttgtaagtgggactgtgcgttttctcttcacagCCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTCTCTGACAGCAAGCCTTATGgtaatcgattgggcaagaccaaagagaagtgcacaatttcacgtctctct Alignment from Pairagon CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACAT-TCTGACAGCAAGCCTTATG ggggaaagataactgggttgtaagtgggactgtgcgttttctcttcacagCCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTCTCTGACAGCAAGCCTTATGgtaatcgattgggcaagaccaaagagaagtgcacaatttcacgtctctct Alignment from Exonerate_protein2genome CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACAT-TCTGACAGCAAGCCTTATG ggggaaagataactgggttgtaagtgggactgtgcgttttctcttcacagCCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTCTCTGACAGCAAGCCTTATGgtaatcgattgggcaagaccaaagagaagtgcacaatttcacgtctctct Alignment from Exonerate_coding2genome CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACAT-TCTGACAGCAAGCCTTATG ggggaaagataactgggttgtaagtgggactgtgcgttttctcttcacagCCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTCTCTGACAGCAAGCCTTATGgtaatcgattgggcaagaccaaagagaagtgcacaatttcacgtctctct Alignment from GeneWise CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACA-CATTCTGACAGCAAGCCTTAT--------------------------------------------------- ggggaaagataactgggttgtaagtgggactgtgcgttttctcttcacagCCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTCTCTGACAGCAAGCCTTATGGTAATCGATTGGGCAAGACCAAAGAGAAGTGCACAATTTCACGTCTCTCT #### Ganab_ID2470_9 --> 2 - 2 Original Alignment gcCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTG-AGACTGAAGGTCACTga gcgattgggcaagaccaaagagaagtgcctgctgttctgtttaccgaaaggcCCCATGTCTGTTGGTTTGGACTTTTCTCTGCCATGGATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCTTGCAGACTGAAGGTCACTgagtaaggcctatggtaacgcaaggatggggttaacagaggcagtctgggcc Alignment from CESAR gcCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTG-AGACTGAAGGTCACTga tcgattgggcaagaccaaagagaagtgcctgctgttctgtttaccgaaaggcCCCATGTCTGTTGGTTTGGACTTTTCTCTGCCATGGATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCTTGCAGACTGAAGGTCACTgagtaaggcctatggtaacgcaaggatggggttaacagaggcagtctgggcc Alignment from Spaln_aa2Genome GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTG-AGACTGAAGGTCACTGA gcgattgggcaagaccaaagagaagtgcctgctgttctgtttaccgaaagGCCCCATGTCTGTTGGTTTGGACTTTTCTCTGCCATGGATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCTTGcAGACTGAAGGTCACTGAgtaaggcctatggtaacgcaaggatggggttaacagaggcagtctgggcc Alignment from Spaln_nt2Genome GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTG-AGACTGAAGGTCACTGA gcgattgggcaagaccaaagagaagtgcctgctgttctgtttaccgaaagGCCCCATGTCTGTTGGTTTGGACTTTTCTCTGCCATGGATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCTTGCAGACTGAAGGTCACTGAgtaaggcctatggtaacgcaaggatggggttaacagaggcagtctgggcc Alignment from Pairagon GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTG-AGACTGAAGGTCACTGA gcgattgggcaagaccaaagagaagtgcctgctgttctgtttaccgaaagGCCCCATGTCTGTTGGTTTGGACTTTTCTCTGCCATGGATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCTTGCAGACTGAAGGTCACTGAgtaaggcctatggtaacgcaaggatggggttaacagaggcagtctgggcc Alignment from Exonerate_protein2genome GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTG-AGACTGAAGGTCACTGA gcgattgggcaagaccaaagagaagtgcctgctgttctgtttaccgaaagGCCCCATGTCTGTTGGTTTGGACTTTTCTCTGCCATGGATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCTTGCAGACTGAAGGTCACTGAgtaaggcctatggtaacgcaaggatggggttaacagaggcagtctgggcc Alignment from Exonerate_coding2genome GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTG-AGACTGAAGGTCACTGA gcgattgggcaagaccaaagagaagtgcctgctgttctgtttaccgaaagGCCCCATGTCTGTTGGTTTGGACTTTTCTCTGCCATGGATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCTTGCAGACTGAAGGTCACTGAgtaaggcctatggtaacgcaaggatggggttaacagaggcagtctgggcc Alignment from GeneWise -------------------------------------------------GGCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAG- GCGATTGGGCAAGACCAAAGAGAAGTGCCTGCTGTTCTGTTTACCGAAAGGCCCCATGTCTGTTGGTTTGGACTTTTCTCTGCCATGGATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCTTGCAGACTGAAGgtcactgagtaaggcctatggtaacgcaaggatggggttaacagaggcagtctgggcc #### Ganab_ID2473_12 --> 2 - 0 Original Alignment ggACCCAGGCATTGCCCCCACTCTTCTCCCTC-GGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG cttaagttttgctctttcaccagcccgacactcatatctcctcgttccagggACCCAGGCATTGCCCCCACTCTCCTCCCTTCGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCGGATGTCTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCCTGTGATGTCATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACCTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGCTTGATCACCTGGCTTCCAAGAGGCGGAAGgtaagcgggtgctgtagctgtgagggtgcctcttgtatagtgttggggac Alignment from CESAR ggACCCAGGCATTGCCCCCACTCTTCTCCCTC-GGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG cttaagttttgctctttcaccagcccgacactcatatctcctcgttccagggACCCAGGCATTGCCCCCACTCTCCTCCCTTCGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCGGATGTCTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCCTGTGATGTCATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACCTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGCTTGATCACCTGGCTTCCAAGAGGCGGAAGgtaagcgggtgctgtagctgtgagggtgcctcttgtatagtgttggggac Alignment from Spaln_aa2Genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTC-GGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG cttaagttttgctctttcaccagcccgacactcatatctcctcgttccagGGACCCAGGCATTGCCCCCACTCTCCTCCCTTcGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCGGATGTCTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCCTGTGATGTCATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACCTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGCTTGATCACCTGGCTTCCAAGAGGCGGAAGgtaagcgggtgctgtagctgtgagggtgcctcttgtatagtgttggggac Alignment from Spaln_nt2Genome GGACCCAGGCATTGCCCCCACTCTTCT-CCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG cttaagttttgctctttcaccagcccgacactcatatctcctcgttccagGGACCCAGGCATTGCCCCCACTCTCCTCCCTTCGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCGGATGTCTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCCTGTGATGTCATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACCTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGCTTGATCACCTGGCTTCCAAGAGGCGGAAGgtaagcgggtgctgtagctgtgagggtgcctcttgtatagtgttggggac Alignment from Pairagon GGACCCAGGCATTGCCCCCACTCTTCTCCC-TCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG cttaagttttgctctttcaccagcccgacactcatatctcctcgttccagGGACCCAGGCATTGCCCCCACTCTCCTCCCTTCGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCGGATGTCTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCCTGTGATGTCATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACCTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGCTTGATCACCTGGCTTCCAAGAGGCGGAAGgtaagcgggtgctgtagctgtgagggtgcctcttgtatagtgttggggac Alignment from Exonerate_protein2genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTC-GGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG cttaagttttgctctttcaccagcccgacactcatatctcctcgttccagGGACCCAGGCATTGCCCCCACTCTCCTCCCTTCGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCGGATGTCTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCCTGTGATGTCATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACCTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGCTTGATCACCTGGCTTCCAAGAGGCGGAAGgtaagcgggtgctgtagctgtgagggtgcctcttgtatagtgttggggac Alignment from Exonerate_coding2genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTC-GGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG cttaagttttgctctttcaccagcccgacactcatatctcctcgttccagGGACCCAGGCATTGCCCCCACTCTCCTCCCTTCGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCGGATGTCTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCCTGTGATGTCATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACCTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGCTTGATCACCTGGCTTCCAAGAGGCGGAAGgtaagcgggtgctgtagctgtgagggtgcctcttgtatagtgttggggac Alignment from GeneWise GGACCCAGGCATTGCCCCCACTCTTCTCC-CTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG cttaagttttgctctttcaccagcccgacactcatatctcctcgttccagGGACCCAGGCATTGCCCCCACTCTCCTCCCTTCGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCGGATGTCTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCCTGTGATGTCATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACCTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGCTTGATCACCTGGCTTCCAAGAGGCGGAAGgtaagcgggtgctgtagctgtgagggtgcctcttgtatagtgttggggac #### Ganab_ID2475_14 --> 2 - 0 Original Alignment gcTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCT-AACATGTTCAGCTTTGACAATTATGAG atgaagcagtcaaagaggcaaagatattcactcgctcgctctctcctcaggcTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTCAACATGTTCAGCTTTGACAATTATGAGgtgaggaagactatccatatgtcctctgtttttgtaaattgccttcatta Alignment from CESAR gcTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCT-AACATGTTCAGCTTTGACAATTATGAG atgaagcagtcaaagaggcaaagatattcactcgctcgctctctcctcaggcTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTCAACATGTTCAGCTTTGACAATTATGAGgtgaggaagactatccatatgtcctctgtttttgtaaattgccttcatta Alignment from Spaln_aa2Genome GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCT-AACATGTTCAGCTTTGACAATTATGAG atgaagcagtcaaagaggcaaagatattcactcgctcgctctctcctcagGCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTcAACATGTTCAGCTTTGACAATTATGAGgtgaggaagactatccatatgtcctctgtttttgtaaattgccttcatta Alignment from Spaln_nt2Genome GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCT-AACATGTTCAGCTTTGACAATTATGAG atgaagcagtcaaagaggcaaagatattcactcgctcgctctctcctcagGCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTCAACATGTTCAGCTTTGACAATTATGAGgtgaggaagactatccatatgtcctctgtttttgtaaattgccttcatta Alignment from Pairagon GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCT-AACATGTTCAGCTTTGACAATTATGAG atgaagcagtcaaagaggcaaagatattcactcgctcgctctctcctcagGCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTCAACATGTTCAGCTTTGACAATTATGAGgtgaggaagactatccatatgtcctctgtttttgtaaattgccttcatta Alignment from Exonerate_protein2genome GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCT-AACATGTTCAGCTTTGACAATTATGAG atgaagcagtcaaagaggcaaagatattcactcgctcgctctctcctcagGCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTCAACATGTTCAGCTTTGACAATTATGAGgtgaggaagactatccatatgtcctctgtttttgtaaattgccttcatta Alignment from Exonerate_coding2genome GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCT-AACATGTTCAGCTTTGACAATTATGAG atgaagcagtcaaagaggcaaagatattcactcgctcgctctctcctcagGCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTCAACATGTTCAGCTTTGACAATTATGAGgtgaggaagactatccatatgtcctctgtttttgtaaattgccttcatta Alignment from GeneWise GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGG-TCTAACATGTTCAGCTTTGACAATTATGAG atgaagcagtcaaagaggcaaagatattcactcgctcgctctctcctcagGCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTCAACATGTTCAGCTTTGACAATTATGAGgtgaggaagactatccatatgtcctctgtttttgtaaattgccttcatta #### Ganab_ID2477_16 --> 0 - 1 Original Alignment CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGT-CCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTg accagaaggcagatggcatatgttcttccatatgtggctttcctgtttagCACATGGCAACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCCTTTGTGCTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTggtgagtagtggagactagagctgtagctttagtcacctgggctgcctaaa Alignment from CESAR CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGT-CCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTg accagaaggcagatggcatatgttcttccatatgtggctttcctgtttagCACATGGCAACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCCTTTGTGCTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTggtgagtagtggagactagagctgtagctttagtcacctgggctgcctaaa Alignment from Spaln_aa2Genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCC-TTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggcagatggcatatgttcttccatatgtggctttcctgtttagCACATGGCAACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCcTTTGTGCTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtgagtagtggagactagagctgtagctttagtcacctgggctgcctaaa Alignment from Spaln_nt2Genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGT-CCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggcagatggcatatgttcttccatatgtggctttcctgtttagCACATGGCAACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCCTTTGTGCTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtgagtagtggagactagagctgtagctttagtcacctgggctgcctaaa Alignment from Pairagon CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGT-CCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggcagatggcatatgttcttccatatgtggctttcctgtttagCACATGGCAACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCCTTTGTGCTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtgagtagtggagactagagctgtagctttagtcacctgggctgcctaaa Alignment from Exonerate_protein2genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGT-CCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggcagatggcatatgttcttccatatgtggctttcctgtttagCACATGGCAACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCCTTTGTGCTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtgagtagtggagactagagctgtagctttagtcacctgggctgcctaaa Alignment from Exonerate_coding2genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGT-CCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggcagatggcatatgttcttccatatgtggctttcctgtttagCACATGGCAACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCCTTTGTGCTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtgagtagtggagactagagctgtagctttagtcacctgggctgcctaaa Alignment from GeneWise CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAG-CGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggcagatggcatatgttcttccatatgtggctttcctgtttagCACATGGCAACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCCTTTGTGCTGAGTAGGGCTTTCTTCTCAGGTTCCCAGCGGTTTGgtgagtagtggagactagagctgtagctttagtcacctgggctgcctaaa #### Ganab_ID2478_17 --> 2 - 1 Original Alignment gaGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTC-AGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAg gaccgagttccttgccatgtatcaggctaacaatttccctttcctaacaggaGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCATATGTGTCTCCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAggtaagagaaggagacatttggggtattgctttggacatttggggttttgc Alignment from CESAR gaGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTC-AGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAg gaccgagttccttgccatgtatcaggctaacaatttccctttcctaacaggaGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCATATGTGTCTCCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAggtaagagaaggagacatttggggtattgctttggacatttggggttttgc Alignment from Spaln_aa2Genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTC-AGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG gaccgagttccttgccatgtatcaggctaacaatttccctttcctaacagGAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCATATGTGTCTCcAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAGgtaagagaaggagacatttggggtattgctttggacatttggggttttgc Alignment from Spaln_nt2Genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCT-CAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG gaccgagttccttgccatgtatcaggctaacaatttccctttcctaacagGAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCATATGTGTCTCCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAGgtaagagaaggagacatttggggtattgctttggacatttggggttttgc Alignment from Pairagon GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCT-CAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG gaccgagttccttgccatgtatcaggctaacaatttccctttcctaacagGAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCATATGTGTCTCCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAGgtaagagaaggagacatttggggtattgctttggacatttggggttttgc Alignment from Exonerate_protein2genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTC-AGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG gaccgagttccttgccatgtatcaggctaacaatttccctttcctaacagGAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCATATGTGTCTCCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAGgtaagagaaggagacatttggggtattgctttggacatttggggttttgc Alignment from Exonerate_coding2genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTC-AGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG gaccgagttccttgccatgtatcaggctaacaatttccctttcctaacagGAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCATATGTGTCTCCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAGgtaagagaaggagacatttggggtattgctttggacatttggggttttgc Alignment from GeneWise GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCTATGTGTCTC-AGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG gaccgagttccttgccatgtatcaggctaacaatttccctttcctaacagGAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCATATGTGTCTCCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAGgtaagagaaggagacatttggggtattgctttggacatttggggttttgc #### Ganab_ID2481_20 --> 2 - 0 Original Alignment gtGATGCACTCCTTATTCACCCTGTATCGGATGCT-GGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA aggtaccagaaatgtgtaggacgtgtatcctcttttctccccctttgcaggtGACGCACTCCTTATTCATCCTGTATCAGATGCTCGGGGCCCATGGAGTGCAGGTTTATTTGCCTGGCCAAGAAGAAgtgagtcacaaaacattgcggccaaagggacaaaaacatagaatccctat Alignment from CESAR gtGATGCACTCCTTATTCACCCTGTATCGGATGCT-GGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA aggtaccagaaatgtgtaggacgtgtatcctcttttctccccctttgcaggtGACGCACTCCTTATTCATCCTGTATCAGATGCTCGGGGCCCATGGAGTGCAGGTTTATTTGCCTGGCCAAGAAGAAgtgagtcacaaaacattgcggccaaagggacaaaaacatagaatccctat Alignment from Spaln_aa2Genome GTGATGCACTCCTTATTCACCCTGTATCGGATGCT-GGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA aggtaccagaaatgtgtaggacgtgtatcctcttttctccccctttgcagGTGACGCACTCCTTATTCATCCTGTATCAGATGCTcGGGGCCCATGGAGTGCAGGTTTATTTGCCTGGCCAAGAAGAAgtgagtcacaaaacattgcggccaaagggacaaaaacatagaatccctat Alignment from Spaln_nt2Genome GTGATGCACTCCTTATTCACCCTGTATCGGATGCT-GGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA aggtaccagaaatgtgtaggacgtgtatcctcttttctccccctttgcagGTGACGCACTCCTTATTCATCCTGTATCAGATGCTCGGGGCCCATGGAGTGCAGGTTTATTTGCCTGGCCAAGAAGAAgtgagtcacaaaacattgcggccaaagggacaaaaacatagaatccctat Alignment from Pairagon GTGATGCACTCCTTATTCACCCTGTATCGGATGCT-GGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA aggtaccagaaatgtgtaggacgtgtatcctcttttctccccctttgcagGTGACGCACTCCTTATTCATCCTGTATCAGATGCTCGGGGCCCATGGAGTGCAGGTTTATTTGCCTGGCCAAGAAGAAgtgagtcacaaaacattgcggccaaagggacaaaaacatagaatccctat Alignment from Exonerate_protein2genome GTGATGCACTCCTTATTCACCCTGTATCGGATGCT-GGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA aggtaccagaaatgtgtaggacgtgtatcctcttttctccccctttgcagGTGACGCACTCCTTATTCATCCTGTATCAGATGCTCGGGGCCCATGGAGTGCAGGTTTATTTGCCTGGCCAAGAAGAAgtgagtcacaaaacattgcggccaaagggacaaaaacatagaatccctat Alignment from Exonerate_coding2genome GTGATGCACTCCTTATTCACCCTGTATCGGATGCT-GGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA aggtaccagaaatgtgtaggacgtgtatcctcttttctccccctttgcagGTGACGCACTCCTTATTCATCCTGTATCAGATGCTCGGGGCCCATGGAGTGCAGGTTTATTTGCCTGGCCAAGAAGAAgtgagtcacaaaacattgcggccaaagggacaaaaacatagaatccctat Alignment from GeneWise GTGATGCACTCCTTATTCACCCTGTATCGGAT-GCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA aggtaccagaaatgtgtaggacgtgtatcctcttttctccccctttgcagGTGACGCACTCCTTATTCATCCTGTATCAGATGCTCGGGGCCCATGGAGTGCAGGTTTATTTGCCTGGCCAAGAAGAAgtgagtcacaaaacattgcggccaaagggacaaaaacatagaatccctat #### Ganab_ID2483_22 --> 0 - 0 Original Alignment ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTT-GCTCTCAGTCCCCAG gcttgaaaggcatgaaggagtagtgcttgtgcccttacccccacccacagATCCCCGTGTTCCAGCGTGGTGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTTGTTCGCTCTCAGTCCCCAGgtgaggatccagtggatgagagctgacttaaccattgtccgtcctctagg Alignment from CESAR ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTT-GCTCTCAGTCCCCAG gcttgaaaggcatgaaggagtagtgcttgtgcccttacccccacccacagATCCCCGTGTTCCAGCGTGGTGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTTGTTCGCTCTCAGTCCCCAGgtgaggatccagtggatgagagctgacttaaccattgtccgtcctctagg Alignment from Spaln_aa2Genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTT-GCTCTCAGTCCCCAG gcttgaaaggcatgaaggagtagtgcttgtgcccttacccccacccacagATCCCCGTGTTCCAGCGTGGTGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTTGTTcGCTCTCAGTCCCCAGgtgaggatccagtggatgagagctgacttaaccattgtccgtcctctagg Alignment from Spaln_nt2Genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTT-GCTCTCAGTCCCCAG gcttgaaaggcatgaaggagtagtgcttgtgcccttacccccacccacagATCCCCGTGTTCCAGCGTGGTGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTTGTTCGCTCTCAGTCCCCAGgtgaggatccagtggatgagagctgacttaaccattgtccgtcctctagg Alignment from Pairagon ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTT-GCTCTCAGTCCCCAG gcttgaaaggcatgaaggagtagtgcttgtgcccttacccccacccacagATCCCCGTGTTCCAGCGTGGTGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTTGTTCGCTCTCAGTCCCCAGgtgaggatccagtggatgagagctgacttaaccattgtccgtcctctagg Alignment from Exonerate_protein2genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTT-GCTCTCAGTCCCCAG gcttgaaaggcatgaaggagtagtgcttgtgcccttacccccacccacagATCCCCGTGTTCCAGCGTGGTGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTTGTTCGCTCTCAGTCCCCAGgtgaggatccagtggatgagagctgacttaaccattgtccgtcctctagg Alignment from Exonerate_coding2genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTT-GCTCTCAGTCCCCAG gcttgaaaggcatgaaggagtagtgcttgtgcccttacccccacccacagATCCCCGTGTTCCAGCGTGGTGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTTGTTCGCTCTCAGTCCCCAGgtgaggatccagtggatgagagctgacttaaccattgtccgtcctctagg Alignment from GeneWise ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAGGGT--------- gcttgaaaggcatgaaggagtagtgcttgtgcccttacccccacccacagATCCCCGTGTTCCAGCGTGGTGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCTCTTTGTTCGCTCTCAGTCCCCAGGTGAGGATCCAgtggatgagagctgacttaaccattgtccgtcctctagg #### Gbf1_ID9800_19 --> 0 - 0 Original Alignment AGTTGTAATGGCTCC-CCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG ttagttgtcggaaaaggatgttaatacatcgttaccttgtctttcactagAGTTGTAATGGCTCCCCCTTTTGCTAATAGTGATGCCTGCTTTGCCCTAGCCTATGGTGTTATCATGCTTAACACTGACCAGCACAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAGgtattgttgaaacagaagatccgtacagctttgaaagtgtcaacaatacc Alignment from CESAR AGTTGTAATGGCTCC-CCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG ttagttgtcggaaaaggatgttaatacatcgttaccttgtctttcactagAGTTGTAATGGCTCCCCCTTTTGCTAATAGTGATGCCTGCTTTGCCCTAGCCTATGGTGTTATCATGCTTAACACTGACCAGCACAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAGgtattgttgaaacagaagatccgtacagctttgaaagtgtcaacaatacc Alignment from Spaln_aa2Genome AGTTGTAATGGCTCC-CCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG ttagttgtcggaaaaggatgttaatacatcgttaccttgtctttcactagAGTTGTAATGGCTCCcCCTTTTGCTAATAGTGATGCCTGCTTTGCCCTAGCCTATGGTGTTATCATGCTTAACACTGACCAGCACAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAGgtattgttgaaacagaagatccgtacagctttgaaagtgtcaacaatacc Alignment from Spaln_nt2Genome AGTTGTAATGGCTCCCCATTT-GCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG ttagttgtcggaaaaggatgttaatacatcgttaccttgtctttcactagAGTTGTAATGGCTCCCCCTTTTGCTAATAGTGATGCCTGCTTTGCCCTAGCCTATGGTGTTATCATGCTTAACACTGACCAGCACAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAGgtattgttgaaacagaagatccgtacagctttgaaagtgtcaacaatacc Alignment from Pairagon AGTTGTAATGGCTCCCCA-TTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG ttagttgtcggaaaaggatgttaatacatcgttaccttgtctttcactagAGTTGTAATGGCTCCCCCTTTTGCTAATAGTGATGCCTGCTTTGCCCTAGCCTATGGTGTTATCATGCTTAACACTGACCAGCACAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAGgtattgttgaaacagaagatccgtacagctttgaaagtgtcaacaatacc Alignment from Exonerate_protein2genome AGTTGTAATGGCTCC-CCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG ttagttgtcggaaaaggatgttaatacatcgttaccttgtctttcactagAGTTGTAATGGCTCCCCCTTTTGCTAATAGTGATGCCTGCTTTGCCCTAGCCTATGGTGTTATCATGCTTAACACTGACCAGCACAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAGgtattgttgaaacagaagatccgtacagctttgaaagtgtcaacaatacc Alignment from Exonerate_coding2genome AGTTGTAATGGCTCC-CCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG ttagttgtcggaaaaggatgttaatacatcgttaccttgtctttcactagAGTTGTAATGGCTCCCCCTTTTGCTAATAGTGATGCCTGCTTTGCCCTAGCCTATGGTGTTATCATGCTTAACACTGACCAGCACAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAGgtattgttgaaacagaagatccgtacagctttgaaagtgtcaacaatacc Alignment from GeneWise AGTTGTAATGGC-TCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG ttagttgtcggaaaaggatgttaatacatcgttaccttgtctttcactagAGTTGTAATGGCTCCCCCTTTTGCTAATAGTGATGCCTGCTTTGCCCTAGCCTATGGTGTTATCATGCTTAACACTGACCAGCACAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAGgtattgttgaaacagaagatccgtacagctttgaaagtgtcaacaatacc #### Gbf1_ID9805_24 --> 0 - 2 Original Alignment GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTA-CAGCGGGAGGAGACACCATCCAACcg agcgcattcagtactgagccatttgtcaactgaatcctcctgttccccagGTAGAAGATTTTGTGGACCCCAATGGCAAGATCTCTCTACCAGCGCGAGGAGACACCATCTAACcggtaagagcagaccagtcattaagagcctagagaaaagtagttgtagtagt Alignment from CESAR GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTA-CAGCGGGAGGAGACACCATCCAACcg agcgcattcagtactgagccatttgtcaactgaatcctcctgttccccagGTAGAAGATTTTGTGGACCCCAATGGCAAGATCTCTCTACCAGCGCGAGGAGACACCATCTAACcggtaagagcagaccagtcattaagagcctagagaaaagtagttgtagtagt Alignment from Spaln_aa2Genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTA-CAGCGGGAGGAGACACCATCCAACCG agcgcattcagtactgagccatttgtcaactgaatcctcctgttccccagGTAGAAGATTTTGTGGACCCCAATGGCAAGATCTCTCTAcCAGCGCGAGGAGACACCATCTAACCGgtaagagcagaccagtcattaagagcctagagaaaagtagttgtagtagt Alignment from Spaln_nt2Genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTA-CAGCGGGAGGAGACACCATCCAACCG agcgcattcagtactgagccatttgtcaactgaatcctcctgttccccagGTAGAAGATTTTGTGGACCCCAATGGCAAGATCTCTCTACCAGCGCGAGGAGACACCATCTAACCGgtaagagcagaccagtcattaagagcctagagaaaagtagttgtagtagt Alignment from Pairagon GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTA-CAGCGGGAGGAGACACCATCCAACCG agcgcattcagtactgagccatttgtcaactgaatcctcctgttccccagGTAGAAGATTTTGTGGACCCCAATGGCAAGATCTCTCTACCAGCGCGAGGAGACACCATCTAACCGgtaagagcagaccagtcattaagagcctagagaaaagtagttgtagtagt Alignment from Exonerate_protein2genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTA-CAGCGGGAGGAGACACCATCCAACCG agcgcattcagtactgagccatttgtcaactgaatcctcctgttccccagGTAGAAGATTTTGTGGACCCCAATGGCAAGATCTCTCTACCAGCGCGAGGAGACACCATCTAACCGgtaagagcagaccagtcattaagagcctagagaaaagtagttgtagtagt Alignment from Exonerate_coding2genome GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTA-CAGCGGGAGGAGACACCATCCAACCG agcgcattcagtactgagccatttgtcaactgaatcctcctgttccccagGTAGAAGATTTTGTGGACCCCAATGGCAAGATCTCTCTACCAGCGCGAGGAGACACCATCTAACCGgtaagagcagaccagtcattaagagcctagagaaaagtagttgtagtagt Alignment from GeneWise GTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCT-CTACAGCGGGAGGAGACACCATCCAACCG agcgcattcagtactgagccatttgtcaactgaatcctcctgttccccagGTAGAAGATTTTGTGGACCCCAATGGCAAGATCTCTCTACCAGCGCGAGGAGACACCATCTAACCGgtaagagcagaccagtcattaagagcctagagaaaagtagttgtagtagt #### Gbf1_ID9807_26 --> 0 - 0 Original Alignment CAATGTGACCCA-GAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcatggatcctaaaatctgctctcctcctagCAATGTGACCCACGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAGgtaggttatgaacagatctgagaaaggcaaaacggtggtgatgcagcctc Alignment from CESAR CAATGTGACCCA-GAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcatggatcctaaaatctgctctcctcctagCAATGTGACCCACGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAGgtaggttatgaacagatctgagaaaggcaaaacggtggtgatgcagcctc Alignment from Spaln_aa2Genome CAATGTGACCCA-GAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcatggatcctaaaatctgctctcctcctagCAATGTGACCCAcGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAGgtaggttatgaacagatctgagaaaggcaaaacggtggtgatgcagcctc Alignment from Spaln_nt2Genome CAATGTGACCCA-GAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcatggatcctaaaatctgctctcctcctagCAATGTGACCCACGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAGgtaggttatgaacagatctgagaaaggcaaaacggtggtgatgcagcctc Alignment from Pairagon CAATGTGACCCA-GAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcatggatcctaaaatctgctctcctcctagCAATGTGACCCACGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAGgtaggttatgaacagatctgagaaaggcaaaacggtggtgatgcagcctc Alignment from Exonerate_protein2genome CAATGTGACCCA-GAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcatggatcctaaaatctgctctcctcctagCAATGTGACCCACGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAGgtaggttatgaacagatctgagaaaggcaaaacggtggtgatgcagcctc Alignment from Exonerate_coding2genome CAATGTGACCCA-GAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcatggatcctaaaatctgctctcctcctagCAATGTGACCCACGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAGgtaggttatgaacagatctgagaaaggcaaaacggtggtgatgcagcctc Alignment from GeneWise CAATGTGACCCA-GAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcatggatcctaaaatctgctctcctcctagCAATGTGACCCACGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAGgtaggttatgaacagatctgagaaaggcaaaacggtggtgatgcagcctc #### Gbf1_ID9812_31 --> 0 - 1 Original Alignment GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGT-GTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTg tatgtctggctgggaaatgggccccagcctgatgctgacctttgtctcagGTGGGGAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGTCCCTGCTCAAGTGTCGTAGAGTCACTGTCCTTCATTGTCCGAGATGCTGCCCACATCACGCCTGACAACTTTGAACTCTGTGTCAAGACCCTCCGCATCTTTGTAGAAGCCAGTCTGAATGATggtaggttatctatgccaggggccatcagggagtgggtcaagtgaggaggg Alignment from CESAR GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGT-GTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTg tatgtctggctgggaaatgggccccagcctgatgctgacctttgtctcagGTGGGGAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGTCCCTGCTCAAGTGTCGTAGAGTCACTGTCCTTCATTGTCCGAGATGCTGCCCACATCACGCCTGACAACTTTGAACTCTGTGTCAAGACCCTCCGCATCTTTGTAGAAGCCAGTCTGAATGATggtaggttatctatgccaggggccatcagggagtgggtcaagtgaggaggg Alignment from Spaln_aa2Genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGT-GTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG tatgtctggctgggaaatgggccccagcctgatgctgacctttgtctcagGTGGGGAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGTCCCTGCTCAAGTGTcGTAGAGTCACTGTCCTTCATTGTCCGAGATGCTGCCCACATCACGCCTGACAACTTTGAACTCTGTGTCAAGACCCTCCGCATCTTTGTAGAAGCCAGTCTGAATGATGgtaggttatctatgccaggggccatcagggagtgggtcaagtgaggaggg Alignment from Spaln_nt2Genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGT-GTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG tatgtctggctgggaaatgggccccagcctgatgctgacctttgtctcagGTGGGGAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGTCCCTGCTCAAGTGTCGTAGAGTCACTGTCCTTCATTGTCCGAGATGCTGCCCACATCACGCCTGACAACTTTGAACTCTGTGTCAAGACCCTCCGCATCTTTGTAGAAGCCAGTCTGAATGATGgtaggttatctatgccaggggccatcagggagtgggtcaagtgaggaggg Alignment from Pairagon GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGT-GTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG tatgtctggctgggaaatgggccccagcctgatgctgacctttgtctcagGTGGGGAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGTCCCTGCTCAAGTGTCGTAGAGTCACTGTCCTTCATTGTCCGAGATGCTGCCCACATCACGCCTGACAACTTTGAACTCTGTGTCAAGACCCTCCGCATCTTTGTAGAAGCCAGTCTGAATGATGgtaggttatctatgccaggggccatcagggagtgggtcaagtgaggaggg Alignment from Exonerate_protein2genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGT-GTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG tatgtctggctgggaaatgggccccagcctgatgctgacctttgtctcagGTGGGGAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGTCCCTGCTCAAGTGTCGTAGAGTCACTGTCCTTCATTGTCCGAGATGCTGCCCACATCACGCCTGACAACTTTGAACTCTGTGTCAAGACCCTCCGCATCTTTGTAGAAGCCAGTCTGAATGATGgtaggttatctatgccaggggccatcagggagtgggtcaagtgaggaggg Alignment from Exonerate_coding2genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGT-GTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG tatgtctggctgggaaatgggccccagcctgatgctgacctttgtctcagGTGGGGAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGTCCCTGCTCAAGTGTCGTAGAGTCACTGTCCTTCATTGTCCGAGATGCTGCCCACATCACGCCTGACAACTTTGAACTCTGTGTCAAGACCCTCCGCATCTTTGTAGAAGCCAGTCTGAATGATGgtaggttatctatgccaggggccatcagggagtgggtcaagtgaggaggg Alignment from GeneWise GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGT-GTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG tatgtctggctgggaaatgggccccagcctgatgctgacctttgtctcagGTGGGGAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTTGATCTGGGCCCACATGACACTAAGTCCCTGCTCAAGTGTCGTAGAGTCACTGTCCTTCATTGTCCGAGATGCTGCCCACATCACGCCTGACAACTTTGAACTCTGTGTCAAGACCCTCCGCATCTTTGTAGAAGCCAGTCTGAATGATGgtaggttatctatgccaggggccatcagggagtgggtcaagtgaggaggg #### Gbf1_ID9815_34 --> 2 - 0 Original Alignment gaATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAG-AAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgtgcacatacacactctctccctgccggtacactgtgtgcaggaATTGCCTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCCTGACATATCTACAGCGAGCGCTTCTGGTGCATGATCTGCAGCAAGCTAGATGCCCTGGAGTGGGAGTCATGTTTTAACAAGgtgagcctctcctcttaagagaaagttcagataacaaggcaaaaaggttg Alignment from CESAR gaATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAG-AAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgtgcacatacacactctctccctgccggtacactgtgtgcaggaATTGCCTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCCTGACATATCTACAGCGAGCGCTTCTGGTGCATGATCTGCAGCAAGCTAGATGCCCTGGAGTGGGAGTCATGTTTTAACAAGgtgagcctctcctcttaagagaaagttcagataacaaggcaaaaaggttg Alignment from Spaln_aa2Genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAG-AAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgtgcacatacacactctctccctgccggtacactgtgtgcagGAATTGCCTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCCTGACATATCTACAGCGAGCGCTTCTGGTGCATGATCTGCAGcAAGCTAGATGCCCTGGAGTGGGAGTCATGTTTTAACAAGgtgagcctctcctcttaagagaaagttcagataacaaggcaaaaaggttg Alignment from Spaln_nt2Genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAG-AAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgtgcacatacacactctctccctgccggtacactgtgtgcagGAATTGCCTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCCTGACATATCTACAGCGAGCGCTTCTGGTGCATGATCTGCAGCAAGCTAGATGCCCTGGAGTGGGAGTCATGTTTTAACAAGgtgagcctctcctcttaagagaaagttcagataacaaggcaaaaaggttg Alignment from Pairagon GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAG-AAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgtgcacatacacactctctccctgccggtacactgtgtgcagGAATTGCCTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCCTGACATATCTACAGCGAGCGCTTCTGGTGCATGATCTGCAGCAAGCTAGATGCCCTGGAGTGGGAGTCATGTTTTAACAAGgtgagcctctcctcttaagagaaagttcagataacaaggcaaaaaggttg Alignment from Exonerate_protein2genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAG-AAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgtgcacatacacactctctccctgccggtacactgtgtgcagGAATTGCCTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCCTGACATATCTACAGCGAGCGCTTCTGGTGCATGATCTGCAGCAAGCTAGATGCCCTGGAGTGGGAGTCATGTTTTAACAAGgtgagcctctcctcttaagagaaagttcagataacaaggcaaaaaggttg Alignment from Exonerate_coding2genome GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAG-AAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgtgcacatacacactctctccctgccggtacactgtgtgcagGAATTGCCTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCCTGACATATCTACAGCGAGCGCTTCTGGTGCATGATCTGCAGCAAGCTAGATGCCCTGGAGTGGGAGTCATGTTTTAACAAGgtgagcctctcctcttaagagaaagttcagataacaaggcaaaaaggttg Alignment from GeneWise GAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAG-AAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAG acacacttgtgcacatacacactctctccctgccggtacactgtgtgcagGAATTGCCTGCTTATGCTGTGATGCCCGACGCCAGGTACGGATGCAGGCCCTGACATATCTACAGCGAGCGCTTCTGGTGCATGATCTGCAGCAAGCTAGATGCCCTGGAGTGGGAGTCATGTTTTAACAAGgtgagcctctcctcttaagagaaagttcagataacaaggcaaaaaggttg #### Gbf1_ID9816_35 --> 0 - 0 Original Alignment GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCC-ACACTGCTCTCAAAG cccacgcccaactggctgggctaatgtgtttcacttacatctttttacagGTGCTGTTTCCTCTCCTGACCAAGCTCTTGGAAAATATCAGCCCTGCAGATGTGGGTGGGATGGAAGAGACCCGGATGCGGGCTTCCCACACTGCTCTCAAAGgtacatgttttccactctgcccccatctctctgcctcaaacctccttttc Alignment from CESAR GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCC-ACACTGCTCTCAAAG cccacgcccaactggctgggctaatgtgtttcacttacatctttttacagGTGCTGTTTCCTCTCCTGACCAAGCTCTTGGAAAATATCAGCCCTGCAGATGTGGGTGGGATGGAAGAGACCCGGATGCGGGCTTCCCACACTGCTCTCAAAGgtacatgttttccactctgcccccatctctctgcctcaaacctccttttc Alignment from Spaln_aa2Genome GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCC-ACACTGCTCTCAAAG cccacgcccaactggctgggctaatgtgtttcacttacatctttttacagGTGCTGTTTCCTCTCCTGACCAAGCTCTTGGAAAATATCAGCCCTGCAGATGTGGGTGGGATGGAAGAGACCCGGATGCGGGCTTCCcACACTGCTCTCAAAGgtacatgttttccactctgcccccatctctctgcctcaaacctccttttc Alignment from Spaln_nt2Genome GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTC-CACACTGCTCTCAAAG cccacgcccaactggctgggctaatgtgtttcacttacatctttttacagGTGCTGTTTCCTCTCCTGACCAAGCTCTTGGAAAATATCAGCCCTGCAGATGTGGGTGGGATGGAAGAGACCCGGATGCGGGCTTCCCACACTGCTCTCAAAGgtacatgttttccactctgcccccatctctctgcctcaaacctccttttc Alignment from Pairagon GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTT-CCACACTGCTCTCAAAG cccacgcccaactggctgggctaatgtgtttcacttacatctttttacagGTGCTGTTTCCTCTCCTGACCAAGCTCTTGGAAAATATCAGCCCTGCAGATGTGGGTGGGATGGAAGAGACCCGGATGCGGGCTTCCCACACTGCTCTCAAAGgtacatgttttccactctgcccccatctctctgcctcaaacctccttttc Alignment from Exonerate_protein2genome GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCC-ACACTGCTCTCAAAG cccacgcccaactggctgggctaatgtgtttcacttacatctttttacagGTGCTGTTTCCTCTCCTGACCAAGCTCTTGGAAAATATCAGCCCTGCAGATGTGGGTGGGATGGAAGAGACCCGGATGCGGGCTTCCCACACTGCTCTCAAAGgtacatgttttccactctgcccccatctctctgcctcaaacctccttttc Alignment from Exonerate_coding2genome GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTTCC-ACACTGCTCTCAAAG cccacgcccaactggctgggctaatgtgtttcacttacatctttttacagGTGCTGTTTCCTCTCCTGACCAAGCTCTTGGAAAATATCAGCCCTGCAGATGTGGGTGGGATGGAAGAGACCCGGATGCGGGCTTCCCACACTGCTCTCAAAGgtacatgttttccactctgcccccatctctctgcctcaaacctccttttc Alignment from GeneWise GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCT-TCCACACTGCTCTCAAAG cccacgcccaactggctgggctaatgtgtttcacttacatctttttacagGTGCTGTTTCCTCTCCTGACCAAGCTCTTGGAAAATATCAGCCCTGCAGATGTGGGTGGGATGGAAGAGACCCGGATGCGGGCTTCCCACACTGCTCTCAAAGgtacatgttttccactctgcccccatctctctgcctcaaacctccttttc #### Gbf1_ID9817_36 --> 0 - 0 Original Alignment GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATC-CTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG cgatagaagcctcatctactacccttgtacttgcacattctttcctgcagGTCTTCCTGCAGCATCTGTCTCCATTGTTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTTgtaagacctgccttgagccagttttgtttgagcatttcttctcacactgg Alignment from CESAR GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATC-CTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG cgatagaagcctcatctactacccttgtacttgcacattctttcctgcagGTCTTCCTGCAGCATCTGTCTCCATTGTTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTTgtaagacctgccttgagccagttttgtttgagcatttcttctcacactgg Alignment from Spaln_aa2Genome GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATC-CTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG cgatagaagcctcatctactacccttgtacttgcacattctttcctgcagGTCTTCCTGCAGCATCTGTCTCCATTGTTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCcCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTTgtaagacctgccttgagccagttttgtttgagcatttcttctcacactgg Alignment from Spaln_nt2Genome GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTAT-CCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG cgatagaagcctcatctactacccttgtacttgcacattctttcctgcagGTCTTCCTGCAGCATCTGTCTCCATTGTTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTTgtaagacctgccttgagccagttttgtttgagcatttcttctcacactgg Alignment from Pairagon GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTAT-CCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG cgatagaagcctcatctactacccttgtacttgcacattctttcctgcagGTCTTCCTGCAGCATCTGTCTCCATTGTTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTTgtaagacctgccttgagccagttttgtttgagcatttcttctcacactgg Alignment from Exonerate_protein2genome GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATC-CTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG cgatagaagcctcatctactacccttgtacttgcacattctttcctgcagGTCTTCCTGCAGCATCTGTCTCCATTGTTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTTgtaagacctgccttgagccagttttgtttgagcatttcttctcacactgg Alignment from Exonerate_coding2genome GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATC-CTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG cgatagaagcctcatctactacccttgtacttgcacattctttcctgcagGTCTTCCTGCAGCATCTGTCTCCATTGTTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTTgtaagacctgccttgagccagttttgtttgagcatttcttctcacactgg Alignment from GeneWise GTCTTCCTGCAGCATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATC-CTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTG cgatagaagcctcatctactacccttgtacttgcacattctttcctgcagGTCTTCCTGCAGCATCTGTCTCCATTGTTGTCACTGTCCACCTTTGCTGCCCTGTGGCTCACTATCCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTTgtaagacctgccttgagccagttttgtttgagcatttcttctcacactgg #### Gbf1_ID9819_38 --> 2 - 1 Original Alignment acCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGGATGCCTGGC-CATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTg gtgctgcgagaaagaaacactcagagttattttattttgaatcttaacagacCCCATGCCTGCTGAACCACATAGTCAAAAGCCT---GCATCCACTCACCTAACTTCTGCTGCTGGCGACCCCAGGATGCCTGGCCCATCCACCTCTCCCAGAGATACCCTCGGAAATGGGGGTTTGTggtaagctactcaaagcgctactggaagaagtttaagcaatgtccaatgca Alignment from CESAR acCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGGATGCCTGGC-CATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTg gtgctgcgagaaagaaacactcagagttattttattttgaatcttaacagacCCCATGCCTGCTGAACCACATAGTCAAAAGCCT---GCATCCACTCACCTAACTTCTGCTGCTGGCGACCCCAGGATGCCTGGCCCATCCACCTCTCCCAGAGATACCCTCGGAAATGGGGGTTTGTggtaagctactcaaagcgctactggaagaagtttaagcaatgtccaatgca Alignment from Spaln_aa2Genome ACCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGGATGCCTGGC-CATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTG gtgctgcgagaaagaaacactcagagttattttattttgaatcttaacagACCCCATGCCTGCTGAACCACATAGTCAAAAGCCT---GCATCCACTCACCTAACTTCTGCTGCTGGCGACCCCAGGATGCCTGGCcCATCCACCTCTCCCAGAGATACCCTCGGAAATGGGGGTTTGTGgtaagctactcaaagcgctactggaagaagtttaagcaatgtccaatgca Alignment from Spaln_nt2Genome ACCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGGATGCCTGG-CCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTG gtgctgcgagaaagaaacactcagagttattttattttgaatcttaacagACCCCATGCCTGCTGAACCACATAGTCAAAAGCCT---GCATCCACTCACCTAACTTCTGCTGCTGGCGACCCCAGGATGCCTGGCCCATCCACCTCTCCCAGAGATACCCTCGGAAATGGGGGTTTGTGgtaagctactcaaagcgctactggaagaagtttaagcaatgtccaatgca Alignment from Pairagon ACCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGGATGCCTGG-CCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTG gtgctgcgagaaagaaacactcagagttattttattttgaatcttaacagACCCCATGCCTGCTGAACCACATAGTCAAAAGCCT---GCATCCACTCACCTAACTTCTGCTGCTGGCGACCCCAGGATGCCTGGCCCATCCACCTCTCCCAGAGATACCCTCGGAAATGGGGGTTTGTGgtaagctactcaaagcgctactggaagaagtttaagcaatgtccaatgca Alignment from Exonerate_protein2genome ACCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGGATGCCTGGC-CATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTG gtgctgcgagaaagaaacactcagagttattttattttgaatcttaacagACCCCATGCCTGCTGAACCACATAGTCAAAAGCCT---GCATCCACTCACCTAACTTCTGCTGCTGGCGACCCCAGGATGCCTGGCCCATCCACCTCTCCCAGAGATACCCTCGGAAATGGGGGTTTGTGgtaagctactcaaagcgctactggaagaagtttaagcaatgtccaatgca Alignment from Exonerate_coding2genome ACCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGGATGCCTGGC-CATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTG gtgctgcgagaaagaaacactcagagttattttattttgaatcttaacagACCCCATGCCTGCTGAACCACATAGTCAAAAGCCT---GCATCCACTCACCTAACTTCTGCTGCTGGCGACCCCAGGATGCCTGGCCCATCCACCTCTCCCAGAGATACCCTCGGAAATGGGGGTTTGTGgtaagctactcaaagcgctactggaagaagtttaagcaatgtccaatgca Alignment from GeneWise ACCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGGATGCCT-GGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTG gtgctgcgagaaagaaacactcagagttattttattttgaatcttaacagACCCCATGCCTGCTGAACCACATAGTCAAAAGCCT---GCATCCACTCACCTAACTTCTGCTGCTGGCGACCCCAGGATGCCTGGCCCATCCACCTCTCCCAGAGATACCCTCGGAAATGGGGGTTTGTGgtaagctactcaaagcgctactggaagaagtttaagcaatgtccaatgca #### Gpr137_ID1887_4 --> 0 - 0 Original Alignment GGGACCAGCGTGTGTCAGGCAGCTGCTATA-GGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagcccccctctctgtaaagatctcgtttttgatgtctccacagGGGACCAGTGTATGTCAGGTGGCTGCCATACGGG---GCCATGGTCCTGCTCTATGCCAGCCGGGCCTGTTATAACCTGGCAGCTCTGGCCTCGGCCCCTCGGAGCCGGCTAGATGCCTTTGATTATGACTGGTACAATGTATCAGACCAGgtgaatactatatagcttgcttctggctgaccaggtccttgccatcagcc Alignment from CESAR GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagcccccctctctgtaaagatctcgtttttgatgtctccacagGGGACCAGTGTATGTCAGGTGGCTGCCATA--CGGGGCCATGGTCCTGCTCTATGCCAGCCGGGCCTGTTATAACCTGGCAGCTCTGGCCTCGGCCCCTCGGAGCCGGCTAGATGCCTTTGATTATGACTGGTACAATGTATCAGACCAGgtgaatactatatagcttgcttctggctgaccaggtccttgccatcagcc Alignment from Spaln_aa2Genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagcccccctctctgtaaagatctcgtttttgatgtctccacagGGGACCAGTGTATGTCAGGTGGCTGCCATAC--GGGGCCATGGTCCTGCTCTATGCCAGCCGGGCCTGTTATAACCTGGCAGCTCTGGCCTCGGCCCCTCGGAGCCGGCTAGATGCCTTTGATTATGACTGGTACAATGTATCAGACCAGgtgaatactatatagcttgcttctggctgaccaggtccttgccatcagcc Alignment from Spaln_nt2Genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagcccccctctctgtaaagatctcgtttttgatgtctccacagGGGACCAGTGTATGTCAGGTGGCTGCCATACGGG--GCCATGGTCCTGCTCTATGCCAGCCGGGCCTGTTATAACCTGGCAGCTCTGGCCTCGGCCCCTCGGAGCCGGCTAGATGCCTTTGATTATGACTGGTACAATGTATCAGACCAGgtgaatactatatagcttgcttctggctgaccaggtccttgccatcagcc Alignment from Pairagon GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagcccccctctctgtaaagatctcgtttttgatgtctccacagGGGACCAGTGTATGTCAGGTGGCTGCCATACGGG--GCCATGGTCCTGCTCTATGCCAGCCGGGCCTGTTATAACCTGGCAGCTCTGGCCTCGGCCCCTCGGAGCCGGCTAGATGCCTTTGATTATGACTGGTACAATGTATCAGACCAGgtgaatactatatagcttgcttctggctgaccaggtccttgccatcagcc Alignment from Exonerate_protein2genome GGGACCAGCGTGTGTCAGGCAGCTGCTATA-GGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagcccccctctctgtaaagatctcgtttttgatgtctccacagGGGACCAGTGTATGTCAGGTGGCTGCCATAC---GGGGCCATGGTCCTGCTCTATGCCAGCCGGGCCTGTTATAACCTGGCAGCTCTGGCCTCGGCCCCTCGGAGCCGGCTAGATGCCTTTGATTATGACTGGTACAATGTATCAGACCAGgtgaatactatatagcttgcttctggctgaccaggtccttgccatcagcc Alignment from Exonerate_coding2genome GGGACCAGCGTGTGTCAGGCAGCTGCTATA-GGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagcccccctctctgtaaagatctcgtttttgatgtctccacagGGGACCAGTGTATGTCAGGTGGCTGCCATAC---GGGGCCATGGTCCTGCTCTATGCCAGCCGGGCCTGTTATAACCTGGCAGCTCTGGCCTCGGCCCCTCGGAGCCGGCTAGATGCCTTTGATTATGACTGGTACAATGTATCAGACCAGgtgaatactatatagcttgcttctggctgaccaggtccttgccatcagcc Alignment from GeneWise GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagcccccctctctgtaaagatctcgtttttgatgtctccacagGGGACCAGTGTATGTCAGGTGGCTGCCATAC--GGGGCCATGGTCCTGCTCTATGCCAGCCGGGCCTGTTATAACCTGGCAGCTCTGGCCTCGGCCCCTCGGAGCCGGCTAGATGCCTTTGATTATGACTGGTACAATGTATCAGACCAGgtgaatactatatagcttgcttctggctgaccaggtccttgccatcagcc #### Gpr137_ID1888_3 --> 1 - 0 Original Alignment gCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTG-CTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG cttgagggagggcatctgtggcctgaggtttgtggttgcttctctgaaaggCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTTCGTTACCTTTTTTTACTGGTGAATGTACTGTGTGCAGTGCTGTCACGCCAGCGTCAAGGACAGCCCTGGATCCTTCTACTGGTGCGCGTCTTGGTGAGTGACTCTCTCTTTGTCATCTGTGCCCTCTCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACTAGTATCTACTTAGAGGCCAAGgtaggtccacccaacatggatgtggcacccttgggtctgtggacggagta Alignment from CESAR gCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTG-CTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG cttgagggagggcatctgtggcctgaggtttgtggttgcttctctgaaaggCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTTCGTTACCTTTTTTTACTGGTGAATGTACTGTGTGCAGTGCTGTCACGCCAGCGTCAAGGACAGCCCTGGATCCTTCTACTGGTGCGCGTCTTGGTGAGTGACTCTCTCTTTGTCATCTGTGCCCTCTCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACTAGTATCTACTTAGAGGCCAAGgtaggtccacccaacatggatgtggcacccttgggtctgtggacggagta Alignment from Spaln_aa2Genome GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGCTCTTT-TTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG cttgagggagggcatctgtggcctgaggtttgtggttgcttctctgaaagGCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTTCGTTACCTTTTtTTACTGGTGAATGTACTGTGTGCAGTGCTGTCACGCCAGCGTCAAGGACAGCCCTGGATCCTTCTACTGGTGCGCGTCTTGGTGAGTGACTCTCTCTTTGTCATCTGTGCCCTCTCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACTAGTATCTACTTAGAGGCCAAGgtaggtccacccaacatggatgtggcacccttgggtctgtggacggagta Alignment from Spaln_nt2Genome GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTGC-TCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG cttgagggagggcatctgtggcctgaggtttgtggttgcttctctgaaagGCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTTCGTTACCTTTTTTTACTGGTGAATGTACTGTGTGCAGTGCTGTCACGCCAGCGTCAAGGACAGCCCTGGATCCTTCTACTGGTGCGCGTCTTGGTGAGTGACTCTCTCTTTGTCATCTGTGCCCTCTCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACTAGTATCTACTTAGAGGCCAAGgtaggtccacccaacatggatgtggcacccttgggtctgtggacggagta Alignment from Pairagon GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTG-CTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG cttgagggagggcatctgtggcctgaggtttgtggttgcttctctgaaagGCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTTCGTTACCTTTTTTTACTGGTGAATGTACTGTGTGCAGTGCTGTCACGCCAGCGTCAAGGACAGCCCTGGATCCTTCTACTGGTGCGCGTCTTGGTGAGTGACTCTCTCTTTGTCATCTGTGCCCTCTCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACTAGTATCTACTTAGAGGCCAAGgtaggtccacccaacatggatgtggcacccttgggtctgtggacggagta Alignment from Exonerate_protein2genome GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTG-CTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG cttgagggagggcatctgtggcctgaggtttgtggttgcttctctgaaagGCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTTCGTTACCTTTTTTTACTGGTGAATGTACTGTGTGCAGTGCTGTCACGCCAGCGTCAAGGACAGCCCTGGATCCTTCTACTGGTGCGCGTCTTGGTGAGTGACTCTCTCTTTGTCATCTGTGCCCTCTCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACTAGTATCTACTTAGAGGCCAAGgtaggtccacccaacatggatgtggcacccttgggtctgtggacggagta Alignment from Exonerate_coding2genome GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTG-CTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG cttgagggagggcatctgtggcctgaggtttgtggttgcttctctgaaagGCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTTCGTTACCTTTTTTTACTGGTGAATGTACTGTGTGCAGTGCTGTCACGCCAGCGTCAAGGACAGCCCTGGATCCTTCTACTGGTGCGCGTCTTGGTGAGTGACTCTCTCTTTGTCATCTGTGCCCTCTCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACTAGTATCTACTTAGAGGCCAAGgtaggtccacccaacatggatgtggcacccttgggtctgtggacggagta Alignment from GeneWise GCTGGCTGTCCGAGGGGCCTTCGTGGGTGCTTCACTG-CTCTTTTTGCTGGTGAATGTACTGTGTGCAGTGCTGTCTCGCCAGCGCCAGGCACAGCCCTGGGTCCTTCTGCTGGTACGTGTCCTGGTGAGCGACTCTCTCTTCGTCATCTGTGCCCTCTCGCTTGCTGCCTGCCTCTGCCTTGTGGCCCGTCGAGCCCCTTCCACCAGCATCTACTTAGAGGCCAAG cttgagggagggcatctgtggcctgaggtttgtggttgcttctctgaaagGCTGGCTGTCCGAGGGGCCTTTGTGGGTGCTTCGTTACCTTTTTTTACTGGTGAATGTACTGTGTGCAGTGCTGTCACGCCAGCGTCAAGGACAGCCCTGGATCCTTCTACTGGTGCGCGTCTTGGTGAGTGACTCTCTCTTTGTCATCTGTGCCCTCTCTCTTGCTGCTTGCCTCTGCCTTGTAGCCCGTCGAGCCCCTTCCACTAGTATCTACTTAGAGGCCAAGgtaggtccacccaacatggatgtggcacccttgggtctgtggacggagta #### Hnrnpul2_ID2399_3 --> 1 - 1 Original Alignment cTCAAAGTCCCCACCACCTCCAGAAGAA-GAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGt ggataagtttcaattatattgcatttgctgggtctcccctccatccccagcTCGAAGTCCCCACCACCTCCAGAGGAACGAAGCTAAAGACGAGGAGGAGGCCCAGACACTTGTCAACCTGGACACAtgtacagataaggattgccttgtttttacagatagagcattgttctgtttt Alignment from CESAR cTCAAAGTCCCCACCACCTCCAGAAGAA-GAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGt ggataagtttcaattatattgcatttgctgggtctcccctccatccccagcTCGAAGTCCCCACCACCTCCAGAGGAACGAAGCTAAAGACGAGGAGGAGGCCCAGACACTTGTCAACCTGGACACAtgtacagataaggattgccttgtttttacagatagagcattgttctgtttt Alignment from Spaln_aa2Genome CTCAAAGTCCCCACCACCTCCAGAAGAA-GAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT ggataagtttcaattatattgcatttgctgggtctcccctccatccccagCTCGAAGTCCCCACCACCTCCAGAGGAAcGAAGCTAAAGACGAGGAGGAGGCCCAGACACTTGTCAACCTGGACACATgtacagataaggattgccttgtttttacagatagagcattgttctgtttt Alignment from Spaln_nt2Genome CTCAAAGTCCCCACCACCTCCAGAAGAA-GAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT ggataagtttcaattatattgcatttgctgggtctcccctccatccccagCTCGAAGTCCCCACCACCTCCAGAGGAACGAAGCTAAAGACGAGGAGGAGGCCCAGACACTTGTCAACCTGGACACATgtacagataaggattgccttgtttttacagatagagcattgttctgtttt Alignment from Pairagon CTCAAAGTCCCCACCACCTCCAGAAGAA-GAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT ggataagtttcaattatattgcatttgctgggtctcccctccatccccagCTCGAAGTCCCCACCACCTCCAGAGGAACGAAGCTAAAGACGAGGAGGAGGCCCAGACACTTGTCAACCTGGACACATgtacagataaggattgccttgtttttacagatagagcattgttctgtttt Alignment from Exonerate_protein2genome CTCAAAGTCCCCACCACCTCCAGAAGAA-GAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT ggataagtttcaattatattgcatttgctgggtctcccctccatccccagCTCGAAGTCCCCACCACCTCCAGAGGAACGAAGCTAAAGACGAGGAGGAGGCCCAGACACTTGTCAACCTGGACACATgtacagataaggattgccttgtttttacagatagagcattgttctgtttt Alignment from Exonerate_coding2genome CTCAAAGTCCCCACCACCTCCAGAAGAA-GAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT ggataagtttcaattatattgcatttgctgggtctcccctccatccccagCTCGAAGTCCCCACCACCTCCAGAGGAACGAAGCTAAAGACGAGGAGGAGGCCCAGACACTTGTCAACCTGGACACATgtacagataaggattgccttgtttttacagatagagcattgttctgtttt Alignment from GeneWise CTCAAAGTCCCCACCACCTCCAGAAGAA-GAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT ggataagtttcaattatattgcatttgctgggtctcccctccatccccagCTCGAAGTCCCCACCACCTCCAGAGGAACGAAGCTAAAGACGAGGAGGAGGCCCAGACACTTGTCAACCTGGACACATgtacagataaggattgccttgtttttacagatagagcattgttctgtttt #### Hnrnpul2_ID2400_4 --> 2 - 0 Original Alignment atACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTA-TGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaagacttctatatcttactcctagatACATCAGATCTCCACTTCCAAATTAGCAAAGACCGATATGGAGGCCAGCCACTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTACTGCTTTGAAGCTAAGgtgagtcattaatttagaccgtgacagagtcctacccaccatttaattag Alignment from CESAR atACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTA-TGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaagacttctatatcttactcctagatACATCAGATCTCCACTTCCAAATTAGCAAAGACCGATATGGAGGCCAGCCACTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTACTGCTTTGAAGCTAAGgtgagtcattaatttagaccgtgacagagtcctacccaccatttaattag Alignment from Spaln_aa2Genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTA-TGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaagacttctatatcttactcctagATACATCAGATCTCCACTTCCAAATTAGCAAAGACCGATATGGAGGCCAGCCACTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTAcTGCTTTGAAGCTAAGgtgagtcattaatttagaccgtgacagagtcctacccaccatttaattag Alignment from Spaln_nt2Genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTA-TGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaagacttctatatcttactcctagATACATCAGATCTCCACTTCCAAATTAGCAAAGACCGATATGGAGGCCAGCCACTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTACTGCTTTGAAGCTAAGgtgagtcattaatttagaccgtgacagagtcctacccaccatttaattag Alignment from Pairagon ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTA-TGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaagacttctatatcttactcctagATACATCAGATCTCCACTTCCAAATTAGCAAAGACCGATATGGAGGCCAGCCACTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTACTGCTTTGAAGCTAAGgtgagtcattaatttagaccgtgacagagtcctacccaccatttaattag Alignment from Exonerate_protein2genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTA-TGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaagacttctatatcttactcctagATACATCAGATCTCCACTTCCAAATTAGCAAAGACCGATATGGAGGCCAGCCACTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTACTGCTTTGAAGCTAAGgtgagtcattaatttagaccgtgacagagtcctacccaccatttaattag Alignment from Exonerate_coding2genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTA-TGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaagacttctatatcttactcctagATACATCAGATCTCCACTTCCAAATTAGCAAAGACCGATATGGAGGCCAGCCACTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTACTGCTTTGAAGCTAAGgtgagtcattaatttagaccgtgacagagtcctacccaccatttaattag Alignment from GeneWise ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAA-GTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaagacttctatatcttactcctagATACATCAGATCTCCACTTCCAAATTAGCAAAGACCGATATGGAGGCCAGCCACTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTACTGCTTTGAAGCTAAGgtgagtcattaatttagaccgtgacagagtcctacccaccatttaattag #### Hnrnpul2_ID2404_8 --> 0 - 0 Original Alignment GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCA-AAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tttataaaattgagtgacttttatttcattgcccttttaaacttgttcagGTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCACAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGGgtaagttgctgagggttggggaagggtgactagtggagacactggaagtc Alignment from CESAR GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCA-AAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tttataaaattgagtgacttttatttcattgcccttttaaacttgttcagGTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCACAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGGgtaagttgctgagggttggggaagggtgactagtggagacactggaagtc Alignment from Spaln_aa2Genome GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCA-AAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tttataaaattgagtgacttttatttcattgcccttttaaacttgttcagGTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAcAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGGgtaagttgctgagggttggggaagggtgactagtggagacactggaagtc Alignment from Spaln_nt2Genome GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCA-AAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tttataaaattgagtgacttttatttcattgcccttttaaacttgttcagGTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCACAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGGgtaagttgctgagggttggggaagggtgactagtggagacactggaagtc Alignment from Pairagon GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCA-AAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tttataaaattgagtgacttttatttcattgcccttttaaacttgttcagGTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCACAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGGgtaagttgctgagggttggggaagggtgactagtggagacactggaagtc Alignment from Exonerate_protein2genome GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCA-AAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tttataaaattgagtgacttttatttcattgcccttttaaacttgttcagGTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCACAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGGgtaagttgctgagggttggggaagggtgactagtggagacactggaagtc Alignment from Exonerate_coding2genome GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCA-AAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tttataaaattgagtgacttttatttcattgcccttttaaacttgttcagGTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCACAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGGgtaagttgctgagggttggggaagggtgactagtggagacactggaagtc Alignment from GeneWise GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATAC-GCAAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tttataaaattgagtgacttttatttcattgcccttttaaacttgttcagGTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCACAAAGACAACCCTGAGAGAAGATACAATGTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGGgtaagttgctgagggttggggaagggtgactagtggagacactggaagtc #### Hnrnpul2_ID2408_12 --> 2 - 0 Original Alignment tgGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCT-GGAAACAGAGGG atttgtttatgcatatgcaacgtaagtcaagctgccaccctcccttccagtgGGTGGGCAGCGCCGAGGCTACGACAACCGGGCCTATGGGCAGCAGTACTGGGGGCAGTCTCGGAAACAGAGGGgtacctgcaggtctccttctactcctccctctgggctgtgaagggtttga Alignment from CESAR tgGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCT-GGAAACAGAGGG atttgtttatgcatatgcaacgtaagtcaagctgccaccctcccttccagtgGGTGGGCAGCGCCGAGGCTACGACAACCGGGCCTATGGGCAGCAGTACTGGGGGCAGTCTCGGAAACAGAGGGgtacctgcaggtctccttctactcctccctctgggctgtgaagggtttga Alignment from Spaln_aa2Genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCT-GGAAACAGAGGG atttgtttatgcatatgcaacgtaagtcaagctgccaccctcccttccagTGGGTGGGCAGCGCCGAGGCTACGACAACCGGGCCTATGGGCAGCAGTACTGGGGGCAGTCTcGGAAACAGAGGGgtacctgcaggtctccttctactcctccctctgggctgtgaagggtttga Alignment from Spaln_nt2Genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCT-GGAAACAGAGGG atttgtttatgcatatgcaacgtaagtcaagctgccaccctcccttccagTGGGTGGGCAGCGCCGAGGCTACGACAACCGGGCCTATGGGCAGCAGTACTGGGGGCAGTCTCGGAAACAGAGGGgtacctgcaggtctccttctactcctccctctgggctgtgaagggtttga Alignment from Pairagon TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCT-GGAAACAGAGGG atttgtttatgcatatgcaacgtaagtcaagctgccaccctcccttccagTGGGTGGGCAGCGCCGAGGCTACGACAACCGGGCCTATGGGCAGCAGTACTGGGGGCAGTCTCGGAAACAGAGGGgtacctgcaggtctccttctactcctccctctgggctgtgaagggtttga Alignment from Exonerate_protein2genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCT-GGAAACAGAGGG atttgtttatgcatatgcaacgtaagtcaagctgccaccctcccttccagTGGGTGGGCAGCGCCGAGGCTACGACAACCGGGCCTATGGGCAGCAGTACTGGGGGCAGTCTCGGAAACAGAGGGgtacctgcaggtctccttctactcctccctctgggctgtgaagggtttga Alignment from Exonerate_coding2genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCT-GGAAACAGAGGG atttgtttatgcatatgcaacgtaagtcaagctgccaccctcccttccagTGGGTGGGCAGCGCCGAGGCTACGACAACCGGGCCTATGGGCAGCAGTACTGGGGGCAGTCTCGGAAACAGAGGGgtacctgcaggtctccttctactcctccctctgggctgtgaagggtttga Alignment from GeneWise TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGGGGGCAG-TCTGGAAACAGAGGG atttgtttatgcatatgcaacgtaagtcaagctgccaccctcccttccagTGGGTGGGCAGCGCCGAGGCTACGACAACCGGGCCTATGGGCAGCAGTACTGGGGGCAGTCTCGGAAACAGAGGGgtacctgcaggtctccttctactcctccctctgggctgtgaagggtttga #### Hnrnpul2_ID2409_13 --> 0 - 0 Original Alignment GGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAACGA-TTCTACAGTCGAGATTATGAGTACAACAGATACAGAGACTATTACAGACAATACAACCGGGAT ttaccctgaagacccataaagcatcgaccggctctctgcatcttttccagGGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAACGACTTCTATAGTCGAGATTATGAGTACAACAGATACAGAGGATATTACAGAGAATACAACCGGGATgtaggcatatgggatagagtgaggatgaaggggacacgatccactggatg Alignment from CESAR GGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAACGA-TTCTACAGTCGAGATTATGAGTACAACAGATACAGAGACTATTACAGACAATACAACCGGGAT ttaccctgaagacccataaagcatcgaccggctctctgcatcttttccagGGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAACGACTTCTATAGTCGAGATTATGAGTACAACAGATACAGAGGATATTACAGAGAATACAACCGGGATgtaggcatatgggatagagtgaggatgaaggggacacgatccactggatg Alignment from Spaln_aa2Genome GGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAACGA-TTCTACAGTCGAGATTATGAGTACAACAGATACAGAGACTATTACAGACAATACAACCGGGAT ttaccctgaagacccataaagcatcgaccggctctctgcatcttttccagGGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAACGAcTTCTATAGTCGAGATTATGAGTACAACAGATACAGAGGATATTACAGAGAATACAACCGGGATgtaggcatatgggatagagtgaggatgaaggggacacgatccactggatg Alignment from Spaln_nt2Genome GGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAACGA-TTCTACAGTCGAGATTATGAGTACAACAGATACAGAGACTATTACAGACAATACAACCGGGAT ttaccctgaagacccataaagcatcgaccggctctctgcatcttttccagGGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAACGACTTCTATAGTCGAGATTATGAGTACAACAGATACAGAGGATATTACAGAGAATACAACCGGGATgtaggcatatgggatagagtgaggatgaaggggacacgatccactggatg Alignment from Pairagon GGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAACGA-TTCTACAGTCGAGATTATGAGTACAACAGATACAGAGACTATTACAGACAATACAACCGGGAT ttaccctgaagacccataaagcatcgaccggctctctgcatcttttccagGGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAACGACTTCTATAGTCGAGATTATGAGTACAACAGATACAGAGGATATTACAGAGAATACAACCGGGATgtaggcatatgggatagagtgaggatgaaggggacacgatccactggatg Alignment from Exonerate_protein2genome GGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAACGA-TTCTACAGTCGAGATTATGAGTACAACAGATACAGAGACTATTACAGACAATACAACCGGGAT ttaccctgaagacccataaagcatcgaccggctctctgcatcttttccagGGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAACGACTTCTATAGTCGAGATTATGAGTACAACAGATACAGAGGATATTACAGAGAATACAACCGGGATgtaggcatatgggatagagtgaggatgaaggggacacgatccactggatg Alignment from Exonerate_coding2genome GGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAACGA-TTCTACAGTCGAGATTATGAGTACAACAGATACAGAGACTATTACAGACAATACAACCGGGAT ttaccctgaagacccataaagcatcgaccggctctctgcatcttttccagGGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAACGACTTCTATAGTCGAGATTATGAGTACAACAGATACAGAGGATATTACAGAGAATACAACCGGGATgtaggcatatgggatagagtgaggatgaaggggacacgatccactggatg Alignment from GeneWise GGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAA-CGATTCTACAGTCGAGATTATGAGTACAACAGATACAGAGACTATTACAGACAATACAACCGGGAT ttaccctgaagacccataaagcatcgaccggctctctgcatcttttccagGGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAACGACTTCTATAGTCGAGATTATGAGTACAACAGATACAGAGGATATTACAGAGAATACAACCGGGATgtaggcatatgggatagagtgaggatgaaggggacacgatccactggatg #### Hps1_ID8614_14 --> 1 - 2 Original Alignment gGAGAGGCTTCTG-GACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGtc agggcacataaacaactgcccctgcctattctctcctccccatcttacaggGAGAGGCTTCTGCGACTGGAAGGACTTCTCGCTGGTGAATAGCTGGAGAAATGTCACCATGGTTtcgtgagttcttgatatattctgaagctagacatatgtgtcccaccatggtg Alignment from CESAR gGAGAGGCTTCTG-GACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGtc agggcacataaacaactgcccctgcctattctctcctccccatcttacaggGAGAGGCTTCTGCGACTGGAAGGACTTCTCGCTGGTGAATAGCTGGAGAAATGTCACCATGGTTtcgtgagttcttgatatattctgaagctagacatatgtgtcccaccatggtg Alignment from Spaln_aa2Genome GGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGTC agggcacataaacaactgcccctgcctattctctcctccccatcttacagggagAGGC---TTCTGCGACTGGAAGGACTTCTCGCTGGTGAATAGCTGGAGAAATGTCACCATGGTTTCgtgagttcttgatatattctgaagctagacatatgtgtcccaccatggtg Alignment from Spaln_nt2Genome GGAGAGGCTTCTG-GACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGTC agggcacataaacaactgcccctgcctattctctcctccccatcttacagGGAGAGGCTTCTGCGACTGGAAGGACTTCTCGCTGGTGAATAGCTGGAGAAATGTCACCATGGTTTCgtgagttcttgatatattctgaagctagacatatgtgtcccaccatggtg Alignment from Pairagon GGAGAGGCTTCTG-GACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGTC agggcacataaacaactgcccctgcctattctctcctccccatcttacagGGAGAGGCTTCTGCGACTGGAAGGACTTCTCGCTGGTGAATAGCTGGAGAAATGTCACCATGGTTTCgtgagttcttgatatattctgaagctagacatatgtgtcccaccatggtg Alignment from Exonerate_protein2genome GGAGAGGCTTCTG-GACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGTC agggcacataaacaactgcccctgcctattctctcctccccatcttacagGGAGAGGCTTCTGCGACTGGAAGGACTTCTCGCTGGTGAATAGCTGGAGAAATGTCACCATGGTTTCgtgagttcttgatatattctgaagctagacatatgtgtcccaccatggtg Alignment from Exonerate_coding2genome GGAGAGGCTTCTG-GACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGTC agggcacataaacaactgcccctgcctattctctcctccccatcttacagGGAGAGGCTTCTGCGACTGGAAGGACTTCTCGCTGGTGAATAGCTGGAGAAATGTCACCATGGTTTCgtgagttcttgatatattctgaagctagacatatgtgtcccaccatggtg Alignment from GeneWise -AGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGTC agggcacataaacaactgcccctgcctattctctcctccccatcttacagggagAGGCTTCTGCGACTGGAAGGACTTCTCGCTGGTGAATAGCTGGAGAAATGTCACCATGGTTTCgtgagttcttgatatattctgaagctagacatatgtgtcccaccatggtg #### Hps1_ID8615_13 --> 1 - 2 Original Alignment gCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTG-GTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGaa ccgtattgtgtggtggggagctctatgtgtggtttgtctttcccttgcaggTTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGCGTCACTGCACCCAGCAGAGGAGGACCACACCTACCCCAGCACCTACAGGACCAAGCCCAGAAACTTATGaagtaaacgtgtcatgcttgaggaagagatcagtggttagggcacataaaca Alignment from CESAR gCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTG-GTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGaa ccgtattgtgtggtggggagctctatgtgtggtttgtctttcccttgcaggTTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGCGTCACTGCACCCAGCAGAGGAGGACCACACCTACCCCAGCACCTACAGGACCAAGCCCAGAAACTTATGaagtaaacgtgtcatgcttgaggaagagatcagtggttagggcacataaaca Alignment from Spaln_aa2Genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTG-GTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ccgtattgtgtggtggggagctctatgtgtggtttgtctttcccttgcagGTTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGcGTCACTGCACCCAGCAGAGGAGGACCACACCTACCCCAGCACCTACAGGACCAAGCCCAGAAACTTATGAAgtaaacgtgtcatgcttgaggaagagatcagtggttagggcacataaaca Alignment from Spaln_nt2Genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTG-GTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ccgtattgtgtggtggggagctctatgtgtggtttgtctttcccttgcagGTTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGCGTCACTGCACCCAGCAGAGGAGGACCACACCTACCCCAGCACCTACAGGACCAAGCCCAGAAACTTATGAAgtaaacgtgtcatgcttgaggaagagatcagtggttagggcacataaaca Alignment from Pairagon GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTG-GTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ccgtattgtgtggtggggagctctatgtgtggtttgtctttcccttgcagGTTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGCGTCACTGCACCCAGCAGAGGAGGACCACACCTACCCCAGCACCTACAGGACCAAGCCCAGAAACTTATGAAgtaaacgtgtcatgcttgaggaagagatcagtggttagggcacataaaca Alignment from Exonerate_protein2genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTG-GTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ccgtattgtgtggtggggagctctatgtgtggtttgtctttcccttgcagGTTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGCGTCACTGCACCCAGCAGAGGAGGACCACACCTACCCCAGCACCTACAGGACCAAGCCCAGAAACTTATGAAgtaaacgtgtcatgcttgaggaagagatcagtggttagggcacataaaca Alignment from Exonerate_coding2genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTG-GTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ccgtattgtgtggtggggagctctatgtgtggtttgtctttcccttgcagGTTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGCGTCACTGCACCCAGCAGAGGAGGACCACACCTACCCCAGCACCTACAGGACCAAGCCCAGAAACTTATGAAgtaaacgtgtcatgcttgaggaagagatcagtggttagggcacataaaca Alignment from GeneWise GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTG-GTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ccgtattgtgtggtggggagctctatgtgtggtttgtctttcccttgcagGTTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTATCATCTACCGGCTTAGCTTCCTGCGTCACTGCACCCAGCAGAGGAGGACCACACCTACCCCAGCACCTACAGGACCAAGCCCAGAAACTTATGAAgtaaacgtgtcatgcttgaggaagagatcagtggttagggcacataaaca #### Hps1_ID8622_6 --> 1 - 0 Original Alignment cCATGGTGCGAGCACCCTGCGC-CCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG aacactattttagttgcacgctcaccagcctactttttgtttttctttagcCAGGGTGCAAGCACCCTGTGCCCCTGCAGACCTCCTC---------CTCCTGGTGCAGGACCTTCAGCCCTCCCCAGGTACCACAGAGGAGGAGGGGGAGGAGGAAGATAGTGACAGCCCTCAGgtgagtgagcacaagcggaatagggtgacattatcttgctgctctaagat Alignment from CESAR cCATGGTGCGAGCACCCTGCGCCCC-GCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG aacactattttagttgcacgctcaccagcctactttttgtttttctttagcCAGGGTGCAAGCACCCTGTGCCCCTGCAGACCTCCTC---------CTCCTGGTGCAGGACCTTCAGCCCTCCCCAGGTACCACAGAGGAGGAGGGGGAGGAGGAAGATAGTGACAGCCCTCAGgtgagtgagcacaagcggaatagggtgacattatcttgctgctctaagat Alignment from Spaln_aa2Genome CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG aacactattttagttgcacgctcaccagcctactttttgtttttctttagccagGGTGCAAGCACCCTGT---GCCCCTGCAGACCTCCTC---------CTCCTGGTGCAGGACCTTCAGCCCTCCCCAGGTACCACAGAGGAGGAGGGGGAGGAGGAAGATAGTGACAGCCCTCAGgtgagtgagcacaagcggaatagggtgacattatcttgctgctctaagat Alignment from Spaln_nt2Genome CCATGGTGCGAGCACCCTGCGCCCC-GCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG aacactattttagttgcacgctcaccagcctactttttgtttttctttagCCAGGGTGCAAGCACCCTGTGCCCCTGCAGACCTCC---------TCCTCCTGGTGCAGGACCTTCAGCCCTCCCCAGGTACCACAGAGGAGGAGGGGGAGGAGGAAGATAGTGACAGCCCTCAGgtgagtgagcacaagcggaatagggtgacattatcttgctgctctaagat Alignment from Pairagon CCATGGTGCGAGCACCCTGCGCCCC-GCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG aacactattttagttgcacgctcaccagcctactttttgtttttctttagCCAGGGTGCAAGCACCCTGTGCCCCTGCAGACCTCC---------TCCTCCTGGTGCAGGACCTTCAGCCCTCCCCAGGTACCACAGAGGAGGAGGGGGAGGAGGAAGATAGTGACAGCCCTCAGgtgagtgagcacaagcggaatagggtgacattatcttgctgctctaagat Alignment from Exonerate_protein2genome CCATGGTGCGAGCACCCTG-CGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG aacactattttagttgcacgctcaccagcctactttttgtttttctttagCCAGGGTGCAAGCACCCTGTGCCCCTGCAGACCTCCTC---------CTCCTGGTGCAGGACCTTCAGCCCTCCCCAGGTACCACAGAGGAGGAGGGGGAGGAGGAAGATAGTGACAGCCCTCAGgtgagtgagcacaagcggaatagggtgacattatcttgctgctctaagat Alignment from Exonerate_coding2genome CCATGGTGCGAGCACCCTG-CGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG aacactattttagttgcacgctcaccagcctactttttgtttttctttagCCAGGGTGCAAGCACCCTGTGCCCCTGCAGACCTCCTC---------CTCCTGGTGCAGGACCTTCAGCCCTCCCCAGGTACCACAGAGGAGGAGGGGGAGGAGGAAGATAGTGACAGCCCTCAGgtgagtgagcacaagcggaatagggtgacattatcttgctgctctaagat Alignment from GeneWise CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG aacactattttagttgcacgctcaccagcctactttttgtttttctttagccagGGTGCAAGCA---CCCTGTGCCCCTGCAGACCTCCTC---------CTCCTGGTGCAGGACCTTCAGCCCTCCCCAGGTACCACAGAGGAGGAGGGGGAGGAGGAAGATAGTGACAGCCCTCAGgtgagtgagcacaagcggaatagggtgacattatcttgctgctctaagat #### Il33_ID6362_5 --> 2 - 1 Original Alignment acCAGGTGCTACTACGCTACTATGAGTCTCCCTGT-CCTGCAAGTCAATCAg aacttggtagtctcgtctttgttaaacccactttatcaatgtgtttgcagacCAGGTGCTGCTATGCTACTATGAGTCACCCTGTCCCTGCAAGTCAATCCggtaggttaataggcagcaggagagaatggtgtttaggttgttaacaaagc Alignment from CESAR acCAGGTGCTACTACGCTACTATGAGTCTCCCTGT-CCTGCAAGTCAATCAg aacttggtagtctcgtctttgttaaacccactttatcaatgtgtttgcagacCAGGTGCTGCTATGCTACTATGAGTCACCCTGTCCCTGCAAGTCAATCCggtaggttaataggcagcaggagagaatggtgtttaggttgttaacaaagc Alignment from Spaln_aa2Genome ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCT-GCAAGTCAATCAG aacttggtagtctcgtctttgttaaacccactttatcaatgtgtttgcagACCAGGTGCTGCTATGCTACTATGAGTCACCCTGTCCCtGCAAGTCAATCCGgtaggttaataggcagcaggagagaatggtgtttaggttgttaacaaagc Alignment from Spaln_nt2Genome ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCC-TGCAAGTCAATCAG aacttggtagtctcgtctttgttaaacccactttatcaatgtgtttgcagACCAGGTGCTGCTATGCTACTATGAGTCACCCTGTCCCTGCAAGTCAATCCGgtaggttaataggcagcaggagagaatggtgtttaggttgttaacaaagc Alignment from Pairagon ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGT-CCTGCAAGTCAATCAG aacttggtagtctcgtctttgttaaacccactttatcaatgtgtttgcagACCAGGTGCTGCTATGCTACTATGAGTCACCCTGTCCCTGCAAGTCAATCCGgtaggttaataggcagcaggagagaatggtgtttaggttgttaacaaagc Alignment from Exonerate_protein2genome ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGT-CCTGCAAGTCAATCAG aacttggtagtctcgtctttgttaaacccactttatcaatgtgtttgcagACCAGGTGCTGCTATGCTACTATGAGTCACCCTGTCCCTGCAAGTCAATCCGgtaggttaataggcagcaggagagaatggtgtttaggttgttaacaaagc Alignment from Exonerate_coding2genome ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGT-CCTGCAAGTCAATCAG aacttggtagtctcgtctttgttaaacccactttatcaatgtgtttgcagACCAGGTGCTGCTATGCTACTATGAGTCACCCTGTCCCTGCAAGTCAATCCGgtaggttaataggcagcaggagagaatggtgtttaggttgttaacaaagc Alignment from GeneWise ACCAGGTGCTACTACGCTACTATGAGTCTCCCTGTCCT-GCAAGTCAATCAG aacttggtagtctcgtctttgttaaacccactttatcaatgtgtttgcagACCAGGTGCTGCTATGCTACTATGAGTCACCCTGTCCCTGCAAGTCAATCCGgtaggttaataggcagcaggagagaatggtgtttaggttgttaacaaagc #### Incenp_ID2604_15 --> 0 - 0 Original Alignment GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTG-GCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagcggtgtggcaagaggagaggtaattttttctttctttcccagGAAGAGCAACAGCGCCTGGCTAAGCAGCAACCGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGCGCAGCAGCCAGGAAAGTCCTCAACATGACTGTGGATGTGCGGgtaagtcctgcacccctattcagatgggttcttactccatgcttcattta Alignment from CESAR GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTG-GCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagcggtgtggcaagaggagaggtaattttttctttctttcccagGAAGAGCAACAGCGCCTGGCTAAGCAGCAACCGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGCGCAGCAGCCAGGAAAGTCCTCAACATGACTGTGGATGTGCGGgtaagtcctgcacccctattcagatgggttcttactccatgcttcattta Alignment from Spaln_aa2Genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTG-GCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagcggtgtggcaagaggagaggtaattttttctttctttcccagGAAGAGCAACAGCGCCTGGCTAAGCAGCAACCGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGcGCAGCAGCCAGGAAAGTCCTCAACATGACTGTGGATGTGCGGgtaagtcctgcacccctattcagatgggttcttactccatgcttcattta Alignment from Spaln_nt2Genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTG-GCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagcggtgtggcaagaggagaggtaattttttctttctttcccagGAAGAGCAACAGCGCCTGGCTAAGCAGCAACCGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGCGCAGCAGCCAGGAAAGTCCTCAACATGACTGTGGATGTGCGGgtaagtcctgcacccctattcagatgggttcttactccatgcttcattta Alignment from Pairagon GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTG-GCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagcggtgtggcaagaggagaggtaattttttctttctttcccagGAAGAGCAACAGCGCCTGGCTAAGCAGCAACCGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGCGCAGCAGCCAGGAAAGTCCTCAACATGACTGTGGATGTGCGGgtaagtcctgcacccctattcagatgggttcttactccatgcttcattta Alignment from Exonerate_protein2genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTG-GCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagcggtgtggcaagaggagaggtaattttttctttctttcccagGAAGAGCAACAGCGCCTGGCTAAGCAGCAACCGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGCGCAGCAGCCAGGAAAGTCCTCAACATGACTGTGGATGTGCGGgtaagtcctgcacccctattcagatgggttcttactccatgcttcattta Alignment from Exonerate_coding2genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTG-GCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagcggtgtggcaagaggagaggtaattttttctttctttcccagGAAGAGCAACAGCGCCTGGCTAAGCAGCAACCGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGCGCAGCAGCCAGGAAAGTCCTCAACATGACTGTGGATGTGCGGgtaagtcctgcacccctattcagatgggttcttactccatgcttcattta Alignment from GeneWise GAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTG-GCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagcggtgtggcaagaggagaggtaattttttctttctttcccagGAAGAGCAACAGCGCCTGGCTAAGCAGCAACCGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGCGCAGCAGCCAGGAAAGTCCTCAACATGACTGTGGATGTGCGGgtaagtcctgcacccctattcagatgggttcttactccatgcttcattta #### Incenp_ID2614_5 --> 1 - 0 Original Alignment cCTGGAGCAGGAGCCTGTCGAGGTG-GCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG gaggaaactttgacttatgagttctcatttttttttctgactcattttagcCTGGAGCAGGAGCCTGTTGAGGTGCGCTGAACCTGAGGAGGCAGAAGAGGAGCAAGAGgtgagctcacaagccagacatgggtaggatctgactcccccaggcctgtg Alignment from CESAR cCTGGAGCAGGAGCCTGTCGAGGTG-GCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG gaggaaactttgacttatgagttctcatttttttttctgactcattttagcCTGGAGCAGGAGCCTGTTGAGGTGCGCTGAACCTGAGGAGGCAGAAGAGGAGCAAGAGgtgagctcacaagccagacatgggtaggatctgactcccccaggcctgtg Alignment from Spaln_aa2Genome CCTGGAGCAGGAGCCTGTCGAGGTG-GCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG gaggaaactttgacttatgagttctcatttttttttctgactcattttagCCTGGAGCAGGAGCCTGTTGAGGTGcGCTGAACCTGAGGAGGCAGAAGAGGAGCAAGAGgtgagctcacaagccagacatgggtaggatctgactcccccaggcctgtg Alignment from Spaln_nt2Genome CCTGGAGCAGGAGCCTGTCGAGGTG-GCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG gaggaaactttgacttatgagttctcatttttttttctgactcattttagCCTGGAGCAGGAGCCTGTTGAGGTGCGCTGAACCTGAGGAGGCAGAAGAGGAGCAAGAGgtgagctcacaagccagacatgggtaggatctgactcccccaggcctgtg Alignment from Pairagon CCTGGAGCAGGAGCCTGTCGAGGTG-GCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG gaggaaactttgacttatgagttctcatttttttttctgactcattttagCCTGGAGCAGGAGCCTGTTGAGGTGCGCTGAACCTGAGGAGGCAGAAGAGGAGCAAGAGgtgagctcacaagccagacatgggtaggatctgactcccccaggcctgtg Alignment from Exonerate_protein2genome CCTGGAGCAGGAGCCTGTCGAGGTG-GCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG gaggaaactttgacttatgagttctcatttttttttctgactcattttagCCTGGAGCAGGAGCCTGTTGAGGTGCGCTGAACCTGAGGAGGCAGAAGAGGAGCAAGAGgtgagctcacaagccagacatgggtaggatctgactcccccaggcctgtg Alignment from Exonerate_coding2genome CCTGGAGCAGGAGCCTGTCGAGGTG-GCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG gaggaaactttgacttatgagttctcatttttttttctgactcattttagCCTGGAGCAGGAGCCTGTTGAGGTGCGCTGAACCTGAGGAGGCAGAAGAGGAGCAAGAGgtgagctcacaagccagacatgggtaggatctgactcccccaggcctgtg Alignment from GeneWise CCTGGAGCAGGAGCCTGTCGAGGTG-GCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAG gaggaaactttgacttatgagttctcatttttttttctgactcattttagCCTGGAGCAGGAGCCTGTTGAGGTGCGCTGAACCTGAGGAGGCAGAAGAGGAGCAAGAGgtgagctcacaagccagacatgggtaggatctgactcccccaggcctgtg #### Kat5_ID1109_13 --> 1 - 0 Original Alignment tGAGATCAGTGAAATCACTAGT-ATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG agatgaatatcttcaggtgacctaacttgggttctcctcctcttttgtagtGAGATCAGTGAAATCACTAGTCATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAGgtaagtgggcatgctcaggggacaaatgagatcacagcagtacatgatac Alignment from CESAR tGAGATCAGTGAAATCACTAGT-ATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG agatgaatatcttcaggtgacctaacttgggttctcctcctcttttgtagtGAGATCAGTGAAATCACTAGTCATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAGgtaagtgggcatgctcaggggacaaatgagatcacagcagtacatgatac Alignment from Spaln_aa2Genome TGAGATCAGTGAAATCACTAGT-ATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG agatgaatatcttcaggtgacctaacttgggttctcctcctcttttgtagTGAGATCAGTGAAATCACTAGTcATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAGgtaagtgggcatgctcaggggacaaatgagatcacagcagtacatgatac Alignment from Spaln_nt2Genome TGAGATCAGTGAAATCACTAGT-ATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG agatgaatatcttcaggtgacctaacttgggttctcctcctcttttgtagTGAGATCAGTGAAATCACTAGTCATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAGgtaagtgggcatgctcaggggacaaatgagatcacagcagtacatgatac Alignment from Pairagon TGAGATCAGTGAAATCACTAGT-ATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG agatgaatatcttcaggtgacctaacttgggttctcctcctcttttgtagTGAGATCAGTGAAATCACTAGTCATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAGgtaagtgggcatgctcaggggacaaatgagatcacagcagtacatgatac Alignment from Exonerate_protein2genome TGAGATCAGTGAAATCACTAGT-ATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG agatgaatatcttcaggtgacctaacttgggttctcctcctcttttgtagTGAGATCAGTGAAATCACTAGTCATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAGgtaagtgggcatgctcaggggacaaatgagatcacagcagtacatgatac Alignment from Exonerate_coding2genome TGAGATCAGTGAAATCACTAGT-ATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG agatgaatatcttcaggtgacctaacttgggttctcctcctcttttgtagTGAGATCAGTGAAATCACTAGTCATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAGgtaagtgggcatgctcaggggacaaatgagatcacagcagtacatgatac Alignment from GeneWise TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG agatgaatatcttcaggtgacctaacttgggttctcctcctcttttgtagtgagATCAGTGAAATCACTAGTC---ATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAGgtaagtgggcatgctcaggggacaaatgagatcacagcagtacatgatac #### Kat5_ID1110_12 --> 2 - 2 Original Alignment gcTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCG-GAGAGCGGGGAGAGGCCACAGATCACCATCaa aagcttccatgtacatgtgatgcttacttggtctgtttttctttccccaggcTATGAACTCTCGAAAGTAGACGGGAAGACCGGAACTCCTGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGCGAGAGTGGGGAGAGGCCACAGATCACCATCaagtgaaatgaaatgccaacctgggggttgtggtatggcctatctgtttctg Alignment from CESAR gcTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCG-GAGAGCGGGGAGAGGCCACAGATCACCATCaa aagcttccatgtacatgtgatgcttacttggtctgtttttctttccccaggcTATGAACTCTCGAAAGTAGACGGGAAGACCGGAACTCCTGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGCGAGAGTGGGGAGAGGCCACAGATCACCATCaagtgaaatgaaatgccaacctgggggttgtggtatggcctatctgtttctg Alignment from Spaln_aa2Genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCG-GAGAGCGGGGAGAGGCCACAGATCACCATCAA aagcttccatgtacatgtgatgcttacttggtctgtttttctttccccagGCTATGAACTCTCGAAAGTAGACGGGAAGACCGGAACTCCTGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGcGAGAGTGGGGAGAGGCCACAGATCACCATCAAgtgaaatgaaatgccaacctgggggttgtggtatggcctatctgtttctg Alignment from Spaln_nt2Genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCG-GAGAGCGGGGAGAGGCCACAGATCACCATCAA aagcttccatgtacatgtgatgcttacttggtctgtttttctttccccagGCTATGAACTCTCGAAAGTAGACGGGAAGACCGGAACTCCTGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGCGAGAGTGGGGAGAGGCCACAGATCACCATCAAgtgaaatgaaatgccaacctgggggttgtggtatggcctatctgtttctg Alignment from Pairagon GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCG-GAGAGCGGGGAGAGGCCACAGATCACCATCAA aagcttccatgtacatgtgatgcttacttggtctgtttttctttccccagGCTATGAACTCTCGAAAGTAGACGGGAAGACCGGAACTCCTGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGCGAGAGTGGGGAGAGGCCACAGATCACCATCAAgtgaaatgaaatgccaacctgggggttgtggtatggcctatctgtttctg Alignment from Exonerate_protein2genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCG-GAGAGCGGGGAGAGGCCACAGATCACCATCAA aagcttccatgtacatgtgatgcttacttggtctgtttttctttccccagGCTATGAACTCTCGAAAGTAGACGGGAAGACCGGAACTCCTGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGCGAGAGTGGGGAGAGGCCACAGATCACCATCAAgtgaaatgaaatgccaacctgggggttgtggtatggcctatctgtttctg Alignment from Exonerate_coding2genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCG-GAGAGCGGGGAGAGGCCACAGATCACCATCAA aagcttccatgtacatgtgatgcttacttggtctgtttttctttccccagGCTATGAACTCTCGAAAGTAGACGGGAAGACCGGAACTCCTGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGCGAGAGTGGGGAGAGGCCACAGATCACCATCAAgtgaaatgaaatgccaacctgggggttgtggtatggcctatctgtttctg Alignment from GeneWise GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAG-TCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA aagcttccatgtacatgtgatgcttacttggtctgtttttctttccccagGCTATGAACTCTCGAAAGTAGACGGGAAGACCGGAACTCCTGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGCGAGAGTGGGGAGAGGCCACAGATCACCATCAAgtgaaatgaaatgccaacctgggggttgtggtatggcctatctgtttctg #### Kat5_ID1111_11 --> 0 - 1 Original Alignment GAAAAGGAATCCACA-GAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCa ccttatcgcctaacttggcactcttgcactgaactctctgcctgttctagGAAAAAGAGTCCACACGAGGATTACAACATAGCCTGCATCTTAACTCTACCTCCCTACCAGCGCCGGGGCTACGGCAAGCTGCTTATTGAGTTCagtaagaatgtgctacctggccaggatctggcggggtgaggctgggttggt Alignment from CESAR GAAAAGGAATCCACA-GAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCa ccttatcgcctaacttggcactcttgcactgaactctctgcctgttctagGAAAAAGAGTCCACACGAGGATTACAACATAGCCTGCATCTTAACTCTACCTCCCTACCAGCGCCGGGGCTACGGCAAGCTGCTTATTGAGTTCagtaagaatgtgctacctggccaggatctggcggggtgaggctgggttggt Alignment from Spaln_aa2Genome GAAAAGGAATCCACA-GAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA ccttatcgcctaacttggcactcttgcactgaactctctgcctgttctagGAAAAAGAGTCCACAcGAGGATTACAACATAGCCTGCATCTTAACTCTACCTCCCTACCAGCGCCGGGGCTACGGCAAGCTGCTTATTGAGTTCAgtaagaatgtgctacctggccaggatctggcggggtgaggctgggttggt Alignment from Spaln_nt2Genome GAAAAGGAATCCACA-GAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA ccttatcgcctaacttggcactcttgcactgaactctctgcctgttctagGAAAAAGAGTCCACACGAGGATTACAACATAGCCTGCATCTTAACTCTACCTCCCTACCAGCGCCGGGGCTACGGCAAGCTGCTTATTGAGTTCAgtaagaatgtgctacctggccaggatctggcggggtgaggctgggttggt Alignment from Pairagon GAAAAGGAATCCACA-GAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA ccttatcgcctaacttggcactcttgcactgaactctctgcctgttctagGAAAAAGAGTCCACACGAGGATTACAACATAGCCTGCATCTTAACTCTACCTCCCTACCAGCGCCGGGGCTACGGCAAGCTGCTTATTGAGTTCAgtaagaatgtgctacctggccaggatctggcggggtgaggctgggttggt Alignment from Exonerate_protein2genome GAAAAGGAATCCACA-GAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA ccttatcgcctaacttggcactcttgcactgaactctctgcctgttctagGAAAAAGAGTCCACACGAGGATTACAACATAGCCTGCATCTTAACTCTACCTCCCTACCAGCGCCGGGGCTACGGCAAGCTGCTTATTGAGTTCAgtaagaatgtgctacctggccaggatctggcggggtgaggctgggttggt Alignment from Exonerate_coding2genome GAAAAGGAATCCACA-GAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA ccttatcgcctaacttggcactcttgcactgaactctctgcctgttctagGAAAAAGAGTCCACACGAGGATTACAACATAGCCTGCATCTTAACTCTACCTCCCTACCAGCGCCGGGGCTACGGCAAGCTGCTTATTGAGTTCAgtaagaatgtgctacctggccaggatctggcggggtgaggctgggttggt Alignment from GeneWise GAAAAGGAATCCACAGAAGATTACAATGTGGCCTGCATCTTGACTCTGCCTCCCTACCAGCGCCGGGGCTATGGCAAGCTGCTTATTGAGTTCA ccttatcgcctaacttggcactcttgcactgaactctctgcctgttctaggaaaaagAGTCCACAC------GAGGATTACAACATAGCCTGCATCTTAACTCTACCTCCCTACCAGCGCCGGGGCTACGGCAAGCTGCTTATTGAGTTCAgtaagaatgtgctacctggccaggatctggcggggtgaggctgggttggt #### Kat5_ID1115_7 --> 0 - 0 Original Alignment AATGGGTCAGCC-CGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG tcctccagtataatctcacactcacttgcttccatgacctcccttcccagAATGGATCAACCCCGTAGAGCAGTGGCAGCCCAGCCAGGGTGGAAGCGGAAATCTAACTGCTTGGGCACTGATGAGgtaaagctttaggagcagagaggggaaagggggggtgggcttgggcaacg Alignment from CESAR AATGGGTCAGCC-CGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG tcctccagtataatctcacactcacttgcttccatgacctcccttcccagAATGGATCAACCCCGTAGAGCAGTGGCAGCCCAGCCAGGGTGGAAGCGGAAATCTAACTGCTTGGGCACTGATGAGgtaaagctttaggagcagagaggggaaagggggggtgggcttgggcaacg Alignment from Spaln_aa2Genome AATGGGTCAGCC-CGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG tcctccagtataatctcacactcacttgcttccatgacctcccttcccagAATGGATCAACCcCGTAGAGCAGTGGCAGCCCAGCCAGGGTGGAAGCGGAAATCTAACTGCTTGGGCACTGATGAGgtaaagctttaggagcagagaggggaaagggggggtgggcttgggcaacg Alignment from Spaln_nt2Genome AATGGGTCAGCCC-GTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG tcctccagtataatctcacactcacttgcttccatgacctcccttcccagAATGGATCAACCCCGTAGAGCAGTGGCAGCCCAGCCAGGGTGGAAGCGGAAATCTAACTGCTTGGGCACTGATGAGgtaaagctttaggagcagagaggggaaagggggggtgggcttgggcaacg Alignment from Pairagon AATGGGTCAG-CCCGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG tcctccagtataatctcacactcacttgcttccatgacctcccttcccagAATGGATCAACCCCGTAGAGCAGTGGCAGCCCAGCCAGGGTGGAAGCGGAAATCTAACTGCTTGGGCACTGATGAGgtaaagctttaggagcagagaggggaaagggggggtgggcttgggcaacg Alignment from Exonerate_protein2genome AATGGGTCAGCC-CGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG tcctccagtataatctcacactcacttgcttccatgacctcccttcccagAATGGATCAACCCCGTAGAGCAGTGGCAGCCCAGCCAGGGTGGAAGCGGAAATCTAACTGCTTGGGCACTGATGAGgtaaagctttaggagcagagaggggaaagggggggtgggcttgggcaacg Alignment from Exonerate_coding2genome AATGGGTCAGCC-CGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG tcctccagtataatctcacactcacttgcttccatgacctcccttcccagAATGGATCAACCCCGTAGAGCAGTGGCAGCCCAGCCAGGGTGGAAGCGGAAATCTAACTGCTTGGGCACTGATGAGgtaaagctttaggagcagagaggggaaagggggggtgggcttgggcaacg Alignment from GeneWise AATGGGTCA-GCCCGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG tcctccagtataatctcacactcacttgcttccatgacctcccttcccagAATGGATCAACCCCGTAGAGCAGTGGCAGCCCAGCCAGGGTGGAAGCGGAAATCTAACTGCTTGGGCACTGATGAGgtaaagctttaggagcagagaggggaaagggggggtgggcttgggcaacg #### Kat5_ID1116_6 --> 0 - 0 Original Alignment AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACA-GCCCCAGCCTCGGTTTTCCCTCAG gacccaccttctctatcttctgacctgcacccattgtctttattctcaagAAGCGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGTGAGACACGCCGCAGCCTCAGTTTTCCCTCAGgtgactcttcaattcttttttcaagtgccgaaatgttttgtctgcacttt Alignment from CESAR AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACA-GCCCCAGCCTCGGTTTTCCCTCAG gacccaccttctctatcttctgacctgcacccattgtctttattctcaagAAGCGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGTGAGACACGCCGCAGCCTCAGTTTTCCCTCAGgtgactcttcaattcttttttcaagtgccgaaatgttttgtctgcacttt Alignment from Spaln_aa2Genome AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACA-GCCCCAGCCTCGGTTTTCCCTCAG gacccaccttctctatcttctgacctgcacccattgtctttattctcaagAAGCGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGTGAGACAcGCCGCAGCCTCAGTTTTCCCTCAGgtgactcttcaattcttttttcaagtgccgaaatgttttgtctgcacttt Alignment from Spaln_nt2Genome AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACA-GCCCCAGCCTCGGTTTTCCCTCAG gacccaccttctctatcttctgacctgcacccattgtctttattctcaagAAGCGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGTGAGACACGCCGCAGCCTCAGTTTTCCCTCAGgtgactcttcaattcttttttcaagtgccgaaatgttttgtctgcacttt Alignment from Pairagon AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACA-GCCCCAGCCTCGGTTTTCCCTCAG gacccaccttctctatcttctgacctgcacccattgtctttattctcaagAAGCGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGTGAGACACGCCGCAGCCTCAGTTTTCCCTCAGgtgactcttcaattcttttttcaagtgccgaaatgttttgtctgcacttt Alignment from Exonerate_protein2genome AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACA-GCCCCAGCCTCGGTTTTCCCTCAG gacccaccttctctatcttctgacctgcacccattgtctttattctcaagAAGCGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGTGAGACACGCCGCAGCCTCAGTTTTCCCTCAGgtgactcttcaattcttttttcaagtgccgaaatgttttgtctgcacttt Alignment from Exonerate_coding2genome AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACA-GCCCCAGCCTCGGTTTTCCCTCAG gacccaccttctctatcttctgacctgcacccattgtctttattctcaagAAGCGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGTGAGACACGCCGCAGCCTCAGTTTTCCCTCAGgtgactcttcaattcttttttcaagtgccgaaatgttttgtctgcacttt Alignment from GeneWise AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGCGAGACAGCC-CCAGCCTCGGTTTTCCCTCAG gacccaccttctctatcttctgacctgcacccattgtctttattctcaagAAGCGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCCAGTGAGACACGCCGCAGCCTCAGTTTTCCCTCAGgtgactcttcaattcttttttcaagtgccgaaatgttttgtctgcacttt #### Kat5_ID1118_4 --> 2 - 0 Original Alignment tcAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAG-GCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG ggttaaggaaacctctggcattccctcctgactttatattttgctgacagtcAACAAACGTCTGGATGAATGGGTAACCCATGAGCGGCTGGACTTACAGAAGATACAATTACCTAAGAAAGAGCGCCCAGACACCTACCAAGAATGGACTTCCTGGGTCCCGCCCTGGCTCTCCCAAAAGAGAGGTGgtaagtaggttgcccatttcatcttctctctctggtccgtcctgtcttgc Alignment from CESAR tcAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAG-GCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG ggttaaggaaacctctggcattccctcctgactttatattttgctgacagtcAACAAACGTCTGGATGAATGGGTAACCCATGAGCGGCTGGACTTACAGAAGATACAATTACCTAAGAAAGAGCGCCCAGACACCTACCAAGAATGGACTTCCTGGGTCCCGCCCTGGCTCTCCCAAAAGAGAGGTGgtaagtaggttgcccatttcatcttctctctctggtccgtcctgtcttgc Alignment from Spaln_aa2Genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAG-GCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG ggttaaggaaacctctggcattccctcctgactttatattttgctgacagTCAACAAACGTCTGGATGAATGGGTAACCCATGAGCGGCTGGACTTACAGAAGATACAATTACCTAAGAAAGAGcGCCCAGACACCTACCAAGAATGGACTTCCTGGGTCCCGCCCTGGCTCTCCCAAAAGAGAGGTGgtaagtaggttgcccatttcatcttctctctctggtccgtcctgtcttgc Alignment from Spaln_nt2Genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAG-GCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG ggttaaggaaacctctggcattccctcctgactttatattttgctgacagTCAACAAACGTCTGGATGAATGGGTAACCCATGAGCGGCTGGACTTACAGAAGATACAATTACCTAAGAAAGAGCGCCCAGACACCTACCAAGAATGGACTTCCTGGGTCCCGCCCTGGCTCTCCCAAAAGAGAGGTGgtaagtaggttgcccatttcatcttctctctctggtccgtcctgtcttgc Alignment from Pairagon TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAG-GCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG ggttaaggaaacctctggcattccctcctgactttatattttgctgacagTCAACAAACGTCTGGATGAATGGGTAACCCATGAGCGGCTGGACTTACAGAAGATACAATTACCTAAGAAAGAGCGCCCAGACACCTACCAAGAATGGACTTCCTGGGTCCCGCCCTGGCTCTCCCAAAAGAGAGGTGgtaagtaggttgcccatttcatcttctctctctggtccgtcctgtcttgc Alignment from Exonerate_protein2genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAG-GCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG ggttaaggaaacctctggcattccctcctgactttatattttgctgacagTCAACAAACGTCTGGATGAATGGGTAACCCATGAGCGGCTGGACTTACAGAAGATACAATTACCTAAGAAAGAGCGCCCAGACACCTACCAAGAATGGACTTCCTGGGTCCCGCCCTGGCTCTCCCAAAAGAGAGGTGgtaagtaggttgcccatttcatcttctctctctggtccgtcctgtcttgc Alignment from Exonerate_coding2genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAG-GCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG ggttaaggaaacctctggcattccctcctgactttatattttgctgacagTCAACAAACGTCTGGATGAATGGGTAACCCATGAGCGGCTGGACTTACAGAAGATACAATTACCTAAGAAAGAGCGCCCAGACACCTACCAAGAATGGACTTCCTGGGTCCCGCCCTGGCTCTCCCAAAAGAGAGGTGgtaagtaggttgcccatttcatcttctctctctggtccgtcctgtcttgc Alignment from GeneWise TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAAGATCCAATTTCCCAAGAAAGAG-GCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG ggttaaggaaacctctggcattccctcctgactttatattttgctgacagTCAACAAACGTCTGGATGAATGGGTAACCCATGAGCGGCTGGACTTACAGAAGATACAATTACCTAAGAAAGAGCGCCCAGACACCTACCAAGAATGGACTTCCTGGGTCCCGCCCTGGCTCTCCCAAAAGAGAGGTGgtaagtaggttgcccatttcatcttctctctctggtccgtcctgtcttgc #### Kif11_ID7313_3 --> 0 - 2 Original Alignment GTGTTTGGAGCATCT-ACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCgc acttggatgatacaccttcacggtttctattatctctaacttactcatagGTGTTTGGAGCATCTCACAAAACAGATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTAATTATGGGCTATAATTGTACCATCTCCgcgtaagaaaaacaacttttcaagtttagaagatatgtatgtgtgtatatgc Alignment from CESAR GTGTTTGGAGCATCT-ACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCgc acttggatgatacaccttcacggtttctattatctctaacttactcatagGTGTTTGGAGCATCTCACAAAACAGATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTAATTATGGGCTATAATTGTACCATCTCCgcgtaagaaaaacaacttttcaagtttagaagatatgtatgtgtgtatatgc Alignment from Spaln_aa2Genome GCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC acttggatgatacaccttcacggtttctattatctctaacttactcataggtgtttggagCATCTCACAAAACAGATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTAATTATGGGCTATAATTGTACCATCTCCGCgtaagaaaaacaacttttcaagtttagaagatatgtatgtgtgtatatgc Alignment from Spaln_nt2Genome GTGTTTGGAGCATCT-ACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC acttggatgatacaccttcacggtttctattatctctaacttactcatagGTGTTTGGAGCATCTCACAAAACAGATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTAATTATGGGCTATAATTGTACCATCTCCGCgtaagaaaaacaacttttcaagtttagaagatatgtatgtgtgtatatgc Alignment from Pairagon GTGTTTGGAGCATCT-ACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC acttggatgatacaccttcacggtttctattatctctaacttactcatagGTGTTTGGAGCATCTCACAAAACAGATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTAATTATGGGCTATAATTGTACCATCTCCGCgtaagaaaaacaacttttcaagtttagaagatatgtatgtgtgtatatgc Alignment from Exonerate_protein2genome GTGTTTGGAGCATCT-ACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC acttggatgatacaccttcacggtttctattatctctaacttactcatagGTGTTTGGAGCATCTCACAAAACAGATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTAATTATGGGCTATAATTGTACCATCTCCGCgtaagaaaaacaacttttcaagtttagaagatatgtatgtgtgtatatgc Alignment from Exonerate_coding2genome GTGTTTGGAGCATCT-ACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC acttggatgatacaccttcacggtttctattatctctaacttactcatagGTGTTTGGAGCATCTCACAAAACAGATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTAATTATGGGCTATAATTGTACCATCTCCGCgtaagaaaaacaacttttcaagtttagaagatatgtatgtgtgtatatgc Alignment from GeneWise GCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC acttggatgatacaccttcacggtttctattatctctaacttactcataggtgtttggagCATCTCACAAAACAGATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTAATTATGGGCTATAATTGTACCATCTCCGCgtaagaaaaacaacttttcaagtttagaagatatgtatgtgtgtatatgc #### Kif20b_ID6998_3 --> 0 - 0 Original Alignment GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCT-CAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tttcgctttcttccataaatgcaatttcccccatccacttgcatccacag------GTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCCAAAGTATCCTTGGACACTTAAGTGAGAAAAGCTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAGgtgagtagtgccctgttagactgagaaagccaaaagagaactaacagcat Alignment from CESAR GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCT-CAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tttcgctttcttccataaatgcaatttcccccatccacttgcatccacag------GTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCCAAAGTATCCTTGGACACTTAAGTGAGAAAAGCTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAGgtgagtagtgccctgttagactgagaaagccaaaagagaactaacagcat Alignment from Spaln_aa2Genome GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCT-CAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tttcgctttcttccataaatgcaatttcccccatccacttgcatccacag------GTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTcCAAAGTATCCTTGGACACTTAAGTGAGAAAAGCTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAGgtgagtagtgccctgttagactgagaaagccaaaagagaactaacagcat Alignment from Spaln_nt2Genome TGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCT-CAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tttcgctttcttccataaatgcaatttcccccatccacttgcatccacag-GTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCCAAAGTATCCTTGGACACTTAAGTGAGAAAAGCTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAGgtgagtagtgccctgttagactgagaaagccaaaagagaactaacagcat Alignment from Pairagon GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCT-CAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tttcgctttcttccataaatgcaatttcccccatccacttgcatccacag------GTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCCAAAGTATCCTTGGACACTTAAGTGAGAAAAGCTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAGgtgagtagtgccctgttagactgagaaagccaaaagagaactaacagcat Alignment from Exonerate_protein2genome GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCT-CAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tttcgctttcttccataaatgcaatttcccccatccacttgcatCCACAGGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCCAAAGTATCCTTGGACACTTAAGTGAGAAAAGCTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAGgtgagtagtgccctgttagactgagaaagccaaaagagaactaacagcat Alignment from Exonerate_coding2genome GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCT-CAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tttcgctttcttccataaatgcaatttcccccatccacttgcatCCACAGGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCCAAAGTATCCTTGGACACTTAAGTGAGAAAAGCTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAGgtgagtagtgccctgttagactgagaaagccaaaagagaactaacagcat Alignment from GeneWise ---CAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCT-CAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tttcgctttcttccataaatgcaatttcccccatccacttgcatccacagGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCCAAAGTATCCTTGGACACTTAAGTGAGAAAAGCTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAGgtgagtagtgccctgttagactgagaaagccaaaagagaactaacagcat #### Kif20b_ID7005_10 --> 1 - 2 Original Alignment aTTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCT-TTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAaa cgaaatgaaaaattttgcagtactgttgaaattcttatctttctgtctagaTTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACGTCCCTTATTGACCCTGGGAATGTGTGTCAATGTTTTGAAGAACAGTGAAAAGTCAaagtatgagtccttagtgtaattataaaaatctaactttgtgttctttggaa Alignment from CESAR aTTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCT-TTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAaa cgaaatgaaaaattttgcagtactgttgaaattcttatctttctgtctagaTTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACGTCCCTTATTGACCCTGGGAATGTGTGTCAATGTTTTGAAGAACAGTGAAAAGTCAaagtatgagtccttagtgtaattataaaaatctaactttgtgttctttggaa Alignment from Spaln_aa2Genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCTTTA-TTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cgaaatgaaaaattttgcagtactgttgaaattcttatctttctgtctagATTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACGTCCCTTaTTGACCCTGGGAATGTGTGTCAATGTTTTGAAGAACAGTGAAAAGTCAAAgtatgagtccttagtgtaattataaaaatctaactttgtgttctttggaa Alignment from Spaln_nt2Genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCT-TTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cgaaatgaaaaattttgcagtactgttgaaattcttatctttctgtctagATTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACGTCCCTTATTGACCCTGGGAATGTGTGTCAATGTTTTGAAGAACAGTGAAAAGTCAAAgtatgagtccttagtgtaattataaaaatctaactttgtgttctttggaa Alignment from Pairagon ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACAC-TTCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cgaaatgaaaaattttgcagtactgttgaaattcttatctttctgtctagATTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACGTCCCTTATTGACCCTGGGAATGTGTGTCAATGTTTTGAAGAACAGTGAAAAGTCAAAgtatgagtccttagtgtaattataaaaatctaactttgtgttctttggaa Alignment from Exonerate_protein2genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCT-TTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cgaaatgaaaaattttgcagtactgttgaaattcttatctttctgtctagATTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACGTCCCTTATTGACCCTGGGAATGTGTGTCAATGTTTTGAAGAACAGTGAAAAGTCAAAgtatgagtccttagtgtaattataaaaatctaactttgtgttctttggaa Alignment from Exonerate_coding2genome ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACTTCT-TTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cgaaatgaaaaattttgcagtactgttgaaattcttatctttctgtctagATTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACGTCCCTTATTGACCCTGGGAATGTGTGTCAATGTTTTGAAGAACAGTGAAAAGTCAAAgtatgagtccttagtgtaattataaaaatctaactttgtgttctttggaa Alignment from GeneWise ATTGTCTCTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACT-TCTTTATTGACTCTGGGAAAGTGTATCAATGTTTTGAAGAACAGTGAAAAGTCAAA cgaaatgaaaaattttgcagtactgttgaaattcttatctttctgtctagATTGTCACTATGTGATCTTGCTGGTTCAGAACGAAGCATGAAGACACAAAACGAAGGTGAAAGGTTAAGAGAGGCTGGGAATATCAACACGTCCCTTATTGACCCTGGGAATGTGTGTCAATGTTTTGAAGAACAGTGAAAAGTCAAAgtatgagtccttagtgtaattataaaaatctaactttgtgttctttggaa #### Klc2_ID852_14 --> 1 - 0 Original Alignment gATGAAGAGGGCCAGCTCTCTTAACTTCCTTAAC-AAGAGTGTGGAAGAGCCAGTCCAG tcatcatctcatctaatatcaccaaagcctaccttgtggtttttttctaggATGAAGAGGGCCAGCTCTCTTAACTTCCTTAATCAAGAGTGTCAGGGAGCCC---CAGgtgagtatggagggctactgatactaggcagcctagactcacagactcag Alignment from CESAR gATGAAGAGGGCCAGCTCTCTTAACTTCCTTAAC-AAGAGTGTGGAAGAGCCAGTCCAG tcatcatctcatctaatatcaccaaagcctaccttgtggtttttttctaggATGAAGAGGGCCAGCTCTCTTAACTTCCTTAATCAAGAGTGTCAGGGAGCCC---CAGgtgagtatggagggctactgatactaggcagcctagactcacagactcag Alignment from Spaln_aa2Genome GATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAG TGTGGAAGAGCCAGTCCAG tcatcatctcatctaatatcaccaaagcctaccttgtggtttttttctagGATGAAGAGGGCCAGCTCTCTTAACTTCCTTAATCAAGAgtgtcagggagccccaggtgagtatggagggctactgatactaggcagCCTAGACTCACAGACTCAG Alignment from Spaln_nt2Genome GATGAAGAGGGCCAGCTCTCTTAACTTCCTTAA-CAAGAGTGTGGAAGAGCCAGTCCAG tcatcatctcatctaatatcaccaaagcctaccttgtggtttttttctagGATGAAGAGGGCCAGCTCTCTTAACTTCCTTAATCAAGAGTGTCAGGGAGCC---CCAGgtgagtatggagggctactgatactaggcagcctagactcacagactcag Alignment from Pairagon GATGAAGAGGGCCAGCTCTCTTAACTTCCTTAA-CAAGAGTGTGGAAGAGCCAGTCCAG tcatcatctcatctaatatcaccaaagcctaccttgtggtttttttctagGATGAAGAGGGCCAGCTCTCTTAACTTCCTTAATCAAGAGTGTCAGGGAGCC---CCAGgtgagtatggagggctactgatactaggcagcctagactcacagactcag Alignment from Exonerate_protein2genome GATGAAGAGGGCCAGCTCTCTTAACTTCCTTAAC-AAGAGTGTGGAAGAGCCAGTCCAG tcatcatctcatctaatatcaccaaagcctaccttgtggtttttttctagGATGAAGAGGGCCAGCTCTCTTAACTTCCTTAATCAAGAGTGTCAGGGAGCCC---CAGgtgagtatggagggctactgatactaggcagcctagactcacagactcag Alignment from Exonerate_coding2genome GATGAAGAGGGCCAGCTCTCTTAACTTCCTTAAC-AAGAGTGTGGAAGAGCCAGTCCAG tcatcatctcatctaatatcaccaaagcctaccttgtggtttttttctagGATGAAGAGGGCCAGCTCTCTTAACTTCCTTAATCAAGAGTGTCAGGGAGCCC---CAGgtgagtatggagggctactgatactaggcagcctagactcacagactcag Alignment from GeneWise tcatcatctcatctaatatcaccaaagcctaccttgtggtttttttctaggatgaagagggccagctctcttaacttccttaatcaagagtgtcagggagccccaggtgagtatggagggctactgatactaggcagcctagactcacagactcag #### Klc2_ID853_13 --> 0 - 2 Original Alignment GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAG-CTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTag ggcgggctgtaagactaccaagaagggattctttttgttccacattgtagGATGGCAGTGGCTCTCTTCAGCGCAGTGGATCCTTTGGGAAACTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCCTGCAGGGAGGGGGCCCGCAGGAGCCCCCTAATTCTaggtatgctgttagccctcccatccttctgagaacacactatcactagtaag Alignment from CESAR GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAG-CTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTag ggcgggctgtaagactaccaagaagggattctttttgttccacattgtagGATGGCAGTGGCTCTCTTCAGCGCAGTGGATCCTTTGGGAAACTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCCTGCAGGGAGGGGGCCCGCAGGAGCCCCCTAATTCTaggtatgctgttagccctcccatccttctgagaacacactatcactagtaag Alignment from Spaln_aa2Genome GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAG-CTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG ggcgggctgtaagactaccaagaagggattctttttgttccacattgtagGATGGCAGTGGCTCTCTTCAGCGCAGTGGATCCTTTGGGAAACTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGcCTGCAGGGAGGGGGCCCGCAGGAGCCCCCTAATTCTAGgtatgctgttagccctcccatccttctgagaacacactatcactagtaag Alignment from Spaln_nt2Genome GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAG-CTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG ggcgggctgtaagactaccaagaagggattctttttgttccacattgtagGATGGCAGTGGCTCTCTTCAGCGCAGTGGATCCTTTGGGAAACTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCCTGCAGGGAGGGGGCCCGCAGGAGCCCCCTAATTCTAGgtatgctgttagccctcccatccttctgagaacacactatcactagtaag Alignment from Pairagon GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAG-CTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG ggcgggctgtaagactaccaagaagggattctttttgttccacattgtagGATGGCAGTGGCTCTCTTCAGCGCAGTGGATCCTTTGGGAAACTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCCTGCAGGGAGGGGGCCCGCAGGAGCCCCCTAATTCTAGgtatgctgttagccctcccatccttctgagaacacactatcactagtaag Alignment from Exonerate_protein2genome GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAG-CTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG ggcgggctgtaagactaccaagaagggattctttttgttccacattgtagGATGGCAGTGGCTCTCTTCAGCGCAGTGGATCCTTTGGGAAACTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCCTGCAGGGAGGGGGCCCGCAGGAGCCCCCTAATTCTAGgtatgctgttagccctcccatccttctgagaacacactatcactagtaag Alignment from Exonerate_coding2genome GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAG-CTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG ggcgggctgtaagactaccaagaagggattctttttgttccacattgtagGATGGCAGTGGCTCTCTTCAGCGCAGTGGATCCTTTGGGAAACTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCCTGCAGGGAGGGGGCCCGCAGGAGCCCCCTAATTCTAGgtatgctgttagccctcccatccttctgagaacacactatcactagtaag Alignment from GeneWise GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAG-CTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG ggcgggctgtaagactaccaagaagggattctttttgttccacattgtagGATGGCAGTGGCTCTCTTCAGCGCAGTGGATCCTTTGGGAAACTCCGGGATGCTCTGAGACGCAGCAGTGAGATGCTGGTGAGGAAGCCTGCAGGGAGGGGGCCCGCAGGAGCCCCCTAATTCTAGgtatgctgttagccctcccatccttctgagaacacactatcactagtaag #### Klc2_ID854_12 --> 0 - 0 Original Alignment GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGA-GATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tacaagacttcatgtgtactttggtcacactttccttggctgtgatacagGGGCTAGATCCTGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAGGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGACGATGTGGTTGGGCCTCAATCTGAGTTGGACCTGGAAGAGTCAGAGCCTGCGGCAGAGTGGAGTGGAgtgagtgtggaaccagaggcgggctgtaagactaccaagaagggaaattt Alignment from CESAR GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGA-GATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tacaagacttcatgtgtactttggtcacactttccttggctgtgatacagGGGCTAGATCCTGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAGGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGACGATGTGGTTGGGCCTCAATCTGAGTTGGACCTGGAAGAGTCAGAGCCTGCGGCAGAGTGGAGTGGAgtgagtgtggaaccagaggcgggctgtaagactaccaagaagggattctt Alignment from Spaln_aa2Genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGA-GATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tacaagacttcatgtgtactttggtcacactttccttggctgtgatacagGGGCTAGATCCTGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAGGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAcGATGTGGTTGGGCCTCAATCTGAGTTGGACCTGGAAGAGTCAGAGCCTGCGGCAGAGTGGAGTGGAgtgagtgtggaaccagaggcgggctgtaagactaccaagaagggaaattt Alignment from Spaln_nt2Genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGA-GATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tacaagacttcatgtgtactttggtcacactttccttggctgtgatacagGGGCTAGATCCTGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAGGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGACGATGTGGTTGGGCCTCAATCTGAGTTGGACCTGGAAGAGTCAGAGCCTGCGGCAGAGTGGAGTGGAgtgagtgtggaaccagaggcgggctgtaagactaccaagaagggaaattt Alignment from Pairagon GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGA-GATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tacaagacttcatgtgtactttggtcacactttccttggctgtgatacagGGGCTAGATCCTGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAGGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGACGATGTGGTTGGGCCTCAATCTGAGTTGGACCTGGAAGAGTCAGAGCCTGCGGCAGAGTGGAGTGGAgtgagtgtggaaccagaggcgggctgtaagactaccaagaagggaaattt Alignment from Exonerate_protein2genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGA-GATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tacaagacttcatgtgtactttggtcacactttccttggctgtgatacagGGGCTAGATCCTGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAGGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGACGATGTGGTTGGGCCTCAATCTGAGTTGGACCTGGAAGAGTCAGAGCCTGCGGCAGAGTGGAGTGGAgtgagtgtggaaccagaggcgggctgtaagactaccaagaagggaaattt Alignment from Exonerate_coding2genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGA-GATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tacaagacttcatgtgtactttggtcacactttccttggctgtgatacagGGGCTAGATCCTGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAGGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGACGATGTGGTTGGGCCTCAATCTGAGTTGGACCTGGAAGAGTCAGAGCCTGCGGCAGAGTGGAGTGGAgtgagtgtggaaccagaggcgggctgtaagactaccaagaagggaaattt Alignment from GeneWise GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGC-AGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tacaagacttcatgtgtactttggtcacactttccttggctgtgatacagGGGCTAGATCCTGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAGGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGACGATGTGGTTGGGCCTCAATCTGAGTTGGACCTGGAAGAGTCAGAGCCTGCGGCAGAGTGGAGTGGAgtgagtgtggaaccagaggcgggctgtaagactaccaagaagggaaattt #### Klc2_ID855_11 --> 1 - 0 Original Alignment tCCCACAGTCAACACCACT-CTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG ggggagaccattgggtttacaacaggatctgactgttttactatttacagcCCTACAGTCAATACCACACTTGCGAAGCTTGGGTGCCCTGTACTGGCGTGAGGGCAAGTTGGAGGCTGCACACACACTGGAAGACTGTGCCAGCCGTAGCCGCAAACAAgtaagtctttcatcgtggaggaggataagtagagacctacaagacttcat Alignment from CESAR tCCCACAGTCAACACCACT-CTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG ggggagaccattgggtttacaacaggatctgactgttttactatttacagcCCTACAGTCAATACCACACTTGCGAAGCTTGGGTGCCCTGTACTGGCGTGAGGGCAAGTTGGAGGCTGCACACACACTGGAAGACTGTGCCAGCCGTAGCCGCAAACAAgtaagtctttcatcgtggaggaggataagtagagacctacaagacttcat Alignment from Spaln_aa2Genome TCCCACAGTCAACACCACT-CTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG ggggagaccattgggtttacaacaggatctgactgttttactatttacagCCCTACAGTCAATACCACAcTTGCGAAGCTTGGGTGCCCTGTACTGGCGTGAGGGCAAGTTGGAGGCTGCACACACACTGGAAGACTGTGCCAGCCGTAGCCGCAAACAAgtaagtctttcatcgtggaggaggataagtagagacctacaagacttcat Alignment from Spaln_nt2Genome TCCCACAGTCAACACCACTCT-GCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG ggggagaccattgggtttacaacaggatctgactgttttactatttacagCCCTACAGTCAATACCACACTTGCGAAGCTTGGGTGCCCTGTACTGGCGTGAGGGCAAGTTGGAGGCTGCACACACACTGGAAGACTGTGCCAGCCGTAGCCGCAAACAAgtaagtctttcatcgtggaggaggataagtagagacctacaagacttcat Alignment from Pairagon TCCCACAGTCAACACCACTC-TGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG ggggagaccattgggtttacaacaggatctgactgttttactatttacagCCCTACAGTCAATACCACACTTGCGAAGCTTGGGTGCCCTGTACTGGCGTGAGGGCAAGTTGGAGGCTGCACACACACTGGAAGACTGTGCCAGCCGTAGCCGCAAACAAgtaagtctttcatcgtggaggaggataagtagagacctacaagacttcat Alignment from Exonerate_protein2genome TCCCACAGTCAACACCACT-CTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG ggggagaccattgggtttacaacaggatctgactgttttactatttacagCCCTACAGTCAATACCACACTTGCGAAGCTTGGGTGCCCTGTACTGGCGTGAGGGCAAGTTGGAGGCTGCACACACACTGGAAGACTGTGCCAGCCGTAGCCGCAAACAAgtaagtctttcatcgtggaggaggataagtagagacctacaagacttcat Alignment from Exonerate_coding2genome TCCCACAGTCAACACCACT-CTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG ggggagaccattgggtttacaacaggatctgactgttttactatttacagCCCTACAGTCAATACCACACTTGCGAAGCTTGGGTGCCCTGTACTGGCGTGAGGGCAAGTTGGAGGCTGCACACACACTGGAAGACTGTGCCAGCCGTAGCCGCAAACAAgtaagtctttcatcgtggaggaggataagtagagacctacaagacttcat Alignment from GeneWise TCCCACAGTCAACACCACT-CTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG ggggagaccattgggtttacaacaggatctgactgttttactatttacagCCCTACAGTCAATACCACACTTGCGAAGCTTGGGTGCCCTGTACTGGCGTGAGGGCAAGTTGGAGGCTGCACACACACTGGAAGACTGTGCCAGCCGTAGCCGCAAACAAgtaagtctttcatcgtggaggaggataagtagagacctacaagacttcat #### Klc2_ID863_3 --> 0 - 1 Original Alignment GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTG-TTTCCCAATGAAGATGAACAGAGCCCAg ccaatacatctgctgctggggccaacaattgccactcttggccattccagGAAGAGAAGGGTGATGTCCCCAAAGACTCCCTCGACGACCTGCTTTCCCAATGAAGATGAACAGAGGTCAggtcagtaggggcaattagctatgagttcagagaagggttatttttagcac Alignment from CESAR GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTG-TTTCCCAATGAAGATGAACAGAGCCCAg ccaatacatctgctgctggggccaacaattgccactcttggccattccagGAAGAGAAGGGTGATGTCCCCAAAGACTCCCTCGACGACCTGCTTTCCCAATGAAGATGAACAGAGGTCAggtcagtaggggcaattagctatgagttcagagaagggttatttttagcac Alignment from Spaln_aa2Genome GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTG-TTTCCCAATGAAGATGAACAGAGCCCAG ccaatacatctgctgctggggccaacaattgccactcttggccattccagGAAGAGAAGGGTGATGTCCCCAAAGACTCCCTCGACGACCTGcTTTCCCAATGAAGATGAACAGAGGTCAGgtcagtaggggcaattagctatgagttcagagaagggttatttttagcac Alignment from Spaln_nt2Genome GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTG-TTTCCCAATGAAGATGAACAGAGCCCAG ccaatacatctgctgctggggccaacaattgccactcttggccattccagGAAGAGAAGGGTGATGTCCCCAAAGACTCCCTCGACGACCTGCTTTCCCAATGAAGATGAACAGAGGTCAGgtcagtaggggcaattagctatgagttcagagaagggttatttttagcac Alignment from Pairagon GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTG-TTTCCCAATGAAGATGAACAGAGCCCAG ccaatacatctgctgctggggccaacaattgccactcttggccattccagGAAGAGAAGGGTGATGTCCCCAAAGACTCCCTCGACGACCTGCTTTCCCAATGAAGATGAACAGAGGTCAGgtcagtaggggcaattagctatgagttcagagaagggttatttttagcac Alignment from Exonerate_protein2genome GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTG-TTTCCCAATGAAGATGAACAGAGCCCAG ccaatacatctgctgctggggccaacaattgccactcttggccattccagGAAGAGAAGGGTGATGTCCCCAAAGACTCCCTCGACGACCTGCTTTCCCAATGAAGATGAACAGAGGTCAGgtcagtaggggcaattagctatgagttcagagaagggttatttttagcac Alignment from Exonerate_coding2genome GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTG-TTTCCCAATGAAGATGAACAGAGCCCAG ccaatacatctgctgctggggccaacaattgccactcttggccattccagGAAGAGAAGGGTGATGTCCCCAAAGACTCCCTCGACGACCTGCTTTCCCAATGAAGATGAACAGAGGTCAGgtcagtaggggcaattagctatgagttcagagaagggttatttttagcac Alignment from GeneWise GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGAC-CTGTTTCCCAATGAAGATGAACAGAGCCCAG ccaatacatctgctgctggggccaacaattgccactcttggccattccagGAAGAGAAGGGTGATGTCCCCAAAGACTCCCTCGACGACCTGCTTTCCCAATGAAGATGAACAGAGGTCAGgtcagtaggggcaattagctatgagttcagagaagggttatttttagcac #### Ldb1_ID9692_8 --> 0 - 0 Original Alignment GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTG-TCCAATTCCACTCTCAACTACCTCCGA tgattttttggtcagatgacctgatatcctgttcctctttcaccattcagGCTCAGGACCCCCAGATGCTAGATCAACTGTCCAAAAACATTACTCGGTGTGGGCTGCTCAAATTCTGCTCTCAACTACTTCCGAgtactgctcagatgaccctgccagcaattatgttctgagccctgggacta Alignment from CESAR GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTG-TCCAATTCCACTCTCAACTACCTCCGA tgattttttggtcagatgacctgatatcctgttcctctttcaccattcagGCTCAGGACCCCCAGATGCTAGATCAACTGTCCAAAAACATTACTCGGTGTGGGCTGCTCAAATTCTGCTCTCAACTACTTCCGAgtactgctcagatgaccctgccagcaattatgttctgagccctgggacta Alignment from Spaln_aa2Genome GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTG-TCCAATTCCACTCTCAACTACCTCCGA tgattttttggtcagatgacctgatatcctgttcctctttcaccattcagGCTCAGGACCCCCAGATGCTAGATCAACTGTCCAAAAACATTACTCGGTGTGGGCTGcTCAAATTCTGCTCTCAACTACTTCCGAgtactgctcagatgaccctgccagcaattatgttctgagccctgggacta Alignment from Spaln_nt2Genome GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTG-TCCAATTCCACTCTCAACTACCTCCGA tgattttttggtcagatgacctgatatcctgttcctctttcaccattcagGCTCAGGACCCCCAGATGCTAGATCAACTGTCCAAAAACATTACTCGGTGTGGGCTGCTCAAATTCTGCTCTCAACTACTTCCGAgtactgctcagatgaccctgccagcaattatgttctgagccctgggacta Alignment from Pairagon GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTG-TCCAATTCCACTCTCAACTACCTCCGA tgattttttggtcagatgacctgatatcctgttcctctttcaccattcagGCTCAGGACCCCCAGATGCTAGATCAACTGTCCAAAAACATTACTCGGTGTGGGCTGCTCAAATTCTGCTCTCAACTACTTCCGAgtactgctcagatgaccctgccagcaattatgttctgagccctgggacta Alignment from Exonerate_protein2genome GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTG-TCCAATTCCACTCTCAACTACCTCCGA tgattttttggtcagatgacctgatatcctgttcctctttcaccattcagGCTCAGGACCCCCAGATGCTAGATCAACTGTCCAAAAACATTACTCGGTGTGGGCTGCTCAAATTCTGCTCTCAACTACTTCCGAgtactgctcagatgaccctgccagcaattatgttctgagccctgggacta Alignment from Exonerate_coding2genome GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTG-TCCAATTCCACTCTCAACTACCTCCGA tgattttttggtcagatgacctgatatcctgttcctctttcaccattcagGCTCAGGACCCCCAGATGCTAGATCAACTGTCCAAAAACATTACTCGGTGTGGGCTGCTCAAATTCTGCTCTCAACTACTTCCGAgtactgctcagatgaccctgccagcaattatgttctgagccctgggacta Alignment from GeneWise GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTG-TCCAATTCCACTCTCAACTACCTCCGA tgattttttggtcagatgacctgatatcctgttcctctttcaccattcagGCTCAGGACCCCCAGATGCTAGATCAACTGTCCAAAAACATTACTCGGTGTGGGCTGCTCAAATTCTGCTCTCAACTACTTCCGAgtactgctcagatgaccctgccagcaattatgttctgagccctgggacta #### Ldb1_ID9694_6 --> 2 - 0 Original Alignment ccATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAG-CACGGCAAACCCATGTTTACCCAG ccactatgagacctctacctgtcctgaaccctccttgctgtttgccgcagccATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTCGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGCCATGGCAAACCCATGTTTACCCAGgtaagtaaaccataaggacagggaaacccaacatgatggccctaggggga Alignment from CESAR ccATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAG-CACGGCAAACCCATGTTTACCCAG ccactatgagacctctacctgtcctgaaccctccttgctgtttgccgcagccATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTCGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGCCATGGCAAACCCATGTTTACCCAGgtaagtaaaccataaggacagggaaacccaacatgatggccctaggggga Alignment from Spaln_aa2Genome CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAG-CACGGCAAACCCATGTTTACCCAG ccactatgagacctctacctgtcctgaaccctccttgctgtttgccgcagCCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTCGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGcCATGGCAAACCCATGTTTACCCAGgtaagtaaaccataaggacagggaaacccaacatgatggccctaggggga Alignment from Spaln_nt2Genome CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGC-ACGGCAAACCCATGTTTACCCAG ccactatgagacctctacctgtcctgaaccctccttgctgtttgccgcagCCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTCGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGCCATGGCAAACCCATGTTTACCCAGgtaagtaaaccataaggacagggaaacccaacatgatggccctaggggga Alignment from Pairagon CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAG-CACGGCAAACCCATGTTTACCCAG ccactatgagacctctacctgtcctgaaccctccttgctgtttgccgcagCCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTCGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGCCATGGCAAACCCATGTTTACCCAGgtaagtaaaccataaggacagggaaacccaacatgatggccctaggggga Alignment from Exonerate_protein2genome CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAG-CACGGCAAACCCATGTTTACCCAG ccactatgagacctctacctgtcctgaaccctccttgctgtttgccgcagCCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTCGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGCCATGGCAAACCCATGTTTACCCAGgtaagtaaaccataaggacagggaaacccaacatgatggccctaggggga Alignment from Exonerate_coding2genome CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAG-CACGGCAAACCCATGTTTACCCAG ccactatgagacctctacctgtcctgaaccctccttgctgtttgccgcagCCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTCGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGCCATGGCAAACCCATGTTTACCCAGgtaagtaaaccataaggacagggaaacccaacatgatggccctaggggga Alignment from GeneWise CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACC-CAGCACGGCAAACCCATGTTTACCCAG ccactatgagacctctacctgtcctgaaccctccttgctgtttgccgcagCCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTCGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGCCATGGCAAACCCATGTTTACCCAGgtaagtaaaccataaggacagggaaacccaacatgatggccctaggggga #### Ldb1_ID9695_5 --> 0 - 1 Original Alignment GAGTGTGACAATCTCTGGTGGGATGCT-TTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATa tgcctgagggatatcttatcaaatccatcttgctctcctcccccttctagGAGTGTGACAATCTCTGGTGGGATGCTCTTCACAACTGAGTTCTTTGAAGATGATGCCATGCTGACCATCACCTTTTGCCTGAAGGATGGGCCAAACAGATATagtaagctatctctgtgggagacactgttacaccttcattgtgtgtttctt Alignment from CESAR GAGTGTGACAATCTCTGGTGGGATGCT-TTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATa tgcctgagggatatcttatcaaatccatcttgctctcctcccccttctagGAGTGTGACAATCTCTGGTGGGATGCTCTTCACAACTGAGTTCTTTGAAGATGATGCCATGCTGACCATCACCTTTTGCCTGAAGGATGGGCCAAACAGATATagtaagctatctctgtgggagacactgttacaccttcattgtgtgtttctt Alignment from Spaln_aa2Genome GAGTGTGACAATCTCTGGTGGGATGCT-TTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA tgcctgagggatatcttatcaaatccatcttgctctcctcccccttctagGAGTGTGACAATCTCTGGTGGGATGCTcTTCACAACTGAGTTCTTTGAAGATGATGCCATGCTGACCATCACCTTTTGCCTGAAGGATGGGCCAAACAGATATAgtaagctatctctgtgggagacactgttacaccttcattgtgtgtttctt Alignment from Spaln_nt2Genome GAGTGTGACAATCTCTGGTGGGATGCT-TTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA tgcctgagggatatcttatcaaatccatcttgctctcctcccccttctagGAGTGTGACAATCTCTGGTGGGATGCTCTTCACAACTGAGTTCTTTGAAGATGATGCCATGCTGACCATCACCTTTTGCCTGAAGGATGGGCCAAACAGATATAgtaagctatctctgtgggagacactgttacaccttcattgtgtgtttctt Alignment from Pairagon GAGTGTGACAATCTCTGGTGGGATGCT-TTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA tgcctgagggatatcttatcaaatccatcttgctctcctcccccttctagGAGTGTGACAATCTCTGGTGGGATGCTCTTCACAACTGAGTTCTTTGAAGATGATGCCATGCTGACCATCACCTTTTGCCTGAAGGATGGGCCAAACAGATATAgtaagctatctctgtgggagacactgttacaccttcattgtgtgtttctt Alignment from Exonerate_protein2genome GAGTGTGACAATCTCTGGTGGGATGCT-TTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA tgcctgagggatatcttatcaaatccatcttgctctcctcccccttctagGAGTGTGACAATCTCTGGTGGGATGCTCTTCACAACTGAGTTCTTTGAAGATGATGCCATGCTGACCATCACCTTTTGCCTGAAGGATGGGCCAAACAGATATAgtaagctatctctgtgggagacactgttacaccttcattgtgtgtttctt Alignment from Exonerate_coding2genome GAGTGTGACAATCTCTGGTGGGATGCT-TTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA tgcctgagggatatcttatcaaatccatcttgctctcctcccccttctagGAGTGTGACAATCTCTGGTGGGATGCTCTTCACAACTGAGTTCTTTGAAGATGATGCCATGCTGACCATCACCTTTTGCCTGAAGGATGGGCCAAACAGATATAgtaagctatctctgtgggagacactgttacaccttcattgtgtgtttctt Alignment from GeneWise GAGTGTGACAATCTCTGGTGGGAT-GCTTTCACAACTGAGTTCTTTGAAGATGACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA tgcctgagggatatcttatcaaatccatcttgctctcctcccccttctagGAGTGTGACAATCTCTGGTGGGATGCTCTTCACAACTGAGTTCTTTGAAGATGATGCCATGCTGACCATCACCTTTTGCCTGAAGGATGGGCCAAACAGATATAgtaagctatctctgtgggagacactgttacaccttcattgtgtgtttctt #### Ldb1_ID9696_4 --> 1 - 0 Original Alignment gAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGG-CTACAGAACTGGACAGAG aggggtggaataccacaactcagctactaactccctttttctttgtgcaggAGGCACACCCCATATGGTAATCAAACTGACTATAGAATATTTGAGCTTAACAAACGGCCTACAGAATTGGACAGAGgtgagtcagggagagaggtccagaggagagtgcctgagggatatcttatc Alignment from CESAR gAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGG-CTACAGAACTGGACAGAG aggggtggaataccacaactcagctactaactccctttttctttgtgcaggAGGCACACCCCATATGGTAATCAAACTGACTATAGAATATTTGAGCTTAACAAACGGCCTACAGAATTGGACAGAGgtgagtcagggagagaggtccagaggagagtgcctgagggatatcttatc Alignment from Spaln_aa2Genome GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGG-CTACAGAACTGGACAGAG aggggtggaataccacaactcagctactaactccctttttctttgtgcagGAGGCACACCCCATATGGTAATCAAACTGACTATAGAATATTTGAGCTTAACAAACGGcCTACAGAATTGGACAGAGgtgagtcagggagagaggtccagaggagagtgcctgagggatatcttatc Alignment from Spaln_nt2Genome GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGG-CTACAGAACTGGACAGAG aggggtggaataccacaactcagctactaactccctttttctttgtgcagGAGGCACACCCCATATGGTAATCAAACTGACTATAGAATATTTGAGCTTAACAAACGGCCTACAGAATTGGACAGAGgtgagtcagggagagaggtccagaggagagtgcctgagggatatcttatc Alignment from Pairagon GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGG-CTACAGAACTGGACAGAG aggggtggaataccacaactcagctactaactccctttttctttgtgcagGAGGCACACCCCATATGGTAATCAAACTGACTATAGAATATTTGAGCTTAACAAACGGCCTACAGAATTGGACAGAGgtgagtcagggagagaggtccagaggagagtgcctgagggatatcttatc Alignment from Exonerate_protein2genome GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGG-CTACAGAACTGGACAGAG aggggtggaataccacaactcagctactaactccctttttctttgtgcagGAGGCACACCCCATATGGTAATCAAACTGACTATAGAATATTTGAGCTTAACAAACGGCCTACAGAATTGGACAGAGgtgagtcagggagagaggtccagaggagagtgcctgagggatatcttatc Alignment from Exonerate_coding2genome GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGG-CTACAGAACTGGACAGAG aggggtggaataccacaactcagctactaactccctttttctttgtgcagGAGGCACACCCCATATGGTAATCAAACTGACTATAGAATATTTGAGCTTAACAAACGGCCTACAGAATTGGACAGAGgtgagtcagggagagaggtccagaggagagtgcctgagggatatcttatc Alignment from GeneWise GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGG-CTACAGAACTGGACAGAG aggggtggaataccacaactcagctactaactccctttttctttgtgcagGAGGCACACCCCATATGGTAATCAAACTGACTATAGAATATTTGAGCTTAACAAACGGCCTACAGAATTGGACAGAGgtgagtcagggagagaggtccagaggagagtgcctgagggatatcttatc #### Ldb1_ID9697_3 --> 1 - 2 Original Alignment cCCAACTCCCATGTAC-CCACCTACATACCTGGAGCCTGGGATCgg agtcagttttctgttccacggttactcttcttcatcttctttgtttctagcCCAACTCCCATGTACCCCACCTACATACCTGGAGCCTGGGATCgggtagggggactgcagtgtgccacgaagcttttcctctgcatgcacctgag Alignment from CESAR agtcagttttctgttccacggttactcttcttcatcttctttgtttctagcccaactcccatgtaccccacctacatacctggagcctgggatcgggtagggggactgcagtgtgccacgaagcttttcctctgcatgcacctgag Alignment from Spaln_aa2Genome agtcagttttctgttccacggttactcttcttcatcttctttgtttctagcccaactcccatgtaccccacctacatacctggagcctgggatcgggtagggggactgcagtgtgccacgaagcttttcctctgcatgcacctgag Alignment from Spaln_nt2Genome TCCCATGTA------CCCACCTACAT-ACCTGGAGCCTGGGATCGG agtcagttttctgttccacggttactcttcttcatcttctttgtttctagCCCAACTCCCATGTACCCCACCTACATACCTGGAGCCTGGGATCGGgtagggggactgcagtgtgccacgaagcttttcctctgcatgcacctgag Alignment from Pairagon agtcagttttctgttccacggttactcttcttcatcttctttgtttctagcccaactcccatgtaccccacctacatacctggagcctgggatcgggtagggggactgcagtgtgccacgaagcttttcctctgcatgcacctgag Alignment from Exonerate_protein2genome agtcagttttctgttccacggttactcttcttcatcttctttgtttctagcccaactcccatgtaccccacctacatacctggagcctgggatcgggtagggggactgcagtgtgccacgaagcttttcctctgcatgcacctgag Alignment from Exonerate_coding2genome agtcagttttctgttccacggttactcttcttcatcttctttgtttctagcccaactcccatgtaccccacctacatacctggagcctgggatcgggtagggggactgcagtgtgccacgaagcttttcctctgcatgcacctgag Alignment from GeneWise agtcagttttctgttccacggttactcttcttcatcttctttgtttctagcccaactcccatgtaccccacctacatacctggagcctgggatcgggtagggggactgcagtgtgccacgaagcttttcctctgcatgcacctgag #### Lipf_ID6846_2 --> 0 - 1 Original Alignment AGTCAGATGATAACTTACTGGGGA-TATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCg attaaacttcttcttagactgtttttttccctcaccccgtcttcccacagAGTCAGATGATAACTTATTGGGGACTATCCAAGTGAGGAATATGAAGGGGTTTCTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGGAGAAAAATTCTGAGAATATCggtaagaactcccctcatctatttgggaagaaaaatcctgggaatatcaga Alignment from CESAR AGTCAGATGATAACTTACTGGGGA-TATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCg attaaacttcttcttagactgtttttttccctcaccccgtcttcccacagAGTCAGATGATAACTTATTGGGGACTATCCAAGTGAGGAATATGAAGGGGTTTCTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGGAGAAAAATTCTGAGAATATCggtaagaactcccctcatctatttgggaagaaaaatcctgggaatatcaga Alignment from Spaln_aa2Genome AGTCAGATGATAACTTACTGGGGA-TATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCG attaaacttcttcttagactgtttttttccctcaccccgtcttcccacagAGTCAGATGATAACTTATTGGGGAcTATCCAAGTGAGGAATATGAAGGGGTTTCTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGGAGAAAAATTCTGAGAATATCGgtaagaactcccctcatctatttgggaagaaaaatcctgggaatatcaga Alignment from Spaln_nt2Genome AGTCAGATGATAACTTACTGGGGA-TATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCG attaaacttcttcttagactgtttttttccctcaccccgtcttcccacagAGTCAGATGATAACTTATTGGGGACTATCCAAGTGAGGAATATGAAGGGGTTTCTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGGAGAAAAATTCTGAGAATATCGgtaagaactcccctcatctatttgggaagaaaaatcctgggaatatcaga Alignment from Pairagon AGTCAGATGATAACTTACTGGGGA-TATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCG attaaacttcttcttagactgtttttttccctcaccccgtcttcccacagAGTCAGATGATAACTTATTGGGGACTATCCAAGTGAGGAATATGAAGGGGTTTCTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGGAGAAAAATTCTGAGAATATCGgtaagaactcccctcatctatttgggaagaaaaatcctgggaatatcaga Alignment from Exonerate_protein2genome AGTCAGATGATAACTTACTGGGGA-TATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCG attaaacttcttcttagactgtttttttccctcaccccgtcttcccacagAGTCAGATGATAACTTATTGGGGACTATCCAAGTGAGGAATATGAAGGGGTTTCTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGGAGAAAAATTCTGAGAATATCGgtaagaactcccctcatctatttgggaagaaaaatcctgggaatatcaga Alignment from Exonerate_coding2genome AGTCAGATGATAACTTACTGGGGA-TATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCG attaaacttcttcttagactgtttttttccctcaccccgtcttcccacagAGTCAGATGATAACTTATTGGGGACTATCCAAGTGAGGAATATGAAGGGGTTTCTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGGAGAAAAATTCTGAGAATATCGgtaagaactcccctcatctatttgggaagaaaaatcctgggaatatcaga Alignment from GeneWise AGTCAGATGATAACTTACTGG-GGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCG attaaacttcttcttagactgtttttttccctcaccccgtcttcccacagAGTCAGATGATAACTTATTGGGGACTATCCAAGTGAGGAATATGAAGGGGTTTCTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGGAGAAAAATTCTGAGAATATCGgtaagaactcccctcatctatttgggaagaaaaatcctgggaatatcaga #### Loxl4_ID8568_7 --> 2 - 0 Original Alignment ggCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTATGAGCGGACCCTGGGTGAC-TGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCAAACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG tgcagctgggtattacatagaagccttaagtgtgatttctctctgcccagggCTAGGACCAATCCATCTGAGTGAGGTGCGATGCCGGGGGTATGAGCGGGCCCTGGGTGACCTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCAAATGATGCTGCTGTCAGGTGCAACATCCCAGATATGGGCTTCCAGAACAAGgtaggtttagcccttcatgccttcaggcaggggcttagggtggcctaact Alignment from CESAR ggCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTATGAGCGGACCCTGGGTGAC-TGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCAAACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG tgcagctgggtattacatagaagccttaagtgtgatttctctctgcccagggCTAGGACCAATCCATCTGAGTGAGGTGCGATGCCGGGGGTATGAGCGGGCCCTGGGTGACCTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCAAATGATGCTGCTGTCAGGTGCAACATCCCAGATATGGGCTTCCAGAACAAGgtaggtttagcccttcatgccttcaggcaggggcttagggtggcctaact Alignment from Spaln_aa2Genome GGCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTATGAGCGGACCCTGGGTGAC-TGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCAAACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG tgcagctgggtattacatagaagccttaagtgtgatttctctctgcccagGGCTAGGACCAATCCATCTGAGTGAGGTGCGATGCCGGGGGTATGAGCGGGCCCTGGGTGACcTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCAAATGATGCTGCTGTCAGGTGCAACATCCCAGATATGGGCTTCCAGAACAAGgtaggtttagcccttcatgccttcaggcaggggcttagggtggcctaact Alignment from Spaln_nt2Genome GGCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTATGAGCGGACCCTGGGTGA-CTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCAAACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG tgcagctgggtattacatagaagccttaagtgtgatttctctctgcccagGGCTAGGACCAATCCATCTGAGTGAGGTGCGATGCCGGGGGTATGAGCGGGCCCTGGGTGACCTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCAAATGATGCTGCTGTCAGGTGCAACATCCCAGATATGGGCTTCCAGAACAAGgtaggtttagcccttcatgccttcaggcaggggcttagggtggcctaact Alignment from Pairagon GGCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTATGAGCGGACCCTGGGTGA-CTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCAAACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG tgcagctgggtattacatagaagccttaagtgtgatttctctctgcccagGGCTAGGACCAATCCATCTGAGTGAGGTGCGATGCCGGGGGTATGAGCGGGCCCTGGGTGACCTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCAAATGATGCTGCTGTCAGGTGCAACATCCCAGATATGGGCTTCCAGAACAAGgtaggtttagcccttcatgccttcaggcaggggcttagggtggcctaact Alignment from Exonerate_protein2genome GGCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTATGAGCGGACCCTGGGTGAC-TGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCAAACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG tgcagctgggtattacatagaagccttaagtgtgatttctctctgcccagGGCTAGGACCAATCCATCTGAGTGAGGTGCGATGCCGGGGGTATGAGCGGGCCCTGGGTGACCTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCAAATGATGCTGCTGTCAGGTGCAACATCCCAGATATGGGCTTCCAGAACAAGgtaggtttagcccttcatgccttcaggcaggggcttagggtggcctaact Alignment from Exonerate_coding2genome GGCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTATGAGCGGACCCTGGGTGAC-TGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCAAACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG tgcagctgggtattacatagaagccttaagtgtgatttctctctgcccagGGCTAGGACCAATCCATCTGAGTGAGGTGCGATGCCGGGGGTATGAGCGGGCCCTGGGTGACCTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCAAATGATGCTGCTGTCAGGTGCAACATCCCAGATATGGGCTTCCAGAACAAGgtaggtttagcccttcatgccttcaggcaggggcttagggtggcctaact Alignment from GeneWise GGCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTATGAGCGGACCCTGGGT-GACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCAAACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG tgcagctgggtattacatagaagccttaagtgtgatttctctctgcccagGGCTAGGACCAATCCATCTGAGTGAGGTGCGATGCCGGGGGTATGAGCGGGCCCTGGGTGACCTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGTCAACATGCAAATGATGCTGCTGTCAGGTGCAACATCCCAGATATGGGCTTCCAGAACAAGgtaggtttagcccttcatgccttcaggcaggggcttagggtggcctaact #### Ltbp3_ID1252_4 --> 0 - 1 Original Alignment TGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAG-GAAGATTGCTGCGGTAGCATCGGTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGt gcagtgggggcggggcattcagtgattctcttctccccggatctctacagTGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGCGAAGATTGCTGCGGTAGCATCGGTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGtgtaagtggctggccttggcttagtgtggtatctcccactgagtggcagtg Alignment from CESAR TGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAG-GAAGATTGCTGCGGTAGCATCGGTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGt gcagtgggggcggggcattcagtgattctcttctccccggatctctacagTGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGCGAAGATTGCTGCGGTAGCATCGGTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGtgtaagtggctggccttggcttagtgtggtatctcccactgagtggcagtg Alignment from Spaln_aa2Genome TGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAG-GAAGATTGCTGCGGTAGCATCGGTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGT gcagtgggggcggggcattcagtgattctcttctccccggatctctacagTGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGcGAAGATTGCTGCGGTAGCATCGGTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGTgtaagtggctggccttggcttagtgtggtatctcccactgagtggcagtg Alignment from Spaln_nt2Genome TGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAG-GAAGATTGCTGCGGTAGCATCGGTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGT gcagtgggggcggggcattcagtgattctcttctccccggatctctacagTGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGCGAAGATTGCTGCGGTAGCATCGGTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGTgtaagtggctggccttggcttagtgtggtatctcccactgagtggcagtg Alignment from Pairagon TGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAG-GAAGATTGCTGCGGTAGCATCGGTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGT gcagtgggggcggggcattcagtgattctcttctccccggatctctacagTGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGCGAAGATTGCTGCGGTAGCATCGGTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGTgtaagtggctggccttggcttagtgtggtatctcccactgagtggcagtg Alignment from Exonerate_protein2genome TGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAG-GAAGATTGCTGCGGTAGCATCGGTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGT gcagtgggggcggggcattcagtgattctcttctccccggatctctacagTGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGCGAAGATTGCTGCGGTAGCATCGGTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGTgtaagtggctggccttggcttagtgtggtatctcccactgagtggcagtg Alignment from Exonerate_coding2genome TGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAG-GAAGATTGCTGCGGTAGCATCGGTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGT gcagtgggggcggggcattcagtgattctcttctccccggatctctacagTGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGCGAAGATTGCTGCGGTAGCATCGGTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGTgtaagtggctggccttggcttagtgtggtatctcccactgagtggcagtg Alignment from GeneWise TGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAG-GAAGATTGCTGCGGTAGCATCGGTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGT gcagtgggggcggggcattcagtgattctcttctccccggatctctacagTGTGGCAGCAACCCTTTGCCTGGCCTTACCAAGCAGCGAAGATTGCTGCGGTAGCATCGGTACTGCCTGGGGACAAAGCAAGTGTCACAAGTGCCCACAGCTTCAGTgtaagtggctggccttggcttagtgtggtatctcccactgagtggcagtg #### Ltbp3_ID1254_6 --> 2 - 1 Original Alignment atATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGT-GTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTg gtttgctgccatgttatagcctcaactgcatgattgggggctccaagcagatATCAATGAATGTGTGATGCCTGGCATGTGTCGTCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTCGTCTGCCCGCCTGGTCATAGCTTGGGTCCTTTTCGCACACAGTGCATAggtatgtttggggactcctggagaagccggatgggaggagcatagtcaagg Alignment from CESAR atATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGT-GTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTg gtttgctgccatgttatagcctcaactgcatgattgggggctccaagcagatATCAATGAATGTGTGATGCCTGGCATGTGTCGTCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTCGTCTGCCCGCCTGGTCATAGCTTGGGTCCTTTTCGCACACAGTGCATAggtatgtttggggactcctggagaagccggatgggaggagcatagtcaagg Alignment from Spaln_aa2Genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGT-GTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gtttgctgccatgttatagcctcaactgcatgattgggggctccaagcagATATCAATGAATGTGTGATGCCTGGCATGTGTCGTCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTcGTCTGCCCGCCTGGTCATAGCTTGGGTCCTTTTCGCACACAGTGCATAGgtatgtttggggactcctggagaagccggatgggaggagcatagtcaagg Alignment from Spaln_nt2Genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGT-GTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gtttgctgccatgttatagcctcaactgcatgattgggggctccaagcagATATCAATGAATGTGTGATGCCTGGCATGTGTCGTCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTCGTCTGCCCGCCTGGTCATAGCTTGGGTCCTTTTCGCACACAGTGCATAGgtatgtttggggactcctggagaagccggatgggaggagcatagtcaagg Alignment from Pairagon ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGT-GTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gtttgctgccatgttatagcctcaactgcatgattgggggctccaagcagATATCAATGAATGTGTGATGCCTGGCATGTGTCGTCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTCGTCTGCCCGCCTGGTCATAGCTTGGGTCCTTTTCGCACACAGTGCATAGgtatgtttggggactcctggagaagccggatgggaggagcatagtcaagg Alignment from Exonerate_protein2genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGT-GTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gtttgctgccatgttatagcctcaactgcatgattgggggctccaagcagATATCAATGAATGTGTGATGCCTGGCATGTGTCGTCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTCGTCTGCCCGCCTGGTCATAGCTTGGGTCCTTTTCGCACACAGTGCATAGgtatgtttggggactcctggagaagccggatgggaggagcatagtcaagg Alignment from Exonerate_coding2genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGT-GTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gtttgctgccatgttatagcctcaactgcatgattgggggctccaagcagATATCAATGAATGTGTGATGCCTGGCATGTGTCGTCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTCGTCTGCCCGCCTGGTCATAGCTTGGGTCCTTTTCGCACACAGTGCATAGgtatgtttggggactcctggagaagccggatgggaggagcatagtcaagg Alignment from GeneWise --GATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGT-GTCTGCCCGCCCGGTCATAGCTTGGGTCCCTCGCGCACACAGTGCATTG gtttgctgccatgttatagcctcaactgcatgattgggggctccaagCAGATATCAATGAATGTGTGATGCCTGGCATGTGTCGTCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTCGTCTGCCCGCCTGGTCATAGCTTGGGTCCTTTTCGCACACAGTGCATAGgtatgtttggggactcctggagaagccggatgggaggagcatagtcaagg #### Ltbp3_ID1263_15 --> 2 - 1 Original Alignment acATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGC-TACCGTAGCCAGGGGGGCGGGGCCTGTCGTg accagccttgttgaccccagccatgcttcaatggcttcatttatccctagacATCGATGAGTGTCGTGACCCTAGCACCTGCCCTGATGGCAAGTGTGAAAACAAACTTGGTAGCTTCAAGTGCATTGCCTGCCAGCCTGGCCTACCGTAGCCAGGGGGGTGGGGCCTGTCGTggtgagggcagatctgattccacttaaagggggggcctctcttggatagag Alignment from CESAR acATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGC-TACCGTAGCCAGGGGGGCGGGGCCTGTCGTg accagccttgttgaccccagccatgcttcaatggcttcatttatccctagacATCGATGAGTGTCGTGACCCTAGCACCTGCCCTGATGGCAAGTGTGAAAACAAACTTGGTAGCTTCAAGTGCATTGCCTGCCAGCCTGGCCTACCGTAGCCAGGGGGGTGGGGCCTGTCGTggtgagggcagatctgattccacttaaagggggggcctctcttggatagag Alignment from Spaln_aa2Genome ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGC-TACCGTAGCCAGGGGGGCGGGGCCTGTCGTG accagccttgttgaccccagccatgcttcaatggcttcatttatccctagACATCGATGAGTGTCGTGACCCTAGCACCTGCCCTGATGGCAAGTGTGAAAACAAACTTGGTAGCTTCAAGTGCATTGCCTGCCAGCCTGGCcTACCGTAGCCAGGGGGGTGGGGCCTGTCGTGgtgagggcagatctgattccacttaaagggggggcctctcttggatagag Alignment from Spaln_nt2Genome ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGG-CTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG accagccttgttgaccccagccatgcttcaatggcttcatttatccctagACATCGATGAGTGTCGTGACCCTAGCACCTGCCCTGATGGCAAGTGTGAAAACAAACTTGGTAGCTTCAAGTGCATTGCCTGCCAGCCTGGCCTACCGTAGCCAGGGGGGTGGGGCCTGTCGTGgtgagggcagatctgattccacttaaagggggggcctctcttggatagag Alignment from Pairagon ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGG-CTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG accagccttgttgaccccagccatgcttcaatggcttcatttatccctagACATCGATGAGTGTCGTGACCCTAGCACCTGCCCTGATGGCAAGTGTGAAAACAAACTTGGTAGCTTCAAGTGCATTGCCTGCCAGCCTGGCCTACCGTAGCCAGGGGGGTGGGGCCTGTCGTGgtgagggcagatctgattccacttaaagggggggcctctcttggatagag Alignment from Exonerate_protein2genome ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGC-TACCGTAGCCAGGGGGGCGGGGCCTGTCGTG accagccttgttgaccccagccatgcttcaatggcttcatttatccctagACATCGATGAGTGTCGTGACCCTAGCACCTGCCCTGATGGCAAGTGTGAAAACAAACTTGGTAGCTTCAAGTGCATTGCCTGCCAGCCTGGCCTACCGTAGCCAGGGGGGTGGGGCCTGTCGTGgtgagggcagatctgattccacttaaagggggggcctctcttggatagag Alignment from Exonerate_coding2genome ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGC-TACCGTAGCCAGGGGGGCGGGGCCTGTCGTG accagccttgttgaccccagccatgcttcaatggcttcatttatccctagACATCGATGAGTGTCGTGACCCTAGCACCTGCCCTGATGGCAAGTGTGAAAACAAACTTGGTAGCTTCAAGTGCATTGCCTGCCAGCCTGGCCTACCGTAGCCAGGGGGGTGGGGCCTGTCGTGgtgagggcagatctgattccacttaaagggggggcctctcttggatagag Alignment from GeneWise ACATCGACGAGTGTCGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCT-GGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG accagccttgttgaccccagccatgcttcaatggcttcatttatccctagACATCGATGAGTGTCGTGACCCTAGCACCTGCCCTGATGGCAAGTGTGAAAACAAACTTGGTAGCTTCAAGTGCATTGCCTGCCAGCCTGGCCTACCGTAGCCAGGGGGGTGGGGCCTGTCGTGgtgagggcagatctgattccacttaaagggggggcctctcttggatagag #### Ltbp3_ID1270_22 --> 2 - 1 Original Alignment acATCGACGAATGCATATTGTTTGGGGCAGAG-ATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGg caagtgatgcacagggccactgggcactctggtgtatcatctgtctgcagacATTGATGAATGCATATTGTTTGGGGCAGAGCATCTGCAAGGAGGGTAAGTTTGTGAACACGCAGCCTGGCTATGAGTGCTACTGCAAGCAGGGCTTCTATTACGATGGCAACCTGCTAGAGTGCGTGggtaagtctgattacagtgcttctcaggaaagcagctgaattcaggcccta Alignment from CESAR acATCGACGAATGCATATTGTTTGGGGCAGAG-ATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGg caagtgatgcacagggccactgggcactctggtgtatcatctgtctgcagacATTGATGAATGCATATTGTTTGGGGCAGAGCATCTGCAAGGAGGGTAAGTTTGTGAACACGCAGCCTGGCTATGAGTGCTACTGCAAGCAGGGCTTCTATTACGATGGCAACCTGCTAGAGTGCGTGggtaagtctgattacagtgcttctcaggaaagcagctgaattcaggccctc Alignment from Spaln_aa2Genome ACATCGACGAATGCATATTGTTTGGGGCAGAG-ATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG caagtgatgcacagggccactgggcactctggtgtatcatctgtctgcagACATTGATGAATGCATATTGTTTGGGGCAGAGcATCTGCAAGGAGGGTAAGTTTGTGAACACGCAGCCTGGCTATGAGTGCTACTGCAAGCAGGGCTTCTATTACGATGGCAACCTGCTAGAGTGCGTGGgtaagtctgattacagtgcttctcaggaaagcagctgaattcaggcccta Alignment from Spaln_nt2Genome ACATCGACGAATGCATATTGTTTGGGGCAGAG-ATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG caagtgatgcacagggccactgggcactctggtgtatcatctgtctgcagACATTGATGAATGCATATTGTTTGGGGCAGAGCATCTGCAAGGAGGGTAAGTTTGTGAACACGCAGCCTGGCTATGAGTGCTACTGCAAGCAGGGCTTCTATTACGATGGCAACCTGCTAGAGTGCGTGGgtaagtctgattacagtgcttctcaggaaagcagctgaattcaggcccta Alignment from Pairagon ACATCGACGAATGCATATTGTTTGGGGCAGAG-ATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG caagtgatgcacagggccactgggcactctggtgtatcatctgtctgcagACATTGATGAATGCATATTGTTTGGGGCAGAGCATCTGCAAGGAGGGTAAGTTTGTGAACACGCAGCCTGGCTATGAGTGCTACTGCAAGCAGGGCTTCTATTACGATGGCAACCTGCTAGAGTGCGTGGgtaagtctgattacagtgcttctcaggaaagcagctgaattcaggcccta Alignment from Exonerate_protein2genome ACATCGACGAATGCATATTGTTTGGGGCAGAG-ATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG caagtgatgcacagggccactgggcactctggtgtatcatctgtctgcagACATTGATGAATGCATATTGTTTGGGGCAGAGCATCTGCAAGGAGGGTAAGTTTGTGAACACGCAGCCTGGCTATGAGTGCTACTGCAAGCAGGGCTTCTATTACGATGGCAACCTGCTAGAGTGCGTGGgtaagtctgattacagtgcttctcaggaaagcagctgaattcaggcccta Alignment from Exonerate_coding2genome ACATCGACGAATGCATATTGTTTGGGGCAGAG-ATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG caagtgatgcacagggccactgggcactctggtgtatcatctgtctgcagACATTGATGAATGCATATTGTTTGGGGCAGAGCATCTGCAAGGAGGGTAAGTTTGTGAACACGCAGCCTGGCTATGAGTGCTACTGCAAGCAGGGCTTCTATTACGATGGCAACCTGCTAGAGTGCGTGGgtaagtctgattacagtgcttctcaggaaagcagctgaattcaggcccta Alignment from GeneWise ACATCGACGAATGCATATTGTTTGGGGCAGAG-ATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG caagtgatgcacagggccactgggcactctggtgtatcatctgtctgcagACATTGATGAATGCATATTGTTTGGGGCAGAGCATCTGCAAGGAGGGTAAGTTTGTGAACACGCAGCCTGGCTATGAGTGCTACTGCAAGCAGGGCTTCTATTACGATGGCAACCTGCTAGAGTGCGTGGgtaagtctgattacagtgcttctcaggaaagcagctgaattcaggcccta #### Ltbp3_ID1272_24 --> 2 - 1 Original Alignment agCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTG-GCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCg ggTCCC tcccttattccccctccctccctcctgtctgctctgcactttaccaccagagCATGCCCCAGAAAGATGTGAAGTATGCTGGGGCCAGCGAGGAGAAGATGGGATGTGTATGGGGCCCCTACGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGTGGCTGGGGTACCCAGTGCAGACCATGCCCACCACGTGGTACTggtaccttacccctgagggacgattcctgctcttattgtccccagggTCCC Alignment from CESAR agCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTG-GCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCg ggTCCC tcccttattccccctccctccctcctgtctgctctgcactttaccaccagagCATGCCCCAGAAAGATGTGAAGTATGCTGGGGCCAGCGAGGAGAAGATGGGATGTGTATGGGGCCCCTACGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGTGGCTGGGGTACCCAGTGCAGACCATGCCCACCACGTGGTACTggtaccttacccctgagggacgaccttccctattgatatccacagggTCCC Alignment from Spaln_aa2Genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTG-GCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC tcccttattccccctccctccctcctgtctgctctgcactttaccaccagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGCCAGCGAGGAGAAGATGGGATGTGTATGGGGCCCCTAcGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGTGGCTGGGGTACCCAGTGCAGACCATGCCCACCACGTGGTACTGgtaccttacccctgagggacgattcctgctcttattgtccccagGGTCCC Alignment from Spaln_nt2Genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTG-GCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC tcccttattccccctccctccctcctgtctgctctgcactttaccaccagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGCCAGCGAGGAGAAGATGGGATGTGTATGGGGCCCCTACGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGTGGCTGGGGTACCCAGTGCAGACCATGCCCACCACGTGGTACTGgtaccttacccctgagggacgattcctgctcttattgtccccagGGTCCC Alignment from Pairagon AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTG-GCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC tcccttattccccctccctccctcctgtctgctctgcactttaccaccagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGCCAGCGAGGAGAAGATGGGATGTGTATGGGGCCCCTACGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGTGGCTGGGGTACCCAGTGCAGACCATGCCCACCACGTGGTACTGgtaccttacccctgagggacgattcctgctcttattgtccccagGGTCCC Alignment from Exonerate_protein2genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTG-GCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC tcccttattccccctccctccctcctgtctgctctgcactttaccaccagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGCCAGCGAGGAGAAGATGGGATGTGTATGGGGCCCCTACGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGTGGCTGGGGTACCCAGTGCAGACCATGCCCACCACGTGGTACTGgtaccttacccctgagggacgattcctgctcttattgtccccagGGTCCC Alignment from Exonerate_coding2genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTG-GCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC tcccttattccccctccctccctcctgtctgctctgcactttaccaccagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGCCAGCGAGGAGAAGATGGGATGTGTATGGGGCCCCTACGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGTGGCTGGGGTACCCAGTGCAGACCATGCCCACCACGTGGTACTGgtaccttacccctgagggacgattcctgctcttattgtccccagGGTCCC Alignment from GeneWise AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGAGAGGACGGCATGTGTATGGGGCCCCTG-GCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC tcccttattccccctccctccctcctgtctgctctgcactttaccaccagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGCCAGCGAGGAGAAGATGGGATGTGTATGGGGCCCCTACGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGTGGCTGGGGTACCCAGTGCAGACCATGCCCACCACGTGGTACTGgtaccttacccctgagggacgattcctgctcttattgtccccagGGTCCC #### Ltbp3_ID1274_26 --> 2 - 1 Original Alignment acGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGC-GGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGg ccaaaggtatagaagcccatttttagatttatgggcttccttcctttcagacGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGATTCGGGCACTGTGTGCCACGCCCAGGCGGGGCGGTATGTGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTTGTGTAggtatctatgacattagggactgaggggcagagtgcactgggtgcagactg Alignment from CESAR acGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGC-GGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGg ccaaaggtatagaagcccatttttagatttatgggcttccttcctttcagacGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGATTCGGGCACTGTGTGCCACGCCCAGGCGGGGCGGTATGTGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTTGTGTAggtatctatgacattagggactgaggggcagagtgcactgggtgcagactg Alignment from Spaln_aa2Genome ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGC-GGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG ccaaaggtatagaagcccatttttagatttatgggcttccttcctttcagACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGATTcGGGCACTGTGTGCCACGCCCAGGCGGGGCGGTATGTGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTTGTGTAGgtatctatgacattagggactgaggggcagagtgcactgggtgcagactg Alignment from Spaln_nt2Genome ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAG-CGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG ccaaaggtatagaagcccatttttagatttatgggcttccttcctttcagACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGATTCGGGCACTGTGTGCCACGCCCAGGCGGGGCGGTATGTGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTTGTGTAGgtatctatgacattagggactgaggggcagagtgcactgggtgcagactg Alignment from Pairagon ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGA-GCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG ccaaaggtatagaagcccatttttagatttatgggcttccttcctttcagACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGATTCGGGCACTGTGTGCCACGCCCAGGCGGGGCGGTATGTGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTTGTGTAGgtatctatgacattagggactgaggggcagagtgcactgggtgcagactg Alignment from Exonerate_protein2genome ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTG-AGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG ccaaaggtatagaagcccatttttagatttatgggcttccttcctttcagACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGATTCGGGCACTGTGTGCCACGCCCAGGCGGGGCGGTATGTGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTTGTGTAGgtatctatgacattagggactgaggggcagagtgcactgggtgcagactg Alignment from Exonerate_coding2genome ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTG-AGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG ccaaaggtatagaagcccatttttagatttatgggcttccttcctttcagACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGATTCGGGCACTGTGTGCCACGCCCAGGCGGGGCGGTATGTGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTTGTGTAGgtatctatgacattagggactgaggggcagagtgcactgggtgcagactg Alignment from GeneWise ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTG-AGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG ccaaaggtatagaagcccatttttagatttatgggcttccttcctttcagACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGATTCGGGCACTGTGTGCCACGCCCAGGCGGGGCGGTATGTGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTTGTGTAGgtatctatgacattagggactgaggggcagagtgcactgggtgcagactg #### Macrod1_ID2053_8 --> 2 - 0 Original Alignment gcTACCCCAATGAGGAGGCTGCA-GAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG gggtagggtggggtggggccagatatggtatatttttaaatgttttataggcTACCCCAATGAGGAGGCTGCACGAAGTAGTGCTGGTTTCACTGCGGGAATGGCTGGAGCAGCACAAGGACAAGgtgagtcctgacagaggttagcagtggaactgaagcttgggtgccacaca Alignment from CESAR gcTACCCCAATGAGGAGGCTGCA-GAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG gggtagggtggggtggggccagatatggtatatttttaaatgttttataggcTACCCCAATGAGGAGGCTGCACGAAGTAGTGCTGGTTTCACTGCGGGAATGGCTGGAGCAGCACAAGGACAAGgtgagtcctgacagaggttagcagtggaactgaagcttgggtgccacaca Alignment from Spaln_aa2Genome GCTACCCCAATGAGGAGGCTGCA-GAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG gggtagggtggggtggggccagatatggtatatttttaaatgttttatagGCTACCCCAATGAGGAGGCTGCAcGAAGTAGTGCTGGTTTCACTGCGGGAATGGCTGGAGCAGCACAAGGACAAGgtgagtcctgacagaggttagcagtggaactgaagcttgggtgccacaca Alignment from Spaln_nt2Genome GCTACCCCAATGAGGAGGCTGCA-GAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG gggtagggtggggtggggccagatatggtatatttttaaatgttttatagGCTACCCCAATGAGGAGGCTGCACGAAGTAGTGCTGGTTTCACTGCGGGAATGGCTGGAGCAGCACAAGGACAAGgtgagtcctgacagaggttagcagtggaactgaagcttgggtgccacaca Alignment from Pairagon GCTACCCCAATGAGGAGGCTGCA-GAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG gggtagggtggggtggggccagatatggtatatttttaaatgttttatagGCTACCCCAATGAGGAGGCTGCACGAAGTAGTGCTGGTTTCACTGCGGGAATGGCTGGAGCAGCACAAGGACAAGgtgagtcctgacagaggttagcagtggaactgaagcttgggtgccacaca Alignment from Exonerate_protein2genome GCTACCCCAATGAGGAGGCTGCA-GAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG gggtagggtggggtggggccagatatggtatatttttaaatgttttatagGCTACCCCAATGAGGAGGCTGCACGAAGTAGTGCTGGTTTCACTGCGGGAATGGCTGGAGCAGCACAAGGACAAGgtgagtcctgacagaggttagcagtggaactgaagcttgggtgccacaca Alignment from Exonerate_coding2genome GCTACCCCAATGAGGAGGCTGCA-GAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG gggtagggtggggtggggccagatatggtatatttttaaatgttttatagGCTACCCCAATGAGGAGGCTGCACGAAGTAGTGCTGGTTTCACTGCGGGAATGGCTGGAGCAGCACAAGGACAAGgtgagtcctgacagaggttagcagtggaactgaagcttgggtgccacaca Alignment from GeneWise ---------GCTTTCCCGTGCATCTCCACAGGCGTGTTTGGCTACCCCAATGAGGAGGCT-GCAGAAGTAGTGCTGGCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG gtggggccagATATGGTATATTTTTAAATGTTTT------------ATAGGCTACCCCAATGAGGAGGCTGCACGAAGTAGTGCTGGTTTCACTGCGGGAATGGCTGGAGCAGCACAAGGACAAGgtgagtcctgacagaggttagcagtggaactgaagcttgggtgccacaca #### Map3k11_ID1202_3 --> 1 - 1 Original Alignment cTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCT-ACCTGCCCTGAGCCCTTTGCACAACTCATGGCTg tagttcctccttggttgtaggtgcacatcttgtttcctttgccctaccagcTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCTGTAGCGTATGGTGTGGCTGTAAACAAATTAACGTTACCCATCCCATCTCACTTGCCCTGAGCCCTTTGCACAACTCATGGCTggtaagagagatggggctggggaggtgaggggcaaacctcctcaacccaga Alignment from CESAR cTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCT-ACCTGCCCTGAGCCCTTTGCACAACTCATGGCTg tagttcctccttggttgtaggtgcacatcttgtttcctttgccctaccagcTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCTGTAGCGTATGGTGTGGCTGTAAACAAATTAACGTTACCCATCCCATCTCACTTGCCCTGAGCCCTTTGCACAACTCATGGCTggtaagagagatggggctggggaggtgaggggcaaacctcctcaacccaga Alignment from Spaln_aa2Genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCT-ACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctccttggttgtaggtgcacatcttgtttcctttgccctaccagCTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCTGTAGCGTATGGTGTGGCTGTAAACAAATTAACGTTACCCATCCCATCTcACTTGCCCTGAGCCCTTTGCACAACTCATGGCTGgtaagagagatggggctggggaggtgaggggcaaacctcctcaacccaga Alignment from Spaln_nt2Genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCT-ACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctccttggttgtaggtgcacatcttgtttcctttgccctaccagCTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCTGTAGCGTATGGTGTGGCTGTAAACAAATTAACGTTACCCATCCCATCTCACTTGCCCTGAGCCCTTTGCACAACTCATGGCTGgtaagagagatggggctggggaggtgaggggcaaacctcctcaacccaga Alignment from Pairagon CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCT-ACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctccttggttgtaggtgcacatcttgtttcctttgccctaccagCTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCTGTAGCGTATGGTGTGGCTGTAAACAAATTAACGTTACCCATCCCATCTCACTTGCCCTGAGCCCTTTGCACAACTCATGGCTGgtaagagagatggggctggggaggtgaggggcaaacctcctcaacccaga Alignment from Exonerate_protein2genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCT-ACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctccttggttgtaggtgcacatcttgtttcctttgccctaccagCTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCTGTAGCGTATGGTGTGGCTGTAAACAAATTAACGTTACCCATCCCATCTCACTTGCCCTGAGCCCTTTGCACAACTCATGGCTGgtaagagagatggggctggggaggtgaggggcaaacctcctcaacccaga Alignment from Exonerate_coding2genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCT-ACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctccttggttgtaggtgcacatcttgtttcctttgccctaccagCTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCTGTAGCGTATGGTGTGGCTGTAAACAAATTAACGTTACCCATCCCATCTCACTTGCCCTGAGCCCTTTGCACAACTCATGGCTGgtaagagagatggggctggggaggtgaggggcaaacctcctcaacccaga Alignment from GeneWise CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCA-TCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctccttggttgtaggtgcacatcttgtttcctttgccctaccagCTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCTGTAGCGTATGGTGTGGCTGTAAACAAATTAACGTTACCCATCCCATCTCACTTGCCCTGAGCCCTTTGCACAACTCATGGCTGgtaagagagatggggctggggaggtgaggggcaaacctcctcaacccaga #### Map3k11_ID1203_4 --> 2 - 0 Original Alignment acTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTC-CATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG ctcctcaacccagacacaatgttcacagtaggtcacttttgtcaacatagacTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTTGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCCCATTCCATGCAGGAAGGCTGGAAACGTGAGATTGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtaagcaggatgggggacaaaagggggggtagaggatagggtgggggtct Alignment from CESAR acTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTC-CATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG ctcctcaacccagacacaatgttcacagtaggtcacttttgtcaacatagacTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTTGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCCCATTCCATGCAGGAAGGCTGGAAACGTGAGATTGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtaagcaggatgggggacaaaagggggggtagaggatagggtgggggtct Alignment from Spaln_aa2Genome ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTC-CATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG ctcctcaacccagacacaatgttcacagtaggtcacttttgtcaacatagACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTTGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCcCATTCCATGCAGGAAGGCTGGAAACGTGAGATTGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtaagcaggatgggggacaaaagggggggtagaggatagggtgggggtct Alignment from Spaln_nt2Genome ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTT-CCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG ctcctcaacccagacacaatgttcacagtaggtcacttttgtcaacatagACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTTGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCCCATTCCATGCAGGAAGGCTGGAAACGTGAGATTGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtaagcaggatgggggacaaaagggggggtagaggatagggtgggggtct Alignment from Pairagon ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTT-CCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG ctcctcaacccagacacaatgttcacagtaggtcacttttgtcaacatagACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTTGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCCCATTCCATGCAGGAAGGCTGGAAACGTGAGATTGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtaagcaggatgggggacaaaagggggggtagaggatagggtgggggtct Alignment from Exonerate_protein2genome ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTC-CATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG ctcctcaacccagacacaatgttcacagtaggtcacttttgtcaacatagACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTTGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCCCATTCCATGCAGGAAGGCTGGAAACGTGAGATTGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtaagcaggatgggggacaaaagggggggtagaggatagggtgggggtct Alignment from Exonerate_coding2genome ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTC-CATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG ctcctcaacccagacacaatgttcacagtaggtcacttttgtcaacatagACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTTGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCCCATTCCATGCAGGAAGGCTGGAAACGTGAGATTGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtaagcaggatgggggacaaaagggggggtagaggatagggtgggggtct Alignment from GeneWise ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCC-TTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG ctcctcaacccagacacaatgttcacagtaggtcacttttgtcaacatagACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTTGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCCCATTCCATGCAGGAAGGCTGGAAACGTGAGATTGAGGGCTTGTTTGATGAGCTGCGGGCCAAGGAAAAGgtaagcaggatgggggacaaaagggggggtagaggatagggtgggggtct #### Map3k11_ID1206_7 --> 2 - 2 Original Alignment tgGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCC-AAGCCTGGGGAGGCCCAGAACGGGag gtaaggatgtaagataaagatggactccacatctgccgtgcctggtctagtgGAACCTACAGAATCAGGCCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCCTGCTGGGCCTGGGGTCCCAGCTCCCCCCAAGCCTGGGGAGGCCCAAAATGGGaggtgagtgcttcagcaccctaaagccctggtgttctactttttggggctct Alignment from CESAR tgGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCC-CCCAAGCCTGGGGAGGCCCAGAACGGGag gtaaggatgtaagataaagatggactccacatctgccgtgcctggtctagtgGAACCTACAGAATCAGGCCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCCTGCTGGGCCTGGGGTCCCAGCTCCCCCCAAGCCTGGGGAGGCCCAAAATGGGaggtgagtgcttcagcaccctaaagccctggtgttctactttttggggctct Alignment from Spaln_aa2Genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCC-AAGCCTGGGGAGGCCCAGAACGGGAG gtaaggatgtaagataaagatggactccacatctgccgtgcctggtctagTGGAACCTACAGAATCAGGCCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCCTGCTGGGCCTGGGGTCCCAGCTCCCCCcAAGCCTGGGGAGGCCCAAAATGGGAGgtgagtgcttcagcaccctaaagccctggtgttctactttttggggctct Alignment from Spaln_nt2Genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCC-CAAGCCTGGGGAGGCCCAGAACGGGAG gtaaggatgtaagataaagatggactccacatctgccgtgcctggtctagTGGAACCTACAGAATCAGGCCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCCTGCTGGGCCTGGGGTCCCAGCTCCCCCCAAGCCTGGGGAGGCCCAAAATGGGAGgtgagtgcttcagcaccctaaagccctggtgttctactttttggggctct Alignment from Pairagon TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCT-CCCCCAAGCCTGGGGAGGCCCAGAACGGGAG gtaaggatgtaagataaagatggactccacatctgccgtgcctggtctagTGGAACCTACAGAATCAGGCCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCCTGCTGGGCCTGGGGTCCCAGCTCCCCCCAAGCCTGGGGAGGCCCAAAATGGGAGgtgagtgcttcagcaccctaaagccctggtgttctactttttggggctct Alignment from Exonerate_protein2genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCC-CCCAAGCCTGGGGAGGCCCAGAACGGGAG gtaaggatgtaagataaagatggactccacatctgccgtgcctggtctagTGGAACCTACAGAATCAGGCCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCCTGCTGGGCCTGGGGTCCCAGCTCCCCCCAAGCCTGGGGAGGCCCAAAATGGGAGgtgagtgcttcagcaccctaaagccctggtgttctactttttggggctct Alignment from Exonerate_coding2genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCC-CCCAAGCCTGGGGAGGCCCAGAACGGGAG gtaaggatgtaagataaagatggactccacatctgccgtgcctggtctagTGGAACCTACAGAATCAGGCCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCCTGCTGGGCCTGGGGTCCCAGCTCCCCCCAAGCCTGGGGAGGCCCAAAATGGGAGgtgagtgcttcagcaccctaaagccctggtgttctactttttggggctct Alignment from GeneWise TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGC-TCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG gtaaggatgtaagataaagatggactccacatctgccgtgcctggtctagTGGAACCTACAGAATCAGGCCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCCTGCTGGGCCTGGGGTCCCAGCTCCCCCCAAGCCTGGGGAGGCCCAAAATGGGAGgtgagtgcttcagcaccctaaagccctggtgttctactttttggggctct #### Map4k2_ID1622_2 --> 0 - 1 Original Alignment GCCCGTGACACCGTCACGTCCGAA-CTGGCCGCGGTGAAGATCGTCAAGCTAGACCCAg atatgggaaccccagccctgcccccttcgccttgtccccacccactgtagGCTCGTGACACCGTCACATCCGAACCTGGCTGCGGTGAAGATCGTCAAGCTAGACCCAggtgagtgcctgggtaagagacatgtgtgcctcctgggaaggggatgtgtg Alignment from CESAR GCCCGTGACACCGTCACGTCCGAA-CTGGCCGCGGTGAAGATCGTCAAGCTAGACCCAg atatgggaaccccagccctgcccccttcgccttgtccccacccactgtagGCTCGTGACACCGTCACATCCGAACCTGGCTGCGGTGAAGATCGTCAAGCTAGACCCAggtgagtgcctgggtaagagacatgtgtgcctcctgggaaggggatgtgtg Alignment from Spaln_aa2Genome GCCCGTGACACCGTCACGTCCGAA-CTGGCCGCGGTGAAGATCGTCAAGCTAGACCCAG atatgggaaccccagccctgcccccttcgccttgtccccacccactgtagGCTCGTGACACCGTCACATCCGAAcCTGGCTGCGGTGAAGATCGTCAAGCTAGACCCAGgtgagtgcctgggtaagagacatgtgtgcctcctgggaaggggatgtgtg Alignment from Spaln_nt2Genome GCCCGTGACACCGTCACGTCCGAA-CTGGCCGCGGTGAAGATCGTCAAGCTAGACCCAG atatgggaaccccagccctgcccccttcgccttgtccccacccactgtagGCTCGTGACACCGTCACATCCGAACCTGGCTGCGGTGAAGATCGTCAAGCTAGACCCAGgtgagtgcctgggtaagagacatgtgtgcctcctgggaaggggatgtgtg Alignment from Pairagon GCCCGTGACACCGTCACGTCCGAA-CTGGCCGCGGTGAAGATCGTCAAGCTAGACCCAG atatgggaaccccagccctgcccccttcgccttgtccccacccactgtagGCTCGTGACACCGTCACATCCGAACCTGGCTGCGGTGAAGATCGTCAAGCTAGACCCAGgtgagtgcctgggtaagagacatgtgtgcctcctgggaaggggatgtgtg Alignment from Exonerate_protein2genome GCCCGTGACACCGTCACGTCCGAA-CTGGCCGCGGTGAAGATCGTCAAGCTAGACCCAG atatgggaaccccagccctgcccccttcgccttgtccccacccactgtagGCTCGTGACACCGTCACATCCGAACCTGGCTGCGGTGAAGATCGTCAAGCTAGACCCAGgtgagtgcctgggtaagagacatgtgtgcctcctgggaaggggatgtgtg Alignment from Exonerate_coding2genome GCCCGTGACACCGTCACGTCCGAA-CTGGCCGCGGTGAAGATCGTCAAGCTAGACCCAG atatgggaaccccagccctgcccccttcgccttgtccccacccactgtagGCTCGTGACACCGTCACATCCGAACCTGGCTGCGGTGAAGATCGTCAAGCTAGACCCAGgtgagtgcctgggtaagagacatgtgtgcctcctgggaaggggatgtgtg Alignment from GeneWise atatgggaaccccagccctgcccccttcgccttgtccccacccactgtaggctcgtgacaccgtcacatccgaacctggctgcggtgaagatcgtcaagctagacccaggtgagtgcctgggtaagagacatgtgtgcctcctgggaaggggatgtgtg #### Map4k2_ID1632_11 --> 1 - 0 Original Alignment gACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCT-ACAGCAGAGAGGCTTCTGCAG tctaatttgaatttgggtgggtgggtggacaacgttgttcttattcctaggACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAAAACCCCAAGAAGAGGCCTCACAGCAGAGAGGCTTCTGCAGgtaaatggcaggggataactggtgacttgagcctcaaagacatgacctgg Alignment from CESAR gACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCT-ACAGCAGAGAGGCTTCTGCAG tctaatttgaatttgggtgggtgggtggacaacgttgttcttattcctaggACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAAAACCCCAAGAAGAGGCCTCACAGCAGAGAGGCTTCTGCAGgtaaatggcaggggataactggtgacttgagcctcaaagacatgacctgg Alignment from Spaln_aa2Genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCT-ACAGCAGAGAGGCTTCTGCAG tctaatttgaatttgggtgggtgggtggacaacgttgttcttattcctagGACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAAAACCCCAAGAAGAGGCCTcACAGCAGAGAGGCTTCTGCAGgtaaatggcaggggataactggtgacttgagcctcaaagacatgacctgg Alignment from Spaln_nt2Genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCT-ACAGCAGAGAGGCTTCTGCAG tctaatttgaatttgggtgggtgggtggacaacgttgttcttattcctagGACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAAAACCCCAAGAAGAGGCCTCACAGCAGAGAGGCTTCTGCAGgtaaatggcaggggataactggtgacttgagcctcaaagacatgacctgg Alignment from Pairagon GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCT-ACAGCAGAGAGGCTTCTGCAG tctaatttgaatttgggtgggtgggtggacaacgttgttcttattcctagGACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAAAACCCCAAGAAGAGGCCTCACAGCAGAGAGGCTTCTGCAGgtaaatggcaggggataactggtgacttgagcctcaaagacatgacctgg Alignment from Exonerate_protein2genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCT-ACAGCAGAGAGGCTTCTGCAG tctaatttgaatttgggtgggtgggtggacaacgttgttcttattcctagGACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAAAACCCCAAGAAGAGGCCTCACAGCAGAGAGGCTTCTGCAGgtaaatggcaggggataactggtgacttgagcctcaaagacatgacctgg Alignment from Exonerate_coding2genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCT-ACAGCAGAGAGGCTTCTGCAG tctaatttgaatttgggtgggtgggtggacaacgttgttcttattcctagGACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAAAACCCCAAGAAGAGGCCTCACAGCAGAGAGGCTTCTGCAGgtaaatggcaggggataactggtgacttgagcctcaaagacatgacctgg Alignment from GeneWise GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCT-ACAGCAGAGAGGCTTCTGCAG tctaatttgaatttgggtgggtgggtggacaacgttgttcttattcctagGACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAAAACCCCAAGAAGAGGCCTCACAGCAGAGAGGCTTCTGCAGgtaaatggcaggggataactggtgacttgagcctcaaagacatgacctgg #### Map4k2_ID1633_12 --> 0 - 0 Original Alignment CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCC-AGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gacatgacctggaggacagggagcaactctttggatctttctttccttagCATCCATTCACAACCCAGCATCTCCCTCCAGCCCTCCTCACCCAGCTCCTTGACAAGGCTCAGTGACCCCCATCTAGGAACCCTCTCCCCTGAAGACAGTGAGCTTGAGgtaacagcgggcaggaaaccaggtcagctcagcttggtgggaaggtggta Alignment from CESAR CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCC-AGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gacatgacctggaggacagggagcaactctttggatctttctttccttagCATCCATTCACAACCCAGCATCTCCCTCCAGCCCTCCTCACCCAGCTCCTTGACAAGGCTCAGTGACCCCCATCTAGGAACCCTCTCCCCTGAAGACAGTGAGCTTGAGgtaacagcgggcaggaaaccaggtcagctcagcttggtgggaaggtggta Alignment from Spaln_aa2Genome CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCC-AGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gacatgacctggaggacagggagcaactctttggatctttctttccttagCATCCATTCACAACCCAGCATCTCCCTCCAGCCCTCCTCACCCAGCTCCTTGACAAGGCTcAGTGACCCCCATCTAGGAACCCTCTCCCCTGAAGACAGTGAGCTTGAGgtaacagcgggcaggaaaccaggtcagctcagcttggtgggaaggtggta Alignment from Spaln_nt2Genome CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGC-CAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gacatgacctggaggacagggagcaactctttggatctttctttccttagCATCCATTCACAACCCAGCATCTCCCTCCAGCCCTCCTCACCCAGCTCCTTGACAAGGCTCAGTGACCCCCATCTAGGAACCCTCTCCCCTGAAGACAGTGAGCTTGAGgtaacagcgggcaggaaaccaggtcagctcagcttggtgggaaggtggta Alignment from Pairagon CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGC-CAGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gacatgacctggaggacagggagcaactctttggatctttctttccttagCATCCATTCACAACCCAGCATCTCCCTCCAGCCCTCCTCACCCAGCTCCTTGACAAGGCTCAGTGACCCCCATCTAGGAACCCTCTCCCCTGAAGACAGTGAGCTTGAGgtaacagcgggcaggaaaccaggtcagctcagcttggtgggaaggtggta Alignment from Exonerate_protein2genome CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCC-AGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gacatgacctggaggacagggagcaactctttggatctttctttccttagCATCCATTCACAACCCAGCATCTCCCTCCAGCCCTCCTCACCCAGCTCCTTGACAAGGCTCAGTGACCCCCATCTAGGAACCCTCTCCCCTGAAGACAGTGAGCTTGAGgtaacagcgggcaggaaaccaggtcagctcagcttggtgggaaggtggta Alignment from Exonerate_coding2genome CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCC-AGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gacatgacctggaggacagggagcaactctttggatctttctttccttagCATCCATTCACAACCCAGCATCTCCCTCCAGCCCTCCTCACCCAGCTCCTTGACAAGGCTCAGTGACCCCCATCTAGGAACCCTCTCCCCTGAAGACAGTGAGCTTGAGgtaacagcgggcaggaaaccaggtcagctcagcttggtgggaaggtggta Alignment from GeneWise CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCC-AGTGACCCCCACCTGGGAACCCTCTCCCCTGAAGACAGTGAGCTGGAG gacatgacctggaggacagggagcaactctttggatctttctttccttagCATCCATTCACAACCCAGCATCTCCCTCCAGCCCTCCTCACCCAGCTCCTTGACAAGGCTCAGTGACCCCCATCTAGGAACCCTCTCCCCTGAAGACAGTGAGCTTGAGgtaacagcgggcaggaaaccaggtcagctcagcttggtgggaaggtggta #### Map4k2_ID1636_15 --> 0 - 2 Original Alignment TGGGAGGAGGAGTGGACG-CTCCTGGGAAAAGAGGAACTGAGTgg cctcccattttgtgtctacctctcttcattaacatttttatcttttctagTGGGAGGAGGAGTGGACGCCTCCTGGGAAAAGAGGAACTGAGTgggtgagtgagtgaggttgggaaagcagaggtgcaggctgaatcctattgaa Alignment from CESAR TGGGAGGAGGAGTGGACG-CTCCTGGGAAAAGAGGAACTGAGTgg cctcccattttgtgtctacctctcttcattaacatttttatcttttctagTGGGAGGAGGAGTGGACGCCTCCTGGGAAAAGAGGAACTGAGTgggtgagtgagtgaggttgggaaagcagaggtgcaggctgaatcctattgaa Alignment from Spaln_aa2Genome TGGGAGGAGGAGTGGACG-CTCCTGGGAAAAGAGGAACTGAGTGG cctcccattttgtgtctacctctcttcattaacatttttatcttttctagTGGGAGGAGGAGTGGACGcCTCCTGGGAAAAGAGGAACTGAGTGGgtgagtgagtgaggttgggaaagcagaggtgcaggctgaatcctattgaa Alignment from Spaln_nt2Genome TGGGAGGAGGAGTGGACG-CTCCTGGGAAAAGAGGAACTGAGTGG cctcccattttgtgtctacctctcttcattaacatttttatcttttctagTGGGAGGAGGAGTGGACGCCTCCTGGGAAAAGAGGAACTGAGTGGgtgagtgagtgaggttgggaaagcagaggtgcaggctgaatcctattgaa Alignment from Pairagon TGGGAGGAGGAGTGGACG-CTCCTGGGAAAAGAGGAACTGAGTGG cctcccattttgtgtctacctctcttcattaacatttttatcttttctagTGGGAGGAGGAGTGGACGCCTCCTGGGAAAAGAGGAACTGAGTGGgtgagtgagtgaggttgggaaagcagaggtgcaggctgaatcctattgaa Alignment from Exonerate_protein2genome TGGGAGGAGGAGTGGACG-CTCCTGGGAAAAGAGGAACTGAGTGG cctcccattttgtgtctacctctcttcattaacatttttatcttttctagTGGGAGGAGGAGTGGACGCCTCCTGGGAAAAGAGGAACTGAGTGGgtgagtgagtgaggttgggaaagcagaggtgcaggctgaatcctattgaa Alignment from Exonerate_coding2genome TGGGAGGAGGAGTGGACG-CTCCTGGGAAAAGAGGAACTGAGTGG cctcccattttgtgtctacctctcttcattaacatttttatcttttctagTGGGAGGAGGAGTGGACGCCTCCTGGGAAAAGAGGAACTGAGTGGgtgagtgagtgaggttgggaaagcagaggtgcaggctgaatcctattgaa Alignment from GeneWise TGGGAGGAGGAGTGGACGCTCCTGGGAAAA---------GAGGAACTGAGTGG cctcccattttgtgtctacctctcttcattaacatttttatcttttctagTGGGAGGAGGAGTGGACGCCTCCTGGGAAAAGAGGAACTGAGTGGGTGAGTGAgtgaggttgggaaagcagaggtgcaggctgaatcctattgaa #### Map4k2_ID1637_16 --> 1 - 2 Original Alignment gAGCCTGCTGCAGTCAGTCCAG-GAGGCCCTGGAGGAAag caggctgaatcctattgaagattgactctttctttttataaaaaaaaaaggAGCCTGCTGCAGTCAGTCCAGCGAAGCTCTGGAGGACaggtaaatgccccacacttggtgagaaggggccttcaggcctggggaacagt Alignment from CESAR gAGCCTGCTGCAGTCAGTCCAG-GAGGCCCTGGAGGAAag caggctgaatcctattgaagattgactctttctttttataaaaaaaaaaggAGCCTGCTGCAGTCAGTCCAGCGAAGCTCTGGAGGACaggtaaatgccccacacttggtgagaaggggccttcaggcctggggaacagt Alignment from Spaln_aa2Genome GAGCCTGCTGCAGTCAGTCCAG-GAGGCCCTGGAGGAAAG caggctgaatcctattgaagattgactctttctttttataaaaaaaaaagGAGCCTGCTGCAGTCAGTCCAGcGAAGCTCTGGAGGACAGgtaaatgccccacacttggtgagaaggggccttcaggcctggggaacagt Alignment from Spaln_nt2Genome GAGCCTGCTGCAGTCAGTCCAG-GAGGCCCTGGAGGAAAG caggctgaatcctattgaagattgactctttctttttataaaaaaaaaagGAGCCTGCTGCAGTCAGTCCAGCGAAGCTCTGGAGGACAGgtaaatgccccacacttggtgagaaggggccttcaggcctggggaacagt Alignment from Pairagon GAGCCTGCTGCAGTCAGTCCAG-GAGGCCCTGGAGGAAAG caggctgaatcctattgaagattgactctttctttttataaaaaaaaaagGAGCCTGCTGCAGTCAGTCCAGCGAAGCTCTGGAGGACAGgtaaatgccccacacttggtgagaaggggccttcaggcctggggaacagt Alignment from Exonerate_protein2genome GAGCCTGCTGCAGTCAGTCCAG-GAGGCCCTGGAGGAAAG caggctgaatcctattgaagattgactctttctttttataaaaaaaaaagGAGCCTGCTGCAGTCAGTCCAGCGAAGCTCTGGAGGACAGgtaaatgccccacacttggtgagaaggggccttcaggcctggggaacagt Alignment from Exonerate_coding2genome caggctgaatcctattgaagattgactctttctttttataaaaaaaaaaggagcctgctgcagtcagtccagcgaagctctggaggacaggtaaatgccccacacttggtgagaaggggccttcaggcctggggaacagt Alignment from GeneWise GTGGGAGCCTGCTGCAGTCAGTCCAGG caggctgaatcctattgaagattgactctttctttttataaaaaaaaaaggagcctgctgcagtcagtccagcgaagctctggaggacaggtaaatgccccacacttggtgagAAGGGGCCTTCAGGCCTGGGGAACAGT #### Map4k2_ID1638_17 --> 1 - 0 Original Alignment gAGCCTGACTATCCGGCCA-GCCTTAGAACTCCAG gaacagtcccctctcacacacaatcatgatgcactgtggtttccctgcaggAGCCTGACTATCCGGCCACGCCTTAGAACTCCAGgttggtattgaagagtgtagtgcttgaaagtgactcatgagctagtgtgc Alignment from CESAR gAGCCTGACTATCCGGCCA-GCCTTAGAACTCCAG gaacagtcccctctcacacacaatcatgatgcactgtggtttccctgcaggAGCCTGACTATCCGGCCACGCCTTAGAACTCCAGgttggtattgaagagtgtagtgcttgaaagtgactcatgagctagtgtgc Alignment from Spaln_aa2Genome GAGCCTGACTATCCGGCCA-GCCTTAGAACTCCAG gaacagtcccctctcacacacaatcatgatgcactgtggtttccctgcagGAGCCTGACTATCCGGCCAcGCCTTAGAACTCCAGgttggtattgaagagtgtagtgcttgaaagtgactcatgagctagtgtgc Alignment from Spaln_nt2Genome GAGCCTGACTATCCGGCCA-GCCTTAGAACTCCAG gaacagtcccctctcacacacaatcatgatgcactgtggtttccctgcagGAGCCTGACTATCCGGCCACGCCTTAGAACTCCAGgttggtattgaagagtgtagtgcttgaaagtgactcatgagctagtgtgc Alignment from Pairagon GAGCCTGACTATCCGGCCA-GCCTTAGAACTCCAG gaacagtcccctctcacacacaatcatgatgcactgtggtttccctgcagGAGCCTGACTATCCGGCCACGCCTTAGAACTCCAGgttggtattgaagagtgtagtgcttgaaagtgactcatgagctagtgtgc Alignment from Exonerate_protein2genome GAGCCTGACTATCCGGCCA-GCCTTAGAACTCCAG gaacagtcccctctcacacacaatcatgatgcactgtggtttccctgcagGAGCCTGACTATCCGGCCACGCCTTAGAACTCCAGgttggtattgaagagtgtagtgcttgaaagtgactcatgagctagtgtgc Alignment from Exonerate_coding2genome gaacagtcccctctcacacacaatcatgatgcactgtggtttccctgcaggagcctgactatccggccacgccttagaactccaggttggtattgaagagtgtagtgcttgaaagtgactcatgagctagtgtgc Alignment from GeneWise gaacagtcccctctcacacacaatcatgatgcactgtggtttccctgcaggagcctgactatccggccacgccttagaactccaggttggtattgaagagtgtagtgcttgaaagtgactcatgagctagtgtgc #### Map4k2_ID1639_18 --> 0 - 1 Original Alignment GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCC-CACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAg tcacgggacacctgctaatgggaccaggttagtatctttctatttcccagGAGCTGGACTCCCCAGATGATGCCATTGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCCACACCGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAggtaagcccgagggctggcaggccacacagtattctggggtagtgctgggg Alignment from CESAR GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTG-CCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAg tcacgggacacctgctaatgggaccaggttagtatctttctatttcccagGAGCTGGACTCCCCAGATGATGCCATTGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCCACACCGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAggtaagcccgagggctggcaggccacacagtattctggggtagtgctgggg Alignment from Spaln_aa2Genome GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTG-CCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG tcacgggacacctgctaatgggaccaggttagtatctttctatttcccagGAGCTGGACTCCCCAGATGATGCCATTGGAACCATCAAACGGGCTCCATTTTTGGGGCTGcCCCCACACCGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAGgtaagcccgagggctggcaggccacacagtattctggggtagtgctgggg Alignment from Spaln_nt2Genome GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTG-CCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG tcacgggacacctgctaatgggaccaggttagtatctttctatttcccagGAGCTGGACTCCCCAGATGATGCCATTGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCCACACCGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAGgtaagcccgagggctggcaggccacacagtattctggggtagtgctgggg Alignment from Pairagon GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTG-CCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG tcacgggacacctgctaatgggaccaggttagtatctttctatttcccagGAGCTGGACTCCCCAGATGATGCCATTGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCCACACCGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAGgtaagcccgagggctggcaggccacacagtattctggggtagtgctgggg Alignment from Exonerate_protein2genome GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTG-CCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG tcacgggacacctgctaatgggaccaggttagtatctttctatttcccagGAGCTGGACTCCCCAGATGATGCCATTGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCCACACCGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAGgtaagcccgagggctggcaggccacacagtattctggggtagtgctgggg Alignment from Exonerate_coding2genome GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGCTG-CCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG tcacgggacacctgctaatgggaccaggttagtatctttctatttcccagGAGCTGGACTCCCCAGATGATGCCATTGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCCACACCGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAGgtaagcccgagggctggcaggccacacagtattctggggtagtgctgggg Alignment from GeneWise GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGG-CTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG tcacgggacacctgctaatgggaccaggttagtatctttctatttcccagGAGCTGGACTCCCCAGATGATGCCATTGGAACCATCAAACGGGCTCCATTTTTGGGGCTGCCCCCACACCGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAGgtaagcccgagggctggcaggccacacagtattctggggtagtgctgggg #### Map4k2_ID1640_19 --> 2 - 0 Original Alignment gtACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTG-AAGCAACAGGAGGATCGTGAG ctggggtagtgctggggcttggcatcacgaactggcccttcctgttacaggtACCTTATCAGCGCCTCCAGCTGGCCCAGATAGCCCCGCATTGCTACCTACTGCTTGGGCTACTCTGCAAGCAACAGGAGGATCGTGAGgtaagcgagacggcagaagggtgggagtgatgctgcagggcgccatccag Alignment from CESAR gtACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTG-AAGCAACAGGAGGATCGTGAG ctggggtagtgctggggcttggcatcacgaactggcccttcctgttacaggtACCTTATCAGCGCCTCCAGCTGGCCCAGATAGCCCCGCATTGCTACCTACTGCTTGGGCTACTCTGCAAGCAACAGGAGGATCGTGAGgtaagcgagacggcagaagggtgggagtgatgctgcagggcgccatccag Alignment from Spaln_aa2Genome GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTG-AAGCAACAGGAGGATCGTGAG ctggggtagtgctggggcttggcatcacgaactggcccttcctgttacagGTACCTTATCAGCGCCTCCAGCTGGCCCAGATAGCCCCGCATTGCTACCTACTGCTTGGGCTACTCTGcAAGCAACAGGAGGATCGTGAGgtaagcgagacggcagaagggtgggagtgatgctgcagggcgccatccag Alignment from Spaln_nt2Genome GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGA-AGCAACAGGAGGATCGTGAG ctggggtagtgctggggcttggcatcacgaactggcccttcctgttacagGTACCTTATCAGCGCCTCCAGCTGGCCCAGATAGCCCCGCATTGCTACCTACTGCTTGGGCTACTCTGCAAGCAACAGGAGGATCGTGAGgtaagcgagacggcagaagggtgggagtgatgctgcagggcgccatccag Alignment from Pairagon GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTG-AAGCAACAGGAGGATCGTGAG ctggggtagtgctggggcttggcatcacgaactggcccttcctgttacagGTACCTTATCAGCGCCTCCAGCTGGCCCAGATAGCCCCGCATTGCTACCTACTGCTTGGGCTACTCTGCAAGCAACAGGAGGATCGTGAGgtaagcgagacggcagaagggtgggagtgatgctgcagggcgccatccag Alignment from Exonerate_protein2genome GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTG-AAGCAACAGGAGGATCGTGAG ctggggtagtgctggggcttggcatcacgaactggcccttcctgttacagGTACCTTATCAGCGCCTCCAGCTGGCCCAGATAGCCCCGCATTGCTACCTACTGCTTGGGCTACTCTGCAAGCAACAGGAGGATCGTGAGgtaagcgagacggcagaagggtgggagtgatgctgcagggcgccatccag Alignment from Exonerate_coding2genome GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTG-AAGCAACAGGAGGATCGTGAG ctggggtagtgctggggcttggcatcacgaactggcccttcctgttacagGTACCTTATCAGCGCCTCCAGCTGGCCCAGATAGCCCCGCATTGCTACCTACTGCTTGGGCTACTCTGCAAGCAACAGGAGGATCGTGAGgtaagcgagacggcagaagggtgggagtgatgctgcagggcgccatccag Alignment from GeneWise GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACT-CTGAAGCAACAGGAGGATCGTGAG ctggggtagtgctggggcttggcatcacgaactggcccttcctgttacagGTACCTTATCAGCGCCTCCAGCTGGCCCAGATAGCCCCGCATTGCTACCTACTGCTTGGGCTACTCTGCAAGCAACAGGAGGATCGTGAGgtaagcgagacggcagaagggtgggagtgatgctgcagggcgccatccag #### Map4k2_ID1642_21 --> 0 - 1 Original Alignment ATGGGTGCCTGCTTCTCCAAGGTCTTCAAT-GGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAg tgacaagtgtagggtagttgtaagttggttccccctctgtccccccaaagATGGGTGCCTGCTTCTCCAAGGTCTTTAATCGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAggtacgtgaaggtagagcagaagcaataacataggacaccctgaccctggg Alignment from CESAR ATGGGTGCCTGCTTCTCCAAGGTCTTCAAT-GGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAg tgacaagtgtagggtagttgtaagttggttccccctctgtccccccaaagATGGGTGCCTGCTTCTCCAAGGTCTTTAATCGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAggtacgtgaaggtagagcagaagcaataacataggacaccctgaccctggg Alignment from Spaln_aa2Genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAAT-GGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgacaagtgtagggtagttgtaagttggttccccctctgtccccccaaagATGGGTGCCTGCTTCTCCAAGGTCTTTAATcGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAGgtacgtgaaggtagagcagaagcaataacataggacaccctgaccctggg Alignment from Spaln_nt2Genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAAT-GGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgacaagtgtagggtagttgtaagttggttccccctctgtccccccaaagATGGGTGCCTGCTTCTCCAAGGTCTTTAATCGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAGgtacgtgaaggtagagcagaagcaataacataggacaccctgaccctggg Alignment from Pairagon ATGGGTGCCTGCTTCTCCAAGGTCTTCAAT-GGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgacaagtgtagggtagttgtaagttggttccccctctgtccccccaaagATGGGTGCCTGCTTCTCCAAGGTCTTTAATCGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAGgtacgtgaaggtagagcagaagcaataacataggacaccctgaccctggg Alignment from Exonerate_protein2genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAAT-GGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgacaagtgtagggtagttgtaagttggttccccctctgtccccccaaagATGGGTGCCTGCTTCTCCAAGGTCTTTAATCGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAGgtacgtgaaggtagagcagaagcaataacataggacaccctgaccctggg Alignment from Exonerate_coding2genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAAT-GGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgacaagtgtagggtagttgtaagttggttccccctctgtccccccaaagATGGGTGCCTGCTTCTCCAAGGTCTTTAATCGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAGgtacgtgaaggtagagcagaagcaataacataggacaccctgaccctggg Alignment from GeneWise ATGGGTGCCTGCTTCTCCAAGGTCTTCAAT-GGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG tgacaagtgtagggtagttgtaagttggttccccctctgtccccccaaagATGGGTGCCTGCTTCTCCAAGGTCTTTAATCGGCTGCCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAGgtacgtgaaggtagagcagaagcaataacataggacaccctgaccctggg #### Map4k2_ID1644_23 --> 0 - 1 Original Alignment CTCATCTCCCAG-CGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAg aggcaaaggatggtggctactgaccaccctgacatccttctttccttcagCTCATCTCCCAGCCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCACTCTCAggtatgtgctggcagatgtagaggcagccaggacagcactctcctaatttc Alignment from CESAR CTCATCTCCCAG-CGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAg aggcaaaggatggtggctactgaccaccctgacatccttctttccttcagCTCATCTCCCAGCCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCACTCTCAggtatgtgctggcagatgtagaggcagccaggacagcactctcctaatttc Alignment from Spaln_aa2Genome -CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG aggcaaaggatggtggctactgaccaccctgacatccttctttccttcagCTCATCTCCCAGCCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCACTCTCAGgtatgtgctggcagatgtagaggcagccaggacagcactctcctaatttc Alignment from Spaln_nt2Genome CTCATCTCCCAGC-GCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG aggcaaaggatggtggctactgaccaccctgacatccttctttccttcagCTCATCTCCCAGCCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCACTCTCAGgtatgtgctggcagatgtagaggcagccaggacagcactctcctaatttc Alignment from Pairagon CTCATCTCCCAG-CGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG aggcaaaggatggtggctactgaccaccctgacatccttctttccttcagCTCATCTCCCAGCCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCACTCTCAGgtatgtgctggcagatgtagaggcagccaggacagcactctcctaatttc Alignment from Exonerate_protein2genome CTCATCTCCCAG-CGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG aggcaaaggatggtggctactgaccaccctgacatccttctttccttcagCTCATCTCCCAGCCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCACTCTCAGgtatgtgctggcagatgtagaggcagccaggacagcactctcctaatttc Alignment from Exonerate_coding2genome CTCATCTCCCAG-CGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG aggcaaaggatggtggctactgaccaccctgacatccttctttccttcagCTCATCTCCCAGCCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCACTCTCAGgtatgtgctggcagatgtagaggcagccaggacagcactctcctaatttc Alignment from GeneWise ------------------------------------CTCATCTCC---------------CAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG AGGCAAAGGATGGTGGCTACTGACCACCCTGACATCCTTCTTTCCTTCAGCTCATCTCCCAGCCGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCACTCTCAGgtatgtgctggcagatgtagaggcagccaggacagcactctcctaatttc #### Map4k2_ID1651_30 --> 2 - 0 Original Alignment tgTGTCTGCAGGATAGTGTGCTGGCGTTCTGGAGCCAT-GGCATGCAGGGCCGAAGCCTCGATACCAACGAG acagttgtagagtgcagggatagtgcagagctgttgttctccctgtccagtgTGTCTGCAGGATAGTGTGCTGGCGTTCTGGAGCCATCGGCATGCAGGGCCGAAGCCTTGATACCAACGAGgtgagtgaccctagggccctaattacctccctgaggccctatcctgagag Alignment from CESAR tgTGTCTGCAGGATAGTGTGCTGGCGTTCTGGAGCCAT-GGCATGCAGGGCCGAAGCCTCGATACCAACGAG acagttgtagagtgcagggatagtgcagagctgttgttctccctgtccagtgTGTCTGCAGGATAGTGTGCTGGCGTTCTGGAGCCATCGGCATGCAGGGCCGAAGCCTTGATACCAACGAGgtgagtgaccctagggccctaattacctccctgaggccctatcctgagag Alignment from Spaln_aa2Genome TGTGTCTGCAGGATAGTGTGCTGGCGTTCTGGAGCCAT-GGCATGCAGGGCCGAAGCCTCGATACCAACGAG acagttgtagagtgcagggatagtgcagagctgttgttctccctgtccagTGTGTCTGCAGGATAGTGTGCTGGCGTTCTGGAGCCATcGGCATGCAGGGCCGAAGCCTTGATACCAACGAGgtgagtgaccctagggccctaattacctccctgaggccctatcctgagag Alignment from Spaln_nt2Genome TGTGTCTGCAGGATAGTGTGCTGGCGTTCTGGAGCCAT-GGCATGCAGGGCCGAAGCCTCGATACCAACGAG acagttgtagagtgcagggatagtgcagagctgttgttctccctgtccagTGTGTCTGCAGGATAGTGTGCTGGCGTTCTGGAGCCATCGGCATGCAGGGCCGAAGCCTTGATACCAACGAGgtgagtgaccctagggccctaattacctccctgaggccctatcctgagag Alignment from Pairagon TGTGTCTGCAGGATAGTGTGCTGGCGTTCTGGAGCCAT-GGCATGCAGGGCCGAAGCCTCGATACCAACGAG acagttgtagagtgcagggatagtgcagagctgttgttctccctgtccagTGTGTCTGCAGGATAGTGTGCTGGCGTTCTGGAGCCATCGGCATGCAGGGCCGAAGCCTTGATACCAACGAGgtgagtgaccctagggccctaattacctccctgaggccctatcctgagag Alignment from Exonerate_protein2genome TGTGTCTGCAGGATAGTGTGCTGGCGTTCTGGAGCCAT-GGCATGCAGGGCCGAAGCCTCGATACCAACGAG acagttgtagagtgcagggatagtgcagagctgttgttctccctgtccagTGTGTCTGCAGGATAGTGTGCTGGCGTTCTGGAGCCATCGGCATGCAGGGCCGAAGCCTTGATACCAACGAGgtgagtgaccctagggccctaattacctccctgaggccctatcctgagag Alignment from Exonerate_coding2genome TGTGTCTGCAGGATAGTGTGCTGGCGTTCTGGAGCCAT-GGCATGCAGGGCCGAAGCCTCGATACCAACGAG acagttgtagagtgcagggatagtgcagagctgttgttctccctgtccagTGTGTCTGCAGGATAGTGTGCTGGCGTTCTGGAGCCATCGGCATGCAGGGCCGAAGCCTTGATACCAACGAGgtgagtgaccctagggccctaattacctccctgaggccctatcctgagag Alignment from GeneWise TGTGTCTGCAGGATAGTGTGCTGGCGTTCTGGAGCCAT-GGCATGCAGGGCCGAAGCCTCGATACCAACGAG acagttgtagagtgcagggatagtgcagagctgttgttctccctgtccagTGTGTCTGCAGGATAGTGTGCTGGCGTTCTGGAGCCATCGGCATGCAGGGCCGAAGCCTTGATACCAACGAGgtgagtgaccctagggccctaattacctccctgaggccctatcctgagag #### Map4k2_ID1652_31 --> 0 - 2 Original Alignment GTGACGCAGGAGATA-ACAGATGAGACCAGGATCTTCCGAGTACTGGGGGCTCACag ctgagaggattattgggatggcctcaggacactatattttgtcttttcagGTGACACAGGAGATACACAGATGAGGCCAGGATCTTCCGAGTACTGGGGGCCCACaggtcagtgcaataaacctttaatttcagatgctgcccccaggctaggtttg Alignment from CESAR GTGACGCAGGAGATA-ACAGATGAGACCAGGATCTTCCGAGTACTGGGGGCTCACag ctgagaggattattgggatggcctcaggacactatattttgtcttttcagGTGACACAGGAGATACACAGATGAGGCCAGGATCTTCCGAGTACTGGGGGCCCACaggtcagtgcaataaacctttaatttcagatgctgcccccaggctaggtttg Alignment from Spaln_aa2Genome GTGACGCAGGAGATA-ACAGATGAGACCAGGATCTTCCGAGTACTGGGGGCTCACAG ctgagaggattattgggatggcctcaggacactatattttgtcttttcagGTGACACAGGAGATAcACAGATGAGGCCAGGATCTTCCGAGTACTGGGGGCCCACAGgtcagtgcaataaacctttaatttcagatgctgcccccaggctaggtttg Alignment from Spaln_nt2Genome GTGACGCAGGAGATA-ACAGATGAGACCAGGATCTTCCGAGTACTGGGGGCTCACAG ctgagaggattattgggatggcctcaggacactatattttgtcttttcagGTGACACAGGAGATACACAGATGAGGCCAGGATCTTCCGAGTACTGGGGGCCCACAGgtcagtgcaataaacctttaatttcagatgctgcccccaggctaggtttg Alignment from Pairagon GTGACGCAGGAGATA-ACAGATGAGACCAGGATCTTCCGAGTACTGGGGGCTCACAG ctgagaggattattgggatggcctcaggacactatattttgtcttttcagGTGACACAGGAGATACACAGATGAGGCCAGGATCTTCCGAGTACTGGGGGCCCACAGgtcagtgcaataaacctttaatttcagatgctgcccccaggctaggtttg Alignment from Exonerate_protein2genome GTGACGCAGGAGATA-ACAGATGAGACCAGGATCTTCCGAGTACTGGGGGCTCACAG ctgagaggattattgggatggcctcaggacactatattttgtcttttcagGTGACACAGGAGATACACAGATGAGGCCAGGATCTTCCGAGTACTGGGGGCCCACAGgtcagtgcaataaacctttaatttcagatgctgcccccaggctaggtttg Alignment from Exonerate_coding2genome GTGACGCAGGAGATA-ACAGATGAGACCAGGATCTTCCGAGTACTGGGGGCTCACAG ctgagaggattattgggatggcctcaggacactatattttgtcttttcagGTGACACAGGAGATACACAGATGAGGCCAGGATCTTCCGAGTACTGGGGGCCCACAGgtcagtgcaataaacctttaatttcagatgctgcccccaggctaggtttg Alignment from GeneWise AGACCAGGATCTTCCGAGTACTGGGGGCTCAC------AG CTGAGAGGATTATTGGGATGGCCTCAGGACACTATATTTTgtcttttcaggtgacacaggagatacacagatgaggccaggatcttccgagtactgggggcccacaggtcagtgcaataaacctttaatttcagatgctgcccccaggctaggtttg #### Mark2_ID2107_14 --> 0 - 2 Original Alignment AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGG-AACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACag agtctgctcgggcaacactagagtgcattgcactcttgctctctccccagAACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGCAACTCCCCGCTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACaggtaacttatctggactgcttagcatggtcccaggggtggcttcaacagtg Alignment from CESAR AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGG-AACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACag agtctgctcgggcaacactagagtgcattgcactcttgctctctccccagAACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGCAACTCCCCGCTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACaggtaacttatctggactgcttagcatggtcccaggggtggcttcaacagtg Alignment from Spaln_aa2Genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGG-AACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agtctgctcgggcaacactagagtgcattgcactcttgctctctccccagAACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGcAACTCCCCGCTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACAGgtaacttatctggactgcttagcatggtcccaggggtggcttcaacagtg Alignment from Spaln_nt2Genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGG-AACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agtctgctcgggcaacactagagtgcattgcactcttgctctctccccagAACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGCAACTCCCCGCTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACAGgtaacttatctggactgcttagcatggtcccaggggtggcttcaacagtg Alignment from Pairagon AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGG-AACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agtctgctcgggcaacactagagtgcattgcactcttgctctctccccagAACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGCAACTCCCCGCTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACAGgtaacttatctggactgcttagcatggtcccaggggtggcttcaacagtg Alignment from Exonerate_protein2genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGG-AACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agtctgctcgggcaacactagagtgcattgcactcttgctctctccccagAACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGCAACTCCCCGCTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACAGgtaacttatctggactgcttagcatggtcccaggggtggcttcaacagtg Alignment from Exonerate_coding2genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGG-AACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agtctgctcgggcaacactagagtgcattgcactcttgctctctccccagAACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGCAACTCCCCGCTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACAGgtaacttatctggactgcttagcatggtcccaggggtggcttcaacagtg Alignment from GeneWise AACAGCGTCCTTTCCACCAGCACAAACCGAAGC-AGGAACTCCCCACTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agtctgctcgggcaacactagagtgcattgcactcttgctctctccccagAACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGCAACTCCCCGCTTTTGGACAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACAGgtaacttatctggactgcttagcatggtcccaggggtggcttcaacagtg #### Mark2_ID2108_13 --> 2 - 0 Original Alignment ccGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCT-GGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggatcttcaggggactgtagtcttagcttgtacttttttccttatagccGTCCCTGCCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAGACGGGGCGGAAAGCCAGCAGCACTGCCAAAGTGCCCACCAGCCCTCTGCCACGGCCTGGACAGGAAGAAGACTACACCTGCGCCCTCCACAgtaagtcttgagctactaccctctggcctggcctccctcttctccgctca Alignment from CESAR ccGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCT-GGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggatcttcaggggactgtagtcttagcttgtacttttttccttatagccGTCCCTGCCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAGACGGGGCGGAAAGCCAGCAGCACTGCCAAAGTGCCCACCAGCCCTCTGCCACGGCCTGGACAGGAAGAAGACTACACCTGCGCCCTCCACAgtaagtcttgagctactaccctctggcctggcctccctcttctccgctca Alignment from Spaln_aa2Genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCT-GGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggatcttcaggggactgtagtcttagcttgtacttttttccttatagCCGTCCCTGCCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAGACGGGGCGGAAAGCCAGCAGCACTGCCAAAGTGCCCACCAGCCCTCTGCCAcGGCCTGGACAGGAAGAAGACTACACCTGCGCCCTCCACAgtaagtcttgagctactaccctctggcctggcctccctcttctccgctca Alignment from Spaln_nt2Genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCT-GGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggatcttcaggggactgtagtcttagcttgtacttttttccttatagCCGTCCCTGCCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAGACGGGGCGGAAAGCCAGCAGCACTGCCAAAGTGCCCACCAGCCCTCTGCCACGGCCTGGACAGGAAGAAGACTACACCTGCGCCCTCCACAgtaagtcttgagctactaccctctggcctggcctccctcttctccgctca Alignment from Pairagon CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCC-TGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggatcttcaggggactgtagtcttagcttgtacttttttccttatagCCGTCCCTGCCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAGACGGGGCGGAAAGCCAGCAGCACTGCCAAAGTGCCCACCAGCCCTCTGCCACGGCCTGGACAGGAAGAAGACTACACCTGCGCCCTCCACAgtaagtcttgagctactaccctctggcctggcctccctcttctccgctca Alignment from Exonerate_protein2genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCT-GGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggatcttcaggggactgtagtcttagcttgtacttttttccttatagCCGTCCCTGCCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAGACGGGGCGGAAAGCCAGCAGCACTGCCAAAGTGCCCACCAGCCCTCTGCCACGGCCTGGACAGGAAGAAGACTACACCTGCGCCCTCCACAgtaagtcttgagctactaccctctggcctggcctccctcttctccgctca Alignment from Exonerate_coding2genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCT-GGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggatcttcaggggactgtagtcttagcttgtacttttttccttatagCCGTCCCTGCCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAGACGGGGCGGAAAGCCAGCAGCACTGCCAAAGTGCCCACCAGCCCTCTGCCACGGCCTGGACAGGAAGAAGACTACACCTGCGCCCTCCACAgtaagtcttgagctactaccctctggcctggcctccctcttctccgctca Alignment from GeneWise CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCT-GGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggatcttcaggggactgtagtcttagcttgtacttttttccttatagCCGTCCCTGCCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAGACGGGGCGGAAAGCCAGCAGCACTGCCAAAGTGCCCACCAGCCCTCTGCCACGGCCTGGACAGGAAGAAGACTACACCTGCGCCCTCCACAgtaagtcttgagctactaccctctggcctggcctccctcttctccgctca #### Mark2_ID2112_9 --> 0 - 0 Original Alignment GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATA-CTTAATCCTAGTAAGAGAGGCACTTTAGAG tgaggcagcaaagccttacatgtcagtcctttcctccatactaatttcagGAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACTGACTGTGAAAATCTGCTTAAGAAATTCCTCATACCTTAATCCTAGTAAGAGAGGCACTTTAGAGgtgaggaacctaaaatcccagtcggcaagggaaaatcccaattttcccat Alignment from CESAR GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATA-CTTAATCCTAGTAAGAGAGGCACTTTAGAG tgaggcagcaaagccttacatgtcagtcctttcctccatactaatttcagGAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACTGACTGTGAAAATCTGCTTAAGAAATTCCTCATACCTTAATCCTAGTAAGAGAGGCACTTTAGAGgtgaggaacctaaaatcccagtcggcaagggaaaatcccaattttcccat Alignment from Spaln_aa2Genome GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATA-CTTAATCCTAGTAAGAGAGGCACTTTAGAG tgaggcagcaaagccttacatgtcagtcctttcctccatactaatttcagGAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACTGACTGTGAAAATCTGCTTAAGAAATTCCTCATAcCTTAATCCTAGTAAGAGAGGCACTTTAGAGgtgaggaacctaaaatcccagtcggcaagggaaaatcccaattttcccat Alignment from Spaln_nt2Genome GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATA-CTTAATCCTAGTAAGAGAGGCACTTTAGAG tgaggcagcaaagccttacatgtcagtcctttcctccatactaatttcagGAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACTGACTGTGAAAATCTGCTTAAGAAATTCCTCATACCTTAATCCTAGTAAGAGAGGCACTTTAGAGgtgaggaacctaaaatcccagtcggcaagggaaaatcccaattttcccat Alignment from Pairagon GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATA-CTTAATCCTAGTAAGAGAGGCACTTTAGAG tgaggcagcaaagccttacatgtcagtcctttcctccatactaatttcagGAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACTGACTGTGAAAATCTGCTTAAGAAATTCCTCATACCTTAATCCTAGTAAGAGAGGCACTTTAGAGgtgaggaacctaaaatcccagtcggcaagggaaaatcccaattttcccat Alignment from Exonerate_protein2genome GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATA-CTTAATCCTAGTAAGAGAGGCACTTTAGAG tgaggcagcaaagccttacatgtcagtcctttcctccatactaatttcagGAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACTGACTGTGAAAATCTGCTTAAGAAATTCCTCATACCTTAATCCTAGTAAGAGAGGCACTTTAGAGgtgaggaacctaaaatcccagtcggcaagggaaaatcccaattttcccat Alignment from Exonerate_coding2genome GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATA-CTTAATCCTAGTAAGAGAGGCACTTTAGAG tgaggcagcaaagccttacatgtcagtcctttcctccatactaatttcagGAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACTGACTGTGAAAATCTGCTTAAGAAATTCCTCATACCTTAATCCTAGTAAGAGAGGCACTTTAGAGgtgaggaacctaaaatcccagtcggcaagggaaaatcccaattttcccat Alignment from GeneWise GAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACGGACTGTGAAAATCTGCTTAAGAAATTTCTCATA-CTTAATCCTAGTAAGAGAGGCACTTTAGAG tgaggcagcaaagccttacatgtcagtcctttcctccatactaatttcagGAGCTGCGGGAACGGGTACTGAGGGGGAAATACCGTATTCCGTTCTACATGTCCACTGACTGTGAAAATCTGCTTAAGAAATTCCTCATACCTTAATCCTAGTAAGAGAGGCACTTTAGAGgtgaggaacctaaaatcccagtcggcaagggaaaatcccaattttcccat #### Mrpl11_ID767_2 --> 0 - 0 Original Alignment CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAAC-GAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tagaaagatttcagctctcatacttaacaacgccaccttcctgtctgcagCGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACCGAGAAGACGAAGGACATCAAAGAAGGCATTCCTCTGGCTACAAAAATTTTCATAAAGgttggtagacccattctcccatatatttcattggccctagaaactagtca Alignment from CESAR CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAAC-GAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tagaaagatttcagctctcatacttaacaacgccaccttcctgtctgcagCGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACCGAGAAGACGAAGGACATCAAAGAAGGCATTCCTCTGGCTACAAAAATTTTCATAAAGgttggtagacccattctcccatatatttcattggccctagaaactagtca Alignment from Spaln_aa2Genome CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAAC-GAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tagaaagatttcagctctcatacttaacaacgccaccttcctgtctgcagCGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACcGAGAAGACGAAGGACATCAAAGAAGGCATTCCTCTGGCTACAAAAATTTTCATAAAGgttggtagacccattctcccatatatttcattggccctagaaactagtca Alignment from Spaln_nt2Genome CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAA-CGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tagaaagatttcagctctcatacttaacaacgccaccttcctgtctgcagCGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACCGAGAAGACGAAGGACATCAAAGAAGGCATTCCTCTGGCTACAAAAATTTTCATAAAGgttggtagacccattctcccatatatttcattggccctagaaactagtca Alignment from Pairagon CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAA-CGAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tagaaagatttcagctctcatacttaacaacgccaccttcctgtctgcagCGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACCGAGAAGACGAAGGACATCAAAGAAGGCATTCCTCTGGCTACAAAAATTTTCATAAAGgttggtagacccattctcccatatatttcattggccctagaaactagtca Alignment from Exonerate_protein2genome CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAAC-GAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tagaaagatttcagctctcatacttaacaacgccaccttcctgtctgcagCGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACCGAGAAGACGAAGGACATCAAAGAAGGCATTCCTCTGGCTACAAAAATTTTCATAAAGgttggtagacccattctcccatatatttcattggccctagaaactagtca Alignment from Exonerate_coding2genome CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAAC-GAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tagaaagatttcagctctcatacttaacaacgccaccttcctgtctgcagCGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACCGAGAAGACGAAGGACATCAAAGAAGGCATTCCTCTGGCTACAAAAATTTTCATAAAGgttggtagacccattctcccatatatttcattggccctagaaactagtca Alignment from GeneWise CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAAC-GAGAAGACAAAGGACATCAAAGAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tagaaagatttcagctctcatacttaacaacgccaccttcctgtctgcagCGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACCGAGAAGACGAAGGACATCAAAGAAGGCATTCCTCTGGCTACAAAAATTTTCATAAAGgttggtagacccattctcccatatatttcattggccctagaaactagtca #### Mrpl11_ID768_3 --> 0 - 1 Original Alignment CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAG-GCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAg ttgaactggatggaaaatggagagattctctaattttgttaattctctagCCTGACAGGACTTTTGAGCTCAAGATTGGGCAGCCCACTGTTTCGTACTTGCTGAAGCGCAGCTGCTGGGATTGAGAAGGGAGCTCGGCATACAggtaagcactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from CESAR CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAG-GCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAg ttgaactggatggaaaatggagagattctctaattttgttaattctctagCCTGACAGGACTTTTGAGCTCAAGATTGGGCAGCCCACTGTTTCGTACTTGCTGAAGCGCAGCTGCTGGGATTGAGAAGGGAGCTCGGCATACAggtaagcactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from Spaln_aa2Genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAG-GCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatggaaaatggagagattctctaattttgttaattctctagCCTGACAGGACTTTTGAGCTCAAGATTGGGCAGCCCACTGTTTCGTACTTGCTGAAGcGCAGCTGCTGGGATTGAGAAGGGAGCTCGGCATACAGgtaagcactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from Spaln_nt2Genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAG-GCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatggaaaatggagagattctctaattttgttaattctctagCCTGACAGGACTTTTGAGCTCAAGATTGGGCAGCCCACTGTTTCGTACTTGCTGAAGCGCAGCTGCTGGGATTGAGAAGGGAGCTCGGCATACAGgtaagcactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from Pairagon CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAG-GCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatggaaaatggagagattctctaattttgttaattctctagCCTGACAGGACTTTTGAGCTCAAGATTGGGCAGCCCACTGTTTCGTACTTGCTGAAGCGCAGCTGCTGGGATTGAGAAGGGAGCTCGGCATACAGgtaagcactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from Exonerate_protein2genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAG-GCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatggaaaatggagagattctctaattttgttaattctctagCCTGACAGGACTTTTGAGCTCAAGATTGGGCAGCCCACTGTTTCGTACTTGCTGAAGCGCAGCTGCTGGGATTGAGAAGGGAGCTCGGCATACAGgtaagcactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from Exonerate_coding2genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGC---AGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatggaaaatggagagattctctaattttgttaattctctagCCTGACAGGACTTTTGAGCTCAAGATTGGGCAGCCCACTGTTTCGTACTTGCTGAAG--CGCAGCTGCTGGGATTGAGAAGGGAGCTCGGCATACAGgtaagcactagattgggcagctgggtgtctgatgaatctggagaaatgta Alignment from GeneWise CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAG-GCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatggaaaatggagagattctctaattttgttaattctctagCCTGACAGGACTTTTGAGCTCAAGATTGGGCAGCCCACTGTTTCGTACTTGCTGAAGCGCAGCTGCTGGGATTGAGAAGGGAGCTCGGCATACAGgtaagcactagattgggcagctgggtgtctgatgaatctggagaaatgta #### Mrpl43_ID9260_2 --> 1 - 1 Original Alignment gGAGTTCGTGGAACGC-GAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACc ctatggggccgggtgcaggccactctacgcctcgtctgtcccaatgccaggGAGTTGGTGGAACGTCGAGGTGACTGACTTTGCCCGACGGAACCCAGGAGTTGTGGTATACGTGAACCCACGGCCATGCGCCATGCCGCGAATAGTGGCAGAATACcgtaagtggagctgagtgagggcaggggtgtgcagggcaggattccagctg Alignment from CESAR gGAGTTCGTGGAACGC-GAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACc ctatggggccgggtgcaggccactctacgcctcgtctgtcccaatgccaggGAGTTGGTGGAACGTCGAGGTGACTGACTTTGCCCGACGGAACCCAGGAGTTGTGGTATACGTGAACCCACGGCCATGCGCCATGCCGCGAATAGTGGCAGAATACcgtaagtggagctgagtgagggcaggggtgtgcagggcaggattccagctg Alignment from Spaln_aa2Genome GGAGTTCGTGGAACGC-GAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ctatggggccgggtgcaggccactctacgcctcgtctgtcccaatgccagGGAGTTGGTGGAACGTcGAGGTGACTGACTTTGCCCGACGGAACCCAGGAGTTGTGGTATACGTGAACCCACGGCCATGCGCCATGCCGCGAATAGTGGCAGAATACCgtaagtggagctgagtgagggcaggggtgtgcagggcaggattccagctg Alignment from Spaln_nt2Genome GGAGTTCGTGGAACG-CGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ctatggggccgggtgcaggccactctacgcctcgtctgtcccaatgccagGGAGTTGGTGGAACGTCGAGGTGACTGACTTTGCCCGACGGAACCCAGGAGTTGTGGTATACGTGAACCCACGGCCATGCGCCATGCCGCGAATAGTGGCAGAATACCgtaagtggagctgagtgagggcaggggtgtgcagggcaggattccagctg Alignment from Pairagon GGAGTTCGTGGAACG-CGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ctatggggccgggtgcaggccactctacgcctcgtctgtcccaatgccagGGAGTTGGTGGAACGTCGAGGTGACTGACTTTGCCCGACGGAACCCAGGAGTTGTGGTATACGTGAACCCACGGCCATGCGCCATGCCGCGAATAGTGGCAGAATACCgtaagtggagctgagtgagggcaggggtgtgcagggcaggattccagctg Alignment from Exonerate_protein2genome GGAGTTCGTGGAACGC-GAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ctatggggccgggtgcaggccactctacgcctcgtctgtcccaatgccagGGAGTTGGTGGAACGTCGAGGTGACTGACTTTGCCCGACGGAACCCAGGAGTTGTGGTATACGTGAACCCACGGCCATGCGCCATGCCGCGAATAGTGGCAGAATACCgtaagtggagctgagtgagggcaggggtgtgcagggcaggattccagctg Alignment from Exonerate_coding2genome GGAGTTCGTGGAACGC-GAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ctatggggccgggtgcaggccactctacgcctcgtctgtcccaatgccagGGAGTTGGTGGAACGTCGAGGTGACTGACTTTGCCCGACGGAACCCAGGAGTTGTGGTATACGTGAACCCACGGCCATGCGCCATGCCGCGAATAGTGGCAGAATACCgtaagtggagctgagtgagggcaggggtgtgcagggcaggattccagctg Alignment from GeneWise GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC ctatggggccgggtgcaggccactctacgcctcgtctgtcccaatgccagggagT---TGGTGGAACGTCGAGGTGACTGACTTTGCCCGACGGAACCCAGGAGTTGTGGTATACGTGAACCCACGGCCATGCGCCATGCCGCGAATAGTGGCAGAATACCgtaagtggagctgagtgagggcaggggtgtgcagggcaggattccagctg #### Mta2_ID2532_5 --> 1 - 0 Original Alignment gGGGAAGTGCAGCGTGACT-CTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG ggtatgatggactgctcatccaggatttgcatatctggtttctgtttcaggGTAAAGTGCAGCGTGACTCCTCTTGAATGAGACAGACATCTTAAACCAGTATCTAGACAAGGAAgtaagtacccattgggataagaggggggtgagagagtgttgcccctcgag Alignment from CESAR gGGGAAGTGCAGCGTGACT-CTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG ggtatgatggactgctcatccaggatttgcatatctggtttctgtttcaggGTAAAGTGCAGCGTGACTCCTCTTGAATGAGACAGACATCTTAAACCAGTATCTAGACAAGGAAgtaagtacccattgggataagaggggggtgagagagtgttgcccctcgag Alignment from Spaln_aa2Genome GGGGAAGTGCAGCGTGACT-CTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG ggtatgatggactgctcatccaggatttgcatatctggtttctgtttcagGGTAAAGTGCAGCGTGACTcCTCTTGAATGAGACAGACATCTTAAACCAGTATCTAGACAAGGAAgtaagtacccattgggataagaggggggtgagagagtgttgcccctcgag Alignment from Spaln_nt2Genome ggtatgatggactgctcatccaggatttgcatatctggtttctgtttcagggtaaagtgcagcgtgactcctcttgaatgagacagacatcttaaaccagtatctagacaaggaagtaagtacccattgggataagaggggggtgagagagtgttgcccctcgag Alignment from Pairagon GGGGAAGTGCAGCGTGACT-CTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG ggtatgatggactgctcatccaggatttgcatatctggtttctgtttcagGGTAAAGTGCAGCGTGACTCCTCTTGAATGAGACAGACATCTTAAACCAGTATCTAGACAAGGAAgtaagtacccattgggataagaggggggtgagagagtgttgcccctcgag Alignment from Exonerate_protein2genome GGGGAAGTGCAGCGTGACT-CTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG ggtatgatggactgctcatccaggatttgcatatctggtttctgtttcagGGTAAAGTGCAGCGTGACTCCTCTTGAATGAGACAGACATCTTAAACCAGTATCTAGACAAGGAAgtaagtacccattgggataagaggggggtgagagagtgttgcccctcgag Alignment from Exonerate_coding2genome GGGGAAGTGCAGCGTGACT-CTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG ggtatgatggactgctcatccaggatttgcatatctggtttctgtttcagGGTAAAGTGCAGCGTGACTCCTCTTGAATGAGACAGACATCTTAAACCAGTATCTAGACAAGGAAgtaagtacccattgggataagaggggggtgagagagtgttgcccctcgag Alignment from GeneWise ggtatgatggactgctcatccaggatttgcatatctggtttctgtttcagggtaaagtgcagcgtgactcctcttgaatgagacagacatcttaaaccagtatctagacaaggaagtaagtacccattgggataagaggggggtgagagagtgttgcccctcgag #### Mta2_ID2538_11 --> 0 - 2 Original Alignment AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAA-CTGAAACAGGTCTACATCCCCACTta atattggttgaaatgctttgaatttattcatttctctactatttttccagAAAAGGTTAAAAGCTGCAGAAGCAGACAGCAAACCTGAAACAGGTCTACATCCCCACTtagtggggttggcagcaatgcacaaaatcaggaacacctcatgggccaagga Alignment from CESAR AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAA-CTGAAACAGGTCTACATCCCCACTta atattggttgaaatgctttgaatttattcatttctctactatttttccagAAAAGGTTAAAAGCTGCAGAAGCAGACAGCAAACCTGAAACAGGTCTACATCCCCACTtagtggggttggcagcaatgcacaaaatcaggaacacctcatgggccaagga Alignment from Spaln_aa2Genome AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAA-CTGAAACAGGTCTACATCCCCACTTA atattggttgaaatgctttgaatttattcatttctctactatttttccagAAAAGGTTAAAAGCTGCAGAAGCAGACAGCAAAcCTGAAACAGGTCTACATCCCCACTTAgtggggttggcagcaatgcacaaaatcaggaacacctcatgggccaagga Alignment from Spaln_nt2Genome AAAAGATTGAAAGCTGCTGAAGCAGACAGC-AAACTGAAACAGGTCTACATCCCCACTTA atattggttgaaatgctttgaatttattcatttctctactatttttccagAAAAGGTTAAAAGCTGCAGAAGCAGACAGCAAACCTGAAACAGGTCTACATCCCCACTTAgtggggttggcagcaatgcacaaaatcaggaacacctcatgggccaagga Alignment from Pairagon AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAA-CTGAAACAGGTCTACATCCCCACTTA atattggttgaaatgctttgaatttattcatttctctactatttttccagAAAAGGTTAAAAGCTGCAGAAGCAGACAGCAAACCTGAAACAGGTCTACATCCCCACTTAgtggggttggcagcaatgcacaaaatcaggaacacctcatgggccaagga Alignment from Exonerate_protein2genome AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAA-CTGAAACAGGTCTACATCCCCACTTA atattggttgaaatgctttgaatttattcatttctctactatttttccagAAAAGGTTAAAAGCTGCAGAAGCAGACAGCAAACCTGAAACAGGTCTACATCCCCACTTAgtggggttggcagcaatgcacaaaatcaggaacacctcatgggccaagga Alignment from Exonerate_coding2genome AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAA-CTGAAACAGGTCTACATCCCCACTTA atattggttgaaatgctttgaatttattcatttctctactatttttccagAAAAGGTTAAAAGCTGCAGAAGCAGACAGCAAACCTGAAACAGGTCTACATCCCCACTTAgtggggttggcagcaatgcacaaaatcaggaacacctcatgggccaagga Alignment from GeneWise atattggttgaaatgctttgaatttattcatttctctactatttttccagaaaaggttaaaagctgcagaagcagacagcaaacctgaaacaggtctacatccccacttagtggggttggcagcaatgcacaaaatcaggaacacctcatgggccaagga #### Mta2_ID2539_12 --> 1 - 1 Original Alignment tACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGC-ATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACa ggttgtttcctttacagccatctttctcctttgtggactctcttctgcagtACCAAGCCAAACCCTAATCAGATCATTTCTGTGGGTTCAAAGCCTGGCCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGTCACagtaagttccaagtggggacagggttggtttacatggtcccagttggctta Alignment from CESAR tACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGC-ATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACa ggttgtttcctttacagccatctttctcctttgtggactctcttctgcagtACCAAGCCAAACCCTAATCAGATCATTTCTGTGGGTTCAAAGCCTGGCCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGTCACagtaagttccaagtggggacagggttggtttacatggtcccagttggctta Alignment from Spaln_aa2Genome TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGC-ATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA ggttgtttcctttacagccatctttctcctttgtggactctcttctgcagTACCAAGCCAAACCCTAATCAGATCATTTCTGTGGGTTCAAAGCCTGGCcATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGTCACAgtaagttccaagtggggacagggttggtttacatggtcccagttggctta Alignment from Spaln_nt2Genome TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGG-CATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA ggttgtttcctttacagccatctttctcctttgtggactctcttctgcagTACCAAGCCAAACCCTAATCAGATCATTTCTGTGGGTTCAAAGCCTGGCCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGTCACAgtaagttccaagtggggacagggttggtttacatggtcccagttggctta Alignment from Pairagon TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGG-CATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA ggttgtttcctttacagccatctttctcctttgtggactctcttctgcagTACCAAGCCAAACCCTAATCAGATCATTTCTGTGGGTTCAAAGCCTGGCCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGTCACAgtaagttccaagtggggacagggttggtttacatggtcccagttggctta Alignment from Exonerate_protein2genome TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGC-ATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA ggttgtttcctttacagccatctttctcctttgtggactctcttctgcagTACCAAGCCAAACCCTAATCAGATCATTTCTGTGGGTTCAAAGCCTGGCCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGTCACAgtaagttccaagtggggacagggttggtttacatggtcccagttggctta Alignment from Exonerate_coding2genome TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGC-ATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA ggttgtttcctttacagccatctttctcctttgtggactctcttctgcagTACCAAGCCAAACCCTAATCAGATCATTTCTGTGGGTTCAAAGCCTGGCCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGTCACAgtaagttccaagtggggacagggttggtttacatggtcccagttggctta Alignment from GeneWise TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGC-ATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA ggttgtttcctttacagccatctttctcctttgtggactctcttctgcagTACCAAGCCAAACCCTAATCAGATCATTTCTGTGGGTTCAAAGCCTGGCCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGTCACAgtaagttccaagtggggacagggttggtttacatggtcccagttggctta #### Mta2_ID2540_13 --> 2 - 0 Original Alignment ccACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCT-ACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tgtagcatctttcctgtcagcaaattccctgttctctccttttctaacagccACACAGTCTGCCCAGTGGTATGCCTGGGGACCGCCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGATTTATTGGAAAAAATATGGGGGCCTGAAGACCCCTCACCCAACTAGAAGGAGCAGCTCGGGGCACCACAgtgggtgtcagtgggttggaactcagcatggtaactaaggcaggtgggga Alignment from CESAR ccACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCT-ACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tgtagcatctttcctgtcagcaaattccctgttctctccttttctaacagccACACAGTCTGCCCAGTGGTATGCCTGGGGACCGCCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGATTTATTGGAAAAAATATGGGGGCCTGAAGACCCCTCACCCAACTAGAAGGAGCAGCTCGGGGCACCACAgtgggtgtcagtgggttggaactcagcatggtaactaaggcaggtgggga Alignment from Spaln_aa2Genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCT-ACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tgtagcatctttcctgtcagcaaattccctgttctctccttttctaacagCCACACAGTCTGCCCAGTGGTATGCCTGGGGACCGCCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGATTTATTGGAAAAAATATGGGGGCCTGAAGACCCCTcACCCAACTAGAAGGAGCAGCTCGGGGCACCACAgtgggtgtcagtgggttggaactcagcatggtaactaaggcaggtgggga Alignment from Spaln_nt2Genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCT-ACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tgtagcatctttcctgtcagcaaattccctgttctctccttttctaacagCCACACAGTCTGCCCAGTGGTATGCCTGGGGACCGCCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGATTTATTGGAAAAAATATGGGGGCCTGAAGACCCCTCACCCAACTAGAAGGAGCAGCTCGGGGCACCACAgtgggtgtcagtgggttggaactcagcatggtaactaaggcaggtgggga Alignment from Pairagon CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCT-ACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tgtagcatctttcctgtcagcaaattccctgttctctccttttctaacagCCACACAGTCTGCCCAGTGGTATGCCTGGGGACCGCCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGATTTATTGGAAAAAATATGGGGGCCTGAAGACCCCTCACCCAACTAGAAGGAGCAGCTCGGGGCACCACAgtgggtgtcagtgggttggaactcagcatggtaactaaggcaggtgggga Alignment from Exonerate_protein2genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCT-ACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tgtagcatctttcctgtcagcaaattccctgttctctccttttctaacagCCACACAGTCTGCCCAGTGGTATGCCTGGGGACCGCCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGATTTATTGGAAAAAATATGGGGGCCTGAAGACCCCTCACCCAACTAGAAGGAGCAGCTCGGGGCACCACAgtgggtgtcagtgggttggaactcagcatggtaactaaggcaggtgggga Alignment from Exonerate_coding2genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCT-ACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tgtagcatctttcctgtcagcaaattccctgttctctccttttctaacagCCACACAGTCTGCCCAGTGGTATGCCTGGGGACCGCCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGATTTATTGGAAAAAATATGGGGGCCTGAAGACCCCTCACCCAACTAGAAGGAGCAGCTCGGGGCACCACAgtgggtgtcagtgggttggaactcagcatggtaactaaggcaggtgggga Alignment from GeneWise CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCT-ACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tgtagcatctttcctgtcagcaaattccctgttctctccttttctaacagCCACACAGTCTGCCCAGTGGTATGCCTGGGGACCGCCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGATTTATTGGAAAAAATATGGGGGCCTGAAGACCCCTCACCCAACTAGAAGGAGCAGCTCGGGGCACCACAgtgggtgtcagtgggttggaactcagcatggtaactaaggcaggtgggga #### Mta2_ID2544_17 --> 0 - 2 Original Alignment ATGGCAGGGGCAGGGGTCCCCTTC-TCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCag gggttttatgggtggtagttcctgcattcagttattcccctctgctgcagATGGCAGGAGCAGGGGTCCCCTTCCTCTGCCAATGGGAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCCGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCaggtaagtagggagtctagcatgagaggctgaggtgctggcaatccaggtca Alignment from CESAR ATGGCAGGGGCAGGGGTCCCCTTC-TCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCag gggttttatgggtggtagttcctgcattcagttattcccctctgctgcagATGGCAGGAGCAGGGGTCCCCTTCCTCTGCCAATGGGAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCCGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCaggtaagtagggagtctagcatgagaggctgaggtgctggcaatccaggtca Alignment from Spaln_aa2Genome ATGGCAGGGGCAGGGGTCCCCTTC-TCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG gggttttatgggtggtagttcctgcattcagttattcccctctgctgcagATGGCAGGAGCAGGGGTCCCCTTCcTCTGCCAATGGGAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCCGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAGgtaagtagggagtctagcatgagaggctgaggtgctggcaatccaggtca Alignment from Spaln_nt2Genome GGGTCCCCTTCTCTGCCAA-TGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG gggttttatgggtggtagttcctgcattcagttattcccctctgctgcagatggcaggagcagGGGTCCCCTTCCTCTGCCAATGGGAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCCGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAGgtaagtagggagtctagcatgagaggctgaggtgctggcaatccaggtca Alignment from Pairagon ATGGCAGGGGCAGGGGTCCCCTT-CTCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG gggttttatgggtggtagttcctgcattcagttattcccctctgctgcagATGGCAGGAGCAGGGGTCCCCTTCCTCTGCCAATGGGAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCCGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAGgtaagtagggagtctagcatgagaggctgaggtgctggcaatccaggtca Alignment from Exonerate_protein2genome ATGGCAGGGGCAGGGGTCCCCTTC-TCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG gggttttatgggtggtagttcctgcattcagttattcccctctgctgcagATGGCAGGAGCAGGGGTCCCCTTCCTCTGCCAATGGGAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCCGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAGgtaagtagggagtctagcatgagaggctgaggtgctggcaatccaggtca Alignment from Exonerate_coding2genome ATGGCAGGGGCAGGGGTCCCCTTC-TCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG gggttttatgggtggtagttcctgcattcagttattcccctctgctgcagATGGCAGGAGCAGGGGTCCCCTTCCTCTGCCAATGGGAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCCGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAGgtaagtagggagtctagcatgagaggctgaggtgctggcaatccaggtca Alignment from GeneWise ATGGCAGGGGCAGGGGTCCCCTTC-TCTGCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG gggttttatgggtggtagttcctgcattcagttattcccctctgctgcagATGGCAGGAGCAGGGGTCCCCTTCCTCTGCCAATGGGAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCCGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAGgtaagtagggagtctagcatgagaggctgaggtgctggcaatccaggtca #### Myrf_ID2714_23 --> 1 - 2 Original Alignment gCTTGGCAACTTCACCTACCACATCCCTGTCAGCAGC-AGCACACCACTGCACCTCAGCCTGACCCTGCAGATGaa ggagaaactggcaaagtggcctttattaaaaactccatctgcgtctccagaCTTGGCAACTTCACATACCACATCCCAGTCAGCAGCCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGaagtaggggttggtgtgtgaccacatgtgggggaccgtgcgaatacaaagtg Alignment from CESAR gCTTGGCAACTTCACCTACCACATCCCTGTCAGCAGC-AGCACACCACTGCACCTCAGCCTGACCCTGCAGATGaa ggagaaactggcaaagtggcctttattaaaaactccatctgcgtctccagaCTTGGCAACTTCACATACCACATCCCAGTCAGCAGCCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGaagtaggggttggtgtgtgaccacatgtgggggaccgtgcgaatacaaagtg Alignment from Spaln_aa2Genome GCTTGGCAACTTCACCTACCACATCCCTGTCAGCAGC-AGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA ggagaaactggcaaagtggcctttattaaaaactccatctgcgtctccagACTTGGCAACTTCACATACCACATCCCAGTCAGCAGCcAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAAgtaggggttggtgtgtgaccacatgtgggggaccgtgcgaatacaaagtg Alignment from Spaln_nt2Genome GCTTGGCAACTTCACCTACCACATCCCTGTCAGCAGC-AGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA ggagaaactggcaaagtggcctttattaaaaactccatctgcgtctccagACTTGGCAACTTCACATACCACATCCCAGTCAGCAGCCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAAgtaggggttggtgtgtgaccacatgtgggggaccgtgcgaatacaaagtg Alignment from Pairagon GCTTGGCAACTTCACCTACCACATCCCTGTCAGCAG-CAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA ggagaaactggcaaagtggcctttattaaaaactccatctgcgtctccagACTTGGCAACTTCACATACCACATCCCAGTCAGCAGCCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAAgtaggggttggtgtgtgaccacatgtgggggaccgtgcgaatacaaagtg Alignment from Exonerate_protein2genome GCTTGGCAACTTCACCTACCACATCCCTGTCAGCAGC-AGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA ggagaaactggcaaagtggcctttattaaaaactccatctgcgtctccagACTTGGCAACTTCACATACCACATCCCAGTCAGCAGCCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAAgtaggggttggtgtgtgaccacatgtgggggaccgtgcgaatacaaagtg Alignment from Exonerate_coding2genome GCTTGGCAACTTCACCTACCACATCCCTGTCAGCAGC-AGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA ggagaaactggcaaagtggcctttattaaaaactccatctgcgtctccagACTTGGCAACTTCACATACCACATCCCAGTCAGCAGCCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAAgtaggggttggtgtgtgaccacatgtgggggaccgtgcgaatacaaagtg Alignment from GeneWise GCTTGGCAACTTCACCTACCACATCCCTGTCAGCAGC-AGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA ggagaaactggcaaagtggcctttattaaaaactccatctgcgtctccagACTTGGCAACTTCACATACCACATCCCAGTCAGCAGCCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAAgtaggggttggtgtgtgaccacatgtgggggaccgtgcgaatacaaagtg #### Myrf_ID2718_19 --> 1 - 1 Original Alignment cAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCGACAGTCCTCC-ATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGg ccagctccaaagcttccctgtgcctctatcttaaacatttccattttcagtAGGTCCAGTCAGAGCTTTGGGACCACACAGCTCCAACAGTCCTCCCATGACCACTGGACTACCAGGCACACAGCCCTCTTTGCTGCTGggtaagtgtctggtgggataggatggggctgatggatgtgtgtgcagcccc Alignment from CESAR cAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCGACAGTCCTCC-ATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGg ccagctccaaagcttccctgtgcctctatcttaaacatttccattttcagtAGGTCCAGTCAGAGCTTTGGGACCACACAGCTCCAACAGTCCTCCCATGACCACTGGACTACCAGGCACACAGCCCTCTTTGCTGCTGggtaagtgtctggtgggataggatggggctgatggatgtgtgtgcagcccc Alignment from Spaln_aa2Genome CAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCGACAGTCCTCC-ATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGG ccagctccaaagcttccctgtgcctctatcttaaacatttccattttcagTAGGTCCAGTCAGAGCTTTGGGACCACACAGCTCCAACAGTCCTCCcATGACCACTGGACTACCAGGCACACAGCCCTCTTTGCTGCTGGgtaagtgtctggtgggataggatggggctgatggatgtgtgtgcagcccc Alignment from Spaln_nt2Genome CAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCGACAGTCCTCC-ATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGG ccagctccaaagcttccctgtgcctctatcttaaacatttccattttcagTAGGTCCAGTCAGAGCTTTGGGACCACACAGCTCCAACAGTCCTCCCATGACCACTGGACTACCAGGCACACAGCCCTCTTTGCTGCTGGgtaagtgtctggtgggataggatggggctgatggatgtgtgtgcagcccc Alignment from Pairagon CAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCGACAGTCCT-CCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGG ccagctccaaagcttccctgtgcctctatcttaaacatttccattttcagTAGGTCCAGTCAGAGCTTTGGGACCACACAGCTCCAACAGTCCTCCCATGACCACTGGACTACCAGGCACACAGCCCTCTTTGCTGCTGGgtaagtgtctggtgggataggatggggctgatggatgtgtgtgcagcccc Alignment from Exonerate_protein2genome CAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCGACAGTCCTCC-ATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGG ccagctccaaagcttccctgtgcctctatcttaaacatttccattttcagTAGGTCCAGTCAGAGCTTTGGGACCACACAGCTCCAACAGTCCTCCCATGACCACTGGACTACCAGGCACACAGCCCTCTTTGCTGCTGGgtaagtgtctggtgggataggatggggctgatggatgtgtgtgcagcccc Alignment from Exonerate_coding2genome CAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCGACAGTCCTCC-ATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGG ccagctccaaagcttccctgtgcctctatcttaaacatttccattttcagTAGGTCCAGTCAGAGCTTTGGGACCACACAGCTCCAACAGTCCTCCCATGACCACTGGACTACCAGGCACACAGCCCTCTTTGCTGCTGGgtaagtgtctggtgggataggatggggctgatggatgtgtgtgcagcccc Alignment from GeneWise CAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCGACAGTCC-TCCATGACCACCGGACTACCAGGCACACAGCCCTCTTTGCTGCTGG ccagctccaaagcttccctgtgcctctatcttaaacatttccattttcagTAGGTCCAGTCAGAGCTTTGGGACCACACAGCTCCAACAGTCCTCCCATGACCACTGGACTACCAGGCACACAGCCCTCTTTGCTGCTGGgtaagtgtctggtgggataggatggggctgatggatgtgtgtgcagcccc #### Myrf_ID2719_18 --> 1 - 2 Original Alignment cGTGGTGTCTATGTCCACACTATATGTGCTGAGCCTGCGCTCT-GAAGAGGACCTGGTGGATGCTGATgg ggcttgcaatcagacagtgattcacagtaatgtgtcatttgtctttgtagtGTGGTGTCCATGTCAACACTATTTGTTTTGAGTCTGCGCTCTCGAAGAGGACCTGGTGGATGCTGATgggtaagtccatggagatgacattattgttaaacccctcggcccagtgggtg Alignment from CESAR cGTGGTGTCTATGTCCACACTATATGTGCTGAGCCTGCGCTCT-GAAGAGGACCTGGTGGATGCTGATgg ggcttgcaatcagacagtgattcacagtaatgtgtcatttgtctttgtagtGTGGTGTCCATGTCAACACTATTTGTTTTGAGTCTGCGCTCTCGAAGAGGACCTGGTGGATGCTGATgggtaagtccatggagatgacattattgttaaacccctcggcccagtgggtg Alignment from Spaln_aa2Genome CGTGGTGTCTATGTCCACACTATATGTGCTGAGCCTGCGCTCT-GAAGAGGACCTGGTGGATGCTGATGG ggcttgcaatcagacagtgattcacagtaatgtgtcatttgtctttgtagTGTGGTGTCCATGTCAACACTATTTGTTTTGAGTCTGCGCTCTcGAAGAGGACCTGGTGGATGCTGATGGgtaagtccatggagatgacattattgttaaacccctcggcccagtgggtg Alignment from Spaln_nt2Genome CGTGGTGTCTATGTCCACACTATATGTGCTGAGCCTGCGCTCT-GAAGAGGACCTGGTGGATGCTGATGG ggcttgcaatcagacagtgattcacagtaatgtgtcatttgtctttgtagTGTGGTGTCCATGTCAACACTATTTGTTTTGAGTCTGCGCTCTCGAAGAGGACCTGGTGGATGCTGATGGgtaagtccatggagatgacattattgttaaacccctcggcccagtgggtg Alignment from Pairagon CGTGGTGTCTATGTCCACACTATATGTGCTGAGCCTGCGCTCT-GAAGAGGACCTGGTGGATGCTGATGG ggcttgcaatcagacagtgattcacagtaatgtgtcatttgtctttgtagTGTGGTGTCCATGTCAACACTATTTGTTTTGAGTCTGCGCTCTCGAAGAGGACCTGGTGGATGCTGATGGgtaagtccatggagatgacattattgttaaacccctcggcccagtgggtg Alignment from Exonerate_protein2genome CGTGGTGTCTATGTCCACACTATATGTGCTGAGCCTGCGCTCT-GAAGAGGACCTGGTGGATGCTGATGG ggcttgcaatcagacagtgattcacagtaatgtgtcatttgtctttgtagTGTGGTGTCCATGTCAACACTATTTGTTTTGAGTCTGCGCTCTCGAAGAGGACCTGGTGGATGCTGATGGgtaagtccatggagatgacattattgttaaacccctcggcccagtgggtg Alignment from Exonerate_coding2genome CGTGGTGTCTATGTCCACACTATATGTGCTGAGCCTGCGCTCT-GAAGAGGACCTGGTGGATGCTGATGG ggcttgcaatcagacagtgattcacagtaatgtgtcatttgtctttgtagTGTGGTGTCCATGTCAACACTATTTGTTTTGAGTCTGCGCTCTCGAAGAGGACCTGGTGGATGCTGATGGgtaagtccatggagatgacattattgttaaacccctcggcccagtgggtg Alignment from GeneWise CGTGGTGTCTATGTCCACACTATATGTGCTGAGCCTGCGC-TCTGAAGAGGACCTGGTGGATGCTGATGG ggcttgcaatcagacagtgattcacagtaatgtgtcatttgtctttgtagTGTGGTGTCCATGTCAACACTATTTGTTTTGAGTCTGCGCTCTCGAAGAGGACCTGGTGGATGCTGATGGgtaagtccatggagatgacattattgttaaacccctcggcccagtgggtg #### Myrf_ID2720_17 --> 0 - 2 Original Alignment TCATCGCCAGCGGTC-CCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCag cctaactctaccatcttctgctgtgttctgactccgtcttcctcctgcagTCATCGTCAGCAGTCCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATTGCTCTAGTGGTGGTCATGGCCTTCaggtgagtccctttcaggtactggggaggcttctttaaaaagcagagccaca Alignment from CESAR TCATCGCCAGCGGTC-CCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCag cctaactctaccatcttctgctgtgttctgactccgtcttcctcctgcagTCATCGTCAGCAGTCCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATTGCTCTAGTGGTGGTCATGGCCTTCaggtgagtccctttcaggtactggggaggcttctttaaaaagcagagccaca Alignment from Spaln_aa2Genome -TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactctaccatcttctgctgtgttctgactccgtcttcctcctgcagTCATCGTCAGCAGTCCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATTGCTCTAGTGGTGGTCATGGCCTTCAGgtgagtccctttcaggtactggggaggcttctttaaaaagcagagccaca Alignment from Spaln_nt2Genome TCATCGCCAGCGGTCCC-AGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactctaccatcttctgctgtgttctgactccgtcttcctcctgcagTCATCGTCAGCAGTCCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATTGCTCTAGTGGTGGTCATGGCCTTCAGgtgagtccctttcaggtactggggaggcttctttaaaaagcagagccaca Alignment from Pairagon TCATCGCCAGCGGT-CCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactctaccatcttctgctgtgttctgactccgtcttcctcctgcagTCATCGTCAGCAGTCCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATTGCTCTAGTGGTGGTCATGGCCTTCAGgtgagtccctttcaggtactggggaggcttctttaaaaagcagagccaca Alignment from Exonerate_protein2genome TCATCGCCAGCGGTC-CCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactctaccatcttctgctgtgttctgactccgtcttcctcctgcagTCATCGTCAGCAGTCCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATTGCTCTAGTGGTGGTCATGGCCTTCAGgtgagtccctttcaggtactggggaggcttctttaaaaagcagagccaca Alignment from Exonerate_coding2genome TCATCGCCAGCGGTC-CCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactctaccatcttctgctgtgttctgactccgtcttcctcctgcagTCATCGTCAGCAGTCCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATTGCTCTAGTGGTGGTCATGGCCTTCAGgtgagtccctttcaggtactggggaggcttctttaaaaagcagagccaca Alignment from GeneWise TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactctaccatcttctgctgtgttctgactccgtcttcctcctgcagtcatcgtcagCAGTCC---------CCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGGGAACTATCATTGCTCTAGTGGTGGTCATGGCCTTCAGgtgagtccctttcaggtactggggaggcttctttaaaaagcagagccaca #### Myrf_ID2724_13 --> 0 - 1 Original Alignment GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCC-ACCGCACCGGAGACAg gtgattacaggaggatgggagggttcaggtaatactgttcattgtttcagGTGGACACCACTGAACACCTAAAGAGGATCTCGCGGATGCGGTTAGTGCACTACAGGTACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCCACTGCACCAGAGACAggtaagtatgccctgtgttccttggaggtgccagtctgtcctgtgtcacct Alignment from CESAR GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCC-ACCGCACCGGAGACAg gtgattacaggaggatgggagggttcaggtaatactgttcattgtttcagGTGGACACCACTGAACACCTAAAGAGGATCTCGCGGATGCGGTTAGTGCACTACAGGTACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCCACTGCACCAGAGACAggtaagtatgccctgtgttccttggaggtgccagtctgtcctgtgtcacct Alignment from Spaln_aa2Genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCC-ACCGCACCGGAGACAG gtgattacaggaggatgggagggttcaggtaatactgttcattgtttcagGTGGACACCACTGAACACCTAAAGAGGATCTCGCGGATGCGGTTAGTGCACTACAGGTACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCcACTGCACCAGAGACAGgtaagtatgccctgtgttccttggaggtgccagtctgtcctgtgtcacct Alignment from Spaln_nt2Genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCC-ACCGCACCGGAGACAG gtgattacaggaggatgggagggttcaggtaatactgttcattgtttcagGTGGACACCACTGAACACCTAAAGAGGATCTCGCGGATGCGGTTAGTGCACTACAGGTACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCCACTGCACCAGAGACAGgtaagtatgccctgtgttccttggaggtgccagtctgtcctgtgtcacct Alignment from Pairagon GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAG-CCACCGCACCGGAGACAG gtgattacaggaggatgggagggttcaggtaatactgttcattgtttcagGTGGACACCACTGAACACCTAAAGAGGATCTCGCGGATGCGGTTAGTGCACTACAGGTACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCCACTGCACCAGAGACAGgtaagtatgccctgtgttccttggaggtgccagtctgtcctgtgtcacct Alignment from Exonerate_protein2genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCC-ACCGCACCGGAGACAG gtgattacaggaggatgggagggttcaggtaatactgttcattgtttcagGTGGACACCACTGAACACCTAAAGAGGATCTCGCGGATGCGGTTAGTGCACTACAGGTACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCCACTGCACCAGAGACAGgtaagtatgccctgtgttccttggaggtgccagtctgtcctgtgtcacct Alignment from Exonerate_coding2genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCC-ACCGCACCGGAGACAG gtgattacaggaggatgggagggttcaggtaatactgttcattgtttcagGTGGACACCACTGAACACCTAAAGAGGATCTCGCGGATGCGGTTAGTGCACTACAGGTACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCCACTGCACCAGAGACAGgtaagtatgccctgtgttccttggaggtgccagtctgtcctgtgtcacct Alignment from GeneWise GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAA-GCCACCGCACCGGAGACAG gtgattacaggaggatgggagggttcaggtaatactgttcattgtttcagGTGGACACCACTGAACACCTAAAGAGGATCTCGCGGATGCGGTTAGTGCACTACAGGTACAAGCCTGAGTTTGCTGCTAGTGCAGGCATTGAAGCCCACTGCACCAGAGACAGgtaagtatgccctgtgttccttggaggtgccagtctgtcctgtgtcacct #### Myrf_ID2725_12 --> 0 - 0 Original Alignment GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGC-ATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG gccttaaagtttaccctgcccccaagtgattggctattgtcttttcgcagGCCTCTAACCCAGGACAGTTT---AGTGATAGTGATGTACTGTGGCAACGGGCACAACTGCCAGATACAGTCTTTCATCCTGGCCGTGTGGGCCATCAACACCGACCCGCCAGATGAAGCATTGGTTGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCCTTCTGATCTGCGGGCTAAGGAGCATGTGCAGGAGgtaagcagagtggcagggctgtgggtgatgaatccaaggacccctggaaa Alignment from CESAR GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGC-ATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG gccttaaagtttaccctgcccccaagtgattggctattgtcttttcgcagGCCTCTAACCCAGGACAGTTT---AGTGATAGTGATGTACTGTGGCAACGGGCACAACTGCCAGATACAGTCTTTCATCCTGGCCGTGTGGGCCATCAACACCGACCCGCCAGATGAAGCATTGGTTGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCCTTCTGATCTGCGGGCTAAGGAGCATGTGCAGGAGgtaagcagagtggcagggctgtgggtgatgaatccaaggacccctggaaa Alignment from Spaln_aa2Genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGC-ATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG gccttaaagtttaccctgcccccaagtgattggctattgtcttttcgcagGCCTCTAACCCAGGACAGTTT---AGTGATAGTGATGTACTGTGGCAACGGGCACAACTGCCAGATACAGTCTTTCATCCTGGCCGTGTGGGCcATCAACACCGACCCGCCAGATGAAGCATTGGTTGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCCTTCTGATCTGCGGGCTAAGGAGCATGTGCAGGAGgtaagcagagtggcagggctgtgggtgatgaatccaaggacccctggaaa Alignment from Spaln_nt2Genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGC-ATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG gccttaaagtttaccctgcccccaagtgattggctattgtcttttcgcagGCCTCTAACCCAGGACAGTTT---AGTGATAGTGATGTACTGTGGCAACGGGCACAACTGCCAGATACAGTCTTTCATCCTGGCCGTGTGGGCCATCAACACCGACCCGCCAGATGAAGCATTGGTTGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCCTTCTGATCTGCGGGCTAAGGAGCATGTGCAGGAGgtaagcagagtggcagggctgtgggtgatgaatccaaggacccctggaaa Alignment from Pairagon GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGG-CATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG gccttaaagtttaccctgcccccaagtgattggctattgtcttttcgcagGCCTCTAACCCAGGACAGTTT---AGTGATAGTGATGTACTGTGGCAACGGGCACAACTGCCAGATACAGTCTTTCATCCTGGCCGTGTGGGCCATCAACACCGACCCGCCAGATGAAGCATTGGTTGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCCTTCTGATCTGCGGGCTAAGGAGCATGTGCAGGAGgtaagcagagtggcagggctgtgggtgatgaatccaaggacccctggaaa Alignment from Exonerate_protein2genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGC-ATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG gccttaaagtttaccctgcccccaagtgattggctattgtcttttcgcagGCCTCTAACCCAGGACAGTTT---AGTGATAGTGATGTACTGTGGCAACGGGCACAACTGCCAGATACAGTCTTTCATCCTGGCCGTGTGGGCCATCAACACCGACCCGCCAGATGAAGCATTGGTTGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCCTTCTGATCTGCGGGCTAAGGAGCATGTGCAGGAGgtaagcagagtggcagggctgtgggtgatgaatccaaggacccctggaaa Alignment from Exonerate_coding2genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGC-ATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG gccttaaagtttaccctgcccccaagtgattggctattgtcttttcgcagGCCTCTAACCCAGGACAGTTT---AGTGATAGTGATGTACTGTGGCAACGGGCACAACTGCCAGATACAGTCTTTCATCCTGGCCGTGTGGGCCATCAACACCGACCCGCCAGATGAAGCATTGGTTGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCCTTCTGATCTGCGGGCTAAGGAGCATGTGCAGGAGgtaagcagagtggcagggctgtgggtgatgaatccaaggacccctggaaa Alignment from GeneWise GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGC-ATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG gccttaaagtttaccctgcccccaagtgattggctattgtcttttcgcagGCCTCTAACCCAGGACAGTTT---AGTGATAGTGATGTACTGTGGCAACGGGCACAACTGCCAGATACAGTCTTTCATCCTGGCCGTGTGGGCCATCAACACCGACCCGCCAGATGAAGCATTGGTTGTCCATGGCAATGTGAAGGTCATGGGTTCCCTTATGCACCCTTCTGATCTGCGGGCTAAGGAGCATGTGCAGGAGgtaagcagagtggcagggctgtgggtgatgaatccaaggacccctggaaa #### Myrf_ID2727_10 --> 1 - 2 Original Alignment gGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCAT-TTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGag tgttggatggttcctggaaagcacagcttctgacttgtgcttcctcccaggGTCAATCTTCCCCCTGAGCAGGTTACAAAAGTGACTGTGGGGCGGCTCCATCTTCACTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGaggtggtgaggctgacctggccccaggacccctctcaccccctttccgatga Alignment from CESAR gGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCAT-TTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGag tgttggatggttcctggaaagcacagcttctgacttgtgcttcctcccaggGTCAATCTTCCCCCTGAGCAGGTTACAAAAGTGACTGTGGGGCGGCTCCATCTTCACTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGaggtggtgaggctgacctggccccaggacccctctcaccccctttccgatga Alignment from Spaln_aa2Genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCAT-TTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tgttggatggttcctggaaagcacagcttctgacttgtgcttcctcccagGGTCAATCTTCCCCCTGAGCAGGTTACAAAAGTGACTGTGGGGCGGCTCCATcTTCACTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAGgtggtgaggctgacctggccccaggacccctctcaccccctttccgatga Alignment from Spaln_nt2Genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCAT-TTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tgttggatggttcctggaaagcacagcttctgacttgtgcttcctcccagGGTCAATCTTCCCCCTGAGCAGGTTACAAAAGTGACTGTGGGGCGGCTCCATCTTCACTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAGgtggtgaggctgacctggccccaggacccctctcaccccctttccgatga Alignment from Pairagon GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCAT-TTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tgttggatggttcctggaaagcacagcttctgacttgtgcttcctcccagGGTCAATCTTCCCCCTGAGCAGGTTACAAAAGTGACTGTGGGGCGGCTCCATCTTCACTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAGgtggtgaggctgacctggccccaggacccctctcaccccctttccgatga Alignment from Exonerate_protein2genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCAT-TTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tgttggatggttcctggaaagcacagcttctgacttgtgcttcctcccagGGTCAATCTTCCCCCTGAGCAGGTTACAAAAGTGACTGTGGGGCGGCTCCATCTTCACTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAGgtggtgaggctgacctggccccaggacccctctcaccccctttccgatga Alignment from Exonerate_coding2genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCAT-TTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tgttggatggttcctggaaagcacagcttctgacttgtgcttcctcccagGGTCAATCTTCCCCCTGAGCAGGTTACAAAAGTGACTGTGGGGCGGCTCCATCTTCACTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAGgtggtgaggctgacctggccccaggacccctctcaccccctttccgatga Alignment from GeneWise GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCAT-TTCAGTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAGG-- tgttggatggttcctggaaagcacagcttctgacttgtgcttcctcccagGGTCAATCTTCCCCCTGAGCAGGTTACAAAAGTGACTGTGGGGCGGCTCCATCTTCACTGAGACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAGGTGgtgaggctgacctggccccaggacccctctcaccccctttccgatga #### Naa40_ID2074_6 --> 1 - 2 Original Alignment cTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGG-AAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACag caggctcctttattgggtctaagcactcgatcccggccctgctctcccagcTATGAAGTACAGCTGGAAAGCAAGGTACGGCGGCAAAGGCCTAGGGAAGTTTCTCATTCAGATCCTCCAGCTCATGGCCAACaggtacagagcttttacactaccgggggaaagaacttgctgaggaggtgggt Alignment from CESAR cTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGG-AAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACag caggctcctttattgggtctaagcactcgatcccggccctgctctcccagcTATGAAGTACAGCTGGAAAGCAAGGTACGGCGGCAAAGGCCTAGGGAAGTTTCTCATTCAGATCCTCCAGCTCATGGCCAACaggtacagagcttttacactaccgggggaaagaacttgctgaggaggtgggt Alignment from Spaln_aa2Genome CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGG-AAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG caggctcctttattgggtctaagcactcgatcccggccctgctctcccagCTATGAAGTACAGCTGGAAAGCAAGGTACGGCGGcAAAGGCCTAGGGAAGTTTCTCATTCAGATCCTCCAGCTCATGGCCAACAGgtacagagcttttacactaccgggggaaagaacttgctgaggaggtgggt Alignment from Spaln_nt2Genome CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGG-AAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG caggctcctttattgggtctaagcactcgatcccggccctgctctcccagCTATGAAGTACAGCTGGAAAGCAAGGTACGGCGGCAAAGGCCTAGGGAAGTTTCTCATTCAGATCCTCCAGCTCATGGCCAACAGgtacagagcttttacactaccgggggaaagaacttgctgaggaggtgggt Alignment from Pairagon CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGG-AAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG caggctcctttattgggtctaagcactcgatcccggccctgctctcccagCTATGAAGTACAGCTGGAAAGCAAGGTACGGCGGCAAAGGCCTAGGGAAGTTTCTCATTCAGATCCTCCAGCTCATGGCCAACAGgtacagagcttttacactaccgggggaaagaacttgctgaggaggtgggt Alignment from Exonerate_protein2genome CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGG-AAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG caggctcctttattgggtctaagcactcgatcccggccctgctctcccagCTATGAAGTACAGCTGGAAAGCAAGGTACGGCGGCAAAGGCCTAGGGAAGTTTCTCATTCAGATCCTCCAGCTCATGGCCAACAGgtacagagcttttacactaccgggggaaagaacttgctgaggaggtgggt Alignment from Exonerate_coding2genome CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGG-AAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG caggctcctttattgggtctaagcactcgatcccggccctgctctcccagCTATGAAGTACAGCTGGAAAGCAAGGTACGGCGGCAAAGGCCTAGGGAAGTTTCTCATTCAGATCCTCCAGCTCATGGCCAACAGgtacagagcttttacactaccgggggaaagaacttgctgaggaggtgggt Alignment from GeneWise CTATGAAGTGCAGCTGGAAAGCAAGGTACGGCGG-AAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG caggctcctttattgggtctaagcactcgatcccggccctgctctcccagCTATGAAGTACAGCTGGAAAGCAAGGTACGGCGGCAAAGGCCTAGGGAAGTTTCTCATTCAGATCCTCCAGCTCATGGCCAACAGgtacagagcttttacactaccgggggaaagaacttgctgaggaggtgggt #### Naaladl1_ID1443_2 --> 1 - 1 Original Alignment aGAACTCTCCAAGGAACCACACGTGGCC-ACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCg agtcagaggcttccactaatagattttataccagactcctccctcctcagaGAACTCTCGAAGGAACCACATGTGGCCCACCAGCCCTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGCCTAACAGTGTGGAAGTTggtgagctcaagtccaggaatgtcagggggggaaggctgtctttggttaat Alignment from CESAR aGAACTCTCCAAGGAACCACACGTGGCC-ACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCg agtcagaggcttccactaatagattttataccagactcctccctcctcagaGAACTCTCGAAGGAACCACATGTGGCCCACCAGCCCTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGCCTAACAGTGTGGAAGTTggtgagctcaagtccaggaatgtcagggggggaaggttttctctttcatgt Alignment from Spaln_aa2Genome AGAACTCTCCAAGGAACCACACGTGGCC-ACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG agtcagaggcttccactaatagattttataccagactcctccctcctcagAGAACTCTCGAAGGAACCACATGTGGCCcACCAGCCCTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGCCTAACAGTGTGGAAGTTGgtgagctcaagtccaggaatgtcagggggggaaggctgtctttggttaat Alignment from Spaln_nt2Genome AGAACTCTCCAAGGAACCACACGTGGCC-ACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG agtcagaggcttccactaatagattttataccagactcctccctcctcagAGAACTCTCGAAGGAACCACATGTGGCCCACCAGCCCTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGCCTAACAGTGTGGAAGTTGgtgagctcaagtccaggaatgtcagggggggaaggctgtctttggttaat Alignment from Pairagon AGAACTCTCCAAGGAACCACACGTGG-CCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG agtcagaggcttccactaatagattttataccagactcctccctcctcagAGAACTCTCGAAGGAACCACATGTGGCCCACCAGCCCTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGCCTAACAGTGTGGAAGTTGgtgagctcaagtccaggaatgtcagggggggaaggctgtctttggttaat Alignment from Exonerate_protein2genome AGAACTCTCCAAGGAACCACACGTGGCC-ACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG agtcagaggcttccactaatagattttataccagactcctccctcctcagAGAACTCTCGAAGGAACCACATGTGGCCCACCAGCCCTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGCCTAACAGTGTGGAAGTTGgtgagctcaagtccaggaatgtcagggggggaaggctgtctttggttaat Alignment from Exonerate_coding2genome AGAACTCTCCAAGGAACCACACGTGGCC-ACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG agtcagaggcttccactaatagattttataccagactcctccctcctcagAGAACTCTCGAAGGAACCACATGTGGCCCACCAGCCCTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGCCTAACAGTGTGGAAGTTGgtgagctcaagtccaggaatgtcagggggggaaggctgtctttggttaat Alignment from GeneWise AGAACTCTCCAAGGAACCACACGTG-GCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTC--------------------------------------------------- agtcagaggcttccactaatagattttataccagactcctccctcctcagAGAACTCTCGAAGGAACCACATGTGGCCCACCAGCCCTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCTTTCCCCAATGCAGAGCAGCCTAACAGTGTGGAAGTTGGTGAGCTCAAGTCCAGGAATGTCAGGGGGGGAAGGCTGTCTTTGGTTAAT #### Naaladl1_ID1447_6 --> 1 - 2 Original Alignment tAACCTCACCGGAACCTCTGCCCCTGCCTTC-TGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGag ggacaattgcaggtaccgaaaccgcccttgcagcctctcattccctgcagtAACCTCACGGGAACCTCTGCCCCTGCTTTCCTGGCAGGGGGCCCTAGGCTGTGAGTACAAGCTAGGACCTGGATTTGAGCCGAATGGAAGCTTCCCTGCTGGGaggtgggtcaggacatcttttaccattcctttcccctcttgttgatttgtct Alignment from CESAR tAACCTCACCGGAACCTCTGCCCCTGCCTTC-TGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGag ggacaattgcaggtaccgaaaccgcccttgcagcctctcattccctgcagtAACCTCACGGGAACCTCTGCCCCTGCTTTCCTGGCAGGGGGCCCTAGGCTGTGAGTACAAGCTAGGACCTGGATTTGAGCCGAATGGAAGCTTCCCTGCTGGGaggtgggtcaggacatcttttaccattcctttcccctcttgttgatttgtct Alignment from Spaln_aa2Genome TAACCTCACCGGAACCTCTGCCCCTGCCTTC-TGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG ggacaattgcaggtaccgaaaccgcccttgcagcctctcattccctgcagTAACCTCACGGGAACCTCTGCCCCTGCTTTCcTGGCAGGGGGCCCTAGGCTGTGAGTACAAGCTAGGACCTGGATTTGAGCCGAATGGAAGCTTCCCTGCTGGGAGgtgggtcaggacatcttttaccattcctttcccctcttgttgatttgtct Alignment from Spaln_nt2Genome TAACCTCACCGGAACCTCTGCCCCTGCCTTC-TGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG ggacaattgcaggtaccgaaaccgcccttgcagcctctcattccctgcagTAACCTCACGGGAACCTCTGCCCCTGCTTTCCTGGCAGGGGGCCCTAGGCTGTGAGTACAAGCTAGGACCTGGATTTGAGCCGAATGGAAGCTTCCCTGCTGGGAGgtgggtcaggacatcttttaccattcctttcccctcttgttgatttgtct Alignment from Pairagon TAACCTCACCGGAACCTCTGCCCCTGCCTT-CTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG ggacaattgcaggtaccgaaaccgcccttgcagcctctcattccctgcagTAACCTCACGGGAACCTCTGCCCCTGCTTTCCTGGCAGGGGGCCCTAGGCTGTGAGTACAAGCTAGGACCTGGATTTGAGCCGAATGGAAGCTTCCCTGCTGGGAGgtgggtcaggacatcttttaccattcctttcccctcttgttgatttgtct Alignment from Exonerate_protein2genome TAACCTCACCGGAACCTCTGCCCCTGCCTTC-TGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG ggacaattgcaggtaccgaaaccgcccttgcagcctctcattccctgcagTAACCTCACGGGAACCTCTGCCCCTGCTTTCCTGGCAGGGGGCCCTAGGCTGTGAGTACAAGCTAGGACCTGGATTTGAGCCGAATGGAAGCTTCCCTGCTGGGAGgtgggtcaggacatcttttaccattcctttcccctcttgttgatttgtct Alignment from Exonerate_coding2genome TAACCTCACCGGAACCTCTGCCCCTGCCTTC-TGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG ggacaattgcaggtaccgaaaccgcccttgcagcctctcattccctgcagTAACCTCACGGGAACCTCTGCCCCTGCTTTCCTGGCAGGGGGCCCTAGGCTGTGAGTACAAGCTAGGACCTGGATTTGAGCCGAATGGAAGCTTCCCTGCTGGGAGgtgggtcaggacatcttttaccattcctttcccctcttgttgatttgtct Alignment from GeneWise TAACCTCACCGGAACCTCTGCCCCTGCC-TTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG ggacaattgcaggtaccgaaaccgcccttgcagcctctcattccctgcagTAACCTCACGGGAACCTCTGCCCCTGCTTTCCTGGCAGGGGGCCCTAGGCTGTGAGTACAAGCTAGGACCTGGATTTGAGCCGAATGGAAGCTTCCCTGCTGGGAGgtgggtcaggacatcttttaccattcctttcccctcttgttgatttgtct #### Naaladl1_ID1448_7 --> 1 - 1 Original Alignment tGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATC-ATCCAGGGGGCTGTGGAGCCTg gaagactggagagtgcttactttcaattgcccagcatgtctgccactcagtGAGGTAAAAGTGAGTGTCCACAACAGATTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCCATCCAGGGGGCTGTGGAGCCTggtacgtccgttcacactctaccccaccattctgaaggttttcctgggtcc Alignment from CESAR tGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATC-ATCCAGGGGGCTGTGGAGCCTg gaagactggagagtgcttactttcaattgcccagcatgtctgccactcagtGAGGTAAAAGTGAGTGTCCACAACAGATTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCCATCCAGGGGGCTGTGGAGCCTggtacgtccgttcacactctaccccaccattctgaaggttttcctgggtcc Alignment from Spaln_aa2Genome TGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATC-ATCCAGGGGGCTGTGGAGCCTG gaagactggagagtgcttactttcaattgcccagcatgtctgccactcagTGAGGTAAAAGTGAGTGTCCACAACAGATTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCcATCCAGGGGGCTGTGGAGCCTGgtacgtccgttcacactctaccccaccattctgaaggttttcctgggtcc Alignment from Spaln_nt2Genome TGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCAT-CATCCAGGGGGCTGTGGAGCCTG gaagactggagagtgcttactttcaattgcccagcatgtctgccactcagTGAGGTAAAAGTGAGTGTCCACAACAGATTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCCATCCAGGGGGCTGTGGAGCCTGgtacgtccgttcacactctaccccaccattctgaaggttttcctgggtcc Alignment from Pairagon TGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCAT-CATCCAGGGGGCTGTGGAGCCTG gaagactggagagtgcttactttcaattgcccagcatgtctgccactcagTGAGGTAAAAGTGAGTGTCCACAACAGATTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCCATCCAGGGGGCTGTGGAGCCTGgtacgtccgttcacactctaccccaccattctgaaggttttcctgggtcc Alignment from Exonerate_protein2genome TGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATC-ATCCAGGGGGCTGTGGAGCCTG gaagactggagagtgcttactttcaattgcccagcatgtctgccactcagTGAGGTAAAAGTGAGTGTCCACAACAGATTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCCATCCAGGGGGCTGTGGAGCCTGgtacgtccgttcacactctaccccaccattctgaaggttttcctgggtcc Alignment from Exonerate_coding2genome TGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATC-ATCCAGGGGGCTGTGGAGCCTG gaagactggagagtgcttactttcaattgcccagcatgtctgccactcagTGAGGTAAAAGTGAGTGTCCACAACAGATTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCCATCCAGGGGGCTGTGGAGCCTGgtacgtccgttcacactctaccccaccattctgaaggttttcctgggtcc Alignment from GeneWise TGAGGTGAAAGTGAGTGTCCACAACAGGCTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATC-ATCCAGGGGGCTGTGGAGCCTG gaagactggagagtgcttactttcaattgcccagcatgtctgccactcagTGAGGTAAAAGTGAGTGTCCACAACAGATTGGAGCTGAGGACCTCTTCCAATGTCCTGGGCATCCATCCAGGGGGCTGTGGAGCCTGgtacgtccgttcacactctaccccaccattctgaaggttttcctgggtcc #### Naaladl1_ID1457_16 --> 2 - 2 Original Alignment ggCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCT-GCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTga agggaactctgcatccgcaggtagggctactatgtttcttgtgcttatagggCCTTTGGTGACGGCAGTAGCAAACTTTAAGGCTGCAGCTCGCCTCATTGGGTGAGCACATCCTGACCCTAGAGAAGAGCAGCCCTgagtaagggccagcagagggcaggtgtctggtagaggcacctggcatacatg Alignment from CESAR ggCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCT-GCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTga agggaactctgcatccgcaggtagggctactatgtttcttgtgcttatagggCCTTTGGTGACGGCAGTAGCAAACTTTAAGGCTGCAGCTCGCCTCATTGGGTGAGCACATCCTGACCCTAGAGAAGAGCAGCCCTgagtaagggccagcagagggcaggtgtctggtagaggcacctggcatacatg Alignment from Spaln_aa2Genome GGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCT-GCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA agggaactctgcatccgcaggtagggctactatgtttcttgtgcttatagGGCCTTTGGTGACGGCAGTAGCAAACTTTAAGGCTGCAGCTcGCCTCATTGGGTGAGCACATCCTGACCCTAGAGAAGAGCAGCCCTGAgtaagggccagcagagggcaggtgtctggtagaggcacctggcatacatg Alignment from Spaln_nt2Genome GGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCT-GCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA agggaactctgcatccgcaggtagggctactatgtttcttgtgcttatagGGCCTTTGGTGACGGCAGTAGCAAACTTTAAGGCTGCAGCTCGCCTCATTGGGTGAGCACATCCTGACCCTAGAGAAGAGCAGCCCTGAgtaagggccagcagagggcaggtgtctggtagaggcacctggcatacatg Alignment from Pairagon GGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCT-GCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA agggaactctgcatccgcaggtagggctactatgtttcttgtgcttatagGGCCTTTGGTGACGGCAGTAGCAAACTTTAAGGCTGCAGCTCGCCTCATTGGGTGAGCACATCCTGACCCTAGAGAAGAGCAGCCCTGAgtaagggccagcagagggcaggtgtctggtagaggcacctggcatacatg Alignment from Exonerate_protein2genome GGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCT-GCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA agggaactctgcatccgcaggtagggctactatgtttcttgtgcttatagGGCCTTTGGTGACGGCAGTAGCAAACTTTAAGGCTGCAGCTCGCCTCATTGGGTGAGCACATCCTGACCCTAGAGAAGAGCAGCCCTGAgtaagggccagcagagggcaggtgtctggtagaggcacctggcatacatg Alignment from Exonerate_coding2genome GGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCAGCT-GCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA agggaactctgcatccgcaggtagggctactatgtttcttgtgcttatagGGCCTTTGGTGACGGCAGTAGCAAACTTTAAGGCTGCAGCTCGCCTCATTGGGTGAGCACATCCTGACCCTAGAGAAGAGCAGCCCTGAgtaagggccagcagagggcaggtgtctggtagaggcacctggcatacatg Alignment from GeneWise -------------------------------------------------GGGCCTTTGGTGACTGCAGTGGCGAACTTTAAGGCTGCA-GCTGCATCCTTGGGTGAGCACATCTTGACCCTGCAGAAGAGCAGCCCTGA AGGGAACTCTGCATCCGCAGGTAGGGCTACTATGTTTCTTGTGCTTATAGGGCCTTTGGTGACGGCAGTAGCAAACTTTAAGGCTGCAGCTCGCCTCATTGGGTGAGCACATCCTGACCCTAGAGAAGAGCAGCCCTGAgtaagggccagcagagggcaggtgtctggtagaggcacctggcatacatg #### Ndufs8_ID193_3 --> 2 - 1 Original Alignment agTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAG-TCCGCAACTGACAATGCAGCTCGGATT---CTGATGTGGACAGAACTCATCCGAg cctgaacttgaacagcgttgccattaaccatttcttccctctgcttacagagTATGTAAACAAGAAAGAACAAGAGTCTGAGGTAGACATGAAGCTCTGCAACTGACAATGCTGCTCAGATTCTGATGATGTGGACAGAACTAATCCGGggtgagtaccagtgaagagacaagaggggaaagtcaagcatcaatgtctgg Alignment from CESAR agTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAG-TCCGCAACTGACAATGCAGCTCGGATTCTG---ATGTGGACAGAACTCATCCGAg cctgaacttgaacagcgttgccattaaccatttcttccctctgcttacagagTATGTAAACAAGAAAGAACAAGAGTCTGAGGTAGACATGAAGCTCTGCAACTGACAATGCTGCTCAGATTCTGATGATGTGGACAGAACTAATCCGGggtgagtaccagtgaagagacaagaggggaaagtcaagcatcaatgtctgg Alignment from Spaln_aa2Genome AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAG-TCCGCAACTGACAATGCAGCTCGGATTCTG---ATGTGGACAGAACTCATCCGAG cctgaacttgaacagcgttgccattaaccatttcttccctctgcttacagAGTATGTAAACAAGAAAGAACAAGAGTCTGAGGTAGACATGAAGcTCTGCAACTGACAATGCTGCTCAGATTCTGATGATGTGGACAGAACTAATCCGGGgtgagtaccagtgaagagacaagaggggaaagtcaagcatcaatgtctgg Alignment from Spaln_nt2Genome AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAG-TCCGCAACTGACAATGCAGCTCGGATTC---TGATGTGGACAGAACTCATCCGAG cctgaacttgaacagcgttgccattaaccatttcttccctctgcttacagAGTATGTAAACAAGAAAGAACAAGAGTCTGAGGTAGACATGAAGCTCTGCAACTGACAATGCTGCTCAGATTCTGATGATGTGGACAGAACTAATCCGGGgtgagtaccagtgaagagacaagaggggaaagtcaagcatcaatgtctgg Alignment from Pairagon AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAG-TCCGCAACTGACAATGCAGCTCGGATTC---TGATGTGGACAGAACTCATCCGAG cctgaacttgaacagcgttgccattaaccatttcttccctctgcttacagAGTATGTAAACAAGAAAGAACAAGAGTCTGAGGTAGACATGAAGCTCTGCAACTGACAATGCTGCTCAGATTCTGATGATGTGGACAGAACTAATCCGGGgtgagtaccagtgaagagacaagaggggaaagtcaagcatcaatgtctgg Alignment from Exonerate_protein2genome AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAG-TCCGCAACTGACAATGCAGCTCGGATTCTG---ATGTGGACAGAACTCATCCGAG cctgaacttgaacagcgttgccattaaccatttcttccctctgcttacagAGTATGTAAACAAGAAAGAACAAGAGTCTGAGGTAGACATGAAGCTCTGCAACTGACAATGCTGCTCAGATTCTGATGATGTGGACAGAACTAATCCGGGgtgagtaccagtgaagagacaagaggggaaagtcaagcatcaatgtctgg Alignment from Exonerate_coding2genome AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAAC cctgaacttgaacagcgttgccattaaccatttcttccctctgcttacagagtatgtaaacaagaaagaacaagagtctgaggtagacatgaagctctgcaactgacaatgctgctcagattctgatgatgtggacagaactaatccgGGGTGAGTACCAGTGAAGAGACAAGAGGGGAAAGTCAAGCATCAATGTCTGG Alignment from GeneWise AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAG-TCCGCAACTGACAATGCAGCTCGGATTCTGATG---TGGACAGAACTCATCCGAG cctgaacttgaacagcgttgccattaaccatttcttccctctgcttacagAGTATGTAAACAAGAAAGAACAAGAGTCTGAGGTAGACATGAAGCTCTGCAACTGACAATGCTGCTCAGATTCTGATGATGTGGACAGAACTAATCCGGGgtgagtaccagtgaagagacaagaggggaaagtcaagcatcaatgtctgg #### Ndufv1_ID274_8 --> 0 - 1 Original Alignment ACAGACATTGTGAAAGCCATCGCT-CGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGg tattgtggggtgatggctaagatgtctggtacgtgtatgggctattttagACAGACATTGTGAAAGCCATTGCTCCATCTCATTGAGTTCTACAAGCATGAGAGCTGTGGTCAGTGTACCCCATGCCGTGAGggtgggctttctggaaagattgggatgttgttgctatgctgttctcaagat Alignment from CESAR ACAGACATTGTGAAAGCCATCGCT-CGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGg tattgtggggtgatggctaagatgtctggtacgtgtatgggctattttagACAGACATTGTGAAAGCCATTGCTCCATCTCATTGAGTTCTACAAGCATGAGAGCTGTGGTCAGTGTACCCCATGCCGTGAGggtgggctttctggaaagattgggatgttgttgctatgctgttctcaagat Alignment from Spaln_aa2Genome ACAGACATTGTGAAAGCCATCGCT-CGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGG tattgtggggtgatggctaagatgtctggtacgtgtatgggctattttagACAGACATTGTGAAAGCCATTGCTcCATCTCATTGAGTTCTACAAGCATGAGAGCTGTGGTCAGTGTACCCCATGCCGTGAGGgtgggctttctggaaagattgggatgttgttgctatgctgttctcaagat Alignment from Spaln_nt2Genome ACAGACATTGTGAAAGCCATCGCTCG-TCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGG tattgtggggtgatggctaagatgtctggtacgtgtatgggctattttagACAGACATTGTGAAAGCCATTGCTCCATCTCATTGAGTTCTACAAGCATGAGAGCTGTGGTCAGTGTACCCCATGCCGTGAGGgtgggctttctggaaagattgggatgttgttgctatgctgttctcaagat Alignment from Pairagon ACAGACATTGTGAAAGCCATCGCT-CGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGG tattgtggggtgatggctaagatgtctggtacgtgtatgggctattttagACAGACATTGTGAAAGCCATTGCTCCATCTCATTGAGTTCTACAAGCATGAGAGCTGTGGTCAGTGTACCCCATGCCGTGAGGgtgggctttctggaaagattgggatgttgttgctatgctgttctcaagat Alignment from Exonerate_protein2genome ACAGACATTGTGAAAGCCATCGCT-CGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGG tattgtggggtgatggctaagatgtctggtacgtgtatgggctattttagACAGACATTGTGAAAGCCATTGCTCCATCTCATTGAGTTCTACAAGCATGAGAGCTGTGGTCAGTGTACCCCATGCCGTGAGGgtgggctttctggaaagattgggatgttgttgctatgctgttctcaagat Alignment from Exonerate_coding2genome ACAGACATTGTGAAAGCCATCGCT-CGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGG tattgtggggtgatggctaagatgtctggtacgtgtatgggctattttagACAGACATTGTGAAAGCCATTGCTCCATCTCATTGAGTTCTACAAGCATGAGAGCTGTGGTCAGTGTACCCCATGCCGTGAGGgtgggctttctggaaagattgggatgttgttgctatgctgttctcaagat Alignment from GeneWise ACAGACATTGTGAAAGCCATCGCT-CGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGG tattgtggggtgatggctaagatgtctggtacgtgtatgggctattttagACAGACATTGTGAAAGCCATTGCTCCATCTCATTGAGTTCTACAAGCATGAGAGCTGTGGTCAGTGTACCCCATGCCGTGAGGgtgggctttctggaaagattgggatgttgttgctatgctgttctcaagat #### Ndufv1_ID276_6 --> 2 - 1 Original Alignment gaGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAAC-CACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTg ctcctcgttcctcctctggaaatccaccctcggccctccctctgctgcaggaGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACACAATTCAGGTACCAAATTGTTCAACATCTCTGGCCACGTCAACCCACCCATGCACTGTGGAGGAAGAGATGTCTGTACCACTGAAAGAGCTGATTGAGAAACATGCTggtaagtctggaaccaactctagagtagtgcttcagagagggctctgtagg Alignment from CESAR gaGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAAC-CACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTg ctcctcgttcctcctctggaaatccaccctcggccctccctctgctgcaggaGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACACAATTCAGGTACCAAATTGTTCAACATCTCTGGCCACGTCAACCCACCCATGCACTGTGGAGGAAGAGATGTCTGTACCACTGAAAGAGCTGATTGAGAAACATGCTggtaagtctggaaccaactctagagtagtgcttcagagagggctctgtagg Alignment from Spaln_aa2Genome GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAAC-CACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG ctcctcgttcctcctctggaaatccaccctcggccctccctctgctgcagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACACAATTCAGGTACCAAATTGTTCAACATCTCTGGCCACGTCAACcCACCCATGCACTGTGGAGGAAGAGATGTCTGTACCACTGAAAGAGCTGATTGAGAAACATGCTGgtaagtctggaaccaactctagagtagtgcttcagagagggctctgtagg Alignment from Spaln_nt2Genome GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAA-CCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG ctcctcgttcctcctctggaaatccaccctcggccctccctctgctgcagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACACAATTCAGGTACCAAATTGTTCAACATCTCTGGCCACGTCAACCCACCCATGCACTGTGGAGGAAGAGATGTCTGTACCACTGAAAGAGCTGATTGAGAAACATGCTGgtaagtctggaaccaactctagagtagtgcttcagagagggctctgtagg Alignment from Pairagon GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAA-CCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG ctcctcgttcctcctctggaaatccaccctcggccctccctctgctgcagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACACAATTCAGGTACCAAATTGTTCAACATCTCTGGCCACGTCAACCCACCCATGCACTGTGGAGGAAGAGATGTCTGTACCACTGAAAGAGCTGATTGAGAAACATGCTGgtaagtctggaaccaactctagagtagtgcttcagagagggctctgtagg Alignment from Exonerate_protein2genome GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAAC-CACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG ctcctcgttcctcctctggaaatccaccctcggccctccctctgctgcagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACACAATTCAGGTACCAAATTGTTCAACATCTCTGGCCACGTCAACCCACCCATGCACTGTGGAGGAAGAGATGTCTGTACCACTGAAAGAGCTGATTGAGAAACATGCTGgtaagtctggaaccaactctagagtagtgcttcagagagggctctgtagg Alignment from Exonerate_coding2genome GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAAC-CACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG ctcctcgttcctcctctggaaatccaccctcggccctccctctgctgcagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACACAATTCAGGTACCAAATTGTTCAACATCTCTGGCCACGTCAACCCACCCATGCACTGTGGAGGAAGAGATGTCTGTACCACTGAAAGAGCTGATTGAGAAACATGCTGgtaagtctggaaccaactctagagtagtgcttcagagagggctctgtagg Alignment from GeneWise GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCAGGTACCAAATTGTTTAACATCTCTGGCCATGTC-AACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTGGT------------------------------------------------ ctcctcgttcctcctctggaaatccaccctcggccctccctctgctgcagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACACAATTCAGGTACCAAATTGTTCAACATCTCTGGCCACGTCAACCCACCCATGCACTGTGGAGGAAGAGATGTCTGTACCACTGAAAGAGCTGATTGAGAAACATGCTGGTAAGTCTGGAACCAACTCTAGAGTAGTGCTTCAGAGAGGGCTCTGTAGG #### Nfkb2_ID9828_6 --> 1 - 1 Original Alignment aTTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGT-CTCCGCTCCAAGCCTCAGGGCCTTACAg gagccctcatggtcaaagtggatccaaaaaccccactctctccgagccagaTTTAATAATTTGGGT------CATGTAACCAAGAAGAACATGATGGAGATAATGATCCAGAAACTTCAGAGGCAGCGTCCTCCGATCCAAACCTCAGGGCCTTACAggtgagttaataaaaggtgtcctgagaggtgttcctacaggggccaagaag Alignment from CESAR aTTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGT-CTCCGCTCCAAGCCTCAGGGCCTTACAg gagccctcatggtcaaagtggatccaaaaaccccactctctccgagccagaTTTAATAATTTGGGT------CATGTAACCAAGAAGAACATGATGGAGATAATGATCCAGAAACTTCAGAGGCAGCGTCCTCCGATCCAAACCTCAGGGCCTTACAggtgagttaataaaaggtgtcctgagaggtgttcctacaggggccaagaag Alignment from Spaln_aa2Genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGT-CTCCGCTCCAAGCCTCAGGGCCTTACAG gagccctcatggtcaaagtggatccaaaaaccccactctctccgagccagATTTAATAATTTGGGT------CATGTAACCAAGAAGAACATGATGGAGATAATGATCCAGAAACTTCAGAGGCAGCGTcCTCCGATCCAAACCTCAGGGCCTTACAGgtgagttaataaaaggtgtcctgagaggtgttcctacaggggccaagaag Alignment from Spaln_nt2Genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTC-TCCGCTCCAAGCCTCAGGGCCTTACAG gagccctcatggtcaaagtggatccaaaaaccccactctctccgagccagATTTAATAATTTGGGT------CATGTAACCAAGAAGAACATGATGGAGATAATGATCCAGAAACTTCAGAGGCAGCGTCCTCCGATCCAAACCTCAGGGCCTTACAGgtgagttaataaaaggtgtcctgagaggtgttcctacaggggccaagaag Alignment from Pairagon ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGT-CTCCGCTCCAAGCCTCAGGGCCTTACAG gagccctcatggtcaaagtggatccaaaaaccccactctctccgagccagATTTAATAATTTGGGT------CATGTAACCAAGAAGAACATGATGGAGATAATGATCCAGAAACTTCAGAGGCAGCGTCCTCCGATCCAAACCTCAGGGCCTTACAGgtgagttaataaaaggtgtcctgagaggtgttcctacaggggccaagaag Alignment from Exonerate_protein2genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGT-CTCCGCTCCAAGCCTCAGGGCCTTACAG gagccctcatggtcaaagtggatccaaaaaccccactctctccgagccagATTTAATAATTTGGGT------CATGTAACCAAGAAGAACATGATGGAGATAATGATCCAGAAACTTCAGAGGCAGCGTCCTCCGATCCAAACCTCAGGGCCTTACAGgtgagttaataaaaggtgtcctgagaggtgttcctacaggggccaagaag Alignment from Exonerate_coding2genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGT-CTCCGCTCCAAGCCTCAGGGCCTTACAG gagccctcatggtcaaagtggatccaaaaaccccactctctccgagccagATTTAATAATTTGGGT------CATGTAACCAAGAAGAACATGATGGAGATAATGATCCAGAAACTTCAGAGGCAGCGTCCTCCGATCCAAACCTCAGGGCCTTACAGgtgagttaataaaaggtgtcctgagaggtgttcctacaggggccaagaag Alignment from GeneWise ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGT-CTCCGCTCCAAGCCTCAGGGCCTTACAG gagccctcatggtcaaagtggatccaaaaaccccactctctccgagccagATTTAATAATTTGGGT------CATGTAACCAAGAAGAACATGATGGAGATAATGATCCAGAAACTTCAGAGGCAGCGTCCTCCGATCCAAACCTCAGGGCCTTACAGgtgagttaataaaaggtgtcctgagaggtgttcctacaggggccaagaag #### Nfkb2_ID9829_7 --> 2 - 1 Original Alignment agGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTC-ATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCa gggccaagaagagcagcccagagcttgcctttacaaatttctacttttagagGCTGAGCGGCGGGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCCATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCTAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCagtaaatactctgcagggggccaagcacacattgacaagagtgcacttgag Alignment from CESAR agGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTC-ATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCa gggccaagaagagcagcccagagcttgcctttacaaatttctacttttagagGCTGAGCGGCGGGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCCATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCTAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCagtaaatactctgcagggggccaagcacacattgacaagagtgcacttgag Alignment from Spaln_aa2Genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTC-ATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA gggccaagaagagcagcccagagcttgcctttacaaatttctacttttagAGGCTGAGCGGCGGGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCcATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCTAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCAgtaaatactctgcagggggccaagcacacattgacaagagtgcacttgag Alignment from Spaln_nt2Genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGT-CATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA gggccaagaagagcagcccagagcttgcctttacaaatttctacttttagAGGCTGAGCGGCGGGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCCATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCTAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCAgtaaatactctgcagggggccaagcacacattgacaagagtgcacttgag Alignment from Pairagon AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGT-CATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA gggccaagaagagcagcccagagcttgcctttacaaatttctacttttagAGGCTGAGCGGCGGGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCCATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCTAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCAgtaaatactctgcagggggccaagcacacattgacaagagtgcacttgag Alignment from Exonerate_protein2genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTC-ATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA gggccaagaagagcagcccagagcttgcctttacaaatttctacttttagAGGCTGAGCGGCGGGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCCATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCTAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCAgtaaatactctgcagggggccaagcacacattgacaagagtgcacttgag Alignment from Exonerate_coding2genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTC-ATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA gggccaagaagagcagcccagagcttgcctttacaaatttctacttttagAGGCTGAGCGGCGGGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCCATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCTAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCAgtaaatactctgcagggggccaagcacacattgacaagagtgcacttgag Alignment from GeneWise AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAA-GTCATGGATCTGAGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA gggccaagaagagcagcccagagcttgcctttacaaatttctacttttagAGGCTGAGCGGCGGGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTCCATGGATCTGAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCTAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCAgtaaatactctgcagggggccaagcacacattgacaagagtgcacttgag #### Nfkb2_ID9832_10 --> 0 - 1 Original Alignment TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACG-GTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTACCCTCTGGTGGAAg tatggacatacattgctggcactatgttgccttcttttgcacgcttgtagTATGCCATCGTGTTCCGGACACCACCCTATCACAAGATGAAGATCGAGAGGCCTGTAACACGTGTTCCTGCAGCTGAAGCGCAAGCGTGGGGGTGATGTCTCAGACTCCAAACAGTACACATATTACCCTTTGGTAGAAggtgagtcaggcttcagcattcttaaaagctagacggaatcaggccagcca Alignment from CESAR TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACG-GTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTACCCTCTGGTGGAAg tatggacatacattgctggcactatgttgccttcttttgcacgcttgtagTATGCCATCGTGTTCCGGACACCACCCTATCACAAGATGAAGATCGAGAGGCCTGTAACACGTGTTCCTGCAGCTGAAGCGCAAGCGTGGGGGTGATGTCTCAGACTCCAAACAGTACACATATTACCCTTTGGTAGAAggtgagtcaggcttcagcattcttaaaagctagacggaatcaggccagcca Alignment from Spaln_aa2Genome TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACG-GTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTACCCTCTGGTGGAAG tatggacatacattgctggcactatgttgccttcttttgcacgcttgtagTATGCCATCGTGTTCCGGACACCACCCTATCACAAGATGAAGATCGAGAGGCCTGTAACAcGTGTTCCTGCAGCTGAAGCGCAAGCGTGGGGGTGATGTCTCAGACTCCAAACAGTACACATATTACCCTTTGGTAGAAGgtgagtcaggcttcagcattcttaaaagctagacggaatcaggccagcca Alignment from Spaln_nt2Genome TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACG-GTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTACCCTCTGGTGGAAG tatggacatacattgctggcactatgttgccttcttttgcacgcttgtagTATGCCATCGTGTTCCGGACACCACCCTATCACAAGATGAAGATCGAGAGGCCTGTAACACGTGTTCCTGCAGCTGAAGCGCAAGCGTGGGGGTGATGTCTCAGACTCCAAACAGTACACATATTACCCTTTGGTAGAAGgtgagtcaggcttcagcattcttaaaagctagacggaatcaggccagcca Alignment from Pairagon TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACG-GTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTACCCTCTGGTGGAAG tatggacatacattgctggcactatgttgccttcttttgcacgcttgtagTATGCCATCGTGTTCCGGACACCACCCTATCACAAGATGAAGATCGAGAGGCCTGTAACACGTGTTCCTGCAGCTGAAGCGCAAGCGTGGGGGTGATGTCTCAGACTCCAAACAGTACACATATTACCCTTTGGTAGAAGgtgagtcaggcttcagcattcttaaaagctagacggaatcaggccagcca Alignment from Exonerate_protein2genome TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACG-GTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTACCCTCTGGTGGAAG tatggacatacattgctggcactatgttgccttcttttgcacgcttgtagTATGCCATCGTGTTCCGGACACCACCCTATCACAAGATGAAGATCGAGAGGCCTGTAACACGTGTTCCTGCAGCTGAAGCGCAAGCGTGGGGGTGATGTCTCAGACTCCAAACAGTACACATATTACCCTTTGGTAGAAGgtgagtcaggcttcagcattcttaaaagctagacggaatcaggccagcca Alignment from Exonerate_coding2genome TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACG-GTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTACCCTCTGGTGGAAG tatggacatacattgctggcactatgttgccttcttttgcacgcttgtagTATGCCATCGTGTTCCGGACACCACCCTATCACAAGATGAAGATCGAGAGGCCTGTAACACGTGTTCCTGCAGCTGAAGCGCAAGCGTGGGGGTGATGTCTCAGACTCCAAACAGTACACATATTACCCTTTGGTAGAAGgtgagtcaggcttcagcattcttaaaagctagacggaatcaggccagcca Alignment from GeneWise TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACG-GTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTACCCTCTGGTGGAAG tatggacatacattgctggcactatgttgccttcttttgcacgcttgtagTATGCCATCGTGTTCCGGACACCACCCTATCACAAGATGAAGATCGAGAGGCCTGTAACACGTGTTCCTGCAGCTGAAGCGCAAGCGTGGGGGTGATGTCTCAGACTCCAAACAGTACACATATTACCCTTTGGTAGAAGgtgagtcaggcttcagcattcttaaaagctagacggaatcaggccagcca #### Nfkb2_ID9837_15 --> 0 - 1 Original Alignment ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCA-GACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCTCTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGg gattgaaagcaagaagtctaaagctggcttctctcttccccttttcccagACACCTCTGCATCTTGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTAGGTGCACGACCCCACGCTGCTGGATAGGCATGGAGACTCTGCCCTCCACTTGGCTCTCAGGGCAGGTGCAGCTGCCCCTGAGCTGTTGCAGGCACTGTTGCGCAGTGAAGCCCATGCTGTGCCCCAAATA---CACATGCCTGATTTTGAGggtaggttgccaattgctcttgtaccaagaacaaggatggaaacccaggag Alignment from CESAR ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCA-GACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCTCTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGg gattgaaagcaagaagtctaaagctggcttctctcttccccttttcccagACACCTCTGCATCTTGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTAGGTGCACGACCCCACGCTGCTGGATAGGCATGGAGACTCTGCCCTCCACTTGGCTCTCAGGGCAGGTGCAGCTGCCCCTGAGCTGTTGCAGGCACTGTTGCGCAGTGAAGCCCATGCTGTGCCCCAAATA---CACATGCCTGATTTTGAGggtaggttgccaattgctcttgtaccaagaacaaggatggaaacccaggag Alignment from Spaln_aa2Genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCA-GACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCTCTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG gattgaaagcaagaagtctaaagctggcttctctcttccccttttcccagACACCTCTGCATCTTGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTAGGTGCAcGACCCCACGCTGCTGGATAGGCATGGAGACTCTGCCCTCCACTTGGCTCTCAGGGCAGGTGCAGCTGCCCCTGAGCTGTTGCAGGCACTGTTGCGCAGTGAAGCCCATGCTGTGCCCCAAATA---CACATGCCTGATTTTGAGGgtaggttgccaattgctcttgtaccaagaacaaggatggaaacccaggag Alignment from Spaln_nt2Genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCA-GACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCTCTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG gattgaaagcaagaagtctaaagctggcttctctcttccccttttcccagACACCTCTGCATCTTGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTAGGTGCACGACCCCACGCTGCTGGATAGGCATGGAGACTCTGCCCTCCACTTGGCTCTCAGGGCAGGTGCAGCTGCCCCTGAGCTGTTGCAGGCACTGTTGCGCAGTGAAGCCCATGCTGTGCCCCAAATA---CACATGCCTGATTTTGAGGgtaggttgccaattgctcttgtaccaagaacaaggatggaaacccaggag Alignment from Pairagon ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCA-GACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCTCTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG gattgaaagcaagaagtctaaagctggcttctctcttccccttttcccagACACCTCTGCATCTTGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTAGGTGCACGACCCCACGCTGCTGGATAGGCATGGAGACTCTGCCCTCCACTTGGCTCTCAGGGCAGGTGCAGCTGCCCCTGAGCTGTTGCAGGCACTGTTGCGCAGTGAAGCCCATGCTGTGCCCCAAATA---CACATGCCTGATTTTGAGGgtaggttgccaattgctcttgtaccaagaacaaggatggaaacccaggag Alignment from Exonerate_protein2genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCA-GACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCTCTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG gattgaaagcaagaagtctaaagctggcttctctcttccccttttcccagACACCTCTGCATCTTGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTAGGTGCACGACCCCACGCTGCTGGATAGGCATGGAGACTCTGCCCTCCACTTGGCTCTCAGGGCAGGTGCAGCTGCCCCTGAGCTGTTGCAGGCACTGTTGCGCAGTGAAGCCCATGCTGTGCCCCAAATA---CACATGCCTGATTTTGAGGgtaggttgccaattgctcttgtaccaagaacaaggatggaaacccaggag Alignment from Exonerate_coding2genome ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCA-GACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCTCTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG gattgaaagcaagaagtctaaagctggcttctctcttccccttttcccagACACCTCTGCATCTTGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTAGGTGCACGACCCCACGCTGCTGGATAGGCATGGAGACTCTGCCCTCCACTTGGCTCTCAGGGCAGGTGCAGCTGCCCCTGAGCTGTTGCAGGCACTGTTGCGCAGTGAAGCCCATGCTGTGCCCCAAATA---CACATGCCTGATTTTGAGGgtaggttgccaattgctcttgtaccaagaacaaggatggaaacccaggag Alignment from GeneWise ACGCCTCTGCACCTGGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGT-GCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCTCTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG gattgaaagcaagaagtctaaagctggcttctctcttccccttttcccagACACCTCTGCATCTTGCGGTAATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTAGGTGCACGACCCCACGCTGCTGGATAGGCATGGAGACTCTGCCCTCCACTTGGCTCTCAGGGCAGGTGCAGCTGCCCCTGAGCTGTTGCAGGCACTGTTGCGCAGTGAAGCCCATGCTGTGCCCCAAATA---CACATGCCTGATTTTGAGGgtaggttgccaattgctcttgtaccaagaacaaggatggaaacccaggag #### Nfkb2_ID9839_17 --> 0 - 1 Original Alignment CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGA-CTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTg gggcttggttagctggccagactttgctctccttgatttttacatttcagCTCCATGCCAATGTGAATGCTTGGACCTTTGCTGGAAACACACCACTCCACCTGGCAGCTGGACCTCGGATCCCCAACTCTTTCTCGCCTCCTTCTAAAGGCTggtatgacttaccattagtgtatgaagggcaagggggggaagtgggaaccc Alignment from CESAR CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGA-CTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTg gggcttggttagctggccagactttgctctccttgatttttacatttcagCTCCATGCCAATGTGAATGCTTGGACCTTTGCTGGAAACACACCACTCCACCTGGCAGCTGGACCTCGGATCCCCAACTCTTTCTCGCCTCCTTCTAAAGGCTggtatgacttaccattagtgtatgaagggcaagggggggaagtgggaaccc Alignment from Spaln_aa2Genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGA-CTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gggcttggttagctggccagactttgctctccttgatttttacatttcagCTCCATGCCAATGTGAATGCTTGGACCTTTGCTGGAAACACACCACTCCACCTGGCAGCTGGAcCTCGGATCCCCAACTCTTTCTCGCCTCCTTCTAAAGGCTGgtatgacttaccattagtgtatgaagggcaagggggggaagtgggaaccc Alignment from Spaln_nt2Genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGA-CTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gggcttggttagctggccagactttgctctccttgatttttacatttcagCTCCATGCCAATGTGAATGCTTGGACCTTTGCTGGAAACACACCACTCCACCTGGCAGCTGGACCTCGGATCCCCAACTCTTTCTCGCCTCCTTCTAAAGGCTGgtatgacttaccattagtgtatgaagggcaagggggggaagtgggaaccc Alignment from Pairagon CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGA-CTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gggcttggttagctggccagactttgctctccttgatttttacatttcagCTCCATGCCAATGTGAATGCTTGGACCTTTGCTGGAAACACACCACTCCACCTGGCAGCTGGACCTCGGATCCCCAACTCTTTCTCGCCTCCTTCTAAAGGCTGgtatgacttaccattagtgtatgaagggcaagggggggaagtgggaaccc Alignment from Exonerate_protein2genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGA-CTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gggcttggttagctggccagactttgctctccttgatttttacatttcagCTCCATGCCAATGTGAATGCTTGGACCTTTGCTGGAAACACACCACTCCACCTGGCAGCTGGACCTCGGATCCCCAACTCTTTCTCGCCTCCTTCTAAAGGCTGgtatgacttaccattagtgtatgaagggcaagggggggaagtgggaaccc Alignment from Exonerate_coding2genome CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGA-CTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gggcttggttagctggccagactttgctctccttgatttttacatttcagCTCCATGCCAATGTGAATGCTTGGACCTTTGCTGGAAACACACCACTCCACCTGGCAGCTGGACCTCGGATCCCCAACTCTTTCTCGCCTCCTTCTAAAGGCTGgtatgacttaccattagtgtatgaagggcaagggggggaagtgggaaccc Alignment from GeneWise CTCCATGCTAATGTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGA-CTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gggcttggttagctggccagactttgctctccttgatttttacatttcagCTCCATGCCAATGTGAATGCTTGGACCTTTGCTGGAAACACACCACTCCACCTGGCAGCTGGACCTCGGATCCCCAACTCTTTCTCGCCTCCTTCTAAAGGCTGgtatgacttaccattagtgtatgaagggcaagggggggaagtgggaaccc #### Nfkb2_ID9840_18 --> 2 - 0 Original Alignment gtGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAA-AGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG caatttaggagcctccactagtctttttcagtcctttcccaccccactaggtGCAGATATCCATACAGAGAATGAGGAGCCTCTGTGTCCACTGCCTTCACCCTCAACCTCTGGGAGTGACTCCGACTCTGAGGGGCCTGAAAGGGATACTCAACAGAACCTTCCGAGGTCATACCCCTCTTGACCTCACTTGCAGTACCAAGgtgactccacccttgtagaagatgtgctgagggacttgggacctgctgga Alignment from CESAR gtGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAAC-TTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG caatttaggagcctccactagtctttttcagtcctttcccaccccactaggtGCAGATATCCATACAGAGAATGAGGAGCCTCTGTGTCCACTGCCTTCACCCTCAACCTCTGGGAGTGACTCCGACTCTGAGGGGCCTGAAAGGGATACTCAACAGAACCTTCCGAGGTCATACCCCTCTTGACCTCACTTGCAGTACCAAGgtgactccacccttgtagaagatgtgctgagggacttgggacctgctgga Alignment from Spaln_aa2Genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAAC-TTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG caatttaggagcctccactagtctttttcagtcctttcccaccccactagGTGCAGATATCCATACAGAGAATGAGGAGCCTCTGTGTCCACTGCCTTCACCCTCAACCTCTGGGAGTGACTCCGACTCTGAGGGGCCTGAAAGGGATACTCAACAGAACcTTCCGAGGTCATACCCCTCTTGACCTCACTTGCAGTACCAAGgtgactccacccttgtagaagatgtgctgagggacttgggacctgctgga Alignment from Spaln_nt2Genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAA-AGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG caatttaggagcctccactagtctttttcagtcctttcccaccccactagGTGCAGATATCCATACAGAGAATGAGGAGCCTCTGTGTCCACTGCCTTCACCCTCAACCTCTGGGAGTGACTCCGACTCTGAGGGGCCTGAAAGGGATACTCAACAGAACCTTCCGAGGTCATACCCCTCTTGACCTCACTTGCAGTACCAAGgtgactccacccttgtagaagatgtgctgagggacttgggacctgctgga Alignment from Pairagon GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAA-AGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG caatttaggagcctccactagtctttttcagtcctttcccaccccactagGTGCAGATATCCATACAGAGAATGAGGAGCCTCTGTGTCCACTGCCTTCACCCTCAACCTCTGGGAGTGACTCCGACTCTGAGGGGCCTGAAAGGGATACTCAACAGAACCTTCCGAGGTCATACCCCTCTTGACCTCACTTGCAGTACCAAGgtgactccacccttgtagaagatgtgctgagggacttgggacctgctgga Alignment from Exonerate_protein2genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAAC-TTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG caatttaggagcctccactagtctttttcagtcctttcccaccccactagGTGCAGATATCCATACAGAGAATGAGGAGCCTCTGTGTCCACTGCCTTCACCCTCAACCTCTGGGAGTGACTCCGACTCTGAGGGGCCTGAAAGGGATACTCAACAGAACCTTCCGAGGTCATACCCCTCTTGACCTCACTTGCAGTACCAAGgtgactccacccttgtagaagatgtgctgagggacttgggacctgctgga Alignment from Exonerate_coding2genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAAC-TTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG caatttaggagcctccactagtctttttcagtcctttcccaccccactagGTGCAGATATCCATACAGAGAATGAGGAGCCTCTGTGTCCACTGCCTTCACCCTCAACCTCTGGGAGTGACTCCGACTCTGAGGGGCCTGAAAGGGATACTCAACAGAACCTTCCGAGGTCATACCCCTCTTGACCTCACTTGCAGTACCAAGgtgactccacccttgtagaagatgtgctgagggacttgggacctgctgga Alignment from GeneWise GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGA-AACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG caatttaggagcctccactagtctttttcagtcctttcccaccccactagGTGCAGATATCCATACAGAGAATGAGGAGCCTCTGTGTCCACTGCCTTCACCCTCAACCTCTGGGAGTGACTCCGACTCTGAGGGGCCTGAAAGGGATACTCAACAGAACCTTCCGAGGTCATACCCCTCTTGACCTCACTTGCAGTACCAAGgtgactccacccttgtagaagatgtgctgagggacttgggacctgctgga #### Noc3l_ID7659_16 --> 2 - 1 Original Alignment gtGATGTTTTAAATATT-GACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAg gtcactgaagactgatttaaccaaagttttctacctttgtgtcttcataggaGATGTTTTGAATATTCGACCCTATGAAATTTTATACACATCTCTTCCAGACACTGTTTACGTTACATGCAggtatagcatgcttggtacgtatgtgtgtccaaaagcctttttgatcatag Alignment from CESAR gtGATGTTTTAAATATT-GACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAg gtcactgaagactgatttaaccaaagttttctacctttgtgtcttcataggaGATGTTTTGAATATTCGACCCTATGAAATTTTATACACATCTCTTCCAGACACTGTTTACGTTACATGCAggtatagcatgcttggtacgtatgtgtgtccaaaagcctttttgatcatag Alignment from Spaln_aa2Genome GTGATGTTTTAAATATT-GACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG gtcactgaagactgatttaaccaaagttttctacctttgtgtcttcatagGAGATGTTTTGAATATTcGACCCTATGAAATTTTATACACATCTCTTCCAGACACTGTTTACGTTACATGCAGgtatagcatgcttggtacgtatgtgtgtccaaaagcctttttgatcatag Alignment from Spaln_nt2Genome GTGATGTTTTAAATATT-GACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG gtcactgaagactgatttaaccaaagttttctacctttgtgtcttcatagGAGATGTTTTGAATATTCGACCCTATGAAATTTTATACACATCTCTTCCAGACACTGTTTACGTTACATGCAGgtatagcatgcttggtacgtatgtgtgtccaaaagcctttttgatcatag Alignment from Pairagon ----------------------------------------------------GATGTTTTAAATATT-GACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG GTCACTGAAGACTGATTTAACCAAAGTTTTCTACCTTTGTGTCTTCATAGGAGATGTTTTGAATATTCGACCCTATGAAATTTTATACACATCTCTTCCAGACACTGTTTACGTTACATGCAGgtatagcatgcttggtacgtatgtgtgtccaaaagcctttttgatcatag Alignment from Exonerate_protein2genome GTGATGTTTTAAATATT-GACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG gtcactgaagactgatttaaccaaagttttctacctttgtgtcttcatagGAGATGTTTTGAATATTCGACCCTATGAAATTTTATACACATCTCTTCCAGACACTGTTTACGTTACATGCAGgtatagcatgcttggtacgtatgtgtgtccaaaagcctttttgatcatag Alignment from Exonerate_coding2genome GTGATGTTTTAAATATT-GACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG gtcactgaagactgatttaaccaaagttttctacctttgtgtcttcatagGAGATGTTTTGAATATTCGACCCTATGAAATTTTATACACATCTCTTCCAGACACTGTTTACGTTACATGCAGgtatagcatgcttggtacgtatgtgtgtccaaaagcctttttgatcatag Alignment from GeneWise ATTCTATACACATCTCTACAAGACACTGTTCACATTACAT ACTGAAGACTGATTTAACCAAA---GTTTTCTACCTTTGTgtcttcataggagatgttttgaatattcgaccctatgaaattttatacacatctcttccagacactgtttacgttacatgcaggtatagcatgcttggtacgtatgtgtgtccaaaagcctttttgatcatag #### Noc3l_ID7660_15 --> 0 - 1 Original Alignment GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATT-CTTTCTGGACAAg agaaagcactctcatttgttttgttccttcttctcttctcttcccttaagGAACTAAGTTATCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCATATTCCTTTCTGGACAAggtaagttagtccatttggcctcctttcccctgtcactgaagactgattta Alignment from CESAR GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATT-CTTTCTGGACAAg agaaagcactctcatttgttttgttccttcttctcttctcttcccttaagGAACTAAGTTATCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCATATTCCTTTCTGGACAAggtaagttagtccatttggcctcctttcccctgtcactgaagactgattta Alignment from Spaln_aa2Genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATT-CTTTCTGGACAAG agaaagcactctcatttgttttgttccttcttctcttctcttcccttaagGAACTAAGTTATCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCATATTcCTTTCTGGACAAGgtaagttagtccatttggcctcctttcccctgtcactgaagactgattta Alignment from Spaln_nt2Genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTC-TTTCTGGACAAG agaaagcactctcatttgttttgttccttcttctcttctcttcccttaagGAACTAAGTTATCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCATATTCCTTTCTGGACAAGgtaagttagtccatttggcctcctttcccctgtcactgaagactgattta Alignment from Pairagon GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATT-CTTTCTGGACAAG agaaagcactctcatttgttttgttccttcttctcttctcttcccttaagGAACTAAGTTATCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCATATTCCTTTCTGGACAAGgtaagttagtccatttggcctcctttcccctgtcactgaagactgattta Alignment from Exonerate_protein2genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATT-CTTTCTGGACAAG agaaagcactctcatttgttttgttccttcttctcttctcttcccttaagGAACTAAGTTATCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCATATTCCTTTCTGGACAAGgtaagttagtccatttggcctcctttcccctgtcactgaagactgattta Alignment from Exonerate_coding2genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATT-CTTTCTGGACAAG agaaagcactctcatttgttttgttccttcttctcttctcttcccttaagGAACTAAGTTATCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCATATTCCTTTCTGGACAAGgtaagttagtccatttggcctcctttcccctgtcactgaagactgattta Alignment from GeneWise GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTCTTTCTGGACAA-- agaaagcactctcatttgttttgttccttcttctcttctcttcccttaagGAACTAAGTTATCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCATATTCCTTTCTGGACAAGgtaagttagtccatttggcctcctttcccctgtcactgaagactgattta #### Npas4_ID775_6 --> 2 - 2 Original Alignment tgGCTGAAAGTGGAGAT-ATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCag gtgggtggattgatagaccttgagatgtccttattcccctacgaatgcagtgGCTGAAAGTGGAGATCATTCAGGCTGAAATGGTGGTGAGGCTTCAAGCCAAGCATGGAGGCTGGACATGGATTTATTGCATGTTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATaggtacggtgtaagccataagatggtgaagacagctgagttcagcatagaat Alignment from CESAR tgGCTGAAAGTGGAGAT-ATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCag gtgggtggattgatagaccttgagatgtccttattcccctacgaatgcagtgGCTGAAAGTGGAGATCATTCAGGCTGAAATGGTGGTGAGGCTTCAAGCCAAGCATGGAGGCTGGACATGGATTTATTGCATGTTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATaggtacggtgtaagccataagatggtgaagacagctgagttcagcatagaat Alignment from Spaln_aa2Genome TGGCTGAAAGTGGAGAT-ATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggattgatagaccttgagatgtccttattcccctacgaatgcagTGGCTGAAAGTGGAGATcATTCAGGCTGAAATGGTGGTGAGGCTTCAAGCCAAGCATGGAGGCTGGACATGGATTTATTGCATGTTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATAGgtacggtgtaagccataagatggtgaagacagctgagttcagcatagaat Alignment from Spaln_nt2Genome TGGCTGAAAGTGGAGAT-ATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggattgatagaccttgagatgtccttattcccctacgaatgcagTGGCTGAAAGTGGAGATCATTCAGGCTGAAATGGTGGTGAGGCTTCAAGCCAAGCATGGAGGCTGGACATGGATTTATTGCATGTTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATAGgtacggtgtaagccataagatggtgaagacagctgagttcagcatagaat Alignment from Pairagon TGGCTGAAAGTGGAGAT-ATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggattgatagaccttgagatgtccttattcccctacgaatgcagTGGCTGAAAGTGGAGATCATTCAGGCTGAAATGGTGGTGAGGCTTCAAGCCAAGCATGGAGGCTGGACATGGATTTATTGCATGTTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATAGgtacggtgtaagccataagatggtgaagacagctgagttcagcatagaat Alignment from Exonerate_protein2genome TGGCTGAAAGTGGAGAT-ATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggattgatagaccttgagatgtccttattcccctacgaatgcagTGGCTGAAAGTGGAGATCATTCAGGCTGAAATGGTGGTGAGGCTTCAAGCCAAGCATGGAGGCTGGACATGGATTTATTGCATGTTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATAGgtacggtgtaagccataagatggtgaagacagctgagttcagcatagaat Alignment from Exonerate_coding2genome TGGCTGAAAGTGGAGAT-ATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggattgatagaccttgagatgtccttattcccctacgaatgcagTGGCTGAAAGTGGAGATCATTCAGGCTGAAATGGTGGTGAGGCTTCAAGCCAAGCATGGAGGCTGGACATGGATTTATTGCATGTTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATAGgtacggtgtaagccataagatggtgaagacagctgagttcagcatagaat Alignment from GeneWise TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggattgatagaccttgagatgtccttattcccctacgaatgcagtggctgaaagTGGAG---------ATCATTCAGGCTGAAATGGTGGTGAGGCTTCAAGCCAAGCATGGAGGCTGGACATGGATTTATTGCATGTTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATAGgtacggtgtaagccataagatggtgaagacagctgagttcagcatagaat #### Npm3_ID9577_3 --> 0 - 0 Original Alignment CTGTGCCTTACCGAG-GGGGCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tgttgtcagccaaccatcacctgaggcattcttccggcttcctctctcagCTGTGCCTTACTGAGCGCAGCCACAGACGAGTGTAATGTGGTAGAAGTTGTGGCCCGGGATTATGACAATCAGGAAATTGCAGTTCCTGTTGCAAACCTCAGGTTGTCTTGCCAGCCCATGgtacagttgagccattcattccccttgaagcctggcaggactgataattt Alignment from CESAR CTGTGCCTTACCGAG-GGGGCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tgttgtcagccaaccatcacctgaggcattcttccggcttcctctctcagCTGTGCCTTACTGAGCGCAGCCACAGACGAGTGTAATGTGGTAGAAGTTGTGGCCCGGGATTATGACAATCAGGAAATTGCAGTTCCTGTTGCAAACCTCAGGTTGTCTTGCCAGCCCATGgtacagttgagccattcattccccttgaagcctggcaggactgataattt Alignment from Spaln_aa2Genome CTGTGCCTTACCGAG-GGGGCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tgttgtcagccaaccatcacctgaggcattcttccggcttcctctctcagCTGTGCCTTACTGAGcGCAGCCACAGACGAGTGTAATGTGGTAGAAGTTGTGGCCCGGGATTATGACAATCAGGAAATTGCAGTTCCTGTTGCAAACCTCAGGTTGTCTTGCCAGCCCATGgtacagttgagccattcattccccttgaagcctggcaggactgataattt Alignment from Spaln_nt2Genome CTGTGCCTTACCGAGGGG-GCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tgttgtcagccaaccatcacctgaggcattcttccggcttcctctctcagCTGTGCCTTACTGAGCGCAGCCACAGACGAGTGTAATGTGGTAGAAGTTGTGGCCCGGGATTATGACAATCAGGAAATTGCAGTTCCTGTTGCAAACCTCAGGTTGTCTTGCCAGCCCATGgtacagttgagccattcattccccttgaagcctggcaggactgataattt Alignment from Pairagon CTGTGCCTTACCGAG-GGGGCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tgttgtcagccaaccatcacctgaggcattcttccggcttcctctctcagCTGTGCCTTACTGAGCGCAGCCACAGACGAGTGTAATGTGGTAGAAGTTGTGGCCCGGGATTATGACAATCAGGAAATTGCAGTTCCTGTTGCAAACCTCAGGTTGTCTTGCCAGCCCATGgtacagttgagccattcattccccttgaagcctggcaggactgataattt Alignment from Exonerate_protein2genome CTGTGCCTTACCGAG-GGGGCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tgttgtcagccaaccatcacctgaggcattcttccggcttcctctctcagCTGTGCCTTACTGAGCGCAGCCACAGACGAGTGTAATGTGGTAGAAGTTGTGGCCCGGGATTATGACAATCAGGAAATTGCAGTTCCTGTTGCAAACCTCAGGTTGTCTTGCCAGCCCATGgtacagttgagccattcattccccttgaagcctggcaggactgataattt Alignment from Exonerate_coding2genome CTGTGCCTTACCGAG-GGGGCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tgttgtcagccaaccatcacctgaggcattcttccggcttcctctctcagCTGTGCCTTACTGAGCGCAGCCACAGACGAGTGTAATGTGGTAGAAGTTGTGGCCCGGGATTATGACAATCAGGAAATTGCAGTTCCTGTTGCAAACCTCAGGTTGTCTTGCCAGCCCATGgtacagttgagccattcattccccttgaagcctggcaggactgataattt Alignment from GeneWise ----GCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tgttgtcagccaaccatcacctgaggcattcttccggcttcctctctcagctgtgccttactgagCGCAGCCACAGACGAGTGTAATGTGGTAGAAGTTGTGGCCCGGGATTATGACAATCAGGAAATTGCAGTTCCTGTTGCAAACCTCAGGTTGTCTTGCCAGCCCATGgtacagttgagccattcattccccttgaagcctggcaggactgataattt #### Npm3_ID9578_2 --> 2 - 0 Original Alignment gtTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGAC-ACGGAGCACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggtttgtttgtgtgtttaatccagggTGTGAGCTCTCTGGTCACACGCGCTCCTTCACTTTCAAGGTTGAAGAGGAAGATGACCACAGAGCAGGTGCTGGCGTTGAACATGgtaagagccacagagggagttagagatatgggacacctgttgtccctctc Alignment from CESAR gtTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGAC-ACGGAGCACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggtttgtttgtgtgtttaatccagggTGTGAGCTCTCTGGTCACACGCGCTCCTTCACTTTCAAGGTTGAAGAGGAAGATGACCACAGAGCAGGTGCTGGCGTTGAACATGgtaagagccacagagggagttagagatatgggacacctgttgtccctctc Alignment from Spaln_aa2Genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGAC-ACGGAGCACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggtttgtttgtgtgtttaatccagGGTGTGAGCTCTCTGGTCACACGCGCTCCTTCACTTTCAAGGTTGAAGAGGAAGATGACcACAGAGCAGGTGCTGGCGTTGAACATGgtaagagccacagagggagttagagatatgggacacctgttgtccctctc Alignment from Spaln_nt2Genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGAC-ACGGAGCACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggtttgtttgtgtgtttaatccagGGTGTGAGCTCTCTGGTCACACGCGCTCCTTCACTTTCAAGGTTGAAGAGGAAGATGACCACAGAGCAGGTGCTGGCGTTGAACATGgtaagagccacagagggagttagagatatgggacacctgttgtccctctc Alignment from Pairagon GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGA-CACGGAGCACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggtttgtttgtgtgtttaatccagGGTGTGAGCTCTCTGGTCACACGCGCTCCTTCACTTTCAAGGTTGAAGAGGAAGATGACCACAGAGCAGGTGCTGGCGTTGAACATGgtaagagccacagagggagttagagatatgggacacctgttgtccctctc Alignment from Exonerate_protein2genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGAC-ACGGAGCACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggtttgtttgtgtgtttaatccagGGTGTGAGCTCTCTGGTCACACGCGCTCCTTCACTTTCAAGGTTGAAGAGGAAGATGACCACAGAGCAGGTGCTGGCGTTGAACATGgtaagagccacagagggagttagagatatgggacacctgttgtccctctc Alignment from Exonerate_coding2genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGAC-ACGGAGCACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggtttgtttgtgtgtttaatccagGGTGTGAGCTCTCTGGTCACACGCGCTCCTTCACTTTCAAGGTTGAAGAGGAAGATGACCACAGAGCAGGTGCTGGCGTTGAACATGgtaagagccacagagggagttagagatatgggacacctgttgtccctctc Alignment from GeneWise GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGAC-ACGGAGCACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggtttgtttgtgtgtttaatccagGGTGTGAGCTCTCTGGTCACACGCGCTCCTTCACTTTCAAGGTTGAAGAGGAAGATGACCACAGAGCAGGTGCTGGCGTTGAACATGgtaagagccacagagggagttagagatatgggacacctgttgtccctctc #### Nt5c2_ID10036_17 --> 0 - 0 Original Alignment AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTAC-TACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gcggggacttgtatgtagttgcataacttccctgcctcctcctccctaagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGCCTGTTCCGCAGTGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCATTCATCAACCTGCTGTACCTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTGgtgagtaatgttactttcaactgacagttaagatggaccacaaaggtgat Alignment from CESAR AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTAC-TACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gcggggacttgtatgtagttgcataacttccctgcctcctcctccctaagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGCCTGTTCCGCAGTGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCATTCATCAACCTGCTGTACCTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTGgtgagtaatgttactttcaactgacagttaagatggaccacaaaggtgat Alignment from Spaln_aa2Genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCA-TTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gcggggacttgtatgtagttgcataacttccctgcctcctcctccctaagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGCCTGTTCCGCAGTGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCATTCATCAACCTGCTGTACCTACCCaTTCAGCTACCTCTTCAGAGCTGCCCATGTCCTGgtgagtaatgttactttcaactgacagttaagatggaccacaaaggtgat Alignment from Spaln_nt2Genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTA-CTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gcggggacttgtatgtagttgcataacttccctgcctcctcctccctaagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGCCTGTTCCGCAGTGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCATTCATCAACCTGCTGTACCTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTGgtgagtaatgttactttcaactgacagttaagatggaccacaaaggtgat Alignment from Pairagon AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTA-CTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gcggggacttgtatgtagttgcataacttccctgcctcctcctccctaagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGCCTGTTCCGCAGTGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCATTCATCAACCTGCTGTACCTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTGgtgagtaatgttactttcaactgacagttaagatggaccacaaaggtgat Alignment from Exonerate_protein2genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTAC-TACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gcggggacttgtatgtagttgcataacttccctgcctcctcctccctaagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGCCTGTTCCGCAGTGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCATTCATCAACCTGCTGTACCTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTGgtgagtaatgttactttcaactgacagttaagatggaccacaaaggtgat Alignment from Exonerate_coding2genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTAC-TACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gcggggacttgtatgtagttgcataacttccctgcctcctcctccctaagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGCCTGTTCCGCAGTGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCATTCATCAACCTGCTGTACCTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTGgtgagtaatgttactttcaactgacagttaagatggaccacaaaggtgat Alignment from GeneWise AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTG-TACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG gcggggacttgtatgtagttgcataacttccctgcctcctcctccctaagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGCCTGTTCCGCAGTGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCATTCATCAACCTGCTGTACCTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTGgtgagtaatgttactttcaactgacagttaagatggaccacaaaggtgat #### Nt5c2_ID10040_13 --> 0 - 1 Original Alignment AAAACTGGAAAACTGAAAATTGGCACCTACACGGGC-CCCCTGCAGCACGGCATTGTCTACTCAGGGg tgtctgggagagagttcaaatgaatttccagcagcccctctctcctctagAAAACTGGAAAACTGAAGATCGGCTCCTACACAGGCCCCCCTGCAGCAC---GTCGTCTACTCAGGGggtaagagagctgtctgtctgcttccctttcttgtggacgactctgcatgg Alignment from CESAR AAAACTGGAAAACTGAAAATTGGCACCTACACGGGCCCC-CTGCAGCACGGCATTGTCTACTCAGGGg tgtctgggagagagttcaaatgaatttccagcagcccctctctcctctagAAAACTGGAAAACTGAAGATCGGCTCCTACACAGGCCCCCCTGCAGCAC---GTCGTCTACTCAGGGggtaagagagctgtctgtctgcttccctttcttgtggacgactctgcatgg Alignment from Spaln_aa2Genome AAAACTGGAAAACTGAAAATTGGCACCTACACGGGCCCCCTG tgtctgggagagagttcaaatgaatttccagcagcccctctctcctctagAAAACTGGAAAACTGAAGATCGGCTCCTACACAGGCCCCCCTgcagcacgtcgtctactcagggggtaagagagctgtctgtctgcttccctttcttgtggacgactctgcatgg Alignment from Spaln_nt2Genome AAAACTGGAAAACTGAAAATTGGCACCTACACGGGCCCCC-TGCAGCACGGCATTGTCTACTCAGGGG tgtctgggagagagttcaaatgaatttccagcagcccctctctcctctagAAAACTGGAAAACTGAAGATCGGCTCCTACACAGGCCCCCCTGCAGCACG---TCGTCTACTCAGGGGgtaagagagctgtctgtctgcttccctttcttgtggacgactctgcatgg Alignment from Pairagon AAAACTGGAAAACTGAAAATTGGCACCTACACGGG-CCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgtctgggagagagttcaaatgaatttccagcagcccctctctcctctagAAAACTGGAAAACTGAAGATCGGCTCCTACACAGGCCCCCCTGCAGCACG---TCGTCTACTCAGGGGgtaagagagctgtctgtctgcttccctttcttgtggacgactctgcatgg Alignment from Exonerate_protein2genome AAAACTGGAAAACTGAAAATTGGCACCTACACGGGC-CCCCTGCAGCACGGCATTGTCTACTCAGGGG tgtctgggagagagttcaaatgaatttccagcagcccctctctcctctagAAAACTGGAAAACTGAAGATCGGCTCCTACACAGGCCCCCCTGCAGCAC---GTCGTCTACTCAGGGGgtaagagagctgtctgtctgcttccctttcttgtggacgactctgcatgg Alignment from Exonerate_coding2genome AAAACTGGAAAACTGAAAATTGGCACCTACACGGGC-CCCCTGCAGCACGGCATTGTCTACTCAGGGG tgtctgggagagagttcaaatgaatttccagcagcccctctctcctctagAAAACTGGAAAACTGAAGATCGGCTCCTACACAGGCCCCCCTGCAGCAC---GTCGTCTACTCAGGGGgtaagagagctgtctgtctgcttccctttcttgtggacgactctgcatgg Alignment from GeneWise AAAACTGGAAAACTGAAAATTGGCACCTACACGGGCCCC---------C tgtctgggagagagttcaaatgaatttccagcagcccctctctcctctagAAAACTGGAAAACTGAAGATCGGCTCCTACACAGGCCCCCCTGCAGCACgtcgtctactcagggggtaagagagctgtctgtctgcttccctttcttgtggacgactctgcatgg #### Nxf1_ID2344_4 --> 0 - 0 Original Alignment ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAG-AGCAAATGCAGTGTCCCCTTCAATCCCATCGAG actgaaatacccagctcagttacacgttcaccaacctctctgtcttccagATACCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGCAGCAAATGTAGTGTCCCATTCAACCCCATTGAGgtatccaagatagagttagatctgaaaggctgtgtaaggacgtggactac Alignment from CESAR ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAG-AGCAAATGCAGTGTCCCCTTCAATCCCATCGAG actgaaatacccagctcagttacacgttcaccaacctctctgtcttccagATACCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGCAGCAAATGTAGTGTCCCATTCAACCCCATTGAGgtatccaagatagagttagatctgaaaggctgtgtaaggacgtggactac Alignment from Spaln_aa2Genome ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAG-AGCAAATGCAGTGTCCCCTTCAATCCCATCGAG actgaaatacccagctcagttacacgttcaccaacctctctgtcttccagATACCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGcAGCAAATGTAGTGTCCCATTCAACCCCATTGAGgtatccaagatagagttagatctgaaaggctgtgtaaggacgtggactac Alignment from Spaln_nt2Genome ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAG-AGCAAATGCAGTGTCCCCTTCAATCCCATCGAG actgaaatacccagctcagttacacgttcaccaacctctctgtcttccagATACCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGCAGCAAATGTAGTGTCCCATTCAACCCCATTGAGgtatccaagatagagttagatctgaaaggctgtgtaaggacgtggactac Alignment from Pairagon ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAG-AGCAAATGCAGTGTCCCCTTCAATCCCATCGAG actgaaatacccagctcagttacacgttcaccaacctctctgtcttccagATACCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGCAGCAAATGTAGTGTCCCATTCAACCCCATTGAGgtatccaagatagagttagatctgaaaggctgtgtaaggacgtggactac Alignment from Exonerate_protein2genome ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAG-AGCAAATGCAGTGTCCCCTTCAATCCCATCGAG actgaaatacccagctcagttacacgttcaccaacctctctgtcttccagATACCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGCAGCAAATGTAGTGTCCCATTCAACCCCATTGAGgtatccaagatagagttagatctgaaaggctgtgtaaggacgtggactac Alignment from Exonerate_coding2genome ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAG-AGCAAATGCAGTGTCCCCTTCAATCCCATCGAG actgaaatacccagctcagttacacgttcaccaacctctctgtcttccagATACCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGCAGCAAATGTAGTGTCCCATTCAACCCCATTGAGgtatccaagatagagttagatctgaaaggctgtgtaaggacgtggactac Alignment from GeneWise ATTCCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAG-AGCAAATGCAGTGTCCCCTTCAATCCCATCGAG actgaaatacccagctcagttacacgttcaccaacctctctgtcttccagATACCTTATGGTAGAAAGTATGACAAAACGTGGCTTCTGAGCATGATTCAGCAGCAAATGTAGTGTCCCATTCAACCCCATTGAGgtatccaagatagagttagatctgaaaggctgtgtaaggacgtggactac #### Nxf1_ID2345_5 --> 0 - 0 Original Alignment TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCC-ACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtaaggacgtggactacaaattgaagattctttatccttcattttagTTTCACTATGAAAATACACGTGCTCATTTTTTTGTGGAGGATGCACACTACTGGTTCCACATTAAAAGGTGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtaagtagacaagggcctgtgaaacacagttagaacactaaggagcacta Alignment from CESAR TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCC-ACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtaaggacgtggactacaaattgaagattctttatccttcattttagTTTCACTATGAAAATACACGTGCTCATTTTTTTGTGGAGGATGCACACTACTGGTTCCACATTAAAAGGTGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtaagtagacaagggcctgtgaaacacagttagaacactaaggagcacta Alignment from Spaln_aa2Genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCC-ACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtaaggacgtggactacaaattgaagattctttatccttcattttagTTTCACTATGAAAATACACGTGCTCATTTTTTTGTGGAGGATGCAcACTACTGGTTCCACATTAAAAGGTGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtaagtagacaagggcctgtgaaacacagttagaacactaaggagcacta Alignment from Spaln_nt2Genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGC-CACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtaaggacgtggactacaaattgaagattctttatccttcattttagTTTCACTATGAAAATACACGTGCTCATTTTTTTGTGGAGGATGCACACTACTGGTTCCACATTAAAAGGTGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtaagtagacaagggcctgtgaaacacagttagaacactaaggagcacta Alignment from Pairagon TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGC-CACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtaaggacgtggactacaaattgaagattctttatccttcattttagTTTCACTATGAAAATACACGTGCTCATTTTTTTGTGGAGGATGCACACTACTGGTTCCACATTAAAAGGTGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtaagtagacaagggcctgtgaaacacagttagaacactaaggagcacta Alignment from Exonerate_protein2genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCC-ACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtaaggacgtggactacaaattgaagattctttatccttcattttagTTTCACTATGAAAATACACGTGCTCATTTTTTTGTGGAGGATGCACACTACTGGTTCCACATTAAAAGGTGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtaagtagacaagggcctgtgaaacacagttagaacactaaggagcacta Alignment from Exonerate_coding2genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCC-ACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtaaggacgtggactacaaattgaagattctttatccttcattttagTTTCACTATGAAAATACACGTGCTCATTTTTTTGTGGAGGATGCACACTACTGGTTCCACATTAAAAGGTGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtaagtagacaagggcctgtgaaacacagttagaacactaaggagcacta Alignment from GeneWise TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGAT-GCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtaaggacgtggactacaaattgaagattctttatccttcattttagTTTCACTATGAAAATACACGTGCTCATTTTTTTGTGGAGGATGCACACTACTGGTTCCACATTAAAAGGTGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtaagtagacaagggcctgtgaaacacagttagaacactaaggagcacta #### Nxf1_ID2346_6 --> 0 - 0 Original Alignment ATATCTATCATC-ATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG gttattacgctgtccccaattgtcttctagcccctcttctgcctctccagATATCGATCATCCATTAATGCATCTGCTCCACCCTACACTGTGCAGAATGAACTGAAGGCCGAACAAATAGAACAGCTCAAGgtgaatctggctccagtcacaaggccctcaacctccatcattgatggcta Alignment from CESAR ATATCTATCATC-ATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG gttattacgctgtccccaattgtcttctagcccctcttctgcctctccagATATCGATCATCCATTAATGCATCTGCTCCACCCTACACTGTGCAGAATGAACTGAAGGCCGAACAAATAGAACAGCTCAAGgtgaatctggctccagtcacaaggccctcaacctccatcattgatggcta Alignment from Spaln_aa2Genome ATATCTATCATC-ATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG gttattacgctgtccccaattgtcttctagcccctcttctgcctctccagATATCGATCATCcATTAATGCATCTGCTCCACCCTACACTGTGCAGAATGAACTGAAGGCCGAACAAATAGAACAGCTCAAGgtgaatctggctccagtcacaaggccctcaacctccatcattgatggcta Alignment from Spaln_nt2Genome ATATCTATCATC-ATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG gttattacgctgtccccaattgtcttctagcccctcttctgcctctccagATATCGATCATCCATTAATGCATCTGCTCCACCCTACACTGTGCAGAATGAACTGAAGGCCGAACAAATAGAACAGCTCAAGgtgaatctggctccagtcacaaggccctcaacctccatcattgatggcta Alignment from Pairagon ATATCTATCAT-CATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG gttattacgctgtccccaattgtcttctagcccctcttctgcctctccagATATCGATCATCCATTAATGCATCTGCTCCACCCTACACTGTGCAGAATGAACTGAAGGCCGAACAAATAGAACAGCTCAAGgtgaatctggctccagtcacaaggccctcaacctccatcattgatggcta Alignment from Exonerate_protein2genome ATATCTATCATC-ATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG gttattacgctgtccccaattgtcttctagcccctcttctgcctctccagATATCGATCATCCATTAATGCATCTGCTCCACCCTACACTGTGCAGAATGAACTGAAGGCCGAACAAATAGAACAGCTCAAGgtgaatctggctccagtcacaaggccctcaacctccatcattgatggcta Alignment from Exonerate_coding2genome ATATCTATCATC-ATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG gttattacgctgtccccaattgtcttctagcccctcttctgcctctccagATATCGATCATCCATTAATGCATCTGCTCCACCCTACACTGTGCAGAATGAACTGAAGGCCGAACAAATAGAACAGCTCAAGgtgaatctggctccagtcacaaggccctcaacctccatcattgatggcta Alignment from GeneWise ---------------------ATATCTATCATCATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG gttattacgctgtccccaattgtcttctagCCCCTCTTCTGCCTCTCCAGATATCGATCATCCATTAATGCATCTGCTCCACCCTACACTGTGCAGAATGAACTGAAGGCCGAACAAATAGAACAGCTCAAGgtgaatctggctccagtcacaaggccctcaacctccatcattgatggcta #### Nxf1_ID2349_9 --> 0 - 0 Original Alignment CTATTGTCTTTGAACTTGAGC-AGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA gcataaaatgaataggttaggatgagatatatcttttctttcctgtctagCTATTGTCTTTGAATTTGAGCCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTTTCTGGAAATGAAgtgagtctgacatctagggcactcttcttgttttaatagttgaccggcta Alignment from CESAR CTATTGTCTTTGAACTTGAGC-AGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA gcataaaatgaataggttaggatgagatatatcttttctttcctgtctagCTATTGTCTTTGAATTTGAGCCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTTTCTGGAAATGAAgtgagtctgacatctagggcactcttcttgttttaatagttgaccggcta Alignment from Spaln_aa2Genome CTATTGTCTTTGAACTTGAGC-AGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA gcataaaatgaataggttaggatgagatatatcttttctttcctgtctagCTATTGTCTTTGAATTTGAGCcAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTTTCTGGAAATGAAgtgagtctgacatctagggcactcttcttgttttaatagttgaccggcta Alignment from Spaln_nt2Genome CTATTGTCTTTGAACTTGAGC-AGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA gcataaaatgaataggttaggatgagatatatcttttctttcctgtctagCTATTGTCTTTGAATTTGAGCCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTTTCTGGAAATGAAgtgagtctgacatctagggcactcttcttgttttaatagttgaccggcta Alignment from Pairagon CTATTGTCTTTGAACTTGAG-CAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA gcataaaatgaataggttaggatgagatatatcttttctttcctgtctagCTATTGTCTTTGAATTTGAGCCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTTTCTGGAAATGAAgtgagtctgacatctagggcactcttcttgttttaatagttgaccggcta Alignment from Exonerate_protein2genome CTATTGTCTTTGAACTTGAGC-AGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA gcataaaatgaataggttaggatgagatatatcttttctttcctgtctagCTATTGTCTTTGAATTTGAGCCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTTTCTGGAAATGAAgtgagtctgacatctagggcactcttcttgttttaatagttgaccggcta Alignment from Exonerate_coding2genome CTATTGTCTTTGAACTTGAGC-AGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA gcataaaatgaataggttaggatgagatatatcttttctttcctgtctagCTATTGTCTTTGAATTTGAGCCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTTTCTGGAAATGAAgtgagtctgacatctagggcactcttcttgttttaatagttgaccggcta Alignment from GeneWise CTATTGTCTTTGAACTTG-AGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA gcataaaatgaataggttaggatgagatatatcttttctttcctgtctagCTATTGTCTTTGAATTTGAGCCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTTTCTGGAAATGAAgtgagtctgacatctagggcactcttcttgttttaatagttgaccggcta #### Nxf1_ID2355_15 --> 1 - 1 Original Alignment aAAAAACTTAGCT-GAATATGTCAAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCa gattacaggccactgttccaactactacagaacagtaatgtctgccacagaAAAAACTTAGCTCGAATATGTCAAAGACTGTAGAAATGTAAAGAAGCTTAAAGAACCCagtacgtgcattgtgtgagcaatccaggtgggagacaatcagtagagccag Alignment from CESAR aAAAAACTTAGCT-GAATATGTCAAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCa gattacaggccactgttccaactactacagaacagtaatgtctgccacagaAAAAACTTAGCTCGAATATGTCAAAGACTGTAGAAATGTAAAGAAGCTTAAAGAACCCagtacgtgcattgtgtgagcaatccaggtgggagacaatcagtagagccag Alignment from Spaln_aa2Genome AAAAAACTTAGCT-GAATATGTCAAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCA gattacaggccactgttccaactactacagaacagtaatgtctgccacagAAAAAACTTAGCTcGAATATGTCAAAGACTGTAGAAATGTAAAGAAGCTTAAAGAACCCAgtacgtgcattgtgtgagcaatccaggtgggagacaatcagtagagccag Alignment from Spaln_nt2Genome AAAAAACTTAGCT-GAATATGTCAAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCA gattacaggccactgttccaactactacagaacagtaatgtctgccacagAAAAAACTTAGCTCGAATATGTCAAAGACTGTAGAAATGTAAAGAAGCTTAAAGAACCCAgtacgtgcattgtgtgagcaatccaggtgggagacaatcagtagagccag Alignment from Pairagon AAAAAACTTAGCT-GAATATGTCAAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCA gattacaggccactgttccaactactacagaacagtaatgtctgccacagAAAAAACTTAGCTCGAATATGTCAAAGACTGTAGAAATGTAAAGAAGCTTAAAGAACCCAgtacgtgcattgtgtgagcaatccaggtgggagacaatcagtagagccag Alignment from Exonerate_protein2genome AAAAAACTTAGCT-GAATATGTCAAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCA gattacaggccactgttccaactactacagaacagtaatgtctgccacagAAAAAACTTAGCTCGAATATGTCAAAGACTGTAGAAATGTAAAGAAGCTTAAAGAACCCAgtacgtgcattgtgtgagcaatccaggtgggagacaatcagtagagccag Alignment from Exonerate_coding2genome AAAAAACTTAGCT-GAATATGTCAAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCA gattacaggccactgttccaactactacagaacagtaatgtctgccacagAAAAAACTTAGCTCGAATATGTCAAAGACTGTAGAAATGTAAAGAAGCTTAAAGAACCCAgtacgtgcattgtgtgagcaatccaggtgggagacaatcagtagagccag Alignment from GeneWise GTCCGAAAAAACTTAGCTGAATATGTCAAAGACAGCAGAAATGTGAAGAAGCTTAAAGAACCCA gattacaggccactgttccaactactacagaacagtaatgtctgccacagaaaaaacttagCTC---------------GAATATGTCAAAGACTGTAGAAATGTAAAGAAGCTTAAAGAACCCAgtacgtgcattgtgtgagcaatccaggtgggagacaatcagtagagccag #### Nxf1_ID2358_18 --> 2 - 2 Original Alignment tgGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCT-GCCAGCAATTCAgg tgcagcttaaatgactataaggagctggcttactgttttttgtttttcagtgGATGGGAAGTCTCGAGACTCTTTACATGCTTTTACAAGGACGTTCATTGCTGTTCCTCGCCAGCAATACCgggtatgtagttaacttattagattgagtactatcatcaatgtgctaggaag Alignment from CESAR tgGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCT-GCCAGCAATTCAgg tgcagcttaaatgactataaggagctggcttactgttttttgtttttcagtgGATGGGAAGTCTCGAGACTCTTTACATGCTTTTACAAGGACGTTCATTGCTGTTCCTCGCCAGCAATACCgggtatgtagttaacttattagattgagtactatcatcaatgtgctaggaag Alignment from Spaln_aa2Genome TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCT-GCCAGCAATTCAGG tgcagcttaaatgactataaggagctggcttactgttttttgtttttcagTGGATGGGAAGTCTCGAGACTCTTTACATGCTTTTACAAGGACGTTCATTGCTGTTCCTcGCCAGCAATACCGGgtatgtagttaacttattagattgagtactatcatcaatgtgctaggaag Alignment from Spaln_nt2Genome TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCT-GCCAGCAATTCAGG tgcagcttaaatgactataaggagctggcttactgttttttgtttttcagTGGATGGGAAGTCTCGAGACTCTTTACATGCTTTTACAAGGACGTTCATTGCTGTTCCTCGCCAGCAATACCGGgtatgtagttaacttattagattgagtactatcatcaatgtgctaggaag Alignment from Pairagon TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCT-GCCAGCAATTCAGG tgcagcttaaatgactataaggagctggcttactgttttttgtttttcagTGGATGGGAAGTCTCGAGACTCTTTACATGCTTTTACAAGGACGTTCATTGCTGTTCCTCGCCAGCAATACCGGgtatgtagttaacttattagattgagtactatcatcaatgtgctaggaag Alignment from Exonerate_protein2genome TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCT-GCCAGCAATTCAGG tgcagcttaaatgactataaggagctggcttactgttttttgtttttcagTGGATGGGAAGTCTCGAGACTCTTTACATGCTTTTACAAGGACGTTCATTGCTGTTCCTCGCCAGCAATACCGGgtatgtagttaacttattagattgagtactatcatcaatgtgctaggaag Alignment from Exonerate_coding2genome TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCT-GCCAGCAATTCAGG tgcagcttaaatgactataaggagctggcttactgttttttgtttttcagTGGATGGGAAGTCTCGAGACTCTTTACATGCTTTTACAAGGACGTTCATTGCTGTTCCTCGCCAGCAATACCGGgtatgtagttaacttattagattgagtactatcatcaatgtgctaggaag Alignment from GeneWise -------ACATTACTGTGTTTTTCTGTCAATGGAGTCTTCAAGGAAGTGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGAACGTTCATTGCTGTTCCT-GCCAGCAATTCAGG gagCTGGCTTACTGTTTTTTGTTTTTCA---------------------GTGGATGGGAAGTCTCGAGACTCTTTACATGCTTTTACAAGGACGTTCATTGCTGTTCCTCGCCAGCAATACCGGgtatgtagttaacttattagattgagtactatcatcaatgtgctaggaag #### Otub1_ID2061_5 --> 1 - 0 Original Alignment gTTCAAAGCCGTGTCTGCCAAGAGTAAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATT-GAAGACTTCCACAACACG tctgctatccaatgagcccacattggctccaacaatgtcactcatctcaggTTCAAAGCAGTGTCTGCCAAGAGTAAAGAAGACCTGGTATCCCAGGGCTTCACTGAGTTTACAATTCGAAGACTTCCACAACACAgtacaggagctcacccatatctggctgggttagtactgttgccatttctg Alignment from CESAR gTTCAAAGCCGTGTCTGCCAAGAGTAAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATT-GAAGACTTCCACAACACG tctgctatccaatgagcccacattggctccaacaatgtcactcatctcaggTTCAAAGCAGTGTCTGCCAAGAGTAAAGAAGACCTGGTATCCCAGGGCTTCACTGAGTTTACAATTCGAAGACTTCCACAACACAgtacaggagctcacccatatctggctgggttagtactgttgccatttctg Alignment from Spaln_aa2Genome GTTCAAAGCCGTGTCTGCCAAGAGTAAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATT-GAAGACTTCCACAACACG tctgctatccaatgagcccacattggctccaacaatgtcactcatctcagGTTCAAAGCAGTGTCTGCCAAGAGTAAAGAAGACCTGGTATCCCAGGGCTTCACTGAGTTTACAATTcGAAGACTTCCACAACACAgtacaggagctcacccatatctggctgggttagtactgttgccatttctg Alignment from Spaln_nt2Genome GTTCAAAGCCGTGTCTGCCAAGAGTAAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATT-GAAGACTTCCACAACACG tctgctatccaatgagcccacattggctccaacaatgtcactcatctcagGTTCAAAGCAGTGTCTGCCAAGAGTAAAGAAGACCTGGTATCCCAGGGCTTCACTGAGTTTACAATTCGAAGACTTCCACAACACAgtacaggagctcacccatatctggctgggttagtactgttgccatttctg Alignment from Pairagon GTTCAAAGCCGTGTCTGCCAAGAGTAAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATT-GAAGACTTCCACAACACG tctgctatccaatgagcccacattggctccaacaatgtcactcatctcagGTTCAAAGCAGTGTCTGCCAAGAGTAAAGAAGACCTGGTATCCCAGGGCTTCACTGAGTTTACAATTCGAAGACTTCCACAACACAgtacaggagctcacccatatctggctgggttagtactgttgccatttctg Alignment from Exonerate_protein2genome GTTCAAAGCCGTGTCTGCCAAGAGTAAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATT-GAAGACTTCCACAACACG tctgctatccaatgagcccacattggctccaacaatgtcactcatctcagGTTCAAAGCAGTGTCTGCCAAGAGTAAAGAAGACCTGGTATCCCAGGGCTTCACTGAGTTTACAATTCGAAGACTTCCACAACACAgtacaggagctcacccatatctggctgggttagtactgttgccatttctg Alignment from Exonerate_coding2genome GTTCAAAGCCGTGTCTGCCAAGAGTAAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATT-GAAGACTTCCACAACACG tctgctatccaatgagcccacattggctccaacaatgtcactcatctcagGTTCAAAGCAGTGTCTGCCAAGAGTAAAGAAGACCTGGTATCCCAGGGCTTCACTGAGTTTACAATTCGAAGACTTCCACAACACAgtacaggagctcacccatatctggctgggttagtactgttgccatttctg Alignment from GeneWise GTTCAAAGCCGTGTCTGCCAAGAGTAAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACA-ATTGAAGACTTCCACAACACG tctgctatccaatgagcccacattggctccaacaatgtcactcatctcagGTTCAAAGCAGTGTCTGCCAAGAGTAAAGAAGACCTGGTATCCCAGGGCTTCACTGAGTTTACAATTCGAAGACTTCCACAACACAgtacaggagctcacccatatctggctgggttagtactgttgccatttctg #### Pacs1_ID876_18 --> 2 - 2 Original Alignment agCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACA-CACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGtt ggctctctgaggaactataatactagaattgtcttctctccttcccacagagCCACTAGACGTGGTGGGTCGTGTGATGCAATATGTCAATGGAGCTATCACAACACCACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGttgtaagcctaacatcagcagctttctagaattgggtagattggaggaagtg Alignment from CESAR agCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACA-CACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGtt ggctctctgaggaactataatactagaattgtcttctctccttcccacagagCCACTAGACGTGGTGGGTCGTGTGATGCAATATGTCAATGGAGCTATCACAACACCACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGttgtaagcctaacatcagcagctttctagaattgggtagattggaggaagtg Alignment from Spaln_aa2Genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACA-CACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT ggctctctgaggaactataatactagaattgtcttctctccttcccacagAGCCACTAGACGTGGTGGGTCGTGTGATGCAATATGTCAATGGAGCTATCACAACAcCACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTTgtaagcctaacatcagcagctttctagaattgggtagattggaggaagtg Alignment from Spaln_nt2Genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACA-CACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT ggctctctgaggaactataatactagaattgtcttctctccttcccacagAGCCACTAGACGTGGTGGGTCGTGTGATGCAATATGTCAATGGAGCTATCACAACACCACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTTgtaagcctaacatcagcagctttctagaattgggtagattggaggaagtg Alignment from Pairagon AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACA-CACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT ggctctctgaggaactataatactagaattgtcttctctccttcccacagAGCCACTAGACGTGGTGGGTCGTGTGATGCAATATGTCAATGGAGCTATCACAACACCACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTTgtaagcctaacatcagcagctttctagaattgggtagattggaggaagtg Alignment from Exonerate_protein2genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACA-CACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT ggctctctgaggaactataatactagaattgtcttctctccttcccacagAGCCACTAGACGTGGTGGGTCGTGTGATGCAATATGTCAATGGAGCTATCACAACACCACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTTgtaagcctaacatcagcagctttctagaattgggtagattggaggaagtg Alignment from Exonerate_coding2genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACA-CACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT ggctctctgaggaactataatactagaattgtcttctctccttcccacagAGCCACTAGACGTGGTGGGTCGTGTGATGCAATATGTCAATGGAGCTATCACAACACCACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTTgtaagcctaacatcagcagctttctagaattgggtagattggaggaagtg Alignment from GeneWise AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACA-ACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT ggctctctgaggaactataatactagaattgtcttctctccttcccacagAGCCACTAGACGTGGTGGGTCGTGTGATGCAATATGTCAATGGAGCTATCACAACACCACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTTgtaagcctaacatcagcagctttctagaattgggtagattggaggaagtg #### Pacs1_ID888_6 --> 2 - 0 Original Alignment atCGCTCCCCAGATATTGACAACTACTCTGAAGAA-GAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG ttaggatagaccataccaggtcaaggtccctttacccttgttttctacagatCGCTCCCCAGACATTGATAACTACTCTGAAGAACGAGGAAGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGATGATCCATTGCATGGGCAGgtgggctcctgacagtggatgagtgagaggccctggggatttcccagtct Alignment from CESAR atCGCTCCCCAGATATTGACAACTACTCTGAAGAA-GAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG ttaggatagaccataccaggtcaaggtccctttacccttgttttctacagatCGCTCCCCAGACATTGATAACTACTCTGAAGAACGAGGAAGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGATGATCCATTGCATGGGCAGgtgggctcctgacagtggatgagtgagaggccctggggatttcccagtct Alignment from Spaln_aa2Genome ATCGCTCCCCAGATATTGACAACTACTCTGAAGAA-GAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG ttaggatagaccataccaggtcaaggtccctttacccttgttttctacagATCGCTCCCCAGACATTGATAACTACTCTGAAGAAcGAGGAAGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGATGATCCATTGCATGGGCAGgtgggctcctgacagtggatgagtgagaggccctggggatttcccagtct Alignment from Spaln_nt2Genome ATCGCTCCCCAGATATTGACAACTACTCTGAAGAA-GAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG ttaggatagaccataccaggtcaaggtccctttacccttgttttctacagATCGCTCCCCAGACATTGATAACTACTCTGAAGAACGAGGAAGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGATGATCCATTGCATGGGCAGgtgggctcctgacagtggatgagtgagaggccctggggatttcccagtct Alignment from Pairagon ATCGCTCCCCAGATATTGACAACTACTCTGAAGAA-GAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG ttaggatagaccataccaggtcaaggtccctttacccttgttttctacagATCGCTCCCCAGACATTGATAACTACTCTGAAGAACGAGGAAGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGATGATCCATTGCATGGGCAGgtgggctcctgacagtggatgagtgagaggccctggggatttcccagtct Alignment from Exonerate_protein2genome ATCGCTCCCCAGATATTGACAACTACTCTGAAGAA-GAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG ttaggatagaccataccaggtcaaggtccctttacccttgttttctacagATCGCTCCCCAGACATTGATAACTACTCTGAAGAACGAGGAAGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGATGATCCATTGCATGGGCAGgtgggctcctgacagtggatgagtgagaggccctggggatttcccagtct Alignment from Exonerate_coding2genome ATCGCTCCCCAGATATTGACAACTACTCTGAAGAA-GAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG ttaggatagaccataccaggtcaaggtccctttacccttgttttctacagATCGCTCCCCAGACATTGATAACTACTCTGAAGAACGAGGAAGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGATGATCCATTGCATGGGCAGgtgggctcctgacagtggatgagtgagaggccctggggatttcccagtct Alignment from GeneWise ATCGCTCCCCAGATATTGACAACTACTCTGAAGAA-GAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGACGACCCATTGCATGGGCAG ttaggatagaccataccaggtcaaggtccctttacccttgttttctacagATCGCTCCCCAGACATTGATAACTACTCTGAAGAACGAGGAAGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGATGATCCATTGCATGGGCAGgtgggctcctgacagtggatgagtgagaggccctggggatttcccagtct #### Papss2_ID6709_5 --> 2 - 0 Original Alignment ggTTTACAGGCATCGATTCTGACTATGAGAAACCTGAA-ACTCCAGAGTGTGTGCTGAAGACCAACCTGTCTTCAGTAAGCGACTGTGTGCAACAGGTGGTGGAACTTTTGCAGGAGCAG acagcattctcctagagacacagatctgtccttactttgtgtctctacagggTTTACAGGCACTGATTCTGACTATGAAAAACCTGAACACTCCAGAATGTGTGCTGAAGACTAACTTGTCTTCAGTGAGCGATTGTGTGCAGCAGGTGGTGGAACTTTTGCAAGAGCAGgtcagtgggtggttcctgccagtgtgttctggatgtgtgtgtgtgtgttt Alignment from CESAR ggTTTACAGGCATCGATTCTGACTATGAGAAACCTGAA-ACTCCAGAGTGTGTGCTGAAGACCAACCTGTCTTCAGTAAGCGACTGTGTGCAACAGGTGGTGGAACTTTTGCAGGAGCAG acagcattctcctagagacacagatctgtccttactttgtgtctctacagggTTTACAGGCACTGATTCTGACTATGAAAAACCTGAACACTCCAGAATGTGTGCTGAAGACTAACTTGTCTTCAGTGAGCGATTGTGTGCAGCAGGTGGTGGAACTTTTGCAAGAGCAGgtcagtgggtggttcctgccagtgtgttctggatgtgtgtgtgtgtgttt Alignment from Spaln_aa2Genome GGTTTACAGGCATCGATTCTGACTATGAGAAACCTGAA-ACTCCAGAGTGTGTGCTGAAGACCAACCTGTCTTCAGTAAGCGACTGTGTGCAACAGGTGGTGGAACTTTTGCAGGAGCAG acagcattctcctagagacacagatctgtccttactttgtgtctctacagGGTTTACAGGCACTGATTCTGACTATGAAAAACCTGAAcACTCCAGAATGTGTGCTGAAGACTAACTTGTCTTCAGTGAGCGATTGTGTGCAGCAGGTGGTGGAACTTTTGCAAGAGCAGgtcagtgggtggttcctgccagtgtgttctggatgtgtgtgtgtgtgttt Alignment from Spaln_nt2Genome GGTTTACAGGCATCGATTCTGACTATGAGAAACCTGAA-ACTCCAGAGTGTGTGCTGAAGACCAACCTGTCTTCAGTAAGCGACTGTGTGCAACAGGTGGTGGAACTTTTGCAGGAGCAG acagcattctcctagagacacagatctgtccttactttgtgtctctacagGGTTTACAGGCACTGATTCTGACTATGAAAAACCTGAACACTCCAGAATGTGTGCTGAAGACTAACTTGTCTTCAGTGAGCGATTGTGTGCAGCAGGTGGTGGAACTTTTGCAAGAGCAGgtcagtgggtggttcctgccagtgtgttctggatgtgtgtgtgtgtgttt Alignment from Pairagon GGTTTACAGGCATCGATTCTGACTATGAGAAACCTGAA-ACTCCAGAGTGTGTGCTGAAGACCAACCTGTCTTCAGTAAGCGACTGTGTGCAACAGGTGGTGGAACTTTTGCAGGAGCAG acagcattctcctagagacacagatctgtccttactttgtgtctctacagGGTTTACAGGCACTGATTCTGACTATGAAAAACCTGAACACTCCAGAATGTGTGCTGAAGACTAACTTGTCTTCAGTGAGCGATTGTGTGCAGCAGGTGGTGGAACTTTTGCAAGAGCAGgtcagtgggtggttcctgccagtgtgttctggatgtgtgtgtgtgtgttt Alignment from Exonerate_protein2genome GGTTTACAGGCATCGATTCTGACTATGAGAAACCTGAA-ACTCCAGAGTGTGTGCTGAAGACCAACCTGTCTTCAGTAAGCGACTGTGTGCAACAGGTGGTGGAACTTTTGCAGGAGCAG acagcattctcctagagacacagatctgtccttactttgtgtctctacagGGTTTACAGGCACTGATTCTGACTATGAAAAACCTGAACACTCCAGAATGTGTGCTGAAGACTAACTTGTCTTCAGTGAGCGATTGTGTGCAGCAGGTGGTGGAACTTTTGCAAGAGCAGgtcagtgggtggttcctgccagtgtgttctggatgtgtgtgtgtgtgttt Alignment from Exonerate_coding2genome GGTTTACAGGCATCGATTCTGACTATGAGAAACCTGAA-ACTCCAGAGTGTGTGCTGAAGACCAACCTGTCTTCAGTAAGCGACTGTGTGCAACAGGTGGTGGAACTTTTGCAGGAGCAG acagcattctcctagagacacagatctgtccttactttgtgtctctacagGGTTTACAGGCACTGATTCTGACTATGAAAAACCTGAACACTCCAGAATGTGTGCTGAAGACTAACTTGTCTTCAGTGAGCGATTGTGTGCAGCAGGTGGTGGAACTTTTGCAAGAGCAGgtcagtgggtggttcctgccagtgtgttctggatgtgtgtgtgtgtgttt Alignment from GeneWise GGTTTACAGGCATCGATTCTGACTATGAGAAACCTGAA-ACTCCAGAGTGTGTGCTGAAGACCAACCTGTCTTCAGTAAGCGACTGTGTGCAACAGGTGGTGGAACTTTTGCAGGAGCAG acagcattctcctagagacacagatctgtccttactttgtgtctctacagGGTTTACAGGCACTGATTCTGACTATGAAAAACCTGAACACTCCAGAATGTGTGCTGAAGACTAACTTGTCTTCAGTGAGCGATTGTGTGCAGCAGGTGGTGGAACTTTTGCAAGAGCAGgtcagtgggtggttcctgccagtgtgttctggatgtgtgtgtgtgtgttt #### Patl1_ID3316_4 --> 0 - 0 Original Alignment CCTCAACCAGGAAGTCTGAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCGT-GGACCACTACTTGCTCAG gtaggcgcaccattctagacacagtgtattggtgtttttaatgttttcagCCTCAACCAGGAAGTCTAAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGCATCCGTCGGACCACTACTTGCTCAGgtatgtaacattgtgttttatgcagaaagcttttgtattcattttgttcc Alignment from CESAR CCTCAACCAGGAAGTCTGAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCGT-GGACCACTACTTGCTCAG gtaggcgcaccattctagacacagtgtattggtgtttttaatgttttcagCCTCAACCAGGAAGTCTAAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGCATCCGTCGGACCACTACTTGCTCAGgtatgtaacattgtgttttatgcagaaagcttttgtattcattttgttcc Alignment from Spaln_aa2Genome CCTCAACCAGGAAGTCTGAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCGT-GGACCACTACTTGCTCAG gtaggcgcaccattctagacacagtgtattggtgtttttaatgttttcagCCTCAACCAGGAAGTCTAAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGCATCCGTcGGACCACTACTTGCTCAGgtatgtaacattgtgttttatgcagaaagcttttgtattcattttgttcc Alignment from Spaln_nt2Genome CCTCAACCAGGAAGTCTGAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCGT-GGACCACTACTTGCTCAG gtaggcgcaccattctagacacagtgtattggtgtttttaatgttttcagCCTCAACCAGGAAGTCTAAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGCATCCGTCGGACCACTACTTGCTCAGgtatgtaacattgtgttttatgcagaaagcttttgtattcattttgttcc Alignment from Pairagon CCTCAACCAGGAAGTCTGAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCGT-GGACCACTACTTGCTCAG gtaggcgcaccattctagacacagtgtattggtgtttttaatgttttcagCCTCAACCAGGAAGTCTAAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGCATCCGTCGGACCACTACTTGCTCAGgtatgtaacattgtgttttatgcagaaagcttttgtattcattttgttcc Alignment from Exonerate_protein2genome CCTCAACCAGGAAGTCTGAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCGT-GGACCACTACTTGCTCAG gtaggcgcaccattctagacacagtgtattggtgtttttaatgttttcagCCTCAACCAGGAAGTCTAAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGCATCCGTCGGACCACTACTTGCTCAGgtatgtaacattgtgttttatgcagaaagcttttgtattcattttgttcc Alignment from Exonerate_coding2genome CCTCAACCAGGAAGTCTGAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCGT-GGACCACTACTTGCTCAG gtaggcgcaccattctagacacagtgtattggtgtttttaatgttttcagCCTCAACCAGGAAGTCTAAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGCATCCGTCGGACCACTACTTGCTCAGgtatgtaacattgtgttttatgcagaaagcttttgtattcattttgttcc Alignment from GeneWise CCTCAACCAGGAAGTCTGAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGAATCC gtaggcgcaccattctagacacagtgtattggtgtttttaatgttttcagCCTCAACCAGGAAGTCTAAATTCCAGCATCTGGGATGGATCTGAAGTTCTGAGGCGCATCCgtcggaccactacttgctcaggtatgtaacattgtgttttatgcagaaagcttttgtattcattttgttcc #### Patl1_ID3333_18 --> 1 - 2 Original Alignment gACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTG-GCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGca tggtctccctccctttcccttctatttccttcttccctgtttctcccaaggACAGAGGTGATGTTCATGGCAACCCGAGAACTTGTTCGCATCCTCCAAGCTGCCCTTCTCCAATCCAATCTCTATCCCTACAAATCTAGTGTCTCTTTTTTCTCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGcagtaagttttgaacacatttcattaccttctcagacattgcaacacaggac Alignment from CESAR gACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTG-GCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGca tggtctccctccctttcccttctatttccttcttccctgtttctcccaaggACAGAGGTGATGTTCATGGCAACCCGAGAACTTGTTCGCATCCTCCAAGCTGCCCTTCTCCAATCCAATCTCTATCCCTACAAATCTAGTGTCTCTTTTTTCTCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGcagtaagttttgaacacatttcattaccttctcagacattgcaacacaggac Alignment from Spaln_aa2Genome GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTG-GCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCA tggtctccctccctttcccttctatttccttcttccctgtttctcccaagGACAGAGGTGATGTTCATGGCAACCCGAGAACTTGTTCGCATCCTCCAAGCTGCCCTTcTCCAATCCAATCTCTATCCCTACAAATCTAGTGTCTCTTTTTTCTCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGCAgtaagttttgaacacatttcattaccttctcagacattgcaacacaggac Alignment from Spaln_nt2Genome GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGG-CCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCA tggtctccctccctttcccttctatttccttcttccctgtttctcccaagGACAGAGGTGATGTTCATGGCAACCCGAGAACTTGTTCGCATCCTCCAAGCTGCCCTTCTCCAATCCAATCTCTATCCCTACAAATCTAGTGTCTCTTTTTTCTCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGCAgtaagttttgaacacatttcattaccttctcagacattgcaacacaggac Alignment from Pairagon GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCC-TGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCA tggtctccctccctttcccttctatttccttcttccctgtttctcccaagGACAGAGGTGATGTTCATGGCAACCCGAGAACTTGTTCGCATCCTCCAAGCTGCCCTTCTCCAATCCAATCTCTATCCCTACAAATCTAGTGTCTCTTTTTTCTCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGCAgtaagttttgaacacatttcattaccttctcagacattgcaacacaggac Alignment from Exonerate_protein2genome GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTG-GCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCA tggtctccctccctttcccttctatttccttcttccctgtttctcccaagGACAGAGGTGATGTTCATGGCAACCCGAGAACTTGTTCGCATCCTCCAAGCTGCCCTTCTCCAATCCAATCTCTATCCCTACAAATCTAGTGTCTCTTTTTTCTCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGCAgtaagttttgaacacatttcattaccttctcagacattgcaacacaggac Alignment from Exonerate_coding2genome GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTG-GCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAG tggtctccctccctttcccttctatttccttcttccctgtttctcccaagGACAGAGGTGATGTTCATGGCAACCCGAGAACTTGTTCGCATCCTCCAAGCTGCCCTTCTCCAATCCAATCTCTATCCCTACAAATCTAGTGTCTCTTTTTTCTCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGCAGtaagttttgaacacatttcattaccttctcagacattgcaacacaggac Alignment from GeneWise GACAGAGGTGATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTG-GCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAG tggtctccctccctttcccttctatttccttcttccctgtttctcccaagGACAGAGGTGATGTTCATGGCAACCCGAGAACTTGTTCGCATCCTCCAAGCTGCCCTTCTCCAATCCAATCTCTATCCCTACAAATCTAGTGTCTCTTTTTTCTCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGCAGtaagttttgaacacatttcattaccttctcagacattgcaacacaggac #### Pcnxl3_ID1159_34 --> 2 - 0 Original Alignment gcAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCC-AAAGGAGGCACCCCCAAATCTCAG tgcgtgagacagcacgccagctgccaagtacgtgtttatttcccccacaggcAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAAGTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCGGAAGGGACTGGGAGGAACTGATGGGGAGCCAGCCTCAGGGAGCCCCCAAAGGGGGTACCCCCAAATCTCAGgttggtagcctgtggaaaaaggcaaccccaggagctctcaggttggttca Alignment from CESAR gcAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGC-CCCAAAGGAGGCACCCCCAAATCTCAG tgcgtgagacagcacgccagctgccaagtacgtgtttatttcccccacaggcAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAAGTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCGGAAGGGACTGGGAGGAACTGATGGGGAGCCAGCCTCAGGGAGCCCCCAAAGGGGGTACCCCCAAATCTCAGgttggtagcctgtggaaaaaggcaaccccaggagctctcaggttggttca Alignment from Spaln_aa2Genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGC-CCCAAAGGAGGCACCCCCAAATCTCAG tgcgtgagacagcacgccagctgccaagtacgtgtttatttcccccacagGCAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAAGTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCGGAAGGGACTGGGAGGAACTGATGGGGAGCCAGCCTCAGGGAGCcCCCAAAGGGGGTACCCCCAAATCTCAGgttggtagcctgtggaaaaaggcaaccccaggagctctcaggttggttca Alignment from Spaln_nt2Genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCC-CAAAGGAGGCACCCCCAAATCTCAG tgcgtgagacagcacgccagctgccaagtacgtgtttatttcccccacagGCAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAAGTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCGGAAGGGACTGGGAGGAACTGATGGGGAGCCAGCCTCAGGGAGCCCCCAAAGGGGGTACCCCCAAATCTCAGgttggtagcctgtggaaaaaggcaaccccaggagctctcaggttggttca Alignment from Pairagon GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAG-CCCCAAAGGAGGCACCCCCAAATCTCAG tgcgtgagacagcacgccagctgccaagtacgtgtttatttcccccacagGCAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAAGTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCGGAAGGGACTGGGAGGAACTGATGGGGAGCCAGCCTCAGGGAGCCCCCAAAGGGGGTACCCCCAAATCTCAGgttggtagcctgtggaaaaaggcaaccccaggagctctcaggttggttca Alignment from Exonerate_protein2genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGC-CCCAAAGGAGGCACCCCCAAATCTCAG tgcgtgagacagcacgccagctgccaagtacgtgtttatttcccccacagGCAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAAGTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCGGAAGGGACTGGGAGGAACTGATGGGGAGCCAGCCTCAGGGAGCCCCCAAAGGGGGTACCCCCAAATCTCAGgttggtagcctgtggaaaaaggcaaccccaggagctctcaggttggttca Alignment from Exonerate_coding2genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGC-CCCAAAGGAGGCACCCCCAAATCTCAG tgcgtgagacagcacgccagctgccaagtacgtgtttatttcccccacagGCAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAAGTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCGGAAGGGACTGGGAGGAACTGATGGGGAGCCAGCCTCAGGGAGCCCCCAAAGGGGGTACCCCCAAATCTCAGgttggtagcctgtggaaaaaggcaaccccaggagctctcaggttggttca Alignment from GeneWise CAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGG-AGCCCCAAAGGAGGCACCCCCAAATCTCAG tgcgtgagacagcacgccagctgccaagtacgtgtttatttcccccacaggcagCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAAGTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCGGAAGGGACTGGGAGGAACTGATGGGGAGCCAGCCTCAGGGAGCCCCCAAAGGGGGTACCCCCAAATCTCAGgttggtagcctgtggaaaaaggcaaccccaggagctctcaggttggttca #### Pcnxl3_ID1160_33 --> 1 - 1 Original Alignment aCTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGC-CTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAg cacaatgcctcgccatgtacccctcatactgtctcctcttttgcctacagaCTCCATAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCAGATTGTGGTGGGGGTGGTGGCCCTGGCCTCCCTCAGCAATCATCCTCCCTTGGTGCATCCTACGCCTGAAAATGCAGCAggtgagtgcaaagcttaattgaaactatgcgtgagacagcacgccagctgc Alignment from CESAR aCTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGC-CTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAg cacaatgcctcgccatgtacccctcatactgtctcctcttttgcctacagaCTCCATAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCAGATTGTGGTGGGGGTGGTGGCCCTGGCCTCCCTCAGCAATCATCCTCCCTTGGTGCATCCTACGCCTGAAAATGCAGCAggtgagtgcaaagcttaattgaaactatgcgtgagacagcacgccagctgc Alignment from Spaln_aa2Genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGC-CTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG cacaatgcctcgccatgtacccctcatactgtctcctcttttgcctacagACTCCATAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCAGATTGTGGTGGGGGTGGTGGCcCTGGCCTCCCTCAGCAATCATCCTCCCTTGGTGCATCCTACGCCTGAAAATGCAGCAGgtgagtgcaaagcttaattgaaactatgcgtgagacagcacgccagctgc Alignment from Spaln_nt2Genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGG-CCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG cacaatgcctcgccatgtacccctcatactgtctcctcttttgcctacagACTCCATAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCAGATTGTGGTGGGGGTGGTGGCCCTGGCCTCCCTCAGCAATCATCCTCCCTTGGTGCATCCTACGCCTGAAAATGCAGCAGgtgagtgcaaagcttaattgaaactatgcgtgagacagcacgccagctgc Alignment from Pairagon ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGG-CCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG cacaatgcctcgccatgtacccctcatactgtctcctcttttgcctacagACTCCATAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCAGATTGTGGTGGGGGTGGTGGCCCTGGCCTCCCTCAGCAATCATCCTCCCTTGGTGCATCCTACGCCTGAAAATGCAGCAGgtgagtgcaaagcttaattgaaactatgcgtgagacagcacgccagctgc Alignment from Exonerate_protein2genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGC-CTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG cacaatgcctcgccatgtacccctcatactgtctcctcttttgcctacagACTCCATAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCAGATTGTGGTGGGGGTGGTGGCCCTGGCCTCCCTCAGCAATCATCCTCCCTTGGTGCATCCTACGCCTGAAAATGCAGCAGgtgagtgcaaagcttaattgaaactatgcgtgagacagcacgccagctgc Alignment from Exonerate_coding2genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGC-CTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG cacaatgcctcgccatgtacccctcatactgtctcctcttttgcctacagACTCCATAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCAGATTGTGGTGGGGGTGGTGGCCCTGGCCTCCCTCAGCAATCATCCTCCCTTGGTGCATCCTACGCCTGAAAATGCAGCAGgtgagtgcaaagcttaattgaaactatgcgtgagacagcacgccagctgc Alignment from GeneWise ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGC-CTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAGGCAG cacaatgcctcgccatgtacccctcatactgtctcctcttttgcctacagACTCCATAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATGTGGATGACTCAGATTGTGGTGGGGGTGGTGGCCCTGGCCTCCCTCAGCAATCATCCTCCCTTGGTGCATCCTACGCCTGAAAATGCAGCAGGTGAgtgcaaagcttaattgaaactatgcgtgagacagcacgccagctgc #### Pcnxl3_ID1167_26 --> 2 - 1 Original Alignment gcGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATC-ACCTTCCAGCTTCGTGGCCTTGAGTTCCGGg gagggtgctctctttacatgacatccaccattcggttccttcttttacaggaGCTGATGACAACAACCTCAACTTGATCTTTTATGAGCATCTGACACGCTCACTGCAGCACATGCTTTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGTCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAATGCACTCGTCCACCTCATTGAGGTTGGCAATGGCCTCATCCGCCTTCCAGCTTCGTGGCCTTAAGTTCCGGggtaaaacagcctgagatgggacactagtagggggcagagcacacaggcat Alignment from CESAR gcGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATC-ACCTTCCAGCTTCGTGGCCTTGAGTTCCGGg gagggtgctctctttacatgacatccaccattcggttccttcttttacaggaGCTGATGACAACAACCTCAACTTGATCTTTTATGAGCATCTGACACGCTCACTGCAGCACATGCTTTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGTCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAATGCACTCGTCCACCTCATTGAGGTTGGCAATGGCCTCATCCGCCTTCCAGCTTCGTGGCCTTAAGTTCCGGggtaaaacagcctgagatgggacactagtagggggcagagcacacaggcat Alignment from Spaln_aa2Genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATC-ACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG gagggtgctctctttacatgacatccaccattcggttccttcttttacagGAGCTGATGACAACAACCTCAACTTGATCTTTTATGAGCATCTGACACGCTCACTGCAGCACATGCTTTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGTCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAATGCACTCGTCCACCTCATTGAGGTTGGCAATGGCCTCATCcGCCTTCCAGCTTCGTGGCCTTAAGTTCCGGGgtaaaacagcctgagatgggacactagtagggggcagagcacacaggcat Alignment from Spaln_nt2Genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCA-CCTTCCAGCTTCGTGGCCTTGAGTTCCGGG gagggtgctctctttacatgacatccaccattcggttccttcttttacagGAGCTGATGACAACAACCTCAACTTGATCTTTTATGAGCATCTGACACGCTCACTGCAGCACATGCTTTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGTCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAATGCACTCGTCCACCTCATTGAGGTTGGCAATGGCCTCATCCGCCTTCCAGCTTCGTGGCCTTAAGTTCCGGGgtaaaacagcctgagatgggacactagtagggggcagagcacacaggcat Alignment from Pairagon GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCAT-CACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG gagggtgctctctttacatgacatccaccattcggttccttcttttacagGAGCTGATGACAACAACCTCAACTTGATCTTTTATGAGCATCTGACACGCTCACTGCAGCACATGCTTTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGTCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAATGCACTCGTCCACCTCATTGAGGTTGGCAATGGCCTCATCCGCCTTCCAGCTTCGTGGCCTTAAGTTCCGGGgtaaaacagcctgagatgggacactagtagggggcagagcacacaggcat Alignment from Exonerate_protein2genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATC-ACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG gagggtgctctctttacatgacatccaccattcggttccttcttttacagGAGCTGATGACAACAACCTCAACTTGATCTTTTATGAGCATCTGACACGCTCACTGCAGCACATGCTTTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGTCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAATGCACTCGTCCACCTCATTGAGGTTGGCAATGGCCTCATCCGCCTTCCAGCTTCGTGGCCTTAAGTTCCGGGgtaaaacagcctgagatgggacactagtagggggcagagcacacaggcat Alignment from Exonerate_coding2genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATC-ACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG gagggtgctctctttacatgacatccaccattcggttccttcttttacagGAGCTGATGACAACAACCTCAACTTGATCTTTTATGAGCATCTGACACGCTCACTGCAGCACATGCTTTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGTCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAATGCACTCGTCCACCTCATTGAGGTTGGCAATGGCCTCATCCGCCTTCCAGCTTCGTGGCCTTAAGTTCCGGGgtaaaacagcctgagatgggacactagtagggggcagagcacacaggcat Alignment from GeneWise GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATC-ACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG gagggtgctctctttacatgacatccaccattcggttccttcttttacagGAGCTGATGACAACAACCTCAACTTGATCTTTTATGAGCATCTGACACGCTCACTGCAGCACATGCTTTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGTCCTGGAGACTGCTTTGTCCTGGCCTCTGACTACCTCAATGCACTCGTCCACCTCATTGAGGTTGGCAATGGCCTCATCCGCCTTCCAGCTTCGTGGCCTTAAGTTCCGGGgtaaaacagcctgagatgggacactagtagggggcagagcacacaggcat #### Pcnxl3_ID1168_25 --> 1 - 1 Original Alignment cACTAAACGTGTGGACCATTCTAACACTCGC-CTAGTGACACAGCTGGACCGGAACCCAg gggttcagagaggaccacccagtgcatatcttccatttctctttgtgaagcACTAAACCTGTGGACCATTCTAACACTCGCCCTAGTGACACAGCTGGACCGGAACCCAggtatgttactacttgcctaggccttcacaggcaagttgccccctggaggg Alignment from CESAR cACTAAACGTGTGGACCATTCTAACACTCGC-CTAGTGACACAGCTGGACCGGAACCCAg gggttcagagaggaccacccagtgcatatcttccatttctctttgtgaagcACTAAACCTGTGGACCATTCTAACACTCGCCCTAGTGACACAGCTGGACCGGAACCCAggtatgttactacttgcctaggccttcacaggcaagttgccccctggaggg Alignment from Spaln_aa2Genome CACTAAACGTGTGGACCATTCTAACACTCGC-CTAGTGACACAGCTGGACCGGAACCCAG gggttcagagaggaccacccagtgcatatcttccatttctctttgtgaagCACTAAACCTGTGGACCATTCTAACACTCGCcCTAGTGACACAGCTGGACCGGAACCCAGgtatgttactacttgcctaggccttcacaggcaagttgccccctggaggg Alignment from Spaln_nt2Genome CACTAAACGTGTGGACCATTCTAACACTCG-CCTAGTGACACAGCTGGACCGGAACCCAG gggttcagagaggaccacccagtgcatatcttccatttctctttgtgaagCACTAAACCTGTGGACCATTCTAACACTCGCCCTAGTGACACAGCTGGACCGGAACCCAGgtatgttactacttgcctaggccttcacaggcaagttgccccctggaggg Alignment from Pairagon CACTAAACGTGTGGACCATTCTAACACTCG-CCTAGTGACACAGCTGGACCGGAACCCAG gggttcagagaggaccacccagtgcatatcttccatttctctttgtgaagCACTAAACCTGTGGACCATTCTAACACTCGCCCTAGTGACACAGCTGGACCGGAACCCAGgtatgttactacttgcctaggccttcacaggcaagttgccccctggaggg Alignment from Exonerate_protein2genome CACTAAACGTGTGGACCATTCTAACACTCGC-CTAGTGACACAGCTGGACCGGAACCCAG gggttcagagaggaccacccagtgcatatcttccatttctctttgtgaagCACTAAACCTGTGGACCATTCTAACACTCGCCCTAGTGACACAGCTGGACCGGAACCCAGgtatgttactacttgcctaggccttcacaggcaagttgccccctggaggg Alignment from Exonerate_coding2genome CACTAAACGTGTGGACCATTCTAACACTCGC-CTAGTGACACAGCTGGACCGGAACCCAG gggttcagagaggaccacccagtgcatatcttccatttctctttgtgaagCACTAAACCTGTGGACCATTCTAACACTCGCCCTAGTGACACAGCTGGACCGGAACCCAGgtatgttactacttgcctaggccttcacaggcaagttgccccctggaggg Alignment from GeneWise CACTAAACGTGTGGACCATTCTAACACTCGC-CTAGTGACACAGCTGGACCGGAACCCAG gggttcagagaggaccacccagtgcatatcttccatttctctttgtgaagCACTAAACCTGTGGACCATTCTAACACTCGCCCTAGTGACACAGCTGGACCGGAACCCAGgtatgttactacttgcctaggccttcacaggcaagttgccccctggaggg #### Pcnxl3_ID1169_24 --> 2 - 2 Original Alignment acTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTC-TTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACaa ctgcagaggagaggagagggaggcagactctcttccatgtctggctacagacTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTTCTTCTCTACCCCACTCAACCCCTTACTGGGCAGTGCAGTATTCATTATGTCCTACACAAGGCCCCTCAAGTTCTGGGAGAGGGACTACaagtatggctcaggggaggtaatgattaagagctgatgtcccagaggcctta Alignment from CESAR acTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTC-TTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACaa ctgcagaggagaggagagggaggcagactctcttccatgtctggctacagacTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTTCTTCTCTACCCCACTCAACCCCTTACTGGGCAGTGCAGTATTCATTATGTCCTACACAAGGCCCCTCAAGTTCTGGGAGAGGGACTACaagtatggctcaggggaggtaatgattaagagctgatgtcccagaggcctta Alignment from Spaln_aa2Genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTC-TTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ctgcagaggagaggagagggaggcagactctcttccatgtctggctacagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTTcTTCTCTACCCCACTCAACCCCTTACTGGGCAGTGCAGTATTCATTATGTCCTACACAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAAgtatggctcaggggaggtaatgattaagagctgatgtcccagaggcctta Alignment from Spaln_nt2Genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCA-GGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ctgcagaggagaggagagggaggcagactctcttccatgtctggctacagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTTCTTCTCTACCCCACTCAACCCCTTACTGGGCAGTGCAGTATTCATTATGTCCTACACAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAAgtatggctcaggggaggtaatgattaagagctgatgtcccagaggcctta Alignment from Pairagon ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGC-TCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ctgcagaggagaggagagggaggcagactctcttccatgtctggctacagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTTCTTCTCTACCCCACTCAACCCCTTACTGGGCAGTGCAGTATTCATTATGTCCTACACAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAAgtatggctcaggggaggtaatgattaagagctgatgtcccagaggcctta Alignment from Exonerate_protein2genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTC-TTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ctgcagaggagaggagagggaggcagactctcttccatgtctggctacagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTTCTTCTCTACCCCACTCAACCCCTTACTGGGCAGTGCAGTATTCATTATGTCCTACACAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAAgtatggctcaggggaggtaatgattaagagctgatgtcccagaggcctta Alignment from Exonerate_coding2genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTC-TTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ctgcagaggagaggagagggaggcagactctcttccatgtctggctacagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTTCTTCTCTACCCCACTCAACCCCTTACTGGGCAGTGCAGTATTCATTATGTCCTACACAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAAgtatggctcaggggaggtaatgattaagagctgatgtcccagaggcctta Alignment from GeneWise ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGG-CTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ctgcagaggagaggagagggaggcagactctcttccatgtctggctacagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTTCTTCTCTACCCCACTCAACCCCTTACTGGGCAGTGCAGTATTCATTATGTCCTACACAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAAgtatggctcaggggaggtaatgattaagagctgatgtcccagaggcctta #### Pcnxl3_ID1179_14 --> 0 - 1 Original Alignment GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCT-GCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTg ccccaaaggtcactggggaaggtccaaacagttgctgtttcattttccagGGTCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTGCTCATCTGGTTGCTGGACGCCCTTGGGACCGCTCAGCCCTTCCCACCTGTTTCTCTATATGGCCTCACGCTCTTCTCTCGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCCACTggtgagtcagggcaagatagacccaagggactgagtctgaaggctgggcct Alignment from CESAR GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCT-GCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTg ccccaaaggtcactggggaaggtccaaacagttgctgtttcattttccagGGTCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTGCTCATCTGGTTGCTGGACGCCCTTGGGACCGCTCAGCCCTTCCCACCTGTTTCTCTATATGGCCTCACGCTCTTCTCTCGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCCACTggtgagtcagggcaagatagacccaagggactgagtctgaaggctgggcct Alignment from Spaln_aa2Genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCT-GCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG ccccaaaggtcactggggaaggtccaaacagttgctgtttcattttccagGGTCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTGCTCATCTGGTTGCTGGACGCCCTTGGGACCGCTCAGCCCTTCCCACCTGTTTCTCTATATGGCCTCACGCTCTTCTCTcGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCCACTGgtgagtcagggcaagatagacccaagggactgagtctgaaggctgggcct Alignment from Spaln_nt2Genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCT-GCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG ccccaaaggtcactggggaaggtccaaacagttgctgtttcattttccagGGTCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTGCTCATCTGGTTGCTGGACGCCCTTGGGACCGCTCAGCCCTTCCCACCTGTTTCTCTATATGGCCTCACGCTCTTCTCTCGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCCACTGgtgagtcagggcaagatagacccaagggactgagtctgaaggctgggcct Alignment from Pairagon GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCT-GCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG ccccaaaggtcactggggaaggtccaaacagttgctgtttcattttccagGGTCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTGCTCATCTGGTTGCTGGACGCCCTTGGGACCGCTCAGCCCTTCCCACCTGTTTCTCTATATGGCCTCACGCTCTTCTCTCGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCCACTGgtgagtcagggcaagatagacccaagggactgagtctgaaggctgggcct Alignment from Exonerate_protein2genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCT-GCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG ccccaaaggtcactggggaaggtccaaacagttgctgtttcattttccagGGTCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTGCTCATCTGGTTGCTGGACGCCCTTGGGACCGCTCAGCCCTTCCCACCTGTTTCTCTATATGGCCTCACGCTCTTCTCTCGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCCACTGgtgagtcagggcaagatagacccaagggactgagtctgaaggctgggcct Alignment from Exonerate_coding2genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCT-GCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG ccccaaaggtcactggggaaggtccaaacagttgctgtttcattttccagGGTCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTGCTCATCTGGTTGCTGGACGCCCTTGGGACCGCTCAGCCCTTCCCACCTGTTTCTCTATATGGCCTCACGCTCTTCTCTCGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCCACTGgtgagtcagggcaagatagacccaagggactgagtctgaaggctgggcct Alignment from GeneWise GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTC-TCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG ccccaaaggtcactggggaaggtccaaacagttgctgtttcattttccagGGTCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTGCTCATCTGGTTGCTGGACGCCCTTGGGACCGCTCAGCCCTTCCCACCTGTTTCTCTATATGGCCTCACGCTCTTCTCTCGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCCACTGgtgagtcagggcaagatagacccaagggactgagtctgaaggctgggcct #### Pcnxl3_ID1186_7 --> 2 - 2 Original Alignment caCCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATG-GGCTCACCACCTag gcccaacccggcccagtttgtaacttattctttgcgtttctaaactacagcaCCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCGCAAGCTATCTGGAGACGACACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGCGGCTCACCACCTaggtaggtatctgtcccatggttccagtatagaaggggcaactgggcctcct Alignment from CESAR caCCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATG-GGCTCACCACCTag gcccaacccggcccagtttgtaacttattctttgcgtttctaaactacagcaCCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCGCAAGCTATCTGGAGACGACACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGCGGCTCACCACCTaggtaggtatctgtcccatggttccagtatagaaggggcaactgggcctcct Alignment from Spaln_aa2Genome CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATG-GGCTCACCACCTAG gcccaacccggcccagtttgtaacttattctttgcgtttctaaactacagCACCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCGCAAGCTATCTGGAGACGACACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGcGGCTCACCACCTAGgtaggtatctgtcccatggttccagtatagaaggggcaactgggcctcct Alignment from Spaln_nt2Genome CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATG-GGCTCACCACCTAG gcccaacccggcccagtttgtaacttattctttgcgtttctaaactacagCACCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCGCAAGCTATCTGGAGACGACACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGCGGCTCACCACCTAGgtaggtatctgtcccatggttccagtatagaaggggcaactgggcctcct Alignment from Pairagon CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATG-GGCTCACCACCTAG gcccaacccggcccagtttgtaacttattctttgcgtttctaaactacagCACCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCGCAAGCTATCTGGAGACGACACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGCGGCTCACCACCTAGgtaggtatctgtcccatggttccagtatagaaggggcaactgggcctcct Alignment from Exonerate_protein2genome CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATG-GGCTCACCACCTAG gcccaacccggcccagtttgtaacttattctttgcgtttctaaactacagCACCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCGCAAGCTATCTGGAGACGACACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGCGGCTCACCACCTAGgtaggtatctgtcccatggttccagtatagaaggggcaactgggcctcct Alignment from Exonerate_coding2genome CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATG-GGCTCACCACCTAG gcccaacccggcccagtttgtaacttattctttgcgtttctaaactacagCACCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCGCAAGCTATCTGGAGACGACACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGCGGCTCACCACCTAGgtaggtatctgtcccatggttccagtatagaaggggcaactgggcctcct Alignment from GeneWise CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTC-ATGGGCTCACCACCTAG gcccaacccggcccagtttgtaacttattctttgcgtttctaaactacagCACCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCGCAAGCTATCTGGAGACGACACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGCGGCTCACCACCTAGgtaggtatctgtcccatggttccagtatagaaggggcaactgggcctcct #### Pcnxl3_ID1189_4 --> 0 - 1 Original Alignment GAGTTGCTGCCCCGGATG-GAGGATTCTGGGCCCCTCAGAg tactcactccccctgcttgtttatttgttcagcttcatttttctttgcagGAGTTGCTGTCCCGGATGCGAGGATTCTGGGCCTCTCAGAggtgagctgctgctgttttcggcacagtggtggtggtgtggtgcaggacaa Alignment from CESAR GAGTTGCTGCCCCGGATG-GAGGATTCTGGGCCCCTCAGAg tactcactccccctgcttgtttatttgttcagcttcatttttctttgcagGAGTTGCTGTCCCGGATGCGAGGATTCTGGGCCTCTCAGAggtgagctgctgctgttttcggcacagtggtggtggtgtggtgcaggacaa Alignment from Spaln_aa2Genome GAGTTGCTGCCCCGGATG-GAGGATTCTGGGCCCCTCAGAG tactcactccccctgcttgtttatttgttcagcttcatttttctttgcagGAGTTGCTGTCCCGGATGcGAGGATTCTGGGCCTCTCAGAGgtgagctgctgctgttttcggcacagtggtggtggtgtggtgcaggacaa Alignment from Spaln_nt2Genome GAGTTGCTGCCCCGGATG-GAGGATTCTGGGCCCCTCAGAG tactcactccccctgcttgtttatttgttcagcttcatttttctttgcagGAGTTGCTGTCCCGGATGCGAGGATTCTGGGCCTCTCAGAGgtgagctgctgctgttttcggcacagtggtggtggtgtggtgcaggacaa Alignment from Pairagon GAGTTGCTGCCCCGGATG-GAGGATTCTGGGCCCCTCAGAG tactcactccccctgcttgtttatttgttcagcttcatttttctttgcagGAGTTGCTGTCCCGGATGCGAGGATTCTGGGCCTCTCAGAGgtgagctgctgctgttttcggcacagtggtggtggtgtggtgcaggacaa Alignment from Exonerate_protein2genome GAGTTGCTGCCCCGGATG-GAGGATTCTGGGCCCCTCAGAG tactcactccccctgcttgtttatttgttcagcttcatttttctttgcagGAGTTGCTGTCCCGGATGCGAGGATTCTGGGCCTCTCAGAGgtgagctgctgctgttttcggcacagtggtggtggtgtggtgcaggacaa Alignment from Exonerate_coding2genome tactcactccccctgcttgtttatttgttcagcttcatttttctttgcaggagttgctgtcccggatgcgaggattctgggcctctcagaggtgagctgctgctgttttcggcacagtggtggtggtgtggtgcaggacaa Alignment from GeneWise tactcactccccctgcttgtttatttgttcagcttcatttttctttgcaggagttgctgtcccggatgcgaggattctgggcctctcagaggtgagctgctgctgttttcggcacagtggtggtggtgtggtgcaggacaa #### Pcnxl3_ID1190_3 --> 1 - 0 Original Alignment gGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGC-TTCAACCAGGTTTCG caagaaggacctgtaaaggaacacaacttctggcatatttccttctccaggGATCCCGGTGTAGAGATGACAGTGTTCCAGAAGGTTAGCTCCTCACCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGATAGGCCTTCAACCATGTTTCAgtaagtaggctccccttgtcactggcataggagtcagccattggtgtggg Alignment from CESAR gGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGC-TTCAACCAGGTTTCG caagaaggacctgtaaaggaacacaacttctggcatatttccttctccaggGATCCCGGTGTAGAGATGACAGTGTTCCAGAAGGTTAGCTCCTCACCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGATAGGCCTTCAACCATGTTTCAgtaagtaggctccccttgtcactggcataggagtcagccattggtgtggg Alignment from Spaln_aa2Genome GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGC-TTCAACCAGGTTTCG caagaaggacctgtaaaggaacacaacttctggcatatttccttctccagGGATCCCGGTGTAGAGATGACAGTGTTCCAGAAGGTTAGCTCCTCACCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGATAGGCcTTCAACCATGTTTCAgtaagtaggctccccttgtcactggcataggagtcagccattggtgtggg Alignment from Spaln_nt2Genome GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGC-TTCAACCAGGTTTCG caagaaggacctgtaaaggaacacaacttctggcatatttccttctccagGGATCCCGGTGTAGAGATGACAGTGTTCCAGAAGGTTAGCTCCTCACCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGATAGGCCTTCAACCATGTTTCAgtaagtaggctccccttgtcactggcataggagtcagccattggtgtggg Alignment from Pairagon GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGG-CTTCAACCAGGTTTCG caagaaggacctgtaaaggaacacaacttctggcatatttccttctccagGGATCCCGGTGTAGAGATGACAGTGTTCCAGAAGGTTAGCTCCTCACCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGATAGGCCTTCAACCATGTTTCAgtaagtaggctccccttgtcactggcataggagtcagccattggtgtggg Alignment from Exonerate_protein2genome GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGC-TTCAACCAGGTTTCG caagaaggacctgtaaaggaacacaacttctggcatatttccttctccagGGATCCCGGTGTAGAGATGACAGTGTTCCAGAAGGTTAGCTCCTCACCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGATAGGCCTTCAACCATGTTTCAgtaagtaggctccccttgtcactggcataggagtcagccattggtgtggg Alignment from Exonerate_coding2genome GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGC-TTCAACCAGGTTTCG caagaaggacctgtaaaggaacacaacttctggcatatttccttctccagGGATCCCGGTGTAGAGATGACAGTGTTCCAGAAGGTTAGCTCCTCACCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGATAGGCCTTCAACCATGTTTCAgtaagtaggctccccttgtcactggcataggagtcagccattggtgtggg Alignment from GeneWise GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCGGAGTT caagaaggacctgtaaaggaacacaacttctggcatatttccttctccagGGATCCCGGTGTAGAGATGACAGTGTTCCAGAAGGTTAGCTCCTCACCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGATAGGCCTTCAACCATGTTTCAGTAAgtaggctccccttgtcactggcataggagtcagccattggtgtggg #### Pcx_ID553_3 --> 2 - 0 Original Alignment gtGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGT-ATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG gtgtttctctcgggacccagaagtctaactcccatcctgtcttccctcaggtGAAATTGCCATCCGAGTGTTTCGTGCATGCACAGAACTGGGTCATCCGCACAGTGGCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCGGATGAAGCCTACCTTCTTGGCCGTGGCCTGGCACCTGTTCAGGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtaagagatgccagggtttctgcaagccgggtaggatcttgttttacacc Alignment from CESAR gtGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGT-ATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG gtgtttctctcgggacccagaagtctaactcccatcctgtcttccctcaggtGAAATTGCCATCCGAGTGTTTCGTGCATGCACAGAACTGGGTCATCCGCACAGTGGCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCGGATGAAGCCTACCTTCTTGGCCGTGGCCTGGCACCTGTTCAGGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtaagagatgccagggtttctgcaagccgggtaggatcttgttttacacc Alignment from Spaln_aa2Genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGT-ATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG gtgtttctctcgggacccagaagtctaactcccatcctgtcttccctcagGTGAAATTGCCATCCGAGTGTTTCGTGCATGCACAGAACTGGGTcATCCGCACAGTGGCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCGGATGAAGCCTACCTTCTTGGCCGTGGCCTGGCACCTGTTCAGGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtaagagatgccagggtttctgcaagccgggtaggatcttgttttacacc Alignment from Spaln_nt2Genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCT-GGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG gtgtttctctcgggacccagaagtctaactcccatcctgtcttccctcagGTGAAATTGCCATCCGAGTGTTTCGTGCATGCACAGAACTGGGTCATCCGCACAGTGGCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCGGATGAAGCCTACCTTCTTGGCCGTGGCCTGGCACCTGTTCAGGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtaagagatgccagggtttctgcaagccgggtaggatcttgttttacacc Alignment from Pairagon GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGT-ATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG gtgtttctctcgggacccagaagtctaactcccatcctgtcttccctcagGTGAAATTGCCATCCGAGTGTTTCGTGCATGCACAGAACTGGGTCATCCGCACAGTGGCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCGGATGAAGCCTACCTTCTTGGCCGTGGCCTGGCACCTGTTCAGGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtaagagatgccagggtttctgcaagccgggtaggatcttgttttacacc Alignment from Exonerate_protein2genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGT-ATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG gtgtttctctcgggacccagaagtctaactcccatcctgtcttccctcagGTGAAATTGCCATCCGAGTGTTTCGTGCATGCACAGAACTGGGTCATCCGCACAGTGGCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCGGATGAAGCCTACCTTCTTGGCCGTGGCCTGGCACCTGTTCAGGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtaagagatgccagggtttctgcaagccgggtaggatcttgttttacacc Alignment from Exonerate_coding2genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGT-ATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG gtgtttctctcgggacccagaagtctaactcccatcctgtcttccctcagGTGAAATTGCCATCCGAGTGTTTCGTGCATGCACAGAACTGGGTCATCCGCACAGTGGCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCGGATGAAGCCTACCTTCTTGGCCGTGGCCTGGCACCTGTTCAGGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtaagagatgccagggtttctgcaagccgggtaggatcttgttttacacc Alignment from GeneWise GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGT-ATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG gtgtttctctcgggacccagaagtctaactcccatcctgtcttccctcagGTGAAATTGCCATCCGAGTGTTTCGTGCATGCACAGAACTGGGTCATCCGCACAGTGGCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCGGATGAAGCCTACCTTCTTGGCCGTGGCCTGGCACCTGTTCAGGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtaagagatgccagggtttctgcaagccgggtaggatcttgttttacacc #### Pcx_ID554_4 --> 0 - 1 Original Alignment GAAAATGGTGTAGATGCGGTG-CATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAg gaataatgagagagaggaacatgagctgaactttttttccctcaaaatagGAAAATGGTGTAGACGCAGTGCCATCCTGGCTATGGATTTCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATTGATGCAggtaagttaggaagccctcccctggcagggagagacagtctgggtattctg Alignment from CESAR GAAAATGGTGTAGATGCGGTG-CATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAg gaataatgagagagaggaacatgagctgaactttttttccctcaaaatagGAAAATGGTGTAGACGCAGTGCCATCCTGGCTATGGATTTCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATTGATGCAggtaagttaggaagccctcccctggcagggagagacagtctgggtattctg Alignment from Spaln_aa2Genome GAAAATGGTGTAGATGCGGTG-CATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaataatgagagagaggaacatgagctgaactttttttccctcaaaatagGAAAATGGTGTAGACGCAGTGcCATCCTGGCTATGGATTTCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATTGATGCAGgtaagttaggaagccctcccctggcagggagagacagtctgggtattctg Alignment from Spaln_nt2Genome GAAAATGGTGTAGATGCGGTGC-ATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaataatgagagagaggaacatgagctgaactttttttccctcaaaatagGAAAATGGTGTAGACGCAGTGCCATCCTGGCTATGGATTTCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATTGATGCAGgtaagttaggaagccctcccctggcagggagagacagtctgggtattctg Alignment from Pairagon GAAAATGGTGTAGATGCGGTG-CATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaataatgagagagaggaacatgagctgaactttttttccctcaaaatagGAAAATGGTGTAGACGCAGTGCCATCCTGGCTATGGATTTCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATTGATGCAGgtaagttaggaagccctcccctggcagggagagacagtctgggtattctg Alignment from Exonerate_protein2genome GAAAATGGTGTAGATGCGGTG-CATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaataatgagagagaggaacatgagctgaactttttttccctcaaaatagGAAAATGGTGTAGACGCAGTGCCATCCTGGCTATGGATTTCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATTGATGCAGgtaagttaggaagccctcccctggcagggagagacagtctgggtattctg Alignment from Exonerate_coding2genome GAAAATGGTGTAGA-----TGCGGTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gaataatgagagagaggaacatgagctgaactttttttccctcaaaatagGAAAATGGTGTAGACGCAGTGC----CATCCTGGCTATGGATTTCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATTGATGCAGgtaagttaggaagccctcccctggcagggagagacagtctgggtattctg Alignment from GeneWise GAAAATGGTGTAGATGCG-GTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCA--------------------------------------------------- gaataatgagagagaggaacatgagctgaactttttttccctcaaaatagGAAAATGGTGTAGACGCAGTGCCATCCTGGCTATGGATTTCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTTGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATTGATGCAGGTAAGTTAGGAAGCCCTCCCCTGGCAGGGAGAGACAGTCTGGGTATTCTG #### Pcx_ID556_6 --> 0 - 1 Original Alignment GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCAC-ATTGAGGTGCAGATCCTAg catggcacagagctggccgcatgcctgcatctgtccttctcttcgctcagGAGTTGGAAGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATCGAGCATTGTTTGTGGAGAAATTTATTGGGAAGCCAAGTCACCATTGAGGTGCAGATCCTAggtaagtggggaactgtttgaaacagcagaagcctacatcgccccaatcta Alignment from CESAR GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCAC-ATTGAGGTGCAGATCCTAg catggcacagagctggccgcatgcctgcatctgtccttctcttcgctcagGAGTTGGAAGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATCGAGCATTGTTTGTGGAGAAATTTATTGGGAAGCCAAGTCACCATTGAGGTGCAGATCCTAggtaagtggggaactgtttgaaacagcagaagcctacatcgccccaatcta Alignment from Spaln_aa2Genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCAC-ATTGAGGTGCAGATCCTAG catggcacagagctggccgcatgcctgcatctgtccttctcttcgctcagGAGTTGGAAGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATCGAGCATTGTTTGTGGAGAAATTTATTGGGAAGCCAAGTCACcATTGAGGTGCAGATCCTAGgtaagtggggaactgtttgaaacagcagaagcctacatcgccccaatcta Alignment from Spaln_nt2Genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCA-CATTGAGGTGCAGATCCTAG catggcacagagctggccgcatgcctgcatctgtccttctcttcgctcagGAGTTGGAAGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATCGAGCATTGTTTGTGGAGAAATTTATTGGGAAGCCAAGTCACCATTGAGGTGCAGATCCTAGgtaagtggggaactgtttgaaacagcagaagcctacatcgccccaatcta Alignment from Pairagon GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCA-CATTGAGGTGCAGATCCTAG catggcacagagctggccgcatgcctgcatctgtccttctcttcgctcagGAGTTGGAAGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATCGAGCATTGTTTGTGGAGAAATTTATTGGGAAGCCAAGTCACCATTGAGGTGCAGATCCTAGgtaagtggggaactgtttgaaacagcagaagcctacatcgccccaatcta Alignment from Exonerate_protein2genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCAC-ATTGAGGTGCAGATCCTAG catggcacagagctggccgcatgcctgcatctgtccttctcttcgctcagGAGTTGGAAGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATCGAGCATTGTTTGTGGAGAAATTTATTGGGAAGCCAAGTCACCATTGAGGTGCAGATCCTAGgtaagtggggaactgtttgaaacagcagaagcctacatcgccccaatcta Alignment from Exonerate_coding2genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCAC-ATTGAGGTGCAGATCCTAG catggcacagagctggccgcatgcctgcatctgtccttctcttcgctcagGAGTTGGAAGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATCGAGCATTGTTTGTGGAGAAATTTATTGGGAAGCCAAGTCACCATTGAGGTGCAGATCCTAGgtaagtggggaactgtttgaaacagcagaagcctacatcgccccaatcta Alignment from GeneWise GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCA- catggcacagagctggccgcatgcctgcatctgtccttctcttcgctcagGAGTTGGAAGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATCGAGCATTGTTTGTGGAGAAATTTATTGGGAAGCCAAgtcaccattgaggtgcagatcctaggtaagtggggaactgtttgaaacagcagaagcctacatcgccccaatcta #### Pcx_ID566_15 --> 0 - 1 Original Alignment GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCAT-ACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAg cacagcaggtccctcttgaccataattcacccacagttaatttcttatagGACATGGCGGGCCTGCTGAAGCCTGCTGCCTGCACCATGCTGGTCAGTTCCCTGTGGGACCGGTTCCCAGACCTCCCACTGCACATCCATCACCCATGATACGTCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGCGCACAAGCAGGGGCTGATGTTGTAGATGTGGTCGCAGTAGACTCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGTACCAAAGGGACTCCCTTGGACACAggtgaggcagaggaacgacttgacagaggaacgacttagggccaaaccgca Alignment from CESAR GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCAT-ACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAg cacagcaggtccctcttgaccataattcacccacagttaatttcttatagGACATGGCGGGCCTGCTGAAGCCTGCTGCCTGCACCATGCTGGTCAGTTCCCTGTGGGACCGGTTCCCAGACCTCCCACTGCACATCCATCACCCATGATACGTCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGCGCACAAGCAGGGGCTGATGTTGTAGATGTGGTCGCAGTAGACTCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGTACCAAAGGGACTCCCTTGGACACAggtgaggcagaggaacgacttgacagaggaacgacttagggccaaaccgca Alignment from Spaln_aa2Genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCAT-ACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG cacagcaggtccctcttgaccataattcacccacagttaatttcttatagGACATGGCGGGCCTGCTGAAGCCTGCTGCCTGCACCATGCTGGTCAGTTCCCTGTGGGACCGGTTCCCAGACCTCCCACTGCACATCCATcACCCATGATACGTCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGCGCACAAGCAGGGGCTGATGTTGTAGATGTGGTCGCAGTAGACTCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGTACCAAAGGGACTCCCTTGGACACAGgtgaggcagaggaacgacttgacagaggaacgacttagggccaaaccgca Alignment from Spaln_nt2Genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCAT-ACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG cacagcaggtccctcttgaccataattcacccacagttaatttcttatagGACATGGCGGGCCTGCTGAAGCCTGCTGCCTGCACCATGCTGGTCAGTTCCCTGTGGGACCGGTTCCCAGACCTCCCACTGCACATCCATCACCCATGATACGTCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGCGCACAAGCAGGGGCTGATGTTGTAGATGTGGTCGCAGTAGACTCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGTACCAAAGGGACTCCCTTGGACACAGgtgaggcagaggaacgacttgacagaggaacgacttagggccaaaccgca Alignment from Pairagon GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCAT-ACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG cacagcaggtccctcttgaccataattcacccacagttaatttcttatagGACATGGCGGGCCTGCTGAAGCCTGCTGCCTGCACCATGCTGGTCAGTTCCCTGTGGGACCGGTTCCCAGACCTCCCACTGCACATCCATCACCCATGATACGTCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGCGCACAAGCAGGGGCTGATGTTGTAGATGTGGTCGCAGTAGACTCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGTACCAAAGGGACTCCCTTGGACACAGgtgaggcagaggaacgacttgacagaggaacgacttagggccaaaccgca Alignment from Exonerate_protein2genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCAT-ACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG cacagcaggtccctcttgaccataattcacccacagttaatttcttatagGACATGGCGGGCCTGCTGAAGCCTGCTGCCTGCACCATGCTGGTCAGTTCCCTGTGGGACCGGTTCCCAGACCTCCCACTGCACATCCATCACCCATGATACGTCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGCGCACAAGCAGGGGCTGATGTTGTAGATGTGGTCGCAGTAGACTCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGTACCAAAGGGACTCCCTTGGACACAGgtgaggcagaggaacgacttgacagaggaacgacttagggccaaaccgca Alignment from Exonerate_coding2genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCAT-ACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG cacagcaggtccctcttgaccataattcacccacagttaatttcttatagGACATGGCGGGCCTGCTGAAGCCTGCTGCCTGCACCATGCTGGTCAGTTCCCTGTGGGACCGGTTCCCAGACCTCCCACTGCACATCCATCACCCATGATACGTCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGCGCACAAGCAGGGGCTGATGTTGTAGATGTGGTCGCAGTAGACTCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGTACCAAAGGGACTCCCTTGGACACAGgtgaggcagaggaacgacttgacagaggaacgacttagggccaaaccgca Alignment from GeneWise GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCAT-ACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG cacagcaggtccctcttgaccataattcacccacagttaatttcttatagGACATGGCGGGCCTGCTGAAGCCTGCTGCCTGCACCATGCTGGTCAGTTCCCTGTGGGACCGGTTCCCAGACCTCCCACTGCACATCCATCACCCATGATACGTCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGCGCACAAGCAGGGGCTGATGTTGTAGATGTGGTCGCAGTAGACTCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGTACCAAAGGGACTCCCTTGGACACAGgtgaggcagaggaacgacttgacagaggaacgacttagggccaaaccgca #### Pcx_ID570_19 --> 0 - 0 Original Alignment GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGAC-ACCCAGGCCATGAAG ggcctgtcaccaagacttaatctgcctcgttctgggctctttgtctatagGTTGAGCTGGAACGGGGCAAGACGCTGCACATTAAAGCTTTGGCCGTAAGCGACCTGAACCGCACTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTAGTCAAAGACCACCCAGGCCATGAAGgttagtttgaacctgagccagtcaggtggtaggcattggcttgatatgtt Alignment from CESAR GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGAC-ACCCAGGCCATGAAG ggcctgtcaccaagacttaatctgcctcgttctgggctctttgtctatagGTTGAGCTGGAACGGGGCAAGACGCTGCACATTAAAGCTTTGGCCGTAAGCGACCTGAACCGCACTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTAGTCAAAGACCACCCAGGCCATGAAGgttagtttgaacctgagccagtcaggtggtaggcattggcttgatatgtt Alignment from Spaln_aa2Genome GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGAC-ACCCAGGCCATGAAG ggcctgtcaccaagacttaatctgcctcgttctgggctctttgtctatagGTTGAGCTGGAACGGGGCAAGACGCTGCACATTAAAGCTTTGGCCGTAAGCGACCTGAACCGCACTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTAGTCAAAGACcACCCAGGCCATGAAGgttagtttgaacctgagccagtcaggtggtaggcattggcttgatatgtt Alignment from Spaln_nt2Genome GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGA-CACCCAGGCCATGAAG ggcctgtcaccaagacttaatctgcctcgttctgggctctttgtctatagGTTGAGCTGGAACGGGGCAAGACGCTGCACATTAAAGCTTTGGCCGTAAGCGACCTGAACCGCACTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTAGTCAAAGACCACCCAGGCCATGAAGgttagtttgaacctgagccagtcaggtggtaggcattggcttgatatgtt Alignment from Pairagon GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGA-CACCCAGGCCATGAAG ggcctgtcaccaagacttaatctgcctcgttctgggctctttgtctatagGTTGAGCTGGAACGGGGCAAGACGCTGCACATTAAAGCTTTGGCCGTAAGCGACCTGAACCGCACTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTAGTCAAAGACCACCCAGGCCATGAAGgttagtttgaacctgagccagtcaggtggtaggcattggcttgatatgtt Alignment from Exonerate_protein2genome GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGAC-ACCCAGGCCATGAAG ggcctgtcaccaagacttaatctgcctcgttctgggctctttgtctatagGTTGAGCTGGAACGGGGCAAGACGCTGCACATTAAAGCTTTGGCCGTAAGCGACCTGAACCGCACTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTAGTCAAAGACCACCCAGGCCATGAAGgttagtttgaacctgagccagtcaggtggtaggcattggcttgatatgtt Alignment from Exonerate_coding2genome GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGAC-ACCCAGGCCATGAAG ggcctgtcaccaagacttaatctgcctcgttctgggctctttgtctatagGTTGAGCTGGAACGGGGCAAGACGCTGCACATTAAAGCTTTGGCCGTAAGCGACCTGAACCGCACTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTAGTCAAAGACCACCCAGGCCATGAAGgttagtttgaacctgagccagtcaggtggtaggcattggcttgatatgtt Alignment from GeneWise GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGAC-ACCCAGGCCATGAAG ggcctgtcaccaagacttaatctgcctcgttctgggctctttgtctatagGTTGAGCTGGAACGGGGCAAGACGCTGCACATTAAAGCTTTGGCCGTAAGCGACCTGAACCGCACTGGCCAGAGGCAGGTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTAGTCAAAGACCACCCAGGCCATGAAGgttagtttgaacctgagccagtcaggtggtaggcattggcttgatatgtt #### Pdcd11_ID10134_28 --> 1 - 0 Original Alignment cGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCC-AGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG gtgtgcagacaccacttctgccccatcttgatgggtagctgccaccccagcGTGAATCCCATGAAGAACCTGATAGAGCTGTCACTCCTTCCCCAGTGACACTGGGAGGCCAGATGTATTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGAGGGCCAAAAAAGGAAGGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGGCATGAGTCTGAGAGTGAGCAGgcaagtacccctccctgggcagcattgcctcatctcacccatcagtgtag Alignment from CESAR cGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCC-AGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG gtgtgcagacaccacttctgccccatcttgatgggtagctgccaccccagcGTGAATCCCATGAAGAACCTGATAGAGCTGTCACTCCTTCCCCAGTGACACTGGGAGGCCAGATGTATTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGAGGGCCAAAAAAGGAAGGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGGCATGAGTCTGAGAGTGAGCAGgcaagtacccctccctgggcagcattgcctcatctcacccatcagtgtag Alignment from Spaln_aa2Genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTT-CCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG gtgtgcagacaccacttctgccccatcttgatgggtagctgccaccccagCGTGAATCCCATGAAGAACCTGATAGAGCTGTCACTCCTTcCCCAGTGACACTGGGAGGCCAGATGTATTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGAGGGCCAAAAAAGGAAGGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGGCATGAGTCTGAGAGTGAGCAGgcaagtacccctccctgggcagcattgcctcatctcacccatcagtgtag Alignment from Spaln_nt2Genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTT-CCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG gtgtgcagacaccacttctgccccatcttgatgggtagctgccaccccagCGTGAATCCCATGAAGAACCTGATAGAGCTGTCACTCCTTCCCCAGTGACACTGGGAGGCCAGATGTATTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGAGGGCCAAAAAAGGAAGGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGGCATGAGTCTGAGAGTGAGCAGgcaagtacccctccctgggcagcattgcctcatctcacccatcagtgtag Alignment from Pairagon CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTT-CCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG gtgtgcagacaccacttctgccccatcttgatgggtagctgccaccccagCGTGAATCCCATGAAGAACCTGATAGAGCTGTCACTCCTTCCCCAGTGACACTGGGAGGCCAGATGTATTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGAGGGCCAAAAAAGGAAGGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGGCATGAGTCTGAGAGTGAGCAGgcaagtacccctccctgggcagcattgcctcatctcacccatcagtgtag Alignment from Exonerate_protein2genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTT-CCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG gtgtgcagacaccacttctgccccatcttgatgggtagctgccaccccagCGTGAATCCCATGAAGAACCTGATAGAGCTGTCACTCCTTCCCCAGTGACACTGGGAGGCCAGATGTATTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGAGGGCCAAAAAAGGAAGGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGGCATGAGTCTGAGAGTGAGCAGgcaagtacccctccctgggcagcattgcctcatctcacccatcagtgtag Alignment from Exonerate_coding2genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTT-CCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG gtgtgcagacaccacttctgccccatcttgatgggtagctgccaccccagCGTGAATCCCATGAAGAACCTGATAGAGCTGTCACTCCTTCCCCAGTGACACTGGGAGGCCAGATGTATTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGAGGGCCAAAAAAGGAAGGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGGCATGAGTCTGAGAGTGAGCAGgcaagtacccctccctgggcagcattgcctcatctcacccatcagtgtag Alignment from GeneWise CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCC-AGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAGGAACTAG gtgtgcagacaccacttctgccccatcttgatgggtagctgccaccccagCGTGAATCCCATGAAGAACCTGATAGAGCTGTCACTCCTTCCCCAGTGACACTGGGAGGCCAGATGTATTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGAGGGCCAAAAAAGGAAGGAGAAGAACCAGAAGAGACGGGACGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGGCATGAGTCTGAGAGTGAGCAG---GCAAgtacccctccctgggcagcattgcctcatctcacccatcagtg #### Pdcd11_ID10136_30 --> 0 - 0 Original Alignment GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTT-GACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtggggtcagaacaacctaacacatttcttcacgttcgtcttagGGGAAGAAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTCGACTCTCTGACCCCAGCCTTGCCACTCCGGGAAGAAAGCTCAGACAGCGAGGATGAGCAGCCACACCAAGCTAAGgtgagctgtgttccaatacactgcagctcttgcagaaacgcttattacca Alignment from CESAR GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTT-GACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtggggtcagaacaacctaacacatttcttcacgttcgtcttagGGGAAGAAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTCGACTCTCTGACCCCAGCCTTGCCACTCCGGGAAGAAAGCTCAGACAGCGAGGATGAGCAGCCACACCAAGCTAAGgtgagctgtgttccaatacactgcagctcttgcagaaacgcttattacca Alignment from Spaln_aa2Genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTT-GACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtggggtcagaacaacctaacacatttcttcacgttcgtcttagGGGAAGAAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTcGACTCTCTGACCCCAGCCTTGCCACTCCGGGAAGAAAGCTCAGACAGCGAGGATGAGCAGCCACACCAAGCTAAGgtgagctgtgttccaatacactgcagctcttgcagaaacgcttattacca Alignment from Spaln_nt2Genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGT-GGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtggggtcagaacaacctaacacatttcttcacgttcgtcttagGGGAAGAAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTCGACTCTCTGACCCCAGCCTTGCCACTCCGGGAAGAAAGCTCAGACAGCGAGGATGAGCAGCCACACCAAGCTAAGgtgagctgtgttccaatacactgcagctcttgcagaaacgcttattacca Alignment from Pairagon GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTT-GACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtggggtcagaacaacctaacacatttcttcacgttcgtcttagGGGAAGAAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTCGACTCTCTGACCCCAGCCTTGCCACTCCGGGAAGAAAGCTCAGACAGCGAGGATGAGCAGCCACACCAAGCTAAGgtgagctgtgttccaatacactgcagctcttgcagaaacgcttattacca Alignment from Exonerate_protein2genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTT-GACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtggggtcagaacaacctaacacatttcttcacgttcgtcttagGGGAAGAAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTCGACTCTCTGACCCCAGCCTTGCCACTCCGGGAAGAAAGCTCAGACAGCGAGGATGAGCAGCCACACCAAGCTAAGgtgagctgtgttccaatacactgcagctcttgcagaaacgcttattacca Alignment from Exonerate_coding2genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTT-GACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtggggtcagaacaacctaacacatttcttcacgttcgtcttagGGGAAGAAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTCGACTCTCTGACCCCAGCCTTGCCACTCCGGGAAGAAAGCTCAGACAGCGAGGATGAGCAGCCACACCAAGCTAAGgtgagctgtgttccaatacactgcagctcttgcagaaacgcttattacca Alignment from GeneWise GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGG-CTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtggggtcagaacaacctaacacatttcttcacgttcgtcttagGGGAAGAAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTCTCTTCAGGCTTCCTTTGGGATGTGGGGCTTCGACTCTCTGACCCCAGCCTTGCCACTCCGGGAAGAAAGCTCAGACAGCGAGGATGAGCAGCCACACCAAGCTAAGgtgagctgtgttccaatacactgcagctcttgcagaaacgcttattacca #### Pdcd11_ID10139_33 --> 0 - 1 Original Alignment GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATC-AAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGG------GCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAc tacttcatcgacgtagtgctacactctagactctgagactttttcctcagGAAGCTGGAGAGCTGTACAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGCATCCAAATATGGTGCCTTTGTTTTGGGAAGGAGTCAGGCTGGGGCTGGAGTCAGTCACCGAGTCCTGCAGCGAGCCCTGGAGTGCTTGCCGGCCAAAGAAcgtacgggcttttcctggcacctgatcccactcagattgatagatatttag Alignment from CESAR GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATC-AAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAc tacttcatcgacgtagtgctacactctagactctgagactttttcctcagGAAGCTGGAGAGCTGTACAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGCATCCAAATATGGTGCCTTTGTTTTGGGAAGGAGTCAGGCTGGGGCTGGAGTCAGTCACCGAGTCCTGCAGCGAGCCCTGGAGTGCTTGCCGGCCAAAGAAcgtacgggcttttcctggcacctgatcccactcagattgatagatatttag Alignment from Spaln_aa2Genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATC-AAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC tacttcatcgacgtagtgctacactctagactctgagactttttcctcagGAAGCTGGAGAGCTGTACAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGCATCcAAATATGGTGCCTTTGTTTTGGGAAGGAGTCAGGCTGGGGCTGGAGTCAGTCACCGAGTCCTGCAGCGAGCCCTGGAGTGCTTGCCGGCCAAAGAACgtacgggcttttcctggcacctgatcccactcagattgatagatatttag Alignment from Spaln_nt2Genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGAT-CAAATATGGTGCCTTTGTTTTGGGGAGGAGTCA------GGCTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC tacttcatcgacgtagtgctacactctagactctgagactttttcctcagGAAGCTGGAGAGCTGTACAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGCATCCAAATATGGTGCCTTTGTTTTGGGAAGGAGTCAGGCTGGGGCTGGAGTCAGTCACCGAGTCCTGCAGCGAGCCCTGGAGTGCTTGCCGGCCAAAGAACgtacgggcttttcctggcacctgatcccactcagattgatagatatttag Alignment from Pairagon GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGAT-CAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGC------CAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC tacttcatcgacgtagtgctacactctagactctgagactttttcctcagGAAGCTGGAGAGCTGTACAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGCATCCAAATATGGTGCCTTTGTTTTGGGAAGGAGTCAGGCTGGGGCTGGAGTCAGTCACCGAGTCCTGCAGCGAGCCCTGGAGTGCTTGCCGGCCAAAGAACgtacgggcttttcctggcacctgatcccactcagattgatagatatttag Alignment from Exonerate_protein2genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATC-AAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC tacttcatcgacgtagtgctacactctagactctgagactttttcctcagGAAGCTGGAGAGCTGTACAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGCATCCAAATATGGTGCCTTTGTTTTGGGAAGGAGTCAGGCTGGGGCTGGAGTCAGTCACCGAGTCCTGCAGCGAGCCCTGGAGTGCTTGCCGGCCAAAGAACgtacgggcttttcctggcacctgatcccactcagattgatagatatttag Alignment from Exonerate_coding2genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATC-AAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC tacttcatcgacgtagtgctacactctagactctgagactttttcctcagGAAGCTGGAGAGCTGTACAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGCATCCAAATATGGTGCCTTTGTTTTGGGAAGGAGTCAGGCTGGGGCTGGAGTCAGTCACCGAGTCCTGCAGCGAGCCCTGGAGTGCTTGCCGGCCAAAGAACgtacgggcttttcctggcacctgatcccactcagattgatagatatttag Alignment from GeneWise GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTC-TGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC tacttcatcgacgtagtgctacactctagactctgagactttttcctcagGAAGCTGGAGAGCTGTACAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGCATCCAAATATGGTGCCTTTGTTTTGGGAAGGAGTCAGGCTGGGGCTGGAGTCAGTCACCGAGTCCTGCAGCGAGCCCTGGAGTGCTTGCCGGCCAAAGAACgtacgggcttttcctggcacctgatcccactcagattgatagatatttag #### Pdcd4_ID11402_9 --> 0 - 0 Original Alignment GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAG-ATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA gataagttgtttaccaaaagtttacttatgcttctgcctgctgattttagGCCATTGTGATGGTGTTAGAGTCAACTGGAGAGAGTGCATTCAAGCATGATCTTAGATTTATTTAAATCCCTGTGGAAGTCTTCTACGATCACCATAGACCAAATGAAACGAgtgagtatgacattatttcgaatgtttataaaaggtctatgtctattcta Alignment from CESAR GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAG-ATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA gataagttgtttaccaaaagtttacttatgcttctgcctgctgattttagGCCATTGTGATGGTGTTAGAGTCAACTGGAGAGAGTGCATTCAAGCATGATCTTAGATTTATTTAAATCCCTGTGGAAGTCTTCTACGATCACCATAGACCAAATGAAACGAgtgagtatgacattatttcgaatgtttataaaaggtctatgtctattcta Alignment from Spaln_aa2Genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAG-ATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA gataagttgtttaccaaaagtttacttatgcttctgcctgctgattttagGCCATTGTGATGGTGTTAGAGTCAACTGGAGAGAGTGCATTCAAGcATGATCTTAGATTTATTTAAATCCCTGTGGAAGTCTTCTACGATCACCATAGACCAAATGAAACGAgtgagtatgacattatttcgaatgtttataaaaggtctatgtctattcta Alignment from Spaln_nt2Genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAG-ATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA gataagttgtttaccaaaagtttacttatgcttctgcctgctgattttagGCCATTGTGATGGTGTTAGAGTCAACTGGAGAGAGTGCATTCAAGCATGATCTTAGATTTATTTAAATCCCTGTGGAAGTCTTCTACGATCACCATAGACCAAATGAAACGAgtgagtatgacattatttcgaatgtttataaaaggtctatgtctattcta Alignment from Pairagon GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAG-ATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA gataagttgtttaccaaaagtttacttatgcttctgcctgctgattttagGCCATTGTGATGGTGTTAGAGTCAACTGGAGAGAGTGCATTCAAGCATGATCTTAGATTTATTTAAATCCCTGTGGAAGTCTTCTACGATCACCATAGACCAAATGAAACGAgtgagtatgacattatttcgaatgtttataaaaggtctatgtctattcta Alignment from Exonerate_protein2genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAG-ATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA gataagttgtttaccaaaagtttacttatgcttctgcctgctgattttagGCCATTGTGATGGTGTTAGAGTCAACTGGAGAGAGTGCATTCAAGCATGATCTTAGATTTATTTAAATCCCTGTGGAAGTCTTCTACGATCACCATAGACCAAATGAAACGAgtgagtatgacattatttcgaatgtttataaaaggtctatgtctattcta Alignment from Exonerate_coding2genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAG-ATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA gataagttgtttaccaaaagtttacttatgcttctgcctgctgattttagGCCATTGTGATGGTGTTAGAGTCAACTGGAGAGAGTGCATTCAAGCATGATCTTAGATTTATTTAAATCCCTGTGGAAGTCTTCTACGATCACCATAGACCAAATGAAACGAgtgagtatgacattatttcgaatgtttataaaaggtctatgtctattcta Alignment from GeneWise GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTC-AAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA gataagttgtttaccaaaagtttacttatgcttctgcctgctgattttagGCCATTGTGATGGTGTTAGAGTCAACTGGAGAGAGTGCATTCAAGCATGATCTTAGATTTATTTAAATCCCTGTGGAAGTCTTCTACGATCACCATAGACCAAATGAAACGAgtgagtatgacattatttcgaatgtttataaaaggtctatgtctattcta #### Pde6c_ID7533_3 --> 0 - 0 Original Alignment GTCTTTTCTAAGTACCTCAGCTTTGTT-GCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactgttcacccccctttctccatagGTCTTCTCTAAGTACCTCAGCTTTGTTCGCTGTCGCACTAAGGCTGAAGCACACCAGTTATCTGTACAGTGTGGAGTCCCGGAGAAGCCAGgtgaggaaacagctaccagtagtctccccttgccaccccaaaacagcagc Alignment from CESAR GTCTTTTCTAAGTACCTCAGCTTTGTT-GCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactgttcacccccctttctccatagGTCTTCTCTAAGTACCTCAGCTTTGTTCGCTGTCGCACTAAGGCTGAAGCACACCAGTTATCTGTACAGTGTGGAGTCCCGGAGAAGCCAGgtgaggaaacagctaccagtagtctccccttgccaccccaaaacagcagc Alignment from Spaln_aa2Genome GTCTTTTCTAAGTACCTCAGCTTTGTT-GCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactgttcacccccctttctccatagGTCTTCTCTAAGTACCTCAGCTTTGTTcGCTGTCGCACTAAGGCTGAAGCACACCAGTTATCTGTACAGTGTGGAGTCCCGGAGAAGCCAGgtgaggaaacagctaccagtagtctccccttgccaccccaaaacagcagc Alignment from Spaln_nt2Genome GTCTTTTCTAAGTACCTCAGC-TTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactgttcacccccctttctccatagGTCTTCTCTAAGTACCTCAGCTTTGTTCGCTGTCGCACTAAGGCTGAAGCACACCAGTTATCTGTACAGTGTGGAGTCCCGGAGAAGCCAGgtgaggaaacagctaccagtagtctccccttgccaccccaaaacagcagc Alignment from Pairagon GTCTTTTCTAAGTACCTCAGCTTTGTT-GCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactgttcacccccctttctccatagGTCTTCTCTAAGTACCTCAGCTTTGTTCGCTGTCGCACTAAGGCTGAAGCACACCAGTTATCTGTACAGTGTGGAGTCCCGGAGAAGCCAGgtgaggaaacagctaccagtagtctccccttgccaccccaaaacagcagc Alignment from Exonerate_protein2genome GTCTTTTCTAAGTACCTCAGCTTTGTT-GCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactgttcacccccctttctccatagGTCTTCTCTAAGTACCTCAGCTTTGTTCGCTGTCGCACTAAGGCTGAAGCACACCAGTTATCTGTACAGTGTGGAGTCCCGGAGAAGCCAGgtgaggaaacagctaccagtagtctccccttgccaccccaaaacagcagc Alignment from Exonerate_coding2genome GTCTTTTCTAAGTACCTCAGCTTTGTT-GCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactgttcacccccctttctccatagGTCTTCTCTAAGTACCTCAGCTTTGTTCGCTGTCGCACTAAGGCTGAAGCACACCAGTTATCTGTACAGTGTGGAGTCCCGGAGAAGCCAGgtgaggaaacagctaccagtagtctccccttgccaccccaaaacagcagc Alignment from GeneWise GTCTTTTCTAAGTACCTCAGCTTTGTT-GCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAGTCCCGGAGAAGCCAG aacaagcaaagggttcacaacaataactgttcacccccctttctccatagGTCTTCTCTAAGTACCTCAGCTTTGTTCGCTGTCGCACTAAGGCTGAAGCACACCAGTTATCTGTACAGTGTGGAGTCCCGGAGAAGCCAGgtgaggaaacagctaccagtagtctccccttgccaccccaaaacagcagc #### Pde6c_ID7536_6 --> 0 - 2 Original Alignment GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAA-GAGATCAACGTGATTcc ataccttctctgcaaattaatattgcgtgcagttttctttttcattgcagGAAATCATATTCTACAAAATTACTGATTACATTTTACATGGCAAAGAACGAAATCAATGTGATTccgcaagtgttccctggaagcagccacatgagttgcctctgggactttgact Alignment from CESAR GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAA-GAGATCAACGTGATTcc ataccttctctgcaaattaatattgcgtgcagttttctttttcattgcagGAAATCATATTCTACAAAATTACTGATTACATTTTACATGGCAAAGAACGAAATCAATGTGATTccgcaagtgttccctggaagcagccacatgagttgcctctgggactttgact Alignment from Spaln_aa2Genome GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAA-GAGATCAACGTGATTCC ataccttctctgcaaattaatattgcgtgcagttttctttttcattgcagGAAATCATATTCTACAAAATTACTGATTACATTTTACATGGCAAAGAAcGAAATCAATGTGATTCCgcaagtgttccctggaagcagccacatgagttgcctctgggactttgact Alignment from Spaln_nt2Genome GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAA-GAGATCAACGTGATTCC ataccttctctgcaaattaatattgcgtgcagttttctttttcattgcagGAAATCATATTCTACAAAATTACTGATTACATTTTACATGGCAAAGAACGAAATCAATGTGATTCCgcaagtgttccctggaagcagccacatgagttgcctctgggactttgact Alignment from Pairagon GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAA-GAGATCAACGTGATTCC ataccttctctgcaaattaatattgcgtgcagttttctttttcattgcagGAAATCATATTCTACAAAATTACTGATTACATTTTACATGGCAAAGAACGAAATCAATGTGATTCCgcaagtgttccctggaagcagccacatgagttgcctctgggactttgact Alignment from Exonerate_protein2genome GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAA-GAGATCAACGTGATTCC ataccttctctgcaaattaatattgcgtgcagttttctttttcattgcagGAAATCATATTCTACAAAATTACTGATTACATTTTACATGGCAAAGAACGAAATCAATGTGATTCCgcaagtgttccctggaagcagccacatgagttgcctctgggactttgact Alignment from Exonerate_coding2genome GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAA-GAGATCAACGTGATTCC ataccttctctgcaaattaatattgcgtgcagttttctttttcattgcagGAAATCATATTCTACAAAATTACTGATTACATTTTACATGGCAAAGAACGAAATCAATGTGATTCCgcaagtgttccctggaagcagccacatgagttgcctctgggactttgact Alignment from GeneWise GAAATCATCTTCTATAAAATCATCGATTACATTTTACATGGAAAAGAA-GAGATCAACGTGATTCCGTCA-- ataccttctctgcaaattaatattgcgtgcagttttctttttcattgcagGAAATCATATTCTACAAAATTACTGATTACATTTTACATGGCAAAGAACGAAATCAATGTGATTCCGCAAGTgttccctggaagcagccacatgagttgcctctgggactttgact #### Pde6c_ID7550_20 --> 0 - 0 Original Alignment CCTATGATGGACAGAAGCAAAAAGGATGAA-CTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG ctccccaaactctcaggaaacctcttaagaccctgtgctgtcgtttgcagCCTATGATGGACAGAAGCAAAAAGGATGAACCTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTGTACAAGgtaggctatttgaatgaaatatagcttaacttaatttcattgacaagttt Alignment from CESAR CCTATGATGGACAGAAGCAAAAAGGATGAA-CTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG ctccccaaactctcaggaaacctcttaagaccctgtgctgtcgtttgcagCCTATGATGGACAGAAGCAAAAAGGATGAACCTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTGTACAAGgtaggctatttgaatgaaatatagcttaacttaatttcattgacaagttt Alignment from Spaln_aa2Genome CCTATGATGGACAGAAGCAAAAAGGATGAA-CTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG ctccccaaactctcaggaaacctcttaagaccctgtgctgtcgtttgcagCCTATGATGGACAGAAGCAAAAAGGATGAAcCTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTGTACAAGgtaggctatttgaatgaaatatagcttaacttaatttcattgacaagttt Alignment from Spaln_nt2Genome CCTATGATGGACAGAAGCAAAAAGGATGAA-CTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG ctccccaaactctcaggaaacctcttaagaccctgtgctgtcgtttgcagCCTATGATGGACAGAAGCAAAAAGGATGAACCTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTGTACAAGgtaggctatttgaatgaaatatagcttaacttaatttcattgacaagttt Alignment from Pairagon CCTATGATGGACAGAAGCAAAAAGGATGAA-CTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG ctccccaaactctcaggaaacctcttaagaccctgtgctgtcgtttgcagCCTATGATGGACAGAAGCAAAAAGGATGAACCTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTGTACAAGgtaggctatttgaatgaaatatagcttaacttaatttcattgacaagttt Alignment from Exonerate_protein2genome CCTATGATGGACAGAAGCAAAAAGGATGAA-CTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG ctccccaaactctcaggaaacctcttaagaccctgtgctgtcgtttgcagCCTATGATGGACAGAAGCAAAAAGGATGAACCTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTGTACAAGgtaggctatttgaatgaaatatagcttaacttaatttcattgacaagttt Alignment from Exonerate_coding2genome CCTATGATGGACAGAAGCAAAAAGGATGAA-CTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG ctccccaaactctcaggaaacctcttaagaccctgtgctgtcgtttgcagCCTATGATGGACAGAAGCAAAAAGGATGAACCTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTGTACAAGgtaggctatttgaatgaaatatagcttaacttaatttcattgacaagttt Alignment from GeneWise CCTATGATGGACAGAAGCAAAAAGGATGAA-CTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG ctccccaaactctcaggaaacctcttaagaccctgtgctgtcgtttgcagCCTATGATGGACAGAAGCAAAAAGGATGAACCTCCCGAAACTTCAAGTGGGATTTATTGATTTTGTTTGTACTTTCGTGTACAAGgtaggctatttgaatgaaatatagcttaacttaatttcattgacaagttt #### Peo1_ID9266_3 --> 1 - 2 Original Alignment gTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAG-CTCTCCTCTGACag tctgtagtgtcctgagagtactgactttcacgtctgccctcctctctcaggTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTACGACATCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCATGAGCAGCCTCTCCTCTGACaggtaggttggtgagttcttcgtgtccgactgacacgcgcttgttttctctt Alignment from CESAR gTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAG-CTCTCCTCTGACag tctgtagtgtcctgagagtactgactttcacgtctgccctcctctctcaggTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTACGACATCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCATGAGCAGCCTCTCCTCTGACaggtaggttggtgagttcttcgtgtccgactgacacgcgcttgttttctctt Alignment from Spaln_aa2Genome GTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAG-CTCTCCTCTGACAG tctgtagtgtcctgagagtactgactttcacgtctgccctcctctctcagGTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTACGACATCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCATGAGCAGcCTCTCCTCTGACAGgtaggttggtgagttcttcgtgtccgactgacacgcgcttgttttctctt Alignment from Spaln_nt2Genome GTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGC-TCTCCTCTGACAG tctgtagtgtcctgagagtactgactttcacgtctgccctcctctctcagGTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTACGACATCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCATGAGCAGCCTCTCCTCTGACAGgtaggttggtgagttcttcgtgtccgactgacacgcgcttgttttctctt Alignment from Pairagon GTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAG-CTCTCCTCTGACAG tctgtagtgtcctgagagtactgactttcacgtctgccctcctctctcagGTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTACGACATCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCATGAGCAGCCTCTCCTCTGACAGgtaggttggtgagttcttcgtgtccgactgacacgcgcttgttttctctt Alignment from Exonerate_protein2genome GTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAG-CTCTCCTCTGACAG tctgtagtgtcctgagagtactgactttcacgtctgccctcctctctcagGTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTACGACATCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCATGAGCAGCCTCTCCTCTGACAGgtaggttggtgagttcttcgtgtccgactgacacgcgcttgttttctctt Alignment from Exonerate_coding2genome GTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAG-CTCTCCTCTGACAG tctgtagtgtcctgagagtactgactttcacgtctgccctcctctctcagGTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTACGACATCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCATGAGCAGCCTCTCCTCTGACAGgtaggttggtgagttcttcgtgtccgactgacacgcgcttgttttctctt Alignment from GeneWise GTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAG-CTCTCCTCTGACAG tctgtagtgtcctgagagtactgactttcacgtctgccctcctctctcagGTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTACGACATCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCATGAGCAGCCTCTCCTCTGACAGgtaggttggtgagttcttcgtgtccgactgacacgcgcttgttttctctt #### Pga5_ID2974_4 --> 2 - 0 Original Alignment ctCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCC-TATGACACTGTCAGG accagttatccgagcacacctaaagttcaccaccctcctctttctcccagctCACCACAAAGCCTTCAACACACTTCGGTCTTCCACTTTCCTGATCTCAGGACAACCTGTGAATGTCGCCTATGGCTCAGGAGAGATGTCTGGATTTCTCGCTCTATGACACTGTCAGGgtgagttgggaagcagagggtggctcggggctggctctgggtgagaactt Alignment from CESAR ctCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCC-TATGACACTGTCAGG accagttatccgagcacacctaaagttcaccaccctcctctttctcccagctCACCACAAAGCCTTCAACACACTTCGGTCTTCCACTTTCCTGATCTCAGGACAACCTGTGAATGTCGCCTATGGCTCAGGAGAGATGTCTGGATTTCTCGCTCTATGACACTGTCAGGgtgagttgggaagcagagggtggctcggggctggctctgggtgagaactt Alignment from Spaln_aa2Genome CTCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCC-TATGACACTGTCAGG accagttatccgagcacacctaaagttcaccaccctcctctttctcccagCTCACCACAAAGCCTTCAACACACTTCGGTCTTCCACTTTCCTGATCTCAGGACAACCTGTGAATGTCGCCTATGGCTCAGGAGAGATGTCTGGATTTCTCGCTcTATGACACTGTCAGGgtgagttgggaagcagagggtggctcggggctggctctgggtgagaactt Alignment from Spaln_nt2Genome CTCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGC-CTATGACACTGTCAGG accagttatccgagcacacctaaagttcaccaccctcctctttctcccagCTCACCACAAAGCCTTCAACACACTTCGGTCTTCCACTTTCCTGATCTCAGGACAACCTGTGAATGTCGCCTATGGCTCAGGAGAGATGTCTGGATTTCTCGCTCTATGACACTGTCAGGgtgagttgggaagcagagggtggctcggggctggctctgggtgagaactt Alignment from Pairagon CTCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGC-CTATGACACTGTCAGG accagttatccgagcacacctaaagttcaccaccctcctctttctcccagCTCACCACAAAGCCTTCAACACACTTCGGTCTTCCACTTTCCTGATCTCAGGACAACCTGTGAATGTCGCCTATGGCTCAGGAGAGATGTCTGGATTTCTCGCTCTATGACACTGTCAGGgtgagttgggaagcagagggtggctcggggctggctctgggtgagaactt Alignment from Exonerate_protein2genome CTCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCC-TATGACACTGTCAGG accagttatccgagcacacctaaagttcaccaccctcctctttctcccagCTCACCACAAAGCCTTCAACACACTTCGGTCTTCCACTTTCCTGATCTCAGGACAACCTGTGAATGTCGCCTATGGCTCAGGAGAGATGTCTGGATTTCTCGCTCTATGACACTGTCAGGgtgagttgggaagcagagggtggctcggggctggctctgggtgagaactt Alignment from Exonerate_coding2genome CTCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTTGCC-TATGACACTGTCAGG accagttatccgagcacacctaaagttcaccaccctcctctttctcccagCTCACCACAAAGCCTTCAACACACTTCGGTCTTCCACTTTCCTGATCTCAGGACAACCTGTGAATGTCGCCTATGGCTCAGGAGAGATGTCTGGATTTCTCGCTCTATGACACTGTCAGGgtgagttgggaagcagagggtggctcggggctggctctgggtgagaactt Alignment from GeneWise CTCACCACAAAGCCTTCAACCCGCTTCGGTCTTCCACTTTCCTGGTCTCAGGCCGACCTGTGAATGTTGCCTATGGCTCAGGAGAGATGTCCGGATTTCTT-GCCTATGACACTGTCAGG accagttatccgagcacacctaaagttcaccaccctcctctttctcccagCTCACCACAAAGCCTTCAACACACTTCGGTCTTCCACTTTCCTGATCTCAGGACAACCTGTGAATGTCGCCTATGGCTCAGGAGAGATGTCTGGATTTCTCGCTCTATGACACTGTCAGGgtgagttgggaagcagagggtggctcggggctggctctgggtgagaactt #### Pitpnm1_ID315_12 --> 0 - 2 Original Alignment AACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTACGG-GACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCTGATCCTGATGGCTCTCAGAACag gatggtctcaggtctaagggatgctactttcttttcttggattacttcagATGAATGAGATGCTCTCGCCTGAAGTTGGTCCAGTACGACGACCCACTGGCAGATGGGGTGGAGGTGCTGGGTCGTGCTAGTCCAGAACCCTCAGCCCTACTTGCTCAGCGCACCTTCAGTGACATGGCCAACCCTGACCCTGATGGCTCCCAGAATaggtaagcgcttttcacagtagtcctagcccaaaaactaagcttgacctcag Alignment from CESAR AACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTACGG-GACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCTGATCCTGATGGCTCTCAGAACag gatggtctcaggtctaagggatgctactttcttttcttggattacttcagATGAATGAGATGCTCTCGCCTGAAGTTGGTCCAGTACGACGACCCACTGGCAGATGGGGTGGAGGTGCTGGGTCGTGCTAGTCCAGAACCCTCAGCCCTACTTGCTCAGCGCACCTTCAGTGACATGGCCAACCCTGACCCTGATGGCTCCCAGAATaggtaagcgcttttcacagtagtcctagcccaaaaactaagcttgacctcag Alignment from Spaln_aa2Genome AACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTACGG-GACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCTGATCCTGATGGCTCTCAGAACAG gatggtctcaggtctaagggatgctactttcttttcttggattacttcagATGAATGAGATGCTCTCGCCTGAAGTTGGTCCAGTACGAcGACCCACTGGCAGATGGGGTGGAGGTGCTGGGTCGTGCTAGTCCAGAACCCTCAGCCCTACTTGCTCAGCGCACCTTCAGTGACATGGCCAACCCTGACCCTGATGGCTCCCAGAATAGgtaagcgcttttcacagtagtcctagcccaaaaactaagcttgacctcag Alignment from Spaln_nt2Genome AACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTACGG-GACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCTGATCCTGATGGCTCTCAGAACAG gatggtctcaggtctaagggatgctactttcttttcttggattacttcagATGAATGAGATGCTCTCGCCTGAAGTTGGTCCAGTACGACGACCCACTGGCAGATGGGGTGGAGGTGCTGGGTCGTGCTAGTCCAGAACCCTCAGCCCTACTTGCTCAGCGCACCTTCAGTGACATGGCCAACCCTGACCCTGATGGCTCCCAGAATAGgtaagcgcttttcacagtagtcctagcccaaaaactaagcttgacctcag Alignment from Pairagon AACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTACGG-GACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCTGATCCTGATGGCTCTCAGAACAG gatggtctcaggtctaagggatgctactttcttttcttggattacttcagATGAATGAGATGCTCTCGCCTGAAGTTGGTCCAGTACGACGACCCACTGGCAGATGGGGTGGAGGTGCTGGGTCGTGCTAGTCCAGAACCCTCAGCCCTACTTGCTCAGCGCACCTTCAGTGACATGGCCAACCCTGACCCTGATGGCTCCCAGAATAGgtaagcgcttttcacagtagtcctagcccaaaaactaagcttgacctcag Alignment from Exonerate_protein2genome AACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTACGG-GACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCTGATCCTGATGGCTCTCAGAACAG gatggtctcaggtctaagggatgctactttcttttcttggattacttcagATGAATGAGATGCTCTCGCCTGAAGTTGGTCCAGTACGACGACCCACTGGCAGATGGGGTGGAGGTGCTGGGTCGTGCTAGTCCAGAACCCTCAGCCCTACTTGCTCAGCGCACCTTCAGTGACATGGCCAACCCTGACCCTGATGGCTCCCAGAATAGgtaagcgcttttcacagtagtcctagcccaaaaactaagcttgacctcag Alignment from Exonerate_coding2genome AACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTACGG-GACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCTGATCCTGATGGCTCTCAGAACAG gatggtctcaggtctaagggatgctactttcttttcttggattacttcagATGAATGAGATGCTCTCGCCTGAAGTTGGTCCAGTACGACGACCCACTGGCAGATGGGGTGGAGGTGCTGGGTCGTGCTAGTCCAGAACCCTCAGCCCTACTTGCTCAGCGCACCTTCAGTGACATGGCCAACCCTGACCCTGATGGCTCCCAGAATAGgtaagcgcttttcacagtagtcctagcccaaaaactaagcttgacctcag Alignment from GeneWise AACAATGAGATGCTCTCCCCTGAAGTTGGTCCAGTA-CGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCTGATCCTGATGGCTCTCAGAACAG gatggtctcaggtctaagggatgctactttcttttcttggattacttcagATGAATGAGATGCTCTCGCCTGAAGTTGGTCCAGTACGACGACCCACTGGCAGATGGGGTGGAGGTGCTGGGTCGTGCTAGTCCAGAACCCTCAGCCCTACTTGCTCAGCGCACCTTCAGTGACATGGCCAACCCTGACCCTGATGGCTCCCAGAATAGgtaagcgcttttcacagtagtcctagcccaaaaactaagcttgacctcag #### Pitpnm1_ID318_15 --> 2 - 1 Original Alignment ctGACACTTTGCAAACCCATTCGAGTCTCTTCCTGGAAGAGCTGGAGATGATGGTGCCCTCCACACCCACCTCGGCCAGT---GGTGCCTTCTGG-AAGGGCAGTGAACTAGGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGCACCACCAGCGAGGTTGTTAAGa agaagaggcatgggggcagtctgatcctgttttcttgtgatttgttcaagctGAGACTTTGCCAACTCGTTCAAGTCTCTTCCTGGAAGAGCTGGAAATGATGGTGCCCTCCACACCCACCTCAACCAGTGACAGTGCCTTCTGGCAAGGGCAGTGAGCTAGGCAATGAGCCAGCATCTCAGACAGCAGCTCCCAGTACCACCAGTGAGGTTGTCAACagtgagtcagccagcactgccttctactgttagcctacctggaagcatgtt Alignment from CESAR ctGACACTTTGCAAACCCATTCGAGTCTCTTCCTGGAAGAGCTGGAGATGATGGTGCCCTCCACACCCACCTCGGCCAGT---GGTGCCTTCTGG-AAGGGCAGTGAACTAGGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGCACCACCAGCGAGGTTGTTAAGa agaagaggcatgggggcagtctgatcctgttttcttgtgatttgttcaagctGAGACTTTGCCAACTCGTTCAAGTCTCTTCCTGGAAGAGCTGGAAATGATGGTGCCCTCCACACCCACCTCAACCAGTGACAGTGCCTTCTGGCAAGGGCAGTGAGCTAGGCAATGAGCCAGCATCTCAGACAGCAGCTCCCAGTACCACCAGTGAGGTTGTCAACagtgagtcagccagcactgccttctactgttagcctacctggaagcatgtt Alignment from Spaln_aa2Genome CTGACACTTTGCAAACCCATTCGAGTCTCTTCCTGGAAGAGCTGGAGATGATGGTGCCCTCCACACCCACCTCGGCCAGT---GGTGCCTTCTGG-AAGGGCAGTGAACTAGGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGCACCACCAGCGAGGTTGTTAAGA agaagaggcatgggggcagtctgatcctgttttcttgtgatttgttcaagCTGAGACTTTGCCAACTCGTTCAAGTCTCTTCCTGGAAGAGCTGGAAATGATGGTGCCCTCCACACCCACCTCAACCAGTGACAGTGCCTTCTGGcAAGGGCAGTGAGCTAGGCAATGAGCCAGCATCTCAGACAGCAGCTCCCAGTACCACCAGTGAGGTTGTCAACAgtgagtcagccagcactgccttctactgttagcctacctggaagcatgtt Alignment from Spaln_nt2Genome CTGACACTTTGCAAACCCATTCGAGTCTCTTCCTGGAAGAGCTGGAGATGATGGTGCCCTCCACACCCACCTCGGCCAGTG---GTGCCTTCTGG-AAGGGCAGTGAACTAGGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGCACCACCAGCGAGGTTGTTAAGA agaagaggcatgggggcagtctgatcctgttttcttgtgatttgttcaagCTGAGACTTTGCCAACTCGTTCAAGTCTCTTCCTGGAAGAGCTGGAAATGATGGTGCCCTCCACACCCACCTCAACCAGTGACAGTGCCTTCTGGCAAGGGCAGTGAGCTAGGCAATGAGCCAGCATCTCAGACAGCAGCTCCCAGTACCACCAGTGAGGTTGTCAACAgtgagtcagccagcactgccttctactgttagcctacctggaagcatgtt Alignment from Pairagon CTGACACTTTGCAAACCCATTCGAGTCTCTTCCTGGAAGAGCTGGAGATGATGGTGCCCTCCACACCCACCTCGGCCAGTG---GTGCCTTCTGG-AAGGGCAGTGAACTAGGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGCACCACCAGCGAGGTTGTTAAGA agaagaggcatgggggcagtctgatcctgttttcttgtgatttgttcaagCTGAGACTTTGCCAACTCGTTCAAGTCTCTTCCTGGAAGAGCTGGAAATGATGGTGCCCTCCACACCCACCTCAACCAGTGACAGTGCCTTCTGGCAAGGGCAGTGAGCTAGGCAATGAGCCAGCATCTCAGACAGCAGCTCCCAGTACCACCAGTGAGGTTGTCAACAgtgagtcagccagcactgccttctactgttagcctacctggaagcatgtt Alignment from Exonerate_protein2genome CTGACACTTTGCAAACCCATTCGAGTCTCTTCCTGGAAGAGCTGGAGATGATGGTGCCCTCCACACCCACCTCGGCCAGT---GGTGCCTTCTGG-AAGGGCAGTGAACTAGGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGCACCACCAGCGAGGTTGTTAAGA agaagaggcatgggggcagtctgatcctgttttcttgtgatttgttcaagCTGAGACTTTGCCAACTCGTTCAAGTCTCTTCCTGGAAGAGCTGGAAATGATGGTGCCCTCCACACCCACCTCAACCAGTGACAGTGCCTTCTGGCAAGGGCAGTGAGCTAGGCAATGAGCCAGCATCTCAGACAGCAGCTCCCAGTACCACCAGTGAGGTTGTCAACAgtgagtcagccagcactgccttctactgttagcctacctggaagcatgtt Alignment from Exonerate_coding2genome CTGACACTTTGCAAACCCATTCGAGTCTCTTCCTGGAAGAGCTGGAGATGATGGTGCCCTCCACACCCACCTCGGCCAGT---GGTGCCTTCTGG-AAGGGCAGTGAACTAGGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGCACCACCAGCGAGGTTGTTAAGA agaagaggcatgggggcagtctgatcctgttttcttgtgatttgttcaagCTGAGACTTTGCCAACTCGTTCAAGTCTCTTCCTGGAAGAGCTGGAAATGATGGTGCCCTCCACACCCACCTCAACCAGTGACAGTGCCTTCTGGCAAGGGCAGTGAGCTAGGCAATGAGCCAGCATCTCAGACAGCAGCTCCCAGTACCACCAGTGAGGTTGTCAACAgtgagtcagccagcactgccttctactgttagcctacctggaagcatgtt Alignment from GeneWise CTGACACTTTGCAAACCCATTCGAGTCTCTTCCTGGAAGAGCTGGAGATGATGGTGCCCTCCACACCCACCTCGGCCAGT---GGTGCCTTCTGG-AAGGGCAGTGAACTAGGCAATGAGCCAGCATCCCAGACAGCAGCCCCCAGCACCACCAGCGAGGTTGTTAAGA agaagaggcatgggggcagtctgatcctgttttcttgtgatttgttcaagCTGAGACTTTGCCAACTCGTTCAAGTCTCTTCCTGGAAGAGCTGGAAATGATGGTGCCCTCCACACCCACCTCAACCAGTGACAGTGCCTTCTGGCAAGGGCAGTGAGCTAGGCAATGAGCCAGCATCTCAGACAGCAGCTCCCAGTACCACCAGTGAGGTTGTCAACAgtgagtcagccagcactgccttctactgttagcctacctggaagcatgtt #### Pitpnm1_ID319_16 --> 2 - 0 Original Alignment tcCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTC-ACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcccaagccctgcttttcctgcagtcCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCCCAGAGGCACTCACAGCCTTCCCCACAGTCCACACTGCCCCACCTCTTCCATGCCAGCTACTGGGAGTCAGCGGATGTAGTCGCCTTCATTCTGCGCCAGgtatgtgaacccagggtgtgggcccaacgctgggacgactaggactattt Alignment from CESAR tcCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTC-ACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcccaagccctgcttttcctgcagtcCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCCCAGAGGCACTCACAGCCTTCCCCACAGTCCACACTGCCCCACCTCTTCCATGCCAGCTACTGGGAGTCAGCGGATGTAGTCGCCTTCATTCTGCGCCAGgtatgtgaacccagggtgtgggcccaacgctgggacgactaggactattt Alignment from Spaln_aa2Genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTC-ACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcccaagccctgcttttcctgcagTCCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCCCAGAGGCACTCACAGCCTTCCCCACAGTCcACACTGCCCCACCTCTTCCATGCCAGCTACTGGGAGTCAGCGGATGTAGTCGCCTTCATTCTGCGCCAGgtatgtgaacccagggtgtgggcccaacgctgggacgactaggactattt Alignment from Spaln_nt2Genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGT-CACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcccaagccctgcttttcctgcagTCCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCCCAGAGGCACTCACAGCCTTCCCCACAGTCCACACTGCCCCACCTCTTCCATGCCAGCTACTGGGAGTCAGCGGATGTAGTCGCCTTCATTCTGCGCCAGgtatgtgaacccagggtgtgggcccaacgctgggacgactaggactattt Alignment from Pairagon TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGT-CACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcccaagccctgcttttcctgcagTCCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCCCAGAGGCACTCACAGCCTTCCCCACAGTCCACACTGCCCCACCTCTTCCATGCCAGCTACTGGGAGTCAGCGGATGTAGTCGCCTTCATTCTGCGCCAGgtatgtgaacccagggtgtgggcccaacgctgggacgactaggactattt Alignment from Exonerate_protein2genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTC-ACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcccaagccctgcttttcctgcagTCCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCCCAGAGGCACTCACAGCCTTCCCCACAGTCCACACTGCCCCACCTCTTCCATGCCAGCTACTGGGAGTCAGCGGATGTAGTCGCCTTCATTCTGCGCCAGgtatgtgaacccagggtgtgggcccaacgctgggacgactaggactattt Alignment from Exonerate_coding2genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTC-ACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcccaagccctgcttttcctgcagTCCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCCCAGAGGCACTCACAGCCTTCCCCACAGTCCACACTGCCCCACCTCTTCCATGCCAGCTACTGGGAGTCAGCGGATGTAGTCGCCTTCATTCTGCGCCAGgtatgtgaacccagggtgtgggcccaacgctgggacgactaggactattt Alignment from GeneWise TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACG-GTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG ggcagtggacagcagtccaccctgactcccaagccctgcttttcctgcagTCCTGGACCGCTGGTGGGGAAACAAGCGGATTGACTATTCACTGTACTGCCCAGAGGCACTCACAGCCTTCCCCACAGTCCACACTGCCCCACCTCTTCCATGCCAGCTACTGGGAGTCAGCGGATGTAGTCGCCTTCATTCTGCGCCAGgtatgtgaacccagggtgtgggcccaacgctgggacgactaggactattt #### Pitpnm1_ID321_18 --> 0 - 0 Original Alignment AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACG-CTCACTGGAGAGAAG ccaactcgcccttccctttgttttctgtccctttgctgctgcccctacagAATGTCACTTCCAACCACCGAGCGAGTGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCGTTGGATGTGGTCACACCTCACTGGAGAGAAGgtatgtacccacatccatgctcctggtgaatcctaccctaccctaatagc Alignment from CESAR AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACG-CTCACTGGAGAGAAG ccaactcgcccttccctttgttttctgtccctttgctgctgcccctacagAATGTCACTTCCAACCACCGAGCGAGTGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCGTTGGATGTGGTCACACCTCACTGGAGAGAAGgtatgtacccacatccatgctcctggtgaatcctaccctaccctaatagc Alignment from Spaln_aa2Genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACG-CTCACTGGAGAGAAG ccaactcgcccttccctttgttttctgtccctttgctgctgcccctacagAATGTCACTTCCAACCACCGAGCGAGTGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCGTTGGATGTGGTCACAcCTCACTGGAGAGAAGgtatgtacccacatccatgctcctggtgaatcctaccctaccctaatagc Alignment from Spaln_nt2Genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGC-TCACTGGAGAGAAG ccaactcgcccttccctttgttttctgtccctttgctgctgcccctacagAATGTCACTTCCAACCACCGAGCGAGTGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCGTTGGATGTGGTCACACCTCACTGGAGAGAAGgtatgtacccacatccatgctcctggtgaatcctaccctaccctaatagc Alignment from Pairagon AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACG-CTCACTGGAGAGAAG ccaactcgcccttccctttgttttctgtccctttgctgctgcccctacagAATGTCACTTCCAACCACCGAGCGAGTGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCGTTGGATGTGGTCACACCTCACTGGAGAGAAGgtatgtacccacatccatgctcctggtgaatcctaccctaccctaatagc Alignment from Exonerate_protein2genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACG-CTCACTGGAGAGAAG ccaactcgcccttccctttgttttctgtccctttgctgctgcccctacagAATGTCACTTCCAACCACCGAGCGAGTGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCGTTGGATGTGGTCACACCTCACTGGAGAGAAGgtatgtacccacatccatgctcctggtgaatcctaccctaccctaatagc Alignment from Exonerate_coding2genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACG-CTCACTGGAGAGAAG ccaactcgcccttccctttgttttctgtccctttgctgctgcccctacagAATGTCACTTCCAACCACCGAGCGAGTGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCGTTGGATGTGGTCACACCTCACTGGAGAGAAGgtatgtacccacatccatgctcctggtgaatcctaccctaccctaatagc Alignment from GeneWise AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACG-CTCACTGGAGAGAAG ccaactcgcccttccctttgttttctgtccctttgctgctgcccctacagAATGTCACTTCCAACCACCGAGCGAGTGACACTGTGGTATGTGAGGGCCGTCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCGTTGGATGTGGTCACACCTCACTGGAGAGAAGgtatgtacccacatccatgctcctggtgaatcctaccctaccctaatagc #### Pitpnm1_ID325_22 --> 0 - 0 Original Alignment GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAG-ACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttggctatatggctctatcacgttgttgcttttgttacagGTAGATCTGAACATCGTAGCTGGATATGGGTCACCAAAAGATGTGGCAGTCTACGCAGCATTGGGGCTCTCTCCGAGCCAGCACCTATATTATTGGCCGTGGCGTCCGCAAGTTGCAGGCACAGTGTCAGgtatgttctaaggaagggcaggtaacagaagtccagggtcaaggctaaga Alignment from CESAR GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAG-ACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttggctatatggctctatcacgttgttgcttttgttacagGTAGATCTGAACATCGTAGCTGGATATGGGTCACCAAAAGATGTGGCAGTCTACGCAGCATTGGGGCTCTCTCCGAGCCAGCACCTATATTATTGGCCGTGGCGTCCGCAAGTTGCAGGCACAGTGTCAGgtatgttctaaggaagggcaggtaacagaagtccagggtcaaggctaaga Alignment from Spaln_aa2Genome GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAG-ACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttggctatatggctctatcacgttgttgcttttgttacagGTAGATCTGAACATCGTAGCTGGATATGGGTCACCAAAAGATGTGGCAGTCTACGCAGCATTGGGGCTCTCTCCGAGCCAGcACCTATATTATTGGCCGTGGCGTCCGCAAGTTGCAGGCACAGTGTCAGgtatgttctaaggaagggcaggtaacagaagtccagggtcaaggctaaga Alignment from Spaln_nt2Genome GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAG-ACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttggctatatggctctatcacgttgttgcttttgttacagGTAGATCTGAACATCGTAGCTGGATATGGGTCACCAAAAGATGTGGCAGTCTACGCAGCATTGGGGCTCTCTCCGAGCCAGCACCTATATTATTGGCCGTGGCGTCCGCAAGTTGCAGGCACAGTGTCAGgtatgttctaaggaagggcaggtaacagaagtccagggtcaaggctaaga Alignment from Pairagon GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAG-ACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttggctatatggctctatcacgttgttgcttttgttacagGTAGATCTGAACATCGTAGCTGGATATGGGTCACCAAAAGATGTGGCAGTCTACGCAGCATTGGGGCTCTCTCCGAGCCAGCACCTATATTATTGGCCGTGGCGTCCGCAAGTTGCAGGCACAGTGTCAGgtatgttctaaggaagggcaggtaacagaagtccagggtcaaggctaaga Alignment from Exonerate_protein2genome GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAG-ACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttggctatatggctctatcacgttgttgcttttgttacagGTAGATCTGAACATCGTAGCTGGATATGGGTCACCAAAAGATGTGGCAGTCTACGCAGCATTGGGGCTCTCTCCGAGCCAGCACCTATATTATTGGCCGTGGCGTCCGCAAGTTGCAGGCACAGTGTCAGgtatgttctaaggaagggcaggtaacagaagtccagggtcaaggctaaga Alignment from Exonerate_coding2genome GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAG-ACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttggctatatggctctatcacgttgttgcttttgttacagGTAGATCTGAACATCGTAGCTGGATATGGGTCACCAAAAGATGTGGCAGTCTACGCAGCATTGGGGCTCTCTCCGAGCCAGCACCTATATTATTGGCCGTGGCGTCCGCAAGTTGCAGGCACAGTGTCAGgtatgttctaaggaagggcaggtaacagaagtccagggtcaaggctaaga Alignment from GeneWise GTAGAACTGAACATCGTGGCTGGATATGGGTCACCAAAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAG-ACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttggctatatggctctatcacgttgttgcttttgttacagGTAGATCTGAACATCGTAGCTGGATATGGGTCACCAAAAGATGTGGCAGTCTACGCAGCATTGGGGCTCTCTCCGAGCCAGCACCTATATTATTGGCCGTGGCGTCCGCAAGTTGCAGGCACAGTGTCAGgtatgttctaaggaagggcaggtaacagaagtccagggtcaaggctaaga #### Pkd2l1_ID8955_13 --> 0 - 2 Original Alignment GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCCCCAGGCGAATTGGGCGCG-GAGGCTGCCAGAGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACat tgactccccagactcagcatcttttcacgctcctgcctctgtccgcacagGTGACCCTCAATGCTGAGATTGAGAACCTAGGCCAGTCTGTTGGACATAGCCCTCCAGGTGAACTGGGTGTGCGAGGCTGCAAGGGGACAAAGCTGGGTTTCTGGAGAAGAATTTGACatgtaagtggaggctagggtaaggaatggctggctgtggcaccttttgagac Alignment from CESAR GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCCCCAGGCGAATTGGGCGCG-GAGGCTGCCAGAGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACat tgactccccagactcagcatcttttcacgctcctgcctctgtccgcacagGTGACCCTCAATGCTGAGATTGAGAACCTAGGCCAGTCTGTTGGACATAGCCCTCCAGGTGAACTGGGTGTGCGAGGCTGCAAGGGGACAAAGCTGGGTTTCTGGAGAAGAATTTGACatgtaagtggaggctagggtaaggaatggctggctgtggcaccttttgagac Alignment from Spaln_aa2Genome GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCCCCAGGCGAATTGGGCGCG-GAGGCTGCCAGAGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACAT tgactccccagactcagcatcttttcacgctcctgcctctgtccgcacagGTGACCCTCAATGCTGAGATTGAGAACCTAGGCCAGTCTGTTGGACATAGCCCTCCAGGTGAACTGGGTGTGcGAGGCTGCAAGGGGACAAAGCTGGGTTTCTGGAGAAGAATTTGACATgtaagtggaggctagggtaaggaatggctggctgtggcaccttttgagac Alignment from Spaln_nt2Genome GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCCCCAGGCGAATTGGGCGCG-GAGGCTGCCAGAGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACAT tgactccccagactcagcatcttttcacgctcctgcctctgtccgcacagGTGACCCTCAATGCTGAGATTGAGAACCTAGGCCAGTCTGTTGGACATAGCCCTCCAGGTGAACTGGGTGTGCGAGGCTGCAAGGGGACAAAGCTGGGTTTCTGGAGAAGAATTTGACATgtaagtggaggctagggtaaggaatggctggctgtggcaccttttgagac Alignment from Pairagon GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCCCCAGGCGAATTGGGCGCG-GAGGCTGCCAGAGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACAT tgactccccagactcagcatcttttcacgctcctgcctctgtccgcacagGTGACCCTCAATGCTGAGATTGAGAACCTAGGCCAGTCTGTTGGACATAGCCCTCCAGGTGAACTGGGTGTGCGAGGCTGCAAGGGGACAAAGCTGGGTTTCTGGAGAAGAATTTGACATgtaagtggaggctagggtaaggaatggctggctgtggcaccttttgagac Alignment from Exonerate_protein2genome GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCCCCAGGCGAATTGGGC-GCGGAGGCTGCCAGAGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACAT tgactccccagactcagcatcttttcacgctcctgcctctgtccgcacagGTGACCCTCAATGCTGAGATTGAGAACCTAGGCCAGTCTGTTGGACATAGCCCTCCAGGTGAACTGGGTGTGCGAGGCTGCAAGGGGACAAAGCTGGGTTTCTGGAGAAGAATTTGACATgtaagtggaggctagggtaaggaatggctggctgtggcaccttttgagac Alignment from Exonerate_coding2genome GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCCCCAGGCGAATTGGGC-GCGGAGGCTGCCAGAGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACAT tgactccccagactcagcatcttttcacgctcctgcctctgtccgcacagGTGACCCTCAATGCTGAGATTGAGAACCTAGGCCAGTCTGTTGGACATAGCCCTCCAGGTGAACTGGGTGTGCGAGGCTGCAAGGGGACAAAGCTGGGTTTCTGGAGAAGAATTTGACATgtaagtggaggctagggtaaggaatggctggctgtggcaccttttgagac Alignment from GeneWise GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCCCCAGGCGAATTGGGC-GCGGAGGCTGCCAGAGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACAT tgactccccagactcagcatcttttcacgctcctgcctctgtccgcacagGTGACCCTCAATGCTGAGATTGAGAACCTAGGCCAGTCTGTTGGACATAGCCCTCCAGGTGAACTGGGTGTGCGAGGCTGCAAGGGGACAAAGCTGGGTTTCTGGAGAAGAATTTGACATgtaagtggaggctagggtaaggaatggctggctgtggcaccttttgagac #### Pkd2l1_ID8960_8 --> 0 - 2 Original Alignment ATATTCAAGTATATCAGCTTCAACAAGACC-ATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCat tcttcctggagtagtctatcccttgacttgctgggtttctttcttcatagATATTTAAGTATATCAGCTTCAATAAGACCCATGACACAGCTCTCCTCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTTGTCAAGTGCatgtaggtatacctgtaccattttaggtcactcatccttcagatcccagcat Alignment from CESAR ATATTCAAGTATATCAGCTTCAACAAGACC-ATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCat tcttcctggagtagtctatcccttgacttgctgggtttctttcttcatagATATTTAAGTATATCAGCTTCAATAAGACCCATGACACAGCTCTCCTCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTTGTCAAGTGCatgtaggtatacctgtaccattttaggtcactcatccttcagatcccagcat Alignment from Spaln_aa2Genome ATATTCAAGTATATCAGCTTCAACAAGACC-ATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT tcttcctggagtagtctatcccttgacttgctgggtttctttcttcatagATATTTAAGTATATCAGCTTCAATAAGACCcATGACACAGCTCTCCTCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTTGTCAAGTGCATgtaggtatacctgtaccattttaggtcactcatccttcagatcccagcat Alignment from Spaln_nt2Genome ATATTCAAGTATATCAGCTTCAACAAGACC-ATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT tcttcctggagtagtctatcccttgacttgctgggtttctttcttcatagATATTTAAGTATATCAGCTTCAATAAGACCCATGACACAGCTCTCCTCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTTGTCAAGTGCATgtaggtatacctgtaccattttaggtcactcatccttcagatcccagcat Alignment from Pairagon ATATTCAAGTATATCAGCTTCAACAAGA-CCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT tcttcctggagtagtctatcccttgacttgctgggtttctttcttcatagATATTTAAGTATATCAGCTTCAATAAGACCCATGACACAGCTCTCCTCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTTGTCAAGTGCATgtaggtatacctgtaccattttaggtcactcatccttcagatcccagcat Alignment from Exonerate_protein2genome ATATTCAAGTATATCAGCTTCAACAAGACC-ATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT tcttcctggagtagtctatcccttgacttgctgggtttctttcttcatagATATTTAAGTATATCAGCTTCAATAAGACCCATGACACAGCTCTCCTCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTTGTCAAGTGCATgtaggtatacctgtaccattttaggtcactcatccttcagatcccagcat Alignment from Exonerate_coding2genome ATATTCAAGTATATCAGCTTCAACAAGACC-ATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT tcttcctggagtagtctatcccttgacttgctgggtttctttcttcatagATATTTAAGTATATCAGCTTCAATAAGACCCATGACACAGCTCTCCTCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTTGTCAAGTGCATgtaggtatacctgtaccattttaggtcactcatccttcagatcccagcat Alignment from GeneWise ATATTCAAGTATATCAGCTTCAACAAG-ACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTCGTCAAGTGCAT tcttcctggagtagtctatcccttgacttgctgggtttctttcttcatagATATTTAAGTATATCAGCTTCAATAAGACCCATGACACAGCTCTCCTCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAAAACTTTAGCACTTTTGTCAAGTGCATgtaggtatacctgtaccattttaggtcactcatccttcagatcccagcat #### Plcb3_ID1901_30 --> 0 - 0 Original Alignment CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTA-GAGGAAGAGGAACCCAAG catcccaagccttgccctgccctcagcctttctctgtggtccctaaacagCTGGAGGAGGCCCAGAAACAGCAGCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTACGAGGAAGAGGAACCCAAGgtatcccctggaggaggcccacacacaagtagcaggggagctggtcaacc Alignment from CESAR CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTA-GAGGAAGAGGAACCCAAG catcccaagccttgccctgccctcagcctttctctgtggtccctaaacagCTGGAGGAGGCCCAGAAACAGCAGCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTACGAGGAAGAGGAACCCAAGgtatcccctggaggaggcccacacacaagtagcaggggagctggtcaacc Alignment from Spaln_aa2Genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTA-GAGGAAGAGGAACCCAAG catcccaagccttgccctgccctcagcctttctctgtggtccctaaacagCTGGAGGAGGCCCAGAAACAGCAGCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAcGAGGAAGAGGAACCCAAGgtatcccctggaggaggcccacacacaagtagcaggggagctggtcaacc Alignment from Spaln_nt2Genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTA-GAGGAAGAGGAACCCAAG catcccaagccttgccctgccctcagcctttctctgtggtccctaaacagCTGGAGGAGGCCCAGAAACAGCAGCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTACGAGGAAGAGGAACCCAAGgtatcccctggaggaggcccacacacaagtagcaggggagctggtcaacc Alignment from Pairagon CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTA-GAGGAAGAGGAACCCAAG catcccaagccttgccctgccctcagcctttctctgtggtccctaaacagCTGGAGGAGGCCCAGAAACAGCAGCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTACGAGGAAGAGGAACCCAAGgtatcccctggaggaggcccacacacaagtagcaggggagctggtcaacc Alignment from Exonerate_protein2genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTA-GAGGAAGAGGAACCCAAG catcccaagccttgccctgccctcagcctttctctgtggtccctaaacagCTGGAGGAGGCCCAGAAACAGCAGCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTACGAGGAAGAGGAACCCAAGgtatcccctggaggaggcccacacacaagtagcaggggagctggtcaacc Alignment from Exonerate_coding2genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCT---AGAGGAAGAGGAACCCAAG catcccaagccttgccctgccctcagcctttctctgtggtccctaaacagCTGGAGGAGGCCCAGAAACAGCAGCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAG--CTACGAGGAAGAGGAACCCAAGgtatcccctggaggaggcccacacacaagtagcaggggagctggtcaacc Alignment from GeneWise CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAG-CTAGAGGAAGAGGAACCCAAG catcccaagccttgccctgccctcagcctttctctgtggtccctaaacagCTGGAGGAGGCCCAGAAACAGCAGCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTACGAGGAAGAGGAACCCAAGgtatcccctggaggaggcccacacacaagtagcaggggagctggtcaacc #### Plcb3_ID1903_28 --> 1 - 2 Original Alignment gGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAG-AAACACAAGAAGGAG---------------gt gtgactatcatccaacgtctgagtctcctgttttgtcttgattaaaataggGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGCAAACACAAGAAGGAAGTGTATGGCCACTGGgtgtaatcccaccgagtgagtgggtgcagggacagagcttagccagctggtt Alignment from CESAR gGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAG-AAACACAAGAAGGAGgt gtgactatcatccaacgtctgagtctcctgttttgtcttgattaaaataggGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGCAAACACAAGAAGGAAgtgtatggccactgggtgtaatcccaccgagtgagtgggtgcagggacagagcttagcaactacact Alignment from Spaln_aa2Genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAG-AAACACAAGAAGGAGGT gtgactatcatccaacgtctgagtctcctgttttgtcttgattaaaatagGGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGcAAACACAAGAAGGAAGTgtatggccactgggtgtaatcccaccgagtgagtgggtgcagggacagagcttagccagctggtt Alignment from Spaln_nt2Genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAG-AAACACAAGAAGGAGGT gtgactatcatccaacgtctgagtctcctgttttgtcttgattaaaatagGGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGCAAACACAAGAAGGAAGTgtatggccactgggtgtaatcccaccgagtgagtgggtgcagggacagagcttagccagctggtt Alignment from Pairagon GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAG-AAACACAAGAAGGAGGT gtgactatcatccaacgtctgagtctcctgttttgtcttgattaaaatagGGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGCAAACACAAGAAGGAAGTgtatggccactgggtgtaatcccaccgagtgagtgggtgcagggacagagcttagccagctggtt Alignment from Exonerate_protein2genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAG-AAACACAAGAAGGAGGT gtgactatcatccaacgtctgagtctcctgttttgtcttgattaaaatagGGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGCAAACACAAGAAGGAAGTgtatggccactgggtgtaatcccaccgagtgagtgggtgcagggacagagcttagccagctggtt Alignment from Exonerate_coding2genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAG-AAACACAAGAAGGAGGT gtgactatcatccaacgtctgagtctcctgttttgtcttgattaaaatagGGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGCAAACACAAGAAGGAAGTgtatggccactgggtgtaatcccaccgagtgagtgggtgcagggacagagcttagccagctggtt Alignment from GeneWise GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAG-AAACACAAGAAGGAGGT gtgactatcatccaacgtctgagtctcctgttttgtcttgattaaaatagGGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGCAAACACAAGAAGGAAGTgtatggccactgggtgtaatcccaccgagtgagtgggtgcagggacagagcttagccagctggtt #### Plcb3_ID1905_26 --> 1 - 0 Original Alignment gGGCAAGGCCACCAACTCGGAGGACGTGAAGGAG-GAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ctctaccagagatctggcaatcagaaagactgcttctctctttgctccagaGGCAAGGCCACCAACTCAGAGGATGTGAAGGAGCGAAGAGGAAGCCAAACAGTATAGAGAGTTCCAGAACCAAAAAGCACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAAACCAAGCGGAAGCTGGAACATCTACGACAGgtaagtgacaggtgaggggcatgtgacactgggggcaagggccagcttcc Alignment from CESAR gGGCAAGGCCACCAACTCGGAGGACGTGAAGGAG-GAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ctctaccagagatctggcaatcagaaagactgcttctctctttgctccagaGGCAAGGCCACCAACTCAGAGGATGTGAAGGAGCGAAGAGGAAGCCAAACAGTATAGAGAGTTCCAGAACCAAAAAGCACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAAACCAAGCGGAAGCTGGAACATCTACGACAGgtaagtgacaggtgaggggcatgtgacactgggggcaagggccagcttcc Alignment from Spaln_aa2Genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAG-GAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ctctaccagagatctggcaatcagaaagactgcttctctctttgctccagAGGCAAGGCCACCAACTCAGAGGATGTGAAGGAGcGAAGAGGAAGCCAAACAGTATAGAGAGTTCCAGAACCAAAAAGCACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAAACCAAGCGGAAGCTGGAACATCTACGACAGgtaagtgacaggtgaggggcatgtgacactgggggcaagggccagcttcc Alignment from Spaln_nt2Genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAG-GAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ctctaccagagatctggcaatcagaaagactgcttctctctttgctccagAGGCAAGGCCACCAACTCAGAGGATGTGAAGGAGCGAAGAGGAAGCCAAACAGTATAGAGAGTTCCAGAACCAAAAAGCACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAAACCAAGCGGAAGCTGGAACATCTACGACAGgtaagtgacaggtgaggggcatgtgacactgggggcaagggccagcttcc Alignment from Pairagon GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAG-GAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ctctaccagagatctggcaatcagaaagactgcttctctctttgctccagAGGCAAGGCCACCAACTCAGAGGATGTGAAGGAGCGAAGAGGAAGCCAAACAGTATAGAGAGTTCCAGAACCAAAAAGCACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAAACCAAGCGGAAGCTGGAACATCTACGACAGgtaagtgacaggtgaggggcatgtgacactgggggcaagggccagcttcc Alignment from Exonerate_protein2genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAG-GAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ctctaccagagatctggcaatcagaaagactgcttctctctttgctccagAGGCAAGGCCACCAACTCAGAGGATGTGAAGGAGCGAAGAGGAAGCCAAACAGTATAGAGAGTTCCAGAACCAAAAAGCACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAAACCAAGCGGAAGCTGGAACATCTACGACAGgtaagtgacaggtgaggggcatgtgacactgggggcaagggccagcttcc Alignment from Exonerate_coding2genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAG-GAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ctctaccagagatctggcaatcagaaagactgcttctctctttgctccagAGGCAAGGCCACCAACTCAGAGGATGTGAAGGAGCGAAGAGGAAGCCAAACAGTATAGAGAGTTCCAGAACCAAAAAGCACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAAACCAAGCGGAAGCTGGAACATCTACGACAGgtaagtgacaggtgaggggcatgtgacactgggggcaagggccagcttcc Alignment from GeneWise GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAG-GAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG ctctaccagagatctggcaatcagaaagactgcttctctctttgctccagAGGCAAGGCCACCAACTCAGAGGATGTGAAGGAGCGAAGAGGAAGCCAAACAGTATAGAGAGTTCCAGAACCAAAAAGCACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAAACCAAGCGGAAGCTGGAACATCTACGACAGgtaagtgacaggtgaggggcatgtgacactgggggcaagggccagcttcc #### Plcb3_ID1906_25 --> 2 - 2 Original Alignment agGTGACCCCTACACCTCTAGAGGAG-CTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCct ggccccccccaacagctacactaatctgtattttacccatgattcattagagGTAACCCCTACACCTCTAGAAGAGCCTCAGAAGCCACAAGGCTATGGTGAAGCTTCGGAGCCGGCAGGATCAGGACCTGCGGGAGTTGCATAAGAAGCACCAGCGTAAGGCTGTGGCCCTCACACGCCGTCTTCTGGATGGCCTAGCCCAGGCGAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCctgtacgtgtcctgcaacctgttgcaacttatggtgtgtacttacaggaata Alignment from CESAR agGTGACCCCTACACCTCTAGAGGAG-CTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCct ggccccccccaacagctacactaatctgtattttacccatgattcattagagGTAACCCCTACACCTCTAGAAGAGCCTCAGAAGCCACAAGGCTATGGTGAAGCTTCGGAGCCGGCAGGATCAGGACCTGCGGGAGTTGCATAAGAAGCACCAGCGTAAGGCTGTGGCCCTCACACGCCGTCTTCTGGATGGCCTAGCCCAGGCGAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCctgtacgtgtcctgcaacctgttgcaacttatggtgtgtacttacaggaata Alignment from Spaln_aa2Genome AGGTGACCCCTACACCTCTAGAGGAG-CTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ggccccccccaacagctacactaatctgtattttacccatgattcattagAGGTAACCCCTACACCTCTAGAAGAGcCTCAGAAGCCACAAGGCTATGGTGAAGCTTCGGAGCCGGCAGGATCAGGACCTGCGGGAGTTGCATAAGAAGCACCAGCGTAAGGCTGTGGCCCTCACACGCCGTCTTCTGGATGGCCTAGCCCAGGCGAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCTgtacgtgtcctgcaacctgttgcaacttatggtgtgtacttacaggaata Alignment from Spaln_nt2Genome AGGTGACCCCTACACCTCTAGAGGAGC-TCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ggccccccccaacagctacactaatctgtattttacccatgattcattagAGGTAACCCCTACACCTCTAGAAGAGCCTCAGAAGCCACAAGGCTATGGTGAAGCTTCGGAGCCGGCAGGATCAGGACCTGCGGGAGTTGCATAAGAAGCACCAGCGTAAGGCTGTGGCCCTCACACGCCGTCTTCTGGATGGCCTAGCCCAGGCGAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCTgtacgtgtcctgcaacctgttgcaacttatggtgtgtacttacaggaata Alignment from Pairagon AGGTGACCCCTACACCTCTAGAGGAG-CTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ggccccccccaacagctacactaatctgtattttacccatgattcattagAGGTAACCCCTACACCTCTAGAAGAGCCTCAGAAGCCACAAGGCTATGGTGAAGCTTCGGAGCCGGCAGGATCAGGACCTGCGGGAGTTGCATAAGAAGCACCAGCGTAAGGCTGTGGCCCTCACACGCCGTCTTCTGGATGGCCTAGCCCAGGCGAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCTgtacgtgtcctgcaacctgttgcaacttatggtgtgtacttacaggaata Alignment from Exonerate_protein2genome AGGTGACCCCTACACCTCTAGAGGAG-CTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ggccccccccaacagctacactaatctgtattttacccatgattcattagAGGTAACCCCTACACCTCTAGAAGAGCCTCAGAAGCCACAAGGCTATGGTGAAGCTTCGGAGCCGGCAGGATCAGGACCTGCGGGAGTTGCATAAGAAGCACCAGCGTAAGGCTGTGGCCCTCACACGCCGTCTTCTGGATGGCCTAGCCCAGGCGAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCTgtacgtgtcctgcaacctgttgcaacttatggtgtgtacttacaggaata Alignment from Exonerate_coding2genome CAGCATCCTCTCTGAGGTGACCCCTACACCTCTAGAGGAG-CTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ggccccccccaacagctacactaatctgtattttacCCATGATTCATTAGAGGTAACCCCTACACCTCTAGAAGAGCCTCAGAAGCCACAAGGCTATGGTGAAGCTTCGGAGCCGGCAGGATCAGGACCTGCGGGAGTTGCATAAGAAGCACCAGCGTAAGGCTGTGGCCCTCACACGCCGTCTTCTGGATGGCCTAGCCCAGGCGAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCTgtacgtgtcctgcaacctgttgcaacttatggtgtgtacttacaggaata Alignment from GeneWise GAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGCTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ggccccccccaacagctacactaatctgtattttacccatgattcattagaggtaacccctacacctctagAAGAGCCTCAGAAGCCACAAGGCTATGGTGAAGCTTCGGAGCCGGCAGGATCAGGACCTGCGGGAGTTGCATAAGAAGCACCAGCGTAAGGCTGTGGCCCTCACACGCCGTCTTCTGGATGGCCTAGCCCAGGCGAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCTgtacgtgtcctgcaacctgttgcaacttatggtgtgtacttacaggaata #### Plcb3_ID1910_21 --> 2 - 1 Original Alignment gaTACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTG-CTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGg agcagcttggaagtttcagcagagatctcatgcctggcttctgttcctaggaTACCACTATGTTTGCCTGCGAAACGAGGCTAACCAACCTTTGTGCTTGCCTGCCTTGCCTTATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGggtgagtgggacagggcaatggtttatgtggatcttaggtacatggagtct Alignment from CESAR gaTACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTG-CTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGg agcagcttggaagtttcagcagagatctcatgcctggcttctgttcctaggaTACCACTATGTTTGCCTGCGAAACGAGGCTAACCAACCTTTGTGCTTGCCTGCCTTGCCTTATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGggtgagtgggacagggcaatggtttatgtggatcttaggtacatggagtct Alignment from Spaln_aa2Genome GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTG-CTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG agcagcttggaagtttcagcagagatctcatgcctggcttctgttcctagGATACCACTATGTTTGCCTGCGAAACGAGGCTAACCAACCTTTGTGCTTGCCTGCCTTGcCTTATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGGgtgagtgggacagggcaatggtttatgtggatcttaggtacatggagtct Alignment from Spaln_nt2Genome GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTG-CTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG agcagcttggaagtttcagcagagatctcatgcctggcttctgttcctagGATACCACTATGTTTGCCTGCGAAACGAGGCTAACCAACCTTTGTGCTTGCCTGCCTTGCCTTATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGGgtgagtgggacagggcaatggtttatgtggatcttaggtacatggagtct Alignment from Pairagon GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTG-CTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG agcagcttggaagtttcagcagagatctcatgcctggcttctgttcctagGATACCACTATGTTTGCCTGCGAAACGAGGCTAACCAACCTTTGTGCTTGCCTGCCTTGCCTTATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGGgtgagtgggacagggcaatggtttatgtggatcttaggtacatggagtct Alignment from Exonerate_protein2genome GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTG-CTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG agcagcttggaagtttcagcagagatctcatgcctggcttctgttcctagGATACCACTATGTTTGCCTGCGAAACGAGGCTAACCAACCTTTGTGCTTGCCTGCCTTGCCTTATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGGgtgagtgggacagggcaatggtttatgtggatcttaggtacatggagtct Alignment from Exonerate_coding2genome GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTG-CTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG agcagcttggaagtttcagcagagatctcatgcctggcttctgttcctagGATACCACTATGTTTGCCTGCGAAACGAGGCTAACCAACCTTTGTGCTTGCCTGCCTTGCCTTATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGGgtgagtgggacagggcaatggtttatgtggatcttaggtacatggagtct Alignment from GeneWise -------------------------------------------------GGATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTG-CTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG AGCAGCTTGGAAGTTTCAGCAGAGATCTCATGCCTGGCTTCTGTTCCTAGGATACCACTATGTTTGCCTGCGAAACGAGGCTAACCAACCTTTGTGCTTGCCTGCCTTGCCTTATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGGgtgagtgggacagggcaatggtttatgtggatcttaggtacatggagtct #### Plcb3_ID1912_19 --> 0 - 0 Original Alignment GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCC-TTTGACTTCCCCAAG tacaccagatcctgcccattaacttcgtctgccgctcactctgtctgcagGTGATTTCAGGGCAGTTCCTGTCTCACAAGAAGGTGGGTATCTATGTCGAGGTGGACATGTTTGGCCTTCCAGTTGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTGTGGGAGGAAGAACCCCTTTGACTTCCCCAAGgtaaaccccctagtggtggctgatacaccaagactgcaagtctgatagca Alignment from CESAR GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCC-TTTGACTTCCCCAAG tacaccagatcctgcccattaacttcgtctgccgctcactctgtctgcagGTGATTTCAGGGCAGTTCCTGTCTCACAAGAAGGTGGGTATCTATGTCGAGGTGGACATGTTTGGCCTTCCAGTTGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTGTGGGAGGAAGAACCCCTTTGACTTCCCCAAGgtaaaccccctagtggtggctgatacaccaagactgcaagtctgatagca Alignment from Spaln_aa2Genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAA-CCCTTTGACTTCCCCAAG tacaccagatcctgcccattaacttcgtctgccgctcactctgtctgcagGTGATTTCAGGGCAGTTCCTGTCTCACAAGAAGGTGGGTATCTATGTCGAGGTGGACATGTTTGGCCTTCCAGTTGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTGTGGGAGGAAGAAcCCCTTTGACTTCCCCAAGgtaaaccccctagtggtggctgatacaccaagactgcaagtctgatagca Alignment from Spaln_nt2Genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCC-TTTGACTTCCCCAAG tacaccagatcctgcccattaacttcgtctgccgctcactctgtctgcagGTGATTTCAGGGCAGTTCCTGTCTCACAAGAAGGTGGGTATCTATGTCGAGGTGGACATGTTTGGCCTTCCAGTTGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTGTGGGAGGAAGAACCCCTTTGACTTCCCCAAGgtaaaccccctagtggtggctgatacaccaagactgcaagtctgatagca Alignment from Pairagon GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAA-CCCTTTGACTTCCCCAAG tacaccagatcctgcccattaacttcgtctgccgctcactctgtctgcagGTGATTTCAGGGCAGTTCCTGTCTCACAAGAAGGTGGGTATCTATGTCGAGGTGGACATGTTTGGCCTTCCAGTTGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTGTGGGAGGAAGAACCCCTTTGACTTCCCCAAGgtaaaccccctagtggtggctgatacaccaagactgcaagtctgatagca Alignment from Exonerate_protein2genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAA-CCCTTTGACTTCCCCAAG tacaccagatcctgcccattaacttcgtctgccgctcactctgtctgcagGTGATTTCAGGGCAGTTCCTGTCTCACAAGAAGGTGGGTATCTATGTCGAGGTGGACATGTTTGGCCTTCCAGTTGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTGTGGGAGGAAGAACCCCTTTGACTTCCCCAAGgtaaaccccctagtggtggctgatacaccaagactgcaagtctgatagca Alignment from Exonerate_coding2genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAA-CCCTTTGACTTCCCCAAG tacaccagatcctgcccattaacttcgtctgccgctcactctgtctgcagGTGATTTCAGGGCAGTTCCTGTCTCACAAGAAGGTGGGTATCTATGTCGAGGTGGACATGTTTGGCCTTCCAGTTGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTGTGGGAGGAAGAACCCCTTTGACTTCCCCAAGgtaaaccccctagtggtggctgatacaccaagactgcaagtctgatagca Alignment from GeneWise GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAG-GAACCCTTTGACTTCCCCAAG tacaccagatcctgcccattaacttcgtctgccgctcactctgtctgcagGTGATTTCAGGGCAGTTCCTGTCTCACAAGAAGGTGGGTATCTATGTCGAGGTGGACATGTTTGGCCTTCCAGTTGATACAAGATGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTGTGGGAGGAAGAACCCCTTTGACTTCCCCAAGgtaaaccccctagtggtggctgatacaccaagactgcaagtctgatagca #### Plcb3_ID1914_17 --> 1 - 1 Original Alignment aTACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGA-GTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGg ctagaagatgatgcttctttttctttgatctaattttcctgtattttcaggTACAACAGACAGCAGCTCAGCCGGATCTACACTAAGGGCAAACAGCGTGGACTCTTCTAACTACATGCCTCATCTCTTTTGGAATGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGggtgagctctagccctatcttagggatttttggcggataaagcaacttgac Alignment from CESAR aTACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGA-GTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGg ctagaagatgatgcttctttttctttgatctaattttcctgtattttcaggTACAACAGACAGCAGCTCAGCCGGATCTACACTAAGGGCAAACAGCGTGGACTCTTCTAACTACATGCCTCATCTCTTTTGGAATGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGggtgagctctagccctatcttagggatttttggcggataaagcaacttgac Alignment from Spaln_aa2Genome ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGC-ACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG ctagaagatgatgcttctttttctttgatctaattttcctgtattttcagGTACAACAGACAGCAGCTCAGCCGGATCTACACTAAGGGCaAACAGCGTGGACTCTTCTAACTACATGCCTCATCTCTTTTGGAATGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGGgtgagctctagccctatcttagggatttttggcggataaagcaacttgac Alignment from Spaln_nt2Genome ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACAC-GAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG ctagaagatgatgcttctttttctttgatctaattttcctgtattttcagGTACAACAGACAGCAGCTCAGCCGGATCTACACTAAGGGCAAACAGCGTGGACTCTTCTAACTACATGCCTCATCTCTTTTGGAATGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGGgtgagctctagccctatcttagggatttttggcggataaagcaacttgac Alignment from Pairagon ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACAC-GAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG ctagaagatgatgcttctttttctttgatctaattttcctgtattttcagGTACAACAGACAGCAGCTCAGCCGGATCTACACTAAGGGCAAACAGCGTGGACTCTTCTAACTACATGCCTCATCTCTTTTGGAATGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGGgtgagctctagccctatcttagggatttttggcggataaagcaacttgac Alignment from Exonerate_protein2genome ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGA-GTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG ctagaagatgatgcttctttttctttgatctaattttcctgtattttcagGTACAACAGACAGCAGCTCAGCCGGATCTACACTAAGGGCAAACAGCGTGGACTCTTCTAACTACATGCCTCATCTCTTTTGGAATGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGGgtgagctctagccctatcttagggatttttggcggataaagcaacttgac Alignment from Exonerate_coding2genome ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGA-GTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG ctagaagatgatgcttctttttctttgatctaattttcctgtattttcagGTACAACAGACAGCAGCTCAGCCGGATCTACACTAAGGGCAAACAGCGTGGACTCTTCTAACTACATGCCTCATCTCTTTTGGAATGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGGgtgagctctagccctatcttagggatttttggcggataaagcaacttgac Alignment from GeneWise ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGC-ACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG ctagaagatgatgcttctttttctttgatctaattttcctgtattttcagGTACAACAGACAGCAGCTCAGCCGGATCTACACTAAGGGCAAACAGCGTGGACTCTTCTAACTACATGCCTCATCTCTTTTGGAATGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGGgtgagctctagccctatcttagggatttttggcggataaagcaacttgac #### Plcb3_ID1915_16 --> 2 - 2 Original Alignment aaAGGAACAAGTGCTTCGAGATG-TCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGga cagggagctgggtctgccaggccatggcaggcttgctctatgtcttgcagaaAGGAACAAGTGCTTTAGGATGCTCATCCTTCGTGGAGACCAAAGCAATGGACCAACTGACCAAGAGTCCTATGGAGTTTGTGgagtgaggtcaccaaacaccatggctagtgtggagccaggagtgccacctgg Alignment from CESAR aaAGGAACAAGTGCTTCGAGATG-TCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGga cagggagctgggtctgccaggccatggcaggcttgctctatgtcttgcagaaAGGAACAAGTGCTTTAGGATGCTCATCCTTCGTGGAGACCAAAGCAATGGACCAACTGACCAAGAGTCCTATGGAGTTTGTGgagtgaggtcaccaaacaccatggctagtgtggagccaggagtgccacctgg Alignment from Spaln_aa2Genome AAAGGAACAAGTGCTTCGAGATG-TCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA cagggagctgggtctgccaggccatggcaggcttgctctatgtcttgcagAAAGGAACAAGTGCTTTAGGATGcTCATCCTTCGTGGAGACCAAAGCAATGGACCAACTGACCAAGAGTCCTATGGAGTTTGTGGAgtgaggtcaccaaacaccatggctagtgtggagccaggagtgccacctgg Alignment from Spaln_nt2Genome AAAGGAACAAGTGCTTCGAGATG-TCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA cagggagctgggtctgccaggccatggcaggcttgctctatgtcttgcagAAAGGAACAAGTGCTTTAGGATGCTCATCCTTCGTGGAGACCAAAGCAATGGACCAACTGACCAAGAGTCCTATGGAGTTTGTGGAgtgaggtcaccaaacaccatggctagtgtggagccaggagtgccacctgg Alignment from Pairagon AAAGGAACAAGTGCTTCGAGATG-TCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA cagggagctgggtctgccaggccatggcaggcttgctctatgtcttgcagAAAGGAACAAGTGCTTTAGGATGCTCATCCTTCGTGGAGACCAAAGCAATGGACCAACTGACCAAGAGTCCTATGGAGTTTGTGGAgtgaggtcaccaaacaccatggctagtgtggagccaggagtgccacctgg Alignment from Exonerate_protein2genome AAAGGAACAAGTGCTTCGAGATG-TCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA cagggagctgggtctgccaggccatggcaggcttgctctatgtcttgcagAAAGGAACAAGTGCTTTAGGATGCTCATCCTTCGTGGAGACCAAAGCAATGGACCAACTGACCAAGAGTCCTATGGAGTTTGTGGAgtgaggtcaccaaacaccatggctagtgtggagccaggagtgccacctgg Alignment from Exonerate_coding2genome AAAGGAACAAGTGCTTCGAGATG-TCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA cagggagctgggtctgccaggccatggcaggcttgctctatgtcttgcagAAAGGAACAAGTGCTTTAGGATGCTCATCCTTCGTGGAGACCAAAGCAATGGACCAACTGACCAAGAGTCCTATGGAGTTTGTGGAgtgaggtcaccaaacaccatggctagtgtggagccaggagtgccacctgg Alignment from GeneWise --------------------------------------------------AAAAGGAACAAGTGCTTCGAGATGTCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA CAGGGAGCTGGGTCTGCCAGGCCATGGCAGGCTTGCTCTATGTCTTGCAGAAAGGAACAAGTGCTTTAGGATGCTCATCCTTCGTGGAGACCAAAGCAATGGACCAACTGACCAAGAGTCCTATGGAGTTTGTGGAgtgaggtcaccaaacaccatggctagtgtggagccaggagtgccacctgg #### Plcb3_ID1918_13 --> 0 - 1 Original Alignment CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGT-GTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTg aggtgaagggagctcgattgcctaggtcctgccatcttgcatgcctccagCTATCTGAGGGTATCCCCCTGCCTAGTCCACAGGACCTTATG---GGTATTCTGGTGAAGAATAGGAAGCGACATCGGCCCAGCACAGGTCGTCCCTGACAGCTCAGTACGCAAGCAGCCTCTGGAACTGAGCAACTTGGCACTGAGTGAGAGCTCCGCTGCCACAGAGCCCTCATCACCTCAGCTCggcaagtgtcctgtcctgacttctacccctgaacctaatgatatattcacc Alignment from CESAR CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGT-GTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTg aggtgaagggagctcgattgcctaggtcctgccatcttgcatgcctccagCTATCTGAGGGTATCCCCCTGCCTAGTCCACAGGACCTTATGGGT---ATTCTGGTGAAGAATAGGAAGCGACATCGGCCCAGCACAGGTCGTCCCTGACAGCTCAGTACGCAAGCAGCCTCTGGAACTGAGCAACTTGGCACTGAGTGAGAGCTCCGCTGCCACAGAGCCCTCATCACCTCAGCTCggcaagtgtcctgtcctgacttctacccctgaacctaatgatatattcacc Alignment from Spaln_aa2Genome CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTC-CCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG aggtgaagggagctcgattgcctaggtcctgccatcttgcatgcctccagCTATCTGAGGGTATCCCCCTGCCTAGTCCACAGGACCTTATGGGT---ATTCTGGTGAAGAATAGGAAGCGACATCGGCCCAGCACAGGTCGTcCCTGACAGCTCAGTACGCAAGCAGCCTCTGGAACTGAGCAACTTGGCACTGAGTGAGAGCTCCGCTGCCACAGAGCCCTCATCACCTCAGCTCGgcaagtgtcctgtcctgacttctacccctgaacctaatgatatattcacc Alignment from Spaln_nt2Genome CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGT-GTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG aggtgaagggagctcgattgcctaggtcctgccatcttgcatgcctccagCTATCTGAGGGTATCCCCCTGCCTAGTCCACAGGACCTTATGG---GTATTCTGGTGAAGAATAGGAAGCGACATCGGCCCAGCACAGGTCGTCCCTGACAGCTCAGTACGCAAGCAGCCTCTGGAACTGAGCAACTTGGCACTGAGTGAGAGCTCCGCTGCCACAGAGCCCTCATCACCTCAGCTCGgcaagtgtcctgtcctgacttctacccctgaacctaatgatatattcacc Alignment from Pairagon CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGT-GTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG aggtgaagggagctcgattgcctaggtcctgccatcttgcatgcctccagCTATCTGAGGGTATCCCCCTGCCTAGTCCACAGGACCTTATGG---GTATTCTGGTGAAGAATAGGAAGCGACATCGGCCCAGCACAGGTCGTCCCTGACAGCTCAGTACGCAAGCAGCCTCTGGAACTGAGCAACTTGGCACTGAGTGAGAGCTCCGCTGCCACAGAGCCCTCATCACCTCAGCTCGgcaagtgtcctgtcctgacttctacccctgaacctaatgatatattcacc Alignment from Exonerate_protein2genome CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGT-GTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG aggtgaagggagctcgattgcctaggtcctgccatcttgcatgcctccagCTATCTGAGGGTATCCCCCTGCCTAGTCCACAGGACCTTATGGGT---ATTCTGGTGAAGAATAGGAAGCGACATCGGCCCAGCACAGGTCGTCCCTGACAGCTCAGTACGCAAGCAGCCTCTGGAACTGAGCAACTTGGCACTGAGTGAGAGCTCCGCTGCCACAGAGCCCTCATCACCTCAGCTCGgcaagtgtcctgtcctgacttctacccctgaacctaatgatatattcacc Alignment from Exonerate_coding2genome CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGT-GTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG aggtgaagggagctcgattgcctaggtcctgccatcttgcatgcctccagCTATCTGAGGGTATCCCCCTGCCTAGTCCACAGGACCTTATGGGT---ATTCTGGTGAAGAATAGGAAGCGACATCGGCCCAGCACAGGTCGTCCCTGACAGCTCAGTACGCAAGCAGCCTCTGGAACTGAGCAACTTGGCACTGAGTGAGAGCTCCGCTGCCACAGAGCCCTCATCACCTCAGCTCGgcaagtgtcctgtcctgacttctacccctgaacctaatgatatattcacc Alignment from GeneWise CTATCTGCGGGCATCCCCCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGT-GTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTGGGTCC- aggtgaagggagctcgattgcctaggtcctgccatcttgcatgcctccagCTATCTGAGGGTATCCCCCTGCCTAGTCCACAGGACCTTATGGGT---ATTCTGGTGAAGAATAGGAAGCGACATCGGCCCAGCACAGGTCGTCCCTGACAGCTCAGTACGCAAGCAGCCTCTGGAACTGAGCAACTTGGCACTGAGTGAGAGCTCCGCTGCCACAGAGCCCTCATCACCTCAGCTCGGCAAGTgtcctgtcctgacttctacccctgaacctaatgatatattcacc #### Plcb3_ID1919_12 --> 1 - 0 Original Alignment gGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTC-ATTGACCCTCTCGACAAATACCCG ataggcctctgacccctgcagagctccgtcaaaagtttcttatttttaagaGCAAAGCAGCAC---AAGATGGCTGAATACTGCCGCTCTATCTTTGGGGATGCACTACTCCATTGACCCTCTTGACAAATACCCAgtgagtggaagtttggactggatccagggcatatgaaggtgaagggagct Alignment from CESAR gGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTC-ATTGACCCTCTCGACAAATACCCG ataggcctctgacccctgcagagctccgtcaaaagtttcttatttttaagaGCAAAGCAGCAC---AAGATGGCTGAATACTGCCGCTCTATCTTTGGGGATGCACTACTCCATTGACCCTCTTGACAAATACCCAgtgagtggaagtttggactggatccagggcatatgaaggtgaagggagct Alignment from Spaln_aa2Genome GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTC-ATTGACCCTCTCGACAAATACCCG ataggcctctgacccctgcagagctccgtcaaaagtttcttatttttaagAGCAAAGCAGCAC---AAGATGGCTGAATACTGCCGCTCTATCTTTGGGGATGCACTACTCcATTGACCCTCTTGACAAATACCCAgtgagtggaagtttggactggatccagggcatatgaaggtgaagggagct Alignment from Spaln_nt2Genome GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCT-CATTGACCCTCTCGACAAATACCCG ataggcctctgacccctgcagagctccgtcaaaagtttcttatttttaagAGCAAAGCAGCA---CAAGATGGCTGAATACTGCCGCTCTATCTTTGGGGATGCACTACTCCATTGACCCTCTTGACAAATACCCAgtgagtggaagtttggactggatccagggcatatgaaggtgaagggagct Alignment from Pairagon GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCT-CATTGACCCTCTCGACAAATACCCG ataggcctctgacccctgcagagctccgtcaaaagtttcttatttttaagAGCAAAGCAGCA---CAAGATGGCTGAATACTGCCGCTCTATCTTTGGGGATGCACTACTCCATTGACCCTCTTGACAAATACCCAgtgagtggaagtttggactggatccagggcatatgaaggtgaagggagct Alignment from Exonerate_protein2genome GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTC-ATTGACCCTCTCGACAAATACCCG ataggcctctgacccctgcagagctccgtcaaaagtttcttatttttaagAGCAAAGCAGCAC---AAGATGGCTGAATACTGCCGCTCTATCTTTGGGGATGCACTACTCCATTGACCCTCTTGACAAATACCCAgtgagtggaagtttggactggatccagggcatatgaaggtgaagggagct Alignment from Exonerate_coding2genome GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTGCTC-ATTGACCCTCTCGACAAATACCCG ataggcctctgacccctgcagagctccgtcaaaagtttcttatttttaagAGCAAAGCAGCAC---AAGATGGCTGAATACTGCCGCTCTATCTTTGGGGATGCACTACTCCATTGACCCTCTTGACAAATACCCAgtgagtggaagtttggactggatccagggcatatgaaggtgaagggagct Alignment from GeneWise CAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGCTG-CTCATTGACCCTCTCGACAAATACCCG ataggcctctgacccctgcagagctccgtcaaaagtttcttatttttaagagcaaagCAGCACAAGATGGCTGAATACTGCCGCTCTATCTTTGGGGATGCACTACTCCATTGACCCTCTTGACAAATACCCAgtgagtggaagtttggactggatccagggcatatgaaggtgaagggagct #### Plcb3_ID1924_7 --> 1 - 2 Original Alignment cATTCTGAAGATGTTCTCGGCGGAC-AAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAgt tttctgctgcctgtccatccattgacccagtgatccttttctgcttccagcATTCTGAAGATGTTCTCGGCGGACCAAGAAGCGGGTGGAGACTGCGCTGGAGTCCTGTGGCCTCAACTTAAACCGAgtgtaagcgtcagggccagggtgtgggtggggcaggatgggctattgcaata Alignment from CESAR cATTCTGAAGATGTTCTCGGCGGAC-AAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAgt tttctgctgcctgtccatccattgacccagtgatccttttctgcttccagcATTCTGAAGATGTTCTCGGCGGACCAAGAAGCGGGTGGAGACTGCGCTGGAGTCCTGTGGCCTCAACTTAAACCGAgtgtaagcgtcagggccagggtgtgggtggggcaggatgggctattgcaata Alignment from Spaln_aa2Genome CATTCTGAAGATGTTCTCGGCGGAC-AAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT tttctgctgcctgtccatccattgacccagtgatccttttctgcttccagCATTCTGAAGATGTTCTCGGCGGACcAAGAAGCGGGTGGAGACTGCGCTGGAGTCCTGTGGCCTCAACTTAAACCGAGTgtaagcgtcagggccagggtgtgggtggggcaggatgggctattgcaata Alignment from Spaln_nt2Genome CATTCTGAAGATGTTCTCGGCGGA-CAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT tttctgctgcctgtccatccattgacccagtgatccttttctgcttccagCATTCTGAAGATGTTCTCGGCGGACCAAGAAGCGGGTGGAGACTGCGCTGGAGTCCTGTGGCCTCAACTTAAACCGAGTgtaagcgtcagggccagggtgtgggtggggcaggatgggctattgcaata Alignment from Pairagon CATTCTGAAGATGTTCTCGGCGGA-CAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT tttctgctgcctgtccatccattgacccagtgatccttttctgcttccagCATTCTGAAGATGTTCTCGGCGGACCAAGAAGCGGGTGGAGACTGCGCTGGAGTCCTGTGGCCTCAACTTAAACCGAGTgtaagcgtcagggccagggtgtgggtggggcaggatgggctattgcaata Alignment from Exonerate_protein2genome CATTCTGAAGATGTTCTCGGCGGAC-AAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT tttctgctgcctgtccatccattgacccagtgatccttttctgcttccagCATTCTGAAGATGTTCTCGGCGGACCAAGAAGCGGGTGGAGACTGCGCTGGAGTCCTGTGGCCTCAACTTAAACCGAGTgtaagcgtcagggccagggtgtgggtggggcaggatgggctattgcaata Alignment from Exonerate_coding2genome CATTCTGAAGATGTTCTCGGCGGAC-AAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT tttctgctgcctgtccatccattgacccagtgatccttttctgcttccagCATTCTGAAGATGTTCTCGGCGGACCAAGAAGCGGGTGGAGACTGCGCTGGAGTCCTGTGGCCTCAACTTAAACCGAGTgtaagcgtcagggccagggtgtgggtggggcaggatgggctattgcaata Alignment from GeneWise CATTCTGAAGATGTTCTCGGCGGAC-AAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGTGGCCTCAACTTCAACCGAGT tttctgctgcctgtccatccattgacccagtgatccttttctgcttccagCATTCTGAAGATGTTCTCGGCGGACCAAGAAGCGGGTGGAGACTGCGCTGGAGTCCTGTGGCCTCAACTTAAACCGAGTgtaagcgtcagggccagggtgtgggtggggcaggatgggctattgcaata #### Plcb3_ID1926_5 --> 0 - 2 Original Alignment GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCT-CAGAACGCCTCCCGGAACACCTTCCTGCGGAAAgc aacccctctgcccccttctcccagtctctcttttctccccctctcatcagGTATGGTCAGAGGAGTTGTTTAAACTAGCCATGAACATATTGGCCCCAGAATGCCTCCCAGAACACCTTCCTGCGGAAAgcgtatatctgcggctacctagggagtgctgggagttccactgacaagaccc Alignment from CESAR GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCT-CAGAACGCCTCCCGGAACACCTTCCTGCGGAAAgc aacccctctgcccccttctcccagtctctcttttctccccctctcatcagGTATGGTCAGAGGAGTTGTTTAAACTAGCCATGAACATATTGGCCCCAGAATGCCTCCCAGAACACCTTCCTGCGGAAAgcgtatatctgcggctacctagggagtgctgggagttccactgacaagacct Alignment from Spaln_aa2Genome GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCT-CAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC aacccctctgcccccttctcccagtctctcttttctccccctctcatcagGTATGGTCAGAGGAGTTGTTTAAACTAGCCATGAACATATTGGCCcCAGAATGCCTCCCAGAACACCTTCCTGCGGAAAGCgtatatctgcggctacctagggagtgctgggagttccactgacaagaccc Alignment from Spaln_nt2Genome GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCTC-AGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC aacccctctgcccccttctcccagtctctcttttctccccctctcatcagGTATGGTCAGAGGAGTTGTTTAAACTAGCCATGAACATATTGGCCCCAGAATGCCTCCCAGAACACCTTCCTGCGGAAAGCgtatatctgcggctacctagggagtgctgggagttccactgacaagaccc Alignment from Pairagon GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGG-CTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC aacccctctgcccccttctcccagtctctcttttctccccctctcatcagGTATGGTCAGAGGAGTTGTTTAAACTAGCCATGAACATATTGGCCCCAGAATGCCTCCCAGAACACCTTCCTGCGGAAAGCgtatatctgcggctacctagggagtgctgggagttccactgacaagaccc Alignment from Exonerate_protein2genome GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCT-CAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC aacccctctgcccccttctcccagtctctcttttctccccctctcatcagGTATGGTCAGAGGAGTTGTTTAAACTAGCCATGAACATATTGGCCCCAGAATGCCTCCCAGAACACCTTCCTGCGGAAAGCgtatatctgcggctacctagggagtgctgggagttccactgacaagaccc Alignment from Exonerate_coding2genome GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCT-CAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC aacccctctgcccccttctcccagtctctcttttctccccctctcatcagGTATGGTCAGAGGAGTTGTTTAAACTAGCCATGAACATATTGGCCCCAGAATGCCTCCCAGAACACCTTCCTGCGGAAAGCgtatatctgcggctacctagggagtgctgggagttccactgacaagaccc Alignment from GeneWise GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTG-GCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC aacccctctgcccccttctcccagtctctcttttctccccctctcatcagGTATGGTCAGAGGAGTTGTTTAAACTAGCCATGAACATATTGGCCCCAGAATGCCTCCCAGAACACCTTCCTGCGGAAAGCgtatatctgcggctacctagggagtgctgggagttccactgacaagaccc #### Pola2_ID1324_16 --> 1 - 2 Original Alignment cTCTTCCGGGACGTCAGACAGATTCAGCCGAGTC-CTTAAGCATATCCTGACGCAGAGAag tgactagtaacctggtctatccccccccgtttgacctgtttcccccacagcTCTTCAGGGACGTCAGACAGATTCAGCAGAGTCCCTTAAGCATATTCTGACACAGAGAaggtgagtggtgtcctgccaaccccaagaagaatggaccatatttattagca Alignment from CESAR cTCTTCCGGGACGTCAGACAGATTCAGCCGAGTC-CTTAAGCATATCCTGACGCAGAGAag tgactagtaacctggtctatccccccccgtttgacctgtttcccccacagcTCTTCAGGGACGTCAGACAGATTCAGCAGAGTCCCTTAAGCATATTCTGACACAGAGAaggtgagtggtgtcctgccaaccccaagaagaatggaccatatttattagca Alignment from Spaln_aa2Genome CTCTTCCGGGACGTCAGACAGATTCAGCCGAGTC-CTTAAGCATATCCTGACGCAGAGAAG tgactagtaacctggtctatccccccccgtttgacctgtttcccccacagCTCTTCAGGGACGTCAGACAGATTCAGCAGAGTCcCTTAAGCATATTCTGACACAGAGAAGgtgagtggtgtcctgccaaccccaagaagaatggaccatatttattagca Alignment from Spaln_nt2Genome CTCTTCCGGGACGTCAGACAGATTCAGCCGAGTC-CTTAAGCATATCCTGACGCAGAGAAG tgactagtaacctggtctatccccccccgtttgacctgtttcccccacagCTCTTCAGGGACGTCAGACAGATTCAGCAGAGTCCCTTAAGCATATTCTGACACAGAGAAGgtgagtggtgtcctgccaaccccaagaagaatggaccatatttattagca Alignment from Pairagon CTCTTCCGGGACGTCAGACAGATTCAGCCGAGT-CCTTAAGCATATCCTGACGCAGAGAAG tgactagtaacctggtctatccccccccgtttgacctgtttcccccacagCTCTTCAGGGACGTCAGACAGATTCAGCAGAGTCCCTTAAGCATATTCTGACACAGAGAAGgtgagtggtgtcctgccaaccccaagaagaatggaccatatttattagca Alignment from Exonerate_protein2genome CTCTTCCGGGACGTCAGACAGATTCAGCCGAGTC-CTTAAGCATATCCTGACGCAGAGAAG tgactagtaacctggtctatccccccccgtttgacctgtttcccccacagCTCTTCAGGGACGTCAGACAGATTCAGCAGAGTCCCTTAAGCATATTCTGACACAGAGAAGgtgagtggtgtcctgccaaccccaagaagaatggaccatatttattagca Alignment from Exonerate_coding2genome CTCTTCCGGGACGTCAGACAGATTCAGCCGAGTC-CTTAAGCATATCCTGACGCAGAGAAG tgactagtaacctggtctatccccccccgtttgacctgtttcccccacagCTCTTCAGGGACGTCAGACAGATTCAGCAGAGTCCCTTAAGCATATTCTGACACAGAGAAGgtgagtggtgtcctgccaaccccaagaagaatggaccatatttattagca Alignment from GeneWise CTCTTCCGGGACGTCAGACAGATTCAGCCGA-GTCCTTAAGCATATCCTGACGCAGAGAAG tgactagtaacctggtctatccccccccgtttgacctgtttcccccacagCTCTTCAGGGACGTCAGACAGATTCAGCAGAGTCCCTTAAGCATATTCTGACACAGAGAAGgtgagtggtgtcctgccaaccccaagaagaatggaccatatttattagca #### Pold4_ID437_2 --> 2 - 1 Original Alignment ggGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTT-GACCTGGCCTGGCAGTATGGGCCTTGTACAg gtagtgcaaaggtctagatgagcatgaggtcacttttctttccaccccagggGAAGACACCCAGTCCCTCAGCCAAGAGGAAACTGAGCTGGAGCTGTTGCGGCAGTTTCGACTTGGCCTGGCAGTATGGGCCTTGTACAggtaagtaccccccatttccaccctcgaatcagtctttcataaggtacttt Alignment from CESAR ggGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTT-GACCTGGCCTGGCAGTATGGGCCTTGTACAg gtagtgcaaaggtctagatgagcatgaggtcacttttctttccaccccagggGAAGACACCCAGTCCCTCAGCCAAGAGGAAACTGAGCTGGAGCTGTTGCGGCAGTTTCGACTTGGCCTGGCAGTATGGGCCTTGTACAggtaagtaccccccatttccaccctcgaatcagtctttcataaggtacttt Alignment from Spaln_aa2Genome GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTT-GACCTGGCCTGGCAGTATGGGCCTTGTACAG gtagtgcaaaggtctagatgagcatgaggtcacttttctttccaccccagGGGAAGACACCCAGTCCCTCAGCCAAGAGGAAACTGAGCTGGAGCTGTTGCGGCAGTTTcGACTTGGCCTGGCAGTATGGGCCTTGTACAGgtaagtaccccccatttccaccctcgaatcagtctttcataaggtacttt Alignment from Spaln_nt2Genome GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTT-GACCTGGCCTGGCAGTATGGGCCTTGTACAG gtagtgcaaaggtctagatgagcatgaggtcacttttctttccaccccagGGGAAGACACCCAGTCCCTCAGCCAAGAGGAAACTGAGCTGGAGCTGTTGCGGCAGTTTCGACTTGGCCTGGCAGTATGGGCCTTGTACAGgtaagtaccccccatttccaccctcgaatcagtctttcataaggtacttt Alignment from Pairagon GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTT-GACCTGGCCTGGCAGTATGGGCCTTGTACAG gtagtgcaaaggtctagatgagcatgaggtcacttttctttccaccccagGGGAAGACACCCAGTCCCTCAGCCAAGAGGAAACTGAGCTGGAGCTGTTGCGGCAGTTTCGACTTGGCCTGGCAGTATGGGCCTTGTACAGgtaagtaccccccatttccaccctcgaatcagtctttcataaggtacttt Alignment from Exonerate_protein2genome GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAG-TTTGACCTGGCCTGGCAGTATGGGCCTTGTACAG gtagtgcaaaggtctagatgagcatgaggtcacttttctttccaccccagGGGAAGACACCCAGTCCCTCAGCCAAGAGGAAACTGAGCTGGAGCTGTTGCGGCAGTTTCGACTTGGCCTGGCAGTATGGGCCTTGTACAGgtaagtaccccccatttccaccctcgaatcagtctttcataaggtacttt Alignment from Exonerate_coding2genome GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAG-TTTGACCTGGCCTGGCAGTATGGGCCTTGTACAG gtagtgcaaaggtctagatgagcatgaggtcacttttctttccaccccagGGGAAGACACCCAGTCCCTCAGCCAAGAGGAAACTGAGCTGGAGCTGTTGCGGCAGTTTCGACTTGGCCTGGCAGTATGGGCCTTGTACAGgtaagtaccccccatttccaccctcgaatcagtctttcataaggtacttt Alignment from GeneWise GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGG-CAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAG gtagtgcaaaggtctagatgagcatgaggtcacttttctttccaccccagGGGAAGACACCCAGTCCCTCAGCCAAGAGGAAACTGAGCTGGAGCTGTTGCGGCAGTTTCGACTTGGCCTGGCAGTATGGGCCTTGTACAGgtaagtaccccccatttccaccctcgaatcagtctttcataaggtacttt #### Poll_ID9484_3 --> 1 - 0 Original Alignment gTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCT-GTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG aaacactcatactttttgaataggacatcactattgctcctttgctctaggTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGTACTCAGCGGGATTTACCCAGAACCACCCTCTCTCTTTCCCCTCCCCATACCAGAGCACGTATCTCCTCCCCCAACAGCGGAAAAGCCATCCAGAACTCGAGCCCAGgtacctagcatctcagtccagggtgctgatcgcagaaaatgaaaggacta Alignment from CESAR gTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCT-GTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG aaacactcatactttttgaataggacatcactattgctcctttgctctaggTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGTACTCAGCGGGATTTACCCAGAACCACCCTCTCTCTTTCCCCTCCCCATACCAGAGCACGTATCTCCTCCCCCAACAGCGGAAAAGCCATCCAGAACTCGAGCCCAGgtacctagcatctcagtccagggtgctgatcgcagaaaatgaaaggacta Alignment from Spaln_aa2Genome GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCT-GTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG aaacactcatactttttgaataggacatcactattgctcctttgctctagGTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGTACTCAGCGGGATTTACCCAGAACCACCCTCTCTCTTTCCCCTCCCCATACCAGAGCAcGTATCTCCTCCCCCAACAGCGGAAAAGCCATCCAGAACTCGAGCCCAGgtacctagcatctcagtccagggtgctgatcgcagaaaatgaaaggacta Alignment from Spaln_nt2Genome GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCT-GTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG aaacactcatactttttgaataggacatcactattgctcctttgctctagGTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGTACTCAGCGGGATTTACCCAGAACCACCCTCTCTCTTTCCCCTCCCCATACCAGAGCACGTATCTCCTCCCCCAACAGCGGAAAAGCCATCCAGAACTCGAGCCCAGgtacctagcatctcagtccagggtgctgatcgcagaaaatgaaaggacta Alignment from Pairagon GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGC-TGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG aaacactcatactttttgaataggacatcactattgctcctttgctctagGTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGTACTCAGCGGGATTTACCCAGAACCACCCTCTCTCTTTCCCCTCCCCATACCAGAGCACGTATCTCCTCCCCCAACAGCGGAAAAGCCATCCAGAACTCGAGCCCAGgtacctagcatctcagtccagggtgctgatcgcagaaaatgaaaggacta Alignment from Exonerate_protein2genome GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCT-GTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG aaacactcatactttttgaataggacatcactattgctcctttgctctagGTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGTACTCAGCGGGATTTACCCAGAACCACCCTCTCTCTTTCCCCTCCCCATACCAGAGCACGTATCTCCTCCCCCAACAGCGGAAAAGCCATCCAGAACTCGAGCCCAGgtacctagcatctcagtccagggtgctgatcgcagaaaatgaaaggacta Alignment from Exonerate_coding2genome GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGAGCT-GTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG aaacactcatactttttgaataggacatcactattgctcctttgctctagGTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGTACTCAGCGGGATTTACCCAGAACCACCCTCTCTCTTTCCCCTCCCCATACCAGAGCACGTATCTCCTCCCCCAACAGCGGAAAAGCCATCCAGAACTCGAGCCCAGgtacctagcatctcagtccagggtgctgatcgcagaaaatgaaaggacta Alignment from GeneWise GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCAGA-GCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG aaacactcatactttttgaataggacatcactattgctcctttgctctagGTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGTACTCAGCGGGATTTACCCAGAACCACCCTCTCTCTTTCCCCTCCCCATACCAGAGCACGTATCTCCTCCCCCAACAGCGGAAAAGCCATCCAGAACTCGAGCCCAGgtacctagcatctcagtccagggtgctgatcgcagaaaatgaaaggacta #### Ppp1ca_ID409_3 --> 2 - 1 Original Alignment gtGACATCCATGGCCAGTACTATGACCTT-CTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAt tcttgtacttacttagtgtacttccttacttttatatcttctgtctcaaggcGACATCCATGGACAGTACTACGACCTTCCTACACCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCCTGGGGGATTATGTAGACCGGGGCAAGCAATCCTTGGAGACCATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATTTCTATGTACTTCGCGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCGtgtgatagctttgaattctgccatctgcccagaggtacattcctggctctt Alignment from CESAR gtGACATCCATGGCCAGTACTATGACCTT-CTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAt tcttgtacttacttagtgtacttccttacttttatatcttctgtctcaaggcGACATCCATGGACAGTACTACGACCTTCCTACACCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCCTGGGGGATTATGTAGACCGGGGCAAGCAATCCTTGGAGACCATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATTTCTATGTACTTCGCGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCGtgtgatagctttgaattctgccatctgcccagaggtacattcctggctctt Alignment from Spaln_aa2Genome GTGACATCCATGGCCAGTACTATGACCTT-CTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT tcttgtacttacttagtgtacttccttacttttatatcttctgtctcaagGCGACATCCATGGACAGTACTACGACCTTcCTACACCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCCTGGGGGATTATGTAGACCGGGGCAAGCAATCCTTGGAGACCATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATTTCTATGTACTTCGCGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCGTgtgatagctttgaattctgccatctgcccagaggtacattcctggctctt Alignment from Spaln_nt2Genome GTGACATCCATGGCCAGTACTATGACCTT-CTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT tcttgtacttacttagtgtacttccttacttttatatcttctgtctcaagGCGACATCCATGGACAGTACTACGACCTTCCTACACCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCCTGGGGGATTATGTAGACCGGGGCAAGCAATCCTTGGAGACCATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATTTCTATGTACTTCGCGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCGTgtgatagctttgaattctgccatctgcccagaggtacattcctggctctt Alignment from Pairagon GTGACATCCATGGCCAGTACTATGACCTT-CTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT tcttgtacttacttagtgtacttccttacttttatatcttctgtctcaagGCGACATCCATGGACAGTACTACGACCTTCCTACACCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCCTGGGGGATTATGTAGACCGGGGCAAGCAATCCTTGGAGACCATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATTTCTATGTACTTCGCGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCGTgtgatagctttgaattctgccatctgcccagaggtacattcctggctctt Alignment from Exonerate_protein2genome GTGACATCCATGGCCAGTACTATGACCTT-CTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT tcttgtacttacttagtgtacttccttacttttatatcttctgtctcaagGCGACATCCATGGACAGTACTACGACCTTCCTACACCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCCTGGGGGATTATGTAGACCGGGGCAAGCAATCCTTGGAGACCATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATTTCTATGTACTTCGCGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCGTgtgatagctttgaattctgccatctgcccagaggtacattcctggctctt Alignment from Exonerate_coding2genome GTGACATCCATGGCCAGTACTATGACCTT-CTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT tcttgtacttacttagtgtacttccttacttttatatcttctgtctcaagGCGACATCCATGGACAGTACTACGACCTTCCTACACCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCCTGGGGGATTATGTAGACCGGGGCAAGCAATCCTTGGAGACCATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATTTCTATGTACTTCGCGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCGTgtgatagctttgaattctgccatctgcccagaggtacattcctggctctt Alignment from GeneWise GTGACATCCATGGCCAGTACTATGACCTT-CTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGCATTTATGGCTTCTATGATGAAT tcttgtacttacttagtgtacttccttacttttatatcttctgtctcaagGCGACATCCATGGACAGTACTACGACCTTCCTACACCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCCTGGGGGATTATGTAGACCGGGGCAAGCAATCCTTGGAGACCATCTGCCTGTTGCTGACCTATAAGATCAGATACCTGGAGAATTTCTATGTACTTCGCGGAAACCATGAGTGTGCCAGCATTAACCGCATTTATGGCTTTTATGATGCGTgtgatagctttgaattctgccatctgcccagaggtacattcctggctctt #### Ppp1ca_ID411_5 --> 2 - 0 Original Alignment gcCTGTCTCCAGACTTGCAATCCATGGAGCAGATTAGGCGTATT-ATGCGGCCCACAGACGTGCCTGACCAGGGCCTACTGTGTGATCTCCTGTGGTCTGACCCTGACAAGGATGTTCAAGGCTGGGGCGAGAATGACCGTGGTGTCTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATCTGCAGAGCACATCAG caggatagcacttggtttaaggaacactcttttctgtatttcttttacaggcCTGTCTCCAGACTTGCAATCCATGGAGCAGATCAGGCGTATTCATGCGGCCCACAGACGTCCCAGACCAAGGCCTACTGTGTGATCTCCTGTGGTCTGATCCTGACAAGGATGTTCAAGGCTGGGGTGAGAATGACCGTGGTGTTTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATTTGCAGAGCGCATCAGgtgagttgatgggtgagggatgggctgggagtgggggtggcatgcctaac Alignment from CESAR gcCTGTCTCCAGACTTGCAATCCATGGAGCAGATTAGGCGTATT-ATGCGGCCCACAGACGTGCCTGACCAGGGCCTACTGTGTGATCTCCTGTGGTCTGACCCTGACAAGGATGTTCAAGGCTGGGGCGAGAATGACCGTGGTGTCTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATCTGCAGAGCACATCAG caggatagcacttggtttaaggaacactcttttctgtatttcttttacaggcCTGTCTCCAGACTTGCAATCCATGGAGCAGATCAGGCGTATTCATGCGGCCCACAGACGTCCCAGACCAAGGCCTACTGTGTGATCTCCTGTGGTCTGATCCTGACAAGGATGTTCAAGGCTGGGGTGAGAATGACCGTGGTGTTTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATTTGCAGAGCGCATCAGgtgagttgatgggtgagggatgggctgggagtgggggtggcatgcctaac Alignment from Spaln_aa2Genome GCCTGTCTCCAGACTTGCAATCCATGGAGCAGATTAGGCGTATT-ATGCGGCCCACAGACGTGCCTGACCAGGGCCTACTGTGTGATCTCCTGTGGTCTGACCCTGACAAGGATGTTCAAGGCTGGGGCGAGAATGACCGTGGTGTCTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATCTGCAGAGCACATCAG caggatagcacttggtttaaggaacactcttttctgtatttcttttacagGCCTGTCTCCAGACTTGCAATCCATGGAGCAGATCAGGCGTATTcATGCGGCCCACAGACGTCCCAGACCAAGGCCTACTGTGTGATCTCCTGTGGTCTGATCCTGACAAGGATGTTCAAGGCTGGGGTGAGAATGACCGTGGTGTTTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATTTGCAGAGCGCATCAGgtgagttgatgggtgagggatgggctgggagtgggggtggcatgcctaac Alignment from Spaln_nt2Genome GCCTGTCTCCAGACTTGCAATCCATGGAGCAGATTAGGCGTATT-ATGCGGCCCACAGACGTGCCTGACCAGGGCCTACTGTGTGATCTCCTGTGGTCTGACCCTGACAAGGATGTTCAAGGCTGGGGCGAGAATGACCGTGGTGTCTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATCTGCAGAGCACATCAG caggatagcacttggtttaaggaacactcttttctgtatttcttttacagGCCTGTCTCCAGACTTGCAATCCATGGAGCAGATCAGGCGTATTCATGCGGCCCACAGACGTCCCAGACCAAGGCCTACTGTGTGATCTCCTGTGGTCTGATCCTGACAAGGATGTTCAAGGCTGGGGTGAGAATGACCGTGGTGTTTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATTTGCAGAGCGCATCAGgtgagttgatgggtgagggatgggctgggagtgggggtggcatgcctaac Alignment from Pairagon GCCTGTCTCCAGACTTGCAATCCATGGAGCAGATTAGGCGTATT-ATGCGGCCCACAGACGTGCCTGACCAGGGCCTACTGTGTGATCTCCTGTGGTCTGACCCTGACAAGGATGTTCAAGGCTGGGGCGAGAATGACCGTGGTGTCTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATCTGCAGAGCACATCAG caggatagcacttggtttaaggaacactcttttctgtatttcttttacagGCCTGTCTCCAGACTTGCAATCCATGGAGCAGATCAGGCGTATTCATGCGGCCCACAGACGTCCCAGACCAAGGCCTACTGTGTGATCTCCTGTGGTCTGATCCTGACAAGGATGTTCAAGGCTGGGGTGAGAATGACCGTGGTGTTTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATTTGCAGAGCGCATCAGgtgagttgatgggtgagggatgggctgggagtgggggtggcatgcctaac Alignment from Exonerate_protein2genome GCCTGTCTCCAGACTTGCAATCCATGGAGCAGATTAGGCGTATT-ATGCGGCCCACAGACGTGCCTGACCAGGGCCTACTGTGTGATCTCCTGTGGTCTGACCCTGACAAGGATGTTCAAGGCTGGGGCGAGAATGACCGTGGTGTCTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATCTGCAGAGCACATCAG caggatagcacttggtttaaggaacactcttttctgtatttcttttacagGCCTGTCTCCAGACTTGCAATCCATGGAGCAGATCAGGCGTATTCATGCGGCCCACAGACGTCCCAGACCAAGGCCTACTGTGTGATCTCCTGTGGTCTGATCCTGACAAGGATGTTCAAGGCTGGGGTGAGAATGACCGTGGTGTTTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATTTGCAGAGCGCATCAGgtgagttgatgggtgagggatgggctgggagtgggggtggcatgcctaac Alignment from Exonerate_coding2genome GCCTGTCTCCAGACTTGCAATCCATGGAGCAGATTAGGCGTATT-ATGCGGCCCACAGACGTGCCTGACCAGGGCCTACTGTGTGATCTCCTGTGGTCTGACCCTGACAAGGATGTTCAAGGCTGGGGCGAGAATGACCGTGGTGTCTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATCTGCAGAGCACATCAG caggatagcacttggtttaaggaacactcttttctgtatttcttttacagGCCTGTCTCCAGACTTGCAATCCATGGAGCAGATCAGGCGTATTCATGCGGCCCACAGACGTCCCAGACCAAGGCCTACTGTGTGATCTCCTGTGGTCTGATCCTGACAAGGATGTTCAAGGCTGGGGTGAGAATGACCGTGGTGTTTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATTTGCAGAGCGCATCAGgtgagttgatgggtgagggatgggctgggagtgggggtggcatgcctaac Alignment from GeneWise GCCTGTCTCCAGACTTGCAATCCATGGAGCAGATTAGGCGT-ATTATGCGGCCCACAGACGTGCCTGACCAGGGCCTACTGTGTGATCTCCTGTGGTCTGACCCTGACAAGGATGTTCAAGGCTGGGGCGAGAATGACCGTGGTGTCTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATCTGCAGAGCACATCAG caggatagcacttggtttaaggaacactcttttctgtatttcttttacagGCCTGTCTCCAGACTTGCAATCCATGGAGCAGATCAGGCGTATTCATGCGGCCCACAGACGTCCCAGACCAAGGCCTACTGTGTGATCTCCTGTGGTCTGATCCTGACAAGGATGTTCAAGGCTGGGGTGAGAATGACCGTGGTGTTTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCTCATTTGCAGAGCGCATCAGgtgagttgatgggtgagggatgggctgggagtgggggtggcatgcctaac #### Pprc1_ID9715_3 --> 0 - 0 Original Alignment AGCAGATTATCTCTGGAGGACCAGAATGAAATGTCGCTGCTCACAGCTCTGACGGAGATCTTGGACAATGCAGATTCTGAGAACCTGTCCCCTTTTGACACCATTCCTGATTCAGAG-CTGCTCGTGTCCCCTCGGGAGAGCTCCTCT agtaggttattagagatcatgtttagggaactactgctgtccttttacagAGCAGATTGTCTCTGGAGGACCAGAATGAAATGTCTCTGCTCACACCTCTGATGGAGATCTTGGACAATGCAGATTCTGAGAATCTGTCCCCATTTGACACCATCTCTGATTCAGAGCCTACTTGTGTCCCCTCGGGAGAGCTCATCTgtaggtattgcatcaggaagggaggcggctgaaaatcccaaccatatata Alignment from CESAR AGCAGATTATCTCTGGAGGACCAGAATGAAATGTCGCTGCTCACAGCTCTGACGGAGATCTTGGACAATGCAGATTCTGAGAACCTGTCCCCTTTTGACACCATTCCTGATTCAGAG-CTGCTCGTGTCCCCTCGGGAGAGCTCCTCT agtaggttattagagatcatgtttagggaactactgctgtccttttacagAGCAGATTGTCTCTGGAGGACCAGAATGAAATGTCTCTGCTCACACCTCTGATGGAGATCTTGGACAATGCAGATTCTGAGAATCTGTCCCCATTTGACACCATCTCTGATTCAGAGCCTACTTGTGTCCCCTCGGGAGAGCTCATCTgtaggtattgcatcaggaagggaggcggctgaaaatcccaaccatatata Alignment from Spaln_aa2Genome AGCAGATTATCTCTGGAGGACCAGAATGAAATGTCGCTGCTCACAGCTCTGACGGAGATCTTGGACAATGCAGATTCTGAGAACCTGTCCCCTTTTGACACCATTCCTGATTCAGAG-CTGCTCGTGTCCCCTCGGGAGAGCTCCTCT agtaggttattagagatcatgtttagggaactactgctgtccttttacagAGCAGATTGTCTCTGGAGGACCAGAATGAAATGTCTCTGCTCACACCTCTGATGGAGATCTTGGACAATGCAGATTCTGAGAATCTGTCCCCATTTGACACCATCTCTGATTCAGAGcCTACTTGTGTCCCCTCGGGAGAGCTCATCTgtaggtattgcatcaggaagggaggcggctgaaaatcccaaccatatata Alignment from Spaln_nt2Genome AGCAGATTATCTCTGGAGGACCAGAATGAAATGTCGCTGCTCACAGCTCTGACGGAGATCTTGGACAATGCAGATTCTGAGAACCTGTCCCCTTTTGACACCATTCCTGATTCAGAGC-TGCTCGTGTCCCCTCGGGAGAGCTCCTCT agtaggttattagagatcatgtttagggaactactgctgtccttttacagAGCAGATTGTCTCTGGAGGACCAGAATGAAATGTCTCTGCTCACACCTCTGATGGAGATCTTGGACAATGCAGATTCTGAGAATCTGTCCCCATTTGACACCATCTCTGATTCAGAGCCTACTTGTGTCCCCTCGGGAGAGCTCATCTgtaggtattgcatcaggaagggaggcggctgaaaatcccaaccatatata Alignment from Pairagon AGCAGATTATCTCTGGAGGACCAGAATGAAATGTCGCTGCTCACAGCTCTGACGGAGATCTTGGACAATGCAGATTCTGAGAACCTGTCCCCTTTTGACACCATTCCTGATTCAGAG-CTGCTCGTGTCCCCTCGGGAGAGCTCCTCT agtaggttattagagatcatgtttagggaactactgctgtccttttacagAGCAGATTGTCTCTGGAGGACCAGAATGAAATGTCTCTGCTCACACCTCTGATGGAGATCTTGGACAATGCAGATTCTGAGAATCTGTCCCCATTTGACACCATCTCTGATTCAGAGCCTACTTGTGTCCCCTCGGGAGAGCTCATCTgtaggtattgcatcaggaagggaggcggctgaaaatcccaaccatatata Alignment from Exonerate_protein2genome AGCAGATTATCTCTGGAGGACCAGAATGAAATGTCGCTGCTCACAGCTCTGACGGAGATCTTGGACAATGCAGATTCTGAGAACCTGTCCCCTTTTGACACCATTCCTGATTCAGAG-CTGCTCGTGTCCCCTCGGGAGAGCTCCTCT agtaggttattagagatcatgtttagggaactactgctgtccttttacagAGCAGATTGTCTCTGGAGGACCAGAATGAAATGTCTCTGCTCACACCTCTGATGGAGATCTTGGACAATGCAGATTCTGAGAATCTGTCCCCATTTGACACCATCTCTGATTCAGAGCCTACTTGTGTCCCCTCGGGAGAGCTCATCTgtaggtattgcatcaggaagggaggcggctgaaaatcccaaccatatata Alignment from Exonerate_coding2genome AGCAGATTATCTCTGGAGGACCAGAATGAAATGTCGCTGCTCACAGCTCTGACGGAGATCTTGGACAATGCAGATTCTGAGAACCTGTCCCCTTTTGACACCATTCCTGATTCAGAG-CTGCTCGTGTCCCCTCGGGAGAGCTCCTCT agtaggttattagagatcatgtttagggaactactgctgtccttttacagAGCAGATTGTCTCTGGAGGACCAGAATGAAATGTCTCTGCTCACACCTCTGATGGAGATCTTGGACAATGCAGATTCTGAGAATCTGTCCCCATTTGACACCATCTCTGATTCAGAGCCTACTTGTGTCCCCTCGGGAGAGCTCATCTgtaggtattgcatcaggaagggaggcggctgaaaatcccaaccatatata Alignment from GeneWise AGCAGATTATCTCTGGAGGACCAGAATGAAATGTCGCTGCTCACAGCTCTGACGGAGATCTTGGACAATGCAGATTCTGAGAACCTGTCCCCTTTTGACACCATTCCTGATTCAGAG-CTGCTCGTGTCCCCTCGGGAGAGCTCCTCT agtaggttattagagatcatgtttagggaactactgctgtccttttacagAGCAGATTGTCTCTGGAGGACCAGAATGAAATGTCTCTGCTCACACCTCTGATGGAGATCTTGGACAATGCAGATTCTGAGAATCTGTCCCCATTTGACACCATCTCTGATTCAGAGCCTACTTGTGTCCCCTCGGGAGAGCTCATCTgtaggtattgcatcaggaagggaggcggctgaaaatcccaaccatatata #### Pprc1_ID9723_11 --> 1 - 0 Original Alignment gTACAGCTCTTACCGTGCAAATGACCATTAC-CAAAGGCAGAGAGTGCTACAGAAGGAGCGTGCAATA gagctctgaatcttgacttgtctggggcatgtctatgttctgactcctaggTACAGCTCTTATCATGCAAATGACCATTACCCAAAGGCAGAGAGTGCTACAGAAGGAATGTGCCATAgtgagtcgggtagtaggtcagggggggagggtgatgtgtgctgtgtgcca Alignment from CESAR gTACAGCTCTTACCGTGCAAATGACCATTAC-CAAAGGCAGAGAGTGCTACAGAAGGAGCGTGCAATA gagctctgaatcttgacttgtctggggcatgtctatgttctgactcctaggTACAGCTCTTATCATGCAAATGACCATTACCCAAAGGCAGAGAGTGCTACAGAAGGAATGTGCCATAgtgagtcgggtagtaggtcagggggggagggtgatgtgtgctgtgtgcca Alignment from Spaln_aa2Genome GTACAGCTCTTACCGTGCAAATGACCATTAC-CAAAGGCAGAGAGTGCTACAGAAGGAGCGTGCAATA gagctctgaatcttgacttgtctggggcatgtctatgttctgactcctagGTACAGCTCTTATCATGCAAATGACCATTACcCAAAGGCAGAGAGTGCTACAGAAGGAATGTGCCATAgtgagtcgggtagtaggtcagggggggagggtgatgtgtgctgtgtgcca Alignment from Spaln_nt2Genome GTACAGCTCTTACCGTGCAAATGACCATTA-CCAAAGGCAGAGAGTGCTACAGAAGGAGCGTGCAATA gagctctgaatcttgacttgtctggggcatgtctatgttctgactcctagGTACAGCTCTTATCATGCAAATGACCATTACCCAAAGGCAGAGAGTGCTACAGAAGGAATGTGCCATAgtgagtcgggtagtaggtcagggggggagggtgatgtgtgctgtgtgcca Alignment from Pairagon GTACAGCTCTTACCGTGCAAATGACCATTA-CCAAAGGCAGAGAGTGCTACAGAAGGAGCGTGCAATA gagctctgaatcttgacttgtctggggcatgtctatgttctgactcctagGTACAGCTCTTATCATGCAAATGACCATTACCCAAAGGCAGAGAGTGCTACAGAAGGAATGTGCCATAgtgagtcgggtagtaggtcagggggggagggtgatgtgtgctgtgtgcca Alignment from Exonerate_protein2genome GTACAGCTCTTACCGTGCAAATGACCATTAC-CAAAGGCAGAGAGTGCTACAGAAGGAGCGTGCAATA gagctctgaatcttgacttgtctggggcatgtctatgttctgactcctagGTACAGCTCTTATCATGCAAATGACCATTACCCAAAGGCAGAGAGTGCTACAGAAGGAATGTGCCATAgtgagtcgggtagtaggtcagggggggagggtgatgtgtgctgtgtgcca Alignment from Exonerate_coding2genome GTACAGCTCTTACCGTGCAAATGACCATTAC-CAAAGGCAGAGAGTGCTACAGAAGGAGCGTGCAATA gagctctgaatcttgacttgtctggggcatgtctatgttctgactcctagGTACAGCTCTTATCATGCAAATGACCATTACCCAAAGGCAGAGAGTGCTACAGAAGGAATGTGCCATAgtgagtcgggtagtaggtcagggggggagggtgatgtgtgctgtgtgcca Alignment from GeneWise GTACAGCTCTTACCGTGCAAATGACCATTAC-CAAAGGCAGAGAGTGCTACAGAAGGAGCGTGCAATA gagctctgaatcttgacttgtctggggcatgtctatgttctgactcctagGTACAGCTCTTATCATGCAAATGACCATTACCCAAAGGCAGAGAGTGCTACAGAAGGAATGTGCCATAgtgagtcgggtagtaggtcagggggggagggtgatgtgtgctgtgtgcca #### Pprc1_ID9724_12 --> 0 - 2 Original Alignment GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGC-CGAATGACTCGGTCGGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTACCATTCATTTTCGTGTCCAAgg tcaacagctgtagctgtggctcaaagtcagtgtgtttcattgtgttaaagGAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCCGAATGACTCGGTCAGAGCTTAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTACCATCCATTTTAGAGTCCAAgggtgagtcttaaaggtgggttctctctgttgcgttttcctgttaaaattta Alignment from CESAR GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGC-CGAATGACTCGGTCGGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTACCATTCATTTTCGTGTCCAAgg tcaacagctgtagctgtggctcaaagtcagtgtgtttcattgtgttaaagGAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCCGAATGACTCGGTCAGAGCTTAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTACCATCCATTTTAGAGTCCAAgggtgagtcttaaaggtgggttctctctgttgcgttttcctgttaaaattta Alignment from Spaln_aa2Genome GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGC-CGAATGACTCGGTCGGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTACCATTCATTTTCGTGTCCAAGG tcaacagctgtagctgtggctcaaagtcagtgtgtttcattgtgttaaagGAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCcCGAATGACTCGGTCAGAGCTTAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTACCATCCATTTTAGAGTCCAAGGgtgagtcttaaaggtgggttctctctgttgcgttttcctgttaaaattta Alignment from Spaln_nt2Genome GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGG-CCGAATGACTCGGTCGGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTACCATTCATTTTCGTGTCCAAGG tcaacagctgtagctgtggctcaaagtcagtgtgtttcattgtgttaaagGAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCCGAATGACTCGGTCAGAGCTTAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTACCATCCATTTTAGAGTCCAAGGgtgagtcttaaaggtgggttctctctgttgcgttttcctgttaaaattta Alignment from Pairagon GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGG-CCGAATGACTCGGTCGGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTACCATTCATTTTCGTGTCCAAGG tcaacagctgtagctgtggctcaaagtcagtgtgtttcattgtgttaaagGAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCCGAATGACTCGGTCAGAGCTTAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTACCATCCATTTTAGAGTCCAAGGgtgagtcttaaaggtgggttctctctgttgcgttttcctgttaaaattta Alignment from Exonerate_protein2genome GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGC-CGAATGACTCGGTCGGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTACCATTCATTTTCGTGTCCAAGG tcaacagctgtagctgtggctcaaagtcagtgtgtttcattgtgttaaagGAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCCGAATGACTCGGTCAGAGCTTAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTACCATCCATTTTAGAGTCCAAGGgtgagtcttaaaggtgggttctctctgttgcgttttcctgttaaaattta Alignment from Exonerate_coding2genome GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGC-CGAATGACTCGGTCGGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTACCATTCATTTTCGTGTCCAAGG tcaacagctgtagctgtggctcaaagtcagtgtgtttcattgtgttaaagGAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCCGAATGACTCGGTCAGAGCTTAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTACCATCCATTTTAGAGTCCAAGGgtgagtcttaaaggtgggttctctctgttgcgttttcctgttaaaattta Alignment from GeneWise GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGC-CGAATGACTCGGTCGGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTACCATTCATTTTCGTGTCCAAGG tcaacagctgtagctgtggctcaaagtcagtgtgtttcattgtgttaaagGAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCCGAATGACTCGGTCAGAGCTTAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTACCATCCATTTTAGAGTCCAAGGgtgagtcttaaaggtgggttctctctgttgcgttttcctgttaaaattta #### Pprc1_ID9725_13 --> 1 - 1 Original Alignment tGACAACTATGGTTTCGTCACTTACCGTTATGCTGAAGAGGCATTTGCAGCCATTGAGAGTGGCCACAAGTTGCGGCAGGCAGACGAGCAGCCCTTTGATCTCTGCTTTGGGGGCCGAAGGCAGTTCTGCAAG-AGGAGTTACTCTGACCTTg ggaatgagaagacacacctttgtacccacctgccatgaattatgccctagtGACAACTATGGGTTTGTCACATACCGTTATGCTGAAGAGGCATTTGCAGCCATTGAGAGTGGCCACAAGCTGCGGCAGGCTGACGAGCAGCCCTTTGATCTCTACTTTGGCGGCCGAAGGCAGTTCTGCCAGCAGGAGTTACTCTGACCTTggtaagagttgcagatgggcttcttgacagcatttgggaggaaaacttgct Alignment from CESAR tGACAACTATGGTTTCGTCACTTACCGTTATGCTGAAGAGGCATTTGCAGCCATTGAGAGTGGCCACAAGTTGCGGCAGGCAGACGAGCAGCCCTTTGATCTCTGCTTTGGGGGCCGAAGGCAGTTCTGCAAG-AGGAGTTACTCTGACCTTg ggaatgagaagacacacctttgtacccacctgccatgaattatgccctagtGACAACTATGGGTTTGTCACATACCGTTATGCTGAAGAGGCATTTGCAGCCATTGAGAGTGGCCACAAGCTGCGGCAGGCTGACGAGCAGCCCTTTGATCTCTACTTTGGCGGCCGAAGGCAGTTCTGCCAGCAGGAGTTACTCTGACCTTggtaagagttgcagatgggcttcttgacagcatttgggaggaaaacttgct Alignment from Spaln_aa2Genome TGACAACTATGGTTTCGTCACTTACCGTTATGCTGAAGAGGCATTTGCAGCCATTGAGAGTGGCCACAAGTTGCGGCAGGCAGACGAGCAGCCCTTTGATCTCTGCTTTGGGGGCCGAAGGCAGTTCTGCAAG-AGGAGTTACTCTGACCTTG ggaatgagaagacacacctttgtacccacctgccatgaattatgccctagTGACAACTATGGGTTTGTCACATACCGTTATGCTGAAGAGGCATTTGCAGCCATTGAGAGTGGCCACAAGCTGCGGCAGGCTGACGAGCAGCCCTTTGATCTCTACTTTGGCGGCCGAAGGCAGTTCTGCCAGcAGGAGTTACTCTGACCTTGgtaagagttgcagatgggcttcttgacagcatttgggaggaaaacttgct Alignment from Spaln_nt2Genome TGACAACTATGGTTTCGTCACTTACCGTTATGCTGAAGAGGCATTTGCAGCCATTGAGAGTGGCCACAAGTTGCGGCAGGCAGACGAGCAGCCCTTTGATCTCTGCTTTGGGGGCCGAAGGCAGTTCTGCAAG-AGGAGTTACTCTGACCTTG ggaatgagaagacacacctttgtacccacctgccatgaattatgccctagTGACAACTATGGGTTTGTCACATACCGTTATGCTGAAGAGGCATTTGCAGCCATTGAGAGTGGCCACAAGCTGCGGCAGGCTGACGAGCAGCCCTTTGATCTCTACTTTGGCGGCCGAAGGCAGTTCTGCCAGCAGGAGTTACTCTGACCTTGgtaagagttgcagatgggcttcttgacagcatttgggaggaaaacttgct Alignment from Pairagon TGACAACTATGGTTTCGTCACTTACCGTTATGCTGAAGAGGCATTTGCAGCCATTGAGAGTGGCCACAAGTTGCGGCAGGCAGACGAGCAGCCCTTTGATCTCTGCTTTGGGGGCCGAAGGCAGTTCTGCAAG-AGGAGTTACTCTGACCTTG ggaatgagaagacacacctttgtacccacctgccatgaattatgccctagTGACAACTATGGGTTTGTCACATACCGTTATGCTGAAGAGGCATTTGCAGCCATTGAGAGTGGCCACAAGCTGCGGCAGGCTGACGAGCAGCCCTTTGATCTCTACTTTGGCGGCCGAAGGCAGTTCTGCCAGCAGGAGTTACTCTGACCTTGgtaagagttgcagatgggcttcttgacagcatttgggaggaaaacttgct Alignment from Exonerate_protein2genome TGACAACTATGGTTTCGTCACTTACCGTTATGCTGAAGAGGCATTTGCAGCCATTGAGAGTGGCCACAAGTTGCGGCAGGCAGACGAGCAGCCCTTTGATCTCTGCTTTGGGGGCCGAAGGCAGTTCTGCAAG-AGGAGTTACTCTGACCTTG ggaatgagaagacacacctttgtacccacctgccatgaattatgccctagTGACAACTATGGGTTTGTCACATACCGTTATGCTGAAGAGGCATTTGCAGCCATTGAGAGTGGCCACAAGCTGCGGCAGGCTGACGAGCAGCCCTTTGATCTCTACTTTGGCGGCCGAAGGCAGTTCTGCCAGCAGGAGTTACTCTGACCTTGgtaagagttgcagatgggcttcttgacagcatttgggaggaaaacttgct Alignment from Exonerate_coding2genome TGACAACTATGGTTTCGTCACTTACCGTTATGCTGAAGAGGCATTTGCAGCCATTGAGAGTGGCCACAAGTTGCGGCAGGCAGACGAGCAGCCCTTTGATCTCTGCTTTGGGGGCCGAAGGCAGTTCTGCAAG-AGGAGTTACTCTGACCTTG ggaatgagaagacacacctttgtacccacctgccatgaattatgccctagTGACAACTATGGGTTTGTCACATACCGTTATGCTGAAGAGGCATTTGCAGCCATTGAGAGTGGCCACAAGCTGCGGCAGGCTGACGAGCAGCCCTTTGATCTCTACTTTGGCGGCCGAAGGCAGTTCTGCCAGCAGGAGTTACTCTGACCTTGgtaagagttgcagatgggcttcttgacagcatttgggaggaaaacttgct Alignment from GeneWise TGACAACTATGGTTTCGTCACTTACCGTTATGCTGAAGAGGCATTTGCAGCCATTGAGAGTGGCCACAAGTTGCGGCAGGCAGACGAGCAGCCCTTTGATCTCTGCTTTGGGGGCCGAAGGCAGTTCTGC-AAGAGGAGTTACTCTGACCTTG ggaatgagaagacacacctttgtacccacctgccatgaattatgccctagTGACAACTATGGGTTTGTCACATACCGTTATGCTGAAGAGGCATTTGCAGCCATTGAGAGTGGCCACAAGCTGCGGCAGGCTGACGAGCAGCCCTTTGATCTCTACTTTGGCGGCCGAAGGCAGTTCTGCCAGCAGGAGTTACTCTGACCTTGgtaagagttgcagatgggcttcttgacagcatttgggaggaaaacttgct #### Prdx5_ID1852_5 --> 0 - 2 Original Alignment GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTT-GGGAATCGTCGGCTGAAAag tcctgggcctgtgcaggggcttctggccgcttctcttcaacttgacccagGTGACAGACCTATTATTGGATGATTCTTTGGTGTCTCTCTTTCGGGAATCATTGGCTGAAAaggtaagggagaccccttcaccccaacctcacccccatgccggttggcacta Alignment from CESAR GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTT-GGGAATCGTCGGCTGAAAag tcctgggcctgtgcaggggcttctggccgcttctcttcaacttgacccagGTGACAGACCTATTATTGGATGATTCTTTGGTGTCTCTCTTTCGGGAATCATTGGCTGAAAaggtaagggagaccccttcaccccaacctcacccccatgccggttggcacta Alignment from Spaln_aa2Genome GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTT-GGGAATCGTCGGCTGAAAAG tcctgggcctgtgcaggggcttctggccgcttctcttcaacttgacccagGTGACAGACCTATTATTGGATGATTCTTTGGTGTCTCTCTTTcGGGAATCATTGGCTGAAAAGgtaagggagaccccttcaccccaacctcacccccatgccggttggcacta Alignment from Spaln_nt2Genome GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTT-GGGAATCGTCGGCTGAAAAG tcctgggcctgtgcaggggcttctggccgcttctcttcaacttgacccagGTGACAGACCTATTATTGGATGATTCTTTGGTGTCTCTCTTTCGGGAATCATTGGCTGAAAAGgtaagggagaccccttcaccccaacctcacccccatgccggttggcacta Alignment from Pairagon GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTCTTT-GGGAATCGTCGGCTGAAAAG tcctgggcctgtgcaggggcttctggccgcttctcttcaacttgacccagGTGACAGACCTATTATTGGATGATTCTTTGGTGTCTCTCTTTCGGGAATCATTGGCTGAAAAGgtaagggagaccccttcaccccaacctcacccccatgccggttggcacta Alignment from Exonerate_protein2genome GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTC-TTTGGGAATCGTCGGCTGAAAAG tcctgggcctgtgcaggggcttctggccgcttctcttcaacttgacccagGTGACAGACCTATTATTGGATGATTCTTTGGTGTCTCTCTTTCGGGAATCATTGGCTGAAAAGgtaagggagaccccttcaccccaacctcacccccatgccggttggcacta Alignment from Exonerate_coding2genome GCGACAGACTTATTATTGGATGATTCTTTGGTGTCTCTC-TTTGGGAATCGTCGGCTGAAAAG tcctgggcctgtgcaggggcttctggccgcttctcttcaacttgacccagGTGACAGACCTATTATTGGATGATTCTTTGGTGTCTCTCTTTCGGGAATCATTGGCTGAAAAGgtaagggagaccccttcaccccaacctcacccccatgccggttggcacta Alignment from GeneWise --CTGAAAAG TCCTGGGCCTgtgcaggggcttctggccgcttctcttcaacttgacccaggtgacagacctattattggatgattctttggtgtctctctttcgggaatcattggctgaaaaggtaagggagaccccttcaccccaacctcacccccatgccggttggcacta #### Prdx5_ID1853_4 --> 0 - 0 Original Alignment GTTCGGCTCCTGGCTGACCCC-ACTGGAGCCTTTGGGAAG gccagcacctccactcaccaagccctcttgaaaactcttttctcttttagGTTCGGCTCCTGGCTGACCCCCACTGGAGCCTTTGGGAAGgtgagtgtaccttgcttccctcagcatgcgatcggtcttggagggacaca Alignment from CESAR GTTCGGCTCCTGGCTGAC-CCCACTGGAGCCTTTGGGAAG gccagcacctccactcaccaagccctcttgaaaactcttttctcttttagGTTCGGCTCCTGGCTGACCCCCACTGGAGCCTTTGGGAAGgtgagtgtaccttgcttccctcagcatgcgatcggtcttggagggacaca Alignment from Spaln_aa2Genome GTTCGGCTCCTGGCTGAC-CCCACTGGAGCCTTTGGGAAG gccagcacctccactcaccaagccctcttgaaaactcttttctcttttagGTTCGGCTCCTGGCTGACcCCCACTGGAGCCTTTGGGAAGgtgagtgtaccttgcttccctcagcatgcgatcggtcttggagggacaca Alignment from Spaln_nt2Genome GTTCGGCTCCTGGCTGA-CCCCACTGGAGCCTTTGGGAAG gccagcacctccactcaccaagccctcttgaaaactcttttctcttttagGTTCGGCTCCTGGCTGACCCCCACTGGAGCCTTTGGGAAGgtgagtgtaccttgcttccctcagcatgcgatcggtcttggagggacaca Alignment from Pairagon GTTCGGCTCCTGGCTGA-CCCCACTGGAGCCTTTGGGAAG gccagcacctccactcaccaagccctcttgaaaactcttttctcttttagGTTCGGCTCCTGGCTGACCCCCACTGGAGCCTTTGGGAAGgtgagtgtaccttgcttccctcagcatgcgatcggtcttggagggacaca Alignment from Exonerate_protein2genome GTTCGGCTCCTGGCTGAC-CCCACTGGAGCCTTTGGGAAG gccagcacctccactcaccaagccctcttgaaaactcttttctcttttagGTTCGGCTCCTGGCTGACCCCCACTGGAGCCTTTGGGAAGgtgagtgtaccttgcttccctcagcatgcgatcggtcttggagggacaca Alignment from Exonerate_coding2genome GTTCGGCTCCTGGCTGAC-CCCACTGGAGCCTTTGGGAAG gccagcacctccactcaccaagccctcttgaaaactcttttctcttttagGTTCGGCTCCTGGCTGACCCCCACTGGAGCCTTTGGGAAGgtgagtgtaccttgcttccctcagcatgcgatcggtcttggagggacaca Alignment from GeneWise gccagcacctccactcaccaagccctcttgaaaactcttttctcttttaggttcggctcctggctgacccccactggagcctttgggaaggtgagtgtaccttgcttccctcagcatgcgatcggtcttggagggacaca #### Prdx5_ID1854_3 --> 0 - 0 Original Alignment ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTT-GTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG aggctaagtatctgcacttgctcttcttcttaccttctttaaccacctagACCCACCTGCCTGGCTTTGTGGAGCAAGCCGGAGCTCAGAAAGCCAAGGGAGCGCAGGTAGTGGCCTGTCTGAGTGTTAATGATGTCTTTCGTGATTGAGGAGTGGGGTCGAGCCCATGAAGCAGAAGGTAAGgtaaagagtggggtctatgtggctcattgtgagggtccagggccaggtag Alignment from CESAR ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTT-GTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG aggctaagtatctgcacttgctcttcttcttaccttctttaaccacctagACCCACCTGCCTGGCTTTGTGGAGCAAGCCGGAGCTCAGAAAGCCAAGGGAGCGCAGGTAGTGGCCTGTCTGAGTGTTAATGATGTCTTTCGTGATTGAGGAGTGGGGTCGAGCCCATGAAGCAGAAGGTAAGgtaaagagtggggtctatgtggctcattgtgagggtccagggccaggtag Alignment from Spaln_aa2Genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTT-GTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG aggctaagtatctgcacttgctcttcttcttaccttctttaaccacctagACCCACCTGCCTGGCTTTGTGGAGCAAGCCGGAGCTCAGAAAGCCAAGGGAGCGCAGGTAGTGGCCTGTCTGAGTGTTAATGATGTCTTTcGTGATTGAGGAGTGGGGTCGAGCCCATGAAGCAGAAGGTAAGgtaaagagtggggtctatgtggctcattgtgagggtccagggccaggtag Alignment from Spaln_nt2Genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTT-GTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG aggctaagtatctgcacttgctcttcttcttaccttctttaaccacctagACCCACCTGCCTGGCTTTGTGGAGCAAGCCGGAGCTCAGAAAGCCAAGGGAGCGCAGGTAGTGGCCTGTCTGAGTGTTAATGATGTCTTTCGTGATTGAGGAGTGGGGTCGAGCCCATGAAGCAGAAGGTAAGgtaaagagtggggtctatgtggctcattgtgagggtccagggccaggtag Alignment from Pairagon ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTT-GTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG aggctaagtatctgcacttgctcttcttcttaccttctttaaccacctagACCCACCTGCCTGGCTTTGTGGAGCAAGCCGGAGCTCAGAAAGCCAAGGGAGCGCAGGTAGTGGCCTGTCTGAGTGTTAATGATGTCTTTCGTGATTGAGGAGTGGGGTCGAGCCCATGAAGCAGAAGGTAAGgtaaagagtggggtctatgtggctcattgtgagggtccagggccaggtag Alignment from Exonerate_protein2genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTC-TTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG aggctaagtatctgcacttgctcttcttcttaccttctttaaccacctagACCCACCTGCCTGGCTTTGTGGAGCAAGCCGGAGCTCAGAAAGCCAAGGGAGCGCAGGTAGTGGCCTGTCTGAGTGTTAATGATGTCTTTCGTGATTGAGGAGTGGGGTCGAGCCCATGAAGCAGAAGGTAAGgtaaagagtggggtctatgtggctcattgtgagggtccagggccaggtag Alignment from Exonerate_coding2genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTC-TTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG aggctaagtatctgcacttgctcttcttcttaccttctttaaccacctagACCCACCTGCCTGGCTTTGTGGAGCAAGCCGGAGCTCAGAAAGCCAAGGGAGCGCAGGTAGTGGCCTGTCTGAGTGTTAATGATGTCTTTCGTGATTGAGGAGTGGGGTCGAGCCCATGAAGCAGAAGGTAAGgtaaagagtggggtctatgtggctcattgtgagggtccagggccaggtag Alignment from GeneWise ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTT-GTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG aggctaagtatctgcacttgctcttcttcttaccttctttaaccacctagACCCACCTGCCTGGCTTTGTGGAGCAAGCCGGAGCTCAGAAAGCCAAGGGAGCGCAGGTAGTGGCCTGTCTGAGTGTTAATGATGTCTTTCGTGATTGAGGAGTGGGGTCGAGCCCATGAAGCAGAAGGTAAGgtaaagagtggggtctatgtggctcattgtgagggtccagggccaggtag #### Prpf19_ID3044_3 --> 2 - 0 Original Alignment ttGCTCACCCAATCCGACCCAAGCCTCCCTCC-GCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG agctccttgcatcctagttctttatactctgccctctcatcctcccacagttGCTCACCCAATCCGACCCAAGCCTCCCTCTCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGGgtactgcctatgaaaggaatgcacctttgggcagggacctgaggaaaata Alignment from CESAR ttGCTCACCCAATCCGACCCAAGCCTCCCTCC-GCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG agctccttgcatcctagttctttatactctgccctctcatcctcccacagttGCTCACCCAATCCGACCCAAGCCTCCCTCTCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGGgtactgcctatgaaaggaatgcacctttgggcagggacctgaggaaaata Alignment from Spaln_aa2Genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCC-GCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG agctccttgcatcctagttctttatactctgccctctcatcctcccacagTTGCTCACCCAATCCGACCCAAGCCTCCCTCTcGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGGgtactgcctatgaaaggaatgcacctttgggcagggacctgaggaaaata Alignment from Spaln_nt2Genome TTGCTCACCCAATCCGACCCAAGCCTCCCTC-CGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG agctccttgcatcctagttctttatactctgccctctcatcctcccacagTTGCTCACCCAATCCGACCCAAGCCTCCCTCTCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGGgtactgcctatgaaaggaatgcacctttgggcagggacctgaggaaaata Alignment from Pairagon TTGCTCACCCAATCCGACCCAAGCCTCCCTC-CGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG agctccttgcatcctagttctttatactctgccctctcatcctcccacagTTGCTCACCCAATCCGACCCAAGCCTCCCTCTCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGGgtactgcctatgaaaggaatgcacctttgggcagggacctgaggaaaata Alignment from Exonerate_protein2genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCC-GCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG agctccttgcatcctagttctttatactctgccctctcatcctcccacagTTGCTCACCCAATCCGACCCAAGCCTCCCTCTCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGGgtactgcctatgaaaggaatgcacctttgggcagggacctgaggaaaata Alignment from Exonerate_coding2genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCC-GCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG agctccttgcatcctagttctttatactctgccctctcatcctcccacagTTGCTCACCCAATCCGACCCAAGCCTCCCTCTCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGGgtactgcctatgaaaggaatgcacctttgggcagggacctgaggaaaata Alignment from GeneWise TTGCTCACCCAATCCGACCCAAGCCTCCC-TCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG agctccttgcatcctagttctttatactctgccctctcatcctcccacagTTGCTCACCCAATCCGACCCAAGCCTCCCTCTCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGGgtactgcctatgaaaggaatgcacctttgggcagggacctgaggaaaata #### Prpf19_ID3045_4 --> 0 - 1 Original Alignment GATGCAGTCATGCTGCACAGCTTC-ACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAg catattctctggctctccctcagtcctccacactgttttgtgacccttagGATGCAGTCATGCTGCACAGCTTCCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAggttagtcatattgcatcgtaatgtccctttctctgcatttggttcacctt Alignment from CESAR GATGCAGTCATGCTGCACAGCTTC-ACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAg catattctctggctctccctcagtcctccacactgttttgtgacccttagGATGCAGTCATGCTGCACAGCTTCCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAggttagtcatattgcatcgtaatgtccctttcaattttccttttaaccgtt Alignment from Spaln_aa2Genome GATGCAGTCATGCTGCACAGCTTC-ACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG catattctctggctctccctcagtcctccacactgttttgtgacccttagGATGCAGTCATGCTGCACAGCTTCcACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgttagtcatattgcatcgtaatgtccctttctctgcatttggttcacctt Alignment from Spaln_nt2Genome GATGCAGTCATGCTGCACAGCTT-CACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG catattctctggctctccctcagtcctccacactgttttgtgacccttagGATGCAGTCATGCTGCACAGCTTCCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgttagtcatattgcatcgtaatgtccctttctctgcatttggttcacctt Alignment from Pairagon GATGCAGTCATGCTGCACAGCTT-CACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG catattctctggctctccctcagtcctccacactgttttgtgacccttagGATGCAGTCATGCTGCACAGCTTCCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgttagtcatattgcatcgtaatgtccctttctctgcatttggttcacctt Alignment from Exonerate_protein2genome GATGCAGTCATGCTGCACAGCTTC-ACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG catattctctggctctccctcagtcctccacactgttttgtgacccttagGATGCAGTCATGCTGCACAGCTTCCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgttagtcatattgcatcgtaatgtccctttctctgcatttggttcacctt Alignment from Exonerate_coding2genome GATGCAGTCATGCTGCACAGCTTC-ACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG catattctctggctctccctcagtcctccacactgttttgtgacccttagGATGCAGTCATGCTGCACAGCTTCCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgttagtcatattgcatcgtaatgtccctttctctgcatttggttcacctt Alignment from GeneWise GATGCAGTCATGCTGCACAGCTTC-ACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG catattctctggctctccctcagtcctccacactgttttgtgacccttagGATGCAGTCATGCTGCACAGCTTCCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgttagtcatattgcatcgtaatgtccctttctctgcatttggttcacctt #### Prpf19_ID3046_5 --> 2 - 0 Original Alignment ctCTGGCTACTCTGAAACCACAG-GCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG agtcatattgcatcgtaatgtccctttcaattttccttttaaccgttcagccCTGGCCACTCTGAAACCACAGCGCTGGCCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTAGTGgtaagggttccaccttcagggccccaccagtaactgacacttcacaagag Alignment from CESAR ctCTGGCTACTCTGAAACCACAG-GCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG agtcatattgcatcgtaatgtccctttcaattttccttttaaccgttcagccCTGGCCACTCTGAAACCACAGCGCTGGCCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTAGTGgtaagggttccaccttcagggccccaccagtaactgacacttcacaagag Alignment from Spaln_aa2Genome CTCTGGCTACTCTGAAACCACAG-GCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG agtcatattgcatcgtaatgtccctttcaattttccttttaaccgttcagCCCTGGCCACTCTGAAACCACAGcGCTGGCCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTAGTGgtaagggttccaccttcagggccccaccagtaactgacacttcacaagag Alignment from Spaln_nt2Genome CTCTGGCTACTCTGAAACCACAG-GCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG agtcatattgcatcgtaatgtccctttcaattttccttttaaccgttcagCCCTGGCCACTCTGAAACCACAGCGCTGGCCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTAGTGgtaagggttccaccttcagggccccaccagtaactgacacttcacaagag Alignment from Pairagon CTCTGGCTACTCTGAAACCACAG-GCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG agtcatattgcatcgtaatgtccctttcaattttccttttaaccgttcagCCCTGGCCACTCTGAAACCACAGCGCTGGCCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTAGTGgtaagggttccaccttcagggccccaccagtaactgacacttcacaagag Alignment from Exonerate_protein2genome CTCTGGCTACTCTGAAACCACAG-GCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG agtcatattgcatcgtaatgtccctttcaattttccttttaaccgttcagCCCTGGCCACTCTGAAACCACAGCGCTGGCCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTAGTGgtaagggttccaccttcagggccccaccagtaactgacacttcacaagag Alignment from Exonerate_coding2genome CTCTGGCTACTCTGAAACCACAG-GCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG agtcatattgcatcgtaatgtccctttcaattttccttttaaccgttcagCCCTGGCCACTCTGAAACCACAGCGCTGGCCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTAGTGgtaagggttccaccttcagggccccaccagtaactgacacttcacaagag Alignment from GeneWise TGGCTACTCTGAAACCACA GGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG AGTCATATTGCATCGTAATgtccctttcaattttccttttaaccgttcagccctggccactctgaaaccacagCGCTGGCCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTAGTGgtaagggttccaccttcagggccccaccagtaactgacacttcacaagag #### Prpf19_ID3047_6 --> 0 - 0 Original Alignment GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTG-GTGGGAATGACCCCTGAGATTATCCAGAAG gtggttgttgatgttgtgagcccttcccgcccttccctgttccctctcagGGAGCTGGAGAGCCCATGGATTTGGGTGAGCTGCGTGGGAATGACCCCTGAGATTATCCAGAAAgtaggatgagtgcacctcttatgagactgcagtcccctaattactaccac Alignment from CESAR GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTG-GTGGGAATGACCCCTGAGATTATCCAGAAG gtggttgttgatgttgtgagcccttcccgcccttccctgttccctctcagGGAGCTGGAGAGCCCATGGATTTGGGTGAGCTGCGTGGGAATGACCCCTGAGATTATCCAGAAAgtaggatgagtgcacctcttatgagactgcagtcccctaattactaccac Alignment from Spaln_aa2Genome GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGA-ATGACCCCTGAGATTATCCAGAAG gtggttgttgatgttgtgagcccttcccgcccttccctgttccctctcagGGAGCTGGAGAGCCCATGGATTTGGGTGAGCTGCGTGGGaATGACCCCTGAGATTATCCAGAAAgtaggatgagtgcacctcttatgagactgcagtcccctaattactaccac Alignment from Spaln_nt2Genome GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTG-GTGGGAATGACCCCTGAGATTATCCAGAAG gtggttgttgatgttgtgagcccttcccgcccttccctgttccctctcagGGAGCTGGAGAGCCCATGGATTTGGGTGAGCTGCGTGGGAATGACCCCTGAGATTATCCAGAAAgtaggatgagtgcacctcttatgagactgcagtcccctaattactaccac Alignment from Pairagon GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTG-GTGGGAATGACCCCTGAGATTATCCAGAAG gtggttgttgatgttgtgagcccttcccgcccttccctgttccctctcagGGAGCTGGAGAGCCCATGGATTTGGGTGAGCTGCGTGGGAATGACCCCTGAGATTATCCAGAAAgtaggatgagtgcacctcttatgagactgcagtcccctaattactaccac Alignment from Exonerate_protein2genome GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTG-GTGGGAATGACCCCTGAGATTATCCAGAAG gtggttgttgatgttgtgagcccttcccgcccttccctgttccctctcagGGAGCTGGAGAGCCCATGGATTTGGGTGAGCTGCGTGGGAATGACCCCTGAGATTATCCAGAAAgtaggatgagtgcacctcttatgagactgcagtcccctaattactaccac Alignment from Exonerate_coding2genome GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTG-GTGGGAATGACCCCTGAGATTATCCAGAAG gtggttgttgatgttgtgagcccttcccgcccttccctgttccctctcagGGAGCTGGAGAGCCCATGGATTTGGGTGAGCTGCGTGGGAATGACCCCTGAGATTATCCAGAAAgtaggatgagtgcacctcttatgagactgcagtcccctaattactaccac Alignment from GeneWise GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTG-GTGGGAATGACCCCTGAGATTATCCAGAAG gtggttgttgatgttgtgagcccttcccgcccttccctgttccctctcagGGAGCTGGAGAGCCCATGGATTTGGGTGAGCTGCGTGGGAATGACCCCTGAGATTATCCAGAAAgtaggatgagtgcacctcttatgagactgcagtcccctaattactaccac #### Prpf19_ID3050_9 --> 0 - 1 Original Alignment GGTCTACACAGTGCT-AGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTg ggaggctttgcttgggcatgatcgggttaaaatgtgtttatatctcctagGGTCTACACAGTGCTCAGTATTCCTGGGATTCTTGCTCTGGACCTGTGTCCCTCAGACACTAACAAGATTCTCACTggtaagtgtaggcctgactaacacaattaaaaggaactatgggccctccat Alignment from CESAR GGTCTACACAGTGCT-AGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTg ggaggctttgcttgggcatgatcgggttaaaatgtgtttatatctcctagGGTCTACACAGTGCTCAGTATTCCTGGGATTCTTGCTCTGGACCTGTGTCCCTCAGACACTAACAAGATTCTCACTggtaagtgtaggcctgactaacacaattaaaaggaactatgggccctccat Alignment from Spaln_aa2Genome GGTCTACACAGTGCT-AGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG ggaggctttgcttgggcatgatcgggttaaaatgtgtttatatctcctagGGTCTACACAGTGCTcAGTATTCCTGGGATTCTTGCTCTGGACCTGTGTCCCTCAGACACTAACAAGATTCTCACTGgtaagtgtaggcctgactaacacaattaaaaggaactatgggccctccat Alignment from Spaln_nt2Genome GGTCTACACAGTGCT-AGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG ggaggctttgcttgggcatgatcgggttaaaatgtgtttatatctcctagGGTCTACACAGTGCTCAGTATTCCTGGGATTCTTGCTCTGGACCTGTGTCCCTCAGACACTAACAAGATTCTCACTGgtaagtgtaggcctgactaacacaattaaaaggaactatgggccctccat Alignment from Pairagon GGTCTACACAGTGCT-AGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG ggaggctttgcttgggcatgatcgggttaaaatgtgtttatatctcctagGGTCTACACAGTGCTCAGTATTCCTGGGATTCTTGCTCTGGACCTGTGTCCCTCAGACACTAACAAGATTCTCACTGgtaagtgtaggcctgactaacacaattaaaaggaactatgggccctccat Alignment from Exonerate_protein2genome GGTCTACACAGTGCT-AGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG ggaggctttgcttgggcatgatcgggttaaaatgtgtttatatctcctagGGTCTACACAGTGCTCAGTATTCCTGGGATTCTTGCTCTGGACCTGTGTCCCTCAGACACTAACAAGATTCTCACTGgtaagtgtaggcctgactaacacaattaaaaggaactatgggccctccat Alignment from Exonerate_coding2genome GGTCTACACAGTGCT-AGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG ggaggctttgcttgggcatgatcgggttaaaatgtgtttatatctcctagGGTCTACACAGTGCTCAGTATTCCTGGGATTCTTGCTCTGGACCTGTGTCCCTCAGACACTAACAAGATTCTCACTGgtaagtgtaggcctgactaacacaattaaaaggaactatgggccctccat Alignment from GeneWise TACACAGTGCTAGCATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG ggaggctttgcttgggcatgatcgggttaaaatgtgtttatatctcctagggtctacacagTG------CTCAGTATTCCTGGGATTCTTGCTCTGGACCTGTGTCCCTCAGACACTAACAAGATTCTCACTGgtaagtgtaggcctgactaacacaattaaaaggaactatgggccctccat #### Prpf19_ID3053_12 --> 0 - 1 Original Alignment TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAG-GTGACAGATGAGACCTCCGGCTGCt ttgaaggccaccagaccaacttgttatttcccactgttgtgcctctgcagTACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGCGTGACAGATGAGACCTCTGGCTGCtgtgagtgaccatcgagacactgagcacctttgcttgtactttgtcagtat Alignment from CESAR TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAG-GTGACAGATGAGACCTCCGGCTGCt ttgaaggccaccagaccaacttgttatttcccactgttgtgcctctgcagTACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGCGTGACAGATGAGACCTCTGGCTGCtgtgagtgaccatcgagacactgagcacctttgcttgtactttgtcagtat Alignment from Spaln_aa2Genome TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAG-GTGACAGATGAGACCTCCGGCTGCT ttgaaggccaccagaccaacttgttatttcccactgttgtgcctctgcagTACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGcGTGACAGATGAGACCTCTGGCTGCTgtgagtgaccatcgagacactgagcacctttgcttgtactttgtcagtat Alignment from Spaln_nt2Genome TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAG-GTGACAGATGAGACCTCCGGCTGCT ttgaaggccaccagaccaacttgttatttcccactgttgtgcctctgcagTACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGCGTGACAGATGAGACCTCTGGCTGCTgtgagtgaccatcgagacactgagcacctttgcttgtactttgtcagtat Alignment from Pairagon TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAG-GTGACAGATGAGACCTCCGGCTGCT ttgaaggccaccagaccaacttgttatttcccactgttgtgcctctgcagTACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGCGTGACAGATGAGACCTCTGGCTGCTgtgagtgaccatcgagacactgagcacctttgcttgtactttgtcagtat Alignment from Exonerate_protein2genome TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAG-GTGACAGATGAGACCTCCGGCTGCT ttgaaggccaccagaccaacttgttatttcccactgttgtgcctctgcagTACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGCGTGACAGATGAGACCTCTGGCTGCTgtgagtgaccatcgagacactgagcacctttgcttgtactttgtcagtat Alignment from Exonerate_coding2genome TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAG-GTGACAGATGAGACCTCCGGCTGCT ttgaaggccaccagaccaacttgttatttcccactgttgtgcctctgcagTACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGCGTGACAGATGAGACCTCTGGCTGCTgtgagtgaccatcgagacactgagcacctttgcttgtactttgtcagtat Alignment from GeneWise TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAG-GTGACAGATGAGACCTCCGGCTGCT ttgaaggccaccagaccaacttgttatttcccactgttgtgcctctgcagTACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGCGTGACAGATGAGACCTCTGGCTGCTgtgagtgaccatcgagacactgagcacctttgcttgtactttgtcagtat #### Pygm_ID1679_3 --> 0 - 1 Original Alignment CTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAG-GAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTGGCAg ggtgtcttatgttggtacttgggcctcagtcctgtcttctttatctgcagCTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGCGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTTGCAggtgagtccatagcttgcagaggtggggtatgggagttactcacattgggt Alignment from CESAR CTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAG-GAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTGGCAg ggtgtcttatgttggtacttgggcctcagtcctgtcttctttatctgcagCTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGCGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTTGCAggtgagtccatagcttgcagaggtggggtatgggagttactcacattgggt Alignment from Spaln_aa2Genome CTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAG-GAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTGGCAG ggtgtcttatgttggtacttgggcctcagtcctgtcttctttatctgcagCTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGcGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTTGCAGgtgagtccatagcttgcagaggtggggtatgggagttactcacattgggt Alignment from Spaln_nt2Genome CTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAG-GAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTGGCAG ggtgtcttatgttggtacttgggcctcagtcctgtcttctttatctgcagCTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGCGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTTGCAGgtgagtccatagcttgcagaggtggggtatgggagttactcacattgggt Alignment from Pairagon CTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAG-GAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTGGCAG ggtgtcttatgttggtacttgggcctcagtcctgtcttctttatctgcagCTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGCGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTTGCAGgtgagtccatagcttgcagaggtggggtatgggagttactcacattgggt Alignment from Exonerate_protein2genome CTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAG-GAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTGGCAG ggtgtcttatgttggtacttgggcctcagtcctgtcttctttatctgcagCTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGCGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTTGCAGgtgagtccatagcttgcagaggtggggtatgggagttactcacattgggt Alignment from Exonerate_coding2genome CTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAG-GAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTGGCAG ggtgtcttatgttggtacttgggcctcagtcctgtcttctttatctgcagCTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGCGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTTGCAGgtgagtccatagcttgcagaggtggggtatgggagttactcacattgggt Alignment from GeneWise CTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAG-GAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTGGCAG ggtgtcttatgttggtacttgggcctcagtcctgtcttctttatctgcagCTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGCGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTTGCAGgtgagtccatagcttgcagaggtggggtatgggagttactcacattgggt #### Pygm_ID1687_11 --> 0 - 2 Original Alignment CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCT-GGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCat aaaagagggagaccactaatgctgggtcgattttattctttattctttagCGGGTGGCAGCTGCATTCCCAGGGGATGTAGATAGGCTGTGGCGCATGTCACTTGTGGAGGAAGGAGCAGTGAGACGCATCAATATGTCTCACCTGTGCATTGCTCGGCTCACACGCTGTCAATGGTGTAGCTCGCATCCATTCGGAGATCCTCAAGAAAACCatgtgcagtctccacaagcaccgaaatacctctcttctgagatggggccagc Alignment from CESAR CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCT-GGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCat aaaagagggagaccactaatgctgggtcgattttattctttattctttagCGGGTGGCAGCTGCATTCCCAGGGGATGTAGATAGGCTGTGGCGCATGTCACTTGTGGAGGAAGGAGCAGTGAGACGCATCAATATGTCTCACCTGTGCATTGCTCGGCTCACACGCTGTCAATGGTGTAGCTCGCATCCATTCGGAGATCCTCAAGAAAACCatgtgcagtctccacaagcaccgaaatacctctcttctgagatggggccagc Alignment from Spaln_aa2Genome CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCT-GGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCAT aaaagagggagaccactaatgctgggtcgattttattctttattctttagCGGGTGGCAGCTGCATTCCCAGGGGATGTAGATAGGCTGTGGCGCATGTCACTTGTGGAGGAAGGAGCAGTGAGACGCATCAATATGTCTCACCTGTGCATTGCTcGGCTCACACGCTGTCAATGGTGTAGCTCGCATCCATTCGGAGATCCTCAAGAAAACCATgtgcagtctccacaagcaccgaaatacctctcttctgagatggggccagc Alignment from Spaln_nt2Genome CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCT-GGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCAT aaaagagggagaccactaatgctgggtcgattttattctttattctttagCGGGTGGCAGCTGCATTCCCAGGGGATGTAGATAGGCTGTGGCGCATGTCACTTGTGGAGGAAGGAGCAGTGAGACGCATCAATATGTCTCACCTGTGCATTGCTCGGCTCACACGCTGTCAATGGTGTAGCTCGCATCCATTCGGAGATCCTCAAGAAAACCATgtgcagtctccacaagcaccgaaatacctctcttctgagatggggccagc Alignment from Pairagon CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCT-GGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCAT aaaagagggagaccactaatgctgggtcgattttattctttattctttagCGGGTGGCAGCTGCATTCCCAGGGGATGTAGATAGGCTGTGGCGCATGTCACTTGTGGAGGAAGGAGCAGTGAGACGCATCAATATGTCTCACCTGTGCATTGCTCGGCTCACACGCTGTCAATGGTGTAGCTCGCATCCATTCGGAGATCCTCAAGAAAACCATgtgcagtctccacaagcaccgaaatacctctcttctgagatggggccagc Alignment from Exonerate_protein2genome CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCT-GGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCAT aaaagagggagaccactaatgctgggtcgattttattctttattctttagCGGGTGGCAGCTGCATTCCCAGGGGATGTAGATAGGCTGTGGCGCATGTCACTTGTGGAGGAAGGAGCAGTGAGACGCATCAATATGTCTCACCTGTGCATTGCTCGGCTCACACGCTGTCAATGGTGTAGCTCGCATCCATTCGGAGATCCTCAAGAAAACCATgtgcagtctccacaagcaccgaaatacctctcttctgagatggggccagc Alignment from Exonerate_coding2genome CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAACATGGCACACCTGTGCATTGCT-GGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCAT aaaagagggagaccactaatgctgggtcgattttattctttattctttagCGGGTGGCAGCTGCATTCCCAGGGGATGTAGATAGGCTGTGGCGCATGTCACTTGTGGAGGAAGGAGCAGTGAGACGCATCAATATGTCTCACCTGTGCATTGCTCGGCTCACACGCTGTCAATGGTGTAGCTCGCATCCATTCGGAGATCCTCAAGAAAACCATgtgcagtctccacaagcaccgaaatacctctcttctgagatggggccagc Alignment from GeneWise CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAACATGGCACACCTGTGCATT-GCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCAT aaaagagggagaccactaatgctgggtcgattttattctttattctttagCGGGTGGCAGCTGCATTCCCAGGGGATGTAGATAGGCTGTGGCGCATGTCACTTGTGGAGGAAGGAGCAGTGAGACGCATCAATATGTCTCACCTGTGCATTGCTCGGCTCACACGCTGTCAATGGTGTAGCTCGCATCCATTCGGAGATCCTCAAGAAAACCATgtgcagtctccacaagcaccgaaatacctctcttctgagatggggccagc #### Pygm_ID1688_12 --> 1 - 0 Original Alignment cTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGCTGGCTG-GTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG gagcgcacttcagaggataatggtgaccgccctgcgcccttccctgctagcTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAAACAAATGGCATCACCCCTCGGCGCTGGCTCCGTACTGTGTAACCCTGCGCTGGCAGAGGTCATTGCTGAGgtgagagttcatggtatgattgatagcactttcgacaagtggatcccagc Alignment from CESAR cTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGCTGGCTG-GTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG gagcgcacttcagaggataatggtgaccgccctgcgcccttccctgctagcTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAAACAAATGGCATCACCCCTCGGCGCTGGCTCCGTACTGTGTAACCCTGCGCTGGCAGAGGTCATTGCTGAGgtgagagttcatggtatgattgatagcactttcgacaagtggatcccagc Alignment from Spaln_aa2Genome CTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGCTGGCTG-GTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG gagcgcacttcagaggataatggtgaccgccctgcgcccttccctgctagCTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAAACAAATGGCATCACCCCTCGGCGCTGGCTCcGTACTGTGTAACCCTGCGCTGGCAGAGGTCATTGCTGAGgtgagagttcatggtatgattgatagcactttcgacaagtggatcccagc Alignment from Spaln_nt2Genome CTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGCTGGCTG-GTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG gagcgcacttcagaggataatggtgaccgccctgcgcccttccctgctagCTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAAACAAATGGCATCACCCCTCGGCGCTGGCTCCGTACTGTGTAACCCTGCGCTGGCAGAGGTCATTGCTGAGgtgagagttcatggtatgattgatagcactttcgacaagtggatcccagc Alignment from Pairagon CTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGCTGGCT-GGTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG gagcgcacttcagaggataatggtgaccgccctgcgcccttccctgctagCTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAAACAAATGGCATCACCCCTCGGCGCTGGCTCCGTACTGTGTAACCCTGCGCTGGCAGAGGTCATTGCTGAGgtgagagttcatggtatgattgatagcactttcgacaagtggatcccagc Alignment from Exonerate_protein2genome CTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGCTGGCTG-GTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG gagcgcacttcagaggataatggtgaccgccctgcgcccttccctgctagCTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAAACAAATGGCATCACCCCTCGGCGCTGGCTCCGTACTGTGTAACCCTGCGCTGGCAGAGGTCATTGCTGAGgtgagagttcatggtatgattgatagcactttcgacaagtggatcccagc Alignment from Exonerate_coding2genome CTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGCTGGCTG-GTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG gagcgcacttcagaggataatggtgaccgccctgcgcccttccctgctagCTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAAACAAATGGCATCACCCCTCGGCGCTGGCTCCGTACTGTGTAACCCTGCGCTGGCAGAGGTCATTGCTGAGgtgagagttcatggtatgattgatagcactttcgacaagtggatcccagc Alignment from GeneWise CTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAGACCAATGGCATCACTCCTCGGCGCTGGCTG-GTTCTGTGTAACCCTGGGCTGGCAGAGGTCATTGCTGAG gagcgcacttcagaggataatggtgaccgccctgcgcccttccctgctagCTTCAAGGACTTTTATGAGCTGGAGCCTCACAAGTTCCAGAACAAAACAAATGGCATCACCCCTCGGCGCTGGCTCCGTACTGTGTAACCCTGCGCTGGCAGAGGTCATTGCTGAGgtgagagttcatggtatgattgatagcactttcgacaagtggatcccagc #### Pygm_ID1689_13 --> 0 - 0 Original Alignment CGCATTGGTGAGGACTACATCTCAGACCTGGACCAGCTGCGCAAGCTGCTCTCCTATGTGGATGATGAAGCCTTTATC-CGTGATGTGGCCAAAGTGAAACAG ggatgtaggccaggttagggttgtcctgatgtctcattttcttctctaagCGCATTGGTGAGGACTATGTCTCAGACCTAGACCAGCCACGCAAGCTGCTCTCCTATGTGGATGATGAAGCTTTTATCCCATGATGTGGCCAAAGTGAAACAGgttggtggccctgcaacctggcttcctaccccaagtcaaacatttggaga Alignment from CESAR CGCATTGGTGAGGACTACATCTCAGACCTGGACCAGCTGCGCAAGCTGCTCTCCTATGTGGATGATGAAGCCTTTATC-CGTGATGTGGCCAAAGTGAAACAG ggatgtaggccaggttagggttgtcctgatgtctcattttcttctctaagCGCATTGGTGAGGACTATGTCTCAGACCTAGACCAGCCACGCAAGCTGCTCTCCTATGTGGATGATGAAGCTTTTATCCCATGATGTGGCCAAAGTGAAACAGgttggtggccctgcaacctggcttcctaccccaagtcaaacatttggaga Alignment from Spaln_aa2Genome CGCATTGGTGAGGACTACATCTCAGACCTGGACCAGCTGCGCAAGCTGCTCTCCTATGTGGATGATGAAGCCTTTATC-CGTGATGTGGCCAAAGTGAAACAG ggatgtaggccaggttagggttgtcctgatgtctcattttcttctctaagCGCATTGGTGAGGACTATGTCTCAGACCTAGACCAGCCACGCAAGCTGCTCTCCTATGTGGATGATGAAGCTTTTATCcCATGATGTGGCCAAAGTGAAACAGgttggtggccctgcaacctggcttcctaccccaagtcaaacatttggaga Alignment from Spaln_nt2Genome CGCATTGGTGAGGACTACATCTCAGACCTGGACCAGCTGCGCAAGCTGCTCTCCTATGTGGATGATGAAGCCTTTATCCG-TGATGTGGCCAAAGTGAAACAG ggatgtaggccaggttagggttgtcctgatgtctcattttcttctctaagCGCATTGGTGAGGACTATGTCTCAGACCTAGACCAGCCACGCAAGCTGCTCTCCTATGTGGATGATGAAGCTTTTATCCCATGATGTGGCCAAAGTGAAACAGgttggtggccctgcaacctggcttcctaccccaagtcaaacatttggaga Alignment from Pairagon CGCATTGGTGAGGACTACATCTCAGACCTGGACCAGCTGCGCAAGCTGCTCTCCTATGTGGATGATGAAGCCTTTAT-CCGTGATGTGGCCAAAGTGAAACAG ggatgtaggccaggttagggttgtcctgatgtctcattttcttctctaagCGCATTGGTGAGGACTATGTCTCAGACCTAGACCAGCCACGCAAGCTGCTCTCCTATGTGGATGATGAAGCTTTTATCCCATGATGTGGCCAAAGTGAAACAGgttggtggccctgcaacctggcttcctaccccaagtcaaacatttggaga Alignment from Exonerate_protein2genome CGCATTGGTGAGGACTACATCTCAGACCTGGACCAGCTGCGCAAGCTGCTCTCCTATGTGGATGATGAAGCCTTTATC-CGTGATGTGGCCAAAGTGAAACAG ggatgtaggccaggttagggttgtcctgatgtctcattttcttctctaagCGCATTGGTGAGGACTATGTCTCAGACCTAGACCAGCCACGCAAGCTGCTCTCCTATGTGGATGATGAAGCTTTTATCCCATGATGTGGCCAAAGTGAAACAGgttggtggccctgcaacctggcttcctaccccaagtcaaacatttggaga Alignment from Exonerate_coding2genome CGCATTGGTGAGGACTACATCTCAGACCTGGACCAGCTGCGCAAGCTGCTCTCCTATGTGGATGATGAAGCCTTTATC-CGTGATGTGGCCAAAGTGAAACAG ggatgtaggccaggttagggttgtcctgatgtctcattttcttctctaagCGCATTGGTGAGGACTATGTCTCAGACCTAGACCAGCCACGCAAGCTGCTCTCCTATGTGGATGATGAAGCTTTTATCCCATGATGTGGCCAAAGTGAAACAGgttggtggccctgcaacctggcttcctaccccaagtcaaacatttggaga Alignment from GeneWise CGCATTGGTGAGGACTACATCTCAGACCTGGACCAGCTGCGCAAGCTGCTCTCCTATGTGGATGATGAAGCCTTTATC-CGTGATGTGGCCAAAGTGAAACAG ggatgtaggccaggttagggttgtcctgatgtctcattttcttctctaagCGCATTGGTGAGGACTATGTCTCAGACCTAGACCAGCCACGCAAGCTGCTCTCCTATGTGGATGATGAAGCTTTTATCCCATGATGTGGCCAAAGTGAAACAGgttggtggccctgcaacctggcttcctaccccaagtcaaacatttggaga #### Pygm_ID1695_19 --> 1 - 0 Original Alignment gTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGAC-AAAGTCAGTGAGTTGTACAAG gacctggcctttgccctcacagagctctacttaactctcttacgtatcagaTTTAAAGTCTTTGTAGATCATGAGGAATACATTAAATGCCAGGACCAAAGTCAGTGAGTTGTACAACgtcagctgtccagcaaccaggggttggtagggccttgactctcgtgggga Alignment from CESAR gTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGAC-AAAGTCAGTGAGTTGTACAAG gacctggcctttgccctcacagagctctacttaactctcttacgtatcagaTTTAAAGTCTTTGTAGATCATGAGGAATACATTAAATGCCAGGACCAAAGTCAGTGAGTTGTACAACgtcagctgtccagcaaccaggggttggtagggccttgactctcgtgggga Alignment from Spaln_aa2Genome GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGAC-AAAGTCAGTGAGTTGTACAAG gacctggcctttgccctcacagagctctacttaactctcttacgtatcagATTTAAAGTCTTTGTAGATCATGAGGAATACATTAAATGCCAGGACcAAAGTCAGTGAGTTGTACAACgtcagctgtccagcaaccaggggttggtagggccttgactctcgtgggga Alignment from Spaln_nt2Genome GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGA-CAAAGTCAGTGAGTTGTACAAG gacctggcctttgccctcacagagctctacttaactctcttacgtatcagATTTAAAGTCTTTGTAGATCATGAGGAATACATTAAATGCCAGGACCAAAGTCAGTGAGTTGTACAACgtcagctgtccagcaaccaggggttggtagggccttgactctcgtgggga Alignment from Pairagon GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGA-CAAAGTCAGTGAGTTGTACAAG gacctggcctttgccctcacagagctctacttaactctcttacgtatcagATTTAAAGTCTTTGTAGATCATGAGGAATACATTAAATGCCAGGACCAAAGTCAGTGAGTTGTACAACgtcagctgtccagcaaccaggggttggtagggccttgactctcgtgggga Alignment from Exonerate_protein2genome GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGAC-AAAGTCAGTGAGTTGTACAAG gacctggcctttgccctcacagagctctacttaactctcttacgtatcagATTTAAAGTCTTTGTAGATCATGAGGAATACATTAAATGCCAGGACCAAAGTCAGTGAGTTGTACAACgtcagctgtccagcaaccaggggttggtagggccttgactctcgtgggga Alignment from Exonerate_coding2genome GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGAC-AAAGTCAGTGAGTTGTACAAG gacctggcctttgccctcacagagctctacttaactctcttacgtatcagATTTAAAGTCTTTGTAGATCATGAGGAATACATTAAATGCCAGGACCAAAGTCAGTGAGTTGTACAACgtcagctgtccagcaaccaggggttggtagggccttgactctcgtgggga Alignment from GeneWise GTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGAC-AAAGTCAGTGAGTTGTACAAG gacctggcctttgccctcacagagctctacttaactctcttacgtatcagATTTAAAGTCTTTGTAGATCATGAGGAATACATTAAATGCCAGGACCAAAGTCAGTGAGTTGTACAACgtcagctgtccagcaaccaggggttggtagggccttgactctcgtgggga #### Rab1b_ID845_3 --> 0 - 0 Original Alignment GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTG-GACGGCAAAACCATCAAACTGCAGATT tgcttagtcttcctgtctgctcaacctacctgtgacatgattctcttcagGATGACACTTACACAGAGAGCTACATCAGCACCATTGGTGTGGACTTTAAGATACGAACCATTAAGCTGCGATGGCAAAACCATCAAACTGCAGATTgtaggaataagccctctccagacatccgaagacatccgacaaaaatggat Alignment from CESAR GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTG-GACGGCAAAACCATCAAACTGCAGATT tgcttagtcttcctgtctgctcaacctacctgtgacatgattctcttcagGATGACACTTACACAGAGAGCTACATCAGCACCATTGGTGTGGACTTTAAGATACGAACCATTAAGCTGCGATGGCAAAACCATCAAACTGCAGATTgtaggaataagccctctccagacatccgaagacatccgacaaaaatggat Alignment from Spaln_aa2Genome GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTG-GACGGCAAAACCATCAAACTGCAGATT tgcttagtcttcctgtctgctcaacctacctgtgacatgattctcttcagGATGACACTTACACAGAGAGCTACATCAGCACCATTGGTGTGGACTTTAAGATACGAACCATTAAGCTGcGATGGCAAAACCATCAAACTGCAGATTgtaggaataagccctctccagacatccgaagacatccgacaaaaatggat Alignment from Spaln_nt2Genome GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTG-GACGGCAAAACCATCAAACTGCAGATT tgcttagtcttcctgtctgctcaacctacctgtgacatgattctcttcagGATGACACTTACACAGAGAGCTACATCAGCACCATTGGTGTGGACTTTAAGATACGAACCATTAAGCTGCGATGGCAAAACCATCAAACTGCAGATTgtaggaataagccctctccagacatccgaagacatccgacaaaaatggat Alignment from Pairagon GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTG-GACGGCAAAACCATCAAACTGCAGATT tgcttagtcttcctgtctgctcaacctacctgtgacatgattctcttcagGATGACACTTACACAGAGAGCTACATCAGCACCATTGGTGTGGACTTTAAGATACGAACCATTAAGCTGCGATGGCAAAACCATCAAACTGCAGATTgtaggaataagccctctccagacatccgaagacatccgacaaaaatggat Alignment from Exonerate_protein2genome GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTG-GACGGCAAAACCATCAAACTGCAGATT tgcttagtcttcctgtctgctcaacctacctgtgacatgattctcttcagGATGACACTTACACAGAGAGCTACATCAGCACCATTGGTGTGGACTTTAAGATACGAACCATTAAGCTGCGATGGCAAAACCATCAAACTGCAGATTgtaggaataagccctctccagacatccgaagacatccgacaaaaatggat Alignment from Exonerate_coding2genome GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTG-GACGGCAAAACCATCAAACTGCAGATT tgcttagtcttcctgtctgctcaacctacctgtgacatgattctcttcagGATGACACTTACACAGAGAGCTACATCAGCACCATTGGTGTGGACTTTAAGATACGAACCATTAAGCTGCGATGGCAAAACCATCAAACTGCAGATTgtaggaataagccctctccagacatccgaagacatccgacaaaaatggat Alignment from GeneWise GATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAG-CTGGACGGCAAAACCATCAAACTGCAGATT tgcttagtcttcctgtctgctcaacctacctgtgacatgattctcttcagGATGACACTTACACAGAGAGCTACATCAGCACCATTGGTGTGGACTTTAAGATACGAACCATTAAGCTGCGATGGCAAAACCATCAAACTGCAGATTgtaggaataagccctctccagacatccgaagacatccgacaaaaatggat #### Rasgrp2_ID1707_6 --> 0 - 0 Original Alignment TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAAC-AGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG caaggatgggagtggctaacaggatgctgactttctttcattttacaaagTTCCAAGACTACCACAGTTTTGTGACGCATGGCTGCACTGTAGACAACCCAGTCCTGGAGCGATTCATCTCTCTCTTCAACCAGTGTGCCTCAGTGGGTCCAGCTAATGATCCTCAGCAAGCCCACAGCCACACAGCAGGCACTGGTCATTACCCACTTCGTGCATGTGGCAGAGgtgagtacctttccagtgtgtccagaccagattctatgtgcacatcaagc Alignment from CESAR TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAAC-AGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG caaggatgggagtggctaacaggatgctgactttctttcattttacaaagTTCCAAGACTACCACAGTTTTGTGACGCATGGCTGCACTGTAGACAACCCAGTCCTGGAGCGATTCATCTCTCTCTTCAACCAGTGTGCCTCAGTGGGTCCAGCTAATGATCCTCAGCAAGCCCACAGCCACACAGCAGGCACTGGTCATTACCCACTTCGTGCATGTGGCAGAGgtgagtacctttccagtgtgtccagaccagattctatgtgcacatcaagc Alignment from Spaln_aa2Genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAAC-AGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG caaggatgggagtggctaacaggatgctgactttctttcattttacaaagTTCCAAGACTACCACAGTTTTGTGACGCATGGCTGCACTGTAGACAACCCAGTCCTGGAGCGATTCATCTCTCTCTTCAACcAGTGTGCCTCAGTGGGTCCAGCTAATGATCCTCAGCAAGCCCACAGCCACACAGCAGGCACTGGTCATTACCCACTTCGTGCATGTGGCAGAGgtgagtacctttccagtgtgtccagaccagattctatgtgcacatcaagc Alignment from Spaln_nt2Genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAA-CAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG caaggatgggagtggctaacaggatgctgactttctttcattttacaaagTTCCAAGACTACCACAGTTTTGTGACGCATGGCTGCACTGTAGACAACCCAGTCCTGGAGCGATTCATCTCTCTCTTCAACCAGTGTGCCTCAGTGGGTCCAGCTAATGATCCTCAGCAAGCCCACAGCCACACAGCAGGCACTGGTCATTACCCACTTCGTGCATGTGGCAGAGgtgagtacctttccagtgtgtccagaccagattctatgtgcacatcaagc Alignment from Pairagon TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAA-CAGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG caaggatgggagtggctaacaggatgctgactttctttcattttacaaagTTCCAAGACTACCACAGTTTTGTGACGCATGGCTGCACTGTAGACAACCCAGTCCTGGAGCGATTCATCTCTCTCTTCAACCAGTGTGCCTCAGTGGGTCCAGCTAATGATCCTCAGCAAGCCCACAGCCACACAGCAGGCACTGGTCATTACCCACTTCGTGCATGTGGCAGAGgtgagtacctttccagtgtgtccagaccagattctatgtgcacatcaagc Alignment from Exonerate_protein2genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAAC-AGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG caaggatgggagtggctaacaggatgctgactttctttcattttacaaagTTCCAAGACTACCACAGTTTTGTGACGCATGGCTGCACTGTAGACAACCCAGTCCTGGAGCGATTCATCTCTCTCTTCAACCAGTGTGCCTCAGTGGGTCCAGCTAATGATCCTCAGCAAGCCCACAGCCACACAGCAGGCACTGGTCATTACCCACTTCGTGCATGTGGCAGAGgtgagtacctttccagtgtgtccagaccagattctatgtgcacatcaagc Alignment from Exonerate_coding2genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAAC-AGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG caaggatgggagtggctaacaggatgctgactttctttcattttacaaagTTCCAAGACTACCACAGTTTTGTGACGCATGGCTGCACTGTAGACAACCCAGTCCTGGAGCGATTCATCTCTCTCTTCAACCAGTGTGCCTCAGTGGGTCCAGCTAATGATCCTCAGCAAGCCCACAGCCACACAGCAGGCACTGGTCATTACCCACTTCGTGCATGTGGCAGAGgtgagtacctttccagtgtgtccagaccagattctatgtgcacatcaagc Alignment from GeneWise TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAAC-AGTGTCTCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG caaggatgggagtggctaacaggatgctgactttctttcattttacaaagTTCCAAGACTACCACAGTTTTGTGACGCATGGCTGCACTGTAGACAACCCAGTCCTGGAGCGATTCATCTCTCTCTTCAACCAGTGTGCCTCAGTGGGTCCAGCTAATGATCCTCAGCAAGCCCACAGCCACACAGCAGGCACTGGTCATTACCCACTTCGTGCATGTGGCAGAGgtgagtacctttccagtgtgtccagaccagattctatgtgcacatcaagc #### Rasgrp2_ID1711_10 --> 0 - 0 Original Alignment CCAACCAGCCCC-ACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctgaccctggttaaagttctctgttttcctgaagCCTACCAGCCCTCACCAGCTGCATGCCACCTCCCCGGCCCCCAGTGTTGGAAGAGTGGACATCAGTTGCCAAACCTAATCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtaagtgtatgctggctttcctaaagccttacccagcgcccagtgagcca Alignment from CESAR CCAACCAGCCCC-ACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctgaccctggttaaagttctctgttttcctgaagCCTACCAGCCCTCACCAGCTGCATGCCACCTCCCCGGCCCCCAGTGTTGGAAGAGTGGACATCAGTTGCCAAACCTAATCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtaagtgtatgctggctttcctaaagccttacccagcgcccagtgagcca Alignment from Spaln_aa2Genome GCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctgaccctggttaaagttctctgttttcctgaagcctaccagCCCTCACCAGCTGCATGCCACCTCCCCGGCCCCCAGTGTTGGAAGAGTGGACATCAGTTGCCAAACCTAATCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtaagtgtatgctggctttcctaaagccttacccagcgcccagtgagcca Alignment from Spaln_nt2Genome CCAACCAGCCC-CACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctgaccctggttaaagttctctgttttcctgaagCCTACCAGCCCTCACCAGCTGCATGCCACCTCCCCGGCCCCCAGTGTTGGAAGAGTGGACATCAGTTGCCAAACCTAATCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtaagtgtatgctggctttcctaaagccttacccagcgcccagtgagcca Alignment from Pairagon CCAACCAGCCC-CACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctgaccctggttaaagttctctgttttcctgaagCCTACCAGCCCTCACCAGCTGCATGCCACCTCCCCGGCCCCCAGTGTTGGAAGAGTGGACATCAGTTGCCAAACCTAATCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtaagtgtatgctggctttcctaaagccttacccagcgcccagtgagcca Alignment from Exonerate_protein2genome CCAACCAGCCCC-ACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctgaccctggttaaagttctctgttttcctgaagCCTACCAGCCCTCACCAGCTGCATGCCACCTCCCCGGCCCCCAGTGTTGGAAGAGTGGACATCAGTTGCCAAACCTAATCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtaagtgtatgctggctttcctaaagccttacccagcgcccagtgagcca Alignment from Exonerate_coding2genome CCAACCAGCCCC-ACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctgaccctggttaaagttctctgttttcctgaagCCTACCAGCCCTCACCAGCTGCATGCCACCTCCCCGGCCCCCAGTGTTGGAAGAGTGGACATCAGTTGCCAAACCTAATCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtaagtgtatgctggctttcctaaagccttacccagcgcccagtgagcca Alignment from GeneWise CCAACCAGCCCC-ACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG tagattcattcctgctctgaccctggttaaagttctctgttttcctgaagCCTACCAGCCCTCACCAGCTGCATGCCACCTCCCCGGCCCCCAGTGTTGGAAGAGTGGACATCAGTTGCCAAACCTAATCTGGACCAGGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAGgtaagtgtatgctggctttcctaaagccttacccagcgcccagtgagcca #### Rbp4_ID7524_3 --> 0 - 2 Original Alignment TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTG-GACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGag tactgtgggtgggaggtggaacccagaccttccctgccttgtttctgcagTTCTCAGGGCTCTGGTACGCTATTGCCAAAAAGGACCCCGAGGGGCTCTTTTTGCAAGACAATATCATTGCTGAGTTTTCTGTACGACGAGAAGGGTCATATGAGCGCCACCGCCAAGGGACAGGTCCGTCTTCTGaggtgagtggcctaaggtgggctgtgtgcagcatactgaacttcctgccacc Alignment from CESAR TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTG-GACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGag tactgtgggtgggaggtggaacccagaccttccctgccttgtttctgcagTTCTCAGGGCTCTGGTACGCTATTGCCAAAAAGGACCCCGAGGGGCTCTTTTTGCAAGACAATATCATTGCTGAGTTTTCTGTACGACGAGAAGGGTCATATGAGCGCCACCGCCAAGGGACAGGTCCGTCTTCTGaggtgagtggcctaaggtgggctgtgtgcagcatactgaacttcctgccacc Alignment from Spaln_aa2Genome TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTG-GACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG tactgtgggtgggaggtggaacccagaccttccctgccttgtttctgcagTTCTCAGGGCTCTGGTACGCTATTGCCAAAAAGGACCCCGAGGGGCTCTTTTTGCAAGACAATATCATTGCTGAGTTTTCTGTAcGACGAGAAGGGTCATATGAGCGCCACCGCCAAGGGACAGGTCCGTCTTCTGAGgtgagtggcctaaggtgggctgtgtgcagcatactgaacttcctgccacc Alignment from Spaln_nt2Genome TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTG-GACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG tactgtgggtgggaggtggaacccagaccttccctgccttgtttctgcagTTCTCAGGGCTCTGGTACGCTATTGCCAAAAAGGACCCCGAGGGGCTCTTTTTGCAAGACAATATCATTGCTGAGTTTTCTGTACGACGAGAAGGGTCATATGAGCGCCACCGCCAAGGGACAGGTCCGTCTTCTGAGgtgagtggcctaaggtgggctgtgtgcagcatactgaacttcctgccacc Alignment from Pairagon TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTG-GACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG tactgtgggtgggaggtggaacccagaccttccctgccttgtttctgcagTTCTCAGGGCTCTGGTACGCTATTGCCAAAAAGGACCCCGAGGGGCTCTTTTTGCAAGACAATATCATTGCTGAGTTTTCTGTACGACGAGAAGGGTCATATGAGCGCCACCGCCAAGGGACAGGTCCGTCTTCTGAGgtgagtggcctaaggtgggctgtgtgcagcatactgaacttcctgccacc Alignment from Exonerate_protein2genome TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTG-GACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG tactgtgggtgggaggtggaacccagaccttccctgccttgtttctgcagTTCTCAGGGCTCTGGTACGCTATTGCCAAAAAGGACCCCGAGGGGCTCTTTTTGCAAGACAATATCATTGCTGAGTTTTCTGTACGACGAGAAGGGTCATATGAGCGCCACCGCCAAGGGACAGGTCCGTCTTCTGAGgtgagtggcctaaggtgggctgtgtgcagcatactgaacttcctgccacc Alignment from Exonerate_coding2genome TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTG-GACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG tactgtgggtgggaggtggaacccagaccttccctgccttgtttctgcagTTCTCAGGGCTCTGGTACGCTATTGCCAAAAAGGACCCCGAGGGGCTCTTTTTGCAAGACAATATCATTGCTGAGTTTTCTGTACGACGAGAAGGGTCATATGAGCGCCACCGCCAAGGGACAGGTCCGTCTTCTGAGgtgagtggcctaaggtgggctgtgtgcagcatactgaacttcctgccacc Alignment from GeneWise TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCT-GTGGACGAGAAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG tactgtgggtgggaggtggaacccagaccttccctgccttgtttctgcagTTCTCAGGGCTCTGGTACGCTATTGCCAAAAAGGACCCCGAGGGGCTCTTTTTGCAAGACAATATCATTGCTGAGTTTTCTGTACGACGAGAAGGGTCATATGAGCGCCACCGCCAAGGGACAGGTCCGTCTTCTGAGgtgagtggcctaaggtgggctgtgtgcagcatactgaacttcctgccacc #### Rbp4_ID7525_2 --> 0 - 0 Original Alignment GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGC-GGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggtcctttacccctgggtatcatatcctcttccctgacagGGCAGTCTCCGAGGTGAGATGGCGTGGGTGTGGGCGCTCGTGCTGCTGGCAGCTCTGGGAGGTCGGCAGTGCTGAGCGTGACTGCAGGGTGAGCAGCTTCCGAGTTAAAGAAAACTTTGACAAGGCTCATgtaagaatcagcccagttttcctaattactgtgggtgggaggtggaaccc Alignment from CESAR GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGC-GGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggtcctttacccctgggtatcatatcctcttccctgacagGGCAGTCTCCGAGGTGAGATGGCGTGGGTGTGGGCGCTCGTGCTGCTGGCAGCTCTGGGAGGTCGGCAGTGCTGAGCGTGACTGCAGGGTGAGCAGCTTCCGAGTTAAAGAAAACTTTGACAAGGCTCATgtaagaatcagcccagttttcctaattactgtgggtgggaggtggaaccc Alignment from Spaln_aa2Genome GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGC-GGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggtcctttacccctgggtatcatatcctcttccctgacagGGCAGTCTCCGAGGTGAGATGGCGTGGGTGTGGGCGCTCGTGCTGCTGGCAGCTCTGGGAGGTcGGCAGTGCTGAGCGTGACTGCAGGGTGAGCAGCTTCCGAGTTAAAGAAAACTTTGACAAGGCTCATgtaagaatcagcccagttttcctaattactgtgggtgggaggtggaaccc Alignment from Spaln_nt2Genome GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCT-GGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggtcctttacccctgggtatcatatcctcttccctgacagGGCAGTCTCCGAGGTGAGATGGCGTGGGTGTGGGCGCTCGTGCTGCTGGCAGCTCTGGGAGGTCGGCAGTGCTGAGCGTGACTGCAGGGTGAGCAGCTTCCGAGTTAAAGAAAACTTTGACAAGGCTCATgtaagaatcagcccagttttcctaattactgtgggtgggaggtggaaccc Alignment from Pairagon GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGG-CGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggtcctttacccctgggtatcatatcctcttccctgacagGGCAGTCTCCGAGGTGAGATGGCGTGGGTGTGGGCGCTCGTGCTGCTGGCAGCTCTGGGAGGTCGGCAGTGCTGAGCGTGACTGCAGGGTGAGCAGCTTCCGAGTTAAAGAAAACTTTGACAAGGCTCATgtaagaatcagcccagttttcctaattactgtgggtgggaggtggaaccc Alignment from Exonerate_protein2genome GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGC-GGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggtcctttacccctgggtatcatatcctcttccctgacagGGCAGTCTCCGAGGTGAGATGGCGTGGGTGTGGGCGCTCGTGCTGCTGGCAGCTCTGGGAGGTCGGCAGTGCTGAGCGTGACTGCAGGGTGAGCAGCTTCCGAGTTAAAGAAAACTTTGACAAGGCTCATgtaagaatcagcccagttttcctaattactgtgggtgggaggtggaaccc Alignment from Exonerate_coding2genome GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGC-GGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggtcctttacccctgggtatcatatcctcttccctgacagGGCAGTCTCCGAGGTGAGATGGCGTGGGTGTGGGCGCTCGTGCTGCTGGCAGCTCTGGGAGGTCGGCAGTGCTGAGCGTGACTGCAGGGTGAGCAGCTTCCGAGTTAAAGAAAACTTTGACAAGGCTCATgtaagaatcagcccagttttcctaattactgtgggtgggaggtggaaccc Alignment from GeneWise GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGC-GGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggtcctttacccctgggtatcatatcctcttccctgacagGGCAGTCTCCGAGGTGAGATGGCGTGGGTGTGGGCGCTCGTGCTGCTGGCAGCTCTGGGAGGTCGGCAGTGCTGAGCGTGACTGCAGGGTGAGCAGCTTCCGAGTTAAAGAAAACTTTGACAAGGCTCATgtaagaatcagcccagttttcctaattactgtgggtgggaggtggaaccc #### Rce1_ID576_6 --> 2 - 1 Original Alignment TCTTTTTTGGAGTCg ccCATTTTCACCACATTATTGAGCAGCTG-CGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAg TCTTTTTTGGAGTTggtgagcctcaccttgtaaggccgtctttatttcagccCATTTTCACCACATTATTGAGCAGTTACCGCTTCCGCCAGAGCAGTGTGGGGAGTATCTTTGTGTCTGCAggtgagacctggagacatactgagttggtcaaggggtcaaggggtggagtg Alignment from CESAR TCTTTTTTGGAGTCg ccCATTTTCACCACATTATTGAGCAGCTG-CGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAg TCTTTTTTGGAGTTggtgcctctcaccttgtaaggccgtctttatttcagccCATTTTCACCACATTATTGAGCAGTTACCGCTTCCGCCAGAGCAGTGTGGGGAGTATCTTTGTGTCTGCAggtgagacctggagacatactgagttggtcaaggggtcaaggggtggagtg Alignment from Spaln_aa2Genome TCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTG-CGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG TCTTTTTTGGAGTTGgtgagcctcaccttgtaaggccgtctttatttcagCCCATTTTCACCACATTATTGAGCAGTTAcCGCTTCCGCCAGAGCAGTGTGGGGAGTATCTTTGTGTCTGCAGgtgagacctggagacatactgagttggtcaaggggtcaaggggtggagtg Alignment from Spaln_nt2Genome TCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGC-GCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG TCTTTTTTGGAGTTGgtgagcctcaccttgtaaggccgtctttatttcagCCCATTTTCACCACATTATTGAGCAGTTACCGCTTCCGCCAGAGCAGTGTGGGGAGTATCTTTGTGTCTGCAGgtgagacctggagacatactgagttggtcaaggggtcaaggggtggagtg Alignment from Pairagon TCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTG-CGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG TCTTTTTTGGAGTTGgtgagcctcaccttgtaaggccgtctttatttcagCCCATTTTCACCACATTATTGAGCAGTTACCGCTTCCGCCAGAGCAGTGTGGGGAGTATCTTTGTGTCTGCAGgtgagacctggagacatactgagttggtcaaggggtcaaggggtggagtg Alignment from Exonerate_protein2genome TCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTG-CGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG TCTTTTTTGGAGTTGgtgagcctcaccttgtaaggccgtctttatttcagCCCATTTTCACCACATTATTGAGCAGTTACCGCTTCCGCCAGAGCAGTGTGGGGAGTATCTTTGTGTCTGCAGgtgagacctggagacatactgagttggtcaaggggtcaaggggtggagtg Alignment from Exonerate_coding2genome TCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTG-CGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG TCTTTTTTGGAGTTGgtgagcctcaccttgtaaggccgtctttatttcagCCCATTTTCACCACATTATTGAGCAGTTACCGCTTCCGCCAGAGCAGTGTGGGGAGTATCTTTGTGTCTGCAGgtgagacctggagacatactgagttggtcaaggggtcaaggggtggagtg Alignment from GeneWise TCTTTTTTGGAGTCGCCCATTTTCACCACATT------------------------------------ATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG TCTTTTTTGGAGTTGGTGAGCCTCACCTTGTAAGGCCGTCTTTATTTCAGCCCATTTTCACCACATTATTGAGCAGTTACCGCTTCCGCCAGAGCAGTGTGGGGAGTATCTTTGTGTCTGCAGgtgagacctggagacatactgagttggtcaaggggtcaaggggtggagtg #### Rce1_ID580_2 --> 1 - 0 Original Alignment gGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGG-AGGGAACTCACTGGCATCCAG atcagtatggttgctgtacgcctcccagctggactgcttccctgccacaggGACCACCCCACTGTTATCAAGCGGCGTTCCACTAGTGTCCTTGTAGTGTCCAGCTTGTCCCCTCTTTGTGTGCTGCTCTGGCAGGGAACTCACTGGTATCCAGgtaagaaggaggagggtggggcactgggcagcaagggaagaatctagaat Alignment from CESAR gGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGG-AGGGAACTCACTGGCATCCAG atcagtatggttgctgtacgcctcccagctggactgcttccctgccacaggGACCACCCCACTGTTATCAAGCGGCGTTCCACTAGTGTCCTTGTAGTGTCCAGCTTGTCCCCTCTTTGTGTGCTGCTCTGGCAGGGAACTCACTGGTATCCAGgtaagaaggaggagggtggggcactgggcagcaagggaagaatctagaat Alignment from Spaln_aa2Genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGG-AGGGAACTCACTGGCATCCAG atcagtatggttgctgtacgcctcccagctggactgcttccctgccacagGGACCACCCCACTGTTATCAAGCGGCGTTCCACTAGTGTCCTTGTAGTGTCCAGCTTGTCCCCTCTTTGTGTGCTGCTCTGGcAGGGAACTCACTGGTATCCAGgtaagaaggaggagggtggggcactgggcagcaagggaagaatctagaat Alignment from Spaln_nt2Genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGG-AGGGAACTCACTGGCATCCAG atcagtatggttgctgtacgcctcccagctggactgcttccctgccacagGGACCACCCCACTGTTATCAAGCGGCGTTCCACTAGTGTCCTTGTAGTGTCCAGCTTGTCCCCTCTTTGTGTGCTGCTCTGGCAGGGAACTCACTGGTATCCAGgtaagaaggaggagggtggggcactgggcagcaagggaagaatctagaat Alignment from Pairagon GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGG-AGGGAACTCACTGGCATCCAG atcagtatggttgctgtacgcctcccagctggactgcttccctgccacagGGACCACCCCACTGTTATCAAGCGGCGTTCCACTAGTGTCCTTGTAGTGTCCAGCTTGTCCCCTCTTTGTGTGCTGCTCTGGCAGGGAACTCACTGGTATCCAGgtaagaaggaggagggtggggcactgggcagcaagggaagaatctagaat Alignment from Exonerate_protein2genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGG-AGGGAACTCACTGGCATCCAG atcagtatggttgctgtacgcctcccagctggactgcttccctgccacagGGACCACCCCACTGTTATCAAGCGGCGTTCCACTAGTGTCCTTGTAGTGTCCAGCTTGTCCCCTCTTTGTGTGCTGCTCTGGCAGGGAACTCACTGGTATCCAGgtaagaaggaggagggtggggcactgggcagcaagggaagaatctagaat Alignment from Exonerate_coding2genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGG-AGGGAACTCACTGGCATCCAG atcagtatggttgctgtacgcctcccagctggactgcttccctgccacagGGACCACCCCACTGTTATCAAGCGGCGTTCCACTAGTGTCCTTGTAGTGTCCAGCTTGTCCCCTCTTTGTGTGCTGCTCTGGCAGGGAACTCACTGGTATCCAGgtaagaaggaggagggtggggcactgggcagcaagggaagaatctagaat Alignment from GeneWise GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGG-AGGGAACTCACTGGCATCCAG atcagtatggttgctgtacgcctcccagctggactgcttccctgccacagGGACCACCCCACTGTTATCAAGCGGCGTTCCACTAGTGTCCTTGTAGTGTCCAGCTTGTCCCCTCTTTGTGTGCTGCTCTGGCAGGGAACTCACTGGTATCCAGgtaagaaggaggagggtggggcactgggcagcaagggaagaatctagaat #### Rcor2_ID2091_2 --> 2 - 1 Original Alignment agAGCCCTGCACGCTATAGCAACAAGGAGCTGAAG-GGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAAc cttctgggcctgacctccacctccttgcttccacccatcatccaccacagagAGCCCTGCACGCTATAGCAACAAGGAGCTAAAGCGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAAcgtaggcgcactgggccttggtcatattcagttccaggaagagggtttgac Alignment from CESAR agAGCCCTGCACGCTATAGCAACAAGGAGCTGAAG-GGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAAc cttctgggcctgacctccacctccttgcttccacccatcatccaccacagagAGCCCTGCACGCTATAGCAACAAGGAGCTAAAGCGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAAcgtaggcgcactgggccttggtcatattcagttccaggaagagggtttgac Alignment from Spaln_aa2Genome AGAGCCCTGCACGCTATAGCAACAAGGAGCTGAAG-GGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAAC cttctgggcctgacctccacctccttgcttccacccatcatccaccacagAGAGCCCTGCACGCTATAGCAACAAGGAGCTAAAGcGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAACgtaggcgcactgggccttggtcatattcagttccaggaagagggtttgac Alignment from Spaln_nt2Genome AGAGCCCTGCACGCTATAGCAACAAGGAGCTGAAG-GGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAAC cttctgggcctgacctccacctccttgcttccacccatcatccaccacagAGAGCCCTGCACGCTATAGCAACAAGGAGCTAAAGCGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAACgtaggcgcactgggccttggtcatattcagttccaggaagagggtttgac Alignment from Pairagon AGAGCCCTGCACGCTATAGCAACAAGGAGCTGAAG-GGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAAC cttctgggcctgacctccacctccttgcttccacccatcatccaccacagAGAGCCCTGCACGCTATAGCAACAAGGAGCTAAAGCGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAACgtaggcgcactgggccttggtcatattcagttccaggaagagggtttgac Alignment from Exonerate_protein2genome AGAGCCCTGCACGCTATAGCAACAAGGAGCTGAAG-GGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAAC cttctgggcctgacctccacctccttgcttccacccatcatccaccacagAGAGCCCTGCACGCTATAGCAACAAGGAGCTAAAGCGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAACgtaggcgcactgggccttggtcatattcagttccaggaagagggtttgac Alignment from Exonerate_coding2genome AGAGCCCTGCACGCTATAGCAACAAGGAGCTGAAG-GGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAAC cttctgggcctgacctccacctccttgcttccacccatcatccaccacagAGAGCCCTGCACGCTATAGCAACAAGGAGCTAAAGCGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAACgtaggcgcactgggccttggtcatattcagttccaggaagagggtttgac Alignment from GeneWise AGAGCCCTGCACGCTATAGCAACAAGGAGCTG-AAGGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAAC cttctgggcctgacctccacctccttgcttccacccatcatccaccacagAGAGCCCTGCACGCTATAGCAACAAGGAGCTAAAGCGGAATGCTGGTGTGGTCCCCCAACCACTGTGTATCAGATGCCAAACgtaggcgcactgggccttggtcatattcagttccaggaagagggtttgac #### Rcor2_ID2092_3 --> 2 - 0 Original Alignment ttGACAAGTACATTGCAATGGCCAAGGAGAAGCATGGC-TATAACATTGAGCAG gtggtctttgctgtggggctactgtgtgttctgtcatgtctcccccctagttGACAAGTACATCGCAATGGCCAAGGAGAAGCATGGCCTATAACATTGAGCAGgtaagggaggtcctgagaaatccttagggatggaagtggggcccaccagg Alignment from CESAR ttGACAAGTACATTGCAATGGCCAAGGAGAAGCATGGC-TATAACATTGAGCAG gtggtctttgctgtggggctactgtgtgttctgtcatgtctcccccctagttGACAAGTACATCGCAATGGCCAAGGAGAAGCATGGCCTATAACATTGAGCAGgtaagggaggtcctgagaaatccttagggatggaagtggggcccaccagg Alignment from Spaln_aa2Genome TTGACAAGTACATTGCAATGGCCAAGGAGAAGCATGGC-TATAACATTGAGCAG gtggtctttgctgtggggctactgtgtgttctgtcatgtctcccccctagTTGACAAGTACATCGCAATGGCCAAGGAGAAGCATGGCcTATAACATTGAGCAGgtaagggaggtcctgagaaatccttagggatggaagtggggcccaccagg Alignment from Spaln_nt2Genome TTGACAAGTACATTGCAATGGCCAAGGAGAAGCATGG-CTATAACATTGAGCAG gtggtctttgctgtggggctactgtgtgttctgtcatgtctcccccctagTTGACAAGTACATCGCAATGGCCAAGGAGAAGCATGGCCTATAACATTGAGCAGgtaagggaggtcctgagaaatccttagggatggaagtggggcccaccagg Alignment from Pairagon TTGACAAGTACATTGCAATGGCCAAGGAGAAGCATGG-CTATAACATTGAGCAG gtggtctttgctgtggggctactgtgtgttctgtcatgtctcccccctagTTGACAAGTACATCGCAATGGCCAAGGAGAAGCATGGCCTATAACATTGAGCAGgtaagggaggtcctgagaaatccttagggatggaagtggggcccaccagg Alignment from Exonerate_protein2genome TTGACAAGTACATTGCAATGGCCAAGGAGAAGCATGGC-TATAACATTGAGCAG gtggtctttgctgtggggctactgtgtgttctgtcatgtctcccccctagTTGACAAGTACATCGCAATGGCCAAGGAGAAGCATGGCCTATAACATTGAGCAGgtaagggaggtcctgagaaatccttagggatggaagtggggcccaccagg Alignment from Exonerate_coding2genome TTGACAAGTACATTGCAATGGCCAAGGAGAAGCATGGC-TATAACATTGAGCAG gtggtctttgctgtggggctactgtgtgttctgtcatgtctcccccctagTTGACAAGTACATCGCAATGGCCAAGGAGAAGCATGGCCTATAACATTGAGCAGgtaagggaggtcctgagaaatccttagggatggaagtggggcccaccagg Alignment from GeneWise TTGACAAGTACATTGCAATGGCCAAGGAGAAGCAT-GGCTATAACATTGAGCAG gtggtctttgctgtggggctactgtgtgttctgtcatgtctcccccctagTTGACAAGTACATCGCAATGGCCAAGGAGAAGCATGGCCTATAACATTGAGCAGgtaagggaggtcctgagaaatccttagggatggaagtggggcccaccagg #### Rcor2_ID2095_6 --> 1 - 0 Original Alignment tGATGAACTAGAAGAGGGACGAGGA-GCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tattctgagttgggccttccctcatttttttttttttcccctttccacagtGATGAACTAGAAGAGGGACGGGGACGCTGTGAGCGAGGGGGAGCCGGATACTGGAGACCCCAAGCGAAAGgtgagttccactagctcatctgtcctacccacccctaagcttgtccccgg Alignment from CESAR tGATGAACTAGAAGAGGGACGAGGA-GCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tattctgagttgggccttccctcatttttttttttttcccctttccacagtGATGAACTAGAAGAGGGACGGGGACGCTGTGAGCGAGGGGGAGCCGGATACTGGAGACCCCAAGCGAAAGgtgagttccactagctcatctgtcctacccacccctaagcttgtccccgg Alignment from Spaln_aa2Genome TGATGAACTAGAAGAGGGACGAGGA-GCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tattctgagttgggccttccctcatttttttttttttcccctttccacagTGATGAACTAGAAGAGGGACGGGGAcGCTGTGAGCGAGGGGGAGCCGGATACTGGAGACCCCAAGCGAAAGgtgagttccactagctcatctgtcctacccacccctaagcttgtccccgg Alignment from Spaln_nt2Genome TGATGAACTAGAAGAGGGACGAGGA-GCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tattctgagttgggccttccctcatttttttttttttcccctttccacagTGATGAACTAGAAGAGGGACGGGGACGCTGTGAGCGAGGGGGAGCCGGATACTGGAGACCCCAAGCGAAAGgtgagttccactagctcatctgtcctacccacccctaagcttgtccccgg Alignment from Pairagon TGATGAACTAGAAGAGGGACGAGGA-GCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tattctgagttgggccttccctcatttttttttttttcccctttccacagTGATGAACTAGAAGAGGGACGGGGACGCTGTGAGCGAGGGGGAGCCGGATACTGGAGACCCCAAGCGAAAGgtgagttccactagctcatctgtcctacccacccctaagcttgtccccgg Alignment from Exonerate_protein2genome TGATGAACTAGAAGAGGGACGAGGA-GCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tattctgagttgggccttccctcatttttttttttttcccctttccacagTGATGAACTAGAAGAGGGACGGGGACGCTGTGAGCGAGGGGGAGCCGGATACTGGAGACCCCAAGCGAAAGgtgagttccactagctcatctgtcctacccacccctaagcttgtccccgg Alignment from Exonerate_coding2genome TGATGAACTAGAAGAGGGACGAGGA-GCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tattctgagttgggccttccctcatttttttttttttcccctttccacagTGATGAACTAGAAGAGGGACGGGGACGCTGTGAGCGAGGGGGAGCCGGATACTGGAGACCCCAAGCGAAAGgtgagttccactagctcatctgtcctacccacccctaagcttgtccccgg Alignment from GeneWise TGATGAACTAGAAGAGGGACGAGGA-GCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tattctgagttgggccttccctcatttttttttttttcccctttccacagTGATGAACTAGAAGAGGGACGGGGACGCTGTGAGCGAGGGGGAGCCGGATACTGGAGACCCCAAGCGAAAGgtgagttccactagctcatctgtcctacccacccctaagcttgtccccgg #### Rcor2_ID2098_9 --> 0 - 1 Original Alignment GCTAATACCAAGTTCAACTCCCGCTGGACC-ACTGATGAGCAACTTCTAGCTGTTCAAg tccatatttttggcttcgcttgacggtccaacctcacgtgtcctttgcagGCTAATACCAAGTTCAACTCCCGCTGGACCCACTGATGAGCAACTTCTAGCAGTTCAAggttcgtcaggccattgtgagtcccaagaactctagagacctttaatcttt Alignment from CESAR GCTAATACCAAGTTCAACTCCCGCTGGACC-ACTGATGAGCAACTTCTAGCTGTTCAAg tccatatttttggcttcgcttgacggtccaacctcacgtgtcctttgcagGCTAATACCAAGTTCAACTCCCGCTGGACCCACTGATGAGCAACTTCTAGCAGTTCAAggttcgtcaggccattgtgagtcccaagaactctagagacctttaatcttt Alignment from Spaln_aa2Genome GCTAATACCAAGTTCAACTCCCGCTGGACC-ACTGATGAGCAACTTCTAGCTGTTCAAG tccatatttttggcttcgcttgacggtccaacctcacgtgtcctttgcagGCTAATACCAAGTTCAACTCCCGCTGGACCcACTGATGAGCAACTTCTAGCAGTTCAAGgttcgtcaggccattgtgagtcccaagaactctagagacctttaatcttt Alignment from Spaln_nt2Genome GCTAATACCAAGTTCAACTCCCGCTGGAC-CACTGATGAGCAACTTCTAGCTGTTCAAG tccatatttttggcttcgcttgacggtccaacctcacgtgtcctttgcagGCTAATACCAAGTTCAACTCCCGCTGGACCCACTGATGAGCAACTTCTAGCAGTTCAAGgttcgtcaggccattgtgagtcccaagaactctagagacctttaatcttt Alignment from Pairagon GCTAATACCAAGTTCAACTCCCGCTGGA-CCACTGATGAGCAACTTCTAGCTGTTCAAG tccatatttttggcttcgcttgacggtccaacctcacgtgtcctttgcagGCTAATACCAAGTTCAACTCCCGCTGGACCCACTGATGAGCAACTTCTAGCAGTTCAAGgttcgtcaggccattgtgagtcccaagaactctagagacctttaatcttt Alignment from Exonerate_protein2genome GCTAATACCAAGTTCAACTCCCGCTGGACC-ACTGATGAGCAACTTCTAGCTGTTCAAG tccatatttttggcttcgcttgacggtccaacctcacgtgtcctttgcagGCTAATACCAAGTTCAACTCCCGCTGGACCCACTGATGAGCAACTTCTAGCAGTTCAAGgttcgtcaggccattgtgagtcccaagaactctagagacctttaatcttt Alignment from Exonerate_coding2genome GCTAATACCAAGTTCAACTCCCGCTGGACC-ACTGATGAGCAACTTCTAGCTGTTCAAG tccatatttttggcttcgcttgacggtccaacctcacgtgtcctttgcagGCTAATACCAAGTTCAACTCCCGCTGGACCCACTGATGAGCAACTTCTAGCAGTTCAAGgttcgtcaggccattgtgagtcccaagaactctagagacctttaatcttt Alignment from GeneWise GCTAATACCAAGTTCAACTCCCGCTGGACC-ACTGATGAGCAACTTCTAGCTGTTCAAG tccatatttttggcttcgcttgacggtccaacctcacgtgtcctttgcagGCTAATACCAAGTTCAACTCCCGCTGGACCCACTGATGAGCAACTTCTAGCAGTTCAAGgttcgtcaggccattgtgagtcccaagaactctagagacctttaatcttt #### Rcor2_ID2099_10 --> 2 - 0 Original Alignment ctATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAG-GATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagatcattctatatttacagtctgatgtttttctttttaaacgtctagccATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGCGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtaagtggcaggaataagtttcagggaggaggtgagtctctatggaacag Alignment from CESAR ctATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAG-GATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagatcattctatatttacagtctgatgtttttctttttaaacgtctagccATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGCGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtaagtggcaggaataagtttcagggaggaggtgagtctctatggaacag Alignment from Spaln_aa2Genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAG-GATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagatcattctatatttacagtctgatgtttttctttttaaacgtctagCCATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGcGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtaagtggcaggaataagtttcagggaggaggtgagtctctatggaacag Alignment from Spaln_nt2Genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAG-GATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagatcattctatatttacagtctgatgtttttctttttaaacgtctagCCATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGCGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtaagtggcaggaataagtttcagggaggaggtgagtctctatggaacag Alignment from Pairagon CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAG-GATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagatcattctatatttacagtctgatgtttttctttttaaacgtctagCCATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGCGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtaagtggcaggaataagtttcagggaggaggtgagtctctatggaacag Alignment from Exonerate_protein2genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAG-GATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagatcattctatatttacagtctgatgtttttctttttaaacgtctagCCATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGCGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtaagtggcaggaataagtttcagggaggaggtgagtctctatggaacag Alignment from Exonerate_coding2genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAG-GATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagatcattctatatttacagtctgatgtttttctttttaaacgtctagCCATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGCGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtaagtggcaggaataagtttcagggaggaggtgagtctctatggaacag Alignment from GeneWise CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAG-CAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acagatcattctatatttacagtctgatgtttttctttttaaacgtctagCCATTCGTAGATATGGCACAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCGCTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGCGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATGAGgtaagtggcaggaataagtttcagggaggaggtgagtctctatggaacag #### Rela_ID1126_3 --> 2 - 0 Original Alignment agCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGG-CGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG gattgggggctgcaagaagaacacctgaattcttgttgttactgttgtagagCCAGCCCAGGCTTCTGGGCCTTATGTGGAAATCATCGAACAGCCAAAGCAACGGGGCATGCGATTCCGCTATAAATCCGAGGGGCCGCTCAGCAGGCGGTATTCCTGGTGAGAGAAGCACAGATACCACAAAGACACACCCCACTATCAAGgtaatgaagggcccccaggggtgctgtgccgtggaatgcactgtgcagct Alignment from CESAR agCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGG-CGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG gattgggggctgcaagaagaacacctgaattcttgttgttactgttgtagagCCAGCCCAGGCTTCTGGGCCTTATGTGGAAATCATCGAACAGCCAAAGCAACGGGGCATGCGATTCCGCTATAAATCCGAGGGGCCGCTCAGCAGGCGGTATTCCTGGTGAGAGAAGCACAGATACCACAAAGACACACCCCACTATCAAGgtaatgaagggcccccaggggtgctgtgccgtggaatgcactgtgcagct Alignment from Spaln_aa2Genome AGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAG-GGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG gattgggggctgcaagaagaacacctgaattcttgttgttactgttgtagAGCCAGCCCAGGCTTCTGGGCCTTATGTGGAAATCATCGAACAGCCAAAGCAACGGGGCATGCGATTCCGCTATAAATCCGAGgGGCCGCTCAGCAGGCGGTATTCCTGGTGAGAGAAGCACAGATACCACAAAGACACACCCCACTATCAAGgtaatgaagggcccccaggggtgctgtgccgtggaatgcactgtgcagct Alignment from Spaln_nt2Genome AGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGA-GGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG gattgggggctgcaagaagaacacctgaattcttgttgttactgttgtagAGCCAGCCCAGGCTTCTGGGCCTTATGTGGAAATCATCGAACAGCCAAAGCAACGGGGCATGCGATTCCGCTATAAATCCGAGGGGCCGCTCAGCAGGCGGTATTCCTGGTGAGAGAAGCACAGATACCACAAAGACACACCCCACTATCAAGgtaatgaagggcccccaggggtgctgtgccgtggaatgcactgtgcagct Alignment from Pairagon AGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGG-CGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG gattgggggctgcaagaagaacacctgaattcttgttgttactgttgtagAGCCAGCCCAGGCTTCTGGGCCTTATGTGGAAATCATCGAACAGCCAAAGCAACGGGGCATGCGATTCCGCTATAAATCCGAGGGGCCGCTCAGCAGGCGGTATTCCTGGTGAGAGAAGCACAGATACCACAAAGACACACCCCACTATCAAGgtaatgaagggcccccaggggtgctgtgccgtggaatgcactgtgcagct Alignment from Exonerate_protein2genome AGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAG-GGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG gattgggggctgcaagaagaacacctgaattcttgttgttactgttgtagAGCCAGCCCAGGCTTCTGGGCCTTATGTGGAAATCATCGAACAGCCAAAGCAACGGGGCATGCGATTCCGCTATAAATCCGAGGGGCCGCTCAGCAGGCGGTATTCCTGGTGAGAGAAGCACAGATACCACAAAGACACACCCCACTATCAAGgtaatgaagggcccccaggggtgctgtgccgtggaatgcactgtgcagct Alignment from Exonerate_coding2genome GAGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAG-GGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG gattgggggctgcaagaagaacacctgaattcttgttgttactgttgtaGAGCCAGCCCAGGCTTCTGGGCCTTATGTGGAAATCATCGAACAGCCAAAGCAACGGGGCATGCGATTCCGCTATAAATCCGAGGGGCCGCTCAGCAGGCGGTATTCCTGGTGAGAGAAGCACAGATACCACAAAGACACACCCCACTATCAAGgtaatgaagggcccccaggggtgctgtgccgtggaatgcactgtgcagct Alignment from GeneWise GACGATCTGTTTCCCCTCATCTTTCCCTCAGAGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATCATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAA-TGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG ctgcaagaagaacacctga---------ATTCTTGTTGTTACTGTTGTAGAGCCAGCCCAGGCTTCTGGGCCTTATGTGGAAATCATCGAACAGCCAAAGCAACGGGGCATGCGATTCCGCTATAAATCCGAGGGGCCGCTCAGCAGGCGGTATTCCTGGTGAGAGAAGCACAGATACCACAAAGACACACCCCACTATCAAGgtaatgaagggcccccaggggtgctgtgccgtggaatgcactgtgcagct #### Rela_ID1127_4 --> 0 - 2 Original Alignment ATCAATGGCTACACAGGACCAGGAACAGTT-CGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATag gagccagattaggaaatgctggccactacatcccctttttttcccccaagATTAATGGTTACACAGGACCAGGAACAGTTCCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGCTGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATaggtcaggtacctatggactggaggtggtgtcaggggggtgtaagagtatac Alignment from CESAR ATCAATGGCTACACAGGACCAGGAACAGTT-CGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATag gagccagattaggaaatgctggccactacatcccctttttttcccccaagATTAATGGTTACACAGGACCAGGAACAGTTCCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGCTGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATaggtcaggtacctatggactggaggtggtgtcaggggggtgtaagagtatac Alignment from Spaln_aa2Genome ATCAATGGCTACACAGGACCAGGAACAGTT-CGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG gagccagattaggaaatgctggccactacatcccctttttttcccccaagATTAATGGTTACACAGGACCAGGAACAGTTcCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGCTGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAGgtcaggtacctatggactggaggtggtgtcaggggggtgtaagagtatac Alignment from Spaln_nt2Genome ATCAATGGCTACACAGGACCAGGAACAGTT-CGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG gagccagattaggaaatgctggccactacatcccctttttttcccccaagATTAATGGTTACACAGGACCAGGAACAGTTCCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGCTGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAGgtcaggtacctatggactggaggtggtgtcaggggggtgtaagagtatac Alignment from Pairagon ATCAATGGCTACACAGGACCAGGAACAGTT-CGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG gagccagattaggaaatgctggccactacatcccctttttttcccccaagATTAATGGTTACACAGGACCAGGAACAGTTCCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGCTGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAGgtcaggtacctatggactggaggtggtgtcaggggggtgtaagagtatac Alignment from Exonerate_protein2genome ATCAATGGCTACACAGGACCAGGAACAGTT-CGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG gagccagattaggaaatgctggccactacatcccctttttttcccccaagATTAATGGTTACACAGGACCAGGAACAGTTCCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGCTGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAGgtcaggtacctatggactggaggtggtgtcaggggggtgtaagagtatac Alignment from Exonerate_coding2genome ATCAATGGCTACACAGGACCAGGAACAGTT-CGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG gagccagattaggaaatgctggccactacatcccctttttttcccccaagATTAATGGTTACACAGGACCAGGAACAGTTCCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGCTGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAGgtcaggtacctatggactggaggtggtgtcaggggggtgtaagagtatac Alignment from GeneWise ATCAATGGCTACACAGGACCAGGAACA-GTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG gagccagattaggaaatgctggccactacatcccctttttttcccccaagATTAATGGTTACACAGGACCAGGAACAGTTCCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTAGGGAAGGACTGCTGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAGgtcaggtacctatggactggaggtggtgtcaggggggtgtaagagtatac #### Rin1_ID807_2 --> 1 - 0 Original Alignment gCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATC-ACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggatgggaagatgtgttcactcctcccaccctgtatgccctgcaggCCATCCACAGACCCGCTGTATGACACACCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAGCCAGCACGTACTGTGAGCCTCCATGAGCGGCTGCTGATCCACCCGGCCTGTGTGGTTACAGCTCCGGGCCAATGCGGCAGCCGCACTGCACGTGCTAAGGACAGAGCCTCCAGGGgtgagtctttctttccagtttgtcgaatcctagcctgacaaggatggagg Alignment from CESAR gCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATC-ACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggatgggaagatgtgttcactcctcccaccctgtatgccctgcaggCCATCCACAGACCCGCTGTATGACACACCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAGCCAGCACGTACTGTGAGCCTCCATGAGCGGCTGCTGATCCACCCGGCCTGTGTGGTTACAGCTCCGGGCCAATGCGGCAGCCGCACTGCACGTGCTAAGGACAGAGCCTCCAGGGgtgagtctttctttccagtttgtcgaatcctagcctgacaaggatggagg Alignment from Spaln_aa2Genome GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATC-ACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggatgggaagatgtgttcactcctcccaccctgtatgccctgcagGCCATCCACAGACCCGCTGTATGACACACCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAGCCAGCACGTACTGTGAGCCTCCATGAGCGGCTGCTGATCcACCCGGCCTGTGTGGTTACAGCTCCGGGCCAATGCGGCAGCCGCACTGCACGTGCTAAGGACAGAGCCTCCAGGGgtgagtctttctttccagtttgtcgaatcctagcctgacaaggatggagg Alignment from Spaln_nt2Genome GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGAT-CACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggatgggaagatgtgttcactcctcccaccctgtatgccctgcagGCCATCCACAGACCCGCTGTATGACACACCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAGCCAGCACGTACTGTGAGCCTCCATGAGCGGCTGCTGATCCACCCGGCCTGTGTGGTTACAGCTCCGGGCCAATGCGGCAGCCGCACTGCACGTGCTAAGGACAGAGCCTCCAGGGgtgagtctttctttccagtttgtcgaatcctagcctgacaaggatggagg Alignment from Pairagon GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGAT-CACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggatgggaagatgtgttcactcctcccaccctgtatgccctgcagGCCATCCACAGACCCGCTGTATGACACACCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAGCCAGCACGTACTGTGAGCCTCCATGAGCGGCTGCTGATCCACCCGGCCTGTGTGGTTACAGCTCCGGGCCAATGCGGCAGCCGCACTGCACGTGCTAAGGACAGAGCCTCCAGGGgtgagtctttctttccagtttgtcgaatcctagcctgacaaggatggagg Alignment from Exonerate_protein2genome GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATC-ACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggatgggaagatgtgttcactcctcccaccctgtatgccctgcagGCCATCCACAGACCCGCTGTATGACACACCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAGCCAGCACGTACTGTGAGCCTCCATGAGCGGCTGCTGATCCACCCGGCCTGTGTGGTTACAGCTCCGGGCCAATGCGGCAGCCGCACTGCACGTGCTAAGGACAGAGCCTCCAGGGgtgagtctttctttccagtttgtcgaatcctagcctgacaaggatggagg Alignment from Exonerate_coding2genome GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATC-ACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggatgggaagatgtgttcactcctcccaccctgtatgccctgcagGCCATCCACAGACCCGCTGTATGACACACCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAGCCAGCACGTACTGTGAGCCTCCATGAGCGGCTGCTGATCCACCCGGCCTGTGTGGTTACAGCTCCGGGCCAATGCGGCAGCCGCACTGCACGTGCTAAGGACAGAGCCTCCAGGGgtgagtctttctttccagtttgtcgaatcctagcctgacaaggatggagg Alignment from GeneWise GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTG-ATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggatgggaagatgtgttcactcctcccaccctgtatgccctgcagGCCATCCACAGACCCGCTGTATGACACACCTGATACAAGAGGTGTGCAGGCTGGTGGGTCACAACAGCCAGCACGTACTGTGAGCCTCCATGAGCGGCTGCTGATCCACCCGGCCTGTGTGGTTACAGCTCCGGGCCAATGCGGCAGCCGCACTGCACGTGCTAAGGACAGAGCCTCCAGGGgtgagtctttctttccagtttgtcgaatcctagcctgacaaggatggagg #### Rin1_ID810_5 --> 1 - 1 Original Alignment aGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAG-GCCATCTCCCATCTGGGCATGg tccttgctcatccttagggaagctcttcagacacatgtttctattcctagaGCCATTCATCAGGCAGCCACCCACAAAGAGCTAGAGCGCTATCTCCCATCTGGGCATGggtgagtgtacccggcagcctgttacataagacacacggaggttaaatggt Alignment from CESAR aGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAG-GCCATCTCCCATCTGGGCATGg tccttgctcatccttagggaagctcttcagacacatgtttctattcctagaGCCATTCATCAGGCAGCCACCCACAAAGAGCTAGAGCGCTATCTCCCATCTGGGCATGggtgagtgtacccggcagcctgttacataagacacacggaggttaaatggt Alignment from Spaln_aa2Genome AGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAG-GCCATCTCCCATCTGGGCATGG tccttgctcatccttagggaagctcttcagacacatgtttctattcctagAGCCATTCATCAGGCAGCCACCCACAAAGAGCTAGAGcGCTATCTCCCATCTGGGCATGGgtgagtgtacccggcagcctgttacataagacacacggaggttaaatggt Alignment from Spaln_nt2Genome AGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAG-GCCATCTCCCATCTGGGCATGG tccttgctcatccttagggaagctcttcagacacatgtttctattcctagAGCCATTCATCAGGCAGCCACCCACAAAGAGCTAGAGCGCTATCTCCCATCTGGGCATGGgtgagtgtacccggcagcctgttacataagacacacggaggttaaatggt Alignment from Pairagon AGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAG-GCCATCTCCCATCTGGGCATGG tccttgctcatccttagggaagctcttcagacacatgtttctattcctagAGCCATTCATCAGGCAGCCACCCACAAAGAGCTAGAGCGCTATCTCCCATCTGGGCATGGgtgagtgtacccggcagcctgttacataagacacacggaggttaaatggt Alignment from Exonerate_protein2genome AGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAG-GCCATCTCCCATCTGGGCATGG tccttgctcatccttagggaagctcttcagacacatgtttctattcctagAGCCATTCATCAGGCAGCCACCCACAAAGAGCTAGAGCGCTATCTCCCATCTGGGCATGGgtgagtgtacccggcagcctgttacataagacacacggaggttaaatggt Alignment from Exonerate_coding2genome AGCCATTCATCAGGCAGCCACCCACAAAGAGCTGGAG-GCCATCTCCCATCTGGGCATGG tccttgctcatccttagggaagctcttcagacacatgtttctattcctagAGCCATTCATCAGGCAGCCACCCACAAAGAGCTAGAGCGCTATCTCCCATCTGGGCATGGgtgagtgtacccggcagcctgttacataagacacacggaggttaaatggt Alignment from GeneWise tccttgctcatccttagggaagctcttcagacacatgtttctattcctagagccattcatcaggcagccacccacaaagagctagagcgctatctcccatctgggcatgggtgagtgtacccggcagcctgttacataagacacacggaggttaaatggt #### Rin1_ID812_7 --> 2 - 1 Original Alignment aaTTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCC-CACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAg gtatggattcgtagaaactcccctaactgtatgtttgtttctttttccagaaTTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTTCGGCACCGGCTTTCTGCTGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTTCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGCCCCCACCTGACTCTTTCTTCCCCGGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAggtaagacccccaccaccttcccctgtaccactgttctggagtagaagcta Alignment from CESAR aaTTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCC-CACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAg gtatggattcgtagaaactcccctaactgtatgtttgtttctttttccagaaTTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTTCGGCACCGGCTTTCTGCTGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTTCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGCCCCCACCTGACTCTTTCTTCCCCGGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAggtaagacccccaccaccttcccctgtaccactgttctggagtagaagcta Alignment from Spaln_aa2Genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCC-CACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gtatggattcgtagaaactcccctaactgtatgtttgtttctttttccagAATTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTTCGGCACCGGCTTTCTGCTGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTTCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGCCCcCACCTGACTCTTTCTTCCCCGGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAGgtaagacccccaccaccttcccctgtaccactgttctggagtagaagcta Alignment from Spaln_nt2Genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTC-GGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gtatggattcgtagaaactcccctaactgtatgtttgtttctttttccagAATTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTTCGGCACCGGCTTTCTGCTGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTTCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGCCCCCACCTGACTCTTTCTTCCCCGGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAGgtaagacccccaccaccttcccctgtaccactgttctggagtagaagcta Alignment from Pairagon AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGG-TCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gtatggattcgtagaaactcccctaactgtatgtttgtttctttttccagAATTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTTCGGCACCGGCTTTCTGCTGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTTCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGCCCCCACCTGACTCTTTCTTCCCCGGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAGgtaagacccccaccaccttcccctgtaccactgttctggagtagaagcta Alignment from Exonerate_protein2genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTC-GGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gtatggattcgtagaaactcccctaactgtatgtttgtttctttttccagAATTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTTCGGCACCGGCTTTCTGCTGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTTCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGCCCCCACCTGACTCTTTCTTCCCCGGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAGgtaagacccccaccaccttcccctgtaccactgttctggagtagaagcta Alignment from Exonerate_coding2genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTC-GGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gtatggattcgtagaaactcccctaactgtatgtttgtttctttttccagAATTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTTCGGCACCGGCTTTCTGCTGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTTCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGCCCCCACCTGACTCTTTCTTCCCCGGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAGgtaagacccccaccaccttcccctgtaccactgttctggagtagaagcta Alignment from GeneWise AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGG-TCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gtatggattcgtagaaactcccctaactgtatgtttgtttctttttccagAATTGGTCCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTTCGGCACCGGCTTTCTGCTGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTTCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGCCCCCACCTGACTCTTTCTTCCCCGGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAGgtaagacccccaccaccttcccctgtaccactgttctggagtagaagcta #### Rom1_ID2497_2 --> 1 - 0 Original Alignment cCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCT-TGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tccctgctctcacactccacctcatgactcatgtatttgtgtcatttcagtCGGATCCCAAGCAATGTAGAAGGCTTATATCTGATTGATGGAGTCCCCTTCTCCTGCTGTAATCCCCACTCACCT------CTGCCTGCAAAGCCAACTCTCAGACCCCTATGCCCATCCACTTCTT---CCTCAGCAGCCCAACCTAAACCTCTGGGCCCAAGGATGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCCGGGACATTGGGAAGTATTCTGGCGATAACTTTATTGCTGCAGgtgagtcgctaaggtccctaactcctaccttcacttttgtgaccttaaaa Alignment from CESAR cCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tccctgctctcacactccacctcatgactcatgtatttgtgtcatttcagtCGGATCCCAAGCAATGTAGAAGGCTTATATCTGATTGATGGAGTCCCCTTCTCCTGCTGTAATCCCCACTCACCT-----CTGCCTGCAAAGCCAACTCTCAGACCCCTATGCCCATCCACTTCTT---CCTCAGCAGCCCAACCTAAACCTCTGGGCCCAAGGATGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCCGGGACATTGGGAAGTATTCTGGCGATAACTTTATTGCTGCAGgtgagtcgctaaggtccctaactcctaccttcacttttgtgaccttaaaa Alignment from Spaln_aa2Genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tccctgctctcacactccacctcatgactcatgtatttgtgtcatttcagTCGGATCCCAAGCAATGTAGAAGGCTTATATCTGATTGATGGAGTCCCCTTCTCCTGCTGTAATCCCCACTCACCTC-----TGCCTGCAAAGCCAACTCTCAGACCCCTATGCCCATCCACTTCTT---CCTCAGCAGCCCAACCTAAACCTCTGGGCCCAAGGATGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCCGGGACATTGGGAAGTATTCTGGCGATAACTTTATTGCTGCAGgtgagtcgctaaggtccctaactcctaccttcacttttgtgaccttaaaa Alignment from Spaln_nt2Genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tccctgctctcacactccacctcatgactcatgtatttgtgtcatttcagTCGGATCCCAAGCAATGTAGAAGGCTTATATCTGATTGATGGAGTCCCCTTCTCCTGCTGTAATCCCCACTCACCTC-----TGCCTGCAAAGCCAACTCTCAGACCCCTATGCCCATCCACTTCT---TCCTCAGCAGCCCAACCTAAACCTCTGGGCCCAAGGATGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCCGGGACATTGGGAAGTATTCTGGCGATAACTTTATTGCTGCAGgtgagtcgctaaggtccctaactcctaccttcacttttgtgaccttaaaa Alignment from Pairagon CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tccctgctctcacactccacctcatgactcatgtatttgtgtcatttcagTCGGATCCCAAGCAATGTAGAAGGCTTATATCTGATTGATGGAGTCCCCTTCTCCTGCTGTAATCCCCACTCACCTC-----TGCCTGCAAAGCCAACTCTCAGACCCCTATGCCCATCCACTTCT---TCCTCAGCAGCCCAACCTAAACCTCTGGGCCCAAGGATGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCCGGGACATTGGGAAGTATTCTGGCGATAACTTTATTGCTGCAGgtgagtcgctaaggtccctaactcctaccttcacttttgtgaccttaaaa Alignment from Exonerate_protein2genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCT-TGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tccctgctctcacactccacctcatgactcatgtatttgtgtcatttcagTCGGATCCCAAGCAATGTAGAAGGCTTATATCTGATTGATGGAGTCCCCTTCTCCTGCTGTAATCCCCACTCA------CCTCTGCCTGCAAAGCCAACTCTCAGACCCCTATGCCCATCCACTTCTT---CCTCAGCAGCCCAACCTAAACCTCTGGGCCCAAGGATGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCCGGGACATTGGGAAGTATTCTGGCGATAACTTTATTGCTGCAGgtgagtcgctaaggtccctaactcctaccttcacttttgtgaccttaaaa Alignment from Exonerate_coding2genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCT-TGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tccctgctctcacactccacctcatgactcatgtatttgtgtcatttcagTCGGATCCCAAGCAATGTAGAAGGCTTATATCTGATTGATGGAGTCCCCTTCTCCTGCTGTAATCCCCACTCA------CCTCTGCCTGCAAAGCCAACTCTCAGACCCCTATGCCCATCCACTTCTT---CCTCAGCAGCCCAACCTAAACCTCTGGGCCCAAGGATGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCCGGGACATTGGGAAGTATTCTGGCGATAACTTTATTGCTGCAGgtgagtcgctaaggtccctaactcctaccttcacttttgtgaccttaaaa Alignment from GeneWise CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tccctgctctcacactccacctcatgactcatgtatttgtgtcatttcagTCGGATCCCAAGCAATGTAGAAGGCTTATATCTGATTGATGGAGTCCCCTTCTCCTGCTGTAATCCCCACTCACCTC-----TGCCTGCAAAGCCAACTCTCAGACCCCTATGCCCATCCACTTCTT---CCTCAGCAGCCCAACCTAAACCTCTGGGCCCAAGGATGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCCGGGACATTGGGAAGTATTCTGGCGATAACTTTATTGCTGCAGgtgagtcgctaaggtccctaactcctaccttcacttttgtgaccttaaaa #### Rpp30_ID7089_9 --> 0 - 2 Original Alignment CCTTTGGAAATAAGA-GGACCATATGACGTGGCAAACtt taaacaacccttacaatggtttattacacatcttcatccttgtctttaagCCCTTGGAAATAAGACGGACCATACGATGTGGCAAACttgtaatgtctcagtatactgattggggtagctctctccttccaccttgcag Alignment from CESAR CCTTTGGAAATAAGA-GGACCATATGACGTGGCAAACtt taaacaacccttacaatggtttattacacatcttcatccttgtctttaagCCCTTGGAAATAAGACGGACCATACGATGTGGCAAACttgtaatgtctcagtatactgattggggtagctctctccttccaccttgcag Alignment from Spaln_aa2Genome CCTTTGGAAATAAGA-GGACCATATGACGTGGCAAACTT taaacaacccttacaatggtttattacacatcttcatccttgtctttaagCCCTTGGAAATAAGAcGGACCATACGATGTGGCAAACTTgtaatgtctcagtatactgattggggtagctctctccttccaccttgcag Alignment from Spaln_nt2Genome CCTTTGGAAATAAGA-GGACCATATGACGTGGCAAACTT taaacaacccttacaatggtttattacacatcttcatccttgtctttaagCCCTTGGAAATAAGACGGACCATACGATGTGGCAAACTTgtaatgtctcagtatactgattggggtagctctctccttccaccttgcag Alignment from Pairagon CCTTTGGAAATAAGA-GGACCATATGACGTGGCAAACTT taaacaacccttacaatggtttattacacatcttcatccttgtctttaagCCCTTGGAAATAAGACGGACCATACGATGTGGCAAACTTgtaatgtctcagtatactgattggggtagctctctccttccaccttgcag Alignment from Exonerate_protein2genome CCTTTGGAAATAAGA-GGACCATATGACGTGGCAAACTT taaacaacccttacaatggtttattacacatcttcatccttgtctttaagCCCTTGGAAATAAGACGGACCATACGATGTGGCAAACTTgtaatgtctcagtatactgattggggtagctctctccttccaccttgcag Alignment from Exonerate_coding2genome taaacaacccttacaatggtttattacacatcttcatccttgtctttaagcccttggaaataagacggaccatacgatgtggcaaacttgtaatgtctcagtatactgattggggtagctctctccttccaccttgcag Alignment from GeneWise taaacaacccttacaatggtttattacacatcttcatccttgtctttaagcccttggaaataagacggaccatacgatgtggcaaacttgtaatgtctcagtatactgattggggtagctctctccttccaccttgcag #### Rps6kb2_ID370_12 --> 0 - 0 Original Alignment AGGCACCCCTTTTTCCGGCACATC-AATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gatagacaggcagagtgattgacatagtgtatgaaaattcatatttttagAGGCACCCCTTCTTTCGACACATCCAATTGGGATGACCTCTTGGCCTGCCGTGTGGACCCTCTCTTCAGGCCAAGTCTGgtaagcacatggaggtcatcttgatcacatggtatggagagaacctctcc Alignment from CESAR AGGCACCCCTTTTTCCGGCACATC-AATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gatagacaggcagagtgattgacatagtgtatgaaaattcatatttttagAGGCACCCCTTCTTTCGACACATCCAATTGGGATGACCTCTTGGCCTGCCGTGTGGACCCTCTCTTCAGGCCAAGTCTGgtaagcacatggaggtcatcttgatcacatggtatggagagaacctctcc Alignment from Spaln_aa2Genome AGGCACCCCTTTTTCCGGCACATC-AATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gatagacaggcagagtgattgacatagtgtatgaaaattcatatttttagAGGCACCCCTTCTTTCGACACATCcAATTGGGATGACCTCTTGGCCTGCCGTGTGGACCCTCTCTTCAGGCCAAGTCTGgtaagcacatggaggtcatcttgatcacatggtatggagagaacctctcc Alignment from Spaln_nt2Genome AGGCACCCCTTTTTCCGGCACATC-AATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gatagacaggcagagtgattgacatagtgtatgaaaattcatatttttagAGGCACCCCTTCTTTCGACACATCCAATTGGGATGACCTCTTGGCCTGCCGTGTGGACCCTCTCTTCAGGCCAAGTCTGgtaagcacatggaggtcatcttgatcacatggtatggagagaacctctcc Alignment from Pairagon AGGCACCCCTTTTTCCGGCACAT-CAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gatagacaggcagagtgattgacatagtgtatgaaaattcatatttttagAGGCACCCCTTCTTTCGACACATCCAATTGGGATGACCTCTTGGCCTGCCGTGTGGACCCTCTCTTCAGGCCAAGTCTGgtaagcacatggaggtcatcttgatcacatggtatggagagaacctctcc Alignment from Exonerate_protein2genome AGGCACCCCTTTTTCCGGCACATC-AATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gatagacaggcagagtgattgacatagtgtatgaaaattcatatttttagAGGCACCCCTTCTTTCGACACATCCAATTGGGATGACCTCTTGGCCTGCCGTGTGGACCCTCTCTTCAGGCCAAGTCTGgtaagcacatggaggtcatcttgatcacatggtatggagagaacctctcc Alignment from Exonerate_coding2genome AGGCACCCCTTTTTCCGGCACATC-AATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gatagacaggcagagtgattgacatagtgtatgaaaattcatatttttagAGGCACCCCTTCTTTCGACACATCCAATTGGGATGACCTCTTGGCCTGCCGTGTGGACCCTCTCTTCAGGCCAAGTCTGgtaagcacatggaggtcatcttgatcacatggtatggagagaacctctcc Alignment from GeneWise AGGCACCCCTTTTTCCGGCAC-ATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gatagacaggcagagtgattgacatagtgtatgaaaattcatatttttagAGGCACCCCTTCTTTCGACACATCCAATTGGGATGACCTCTTGGCCTGCCGTGTGGACCCTCTCTTCAGGCCAAGTCTGgtaagcacatggaggtcatcttgatcacatggtatggagagaacctctcc #### Rps6kb2_ID372_10 --> 0 - 0 Original Alignment CCGCCCTTCACTGCAGAGAACCGGAAGAAAACTATGGATAAAATCATTAAAGGGAAGCTGGTGCTGCCCCCCTACCTCACCCCG-GATGCCCGGGACCTTGCCAAAAAG gagatgttgcggggagctcttccaggtctgggcgttatttttctctacagCCGCCCTTCACTGCTGAGAACCGGAAGAAAACTACAGATAACATCATTAAAGGGAAGCTGGTACTTCCCCCATACCTCATGCCACGATGCCCGGGACCTTGCCAAAAAGgtaagtctccctctcatccagaggcttattgctgcctcctcaagaatgag Alignment from CESAR CCGCCCTTCACTGCAGAGAACCGGAAGAAAACTATGGATAAAATCATTAAAGGGAAGCTGGTGCTGCCCCCCTACCTCACCCCG-GATGCCCGGGACCTTGCCAAAAAG gagatgttgcggggagctcttccaggtctgggcgttatttttctctacagCCGCCCTTCACTGCTGAGAACCGGAAGAAAACTACAGATAACATCATTAAAGGGAAGCTGGTACTTCCCCCATACCTCATGCCACGATGCCCGGGACCTTGCCAAAAAGgtaagtctccctctcatccagaggcttattgctgcctcctcaagaatgag Alignment from Spaln_aa2Genome CCGCCCTTCACTGCAGAGAACCGGAAGAAAACTATGGATAAAATCATTAAAGGGAAGCTGGTGCTGCCCCCCTACCTCACCCCG-GATGCCCGGGACCTTGCCAAAAAG gagatgttgcggggagctcttccaggtctgggcgttatttttctctacagCCGCCCTTCACTGCTGAGAACCGGAAGAAAACTACAGATAACATCATTAAAGGGAAGCTGGTACTTCCCCCATACCTCATGCCAcGATGCCCGGGACCTTGCCAAAAAGgtaagtctccctctcatccagaggcttattgctgcctcctcaagaatgag Alignment from Spaln_nt2Genome CCGCCCTTCACTGCAGAGAACCGGAAGAAAACTATGGATAAAATCATTAAAGGGAAGCTGGTGCTGCCCCCCTACCTCACCCCG-GATGCCCGGGACCTTGCCAAAAAG gagatgttgcggggagctcttccaggtctgggcgttatttttctctacagCCGCCCTTCACTGCTGAGAACCGGAAGAAAACTACAGATAACATCATTAAAGGGAAGCTGGTACTTCCCCCATACCTCATGCCACGATGCCCGGGACCTTGCCAAAAAGgtaagtctccctctcatccagaggcttattgctgcctcctcaagaatgag Alignment from Pairagon CCGCCCTTCACTGCAGAGAACCGGAAGAAAACTATGGATAAAATCATTAAAGGGAAGCTGGTGCTGCCCCCCTACCTCACCCCG-GATGCCCGGGACCTTGCCAAAAAG gagatgttgcggggagctcttccaggtctgggcgttatttttctctacagCCGCCCTTCACTGCTGAGAACCGGAAGAAAACTACAGATAACATCATTAAAGGGAAGCTGGTACTTCCCCCATACCTCATGCCACGATGCCCGGGACCTTGCCAAAAAGgtaagtctccctctcatccagaggcttattgctgcctcctcaagaatgag Alignment from Exonerate_protein2genome CCGCCCTTCACTGCAGAGAACCGGAAGAAAACTATGGATAAAATCATTAAAGGGAAGCTGGTGCTGCCCCCCTACCTCACCCCG-GATGCCCGGGACCTTGCCAAAAAG gagatgttgcggggagctcttccaggtctgggcgttatttttctctacagCCGCCCTTCACTGCTGAGAACCGGAAGAAAACTACAGATAACATCATTAAAGGGAAGCTGGTACTTCCCCCATACCTCATGCCACGATGCCCGGGACCTTGCCAAAAAGgtaagtctccctctcatccagaggcttattgctgcctcctcaagaatgag Alignment from Exonerate_coding2genome CCGCCCTTCACTGCAGAGAACCGGAAGAAAACTATGGATAAAATCATTAAAGGGAAGCTGGTGCTGCCCCCCTACCTCACCCCG-GATGCCCGGGACCTTGCCAAAAAG gagatgttgcggggagctcttccaggtctgggcgttatttttctctacagCCGCCCTTCACTGCTGAGAACCGGAAGAAAACTACAGATAACATCATTAAAGGGAAGCTGGTACTTCCCCCATACCTCATGCCACGATGCCCGGGACCTTGCCAAAAAGgtaagtctccctctcatccagaggcttattgctgcctcctcaagaatgag Alignment from GeneWise CCGCCCTTCACTGCAGAGAACCGGAAGAAAACTATGGATAAAATCATTAAAGGGAAGCTGGTGCTGCCCCCCTACCTCACCCCG-GATGCCCGGGACCTTGCCAAAAAG gagatgttgcggggagctcttccaggtctgggcgttatttttctctacagCCGCCCTTCACTGCTGAGAACCGGAAGAAAACTACAGATAACATCATTAAAGGGAAGCTGGTACTTCCCCCATACCTCATGCCACGATGCCCGGGACCTTGCCAAAAAGgtaagtctccctctcatccagaggcttattgctgcctcctcaagaatgag #### Rps6kb2_ID375_7 --> 1 - 1 Original Alignment cTTCTACCTGGCAGAGATCACACTAGCC-CTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGg ggtactgggccttgcctacaccccaacccctgaaccttgtggacctacagcTTCTACCTGGCGGAGATCACACTGGCGCCTGGGCCATCTCCATTTCCATGGCATCATCTACCGGGACCGCAAGCCTGAAAACATCATGCTCACCAGCCAGggtaagtataatgtgtgcatgtatgggtgttgagcccctggccttgccggt Alignment from CESAR cTTCTACCTGGCAGAGATCACACTAGCC-CTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGg ggtactgggccttgcctacaccccaacccctgaaccttgtggacctacagcTTCTACCTGGCGGAGATCACACTGGCGCCTGGGCCATCTCCATTTCCATGGCATCATCTACCGGGACCGCAAGCCTGAAAACATCATGCTCACCAGCCAGggtaagtataatgtgtgcatgtatgggtgttgagcccctggccttgccggt Alignment from Spaln_aa2Genome CTTCTACCTGGCAGAGATCACACTAGCC-CTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtactgggccttgcctacaccccaacccctgaaccttgtggacctacagCTTCTACCTGGCGGAGATCACACTGGCGcCTGGGCCATCTCCATTTCCATGGCATCATCTACCGGGACCGCAAGCCTGAAAACATCATGCTCACCAGCCAGGgtaagtataatgtgtgcatgtatgggtgttgagcccctggccttgccggt Alignment from Spaln_nt2Genome CTTCTACCTGGCAGAGATCACACTAGC-CCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtactgggccttgcctacaccccaacccctgaaccttgtggacctacagCTTCTACCTGGCGGAGATCACACTGGCGCCTGGGCCATCTCCATTTCCATGGCATCATCTACCGGGACCGCAAGCCTGAAAACATCATGCTCACCAGCCAGGgtaagtataatgtgtgcatgtatgggtgttgagcccctggccttgccggt Alignment from Pairagon CTTCTACCTGGCAGAGATCACACTAGC-CCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtactgggccttgcctacaccccaacccctgaaccttgtggacctacagCTTCTACCTGGCGGAGATCACACTGGCGCCTGGGCCATCTCCATTTCCATGGCATCATCTACCGGGACCGCAAGCCTGAAAACATCATGCTCACCAGCCAGGgtaagtataatgtgtgcatgtatgggtgttgagcccctggccttgccggt Alignment from Exonerate_protein2genome CTTCTACCTGGCAGAGATCACACTAGCC-CTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtactgggccttgcctacaccccaacccctgaaccttgtggacctacagCTTCTACCTGGCGGAGATCACACTGGCGCCTGGGCCATCTCCATTTCCATGGCATCATCTACCGGGACCGCAAGCCTGAAAACATCATGCTCACCAGCCAGGgtaagtataatgtgtgcatgtatgggtgttgagcccctggccttgccggt Alignment from Exonerate_coding2genome CTTCTACCTGGCAGAGATCACACTAGCC-CTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtactgggccttgcctacaccccaacccctgaaccttgtggacctacagCTTCTACCTGGCGGAGATCACACTGGCGCCTGGGCCATCTCCATTTCCATGGCATCATCTACCGGGACCGCAAGCCTGAAAACATCATGCTCACCAGCCAGGgtaagtataatgtgtgcatgtatgggtgttgagcccctggccttgccggt Alignment from GeneWise CTTCTACCTGGCAGAGATCACACTA-GCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG ggtactgggccttgcctacaccccaacccctgaaccttgtggacctacagCTTCTACCTGGCGGAGATCACACTGGCGCCTGGGCCATCTCCATTTCCATGGCATCATCTACCGGGACCGCAAGCCTGAAAACATCATGCTCACCAGCCAGGgtaagtataatgtgtgcatgtatgggtgttgagcccctggccttgccggt #### Rrp12_ID8295_28 --> 1 - 1 Original Alignment cATTGAGGAGATTTTGGCTGACTCT-GAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTg tcccctctgtcccaggagtgtactgaagttttgttttgttttgtttttagcATCGAGGAAATTTCGGCTGATTCACGAGGATGAGTATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACAACAGAGGAGCCGGGCATGG---AAGGAAGGTGGCGGTGATGGGCCTCTCAACTTC------CCCAAGGTGGCACATCGAGTCCGTggtgactaaggacagctgacctaggaaaagttgccctcccctgttgctgga Alignment from CESAR cATTGAGGAGATTTTGGCTGACTCT-GAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTg tcccctctgtcccaggagtgtactgaagttttgttttgttttgtttttagcATCGAGGAAATTTCGGCTGATTCACGAGGATGAGTATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACAACAGAGGAGCCGGGCATGG---AAGGAAGGTGGCGGTGATGGGCCTCTCAACTTC------CCCAAGGTGGCACATCGAGTCCGTggtgactaaggacagctgacctaggaaaagttgccctcccctgttgctgga Alignment from Spaln_aa2Genome CATTGAGGAGATTTTGGCTGACTCT-GAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG tcccctctgtcccaggagtgtactgaagttttgttttgttttgtttttagCATCGAGGAAATTTCGGCTGATTCAcGAGGATGAGTATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACAACAGAGGAGCCGGGCATGG---AAGGAAGGTGGCGGTGATGGGCCTCTCAACTTC------CCCAAGGTGGCACATCGAGTCCGTGgtgactaaggacagctgacctaggaaaagttgccctcccctgttgctgga Alignment from Spaln_nt2Genome CATTGAGGAGATTTTGGCTGACTCT-GAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG tcccctctgtcccaggagtgtactgaagttttgttttgttttgtttttagCATCGAGGAAATTTCGGCTGATTCACGAGGATGAGTATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACAACAGAGGAGCCGGGCATGG---AAGGAAGGTGGCGGTGATGGGCCTCTCAACTTC------CCCAAGGTGGCACATCGAGTCCGTGgtgactaaggacagctgacctaggaaaagttgccctcccctgttgctgga Alignment from Pairagon CATTGAGGAGATTTTGGCTGACTC-TGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG tcccctctgtcccaggagtgtactgaagttttgttttgttttgtttttagCATCGAGGAAATTTCGGCTGATTCACGAGGATGAGTATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACAACAGAGGAGCCGGGCATG---GAAGGAAGGTGGCGGTGATGGGCCTCTCAACTTC------CCCAAGGTGGCACATCGAGTCCGTGgtgactaaggacagctgacctaggaaaagttgccctcccctgttgctgga Alignment from Exonerate_protein2genome CATTGAGGAGATTTTGGCTGACTCT-GAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG tcccctctgtcccaggagtgtactgaagttttgttttgttttgtttttagCATCGAGGAAATTTCGGCTGATTCACGAGGATGAGTATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACAACAGAGGAGCCGGGCATGG---AAGGAAGGTGGCGGTGATGGGCCTCTCAACTTC------CCCAAGGTGGCACATCGAGTCCGTGgtgactaaggacagctgacctaggaaaagttgccctcccctgttgctgga Alignment from Exonerate_coding2genome CATTGAGGAGATTTTGGCTGACTCT-GAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG tcccctctgtcccaggagtgtactgaagttttgttttgttttgtttttagCATCGAGGAAATTTCGGCTGATTCACGAGGATGAGTATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACAACAGAGGAGCCGGGCATGG---AAGGAAGGTGGCGGTGATGGGCCTCTCAACTTC------CCCAAGGTGGCACATCGAGTCCGTGgtgactaaggacagctgacctaggaaaagttgccctcccctgttgctgga Alignment from GeneWise CATTGAGGAGATTTTGGCTGAC-TCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG tcccctctgtcccaggagtgtactgaagttttgttttgttttgtttttagCATCGAGGAAATTTCGGCTGATTCACGAGGATGAGTATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACAACAGAGGAGCCGGGCATGG---AAGGAAGGTGGCGGTGATGGGCCTCTCAACTTC------CCCAAGGTGGCACATCGAGTCCGTGgtgactaaggacagctgacctaggaaaagttgccctcccctgttgctgga #### Rrp12_ID8296_27 --> 1 - 2 Original Alignment aTTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAACATCAGG-AAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACag gaggaggggttcttggcaacctcaagactatttgtattctttgactgcaggTTTGAGTTGGTGAAGGGCCTGCTACCCGCAGAGTACCACAAAGTCCTAATTAACATCAGGCAAAGCTGAGACCCGAGCAAAGAAGCATCGGGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGTCGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACaggtactgcatgactcaatcccaagctcttagtccccccccacccaaaatct Alignment from CESAR aTTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAACATCAGG-AAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACag gaggaggggttcttggcaacctcaagactatttgtattctttgactgcaggTTTGAGTTGGTGAAGGGCCTGCTACCCGCAGAGTACCACAAAGTCCTAATTAACATCAGGCAAAGCTGAGACCCGAGCAAAGAAGCATCGGGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGTCGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACaggtactgcatgactcaatcccaagctcttagtccccccccacccaaaatct Alignment from Spaln_aa2Genome ATTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAACATCAGG-AAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAG gaggaggggttcttggcaacctcaagactatttgtattctttgactgcagGTTTGAGTTGGTGAAGGGCCTGCTACCCGCAGAGTACCACAAAGTCCTAATTAACATCAGGcAAAGCTGAGACCCGAGCAAAGAAGCATCGGGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGTCGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAGgtactgcatgactcaatcccaagctcttagtccccccccacccaaaatct Alignment from Spaln_nt2Genome ATTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAACATCAGG-AAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAG gaggaggggttcttggcaacctcaagactatttgtattctttgactgcagGTTTGAGTTGGTGAAGGGCCTGCTACCCGCAGAGTACCACAAAGTCCTAATTAACATCAGGCAAAGCTGAGACCCGAGCAAAGAAGCATCGGGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGTCGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAGgtactgcatgactcaatcccaagctcttagtccccccccacccaaaatct Alignment from Pairagon ATTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAACATCAGG-AAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAG gaggaggggttcttggcaacctcaagactatttgtattctttgactgcagGTTTGAGTTGGTGAAGGGCCTGCTACCCGCAGAGTACCACAAAGTCCTAATTAACATCAGGCAAAGCTGAGACCCGAGCAAAGAAGCATCGGGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGTCGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAGgtactgcatgactcaatcccaagctcttagtccccccccacccaaaatct Alignment from Exonerate_protein2genome ATTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAACATCAGG-AAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAG gaggaggggttcttggcaacctcaagactatttgtattctttgactgcagGTTTGAGTTGGTGAAGGGCCTGCTACCCGCAGAGTACCACAAAGTCCTAATTAACATCAGGCAAAGCTGAGACCCGAGCAAAGAAGCATCGGGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGTCGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAGgtactgcatgactcaatcccaagctcttagtccccccccacccaaaatct Alignment from Exonerate_coding2genome ATTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAACATCAGG-AAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAG gaggaggggttcttggcaacctcaagactatttgtattctttgactgcagGTTTGAGTTGGTGAAGGGCCTGCTACCCGCAGAGTACCACAAAGTCCTAATTAACATCAGGCAAAGCTGAGACCCGAGCAAAGAAGCATCGGGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGTCGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAGgtactgcatgactcaatcccaagctcttagtccccccccacccaaaatct Alignment from GeneWise ATTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAACATCAGG-AAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAG gaggaggggttcttggcaacctcaagactatttgtattctttgactgcagGTTTGAGTTGGTGAAGGGCCTGCTACCCGCAGAGTACCACAAAGTCCTAATTAACATCAGGCAAAGCTGAGACCCGAGCAAAGAAGCATCGGGCCCTGAGCCAGGCTGCTGTAGAGGAGGAGGAAGTCGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAGgtactgcatgactcaatcccaagctcttagtccccccccacccaaaatct #### Rrp12_ID8299_24 --> 2 - 1 Original Alignment acGCTCTGCAGCGGTACCTTGTCCTCATCTATCCTGGCCTT-CTGGGTGCAGTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAg catccctgttcagccggtctttgagtattttgggatattcttggtctcagacGCTCTGCAACGTTACCTTGTCCTCATCTATCCTGGCCTTCCTGGGTGCGTTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAggtgaagtggatggactgctcttggcaaatcaagcatacttaactgatggg Alignment from CESAR acGCTCTGCAGCGGTACCTTGTCCTCATCTATCCTGGCCTT-CTGGGTGCAGTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAg catccctgttcagccggtctttgagtattttgggatattcttggtctcagacGCTCTGCAACGTTACCTTGTCCTCATCTATCCTGGCCTTCCTGGGTGCGTTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAggtgaagtggatggactgctcttggcaaatcaagcatacttaactgatggg Alignment from Spaln_aa2Genome ACGCTCTGCAGCGGTACCTTGTCCTCATCTATCCTGGCCTTCTGGGTGCA-GTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAG catccctgttcagccggtctttgagtattttgggatattcttggtctcagACGCTCTGCAACGTTACCTTGTCCTCATCTATCCTGGCCTTCCTGGGTGCgTTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAGgtgaagtggatggactgctcttggcaaatcaagcatacttaactgatggg Alignment from Spaln_nt2Genome ACGCTCTGCAGCGGTACCTTGTCCTCATCTATCCTGGCCTT-CTGGGTGCAGTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAG catccctgttcagccggtctttgagtattttgggatattcttggtctcagACGCTCTGCAACGTTACCTTGTCCTCATCTATCCTGGCCTTCCTGGGTGCGTTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAGgtgaagtggatggactgctcttggcaaatcaagcatacttaactgatggg Alignment from Pairagon ACGCTCTGCAGCGGTACCTTGTCCTCATCTATCCTGGCCTT-CTGGGTGCAGTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAG catccctgttcagccggtctttgagtattttgggatattcttggtctcagACGCTCTGCAACGTTACCTTGTCCTCATCTATCCTGGCCTTCCTGGGTGCGTTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAGgtgaagtggatggactgctcttggcaaatcaagcatacttaactgatggg Alignment from Exonerate_protein2genome ACGCTCTGCAGCGGTACCTTGTCCTCATCTATCCTGGCCTT-CTGGGTGCAGTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAG catccctgttcagccggtctttgagtattttgggatattcttggtctcagACGCTCTGCAACGTTACCTTGTCCTCATCTATCCTGGCCTTCCTGGGTGCGTTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAGgtgaagtggatggactgctcttggcaaatcaagcatacttaactgatggg Alignment from Exonerate_coding2genome ACGCTCTGCAGCGGTACCTTGTCCTCATCTATCCTGGCCTT-CTGGGTGCAGTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAG catccctgttcagccggtctttgagtattttgggatattcttggtctcagACGCTCTGCAACGTTACCTTGTCCTCATCTATCCTGGCCTTCCTGGGTGCGTTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAGgtgaagtggatggactgctcttggcaaatcaagcatacttaactgatggg Alignment from GeneWise ACGCTCTGCAGCGGTACCTTGTCCTCATCTATCCTGGCCTT-CTGGGTGCAGTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAG catccctgttcagccggtctttgagtattttgggatattcttggtctcagACGCTCTGCAACGTTACCTTGTCCTCATCTATCCTGGCCTTCCTGGGTGCGTTTACCACAGTTAGTTGCAGCATTTTGGCTCTGACCCACCTCTTGTTTGAGTTCAAAGgtgaagtggatggactgctcttggcaaatcaagcatacttaactgatggg #### Rrp12_ID8301_22 --> 0 - 0 Original Alignment CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCT-GAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG ggttagtgcaaagcgacaggggggccccgcctcccctgctttccccacagCCCCGTTTGAAGTGCCTCATACATATTGTGAAGACACTATTGGCTCGAGCATGAGGAGTTCATAGCTGCTCTGATCCCAGAGgttagcggatgtggagggctgtgggttcccaagagacacctgaggaggga Alignment from CESAR CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCT-GAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG ggttagtgcaaagcgacaggggggccccgcctcccctgctttccccacagCCCCGTTTGAAGTGCCTCATACATATTGTGAAGACACTATTGGCTCGAGCATGAGGAGTTCATAGCTGCTCTGATCCCAGAGgttagcggatgtggagggctgtgggttcccaagagacacctgaggaggga Alignment from Spaln_aa2Genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCT-GAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG ggttagtgcaaagcgacaggggggccccgcctcccctgctttccccacagCCCCGTTTGAAGTGCCTCATACATATTGTGAAGACACTATTGGCTcGAGCATGAGGAGTTCATAGCTGCTCTGATCCCAGAGgttagcggatgtggagggctgtgggttcccaagagacacctgaggaggga Alignment from Spaln_nt2Genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCT-GAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG ggttagtgcaaagcgacaggggggccccgcctcccctgctttccccacagCCCCGTTTGAAGTGCCTCATACATATTGTGAAGACACTATTGGCTCGAGCATGAGGAGTTCATAGCTGCTCTGATCCCAGAGgttagcggatgtggagggctgtgggttcccaagagacacctgaggaggga Alignment from Pairagon CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCT-GAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG ggttagtgcaaagcgacaggggggccccgcctcccctgctttccccacagCCCCGTTTGAAGTGCCTCATACATATTGTGAAGACACTATTGGCTCGAGCATGAGGAGTTCATAGCTGCTCTGATCCCAGAGgttagcggatgtggagggctgtgggttcccaagagacacctgaggaggga Alignment from Exonerate_protein2genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCT-GAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG ggttagtgcaaagcgacaggggggccccgcctcccctgctttccccacagCCCCGTTTGAAGTGCCTCATACATATTGTGAAGACACTATTGGCTCGAGCATGAGGAGTTCATAGCTGCTCTGATCCCAGAGgttagcggatgtggagggctgtgggttcccaagagacacctgaggaggga Alignment from Exonerate_coding2genome CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTGTCGGCT-GAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG ggttagtgcaaagcgacaggggggccccgcctcccctgctttccccacagCCCCGTTTGAAGTGCCTCATACATATTGTGAAGACACTATTGGCTCGAGCATGAGGAGTTCATAGCTGCTCTGATCCCAGAGgttagcggatgtggagggctgtgggttcccaagagacacctgaggaggga Alignment from GeneWise CCCCGTTTGAAGTGCCTCATACATATTGTGAAGACGCTG-TCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG ggttagtgcaaagcgacaggggggccccgcctcccctgctttccccacagCCCCGTTTGAAGTGCCTCATACATATTGTGAAGACACTATTGGCTCGAGCATGAGGAGTTCATAGCTGCTCTGATCCCAGAGgttagcggatgtggagggctgtgggttcccaagagacacctgaggaggga #### Rrp12_ID8304_19 --> 0 - 2 Original Alignment TTGGTGAATAGCTTCCTGGAAAAAGCCACC-GAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCag gtgcctgctgctatggtcactctgtttaacctccttcctgactggtccagCTGGTGAATAGCTTCCTGGACAAAGCAACCCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCaggtaacatttctgagcttcctcatgtggcttgggagatgcagggtacctag Alignment from CESAR TTGGTGAATAGCTTCCTGGAAAAAGCCACC-GAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCag gtgcctgctgctatggtcactctgtttaacctccttcctgactggtccagCTGGTGAATAGCTTCCTGGACAAAGCAACCCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCaggtaacatttctgagcttcctcatgtggcttgggagatgcagggtacctag Alignment from Spaln_aa2Genome TTGGTGAATAGCTTCCTGGAAAAAGCCACC-GAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG gtgcctgctgctatggtcactctgtttaacctccttcctgactggtccagCTGGTGAATAGCTTCCTGGACAAAGCAACCcGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAGgtaacatttctgagcttcctcatgtggcttgggagatgcagggtacctag Alignment from Spaln_nt2Genome TTGGTGAATAGCTTCCTGGAAAAAGCCACC-GAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG gtgcctgctgctatggtcactctgtttaacctccttcctgactggtccagCTGGTGAATAGCTTCCTGGACAAAGCAACCCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAGgtaacatttctgagcttcctcatgtggcttgggagatgcagggtacctag Alignment from Pairagon TTGGTGAATAGCTTCCTGGAAAAAGCCA-CCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG gtgcctgctgctatggtcactctgtttaacctccttcctgactggtccagCTGGTGAATAGCTTCCTGGACAAAGCAACCCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAGgtaacatttctgagcttcctcatgtggcttgggagatgcagggtacctag Alignment from Exonerate_protein2genome TTGGTGAATAGCTTCCTGGAAAAAGCCACC-GAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG gtgcctgctgctatggtcactctgtttaacctccttcctgactggtccagCTGGTGAATAGCTTCCTGGACAAAGCAACCCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAGgtaacatttctgagcttcctcatgtggcttgggagatgcagggtacctag Alignment from Exonerate_coding2genome TTGGTGAATAGCTTCCTGGAAAAAGCCACC-GAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG gtgcctgctgctatggtcactctgtttaacctccttcctgactggtccagCTGGTGAATAGCTTCCTGGACAAAGCAACCCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAGgtaacatttctgagcttcctcatgtggcttgggagatgcagggtacctag Alignment from GeneWise TTGGTGAATAGCTTCCTGGAAAAAGCC-ACCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAG gtgcctgctgctatggtcactctgtttaacctccttcctgactggtccagCTGGTGAATAGCTTCCTGGACAAAGCAACCCGAGAAGGTTCTCGATCCTGCCAGCTCTGATTTCACCAGgtaacatttctgagcttcctcatgtggcttgggagatgcagggtacctag #### Rrp12_ID8305_18 --> 2 - 0 Original Alignment agGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCA-ATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG atttactattagctttttccaaacaacgctcctcttctgatcttacccagagGCAGACCGAGCTGAAGTGAGTCGCTTTGCCAAAAACTTCCTGCCACATCCTCTTCAACCTGTACGGGCAACCAGTTGCAGCTGGAGAGACAGCC---CCTCGCCGTGCTGTGCTGGAA---ATCAAAACTTATCTCACCATAACCGAGGCCCAGgtaggtgctgtgccttggaagggtcaacattcccttcaggtgctggagtt Alignment from CESAR agGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCA-ATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG atttactattagctttttccaaacaacgctcctcttctgatcttacccagagGCAGACCGAGCTGAAGTGAGTCGCTTTGCCAAAAACTTCCTGCCACATCCTCTTCAACCTGTACGGGCAACCAGTTGCAGCTGGAGAG---ACAGCCCCTCGCCGTGCTGTGCTGGAA---ATCAAAACTTATCTCACCATAACCGAGGCCCAGgtaggtgctgtgccttggaagggtcaacattcccttcaggtgctggagtt Alignment from Spaln_aa2Genome AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCA-ATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG atttactattagctttttccaaacaacgctcctcttctgatcttacccagAGGCAGACCGAGCTGAAGTGAGTCGCTTTGCCAAAAACTTCCTGCCAcATCCTCTTCAACCTGTACGGGCAACCAGTTGCAGCTGGAGAG---ACAGCCCCTCGCCGTGCTGTGCTGGAA---ATCAAAACTTATCTCACCATAACCGAGGCCCAGgtaggtgctgtgccttggaagggtcaacattcccttcaggtgctggagtt Alignment from Spaln_nt2Genome AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCA-ATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG atttactattagctttttccaaacaacgctcctcttctgatcttacccagAGGCAGACCGAGCTGAAGTGAGTCGCTTTGCCAAAAACTTCCTGCCACATCCTCTTCAACCTGTACGGGCAACCAGTTGCAGCTGGAGA---GACAGCCCCTCGCCGTGCTGTGCTGGAAA---TCAAAACTTATCTCACCATAACCGAGGCCCAGgtaggtgctgtgccttggaagggtcaacattcccttcaggtgctggagtt Alignment from Pairagon AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCA-ATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG atttactattagctttttccaaacaacgctcctcttctgatcttacccagAGGCAGACCGAGCTGAAGTGAGTCGCTTTGCCAAAAACTTCCTGCCACATCCTCTTCAACCTGTACGGGCAACCAGTTGCAGCTGGAGA---GACAGCCCCTCGCCGTGCTGTGCTGGAA---ATCAAAACTTATCTCACCATAACCGAGGCCCAGgtaggtgctgtgccttggaagggtcaacattcccttcaggtgctggagtt Alignment from Exonerate_protein2genome AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCA-ATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG atttactattagctttttccaaacaacgctcctcttctgatcttacccagAGGCAGACCGAGCTGAAGTGAGTCGCTTTGCCAAAAACTTCCTGCCACATCCTCTTCAACCTGTACGGGCAACCAGTTGCAGCTGGAGAG---ACAGCCCCTCGCCGTGCTGTGCTGGAA---ATCAAAACTTATCTCACCATAACCGAGGCCCAGgtaggtgctgtgccttggaagggtcaacattcccttcaggtgctggagtt Alignment from Exonerate_coding2genome AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCA-ATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG atttactattagctttttccaaacaacgctcctcttctgatcttacccagAGGCAGACCGAGCTGAAGTGAGTCGCTTTGCCAAAAACTTCCTGCCACATCCTCTTCAACCTGTACGGGCAACCAGTTGCAGCTGGAGAG---ACAGCCCCTCGCCGTGCTGTGCTGGAA---ATCAAAACTTATCTCACCATAACCGAGGCCCAGgtaggtgctgtgccttggaagggtcaacattcccttcaggtgctggagtt Alignment from GeneWise AGGCTGACCGAGCTGAAGTGAGCCGCTTTGCCAAAAACTTCCTGCCA-ATCCTCTTCAACCTGTATGGGCAGCCTGTTGCAGCTGGAGAGGCGGCAGCCCCTCGCCGTGCTGTGCTGGAAACCATCAAAACTTACCTCACCATAACTGAGGCTCAG atttactattagctttttccaaacaacgctcctcttctgatcttacccagAGGCAGACCGAGCTGAAGTGAGTCGCTTTGCCAAAAACTTCCTGCCACATCCTCTTCAACCTGTACGGGCAACCAGTTGCAGCTGGAGAGACAGCC---CCTCGCCGTGCTGTGCTGGAA---ATCAAAACTTATCTCACCATAACCGAGGCCCAGgtaggtgctgtgccttggaagggtcaacattcccttcaggtgctggagtt #### Rrp12_ID8314_9 --> 0 - 0 Original Alignment CTTGTGACAGCCTGTGCCATGCAGGCCTTCCATAACCTCTTCCATGCCAAGCCCAGC-CCTAGCACCCTGTCAGCAGAACTCAACGCCCAGATCGTCACG ggcagctgtggactttgtttctccttgccattgtcaatttatttttcaagCTTGTAACAGCCTGTGCCATGAAGGCCTTCCATAACCTGTTCCATGCCAAGCCCAGCCCCTAGCACCTTGTCAGCAGAGCTCAATGCCCAGATTGTCGCAgtgagtccagatgttgcaggagggtaggcttcatcactagggtagagtgc Alignment from CESAR CTTGTGACAGCCTGTGCCATGCAGGCCTTCCATAACCTCTTCCATGCCAAGCCCAGC-CCTAGCACCCTGTCAGCAGAACTCAACGCCCAGATCGTCACG ggcagctgtggactttgtttctccttgccattgtcaatttatttttcaagCTTGTAACAGCCTGTGCCATGAAGGCCTTCCATAACCTGTTCCATGCCAAGCCCAGCCCCTAGCACCTTGTCAGCAGAGCTCAATGCCCAGATTGTCGCAgtgagtccagatgttgcaggagggtaggcttcatcactagggtagagtgc Alignment from Spaln_aa2Genome CTTGTGACAGCCTGTGCCATGCAGGCCTTCCATAACCTCTTCCATGCCAAGCCCAGC-CCTAGCACCCTGTCAGCAGAACTCAACGCCCAGATCGTCACG ggcagctgtggactttgtttctccttgccattgtcaatttatttttcaagCTTGTAACAGCCTGTGCCATGAAGGCCTTCCATAACCTGTTCCATGCCAAGCCCAGCcCCTAGCACCTTGTCAGCAGAGCTCAATGCCCAGATTGTCGCAgtgagtccagatgttgcaggagggtaggcttcatcactagggtagagtgc Alignment from Spaln_nt2Genome CTTGTGACAGCCTGTGCCATGCAGGCCTTCCATAACCTCTTCCATGCCAAGCCCAGCC-CTAGCACCCTGTCAGCAGAACTCAACGCCCAGATCGTCACG ggcagctgtggactttgtttctccttgccattgtcaatttatttttcaagCTTGTAACAGCCTGTGCCATGAAGGCCTTCCATAACCTGTTCCATGCCAAGCCCAGCCCCTAGCACCTTGTCAGCAGAGCTCAATGCCCAGATTGTCGCAgtgagtccagatgttgcaggagggtaggcttcatcactagggtagagtgc Alignment from Pairagon CTTGTGACAGCCTGTGCCATGCAGGCCTTCCATAACCTCTTCCATGCCAAGCCCAG-CCCTAGCACCCTGTCAGCAGAACTCAACGCCCAGATCGTCACG ggcagctgtggactttgtttctccttgccattgtcaatttatttttcaagCTTGTAACAGCCTGTGCCATGAAGGCCTTCCATAACCTGTTCCATGCCAAGCCCAGCCCCTAGCACCTTGTCAGCAGAGCTCAATGCCCAGATTGTCGCAgtgagtccagatgttgcaggagggtaggcttcatcactagggtagagtgc Alignment from Exonerate_protein2genome CTTGTGACAGCCTGTGCCATGCAGGCCTTCCATAACCTCTTCCATGCCAAGCCCAGC-CCTAGCACCCTGTCAGCAGAACTCAACGCCCAGATCGTCACG ggcagctgtggactttgtttctccttgccattgtcaatttatttttcaagCTTGTAACAGCCTGTGCCATGAAGGCCTTCCATAACCTGTTCCATGCCAAGCCCAGCCCCTAGCACCTTGTCAGCAGAGCTCAATGCCCAGATTGTCGCAgtgagtccagatgttgcaggagggtaggcttcatcactagggtagagtgc Alignment from Exonerate_coding2genome CTTGTGACAGCCTGTGCCATGCAGGCCTTCCATAACCTCTTCCATGCCAAGCCCAGC-CCTAGCACCCTGTCAGCAGAACTCAACGCCCAGATCGTCACG ggcagctgtggactttgtttctccttgccattgtcaatttatttttcaagCTTGTAACAGCCTGTGCCATGAAGGCCTTCCATAACCTGTTCCATGCCAAGCCCAGCCCCTAGCACCTTGTCAGCAGAGCTCAATGCCCAGATTGTCGCAgtgagtccagatgttgcaggagggtaggcttcatcactagggtagagtgc Alignment from GeneWise CTTGTGACAGCCTGTGCCATGCAGGCCTTCCATAACCTCTTCCATGCCAAGCCC-AGCCCTAGCACCCTGTCAGCAGAACTCAACGCCCAGATCGTCACG ggcagctgtggactttgtttctccttgccattgtcaatttatttttcaagCTTGTAACAGCCTGTGCCATGAAGGCCTTCCATAACCTGTTCCATGCCAAGCCCAGCCCCTAGCACCTTGTCAGCAGAGCTCAATGCCCAGATTGTCGCAgtgagtccagatgttgcaggagggtaggcttcatcactagggtagagtgc #### Rrp12_ID8315_8 --> 2 - 0 Original Alignment gtTCCAAAGAGGCCACCACCACG-CTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG tggggaagcaggagtagtctagaagaagcccatactctcctacctttcaggtTCCAAAGAGGCCACAACCACGCCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGTTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTAATGACCTTGAACCCTGTGgtgagggctagacacaggaggaaggggaaattagtgagtgaggggggcca Alignment from CESAR gtTCCAAAGAGGCCACCACCACG-CTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG tggggaagcaggagtagtctagaagaagcccatactctcctacctttcaggtTCCAAAGAGGCCACAACCACGCCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGTTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTAATGACCTTGAACCCTGTGgtgagggctagacacaggaggaaggggaaattagtgagtgaggggggcca Alignment from Spaln_aa2Genome GTTCCAAAGAGGCCACCACCACG-CTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG tggggaagcaggagtagtctagaagaagcccatactctcctacctttcagGTTCCAAAGAGGCCACAACCACGcCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGTTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTAATGACCTTGAACCCTGTGgtgagggctagacacaggaggaaggggaaattagtgagtgaggggggcca Alignment from Spaln_nt2Genome GTTCCAAAGAGGCCACCACCACG-CTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG tggggaagcaggagtagtctagaagaagcccatactctcctacctttcagGTTCCAAAGAGGCCACAACCACGCCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGTTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTAATGACCTTGAACCCTGTGgtgagggctagacacaggaggaaggggaaattagtgagtgaggggggcca Alignment from Pairagon GTTCCAAAGAGGCCACCACCACG-CTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG tggggaagcaggagtagtctagaagaagcccatactctcctacctttcagGTTCCAAAGAGGCCACAACCACGCCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGTTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTAATGACCTTGAACCCTGTGgtgagggctagacacaggaggaaggggaaattagtgagtgaggggggcca Alignment from Exonerate_protein2genome GTTCCAAAGAGGCCACCACCACG-CTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG tggggaagcaggagtagtctagaagaagcccatactctcctacctttcagGTTCCAAAGAGGCCACAACCACGCCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGTTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTAATGACCTTGAACCCTGTGgtgagggctagacacaggaggaaggggaaattagtgagtgaggggggcca Alignment from Exonerate_coding2genome GTTCCAAAGAGGCCACCACCACG-CTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG tggggaagcaggagtagtctagaagaagcccatactctcctacctttcagGTTCCAAAGAGGCCACAACCACGCCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGTTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTAATGACCTTGAACCCTGTGgtgagggctagacacaggaggaaggggaaattagtgagtgaggggggcca Alignment from GeneWise -GCCACCACCACGCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGCTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTCATGACCTTGAACCATGTG tggggaagcaggagtagtctagaagaagcccatactctcctacctttcaggttccaaagagGCCACAACCACGCCTGCATATGCTAACACTGCTGAAGGACATGCTGCCCTGTTTCCCGGAAGGCCTGGTGAAGAGCTGCAGTGAGACTCTGCTTCGGGTAATGACCTTGAACCCTGTGgtgagggctagacacaggaggaaggggaaattagtgagtgaggggggcca #### Sart1_ID959_16 --> 2 - 2 Original Alignment gaCTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCC-TCAGCAGTGTACTGCATCGAGGATAAGat ctccgagggttctgtctgaagcctgggattttattactttatgaatataggaCTGCTAGAGACCACAGTACAAAAGGTGGCCTGGGTGAAGGCTCCCAATAAGTCATTGCCCCTCAGCAGTGTACTGCATAGAGGATAAGatgtaagagtcaccatggcaacatgacatagggacagctatgaacatgggga Alignment from CESAR gaCTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTG-CCCTCAGCAGTGTACTGCATCGAGGATAAGat ctccgagggttctgtctgaagcctgggattttattactttatgaatataggaCTGCTAGAGACCACAGTACAAAAGGTGGCCTGGGTGAAGGCTCCCAATAAGTCATTGCCCCTCAGCAGTGTACTGCATAGAGGATAAGatgtaagagtcaccatggcaacatgacatagggacagctatgaacatgggga Alignment from Spaln_aa2Genome GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCC-TCAGCAGTGTACTGCATCGAGGATAAGAT ctccgagggttctgtctgaagcctgggattttattactttatgaatatagGACTGCTAGAGACCACAGTACAAAAGGTGGCCTGGGTGAAGGCTCCCAATAAGTCATTGCCCcTCAGCAGTGTACTGCATAGAGGATAAGATgtaagagtcaccatggcaacatgacatagggacagctatgaacatgggga Alignment from Spaln_nt2Genome GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCC-CTCAGCAGTGTACTGCATCGAGGATAAGAT ctccgagggttctgtctgaagcctgggattttattactttatgaatatagGACTGCTAGAGACCACAGTACAAAAGGTGGCCTGGGTGAAGGCTCCCAATAAGTCATTGCCCCTCAGCAGTGTACTGCATAGAGGATAAGATgtaagagtcaccatggcaacatgacatagggacagctatgaacatgggga Alignment from Pairagon GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTG-CCCTCAGCAGTGTACTGCATCGAGGATAAGAT ctccgagggttctgtctgaagcctgggattttattactttatgaatatagGACTGCTAGAGACCACAGTACAAAAGGTGGCCTGGGTGAAGGCTCCCAATAAGTCATTGCCCCTCAGCAGTGTACTGCATAGAGGATAAGATgtaagagtcaccatggcaacatgacatagggacagctatgaacatgggga Alignment from Exonerate_protein2genome GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTG-CCCTCAGCAGTGTACTGCATCGAGGATAAGAT ctccgagggttctgtctgaagcctgggattttattactttatgaatatagGACTGCTAGAGACCACAGTACAAAAGGTGGCCTGGGTGAAGGCTCCCAATAAGTCATTGCCCCTCAGCAGTGTACTGCATAGAGGATAAGATgtaagagtcaccatggcaacatgacatagggacagctatgaacatgggga Alignment from Exonerate_coding2genome GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTG-CCCTCAGCAGTGTACTGCATCGAGGATAAGAT ctccgagggttctgtctgaagcctgggattttattactttatgaatatagGACTGCTAGAGACCACAGTACAAAAGGTGGCCTGGGTGAAGGCTCCCAATAAGTCATTGCCCCTCAGCAGTGTACTGCATAGAGGATAAGATgtaagagtcaccatggcaacatgacatagggacagctatgaacatgggga Alignment from GeneWise GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCC-TCAGCAGTGTACTGCATCGAGGATAAGAT ctccgagggttctgtctgaagcctgggattttattactttatgaatatagGACTGCTAGAGACCACAGTACAAAAGGTGGCCTGGGTGAAGGCTCCCAATAAGTCATTGCCCCTCAGCAGTGTACTGCATAGAGGATAAGATgtaagagtcaccatggcaacatgacatagggacagctatgaacatgggga #### Sart1_ID960_15 --> 0 - 1 Original Alignment TTCTCTGCTTCCTCTACCACCATCCTGGATGAG-GAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAg tggatggaggatatggggcaaccttctcctcttccctctctcctcttcagTTCTCTGCTTCCTCTACCACCATCCTGGATGAGCGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAggtgagtgctcaggaagggtgctccggcagtgtgtgtattttagccaggac Alignment from CESAR TTCTCTGCTTCCTCTACCACCATCCTGGATGAG-GAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAg tggatggaggatatggggcaaccttctcctcttccctctctcctcttcagTTCTCTGCTTCCTCTACCACCATCCTGGATGAGCGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAggtgagtgctcaggaagggtgctccggcagtgtgtgtattttagccaggac Alignment from Spaln_aa2Genome TTCTCTGCTTCCTCTACCACCATCCTGGATGAG-GAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggatggaggatatggggcaaccttctcctcttccctctctcctcttcagTTCTCTGCTTCCTCTACCACCATCCTGGATGAGcGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAGgtgagtgctcaggaagggtgctccggcagtgtgtgtattttagccaggac Alignment from Spaln_nt2Genome TTCTCTGCTTCCTCTACCACCATCCTGGATGAG-GAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggatggaggatatggggcaaccttctcctcttccctctctcctcttcagTTCTCTGCTTCCTCTACCACCATCCTGGATGAGCGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAGgtgagtgctcaggaagggtgctccggcagtgtgtgtattttagccaggac Alignment from Pairagon TTCTCTGCTTCCTCTACCACCATCCTGGATGAG-GAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggatggaggatatggggcaaccttctcctcttccctctctcctcttcagTTCTCTGCTTCCTCTACCACCATCCTGGATGAGCGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAGgtgagtgctcaggaagggtgctccggcagtgtgtgtattttagccaggac Alignment from Exonerate_protein2genome TTCTCTGCTTCCTCTACCACCATCCTGGATGAG-GAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggatggaggatatggggcaaccttctcctcttccctctctcctcttcagTTCTCTGCTTCCTCTACCACCATCCTGGATGAGCGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAGgtgagtgctcaggaagggtgctccggcagtgtgtgtattttagccaggac Alignment from Exonerate_coding2genome TTCTCTGCTTCCTCTACCACCATCCTGGATGAG-GAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggatggaggatatggggcaaccttctcctcttccctctctcctcttcagTTCTCTGCTTCCTCTACCACCATCCTGGATGAGCGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAGgtgagtgctcaggaagggtgctccggcagtgtgtgtattttagccaggac Alignment from GeneWise TTCTCTGCTTCCTCTACCACCATCCTGGATGAG-GAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggatggaggatatggggcaaccttctcctcttccctctctcctcttcagTTCTCTGCTTCCTCTACCACCATCCTGGATGAGCGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAGgtgagtgctcaggaagggtgctccggcagtgtgtgtattttagccaggac #### Sart1_ID961_14 --> 0 - 0 Original Alignment GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAG-GAGAAGCAGCATCAGGAT tagcaggtagggttgagtctgtccatgagtttacttctttatacttctagGACTTTGAGAGGGATGAGGAGCGCTCAGCCAATGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGCGAGAAGCAGCATCAGGATgtaagaactgatgggcatgggtgtggggatccagggtagctgttcagtac Alignment from CESAR GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAG-GAGAAGCAGCATCAGGAT tagcaggtagggttgagtctgtccatgagtttacttctttatacttctagGACTTTGAGAGGGATGAGGAGCGCTCAGCCAATGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGCGAGAAGCAGCATCAGGATgtaagaactgatgggcatgggtgtggggatccagggtagctgttcagtac Alignment from Spaln_aa2Genome GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAG-GAGAAGCAGCATCAGGAT tagcaggtagggttgagtctgtccatgagtttacttctttatacttctagGACTTTGAGAGGGATGAGGAGCGCTCAGCCAATGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGcGAGAAGCAGCATCAGGATgtaagaactgatgggcatgggtgtggggatccagggtagctgttcagtac Alignment from Spaln_nt2Genome GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAG-GAGAAGCAGCATCAGGAT tagcaggtagggttgagtctgtccatgagtttacttctttatacttctagGACTTTGAGAGGGATGAGGAGCGCTCAGCCAATGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGCGAGAAGCAGCATCAGGATgtaagaactgatgggcatgggtgtggggatccagggtagctgttcagtac Alignment from Pairagon GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAG-GAGAAGCAGCATCAGGAT tagcaggtagggttgagtctgtccatgagtttacttctttatacttctagGACTTTGAGAGGGATGAGGAGCGCTCAGCCAATGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGCGAGAAGCAGCATCAGGATgtaagaactgatgggcatgggtgtggggatccagggtagctgttcagtac Alignment from Exonerate_protein2genome GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAG-GAGAAGCAGCATCAGGAT tagcaggtagggttgagtctgtccatgagtttacttctttatacttctagGACTTTGAGAGGGATGAGGAGCGCTCAGCCAATGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGCGAGAAGCAGCATCAGGATgtaagaactgatgggcatgggtgtggggatccagggtagctgttcagtac Alignment from Exonerate_coding2genome GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAG-GAGAAGCAGCATCAGGAT tagcaggtagggttgagtctgtccatgagtttacttctttatacttctagGACTTTGAGAGGGATGAGGAGCGCTCAGCCAATGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGCGAGAAGCAGCATCAGGATgtaagaactgatgggcatgggtgtggggatccagggtagctgttcagtac Alignment from GeneWise GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGAT-GAGGAGAAGCAGCATCAGGAT tagcaggtagggttgagtctgtccatgagtttacttctttatacttctagGACTTTGAGAGGGATGAGGAGCGCTCAGCCAATGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGCGAGAAGCAGCATCAGGATgtaagaactgatgggcatgggtgtggggatccagggtagctgttcagtac #### Sart1_ID963_12 --> 2 - 0 Original Alignment agGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTG-GAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ctgcaggcaagggcagttgtgtgagcagtttgttttgtttccttcttaagagGATGGGGGGGCTCTCCCGCCAGGGTCACCAGATGGGCTGCGAGGAAGATGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAGgtgagtcagtgcaaggacatcatgtgggacttgtctctgagtgcatgagg Alignment from CESAR agGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTG-GAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ctgcaggcaagggcagttgtgtgagcagtttgttttgtttccttcttaagagGATGGGGGGGCTCTCCCGCCAGGGTCACCAGATGGGCTGCGAGGAAGATGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAGgtgagtcagtgcaaggacatcatgtgggacttgtctctgagtgcatgagg Alignment from Spaln_aa2Genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTG-GAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ctgcaggcaagggcagttgtgtgagcagtttgttttgtttccttcttaagAGGATGGGGGGGCTCTCCCGCCAGGGTCACCAGATGGGCTGcGAGGAAGATGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAGgtgagtcagtgcaaggacatcatgtgggacttgtctctgagtgcatgagg Alignment from Spaln_nt2Genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTG-GAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ctgcaggcaagggcagttgtgtgagcagtttgttttgtttccttcttaagAGGATGGGGGGGCTCTCCCGCCAGGGTCACCAGATGGGCTGCGAGGAAGATGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAGgtgagtcagtgcaaggacatcatgtgggacttgtctctgagtgcatgagg Alignment from Pairagon AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTG-GAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ctgcaggcaagggcagttgtgtgagcagtttgttttgtttccttcttaagAGGATGGGGGGGCTCTCCCGCCAGGGTCACCAGATGGGCTGCGAGGAAGATGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAGgtgagtcagtgcaaggacatcatgtgggacttgtctctgagtgcatgagg Alignment from Exonerate_protein2genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTG-GAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ctgcaggcaagggcagttgtgtgagcagtttgttttgtttccttcttaagAGGATGGGGGGGCTCTCCCGCCAGGGTCACCAGATGGGCTGCGAGGAAGATGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAGgtgagtcagtgcaaggacatcatgtgggacttgtctctgagtgcatgagg Alignment from Exonerate_coding2genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTG-GAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ctgcaggcaagggcagttgtgtgagcagtttgttttgtttccttcttaagAGGATGGGGGGGCTCTCCCGCCAGGGTCACCAGATGGGCTGCGAGGAAGATGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAGgtgagtcagtgcaaggacatcatgtgggacttgtctctgagtgcatgagg Alignment from GeneWise AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGG-CTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG ctgcaggcaagggcagttgtgtgagcagtttgttttgtttccttcttaagAGGATGGGGGGGCTCTCCCGCCAGGGTCACCAGATGGGCTGCGAGGAAGATGAGGCAGAGCTGGAGCTGCAGAAGCAGCTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAGgtgagtcagtgcaaggacatcatgtgggacttgtctctgagtgcatgagg #### Sart1_ID965_10 --> 0 - 2 Original Alignment GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAG-GTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCag ttcaagactaagggggcctgcacactccttaactccgatttcggttgtagGTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAACCCGAAAGAAGGAGCAGGAGCGTGATAATGCGGGCTGATGACTTGCTGCCCCTGGGTGATCAGACTCAGGATGGC---TTTGGATCAaggtgagtatggacgtggtagtgggtgcgaggtggagcagcttaagagatac Alignment from CESAR GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAG-GTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCag ttcaagactaagggggcctgcacactccttaactccgatttcggttgtagGTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAACCCGAAAGAAGGAGCAGGAGCGTGATAATGCGGGCTGATGACTTGCTGCCCCTGGGTGATCAGACTCAGGATGGC---TTTGGATCAaggtgagtatggacgtggtagtgggtgcgaggtggagcagcttaagagatac Alignment from Spaln_aa2Genome GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAG-GTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCAG ttcaagactaagggggcctgcacactccttaactccgatttcggttgtagGTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAACCCGAAAGAAGGAGCAGGAGcGTGATAATGCGGGCTGATGACTTGCTGCCCCTGGGTGATCAGACTCAGGATGGC---TTTGGATCAAGgtgagtatggacgtggtagtgggtgcgaggtggagcagcttaagagatac Alignment from Spaln_nt2Genome GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAG-GTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCAG ttcaagactaagggggcctgcacactccttaactccgatttcggttgtagGTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAACCCGAAAGAAGGAGCAGGAGCGTGATAATGCGGGCTGATGACTTGCTGCCCCTGGGTGATCAGACTCAGGATGG---CTTTGGATCAAGgtgagtatggacgtggtagtgggtgcgaggtggagcagcttaagagatac Alignment from Pairagon GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAG-GTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCAG ttcaagactaagggggcctgcacactccttaactccgatttcggttgtagGTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAACCCGAAAGAAGGAGCAGGAGCGTGATAATGCGGGCTGATGACTTGCTGCCCCTGGGTGATCAGACTCAGGATGG---CTTTGGATCAAGgtgagtatggacgtggtagtgggtgcgaggtggagcagcttaagagatac Alignment from Exonerate_protein2genome GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAG-GTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCAG ttcaagactaagggggcctgcacactccttaactccgatttcggttgtagGTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAACCCGAAAGAAGGAGCAGGAGCGTGATAATGCGGGCTGATGACTTGCTGCCCCTGGGTGATCAGACTCAGGATGGC---TTTGGATCAAGgtgagtatggacgtggtagtgggtgcgaggtggagcagcttaagagatac Alignment from Exonerate_coding2genome GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAG-GTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCAG ttcaagactaagggggcctgcacactccttaactccgatttcggttgtagGTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAACCCGAAAGAAGGAGCAGGAGCGTGATAATGCGGGCTGATGACTTGCTGCCCCTGGGTGATCAGACTCAGGATGGC---TTTGGATCAAGgtgagtatggacgtggtagtgggtgcgaggtggagcagcttaagagatac Alignment from GeneWise GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAG-GTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAGACTCAGGATGGGGACTTTGGATCCAG ttcaagactaagggggcctgcacactccttaactccgatttcggttgtagGTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAACCCGAAAGAAGGAGCAGGAGCGTGATAATGCGGGCTGATGACTTGCTGCCCCTGGGTGATCAGACTCAGGATGGC---TTTGGATCAAGgtgagtatggacgtggtagtgggtgcgaggtggagcagcttaagagatac #### Sart1_ID966_9 --> 0 - 0 Original Alignment CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAG-CTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aaatctggatttccatagcttctggtctctggctgtccctgtgtttccagCAAAAACCTCGTTCTATTCTGGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGAATGGCTGATGGCCTGAGGGAACAAGAGTTAGAAGAAATCCGCACCAAGCCTACGGCTGCCAGCTCAGTCTCTCAGTTCCATAGGGCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagtcaccactttgtgatggtacaatcagtcaacagctaagccaagta Alignment from CESAR CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAG-CTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aaatctggatttccatagcttctggtctctggctgtccctgtgtttccagCAAAAACCTCGTTCTATTCTGGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGAATGGCTGATGGCCTGAGGGAACAAGAGTTAGAAGAAATCCGCACCAAGCCTACGGCTGCCAGCTCAGTCTCTCAGTTCCATAGGGCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagtcaccactttgtgatggtacaatcagtcaacagctaagccaagta Alignment from Spaln_aa2Genome CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAG-CTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aaatctggatttccatagcttctggtctctggctgtccctgtgtttccagCAAAAACCTCGTTCTATTCTGGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGAATGGCTGATGGCCTGAGGGAACAAGAGTTAGAAGAAATCCGCACCAAGcCTACGGCTGCCAGCTCAGTCTCTCAGTTCCATAGGGCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagtcaccactttgtgatggtacaatcagtcaacagctaagccaagta Alignment from Spaln_nt2Genome CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAG-CTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aaatctggatttccatagcttctggtctctggctgtccctgtgtttccagCAAAAACCTCGTTCTATTCTGGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGAATGGCTGATGGCCTGAGGGAACAAGAGTTAGAAGAAATCCGCACCAAGCCTACGGCTGCCAGCTCAGTCTCTCAGTTCCATAGGGCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagtcaccactttgtgatggtacaatcagtcaacagctaagccaagta Alignment from Pairagon CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAG-CTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aaatctggatttccatagcttctggtctctggctgtccctgtgtttccagCAAAAACCTCGTTCTATTCTGGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGAATGGCTGATGGCCTGAGGGAACAAGAGTTAGAAGAAATCCGCACCAAGCCTACGGCTGCCAGCTCAGTCTCTCAGTTCCATAGGGCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagtcaccactttgtgatggtacaatcagtcaacagctaagccaagta Alignment from Exonerate_protein2genome CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAG-CTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aaatctggatttccatagcttctggtctctggctgtccctgtgtttccagCAAAAACCTCGTTCTATTCTGGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGAATGGCTGATGGCCTGAGGGAACAAGAGTTAGAAGAAATCCGCACCAAGCCTACGGCTGCCAGCTCAGTCTCTCAGTTCCATAGGGCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagtcaccactttgtgatggtacaatcagtcaacagctaagccaagta Alignment from Exonerate_coding2genome CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAG-CTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aaatctggatttccatagcttctggtctctggctgtccctgtgtttccagCAAAAACCTCGTTCTATTCTGGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGAATGGCTGATGGCCTGAGGGAACAAGAGTTAGAAGAAATCCGCACCAAGCCTACGGCTGCCAGCTCAGTCTCTCAGTTCCATAGGGCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagtcaccactttgtgatggtacaatcagtcaacagctaagccaagta Alignment from GeneWise CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAG-CTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG aaatctggatttccatagcttctggtctctggctgtccctgtgtttccagCAAAAACCTCGTTCTATTCTGGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGAATGGCTGATGGCCTGAGGGAACAAGAGTTAGAAGAAATCCGCACCAAGCCTACGGCTGCCAGCTCAGTCTCTCAGTTCCATAGGGCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagtcaccactttgtgatggtacaatcagtcaacagctaagccaagta #### Sart1_ID968_7 --> 0 - 1 Original Alignment GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTC-ACCCTCAAGGACAAAg cccagagttgggtggcatctggcttttgcatctctacttttatctgcaagGACCTGTACAGTGCCCGAGACCTGCAAGGCCTCACTGTGGAACACGCTATTGATTCTTTTCGAGAAGGGGAGACTGTGGTTCTCCACCCTCAAGGACAAAggtagctggtatctggtaactctgcttaggtctagaatgcaatggagatgt Alignment from CESAR GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTC-ACCCTCAAGGACAAAg cccagagttgggtggcatctggcttttgcatctctacttttatctgcaagGACCTGTACAGTGCCCGAGACCTGCAAGGCCTCACTGTGGAACACGCTATTGATTCTTTTCGAGAAGGGGAGACTGTGGTTCTCCACCCTCAAGGACAAAggtagctggtatctggtaactctgcttaggtctagaatgcaatggagatgt Alignment from Spaln_aa2Genome GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTC-ACCCTCAAGGACAAAG cccagagttgggtggcatctggcttttgcatctctacttttatctgcaagGACCTGTACAGTGCCCGAGACCTGCAAGGCCTCACTGTGGAACACGCTATTGATTCTTTTCGAGAAGGGGAGACTGTGGTTCTCcACCCTCAAGGACAAAGgtagctggtatctggtaactctgcttaggtctagaatgcaatggagatgt Alignment from Spaln_nt2Genome GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCT-CACCCTCAAGGACAAAG cccagagttgggtggcatctggcttttgcatctctacttttatctgcaagGACCTGTACAGTGCCCGAGACCTGCAAGGCCTCACTGTGGAACACGCTATTGATTCTTTTCGAGAAGGGGAGACTGTGGTTCTCCACCCTCAAGGACAAAGgtagctggtatctggtaactctgcttaggtctagaatgcaatggagatgt Alignment from Pairagon GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCT-CACCCTCAAGGACAAAG cccagagttgggtggcatctggcttttgcatctctacttttatctgcaagGACCTGTACAGTGCCCGAGACCTGCAAGGCCTCACTGTGGAACACGCTATTGATTCTTTTCGAGAAGGGGAGACTGTGGTTCTCCACCCTCAAGGACAAAGgtagctggtatctggtaactctgcttaggtctagaatgcaatggagatgt Alignment from Exonerate_protein2genome GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTC-ACCCTCAAGGACAAAG cccagagttgggtggcatctggcttttgcatctctacttttatctgcaagGACCTGTACAGTGCCCGAGACCTGCAAGGCCTCACTGTGGAACACGCTATTGATTCTTTTCGAGAAGGGGAGACTGTGGTTCTCCACCCTCAAGGACAAAGgtagctggtatctggtaactctgcttaggtctagaatgcaatggagatgt Alignment from Exonerate_coding2genome GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTC-ACCCTCAAGGACAAAG cccagagttgggtggcatctggcttttgcatctctacttttatctgcaagGACCTGTACAGTGCCCGAGACCTGCAAGGCCTCACTGTGGAACACGCTATTGATTCTTTTCGAGAAGGGGAGACTGTGGTTCTCCACCCTCAAGGACAAAGgtagctggtatctggtaactctgcttaggtctagaatgcaatggagatgt Alignment from GeneWise GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTC-CTCACCCTCAAGGACAAAG cccagagttgggtggcatctggcttttgcatctctacttttatctgcaagGACCTGTACAGTGCCCGAGACCTGCAAGGCCTCACTGTGGAACACGCTATTGATTCTTTTCGAGAAGGGGAGACTGTGGTTCTCCACCCTCAAGGACAAAGgtagctggtatctggtaactctgcttaggtctagaatgcaatggagatgt #### Sart1_ID969_6 --> 0 - 0 Original Alignment GCTAAGCTACTAGAGGAGATG-GACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ttttgggacaccgacaatgaggtcactgacctctgtgctgctgctcacagGCTAAGCTATTAGAGGAGATGCGATCAAGAGTTTGGTGTGAGCACTTTAGTTGAGGAGGAGTTTGAGCAGAGGCGACAGgtaagttccaatttccaaagattatctggtagacatcatttcaattttgg Alignment from CESAR GCTAAGCTACTAGAGGAGATG-GACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ttttgggacaccgacaatgaggtcactgacctctgtgctgctgctcacagGCTAAGCTATTAGAGGAGATGCGATCAAGAGTTTGGTGTGAGCACTTTAGTTGAGGAGGAGTTTGAGCAGAGGCGACAGgtaagttccaatttccaaagattatctggtagacatcatttcaattttgg Alignment from Spaln_aa2Genome GCTAAGCTACTAGAGGAGATG-GACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ttttgggacaccgacaatgaggtcactgacctctgtgctgctgctcacagGCTAAGCTATTAGAGGAGATGcGATCAAGAGTTTGGTGTGAGCACTTTAGTTGAGGAGGAGTTTGAGCAGAGGCGACAGgtaagttccaatttccaaagattatctggtagacatcatttcaattttgg Alignment from Spaln_nt2Genome GCTAAGCTACTAGAGGAGATG-GACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ttttgggacaccgacaatgaggtcactgacctctgtgctgctgctcacagGCTAAGCTATTAGAGGAGATGCGATCAAGAGTTTGGTGTGAGCACTTTAGTTGAGGAGGAGTTTGAGCAGAGGCGACAGgtaagttccaatttccaaagattatctggtagacatcatttcaattttgg Alignment from Pairagon GCTAAGCTACTAGAGGAGATG-GACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ttttgggacaccgacaatgaggtcactgacctctgtgctgctgctcacagGCTAAGCTATTAGAGGAGATGCGATCAAGAGTTTGGTGTGAGCACTTTAGTTGAGGAGGAGTTTGAGCAGAGGCGACAGgtaagttccaatttccaaagattatctggtagacatcatttcaattttgg Alignment from Exonerate_protein2genome GCTAAGCTACTAGAGGAGATG-GACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ttttgggacaccgacaatgaggtcactgacctctgtgctgctgctcacagGCTAAGCTATTAGAGGAGATGCGATCAAGAGTTTGGTGTGAGCACTTTAGTTGAGGAGGAGTTTGAGCAGAGGCGACAGgtaagttccaatttccaaagattatctggtagacatcatttcaattttgg Alignment from Exonerate_coding2genome GCTAAGCTACTAGAGGAGATG-GACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ttttgggacaccgacaatgaggtcactgacctctgtgctgctgctcacagGCTAAGCTATTAGAGGAGATGCGATCAAGAGTTTGGTGTGAGCACTTTAGTTGAGGAGGAGTTTGAGCAGAGGCGACAGgtaagttccaatttccaaagattatctggtagacatcatttcaattttgg Alignment from GeneWise ------ATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG ttttgggacaccgacaatgaggtcactgacctctgtgctgctgctcacaggctaagctattagAGGAGATGCGATCAAGAGTTTGGTGTGAGCACTTTAGTTGAGGAGGAGTTTGAGCAGAGGCGACAGgtaagttccaatttccaaagattatctggtagacatcatttcaattttgg #### Sart1_ID970_5 --> 1 - 0 Original Alignment gAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGAT-GATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG gcataccaagaacacatgtaggcttgatttctccacttgtgtcttcccagcAAAATAAAGACCCTAGGAGAGGATGACCCCTGGCTGGATCGACACTGCAGCCTGGATAGAGAGAAGCCGTCAGCTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgtaagggcacttggcaatgtagagcagttgccagggtggtctgtgctcag Alignment from CESAR gAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGAT-GATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG gcataccaagaacacatgtaggcttgatttctccacttgtgtcttcccagcAAAATAAAGACCCTAGGAGAGGATGACCCCTGGCTGGATCGACACTGCAGCCTGGATAGAGAGAAGCCGTCAGCTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgtaagggcacttggcaatgtagagcagttgccagggtggtctgtgctcag Alignment from Spaln_aa2Genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGAT-GATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG gcataccaagaacacatgtaggcttgatttctccacttgtgtcttcccagCAAAATAAAGACCCTAGGAGAGGATGACCCCTGGCTGGATcGACACTGCAGCCTGGATAGAGAGAAGCCGTCAGCTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgtaagggcacttggcaatgtagagcagttgccagggtggtctgtgctcag Alignment from Spaln_nt2Genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGAT-GATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG gcataccaagaacacatgtaggcttgatttctccacttgtgtcttcccagCAAAATAAAGACCCTAGGAGAGGATGACCCCTGGCTGGATCGACACTGCAGCCTGGATAGAGAGAAGCCGTCAGCTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgtaagggcacttggcaatgtagagcagttgccagggtggtctgtgctcag Alignment from Pairagon GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGAT-GATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG gcataccaagaacacatgtaggcttgatttctccacttgtgtcttcccagCAAAATAAAGACCCTAGGAGAGGATGACCCCTGGCTGGATCGACACTGCAGCCTGGATAGAGAGAAGCCGTCAGCTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgtaagggcacttggcaatgtagagcagttgccagggtggtctgtgctcag Alignment from Exonerate_protein2genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGAT-GATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG gcataccaagaacacatgtaggcttgatttctccacttgtgtcttcccagCAAAATAAAGACCCTAGGAGAGGATGACCCCTGGCTGGATCGACACTGCAGCCTGGATAGAGAGAAGCCGTCAGCTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgtaagggcacttggcaatgtagagcagttgccagggtggtctgtgctcag Alignment from Exonerate_coding2genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGAT-GATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG gcataccaagaacacatgtaggcttgatttctccacttgtgtcttcccagCAAAATAAAGACCCTAGGAGAGGATGACCCCTGGCTGGATCGACACTGCAGCCTGGATAGAGAGAAGCCGTCAGCTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgtaagggcacttggcaatgtagagcagttgccagggtggtctgtgctcag Alignment from GeneWise GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGAT-GATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG gcataccaagaacacatgtaggcttgatttctccacttgtgtcttcccagCAAAATAAAGACCCTAGGAGAGGATGACCCCTGGCTGGATCGACACTGCAGCCTGGATAGAGAGAAGCCGTCAGCTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgtaagggcacttggcaatgtagagcagttgccagggtggtctgtgctcag #### Sart1_ID971_4 --> 2 - 2 Original Alignment agGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGC-TTGCTGAACCAAAAATTGgg tccccaccagccatgggaagcatagccttgtcctcttccctccttcacagagGCAGGCACCAAGGAGGAATCTGTTGCAGCCGATGTTATCAACCCCATGGCCTTACGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAATGCCTTGCTGAACCAAAAGCTGgggtgagggtttcttagccaagggcagagctggctttcccattcttgtgtag Alignment from CESAR agGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGC-TTGCTGAACCAAAAATTGgg tccccaccagccatgggaagcatagccttgtcctcttccctccttcacagagGCAGGCACCAAGGAGGAATCTGTTGCAGCCGATGTTATCAACCCCATGGCCTTACGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAATGCCTTGCTGAACCAAAAGCTGgggtgagggtttcttagccaagggcagagctggctttcccattcttgtgtag Alignment from Spaln_aa2Genome AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTG-CTGAACCAAAAATTGGG tccccaccagccatgggaagcatagccttgtcctcttccctccttcacagAGGCAGGCACCAAGGAGGAATCTGTTGCAGCCGATGTTATCAACCCCATGGCCTTACGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAATGCCTTgCTGAACCAAAAGCTGGGgtgagggtttcttagccaagggcagagctggctttcccattcttgtgtag Alignment from Spaln_nt2Genome AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGC-TTGCTGAACCAAAAATTGGG tccccaccagccatgggaagcatagccttgtcctcttccctccttcacagAGGCAGGCACCAAGGAGGAATCTGTTGCAGCCGATGTTATCAACCCCATGGCCTTACGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAATGCCTTGCTGAACCAAAAGCTGGGgtgagggtttcttagccaagggcagagctggctttcccattcttgtgtag Alignment from Pairagon AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACG-CTTGCTGAACCAAAAATTGGG tccccaccagccatgggaagcatagccttgtcctcttccctccttcacagAGGCAGGCACCAAGGAGGAATCTGTTGCAGCCGATGTTATCAACCCCATGGCCTTACGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAATGCCTTGCTGAACCAAAAGCTGGGgtgagggtttcttagccaagggcagagctggctttcccattcttgtgtag Alignment from Exonerate_protein2genome AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAA-CGCTTGCTGAACCAAAAATTGGG tccccaccagccatgggaagcatagccttgtcctcttccctccttcacagAGGCAGGCACCAAGGAGGAATCTGTTGCAGCCGATGTTATCAACCCCATGGCCTTACGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAATGCCTTGCTGAACCAAAAGCTGGGgtgagggtttcttagccaagggcagagctggctttcccattcttgtgtag Alignment from Exonerate_coding2genome AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAA-CGCTTGCTGAACCAAAAATTGGG tccccaccagccatgggaagcatagccttgtcctcttccctccttcacagAGGCAGGCACCAAGGAGGAATCTGTTGCAGCCGATGTTATCAACCCCATGGCCTTACGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAATGCCTTGCTGAACCAAAAGCTGGGgtgagggtttcttagccaagggcagagctggctttcccattcttgtgtag Alignment from GeneWise AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGGGAAAATAAAG tccccaccagccatgggaagcatagccttgtcctcttccctccttcacagAGGCAGGCACCAAGGAGGAATCTGTTGCAGCCGATGTTATCAACCCCATGGCCTTACGACAGCGGGAAGAACTGCGGGAGAAGCTGGCAGCTGCCAAGGAAAAATGCCTTGCTGAACCAAAAGCTGGG---GTGAGGgtttcttagccaagggcagagctggctttcccattcttgtg #### Sec31b_ID9028_24 --> 0 - 0 Original Alignment AAAACAAAAAGGAAGCTGGAG-GAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctagcgtcaggagccattattagggtcagtgcttattttaatttatacagAAAACAAAAAGGAAGCTGGAGCGAGGCAGCCCGACACCTCGAATGTCTGTATGAGAAGCTTTGTGAAGGGACAgtaactcctctgcgcagggtacctacactcctgcccagtctcagagacat Alignment from CESAR AAAACAAAAAGGAAGCTGGAG-GAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctagcgtcaggagccattattagggtcagtgcttattttaatttatacagAAAACAAAAAGGAAGCTGGAGCGAGGCAGCCCGACACCTCGAATGTCTGTATGAGAAGCTTTGTGAAGGGACAgtaactcctctgcgcagggtacctacactcctgcccagtctcagagacat Alignment from Spaln_aa2Genome AAAACAAAAAGGAAGCTGGAG-GAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctagcgtcaggagccattattagggtcagtgcttattttaatttatacagAAAACAAAAAGGAAGCTGGAGcGAGGCAGCCCGACACCTCGAATGTCTGTATGAGAAGCTTTGTGAAGGGACAgtaactcctctgcgcagggtacctacactcctgcccagtctcagagacat Alignment from Spaln_nt2Genome AAAACAAAAAGGAAGCTGGAG-GAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctagcgtcaggagccattattagggtcagtgcttattttaatttatacagAAAACAAAAAGGAAGCTGGAGCGAGGCAGCCCGACACCTCGAATGTCTGTATGAGAAGCTTTGTGAAGGGACAgtaactcctctgcgcagggtacctacactcctgcccagtctcagagacat Alignment from Pairagon AAAACAAAAAGGAAGCTGGAG-GAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctagcgtcaggagccattattagggtcagtgcttattttaatttatacagAAAACAAAAAGGAAGCTGGAGCGAGGCAGCCCGACACCTCGAATGTCTGTATGAGAAGCTTTGTGAAGGGACAgtaactcctctgcgcagggtacctacactcctgcccagtctcagagacat Alignment from Exonerate_protein2genome AAAACAAAAAGGAAGCTGGAG-GAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctagcgtcaggagccattattagggtcagtgcttattttaatttatacagAAAACAAAAAGGAAGCTGGAGCGAGGCAGCCCGACACCTCGAATGTCTGTATGAGAAGCTTTGTGAAGGGACAgtaactcctctgcgcagggtacctacactcctgcccagtctcagagacat Alignment from Exonerate_coding2genome AAAACAAAAAGGAAGCTGGAG-GAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctagcgtcaggagccattattagggtcagtgcttattttaatttatacagAAAACAAAAAGGAAGCTGGAGCGAGGCAGCCCGACACCTCGAATGTCTGTATGAGAAGCTTTGTGAAGGGACAgtaactcctctgcgcagggtacctacactcctgcccagtctcagagacat Alignment from GeneWise GGAAGCTGGAGGAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctagcgtcaggagccattattagggtcagtgcttattttaatttatacagaaaacaaaaagGAAGCTGGAGCGAGGCAGCCCGACACCTCGAATGTCTGTATGAGAAGCTTTGTGAAGGGACAgtaactcctctgcgcagggtacctacactcctgcccagtctcagagacat #### Sec31b_ID9029_23 --> 0 - 0 Original Alignment CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGC-TTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT tagaccttagggaagtcacttccagttcctgaactcatgctcctcttcagCAACTCCAGCCATTGCCTCCTGAGAGGACAGAGAAGGAGTTGCCCGCAGAGCATCAGTGTGTCAAGGACAGTCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACTGCAACTGGCCTTgtaagaatgagtcttcccaaacctgcttcctcaagctgcactgttcagag Alignment from CESAR CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGC-TTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT tagaccttagggaagtcacttccagttcctgaactcatgctcctcttcagCAACTCCAGCCATTGCCTCCTGAGAGGACAGAGAAGGAGTTGCCCGCAGAGCATCAGTGTGTCAAGGACAGTCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACTGCAACTGGCCTTgtaagaatgagtcttcccaaacctgcttcctcaagctgcactgttcagag Alignment from Spaln_aa2Genome CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGC-TTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT tagaccttagggaagtcacttccagttcctgaactcatgctcctcttcagCAACTCCAGCCATTGCCTCCTGAGAGGACAGAGAAGGAGTTGCCCGCAGAGCATCAGTGTGTCAAGGACAGTcTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACTGCAACTGGCCTTgtaagaatgagtcttcccaaacctgcttcctcaagctgcactgttcagag Alignment from Spaln_nt2Genome CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAG-CTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT tagaccttagggaagtcacttccagttcctgaactcatgctcctcttcagCAACTCCAGCCATTGCCTCCTGAGAGGACAGAGAAGGAGTTGCCCGCAGAGCATCAGTGTGTCAAGGACAGTCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACTGCAACTGGCCTTgtaagaatgagtcttcccaaacctgcttcctcaagctgcactgttcagag Alignment from Pairagon CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAG-CTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT tagaccttagggaagtcacttccagttcctgaactcatgctcctcttcagCAACTCCAGCCATTGCCTCCTGAGAGGACAGAGAAGGAGTTGCCCGCAGAGCATCAGTGTGTCAAGGACAGTCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACTGCAACTGGCCTTgtaagaatgagtcttcccaaacctgcttcctcaagctgcactgttcagag Alignment from Exonerate_protein2genome CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGC-TTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT tagaccttagggaagtcacttccagttcctgaactcatgctcctcttcagCAACTCCAGCCATTGCCTCCTGAGAGGACAGAGAAGGAGTTGCCCGCAGAGCATCAGTGTGTCAAGGACAGTCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACTGCAACTGGCCTTgtaagaatgagtcttcccaaacctgcttcctcaagctgcactgttcagag Alignment from Exonerate_coding2genome CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGC-TTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT tagaccttagggaagtcacttccagttcctgaactcatgctcctcttcagCAACTCCAGCCATTGCCTCCTGAGAGGACAGAGAAGGAGTTGCCCGCAGAGCATCAGTGTGTCAAGGACAGTCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACTGCAACTGGCCTTgtaagaatgagtcttcccaaacctgcttcctcaagctgcactgttcagag Alignment from GeneWise CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGAC-AGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT tagaccttagggaagtcacttccagttcctgaactcatgctcctcttcagCAACTCCAGCCATTGCCTCCTGAGAGGACAGAGAAGGAGTTGCCCGCAGAGCATCAGTGTGTCAAGGACAGTCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACTGCAACTGGCCTTgtaagaatgagtcttcccaaacctgcttcctcaagctgcactgttcagag #### Sec31b_ID9030_22 --> 0 - 0 Original Alignment CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCA-AGAGAATGCAGCCTGCAG acctgtggttgtctagatggttgcccctgctatttctcttgctctcatagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGACCCACAACAGGCCCTGCTATCTCAGCCCCTAGTCTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCACAGAGAATGCAGCCTGCAAgtgagtaactgtgggcccctcccctgatgcgaccgcaccaggacttgggc Alignment from CESAR CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCA-AGAGAATGCAGCCTGCAG acctgtggttgtctagatggttgcccctgctatttctcttgctctcatagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGACCCACAACAGGCCCTGCTATCTCAGCCCCTAGTCTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCACAGAGAATGCAGCCTGCAAgtgagtaactgtgggcccctcccctgatgcgaccgcaccaggacttgggc Alignment from Spaln_aa2Genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCA-AGAGAATGCAGCCTGCAG acctgtggttgtctagatggttgcccctgctatttctcttgctctcatagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGACCCACAACAGGCCCTGCTATCTCAGCCCCTAGTCTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCAcAGAGAATGCAGCCTGCAAgtgagtaactgtgggcccctcccctgatgcgaccgcaccaggacttgggc Alignment from Spaln_nt2Genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCA-AGAGAATGCAGCCTGCAG acctgtggttgtctagatggttgcccctgctatttctcttgctctcatagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGACCCACAACAGGCCCTGCTATCTCAGCCCCTAGTCTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCACAGAGAATGCAGCCTGCAAgtgagtaactgtgggcccctcccctgatgcgaccgcaccaggacttgggc Alignment from Pairagon CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCA-AGAGAATGCAGCCTGCAG acctgtggttgtctagatggttgcccctgctatttctcttgctctcatagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGACCCACAACAGGCCCTGCTATCTCAGCCCCTAGTCTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCACAGAGAATGCAGCCTGCAAgtgagtaactgtgggcccctcccctgatgcgaccgcaccaggacttgggc Alignment from Exonerate_protein2genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCA-AGAGAATGCAGCCTGCAG acctgtggttgtctagatggttgcccctgctatttctcttgctctcatagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGACCCACAACAGGCCCTGCTATCTCAGCCCCTAGTCTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCACAGAGAATGCAGCCTGCAAgtgagtaactgtgggcccctcccctgatgcgaccgcaccaggacttgggc Alignment from Exonerate_coding2genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCA-AGAGAATGCAGCCTGCAG acctgtggttgtctagatggttgcccctgctatttctcttgctctcatagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGACCCACAACAGGCCCTGCTATCTCAGCCCCTAGTCTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCACAGAGAATGCAGCCTGCAAgtgagtaactgtgggcccctcccctgatgcgaccgcaccaggacttgggc Alignment from GeneWise CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCA-AGAGAATGCAGCCTGCAG acctgtggttgtctagatggttgcccctgctatttctcttgctctcatagCTGCCTGAGGCATTCATGACTCCAGCACCAATTACAGCTCCACTTAGGAGCCTTGGGCCTGACCCACAACAGGCCCTGCTATCTCAGCCCCTAGTCTCCAGTGCAACCTTACCTCCTCCTGGAGCCCCACAGAGAATGCAGCCTGCAAgtgagtaactgtgggcccctcccctgatgcgaccgcaccaggacttgggc #### Sec31b_ID9031_21 --> 2 - 0 Original Alignment gaCCCCAGGACTCCTGG-AAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG acattgtccaggttcttaatgcctagaagctcgggggttactccctgcaggaCCCCAAGACTCGTGGCAAAGTCTCTCCTGCCTCCCAGGGAAACCTCCAAAGGAAAAAGgtaagtgcatctttccctaaccattgacccatttcatagttcaaccccac Alignment from CESAR gaCCCCAGGACTCCTGG-AAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG acattgtccaggttcttaatgcctagaagctcgggggttactccctgcaggaCCCCAAGACTCGTGGCAAAGTCTCTCCTGCCTCCCAGGGAAACCTCCAAAGGAAAAAGgtaagtgcatctttccctaaccattgacccatttcatagttcaaccccac Alignment from Spaln_aa2Genome GACCCCAGGACTCCTGG-AAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG acattgtccaggttcttaatgcctagaagctcgggggttactccctgcagGACCCCAAGACTCGTGGcAAAGTCTCTCCTGCCTCCCAGGGAAACCTCCAAAGGAAAAAGgtaagtgcatctttccctaaccattgacccatttcatagttcaaccccac Alignment from Spaln_nt2Genome GACCCCAGGACTCCTGG-AAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG acattgtccaggttcttaatgcctagaagctcgggggttactccctgcagGACCCCAAGACTCGTGGCAAAGTCTCTCCTGCCTCCCAGGGAAACCTCCAAAGGAAAAAGgtaagtgcatctttccctaaccattgacccatttcatagttcaaccccac Alignment from Pairagon GACCCCAGGACTCCTGG-AAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG acattgtccaggttcttaatgcctagaagctcgggggttactccctgcagGACCCCAAGACTCGTGGCAAAGTCTCTCCTGCCTCCCAGGGAAACCTCCAAAGGAAAAAGgtaagtgcatctttccctaaccattgacccatttcatagttcaaccccac Alignment from Exonerate_protein2genome GACCCCAGGACTCCTGG-AAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG acattgtccaggttcttaatgcctagaagctcgggggttactccctgcagGACCCCAAGACTCGTGGCAAAGTCTCTCCTGCCTCCCAGGGAAACCTCCAAAGGAAAAAGgtaagtgcatctttccctaaccattgacccatttcatagttcaaccccac Alignment from Exonerate_coding2genome GACCCCAGGACTCCTGG-AAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG acattgtccaggttcttaatgcctagaagctcgggggttactccctgcagGACCCCAAGACTCGTGGCAAAGTCTCTCCTGCCTCCCAGGGAAACCTCCAAAGGAAAAAGgtaagtgcatctttccctaaccattgacccatttcatagttcaaccccac Alignment from GeneWise GACCCCAGGACTCCTGG-AAAGTTTCTCCAGCCTCCCAGGGAAACCTCCAAAGGAAAAAG acattgtccaggttcttaatgcctagaagctcgggggttactccctgcagGACCCCAAGACTCGTGGCAAAGTCTCTCCTGCCTCCCAGGGAAACCTCCAAAGGAAAAAGgtaagtgcatctttccctaaccattgacccatttcatagttcaaccccac #### Sec31b_ID9037_15 --> 0 - 1 Original Alignment CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTA-TGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTg gagtgtgctgcacagaagcctgagggtctagctgtggctttcctttctagCTCCTAGCCTGTGTTGTAAAGAAGAACTGGAAGGACCTTGTGCTGTGCCTGTCGGCTGAAGAACTGGAGAGAGGCACTGGCCTTGCTACTAACATATTCGGGGCCAGAGAAGTTCCCTGAGCTTTGTggtgagcgtgaccccagtgtgtaccaacatactgatgcaaagtggagacag Alignment from CESAR CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTA-TGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTg gagtgtgctgcacagaagcctgagggtctagctgtggctttcctttctagCTCCTAGCCTGTGTTGTAAAGAAGAACTGGAAGGACCTTGTGCTGTGCCTGTCGGCTGAAGAACTGGAGAGAGGCACTGGCCTTGCTACTAACATATTCGGGGCCAGAGAAGTTCCCTGAGCTTTGTggtgagcgtgaccccagtgtgtaccaacatactgatgcaaagtggagacag Alignment from Spaln_aa2Genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTA-TGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG gagtgtgctgcacagaagcctgagggtctagctgtggctttcctttctagCTCCTAGCCTGTGTTGTAAAGAAGAACTGGAAGGACCTTGTGcTGTGCCTGTCGGCTGAAGAACTGGAGAGAGGCACTGGCCTTGCTACTAACATATTCGGGGCCAGAGAAGTTCCCTGAGCTTTGTGgtgagcgtgaccccagtgtgtaccaacatactgatgcaaagtggagacag Alignment from Spaln_nt2Genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTA-TGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG gagtgtgctgcacagaagcctgagggtctagctgtggctttcctttctagCTCCTAGCCTGTGTTGTAAAGAAGAACTGGAAGGACCTTGTGCTGTGCCTGTCGGCTGAAGAACTGGAGAGAGGCACTGGCCTTGCTACTAACATATTCGGGGCCAGAGAAGTTCCCTGAGCTTTGTGgtgagcgtgaccccagtgtgtaccaacatactgatgcaaagtggagacag Alignment from Pairagon CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTA-TGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG gagtgtgctgcacagaagcctgagggtctagctgtggctttcctttctagCTCCTAGCCTGTGTTGTAAAGAAGAACTGGAAGGACCTTGTGCTGTGCCTGTCGGCTGAAGAACTGGAGAGAGGCACTGGCCTTGCTACTAACATATTCGGGGCCAGAGAAGTTCCCTGAGCTTTGTGgtgagcgtgaccccagtgtgtaccaacatactgatgcaaagtggagacag Alignment from Exonerate_protein2genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTA-TGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG gagtgtgctgcacagaagcctgagggtctagctgtggctttcctttctagCTCCTAGCCTGTGTTGTAAAGAAGAACTGGAAGGACCTTGTGCTGTGCCTGTCGGCTGAAGAACTGGAGAGAGGCACTGGCCTTGCTACTAACATATTCGGGGCCAGAGAAGTTCCCTGAGCTTTGTGgtgagcgtgaccccagtgtgtaccaacatactgatgcaaagtggagacag Alignment from Exonerate_coding2genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTA-TGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG gagtgtgctgcacagaagcctgagggtctagctgtggctttcctttctagCTCCTAGCCTGTGTTGTAAAGAAGAACTGGAAGGACCTTGTGCTGTGCCTGTCGGCTGAAGAACTGGAGAGAGGCACTGGCCTTGCTACTAACATATTCGGGGCCAGAGAAGTTCCCTGAGCTTTGTGgtgagcgtgaccccagtgtgtaccaacatactgatgcaaagtggagacag Alignment from GeneWise CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTA-GTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG gagtgtgctgcacagaagcctgagggtctagctgtggctttcctttctagCTCCTAGCCTGTGTTGTAAAGAAGAACTGGAAGGACCTTGTGCTGTGCCTGTCGGCTGAAGAACTGGAGAGAGGCACTGGCCTTGCTACTAACATATTCGGGGCCAGAGAAGTTCCCTGAGCTTTGTGgtgagcgtgaccccagtgtgtaccaacatactgatgcaaagtggagacag #### Sec31b_ID9044_8 --> 0 - 0 Original Alignment GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTC-TCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtgtcccctgaggtctgttcctcagcctgtgttcttttcctcctagGTAGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGACATTCAGTGGTGCCCTCCAAGCCCTCCAGTACTCCTCTGCCGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAGgcgagtggcaattgcttgagagtgttggagggaggagctttctgcgtgag Alignment from CESAR GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTC-TCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtgtcccctgaggtctgttcctcagcctgtgttcttttcctcctagGTAGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGACATTCAGTGGTGCCCTCCAAGCCCTCCAGTACTCCTCTGCCGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAGgcgagtggcaattgcttgagagtgttggagggaggagctttctgcgtgag Alignment from Spaln_aa2Genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTC-TCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtgtcccctgaggtctgttcctcagcctgtgttcttttcctcctagGTAGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGACATTCAGTGGTGCCCTCCAAGCCCTCCAGTACTCcTCTGCCGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAGgcgagtggcaattgcttgagagtgttggagggaggagctttctgcgtgag Alignment from Spaln_nt2Genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTC-TCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtgtcccctgaggtctgttcctcagcctgtgttcttttcctcctagGTAGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGACATTCAGTGGTGCCCTCCAAGCCCTCCAGTACTCCTCTGCCGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAGgcgagtggcaattgcttgagagtgttggagggaggagctttctgcgtgag Alignment from Pairagon GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTG-TTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtgtcccctgaggtctgttcctcagcctgtgttcttttcctcctagGTAGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGACATTCAGTGGTGCCCTCCAAGCCCTCCAGTACTCCTCTGCCGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAGgcgagtggcaattgcttgagagtgttggagggaggagctttctgcgtgag Alignment from Exonerate_protein2genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTC-TCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtgtcccctgaggtctgttcctcagcctgtgttcttttcctcctagGTAGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGACATTCAGTGGTGCCCTCCAAGCCCTCCAGTACTCCTCTGCCGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAGgcgagtggcaattgcttgagagtgttggagggaggagctttctgcgtgag Alignment from Exonerate_coding2genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTC-TCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG gctggtgtcccctgaggtctgttcctcagcctgtgttcttttcctcctagGTAGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGACATTCAGTGGTGCCCTCCAAGCCCTCCAGTACTCCTCTGCCGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAGgcgagtggcaattgcttgagagtgttggagggaggagctttctgcgtgag Alignment from GeneWise GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTG-TTCTCTGCTGTCTCCTTCGATGGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAGGTG- gctggtgtcccctgaggtctgttcctcagcctgtgttcttttcctcctagGTAGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGACATTCAGTGGTGCCCTCCAAGCCCTCCAGTACTCCTCTGCCGTCTCCTTTGATGGCTGGATCAGTTTGTGTTCTGTGATGGGAAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAGGCGAgtggcaattgcttgagagtgttggagggaggagctttctgcgtgag #### Sema4g_ID9244_2 --> 2 - 0 Original Alignment agCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAG-GAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG tgggcatagaaagtattccccagctggcctgccttgtgttttaaatgcagagGTGTCCCAGGTACGACACTTCAAGGGTCAAGCCCAAAACTATTCAACCCTGCTGCTGGAGCGAGGCTTCTGAAAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCCCTCAGTGCACGTGACATCAGAGAGAGGACTCATAAAGAGgtatgtcactggtgtttggtctggcaggatctccagcttgatggggccat Alignment from CESAR agCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAG-GAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG tgggcatagaaagtattccccagctggcctgccttgtgttttaaatgcagagGTGTCCCAGGTACGACACTTCAAGGGTCAAGCCCAAAACTATTCAACCCTGCTGCTGGAGCGAGGCTTCTGAAAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCCCTCAGTGCACGTGACATCAGAGAGAGGACTCATAAAGAGgtatgtcactggtgtttggtctggcaggatctccagcttgatggggccat Alignment from Spaln_aa2Genome AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAG-GAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG tgggcatagaaagtattccccagctggcctgccttgtgttttaaatgcagAGGTGTCCCAGGTACGACACTTCAAGGGTCAAGCCCAAAACTATTCAACCCTGCTGCTGGAGcGAGGCTTCTGAAAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCCCTCAGTGCACGTGACATCAGAGAGAGGACTCATAAAGAGgtatgtcactggtgtttggtctggcaggatctccagcttgatggggccat Alignment from Spaln_nt2Genome AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAG-GAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG tgggcatagaaagtattccccagctggcctgccttgtgttttaaatgcagAGGTGTCCCAGGTACGACACTTCAAGGGTCAAGCCCAAAACTATTCAACCCTGCTGCTGGAGCGAGGCTTCTGAAAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCCCTCAGTGCACGTGACATCAGAGAGAGGACTCATAAAGAGgtatgtcactggtgtttggtctggcaggatctccagcttgatggggccat Alignment from Pairagon AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAG-GAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG tgggcatagaaagtattccccagctggcctgccttgtgttttaaatgcagAGGTGTCCCAGGTACGACACTTCAAGGGTCAAGCCCAAAACTATTCAACCCTGCTGCTGGAGCGAGGCTTCTGAAAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCCCTCAGTGCACGTGACATCAGAGAGAGGACTCATAAAGAGgtatgtcactggtgtttggtctggcaggatctccagcttgatggggccat Alignment from Exonerate_protein2genome AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAG-GAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG tgggcatagaaagtattccccagctggcctgccttgtgttttaaatgcagAGGTGTCCCAGGTACGACACTTCAAGGGTCAAGCCCAAAACTATTCAACCCTGCTGCTGGAGCGAGGCTTCTGAAAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCCCTCAGTGCACGTGACATCAGAGAGAGGACTCATAAAGAGgtatgtcactggtgtttggtctggcaggatctccagcttgatggggccat Alignment from Exonerate_coding2genome AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAG-GAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG tgggcatagaaagtattccccagctggcctgccttgtgttttaaatgcagAGGTGTCCCAGGTACGACACTTCAAGGGTCAAGCCCAAAACTATTCAACCCTGCTGCTGGAGCGAGGCTTCTGAAAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCCCTCAGTGCACGTGACATCAGAGAGAGGACTCATAAAGAGgtatgtcactggtgtttggtctggcaggatctccagcttgatggggccat Alignment from GeneWise AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAG-GAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG tgggcatagaaagtattccccagctggcctgccttgtgttttaaatgcagAGGTGTCCCAGGTACGACACTTCAAGGGTCAAGCCCAAAACTATTCAACCCTGCTGCTGGAGCGAGGCTTCTGAAAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCCCTCAGTGCACGTGACATCAGAGAGAGGACTCATAAAGAGgtatgtcactggtgtttggtctggcaggatctccagcttgatggggccat #### Sema4g_ID9248_6 --> 2 - 1 Original Alignment atGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATT-CCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATg ttttcctgatagcacatgccttatatctgcaccttcctgtgtttgtacagatGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCCTGATATTCGCCGGAGCCGTCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATggtgcagagagagttactaggaggggttgggggaggggggagtccatttct Alignment from CESAR atGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATT-CCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATg ttttcctgatagcacatgccttatatctgcaccttcctgtgtttgtacagatGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCCTGATATTCGCCGGAGCCGTCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATggtgcagagagagttactaggaggggttgggggaggggggagtccatttct Alignment from Spaln_aa2Genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATT-CCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctgatagcacatgccttatatctgcaccttcctgtgtttgtacagATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTcCCTGATATTCGCCGGAGCCGTCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATGgtgcagagagagttactaggaggggttgggggaggggggagtccatttct Alignment from Spaln_nt2Genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATT-CCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctgatagcacatgccttatatctgcaccttcctgtgtttgtacagATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCCTGATATTCGCCGGAGCCGTCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATGgtgcagagagagttactaggaggggttgggggaggggggagtccatttct Alignment from Pairagon ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATT-CCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctgatagcacatgccttatatctgcaccttcctgtgtttgtacagATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCCTGATATTCGCCGGAGCCGTCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATGgtgcagagagagttactaggaggggttgggggaggggggagtccatttct Alignment from Exonerate_protein2genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATT-CCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctgatagcacatgccttatatctgcaccttcctgtgtttgtacagATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCCTGATATTCGCCGGAGCCGTCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATGgtgcagagagagttactaggaggggttgggggaggggggagtccatttct Alignment from Exonerate_coding2genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATT-CCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctgatagcacatgccttatatctgcaccttcctgtgtttgtacagATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCCTGATATTCGCCGGAGCCGTCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATGgtgcagagagagttactaggaggggttgggggaggggggagtccatttct Alignment from GeneWise ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGC-ATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctgatagcacatgccttatatctgcaccttcctgtgtttgtacagATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCCTGATATTCGCCGGAGCCGTCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATGgtgcagagagagttactaggaggggttgggggaggggggagtccatttct #### Sema4g_ID9250_8 --> 0 - 2 Original Alignment GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCT-CGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGtg aaaaggaaaggccagacctctgacctgaacccctcttcttcccattccagGGAGATCTGGGTGGGAAAAAGATCCTGCAGAAGAAGTGGACATCCTTCCTGAAGGCTCCGACTCATCTGCCATGTCCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTAAATGCCGACACATCATCCCACACACATTTCTATGCCGTCTTTATGCTGACAACACAGtggtaagtacaggagacgtgagcacagatgttgggggaagggaaaggaacag Alignment from CESAR GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCT-CGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGtg aaaaggaaaggccagacctctgacctgaacccctcttcttcccattccagGGAGATCTGGGTGGGAAAAAGATCCTGCAGAAGAAGTGGACATCCTTCCTGAAGGCTCCGACTCATCTGCCATGTCCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTAAATGCCGACACATCATCCCACACACATTTCTATGCCGTCTTTATGCTGACAACACAGtggtaagtacaggagacgtgagcacagatgttgggggaagggaaaggaacag Alignment from Spaln_aa2Genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCT-CGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aaaaggaaaggccagacctctgacctgaacccctcttcttcccattccagGGAGATCTGGGTGGGAAAAAGATCCTGCAGAAGAAGTGGACATCCTTCCTGAAGGCTcCGACTCATCTGCCATGTCCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTAAATGCCGACACATCATCCCACACACATTTCTATGCCGTCTTTATGCTGACAACACAGTGgtaagtacaggagacgtgagcacagatgttgggggaagggaaaggaacag Alignment from Spaln_nt2Genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCT-CGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aaaaggaaaggccagacctctgacctgaacccctcttcttcccattccagGGAGATCTGGGTGGGAAAAAGATCCTGCAGAAGAAGTGGACATCCTTCCTGAAGGCTCCGACTCATCTGCCATGTCCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTAAATGCCGACACATCATCCCACACACATTTCTATGCCGTCTTTATGCTGACAACACAGTGgtaagtacaggagacgtgagcacagatgttgggggaagggaaaggaacag Alignment from Pairagon GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCT-CGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aaaaggaaaggccagacctctgacctgaacccctcttcttcccattccagGGAGATCTGGGTGGGAAAAAGATCCTGCAGAAGAAGTGGACATCCTTCCTGAAGGCTCCGACTCATCTGCCATGTCCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTAAATGCCGACACATCATCCCACACACATTTCTATGCCGTCTTTATGCTGACAACACAGTGgtaagtacaggagacgtgagcacagatgttgggggaagggaaaggaacag Alignment from Exonerate_protein2genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCT-CGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aaaaggaaaggccagacctctgacctgaacccctcttcttcccattccagGGAGATCTGGGTGGGAAAAAGATCCTGCAGAAGAAGTGGACATCCTTCCTGAAGGCTCCGACTCATCTGCCATGTCCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTAAATGCCGACACATCATCCCACACACATTTCTATGCCGTCTTTATGCTGACAACACAGTGgtaagtacaggagacgtgagcacagatgttgggggaagggaaaggaacag Alignment from Exonerate_coding2genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCT-CGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aaaaggaaaggccagacctctgacctgaacccctcttcttcccattccagGGAGATCTGGGTGGGAAAAAGATCCTGCAGAAGAAGTGGACATCCTTCCTGAAGGCTCCGACTCATCTGCCATGTCCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTAAATGCCGACACATCATCCCACACACATTTCTATGCCGTCTTTATGCTGACAACACAGTGgtaagtacaggagacgtgagcacagatgttgggggaagggaaaggaacag Alignment from GeneWise GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAG-GCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aaaaggaaaggccagacctctgacctgaacccctcttcttcccattccagGGAGATCTGGGTGGGAAAAAGATCCTGCAGAAGAAGTGGACATCCTTCCTGAAGGCTCCGACTCATCTGCCATGTCCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTAAATGCCGACACATCATCCCACACACATTTCTATGCCGTCTTTATGCTGACAACACAGTGgtaagtacaggagacgtgagcacagatgttgggggaagggaaaggaacag #### Sema4g_ID9251_9 --> 1 - 0 Original Alignment gAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATG-GAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggcctggggcaggctccattcaatcgtctgagtgccctttgtttcaggAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGCGAGTACCAAGATGGTGCCCGGCGTTGGGGCCGCTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTCGgtgtgcactcaggcctggactttacattgattggacaaagggcaggggta Alignment from CESAR gAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATG-GAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggcctggggcaggctccattcaatcgtctgagtgccctttgtttcaggAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGCGAGTACCAAGATGGTGCCCGGCGTTGGGGCCGCTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTCGgtgtgcactcaggcctggactttacattgattggacaaagggcaggggta Alignment from Spaln_aa2Genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATG-GAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggcctggggcaggctccattcaatcgtctgagtgccctttgtttcagGAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGcGAGTACCAAGATGGTGCCCGGCGTTGGGGCCGCTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTCGgtgtgcactcaggcctggactttacattgattggacaaagggcaggggta Alignment from Spaln_nt2Genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATG-GAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggcctggggcaggctccattcaatcgtctgagtgccctttgtttcagGAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGCGAGTACCAAGATGGTGCCCGGCGTTGGGGCCGCTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTCGgtgtgcactcaggcctggactttacattgattggacaaagggcaggggta Alignment from Pairagon GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATG-GAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggcctggggcaggctccattcaatcgtctgagtgccctttgtttcagGAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGCGAGTACCAAGATGGTGCCCGGCGTTGGGGCCGCTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTCGgtgtgcactcaggcctggactttacattgattggacaaagggcaggggta Alignment from Exonerate_protein2genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATG-GAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggcctggggcaggctccattcaatcgtctgagtgccctttgtttcagGAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGCGAGTACCAAGATGGTGCCCGGCGTTGGGGCCGCTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTCGgtgtgcactcaggcctggactttacattgattggacaaagggcaggggta Alignment from Exonerate_coding2genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATG-GAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggcctggggcaggctccattcaatcgtctgagtgccctttgtttcagGAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGCGAGTACCAAGATGGTGCCCGGCGTTGGGGCCGCTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTCGgtgtgcactcaggcctggactttacattgattggacaaagggcaggggta Alignment from GeneWise GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATG-GAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggcctggggcaggctccattcaatcgtctgagtgccctttgtttcagGAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGCGAGTACCAAGATGGTGCCCGGCGTTGGGGCCGCTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTCGgtgtgcactcaggcctggactttacattgattggacaaagggcaggggta #### Sema4g_ID9252_10 --> 0 - 1 Original Alignment TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTG-CCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAg caggtggcaaacagtgtctgcagagtctcccaccttttgatatcttttagTGTATCACCGATTCATTGCGCAGCCAAGGGTACAACTCATCCCAAGACTTGCCCATCCCTTGTCCTAGACTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTGGTGCCCACACGTGGGCAGCCCTTGCTCCTGAAGCGCAATGTACGTTACACACATGTCACAGGAACACACGTCAGTACACCTGCCGGACCTACCTATGAGCTGCTCTTTCTAGGCACAggtaagacagactccatcctgatccttgactggcctccacatcagctagaa Alignment from CESAR TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTG-CCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAg caggtggcaaacagtgtctgcagagtctcccaccttttgatatcttttagTGTATCACCGATTCATTGCGCAGCCAAGGGTACAACTCATCCCAAGACTTGCCCATCCCTTGTCCTAGACTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTGGTGCCCACACGTGGGCAGCCCTTGCTCCTGAAGCGCAATGTACGTTACACACATGTCACAGGAACACACGTCAGTACACCTGCCGGACCTACCTATGAGCTGCTCTTTCTAGGCACAggtaagacagactccatcctgatccttgactggcctccacatcagctagaa Alignment from Spaln_aa2Genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTG-CCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG caggtggcaaacagtgtctgcagagtctcccaccttttgatatcttttagTGTATCACCGATTCATTGCGCAGCCAAGGGTACAACTCATCCCAAGACTTGcCCATCCCTTGTCCTAGACTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTGGTGCCCACACGTGGGCAGCCCTTGCTCCTGAAGCGCAATGTACGTTACACACATGTCACAGGAACACACGTCAGTACACCTGCCGGACCTACCTATGAGCTGCTCTTTCTAGGCACAGgtaagacagactccatcctgatccttgactggcctccacatcagctagaa Alignment from Spaln_nt2Genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTG-CCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG caggtggcaaacagtgtctgcagagtctcccaccttttgatatcttttagTGTATCACCGATTCATTGCGCAGCCAAGGGTACAACTCATCCCAAGACTTGCCCATCCCTTGTCCTAGACTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTGGTGCCCACACGTGGGCAGCCCTTGCTCCTGAAGCGCAATGTACGTTACACACATGTCACAGGAACACACGTCAGTACACCTGCCGGACCTACCTATGAGCTGCTCTTTCTAGGCACAGgtaagacagactccatcctgatccttgactggcctccacatcagctagaa Alignment from Pairagon TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTG-CCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG caggtggcaaacagtgtctgcagagtctcccaccttttgatatcttttagTGTATCACCGATTCATTGCGCAGCCAAGGGTACAACTCATCCCAAGACTTGCCCATCCCTTGTCCTAGACTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTGGTGCCCACACGTGGGCAGCCCTTGCTCCTGAAGCGCAATGTACGTTACACACATGTCACAGGAACACACGTCAGTACACCTGCCGGACCTACCTATGAGCTGCTCTTTCTAGGCACAGgtaagacagactccatcctgatccttgactggcctccacatcagctagaa Alignment from Exonerate_protein2genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTG-CCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG caggtggcaaacagtgtctgcagagtctcccaccttttgatatcttttagTGTATCACCGATTCATTGCGCAGCCAAGGGTACAACTCATCCCAAGACTTGCCCATCCCTTGTCCTAGACTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTGGTGCCCACACGTGGGCAGCCCTTGCTCCTGAAGCGCAATGTACGTTACACACATGTCACAGGAACACACGTCAGTACACCTGCCGGACCTACCTATGAGCTGCTCTTTCTAGGCACAGgtaagacagactccatcctgatccttgactggcctccacatcagctagaa Alignment from Exonerate_coding2genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTG-CCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG caggtggcaaacagtgtctgcagagtctcccaccttttgatatcttttagTGTATCACCGATTCATTGCGCAGCCAAGGGTACAACTCATCCCAAGACTTGCCCATCCCTTGTCCTAGACTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTGGTGCCCACACGTGGGCAGCCCTTGCTCCTGAAGCGCAATGTACGTTACACACATGTCACAGGAACACACGTCAGTACACCTGCCGGACCTACCTATGAGCTGCTCTTTCTAGGCACAGgtaagacagactccatcctgatccttgactggcctccacatcagctagaa Alignment from GeneWise TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCA-TCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG caggtggcaaacagtgtctgcagagtctcccaccttttgatatcttttagTGTATCACCGATTCATTGCGCAGCCAAGGGTACAACTCATCCCAAGACTTGCCCATCCCTTGTCCTAGACTTTGTGAAGTTGCATCCCCTGATGGCTCAGCCTGTGGTGCCCACACGTGGGCAGCCCTTGCTCCTGAAGCGCAATGTACGTTACACACATGTCACAGGAACACACGTCAGTACACCTGCCGGACCTACCTATGAGCTGCTCTTTCTAGGCACAGgtaagacagactccatcctgatccttgactggcctccacatcagctagaa #### Sf1_ID1664_5 --> 1 - 2 Original Alignment gCCTCCAGCAACACGTGTGAGCGATAAAGTAATG-ATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCag tatgcatgtaaccttccaaaaatagatgactgttgttactgtgtctgtagaCCTCCAGCAACACGTGTGAGTGATAAAGTGATGCATACCACAATATGAATATCCAGAAATCAATTTTGTGGGCCTCCTAATTGGACCCaggtaagaaattagtagtctatggcacccaggttttaattgtagttgaagct Alignment from CESAR gCCTCCAGCAACACGTGTGAGCGATAAAGTAATG-ATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCag tatgcatgtaaccttccaaaaatagatgactgttgttactgtgtctgtagaCCTCCAGCAACACGTGTGAGTGATAAAGTGATGCATACCACAATATGAATATCCAGAAATCAATTTTGTGGGCCTCCTAATTGGACCCaggtaagaaattagtagtctatggcacccaggttttaattgtagttgaagct Alignment from Spaln_aa2Genome GCCTCCAGCAACACGTGTGAGCGATAAAGTAATG-ATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG tatgcatgtaaccttccaaaaatagatgactgttgttactgtgtctgtagACCTCCAGCAACACGTGTGAGTGATAAAGTGATGcATACCACAATATGAATATCCAGAAATCAATTTTGTGGGCCTCCTAATTGGACCCAGgtaagaaattagtagtctatggcacccaggttttaattgtagttgaagct Alignment from Spaln_nt2Genome GCCTCCAGCAACACGTGTGAGCGATAAAGTAATG-ATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG tatgcatgtaaccttccaaaaatagatgactgttgttactgtgtctgtagACCTCCAGCAACACGTGTGAGTGATAAAGTGATGCATACCACAATATGAATATCCAGAAATCAATTTTGTGGGCCTCCTAATTGGACCCAGgtaagaaattagtagtctatggcacccaggttttaattgtagttgaagct Alignment from Pairagon GCCTCCAGCAACACGTGTGAGCGATAAAGTAATG-ATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG tatgcatgtaaccttccaaaaatagatgactgttgttactgtgtctgtagACCTCCAGCAACACGTGTGAGTGATAAAGTGATGCATACCACAATATGAATATCCAGAAATCAATTTTGTGGGCCTCCTAATTGGACCCAGgtaagaaattagtagtctatggcacccaggttttaattgtagttgaagct Alignment from Exonerate_protein2genome GCCTCCAGCAACACGTGTGAGCGATAAAGTAATG-ATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG tatgcatgtaaccttccaaaaatagatgactgttgttactgtgtctgtagACCTCCAGCAACACGTGTGAGTGATAAAGTGATGCATACCACAATATGAATATCCAGAAATCAATTTTGTGGGCCTCCTAATTGGACCCAGgtaagaaattagtagtctatggcacccaggttttaattgtagttgaagct Alignment from Exonerate_coding2genome GCCTCCAGCAACACGTGTGAGCGATAAAGTAATG-ATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG tatgcatgtaaccttccaaaaatagatgactgttgttactgtgtctgtagACCTCCAGCAACACGTGTGAGTGATAAAGTGATGCATACCACAATATGAATATCCAGAAATCAATTTTGTGGGCCTCCTAATTGGACCCAGgtaagaaattagtagtctatggcacccaggttttaattgtagttgaagct Alignment from GeneWise GCCTCCAGCAACACGTGTGAGCGATAAAGTAATG-ATCCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG tatgcatgtaaccttccaaaaatagatgactgttgttactgtgtctgtagACCTCCAGCAACACGTGTGAGTGATAAAGTGATGCATACCACAATATGAATATCCAGAAATCAATTTTGTGGGCCTCCTAATTGGACCCAGgtaagaaattagtagtctatggcacccaggttttaattgtagttgaagct #### Sf1_ID1666_7 --> 0 - 2 Original Alignment ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGG-GAAGATGATAATag caaactggcctgaagttctttgacaagtctgttgtcacttttctctttagATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCGGAAGACCAGAATGATCTACAGAAAATGCAGCTTCGAGAGTTGGCTCGCCTGAATGGCACTCTACGGCGAAGATGACAACcggtgagtggaatgttgagaaaaatgcatagaaaatttgaattttgttgaag Alignment from CESAR ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGG-GAAGATGATAATag caaactggcctgaagttctttgacaagtctgttgtcacttttctctttagATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCGGAAGACCAGAATGATCTACAGAAAATGCAGCTTCGAGAGTTGGCTCGCCTGAATGGCACTCTACGGCGAAGATGACAACcggtgagtggaatgttgagaaaaatgcatagaaaatttgaattttgttgaag Alignment from Spaln_aa2Genome ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGG-GAAGATGATAATAG caaactggcctgaagttctttgacaagtctgttgtcacttttctctttagATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCGGAAGACCAGAATGATCTACAGAAAATGCAGCTTCGAGAGTTGGCTCGCCTGAATGGCACTCTACGGcGAAGATGACAACCGgtgagtggaatgttgagaaaaatgcatagaaaatttgaattttgttgaag Alignment from Spaln_nt2Genome ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGG-GAAGATGATAATAG caaactggcctgaagttctttgacaagtctgttgtcacttttctctttagATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCGGAAGACCAGAATGATCTACAGAAAATGCAGCTTCGAGAGTTGGCTCGCCTGAATGGCACTCTACGGCGAAGATGACAACCGgtgagtggaatgttgagaaaaatgcatagaaaatttgaattttgttgaag Alignment from Pairagon ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGG-GAAGATGATAATAG caaactggcctgaagttctttgacaagtctgttgtcacttttctctttagATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCGGAAGACCAGAATGATCTACAGAAAATGCAGCTTCGAGAGTTGGCTCGCCTGAATGGCACTCTACGGCGAAGATGACAACCGgtgagtggaatgttgagaaaaatgcatagaaaatttgaattttgttgaag Alignment from Exonerate_protein2genome ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGG-GAAGATGATAATAG caaactggcctgaagttctttgacaagtctgttgtcacttttctctttagATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCGGAAGACCAGAATGATCTACAGAAAATGCAGCTTCGAGAGTTGGCTCGCCTGAATGGCACTCTACGGCGAAGATGACAACCGgtgagtggaatgttgagaaaaatgcatagaaaatttgaattttgttgaag Alignment from Exonerate_coding2genome ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGG-GAAGATGATAATAG caaactggcctgaagttctttgacaagtctgttgtcacttttctctttagATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCGGAAGACCAGAATGATCTACAGAAAATGCAGCTTCGAGAGTTGGCTCGCCTGAATGGCACTCTACGGCGAAGATGACAACCGgtgagtggaatgttgagaaaaatgcatagaaaatttgaattttgttgaag Alignment from GeneWise ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGG-GAAGATGATAATAG caaactggcctgaagttctttgacaagtctgttgtcacttttctctttagATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCGGAAGACCAGAATGATCTACAGAAAATGCAGCTTCGAGAGTTGGCTCGCCTGAATGGCACTCTACGGCGAAGATGACAACCGgtgagtggaatgttgagaaaaatgcatagaaaatttgaattttgttgaag #### Sf1_ID1669_10 --> 0 - 1 Original Alignment TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGC-TTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGg tgtctgtgggggcaccagtgtggacattgacttcttggtctgctctgtagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCCTTCCCACACCCATTACCCAGTCTGACAGGCGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGggtatgaaagggttagaccaaaaaacccatggggcttgggagggggggtag Alignment from CESAR TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGC-TTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGg tgtctgtgggggcaccagtgtggacattgacttcttggtctgctctgtagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCCTTCCCACACCCATTACCCAGTCTGACAGGCGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGggtatgaaagggttagaccaaaaaacccatggggcttgggagggggggtag Alignment from Spaln_aa2Genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCA-TTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG tgtctgtgggggcaccagtgtggacattgacttcttggtctgctctgtagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCCTTCCCACACCCaTTACCCAGTCTGACAGGCGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtatgaaagggttagaccaaaaaacccatggggcttgggagggggggtag Alignment from Spaln_nt2Genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAG-CTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG tgtctgtgggggcaccagtgtggacattgacttcttggtctgctctgtagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCCTTCCCACACCCATTACCCAGTCTGACAGGCGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtatgaaagggttagaccaaaaaacccatggggcttgggagggggggtag Alignment from Pairagon TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAG-CTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG tgtctgtgggggcaccagtgtggacattgacttcttggtctgctctgtagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCCTTCCCACACCCATTACCCAGTCTGACAGGCGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtatgaaagggttagaccaaaaaacccatggggcttgggagggggggtag Alignment from Exonerate_protein2genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGC-TTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG tgtctgtgggggcaccagtgtggacattgacttcttggtctgctctgtagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCCTTCCCACACCCATTACCCAGTCTGACAGGCGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtatgaaagggttagaccaaaaaacccatggggcttgggagggggggtag Alignment from Exonerate_coding2genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGC-TTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG tgtctgtgggggcaccagtgtggacattgacttcttggtctgctctgtagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCCTTCCCACACCCATTACCCAGTCTGACAGGCGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtatgaaagggttagaccaaaaaacccatggggcttgggagggggggtag Alignment from GeneWise TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCAC-AGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG tgtctgtgggggcaccagtgtggacattgacttcttggtctgctctgtagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCCTTCCCACACCCATTACCCAGTCTGACAGGCGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtatgaaagggttagaccaaaaaacccatggggcttgggagggggggtag #### Sf3b2_ID907_11 --> 0 - 0 Original Alignment GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAG-TTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG agtttgggtgctgcctgatgccacctaattaaatcttgtgtttcctacagAAAAAGAAGCCAGAAGCCCCTAAACTGTCAAGGAAGAAGCTTGCGCCGAATGAATCGGTTTACTGTGGCAGAGCTCAAGCAGgtgggatctgggatggccaagtcagttctgcagtattgctgggaatccac Alignment from CESAR GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAG-TTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG agtttgggtgctgcctgatgccacctaattaaatcttgtgtttcctacagAAAAAGAAGCCAGAAGCCCCTAAACTGTCAAGGAAGAAGCTTGCGCCGAATGAATCGGTTTACTGTGGCAGAGCTCAAGCAGgtgggatctgggatggccaagtcagttctgcagtattgctgggaatccac Alignment from Spaln_aa2Genome GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAG-TTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG agtttgggtgctgcctgatgccacctaattaaatcttgtgtttcctacagAAAAAGAAGCCAGAAGCCCCTAAACTGTCAAGGAAGAAGcTTGCGCCGAATGAATCGGTTTACTGTGGCAGAGCTCAAGCAGgtgggatctgggatggccaagtcagttctgcagtattgctgggaatccac Alignment from Spaln_nt2Genome GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAG-TTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG agtttgggtgctgcctgatgccacctaattaaatcttgtgtttcctacagAAAAAGAAGCCAGAAGCCCCTAAACTGTCAAGGAAGAAGCTTGCGCCGAATGAATCGGTTTACTGTGGCAGAGCTCAAGCAGgtgggatctgggatggccaagtcagttctgcagtattgctgggaatccac Alignment from Pairagon GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAG-TTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG agtttgggtgctgcctgatgccacctaattaaatcttgtgtttcctacagAAAAAGAAGCCAGAAGCCCCTAAACTGTCAAGGAAGAAGCTTGCGCCGAATGAATCGGTTTACTGTGGCAGAGCTCAAGCAGgtgggatctgggatggccaagtcagttctgcagtattgctgggaatccac Alignment from Exonerate_protein2genome GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAG-TTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG agtttgggtgctgcctgatgccacctaattaaatcttgtgtttcctacagAAAAAGAAGCCAGAAGCCCCTAAACTGTCAAGGAAGAAGCTTGCGCCGAATGAATCGGTTTACTGTGGCAGAGCTCAAGCAGgtgggatctgggatggccaagtcagttctgcagtattgctgggaatccac Alignment from Exonerate_coding2genome GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAG-TTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG agtttgggtgctgcctgatgccacctaattaaatcttgtgtttcctacagAAAAAGAAGCCAGAAGCCCCTAAACTGTCAAGGAAGAAGCTTGCGCCGAATGAATCGGTTTACTGTGGCAGAGCTCAAGCAGgtgggatctgggatggccaagtcagttctgcagtattgctgggaatccac Alignment from GeneWise GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAG-TTGCGCCGAATGAATCGTTTTACTGTGGCAGAACTCAAGCAG agtttgggtgctgcctgatgccacctaattaaatcttgtgtttcctacagAAAAAGAAGCCAGAAGCCCCTAAACTGTCAAGGAAGAAGCTTGCGCCGAATGAATCGGTTTACTGTGGCAGAGCTCAAGCAGgtgggatctgggatggccaagtcagttctgcagtattgctgggaatccac #### Sf3b2_ID908_10 --> 0 - 0 Original Alignment CTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAGAGCTCTGCAGTCCCCAAGAAGAAG-GGCTTTGAGGAGGAGCACAAGGACAGTGACGATGACAGCAGTGATGATGAGCAG aggggggcatggggacacagtcccagaggatgattttatttgtactacagCTAACTGATGATGTGAGGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAAAGCTCTGCAGTCCCCAAGAAAAAGCGGCTTTGAGGAGGAGCATAAAGACAGTGATGATGACAGCAGTGATGATGAGCAGgtgagcacccctatgtgggagtgagatgcagggcctggggagatggtgtg Alignment from CESAR CTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAGAGCTCTGCAGTCCCCAAGAAGAAG-GGCTTTGAGGAGGAGCACAAGGACAGTGACGATGACAGCAGTGATGATGAGCAG aggggggcatggggacacagtcccagaggatgattttatttgtactacagCTAACTGATGATGTGAGGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAAAGCTCTGCAGTCCCCAAGAAAAAGCGGCTTTGAGGAGGAGCATAAAGACAGTGATGATGACAGCAGTGATGATGAGCAGgtgagcacccctatgtgggagtgagatgcagggcctggggagatggtgtg Alignment from Spaln_aa2Genome CTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAGAGCTCTGCAGTC-CCCAAGAAGAAGGGCTTTGAGGAGGAGCACAAGGACAGTGACGATGACAGCAGTGATGATGAGCAG aggggggcatggggacacagtcccagaggatgattttatttgtactacagCTAACTGATGATGTGAGGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAAAGCTCTGCAGTCcCCAAGAAAAAGCGGCTTTGAGGAGGAGCATAAAGACAGTGATGATGACAGCAGTGATGATGAGCAGgtgagcacccctatgtgggagtgagatgcagggcctggggagatggtgtg Alignment from Spaln_nt2Genome CTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAGAGCTCTGCAGTCCCCAAGAAGAAG-GGCTTTGAGGAGGAGCACAAGGACAGTGACGATGACAGCAGTGATGATGAGCAG aggggggcatggggacacagtcccagaggatgattttatttgtactacagCTAACTGATGATGTGAGGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAAAGCTCTGCAGTCCCCAAGAAAAAGCGGCTTTGAGGAGGAGCATAAAGACAGTGATGATGACAGCAGTGATGATGAGCAGgtgagcacccctatgtgggagtgagatgcagggcctggggagatggtgtg Alignment from Pairagon CTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAGAGCTCTGCAGTCCCCAAGAAGAAG-GGCTTTGAGGAGGAGCACAAGGACAGTGACGATGACAGCAGTGATGATGAGCAG aggggggcatggggacacagtcccagaggatgattttatttgtactacagCTAACTGATGATGTGAGGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAAAGCTCTGCAGTCCCCAAGAAAAAGCGGCTTTGAGGAGGAGCATAAAGACAGTGATGATGACAGCAGTGATGATGAGCAGgtgagcacccctatgtgggagtgagatgcagggcctggggagatggtgtg Alignment from Exonerate_protein2genome CTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAGAGCTCTGCAGTCCCCAAGAAGAAG-GGCTTTGAGGAGGAGCACAAGGACAGTGACGATGACAGCAGTGATGATGAGCAG aggggggcatggggacacagtcccagaggatgattttatttgtactacagCTAACTGATGATGTGAGGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAAAGCTCTGCAGTCCCCAAGAAAAAGCGGCTTTGAGGAGGAGCATAAAGACAGTGATGATGACAGCAGTGATGATGAGCAGgtgagcacccctatgtgggagtgagatgcagggcctggggagatggtgtg Alignment from Exonerate_coding2genome CTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAGAGCTCTGCAGTCCCCAAGAAGAAG-GGCTTTGAGGAGGAGCACAAGGACAGTGACGATGACAGCAGTGATGATGAGCAG aggggggcatggggacacagtcccagaggatgattttatttgtactacagCTAACTGATGATGTGAGGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAAAGCTCTGCAGTCCCCAAGAAAAAGCGGCTTTGAGGAGGAGCATAAAGACAGTGATGATGACAGCAGTGATGATGAGCAGgtgagcacccctatgtgggagtgagatgcagggcctggggagatggtgtg Alignment from GeneWise CTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAGAGCTCTGCAGTCCCCAAGAAG-AAGGGCTTTGAGGAGGAGCACAAGGACAGTGACGATGACAGCAGTGATGATGAGCAG aggggggcatggggacacagtcccagaggatgattttatttgtactacagCTAACTGATGATGTGAGGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAAAGCTCTGCAGTCCCCAAGAAAAAGCGGCTTTGAGGAGGAGCATAAAGACAGTGATGATGACAGCAGTGATGATGAGCAGgtgagcacccctatgtgggagtgagatgcagggcctggggagatggtgtg #### Sf3b2_ID909_9 --> 0 - 0 Original Alignment AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAG-GACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG agttgtgggatgaggatcctctgacttatgtgcctgtcctgcccctgcagAAAAACCGAAAGCGTCAGAACCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGGCAGCCTCATCAGAGAGTTCCGGGGACCGAGAAAAGCGACTCTGGTCGGTCCCGAGGCTCAGACCCCCCTACAGGT---GTAGAGATTGAGTATGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATATTTGAGGCTTTCAAGgtgagtagggtcatgtgctctgaggacctaccttgctgaggggggcatgg Alignment from CESAR AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAG-GACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG agttgtgggatgaggatcctctgacttatgtgcctgtcctgcccctgcagAAAAACCGAAAGCGTCAGAACCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGGCAGCCTCATCAGAGAGTTCCGGGGACCGAGAAAAGCGACTCTGGTCGGTCCCGAGGCTCAGACCCCCCTACAGGT---GTAGAGATTGAGTATGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATATTTGAGGCTTTCAAGgtgagtagggtcatgtgctctgaggacctaccttgctgaggggggcatgg Alignment from Spaln_aa2Genome AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAG-GACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG agttgtgggatgaggatcctctgacttatgtgcctgtcctgcccctgcagAAAAACCGAAAGCGTCAGAACCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGGCAGCCTCATCAGAGAGTTCCGGGGACCGAGAAAAGcGACTCTGGTCGGTCCCGAGGCTCAGACCCCCCTACAGGT---GTAGAGATTGAGTATGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATATTTGAGGCTTTCAAGgtgagtagggtcatgtgctctgaggacctaccttgctgaggggggcatgg Alignment from Spaln_nt2Genome AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAG-GACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG agttgtgggatgaggatcctctgacttatgtgcctgtcctgcccctgcagAAAAACCGAAAGCGTCAGAACCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGGCAGCCTCATCAGAGAGTTCCGGGGACCGAGAAAAGCGACTCTGGTCGGTCCCGAGGCTCAGACCCCCCTACAGGT---GTAGAGATTGAGTATGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATATTTGAGGCTTTCAAGgtgagtagggtcatgtgctctgaggacctaccttgctgaggggggcatgg Alignment from Pairagon AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAG-GACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG agttgtgggatgaggatcctctgacttatgtgcctgtcctgcccctgcagAAAAACCGAAAGCGTCAGAACCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGGCAGCCTCATCAGAGAGTTCCGGGGACCGAGAAAAGCGACTCTGGTCGGTCCCGAGGCTCAGACCCCCCTACAGGT---GTAGAGATTGAGTATGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATATTTGAGGCTTTCAAGgtgagtagggtcatgtgctctgaggacctaccttgctgaggggggcatgg Alignment from Exonerate_protein2genome AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAG-GACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG agttgtgggatgaggatcctctgacttatgtgcctgtcctgcccctgcagAAAAACCGAAAGCGTCAGAACCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGGCAGCCTCATCAGAGAGTTCCGGGGACCGAGAAAAGCGACTCTGGTCGGTCCCGAGGCTCAGACCCCCCTACAGGT---GTAGAGATTGAGTATGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATATTTGAGGCTTTCAAGgtgagtagggtcatgtgctctgaggacctaccttgctgaggggggcatgg Alignment from Exonerate_coding2genome AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAG-GACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG agttgtgggatgaggatcctctgacttatgtgcctgtcctgcccctgcagAAAAACCGAAAGCGTCAGAACCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGGCAGCCTCATCAGAGAGTTCCGGGGACCGAGAAAAGCGACTCTGGTCGGTCCCGAGGCTCAGACCCCCCTACAGGT---GTAGAGATTGAGTATGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATATTTGAGGCTTTCAAGgtgagtagggtcatgtgctctgaggacctaccttgctgaggggggcatgg Alignment from GeneWise AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAG-AAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG agttgtgggatgaggatcctctgacttatgtgcctgtcctgcccctgcagAAAAACCGAAAGCGTCAGAACCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGGCAGCCTCATCAGAGAGTTCCGGGGACCGAGAAAAGCGACTCTGGTCGGTCCCGAGGCTCAGACCCCCCTACAGGT---GTAGAGATTGAGTATGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATATTTGAGGCTTTCAAGgtgagtagggtcatgtgctctgaggacctaccttgctgaggggggcatgg #### Sf3b2_ID910_8 --> 2 - 0 Original Alignment agGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAG-GACACGGTGTCCATATCCAAAAAAGAG atgaagtttttacagttaggagagttggctatgttctgtgttttcaacagagAAGGAGGAAATGGAGACAGTTACTCGCTCATCTCTAGGACAGTCCGCATCAGAGACTGAGGAGCGACACAGTGTCCATATCCAAAAAAGAGgtagtggtctagtaggagcatgccacttttctgtgagtttcttggctatc Alignment from CESAR agGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAG-GACACGGTGTCCATATCCAAAAAAGAG atgaagtttttacagttaggagagttggctatgttctgtgttttcaacagagAAGGAGGAAATGGAGACAGTTACTCGCTCATCTCTAGGACAGTCCGCATCAGAGACTGAGGAGCGACACAGTGTCCATATCCAAAAAAGAGgtagtggtctagtaggagcatgccacttttctgtgagtttcttggctatc Alignment from Spaln_aa2Genome CAGGAGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAG-GACACGGTGTCCATATCCAAAAAAGAG aagtttttacagttaggagagttggctatgttctgtgttttcaaca gAGAAGGAGGAAATGGAGACAGTTACTCGCTCATCTCTAGGACAGTCCGCATCAGAGACTGAGGAGcGACACAGTGTCCATATCCAAAAAAGAGgtagtggtctagtaggagcatgccacttttctgtgagtttcttggctatc Alignment from Spaln_nt2Genome AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAG-GACACGGTGTCCATATCCAAAAAAGAG atgaagtttttacagttaggagagttggctatgttctgtgttttcaacagAGAAGGAGGAAATGGAGACAGTTACTCGCTCATCTCTAGGACAGTCCGCATCAGAGACTGAGGAGCGACACAGTGTCCATATCCAAAAAAGAGgtagtggtctagtaggagcatgccacttttctgtgagtttcttggctatc Alignment from Pairagon AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAG-GACACGGTGTCCATATCCAAAAAAGAG atgaagtttttacagttaggagagttggctatgttctgtgttttcaacagAGAAGGAGGAAATGGAGACAGTTACTCGCTCATCTCTAGGACAGTCCGCATCAGAGACTGAGGAGCGACACAGTGTCCATATCCAAAAAAGAGgtagtggtctagtaggagcatgccacttttctgtgagtttcttggctatc Alignment from Exonerate_protein2genome AGGAGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAG-GACACGGTGTCCATATCCAAAAAAGAG atgaagtttttacagttaggagagttggctatgttctgtgttttcaaCAGAGAAGGAGGAAATGGAGACAGTTACTCGCTCATCTCTAGGACAGTCCGCATCAGAGACTGAGGAGCGACACAGTGTCCATATCCAAAAAAGAGgtagtggtctagtaggagcatgccacttttctgtgagtttcttggctatc Alignment from Exonerate_coding2genome AGGAGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAG-GACACGGTGTCCATATCCAAAAAAGAG atgaagtttttacagttaggagagttggctatgttctgtgttttcaaCAGAGAAGGAGGAAATGGAGACAGTTACTCGCTCATCTCTAGGACAGTCCGCATCAGAGACTGAGGAGCGACACAGTGTCCATATCCAAAAAAGAGgtagtggtctagtaggagcatgccacttttctgtgagtttcttggctatc Alignment from GeneWise AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAG-GAGGACACGGTGTCCATATCCAAAAAAGAG atgaagtttttacagttaggagagttggctatgttctgtgttttcaacagAGAAGGAGGAAATGGAGACAGTTACTCGCTCATCTCTAGGACAGTCCGCATCAGAGACTGAGGAGCGACACAGTGTCCATATCCAAAAAAGAGgtagtggtctagtaggagcatgccacttttctgtgagtttcttggctatc #### Sf3b2_ID911_7 --> 0 - 1 Original Alignment ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAG-AGCCGGCAGGAAGAGATGAACTCTCAGCAGg taaggaggaaggcattgggtttcagcccattcataatttattataattagATT---GATCCTTCTGTGGGCCCTAAGATCCCTCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGCAGCCAGCAGGAAGAGATGAACTCTCAG---ggtgagagctattggaccttgccttgatgctgcaacagaggactgatccat Alignment from CESAR ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAG-AGCCGGCAGGAAGAGATGAACTCTCAGCAGg taaggaggaaggcattgggtttcagcccattcataatttattataattagATT---GATCCTTCTGTGGGCCCTAAGATCCCTCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGCAGCCAGCAGGAAGAGATGAACTCTCAG---ggtgagagctattggaccttgccttgatgctgcaacagaggactgatccat Alignment from Spaln_aa2Genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAG-AGCCGGCAGGAAGAGATGAACTCTCAG- taaggaggaaggcattgggtttcagcccattcataatttattataattagATT---GATCCTTCTGTGGGCCCTAAGATCCCTCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGcAGCCAGCAGGAAGAGATGAACTCTCAGGgtgagagctattggaccttgccttgatgctgcaacagaggactgatccat Alignment from Spaln_nt2Genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAG-AGCCGGCAGGAAGAGATGAACTCTCAGCAGG taaggaggaaggcattgggtttcagcccattcataatttattataattagAT---TGATCCTTCTGTGGGCCCTAAGATCCCTCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGCAGCCAGCAGGAAGAGATGAACTCT---CAGGgtgagagctattggaccttgccttgatgctgcaacagaggactgatccat Alignment from Pairagon ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAG-AGCCGGCAGGAAGAGATGAACTCTCAGCAGG taaggaggaaggcattgggtttcagcccattcataatttattataattagAT---TGATCCTTCTGTGGGCCCTAAGATCCCTCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGCAGCCAGCAGGAAGAGATGAACTCT---CAGGgtgagagctattggaccttgccttgatgctgcaacagaggactgatccat Alignment from Exonerate_protein2genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAG-AGCCGGCAGGAAGAGATGAACTCTCAGCAGG taaggaggaaggcattgggtttcagcccattcataatttattataattagATT---GATCCTTCTGTGGGCCCTAAGATCCCTCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGCAGCCAGCAGGAAGAGATGAACTCT---CAGGgtgagagctattggaccttgccttgatgctgcaacagaggactgatccat Alignment from Exonerate_coding2genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAG-AGCCGGCAGGAAGAGATGAACTCTCAGCAGG taaggaggaaggcattgggtttcagcccattcataatttattataattagATT---GATCCTTCTGTGGGCCCTAAGATCCCTCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGCAGCCAGCAGGAAGAGATGAACTCT---CAGGgtgagagctattggaccttgccttgatgctgcaacagaggactgatccat Alignment from GeneWise ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAG-AGCCGGCAGGAAGAGATGAACTCTCAGCAGG taaggaggaaggcattgggtttcagcccattcataatttattataattagATTGAT---CCTTCTGTGGGCCCTAAGATCCCTCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGCAGCCAGCAGGAAGAGATGAACTCT---CAGGgtgagagctattggaccttgccttgatgctgcaacagaggactgatccat #### Sfxn3_ID9284_2 --> 1 - 2 Original Alignment gGCTGGTGTGGCAACCCCGGGTCTCACTGAGGAC-CAGCTATGGCGAGCCAAATACGTGTATGACTCAGCATTCCATCCGGACACGGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTCACCTTCTACag acagctctgacttctgccacagccccttaaccagtcctcatatctggtaggGCTGGTCCAGCAACCCCAGGTCTCACTGAGGACCCAGCTATGGCGAGCTAAATACGTGTATGACTCAGCATTCCATCCAGATACAGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTTACCTTTTACaggtgagccatatcctatgcctcctgcccgagtgctatgcccagatcatgct Alignment from CESAR gGCTGGTGTGGCAACCCCGGGTCTCACTGAGGAC-CAGCTATGGCGAGCCAAATACGTGTATGACTCAGCATTCCATCCGGACACGGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTCACCTTCTACag acagctctgacttctgccacagccccttaaccagtcctcatatctggtaggGCTGGTCCAGCAACCCCAGGTCTCACTGAGGACCCAGCTATGGCGAGCTAAATACGTGTATGACTCAGCATTCCATCCAGATACAGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTTACCTTTTACaggtgagccatatcctatgcctcctgcccgagtgctatgcccagatcatgct Alignment from Spaln_aa2Genome GGCTGGTGTGGCAACCCCGGGTCTCACTGAGGAC-CAGCTATGGCGAGCCAAATACGTGTATGACTCAGCATTCCATCCGGACACGGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTCACCTTCTACAG acagctctgacttctgccacagccccttaaccagtcctcatatctggtagGGCTGGTCCAGCAACCCCAGGTCTCACTGAGGACcCAGCTATGGCGAGCTAAATACGTGTATGACTCAGCATTCCATCCAGATACAGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTTACCTTTTACAGgtgagccatatcctatgcctcctgcccgagtgctatgcccagatcatgct Alignment from Spaln_nt2Genome GGCTGGTGTGGCAACCCCGGGTCTCACTGAGGA-CCAGCTATGGCGAGCCAAATACGTGTATGACTCAGCATTCCATCCGGACACGGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTCACCTTCTACAG acagctctgacttctgccacagccccttaaccagtcctcatatctggtagGGCTGGTCCAGCAACCCCAGGTCTCACTGAGGACCCAGCTATGGCGAGCTAAATACGTGTATGACTCAGCATTCCATCCAGATACAGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTTACCTTTTACAGgtgagccatatcctatgcctcctgcccgagtgctatgcccagatcatgct Alignment from Pairagon GGCTGGTGTGGCAACCCCGGGTCTCACTGAGGA-CCAGCTATGGCGAGCCAAATACGTGTATGACTCAGCATTCCATCCGGACACGGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTCACCTTCTACAG acagctctgacttctgccacagccccttaaccagtcctcatatctggtagGGCTGGTCCAGCAACCCCAGGTCTCACTGAGGACCCAGCTATGGCGAGCTAAATACGTGTATGACTCAGCATTCCATCCAGATACAGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTTACCTTTTACAGgtgagccatatcctatgcctcctgcccgagtgctatgcccagatcatgct Alignment from Exonerate_protein2genome GGCTGGTGTGGCAACCCCGGGTCTCACTGAGGAC-CAGCTATGGCGAGCCAAATACGTGTATGACTCAGCATTCCATCCGGACACGGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTCACCTTCTACAG acagctctgacttctgccacagccccttaaccagtcctcatatctggtagGGCTGGTCCAGCAACCCCAGGTCTCACTGAGGACCCAGCTATGGCGAGCTAAATACGTGTATGACTCAGCATTCCATCCAGATACAGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTTACCTTTTACAGgtgagccatatcctatgcctcctgcccgagtgctatgcccagatcatgct Alignment from Exonerate_coding2genome GGCTGGTGTGGCAACCCCGGGTCTCACTGAGGAC-CAGCTATGGCGAGCCAAATACGTGTATGACTCAGCATTCCATCCGGACACGGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTCACCTTCTACAG acagctctgacttctgccacagccccttaaccagtcctcatatctggtagGGCTGGTCCAGCAACCCCAGGTCTCACTGAGGACCCAGCTATGGCGAGCTAAATACGTGTATGACTCAGCATTCCATCCAGATACAGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTTACCTTTTACAGgtgagccatatcctatgcctcctgcccgagtgctatgcccagatcatgct Alignment from GeneWise GGCTGGTGTGGCAACCCCGGGTCTCACTGAGGAC-CAGCTATGGCGAGCCAAATACGTGTATGACTCAGCATTCCATCCGGACACGGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTCACCTTCTACAG acagctctgacttctgccacagccccttaaccagtcctcatatctggtagGGCTGGTCCAGCAACCCCAGGTCTCACTGAGGACCCAGCTATGGCGAGCTAAATACGTGTATGACTCAGCATTCCATCCAGATACAGGGGAGAAGGTGGTCTTGATTGGCCGTATGTCAGCCCAGGTGCCCATGAACATGACCATTACTGGCTGCATGCTTACCTTTTACAGgtgagccatatcctatgcctcctgcccgagtgctatgcccagatcatgct #### Sfxn3_ID9286_4 --> 1 - 0 Original Alignment gCAGTTGGGGACAGCCTATGTG-AGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG aaactcaggctggacacacctctcctggtgtctggcttgtgttttaacaggCAGTTGGGGACAGCCTATGTGCAGTGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtctgatctccctaccactattggcctctcctggattctttaccctttgt Alignment from CESAR gCAGTTGGGGACAGCCTATGTG-AGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG aaactcaggctggacacacctctcctggtgtctggcttgtgttttaacaggCAGTTGGGGACAGCCTATGTGCAGTGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtctgatctccctaccactattggcctctcctggattctttaccctttgt Alignment from Spaln_aa2Genome GCAGTTGGGGACAGCCTATGTG-AGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG aaactcaggctggacacacctctcctggtgtctggcttgtgttttaacagGCAGTTGGGGACAGCCTATGTGcAGTGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtctgatctccctaccactattggcctctcctggattctttaccctttgt Alignment from Spaln_nt2Genome GCAGTTGGGGACAGCCTATGTG-AGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG aaactcaggctggacacacctctcctggtgtctggcttgtgttttaacagGCAGTTGGGGACAGCCTATGTGCAGTGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtctgatctccctaccactattggcctctcctggattctttaccctttgt Alignment from Pairagon GCAGTTGGGGACAGCCTATGTG-AGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG aaactcaggctggacacacctctcctggtgtctggcttgtgttttaacagGCAGTTGGGGACAGCCTATGTGCAGTGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtctgatctccctaccactattggcctctcctggattctttaccctttgt Alignment from Exonerate_protein2genome GCAGTTGGGGACAGCCTATGTG-AGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG aaactcaggctggacacacctctcctggtgtctggcttgtgttttaacagGCAGTTGGGGACAGCCTATGTGCAGTGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtctgatctccctaccactattggcctctcctggattctttaccctttgt Alignment from Exonerate_coding2genome GCAGTTGGGGACAGCCTATGTG-AGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG aaactcaggctggacacacctctcctggtgtctggcttgtgttttaacagGCAGTTGGGGACAGCCTATGTGCAGTGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtctgatctccctaccactattggcctctcctggattctttaccctttgt Alignment from GeneWise GCAGTTGGGGACAGCCTATGTG-AGTGCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG aaactcaggctggacacacctctcctggtgtctggcttgtgttttaacagGCAGTTGGGGACAGCCTATGTGCAGTGCCACCACTGGAGCTGTGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtctgatctccctaccactattggcctctcctggattctttaccctttgt #### Sfxn4_ID13350_8 --> 0 - 0 Original Alignment GGTTGCTTGTATGGATACACCACAGCCTTTAACATCACC-AATGGAAATGCCAGTTAT gcttctttcatgcctgaagacagtgatcgcttttctctttctcaccatagGGTTGTTTGTATGGATATACCACAGCCTTTAACATTACGCAATGAAAATGCTAGTTATgtgagtatttcgaacccttagaagatagtatttacatcattaaaaaatta Alignment from CESAR GGTTGCTTGTATGGATACACCACAGCCTTTAACATCACC-AATGGAAATGCCAGTTAT gcttctttcatgcctgaagacagtgatcgcttttctctttctcaccatagGGTTGTTTGTATGGATATACCACAGCCTTTAACATTACGCAATGAAAATGCTAGTTATgtgagtatttcgaacccttagaagatagtatttacatcattaaaaaatta Alignment from Spaln_aa2Genome GGTTGCTTGTATGGATACACCACAGCCTTTAACATCACC-AATGGAAATGCCAGTTAT gcttctttcatgcctgaagacagtgatcgcttttctctttctcaccatagGGTTGTTTGTATGGATATACCACAGCCTTTAACATTACGcAATGAAAATGCTAGTTATgtgagtatttcgaacccttagaagatagtatttacatcattaaaaaatta Alignment from Spaln_nt2Genome GGTTGCTTGTATGGATACACCACAGCCTTTAACATCAC-CAATGGAAATGCCAGTTAT gcttctttcatgcctgaagacagtgatcgcttttctctttctcaccatagGGTTGTTTGTATGGATATACCACAGCCTTTAACATTACGCAATGAAAATGCTAGTTATgtgagtatttcgaacccttagaagatagtatttacatcattaaaaaatta Alignment from Pairagon GGTTGCTTGTATGGATACACCACAGCCTTTAACATCAC-CAATGGAAATGCCAGTTAT gcttctttcatgcctgaagacagtgatcgcttttctctttctcaccatagGGTTGTTTGTATGGATATACCACAGCCTTTAACATTACGCAATGAAAATGCTAGTTATgtgagtatttcgaacccttagaagatagtatttacatcattaaaaaatta Alignment from Exonerate_protein2genome GGTTGCTTGTATGGATACACCACAGCCTTTAACATCACC-AATGGAAATGCCAGTTAT gcttctttcatgcctgaagacagtgatcgcttttctctttctcaccatagGGTTGTTTGTATGGATATACCACAGCCTTTAACATTACGCAATGAAAATGCTAGTTATgtgagtatttcgaacccttagaagatagtatttacatcattaaaaaatta Alignment from Exonerate_coding2genome GGTTGCTTGTATGGATACACCACAGCCTTTAACATCACC-AATGGAAATGCCAGTTAT gcttctttcatgcctgaagacagtgatcgcttttctctttctcaccatagGGTTGTTTGTATGGATATACCACAGCCTTTAACATTACGCAATGAAAATGCTAGTTATgtgagtatttcgaacccttagaagatagtatttacatcattaaaaaatta Alignment from GeneWise GGTTGCTTGTATGGATACACCACAGCCTTTAACATCACCAAT-GGAAATGCCAGTTAT gcttctttcatgcctgaagacagtgatcgcttttctctttctcaccatagGGTTGTTTGTATGGATATACCACAGCCTTTAACATTACGCAATGAAAATGCTAGTTATgtgagtatttcgaacccttagaagatagtatttacatcattaaaaaatta #### Sipa1_ID1140_12 --> 2 - 1 Original Alignment ttATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTG-GAGTCACTGTCCCGGGAGg ccctcctcccaaccccacccttcctaagtacgcttttgttttcctggcagttATGCCAGAAGCTGGTAGCGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCACCTCCACTTGCAATACAATTCTGCGAGTCACTGTCACGGGAGggtacagctgccaggtggatgtttactccctcagaccccttccctttcttt Alignment from CESAR ttATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTG-GAGTCACTGTCCCGGGAGg ccctcctcccaaccccacccttcctaagtacgcttttgttttcctggcagttATGCCAGAAGCTGGTAGCGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCACCTCCACTTGCAATACAATTCTGCGAGTCACTGTCACGGGAGggtacagctgccaggtggatgtttactccctcagacccctctccaactctg Alignment from Spaln_aa2Genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTG-GAGTCACTGTCCCGGGAGG ccctcctcccaaccccacccttcctaagtacgcttttgttttcctggcagTTATGCCAGAAGCTGGTAGCGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCACCTCCACTTGCAATACAATTCTGcGAGTCACTGTCACGGGAGGgtacagctgccaggtggatgtttactccctcagaccccttccctttcttt Alignment from Spaln_nt2Genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTG-GAGTCACTGTCCCGGGAGG ccctcctcccaaccccacccttcctaagtacgcttttgttttcctggcagTTATGCCAGAAGCTGGTAGCGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCACCTCCACTTGCAATACAATTCTGCGAGTCACTGTCACGGGAGGgtacagctgccaggtggatgtttactccctcagaccccttccctttcttt Alignment from Pairagon TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTG-GAGTCACTGTCCCGGGAGG ccctcctcccaaccccacccttcctaagtacgcttttgttttcctggcagTTATGCCAGAAGCTGGTAGCGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCACCTCCACTTGCAATACAATTCTGCGAGTCACTGTCACGGGAGGgtacagctgccaggtggatgtttactccctcagaccccttccctttcttt Alignment from Exonerate_protein2genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTG-GAGTCACTGTCCCGGGAGG ccctcctcccaaccccacccttcctaagtacgcttttgttttcctggcagTTATGCCAGAAGCTGGTAGCGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCACCTCCACTTGCAATACAATTCTGCGAGTCACTGTCACGGGAGGgtacagctgccaggtggatgtttactccctcagaccccttccctttcttt Alignment from Exonerate_coding2genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTG-GAGTCACTGTCCCGGGAGG ccctcctcccaaccccacccttcctaagtacgcttttgttttcctggcagTTATGCCAGAAGCTGGTAGCGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCACCTCCACTTGCAATACAATTCTGCGAGTCACTGTCACGGGAGGgtacagctgccaggtggatgtttactccctcagaccccttccctttcttt Alignment from GeneWise TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAG ------TCACTGTCC-- ccctcctcccaaccccacccttcctaagtacgcttttgttttcctggcagTTATGCCAGAAGCTGGTAGCGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCACCTCCACTTGCAATACAATTCTGCGAgtcactgtcacgggagggtacagctgccaggtggatgtttactccctcagACCCCTTCCCTTTCTTT #### Sipa1_ID1141_11 --> 0 - 1 Original Alignment GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTG-TCTCTGCGGAATTCCATCAGTAAGa gccaaggtgacattggatgctacaccatgtaagttgtgcttccttcttagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCAGGACTCTGCTCTCTACGGAATTCCATCAGTAAGagtgagctggagccaggaaataggtcaggtggaggagactgcccctacccc Alignment from CESAR GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTG-TCTCTGCGGAATTCCATCAGTAAGa gccaaggtgacattggatgctacaccatgtaagttgtgcttccttcttagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCAGGACTCTGCTCTCTACGGAATTCCATCAGTAAGagtgagctggagccaggaaataggtcaggtggaggagactgcccctacccc Alignment from Spaln_aa2Genome GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTG-TCTCTGCGGAATTCCATCAGTAAGA gccaaggtgacattggatgctacaccatgtaagttgtgcttccttcttagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCAGGACTCTGcTCTCTACGGAATTCCATCAGTAAGAgtgagctggagccaggaaataggtcaggtggaggagactgcccctacccc Alignment from Spaln_nt2Genome GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTG-TCTCTGCGGAATTCCATCAGTAAGA gccaaggtgacattggatgctacaccatgtaagttgtgcttccttcttagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCAGGACTCTGCTCTCTACGGAATTCCATCAGTAAGAgtgagctggagccaggaaataggtcaggtggaggagactgcccctacccc Alignment from Pairagon GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTG-TCTCTGCGGAATTCCATCAGTAAGA gccaaggtgacattggatgctacaccatgtaagttgtgcttccttcttagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCAGGACTCTGCTCTCTACGGAATTCCATCAGTAAGAgtgagctggagccaggaaataggtcaggtggaggagactgcccctacccc Alignment from Exonerate_protein2genome GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTG-TCTCTGCGGAATTCCATCAGTAAGA gccaaggtgacattggatgctacaccatgtaagttgtgcttccttcttagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCAGGACTCTGCTCTCTACGGAATTCCATCAGTAAGAgtgagctggagccaggaaataggtcaggtggaggagactgcccctacccc Alignment from Exonerate_coding2genome GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTG-TCTCTGCGGAATTCCATCAGTAAGA gccaaggtgacattggatgctacaccatgtaagttgtgcttccttcttagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCAGGACTCTGCTCTCTACGGAATTCCATCAGTAAGAgtgagctggagccaggaaataggtcaggtggaggagactgcccctacccc Alignment from GeneWise GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTG-TCTCTGCGGAATTCCATCAGTAAGA gccaaggtgacattggatgctacaccatgtaagttgtgcttccttcttagGATCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCAGGACTCTGCTCTCTACGGAATTCCATCAGTAAGAgtgagctggagccaggaaataggtcaggtggaggagactgcccctacccc #### Sipa1_ID1142_10 --> 1 - 0 Original Alignment cTCCCTGTCCGATGAGGCTCCA-GTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG cattgctgtggaaaagcagctccactgtatgtttgttttttcttctatagcTCCCTGTCTGATGAGGCCCCACGTCCTGCCCAACACCACACCAGACCTCCTCCTTGTAACCACTGCCAACCCTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtatggtgccaaggtgacattggatgctacaccataaaacttccttttaa Alignment from CESAR cTCCCTGTCCGATGAGGCTCCA-GTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG cattgctgtggaaaagcagctccactgtatgtttgttttttcttctatagcTCCCTGTCTGATGAGGCCCCACGTCCTGCCCAACACCACACCAGACCTCCTCCTTGTAACCACTGCCAACCCTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtatggtgccaaggtgacattggatgctacaccatgtaagttgtgcttcc Alignment from Spaln_aa2Genome CTCCCTGTCCGATGAGGCTCCA-GTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG cattgctgtggaaaagcagctccactgtatgtttgttttttcttctatagCTCCCTGTCTGATGAGGCCCCAcGTCCTGCCCAACACCACACCAGACCTCCTCCTTGTAACCACTGCCAACCCTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtatggtgccaaggtgacattggatgctacaccataaaacttccttttaa Alignment from Spaln_nt2Genome CTCCCTGTCCGATGAGGCTCCA-GTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG cattgctgtggaaaagcagctccactgtatgtttgttttttcttctatagCTCCCTGTCTGATGAGGCCCCACGTCCTGCCCAACACCACACCAGACCTCCTCCTTGTAACCACTGCCAACCCTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtatggtgccaaggtgacattggatgctacaccataaaacttccttttaa Alignment from Pairagon CTCCCTGTCCGATGAGGCTCCA-GTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG cattgctgtggaaaagcagctccactgtatgtttgttttttcttctatagCTCCCTGTCTGATGAGGCCCCACGTCCTGCCCAACACCACACCAGACCTCCTCCTTGTAACCACTGCCAACCCTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtatggtgccaaggtgacattggatgctacaccataaaacttccttttaa Alignment from Exonerate_protein2genome CTCCCTGTCCGATGAGGCTCCA-GTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG cattgctgtggaaaagcagctccactgtatgtttgttttttcttctatagCTCCCTGTCTGATGAGGCCCCACGTCCTGCCCAACACCACACCAGACCTCCTCCTTGTAACCACTGCCAACCCTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtatggtgccaaggtgacattggatgctacaccataaaacttccttttaa Alignment from Exonerate_coding2genome CTCCCTGTCCGATGAGGCTCCA-GTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG cattgctgtggaaaagcagctccactgtatgtttgttttttcttctatagCTCCCTGTCTGATGAGGCCCCACGTCCTGCCCAACACCACACCAGACCTCCTCCTTGTAACCACTGCCAACCCTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtatggtgccaaggtgacattggatgctacaccataaaacttccttttaa Alignment from GeneWise CTCCCTGTCCGATGAGGCTCCA-GTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG cattgctgtggaaaagcagctccactgtatgtttgttttttcttctatagCTCCCTGTCTGATGAGGCCCCACGTCCTGCCCAACACCACACCAGACCTCCTCCTTGTAACCACTGCCAACCCTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtatggtgccaaggtgacattggatgctacaccataaaacttccttttaa #### Sipa1_ID1145_7 --> 1 - 0 Original Alignment gGTGGCAGTGAGCCGCACCCAGGACACTCCT-GCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccggcccctctttccctcaacgcggttctatacccaccaggGTGGCAGTGAGTCGAACCCAGGACACTCCTCGCCTTCAGTCCTGCACTGCCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATTGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACGCAAGGCAGTTCCACGCCATGGCTACATGCACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGACCACTACTTCGCTGGACTTGGCCTCACGGTTTGGCTTGCCATCTCTAGGGGGTAGACGCCATTCAAACCCCCGGAGCTCCGGTGCGGAGCTACAGGCAGCCGATGCACTGATGTGGGGCGTGCGTGCAGCTCCAGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCAGAGGACACTGAGGTGCCTTGCTTATTGGGCATCTCAGCAGAGACGCTGGTGCTGGTGGCACCTCGTGATGGCCATGTGGTCTTCAATTGTGCCTGTCGTGATGTATTGGCCTGGACTTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGGCTGGATGGGGCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgagttactgtcaaacattatgatccttggtttggtgcgcatcaggggc Alignment from CESAR gGTGGCAGTGAGCCGCACCCAGGACACTCCT-GCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccggcccctctttccctcaacgcggttctatacccaccaggGTGGCAGTGAGTCGAACCCAGGACACTCCTCGCCTTCAGTCCTGCACTGCCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATTGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACGCAAGGCAGTTCCACGCCATGGCTACATGCACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGACCACTACTTCGCTGGACTTGGCCTCACGGTTTGGCTTGCCATCTCTAGGGGGTAGACGCCATTCAAACCCCCGGAGCTCCGGTGCGGAGCTACAGGCAGCCGATGCACTGATGTGGGGCGTGCGTGCAGCTCCAGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCAGAGGACACTGAGGTGCCTTGCTTATTGGGCATCTCAGCAGAGACGCTGGTGCTGGTGGCACCTCGTGATGGCCATGTGGTCTTCAATTGTGCCTGTCGTGATGTATTGGCCTGGACTTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGGCTGGATGGGGCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgagttactgtcaaacattatgatccttggtttggtgcgcatcaggggc Alignment from Spaln_aa2Genome GGTGGCAGTGAGCCGCACCCAGGACACTCCT-GCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccggcccctctttccctcaacgcggttctatacccaccagGGTGGCAGTGAGTCGAACCCAGGACACTCCTcGCCTTCAGTCCTGCACTGCCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATTGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACGCAAGGCAGTTCCACGCCATGGCTACATGCACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGACCACTACTTCGCTGGACTTGGCCTCACGGTTTGGCTTGCCATCTCTAGGGGGTAGACGCCATTCAAACCCCCGGAGCTCCGGTGCGGAGCTACAGGCAGCCGATGCACTGATGTGGGGCGTGCGTGCAGCTCCAGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCAGAGGACACTGAGGTGCCTTGCTTATTGGGCATCTCAGCAGAGACGCTGGTGCTGGTGGCACCTCGTGATGGCCATGTGGTCTTCAATTGTGCCTGTCGTGATGTATTGGCCTGGACTTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGGCTGGATGGGGCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgagttactgtcaaacattatgatccttggtttggtgcgcatcaggggc Alignment from Spaln_nt2Genome GGTGGCAGTGAGCCGCACCCAGGACACTCCT-GCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccggcccctctttccctcaacgcggttctatacccaccagGGTGGCAGTGAGTCGAACCCAGGACACTCCTCGCCTTCAGTCCTGCACTGCCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATTGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACGCAAGGCAGTTCCACGCCATGGCTACATGCACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGACCACTACTTCGCTGGACTTGGCCTCACGGTTTGGCTTGCCATCTCTAGGGGGTAGACGCCATTCAAACCCCCGGAGCTCCGGTGCGGAGCTACAGGCAGCCGATGCACTGATGTGGGGCGTGCGTGCAGCTCCAGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCAGAGGACACTGAGGTGCCTTGCTTATTGGGCATCTCAGCAGAGACGCTGGTGCTGGTGGCACCTCGTGATGGCCATGTGGTCTTCAATTGTGCCTGTCGTGATGTATTGGCCTGGACTTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGGCTGGATGGGGCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgagttactgtcaaacattatgatccttggtttggtgcgcatcaggggc Alignment from Pairagon GGTGGCAGTGAGCCGCACCCAGGACACTCCT-GCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccggcccctctttccctcaacgcggttctatacccaccagGGTGGCAGTGAGTCGAACCCAGGACACTCCTCGCCTTCAGTCCTGCACTGCCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATTGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACGCAAGGCAGTTCCACGCCATGGCTACATGCACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGACCACTACTTCGCTGGACTTGGCCTCACGGTTTGGCTTGCCATCTCTAGGGGGTAGACGCCATTCAAACCCCCGGAGCTCCGGTGCGGAGCTACAGGCAGCCGATGCACTGATGTGGGGCGTGCGTGCAGCTCCAGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCAGAGGACACTGAGGTGCCTTGCTTATTGGGCATCTCAGCAGAGACGCTGGTGCTGGTGGCACCTCGTGATGGCCATGTGGTCTTCAATTGTGCCTGTCGTGATGTATTGGCCTGGACTTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGGCTGGATGGGGCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgagttactgtcaaacattatgatccttggtttggtgcgcatcaggggc Alignment from Exonerate_protein2genome GGTGGCAGTGAGCCGCACCCAGGACACTCCT-GCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccggcccctctttccctcaacgcggttctatacccaccagGGTGGCAGTGAGTCGAACCCAGGACACTCCTCGCCTTCAGTCCTGCACTGCCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATTGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACGCAAGGCAGTTCCACGCCATGGCTACATGCACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGACCACTACTTCGCTGGACTTGGCCTCACGGTTTGGCTTGCCATCTCTAGGGGGTAGACGCCATTCAAACCCCCGGAGCTCCGGTGCGGAGCTACAGGCAGCCGATGCACTGATGTGGGGCGTGCGTGCAGCTCCAGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCAGAGGACACTGAGGTGCCTTGCTTATTGGGCATCTCAGCAGAGACGCTGGTGCTGGTGGCACCTCGTGATGGCCATGTGGTCTTCAATTGTGCCTGTCGTGATGTATTGGCCTGGACTTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGGCTGGATGGGGCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgagttactgtcaaacattatgatccttggtttggtgcgcatcaggggc Alignment from Exonerate_coding2genome GGTGGCAGTGAGCCGCACCCAGGACACTCCT-GCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccggcccctctttccctcaacgcggttctatacccaccagGGTGGCAGTGAGTCGAACCCAGGACACTCCTCGCCTTCAGTCCTGCACTGCCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATTGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACGCAAGGCAGTTCCACGCCATGGCTACATGCACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGACCACTACTTCGCTGGACTTGGCCTCACGGTTTGGCTTGCCATCTCTAGGGGGTAGACGCCATTCAAACCCCCGGAGCTCCGGTGCGGAGCTACAGGCAGCCGATGCACTGATGTGGGGCGTGCGTGCAGCTCCAGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCAGAGGACACTGAGGTGCCTTGCTTATTGGGCATCTCAGCAGAGACGCTGGTGCTGGTGGCACCTCGTGATGGCCATGTGGTCTTCAATTGTGCCTGTCGTGATGTATTGGCCTGGACTTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGGCTGGATGGGGCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgagttactgtcaaacattatgatccttggtttggtgcgcatcaggggc Alignment from GeneWise GGTGGCAGTGAGCCGCACCCAGGACACTCCT-GCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccggcccctctttccctcaacgcggttctatacccaccagGGTGGCAGTGAGTCGAACCCAGGACACTCCTCGCCTTCAGTCCTGCACTGCCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATTGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACGCAAGGCAGTTCCACGCCATGGCTACATGCACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGACCACTACTTCGCTGGACTTGGCCTCACGGTTTGGCTTGCCATCTCTAGGGGGTAGACGCCATTCAAACCCCCGGAGCTCCGGTGCGGAGCTACAGGCAGCCGATGCACTGATGTGGGGCGTGCGTGCAGCTCCAGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCAGAGGACACTGAGGTGCCTTGCTTATTGGGCATCTCAGCAGAGACGCTGGTGCTGGTGGCACCTCGTGATGGCCATGTGGTCTTCAATTGTGCCTGTCGTGATGTATTGGCCTGGACTTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGGCTGGATGGGGCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgagttactgtcaaacattatgatccttggtttggtgcgcatcaggggc #### Slc18a2_ID12938_6 --> 2 - 1 Original Alignment tgGGACCCCCCTTTGGAAGTGTGCTCTATGAGTTTGTGGGG-AAGACAGCTCCTTTCCTGGTGCTTGCTGCCTTGGTGCTCTTGGATGGAg gaggtcaatcatcttcgaaggctgtctttgataaattcatttgattctagtgGGGCCACCATTCGGCAGTGTGCTCTATGAGTTTGTGGGGCAAGACAGCTCCCTTCCTGGTGCTTGCTGCATTGGTGCCATTGGATGGAggtaggggatcatggctgtgacctgtgtaagggaacatgtactggccactt Alignment from CESAR tgGGACCCCCCTTTGGAAGTGTGCTCTATGAGTTTGTGGGG-AAGACAGCTCCTTTCCTGGTGCTTGCTGCCTTGGTGCTCTTGGATGGAg gaggtcaatcatcttcgaaggctgtctttgataaattcatttgattctagtgGGGCCACCATTCGGCAGTGTGCTCTATGAGTTTGTGGGGCAAGACAGCTCCCTTCCTGGTGCTTGCTGCATTGGTGCCATTGGATGGAggtaggggatcatggctgtgacctgtgtaagggaacatgtactggccactt Alignment from Spaln_aa2Genome TGGGACCCCCCTTTGGAAGTGTGCTCTATGAGTTTGTGGGG-AAGACAGCTCCTTTCCTGGTGCTTGCTGCCTTGGTGCTCTTGGATGGAG gaggtcaatcatcttcgaaggctgtctttgataaattcatttgattctagTGGGGCCACCATTCGGCAGTGTGCTCTATGAGTTTGTGGGGcAAGACAGCTCCCTTCCTGGTGCTTGCTGCATTGGTGCCATTGGATGGAGgtaggggatcatggctgtgacctgtgtaagggaacatgtactggccactt Alignment from Spaln_nt2Genome TGGGACCCCCCTTTGGAAGTGTGCTCTATGAGTTTGT-GGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCCTTGGTGCTCTTGGATGGAG gaggtcaatcatcttcgaaggctgtctttgataaattcatttgattctagTGGGGCCACCATTCGGCAGTGTGCTCTATGAGTTTGTGGGGCAAGACAGCTCCCTTCCTGGTGCTTGCTGCATTGGTGCCATTGGATGGAGgtaggggatcatggctgtgacctgtgtaagggaacatgtactggccactt Alignment from Pairagon TGGGACCCCCCTTTGGAAGTGTGCTCTATGAGTTTGTGGGG-AAGACAGCTCCTTTCCTGGTGCTTGCTGCCTTGGTGCTCTTGGATGGAG gaggtcaatcatcttcgaaggctgtctttgataaattcatttgattctagTGGGGCCACCATTCGGCAGTGTGCTCTATGAGTTTGTGGGGCAAGACAGCTCCCTTCCTGGTGCTTGCTGCATTGGTGCCATTGGATGGAGgtaggggatcatggctgtgacctgtgtaagggaacatgtactggccactt Alignment from Exonerate_protein2genome TGGGACCCCCCTTTGGAAGTGTGCTCTATGAGTTTGTG-GGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCCTTGGTGCTCTTGGATGGAG gaggtcaatcatcttcgaaggctgtctttgataaattcatttgattctagTGGGGCCACCATTCGGCAGTGTGCTCTATGAGTTTGTGGGGCAAGACAGCTCCCTTCCTGGTGCTTGCTGCATTGGTGCCATTGGATGGAGgtaggggatcatggctgtgacctgtgtaagggaacatgtactggccactt Alignment from Exonerate_coding2genome TGGGACCCCCCTTTGGAAGTGTGCTCTATGAGTTTGTG-GGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCCTTGGTGCTCTTGGATGGAG gaggtcaatcatcttcgaaggctgtctttgataaattcatttgattctagTGGGGCCACCATTCGGCAGTGTGCTCTATGAGTTTGTGGGGCAAGACAGCTCCCTTCCTGGTGCTTGCTGCATTGGTGCCATTGGATGGAGgtaggggatcatggctgtgacctgtgtaagggaacatgtactggccactt Alignment from GeneWise TGGGACCCCCCTTTGGAAGTGTGCTCTATGAGTTT-GTGGGGAAGACAGCTCCTTTCCTGGTGCTTGCTGCCTTGGTGCTCTTGGATGGAG gaggtcaatcatcttcgaaggctgtctttgataaattcatttgattctagTGGGGCCACCATTCGGCAGTGTGCTCTATGAGTTTGTGGGGCAAGACAGCTCCCTTCCTGGTGCTTGCTGCATTGGTGCCATTGGATGGAGgtaggggatcatggctgtgacctgtgtaagggaacatgtactggccactt #### Slc18a2_ID12939_7 --> 2 - 0 Original Alignment ctATTCAGCTCTTTGTG-CTCCAGCCATCCCGAGTGCAGCCAGAA ctggccacttctgctacccaaggagggatgatatttcttttttttttcagctATTCAGCTCTTTGTACATCCAGCCCTCCCGTGTACTGCCAGAAgtgggcagctgggagtgggaggtgagggcccacgactgacctaggcaagt Alignment from CESAR ctATTCAGCTCTTTGTG-CTCCAGCCATCCCGAGTGCAGCCAGAA ctggccacttctgctacccaaggagggatgatatttcttttttttttcagctATTCAGCTCTTTGTACATCCAGCCCTCCCGTGTACTGCCAGAAgtgggcagctgggagtgggaggtgagggcccacgactgacctaggcaagt Alignment from Spaln_aa2Genome CTATTCAGCTCTTTGTG-CTCCAGCCATCCCGAGTGCAGCCAGAA ctggccacttctgctacccaaggagggatgatatttcttttttttttcagCTATTCAGCTCTTTGTAcATCCAGCCCTCCCGTGTACTGCCAGAAgtgggcagctgggagtgggaggtgagggcccacgactgacctaggcaagt Alignment from Spaln_nt2Genome CTATTCAGCTCTTTGTGC-TCCAGCCATCCCGAGTGCAGCCAGAA ctggccacttctgctacccaaggagggatgatatttcttttttttttcagCTATTCAGCTCTTTGTACATCCAGCCCTCCCGTGTACTGCCAGAAgtgggcagctgggagtgggaggtgagggcccacgactgacctaggcaagt Alignment from Pairagon CTATTCAGCTCTTTGTGC-TCCAGCCATCCCGAGTGCAGCCAGAA ctggccacttctgctacccaaggagggatgatatttcttttttttttcagCTATTCAGCTCTTTGTACATCCAGCCCTCCCGTGTACTGCCAGAAgtgggcagctgggagtgggaggtgagggcccacgactgacctaggcaagt Alignment from Exonerate_protein2genome CTATTCAGCTCTTTGTG-CTCCAGCCATCCCGAGTGCAGCCAGAA ctggccacttctgctacccaaggagggatgatatttcttttttttttcagCTATTCAGCTCTTTGTACATCCAGCCCTCCCGTGTACTGCCAGAAgtgggcagctgggagtgggaggtgagggcccacgactgacctaggcaagt Alignment from Exonerate_coding2genome CTATTCAGCTCTTTGT ctggccacttctgctacccaaggagggatgatatttcttttttttttcagctattcagctctttgtacatccagccctcccgtgtactgccagaagtgggcagctgggagtgggaggtgagggcccacgACTGACCTAGGCAAGT Alignment from GeneWise TCAGCT ctggccacttctgctacccaaggagggatgatatttcttttttttttcagctattcagctctttgtacatccagccctcccgtgtactgccagaagtgggcagctgggagtgggaggtgagggcccacgactgacctagGCAAGT #### Slc18a2_ID12940_8 --> 0 - 1 Original Alignment AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGAC-CCATACATTCTCATCGCTGCAg cccacgactgacctaggcaagtttttctggtattcaaacattcattgtagAGTCAGAAGGGGACACCTCTTACGACCTTACTGAAGGACCCCATACATTCTGATAGCTGCAggtgagtagcccttaatttattgaaggtatggaaagttctaaagggataga Alignment from CESAR AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGAC-CCATACATTCTCATCGCTGCAg cccacgactgacctaggcaagtttttctggtattcaaacattcattgtagAGTCAGAAGGGGACACCTCTTACGACCTTACTGAAGGACCCCATACATTCTGATAGCTGCAggtgagtagcccttaatttattgaaggtatggaaagttctaaagggataga Alignment from Spaln_aa2Genome AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGAC-CCATACATTCTCATCGCTGCAG cccacgactgacctaggcaagtttttctggtattcaaacattcattgtagAGTCAGAAGGGGACACCTCTTACGACCTTACTGAAGGACcCCATACATTCTGATAGCTGCAGgtgagtagcccttaatttattgaaggtatggaaagttctaaagggataga Alignment from Spaln_nt2Genome AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCC-ATACATTCTCATCGCTGCAG cccacgactgacctaggcaagtttttctggtattcaaacattcattgtagAGTCAGAAGGGGACACCTCTTACGACCTTACTGAAGGACCCCATACATTCTGATAGCTGCAGgtgagtagcccttaatttattgaaggtatggaaagttctaaagggataga Alignment from Pairagon AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGA-CCCATACATTCTCATCGCTGCAG cccacgactgacctaggcaagtttttctggtattcaaacattcattgtagAGTCAGAAGGGGACACCTCTTACGACCTTACTGAAGGACCCCATACATTCTGATAGCTGCAGgtgagtagcccttaatttattgaaggtatggaaagttctaaagggataga Alignment from Exonerate_protein2genome AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGAC-CCATACATTCTCATCGCTGCAG cccacgactgacctaggcaagtttttctggtattcaaacattcattgtagAGTCAGAAGGGGACACCTCTTACGACCTTACTGAAGGACCCCATACATTCTGATAGCTGCAGgtgagtagcccttaatttattgaaggtatggaaagttctaaagggataga Alignment from Exonerate_coding2genome AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGAC-CCATACATTCTCATCGCTGCAG cccacgactgacctaggcaagtttttctggtattcaaacattcattgtagAGTCAGAAGGGGACACCTCTTACGACCTTACTGAAGGACCCCATACATTCTGATAGCTGCAGgtgagtagcccttaatttattgaaggtatggaaagttctaaagggataga Alignment from GeneWise AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAG-GACCCATACATTCTCATCGCTGCAG cccacgactgacctaggcaagtttttctggtattcaaacattcattgtagAGTCAGAAGGGGACACCTCTTACGACCTTACTGAAGGACCCCATACATTCTGATAGCTGCAGgtgagtagcccttaatttattgaaggtatggaaagttctaaagggataga #### Slc22a20_ID1351_2 --> 0 - 2 Original Alignment TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTG-GCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACag tgacaagccaagcctagggacaaggtttaacctttcactactctggccagTGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGCGCTCAATCTATCTACATGTCTGGAGTGTTGGTGGGAGCTGCCTTGTTTGGTTGTCTAGCTGACaggtacagcttttggggagcaaccatatgttcactcatatactgtcacttct Alignment from CESAR TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTG-GCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACag tgacaagccaagcctagggacaaggtttaacctttcactactctggccagTGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGCGCTCAATCTATCTACATGTCTGGAGTGTTGGTGGGAGCTGCCTTGTTTGGTTGTCTAGCTGACaggtacagcttttggggagcaaccatatgttcactcatatactgtcacttct Alignment from Spaln_aa2Genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTG-GCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG tgacaagccaagcctagggacaaggtttaacctttcactactctggccagTGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGcGCTCAATCTATCTACATGTCTGGAGTGTTGGTGGGAGCTGCCTTGTTTGGTTGTCTAGCTGACAGgtacagcttttggggagcaaccatatgttcactcatatactgtcacttct Alignment from Spaln_nt2Genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTG-GCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG tgacaagccaagcctagggacaaggtttaacctttcactactctggccagTGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGCGCTCAATCTATCTACATGTCTGGAGTGTTGGTGGGAGCTGCCTTGTTTGGTTGTCTAGCTGACAGgtacagcttttggggagcaaccatatgttcactcatatactgtcacttct Alignment from Pairagon TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTG-GCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG tgacaagccaagcctagggacaaggtttaacctttcactactctggccagTGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGCGCTCAATCTATCTACATGTCTGGAGTGTTGGTGGGAGCTGCCTTGTTTGGTTGTCTAGCTGACAGgtacagcttttggggagcaaccatatgttcactcatatactgtcacttct Alignment from Exonerate_protein2genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTG-GCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG tgacaagccaagcctagggacaaggtttaacctttcactactctggccagTGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGCGCTCAATCTATCTACATGTCTGGAGTGTTGGTGGGAGCTGCCTTGTTTGGTTGTCTAGCTGACAGgtacagcttttggggagcaaccatatgttcactcatatactgtcacttct Alignment from Exonerate_coding2genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTG-GCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG tgacaagccaagcctagggacaaggtttaacctttcactactctggccagTGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGCGCTCAATCTATCTACATGTCTGGAGTGTTGGTGGGAGCTGCCTTGTTTGGTTGTCTAGCTGACAGgtacagcttttggggagcaaccatatgttcactcatatactgtcacttct Alignment from GeneWise TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTG-GCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG tgacaagccaagcctagggacaaggtttaacctttcactactctggccagTGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGCGCTCAATCTATCTACATGTCTGGAGTGTTGGTGGGAGCTGCCTTGTTTGGTTGTCTAGCTGACAGgtacagcttttggggagcaaccatatgttcactcatatactgtcacttct #### Slc29a2_ID790_4 --> 1 - 1 Original Alignment cATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATACTACTGCTCTTTGCCCTGACAGCAGCGTTGGTGAAGGTGGACTTGAGCCCTGGGCTGTTCTTC-TCTGTCACCATGGCGTCCGTCTGGTTCATCAATt ggcatctgctcttggtggcctcctgatgctaacaagtggtccctctgcagcATCCCTGAATCGGTGCAGATTCTGGGTAGTTTGCTCCCCATACTACTACTGTTTGCCCTGACAGCAGCCTTGGTGAAGGAGGACTTGAGCCCTGGGCTGTTCTTCCTCTGTTACCATGGCATCTGTCTGGTTCATCAATtgtaccacacaccccagctcaatttccagtgcagcaacagccgagcagacc Alignment from CESAR cATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATACTACTGCTCTTTGCCCTGACAGCAGCGTTGGTGAAGGTGGACTTGAGCCCTGGGCTGTTCTTC-TCTGTCACCATGGCGTCCGTCTGGTTCATCAATt ggcatctgctcttggtggcctcctgatgctaacaagtggtccctctgcagcATCCCTGAATCGGTGCAGATTCTGGGTAGTTTGCTCCCCATACTACTACTGTTTGCCCTGACAGCAGCCTTGGTGAAGGAGGACTTGAGCCCTGGGCTGTTCTTCCTCTGTTACCATGGCATCTGTCTGGTTCATCAATtgtaccacacaccccagctcaatttccagtgcagcaacagccgagcagacc Alignment from Spaln_aa2Genome CATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATACTACTGCTCTTTGCCCTGACAGCAGCGTTGGTGAAGGTGGACTTGAGCCCTGGGCTGTTCTTC-TCTGTCACCATGGCGTCCGTCTGGTTCATCAATT ggcatctgctcttggtggcctcctgatgctaacaagtggtccctctgcagCATCCCTGAATCGGTGCAGATTCTGGGTAGTTTGCTCCCCATACTACTACTGTTTGCCCTGACAGCAGCCTTGGTGAAGGAGGACTTGAGCCCTGGGCTGTTCTTCcTCTGTTACCATGGCATCTGTCTGGTTCATCAATTgtaccacacaccccagctcaatttccagtgcagcaacagccgagcagacc Alignment from Spaln_nt2Genome CATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATACTACTGCTCTTTGCCCTGACAGCAGCGTTGGTGAAGGTGGACTTGAGCCCTGGGCTGTTCTT-CTCTGTCACCATGGCGTCCGTCTGGTTCATCAATT ggcatctgctcttggtggcctcctgatgctaacaagtggtccctctgcagCATCCCTGAATCGGTGCAGATTCTGGGTAGTTTGCTCCCCATACTACTACTGTTTGCCCTGACAGCAGCCTTGGTGAAGGAGGACTTGAGCCCTGGGCTGTTCTTCCTCTGTTACCATGGCATCTGTCTGGTTCATCAATTgtaccacacaccccagctcaatttccagtgcagcaacagccgagcagacc Alignment from Pairagon CATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATACTACTGCTCTTTGCCCTGACAGCAGCGTTGGTGAAGGTGGACTTGAGCCCTGGGCTGTTCTT-CTCTGTCACCATGGCGTCCGTCTGGTTCATCAATT ggcatctgctcttggtggcctcctgatgctaacaagtggtccctctgcagCATCCCTGAATCGGTGCAGATTCTGGGTAGTTTGCTCCCCATACTACTACTGTTTGCCCTGACAGCAGCCTTGGTGAAGGAGGACTTGAGCCCTGGGCTGTTCTTCCTCTGTTACCATGGCATCTGTCTGGTTCATCAATTgtaccacacaccccagctcaatttccagtgcagcaacagccgagcagacc Alignment from Exonerate_protein2genome CATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATACTACTGCTCTTTGCCCTGACAGCAGCGTTGGTGAAGGTGGACTTGAGCCCTGGGCTGTTCTTC-TCTGTCACCATGGCGTCCGTCTGGTTCATCAATT ggcatctgctcttggtggcctcctgatgctaacaagtggtccctctgcagCATCCCTGAATCGGTGCAGATTCTGGGTAGTTTGCTCCCCATACTACTACTGTTTGCCCTGACAGCAGCCTTGGTGAAGGAGGACTTGAGCCCTGGGCTGTTCTTCCTCTGTTACCATGGCATCTGTCTGGTTCATCAATTgtaccacacaccccagctcaatttccagtgcagcaacagccgagcagacc Alignment from Exonerate_coding2genome CATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATACTACTGCTCTTTGCCCTGACAGCAGCGTTGGTGAAGGTGGACTTGAGCCCTGGGCTGTTCTTC-TCTGTCACCATGGCGTCCGTCTGGTTCATCAATT ggcatctgctcttggtggcctcctgatgctaacaagtggtccctctgcagCATCCCTGAATCGGTGCAGATTCTGGGTAGTTTGCTCCCCATACTACTACTGTTTGCCCTGACAGCAGCCTTGGTGAAGGAGGACTTGAGCCCTGGGCTGTTCTTCCTCTGTTACCATGGCATCTGTCTGGTTCATCAATTgtaccacacaccccagctcaatttccagtgcagcaacagccgagcagacc Alignment from GeneWise CATCCCCGAGTCGGTGCGGATTCTGGGCAGCCTGCTGGCCATACTACTGCTCTTTGCCCTGACAGCAGCGTTGGTGAAGGTGGACTTGAGCCCTGGGCTGTTCTTC-TCTGTCACCATGGCGTCCGTCTGGTTCATCAATT ggcatctgctcttggtggcctcctgatgctaacaagtggtccctctgcagCATCCCTGAATCGGTGCAGATTCTGGGTAGTTTGCTCCCCATACTACTACTGTTTGCCCTGACAGCAGCCTTGGTGAAGGAGGACTTGAGCCCTGGGCTGTTCTTCCTCTGTTACCATGGCATCTGTCTGGTTCATCAATTgtaccacacaccccagctcaatttccagtgcagcaacagccgagcagacc #### Slc29a2_ID791_5 --> 2 - 1 Original Alignment ccTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGG-CAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCa tcctctaggtgtggctgtctaagtgttgctctgattttgtttctacttagccTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGCGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCTTTGGCCagtagagacacctgggggtctaaagagctggctagaaaaagcagatagagg Alignment from CESAR ccTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGG-CAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCa tcctctaggtgtggctgtctaagtgttgctctgattttgtttctacttagccTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGCGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCTTTGGCCagtagagacacctgggggtctaaagagctggctagaaaaagcagatagagg Alignment from Spaln_aa2Genome CCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTT-GGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCA tcctctaggtgtggctgtctaagtgttgctctgattttgtttctacttagCCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTgGGCCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGCGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCTTTGGCCAgtagagacacctgggggtctaaagagctggctagaaaaagcagatagagg Alignment from Spaln_nt2Genome CCTTCTGTGCCGTGCTTCAAGGCAGCCTC-TTTGGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCA tcctctaggtgtggctgtctaagtgttgctctgattttgtttctacttagCCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGCGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCTTTGGCCAgtagagacacctgggggtctaaagagctggctagaaaaagcagatagagg Alignment from Pairagon CCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGG-CAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCA tcctctaggtgtggctgtctaagtgttgctctgattttgtttctacttagCCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGCGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCTTTGGCCAgtagagacacctgggggtctaaagagctggctagaaaaagcagatagagg Alignment from Exonerate_protein2genome CCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTT-GGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCA tcctctaggtgtggctgtctaagtgttgctctgattttgtttctacttagCCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGCGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCTTTGGCCAgtagagacacctgggggtctaaagagctggctagaaaaagcagatagagg Alignment from Exonerate_coding2genome CCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTT-GGGCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCA tcctctaggtgtggctgtctaagtgttgctctgattttgtttctacttagCCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGCGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCTTTGGCCAgtagagacacctgggggtctaaagagctggctagaaaaagcagatagagg Alignment from GeneWise CCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGG-CAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGTGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCCTTGGCCA tcctctaggtgtggctgtctaagtgttgctctgattttgtttctacttagCCTTCTGTGCCGTGCTTCAAGGCAGCCTCTTTGGGCCAGCTGGGTACCATGCCTTCTACCTACAGCACCCTCTTCCTCAGCGGCCAGGGCCTGGCTGGGATCTTCGCTGCCCTTGCTATGCTCATGTCTTTGGCCAgtagagacacctgggggtctaaagagctggctagaaaaagcagatagagg #### Slc29a2_ID792_6 --> 2 - 0 Original Alignment gtGGCGTGGATGCCCAGACCTCTGCTCTT-GGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gcagcactaggagacttgtatctccttgtaagaaaaatcttttgctttaggtGGTGTGGATGCCCAGACCTCTGCTCTTCGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtgggctgctacatggtctaggttatgcactaccttaatgtctgaaaaaa Alignment from CESAR gtGGCGTGGATGCCCAGACCTCTGCTCTT-GGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gcagcactaggagacttgtatctccttgtaagaaaaatcttttgctttaggtGGTGTGGATGCCCAGACCTCTGCTCTTCGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtgggctgctacatggtctaggttatgcactaccttaatgtctgaaaaaa Alignment from Spaln_aa2Genome GTGGCGTGGATGCCCAGACCTCTGCTCTT-GGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gcagcactaggagacttgtatctccttgtaagaaaaatcttttgctttagGTGGTGTGGATGCCCAGACCTCTGCTCTTcGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtgggctgctacatggtctaggttatgcactaccttaatgtctgaaaaaa Alignment from Spaln_nt2Genome GTGGCGTGGATGCCCAGACCTCTGCTCTT-GGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gcagcactaggagacttgtatctccttgtaagaaaaatcttttgctttagGTGGTGTGGATGCCCAGACCTCTGCTCTTCGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtgggctgctacatggtctaggttatgcactaccttaatgtctgaaaaaa Alignment from Pairagon GTGGCGTGGATGCCCAGACCTCTGCTCTT-GGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gcagcactaggagacttgtatctccttgtaagaaaaatcttttgctttagGTGGTGTGGATGCCCAGACCTCTGCTCTTCGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtgggctgctacatggtctaggttatgcactaccttaatgtctgaaaaaa Alignment from Exonerate_protein2genome GTGGCGTGGATGCCCAGACCTCTGCTCTT-GGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gcagcactaggagacttgtatctccttgtaagaaaaatcttttgctttagGTGGTGTGGATGCCCAGACCTCTGCTCTTCGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtgggctgctacatggtctaggttatgcactaccttaatgtctgaaaaaa Alignment from Exonerate_coding2genome GTGGCGTGGATGCCCAGACCTCTGCTCTT-GGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gcagcactaggagacttgtatctccttgtaagaaaaatcttttgctttagGTGGTGTGGATGCCCAGACCTCTGCTCTTCGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtgggctgctacatggtctaggttatgcactaccttaatgtctgaaaaaa Alignment from GeneWise GTGGCGTGGATGCCCAGACCTCTGCT-CTTGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG gcagcactaggagacttgtatctccttgtaagaaaaatcttttgctttagGTGGTGTGGATGCCCAGACCTCTGCTCTTCGGATACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtgggctgctacatggtctaggttatgcactaccttaatgtctgaaaaaa #### Slc29a2_ID795_9 --> 0 - 1 Original Alignment ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGC-CCCGGGAAGTGGg tgcaaatgggacttccctgaccactcacaccctactcactgtccttacagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCTTCACAGTCACCCTATCCGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCTGGGAAATGGggtataagcctgggataatgcatggcatggggcagggggggcaggggggga Alignment from CESAR ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCC-GGGAAGTGGg tgcaaatgggacttccctgaccactcacaccctactcactgtccttacagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCTTCACAGTCACCCTATCCGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCTGGGAAATGGggtataagcctgggataatgcatggcatggggcagggggggcaggggggga Alignment from Spaln_aa2Genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCC-GGGAAGTGGG tgcaaatgggacttccctgaccactcacaccctactcactgtccttacagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCTTCACAGTCACCCTATCCGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCtGGGAAATGGGgtataagcctgggataatgcatggcatggggcagggggggcaggggggga Alignment from Spaln_nt2Genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCC-GGGAAGTGGG tgcaaatgggacttccctgaccactcacaccctactcactgtccttacagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCTTCACAGTCACCCTATCCGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCTGGGAAATGGGgtataagcctgggataatgcatggcatggggcagggggggcaggggggga Alignment from Pairagon ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCC-GGGAAGTGGG tgcaaatgggacttccctgaccactcacaccctactcactgtccttacagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCTTCACAGTCACCCTATCCGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCTGGGAAATGGGgtataagcctgggataatgcatggcatggggcagggggggcaggggggga Alignment from Exonerate_protein2genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGC-CCCGGGAAGTGGG tgcaaatgggacttccctgaccactcacaccctactcactgtccttacagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCTTCACAGTCACCCTATCCGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCTGGGAAATGGGgtataagcctgggataatgcatggcatggggcagggggggcaggggggga Alignment from Exonerate_coding2genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGC-CCCGGGAAGTGGG tgcaaatgggacttccctgaccactcacaccctactcactgtccttacagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCTTCACAGTCACCCTATCCGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCTGGGAAATGGGgtataagcctgggataatgcatggcatggggcagggggggcaggggggga Alignment from GeneWise ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCC------------------------------------------------------------- tgcaaatgggacttccctgaccactcacaccctactcactgtccttacagATCTGGCTGACAGCACTGTGCCTTGTGTTGGTCTTCACAGTCACCCTATCCGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCTGGGAAATGGGGTATAAGCCTGGGATAATGCATGGCATGGGGCAGGGGGGGCAGGGGGGGA #### Slc3a2_ID2303_6 --> 0 - 2 Original Alignment AATGCACCCTTGTACTTG-GCTGAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACag cccagccataggaaggtgtgttccctgctttttattttccttccccatagAATGCACCTTTGTACTTACGCGGAGTGGCAGAACATCACCAAGAACCTAAGTGAGGACaggtactgacccagcaccccagcctggctgagccccttatgagagctctgag Alignment from CESAR AATGCACCCTTGTACTTG-GCTGAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACag cccagccataggaaggtgtgttccctgctttttattttccttccccatagAATGCACCTTTGTACTTACGCGGAGTGGCAGAACATCACCAAGAACCTAAGTGAGGACaggtactgacccagcaccccagcctggctgagccccttatgagagctctgag Alignment from Spaln_aa2Genome AATGCACCCTTGTACTTG-GCTGAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACAG cccagccataggaaggtgtgttccctgctttttattttccttccccatagAATGCACCTTTGTACTTAcGCGGAGTGGCAGAACATCACCAAGAACCTAAGTGAGGACAGgtactgacccagcaccccagcctggctgagccccttatgagagctctgag Alignment from Spaln_nt2Genome AATGCACCCTTGTACTTG-GCTGAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACAG cccagccataggaaggtgtgttccctgctttttattttccttccccatagAATGCACCTTTGTACTTACGCGGAGTGGCAGAACATCACCAAGAACCTAAGTGAGGACAGgtactgacccagcaccccagcctggctgagccccttatgagagctctgag Alignment from Pairagon AATGCACCCTTGTACTTG-GCTGAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACAG cccagccataggaaggtgtgttccctgctttttattttccttccccatagAATGCACCTTTGTACTTACGCGGAGTGGCAGAACATCACCAAGAACCTAAGTGAGGACAGgtactgacccagcaccccagcctggctgagccccttatgagagctctgag Alignment from Exonerate_protein2genome AATGCACCCTTGTACTTG-GCTGAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACAG cccagccataggaaggtgtgttccctgctttttattttccttccccatagAATGCACCTTTGTACTTACGCGGAGTGGCAGAACATCACCAAGAACCTAAGTGAGGACAGgtactgacccagcaccccagcctggctgagccccttatgagagctctgag Alignment from Exonerate_coding2genome AATGCACCCTTGTACTTG-GCTGAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACAG cccagccataggaaggtgtgttccctgctttttattttccttccccatagAATGCACCTTTGTACTTACGCGGAGTGGCAGAACATCACCAAGAACCTAAGTGAGGACAGgtactgacccagcaccccagcctggctgagccccttatgagagctctgag Alignment from GeneWise AATGCACCCTTGTACTTG-GCTGAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACAG cccagccataggaaggtgtgttccctgctttttattttccttccccatagAATGCACCTTTGTACTTACGCGGAGTGGCAGAACATCACCAAGAACCTAAGTGAGGACAGgtactgacccagcaccccagcctggctgagccccttatgagagctctgag #### Slit1_ID8229_10 --> 1 - 2 Original Alignment cCGCCTGGAGTTGAACGGTATCAAATCCATCCCA-CCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGat ggttgctaagggcggccctccggcttcccctgccaccttcctccctccagcCACCTGGAGTTGAATGGAATCAGATCTATCCCACCCCAGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGatgtaagagggctttggcagtctcaaaggaagagtctggggctgccttcctg Alignment from CESAR cCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCC-GGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGat ggttgctaagggcggccctccggcttcccctgccaccttcctccctccagcCACCTGGAGTTGAATGGAATCAGATCTATCCCACCCCAGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGatgtaagagggctttggcagtctcaaaggaagagtctggggctgccttcctg Alignment from Spaln_aa2Genome CCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCC-GGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT ggttgctaagggcggccctccggcttcccctgccaccttcctccctccagCCACCTGGAGTTGAATGGAATCAGATCTATCCCACCCcAGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGATgtaagagggctttggcagtctcaaaggaagagtctggggctgccttcctg Alignment from Spaln_nt2Genome CCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCG-GAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT ggttgctaagggcggccctccggcttcccctgccaccttcctccctccagCCACCTGGAGTTGAATGGAATCAGATCTATCCCACCCCAGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGATgtaagagggctttggcagtctcaaaggaagagtctggggctgccttcctg Alignment from Pairagon CCGCCTGGAGTTGAACGGTATCAAATCCATCCCA-CCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT ggttgctaagggcggccctccggcttcccctgccaccttcctccctccagCCACCTGGAGTTGAATGGAATCAGATCTATCCCACCCCAGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGATgtaagagggctttggcagtctcaaaggaagagtctggggctgccttcctg Alignment from Exonerate_protein2genome CCGCCTGGAGTTGAACGGTATCAAATCCATCCCA-CCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT ggttgctaagggcggccctccggcttcccctgccaccttcctccctccagCCACCTGGAGTTGAATGGAATCAGATCTATCCCACCCCAGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGATgtaagagggctttggcagtctcaaaggaagagtctggggctgccttcctg Alignment from Exonerate_coding2genome CCGCCTGGAGTTGAACGGTATCAAATCCATCCCA-CCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT ggttgctaagggcggccctccggcttcccctgccaccttcctccctccagCCACCTGGAGTTGAATGGAATCAGATCTATCCCACCCCAGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGATgtaagagggctttggcagtctcaaaggaagagtctggggctgccttcctg Alignment from GeneWise CCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCC-GGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT ggttgctaagggcggccctccggcttcccctgccaccttcctccctccagCCACCTGGAGTTGAATGGAATCAGATCTATCCCACCCCAGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGATgtaagagggctttggcagtctcaaaggaagagtctggggctgccttcctg #### Slit1_ID8232_7 --> 1 - 2 Original Alignment gACCCTGAACAACAACAACATCACCACCATCCCTGTG-TCCAGTTTCAACCATATGCCCAAGCTTCGGACCtt ttttgggtgtgtgctgccgggtaggtgtctggctctttctcccctgccaggACACTGAACAACAATAACATCAGCACCATCCCTGTGCTCCAGTTTCAATCATATTCCTAAGCTTCGTACTttgtatgtcaccttggccataagaagggggtgttgttgtaagttggcttgtc Alignment from CESAR gACCCTGAACAACAACAACATCACCACCATCCCTGTG-TCCAGTTTCAACCATATGCCCAAGCTTCGGACCtt ttttgggtgtgtgctgccgggtaggtgtctggctctttctcccctgccaggACACTGAACAACAATAACATCAGCACCATCCCTGTGCTCCAGTTTCAATCATATTCCTAAGCTTCGTACTttgtatgtcaccttggccataagaagggggtgttgttgtaagttggcttgtc Alignment from Spaln_aa2Genome GACCCTGAACAACAACAACATCACCACCATCCCTGTG-TCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT ttttgggtgtgtgctgccgggtaggtgtctggctctttctcccctgccagGACACTGAACAACAATAACATCAGCACCATCCCTGTGcTCCAGTTTCAATCATATTCCTAAGCTTCGTACTTTgtatgtcaccttggccataagaagggggtgttgttgtaagttggcttgtc Alignment from Spaln_nt2Genome GACCCTGAACAACAACAACATCACCACCATCCCTGTG-TCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT ttttgggtgtgtgctgccgggtaggtgtctggctctttctcccctgccagGACACTGAACAACAATAACATCAGCACCATCCCTGTGCTCCAGTTTCAATCATATTCCTAAGCTTCGTACTTTgtatgtcaccttggccataagaagggggtgttgttgtaagttggcttgtc Alignment from Pairagon GACCCTGAACAACAACAACATCACCACCATCCCTGTG-TCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT ttttgggtgtgtgctgccgggtaggtgtctggctctttctcccctgccagGACACTGAACAACAATAACATCAGCACCATCCCTGTGCTCCAGTTTCAATCATATTCCTAAGCTTCGTACTTTgtatgtcaccttggccataagaagggggtgttgttgtaagttggcttgtc Alignment from Exonerate_protein2genome GACCCTGAACAACAACAACATCACCACCATCCCTGTG-TCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT ttttgggtgtgtgctgccgggtaggtgtctggctctttctcccctgccagGACACTGAACAACAATAACATCAGCACCATCCCTGTGCTCCAGTTTCAATCATATTCCTAAGCTTCGTACTTTgtatgtcaccttggccataagaagggggtgttgttgtaagttggcttgtc Alignment from Exonerate_coding2genome GACCCTGAACAACAACAACATCACCACCATCCCTGTG-TCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT ttttgggtgtgtgctgccgggtaggtgtctggctctttctcccctgccagGACACTGAACAACAATAACATCAGCACCATCCCTGTGCTCCAGTTTCAATCATATTCCTAAGCTTCGTACTTTgtatgtcaccttggccataagaagggggtgttgttgtaagttggcttgtc Alignment from GeneWise GACCCTGAACAACAACAACATCACCACCATCCCTGTG-TCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT ttttgggtgtgtgctgccgggtaggtgtctggctctttctcccctgccagGACACTGAACAACAATAACATCAGCACCATCCCTGTGCTCCAGTTTCAATCATATTCCTAAGCTTCGTACTTTgtatgtcaccttggccataagaagggggtgttgttgtaagttggcttgtc #### Slk_ID10264_16 --> 0 - 0 Original Alignment GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAAAGT-TTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG taataagtaatctataaggaaagttagtaggacttattttcgatcttcagGAAACAGAGCAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAATAGACAGACTCAAGAGCGAGCAAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAGAAAAGTCTTGCGGATCAATTCAACAGCCACACCAGACCAGGACCATGAAAAAATTAAACAAgtattaaacagatcaatttctctttcaggatttaagactttagaatgacc Alignment from CESAR GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAAAGT-TTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG taataagtaatctataaggaaagttagtaggacttattttcgatcttcagGAAACAGAGCAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAATAGACAGACTCAAGAGCGAGCAAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAGAAAAGTCTTGCGGATCAATTCAACAGCCACACCAGACCAGGACCATGAAAAAATTAAACAAgtattaaacagatcaatttctctttcaggatttaagactttagaatgacc Alignment from Spaln_aa2Genome GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAAAGT-TTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG taataagtaatctataaggaaagttagtaggacttattttcgatcttcagGAAACAGAGCAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAATAGACAGACTCAAGAGCGAGCAAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAGAAAAGTcTTGCGGATCAATTCAACAGCCACACCAGACCAGGACCATGAAAAAATTAAACAAgtattaaacagatcaatttctctttcaggatttaagactttagaatgacc Alignment from Spaln_nt2Genome GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAAAGT-TTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG taataagtaatctataaggaaagttagtaggacttattttcgatcttcagGAAACAGAGCAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAATAGACAGACTCAAGAGCGAGCAAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAGAAAAGTCTTGCGGATCAATTCAACAGCCACACCAGACCAGGACCATGAAAAAATTAAACAAgtattaaacagatcaatttctctttcaggatttaagactttagaatgacc Alignment from Pairagon GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAAAGT-TTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG taataagtaatctataaggaaagttagtaggacttattttcgatcttcagGAAACAGAGCAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAATAGACAGACTCAAGAGCGAGCAAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAGAAAAGTCTTGCGGATCAATTCAACAGCCACACCAGACCAGGACCATGAAAAAATTAAACAAgtattaaacagatcaatttctctttcaggatttaagactttagaatgacc Alignment from Exonerate_protein2genome GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAAAGT-TTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG taataagtaatctataaggaaagttagtaggacttattttcgatcttcagGAAACAGAGCAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAATAGACAGACTCAAGAGCGAGCAAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAGAAAAGTCTTGCGGATCAATTCAACAGCCACACCAGACCAGGACCATGAAAAAATTAAACAAgtattaaacagatcaatttctctttcaggatttaagactttagaatgacc Alignment from Exonerate_coding2genome GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAAAGT-TTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG taataagtaatctataaggaaagttagtaggacttattttcgatcttcagGAAACAGAGCAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAATAGACAGACTCAAGAGCGAGCAAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAGAAAAGTCTTGCGGATCAATTCAACAGCCACACCAGACCAGGACCATGAAAAAATTAAACAAgtattaaacagatcaatttctctttcaggatttaagactttagaatgacc Alignment from GeneWise GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAAAAA-AGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG taataagtaatctataaggaaagttagtaggacttattttcgatcttcagGAAACAGAGCAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAATAGACAGACTCAAGAGCGAGCAAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAGACACGAATGGCCATGTTTAAGAAAAGTCTTGCGGATCAATTCAACAGCCACACCAGACCAGGACCATGAAAAAATTAAACAAgtattaaacagatcaatttctctttcaggatttaagactttagaatgacc #### Smc3_ID11318_6 --> 0 - 2 Original Alignment ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGAT-CAGTATTTCCTAGATAAGAAGATGGTCac agttgtccagttggccatctgggcttttactcctggtcttttcttaccagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCCAGTATTTCCTAGATAAGAAGATGGTCacgtaagtatttgtttttgctcacagtgtgttacagatgttcatgaaaacat Alignment from CESAR ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGAT-CAGTATTTCCTAGATAAGAAGATGGTCac agttgtccagttggccatctgggcttttactcctggtcttttcttaccagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCCAGTATTTCCTAGATAAGAAGATGGTCacgtaagtatttgtttttgctcacagtgtgttacagatgttcatgaaaacat Alignment from Spaln_aa2Genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGAT-CAGTATTTCCTAGATAAGAAGATGGTCAC agttgtccagttggccatctgggcttttactcctggtcttttcttaccagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATcCAGTATTTCCTAGATAAGAAGATGGTCACgtaagtatttgtttttgctcacagtgtgttacagatgttcatgaaaacat Alignment from Spaln_nt2Genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGAT-CAGTATTTCCTAGATAAGAAGATGGTCAC agttgtccagttggccatctgggcttttactcctggtcttttcttaccagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCCAGTATTTCCTAGATAAGAAGATGGTCACgtaagtatttgtttttgctcacagtgtgttacagatgttcatgaaaacat Alignment from Pairagon ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGAT-CAGTATTTCCTAGATAAGAAGATGGTCAC agttgtccagttggccatctgggcttttactcctggtcttttcttaccagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCCAGTATTTCCTAGATAAGAAGATGGTCACgtaagtatttgtttttgctcacagtgtgttacagatgttcatgaaaacat Alignment from Exonerate_protein2genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGAT-CAGTATTTCCTAGATAAGAAGATGGTCAC agttgtccagttggccatctgggcttttactcctggtcttttcttaccagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCCAGTATTTCCTAGATAAGAAGATGGTCACgtaagtatttgtttttgctcacagtgtgttacagatgttcatgaaaacat Alignment from Exonerate_coding2genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGAT-CAGTATTTCCTAGATAAGAAGATGGTCAC agttgtccagttggccatctgggcttttactcctggtcttttcttaccagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCCAGTATTTCCTAGATAAGAAGATGGTCACgtaagtatttgtttttgctcacagtgtgttacagatgttcatgaaaacat Alignment from GeneWise ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGAT-CAGTATTTCCTAGATAAGAAGATGGTCAC agttgtccagttggccatctgggcttttactcctggtcttttcttaccagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCCAGTATTTCCTAGATAAGAAGATGGTCACgtaagtatttgtttttgctcacagtgtgttacagatgttcatgaaaacat #### Smc3_ID11338_26 --> 0 - 0 Original Alignment GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGAC-CAGTTCACAGGAGTTGGGATCAGG ttatttcaggcgtagaagcatgcctaagtatattattattatcttttaagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGTCAATCTCAGGACAAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCCAGTTCACAGGAGTTGGGATCAGGgtagaaaaccctttatattcagtttttgctacagctttatcatcgaagac Alignment from CESAR GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGAC-CAGTTCACAGGAGTTGGGATCAGG ttatttcaggcgtagaagcatgcctaagtatattattattatcttttaagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGTCAATCTCAGGACAAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCCAGTTCACAGGAGTTGGGATCAGGgtagaaaaccctttatattcagtttttgctacagctttatcatcgaagac Alignment from Spaln_aa2Genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGAC-CAGTTCACAGGAGTTGGGATCAGG ttatttcaggcgtagaagcatgcctaagtatattattattatcttttaagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGTCAATCTCAGGACAAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACcCAGTTCACAGGAGTTGGGATCAGGgtagaaaaccctttatattcagtttttgctacagctttatcatcgaagac Alignment from Spaln_nt2Genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGA-CCAGTTCACAGGAGTTGGGATCAGG ttatttcaggcgtagaagcatgcctaagtatattattattatcttttaagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGTCAATCTCAGGACAAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCCAGTTCACAGGAGTTGGGATCAGGgtagaaaaccctttatattcagtttttgctacagctttatcatcgaagac Alignment from Pairagon GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGA-CCAGTTCACAGGAGTTGGGATCAGG ttatttcaggcgtagaagcatgcctaagtatattattattatcttttaagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGTCAATCTCAGGACAAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCCAGTTCACAGGAGTTGGGATCAGGgtagaaaaccctttatattcagtttttgctacagctttatcatcgaagac Alignment from Exonerate_protein2genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGAC-CAGTTCACAGGAGTTGGGATCAGG ttatttcaggcgtagaagcatgcctaagtatattattattatcttttaagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGTCAATCTCAGGACAAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCCAGTTCACAGGAGTTGGGATCAGGgtagaaaaccctttatattcagtttttgctacagctttatcatcgaagac Alignment from Exonerate_coding2genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGAC-CAGTTCACAGGAGTTGGGATCAGG ttatttcaggcgtagaagcatgcctaagtatattattattatcttttaagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGTCAATCTCAGGACAAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCCAGTTCACAGGAGTTGGGATCAGGgtagaaaaccctttatattcagtttttgctacagctttatcatcgaagac Alignment from GeneWise GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGAC-CAGTTCACAGGAGTTGGGATCAGG ttatttcaggcgtagaagcatgcctaagtatattattattatcttttaagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGTCAATCTCAGGACAAAGGAGAAGGGAGTGGAGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCCAGTTCACAGGAGTTGGGATCAGGgtagaaaaccctttatattcagtttttgctacagctttatcatcgaagac #### Snx15_ID1467_5 --> 0 - 1 Original Alignment GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAA-AGGAGGGGCCAGGAGGAGTTGGAGGTGCCAg ctcccctgccggccacattcctacccctcccctgccccgggccccctcagGGTGGAGAGGTAACACGCCCCTCTGAGGTGTCCAGGGACCTGCGTATTCTGCCACCTCCTCTCATTCCGACAACGCCTCCAGATGAGGCTCGGTTACTTCAGCCGCTGCCTGCAGAACAGGAGGGGCCAGGAAGAGTTGGAAGTGCCAggtgagtcaaggtcaggtgaggagtgagccctcctcttgtaacccttgcag Alignment from CESAR GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAA-AGGAGGGGCCAGGAGGAGTTGGAGGTGCCAg ctcccctgccggccacattcctacccctcccctgccccgggccccctcagGGTGGAGAGGTAACACGCCCCTCTGAGGTGTCCAGGGACCTGCGTATTCTGCCACCTCCTCTCATTCCGACAACGCCTCCAGATGAGGCTCGGTTACTTCAGCCGCTGCCTGCAGAACAGGAGGGGCCAGGAAGAGTTGGAAGTGCCAggtgagtcaaggtcaggtgaggagtgagccctcctcttgtaacccttgcag Alignment from Spaln_aa2Genome GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAA-AGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG ctcccctgccggccacattcctacccctcccctgccccgggccccctcagGGTGGAGAGGTAACACGCCCCTCTGAGGTGTCCAGGGACCTGCGTATTCTGCCACCTCCTCTCATTCCGACAACGCCTCCAGATGAGGCTCGGTTACTTCAGCCGCTGCCTGCAGAAcAGGAGGGGCCAGGAAGAGTTGGAAGTGCCAGgtgagtcaaggtcaggtgaggagtgagccctcctcttgtaacccttgcag Alignment from Spaln_nt2Genome GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAA-AGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG ctcccctgccggccacattcctacccctcccctgccccgggccccctcagGGTGGAGAGGTAACACGCCCCTCTGAGGTGTCCAGGGACCTGCGTATTCTGCCACCTCCTCTCATTCCGACAACGCCTCCAGATGAGGCTCGGTTACTTCAGCCGCTGCCTGCAGAACAGGAGGGGCCAGGAAGAGTTGGAAGTGCCAGgtgagtcaaggtcaggtgaggagtgagccctcctcttgtaacccttgcag Alignment from Pairagon GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAA-AGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG ctcccctgccggccacattcctacccctcccctgccccgggccccctcagGGTGGAGAGGTAACACGCCCCTCTGAGGTGTCCAGGGACCTGCGTATTCTGCCACCTCCTCTCATTCCGACAACGCCTCCAGATGAGGCTCGGTTACTTCAGCCGCTGCCTGCAGAACAGGAGGGGCCAGGAAGAGTTGGAAGTGCCAGgtgagtcaaggtcaggtgaggagtgagccctcctcttgtaacccttgcag Alignment from Exonerate_protein2genome GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAA-AGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG ctcccctgccggccacattcctacccctcccctgccccgggccccctcagGGTGGAGAGGTAACACGCCCCTCTGAGGTGTCCAGGGACCTGCGTATTCTGCCACCTCCTCTCATTCCGACAACGCCTCCAGATGAGGCTCGGTTACTTCAGCCGCTGCCTGCAGAACAGGAGGGGCCAGGAAGAGTTGGAAGTGCCAGgtgagtcaaggtcaggtgaggagtgagccctcctcttgtaacccttgcag Alignment from Exonerate_coding2genome GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCGGAA-AGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG ctcccctgccggccacattcctacccctcccctgccccgggccccctcagGGTGGAGAGGTAACACGCCCCTCTGAGGTGTCCAGGGACCTGCGTATTCTGCCACCTCCTCTCATTCCGACAACGCCTCCAGATGAGGCTCGGTTACTTCAGCCGCTGCCTGCAGAACAGGAGGGGCCAGGAAGAGTTGGAAGTGCCAGgtgagtcaaggtcaggtgaggagtgagccctcctcttgtaacccttgcag Alignment from GeneWise GGCGGGGAGGTGACACGGCCCTCTGAGGTGTCCAGGGACCTGCGAATCCTGCCACCCCCTCTCATCCCCACACCACCTCCGGATGAGGCCCGGCTACTTCAGCCGCTGCCTGCG-GAAAGGAGGGGCCAGGAGGAGTTGGAGGTGCCAG ctcccctgccggccacattcctacccctcccctgccccgggccccctcagGGTGGAGAGGTAACACGCCCCTCTGAGGTGTCCAGGGACCTGCGTATTCTGCCACCTCCTCTCATTCCGACAACGCCTCCAGATGAGGCTCGGTTACTTCAGCCGCTGCCTGCAGAACAGGAGGGGCCAGGAAGAGTTGGAAGTGCCAGgtgagtcaaggtcaggtgaggagtgagccctcctcttgtaacccttgcag #### Snx32_ID1066_12 --> 2 - 0 Original Alignment agCTCATGGACTTCAAG-TCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG ctccacccaacacccattatccatcttgtggttctgcttttgctgggcagaaCTCATGGACTTCAAGCTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCTGAGCTGGAGCTCAAGCAGGCCAAGgtaagtgatcactgcctgctccatcatgaagttgctcctgcctacttccc Alignment from CESAR agCTCATGGACTTCAAG-TCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG ctccacccaacacccattatccatcttgtggttctgcttttgctgggcagaaCTCATGGACTTCAAGCTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCTGAGCTGGAGCTCAAGCAGGCCAAGgtaagtgatcactgcctgctccatcatgaagttgctcctgcctacttccc Alignment from Spaln_aa2Genome AGCTCATGGACTTCAAG-TCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG ctccacccaacacccattatccatcttgtggttctgcttttgctgggcagAACTCATGGACTTCAAGcTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCTGAGCTGGAGCTCAAGCAGGCCAAGgtaagtgatcactgcctgctccatcatgaagttgctcctgcctacttccc Alignment from Spaln_nt2Genome AGCTCATGGACTTCAAG-TCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG ctccacccaacacccattatccatcttgtggttctgcttttgctgggcagAACTCATGGACTTCAAGCTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCTGAGCTGGAGCTCAAGCAGGCCAAGgtaagtgatcactgcctgctccatcatgaagttgctcctgcctacttccc Alignment from Pairagon AGCTCATGGACTTCAAG-TCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG ctccacccaacacccattatccatcttgtggttctgcttttgctgggcagAACTCATGGACTTCAAGCTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCTGAGCTGGAGCTCAAGCAGGCCAAGgtaagtgatcactgcctgctccatcatgaagttgctcctgcctacttccc Alignment from Exonerate_protein2genome AGCTCATGGACTTCAAG-TCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG ctccacccaacacccattatccatcttgtggttctgcttttgctgggcagAACTCATGGACTTCAAGCTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCTGAGCTGGAGCTCAAGCAGGCCAAGgtaagtgatcactgcctgctccatcatgaagttgctcctgcctacttccc Alignment from Exonerate_coding2genome AGCTCATGGACTTCAAG-TCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG ctccacccaacacccattatccatcttgtggttctgcttttgctgggcagAACTCATGGACTTCAAGCTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCTGAGCTGGAGCTCAAGCAGGCCAAGgtaagtgatcactgcctgctccatcatgaagttgctcctgcctacttccc Alignment from GeneWise AGCTCATGGACTTCAAG-TCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAG ctccacccaacacccattatccatcttgtggttctgcttttgctgggcagAACTCATGGACTTCAAGCTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCTGAGCTGGAGCTCAAGCAGGCCAAGgtaagtgatcactgcctgctccatcatgaagttgctcctgcctacttccc #### Snx32_ID1067_11 --> 0 - 1 Original Alignment GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGC---CAGCGCTTC-GAGCGCCTCTCTGACTCCGCCAAACAAg caacatccatgacaaaatgtgtcttgctctcctgctctcttgctttctagGACCTATTGTACCGGCGGCTCCGGGCACTGGCTGACTACGAGAATGCTAACAAAGCACTGGACAAAGCTCGGACTAGGAACCGTGAAGTATGGCCAGCAGAGAGCCGCCAGCAGCTGTGCTGCCAGCAGCGCTTTCGAGCGCCTCTCTGACTCTGCCAAACAAggtactgcctgaaagattgcaacactccacccaacacccattatccatctt Alignment from CESAR GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGC---CAGCGC-TTCGAGCGCCTCTCTGACTCCGCCAAACAAg caacatccatgacaaaatgtgtcttgctctcctgctctcttgctttctagGACCTATTGTACCGGCGGCTCCGGGCACTGGCTGACTACGAGAATGCTAACAAAGCACTGGACAAAGCTCGGACTAGGAACCGTGAAGTATGGCCAGCAGAGAGCCGCCAGCAGCTGTGCTGCCAGCAGCGCTTTCGAGCGCCTCTCTGACTCTGCCAAACAAggtactgcctgaaagattgcaacactccacccaacacccattatccatctt Alignment from Spaln_aa2Genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGC----TTCGAGCGCCTCTCTGACTCCGCCAAACAAG caacatccatgacaaaatgtgtcttgctctcctgctctcttgctttctagGACCTATTGTACCGGCGGCTCCGGGCACTGGCTGACTACGAGAATGCTAACAAAGCACTGGACAAAGCTCGGACTAGGAACCGTGAAGTATGGCCAGCAGAGAGCCGCCAGCAGCTGTGCTGCCAGCAGCGCtTTCGAGCGCCTCTCTGACTCTGCCAAACAAGgtactgcctgaaagattgcaacactccacccaacacccattatccatctt Alignment from Spaln_nt2Genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGC---GCTT-CGAGCGCCTCTCTGACTCCGCCAAACAAG caacatccatgacaaaatgtgtcttgctctcctgctctcttgctttctagGACCTATTGTACCGGCGGCTCCGGGCACTGGCTGACTACGAGAATGCTAACAAAGCACTGGACAAAGCTCGGACTAGGAACCGTGAAGTATGGCCAGCAGAGAGCCGCCAGCAGCTGTGCTGCCAGCAGCGCTTTCGAGCGCCTCTCTGACTCTGCCAAACAAGgtactgcctgaaagattgcaacactccacccaacacccattatccatctt Alignment from Pairagon GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCG----CTTCGAGCGCCTCTCTGACTCCGCCAAACAAG caacatccatgacaaaatgtgtcttgctctcctgctctcttgctttctagGACCTATTGTACCGGCGGCTCCGGGCACTGGCTGACTACGAGAATGCTAACAAAGCACTGGACAAAGCTCGGACTAGGAACCGTGAAGTATGGCCAGCAGAGAGCCGCCAGCAGCTGTGCTGCCAGCAGCGCTTTCGAGCGCCTCTCTGACTCTGCCAAACAAGgtactgcctgaaagattgcaacactccacccaacacccattatccatctt Alignment from Exonerate_protein2genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGC----TTCGAGCGCCTCTCTGACTCCGCCAAACAAG caacatccatgacaaaatgtgtcttgctctcctgctctcttgctttctagGACCTATTGTACCGGCGGCTCCGGGCACTGGCTGACTACGAGAATGCTAACAAAGCACTGGACAAAGCTCGGACTAGGAACCGTGAAGTATGGCCAGCAGAGAGCCGCCAGCAGCTGTGCTGCCAGCAGCGCTTTCGAGCGCCTCTCTGACTCTGCCAAACAAGgtactgcctgaaagattgcaacactccacccaacacccattatccatctt Alignment from Exonerate_coding2genome GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGC----TTCGAGCGCCTCTCTGACTCCGCCAAACAAG caacatccatgacaaaatgtgtcttgctctcctgctctcttgctttctagGACCTATTGTACCGGCGGCTCCGGGCACTGGCTGACTACGAGAATGCTAACAAAGCACTGGACAAAGCTCGGACTAGGAACCGTGAAGTATGGCCAGCAGAGAGCCGCCAGCAGCTGTGCTGCCAGCAGCGCTTTCGAGCGCCTCTCTGACTCTGCCAAACAAGgtactgcctgaaagattgcaacactccacccaacacccattatccatctt Alignment from GeneWise GACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAAAGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGC------TTCGAGCGCCTCTCTGACTCCGCCAAACAAG caacatccatgacaaaatgtgtcttgctctcctgctctcttgctttctagGACCTATTGTACCGGCGGCTCCGGGCACTGGCTGACTACGAGAATGCTAACAAAGCACTGGACAAAGCTCGGACTAGGAACCGTGAAGTATGGCCAGCAGAGAGCCGCCAGCAGCTGTGCTGCCAGCAGCGCT--TTCGAGCGCCTCTCTGACTCTGCCAAACAAGgtactgcctgaaagattgcaacactccacccaacacccattatccatctt #### Snx32_ID1068_10 --> 0 - 0 Original Alignment AAACTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATG-CGAGACTCACAGGCAGCCAAG aggaaagactaccaaccctctaggttctctaacaattgccttgtgttcagAAATTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCCGAGACTCACAGGCAGCCAAGgtagatggcagcctaggaaacctgagcattgaaccatgtggacagtcatc Alignment from CESAR AAACTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATG-CGAGACTCACAGGCAGCCAAG aggaaagactaccaaccctctaggttctctaacaattgccttgtgttcagAAATTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCCGAGACTCACAGGCAGCCAAGgtagatggcagcctaggaaacctgagcattgaaccatgtggacagtcatc Alignment from Spaln_aa2Genome AAACTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATG-CGAGACTCACAGGCAGCCAAG aggaaagactaccaaccctctaggttctctaacaattgccttgtgttcagAAATTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGcCGAGACTCACAGGCAGCCAAGgtagatggcagcctaggaaacctgagcattgaaccatgtggacagtcatc Alignment from Spaln_nt2Genome AAACTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATG-CGAGACTCACAGGCAGCCAAG aggaaagactaccaaccctctaggttctctaacaattgccttgtgttcagAAATTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCCGAGACTCACAGGCAGCCAAGgtagatggcagcctaggaaacctgagcattgaaccatgtggacagtcatc Alignment from Pairagon AAACTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATG-CGAGACTCACAGGCAGCCAAG aggaaagactaccaaccctctaggttctctaacaattgccttgtgttcagAAATTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCCGAGACTCACAGGCAGCCAAGgtagatggcagcctaggaaacctgagcattgaaccatgtggacagtcatc Alignment from Exonerate_protein2genome AAACTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATG-CGAGACTCACAGGCAGCCAAG aggaaagactaccaaccctctaggttctctaacaattgccttgtgttcagAAATTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCCGAGACTCACAGGCAGCCAAGgtagatggcagcctaggaaacctgagcattgaaccatgtggacagtcatc Alignment from Exonerate_coding2genome AAACTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATG-CGAGACTCACAGGCAGCCAAG aggaaagactaccaaccctctaggttctctaacaattgccttgtgttcagAAATTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCCGAGACTCACAGGCAGCCAAGgtagatggcagcctaggaaacctgagcattgaaccatgtggacagtcatc Alignment from GeneWise AAACTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATG-CGAGACTCACAGGCAGCCAAG aggaaagactaccaaccctctaggttctctaacaattgccttgtgttcagAAATTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCCGAGACTCACAGGCAGCCAAGgtagatggcagcctaggaaacctgagcattgaaccatgtggacagtcatc #### Snx32_ID1071_7 --> 0 - 1 Original Alignment GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGG-GCCGACCGTGTTATGCACTCCCACAAGt actgcaccacacctaatacctggataaatattttactttttttgtttcagGAGGTAGATGACTTCTTTGAGCATGAGAGGACCTTCCTAGTGGAATATCACACCCGAATCCGGGACACCTGCCAGAGGCGCAGACCGTGTGATGCACTCCCACAAGtgtaagtcacacctgaggctccacacgatgggtggcgcctggtgtgcacat Alignment from CESAR GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGG-GCCGACCGTGTTATGCACTCCCACAAGt actgcaccacacctaatacctggataaatattttactttttttgtttcagGAGGTAGATGACTTCTTTGAGCATGAGAGGACCTTCCTAGTGGAATATCACACCCGAATCCGGGACACCTGCCAGAGGCGCAGACCGTGTGATGCACTCCCACAAGtgtaagtcacacctgaggctccacacgatgggtggcgcctggtgtgcacat Alignment from Spaln_aa2Genome GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGG-GCCGACCGTGTTATGCACTCCCACAAGT actgcaccacacctaatacctggataaatattttactttttttgtttcagGAGGTAGATGACTTCTTTGAGCATGAGAGGACCTTCCTAGTGGAATATCACACCCGAATCCGGGACACCTGCCAGAGGcGCAGACCGTGTGATGCACTCCCACAAGTgtaagtcacacctgaggctccacacgatgggtggcgcctggtgtgcacat Alignment from Spaln_nt2Genome GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGG-GCCGACCGTGTTATGCACTCCCACAAGT actgcaccacacctaatacctggataaatattttactttttttgtttcagGAGGTAGATGACTTCTTTGAGCATGAGAGGACCTTCCTAGTGGAATATCACACCCGAATCCGGGACACCTGCCAGAGGCGCAGACCGTGTGATGCACTCCCACAAGTgtaagtcacacctgaggctccacacgatgggtggcgcctggtgtgcacat Alignment from Pairagon GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGG-GCCGACCGTGTTATGCACTCCCACAAGT actgcaccacacctaatacctggataaatattttactttttttgtttcagGAGGTAGATGACTTCTTTGAGCATGAGAGGACCTTCCTAGTGGAATATCACACCCGAATCCGGGACACCTGCCAGAGGCGCAGACCGTGTGATGCACTCCCACAAGTgtaagtcacacctgaggctccacacgatgggtggcgcctggtgtgcacat Alignment from Exonerate_protein2genome GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGG-GCCGACCGTGTTATGCACTCCCACAAGT actgcaccacacctaatacctggataaatattttactttttttgtttcagGAGGTAGATGACTTCTTTGAGCATGAGAGGACCTTCCTAGTGGAATATCACACCCGAATCCGGGACACCTGCCAGAGGCGCAGACCGTGTGATGCACTCCCACAAGTgtaagtcacacctgaggctccacacgatgggtggcgcctggtgtgcacat Alignment from Exonerate_coding2genome GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGG-GCCGACCGTGTTATGCACTCCCACAAGT actgcaccacacctaatacctggataaatattttactttttttgtttcagGAGGTAGATGACTTCTTTGAGCATGAGAGGACCTTCCTAGTGGAATATCACACCCGAATCCGGGACACCTGCCAGAGGCGCAGACCGTGTGATGCACTCCCACAAGTgtaagtcacacctgaggctccacacgatgggtggcgcctggtgtgcacat Alignment from GeneWise GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGG-GCCGACCGTGTTATGCACTCCCACAAGTGC------------------------------------------------ actgcaccacacctaatacctggataaatattttactttttttgtttcagGAGGTAGATGACTTCTTTGAGCATGAGAGGACCTTCCTAGTGGAATATCACACCCGAATCCGGGACACCTGCCAGAGGCGCAGACCGTGTGATGCACTCCCACAAGTGTAAGTCACACCTGAGGCTCCACACGATGGGTGGCGCCTGGTGTGCACAT #### Snx32_ID1072_6 --> 0 - 0 Original Alignment CTGAGTGTTCGAGAGAAGAACAGGAAG-GAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acgacaccacccagtgtacccaagcatcaatgccctcttcctctctccagCTGAGTGTCCGGGAAAAGAACAGGAAGCGAAGTATTGGGGGGGCTCCTGAGAAGCATTGTCAGGTCTGCAGACGAAATCCTCATCACCGGTGGCATATCAGGGCTCAAGgtttgtcttatcctttctgtggcaggagacccatgaacacagcaggcgcc Alignment from CESAR CTGAGTGTTCGAGAGAAGAACAGGAAG-GAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acgacaccacccagtgtacccaagcatcaatgccctcttcctctctccagCTGAGTGTCCGGGAAAAGAACAGGAAGCGAAGTATTGGGGGGGCTCCTGAGAAGCATTGTCAGGTCTGCAGACGAAATCCTCATCACCGGTGGCATATCAGGGCTCAAGgtttgtcttatcctttctgtggcaggagacccatgaacacagcaggcgcc Alignment from Spaln_aa2Genome CTGAGTGTTCGAGAGAAGAACAGGAAG-GAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acgacaccacccagtgtacccaagcatcaatgccctcttcctctctccagCTGAGTGTCCGGGAAAAGAACAGGAAGcGAAGTATTGGGGGGGCTCCTGAGAAGCATTGTCAGGTCTGCAGACGAAATCCTCATCACCGGTGGCATATCAGGGCTCAAGgtttgtcttatcctttctgtggcaggagacccatgaacacagcaggcgcc Alignment from Spaln_nt2Genome CTGAGTGTTCGAGAGAAGAACAGGAAG-GAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acgacaccacccagtgtacccaagcatcaatgccctcttcctctctccagCTGAGTGTCCGGGAAAAGAACAGGAAGCGAAGTATTGGGGGGGCTCCTGAGAAGCATTGTCAGGTCTGCAGACGAAATCCTCATCACCGGTGGCATATCAGGGCTCAAGgtttgtcttatcctttctgtggcaggagacccatgaacacagcaggcgcc Alignment from Pairagon CTGAGTGTTCGAGAGAAGAACAGGAAG-GAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acgacaccacccagtgtacccaagcatcaatgccctcttcctctctccagCTGAGTGTCCGGGAAAAGAACAGGAAGCGAAGTATTGGGGGGGCTCCTGAGAAGCATTGTCAGGTCTGCAGACGAAATCCTCATCACCGGTGGCATATCAGGGCTCAAGgtttgtcttatcctttctgtggcaggagacccatgaacacagcaggcgcc Alignment from Exonerate_protein2genome CTGAGTGTTCGAGAGAAGAACAGGAAG-GAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acgacaccacccagtgtacccaagcatcaatgccctcttcctctctccagCTGAGTGTCCGGGAAAAGAACAGGAAGCGAAGTATTGGGGGGGCTCCTGAGAAGCATTGTCAGGTCTGCAGACGAAATCCTCATCACCGGTGGCATATCAGGGCTCAAGgtttgtcttatcctttctgtggcaggagacccatgaacacagcaggcgcc Alignment from Exonerate_coding2genome CTGAGTGTTCGAGAGAAGAACAGGAAG-GAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acgacaccacccagtgtacccaagcatcaatgccctcttcctctctccagCTGAGTGTCCGGGAAAAGAACAGGAAGCGAAGTATTGGGGGGGCTCCTGAGAAGCATTGTCAGGTCTGCAGACGAAATCCTCATCACCGGTGGCATATCAGGGCTCAAGgtttgtcttatcctttctgtggcaggagacccatgaacacagcaggcgcc Alignment from GeneWise CTGAGTGTTCGAGAGAAGAACAGG-AAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACCGGC---ATATCAGGGCTCAAG acgacaccacccagtgtacccaagcatcaatgccctcttcctctctccagCTGAGTGTCCGGGAAAAGAACAGGAAGCGAAGTATTGGGGGGGCTCCTGAGAAGCATTGTCAGGTCTGCAGACGAAATCCTCATCACCGGTGGCATATCAGGGCTCAAGgtttgtcttatcctttctgtggcaggagacccatgaacacagcaggcgcc #### Snx32_ID1075_3 --> 0 - 0 Original Alignment AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATC-TGGCTACATGACACCTATGTGGAAAACGAA------GAGTACGCCGGCCTCATC aaggcagctttgggtaagaagggatcacttgagctggttgtgttttatagAGTGGCCTCCCTCACTCTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCATGAAGAGTTCATCCTGGCTACATGACACCTATGTAGAAAACGAAGAGTATGAATACACCAGCCTCATTgtagagagcagcagggcagagctggggtgttaggaatatggataaggatg Alignment from CESAR AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATC-TGGCTACATGACACCTATGTGGAAAACGAAGAG------TACGCCGGCCTCATC aaggcagctttgggtaagaagggatcacttgagctggttgtgttttatagAGTGGCCTCCCTCACTCTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCATGAAGAGTTCATCCTGGCTACATGACACCTATGTAGAAAACGAAGAGTATGAATACACCAGCCTCATTgtagagagcagcagggcagagctggggtgttaggaatatggataaggatg Alignment from Spaln_aa2Genome AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATC-TGGCTACATGACACCTATGTGGAAAACGAA------GAGTACGCCGGCCTCATC aaggcagctttgggtaagaagggatcacttgagctggttgtgttttatagAGTGGCCTCCCTCACTCTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCATGAAGAGTTCATCcTGGCTACATGACACCTATGTAGAAAACGAAGAGTATGAATACACCAGCCTCATTgtagagagcagcagggcagagctggggtgttaggaatatggataaggatg Alignment from Spaln_nt2Genome AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCAT-CTGGCTACATGACACCTATGTGGAAAACGAAGAGTACG------CCGGCCTCATC aaggcagctttgggtaagaagggatcacttgagctggttgtgttttatagAGTGGCCTCCCTCACTCTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCATGAAGAGTTCATCCTGGCTACATGACACCTATGTAGAAAACGAAGAGTATGAATACACCAGCCTCATTgtagagagcagcagggcagagctggggtgttaggaatatggataaggatg Alignment from Pairagon AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCAT-CTGGCTACATGACACCTATGTGGAAAACGAAGAGTACG------CCGGCCTCATC aaggcagctttgggtaagaagggatcacttgagctggttgtgttttatagAGTGGCCTCCCTCACTCTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCATGAAGAGTTCATCCTGGCTACATGACACCTATGTAGAAAACGAAGAGTATGAATACACCAGCCTCATTgtagagagcagcagggcagagctggggtgttaggaatatggataaggatg Alignment from Exonerate_protein2genome AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATC-TGGCTACATGACACCTATGTGGAAAACGAA------GAGTACGCCGGCCTCATC aaggcagctttgggtaagaagggatcacttgagctggttgtgttttatagAGTGGCCTCCCTCACTCTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCATGAAGAGTTCATCCTGGCTACATGACACCTATGTAGAAAACGAAGAGTATGAATACACCAGCCTCATTgtagagagcagcagggcagagctggggtgttaggaatatggataaggatg Alignment from Exonerate_coding2genome AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATC-TGGCTACATGACACCTATGTGGAAAACGAA------GAGTACGCCGGCCTCATC aaggcagctttgggtaagaagggatcacttgagctggttgtgttttatagAGTGGCCTCCCTCACTCTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCATGAAGAGTTCATCCTGGCTACATGACACCTATGTAGAAAACGAAGAGTATGAATACACCAGCCTCATTgtagagagcagcagggcagagctggggtgttaggaatatggataaggatg Alignment from GeneWise AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTC-ATCTGGCTACATGACACCTATGTGGAAAACGAAGAGTAC------GCCGGCCTCATC aaggcagctttgggtaagaagggatcacttgagctggttgtgttttatagAGTGGCCTCCCTCACTCTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCATGAAGAGTTCATCCTGGCTACATGACACCTATGTAGAAAACGAAGAGTATGAATACACCAGCCTCATTgtagagagcagcagggcagagctggggtgttaggaatatggataaggatg #### Sptbn2_ID626_21 --> 0 - 0 Original Alignment TTGTGGGTGACTGAGCGGCTTCCCATGGCCAGCTCTCTG-GAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG gctagacaggtgctgtttgtggctctatcagactcttatttcccctacagTTGTGGGTGACAGAGCGGCTTCCTATGGCCAGCTCTCTGCGAACATGGGAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAAAAAAACCAGgtgagtccaagggcaagagcgcaaacagagttcaaaagagcattttaata Alignment from CESAR TTGTGGGTGACTGAGCGGCTTCCCATGGCCAGCTCTCTG-GAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG gctagacaggtgctgtttgtggctctatcagactcttatttcccctacagTTGTGGGTGACAGAGCGGCTTCCTATGGCCAGCTCTCTGCGAACATGGGAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAAAAAAACCAGgtgagtccaagggcaagagcgcaaacagagttcaaaagagcattttaata Alignment from Spaln_aa2Genome TTGTGGGTGACTGAGCGGCTTCCCATGGCCAGCTCTCTG-GAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG gctagacaggtgctgtttgtggctctatcagactcttatttcccctacagTTGTGGGTGACAGAGCGGCTTCCTATGGCCAGCTCTCTGcGAACATGGGAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAAAAAAACCAGgtgagtccaagggcaagagcgcaaacagagttcaaaagagcattttaata Alignment from Spaln_nt2Genome TTGTGGGTGACTGAGCGGCTTCCCATGGCCAGCTCTCTG-GAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG gctagacaggtgctgtttgtggctctatcagactcttatttcccctacagTTGTGGGTGACAGAGCGGCTTCCTATGGCCAGCTCTCTGCGAACATGGGAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAAAAAAACCAGgtgagtccaagggcaagagcgcaaacagagttcaaaagagcattttaata Alignment from Pairagon TTGTGGGTGACTGAGCGGCTTCCCATGGCCAGCTCTCTG-GAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG gctagacaggtgctgtttgtggctctatcagactcttatttcccctacagTTGTGGGTGACAGAGCGGCTTCCTATGGCCAGCTCTCTGCGAACATGGGAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAAAAAAACCAGgtgagtccaagggcaagagcgcaaacagagttcaaaagagcattttaata Alignment from Exonerate_protein2genome TTGTGGGTGACTGAGCGGCTTCCCATGGCCAGCTCTCTG-GAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG gctagacaggtgctgtttgtggctctatcagactcttatttcccctacagTTGTGGGTGACAGAGCGGCTTCCTATGGCCAGCTCTCTGCGAACATGGGAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAAAAAAACCAGgtgagtccaagggcaagagcgcaaacagagttcaaaagagcattttaata Alignment from Exonerate_coding2genome TTGTGGGTGACTGAGCGGCTTCCCATGGCCAGCTCTCTG-GAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG gctagacaggtgctgtttgtggctctatcagactcttatttcccctacagTTGTGGGTGACAGAGCGGCTTCCTATGGCCAGCTCTCTGCGAACATGGGAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAAAAAAACCAGgtgagtccaagggcaagagcgcaaacagagttcaaaagagcattttaata Alignment from GeneWise TTGTGGGTGACTGAGCGGCTTCCCATGGCCAGCTCT-CTGGAACATGGCAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAGAAAAACCAG gctagacaggtgctgtttgtggctctatcagactcttatttcccctacagTTGTGGGTGACAGAGCGGCTTCCTATGGCCAGCTCTCTGCGAACATGGGAAGGACTTGCCCAGTGTCCAGCTTCTCATGAAAAAAAACCAGgtgagtccaagggcaagagcgcaaacagagttcaaaagagcattttaata #### Sptbn2_ID627_22 --> 0 - 0 Original Alignment ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATG-TGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccctttgtgagcctttcattgttctttttgttccacattgtagACCCTGCAGAAGGAGATCCAGGGCCACGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAACGCACTTTGAGGACGGCTGCAGCAGGCCCAGAGTTAGCTAATCTCCAGGAAATGCTGGAAACGCCTGAGCTATGAGTTGGAGCTCCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCTCAGCAATTCTATCGAGATGCTGCAAAGGCTGAGGCCTGGATGGGTGATCGGGAGTTACACATGATGGGCCAGGAAAGGGCCAAGgtaagcgttgaggaatggctgtcttgctgcccattctcttactcccaagc Alignment from CESAR ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATG-TGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccctttgtgagcctttcattgttctttttgttccacattgtagACCCTGCAGAAGGAGATCCAGGGCCACGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAACGCACTTTGAGGACGGCTGCAGCAGGCCCAGAGTTAGCTAATCTCCAGGAAATGCTGGAAACGCCTGAGCTATGAGTTGGAGCTCCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCTCAGCAATTCTATCGAGATGCTGCAAAGGCTGAGGCCTGGATGGGTGATCGGGAGTTACACATGATGGGCCAGGAAAGGGCCAAGgtaagcgttgaggaatggctgtcttgctgcccattctcttactcccaagc Alignment from Spaln_aa2Genome ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATG-TGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccctttgtgagcctttcattgttctttttgttccacattgtagACCCTGCAGAAGGAGATCCAGGGCCACGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAACGCACTTTGAGGACGGCTGCAGCAGGCCCAGAGTTAGCTAATCTCCAGGAAATGcTGGAAACGCCTGAGCTATGAGTTGGAGCTCCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCTCAGCAATTCTATCGAGATGCTGCAAAGGCTGAGGCCTGGATGGGTGATCGGGAGTTACACATGATGGGCCAGGAAAGGGCCAAGgtaagcgttgaggaatggctgtcttgctgcccattctcttactcccaagc Alignment from Spaln_nt2Genome ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATG-TGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccctttgtgagcctttcattgttctttttgttccacattgtagACCCTGCAGAAGGAGATCCAGGGCCACGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAACGCACTTTGAGGACGGCTGCAGCAGGCCCAGAGTTAGCTAATCTCCAGGAAATGCTGGAAACGCCTGAGCTATGAGTTGGAGCTCCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCTCAGCAATTCTATCGAGATGCTGCAAAGGCTGAGGCCTGGATGGGTGATCGGGAGTTACACATGATGGGCCAGGAAAGGGCCAAGgtaagcgttgaggaatggctgtcttgctgcccattctcttactcccaagc Alignment from Pairagon ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATG-TGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccctttgtgagcctttcattgttctttttgttccacattgtagACCCTGCAGAAGGAGATCCAGGGCCACGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAACGCACTTTGAGGACGGCTGCAGCAGGCCCAGAGTTAGCTAATCTCCAGGAAATGCTGGAAACGCCTGAGCTATGAGTTGGAGCTCCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCTCAGCAATTCTATCGAGATGCTGCAAAGGCTGAGGCCTGGATGGGTGATCGGGAGTTACACATGATGGGCCAGGAAAGGGCCAAGgtaagcgttgaggaatggctgtcttgctgcccattctcttactcccaagc Alignment from Exonerate_protein2genome ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATG-TGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccctttgtgagcctttcattgttctttttgttccacattgtagACCCTGCAGAAGGAGATCCAGGGCCACGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAACGCACTTTGAGGACGGCTGCAGCAGGCCCAGAGTTAGCTAATCTCCAGGAAATGCTGGAAACGCCTGAGCTATGAGTTGGAGCTCCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCTCAGCAATTCTATCGAGATGCTGCAAAGGCTGAGGCCTGGATGGGTGATCGGGAGTTACACATGATGGGCCAGGAAAGGGCCAAGgtaagcgttgaggaatggctgtcttgctgcccattctcttactcccaagc Alignment from Exonerate_coding2genome ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAAATG-TGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccctttgtgagcctttcattgttctttttgttccacattgtagACCCTGCAGAAGGAGATCCAGGGCCACGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAACGCACTTTGAGGACGGCTGCAGCAGGCCCAGAGTTAGCTAATCTCCAGGAAATGCTGGAAACGCCTGAGCTATGAGTTGGAGCTCCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCTCAGCAATTCTATCGAGATGCTGCAAAGGCTGAGGCCTGGATGGGTGATCGGGAGTTACACATGATGGGCCAGGAAAGGGCCAAGgtaagcgttgaggaatggctgtcttgctgcccattctcttactcccaagc Alignment from GeneWise ACCCTGCAGAAGGAGATCCAGGGCCATGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAGCGCACTCTGGGAACAGCAGCAGCAGGTCCAGAGCTGGCTGAGCTCCAAGAA-ATGTGGAAACGCCTGAGCCATGAGCTGGAGCTTCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCCCAGCAATTCTATCGTGATGCTGCAGAGGCCGAGGCTTGGATGGGTGAGCAGGAGTTACACATGATGGGCCAGGAAAAGGCCAAG ttcagttccctttgtgagcctttcattgttctttttgttccacattgtagACCCTGCAGAAGGAGATCCAGGGCCACGAGCCCCGGATTGCAGACCTCAAAGAGAGGCAACGCACTTTGAGGACGGCTGCAGCAGGCCCAGAGTTAGCTAATCTCCAGGAAATGCTGGAAACGCCTGAGCTATGAGTTGGAGCTCCGGGGCAAGCGGCTGGAGGAAGCTCTTCGAGCTCAGCAATTCTATCGAGATGCTGCAAAGGCTGAGGCCTGGATGGGTGATCGGGAGTTACACATGATGGGCCAGGAAAGGGCCAAGgtaagcgttgaggaatggctgtcttgctgcccattctcttactcccaagc #### Sptbn2_ID628_23 --> 0 - 2 Original Alignment GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCC-CTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGag tcttactcccaagcacctgaagtctggaccatatttccaaaacccaatagGACGAGCTGAGCGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAACAAGCCCCTTGCTGATTATGCCCAGACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGaggtcagggtgtgagtatcatgtgccttagctgcatagaattgaaagctgtg Alignment from CESAR GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCC-CTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGag tcttactcccaagcacctgaagtctggaccatatttccaaaacccaatagGACGAGCTGAGCGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAACAAGCCCCTTGCTGATTATGCCCAGACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGaggtcagggtgtgagtatcatgtgccttagctgcatagaattgaaagctgtg Alignment from Spaln_aa2Genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCC-CTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG tcttactcccaagcacctgaagtctggaccatatttccaaaacccaatagGACGAGCTGAGCGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAACAAGCCcCTTGCTGATTATGCCCAGACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtcagggtgtgagtatcatgtgccttagctgcatagaattgaaagctgtg Alignment from Spaln_nt2Genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAG-CCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG tcttactcccaagcacctgaagtctggaccatatttccaaaacccaatagGACGAGCTGAGCGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAACAAGCCCCTTGCTGATTATGCCCAGACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtcagggtgtgagtatcatgtgccttagctgcatagaattgaaagctgtg Alignment from Pairagon GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAG-CCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG tcttactcccaagcacctgaagtctggaccatatttccaaaacccaatagGACGAGCTGAGCGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAACAAGCCCCTTGCTGATTATGCCCAGACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtcagggtgtgagtatcatgtgccttagctgcatagaattgaaagctgtg Alignment from Exonerate_protein2genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCC-CTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG tcttactcccaagcacctgaagtctggaccatatttccaaaacccaatagGACGAGCTGAGCGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAACAAGCCCCTTGCTGATTATGCCCAGACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtcagggtgtgagtatcatgtgccttagctgcatagaattgaaagctgtg Alignment from Exonerate_coding2genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCC-CTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG tcttactcccaagcacctgaagtctggaccatatttccaaaacccaatagGACGAGCTGAGCGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAACAAGCCCCTTGCTGATTATGCCCAGACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtcagggtgtgagtatcatgtgccttagctgcatagaattgaaagctgtg Alignment from GeneWise GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAA-GCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG tcttactcccaagcacctgaagtctggaccatatttccaaaacccaatagGACGAGCTGAGCGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAACAAGCCCCTTGCTGATTATGCCCAGACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtcagggtgtgagtatcatgtgccttagctgcatagaattgaaagctgtg #### Sptbn2_ID633_28 --> 0 - 1 Original Alignment ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATG-GACTGGCTACAGCTTg gacaaaatggtagagccccattactcattcttctgctgtgtttctgaaagATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGCGACTGGCTACAACTTggtgagctacttagcaatgtcacaggaggtagcggtcttgtgagggtgtac Alignment from CESAR ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATG-GACTGGCTACAGCTTg gacaaaatggtagagccccattactcattcttctgctgtgtttctgaaagATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGCGACTGGCTACAACTTggtgagctacttagcaatgtcacaggaggtagcggtcttgtgagggtgtac Alignment from Spaln_aa2Genome ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATG-GACTGGCTACAGCTTG gacaaaatggtagagccccattactcattcttctgctgtgtttctgaaagATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGcGACTGGCTACAACTTGgtgagctacttagcaatgtcacaggaggtagcggtcttgtgagggtgtac Alignment from Spaln_nt2Genome ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATG-GACTGGCTACAGCTTG gacaaaatggtagagccccattactcattcttctgctgtgtttctgaaagATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGCGACTGGCTACAACTTGgtgagctacttagcaatgtcacaggaggtagcggtcttgtgagggtgtac Alignment from Pairagon ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATG-GACTGGCTACAGCTTG gacaaaatggtagagccccattactcattcttctgctgtgtttctgaaagATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGCGACTGGCTACAACTTGgtgagctacttagcaatgtcacaggaggtagcggtcttgtgagggtgtac Alignment from Exonerate_protein2genome ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATG-GACTGGCTACAGCTTG gacaaaatggtagagccccattactcattcttctgctgtgtttctgaaagATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGCGACTGGCTACAACTTGgtgagctacttagcaatgtcacaggaggtagcggtcttgtgagggtgtac Alignment from Exonerate_coding2genome ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATG-GACTGGCTACAGCTTG gacaaaatggtagagccccattactcattcttctgctgtgtttctgaaagATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGCGACTGGCTACAACTTGgtgagctacttagcaatgtcacaggaggtagcggtcttgtgagggtgtac Alignment from GeneWise ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAG-ATGGACTGGCTACAGCTTG gacaaaatggtagagccccattactcattcttctgctgtgtttctgaaagATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGCGACTGGCTACAACTTGgtgagctacttagcaatgtcacaggaggtagcggtcttgtgagggtgtac #### Sptbn2_ID636_31 --> 1 - 0 Original Alignment gACTCAGTCAAAATTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTC-TGCACGGACACCGACTCCTCACAG cccaagccagccaccggttaatgatcctctagtgtctgattcctccataggACTCAGTCAAAATTGCCACCATCAACACAAGCACCCAGTGTTAATGGGGTCCTGCACAGACACTGACTCCTCACAGgtgacctcatcttgacagacatccctttcaactcagccagcatctggatc Alignment from CESAR gACTCAGTCAAAATTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTC-TGCACGGACACCGACTCCTCACAG cccaagccagccaccggttaatgatcctctagtgtctgattcctccataggACTCAGTCAAAATTGCCACCATCAACACAAGCACCCAGTGTTAATGGGGTCCTGCACAGACACTGACTCCTCACAGgtgacctcatcttgacagacatccctttcaactcagccagcatctggatc Alignment from Spaln_aa2Genome GACTCAGTCAAAATTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTC-TGCACGGACACCGACTCCTCACAG cccaagccagccaccggttaatgatcctctagtgtctgattcctccatagGACTCAGTCAAAATTGCCACCATCAACACAAGCACCCAGTGTTAATGGGGTCcTGCACAGACACTGACTCCTCACAGgtgacctcatcttgacagacatccctttcaactcagccagcatctggatc Alignment from Spaln_nt2Genome GACTCAGTCAAAATTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTC-TGCACGGACACCGACTCCTCACAG cccaagccagccaccggttaatgatcctctagtgtctgattcctccatagGACTCAGTCAAAATTGCCACCATCAACACAAGCACCCAGTGTTAATGGGGTCCTGCACAGACACTGACTCCTCACAGgtgacctcatcttgacagacatccctttcaactcagccagcatctggatc Alignment from Pairagon GACTCAGTCAAAATTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGT-CTGCACGGACACCGACTCCTCACAG cccaagccagccaccggttaatgatcctctagtgtctgattcctccatagGACTCAGTCAAAATTGCCACCATCAACACAAGCACCCAGTGTTAATGGGGTCCTGCACAGACACTGACTCCTCACAGgtgacctcatcttgacagacatccctttcaactcagccagcatctggatc Alignment from Exonerate_protein2genome GACTCAGTCAAAATTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTC-TGCACGGACACCGACTCCTCACAG cccaagccagccaccggttaatgatcctctagtgtctgattcctccatagGACTCAGTCAAAATTGCCACCATCAACACAAGCACCCAGTGTTAATGGGGTCCTGCACAGACACTGACTCCTCACAGgtgacctcatcttgacagacatccctttcaactcagccagcatctggatc Alignment from Exonerate_coding2genome GACTCAGTCAAAATTGCCACCATCCACACAAGCACCCAGTGTTAATGGGGTC-TGCACGGACACCGACTCCTCACAG cccaagccagccaccggttaatgatcctctagtgtctgattcctccatagGACTCAGTCAAAATTGCCACCATCAACACAAGCACCCAGTGTTAATGGGGTCCTGCACAGACACTGACTCCTCACAGgtgacctcatcttgacagacatccctttcaactcagccagcatctggatc Alignment from GeneWise GACTCAGTCAAAATTGCCACCATCCACACAAGCACCCAGTGTTAATGGG-GTCTGCACGGACACCGACTCCTCACAG cccaagccagccaccggttaatgatcctctagtgtctgattcctccatagGACTCAGTCAAAATTGCCACCATCAACACAAGCACCCAGTGTTAATGGGGTCCTGCACAGACACTGACTCCTCACAGgtgacctcatcttgacagacatccctttcaactcagccagcatctggatc #### Sptbn2_ID638_33 --> 0 - 2 Original Alignment GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGCCCCGGGGCCCT-GCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACag gggaaggatacaattgatgtcatcctttgagattgttctatttgaaatagGGATCTGGTACAGGAGATGAGTCCCGTGGGCCCCAGGGAGAGAGGCAGACCTTGCCACGTGGCCCTCGCTCCTTCTCCCATGCCCCAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCCTACCCACGCGAGGACCAGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAAATGGAAGCCTTCAACAAGAAAGCTGCCAACaggtatggatcatgccttggctgtactgaggcctgtggcctctcaggttctg Alignment from CESAR GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGCCCCGGGGCCCT-GCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACag gggaaggatacaattgatgtcatcctttgagattgttctatttgaaatagGGATCTGGTACAGGAGATGAGTCCCGTGGGCCCCAGGGAGAGAGGCAGACCTTGCCACGTGGCCCTCGCTCCTTCTCCCATGCCCCAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCCTACCCACGCGAGGACCAGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAAATGGAAGCCTTCAACAAGAAAGCTGCCAACaggtatggatcatgccttggctgtactgaggcctgtggcctctcaggttctg Alignment from Spaln_aa2Genome GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGCCCCGGGGCCCT-GCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG gggaaggatacaattgatgtcatcctttgagattgttctatttgaaatagGGATCTGGTACAGGAGATGAGTCCCGTGGGCCCCAGGGAGAGAGGCAGACCTTGCCACGTGGCCCTcGCTCCTTCTCCCATGCCCCAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCCTACCCACGCGAGGACCAGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAAATGGAAGCCTTCAACAAGAAAGCTGCCAACAGgtatggatcatgccttggctgtactgaggcctgtggcctctcaggttctg Alignment from Spaln_nt2Genome GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGCCCCGGGG-CCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG gggaaggatacaattgatgtcatcctttgagattgttctatttgaaatagGGATCTGGTACAGGAGATGAGTCCCGTGGGCCCCAGGGAGAGAGGCAGACCTTGCCACGTGGCCCTCGCTCCTTCTCCCATGCCCCAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCCTACCCACGCGAGGACCAGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAAATGGAAGCCTTCAACAAGAAAGCTGCCAACAGgtatggatcatgccttggctgtactgaggcctgtggcctctcaggttctg Alignment from Pairagon GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGCCCCGGGGCCCT-GCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG gggaaggatacaattgatgtcatcctttgagattgttctatttgaaatagGGATCTGGTACAGGAGATGAGTCCCGTGGGCCCCAGGGAGAGAGGCAGACCTTGCCACGTGGCCCTCGCTCCTTCTCCCATGCCCCAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCCTACCCACGCGAGGACCAGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAAATGGAAGCCTTCAACAAGAAAGCTGCCAACAGgtatggatcatgccttggctgtactgaggcctgtggcctctcaggttctg Alignment from Exonerate_protein2genome GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGCCCCGGGGCCCT-GCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG gggaaggatacaattgatgtcatcctttgagattgttctatttgaaatagGGATCTGGTACAGGAGATGAGTCCCGTGGGCCCCAGGGAGAGAGGCAGACCTTGCCACGTGGCCCTCGCTCCTTCTCCCATGCCCCAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCCTACCCACGCGAGGACCAGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAAATGGAAGCCTTCAACAAGAAAGCTGCCAACAGgtatggatcatgccttggctgtactgaggcctgtggcctctcaggttctg Alignment from Exonerate_coding2genome GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGCCCCGGGGCCCT-GCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG gggaaggatacaattgatgtcatcctttgagattgttctatttgaaatagGGATCTGGTACAGGAGATGAGTCCCGTGGGCCCCAGGGAGAGAGGCAGACCTTGCCACGTGGCCCTCGCTCCTTCTCCCATGCCCCAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCCTACCCACGCGAGGACCAGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAAATGGAAGCCTTCAACAAGAAAGCTGCCAACAGgtatggatcatgccttggctgtactgaggcctgtggcctctcaggttctg Alignment from GeneWise GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGCCCCGGGGCCCT-GCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG gggaaggatacaattgatgtcatcctttgagattgttctatttgaaatagGGATCTGGTACAGGAGATGAGTCCCGTGGGCCCCAGGGAGAGAGGCAGACCTTGCCACGTGGCCCTCGCTCCTTCTCCCATGCCCCAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCCTACCCACGCGAGGACCAGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAAATGGAAGCCTTCAACAAGAAAGCTGCCAACAGgtatggatcatgccttggctgtactgaggcctgtggcctctcaggttctg #### Ssh3_ID445_11 --> 1 - 2 Original Alignment aGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAG-ACACATCGATTCATTGAGGATGCCag gccctagttcctctgccacatcaggtctttcattggtttgtatttttcagaGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCAGCACAGCTTCTGCCCCACTGGAAGGAGCACACATCGATTTATTGAGGATGCCaggtagggctgctcccagttttgatgctccaacttctagtgcagactgggac Alignment from CESAR aGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAG-ACACATCGATTCATTGAGGATGCCag gccctagttcctctgccacatcaggtctttcattggtttgtatttttcagaGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCAGCACAGCTTCTGCCCCACTGGAAGGAGCACACATCGATTTATTGAGGATGCCaggtagggctgctcccagttttgatgctccaacttctagtgcagactgggac Alignment from Spaln_aa2Genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAG-ACACATCGATTCATTGAGGATGCCAG gccctagttcctctgccacatcaggtctttcattggtttgtatttttcagAGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCAGCACAGCTTCTGCCCCACTGGAAGGAGcACACATCGATTTATTGAGGATGCCAGgtagggctgctcccagttttgatgctccaacttctagtgcagactgggac Alignment from Spaln_nt2Genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAG-ACACATCGATTCATTGAGGATGCCAG gccctagttcctctgccacatcaggtctttcattggtttgtatttttcagAGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCAGCACAGCTTCTGCCCCACTGGAAGGAGCACACATCGATTTATTGAGGATGCCAGgtagggctgctcccagttttgatgctccaacttctagtgcagactgggac Alignment from Pairagon AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAG-ACACATCGATTCATTGAGGATGCCAG gccctagttcctctgccacatcaggtctttcattggtttgtatttttcagAGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCAGCACAGCTTCTGCCCCACTGGAAGGAGCACACATCGATTTATTGAGGATGCCAGgtagggctgctcccagttttgatgctccaacttctagtgcagactgggac Alignment from Exonerate_protein2genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAG-ACACATCGATTCATTGAGGATGCCAG gccctagttcctctgccacatcaggtctttcattggtttgtatttttcagAGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCAGCACAGCTTCTGCCCCACTGGAAGGAGCACACATCGATTTATTGAGGATGCCAGgtagggctgctcccagttttgatgctccaacttctagtgcagactgggac Alignment from Exonerate_coding2genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAG-ACACATCGATTCATTGAGGATGCCAG gccctagttcctctgccacatcaggtctttcattggtttgtatttttcagAGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCAGCACAGCTTCTGCCCCACTGGAAGGAGCACACATCGATTTATTGAGGATGCCAGgtagggctgctcccagttttgatgctccaacttctagtgcagactgggac Alignment from GeneWise AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAG-ACACATCGATTCATTGAGGATGCCAG gccctagttcctctgccacatcaggtctttcattggtttgtatttttcagAGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCAGCACAGCTTCTGCCCCACTGGAAGGAGCACACATCGATTTATTGAGGATGCCAGgtagggctgctcccagttttgatgctccaacttctagtgcagactgggac #### Ssh3_ID446_10 --> 0 - 2 Original Alignment CCCACCTCTACTTG GGCTCTGAGTGGAAT-GCTGCCAACCTGGAGGAACTTCAGAAAAACag CGCACCTCTACTTGgtaagcgtcctttatgcagtcctatttcatcaccagGGCTCTGAGTGGAATCGCTGCCAACCTGGAGGAACTTCAAAAGAACaggtaaaatttccggctgtgggtgcccctttttctcccagcctctctgtggc Alignment from CESAR CCCACCTCTACTTG GGCTCTGAGTGGAAT-GCTGCCAACCTGGAGGAACTTCAGAAAAACag CGCACCTCTACTTGgtaccggtcctttatgcagtcctatttcatcaccagGGCTCTGAGTGGAATCGCTGCCAACCTGGAGGAACTTCAAAAGAACaggtaaaatttccggctgtgggtgcccctttttctcccagcctctctgtggc Alignment from Spaln_aa2Genome CCCACCTCTACTTG GGCTCTGAGTGGAAT-GCTGCCAACCTGGAGGAACTTCAGAAAAACAG CGCACCTCTACTTGgtaagcgtcctttatgcagtcctatttcatcaccagGGCTCTGAGTGGAATcGCTGCCAACCTGGAGGAACTTCAAAAGAACAGgtaaaatttccggctgtgggtgcccctttttctcccagcctctctgtggc Alignment from Spaln_nt2Genome CCCACCTCTACTTG GGCTCTGAGTGGAAT-GCTGCCAACCTGGAGGAACTTCAGAAAAACAG CGCACCTCTACTTGgtaagcgtcctttatgcagtcctatttcatcaccagGGCTCTGAGTGGAATCGCTGCCAACCTGGAGGAACTTCAAAAGAACAGgtaaaatttccggctgtgggtgcccctttttctcccagcctctctgtggc Alignment from Pairagon CCCACCTCTACTTG GGCTCTGAGTGGAAT-GCTGCCAACCTGGAGGAACTTCAGAAAAACAG CGCACCTCTACTTGgtaagcgtcctttatgcagtcctatttcatcaccagGGCTCTGAGTGGAATCGCTGCCAACCTGGAGGAACTTCAAAAGAACAGgtaaaatttccggctgtgggtgcccctttttctcccagcctctctgtggc Alignment from Exonerate_protein2genome CCCACCTCTACTTG GGCTCTGAGTGGAAT-GCTGCCAACCTGGAGGAACTTCAGAAAAACAG CGCACCTCTACTTGgtaagcgtcctttatgcagtcctatttcatcaccagGGCTCTGAGTGGAATCGCTGCCAACCTGGAGGAACTTCAAAAGAACAGgtaaaatttccggctgtgggtgcccctttttctcccagcctctctgtggc Alignment from Exonerate_coding2genome CCCACCTCTACTTG GGCTCTGAGTGGAAT-GCTGCCAACCTGGAGGAACTTCAGAAAAACAG CGCACCTCTACTTGgtaagcgtcctttatgcagtcctatttcatcaccagGGCTCTGAGTGGAATCGCTGCCAACCTGGAGGAACTTCAAAAGAACAGgtaaaatttccggctgtgggtgcccctttttctcccagcctctctgtggc Alignment from GeneWise CCCACCTCTACTTG------------------------------------GGCTCTGAGTGGAAT-GCTGCCAACCTGGAGGAACTTCAGAAAAACAG CGCACCTCTACTTGGTAAGCGTCCTTTATGCAGTCCTATTTCATCACCAGGGCTCTGAGTGGAATCGCTGCCAACCTGGAGGAACTTCAAAAGAACAGgtaaaatttccggctgtgggtgcccctttttctcccagcctctctgtggc #### Ssh3_ID447_9 --> 0 - 0 Original Alignment ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATT-GACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA ttcataatggggggcccattcttttgcctcctgatgctctcgctctgcagATCCATCAGGCCCTGGAACTACGTCTTGGATGTCCTCTCCAGCAATACCGTGACTTTATTCGACAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCGGACATCTCGCATCTTCCCGCACCTCTACTTGgtaccggtcctttagactctcccatctactaaacagGGCTCTGAGTGGAA Alignment from CESAR ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATT-GACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA ttcataatggggggcccattcttttgcctcctgatgctctcgctctgcagATCCATCAGGCCCTGGAACTACGTCTTGGATGTCCTCTCCAGCAATACCGTGACTTTATTCGACAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCGGACATCTCGCATCTTCCCGCACCTCTACTTGgtaccggtcctttatgcagtcctatttcatcaccagGGCTCTGAGTGGAA Alignment from Spaln_aa2Genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATT-GACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA ttcataatggggggcccattcttttgcctcctgatgctctcgctctgcagATCCATCAGGCCCTGGAACTACGTCTTGGATGTCCTCTCCAGCAATACCGTGACTTTATTcGACAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCGGACATCTCGCATCTTCCCGCACCTCTACTTGgtaccggtcctttagactctcccatctactaaacagGGCTCTGAGTGGAA Alignment from Spaln_nt2Genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGAC-TTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA ttcataatggggggcccattcttttgcctcctgatgctctcgctctgcagATCCATCAGGCCCTGGAACTACGTCTTGGATGTCCTCTCCAGCAATACCGTGACTTTATTCGACAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCGGACATCTCGCATCTTCCCGCACCTCTACTTGgtaccggtcctttagactctcccatctactaaacagGGCTCTGAGTGGAA Alignment from Pairagon ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATT-GACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTT------------------------------------GGGCTCTGAGTGGAA ttcataatggggggcccattcttttgcctcctgatgctctcgctctgcagATCCATCAGGCCCTGGAACTACGTCTTGGATGTCCTCTCCAGCAATACCGTGACTTTATTCGACAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCGGACATCTCGCATCTTCCCGCACCTCTACTTGGTACCGGTCCTTTAGACTCTCCCATCTACTAAACAGGGCTCTGAGTGGAA Alignment from Exonerate_protein2genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATT-GACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA ttcataatggggggcccattcttttgcctcctgatgctctcgctctgcagATCCATCAGGCCCTGGAACTACGTCTTGGATGTCCTCTCCAGCAATACCGTGACTTTATTCGACAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCGGACATCTCGCATCTTCCCGCACCTCTACTTGgtaccggtcctttagactctcccatctactaaacagGGCTCTGAGTGGAA Alignment from Exonerate_coding2genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATT-GACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA ttcataatggggggcccattcttttgcctcctgatgctctcgctctgcagATCCATCAGGCCCTGGAACTACGTCTTGGATGTCCTCTCCAGCAATACCGTGACTTTATTCGACAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCGGACATCTCGCATCTTCCCGCACCTCTACTTGgtaccggtcctttagactctcccatctactaaacagGGCTCTGAGTGGAA Alignment from GeneWise ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTT-ATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA ttcataatggggggcccattcttttgcctcctgatgctctcgctctgcagATCCATCAGGCCCTGGAACTACGTCTTGGATGTCCTCTCCAGCAATACCGTGACTTTATTCGACAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCGGACATCTCGCATCTTCCCGCACCTCTACTTGgtaccggtcctttagactctcccatctactaaacagGGCTCTGAGTGGAA #### Ssh3_ID448_8 --> 1 - 0 Original Alignment gGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTG-GACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG gtgctggtggtaactaagtgaaatggaccccttcttccttgacctttcaggGCCTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGTTGAATTGTGGCAGGTGTTGCGATACCAGTGACCTTGAGAGTGTCACTTCTAAAGAGgtgagcatgatggctaggccagcctgagacttgccttcccttgtgactct Alignment from CESAR gGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTG-GACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG gtgctggtggtaactaagtgaaatggaccccttcttccttgacctttcaggGCCTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGTTGAATTGTGGCAGGTGTTGCGATACCAGTGACCTTGAGAGTGTCACTTCTAAAGAGgtgagcatgatggctaggccagcctgagacttgccttcccttgtgactct Alignment from Spaln_aa2Genome GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTG-GACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG gtgctggtggtaactaagtgaaatggaccccttcttccttgacctttcagGGCCTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGTTGAATTGTGGCAGGTGTTGcGATACCAGTGACCTTGAGAGTGTCACTTCTAAAGAGgtgagcatgatggctaggccagcctgagacttgccttcccttgtgactct Alignment from Spaln_nt2Genome GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTG-GACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG gtgctggtggtaactaagtgaaatggaccccttcttccttgacctttcagGGCCTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGTTGAATTGTGGCAGGTGTTGCGATACCAGTGACCTTGAGAGTGTCACTTCTAAAGAGgtgagcatgatggctaggccagcctgagacttgccttcccttgtgactct Alignment from Pairagon GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTG-GACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG gtgctggtggtaactaagtgaaatggaccccttcttccttgacctttcagGGCCTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGTTGAATTGTGGCAGGTGTTGCGATACCAGTGACCTTGAGAGTGTCACTTCTAAAGAGgtgagcatgatggctaggccagcctgagacttgccttcccttgtgactct Alignment from Exonerate_protein2genome GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTG-GACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG gtgctggtggtaactaagtgaaatggaccccttcttccttgacctttcagGGCCTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGTTGAATTGTGGCAGGTGTTGCGATACCAGTGACCTTGAGAGTGTCACTTCTAAAGAGgtgagcatgatggctaggccagcctgagacttgccttcccttgtgactct Alignment from Exonerate_coding2genome GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTGTTG-GACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG gtgctggtggtaactaagtgaaatggaccccttcttccttgacctttcagGGCCTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGTTGAATTGTGGCAGGTGTTGCGATACCAGTGACCTTGAGAGTGTCACTTCTAAAGAGgtgagcatgatggctaggccagcctgagacttgccttcccttgtgactct Alignment from GeneWise GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCTGAATTGTGGCAGGTG-TTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG gtgctggtggtaactaagtgaaatggaccccttcttccttgacctttcagGGCCTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGTTGAATTGTGGCAGGTGTTGCGATACCAGTGACCTTGAGAGTGTCACTTCTAAAGAGgtgagcatgatggctaggccagcctgagacttgccttcccttgtgactct #### Stambpl1_ID6902_9 --> 1 - 0 Original Alignment cACCGGCATTTTCAGGCTC-ACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctggatggtccttaactttgtgttaattttttcctttctgcacagcACTGGCATCTTCAGGCTCCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtaaacagacaacatgggattgttattgtattttatcatcatcatcaatg Alignment from CESAR cACCGGCATTTTCAGGCTC-ACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctggatggtccttaactttgtgttaattttttcctttctgcacagcACTGGCATCTTCAGGCTCCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtaaacagacaacatgggattgttattgtattttatcatcatcatcaatg Alignment from Spaln_aa2Genome CACCGGCATTTTCAGGCTC-ACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctggatggtccttaactttgtgttaattttttcctttctgcacagCACTGGCATCTTCAGGCTCcACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtaaacagacaacatgggattgttattgtattttatcatcatcatcaatg Alignment from Spaln_nt2Genome CACCGGCATTTTCAGGCTC-ACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctggatggtccttaactttgtgttaattttttcctttctgcacagCACTGGCATCTTCAGGCTCCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtaaacagacaacatgggattgttattgtattttatcatcatcatcaatg Alignment from Pairagon CACCGGCATTTTCAGGCT-CACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctggatggtccttaactttgtgttaattttttcctttctgcacagCACTGGCATCTTCAGGCTCCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtaaacagacaacatgggattgttattgtattttatcatcatcatcaatg Alignment from Exonerate_protein2genome CACCGGCATTTTCAGGCTC-ACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctggatggtccttaactttgtgttaattttttcctttctgcacagCACTGGCATCTTCAGGCTCCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtaaacagacaacatgggattgttattgtattttatcatcatcatcaatg Alignment from Exonerate_coding2genome CACCGGCATTTTCAGGCTC-ACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctggatggtccttaactttgtgttaattttttcctttctgcacagCACTGGCATCTTCAGGCTCCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtaaacagacaacatgggattgttattgtattttatcatcatcatcaatg Alignment from GeneWise CACCGGCATTTTCAGG-CTCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctggatggtccttaactttgtgttaattttttcctttctgcacagCACTGGCATCTTCAGGCTCCACCAACGCTGGCATGCTTGAGGTTTCTACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtaaacagacaacatgggattgttattgtattttatcatcatcatcaatg #### Stip1_ID1988_13 --> 0 - 2 Original Alignment GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATG-AGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCga gtgacccatatagtgttgatatgccccctctctaatctgttgtattacagGAAGCAGCAGATGGTTACCAACGTTGCATGATGGCACAGTACAACAGACATGACAGCCCTGAGGATGTGAAGCGGCAGGCCATGGCCGACCCTGAGGTTCAGCAGATAATGAGTGACCCAGCCATGCAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCgagtatcatgagtggggaagtgagagagaattttatgtttctttcagtgaac Alignment from CESAR GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATG-AGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCga gtgacccatatagtgttgatatgccccctctctaatctgttgtattacagGAAGCAGCAGATGGTTACCAACGTTGCATGATGGCACAGTACAACAGACATGACAGCCCTGAGGATGTGAAGCGGCAGGCCATGGCCGACCCTGAGGTTCAGCAGATAATGAGTGACCCAGCCATGCAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCgagtatcatgagtggggaagtgagagagaattttatgtttctttcagtgaac Alignment from Spaln_aa2Genome GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATG-AGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA gtgacccatatagtgttgatatgccccctctctaatctgttgtattacagGAAGCAGCAGATGGTTACCAACGTTGCATGATGGCACAGTACAACAGACATGACAGCCCTGAGGATGTGAAGCGGCAGGCCATGGCCGACCCTGAGGTTCAGCAGATAATGAGTGACCCAGCCATGcAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGAgtatcatgagtggggaagtgagagagaattttatgtttctttcagtgaac Alignment from Spaln_nt2Genome GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATG-AGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA gtgacccatatagtgttgatatgccccctctctaatctgttgtattacagGAAGCAGCAGATGGTTACCAACGTTGCATGATGGCACAGTACAACAGACATGACAGCCCTGAGGATGTGAAGCGGCAGGCCATGGCCGACCCTGAGGTTCAGCAGATAATGAGTGACCCAGCCATGCAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGAgtatcatgagtggggaagtgagagagaattttatgtttctttcagtgaac Alignment from Pairagon GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATG-AGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA gtgacccatatagtgttgatatgccccctctctaatctgttgtattacagGAAGCAGCAGATGGTTACCAACGTTGCATGATGGCACAGTACAACAGACATGACAGCCCTGAGGATGTGAAGCGGCAGGCCATGGCCGACCCTGAGGTTCAGCAGATAATGAGTGACCCAGCCATGCAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGAgtatcatgagtggggaagtgagagagaattttatgtttctttcagtgaac Alignment from Exonerate_protein2genome GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATG-AGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA gtgacccatatagtgttgatatgccccctctctaatctgttgtattacagGAAGCAGCAGATGGTTACCAACGTTGCATGATGGCACAGTACAACAGACATGACAGCCCTGAGGATGTGAAGCGGCAGGCCATGGCCGACCCTGAGGTTCAGCAGATAATGAGTGACCCAGCCATGCAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGAgtatcatgagtggggaagtgagagagaattttatgtttctttcagtgaac Alignment from Exonerate_coding2genome GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATG-AGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA gtgacccatatagtgttgatatgccccctctctaatctgttgtattacagGAAGCAGCAGATGGTTACCAACGTTGCATGATGGCACAGTACAACAGACATGACAGCCCTGAGGATGTGAAGCGGCAGGCCATGGCCGACCCTGAGGTTCAGCAGATAATGAGTGACCCAGCCATGCAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGAgtatcatgagtggggaagtgagagagaattttatgtttctttcagtgaac Alignment from GeneWise GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATG-AGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA gtgacccatatagtgttgatatgccccctctctaatctgttgtattacagGAAGCAGCAGATGGTTACCAACGTTGCATGATGGCACAGTACAACAGACATGACAGCCCTGAGGATGTGAAGCGGCAGGCCATGGCCGACCCTGAGGTTCAGCAGATAATGAGTGACCCAGCCATGCAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGAgtatcatgagtggggaagtgagagagaattttatgtttctttcagtgaac #### Stx5a_ID2331_3 --> 1 - 1 Original Alignment gCGCATTGGGAAA-GATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCt ttgtgttggaggtcatggtaactgcttcttatttttctcttaaatattaggCGCATTGGGAAACGATCTGAGTAATACGTTTGCCAAACTGGAGAAGTTAACAATCtgtaaggatttgagaggcctttccaggtgagccttaaaaccccgcaccata Alignment from CESAR gCGCATTGGGAAA-GATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCt ttgtgttggaggtcatggtaactgcttcttatttttctcttaaatattaggCGCATTGGGAAACGATCTGAGTAATACGTTTGCCAAACTGGAGAAGTTAACAATCtgtaaggatttgagaggcctttccaggtgagccttaaaaccccgcaccata Alignment from Spaln_aa2Genome GCGCATTGGGAAA-GATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCT ttgtgttggaggtcatggtaactgcttcttatttttctcttaaatattagGCGCATTGGGAAAcGATCTGAGTAATACGTTTGCCAAACTGGAGAAGTTAACAATCTgtaaggatttgagaggcctttccaggtgagccttaaaaccccgcaccata Alignment from Spaln_nt2Genome GCGCATTGGGAAA-GATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCT ttgtgttggaggtcatggtaactgcttcttatttttctcttaaatattagGCGCATTGGGAAACGATCTGAGTAATACGTTTGCCAAACTGGAGAAGTTAACAATCTgtaaggatttgagaggcctttccaggtgagccttaaaaccccgcaccata Alignment from Pairagon GCGCATTGGGAAA-GATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCT ttgtgttggaggtcatggtaactgcttcttatttttctcttaaatattagGCGCATTGGGAAACGATCTGAGTAATACGTTTGCCAAACTGGAGAAGTTAACAATCTgtaaggatttgagaggcctttccaggtgagccttaaaaccccgcaccata Alignment from Exonerate_protein2genome GCGCATTGGGAAA-GATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCT ttgtgttggaggtcatggtaactgcttcttatttttctcttaaatattagGCGCATTGGGAAACGATCTGAGTAATACGTTTGCCAAACTGGAGAAGTTAACAATCTgtaaggatttgagaggcctttccaggtgagccttaaaaccccgcaccata Alignment from Exonerate_coding2genome GCGCATTGGGAAA-GATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCT ttgtgttggaggtcatggtaactgcttcttatttttctcttaaatattagGCGCATTGGGAAACGATCTGAGTAATACGTTTGCCAAACTGGAGAAGTTAACAATCTgtaaggatttgagaggcctttccaggtgagccttaaaaccccgcaccata Alignment from GeneWise ttgtgttggaggtcatggtaactgcttcttatttttctcttaaatattaggcgcattgggaaacgatctgagtaatacgtttgccaaactggagaagttaacaatctgtaaggatttgagaggcctttccaggtgagccttaaaaccccgcaccata #### Stx5a_ID2334_6 --> 0 - 0 Original Alignment TCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTT-CTAGAAGTGAGGACTGAG ggggggaataacaaaatacattctctgttcccttgcccctcccccaacagTCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTTCCTAGAAGTGAGGACTGAGgtgagcgggataagtagctgggtaaggaccttttgtagggtacacacacc Alignment from CESAR TCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTT-CTAGAAGTGAGGACTGAG ggggggaataacaaaatacattctctgttcccttgcccctcccccaacagTCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTTCCTAGAAGTGAGGACTGAGgtgagcgggataagtagctgggtaaggaccttttgtagggtacacacacc Alignment from Spaln_aa2Genome TCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTT-CTAGAAGTGAGGACTGAG ggggggaataacaaaatacattctctgttcccttgcccctcccccaacagTCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTTcCTAGAAGTGAGGACTGAGgtgagcgggataagtagctgggtaaggaccttttgtagggtacacacacc Alignment from Spaln_nt2Genome TCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTT-CTAGAAGTGAGGACTGAG ggggggaataacaaaatacattctctgttcccttgcccctcccccaacagTCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTTCCTAGAAGTGAGGACTGAGgtgagcgggataagtagctgggtaaggaccttttgtagggtacacacacc Alignment from Pairagon TCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTT-CTAGAAGTGAGGACTGAG ggggggaataacaaaatacattctctgttcccttgcccctcccccaacagTCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTTCCTAGAAGTGAGGACTGAGgtgagcgggataagtagctgggtaaggaccttttgtagggtacacacacc Alignment from Exonerate_protein2genome TCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTT-CTAGAAGTGAGGACTGAG ggggggaataacaaaatacattctctgttcccttgcccctcccccaacagTCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTTCCTAGAAGTGAGGACTGAGgtgagcgggataagtagctgggtaaggaccttttgtagggtacacacacc Alignment from Exonerate_coding2genome TCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTT-CTAGAAGTGAGGACTGAG ggggggaataacaaaatacattctctgttcccttgcccctcccccaacagTCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTTCCTAGAAGTGAGGACTGAGgtgagcgggataagtagctgggtaaggaccttttgtagggtacacacacc Alignment from GeneWise TCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCA-GTTCTAGAAGTGAGGACTGAG ggggggaataacaaaatacattctctgttcccttgcccctcccccaacagTCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTTCCTAGAAGTGAGGACTGAGgtgagcgggataagtagctgggtaaggaccttttgtagggtacacacacc #### Syvn1_ID1384_3 --> 0 - 0 Original Alignment CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTT-GTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggagggtgcccaaatgcatttttcatgactctctcccttatttccctagCACCTTCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTCACTGTTATTCGAGATGACTCGAGTCCTCGATTTCGTGGCACTCTTTATGCTGCTTCTCTTCCTCAAATGTTTCCAGTGGTTAGCTGAAGACCATGTGGACTTTgtgagttgggagtggctgatgggcatgccagtggattggggtgtggggca Alignment from CESAR CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTT-GTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggagggtgcccaaatgcatttttcatgactctctcccttatttccctagCACCTTCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTCACTGTTATTCGAGATGACTCGAGTCCTCGATTTCGTGGCACTCTTTATGCTGCTTCTCTTCCTCAAATGTTTCCAGTGGTTAGCTGAAGACCATGTGGACTTTgtgagttgggagtggctgatgggcatgccagtggattggggtgtggggca Alignment from Spaln_aa2Genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTT-GTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggagggtgcccaaatgcatttttcatgactctctcccttatttccctagCACCTTCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTCACTGTTATTCGAGATGACTCGAGTCCTCGATTTcGTGGCACTCTTTATGCTGCTTCTCTTCCTCAAATGTTTCCAGTGGTTAGCTGAAGACCATGTGGACTTTgtgagttgggagtggctgatgggcatgccagtggattggggtgtggggca Alignment from Spaln_nt2Genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGC-TTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggagggtgcccaaatgcatttttcatgactctctcccttatttccctagCACCTTCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTCACTGTTATTCGAGATGACTCGAGTCCTCGATTTCGTGGCACTCTTTATGCTGCTTCTCTTCCTCAAATGTTTCCAGTGGTTAGCTGAAGACCATGTGGACTTTgtgagttgggagtggctgatgggcatgccagtggattggggtgtggggca Alignment from Pairagon CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTT-GTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggagggtgcccaaatgcatttttcatgactctctcccttatttccctagCACCTTCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTCACTGTTATTCGAGATGACTCGAGTCCTCGATTTCGTGGCACTCTTTATGCTGCTTCTCTTCCTCAAATGTTTCCAGTGGTTAGCTGAAGACCATGTGGACTTTgtgagttgggagtggctgatgggcatgccagtggattggggtgtggggca Alignment from Exonerate_protein2genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGC-TTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggagggtgcccaaatgcatttttcatgactctctcccttatttccctagCACCTTCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTCACTGTTATTCGAGATGACTCGAGTCCTCGATTTCGTGGCACTCTTTATGCTGCTTCTCTTCCTCAAATGTTTCCAGTGGTTAGCTGAAGACCATGTGGACTTTgtgagttgggagtggctgatgggcatgccagtggattggggtgtggggca Alignment from Exonerate_coding2genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGC-TTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggagggtgcccaaatgcatttttcatgactctctcccttatttccctagCACCTTCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTCACTGTTATTCGAGATGACTCGAGTCCTCGATTTCGTGGCACTCTTTATGCTGCTTCTCTTCCTCAAATGTTTCCAGTGGTTAGCTGAAGACCATGTGGACTTTgtgagttgggagtggctgatgggcatgccagtggattggggtgtggggca Alignment from GeneWise CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTT-GTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggagggtgcccaaatgcatttttcatgactctctcccttatttccctagCACCTTCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTCACTGTTATTCGAGATGACTCGAGTCCTCGATTTCGTGGCACTCTTTATGCTGCTTCTCTTCCTCAAATGTTTCCAGTGGTTAGCTGAAGACCATGTGGACTTTgtgagttgggagtggctgatgggcatgccagtggattggggtgtggggca #### Syvn1_ID1387_6 --> 0 - 1 Original Alignment TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAG-TATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAg agagcaaggggaagctaggactcacatctgtgcgctcatgtctctcttagTACGCCATTCTGATGACCATGGCACTCACCATCTTCATCAAGCTATGTGCTGCACTCTGTGGACCTCCAGAGCGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAggtaagtaattcccattcagtccacagctgcatcacagcatccactggtgt Alignment from CESAR TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAG-TATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAg agagcaaggggaagctaggactcacatctgtgcgctcatgtctctcttagTACGCCATTCTGATGACCATGGCACTCACCATCTTCATCAAGCTATGTGCTGCACTCTGTGGACCTCCAGAGCGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAggtaagtaattcccattcagtccacagctgcatcacagcatccactggtgt Alignment from Spaln_aa2Genome TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAG-TATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcaaggggaagctaggactcacatctgtgcgctcatgtctctcttagTACGCCATTCTGATGACCATGGCACTCACCATCTTCATCAAGcTATGTGCTGCACTCTGTGGACCTCCAGAGCGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtaagtaattcccattcagtccacagctgcatcacagcatccactggtgt Alignment from Spaln_nt2Genome TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAG-TATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcaaggggaagctaggactcacatctgtgcgctcatgtctctcttagTACGCCATTCTGATGACCATGGCACTCACCATCTTCATCAAGCTATGTGCTGCACTCTGTGGACCTCCAGAGCGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtaagtaattcccattcagtccacagctgcatcacagcatccactggtgt Alignment from Pairagon TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAG-TATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcaaggggaagctaggactcacatctgtgcgctcatgtctctcttagTACGCCATTCTGATGACCATGGCACTCACCATCTTCATCAAGCTATGTGCTGCACTCTGTGGACCTCCAGAGCGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtaagtaattcccattcagtccacagctgcatcacagcatccactggtgt Alignment from Exonerate_protein2genome TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAG-TATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcaaggggaagctaggactcacatctgtgcgctcatgtctctcttagTACGCCATTCTGATGACCATGGCACTCACCATCTTCATCAAGCTATGTGCTGCACTCTGTGGACCTCCAGAGCGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtaagtaattcccattcagtccacagctgcatcacagcatccactggtgt Alignment from Exonerate_coding2genome TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAG-TATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcaaggggaagctaggactcacatctgtgcgctcatgtctctcttagTACGCCATTCTGATGACCATGGCACTCACCATCTTCATCAAGCTATGTGCTGCACTCTGTGGACCTCCAGAGCGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtaagtaattcccattcagtccacagctgcatcacagcatccactggtgt Alignment from GeneWise TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATC-AAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcaaggggaagctaggactcacatctgtgcgctcatgtctctcttagTACGCCATTCTGATGACCATGGCACTCACCATCTTCATCAAGCTATGTGCTGCACTCTGTGGACCTCCAGAGCGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtaagtaattcccattcagtccacagctgcatcacagcatccactggtgt #### Syvn1_ID1388_7 --> 2 - 2 Original Alignment gcTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACC-ATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGag ggtgtgtctgccagccctgcagttggctcattcccttccctctattataggcTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAAGCCCATGTACCTGGCCATGaggtgagtctggccttgtcttagtcactcccatgttccccttcctctcctct Alignment from CESAR gcTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACC-ATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGag ggtgtgtctgccagccctgcagttggctcattcccttccctctattataggcTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAAGCCCATGTACCTGGCCATGaggtgagtctggccttgtcttagtcactcccatgttccccttccctatcctc Alignment from Spaln_aa2Genome GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACC-ATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtgtctgccagccctgcagttggctcattcccttccctctattatagGCTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCcATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtgagtctggccttgtcttagtcactcccatgttccccttcctctcctct Alignment from Spaln_nt2Genome GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGA-CCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtgtctgccagccctgcagttggctcattcccttccctctattatagGCTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtgagtctggccttgtcttagtcactcccatgttccccttcctctcctct Alignment from Pairagon GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGA-CCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtgtctgccagccctgcagttggctcattcccttccctctattatagGCTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtgagtctggccttgtcttagtcactcccatgttccccttcctctcctct Alignment from Exonerate_protein2genome GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACC-ATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtgtctgccagccctgcagttggctcattcccttccctctattatagGCTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtgagtctggccttgtcttagtcactcccatgttccccttcctctcctct Alignment from Exonerate_coding2genome GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACC-ATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtgtctgccagccctgcagttggctcattcccttccctctattatagGCTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtgagtctggccttgtcttagtcactcccatgttccccttcctctcctct Alignment from GeneWise GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACC-ATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtgtctgccagccctgcagttggctcattcccttccctctattatagGCTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtgagtctggccttgtcttagtcactcccatgttccccttcctctcctct #### Syvn1_ID1393_12 --> 2 - 1 Original Alignment ccGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATG-GGTATGCCTCTGCCTCCACCTTTTg aggagattgatccattctcaatttgcattttctaatctgttgtgttccagctGTTTCTCGGCCTAGTGGAGCAGCAACCACCACAGCTGCTGGCACCAGTCCTTCTGCCCCAGCATCTGGGTCTGTGCCTGGCCCAGAGGCTGGTCCTGCCCCTGGCTTCCCTTTCCCCCCTCCTTGGATGCGGTATGCCTCTGCCTCCACCTTTTggtaaggtggccattcacttggatctggggtggaaagctgaggcccaggta Alignment from CESAR ccGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATG-GGTATGCCTCTGCCTCCACCTTTTg aggagattgatccattctcaatttgcattttctaatctgttgtgttccagctGTTTCTCGGCCTAGTGGAGCAGCAACCACCACAGCTGCTGGCACCAGTCCTTCTGCCCCAGCATCTGGGTCTGTGCCTGGCCCAGAGGCTGGTCCTGCCCCTGGCTTCCCTTTCCCCCCTCCTTGGATGCGGTATGCCTCTGCCTCCACCTTTTggtaaggtggccattcacttggatctggggtggaaagctgaggcccaggta Alignment from Spaln_aa2Genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATG-GGTATGCCTCTGCCTCCACCTTTTG aggagattgatccattctcaatttgcattttctaatctgttgtgttccagCTGTTTCTCGGCCTAGTGGAGCAGCAACCACCACAGCTGCTGGCACCAGTCCTTCTGCCCCAGCATCTGGGTCTGTGCCTGGCCCAGAGGCTGGTCCTGCCCCTGGCTTCCCTTTCCCCCCTCCTTGGATGcGGTATGCCTCTGCCTCCACCTTTTGgtaaggtggccattcacttggatctggggtggaaagctgaggcccaggta Alignment from Spaln_nt2Genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATG-GGTATGCCTCTGCCTCCACCTTTTG aggagattgatccattctcaatttgcattttctaatctgttgtgttccagCTGTTTCTCGGCCTAGTGGAGCAGCAACCACCACAGCTGCTGGCACCAGTCCTTCTGCCCCAGCATCTGGGTCTGTGCCTGGCCCAGAGGCTGGTCCTGCCCCTGGCTTCCCTTTCCCCCCTCCTTGGATGCGGTATGCCTCTGCCTCCACCTTTTGgtaaggtggccattcacttggatctggggtggaaagctgaggcccaggta Alignment from Pairagon CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATG-GGTATGCCTCTGCCTCCACCTTTTG aggagattgatccattctcaatttgcattttctaatctgttgtgttccagCTGTTTCTCGGCCTAGTGGAGCAGCAACCACCACAGCTGCTGGCACCAGTCCTTCTGCCCCAGCATCTGGGTCTGTGCCTGGCCCAGAGGCTGGTCCTGCCCCTGGCTTCCCTTTCCCCCCTCCTTGGATGCGGTATGCCTCTGCCTCCACCTTTTGgtaaggtggccattcacttggatctggggtggaaagctgaggcccaggta Alignment from Exonerate_protein2genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATG-GGTATGCCTCTGCCTCCACCTTTTG aggagattgatccattctcaatttgcattttctaatctgttgtgttccagCTGTTTCTCGGCCTAGTGGAGCAGCAACCACCACAGCTGCTGGCACCAGTCCTTCTGCCCCAGCATCTGGGTCTGTGCCTGGCCCAGAGGCTGGTCCTGCCCCTGGCTTCCCTTTCCCCCCTCCTTGGATGCGGTATGCCTCTGCCTCCACCTTTTGgtaaggtggccattcacttggatctggggtggaaagctgaggcccaggta Alignment from Exonerate_coding2genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATG-GGTATGCCTCTGCCTCCACCTTTTG aggagattgatccattctcaatttgcattttctaatctgttgtgttccagCTGTTTCTCGGCCTAGTGGAGCAGCAACCACCACAGCTGCTGGCACCAGTCCTTCTGCCCCAGCATCTGGGTCTGTGCCTGGCCCAGAGGCTGGTCCTGCCCCTGGCTTCCCTTTCCCCCCTCCTTGGATGCGGTATGCCTCTGCCTCCACCTTTTGgtaaggtggccattcacttggatctggggtggaaagctgaggcccaggta Alignment from GeneWise CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGG-ATGGGTATGCCTCTGCCTCCACCTTTTG aggagattgatccattctcaatttgcattttctaatctgttgtgttccagCTGTTTCTCGGCCTAGTGGAGCAGCAACCACCACAGCTGCTGGCACCAGTCCTTCTGCCCCAGCATCTGGGTCTGTGCCTGGCCCAGAGGCTGGTCCTGCCCCTGGCTTCCCTTTCCCCCCTCCTTGGATGCGGTATGCCTCTGCCTCCACCTTTTGgtaaggtggccattcacttggatctggggtggaaagctgaggcccaggta #### Taf5_ID10096_4 --> 0 - 2 Original Alignment GTATTTTTTGGTTTACTAAAAGAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAAGAA-GGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACag accaaatatgttgaacaaaagtttaggacttggctcactcttccttacagGTATTTTTTGGTCTACTAAAAGAACCAGACATTGAGGTGCCCTTGGATGACGAGGATGAGGAAGGAGAAAATGAAGAACGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACaggtaaaaagtacataaaggtgaaagctatggcgcagaggactggagtggat Alignment from CESAR GTATTTTTTGGTTTACTAAAAGAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAAGAA-GGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACag accaaatatgttgaacaaaagtttaggacttggctcactcttccttacagGTATTTTTTGGTCTACTAAAAGAACCAGACATTGAGGTGCCCTTGGATGACGAGGATGAGGAAGGAGAAAATGAAGAACGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACaggtaaaaagtacataaaggtgaaagctatggcgcagaggactggagtggat Alignment from Spaln_aa2Genome GTATTTTTTGGTTTACTAAAAGAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAAGAA-GGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACAG accaaatatgttgaacaaaagtttaggacttggctcactcttccttacagGTATTTTTTGGTCTACTAAAAGAACCAGACATTGAGGTGCCCTTGGATGACGAGGATGAGGAAGGAGAAAATGAAGAAcGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACAGgtaaaaagtacataaaggtgaaagctatggcgcagaggactggagtggat Alignment from Spaln_nt2Genome GTATTTTTTGGTTTACTAAAAGAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAAGAA-GGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACAG accaaatatgttgaacaaaagtttaggacttggctcactcttccttacagGTATTTTTTGGTCTACTAAAAGAACCAGACATTGAGGTGCCCTTGGATGACGAGGATGAGGAAGGAGAAAATGAAGAACGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACAGgtaaaaagtacataaaggtgaaagctatggcgcagaggactggagtggat Alignment from Pairagon GTATTTTTTGGTTTACTAAAAGAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAAGAA-GGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACAG accaaatatgttgaacaaaagtttaggacttggctcactcttccttacagGTATTTTTTGGTCTACTAAAAGAACCAGACATTGAGGTGCCCTTGGATGACGAGGATGAGGAAGGAGAAAATGAAGAACGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACAGgtaaaaagtacataaaggtgaaagctatggcgcagaggactggagtggat Alignment from Exonerate_protein2genome GTATTTTTTGGTTTACTAAAAGAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAAGAA-GGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACAG accaaatatgttgaacaaaagtttaggacttggctcactcttccttacagGTATTTTTTGGTCTACTAAAAGAACCAGACATTGAGGTGCCCTTGGATGACGAGGATGAGGAAGGAGAAAATGAAGAACGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACAGgtaaaaagtacataaaggtgaaagctatggcgcagaggactggagtggat Alignment from Exonerate_coding2genome GTATTTTTTGGTTTACTAAAAGAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAAGAA-GGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACAG accaaatatgttgaacaaaagtttaggacttggctcactcttccttacagGTATTTTTTGGTCTACTAAAAGAACCAGACATTGAGGTGCCCTTGGATGACGAGGATGAGGAAGGAGAAAATGAAGAACGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACAGgtaaaaagtacataaaggtgaaagctatggcgcagaggactggagtggat Alignment from GeneWise GTATTTTTTGGTTTACTAAAAGAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAA-GAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACAG accaaatatgttgaacaaaagtttaggacttggctcactcttccttacagGTATTTTTTGGTCTACTAAAAGAACCAGACATTGAGGTGCCCTTGGATGACGAGGATGAGGAAGGAGAAAATGAAGAACGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACAGgtaaaaagtacataaaggtgaaagctatggcgcagaggactggagtggat #### Taf5_ID10102_10 --> 0 - 1 Original Alignment GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATG-GTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAg tccactttagtctgatcagataaatttatactccttcttttcttaaatagGGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCCTGATGCGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAggtgaggcattgcaggtccatagggtagagaaaccacagcaaacacaaatt Alignment from CESAR GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATG-GTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAg tccactttagtctgatcagataaatttatactccttcttttcttaaatagGGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCCTGATGCGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAggtgaggcattgcaggtccatagggtagagaaaccacagcaaacacaaatt Alignment from Spaln_aa2Genome GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATG-GTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tccactttagtctgatcagataaatttatactccttcttttcttaaatagGGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCCTGATGcGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAGgtgaggcattgcaggtccatagggtagagaaaccacagcaaacacaaatt Alignment from Spaln_nt2Genome GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATG-GTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tccactttagtctgatcagataaatttatactccttcttttcttaaatagGGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCCTGATGCGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAGgtgaggcattgcaggtccatagggtagagaaaccacagcaaacacaaatt Alignment from Pairagon GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATG-GTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tccactttagtctgatcagataaatttatactccttcttttcttaaatagGGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCCTGATGCGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAGgtgaggcattgcaggtccatagggtagagaaaccacagcaaacacaaatt Alignment from Exonerate_protein2genome GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATG-GTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tccactttagtctgatcagataaatttatactccttcttttcttaaatagGGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCCTGATGCGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAGgtgaggcattgcaggtccatagggtagagaaaccacagcaaacacaaatt Alignment from Exonerate_coding2genome GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATG-GTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tccactttagtctgatcagataaatttatactccttcttttcttaaatagGGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCCTGATGCGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAGgtgaggcattgcaggtccatagggtagagaaaccacagcaaacacaaatt Alignment from GeneWise GGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCTTGATG-GTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAG tccactttagtctgatcagataaatttatactccttcttttcttaaatagGGACCAATTCATTCCTTGACATTTTCTCCCAATGGGAGATTCCTAGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGACACGGCCTGATGCGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATGGTGAAATTTTGGCATCAGgtgaggcattgcaggtccatagggtagagaaaccacagcaaacacaaatt #### Tbc1d10c_ID398_6 --> 0 - 0 Original Alignment GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGC-TACTATGGGCCCCACATG caattccttagtaagtactcataggcctaccgttcttttccattgtctagGAGGCCTTCTGGTGCTTGGTGCAGATCTGTGAGGTTTACCTCCCTGGCCTACTATGGGCCCCACATGgtgagtgattgggttgacaggtgaaaaaaggacactgagacatctgaagc Alignment from CESAR GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGC-TACTATGGGCCCCACATG caattccttagtaagtactcataggcctaccgttcttttccattgtctagGAGGCCTTCTGGTGCTTGGTGCAGATCTGTGAGGTTTACCTCCCTGGCCTACTATGGGCCCCACATGgtgagtgattgggttgacaggtgaaaaaaggacactgagacatctgaagc Alignment from Spaln_aa2Genome GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGC-TACTATGGGCCCCACATG caattccttagtaagtactcataggcctaccgttcttttccattgtctagGAGGCCTTCTGGTGCTTGGTGCAGATCTGTGAGGTTTACCTCCCTGGCcTACTATGGGCCCCACATGgtgagtgattgggttgacaggtgaaaaaaggacactgagacatctgaagc Alignment from Spaln_nt2Genome GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGG-CTACTATGGGCCCCACATG caattccttagtaagtactcataggcctaccgttcttttccattgtctagGAGGCCTTCTGGTGCTTGGTGCAGATCTGTGAGGTTTACCTCCCTGGCCTACTATGGGCCCCACATGgtgagtgattgggttgacaggtgaaaaaaggacactgagacatctgaagc Alignment from Pairagon GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGG-CTACTATGGGCCCCACATG caattccttagtaagtactcataggcctaccgttcttttccattgtctagGAGGCCTTCTGGTGCTTGGTGCAGATCTGTGAGGTTTACCTCCCTGGCCTACTATGGGCCCCACATGgtgagtgattgggttgacaggtgaaaaaaggacactgagacatctgaagc Alignment from Exonerate_protein2genome GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGC-TACTATGGGCCCCACATG caattccttagtaagtactcataggcctaccgttcttttccattgtctagGAGGCCTTCTGGTGCTTGGTGCAGATCTGTGAGGTTTACCTCCCTGGCCTACTATGGGCCCCACATGgtgagtgattgggttgacaggtgaaaaaaggacactgagacatctgaagc Alignment from Exonerate_coding2genome GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCTGGC-TACTATGGGCCCCACATG caattccttagtaagtactcataggcctaccgttcttttccattgtctagGAGGCCTTCTGGTGCTTGGTGCAGATCTGTGAGGTTTACCTCCCTGGCCTACTATGGGCCCCACATGgtgagtgattgggttgacaggtgaaaaaaggacactgagacatctgaagc Alignment from GeneWise GAGGCCTTCTGGTGCTTGGTGCAGATCTGCGAGGTCTACCTCCCT-GGCTACTATGGGCCCCACATG caattccttagtaagtactcataggcctaccgttcttttccattgtctagGAGGCCTTCTGGTGCTTGGTGCAGATCTGTGAGGTTTACCTCCCTGGCCTACTATGGGCCCCACATGgtgagtgattgggttgacaggtgaaaaaaggacactgagacatctgaagc #### Tbc1d10c_ID399_5 --> 1 - 0 Original Alignment gCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTAC-CGGCCAGAGCAGGGATAC------TGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacagggggatgcctgggtggctagcctcctgaattcatcttattctaggCAGCAGGGGCTACTGCAGGTTATGAAGGCTTACAACCTATACCCGGCCAGAGCAGGGATACTGTCACTGTCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCGCCAGAGgtccctgaccttgaacctgctatgagaccctcaacccctagtgatccgcg Alignment from CESAR gCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTAC-CGGCCAGAGCAGGGATACTGC------CAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacagggggatgcctgggtggctagcctcctgaattcatcttattctaggCAGCAGGGGCTACTGCAGGTTATGAAGGCTTACAACCTATACCCGGCCAGAGCAGGGATACTGTCACTGTCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCGCCAGAGgtccctgaccttgaacctgctatgagaccctcaacccctagtgatccgcg Alignment from Spaln_aa2Genome GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTAC-CGGCCAGAGCAGGGATAC------TGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacagggggatgcctgggtggctagcctcctgaattcatcttattctagGCAGCAGGGGCTACTGCAGGTTATGAAGGCTTACAACCTATACcCGGCCAGAGCAGGGATACTGTCACTGTCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCGCCAGAGgtccctgaccttgaacctgctatgagaccctcaacccctagtgatccgcg Alignment from Spaln_nt2Genome GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCG-GCCAGAGCAGGGAT------ACTGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacagggggatgcctgggtggctagcctcctgaattcatcttattctagGCAGCAGGGGCTACTGCAGGTTATGAAGGCTTACAACCTATACCCGGCCAGAGCAGGGATACTGTCACTGTCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCGCCAGAGgtccctgaccttgaacctgctatgagaccctcaacccctagtgatccgcg Alignment from Pairagon GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTA-CCGGCCAGAGCAGGGAT------ACTGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacagggggatgcctgggtggctagcctcctgaattcatcttattctagGCAGCAGGGGCTACTGCAGGTTATGAAGGCTTACAACCTATACCCGGCCAGAGCAGGGATACTGTCACTGTCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCGCCAGAGgtccctgaccttgaacctgctatgagaccctcaacccctagtgatccgcg Alignment from Exonerate_protein2genome GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTAC-CGGCCAGAGCAGGGATAC------TGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacagggggatgcctgggtggctagcctcctgaattcatcttattctagGCAGCAGGGGCTACTGCAGGTTATGAAGGCTTACAACCTATACCCGGCCAGAGCAGGGATACTGTCACTGTCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCGCCAGAGgtccctgaccttgaacctgctatgagaccctcaacccctagtgatccgcg Alignment from Exonerate_coding2genome GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTAC-CGGCCAGAGCAGGGATAC------TGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacagggggatgcctgggtggctagcctcctgaattcatcttattctagGCAGCAGGGGCTACTGCAGGTTATGAAGGCTTACAACCTATACCCGGCCAGAGCAGGGATACTGTCACTGTCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCGCCAGAGgtccctgaccttgaacctgctatgagaccctcaacccctagtgatccgcg Alignment from GeneWise GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTAC-CGGCCAGAGCAGGGATACTGC------CAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacagggggatgcctgggtggctagcctcctgaattcatcttattctagGCAGCAGGGGCTACTGCAGGTTATGAAGGCTTACAACCTATACCCGGCCAGAGCAGGGATACTGTCACTGTCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCGCCAGAGgtccctgaccttgaacctgctatgagaccctcaacccctagtgatccgcg #### Tcirg1_ID169_18 --> 2 - 2 Original Alignment agCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACT-GTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACtg ggcgggggtgtgacaggcattctcaagtagaaaattgtattcctttctagagCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTCGGCATGGGCCGAGAGATTGGTGTGGCGGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTGACTCGTGGCCATTCTGTTAGTGATGGAGGGGCTCTTAGCCTTCCTGCATGCTCTGCGGTTGCATtggtacaggcctctgtagtgggacttggcatggagggagtgggtggatttgt Alignment from CESAR agCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACT-GTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACtg ggcgggggtgtgacaggcattctcaagtagaaaattgtattcctttctagagCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTCGGCATGGGCCGAGAGATTGGTGTGGCGGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTGACTCGTGGCCATTCTGTTAGTGATGGAGGGGCTCTTAGCCTTCCTGCATGCTCTGCGGTTGCATtggtacaggcctctgtagtgggacttggcatggagggagtgggtggatttgt Alignment from Spaln_aa2Genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACT-GTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG ggcgggggtgtgacaggcattctcaagtagaaaattgtattcctttctagAGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTCGGCATGGGCCGAGAGATTGGTGTGGCGGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTGACTcGTGGCCATTCTGTTAGTGATGGAGGGGCTCTTAGCCTTCCTGCATGCTCTGCGGTTGCATTGgtacaggcctctgtagtgggacttggcatggagggagtgggtggatttgt Alignment from Spaln_nt2Genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACT-GTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG ggcgggggtgtgacaggcattctcaagtagaaaattgtattcctttctagAGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTCGGCATGGGCCGAGAGATTGGTGTGGCGGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTGACTCGTGGCCATTCTGTTAGTGATGGAGGGGCTCTTAGCCTTCCTGCATGCTCTGCGGTTGCATTGgtacaggcctctgtagtgggacttggcatggagggagtgggtggatttgt Alignment from Pairagon AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACT-GTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG ggcgggggtgtgacaggcattctcaagtagaaaattgtattcctttctagAGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTCGGCATGGGCCGAGAGATTGGTGTGGCGGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTGACTCGTGGCCATTCTGTTAGTGATGGAGGGGCTCTTAGCCTTCCTGCATGCTCTGCGGTTGCATTGgtacaggcctctgtagtgggacttggcatggagggagtgggtggatttgt Alignment from Exonerate_protein2genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACT-GTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG ggcgggggtgtgacaggcattctcaagtagaaaattgtattcctttctagAGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTCGGCATGGGCCGAGAGATTGGTGTGGCGGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTGACTCGTGGCCATTCTGTTAGTGATGGAGGGGCTCTTAGCCTTCCTGCATGCTCTGCGGTTGCATTGgtacaggcctctgtagtgggacttggcatggagggagtgggtggatttgt Alignment from Exonerate_coding2genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACT-GTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG ggcgggggtgtgacaggcattctcaagtagaaaattgtattcctttctagAGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTCGGCATGGGCCGAGAGATTGGTGTGGCGGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTGACTCGTGGCCATTCTGTTAGTGATGGAGGGGCTCTTAGCCTTCCTGCATGCTCTGCGGTTGCATTGgtacaggcctctgtagtgggacttggcatggagggagtgggtggatttgt Alignment from GeneWise AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACT-GTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG ggcgggggtgtgacaggcattctcaagtagaaaattgtattcctttctagAGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTCGGCATGGGCCGAGAGATTGGTGTGGCGGCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTGACTCGTGGCCATTCTGTTAGTGATGGAGGGGCTCTTAGCCTTCCTGCATGCTCTGCGGTTGCATTGgtacaggcctctgtagtgggacttggcatggagggagtgggtggatttgt #### Tcirg1_ID170_17 --> 0 - 1 Original Alignment TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTC-TGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCc gaaggcctgccaggtcaggctattgtctctgccttgtcctttatttaaagTTTGTCCCTTCTGAGATCTTCATGCATCGAGCAATCCACACCATTGAGTTCCTGTCTTGGCTGCATCTCCAACACAGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTGGCCCATGCTcgtaagtgacctttctctcagggtcatattacaatatcctacctggtgcca Alignment from CESAR TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTC-TGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCc gaaggcctgccaggtcaggctattgtctctgccttgtcctttatttaaagTTTGTCCCTTCTGAGATCTTCATGCATCGAGCAATCCACACCATTGAGTTCCTGTCTTGGCTGCATCTCCAACACAGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTGGCCCATGCTcgtaagtgacctttctctcagggtcatattacaatatcctacctggtgcca Alignment from Spaln_aa2Genome TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTC-TGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gaaggcctgccaggtcaggctattgtctctgccttgtcctttatttaaagTTTGTCCCTTCTGAGATCTTCATGCATCGAGCAATCCACACCATTGAGTTCcTGTCTTGGCTGCATCTCCAACACAGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTGGCCCATGCTCgtaagtgacctttctctcagggtcatattacaatatcctacctggtgcca Alignment from Spaln_nt2Genome TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTT-CTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gaaggcctgccaggtcaggctattgtctctgccttgtcctttatttaaagTTTGTCCCTTCTGAGATCTTCATGCATCGAGCAATCCACACCATTGAGTTCCTGTCTTGGCTGCATCTCCAACACAGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTGGCCCATGCTCgtaagtgacctttctctcagggtcatattacaatatcctacctggtgcca Alignment from Pairagon TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTT-CTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gaaggcctgccaggtcaggctattgtctctgccttgtcctttatttaaagTTTGTCCCTTCTGAGATCTTCATGCATCGAGCAATCCACACCATTGAGTTCCTGTCTTGGCTGCATCTCCAACACAGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTGGCCCATGCTCgtaagtgacctttctctcagggtcatattacaatatcctacctggtgcca Alignment from Exonerate_protein2genome TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTC-TGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gaaggcctgccaggtcaggctattgtctctgccttgtcctttatttaaagTTTGTCCCTTCTGAGATCTTCATGCATCGAGCAATCCACACCATTGAGTTCCTGTCTTGGCTGCATCTCCAACACAGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTGGCCCATGCTCgtaagtgacctttctctcagggtcatattacaatatcctacctggtgcca Alignment from Exonerate_coding2genome TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTC-TGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC gaaggcctgccaggtcaggctattgtctctgccttgtcctttatttaaagTTTGTCCCTTCTGAGATCTTCATGCATCGAGCAATCCACACCATTGAGTTCCTGTCTTGGCTGCATCTCCAACACAGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTGGCCCATGCTCgtaagtgacctttctctcagggtcatattacaatatcctacctggtgcca Alignment from GeneWise --------------------------------------------------TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAG-TTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGGCCCATGCCC GAAGGCCTGCCAGGTCAGGCTATTGTCTCTGCCTTGTCCTTTATTTAAAGTTTGTCCCTTCTGAGATCTTCATGCATCGAGCAATCCACACCATTGAGTTCCTGTCTTGGCTGCATCTCCAACACAGCCTCTTACCTGCGGCTTTGGGCCTTGAGCCTGGCCCATGCTCgtaagtgacctttctctcagggtcatattacaatatcctacctggtgcca #### Tcirg1_ID172_15 --> 0 - 0 Original Alignment GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACC-GTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gtaactgattccatacactgtacatgggctgagggaccttgttcttgcagGAAGTGGTACAGTACGTTCTGGTGGTCCTGGCTTTGGCTACTCGTCCCTATCCTACTGCTGGGCACACCCTTGTACCTCCTACGCCAGCACCGACACAGAAGAAACACTCAAAGAAGA---GCAGGCCAGCAGgtaagaacacagggattggaggcagcatgagtggtgacctctgtaacctc Alignment from CESAR GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACC-GTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gtaactgattccatacactgtacatgggctgagggaccttgttcttgcagGAAGTGGTACAGTACGTTCTGGTGGTCCTGGCTTTGGCTACTCGTCCCTATCCTACTGCTGGGCACACCCTTGTACCTCCTACGCCAGCACCGACACAGAAGAAACACTCAAAGAAGA---GCAGGCCAGCAGgtaagaacacagggattggaggcagcatgagtggtgacctctgtaacctc Alignment from Spaln_aa2Genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACCGTT-CCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gtaactgattccatacactgtacatgggctgagggaccttgttcttgcagGAAGTGGTACAGTACGTTCTGGTGGTCCTGGCTTTGGCTACTCGTcCCTATCCTACTGCTGGGCACACCCTTGTACCTCCTACGCCAGCACCGACACAGAAGAAACACTCAAAGAAGA---GCAGGCCAGCAGgtaagaacacagggattggaggcagcatgagtggtgacctctgtaacctc Alignment from Spaln_nt2Genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTAC-CGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gtaactgattccatacactgtacatgggctgagggaccttgttcttgcagGAAGTGGTACAGTACGTTCTGGTGGTCCTGGCTTTGGCTACTCGTCCCTATCCTACTGCTGGGCACACCCTTGTACCTCCTACGCCAGCACCGACACAGAAGAAACACTCAAAGAAG---AGCAGGCCAGCAGgtaagaacacagggattggaggcagcatgagtggtgacctctgtaacctc Alignment from Pairagon GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTAC-CGTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gtaactgattccatacactgtacatgggctgagggaccttgttcttgcagGAAGTGGTACAGTACGTTCTGGTGGTCCTGGCTTTGGCTACTCGTCCCTATCCTACTGCTGGGCACACCCTTGTACCTCCTACGCCAGCACCGACACAGAAGAAACACTCAAAGAAG---AGCAGGCCAGCAGgtaagaacacagggattggaggcagcatgagtggtgacctctgtaacctc Alignment from Exonerate_protein2genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACC-GTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gtaactgattccatacactgtacatgggctgagggaccttgttcttgcagGAAGTGGTACAGTACGTTCTGGTGGTCCTGGCTTTGGCTACTCGTCCCTATCCTACTGCTGGGCACACCCTTGTACCTCCTACGCCAGCACCGACACAGAAGAAACACTCAAAGAAGA---GCAGGCCAGCAGgtaagaacacagggattggaggcagcatgagtggtgacctctgtaacctc Alignment from Exonerate_coding2genome GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACC-GTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gtaactgattccatacactgtacatgggctgagggaccttgttcttgcagGAAGTGGTACAGTACGTTCTGGTGGTCCTGGCTTTGGCTACTCGTCCCTATCCTACTGCTGGGCACACCCTTGTACCTCCTACGCCAGCACCGACACAGAAGAAACACTCAAAGAAGA---GCAGGCCAGCAGgtaagaacacagggattggaggcagcatgagtggtgacctctgtaacctc Alignment from GeneWise GAAGTGGTACAGTACGTGCTGGTGGTCCTGGCTTTGGCTACC-GTTCCTATCCTGTTGCTGGGCACACCCTTGTACCTGCTGCGCCAGCACCGCCACAGAAGAAACACTCAGAGAAGGCCAGCAGGCCAGCAG gtaactgattccatacactgtacatgggctgagggaccttgttcttgcagGAAGTGGTACAGTACGTTCTGGTGGTCCTGGCTTTGGCTACTCGTCCCTATCCTACTGCTGGGCACACCCTTGTACCTCCTACGCCAGCACCGACACAGAAGAAACACTCAAAGAAGA---GCAGGCCAGCAGgtaagaacacagggattggaggcagcatgagtggtgacctctgtaacctc #### Tcirg1_ID176_11 --> 0 - 2 Original Alignment ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTG-CTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGag ttccaggacccccagatcttgcagaccaatcttattttaattttttacagATCTGGCAGACCTTCTTTGGAGGTCAATACCTACTCCTCCCTCATGGGTCTGTTCTCTGTCTACACTGGCTTTATCTCCACTGAGTGTTTCAGCCAGGCGACTACTATTTTTCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGctgtgagtcctacaacctttcctatgcagccagggcacctgaccaactgtgt Alignment from CESAR ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTG-CTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGag ttccaggacccccagatcttgcagaccaatcttattttaattttttacagATCTGGCAGACCTTCTTTGGAGGTCAATACCTACTCCTCCCTCATGGGTCTGTTCTCTGTCTACACTGGCTTTATCTCCACTGAGTGTTTCAGCCAGGCGACTACTATTTTTCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGctgtgagtcctacaacctttcctatgcagccagggcacctgaccaactgtgt Alignment from Spaln_aa2Genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTG-CTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG ttccaggacccccagatcttgcagaccaatcttattttaattttttacagATCTGGCAGACCTTCTTTGGAGGTCAATACCTACTCCTCcCTCATGGGTCTGTTCTCTGTCTACACTGGCTTTATCTCCACTGAGTGTTTCAGCCAGGCGACTACTATTTTTCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGCTgtgagtcctacaacctttcctatgcagccagggcacctgaccaactgtgt Alignment from Spaln_nt2Genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGC-TCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG ttccaggacccccagatcttgcagaccaatcttattttaattttttacagATCTGGCAGACCTTCTTTGGAGGTCAATACCTACTCCTCCCTCATGGGTCTGTTCTCTGTCTACACTGGCTTTATCTCCACTGAGTGTTTCAGCCAGGCGACTACTATTTTTCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGCTgtgagtcctacaacctttcctatgcagccagggcacctgaccaactgtgt Alignment from Pairagon ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCT-GCTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGG---------------------------------------------------- ttccaggacccccagatcttgcagaccaatcttattttaattttttacagATCTGGCAGACCTTCTTTGGAGGTCAATACCTACTCCTCCCTCATGGGTCTGTTCTCTGTCTACACTGGCTTTATCTCCACTGAGTGTTTCAGCCAGGCGACTACTATTTTTCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGCTGTGAGTCCTACAACCTTTCCTATGCAGCCAGGGCACCTGACCAACTGTGT Alignment from Exonerate_protein2genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTG-CTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG ttccaggacccccagatcttgcagaccaatcttattttaattttttacagATCTGGCAGACCTTCTTTGGAGGTCAATACCTACTCCTCCCTCATGGGTCTGTTCTCTGTCTACACTGGCTTTATCTCCACTGAGTGTTTCAGCCAGGCGACTACTATTTTTCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGCTgtgagtcctacaacctttcctatgcagccagggcacctgaccaactgtgt Alignment from Exonerate_coding2genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTG-CTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG ttccaggacccccagatcttgcagaccaatcttattttaattttttacagATCTGGCAGACCTTCTTTGGAGGTCAATACCTACTCCTCCCTCATGGGTCTGTTCTCTGTCTACACTGGCTTTATCTCCACTGAGTGTTTCAGCCAGGCGACTACTATTTTTCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGCTgtgagtcctacaacctttcctatgcagccagggcacctgaccaactgtgt Alignment from GeneWise ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTG-CTCATGGGTCTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG ttccaggacccccagatcttgcagaccaatcttattttaattttttacagATCTGGCAGACCTTCTTTGGAGGTCAATACCTACTCCTCCCTCATGGGTCTGTTCTCTGTCTACACTGGCTTTATCTCCACTGAGTGTTTCAGCCAGGCGACTACTATTTTTCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGCTgtgagtcctacaacctttcctatgcagccagggcacctgaccaactgtgt #### Tcirg1_ID179_8 --> 0 - 0 Original Alignment GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTC-AACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA ctaatagctccctcaaggatttcctgattgacattgcatttatcttttagGTCTTGGGGGAGACAGACCGGTTCTTGAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCCGTCTACCTAACCCTCCAACCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTTTGGTGTGCTGCGAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtaagcatccagcccagaggcctgctcctttcctcctaggcctgctcctt Alignment from CESAR GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTC-AACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA ctaatagctccctcaaggatttcctgattgacattgcatttatcttttagGTCTTGGGGGAGACAGACCGGTTCTTGAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCCGTCTACCTAACCCTCCAACCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTTTGGTGTGCTGCGAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtaagcatccagcccagaggcctgctcctttcctcctaggcctgctcctt Alignment from Spaln_aa2Genome GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTC-AACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA ctaatagctccctcaaggatttcctgattgacattgcatttatcttttagGTCTTGGGGGAGACAGACCGGTTCTTGAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCCGTCTACCTAACCCTCcAACCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTTTGGTGTGCTGCGAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtaagcatccagcccagaggcctgctcctttcctcctaggcctgctcctt Alignment from Spaln_nt2Genome GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCT-CAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA ctaatagctccctcaaggatttcctgattgacattgcatttatcttttagGTCTTGGGGGAGACAGACCGGTTCTTGAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCCGTCTACCTAACCCTCCAACCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTTTGGTGTGCTGCGAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtaagcatccagcccagaggcctgctcctttcctcctaggcctgctcctt Alignment from Pairagon GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCT-CAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA ctaatagctccctcaaggatttcctgattgacattgcatttatcttttagGTCTTGGGGGAGACAGACCGGTTCTTGAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCCGTCTACCTAACCCTCCAACCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTTTGGTGTGCTGCGAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtaagcatccagcccagaggcctgctcctttcctcctaggcctgctcctt Alignment from Exonerate_protein2genome GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTC-AACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA ctaatagctccctcaaggatttcctgattgacattgcatttatcttttagGTCTTGGGGGAGACAGACCGGTTCTTGAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCCGTCTACCTAACCCTCCAACCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTTTGGTGTGCTGCGAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtaagcatccagcccagaggcctgctcctttcctcctaggcctgctcctt Alignment from Exonerate_coding2genome GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTC-AACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA ctaatagctccctcaaggatttcctgattgacattgcatttatcttttagGTCTTGGGGGAGACAGACCGGTTCTTGAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCCGTCTACCTAACCCTCCAACCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTTTGGTGTGCTGCGAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtaagcatccagcccagaggcctgctcctttcctcctaggcctgctcctt Alignment from GeneWise GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACC-CTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA ctaatagctccctcaaggatttcctgattgacattgcatttatcttttagGTCTTGGGGGAGACAGACCGGTTCTTGAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCCGTCTACCTAACCCTCCAACCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTTTGGTGTGCTGCGAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtaagcatccagcccagaggcctgctcctttcctcctaggcctgctcctt #### Tcirg1_ID183_4 --> 0 - 2 Original Alignment GTGGCAGCTGACCAT-ACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCaa aggtatggggcctcaagatatacatgcctccatgcccctctctgccctagGTGGCAGCTGATCATCACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCTGACCTGAAAGTCaagtggtatggggcagcttatcttttatgggctccccacaagtgcttcctgt Alignment from CESAR GTGGCAGCTGACCAT-ACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCaa aggtatggggcctcaagatatacatgcctccatgcccctctctgccctagGTGGCAGCTGATCATCACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCTGACCTGAAAGTCaagtggtatggggcagcttatcttttatgggctccccacaagtgcttcctgt Alignment from Spaln_aa2Genome GTGGCAGCTGACCAT-ACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggtatggggcctcaagatatacatgcctccatgcccctctctgccctagGTGGCAGCTGATCATcACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCTGACCTGAAAGTCAAgtggtatggggcagcttatcttttatgggctccccacaagtgcttcctgt Alignment from Spaln_nt2Genome GTGGCAGCTGACCAT-ACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggtatggggcctcaagatatacatgcctccatgcccctctctgccctagGTGGCAGCTGATCATCACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCTGACCTGAAAGTCAAgtggtatggggcagcttatcttttatgggctccccacaagtgcttcctgt Alignment from Pairagon GTGGCAGCTGACCAT-ACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggtatggggcctcaagatatacatgcctccatgcccctctctgccctagGTGGCAGCTGATCATCACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCTGACCTGAAAGTCAAgtggtatggggcagcttatcttttatgggctccccacaagtgcttcctgt Alignment from Exonerate_protein2genome GTGGCAGCTGACCAT-ACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggtatggggcctcaagatatacatgcctccatgcccctctctgccctagGTGGCAGCTGATCATCACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCTGACCTGAAAGTCAAgtggtatggggcagcttatcttttatgggctccccacaagtgcttcctgt Alignment from Exonerate_coding2genome GTGGCAGCTGACCAT-ACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggtatggggcctcaagatatacatgcctccatgcccctctctgccctagGTGGCAGCTGATCATCACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCTGACCTGAAAGTCAAgtggtatggggcagcttatcttttatgggctccccacaagtgcttcctgt Alignment from GeneWise GTGGCAGCTGACCATACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggtatggggcctcaagatatacatgcctccatgcccctctctgccctaggtggcagCTGATCATC------ACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCTGACCTGAAAGTCAAgtggtatggggcagcttatcttttatgggctccccacaagtgcttcctgt #### Tcirg1_ID184_3 --> 2 - 0 Original Alignment ccTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCG-GCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaatttcctccaaccctttttttcttttaacttggcagccTTCTTGAGGGAAGAAGTGCCACGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTACCAGCACCACCTCCACGAGACCTACTGCGCATCCAGGAGGAGACGGATCGCTTGGCCCCGGAGCTTCGGGATGTTCATGGCAATCAAGAGGCACTGCGGGCCCAGCTGCACCAGCTACGACTTTACTCACGCTGTGCTGGGCCAGAGCCACAGTCCGCCAgtaaggcccagccagagcaaaaagcaggtatggggcctcaagatatacat Alignment from CESAR ccTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCG-GCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaatttcctccaaccctttttttcttttaacttggcagccTTCTTGAGGGAAGAAGTGCCACGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTACCAGCACCACCTCCACGAGACCTACTGCGCATCCAGGAGGAGACGGATCGCTTGGCCCCGGAGCTTCGGGATGTTCATGGCAATCAAGAGGCACTGCGGGCCCAGCTGCACCAGCTACGACTTTACTCACGCTGTGCTGGGCCAGAGCCACAGTCCGCCAgtaaggcccagccagagcaaaaagcaggtatggggcctcaagatatacat Alignment from Spaln_aa2Genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCG-GCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaatttcctccaaccctttttttcttttaacttggcagCCTTCTTGAGGGAAGAAGTGCCACGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTACCAGCACCACCTCCACGAGACCTACTGCGCATCCAGGAGGAGACGGATCGCTTGGCCCCGGAGCTTCGGGATGTTCATGGCAATCAAGAGGCACTGCGGGCCCAGCTGCACCAGCTACGACTTTACTCAcGCTGTGCTGGGCCAGAGCCACAGTCCGCCAgtaaggcccagccagagcaaaaagcaggtatggggcctcaagatatacat Alignment from Spaln_nt2Genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCG-GCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaatttcctccaaccctttttttcttttaacttggcagCCTTCTTGAGGGAAGAAGTGCCACGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTACCAGCACCACCTCCACGAGACCTACTGCGCATCCAGGAGGAGACGGATCGCTTGGCCCCGGAGCTTCGGGATGTTCATGGCAATCAAGAGGCACTGCGGGCCCAGCTGCACCAGCTACGACTTTACTCACGCTGTGCTGGGCCAGAGCCACAGTCCGCCAgtaaggcccagccagagcaaaaagcaggtatggggcctcaagatatacat Alignment from Pairagon CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCG-GCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaatttcctccaaccctttttttcttttaacttggcagCCTTCTTGAGGGAAGAAGTGCCACGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTACCAGCACCACCTCCACGAGACCTACTGCGCATCCAGGAGGAGACGGATCGCTTGGCCCCGGAGCTTCGGGATGTTCATGGCAATCAAGAGGCACTGCGGGCCCAGCTGCACCAGCTACGACTTTACTCACGCTGTGCTGGGCCAGAGCCACAGTCCGCCAgtaaggcccagccagagcaaaaagcaggtatggggcctcaagatatacat Alignment from Exonerate_protein2genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCG-GCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaatttcctccaaccctttttttcttttaacttggcagCCTTCTTGAGGGAAGAAGTGCCACGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTACCAGCACCACCTCCACGAGACCTACTGCGCATCCAGGAGGAGACGGATCGCTTGGCCCCGGAGCTTCGGGATGTTCATGGCAATCAAGAGGCACTGCGGGCCCAGCTGCACCAGCTACGACTTTACTCACGCTGTGCTGGGCCAGAGCCACAGTCCGCCAgtaaggcccagccagagcaaaaagcaggtatggggcctcaagatatacat Alignment from Exonerate_coding2genome CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCACTCG-GCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaatttcctccaaccctttttttcttttaacttggcagCCTTCTTGAGGGAAGAAGTGCCACGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTACCAGCACCACCTCCACGAGACCTACTGCGCATCCAGGAGGAGACGGATCGCTTGGCCCCGGAGCTTCGGGATGTTCATGGCAATCAAGAGGCACTGCGGGCCCAGCTGCACCAGCTACGACTTTACTCACGCTGTGCTGGGCCAGAGCCACAGTCCGCCAgtaaggcccagccagagcaaaaagcaggtatggggcctcaagatatacat Alignment from GeneWise CCTTCTTGCGGGAAGAAGTGCAGCGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTGCCAGCACCACCTCCCCGAGACCTGCTGCGCATCCAGGAGGAAACGGATCGCTTGGCCCAGGAGCTTCGGGATGTTCGTGGCAATCAGCAGGCACTGCGGGCCCAGCTGCACCAGCTGCGGCTTCAC-TCGGCTGTGCTGGGCCAGAGCCACAGCCCGCCG cataaccctgtggaatttcctccaaccctttttttcttttaacttggcagCCTTCTTGAGGGAAGAAGTGCCACGGGCAGGTCTGACGCTGGCCCCACCTGAGGGGACACTACCAGCACCACCTCCACGAGACCTACTGCGCATCCAGGAGGAGACGGATCGCTTGGCCCCGGAGCTTCGGGATGTTCATGGCAATCAAGAGGCACTGCGGGCCCAGCTGCACCAGCTACGACTTTACTCACGCTGTGCTGGGCCAGAGCCACAGTCCGCCAgtaaggcccagccagagcaaaaagcaggtatggggcctcaagatatacat #### Tcirg1_ID185_2 --> 0 - 1 Original Alignment CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGG-CGCTGCGAGGAACTGGAGAAGACGTTTa atcccttcccagaggttctgatacatattgacctgttcctttgttttcagTTCAATGAATCTGTGAGTGCATTCCAGAGACGCTTTGTGGTAGATGTCCGGCCGCTGCGAGGAACTGGAAAAGACGTTTagtgaggtggacccattcacatcccatggcatgcttggtctgaaggagagt Alignment from CESAR CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGG-CGCTGCGAGGAACTGGAGAAGACGTTTa atcccttcccagaggttctgatacatattgacctgttcctttgttttcagTTCAATGAATCTGTGAGTGCATTCCAGAGACGCTTTGTGGTAGATGTCCGGCCGCTGCGAGGAACTGGAAAAGACGTTTagtgaggtggacccattcacatcccatggcatgcttggtctgaaggagagt Alignment from Spaln_aa2Genome CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGG-CGCTGCGAGGAACTGGAGAAGACGTTTA atcccttcccagaggttctgatacatattgacctgttcctttgttttcagTTCAATGAATCTGTGAGTGCATTCCAGAGACGCTTTGTGGTAGATGTCCGGcCGCTGCGAGGAACTGGAAAAGACGTTTAgtgaggtggacccattcacatcccatggcatgcttggtctgaaggagagt Alignment from Spaln_nt2Genome CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGG-CGCTGCGAGGAACTGGAGAAGACGTTTA atcccttcccagaggttctgatacatattgacctgttcctttgttttcagTTCAATGAATCTGTGAGTGCATTCCAGAGACGCTTTGTGGTAGATGTCCGGCCGCTGCGAGGAACTGGAAAAGACGTTTAgtgaggtggacccattcacatcccatggcatgcttggtctgaaggagagt Alignment from Pairagon CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGG-CGCTGCGAGGAACTGGAGAAGACGTTTA atcccttcccagaggttctgatacatattgacctgttcctttgttttcagTTCAATGAATCTGTGAGTGCATTCCAGAGACGCTTTGTGGTAGATGTCCGGCCGCTGCGAGGAACTGGAAAAGACGTTTAgtgaggtggacccattcacatcccatggcatgcttggtctgaaggagagt Alignment from Exonerate_protein2genome CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGG-CGCTGCGAGGAACTGGAGAAGACGTTTA atcccttcccagaggttctgatacatattgacctgttcctttgttttcagTTCAATGAATCTGTGAGTGCATTCCAGAGACGCTTTGTGGTAGATGTCCGGCCGCTGCGAGGAACTGGAAAAGACGTTTAgtgaggtggacccattcacatcccatggcatgcttggtctgaaggagagt Alignment from Exonerate_coding2genome CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGG-CGCTGCGAGGAACTGGAGAAGACGTTTA atcccttcccagaggttctgatacatattgacctgttcctttgttttcagTTCAATGAATCTGTGAGTGCATTCCAGAGACGCTTTGTGGTAGATGTCCGGCCGCTGCGAGGAACTGGAAAAGACGTTTAgtgaggtggacccattcacatcccatggcatgcttggtctgaaggagagt Alignment from GeneWise CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTC-CGGCGCTGCGAGGAACTGGAGAAGACGTTTA atcccttcccagaggttctgatacatattgacctgttcctttgttttcagTTCAATGAATCTGTGAGTGCATTCCAGAGACGCTTTGTGGTAGATGTCCGGCCGCTGCGAGGAACTGGAAAAGACGTTTAgtgaggtggacccattcacatcccatggcatgcttggtctgaaggagagt #### Tctn3_ID7999_2 --> 2 - 2 Original Alignment ctTTACCGATCTGTGTCTGTGACTTGACTCCGGGTACCTGCGATTTAAACTGCTGCTGTGAC-AAGGACTGCGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAag caggaaaactttgagtgagttccatctttctttctctcgtctctccctagctTTACCAATCTGTGTCTGTGACCTGACTCCAGGTACCTGTGATTTAAACTGCTGCTGTGACCAAGGACTGTGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAaggtaagttgtggtgcccctccggtggaggagtgcgagctcctgcgcactgt Alignment from CESAR ctTTACCGATCTGTGTCTGTGACTTGACTCCGGGTACCTGCGATTTAAACTGCTGCTGTGAC-AAGGACTGCGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAag caggaaaactttgagtgagttccatctttctttctctcgtctctccctagctTTACCAATCTGTGTCTGTGACCTGACTCCAGGTACCTGTGATTTAAACTGCTGCTGTGACCAAGGACTGTGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAaggtaagttgtggtgcccctccggtggaggagtgcgagctcctgcgcactgt Alignment from Spaln_aa2Genome CTTTACCGATCTGTGTCTGTGACTTGACTCCGGGTACCTGCGATTTAAACTGCTGCTGTGAC-AAGGACTGCGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAG caggaaaactttgagtgagttccatctttctttctctcgtctctccctagCTTTACCAATCTGTGTCTGTGACCTGACTCCAGGTACCTGTGATTTAAACTGCTGCTGTGACcAAGGACTGTGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAGgtaagttgtggtgcccctccggtggaggagtgcgagctcctgcgcactgt Alignment from Spaln_nt2Genome CTTTACCGATCTGTGTCTGTGACTTGACTCCGGGTACCTGCGATTTAAACTGCTGCTGTGA-CAAGGACTGCGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAG caggaaaactttgagtgagttccatctttctttctctcgtctctccctagCTTTACCAATCTGTGTCTGTGACCTGACTCCAGGTACCTGTGATTTAAACTGCTGCTGTGACCAAGGACTGTGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAGgtaagttgtggtgcccctccggtggaggagtgcgagctcctgcgcactgt Alignment from Pairagon CTTTACCGATCTGTGTCTGTGACTTGACTCCGGGTACCTGCGATTTAAACTGCTGCTGTGA-CAAGGACTGCGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAG caggaaaactttgagtgagttccatctttctttctctcgtctctccctagCTTTACCAATCTGTGTCTGTGACCTGACTCCAGGTACCTGTGATTTAAACTGCTGCTGTGACCAAGGACTGTGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAGgtaagttgtggtgcccctccggtggaggagtgcgagctcctgcgcactgt Alignment from Exonerate_protein2genome CTTTACCGATCTGTGTCTGTGACTTGACTCCGGGTACCTGCGATTTAAACTGCTGCTGTGAC-AAGGACTGCGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAG caggaaaactttgagtgagttccatctttctttctctcgtctctccctagCTTTACCAATCTGTGTCTGTGACCTGACTCCAGGTACCTGTGATTTAAACTGCTGCTGTGACCAAGGACTGTGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAGgtaagttgtggtgcccctccggtggaggagtgcgagctcctgcgcactgt Alignment from Exonerate_coding2genome CTTTACCGATCTGTGTCTGTGACTTGACTCCGGGTACCTGCGATTTAAACTGCTGCTGTGAC-AAGGACTGCGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAG caggaaaactttgagtgagttccatctttctttctctcgtctctccctagCTTTACCAATCTGTGTCTGTGACCTGACTCCAGGTACCTGTGATTTAAACTGCTGCTGTGACCAAGGACTGTGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAGgtaagttgtggtgcccctccggtggaggagtgcgagctcctgcgcactgt Alignment from GeneWise CTTTACCGATCTGTGTCTGTGACTTGACTCCGGGTACCTGCGATTTAAACTGCTGCTGTGAC-AAGGACTGCGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAG caggaaaactttgagtgagttccatctttctttctctcgtctctccctagCTTTACCAATCTGTGTCTGTGACCTGACTCCAGGTACCTGTGATTTAAACTGCTGCTGTGACCAAGGACTGTGATCTTCTCCATCCCAGAACAGTCTTTTCCTTCTGTCTTCCTGGTAGTGTAAGgtaagttgtggtgcccctccggtggaggagtgcgagctcctgcgcactgt #### Tex40_ID1868_4 --> 0 - 1 Original Alignment CTGCCTCTGCCTCTGATGGAGCTCATG-GAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCa ggaccacttcagctccataggactggttaaacctgtttggtccttcctagCTGCCTCTCCCCCTCATGGAGTTCATGCGAGAGTGAAGTTTTGTATATCCTCAAAAAAGCCCTCATTagtaaatactgcaccctacccctagcttccacaaaagaccctgtggtggct Alignment from CESAR CTGCCTCTGCCTCTGATGGAGCTCATG-GAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCa ggaccacttcagctccataggactggttaaacctgtttggtccttcctagCTGCCTCTCCCCCTCATGGAGTTCATGCGAGAGTGAAGTTTTGTATATCCTCAAAAAAGCCCTCATTagtaaatactgcaccctacccctagcttccacaaaagaccctgtggtggct Alignment from Spaln_aa2Genome CTGCCTCTGCCTCTGATGGAGCTCATG-GAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCA ggaccacttcagctccataggactggttaaacctgtttggtccttcctagCTGCCTCTCCCCCTCATGGAGTTCATGcGAGAGTGAAGTTTTGTATATCCTCAAAAAAGCCCTCATTAgtaaatactgcaccctacccctagcttccacaaaagaccctgtggtggct Alignment from Spaln_nt2Genome CTGCCTCTGCCTCTGATGGAGCTCATG-GAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCA ggaccacttcagctccataggactggttaaacctgtttggtccttcctagCTGCCTCTCCCCCTCATGGAGTTCATGCGAGAGTGAAGTTTTGTATATCCTCAAAAAAGCCCTCATTAgtaaatactgcaccctacccctagcttccacaaaagaccctgtggtggct Alignment from Pairagon CTGCCTCTGCCTCTGATGGAGCTCATG-GAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCA ggaccacttcagctccataggactggttaaacctgtttggtccttcctagCTGCCTCTCCCCCTCATGGAGTTCATGCGAGAGTGAAGTTTTGTATATCCTCAAAAAAGCCCTCATTAgtaaatactgcaccctacccctagcttccacaaaagaccctgtggtggct Alignment from Exonerate_protein2genome CTGCCTCTGCCTCTGATGGAGCTCATG-GAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCA ggaccacttcagctccataggactggttaaacctgtttggtccttcctagCTGCCTCTCCCCCTCATGGAGTTCATGCGAGAGTGAAGTTTTGTATATCCTCAAAAAAGCCCTCATTAgtaaatactgcaccctacccctagcttccacaaaagaccctgtggtggct Alignment from Exonerate_coding2genome CTGCCTCTGCCTCTGATGGAGCTCATG-GAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCA ggaccacttcagctccataggactggttaaacctgtttggtccttcctagCTGCCTCTCCCCCTCATGGAGTTCATGCGAGAGTGAAGTTTTGTATATCCTCAAAAAAGCCCTCATTAgtaaatactgcaccctacccctagcttccacaaaagaccctgtggtggct Alignment from GeneWise CTGCCTCTGCCTCTGATGGAGCTCATG-GAGACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCA ggaccacttcagctccataggactggttaaacctgtttggtccttcctagCTGCCTCTCCCCCTCATGGAGTTCATGCGAGAGTGAAGTTTTGTATATCCTCAAAAAAGCCCTCATTAgtaaatactgcaccctacccctagcttccacaaaagaccctgtggtggct #### Tle4_ID3625_13 --> 2 - 0 Original Alignment caTCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCA-ACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaaaaaggtgcaactaccattttctcattctcgtttccttccctcagcgTCAAGCCTGAGGACCCCAATAGCTGTACCTTGTCCATATCCACACCCCATTTGGGATCGTGCCCCATGCTGGTATGAATGGAGAGCTGACCAGCCCTGGAGCTGCATATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCCGCTACTGCTGCAGCTGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtgagtttacatgcatttatagttgtttcagaatgcacagcattcttcat Alignment from CESAR caTCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCA-ACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaaaaaggtgcaactaccattttctcattctcgtttccttccctcagcgTCAAGCCTGAGGACCCCAATAGCTGTACCTTGTCCATATCCACACCCCATTTGGGATCGTGCCCCATGCTGGTATGAATGGAGAGCTGACCAGCCCTGGAGCTGCATATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCCGCTACTGCTGCAGCTGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtgagtttacatgcatttatagttgtttcagaatgcacagcattcttcat Alignment from Spaln_aa2Genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCA-ACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaaaaaggtgcaactaccattttctcattctcgtttccttccctcagCGTCAAGCCTGAGGACCCCAATAGCTGTACCTTGTCCATATCCAcACCCCATTTGGGATCGTGCCCCATGCTGGTATGAATGGAGAGCTGACCAGCCCTGGAGCTGCATATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCCGCTACTGCTGCAGCTGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtgagtttacatgcatttatagttgtttcagaatgcacagcattcttcat Alignment from Spaln_nt2Genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCA-ACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaaaaaggtgcaactaccattttctcattctcgtttccttccctcagCGTCAAGCCTGAGGACCCCAATAGCTGTACCTTGTCCATATCCACACCCCATTTGGGATCGTGCCCCATGCTGGTATGAATGGAGAGCTGACCAGCCCTGGAGCTGCATATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCCGCTACTGCTGCAGCTGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtgagtttacatgcatttatagttgtttcagaatgcacagcattcttcat Alignment from Pairagon CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCA-ACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaaaaaggtgcaactaccattttctcattctcgtttccttccctcagCGTCAAGCCTGAGGACCCCAATAGCTGTACCTTGTCCATATCCACACCCCATTTGGGATCGTGCCCCATGCTGGTATGAATGGAGAGCTGACCAGCCCTGGAGCTGCATATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCCGCTACTGCTGCAGCTGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtgagtttacatgcatttatagttgtttcagaatgcacagcattcttcat Alignment from Exonerate_protein2genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCA-ACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaaaaaggtgcaactaccattttctcattctcgtttccttccctcagCGTCAAGCCTGAGGACCCCAATAGCTGTACCTTGTCCATATCCACACCCCATTTGGGATCGTGCCCCATGCTGGTATGAATGGAGAGCTGACCAGCCCTGGAGCTGCATATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCCGCTACTGCTGCAGCTGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtgagtttacatgcatttatagttgtttcagaatgcacagcattcttcat Alignment from Exonerate_coding2genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCA-ACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaaaaaggtgcaactaccattttctcattctcgtttccttccctcagCGTCAAGCCTGAGGACCCCAATAGCTGTACCTTGTCCATATCCACACCCCATTTGGGATCGTGCCCCATGCTGGTATGAATGGAGAGCTGACCAGCCCTGGAGCTGCATATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCCGCTACTGCTGCAGCTGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtgagtttacatgcatttatagttgtttcagaatgcacagcattcttcat Alignment from GeneWise CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCA-ACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG actgaaaaaggtgcaactaccattttctcattctcgtttccttccctcagCGTCAAGCCTGAGGACCCCAATAGCTGTACCTTGTCCATATCCACACCCCATTTGGGATCGTGCCCCATGCTGGTATGAATGGAGAGCTGACCAGCCCTGGAGCTGCATATGCTGGGCTCCACAACATCTCCCCCCAGATGAGTGCCGCTACTGCTGCAGCTGCAGCAGCAGCAGCCTATGGAAGATCACCTGTGgtgagtttacatgcatttatagttgtttcagaatgcacagcattcttcat #### Tm7sf2_ID1412_8 --> 2 - 1 Original Alignment ttATTGGTTACTACATCTTC-CGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTg aaggcttggaatcctaccccaccatctgcccacgcccctccccgacacagttATTGGTTATTACATCTTCCCGAGGGGCCAACTCCGAGAAAAACACATTCAGGCAGAATCCTTCTGAGCCCAGTGTGGCTggtaatatgggtctcttagagattatgcttaatcgaactggagggctttgt Alignment from CESAR ttATTGGTTACTACATCTTC-CGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTg aaggcttggaatcctaccccaccatctgcccacgcccctccccgacacagttATTGGTTATTACATCTTCCCGAGGGGCCAACTCCGAGAAAAACACATTCAGGCAGAATCCTTCTGAGCCCAGTGTGGCTggtaatatgggtctcttagagattatgcttaatcgaactggagggctttgt Alignment from Spaln_aa2Genome TTATTGGTTACTACATCTTC-CGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG aaggcttggaatcctaccccaccatctgcccacgcccctccccgacacagTTATTGGTTATTACATCTTCcCGAGGGGCCAACTCCGAGAAAAACACATTCAGGCAGAATCCTTCTGAGCCCAGTGTGGCTGgtaatatgggtctcttagagattatgcttaatcgaactggagggctttgt Alignment from Spaln_nt2Genome TTATTGGTTACTACATCTT-CCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG aaggcttggaatcctaccccaccatctgcccacgcccctccccgacacagTTATTGGTTATTACATCTTCCCGAGGGGCCAACTCCGAGAAAAACACATTCAGGCAGAATCCTTCTGAGCCCAGTGTGGCTGgtaatatgggtctcttagagattatgcttaatcgaactggagggctttgt Alignment from Pairagon TTATTGGTTACTACATCTT-CCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG aaggcttggaatcctaccccaccatctgcccacgcccctccccgacacagTTATTGGTTATTACATCTTCCCGAGGGGCCAACTCCGAGAAAAACACATTCAGGCAGAATCCTTCTGAGCCCAGTGTGGCTGgtaatatgggtctcttagagattatgcttaatcgaactggagggctttgt Alignment from Exonerate_protein2genome TTATTGGTTACTACATCTTC-CGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG aaggcttggaatcctaccccaccatctgcccacgcccctccccgacacagTTATTGGTTATTACATCTTCCCGAGGGGCCAACTCCGAGAAAAACACATTCAGGCAGAATCCTTCTGAGCCCAGTGTGGCTGgtaatatgggtctcttagagattatgcttaatcgaactggagggctttgt Alignment from Exonerate_coding2genome TTATTGGTTACTACATCTTC-CGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG aaggcttggaatcctaccccaccatctgcccacgcccctccccgacacagTTATTGGTTATTACATCTTCCCGAGGGGCCAACTCCGAGAAAAACACATTCAGGCAGAATCCTTCTGAGCCCAGTGTGGCTGgtaatatgggtctcttagagattatgcttaatcgaactggagggctttgt Alignment from GeneWise TTATTGGTTACTACATCTTC-CGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTGGT------------------------------------------------ aaggcttggaatcctaccccaccatctgcccacgcccctccccgacacagTTATTGGTTATTACATCTTCCCGAGGGGCCAACTCCGAGAAAAACACATTCAGGCAGAATCCTTCTGAGCCCAGTGTGGCTGGTAATATGGGTCTCTTAGAGATTATGCTTAATCGAACTGGAGGGCTTTGT #### Tm7sf2_ID1417_3 --> 0 - 1 Original Alignment GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGC-TACCCTATTAATg taccctgggaaatgatccttggcctgttatttgtcctggtcccttgacagGTAGCCGAAGGCTTGGAACTGAAGGACAAGAGTCGCCTGCGTCTACCCTATTAATggtgagtgaggttcccccccctccacgaatcacagttaaggtgtgggttcc Alignment from CESAR GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGC-TACCCTATTAATg taccctgggaaatgatccttggcctgttatttgtcctggtcccttgacagGTAGCCGAAGGCTTGGAACTGAAGGACAAGAGTCGCCTGCGTCTACCCTATTAATggtgagtgaggttcccccccctccacgaatcacagttaaggtgtgggttcc Alignment from Spaln_aa2Genome GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGC-TACCCTATTAATG taccctgggaaatgatccttggcctgttatttgtcctggtcccttgacagGTAGCCGAAGGCTTGGAACTGAAGGACAAGAGTCGCCTGCGTcTACCCTATTAATGgtgagtgaggttcccccccctccacgaatcacagttaaggtgtgggttcc Alignment from Spaln_nt2Genome GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCG-CTACCCTATTAATG taccctgggaaatgatccttggcctgttatttgtcctggtcccttgacagGTAGCCGAAGGCTTGGAACTGAAGGACAAGAGTCGCCTGCGTCTACCCTATTAATGgtgagtgaggttcccccccctccacgaatcacagttaaggtgtgggttcc Alignment from Pairagon GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCG-CTACCCTATTAATG taccctgggaaatgatccttggcctgttatttgtcctggtcccttgacagGTAGCCGAAGGCTTGGAACTGAAGGACAAGAGTCGCCTGCGTCTACCCTATTAATGgtgagtgaggttcccccccctccacgaatcacagttaaggtgtgggttcc Alignment from Exonerate_protein2genome GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGC-TACCCTATTAATG taccctgggaaatgatccttggcctgttatttgtcctggtcccttgacagGTAGCCGAAGGCTTGGAACTGAAGGACAAGAGTCGCCTGCGTCTACCCTATTAATGgtgagtgaggttcccccccctccacgaatcacagttaaggtgtgggttcc Alignment from Exonerate_coding2genome GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGC-TACCCTATTAATG taccctgggaaatgatccttggcctgttatttgtcctggtcccttgacagGTAGCCGAAGGCTTGGAACTGAAGGACAAGAGTCGCCTGCGTCTACCCTATTAATGgtgagtgaggttcccccccctccacgaatcacagttaaggtgtgggttcc Alignment from GeneWise GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGC taccctgggaaatgatccttggcctgttatttgtcctggtcccttgacagGTAGCCGAAGGCTTGGAACTGAAGGACAAGAGTCGCCTGCgtctaccctattaatggtgagtgaggttcccccccctccacgaatcacagttaaggtgtgggttcc #### Trim8_ID9936_5 --> 1 - 1 Original Alignment gACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGG-AAGATGCTAGAAg catgggtgacttgcccccctcacagctgtttttgtcgttttcctccccaggACCCAGACCTGCACAAGCAGCAGCCTCTCTCCCCCTAAGATTGGCCACCTGAACTCCAAACTGTTTCTGAATGAGGTGACCAAGAAGGAGAAGCAGTTGCGGCAAGATGCTTGAAggtatgctgttaagggcccttgtgcaggggtgatggccagccagcacccac Alignment from CESAR gACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGG-AAGATGCTAGAAg catgggtgacttgcccccctcacagctgtttttgtcgttttcctccccaggACCCAGACCTGCACAAGCAGCAGCCTCTCTCCCCCTAAGATTGGCCACCTGAACTCCAAACTGTTTCTGAATGAGGTGACCAAGAAGGAGAAGCAGTTGCGGCAAGATGCTTGAAggtatgctgttaagggcccttgtgcaggggtgatggccagccagcacccac Alignment from Spaln_aa2Genome GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGG-AAGATGCTAGAAG catgggtgacttgcccccctcacagctgtttttgtcgttttcctccccagGACCCAGACCTGCACAAGCAGCAGCCTCTCTCCCCCTAAGATTGGCCACCTGAACTCCAAACTGTTTCTGAATGAGGTGACCAAGAAGGAGAAGCAGTTGCGGcAAGATGCTTGAAGgtatgctgttaagggcccttgtgcaggggtgatggccagccagcacccac Alignment from Spaln_nt2Genome GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGG-AAGATGCTAGAAG catgggtgacttgcccccctcacagctgtttttgtcgttttcctccccagGACCCAGACCTGCACAAGCAGCAGCCTCTCTCCCCCTAAGATTGGCCACCTGAACTCCAAACTGTTTCTGAATGAGGTGACCAAGAAGGAGAAGCAGTTGCGGCAAGATGCTTGAAGgtatgctgttaagggcccttgtgcaggggtgatggccagccagcacccac Alignment from Pairagon GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGG-AAGATGCTAGAAG catgggtgacttgcccccctcacagctgtttttgtcgttttcctccccagGACCCAGACCTGCACAAGCAGCAGCCTCTCTCCCCCTAAGATTGGCCACCTGAACTCCAAACTGTTTCTGAATGAGGTGACCAAGAAGGAGAAGCAGTTGCGGCAAGATGCTTGAAGgtatgctgttaagggcccttgtgcaggggtgatggccagccagcacccac Alignment from Exonerate_protein2genome GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGG-AAGATGCTAGAAG catgggtgacttgcccccctcacagctgtttttgtcgttttcctccccagGACCCAGACCTGCACAAGCAGCAGCCTCTCTCCCCCTAAGATTGGCCACCTGAACTCCAAACTGTTTCTGAATGAGGTGACCAAGAAGGAGAAGCAGTTGCGGCAAGATGCTTGAAGgtatgctgttaagggcccttgtgcaggggtgatggccagccagcacccac Alignment from Exonerate_coding2genome GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGG-AAGATGCTAGAAG catgggtgacttgcccccctcacagctgtttttgtcgttttcctccccagGACCCAGACCTGCACAAGCAGCAGCCTCTCTCCCCCTAAGATTGGCCACCTGAACTCCAAACTGTTTCTGAATGAGGTGACCAAGAAGGAGAAGCAGTTGCGGCAAGATGCTTGAAGgtatgctgttaagggcccttgtgcaggggtgatggccagccagcacccac Alignment from GeneWise GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAG-- catgggtgacttgcccccctcacagctgtttttgtcgttttcctccccagGACCCAGACCTGCACAAGCAGCAGCCTCTCTCCCCCTAAGATTGGCCACCTGAACTCCAAACTGTTTCTGAATGAGGTGACCAAGAAGGAGAAGCAgttgcggcaagatgcttgaaggtatgctgttaagggcccttgtgcaggggtgatggccagccagcacccac #### Trmt112_ID1861_2 --> 0 - 0 Original Alignment GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTG-GCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC gacctggacctacctcactgaatgtttttaacctgagctctttcccctagGCCACTGAAGTCCGCATCAACCCTGTGGAGTTTAACCCAGAGTTAGTGCGCGCGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGACACTgtaaataccctgcccttcctgttgtatcttaggggcaggctcaggctctg Alignment from CESAR GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTG-GCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC gacctggacctacctcactgaatgtttttaacctgagctctttcccctagGCCACTGAAGTCCGCATCAACCCTGTGGAGTTTAACCCAGAGTTAGTGCGCGCGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGACACTgtaaataccctgcccttcctgttgtatcttaggggcaggctcaggctctg Alignment from Spaln_aa2Genome GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTG-GCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC gacctggacctacctcactgaatgtttttaacctgagctctttcccctagGCCACTGAAGTCCGCATCAACCCTGTGGAGTTTAACCCAGAGTTAGTGcGCGCGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGACACTgtaaataccctgcccttcctgttgtatcttaggggcaggctcaggctctg Alignment from Spaln_nt2Genome GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTG-GCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC gacctggacctacctcactgaatgtttttaacctgagctctttcccctagGCCACTGAAGTCCGCATCAACCCTGTGGAGTTTAACCCAGAGTTAGTGCGCGCGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGACACTgtaaataccctgcccttcctgttgtatcttaggggcaggctcaggctctg Alignment from Pairagon GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTG-GCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC gacctggacctacctcactgaatgtttttaacctgagctctttcccctagGCCACTGAAGTCCGCATCAACCCTGTGGAGTTTAACCCAGAGTTAGTGCGCGCGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGACACTgtaaataccctgcccttcctgttgtatcttaggggcaggctcaggctctg Alignment from Exonerate_protein2genome GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTG-GCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC gacctggacctacctcactgaatgtttttaacctgagctctttcccctagGCCACTGAAGTCCGCATCAACCCTGTGGAGTTTAACCCAGAGTTAGTGCGCGCGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGACACTgtaaataccctgcccttcctgttgtatcttaggggcaggctcaggctctg Alignment from Exonerate_coding2genome GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTG-GCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC gacctggacctacctcactgaatgtttttaacctgagctctttcccctagGCCACTGAAGTCCGCATCAACCCTGTGGAGTTTAACCCAGAGTTAGTGCGCGCGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGACACTgtaaataccctgcccttcctgttgtatcttaggggcaggctcaggctctg Alignment from GeneWise GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTG-GCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC gacctggacctacctcactgaatgtttttaacctgagctctttcccctagGCCACTGAAGTCCGCATCAACCCTGTGGAGTTTAACCCAGAGTTAGTGCGCGCGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGACACTgtaaataccctgcccttcctgttgtatcttaggggcaggctcaggctctg #### Trmt112_ID1862_3 --> 0 - 0 Original Alignment TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAG-ATGCACCACGTGTTGCTTGAG aggtcttggtgctcgtgtgcctcctgaccaaaccccgtttctcatttcagTTGAACTTAGCCGAAGTGCCCAGAGAGCCAACTGAGGGCTATGAGCATGACGAGACATTTTTGAGGAAGCATGCATCATGTGTTGCTTGAGgtgagtatcctggatcattgtgcccaggcctcccatggttaccagtgttc Alignment from CESAR TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAG-ATGCACCACGTGTTGCTTGAG aggtcttggtgctcgtgtgcctcctgaccaaaccccgtttctcatttcagTTGAACTTAGCCGAAGTGCCCAGAGAGCCAACTGAGGGCTATGAGCATGACGAGACATTTTTGAGGAAGCATGCATCATGTGTTGCTTGAGgtgagtatcctggatcattgtgcccaggcctcccatggttaccagtgttc Alignment from Spaln_aa2Genome TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAG-ATGCACCACGTGTTGCTTGAG aggtcttggtgctcgtgtgcctcctgaccaaaccccgtttctcatttcagTTGAACTTAGCCGAAGTGCCCAGAGAGCCAACTGAGGGCTATGAGCATGACGAGACATTTTTGAGGAAGcATGCATCATGTGTTGCTTGAGgtgagtatcctggatcattgtgcccaggcctcccatggttaccagtgttc Alignment from Spaln_nt2Genome TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAG-ATGCACCACGTGTTGCTTGAG aggtcttggtgctcgtgtgcctcctgaccaaaccccgtttctcatttcagTTGAACTTAGCCGAAGTGCCCAGAGAGCCAACTGAGGGCTATGAGCATGACGAGACATTTTTGAGGAAGCATGCATCATGTGTTGCTTGAGgtgagtatcctggatcattgtgcccaggcctcccatggttaccagtgttc Alignment from Pairagon TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAG-ATGCACCACGTGTTGCTTGAG aggtcttggtgctcgtgtgcctcctgaccaaaccccgtttctcatttcagTTGAACTTAGCCGAAGTGCCCAGAGAGCCAACTGAGGGCTATGAGCATGACGAGACATTTTTGAGGAAGCATGCATCATGTGTTGCTTGAGgtgagtatcctggatcattgtgcccaggcctcccatggttaccagtgttc Alignment from Exonerate_protein2genome TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAG-ATGCACCACGTGTTGCTTGAG aggtcttggtgctcgtgtgcctcctgaccaaaccccgtttctcatttcagTTGAACTTAGCCGAAGTGCCCAGAGAGCCAACTGAGGGCTATGAGCATGACGAGACATTTTTGAGGAAGCATGCATCATGTGTTGCTTGAGgtgagtatcctggatcattgtgcccaggcctcccatggttaccagtgttc Alignment from Exonerate_coding2genome TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGGAAG-ATGCACCACGTGTTGCTTGAG aggtcttggtgctcgtgtgcctcctgaccaaaccccgtttctcatttcagTTGAACTTAGCCGAAGTGCCCAGAGAGCCAACTGAGGGCTATGAGCATGACGAGACATTTTTGAGGAAGCATGCATCATGTGTTGCTTGAGgtgagtatcctggatcattgtgcccaggcctcccatggttaccagtgttc Alignment from GeneWise TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCACGACGAGACATTTTTGAGG-AAGATGCACCACGTGTTGCTTGAG aggtcttggtgctcgtgtgcctcctgaccaaaccccgtttctcatttcagTTGAACTTAGCCGAAGTGCCCAGAGAGCCAACTGAGGGCTATGAGCATGACGAGACATTTTTGAGGAAGCATGCATCATGTGTTGCTTGAGgtgagtatcctggatcattgtgcccaggcctcccatggttaccagtgttc #### Trpt1_ID1981_4 --> 0 - 1 Original Alignment GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTG-CCTGGGGACCCTGGTGTCATCAGCg gagtgcatgaaaggggtttctctgctgcctttgtggtgtgtatctcacagGTCCCTGAGTTGGAACTGACACCCCTGGAGACACCACAAGCCCTGCCCTTGGCACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCCATTCTACTAAAGGGTTTGTCACGCCAAGGAAGGACACGCATCCACCTGGCTTCAGGATTGCCCA---GACCCTGGTGTTATCAGTggtaattgtcacattacctagtctctcctccctggtctccaccagggatca Alignment from CESAR GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCg gagtgcatgaaaggggtttctctgctgcctttgtggtgtgtatctcacagGTCCCTGAGTTGGAACTGACACCCCTGGAGACACCACAAGCCCTGCCCTTGGCACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCCATTCTACTAAAGGGTTTGTCACGCCAAGGAAGGACACGCATCCACCTGGCTTCAGGATTGCCC--AGACCCTGGTGTTATCAGTggtaattgtcacattacctagtctctcctccctggtctccaccagggatca Alignment from Spaln_aa2Genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gagtgcatgaaaggggtttctctgctgcctttgtggtgtgtatctcacagGTCCCTGAGTTGGAACTGACACCCCTGGAGACACCACAAGCCCTGCCCTTGGCACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCCATTCTACTAAAGGGTTTGTCACGCCAAGGAAGGACACGCATCCACCTGGCTTCAGGATTGCCCA--GACCCTGGTGTTATCAGTGgtaattgtcacattacctagtctctcctccctggtctccaccagggatca Alignment from Spaln_nt2Genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gagtgcatgaaaggggtttctctgctgcctttgtggtgtgtatctcacagGTCCCTGAGTTGGAACTGACACCCCTGGAGACACCACAAGCCCTGCCCTTGGCACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCCATTCTACTAAAGGGTTTGTCACGCCAAGGAAGGACACGCATCCACCTGGCTTCAGGATTGCC--CAGACCCTGGTGTTATCAGTGgtaattgtcacattacctagtctctcctccctggtctccaccagggatca Alignment from Pairagon GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gagtgcatgaaaggggtttctctgctgcctttgtggtgtgtatctcacagGTCCCTGAGTTGGAACTGACACCCCTGGAGACACCACAAGCCCTGCCCTTGGCACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCCATTCTACTAAAGGGTTTGTCACGCCAAGGAAGGACACGCATCCACCTGGCTTCAGGATTGCCC--AGACCCTGGTGTTATCAGTGgtaattgtcacattacctagtctctcctccctggtctccaccagggatca Alignment from Exonerate_protein2genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTG-CCTGGGGACCCTGGTGTCATCAGCG gagtgcatgaaaggggtttctctgctgcctttgtggtgtgtatctcacagGTCCCTGAGTTGGAACTGACACCCCTGGAGACACCACAAGCCCTGCCCTTGGCACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCCATTCTACTAAAGGGTTTGTCACGCCAAGGAAGGACACGCATCCACCTGGCTTCAGGATTGCCCA---GACCCTGGTGTTATCAGTGgtaattgtcacattacctagtctctcctccctggtctccaccagggatca Alignment from Exonerate_coding2genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTG-CCTGGGGACCCTGGTGTCATCAGCG gagtgcatgaaaggggtttctctgctgcctttgtggtgtgtatctcacagGTCCCTGAGTTGGAACTGACACCCCTGGAGACACCACAAGCCCTGCCCTTGGCACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCCATTCTACTAAAGGGTTTGTCACGCCAAGGAAGGACACGCATCCACCTGGCTTCAGGATTGCCCA---GACCCTGGTGTTATCAGTGgtaattgtcacattacctagtctctcctccctggtctccaccagggatca Alignment from GeneWise GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gagtgcatgaaaggggtttctctgctgcctttgtggtgtgtatctcacagGTCCCTGAGTTGGAACTGACACCCCTGGAGACACCACAAGCCCTGCCCTTGGCACTAGTCCATGGTACATTCTGGAAGCACTGGCCATCCATTCTACTAAAGGGTTTGTCACGCCAAGGAAGGACACGCATCCACCTGGCTTCAGGATTGCCCA--GACCCTGGTGTTATCAGTGgtaattgtcacattacctagtctctcctccctggtctccaccagggatca #### Trpt1_ID1982_5 --> 2 - 1 Original Alignment gcATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCC-CTAGCCCTCACAg cacatagctatgcaggggaacagagagcaaattctttgttttttttctaggcATTCGACCAAATTGTGAAGTGACAGTGTTTATTGATGGGCCCCCTAGCCCTCACAggtaagaattgccccacagggctgaatcatccatgcctgtcatagaacgtg Alignment from CESAR gcATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCC-CTAGCCCTCACAg cacatagctatgcaggggaacagagagcaaattctttgttttttttctaggcATTCGACCAAATTGTGAAGTGACAGTGTTTATTGATGGGCCCCCTAGCCCTCACAggtaagaattgccccacagggctgaatcatccatgcctgtcatagaacgtg Alignment from Spaln_aa2Genome GCATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCC-CTAGCCCTCACAG cacatagctatgcaggggaacagagagcaaattctttgttttttttctagGCATTCGACCAAATTGTGAAGTGACAGTGTTTATTGATGGGCCCcCTAGCCCTCACAGgtaagaattgccccacagggctgaatcatccatgcctgtcatagaacgtg Alignment from Spaln_nt2Genome GCATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGAT-GGACCCCTAGCCCTCACAG cacatagctatgcaggggaacagagagcaaattctttgttttttttctagGCATTCGACCAAATTGTGAAGTGACAGTGTTTATTGATGGGCCCCCTAGCCCTCACAGgtaagaattgccccacagggctgaatcatccatgcctgtcatagaacgtg Alignment from Pairagon GCATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGA-CCCCTAGCCCTCACAG cacatagctatgcaggggaacagagagcaaattctttgttttttttctagGCATTCGACCAAATTGTGAAGTGACAGTGTTTATTGATGGGCCCCCTAGCCCTCACAGgtaagaattgccccacagggctgaatcatccatgcctgtcatagaacgtg Alignment from Exonerate_protein2genome GCATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGAT-GGACCCCTAGCCCTCACAG cacatagctatgcaggggaacagagagcaaattctttgttttttttctagGCATTCGACCAAATTGTGAAGTGACAGTGTTTATTGATGGGCCCCCTAGCCCTCACAGgtaagaattgccccacagggctgaatcatccatgcctgtcatagaacgtg Alignment from Exonerate_coding2genome GCATTCGTCCAAATTGT cacatagctatgcaggggaacagagagcaaattctttgttttttttctaggcattcgaccaaattgtgaagtgacagtgtttattgatgggccccctagccctcacaggtaagaattgccccacagggctgaatcatccatGCCTGTCATAGAACGTG Alignment from GeneWise GCATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGATGGACCC-CTAGCCCTCACAG cacatagctatgcaggggaacagagagcaaattctttgttttttttctagGCATTCGACCAAATTGTGAAGTGACAGTGTTTATTGATGGGCCCCCTAGCCCTCACAGgtaagaattgccccacagggctgaatcatccatgcctgtcatagaacgtg #### Tsga10ip_ID978_2 --> 0 - 2 Original Alignment ACCAACGCCAGACTCACTGCAAATCGGCGCTTC-TCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACag tcaagcagccctaatgaagagtaggaacgtccacctttctctatttccagACCAACGCCCGACTCACTGGAAATCGGCGCTTCCTCCCAGGTTCTGTCGGCACTGGGGGTAGACGAGGACCAGCTGCTAGCTGAGGCGGGTATTGCTGAGAGCACTCCCCGGAAGCACaggtgagaggggacaaggtcacctagtgttccctatgtcacacatgtgtatt Alignment from CESAR ACCAACGCCAGACTCACTGCAAATCGGCGCTTC-TCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACag tcaagcagccctaatgaagagtaggaacgtccacctttctctatttccagACCAACGCCCGACTCACTGGAAATCGGCGCTTCCTCCCAGGTTCTGTCGGCACTGGGGGTAGACGAGGACCAGCTGCTAGCTGAGGCGGGTATTGCTGAGAGCACTCCCCGGAAGCACaggtgagaggggacaaggtcacctagtgttccctatgtcacacatgtgtatt Alignment from Spaln_aa2Genome CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTC-TCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG tcaagcagccctaatgaagagtaggaacgtccacctttctctatttcCAGACCAACGCCCGACTCACTGGAAATCGGCGCTTCcTCCCAGGTTCTGTCGGCACTGGGGGTAGACGAGGACCAGCTGCTAGCTGAGGCGGGTATTGCTGAGAGCACTCCCCGGAAGCACAGgtgagaggggacaaggtcacctagtgttccctatgtcacacatgtgtatt Alignment from Spaln_nt2Genome CAGACCAACGCCAGACTCACTGCAAATCGGCGCTT-CTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG tcaagcagccctaatgaagagtaggaacgtccacctttctctatttcCAGACCAACGCCCGACTCACTGGAAATCGGCGCTTCCTCCCAGGTTCTGTCGGCACTGGGGGTAGACGAGGACCAGCTGCTAGCTGAGGCGGGTATTGCTGAGAGCACTCCCCGGAAGCACAGgtgagaggggacaaggtcacctagtgttccctatgtcacacatgtgtatt Alignment from Pairagon CAGACCAACGCCAGACTCACTGCAAATCGGCGCTT-CTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG tcaagcagccctaatgaagagtaggaacgtccacctttctctatttcCAGACCAACGCCCGACTCACTGGAAATCGGCGCTTCCTCCCAGGTTCTGTCGGCACTGGGGGTAGACGAGGACCAGCTGCTAGCTGAGGCGGGTATTGCTGAGAGCACTCCCCGGAAGCACAGgtgagaggggacaaggtcacctagtgttccctatgtcacacatgtgtatt Alignment from Exonerate_protein2genome CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTC-TCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG tcaagcagccctaatgaagagtaggaacgtccacctttctctatttcCAGACCAACGCCCGACTCACTGGAAATCGGCGCTTCCTCCCAGGTTCTGTCGGCACTGGGGGTAGACGAGGACCAGCTGCTAGCTGAGGCGGGTATTGCTGAGAGCACTCCCCGGAAGCACAGgtgagaggggacaaggtcacctagtgttccctatgtcacacatgtgtatt Alignment from Exonerate_coding2genome CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTC-TCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG tcaagcagccctaatgaagagtaggaacgtccacctttctctatttcCAGACCAACGCCCGACTCACTGGAAATCGGCGCTTCCTCCCAGGTTCTGTCGGCACTGGGGGTAGACGAGGACCAGCTGCTAGCTGAGGCGGGTATTGCTGAGAGCACTCCCCGGAAGCACAGgtgagaggggacaaggtcacctagtgttccctatgtcacacatgtgtatt Alignment from GeneWise CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTC-TCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG tcaagcagccctaatgaagagtaggaacgtccacctttctctatttcCAGACCAACGCCCGACTCACTGGAAATCGGCGCTTCCTCCCAGGTTCTGTCGGCACTGGGGGTAGACGAGGACCAGCTGCTAGCTGAGGCGGGTATTGCTGAGAGCACTCCCCGGAAGCACAGgtgagaggggacaaggtcacctagtgttccctatgtcacacatgtgtatt #### Ubxn1_ID2438_2 --> 1 - 2 Original Alignment gGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATC-GAGGCTGCGATGGATtg ttactacccccatggcttgcaggcactatcacttcctcttaccgttctaggGAGAAGGCTCTTGCCCTCACGGGGAACCACGGCATCCGAGGCTGCGATGGCTtggtgcgtagacaatctgcacagttggtgggtgattgggagctgctgcacaa Alignment from CESAR gGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATC-GAGGCTGCGATGGATtg ttactacccccatggcttgcaggcactatcacttcctcttaccgttctaggGAGAAGGCTCTTGCCCTCACGGGGAACCACGGCATCCGAGGCTGCGATGGCTtggtgcgtagacaatctgcacagttggtgggtgattgggagctgctgcacaa Alignment from Spaln_aa2Genome GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATC-GAGGCTGCGATGGATTG ttactacccccatggcttgcaggcactatcacttcctcttaccgttctagGGAGAAGGCTCTTGCCCTCACGGGGAACCACGGCATCcGAGGCTGCGATGGCTTGgtgcgtagacaatctgcacagttggtgggtgattgggagctgctgcacaa Alignment from Spaln_nt2Genome GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATC-GAGGCTGCGATGGATTG ttactacccccatggcttgcaggcactatcacttcctcttaccgttctagGGAGAAGGCTCTTGCCCTCACGGGGAACCACGGCATCCGAGGCTGCGATGGCTTGgtgcgtagacaatctgcacagttggtgggtgattgggagctgctgcacaa Alignment from Pairagon GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCAT-CGAGGCTGCGATGGATTG ttactacccccatggcttgcaggcactatcacttcctcttaccgttctagGGAGAAGGCTCTTGCCCTCACGGGGAACCACGGCATCCGAGGCTGCGATGGCTTGgtgcgtagacaatctgcacagttggtgggtgattgggagctgctgcacaa Alignment from Exonerate_protein2genome GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATC-GAGGCTGCGATGGATTG ttactacccccatggcttgcaggcactatcacttcctcttaccgttctagGGAGAAGGCTCTTGCCCTCACGGGGAACCACGGCATCCGAGGCTGCGATGGCTTGgtgcgtagacaatctgcacagttggtgggtgattgggagctgctgcacaa Alignment from Exonerate_coding2genome GGAGAAGGCTCTGGCCCTCACAGGGAACCAGGGCATC-GAGGCTGCGATGGATTG ttactacccccatggcttgcaggcactatcacttcctcttaccgttctagGGAGAAGGCTCTTGCCCTCACGGGGAACCACGGCATCCGAGGCTGCGATGGCTTGgtgcgtagacaatctgcacagttggtgggtgattgggagctgctgcacaa Alignment from GeneWise ttactacccccatggcttgcaggcactatcacttcctcttaccgttctagggagaaggctcttgccctcacggggaaccacggcatccgaggctgcgatggcttggtgcgtagacaatctgcacagttggtgggtgattgggagctgctgcacaa #### Ubxn1_ID2442_6 --> 1 - 0 Original Alignment aCAAAGGGTTCGAGAA-AAAATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG tttgtcttgggtccatgtctgctctataattctttaccttttgggtctagaCAAAGGGCTCGTGAACAAAATTGAAAGGGACAGAGCGGAGAGAGCTAAGAAGgtgagcgatcacaaagtcagggtatactggaggaggcatgctggttaatt Alignment from CESAR aCAAAGGGTTCGAGAA-AAAATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG tttgtcttgggtccatgtctgctctataattctttaccttttgggtctagaCAAAGGGCTCGTGAACAAAATTGAAAGGGACAGAGCGGAGAGAGCTAAGAAGgtgagcgatcacaaagtcagggtatactggaggaggcatgctggttaatt Alignment from Spaln_aa2Genome CAAAGGGTTCGAGAAAAAATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG tttgtcttgggtccatgtctgctctataattctttaccttttgggtctagACAAAGGGCTCGTGAACAAAATTGAAAGGGACAGAGCGGAGAGAGCTAAGAAGgtgagcgatcacaaagtcagggtatactggaggaggcatgctggttaatt Alignment from Spaln_nt2Genome ACAAAGGGTTCGAGAA-AAAATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG tttgtcttgggtccatgtctgctctataattctttaccttttgggtctagACAAAGGGCTCGTGAACAAAATTGAAAGGGACAGAGCGGAGAGAGCTAAGAAGgtgagcgatcacaaagtcagggtatactggaggaggcatgctggttaatt Alignment from Pairagon ACAAAGGGTTCGAGAA-AAAATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG tttgtcttgggtccatgtctgctctataattctttaccttttgggtctagACAAAGGGCTCGTGAACAAAATTGAAAGGGACAGAGCGGAGAGAGCTAAGAAGgtgagcgatcacaaagtcagggtatactggaggaggcatgctggttaatt Alignment from Exonerate_protein2genome ACAAAGGGTTCGAGAA-AAAATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG tttgtcttgggtccatgtctgctctataattctttaccttttgggtctagACAAAGGGCTCGTGAACAAAATTGAAAGGGACAGAGCGGAGAGAGCTAAGAAGgtgagcgatcacaaagtcagggtatactggaggaggcatgctggttaatt Alignment from Exonerate_coding2genome ACAAAGGGTTCGAGAA-AAAATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG tttgtcttgggtccatgtctgctctataattctttaccttttgggtctagACAAAGGGCTCGTGAACAAAATTGAAAGGGACAGAGCGGAGAGAGCTAAGAAGgtgagcgatcacaaagtcagggtatactggaggaggcatgctggttaatt Alignment from GeneWise --CAAAGGGTTCGAGAAAAAATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG tttgtcttgggtccatgtctgctctataattctttaccttttgggtctagACAAAGGGCTCGTGAACAAAATTGAAAGGGACAGAGCGGAGAGAGCTAAGAAGgtgagcgatcacaaagtcagggtatactggaggaggcatgctggttaatt #### Unc93b1_ID217_8 --> 0 - 0 Original Alignment GTGCTGGGCCTGTGTGGAGCCGCTTACCGGCCCACGGAAGAGATCGACCTGCGCAGCGTGGGCTGGGGCAACATC-TTCCAGCTGCCCTTCAAACACGTGCGTGACTTTCGCTTACGCCATCTGGTGCCCTTCTTTATCTACAGTGGCTTTGAGGTGCTCTTTGCCTGCACTGGTTTTGCCCTG tatctaggatgggatatctgttatagactgctttctgttcttctgcttagGTCCTGGGCCTGTGTGGAGCAGCTTACCGGACCACGGAGGAGATCGACCTGCGTAGTGTGGGCTGGGGTAACATCCTTCCAGTTGCCCTTCAAGCATGTACATGACTTTTGCTTACGCCACCTGGTGCCATTCTTTATCTACAGTGGCTTTGAGGTGCTCTTTGCCTGTACTGGTTTTGCACTGgtaagaacagacaatacatatggctcatatggctaaacttccagcataca Alignment from CESAR GTGCTGGGCCTGTGTGGAGCCGCTTACCGGCCCACGGAAGAGATCGACCTGCGCAGCGTGGGCTGGGGCAACATC-TTCCAGCTGCCCTTCAAACACGTGCGTGACTTTCGCTTACGCCATCTGGTGCCCTTCTTTATCTACAGTGGCTTTGAGGTGCTCTTTGCCTGCACTGGTTTTGCCCTG tatctaggatgggatatctgttatagactgctttctgttcttctgcttagGTCCTGGGCCTGTGTGGAGCAGCTTACCGGACCACGGAGGAGATCGACCTGCGTAGTGTGGGCTGGGGTAACATCCTTCCAGTTGCCCTTCAAGCATGTACATGACTTTTGCTTACGCCACCTGGTGCCATTCTTTATCTACAGTGGCTTTGAGGTGCTCTTTGCCTGTACTGGTTTTGCACTGgtaagaacagacaatacatatggctcatatggctaaacttccagcataca Alignment from Spaln_aa2Genome GTGCTGGGCCTGTGTGGAGCCGCTTACCGGCCCACGGAAGAGATCGACCTGCGCAGCGTGGGCTGGGGCAACATC-TTCCAGCTGCCCTTCAAACACGTGCGTGACTTTCGCTTACGCCATCTGGTGCCCTTCTTTATCTACAGTGGCTTTGAGGTGCTCTTTGCCTGCACTGGTTTTGCCCTG tatctaggatgggatatctgttatagactgctttctgttcttctgcttagGTCCTGGGCCTGTGTGGAGCAGCTTACCGGACCACGGAGGAGATCGACCTGCGTAGTGTGGGCTGGGGTAACATCcTTCCAGTTGCCCTTCAAGCATGTACATGACTTTTGCTTACGCCACCTGGTGCCATTCTTTATCTACAGTGGCTTTGAGGTGCTCTTTGCCTGTACTGGTTTTGCACTGgtaagaacagacaatacatatggctcatatggctaaacttccagcataca Alignment from Spaln_nt2Genome GTGCTGGGCCTGTGTGGAGCCGCTTACCGGCCCACGGAAGAGATCGACCTGCGCAGCGTGGGCTGGGGCAACAT-CTTCCAGCTGCCCTTCAAACACGTGCGTGACTTTCGCTTACGCCATCTGGTGCCCTTCTTTATCTACAGTGGCTTTGAGGTGCTCTTTGCCTGCACTGGTTTTGCCCTG tatctaggatgggatatctgttatagactgctttctgttcttctgcttagGTCCTGGGCCTGTGTGGAGCAGCTTACCGGACCACGGAGGAGATCGACCTGCGTAGTGTGGGCTGGGGTAACATCCTTCCAGTTGCCCTTCAAGCATGTACATGACTTTTGCTTACGCCACCTGGTGCCATTCTTTATCTACAGTGGCTTTGAGGTGCTCTTTGCCTGTACTGGTTTTGCACTGgtaagaacagacaatacatatggctcatatggctaaacttccagcataca Alignment from Pairagon GTGCTGGGCCTGTGTGGAGCCGCTTACCGGCCCACGGAAGAGATCGACCTGCGCAGCGTGGGCTGGGGCAACAT-CTTCCAGCTGCCCTTCAAACACGTGCGTGACTTTCGCTTACGCCATCTGGTGCCCTTCTTTATCTACAGTGGCTTTGAGGTGCTCTTTGCCTGCACTGGTTTTGCCCTG tatctaggatgggatatctgttatagactgctttctgttcttctgcttagGTCCTGGGCCTGTGTGGAGCAGCTTACCGGACCACGGAGGAGATCGACCTGCGTAGTGTGGGCTGGGGTAACATCCTTCCAGTTGCCCTTCAAGCATGTACATGACTTTTGCTTACGCCACCTGGTGCCATTCTTTATCTACAGTGGCTTTGAGGTGCTCTTTGCCTGTACTGGTTTTGCACTGgtaagaacagacaatacatatggctcatatggctaaacttccagcataca Alignment from Exonerate_protein2genome GTGCTGGGCCTGTGTGGAGCCGCTTACCGGCCCACGGAAGAGATCGACCTGCGCAGCGTGGGCTGGGGCAACATC-TTCCAGCTGCCCTTCAAACACGTGCGTGACTTTCGCTTACGCCATCTGGTGCCCTTCTTTATCTACAGTGGCTTTGAGGTGCTCTTTGCCTGCACTGGTTTTGCCCTG tatctaggatgggatatctgttatagactgctttctgttcttctgcttagGTCCTGGGCCTGTGTGGAGCAGCTTACCGGACCACGGAGGAGATCGACCTGCGTAGTGTGGGCTGGGGTAACATCCTTCCAGTTGCCCTTCAAGCATGTACATGACTTTTGCTTACGCCACCTGGTGCCATTCTTTATCTACAGTGGCTTTGAGGTGCTCTTTGCCTGTACTGGTTTTGCACTGgtaagaacagacaatacatatggctcatatggctaaacttccagcataca Alignment from Exonerate_coding2genome GTGCTGGGCCTGTGTGGAGCCGCTTACCGGCCCACGGAAGAGATCGACCTGCGCAGCGTGGGCTGGGGCAACATC-TTCCAGCTGCCCTTCAAACACGTGCGTGACTTTCGCTTACGCCATCTGGTGCCCTTCTTTATCTACAGTGGCTTTGAGGTGCTCTTTGCCTGCACTGGTTTTGCCCTG tatctaggatgggatatctgttatagactgctttctgttcttctgcttagGTCCTGGGCCTGTGTGGAGCAGCTTACCGGACCACGGAGGAGATCGACCTGCGTAGTGTGGGCTGGGGTAACATCCTTCCAGTTGCCCTTCAAGCATGTACATGACTTTTGCTTACGCCACCTGGTGCCATTCTTTATCTACAGTGGCTTTGAGGTGCTCTTTGCCTGTACTGGTTTTGCACTGgtaagaacagacaatacatatggctcatatggctaaacttccagcataca Alignment from GeneWise GTGCTGGGCCTGTGTGGAGCCGCTTACCGGCCCACGGAAGAGATCGACCTGCGCAGCGTGGGCTGGGGCAAC-ATCTTCCAGCTGCCCTTCAAACACGTGCGTGACTTTCGCTTACGCCATCTGGTGCCCTTCTTTATCTACAGTGGCTTTGAGGTGCTCTTTGCCTGCACTGGTTTTGCCCTG tatctaggatgggatatctgttatagactgctttctgttcttctgcttagGTCCTGGGCCTGTGTGGAGCAGCTTACCGGACCACGGAGGAGATCGACCTGCGTAGTGTGGGCTGGGGTAACATCCTTCCAGTTGCCCTTCAAGCATGTACATGACTTTTGCTTACGCCACCTGGTGCCATTCTTTATCTACAGTGGCTTTGAGGTGCTCTTTGCCTGTACTGGTTTTGCACTGgtaagaacagacaatacatatggctcatatggctaaacttccagcataca #### Vegfb_ID1956_4 --> 0 - 2 Original Alignment ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAA-GAACACAGCCAATGTGAATGCag ggacctgcttcccagcacttaccatcttttattttcctgtctctccacagATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAACGAACACAGCCAATGTGAATGCaggtgagtgccatgttcaggtcacaaagtgtagcatggggtggggctgcttg Alignment from CESAR ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAA-GAACACAGCCAATGTGAATGCag ggacctgcttcccagcacttaccatcttttattttcctgtctctccacagATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAACGAACACAGCCAATGTGAATGCaggtgagtgccatgttcaggtcacaaagtgtagcatggggtggggctgcttg Alignment from Spaln_aa2Genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAA-GAACACAGCCAATGTGAATGCAG ggacctgcttcccagcacttaccatcttttattttcctgtctctccacagATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAAcGAACACAGCCAATGTGAATGCAGgtgagtgccatgttcaggtcacaaagtgtagcatggggtggggctgcttg Alignment from Spaln_nt2Genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAA-GAACACAGCCAATGTGAATGCAG ggacctgcttcccagcacttaccatcttttattttcctgtctctccacagATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAACGAACACAGCCAATGTGAATGCAGgtgagtgccatgttcaggtcacaaagtgtagcatggggtggggctgcttg Alignment from Pairagon ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAA-GAACACAGCCAATGTGAATGCAG ggacctgcttcccagcacttaccatcttttattttcctgtctctccacagATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAACGAACACAGCCAATGTGAATGCAGgtgagtgccatgttcaggtcacaaagtgtagcatggggtggggctgcttg Alignment from Exonerate_protein2genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAA-GAACACAGCCAATGTGAATGCAG ggacctgcttcccagcacttaccatcttttattttcctgtctctccacagATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAACGAACACAGCCAATGTGAATGCAGgtgagtgccatgttcaggtcacaaagtgtagcatggggtggggctgcttg Alignment from Exonerate_coding2genome ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAA-GAACACAGCCAATGTGAATGCAG ggacctgcttcccagcacttaccatcttttattttcctgtctctccacagATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAACGAACACAGCCAATGTGAATGCAGgtgagtgccatgttcaggtcacaaagtgtagcatggggtggggctgcttg Alignment from GeneWise ATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAA-GAACACAGCCAATGTGAATGCAG ggacctgcttcccagcacttaccatcttttattttcctgtctctccacagATCCTCATGATCCAGTACCCGAGCAGTCAGCTGGGGGAGATGTCCCTGGAACGAACACAGCCAATGTGAATGCAGgtgagtgccatgttcaggtcacaaagtgtagcatggggtggggctgcttg #### Vegfb_ID1957_3 --> 2 - 0 Original Alignment tgGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAA-TGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG aaacaaggcagatatggacagatttcaatctgtctttccttcccttgcagtgGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGAAACTTATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGATGATGGCCTGGAACTGTGTGGCCACAGGGCAACATCAAGTCCGAATGCAAgtgagagggcctatggatcaggtgtattgaggagacaccgatgcttatca Alignment from CESAR tgGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAA-TGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG aaacaaggcagatatggacagatttcaatctgtctttccttcccttgcagtgGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGAAACTTATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGATGATGGCCTGGAACTGTGTGGCCACAGGGCAACATCAAGTCCGAATGCAAgtgagagggcctatggatcaggtgtattgaggagacaccgatgcttatca Alignment from Spaln_aa2Genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAA-TGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG aaacaaggcagatatggacagatttcaatctgtctttccttcccttgcagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGAAACTTATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGATGATGGCCTGGAAcTGTGTGGCCACAGGGCAACATCAAGTCCGAATGCAAgtgagagggcctatggatcaggtgtattgaggagacaccgatgcttatca Alignment from Spaln_nt2Genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAA-TGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG aaacaaggcagatatggacagatttcaatctgtctttccttcccttgcagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGAAACTTATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGATGATGGCCTGGAACTGTGTGGCCACAGGGCAACATCAAGTCCGAATGCAAgtgagagggcctatggatcaggtgtattgaggagacaccgatgcttatca Alignment from Pairagon TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAA-TGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG aaacaaggcagatatggacagatttcaatctgtctttccttcccttgcagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGAAACTTATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGATGATGGCCTGGAACTGTGTGGCCACAGGGCAACATCAAGTCCGAATGCAAgtgagagggcctatggatcaggtgtattgaggagacaccgatgcttatca Alignment from Exonerate_protein2genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAA-TGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG aaacaaggcagatatggacagatttcaatctgtctttccttcccttgcagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGAAACTTATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGATGATGGCCTGGAACTGTGTGGCCACAGGGCAACATCAAGTCCGAATGCAAgtgagagggcctatggatcaggtgtattgaggagacaccgatgcttatca Alignment from Exonerate_coding2genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAA-TGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG aaacaaggcagatatggacagatttcaatctgtctttccttcccttgcagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGAAACTTATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGATGATGGCCTGGAACTGTGTGGCCACAGGGCAACATCAAGTCCGAATGCAAgtgagagggcctatggatcaggtgtattgaggagacaccgatgcttatca Alignment from GeneWise TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTG---ACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTG-GAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG aaacaaggcagatatggacagatttcaatctgtctttccttcccttgcagTGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGCACCACTGAGCATGAAACTTATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTGGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGATGATGGCCTGGAACTGTGTGGCCACAGGGCAACATCAAGTCCGAATGCAAgtgagagggcctatggatcaggtgtattgaggagacaccgatgcttatca #### Vegfb_ID1958_2 --> 0 - 1 Original Alignment GCCCCTGTGTCC-CAGTTTGATGGCCCCAGCCACCAGAAGAAAg gccagccctttttgagtgcacctcgggccttctaactcttttgcttgcagGCCCCCGTGTCACCAGTTTGATGGCCCCAGCCACCAGAAGAAAggtaagtagagttataagctttccataagccagtacaaagaggggttagca Alignment from CESAR GCCCCTGTGTCC-CAGTTTGATGGCCCCAGCCACCAGAAGAAAg gccagccctttttgagtgcacctcgggccttctaactcttttgcttgcagGCCCCCGTGTCACCAGTTTGATGGCCCCAGCCACCAGAAGAAAggtaagtagagttataagctttccataagccagtacaaagaggggttagca Alignment from Spaln_aa2Genome CCCTGTGTCC---CAGTTTGATGGCCCCAGCCACCAGAAGAAAG gccagccctttttgagtgcacctcgggccttctaactcttttgcttgcagGCCCCCGTGTCACCAGTTTGATGGCCCCAGCCACCAGAAGAAAGgtaagtagagttataagctttccataagccagtacaaagaggggttagca Alignment from Spaln_nt2Genome GCCCCTGTGTC-CCAGTTTGATGGCCCCAGCCACCAGAAGAAAG gccagccctttttgagtgcacctcgggccttctaactcttttgcttgcagGCCCCCGTGTCACCAGTTTGATGGCCCCAGCCACCAGAAGAAAGgtaagtagagttataagctttccataagccagtacaaagaggggttagca Alignment from Pairagon GCCCCTGTGTC-CCAGTTTGATGGCCCCAGCCACCAGAAGAAAG gccagccctttttgagtgcacctcgggccttctaactcttttgcttgcagGCCCCCGTGTCACCAGTTTGATGGCCCCAGCCACCAGAAGAAAGgtaagtagagttataagctttccataagccagtacaaagaggggttagca Alignment from Exonerate_protein2genome GCCCCTGTGTCC-CAGTTTGATGGCCCCAGCCACCAGAAGAAAG gccagccctttttgagtgcacctcgggccttctaactcttttgcttgcagGCCCCCGTGTCACCAGTTTGATGGCCCCAGCCACCAGAAGAAAGgtaagtagagttataagctttccataagccagtacaaagaggggttagca Alignment from Exonerate_coding2genome GCCCCTGTGTCC-CAGTTTGATGGCCCCAGCCACCAGAAGAAAG gccagccctttttgagtgcacctcgggccttctaactcttttgcttgcagGCCCCCGTGTCACCAGTTTGATGGCCCCAGCCACCAGAAGAAAGgtaagtagagttataagctttccataagccagtacaaagaggggttagca Alignment from GeneWise gccagccctttttgagtgcacctcgggccttctaactcttttgcttgcaggcccccgtgtcaccagtttgatggccccagccaccagaagaaaggtaagtagagttataagctttccataagccagtacaaagaggggttagca #### Vldlr_ID5808_7 --> 2 - 1 Original Alignment tcAATCAGTGCCTGGGCCCTGGAAAGTTCAAGTGCAGAAGCGGGGAATGCATAGACATGAGCAAA-GTATGTGACCAGGAACAAGACTGCAGAGACTGGAGTGACGAGCCCCTGAAGGAATGCc acccctgtcagaacagcagtgcaactttgtcttcttccattttcttgtagttAATCAGTGCTTGGGCCCTGGAAAGTTCAAGTGCAGGAGTGGTGAATGCATAGACATGAGCAAACGTATGTGACCAGGAACAAGACTGCAGAGACTGGAGTGACGAGCCCCTGAAGGAATGCcgtaaacgagagggaggcttgcttggggccagtgctgagggattccattca Alignment from CESAR tcAATCAGTGCCTGGGCCCTGGAAAGTTCAAGTGCAGAAGCGGGGAATGCATAGACATGAGCAAA-GTATGTGACCAGGAACAAGACTGCAGAGACTGGAGTGACGAGCCCCTGAAGGAATGCc acccctgtcagaacagcagtgcaactttgtcttcttccattttcttgtagttAATCAGTGCTTGGGCCCTGGAAAGTTCAAGTGCAGGAGTGGTGAATGCATAGACATGAGCAAACGTATGTGACCAGGAACAAGACTGCAGAGACTGGAGTGACGAGCCCCTGAAGGAATGCcgtaaacgagagggaggcttgcttggggccagtgctgagggattccattca Alignment from Spaln_aa2Genome TCAATCAGTGCCTGGGCCCTGGAAAGTTCAAGTGCAGAAGCGGGGAATGCATAGACATGAGCAAA-GTATGTGACCAGGAACAAGACTGCAGAGACTGGAGTGACGAGCCCCTGAAGGAATGCC acccctgtcagaacagcagtgcaactttgtcttcttccattttcttgtagTTAATCAGTGCTTGGGCCCTGGAAAGTTCAAGTGCAGGAGTGGTGAATGCATAGACATGAGCAAAcGTATGTGACCAGGAACAAGACTGCAGAGACTGGAGTGACGAGCCCCTGAAGGAATGCCgtaaacgagagggaggcttgcttggggccagtgctgagggattccattca Alignment from Spaln_nt2Genome TCAATCAGTGCCTGGGCCCTGGAAAGTTCAAGTGCAGAAGCGGGGAATGCATAGACATGAGC-AAAGTATGTGACCAGGAACAAGACTGCAGAGACTGGAGTGACGAGCCCCTGAAGGAATGCC acccctgtcagaacagcagtgcaactttgtcttcttccattttcttgtagTTAATCAGTGCTTGGGCCCTGGAAAGTTCAAGTGCAGGAGTGGTGAATGCATAGACATGAGCAAACGTATGTGACCAGGAACAAGACTGCAGAGACTGGAGTGACGAGCCCCTGAAGGAATGCCgtaaacgagagggaggcttgcttggggccagtgctgagggattccattca Alignment from Pairagon TCAATCAGTGCCTGGGCCCTGGAAAGTTCAAGTGCAGAAGCGGGGAATGCATAGACATGAGCAAA-GTATGTGACCAGGAACAAGACTGCAGAGACTGGAGTGACGAGCCCCTGAAGGAATGCC acccctgtcagaacagcagtgcaactttgtcttcttccattttcttgtagTTAATCAGTGCTTGGGCCCTGGAAAGTTCAAGTGCAGGAGTGGTGAATGCATAGACATGAGCAAACGTATGTGACCAGGAACAAGACTGCAGAGACTGGAGTGACGAGCCCCTGAAGGAATGCCgtaaacgagagggaggcttgcttggggccagtgctgagggattccattca Alignment from Exonerate_protein2genome TCAATCAGTGCCTGGGCCCTGGAAAGTTCAAGTGCAGAAGCGGGGAATGCATAGACATGAGCAAA-GTATGTGACCAGGAACAAGACTGCAGAGACTGGAGTGACGAGCCCCTGAAGGAATGCC acccctgtcagaacagcagtgcaactttgtcttcttccattttcttgtagTTAATCAGTGCTTGGGCCCTGGAAAGTTCAAGTGCAGGAGTGGTGAATGCATAGACATGAGCAAACGTATGTGACCAGGAACAAGACTGCAGAGACTGGAGTGACGAGCCCCTGAAGGAATGCCgtaaacgagagggaggcttgcttggggccagtgctgagggattccattca Alignment from Exonerate_coding2genome TCAATCAGTGCCTGGGCCCTGGAAAGTTCAAGTGCAGAAGCGGGGAATGCATAGACATGAGCAAA-GTATGTGACCAGGAACAAGACTGCAGAGACTGGAGTGACGAGCCCCTGAAGGAATGCC acccctgtcagaacagcagtgcaactttgtcttcttccattttcttgtagTTAATCAGTGCTTGGGCCCTGGAAAGTTCAAGTGCAGGAGTGGTGAATGCATAGACATGAGCAAACGTATGTGACCAGGAACAAGACTGCAGAGACTGGAGTGACGAGCCCCTGAAGGAATGCCgtaaacgagagggaggcttgcttggggccagtgctgagggattccattca Alignment from GeneWise TCAATCAGTGCCTGGGCCCTGGAAAGTTCAAGTGCAGAAGCGGGGAATGCATAGACATGAGCAAA-GTATGTGACCAGGAACAAGACTGCAGAGACTGGAGTGACGAGCCCCTGAAGGAATGCC acccctgtcagaacagcagtgcaactttgtcttcttccattttcttgtagTTAATCAGTGCTTGGGCCCTGGAAAGTTCAAGTGCAGGAGTGGTGAATGCATAGACATGAGCAAACGTATGTGACCAGGAACAAGACTGCAGAGACTGGAGTGACGAGCCCCTGAAGGAATGCCgtaaacgagagggaggcttgcttggggccagtgctgagggattccattca #### Vldlr_ID5814_13 --> 2 - 0 Original Alignment acCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTT-GCACTCACCATATTTGAG gcacaagcttggggagaaagtagctgaattccccactgtcaaaccaacagacCTTGTCAAAAGCCGTCTCTACTGGCTGGACTCCAAGTTGCACATGCTCTCTAGTGTTGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCCCTCAAGTTCCTAGCTCATCCTCTTCGCACTCACTATATTTGAGgtgagtcttgtgatttttgtcaatgtgtgcatctgtgaagcagttctagg Alignment from CESAR acCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTT-GCACTCACCATATTTGAG gcacaagcttggggagaaagtagctgaattccccactgtcaaaccaacagacCTTGTCAAAAGCCGTCTCTACTGGCTGGACTCCAAGTTGCACATGCTCTCTAGTGTTGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCCCTCAAGTTCCTAGCTCATCCTCTTCGCACTCACTATATTTGAGgtgagtcttgtgatttttgtcaatgtgtgcatctgtgaagcagttctagg Alignment from Spaln_aa2Genome CTCGACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTT-GCACTCACCATATTTGAG caagcttggggagaaagtagctgaattccccactgtcaaaccaaca gACCTTGTCAAAAGCCGTCTCTACTGGCTGGACTCCAAGTTGCACATGCTCTCTAGTGTTGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCCCTCAAGTTCCTAGCTCATCCTCTTcGCACTCACTATATTTGAGgtgagtcttgtgatttttgtcaatgtgtgcatctgtgaagcagttctagg Alignment from Spaln_nt2Genome ACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTT-GCACTCACCATATTTGAG gcacaagcttggggagaaagtagctgaattccccactgtcaaaccaacagACCTTGTCAAAAGCCGTCTCTACTGGCTGGACTCCAAGTTGCACATGCTCTCTAGTGTTGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCCCTCAAGTTCCTAGCTCATCCTCTTCGCACTCACTATATTTGAGgtgagtcttgtgatttttgtcaatgtgtgcatctgtgaagcagttctagg Alignment from Pairagon ACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTT-GCACTCACCATATTTGAG gcacaagcttggggagaaagtagctgaattccccactgtcaaaccaacagACCTTGTCAAAAGCCGTCTCTACTGGCTGGACTCCAAGTTGCACATGCTCTCTAGTGTTGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCCCTCAAGTTCCTAGCTCATCCTCTTCGCACTCACTATATTTGAGgtgagtcttgtgatttttgtcaatgtgtgcatctgtgaagcagttctagg Alignment from Exonerate_protein2genome TCGACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTT-GCACTCACCATATTTGAG gcacaagcttggggagaaagtagctgaattccccactgtcaaaccaaCAGACCTTGTCAAAAGCCGTCTCTACTGGCTGGACTCCAAGTTGCACATGCTCTCTAGTGTTGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCCCTCAAGTTCCTAGCTCATCCTCTTCGCACTCACTATATTTGAGgtgagtcttgtgatttttgtcaatgtgtgcatctgtgaagcagttctagg Alignment from Exonerate_coding2genome TCGACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTT-GCACTCACCATATTTGAG gcacaagcttggggagaaagtagctgaattccccactgtcaaaccaaCAGACCTTGTCAAAAGCCGTCTCTACTGGCTGGACTCCAAGTTGCACATGCTCTCTAGTGTTGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCCCTCAAGTTCCTAGCTCATCCTCTTCGCACTCACTATATTTGAGgtgagtcttgtgatttttgtcaatgtgtgcatctgtgaagcagttctagg Alignment from GeneWise TCGACCTTGTCAAAAGCCGCCTCTACTGGCTGGATTCCAAGTTGCACATGCTCTCTAGTGTGGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCTCTGGAGTTCCTAGCTCATCCTCTT-GCACTCACCATATTTGAG gcacaagcttggggagaaagtagctgaattccccactgtcaaaccaacagAC---CTTGTCAAAAGCCGTCTCTACTGGCTGGACTCCAAGTTGCACATGCTCTCTAGTGTTGACCTGAATGGTCAAGATCGTAGGATAGTGCTCAAGTCCCTCAAGTTCCTAGCTCATCCTCTTCGCACTCACTATATTTGAGgtgagtcttgtgatttttgtcaatgtgtgcatctgtgaagcagttctagg #### Vps13a_ID4057_66 --> 0 - 1 Original Alignment GGTTTTGTAAGTGGCATTACAGGG-ATTGTTACAAAGCCAATTAAAg cttaacagaattatatgataatataactcttgttttgttttttttctcagGGTTTTGTAAGTGGTATTACGGGCCATTGTTACGAAGCCAATTAAAggtaagtgttgtaggcaccttggctgtcacatagctcacaagtgccattct Alignment from CESAR GGTTTTGTAAGTGGCATTACAGGG-ATTGTTACAAAGCCAATTAAAg cttaacagaattatatgataatataactcttgttttgttttttttctcagGGTTTTGTAAGTGGTATTACGGGCCATTGTTACGAAGCCAATTAAAggtaagtgttgtaggcaccttggctgtcacatagctcacaagtgccattct Alignment from Spaln_aa2Genome GGTTTTGTAAGTGGCATTACAGGG-ATTGTTACAAAGCCAATTAAAG cttaacagaattatatgataatataactcttgttttgttttttttctcagGGTTTTGTAAGTGGTATTACGGGCcATTGTTACGAAGCCAATTAAAGgtaagtgttgtaggcaccttggctgtcacatagctcacaagtgccattct Alignment from Spaln_nt2Genome G CCAATTAAAG cttaacagaattatatgataatataactcttgttttgttttttttctcagGgttttgtaagtggtattacgggccattgttacgaagCCAATTAAAGgtaagtgttgtaggcaccttggctgtcacatagctcacaagtgccattct Alignment from Pairagon GGTTTTGTAAGTGGCATTACAGG-GATTGTTACAAAGCCAATTAAAG cttaacagaattatatgataatataactcttgttttgttttttttctcagGGTTTTGTAAGTGGTATTACGGGCCATTGTTACGAAGCCAATTAAAGgtaagtgttgtaggcaccttggctgtcacatagctcacaagtgccattct Alignment from Exonerate_protein2genome GGTTTTGTAAGTGGCATTACAGGG-ATTGTTACAAAGCCAATTAAAG cttaacagaattatatgataatataactcttgttttgttttttttctcagGGTTTTGTAAGTGGTATTACGGGCCATTGTTACGAAGCCAATTAAAGgtaagtgttgtaggcaccttggctgtcacatagctcacaagtgccattct Alignment from Exonerate_coding2genome cttaacagaattatatgataatataactcttgttttgttttttttctcagggttttgtaagtggtattacgggccattgttacgaagccaattaaaggtaagtgttgtaggcaccttggctgtcacatagctcacaagtgccattct Alignment from GeneWise cttaacagaattatatgataatataactcttgttttgttttttttctcagggttttgtaagtggtattacgggccattgttacgaagccaattaaaggtaagtgttgtaggcaccttggctgtcacatagctcacaagtgccattct #### Vps13a_ID4058_65 --> 2 - 0 Original Alignment gtGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAG-CCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT caccagtgataactgagcctttgtctgataacttgatttttctttggtaggtGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGCGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCCTGCTGGGCTACGAGAAGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCTgtaagcttcccctgggcttaggagcacagcagcaaaatcactttgagcca Alignment from CESAR gtGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAG-CCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT caccagtgataactgagcctttgtctgataacttgatttttctttggtaggtGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGCGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCCTGCTGGGCTACGAGAAGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCTgtaagcttcccctgggcttaggagcacagcagcaaaatcactttgagcca Alignment from Spaln_aa2Genome GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCT-GCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT caccagtgataactgagcctttgtctgataacttgatttttctttggtagGTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGCGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCCtGCTGGGCTACGAGAAGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCTgtaagcttcccctgggcttaggagcacagcagcaaaatcactttgagcca Alignment from Spaln_nt2Genome GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAG-CCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT caccagtgataactgagcctttgtctgataacttgatttttctttggtagGTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGCGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCCTGCTGGGCTACGAGAAGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCTgtaagcttcccctgggcttaggagcacagcagcaaaatcactttgagcca Alignment from Pairagon GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAG-CCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT caccagtgataactgagcctttgtctgataacttgatttttctttggtagGTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGCGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCCTGCTGGGCTACGAGAAGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCTgtaagcttcccctgggcttaggagcacagcagcaaaatcactttgagcca Alignment from Exonerate_protein2genome GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAG-CCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT caccagtgataactgagcctttgtctgataacttgatttttctttggtagGTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGCGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCCTGCTGGGCTACGAGAAGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCTgtaagcttcccctgggcttaggagcacagcagcaaaatcactttgagcca Alignment from Exonerate_coding2genome GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAG-CCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT caccagtgataactgagcctttgtctgataacttgatttttctttggtagGTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGCGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCCTGCTGGGCTACGAGAAGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCTgtaagcttcccctgggcttaggagcacagcagcaaaatcactttgagcca Alignment from GeneWise GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCT-GCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT caccagtgataactgagcctttgtctgataacttgatttttctttggtagGTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGCGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATGAATAAGCAGCCCTGCTGGGCTACGAGAAGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCTgtaagcttcccctgggcttaggagcacagcagcaaaatcactttgagcca #### Vps13a_ID4059_64 --> 0 - 1 Original Alignment GGGGCTATCCAGGGTCCTGAAGAGTTTGTG-GAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTg acagttgctattgcaccaggtctttacttgatgtgcttgcttccctgcagGGGGCTATCCAGGGTCCTGAAGAATTTGTGCGAGGGAATGGCGTTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTggtgagtagcagtgaaacctagcaacactgatcacaccagtgataactgag Alignment from CESAR GGGGCTATCCAGGGTCCTGAAGAGTTTGTG-GAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTg acagttgctattgcaccaggtctttacttgatgtgcttgcttccctgcagGGGGCTATCCAGGGTCCTGAAGAATTTGTGCGAGGGAATGGCGTTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTggtgagtagcagtgaaacctagcaacactgatcacaccagtgataactgag Alignment from Spaln_aa2Genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTG-GAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG acagttgctattgcaccaggtctttacttgatgtgcttgcttccctgcagGGGGCTATCCAGGGTCCTGAAGAATTTGTGcGAGGGAATGGCGTTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTGgtgagtagcagtgaaacctagcaacactgatcacaccagtgataactgag Alignment from Spaln_nt2Genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTG-GAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG acagttgctattgcaccaggtctttacttgatgtgcttgcttccctgcagGGGGCTATCCAGGGTCCTGAAGAATTTGTGCGAGGGAATGGCGTTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTGgtgagtagcagtgaaacctagcaacactgatcacaccagtgataactgag Alignment from Pairagon GGGGCTATCCAGGGTCCTGAAGAGTTTGTG-GAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG acagttgctattgcaccaggtctttacttgatgtgcttgcttccctgcagGGGGCTATCCAGGGTCCTGAAGAATTTGTGCGAGGGAATGGCGTTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTGgtgagtagcagtgaaacctagcaacactgatcacaccagtgataactgag Alignment from Exonerate_protein2genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTG-GAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG acagttgctattgcaccaggtctttacttgatgtgcttgcttccctgcagGGGGCTATCCAGGGTCCTGAAGAATTTGTGCGAGGGAATGGCGTTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTGgtgagtagcagtgaaacctagcaacactgatcacaccagtgataactgag Alignment from Exonerate_coding2genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTG-GAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG acagttgctattgcaccaggtctttacttgatgtgcttgcttccctgcagGGGGCTATCCAGGGTCCTGAAGAATTTGTGCGAGGGAATGGCGTTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTGgtgagtagcagtgaaacctagcaacactgatcacaccagtgataactgag Alignment from GeneWise GGGGCTATCCAGGGTCCTGAAGAGTTT-GTGGAGGGAATGGCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG acagttgctattgcaccaggtctttacttgatgtgcttgcttccctgcagGGGGCTATCCAGGGTCCTGAAGAATTTGTGCGAGGGAATGGCGTTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTGgtgagtagcagtgaaacctagcaacactgatcacaccagtgataactgag #### Vps13a_ID4074_49 --> 0 - 0 Original Alignment GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATT-GATACTGTTGGTAGTCATGGAGCCATTAGATGCAAAGGTCTGAAAATGGAATACCAA taaaaatactttaagcattaattataatgtatatatgttttgtatctcagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAATTTTCAATTCGATACTGTCGGTAGTCATGGAGCCATTAGATGCAAAGGTCTGAAAATGGAATACCAAgtatgtttcttctgtgctaaagaaacttccatttgcattatatctaccag Alignment from CESAR GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATT-GATACTGTTGGTAGTCATGGAGCCATTAGATGCAAAGGTCTGAAAATGGAATACCAA taaaaatactttaagcattaattataatgtatatatgttttgtatctcagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAATTTTCAATTCGATACTGTCGGTAGTCATGGAGCCATTAGATGCAAAGGTCTGAAAATGGAATACCAAgtatgtttcttctgtgctaaagaaacttccatttgcattatatctaccag Alignment from Spaln_aa2Genome GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATT-GATACTGTTGGTAGTCATGGAGCCATTAGATGCAAAGGTCTGAAAATGGAATACCAA taaaaatactttaagcattaattataatgtatatatgttttgtatctcagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAATTTTCAATTcGATACTGTCGGTAGTCATGGAGCCATTAGATGCAAAGGTCTGAAAATGGAATACCAAgtatgtttcttctgtgctaaagaaacttccatttgcattatatctaccag Alignment from Spaln_nt2Genome GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATT-GATACTGTTGGTAGTCATGGAGCCATTAGATGCAAAGGTCTGAAAATGGAATACCAA taaaaatactttaagcattaattataatgtatatatgttttgtatctcagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAATTTTCAATTCGATACTGTCGGTAGTCATGGAGCCATTAGATGCAAAGGTCTGAAAATGGAATACCAAgtatgtttcttctgtgctaaagaaacttccatttgcattatatctaccag Alignment from Pairagon GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATT-GATACTGTTGGTAGTCATGGAGCCATTAGATGCAAAGGTCTGAAAATGGAATACCAA taaaaatactttaagcattaattataatgtatatatgttttgtatctcagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAATTTTCAATTCGATACTGTCGGTAGTCATGGAGCCATTAGATGCAAAGGTCTGAAAATGGAATACCAAgtatgtttcttctgtgctaaagaaacttccatttgcattatatctaccag Alignment from Exonerate_protein2genome GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATT-GATACTGTTGGTAGTCATGGAGCCATTAGATGCAAAGGTCTGAAAATGGAATACCAA taaaaatactttaagcattaattataatgtatatatgttttgtatctcagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAATTTTCAATTCGATACTGTCGGTAGTCATGGAGCCATTAGATGCAAAGGTCTGAAAATGGAATACCAAgtatgtttcttctgtgctaaagaaacttccatttgcattatatctaccag Alignment from Exonerate_coding2genome GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATT-GATACTGTTGGTAGTCATGGAGCCATTAGATGCAAAGGTCTGAAAATGGAATACCAA taaaaatactttaagcattaattataatgtatatatgttttgtatctcagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAATTTTCAATTCGATACTGTCGGTAGTCATGGAGCCATTAGATGCAAAGGTCTGAAAATGGAATACCAAgtatgtttcttctgtgctaaagaaacttccatttgcattatatctaccag Alignment from GeneWise GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCA-ATTGATACTGTTGGTAGTCATGGAGCCATTAGATGCAAAGGTCTGAAAATGGAATACCAA taaaaatactttaagcattaattataatgtatatatgttttgtatctcagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAATTTTCAATTCGATACTGTCGGTAGTCATGGAGCCATTAGATGCAAAGGTCTGAAAATGGAATACCAAgtatgtttcttctgtgctaaagaaacttccatttgcattatatctaccag #### Vps13a_ID4111_12 --> 0 - 2 Original Alignment TATTTCAGCCTCATGGAGCTT-CTCGAGTCAATTGACATGATGACACAAAACCAGCCGTACAGAAAGTTCAAGCCCAGTGTGCCTCTCCACCTCCACGCCAAAGAGtg gctgaacacaagctcagaaagatgtaagcagcaactctaccttctttcagTACTTCAGCCTCATGGAGCTTCCTTGAATCAATTGATATGATGACACAGAACCAGCCATACAGGAAATTTGAGCCCAGTGTGCCCCTCCACCTCCATGCCAAGGAGtggtgagcactttggttgttgggaggtgtgagcaattgtgcattatttttta Alignment from CESAR TATTTCAGCCTCATGGAGCTT-CTCGAGTCAATTGACATGATGACACAAAACCAGCCGTACAGAAAGTTCAAGCCCAGTGTGCCTCTCCACCTCCACGCCAAAGAGtg gctgaacacaagctcagaaagatgtaagcagcaactctaccttctttcagTACTTCAGCCTCATGGAGCTTCCTTGAATCAATTGATATGATGACACAGAACCAGCCATACAGGAAATTTGAGCCCAGTGTGCCCCTCCACCTCCATGCCAAGGAGtggtgagcactttggttgttgggaggtgtgagcaattgtgcattatttttta Alignment from Spaln_aa2Genome TATTTCAGCCTCATGGAGCTT-CTCGAGTCAATTGACATGATGACACAAAACCAGCCGTACAGAAAGTTCAAGCCCAGTGTGCCTCTCCACCTCCACGCCAAAGAGTG gctgaacacaagctcagaaagatgtaagcagcaactctaccttctttcagTACTTCAGCCTCATGGAGCTTcCTTGAATCAATTGATATGATGACACAGAACCAGCCATACAGGAAATTTGAGCCCAGTGTGCCCCTCCACCTCCATGCCAAGGAGTGgtgagcactttggttgttgggaggtgtgagcaattgtgcattatttttta Alignment from Spaln_nt2Genome TATTTCAGCCTCATGGAGCTT-CTCGAGTCAATTGACATGATGACACAAAACCAGCCGTACAGAAAGTTCAAGCCCAGTGTGCCTCTCCACCTCCACGCCAAAGAGTG gctgaacacaagctcagaaagatgtaagcagcaactctaccttctttcagTACTTCAGCCTCATGGAGCTTCCTTGAATCAATTGATATGATGACACAGAACCAGCCATACAGGAAATTTGAGCCCAGTGTGCCCCTCCACCTCCATGCCAAGGAGTGgtgagcactttggttgttgggaggtgtgagcaattgtgcattatttttta Alignment from Pairagon TATTTCAGCCTCATGGAGCTT-CTCGAGTCAATTGACATGATGACACAAAACCAGCCGTACAGAAAGTTCAAGCCCAGTGTGCCTCTCCACCTCCACGCCAAAGAGTG gctgaacacaagctcagaaagatgtaagcagcaactctaccttctttcagTACTTCAGCCTCATGGAGCTTCCTTGAATCAATTGATATGATGACACAGAACCAGCCATACAGGAAATTTGAGCCCAGTGTGCCCCTCCACCTCCATGCCAAGGAGTGgtgagcactttggttgttgggaggtgtgagcaattgtgcattatttttta Alignment from Exonerate_protein2genome TATTTCAGCCTCATGGAGCTT-CTCGAGTCAATTGACATGATGACACAAAACCAGCCGTACAGAAAGTTCAAGCCCAGTGTGCCTCTCCACCTCCACGCCAAAGAGTG gctgaacacaagctcagaaagatgtaagcagcaactctaccttctttcagTACTTCAGCCTCATGGAGCTTCCTTGAATCAATTGATATGATGACACAGAACCAGCCATACAGGAAATTTGAGCCCAGTGTGCCCCTCCACCTCCATGCCAAGGAGTGgtgagcactttggttgttgggaggtgtgagcaattgtgcattatttttta Alignment from Exonerate_coding2genome TATTTCAGCCTCATGGAGCTT-CTCGAGTCAATTGACATGATGACACAAAACCAGCCGTACAGAAAGTTCAAGCCCAGTGTGCCTCTCCACCTCCACGCCAAAGAGTG gctgaacacaagctcagaaagatgtaagcagcaactctaccttctttcagTACTTCAGCCTCATGGAGCTTCCTTGAATCAATTGATATGATGACACAGAACCAGCCATACAGGAAATTTGAGCCCAGTGTGCCCCTCCACCTCCATGCCAAGGAGTGgtgagcactttggttgttgggaggtgtgagcaattgtgcattatttttta Alignment from GeneWise -CTTCTCGAGTCAATTGACATGATGACACAAAACCAGCCGTACAGAAAGTTCAAGCCCAGTGTGCCTCTCCACCTCCACGCCAAAGAGTG gctgaacacaagctcagaaagatgtaagcagcaactctaccttctttcagtacttcagcctcatggagCTTCCTTGAATCAATTGATATGATGACACAGAACCAGCCATACAGGAAATTTGAGCCCAGTGTGCCCCTCCACCTCCATGCCAAGGAGTGgtgagcactttggttgttgggaggtgtgagcaattgtgcattatttttta #### Vps13a_ID4114_9 --> 0 - 0 Original Alignment CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTG-AATGATTACGATGAATCGCTG agatgcatggcaaaatctttaaaactaaactcattctcttttaatgccagCTAATCCGGTTAGACAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTCTATCTGCAATGATTATGATGAATCACTGgtaataacatatttacatatctttggttttatattgtataatacttaact Alignment from CESAR CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTG-AATGATTACGATGAATCGCTG agatgcatggcaaaatctttaaaactaaactcattctcttttaatgccagCTAATCCGGTTAGACAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTCTATCTGCAATGATTATGATGAATCACTGgtaataacatatttacatatctttggttttatattgtataatacttaact Alignment from Spaln_aa2Genome CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTG-AATGATTACGATGAATCGCTG agatgcatggcaaaatctttaaaactaaactcattctcttttaatgccagCTAATCCGGTTAGACAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTCTATCTGcAATGATTATGATGAATCACTGgtaataacatatttacatatctttggttttatattgtataatacttaact Alignment from Spaln_nt2Genome CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTG-AATGATTACGATGAATCGCTG agatgcatggcaaaatctttaaaactaaactcattctcttttaatgccagCTAATCCGGTTAGACAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTCTATCTGCAATGATTATGATGAATCACTGgtaataacatatttacatatctttggttttatattgtataatacttaact Alignment from Pairagon CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTG-AATGATTACGATGAATCGCTG agatgcatggcaaaatctttaaaactaaactcattctcttttaatgccagCTAATCCGGTTAGACAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTCTATCTGCAATGATTATGATGAATCACTGgtaataacatatttacatatctttggttttatattgtataatacttaact Alignment from Exonerate_protein2genome CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTG-AATGATTACGATGAATCGCTG agatgcatggcaaaatctttaaaactaaactcattctcttttaatgccagCTAATCCGGTTAGACAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTCTATCTGCAATGATTATGATGAATCACTGgtaataacatatttacatatctttggttttatattgtataatacttaact Alignment from Exonerate_coding2genome CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTATCTG-AATGATTACGATGAATCGCTG agatgcatggcaaaatctttaaaactaaactcattctcttttaatgccagCTAATCCGGTTAGACAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTCTATCTGCAATGATTATGATGAATCACTGgtaataacatatttacatatctttggttttatattgtataatacttaact Alignment from GeneWise CTAATCCGATTAGATAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTTTAT-CTGAATGATTACGATGAATCGCTG agatgcatggcaaaatctttaaaactaaactcattctcttttaatgccagCTAATCCGGTTAGACAATCTCTTTGCTTACTGGAATGTGAACTCTGAGATGTTCTATCTGCAATGATTATGATGAATCACTGgtaataacatatttacatatctttggttttatattgtataatacttaact #### Vps13a_ID4119_4 --> 2 - 1 Original Alignment gtAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAA-ATTTTTTTACTCATAGTGCCTTCTTCTa ttccctttataaaagctcagaaaatgttctctctttctctctgttttaaggtAGCCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAACATTTTTTTACTCATAGTGCCTTCTTCTagtaagtcacttaaagtttataatttagattatttctagatttaaaaattg Alignment from CESAR gtAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAA-ATTTTTTTACTCATAGTGCCTTCTTCTa ttccctttataaaagctcagaaaatgttctctctttctctctgttttaaggtAGCCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAACATTTTTTTACTCATAGTGCCTTCTTCTagtaagtcacttaaagtttataatttagattatttctagatttaaaaattg Alignment from Spaln_aa2Genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAA-ATTTTTTTACTCATAGTGCCTTCTTCTA ttccctttataaaagctcagaaaatgttctctctttctctctgttttaagGTAGCCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAcATTTTTTTACTCATAGTGCCTTCTTCTAgtaagtcacttaaagtttataatttagattatttctagatttaaaaattg Alignment from Spaln_nt2Genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAA-ATTTTTTTACTCATAGTGCCTTCTTCTA ttccctttataaaagctcagaaaatgttctctctttctctctgttttaagGTAGCCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAACATTTTTTTACTCATAGTGCCTTCTTCTAgtaagtcacttaaagtttataatttagattatttctagatttaaaaattg Alignment from Pairagon GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAA-ATTTTTTTACTCATAGTGCCTTCTTCTA ttccctttataaaagctcagaaaatgttctctctttctctctgttttaagGTAGCCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAACATTTTTTTACTCATAGTGCCTTCTTCTAgtaagtcacttaaagtttataatttagattatttctagatttaaaaattg Alignment from Exonerate_protein2genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAA-ATTTTTTTACTCATAGTGCCTTCTTCTA ttccctttataaaagctcagaaaatgttctctctttctctctgttttaagGTAGCCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAACATTTTTTTACTCATAGTGCCTTCTTCTAgtaagtcacttaaagtttataatttagattatttctagatttaaaaattg Alignment from Exonerate_coding2genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAA-ATTTTTTTACTCATAGTGCCTTCTTCTA ttccctttataaaagctcagaaaatgttctctctttctctctgttttaagGTAGCCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAACATTTTTTTACTCATAGTGCCTTCTTCTAgtaagtcacttaaagtttataatttagattatttctagatttaaaaattg Alignment from GeneWise TCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAA-ATTTTTTTACTCATAGTGCCTTCTTCTA ttccctttataaaagctcagaaaatgttctctctttctctctgttttaaggtagCCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAACATTTTTTTACTCATAGTGCCTTCTTCTAgtaagtcacttaaagtttataatttagattatttctagatttaaaaattg #### Vwce_ID2948_3 --> 2 - 1 Original Alignment ccCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTC-TGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAg agtctgtgcattgcgagggcttggtccgatgtggtttttgttatttctagccCTCTGCTCCTTTGGCTGTGGAAGTGGCATCTGCATCACTCCTAATGTCCTGTTCATGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAggtaagtgtgatgaaagagggcagaccgtgatcaccaaaataatatgaaga Alignment from CESAR ccCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTC-TGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAg agtctgtgcattgcgagggcttggtccgatgtggtttttgttatttctagccCTCTGCTCCTTTGGCTGTGGAAGTGGCATCTGCATCACTCCTAATGTCCTGTTCATGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAggtaagtgtgatgaaagagggcagaccgtgatcaccaaaataatatgaaga Alignment from Spaln_aa2Genome CCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTC-TGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG agtctgtgcattgcgagggcttggtccgatgtggtttttgttatttctagCCCTCTGCTCCTTTGGCTGTGGAAGTGGCATCTGCATCACTCCTAATGTCcTGTTCATGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAGgtaagtgtgatgaaagagggcagaccgtgatcaccaaaataatatgaaga Alignment from Spaln_nt2Genome CCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGT-CTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG agtctgtgcattgcgagggcttggtccgatgtggtttttgttatttctagCCCTCTGCTCCTTTGGCTGTGGAAGTGGCATCTGCATCACTCCTAATGTCCTGTTCATGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAGgtaagtgtgatgaaagagggcagaccgtgatcaccaaaataatatgaaga Alignment from Pairagon CCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGT-CTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG agtctgtgcattgcgagggcttggtccgatgtggtttttgttatttctagCCCTCTGCTCCTTTGGCTGTGGAAGTGGCATCTGCATCACTCCTAATGTCCTGTTCATGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAGgtaagtgtgatgaaagagggcagaccgtgatcaccaaaataatatgaaga Alignment from Exonerate_protein2genome CCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTC-TGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG agtctgtgcattgcgagggcttggtccgatgtggtttttgttatttctagCCCTCTGCTCCTTTGGCTGTGGAAGTGGCATCTGCATCACTCCTAATGTCCTGTTCATGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAGgtaagtgtgatgaaagagggcagaccgtgatcaccaaaataatatgaaga Alignment from Exonerate_coding2genome CCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTC-TGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG agtctgtgcattgcgagggcttggtccgatgtggtttttgttatttctagCCCTCTGCTCCTTTGGCTGTGGAAGTGGCATCTGCATCACTCCTAATGTCCTGTTCATGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAGgtaagtgtgatgaaagagggcagaccgtgatcaccaaaataatatgaaga Alignment from GeneWise CCCTCTGCTCCTTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAAT-GTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG agtctgtgcattgcgagggcttggtccgatgtggtttttgttatttctagCCCTCTGCTCCTTTGGCTGTGGAAGTGGCATCTGCATCACTCCTAATGTCCTGTTCATGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAGgtaagtgtgatgaaagagggcagaccgtgatcaccaaaataatatgaaga #### Vwce_ID2964_18 --> 2 - 0 Original Alignment acTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTG-TTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG aattcacccagctgaatatgggtcccatcctcgcctgcacttcttcccagacTGTAACTTTGAAGGGAGAAAGGTAGTGAATGGTCAGGTTCTTCACCCTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtgagctggccagagggcctggggccacctgttgcataagggaccctcat Alignment from CESAR acTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTG-TTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG aattcacccagctgaatatgggtcccatcctcgcctgcacttcttcccagacTGTAACTTTGAAGGGAGAAAGGTAGTGAATGGTCAGGTTCTTCACCCTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtgagctggccagagggcctggggccacctgttgcataagggaccctcat Alignment from Spaln_aa2Genome ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTG-TTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG aattcacccagctgaatatgggtcccatcctcgcctgcacttcttcccagACTGTAACTTTGAAGGGAGAAAGGTAGTGAATGGTCAGGTTcTTCACCCTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtgagctggccagagggcctggggccacctgttgcataagggaccctcat Alignment from Spaln_nt2Genome ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTG-TTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG aattcacccagctgaatatgggtcccatcctcgcctgcacttcttcccagACTGTAACTTTGAAGGGAGAAAGGTAGTGAATGGTCAGGTTCTTCACCCTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtgagctggccagagggcctggggccacctgttgcataagggaccctcat Alignment from Pairagon ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGG-TGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG aattcacccagctgaatatgggtcccatcctcgcctgcacttcttcccagACTGTAACTTTGAAGGGAGAAAGGTAGTGAATGGTCAGGTTCTTCACCCTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtgagctggccagagggcctggggccacctgttgcataagggaccctcat Alignment from Exonerate_protein2genome ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTG-TTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG aattcacccagctgaatatgggtcccatcctcgcctgcacttcttcccagACTGTAACTTTGAAGGGAGAAAGGTAGTGAATGGTCAGGTTCTTCACCCTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtgagctggccagagggcctggggccacctgttgcataagggaccctcat Alignment from Exonerate_coding2genome ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTG-TTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG aattcacccagctgaatatgggtcccatcctcgcctgcacttcttcccagACTGTAACTTTGAAGGGAGAAAGGTAGTGAATGGTCAGGTTCTTCACCCTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtgagctggccagagggcctggggccacctgttgcataagggaccctcat Alignment from GeneWise ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAG-GTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG aattcacccagctgaatatgggtcccatcctcgcctgcacttcttcccagACTGTAACTTTGAAGGGAGAAAGGTAGTGAATGGTCAGGTTCTTCACCCTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtgagctggccagagggcctggggccacctgttgcataagggaccctcat #### Wdr74_ID2315_5 --> 0 - 0 Original Alignment CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAA-AATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttagtaaaggaaagacctaccgctttcttccctttagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCAGGATCCCACACATACACATGTCGTTGCCACATGTGGGAAAGAACAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTTTTCAGGGCCAAAAATgtgggtgagggataaaggattggggagataccatttttaaaggttggaga Alignment from CESAR CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAA-AATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttagtaaaggaaagacctaccgctttcttccctttagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCAGGATCCCACACATACACATGTCGTTGCCACATGTGGGAAAGAACAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTTTTCAGGGCCAAAAATgtgggtgagggataaaggattggggagataccatttttaaaggttggaga Alignment from Spaln_aa2Genome CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAA-AATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttagtaaaggaaagacctaccgctttcttccctttagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCAGGATCCCACACATACACATGTCGTTGCCACATGTGGGAAAGAAcAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTTTTCAGGGCCAAAAATgtgggtgagggataaaggattggggagataccatttttaaaggttggaga Alignment from Spaln_nt2Genome CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGG-AAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttagtaaaggaaagacctaccgctttcttccctttagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCAGGATCCCACACATACACATGTCGTTGCCACATGTGGGAAAGAACAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTTTTCAGGGCCAAAAATgtgggtgagggataaaggattggggagataccatttttaaaggttggaga Alignment from Pairagon CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAA-AATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttagtaaaggaaagacctaccgctttcttccctttagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCAGGATCCCACACATACACATGTCGTTGCCACATGTGGGAAAGAACAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTTTTCAGGGCCAAAAATgtgggtgagggataaaggattggggagataccatttttaaaggttggaga Alignment from Exonerate_protein2genome CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAA-AATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttagtaaaggaaagacctaccgctttcttccctttagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCAGGATCCCACACATACACATGTCGTTGCCACATGTGGGAAAGAACAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTTTTCAGGGCCAAAAATgtgggtgagggataaaggattggggagataccatttttaaaggttggaga Alignment from Exonerate_coding2genome CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAA-AATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttagtaaaggaaagacctaccgctttcttccctttagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCAGGATCCCACACATACACATGTCGTTGCCACATGTGGGAAAGAACAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTTTTCAGGGCCAAAAATgtgggtgagggataaaggattggggagataccatttttaaaggttggaga Alignment from GeneWise CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAA-GAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTATTCAGGGCCAAAAAT tctaatggataagttagtaaaggaaagacctaccgctttcttccctttagCTCTTAGAACTGAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCAGGATCCCACACATACACATGTCGTTGCCACATGTGGGAAAGAACAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCTGTTTTCAGGGCCAAAAATgtgggtgagggataaaggattggggagataccatttttaaaggttggaga #### Wdr74_ID2319_9 --> 2 - 0 Original Alignment ggCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGG-ATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gcattagagtggctagttagccaacaccatccatttttcattcattgtaggtAGACTACTGGGCTGTCTGAAGGGTCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGGACAGAGTCTTGAGGCATATACAGGATCCGCAATCCATGTGGGCTAGAGCATAAGgtgagtgcccaaacctttgcgctggccgcactaacttacattttctggaa Alignment from CESAR ggCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGG-ATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gcattagagtggctagttagccaacaccatccatttttcattcattgtaggtAGACTACTGGGCTGTCTGAAGGGTCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGGACAGAGTCTTGAGGCATATACAGGATCCGCAATCCATGTGGGCTAGAGCATAAGgtgagtgcccaaacctttgcgctggccgcactaacttacattttctggaa Alignment from Spaln_aa2Genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGG-ATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gcattagagtggctagttagccaacaccatccatttttcattcattgtagGTAGACTACTGGGCTGTCTGAAGGGTCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGGACAGAGTCTTGAGGcATATACAGGATCCGCAATCCATGTGGGCTAGAGCATAAGgtgagtgcccaaacctttgcgctggccgcactaacttacattttctggaa Alignment from Spaln_nt2Genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGG-ATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gcattagagtggctagttagccaacaccatccatttttcattcattgtagGTAGACTACTGGGCTGTCTGAAGGGTCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGGACAGAGTCTTGAGGCATATACAGGATCCGCAATCCATGTGGGCTAGAGCATAAGgtgagtgcccaaacctttgcgctggccgcactaacttacattttctggaa Alignment from Pairagon GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGG-ATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gcattagagtggctagttagccaacaccatccatttttcattcattgtagGTAGACTACTGGGCTGTCTGAAGGGTCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGGACAGAGTCTTGAGGCATATACAGGATCCGCAATCCATGTGGGCTAGAGCATAAGgtgagtgcccaaacctttgcgctggccgcactaacttacattttctggaa Alignment from Exonerate_protein2genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGG-ATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gcattagagtggctagttagccaacaccatccatttttcattcattgtagGTAGACTACTGGGCTGTCTGAAGGGTCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGGACAGAGTCTTGAGGCATATACAGGATCCGCAATCCATGTGGGCTAGAGCATAAGgtgagtgcccaaacctttgcgctggccgcactaacttacattttctggaa Alignment from Exonerate_coding2genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGG-ATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gcattagagtggctagttagccaacaccatccatttttcattcattgtagGTAGACTACTGGGCTGTCTGAAGGGTCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGGACAGAGTCTTGAGGCATATACAGGATCCGCAATCCATGTGGGCTAGAGCATAAGgtgagtgcccaaacctttgcgctggccgcactaacttacattttctggaa Alignment from GeneWise GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGG-ATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gcattagagtggctagttagccaacaccatccatttttcattcattgtagGTAGACTACTGGGCTGTCTGAAGGGTCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGGACAGAGTCTTGAGGCATATACAGGATCCGCAATCCATGTGGGCTAGAGCATAAGgtgagtgcccaaacctttgcgctggccgcactaacttacattttctggaa #### Wdr74_ID2320_10 --> 0 - 0 Original Alignment GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTG-TCAGGCCGGGATAACTGGGAG gtatctggctcagggactatatggacttaatataattctttttcaaacagGTTTATCTCAAGTGTCAGCTGAACTGCCTTCTCCTGCTCAGGCCGGGATAACTGGGAGgtaagggaatagttaggtgtgagagatttcgagccaaagccgggatgaat Alignment from CESAR GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTG-TCAGGCCGGGATAACTGGGAG gtatctggctcagggactatatggacttaatataattctttttcaaacagGTTTATCTCAAGTGTCAGCTGAACTGCCTTCTCCTGCTCAGGCCGGGATAACTGGGAGgtaagggaatagttaggtgtgagagatttcgagccaaagccgggatgaat Alignment from Spaln_aa2Genome GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTG-TCAGGCCGGGATAACTGGGAG gtatctggctcagggactatatggacttaatataattctttttcaaacagGTTTATCTCAAGTGTCAGCTGAACTGCCTTCTCCTGcTCAGGCCGGGATAACTGGGAGgtaagggaatagttaggtgtgagagatttcgagccaaagccgggatgaat Alignment from Spaln_nt2Genome GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTG-TCAGGCCGGGATAACTGGGAG gtatctggctcagggactatatggacttaatataattctttttcaaacagGTTTATCTCAAGTGTCAGCTGAACTGCCTTCTCCTGCTCAGGCCGGGATAACTGGGAGgtaagggaatagttaggtgtgagagatttcgagccaaagccgggatgaat Alignment from Pairagon GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTG-TCAGGCCGGGATAACTGGGAG gtatctggctcagggactatatggacttaatataattctttttcaaacagGTTTATCTCAAGTGTCAGCTGAACTGCCTTCTCCTGCTCAGGCCGGGATAACTGGGAGgtaagggaatagttaggtgtgagagatttcgagccaaagccgggatgaat Alignment from Exonerate_protein2genome GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTG-TCAGGCCGGGATAACTGGGAG gtatctggctcagggactatatggacttaatataattctttttcaaacagGTTTATCTCAAGTGTCAGCTGAACTGCCTTCTCCTGCTCAGGCCGGGATAACTGGGAGgtaagggaatagttaggtgtgagagatttcgagccaaagccgggatgaat Alignment from Exonerate_coding2genome GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTG-TCAGGCCGGGATAACTGGGAG gtatctggctcagggactatatggacttaatataattctttttcaaacagGTTTATCTCAAGTGTCAGCTGAACTGCCTTCTCCTGCTCAGGCCGGGATAACTGGGAGgtaagggaatagttaggtgtgagagatttcgagccaaagccgggatgaat Alignment from GeneWise GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTG-TCAGGCCGGGATAACTGGGAG gtatctggctcagggactatatggacttaatataattctttttcaaacagGTTTATCTCAAGTGTCAGCTGAACTGCCTTCTCCTGCTCAGGCCGGGATAACTGGGAGgtaagggaatagttaggtgtgagagatttcgagccaaagccgggatgaat #### Wnt8b_ID9022_5 --> 2 - 0 Original Alignment ggGGCCAAGGTTGGCTCTGGGGA-GGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gtgtcagctcactttggactcagggacttatagcgtctcttttctttcagggGGCCAAGGTTGGCTCTGGGGACGGATGCAGTGACAATGTTGGCTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATGTCCTCGAGACAGGGCAAGATGCCCGGGCAGCCATGAATTTGCACAACAATGAGGCGGGTCGCAAGgtaggtcctgcagctgtcagaactagggacccagcttcatccagtaccgg Alignment from CESAR ggGGCCAAGGTTGGCTCTGGGGA-GGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gtgtcagctcactttggactcagggacttatagcgtctcttttctttcagggGGCCAAGGTTGGCTCTGGGGACGGATGCAGTGACAATGTTGGCTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATGTCCTCGAGACAGGGCAAGATGCCCGGGCAGCCATGAATTTGCACAACAATGAGGCGGGTCGCAAGgtaggtcctgcagctgtcagaactagggacccagcttcatccagtaccgg Alignment from Spaln_aa2Genome GGGGCCAAGGTTGGCTCTGGGGA-GGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gtgtcagctcactttggactcagggacttatagcgtctcttttctttcagGGGGCCAAGGTTGGCTCTGGGGAcGGATGCAGTGACAATGTTGGCTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATGTCCTCGAGACAGGGCAAGATGCCCGGGCAGCCATGAATTTGCACAACAATGAGGCGGGTCGCAAGgtaggtcctgcagctgtcagaactagggacccagcttcatccagtaccgg Alignment from Spaln_nt2Genome GGGGCCAAGGTTGGCTCTGGGGA-GGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gtgtcagctcactttggactcagggacttatagcgtctcttttctttcagGGGGCCAAGGTTGGCTCTGGGGACGGATGCAGTGACAATGTTGGCTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATGTCCTCGAGACAGGGCAAGATGCCCGGGCAGCCATGAATTTGCACAACAATGAGGCGGGTCGCAAGgtaggtcctgcagctgtcagaactagggacccagcttcatccagtaccgg Alignment from Pairagon GGGGCCAAGGTTGGCTCTGGGGA-GGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gtgtcagctcactttggactcagggacttatagcgtctcttttctttcagGGGGCCAAGGTTGGCTCTGGGGACGGATGCAGTGACAATGTTGGCTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATGTCCTCGAGACAGGGCAAGATGCCCGGGCAGCCATGAATTTGCACAACAATGAGGCGGGTCGCAAGgtaggtcctgcagctgtcagaactagggacccagcttcatccagtaccgg Alignment from Exonerate_protein2genome GGGGCCAAGGTTGGCTCTGGGGA-GGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gtgtcagctcactttggactcagggacttatagcgtctcttttctttcagGGGGCCAAGGTTGGCTCTGGGGACGGATGCAGTGACAATGTTGGCTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATGTCCTCGAGACAGGGCAAGATGCCCGGGCAGCCATGAATTTGCACAACAATGAGGCGGGTCGCAAGgtaggtcctgcagctgtcagaactagggacccagcttcatccagtaccgg Alignment from Exonerate_coding2genome GGGGCCAAGGTTGGCTCTGGGGA-GGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gtgtcagctcactttggactcagggacttatagcgtctcttttctttcagGGGGCCAAGGTTGGCTCTGGGGACGGATGCAGTGACAATGTTGGCTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATGTCCTCGAGACAGGGCAAGATGCCCGGGCAGCCATGAATTTGCACAACAATGAGGCGGGTCGCAAGgtaggtcctgcagctgtcagaactagggacccagcttcatccagtaccgg Alignment from GeneWise GGGGCCAAGGTTGGCTCTGGGGA-GGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gtgtcagctcactttggactcagggacttatagcgtctcttttctttcagGGGGCCAAGGTTGGCTCTGGGGACGGATGCAGTGACAATGTTGGCTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATGTCCTCGAGACAGGGCAAGATGCCCGGGCAGCCATGAATTTGCACAACAATGAGGCGGGTCGCAAGgtaggtcctgcagctgtcagaactagggacccagcttcatccagtaccgg #### Yif1a_ID831_3 --> 0 - 0 Original Alignment CTGCACCGTTTTGTG-TCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG atcttacaggagggactactatccataaaatgccatctcttcccctgtagTTGCACCGTTTTGTGCTCTGTGAACAAACTCAAGTATTTCTTTGCTGTGGACACAGCCTACGTTGCTAAGAAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtaagattgccattcagagtgctggccccctacttgtgaataacctgact Alignment from CESAR CTGCACCGTTTTGTG-TCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG atcttacaggagggactactatccataaaatgccatctcttcccctgtagTTGCACCGTTTTGTGCTCTGTGAACAAACTCAAGTATTTCTTTGCTGTGGACACAGCCTACGTTGCTAAGAAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtaagattgccattcagagtgctggccccctacttgtgaataacctgact Alignment from Spaln_aa2Genome CTGCACCGTTTTGTG-TCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG atcttacaggagggactactatccataaaatgccatctcttcccctgtagTTGCACCGTTTTGTGcTCTGTGAACAAACTCAAGTATTTCTTTGCTGTGGACACAGCCTACGTTGCTAAGAAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtaagattgccattcagagtgctggccccctacttgtgaataacctgact Alignment from Spaln_nt2Genome CTGCACCGTTTTGTG-TCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG atcttacaggagggactactatccataaaatgccatctcttcccctgtagTTGCACCGTTTTGTGCTCTGTGAACAAACTCAAGTATTTCTTTGCTGTGGACACAGCCTACGTTGCTAAGAAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtaagattgccattcagagtgctggccccctacttgtgaataacctgact Alignment from Pairagon CTGCACCGTTTTGTG-TCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG atcttacaggagggactactatccataaaatgccatctcttcccctgtagTTGCACCGTTTTGTGCTCTGTGAACAAACTCAAGTATTTCTTTGCTGTGGACACAGCCTACGTTGCTAAGAAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtaagattgccattcagagtgctggccccctacttgtgaataacctgact Alignment from Exonerate_protein2genome CTGCACCGTTTTGTG-TCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG atcttacaggagggactactatccataaaatgccatctcttcccctgtagTTGCACCGTTTTGTGCTCTGTGAACAAACTCAAGTATTTCTTTGCTGTGGACACAGCCTACGTTGCTAAGAAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtaagattgccattcagagtgctggccccctacttgtgaataacctgact Alignment from Exonerate_coding2genome CTGCACCGTTTTGTG-TCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG atcttacaggagggactactatccataaaatgccatctcttcccctgtagTTGCACCGTTTTGTGCTCTGTGAACAAACTCAAGTATTTCTTTGCTGTGGACACAGCCTACGTTGCTAAGAAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtaagattgccattcagagtgctggccccctacttgtgaataacctgact Alignment from GeneWise CTGCACCGTTTTGTG-TCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTCTTCCCATACACACATCAG atcttacaggagggactactatccataaaatgccatctcttcccctgtagTTGCACCGTTTTGTGCTCTGTGAACAAACTCAAGTATTTCTTTGCTGTGGACACAGCCTACGTTGCTAAGAAGCTCGGGCTATTAGTCTTCCCATACACACATCAAgtaagattgccattcagagtgctggccccctacttgtgaataacctgact #### Yif1a_ID834_6 --> 1 - 2 Original Alignment gTTCTCCCCAGAGGTGTTGGGC-CTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGgg gtctgagctgacccaccttgggcacctatgctgtgcttttcttttcacaggTTTTCCCCAGAGGTGTTGGGCCCTGTGTGCAAGCACAGCACTGGTATGGGTGTTCATGGAGGTGTTGGCTCTGCTTTTGGGGCTCTACCTGGCCACTGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCAGTTACAAATATGTGgggtgagagtccaaaggccaagaggagtctgggaggtcctaggctacgggtg Alignment from CESAR gTTCTCCCCAGAGGTGTTGGGC-CTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGgg gtctgagctgacccaccttgggcacctatgctgtgcttttcttttcacaggTTTTCCCCAGAGGTGTTGGGCCCTGTGTGCAAGCACAGCACTGGTATGGGTGTTCATGGAGGTGTTGGCTCTGCTTTTGGGGCTCTACCTGGCCACTGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCAGTTACAAATATGTGgggtgagagtccaaaggccaagaggagtctgggaggtcctaggctacgggtg Alignment from Spaln_aa2Genome GTTCTCCCCAGAGGTGTTGGGC-CTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctgagctgacccaccttgggcacctatgctgtgcttttcttttcacagGTTTTCCCCAGAGGTGTTGGGCcCTGTGTGCAAGCACAGCACTGGTATGGGTGTTCATGGAGGTGTTGGCTCTGCTTTTGGGGCTCTACCTGGCCACTGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCAGTTACAAATATGTGGGgtgagagtccaaaggccaagaggagtctgggaggtcctaggctacgggtg Alignment from Spaln_nt2Genome GTTCTCCCCAGAGGTGTTGGGCC-TGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctgagctgacccaccttgggcacctatgctgtgcttttcttttcacagGTTTTCCCCAGAGGTGTTGGGCCCTGTGTGCAAGCACAGCACTGGTATGGGTGTTCATGGAGGTGTTGGCTCTGCTTTTGGGGCTCTACCTGGCCACTGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCAGTTACAAATATGTGGGgtgagagtccaaaggccaagaggagtctgggaggtcctaggctacgggtg Alignment from Pairagon GTTCTCCCCAGAGGTGTTGGG-CCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctgagctgacccaccttgggcacctatgctgtgcttttcttttcacagGTTTTCCCCAGAGGTGTTGGGCCCTGTGTGCAAGCACAGCACTGGTATGGGTGTTCATGGAGGTGTTGGCTCTGCTTTTGGGGCTCTACCTGGCCACTGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCAGTTACAAATATGTGGGgtgagagtccaaaggccaagaggagtctgggaggtcctaggctacgggtg Alignment from Exonerate_protein2genome GTTCTCCCCAGAGGTGTTGGGC-CTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctgagctgacccaccttgggcacctatgctgtgcttttcttttcacagGTTTTCCCCAGAGGTGTTGGGCCCTGTGTGCAAGCACAGCACTGGTATGGGTGTTCATGGAGGTGTTGGCTCTGCTTTTGGGGCTCTACCTGGCCACTGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCAGTTACAAATATGTGGGgtgagagtccaaaggccaagaggagtctgggaggtcctaggctacgggtg Alignment from Exonerate_coding2genome GTTCTCCCCAGAGGTGTTGGGC-CTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctgagctgacccaccttgggcacctatgctgtgcttttcttttcacagGTTTTCCCCAGAGGTGTTGGGCCCTGTGTGCAAGCACAGCACTGGTATGGGTGTTCATGGAGGTGTTGGCTCTGCTTTTGGGGCTCTACCTGGCCACTGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCAGTTACAAATATGTGGGgtgagagtccaaaggccaagaggagtctgggaggtcctaggctacgggtg Alignment from GeneWise GTTCTCCCCAGAGGTGTTGGGC-CTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctgagctgacccaccttgggcacctatgctgtgcttttcttttcacagGTTTTCCCCAGAGGTGTTGGGCCCTGTGTGCAAGCACAGCACTGGTATGGGTGTTCATGGAGGTGTTGGCTCTGCTTTTGGGGCTCTACCTGGCCACTGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCAGTTACAAATATGTGGGgtgagagtccaaaggccaagaggagtctgggaggtcctaggctacgggtg #### Yif1a_ID835_7 --> 1 - 0 Original Alignment gATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGAT-GGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT cctgttcactgcattcctaattcattcaattatttttgttacatatacaggATGATCTTGAGTGTGCTCACAGGACTGCTCTTCGGCAGTGACCAGCTACTATGTGGCCCTGGCCTGGACATCATCTGCACTTATGTACTTCATTgtatcagtggggcggcccctgcccctctcctctgagcaaaccctgctctt Alignment from CESAR gATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGAT-GGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT cctgttcactgcattcctaattcattcaattatttttgttacatatacaggATGATCTTGAGTGTGCTCACAGGACTGCTCTTCGGCAGTGACCAGCTACTATGTGGCCCTGGCCTGGACATCATCTGCACTTATGTACTTCATTgtatcagtggggcggcccctgcccctctcctctgagcaatgtgccatttc Alignment from Spaln_aa2Genome GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGAT-GGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT cctgttcactgcattcctaattcattcaattatttttgttacatatacagGATGATCTTGAGTGTGCTCACAGGACTGCTCTTCGGCAGTGACcAGCTACTATGTGGCCCTGGCCTGGACATCATCTGCACTTATGTACTTCATTgtatcagtggggcggcccctgcccctctcctctgagcaaaccctgctctt Alignment from Spaln_nt2Genome GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATG-GCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT cctgttcactgcattcctaattcattcaattatttttgttacatatacagGATGATCTTGAGTGTGCTCACAGGACTGCTCTTCGGCAGTGACCAGCTACTATGTGGCCCTGGCCTGGACATCATCTGCACTTATGTACTTCATTgtatcagtggggcggcccctgcccctctcctctgagcaaaccctgctctt Alignment from Pairagon GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGA-TGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT cctgttcactgcattcctaattcattcaattatttttgttacatatacagGATGATCTTGAGTGTGCTCACAGGACTGCTCTTCGGCAGTGACCAGCTACTATGTGGCCCTGGCCTGGACATCATCTGCACTTATGTACTTCATTgtatcagtggggcggcccctgcccctctcctctgagcaaaccctgctctt Alignment from Exonerate_protein2genome GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGAT-GGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT cctgttcactgcattcctaattcattcaattatttttgttacatatacagGATGATCTTGAGTGTGCTCACAGGACTGCTCTTCGGCAGTGACCAGCTACTATGTGGCCCTGGCCTGGACATCATCTGCACTTATGTACTTCATTgtatcagtggggcggcccctgcccctctcctctgagcaaaccctgctctt Alignment from Exonerate_coding2genome GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGAT-GGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT cctgttcactgcattcctaattcattcaattatttttgttacatatacagGATGATCTTGAGTGTGCTCACAGGACTGCTCTTCGGCAGTGACCAGCTACTATGTGGCCCTGGCCTGGACATCATCTGCACTTATGTACTTCATTgtatcagtggggcggcccctgcccctctcctctgagcaaaccctgctctt Alignment from GeneWise GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGAT-GGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT cctgttcactgcattcctaattcattcaattatttttgttacatatacagGATGATCTTGAGTGTGCTCACAGGACTGCTCTTCGGCAGTGACCAGCTACTATGTGGCCCTGGCCTGGACATCATCTGCACTTATGTACTTCATTgtatcagtggggcggcccctgcccctctcctctgagcaaaccctgctctt #### Zdhhc16_ID8347_4 --> 1 - 1 Original Alignment gTGTGTGCTGAAGATG-GATCATCACTGCc atcccaagattctcggctgccctagcagtctggctttttttcctctgaaggTGTGTGCTGAAGATGCGATCATCACTGTcgtgagtttttgttcgcttcagccacgaccttttgttttgcccttagagga Alignment from CESAR gTGTGTGCTGAAGATG-GATCATCACTGCc atcccaagattctcggctgccctagcagtctggctttttttcctctgaaggTGTGTGCTGAAGATGCGATCATCACTGTcgtgagtttttgttcgcttcagccacgaccttttgttttgcccttagagga Alignment from Spaln_aa2Genome GTGTGTGCTGAAGATG-GATCATCACTGCC atcccaagattctcggctgccctagcagtctggctttttttcctctgaagGTGTGTGCTGAAGATGcGATCATCACTGTCgtgagtttttgttcgcttcagccacgaccttttgttttgcccttagagga Alignment from Spaln_nt2Genome GTGTGTGCTGAAGATG-GATCATCACTGCC atcccaagattctcggctgccctagcagtctggctttttttcctctgaagGTGTGTGCTGAAGATGCGATCATCACTGTCgtgagtttttgttcgcttcagccacgaccttttgttttgcccttagagga Alignment from Pairagon GTGTGTGCTGAAGATG-GATCATCACTGCC atcccaagattctcggctgccctagcagtctggctttttttcctctgaagGTGTGTGCTGAAGATGCGATCATCACTGTCgtgagtttttgttcgcttcagccacgaccttttgttttgcccttagagga Alignment from Exonerate_protein2genome GTGTGTGCTGAAGATG-GATCATCACTGCC atcccaagattctcggctgccctagcagtctggctttttttcctctgaagGTGTGTGCTGAAGATGCGATCATCACTGTCgtgagtttttgttcgcttcagccacgaccttttgttttgcccttagagga Alignment from Exonerate_coding2genome atcccaagattctcggctgccctagcagtctggctttttttcctctgaaggtgtgtgctgaagatgcgatcatcactgtcgtgagtttttgttcgcttcagccacgaccttttgttttgcccttagagga Alignment from GeneWise atcccaagattctcggctgccctagcagtctggctttttttcctctgaaggtgtgtgctgaagatgcgatcatcactgtcgtgagtttttgttcgcttcagccacgaccttttgttttgcccttagagga #### Zp1_ID3061_11 --> 2 - 1 Original Alignment ggCGTCGACGATCCTCT-GGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAg accctttggccaccaggggtcatagtactctttaacttttctgtttttagggCGTCGACGATCCCCTCGGTCACCACAACATCACTCTCCGAGCCCTGGATATTGTAAGCTCTCCAGGCGCAGTGGGCTTTGAGGACGCAGCTAAACTTGAGCCCTCAggtgaggggatgtggggatgcacctaagtgtcttgaccctttctgtgatgc Alignment from CESAR ggCGTCGACGATCCTCT-GGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAg accctttggccaccaggggtcatagtactctttaacttttctgtttttagggCGTCGACGATCCCCTCGGTCACCACAACATCACTCTCCGAGCCCTGGATATTGTAAGCTCTCCAGGCGCAGTGGGCTTTGAGGACGCAGCTAAACTTGAGCCCTCAggtgaggggatgtggggatgcacctaagtgtcttgaccctttctgtgatgc Alignment from Spaln_aa2Genome GGCGTCGACGATCCTCT-GGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG accctttggccaccaggggtcatagtactctttaacttttctgtttttagGGCGTCGACGATCCCCTcGGTCACCACAACATCACTCTCCGAGCCCTGGATATTGTAAGCTCTCCAGGCGCAGTGGGCTTTGAGGACGCAGCTAAACTTGAGCCCTCAGgtgaggggatgtggggatgcacctaagtgtcttgaccctttctgtgatgc Alignment from Spaln_nt2Genome GGCGTCGACGATCCTCT-GGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG accctttggccaccaggggtcatagtactctttaacttttctgtttttagGGCGTCGACGATCCCCTCGGTCACCACAACATCACTCTCCGAGCCCTGGATATTGTAAGCTCTCCAGGCGCAGTGGGCTTTGAGGACGCAGCTAAACTTGAGCCCTCAGgtgaggggatgtggggatgcacctaagtgtcttgaccctttctgtgatgc Alignment from Pairagon GGCGTCGACGATCCTCT-GGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG accctttggccaccaggggtcatagtactctttaacttttctgtttttagGGCGTCGACGATCCCCTCGGTCACCACAACATCACTCTCCGAGCCCTGGATATTGTAAGCTCTCCAGGCGCAGTGGGCTTTGAGGACGCAGCTAAACTTGAGCCCTCAGgtgaggggatgtggggatgcacctaagtgtcttgaccctttctgtgatgc Alignment from Exonerate_protein2genome GGCGTCGACGATCCTCT-GGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG accctttggccaccaggggtcatagtactctttaacttttctgtttttagGGCGTCGACGATCCCCTCGGTCACCACAACATCACTCTCCGAGCCCTGGATATTGTAAGCTCTCCAGGCGCAGTGGGCTTTGAGGACGCAGCTAAACTTGAGCCCTCAGgtgaggggatgtggggatgcacctaagtgtcttgaccctttctgtgatgc Alignment from Exonerate_coding2genome GGCGTCGACGATCCTCT-GGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG accctttggccaccaggggtcatagtactctttaacttttctgtttttagGGCGTCGACGATCCCCTCGGTCACCACAACATCACTCTCCGAGCCCTGGATATTGTAAGCTCTCCAGGCGCAGTGGGCTTTGAGGACGCAGCTAAACTTGAGCCCTCAGgtgaggggatgtggggatgcacctaagtgtcttgaccctttctgtgatgc Alignment from GeneWise ------------TCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCTGCTAAACTTGAGCCCTCAG accctttggccaccaggggtcatagtactctttaacttttctgtttttagGGCGTCGACGATCCCCTCGGTCACCACAACATCACTCTCCGAGCCCTGGATATTGTAAGCTCTCCAGGCGCAGTGGGCTTTGAGGACGCAGCTAAACTTGAGCCCTCAGgtgaggggatgtggggatgcacctaagtgtcttgaccctttctgtgatgc #### Zp1_ID3064_8 --> 2 - 2 Original Alignment atAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGA-ACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATgg gcagcttaaagtacagcctgccccatgctttctcttctcttctcttgcagatAAGACTTTCAGCTCCTACTATCAGGGAAGTGACTACCCCCTTGTGAGACTGCTTCGGGAACCAGTCTATGTGGAGGTCCGACTCCTGCAGAAACACTGATCCCAGTCTGGTTCTGGTGTTACACCAGTGCTGGGCCACACCCACCACTAGC---TTTGAACAGCCCCAATGGCCTATTCTGTCAGATgggtaagtgatatgagaagactgtgctgcatccagggtcagaaggactttct Alignment from CESAR atAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGA-ACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATgg gcagcttaaagtacagcctgccccatgctttctcttctcttctcttgcagatAAGACTTTCAGCTCCTACTATCAGGGAAGTGACTACCCCCTTGTGAGACTGCTTCGGGAACCAGTCTATGTGGAGGTCCGACTCCTGCAGAAACACTGATCCCAGTCTGGTTCTGGTGTTACACCAGTGCTGGGCCACACCCACCACTAGC---TTTGAACAGCCCCAATGGCCTATTCTGTCAGATgggtaagtgatatgagaagactgtgctgcatccagggtcagaaggactttct Alignment from Spaln_aa2Genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGA-ACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttaaagtacagcctgccccatgctttctcttctcttctcttgcagATAAGACTTTCAGCTCCTACTATCAGGGAAGTGACTACCCCCTTGTGAGACTGCTTCGGGAACCAGTCTATGTGGAGGTCCGACTCCTGCAGAAAcACTGATCCCAGTCTGGTTCTGGTGTTACACCAGTGCTGGGCCACACCCACCACTAGC---TTTGAACAGCCCCAATGGCCTATTCTGTCAGATGGgtaagtgatatgagaagactgtgctgcatccagggtcagaaggactttct Alignment from Spaln_nt2Genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGA-ACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttaaagtacagcctgccccatgctttctcttctcttctcttgcagATAAGACTTTCAGCTCCTACTATCAGGGAAGTGACTACCCCCTTGTGAGACTGCTTCGGGAACCAGTCTATGTGGAGGTCCGACTCCTGCAGAAACACTGATCCCAGTCTGGTTCTGGTGTTACACCAGTGCTGGGCCACACCCACCACTAG---CTTTGAACAGCCCCAATGGCCTATTCTGTCAGATGGgtaagtgatatgagaagactgtgctgcatccagggtcagaaggactttct Alignment from Pairagon ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGA-ACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttaaagtacagcctgccccatgctttctcttctcttctcttgcagATAAGACTTTCAGCTCCTACTATCAGGGAAGTGACTACCCCCTTGTGAGACTGCTTCGGGAACCAGTCTATGTGGAGGTCCGACTCCTGCAGAAACACTGATCCCAGTCTGGTTCTGGTGTTACACCAGTGCTGGGCCACACCCACCACTAG---CTTTGAACAGCCCCAATGGCCTATTCTGTCAGATGGgtaagtgatatgagaagactgtgctgcatccagggtcagaaggactttct Alignment from Exonerate_protein2genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGA-ACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttaaagtacagcctgccccatgctttctcttctcttctcttgcagATAAGACTTTCAGCTCCTACTATCAGGGAAGTGACTACCCCCTTGTGAGACTGCTTCGGGAACCAGTCTATGTGGAGGTCCGACTCCTGCAGAAACACTGATCCCAGTCTGGTTCTGGTGTTACACCAGTGCTGGGCCACACCCACCACTAGC---TTTGAACAGCCCCAATGGCCTATTCTGTCAGATGGgtaagtgatatgagaagactgtgctgcatccagggtcagaaggactttct Alignment from Exonerate_coding2genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGA-ACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttaaagtacagcctgccccatgctttctcttctcttctcttgcagATAAGACTTTCAGCTCCTACTATCAGGGAAGTGACTACCCCCTTGTGAGACTGCTTCGGGAACCAGTCTATGTGGAGGTCCGACTCCTGCAGAAACACTGATCCCAGTCTGGTTCTGGTGTTACACCAGTGCTGGGCCACACCCACCACTAGC---TTTGAACAGCCCCAATGGCCTATTCTGTCAGATGGgtaagtgatatgagaagactgtgctgcatccagggtcagaaggactttct Alignment from GeneWise ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAG-AGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttaaagtacagcctgccccatgctttctcttctcttctcttgcagATAAGACTTTCAGCTCCTACTATCAGGGAAGTGACTACCCCCTTGTGAGACTGCTTCGGGAACCAGTCTATGTGGAGGTCCGACTCCTGCAGAAACACTGATCCCAGTCTGGTTCTGGTGTTACACCAGTGCTGGGCCACACCCACCACTAGC---TTTGAACAGCCCCAATGGCCTATTCTGTCAGATGGgtaagtgatatgagaagactgtgctgcatccagggtcagaaggactttct #### Zp1_ID3069_3 --> 0 - 1 Original Alignment GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAG-CCCTGGGAATTGACTGAGCTGGATTCTGTAg agtgtcaatttgccacactcagctgctccctcagcatagcctccccgcagGATGGACGGTTCCACCTGAGAGTTTTCATACAAGCCGTCTTACCAAACAGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCGGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCGTACCTTGGCTGGGTCTGGCCAT------CTCACAATGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCTACTGGATCAACTGTACCCCACTCCCAATGGGGTACACTTGAGCCCCTGGGAACTAACTGAGCTGGATTCTGTAggtgagtgagcctcctctgtgtacagtctaagtcctatgacctgtgagcta Alignment from CESAR GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCC-TGGGAATTGACTGAGCTGGATTCTGTAg agtgtcaatttgccacactcagctgctccctcagcatagcctccccgcagGATGGACGGTTCCACCTGAGAGTTTTCATACAAGCCGTCTTACCAAACAGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCGGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCGTACCTTGGCTGGGTCTGGCCAT------CTCACAATGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCTACTGGATCAACTGTACCCCACTCCCAATGGGGTACACTTGAGCCCCTGGGAACTAACTGAGCTGGATTCTGTAggtgagtgagcctcctctgtgtacagtctaagtcctatgacctgtgagcta Alignment from Spaln_aa2Genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCC-TGGGAATTGACTGAGCTGGATTCTGTAG agtgtcaatttgccacactcagctgctccctcagcatagcctccccgcagGATGGACGGTTCCACCTGAGAGTTTTCATACAAGCCGTCTTACCAAACAGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCGGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCGTACCTTGGCTGGGTCTGGCCAT------CTCACAATGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCTACTGGATCAACTGTACCCCACTCCCAATGGGGTACACTTGAGCCCcTGGGAACTAACTGAGCTGGATTCTGTAGgtgagtgagcctcctctgtgtacagtctaagtcctatgacctgtgagcta Alignment from Spaln_nt2Genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCC-CTGGGAATTGACTGAGCTGGATTCTGTAG agtgtcaatttgccacactcagctgctccctcagcatagcctccccgcagGATGGACGGTTCCACCTGAGAGTTTTCATACAAGCCGTCTTACCAAACAGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCGGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCGTACCTTGGCTGGGTCTGGCCA------TCTCACAATGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCTACTGGATCAACTGTACCCCACTCCCAATGGGGTACACTTGAGCCCCTGGGAACTAACTGAGCTGGATTCTGTAGgtgagtgagcctcctctgtgtacagtctaagtcctatgacctgtgagcta Alignment from Pairagon GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAG-CCCTGGGAATTGACTGAGCTGGATTCTGTAG agtgtcaatttgccacactcagctgctccctcagcatagcctccccgcagGATGGACGGTTCCACCTGAGAGTTTTCATACAAGCCGTCTTACCAAACAGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCGGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCGTACCTTGGCTGGGTCTGGCCA------TCTCACAATGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCTACTGGATCAACTGTACCCCACTCCCAATGGGGTACACTTGAGCCCCTGGGAACTAACTGAGCTGGATTCTGTAGgtgagtgagcctcctctgtgtacagtctaagtcctatgacctgtgagcta Alignment from Exonerate_protein2genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAG-CCCTGGGAATTGACTGAGCTGGATTCTGTAG agtgtcaatttgccacactcagctgctccctcagcatagcctccccgcagGATGGACGGTTCCACCTGAGAGTTTTCATACAAGCCGTCTTACCAAACAGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCGGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCGTACCTTGGCTGGGTCTGGCCAT------CTCACAATGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCTACTGGATCAACTGTACCCCACTCCCAATGGGGTACACTTGAGCCCCTGGGAACTAACTGAGCTGGATTCTGTAGgtgagtgagcctcctctgtgtacagtctaagtcctatgacctgtgagcta Alignment from Exonerate_coding2genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAG-CCCTGGGAATTGACTGAGCTGGATTCTGTAG agtgtcaatttgccacactcagctgctccctcagcatagcctccccgcagGATGGACGGTTCCACCTGAGAGTTTTCATACAAGCCGTCTTACCAAACAGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCGGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCGTACCTTGGCTGGGTCTGGCCAT------CTCACAATGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCTACTGGATCAACTGTACCCCACTCCCAATGGGGTACACTTGAGCCCCTGGGAACTAACTGAGCTGGATTCTGTAGgtgagtgagcctcctctgtgtacagtctaagtcctatgacctgtgagcta Alignment from GeneWise GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTG-GAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG agtgtcaatttgccacactcagctgctccctcagcatagcctccccgcagGATGGACGGTTCCACCTGAGAGTTTTCATACAAGCCGTCTTACCAAACAGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCGGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCGTACCTTGGCTGGGTCTGGCCAT------CTCACAATGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCTACTGGATCAACTGTACCCCACTCCCAATGGGGTACACTTGAGCCCCTGGGAACTAACTGAGCTGGATTCTGTAGgtgagtgagcctcctctgtgtacagtctaagtcctatgacctgtgagcta ####