#### 1700055N04Rik_ID225_3 --> 0 - 0 Original Alignment TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTG-TGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG acctgaaaagtggacctagcctaacttgctgcttttctcccgtcttttagTCAGGCCTCAAATCAGACATGAGTGAGATCATTCTGCTGTGAGAATGAGGTGGACCTGGCCCTTAAGAACCTGCAGACCTGGATGAAGGATGAACCTTTGTCCACCAACTTGgtgagtcacatcacaccagatacacaaacacacatgcatacaagtagacc Alignment from CESAR TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTG-TGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG acctgaaaagtggacctagcctaacttgctgcttttctcccgtcttttagTCAGGCCTCAAATCAGACATGAGTGAGATCATTCTGCTGTGAGAATGAGGTGGACCTGGCCCTTAAGAACCTGCAGACCTGGATGAAGGATGAACCTTTGTCCACCAACTTGgtgagtcacatcacaccagatacacaaacacacatgcatacaagtagacc Alignment from Spaln_aa2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTG-TGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG acctgaaaagtggacctagcctaacttgctgcttttctcccgtcttttagTCAGGCCTCAAATCAGACATGAGTGAGATCATTCTGcTGTGAGAATGAGGTGGACCTGGCCCTTAAGAACCTGCAGACCTGGATGAAGGATGAACCTTTGTCCACCAACTTGgtgagtcacatcacaccagatacacaaacacacatgcatacaagtagacc Alignment from Spaln_nt2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTG-TGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCT GCAGAC acctgaaaagtggacctagcctaacttgctgcttttctcccgtcttttagTCAGGCCTCAAATCAGACATGAGTGAGATCATTCTGCTGTGAGAATGAGGTGGACCTGGCCCTTAAGAACCTgcagacctggatgaaggatgaacctttgtccaccaacttggtgagtcacatcacaccagatacacaaacacacatgcatacaag-TAGAC Alignment from Pairagon TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTG-TGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG acctgaaaagtggacctagcctaacttgctgcttttctcccgtcttttagTCAGGCCTCAAATCAGACATGAGTGAGATCATTCTGCTGTGAGAATGAGGTGGACCTGGCCCTTAAGAACCTGCAGACCTGGATGAAGGATGAACCTTTGTCCACCAACTTGgtgagtcacatcacaccagatacacaaacacacatgcatacaagtagacc Alignment from Exonerate_protein2genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTG-TGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG acctgaaaagtggacctagcctaacttgctgcttttctcccgtcttttagTCAGGCCTCAAATCAGACATGAGTGAGATCATTCTGCTGTGAGAATGAGGTGGACCTGGCCCTTAAGAACCTGCAGACCTGGATGAAGGATGAACCTTTGTCCACCAACTTGgtgagtcacatcacaccagatacacaaacacacatgcatacaagtagacc Alignment from Exonerate_coding2genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTG-TGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG acctgaaaagtggacctagcctaacttgctgcttttctcccgtcttttagTCAGGCCTCAAATCAGACATGAGTGAGATCATTCTGCTGTGAGAATGAGGTGGACCTGGCCCTTAAGAACCTGCAGACCTGGATGAAGGATGAACCTTTGTCCACCAACTTGgtgagtcacatcacaccagatacacaaacacacatgcatacaagtagacc Alignment from GeneWise TCAGGCTTCGAGTCAGACATGAGTGAGATCATT-CTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG acctgaaaagtggacctagcctaacttgctgcttttctcccgtcttttagTCAGGCCTCAAATCAGACATGAGTGAGATCATTCTGCTGTGAGAATGAGGTGGACCTGGCCCTTAAGAACCTGCAGACCTGGATGAAGGATGAACCTTTGTCCACCAACTTGgtgagtcacatcacaccagatacacaaacacacatgcatacaagtagacc #### 1700055N04Rik_ID227_5 --> 2 - 0 Original Alignment gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCA-GAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagtgtgcaatcatcaatctgcttctctctcctcctggtcaggaAACTGTGTGGTGTTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCACGAGCTTCTACCTCAGTATCTAGATCAGgtaggtgatatgaggccctgtgaggtcggagcttgattttagcttaaaat Alignment from CESAR gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCA-GAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagtgtgcaatcatcaatctgcttctctctcctcctggtcaggaAACTGTGTGGTGTTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCACGAGCTTCTACCTCAGTATCTAGATCAGgtaggtgatatgaggccctgtgaggtcggagcttgattttagcttaaaat Alignment from Spaln_aa2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCA-GAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagtgtgcaatcatcaatctgcttctctctcctcctggtcagGAAACTGTGTGGTGTTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAcGAGCTTCTACCTCAGTATCTAGATCAGgtaggtgatatgaggccctgtgaggtcggagcttgattttagcttaaaat Alignment from Spaln_nt2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCA-GAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagtgtgcaatcatcaatctgcttctctctcctcctggtcagGAAACTGTGTGGTGTTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCACGAGCTTCTACCTCAGTATCTAGATCAGgtaggtgatatgaggccctgtgaggtcggagcttgattttagcttaaaat Alignment from Pairagon GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCA-GAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagtgtgcaatcatcaatctgcttctctctcctcctggtcagGAAACTGTGTGGTGTTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCACGAGCTTCTACCTCAGTATCTAGATCAGgtaggtgatatgaggccctgtgaggtcggagcttgattttagcttaaaat Alignment from Exonerate_protein2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCA-GAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagtgtgcaatcatcaatctgcttctctctcctcctggtcagGAAACTGTGTGGTGTTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCACGAGCTTCTACCTCAGTATCTAGATCAGgtaggtgatatgaggccctgtgaggtcggagcttgattttagcttaaaat Alignment from Exonerate_coding2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCA-GAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagtgtgcaatcatcaatctgcttctctctcctcctggtcagGAAACTGTGTGGTGTTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCACGAGCTTCTACCTCAGTATCTAGATCAGgtaggtgatatgaggccctgtgaggtcggagcttgattttagcttaaaat Alignment from GeneWise GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTG-GCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagtgtgcaatcatcaatctgcttctctctcctcctggtcagGAAACTGTGTGGTGTTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCACGAGCTTCTACCTCAGTATCTAGATCAGgtaggtgatatgaggccctgtgaggtcggagcttgattttagcttaaaat #### 1700055N04Rik_ID228_6 --> 0 - 1 Original Alignment AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAG-GAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAg aaagagcttgccccctgagttgtctccatgtgcaaatctatcttttccagAGCTGCTTTGCTGTGATGCTGGGAGGACCTGAGCGAGACTGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACGggtgaggagagccctgtcgagaaccaggggtagagcgatataatataatat Alignment from CESAR AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAG-GAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAg aaagagcttgccccctgagttgtctccatgtgcaaatctatcttttccagAGCTGCTTTGCTGTGATGCTGGGAGGACCTGAGCGAGACTGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACGggtgaggagagccctgtcgagaaccaggggtagagcgatataatataatat Alignment from Spaln_aa2Genome AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAG-GAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aaagagcttgccccctgagttgtctccatgtgcaaatctatcttttccagAGCTGCTTTGCTGTGATGCTGGGAGGACCTGAGcGAGACTGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACGGgtgaggagagccctgtcgagaaccaggggtagagcgatataatataatat Alignment from Spaln_nt2Genome AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAG-GAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aaagagcttgccccctgagttgtctccatgtgcaaatctatcttttccagAGCTGCTTTGCTGTGATGCTGGGAGGACCTGAGCGAGACTGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACGGgtgaggagagccctgtcgagaaccaggggtagagcgatataatataatat Alignment from Pairagon AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAG-GAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aaagagcttgccccctgagttgtctccatgtgcaaatctatcttttccagAGCTGCTTTGCTGTGATGCTGGGAGGACCTGAGCGAGACTGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACGGgtgaggagagccctgtcgagaaccaggggtagagcgatataatataatat Alignment from Exonerate_protein2genome AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAG-GAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aaagagcttgccccctgagttgtctccatgtgcaaatctatcttttccagAGCTGCTTTGCTGTGATGCTGGGAGGACCTGAGCGAGACTGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACGGgtgaggagagccctgtcgagaaccaggggtagagcgatataatataatat Alignment from Exonerate_coding2genome AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAG-GAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aaagagcttgccccctgagttgtctccatgtgcaaatctatcttttccagAGCTGCTTTGCTGTGATGCTGGGAGGACCTGAGCGAGACTGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACGGgtgaggagagccctgtcgagaaccaggggtagagcgatataatataatat Alignment from GeneWise AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAG-GAGACCGGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG aaagagcttgccccctgagttgtctccatgtgcaaatctatcttttccagAGCTGCTTTGCTGTGATGCTGGGAGGACCTGAGCGAGACTGGGCAACTGCTAGAACACAAATTTGACTATATCTTTTTCACGGgtgaggagagccctgtcgagaaccaggggtagagcgatataatataatat #### AI846148_ID2142_4 --> 2 - 1 Original Alignment ttACCCCTGTCATAGAG-CAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAg aagagtgagtggagtgaaatttgccaagcttccgctgtcttctttttcagttACCCCTGTCATAGAGCCAGGGGAATAAGAAGCCCCGTGGCCAAAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCCTGGACCCTGACCCAggtattctgagttgggggtgacatgtctgcacgactcaagcataaagtctg Alignment from CESAR ttACCCCTGTCATAGAG-CAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAg aagagtgagtggagtgaaatttgccaagcttccgctgtcttctttttcagttACCCCTGTCATAGAGCCAGGGGAATAAGAAGCCCCGTGGCCAAAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCCTGGACCCTGACCCAggtattctgagttgggggtgacatgtctgcacgactcaagcataaagtctg Alignment from Spaln_aa2Genome TTACCCCTGTCATAGAG-CAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggagtgaaatttgccaagcttccgctgtcttctttttcagTTACCCCTGTCATAGAGcCAGGGGAATAAGAAGCCCCGTGGCCAAAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCCTGGACCCTGACCCAGgtattctgagttgggggtgacatgtctgcacgactcaagcataaagtctg Alignment from Spaln_nt2Genome TTACCCCTGTCATAGAGCAAGGG-AATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggagtgaaatttgccaagcttccgctgtcttctttttcagTTACCCCTGTCATAGAGCCAGGGGAATAAGAAGCCCCGTGGCCAAAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCCTGGACCCTGACCCAGgtattctgagttgggggtgacatgtctgcacgactcaagcataaagtctg Alignment from Pairagon TTACCCCTGTCATAGAG-CAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggagtgaaatttgccaagcttccgctgtcttctttttcagTTACCCCTGTCATAGAGCCAGGGGAATAAGAAGCCCCGTGGCCAAAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCCTGGACCCTGACCCAGgtattctgagttgggggtgacatgtctgcacgactcaagcataaagtctg Alignment from Exonerate_protein2genome TTACCCCTGTCATAGAG-CAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggagtgaaatttgccaagcttccgctgtcttctttttcagTTACCCCTGTCATAGAGCCAGGGGAATAAGAAGCCCCGTGGCCAAAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCCTGGACCCTGACCCAGgtattctgagttgggggtgacatgtctgcacgactcaagcataaagtctg Alignment from Exonerate_coding2genome TTACCCCTGTCATAGAG-CAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggagtgaaatttgccaagcttccgctgtcttctttttcagTTACCCCTGTCATAGAGCCAGGGGAATAAGAAGCCCCGTGGCCAAAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCCTGGACCCTGACCCAGgtattctgagttgggggtgacatgtctgcacgactcaagcataaagtctg Alignment from GeneWise GCAAGGGAATAAAAAGCCCCGTGGTCAGAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCTTGGACCCTGACCCAG aagagtgagtggagtgaaatttgccaagcttccgctgtcttctttttcagttacccctgtcatagagCCAGGGGAATAAGAAGCCCCGTGGCCAAAGATGGAAAGAGTCCCCTGAGAATGAACCTGCTAGAAAGAAGAGAAGCAGGCATATGACCAAAATCCTGGACCCTGACCCAGgtattctgagttgggggtgacatgtctgcacgactcaagcataaagtctg #### AI846148_ID2143_3 --> 2 - 1 Original Alignment agTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCA-GAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCg aagagagagctgtgaaggctcccaagctccttctgtgtattctcttgcagaaTCAGGCCAGGATGGCCGGCCAGATCCCATCTCCAACCCAGATCCTGTCAGGATGCCAGCACGAGATAGTGGTGCTTTTAGATTCTGAAGACAACCCATCTCTTCCCACTAGGCTCCGACCCAGAGGACTCCGCCCCCTTGAACTGCCCagtgagacaccaaggaaccttaggtttggtaggacatcctatggtaaggga Alignment from CESAR agTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCA-GAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCg aagagagagctgtgaaggctcccaagctccttctgtgtattctcttgcagaaTCAGGCCAGGATGGCCGGCCAGATCCCATCTCCAACCCAGATCCTGTCAGGATGCCAGCACGAGATAGTGGTGCTTTTAGATTCTGAAGACAACCCATCTCTTCCCACTAGGCTCCGACCCAGAGGACTCCGCCCCCTTGAACTGCCCagtgagacaccaaggaaccttaggtttggtaggacatcctatggtaaggga Alignment from Spaln_aa2Genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCA-GAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG aagagagagctgtgaaggctcccaagctccttctgtgtattctcttgcagAATCAGGCCAGGATGGCCGGCCAGATCCCATCTCCAACCCAGATCCTGTCAGGATGCCAGCAcGAGATAGTGGTGCTTTTAGATTCTGAAGACAACCCATCTCTTCCCACTAGGCTCCGACCCAGAGGACTCCGCCCCCTTGAACTGCCCAgtgagacaccaaggaaccttaggtttggtaggacatcctatggtaaggga Alignment from Spaln_nt2Genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCA-GAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG aagagagagctgtgaaggctcccaagctccttctgtgtattctcttgcagAATCAGGCCAGGATGGCCGGCCAGATCCCATCTCCAACCCAGATCCTGTCAGGATGCCAGCACGAGATAGTGGTGCTTTTAGATTCTGAAGACAACCCATCTCTTCCCACTAGGCTCCGACCCAGAGGACTCCGCCCCCTTGAACTGCCCAgtgagacaccaaggaaccttaggtttggtaggacatcctatggtaaggga Alignment from Pairagon AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCA-GAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG aagagagagctgtgaaggctcccaagctccttctgtgtattctcttgcagAATCAGGCCAGGATGGCCGGCCAGATCCCATCTCCAACCCAGATCCTGTCAGGATGCCAGCACGAGATAGTGGTGCTTTTAGATTCTGAAGACAACCCATCTCTTCCCACTAGGCTCCGACCCAGAGGACTCCGCCCCCTTGAACTGCCCAgtgagacaccaaggaaccttaggtttggtaggacatcctatggtaaggga Alignment from Exonerate_protein2genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCA-GAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG aagagagagctgtgaaggctcccaagctccttctgtgtattctcttgcagAATCAGGCCAGGATGGCCGGCCAGATCCCATCTCCAACCCAGATCCTGTCAGGATGCCAGCACGAGATAGTGGTGCTTTTAGATTCTGAAGACAACCCATCTCTTCCCACTAGGCTCCGACCCAGAGGACTCCGCCCCCTTGAACTGCCCAgtgagacaccaaggaaccttaggtttggtaggacatcctatggtaaggga Alignment from Exonerate_coding2genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCA-GAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG aagagagagctgtgaaggctcccaagctccttctgtgtattctcttgcagAATCAGGCCAGGATGGCCGGCCAGATCCCATCTCCAACCCAGATCCTGTCAGGATGCCAGCACGAGATAGTGGTGCTTTTAGATTCTGAAGACAACCCATCTCTTCCCACTAGGCTCCGACCCAGAGGACTCCGCCCCCTTGAACTGCCCAgtgagacaccaaggaaccttaggtttggtaggacatcctatggtaaggga Alignment from GeneWise AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCA-GCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG aagagagagctgtgaaggctcccaagctccttctgtgtattctcttgcagAATCAGGCCAGGATGGCCGGCCAGATCCCATCTCCAACCCAGATCCTGTCAGGATGCCAGCACGAGATAGTGGTGCTTTTAGATTCTGAAGACAACCCATCTCTTCCCACTAGGCTCCGACCCAGAGGACTCCGCCCCCTTGAACTGCCCAgtgagacaccaaggaaccttaggtttggtaggacatcctatggtaaggga #### Actn3_ID691_19 --> 0 - 0 Original Alignment AAGCGGAATGGG-ATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG atgtggaggcctcacctgatagatattagtctcttctttgacctcctcagAAGCGGAATGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaggggccttgtccatttcaaaagcaccatcagatctcctcctcctgcc Alignment from CESAR AAGCGGAATGGG-ATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG aggaggaggcctcacctgatagatattagtctcttctttgacctcctcagAAGCGGAATGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaggggccttgtccatttcaaaagcaccatcagatctcctcctcctgcc Alignment from Spaln_aa2Genome AAGCGGAAT-GGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG atgtggaggcctcacctgatagatattagtctcttctttgacctcctcagAAGCGGAATgGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaggggccttgtccatttcaaaagcaccatcagatctcctcctcctgcc Alignment from Spaln_nt2Genome AAGCGGAATGGG-ATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG atgtggaggcctcacctgatagatattagtctcttctttgacctcctcagAAGCGGAATGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaggggccttgtccatttcaaaagcaccatcagatctcctcctcctgcc Alignment from Pairagon AAGCGGAATGGG-ATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG atgtggaggcctcacctgatagatattagtctcttctttgacctcctcagAAGCGGAATGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaggggccttgtccatttcaaaagcaccatcagatctcctcctcctgcc Alignment from Exonerate_protein2genome AAGCGGAAT-GGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG atgtggaggcctcacctgatagatattagtctcttctttgacctcctcagAAGCGGAATGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaggggccttgtccatttcaaaagcaccatcagatctcctcctcctgcc Alignment from Exonerate_coding2genome AAGCGGAAT-GGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG atgtggaggcctcacctgatagatattagtctcttctttgacctcctcagAAGCGGAATGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaggggccttgtccatttcaaaagcaccatcagatctcctcctcctgcc Alignment from GeneWise G--CGGAAT---------------------------------------------------GGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG ATGTGGAGGCCTCACCTGATAGATATTAGTCTCTTCTTTGACCTCCTCAGAAGCGGAATGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaggggccttgtccatttcaaaagcaccatcagatctcctcctcctgcc #### Actn3_ID692_18 --> 0 - 0 Original Alignment CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCC-ATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCACTTTGACCGG ttaacccaatacttgactactccccaacgtgctcactgtttttctggtagCACATTCGTGTGGGCTGGGAGCAATTGCTCACCTCCCATTGCCCGCACCATCAATGAAGTTGATAACCAGGTACTTACTAGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAATGAATTCCGTGCCTCCTTCAACTACTTTGACCGGgtaggaggaggcctcacctgatagatattaaccatgtctgctctccccac Alignment from CESAR CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCC-ATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCACTTTGACCGG ttaacccaatacttgactactccccaacgtgctcactgtttttctggtagCACATTCGTGTGGGCTGGGAGCAATTGCTCACCTCCCATTGCCCGCACCATCAATGAAGTTGATAACCAGGTACTTACTAGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAATGAATTCCGTGCCTCCTTCAACTACTTTGACCGGgtaggaggaggcctcacctgatagatattagtctcttctttgacctcctc Alignment from Spaln_aa2Genome CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCC-ATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCACTTTGACCGG ttaacccaatacttgactactccccaacgtgctcactgtttttctggtagCACATTCGTGTGGGCTGGGAGCAATTGCTCACCTCCcATTGCCCGCACCATCAATGAAGTTGATAACCAGGTACTTACTAGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAATGAATTCCGTGCCTCCTTCAACTACTTTGACCGGgtaggaggaggcctcacctgatagatattaaccatgtctgctctccccac Alignment from Spaln_nt2Genome CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCT-CCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCACTTTGACCGG ttaacccaatacttgactactccccaacgtgctcactgtttttctggtagCACATTCGTGTGGGCTGGGAGCAATTGCTCACCTCCCATTGCCCGCACCATCAATGAAGTTGATAACCAGGTACTTACTAGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAATGAATTCCGTGCCTCCTTCAACTACTTTGACCGGgtaggaggaggcctcacctgatagatattaaccatgtctgctctccccac Alignment from Pairagon CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCT-CCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCACTTTGACCGG ttaacccaatacttgactactccccaacgtgctcactgtttttctggtagCACATTCGTGTGGGCTGGGAGCAATTGCTCACCTCCCATTGCCCGCACCATCAATGAAGTTGATAACCAGGTACTTACTAGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAATGAATTCCGTGCCTCCTTCAACTACTTTGACCGGgtaggaggaggcctcacctgatagatattaaccatgtctgctctccccac Alignment from Exonerate_protein2genome CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCC-ATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCACTTTGACCGG ttaacccaatacttgactactccccaacgtgctcactgtttttctggtagCACATTCGTGTGGGCTGGGAGCAATTGCTCACCTCCCATTGCCCGCACCATCAATGAAGTTGATAACCAGGTACTTACTAGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAATGAATTCCGTGCCTCCTTCAACTACTTTGACCGGgtaggaggaggcctcacctgatagatattaaccatgtctgctctccccac Alignment from Exonerate_coding2genome CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCC-ATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCACTTTGACCGG ttaacccaatacttgactactccccaacgtgctcactgtttttctggtagCACATTCGTGTGGGCTGGGAGCAATTGCTCACCTCCCATTGCCCGCACCATCAATGAAGTTGATAACCAGGTACTTACTAGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAATGAATTCCGTGCCTCCTTCAACTACTTTGACCGGgtaggaggaggcctcacctgatagatattaaccatgtctgctctccccac Alignment from GeneWise CACATTCGTGTGGGCTGGGAGCAGTTGCTCACC-TCCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCACTTTGACCGG ttaacccaatacttgactactccccaacgtgctcactgtttttctggtagCACATTCGTGTGGGCTGGGAGCAATTGCTCACCTCCCATTGCCCGCACCATCAATGAAGTTGATAACCAGGTACTTACTAGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAATGAATTCCGTGCCTCCTTCAACTACTTTGACCGGgtaggaggaggcctcacctgatagatattaaccatgtctgctctccccac #### Actn3_ID694_16 --> 0 - 0 Original Alignment GTCAGA---AAGCTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAG-CAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG caccttattactcgcagagttggctattaaataaccaatttcttgtatagGTCAGAAAAAAGCTGGTCCCTGCCCGTGACCAGACACTCCAGGAGAAGCTGGCCCGGCAGCCAAGTGAATGAGAGGTCACGGCGGCAGTTTACAGCCCAGGCTAATGCCATAGGGCCCTGGATCCAGGGAAAGGTGGAGgtgagtgttgggaggctgggccaatacagggatcggcatgaagcccagct Alignment from CESAR GTCAGA---AAGCTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAG-CAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG caccttattactcgcagagttggctattaaataaccaatttcttgtatagGTCAGAAAAAAGCTGGTCCCTGCCCGTGACCAGACACTCCAGGAGAAGCTGGCCCGGCAGCCAAGTGAATGAGAGGTCACGGCGGCAGTTTACAGCCCAGGCTAATGCCATAGGGCCCTGGATCCAGGGAAAGGTGGAGgtgagtgttgggaggctgggccaatacagggatcggcatgaagcccagct Alignment from Spaln_aa2Genome GTCAGAAAGCTGGTA---CCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAG-CAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG caccttattactcgcagagttggctattaaataaccaatttcttgtatagGTCAGAAAAAAGCTGGTCCCTGCCCGTGACCAGACACTCCAGGAGAAGCTGGCCCGGCAGcCAAGTGAATGAGAGGTCACGGCGGCAGTTTACAGCCCAGGCTAATGCCATAGGGCCCTGGATCCAGGGAAAGGTGGAGgtgagtgttgggaggctgggccaatacagggatcggcatgaagcccagct Alignment from Spaln_nt2Genome GTCAGAAA---GCTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAG-CAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG caccttattactcgcagagttggctattaaataaccaatttcttgtatagGTCAGAAAAAAGCTGGTCCCTGCCCGTGACCAGACACTCCAGGAGAAGCTGGCCCGGCAGCCAAGTGAATGAGAGGTCACGGCGGCAGTTTACAGCCCAGGCTAATGCCATAGGGCCCTGGATCCAGGGAAAGGTGGAGgtgagtgttgggaggctgggccaatacagggatcggcatgaagcccagct Alignment from Pairagon GTCAG---AAAGCTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAG-CAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG caccttattactcgcagagttggctattaaataaccaatttcttgtatagGTCAGAAAAAAGCTGGTCCCTGCCCGTGACCAGACACTCCAGGAGAAGCTGGCCCGGCAGCCAAGTGAATGAGAGGTCACGGCGGCAGTTTACAGCCCAGGCTAATGCCATAGGGCCCTGGATCCAGGGAAAGGTGGAGgtgagtgttgggaggctgggccaatacagggatcggcatgaagcccagct Alignment from Exonerate_protein2genome GTCAGA---AAGCTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAG-CAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG caccttattactcgcagagttggctattaaataaccaatttcttgtatagGTCAGAAAAAAGCTGGTCCCTGCCCGTGACCAGACACTCCAGGAGAAGCTGGCCCGGCAGCCAAGTGAATGAGAGGTCACGGCGGCAGTTTACAGCCCAGGCTAATGCCATAGGGCCCTGGATCCAGGGAAAGGTGGAGgtgagtgttgggaggctgggccaatacagggatcggcatgaagcccagct Alignment from Exonerate_coding2genome GTCAGA---AAGCTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAG-CAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG caccttattactcgcagagttggctattaaataaccaatttcttgtatagGTCAGAAAAAAGCTGGTCCCTGCCCGTGACCAGACACTCCAGGAGAAGCTGGCCCGGCAGCCAAGTGAATGAGAGGTCACGGCGGCAGTTTACAGCCCAGGCTAATGCCATAGGGCCCTGGATCCAGGGAAAGGTGGAGgtgagtgttgggaggctgggccaatacagggatcggcatgaagcccagct Alignment from GeneWise GTCAGAAAG---CTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAG-CAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG caccttattactcgcagagttggctattaaataaccaatttcttgtatagGTCAGAAAAAAGCTGGTCCCTGCCCGTGACCAGACACTCCAGGAGAAGCTGGCCCGGCAGCCAAGTGAATGAGAGGTCACGGCGGCAGTTTACAGCCCAGGCTAATGCCATAGGGCCCTGGATCCAGGGAAAGGTGGAGgtgagtgttgggaggctgggccaatacagggatcggcatgaagcccagct #### Actn3_ID695_15 --> 0 - 0 Original Alignment AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAAC-CCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatgggcatactggatctatttgctttatcttgcagAGCCTACTAACAGCACATGAACAGTTCAAGGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCTAGGCATCCAAGGAGAGATTCCAAAGATCTGCCAAACATACGGGCTGCGGCCCAAGTCTGGTAACCCCCTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaagtaaccctgtgtgttccttacttattcttgcacatttaatacaatg Alignment from CESAR AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCC-TACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatgggcatactggatctatttgctttatcttgcagAGCCTACTAACAGCACATGAACAGTTCAAGGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCTAGGCATCCAAGGAGAGATTCCAAAGATCTGCCAAACATACGGGCTGCGGCCCAAGTCTGGTAACCCCCTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaagtaaccctgtgtgttccttacttattcttgcacatttaatacaatg Alignment from Spaln_aa2Genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCC-TACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatgggcatactggatctatttgctttatcttgcagAGCCTACTAACAGCACATGAACAGTTCAAGGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCTAGGCATCCAAGGAGAGATTCCAAAGATCTGCCAAACATACGGGCTGCGGCCCAAGTCTGGTAACCCCcTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaagtaaccctgtgtgttccttacttattcttgcacatttaatacaatg Alignment from Spaln_nt2Genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAA-CCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatgggcatactggatctatttgctttatcttgcagAGCCTACTAACAGCACATGAACAGTTCAAGGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCTAGGCATCCAAGGAGAGATTCCAAAGATCTGCCAAACATACGGGCTGCGGCCCAAGTCTGGTAACCCCCTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaagtaaccctgtgtgttccttacttattcttgcacatttaatacaatg Alignment from Pairagon AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAA-CCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatgggcatactggatctatttgctttatcttgcagAGCCTACTAACAGCACATGAACAGTTCAAGGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCTAGGCATCCAAGGAGAGATTCCAAAGATCTGCCAAACATACGGGCTGCGGCCCAAGTCTGGTAACCCCCTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaagtaaccctgtgtgttccttacttattcttgcacatttaatacaatg Alignment from Exonerate_protein2genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAAC-CCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatgggcatactggatctatttgctttatcttgcagAGCCTACTAACAGCACATGAACAGTTCAAGGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCTAGGCATCCAAGGAGAGATTCCAAAGATCTGCCAAACATACGGGCTGCGGCCCAAGTCTGGTAACCCCCTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaagtaaccctgtgtgttccttacttattcttgcacatttaatacaatg Alignment from Exonerate_coding2genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAAC-CCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatgggcatactggatctatttgctttatcttgcagAGCCTACTAACAGCACATGAACAGTTCAAGGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCTAGGCATCCAAGGAGAGATTCCAAAGATCTGCCAAACATACGGGCTGCGGCCCAAGTCTGGTAACCCCCTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaagtaaccctgtgtgttccttacttattcttgcacatttaatacaatg Alignment from GeneWise AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGC-AACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatgggcatactggatctatttgctttatcttgcagAGCCTACTAACAGCACATGAACAGTTCAAGGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCTAGGCATCCAAGGAGAGATTCCAAAGATCTGCCAAACATACGGGCTGCGGCCCAAGTCTGGTAACCCCCTACATCACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaagtaaccctgtgtgttccttacttattcttgcacatttaatacaatg #### Actn3_ID700_10 --> 0 - 0 Original Alignment CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAG-TTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agataggtgagataggtcagctcagaactctttttttttttgaacctcagCTGTTGGAGTGGATCCGCCGGACTGTTCCATGGCTAGAGAACCGTGTGGCTGAACCTAGCATGAGTGCCATGCAGCGCAAGCTAGAAGACTTCCGAGACTATCAACACCTACACAAGCCACCCTGTGTCCAGGAGACATGCCAGCTAGAGATCAACTTCAACACACTGCAGGCTAAGCTCTCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGCTAGTTTCAgtactgccagcagggcatgctgggtgttatagctttgcctatatgccctt Alignment from CESAR CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTG-CGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agataggtgagataggtcagctcagaactctttttttttttgaacctcagCTGTTGGAGTGGATCCGCCGGACTGTTCCATGGCTAGAGAACCGTGTGGCTGAACCTAGCATGAGTGCCATGCAGCGCAAGCTAGAAGACTTCCGAGACTATCAACACCTACACAAGCCACCCTGTGTCCAGGAGACATGCCAGCTAGAGATCAACTTCAACACACTGCAGGCTAAGCTCTCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGCTAGTTTCAgtactgccagcagggcatgctgggtgttatagctttgcctatatgccctt Alignment from Spaln_aa2Genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTG-CGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agataggtgagataggtcagctcagaactctttttttttttgaacctcagCTGTTGGAGTGGATCCGCCGGACTGTTCCATGGCTAGAGAACCGTGTGGCTGAACCTAGCATGAGTGCCATGCAGCGCAAGCTAGAAGACTTCCGAGACTATCAACACCTACACAAGCCACCCTGTGTCCAGGAGACATGCCAGCTAGAGATCAACTTCAACACACTGCAGGCTAAGCTCtCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGCTAGTTTCAgtactgccagcagggcatgctgggtgttatagctttgcctatatgccctt Alignment from Spaln_nt2Genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTG-CGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agataggtgagataggtcagctcagaactctttttttttttgaacctcagCTGTTGGAGTGGATCCGCCGGACTGTTCCATGGCTAGAGAACCGTGTGGCTGAACCTAGCATGAGTGCCATGCAGCGCAAGCTAGAAGACTTCCGAGACTATCAACACCTACACAAGCCACCCTGTGTCCAGGAGACATGCCAGCTAGAGATCAACTTCAACACACTGCAGGCTAAGCTCTCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGCTAGTTTCAgtactgccagcagggcatgctgggtgttatagctttgcctatatgccctt Alignment from Pairagon CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTG-CGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agataggtgagataggtcagctcagaactctttttttttttgaacctcagCTGTTGGAGTGGATCCGCCGGACTGTTCCATGGCTAGAGAACCGTGTGGCTGAACCTAGCATGAGTGCCATGCAGCGCAAGCTAGAAGACTTCCGAGACTATCAACACCTACACAAGCCACCCTGTGTCCAGGAGACATGCCAGCTAGAGATCAACTTCAACACACTGCAGGCTAAGCTCTCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGCTAGTTTCAgtactgccagcagggcatgctgggtgttatagctttgcctatatgccctt Alignment from Exonerate_protein2genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTG-CGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agataggtgagataggtcagctcagaactctttttttttttgaacctcagCTGTTGGAGTGGATCCGCCGGACTGTTCCATGGCTAGAGAACCGTGTGGCTGAACCTAGCATGAGTGCCATGCAGCGCAAGCTAGAAGACTTCCGAGACTATCAACACCTACACAAGCCACCCTGTGTCCAGGAGACATGCCAGCTAGAGATCAACTTCAACACACTGCAGGCTAAGCTCTCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGCTAGTTTCAgtactgccagcagggcatgctgggtgttatagctttgcctatatgccctt Alignment from Exonerate_coding2genome CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTG-CGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agataggtgagataggtcagctcagaactctttttttttttgaacctcagCTGTTGGAGTGGATCCGCCGGACTGTTCCATGGCTAGAGAACCGTGTGGCTGAACCTAGCATGAGTGCCATGCAGCGCAAGCTAGAAGACTTCCGAGACTATCAACACCTACACAAGCCACCCTGTGTCCAGGAGACATGCCAGCTAGAGATCAACTTCAACACACTGCAGGCTAAGCTCTCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGCTAGTTTCAgtactgccagcagggcatgctgggtgttatagctttgcctatatgccctt Alignment from GeneWise CTGTTGGAGTGGATCCGCCGCACTGTCCCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAG-TTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG agataggtgagataggtcagctcagaactctttttttttttgaacctcagCTGTTGGAGTGGATCCGCCGGACTGTTCCATGGCTAGAGAACCGTGTGGCTGAACCTAGCATGAGTGCCATGCAGCGCAAGCTAGAAGACTTCCGAGACTATCAACACCTACACAAGCCACCCTGTGTCCAGGAGACATGCCAGCTAGAGATCAACTTCAACACACTGCAGGCTAAGCTCTCGCCTGAGCCACCAACCTGCTTTCATGCCCTCTGAGGGCAAGCTAGTTTCAgtactgccagcagggcatgctgggtgttatagctttgcctatatgccctt #### Actr1a_ID9871_9 --> 2 - 0 Original Alignment gtTTTGGAGACAGGCTACTGAGTGAAGTGAAGAAA-CTAGCTCCAAAAGACGTGAAGATCAGG ttctttgctagtcgtcgtcctttttttttcttcctctcccaaccccccaggtTTTGGAGACAAACTACTGAGTGAAGTAAAGAAACGTTGCTCTGAAAGATGTGAAGATCAGGgtgagttgaactggaggttgggcaggtacagtaccagggctccagaatca Alignment from CESAR gtTTTGGAGACAGGCTACTGAGTGAAGTGAAGAAA-CTAGCTCCAAAAGACGTGAAGATCAGG ttctttgctagtcgtcgtcctttttttttcttcctctcccaaccccccaggtTTTGGAGACAAACTACTGAGTGAAGTAAAGAAACGTTGCTCTGAAAGATGTGAAGATCAGGgtgagttgaactggaggttgggcaggtacagtaccagggctccagaatca Alignment from Spaln_aa2Genome GTTTTGGAGACAGGCTACTGAGTGAAGTGAAGAAA-CTAGCTCCAAAAGACGTGAAGATCAGG ttctttgctagtcgtcgtcctttttttttcttcctctcccaaccccccagGTTTTGGAGACAAACTACTGAGTGAAGTAAAGAAAcGTTGCTCTGAAAGATGTGAAGATCAGGgtgagttgaactggaggttgggcaggtacagtaccagggctccagaatca Alignment from Spaln_nt2Genome GTTTTGGAGACAGGCTACTGAGTGAAGTGAAGAAAC-TAGCTCCAAAAGACGTGAAGATCAGG ttctttgctagtcgtcgtcctttttttttcttcctctcccaaccccccagGTTTTGGAGACAAACTACTGAGTGAAGTAAAGAAACGTTGCTCTGAAAGATGTGAAGATCAGGgtgagttgaactggaggttgggcaggtacagtaccagggctccagaatca Alignment from Pairagon GTTTTGGAGACAGGCTACTGAGTGAAGTGAAGAAAC-TAGCTCCAAAAGACGTGAAGATCAGG ttctttgctagtcgtcgtcctttttttttcttcctctcccaaccccccagGTTTTGGAGACAAACTACTGAGTGAAGTAAAGAAACGTTGCTCTGAAAGATGTGAAGATCAGGgtgagttgaactggaggttgggcaggtacagtaccagggctccagaatca Alignment from Exonerate_protein2genome GTTTTGGAGACAGGCTACTGAGTGAAGTGAAGAAA-CTAGCTCCAAAAGACGTGAAGATCAGG ttctttgctagtcgtcgtcctttttttttcttcctctcccaaccccccagGTTTTGGAGACAAACTACTGAGTGAAGTAAAGAAACGTTGCTCTGAAAGATGTGAAGATCAGGgtgagttgaactggaggttgggcaggtacagtaccagggctccagaatca Alignment from Exonerate_coding2genome GTTTTGGAGACAGGCTACTGAGTGAAGTGAAGAAA-CTAGCTCCAAAAGACGTGAAGATCAGG ttctttgctagtcgtcgtcctttttttttcttcctctcccaaccccccagGTTTTGGAGACAAACTACTGAGTGAAGTAAAGAAACGTTGCTCTGAAAGATGTGAAGATCAGGgtgagttgaactggaggttgggcaggtacagtaccagggctccagaatca Alignment from GeneWise ttctttgctagtcgtcgtcctttttttttcttcctctcccaaccccccaggttttggagacaaactactgagtgaagtaaagaaacgttgctctgaaagatgtgaagatcagggtgagttgaactggaggttgggcaggtacagtaccagggctccagaatca #### Acy3_ID251_5 --> 2 - 0 Original Alignment gcATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGAC-CTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgagggctctctgtctgtcattccaggcATGGACTTACCAGCCTTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCCGATGGTGACCCTAGCTGGCACTGTGCACCCACAACTACAGgtgagggttgtgggtgccagggtaggagtactgtgaacacccgactgaac Alignment from CESAR gcATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGAC-CTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgagggctctctgtctgtcattccaggcATGGACTTACCAGCCTTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCCGATGGTGACCCTAGCTGGCACTGTGCACCCACAACTACAGgtgagggttgtgggtgccagggtaggagtactgtgaacacccgactgaac Alignment from Spaln_aa2Genome GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGAC-CTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgagggctctctgtctgtcattccagGCATGGACTTACCAGCCTTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCCGATGGTGACcCTAGCTGGCACTGTGCACCCACAACTACAGgtgagggttgtgggtgccagggtaggagtactgtgaacacccgactgaac Alignment from Spaln_nt2Genome GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACC-TGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgagggctctctgtctgtcattccagGCATGGACTTACCAGCCTTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCCGATGGTGACCCTAGCTGGCACTGTGCACCCACAACTACAGgtgagggttgtgggtgccagggtaggagtactgtgaacacccgactgaac Alignment from Pairagon GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGA-CCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgagggctctctgtctgtcattccagGCATGGACTTACCAGCCTTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCCGATGGTGACCCTAGCTGGCACTGTGCACCCACAACTACAGgtgagggttgtgggtgccagggtaggagtactgtgaacacccgactgaac Alignment from Exonerate_protein2genome GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGAC-CTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgagggctctctgtctgtcattccagGCATGGACTTACCAGCCTTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCCGATGGTGACCCTAGCTGGCACTGTGCACCCACAACTACAGgtgagggttgtgggtgccagggtaggagtactgtgaacacccgactgaac Alignment from Exonerate_coding2genome GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGAC-CTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgagggctctctgtctgtcattccagGCATGGACTTACCAGCCTTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCCGATGGTGACCCTAGCTGGCACTGTGCACCCACAACTACAGgtgagggttgtgggtgccagggtaggagtactgtgaacacccgactgaac Alignment from GeneWise GCATGGACTTACCCGCCTTTGAGATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGAC-CTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgagggctctctgtctgtcattccagGCATGGACTTACCAGCCTTTGAGATGGATATCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCCGATGGTGACCCTAGCTGGCACTGTGCACCCACAACTACAGgtgagggttgtgggtgccagggtaggagtactgtgaacacccgactgaac #### Adrbk1_ID477_18 --> 2 - 0 Original Alignment acTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAG-CGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG acaagcacacaagtgacttggtgggtggcatctcatctttgtctccacagacTATGCCTTGGGTAAGGACTGCATAGTAGATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAACCGGAGATACTTCTACTTGTTCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtggataaaaggtcaggcagagcatggagtgggtatcagggtgcacccta Alignment from CESAR acTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAG-CGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG acaagcacacaagtgacttggtgggtggcatctcatctttgtctccacagacTATGCCTTGGGTAAGGACTGCATAGTAGATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAACCGGAGATACTTCTACTTGTTCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtggataaaaggtcaggcagagcatggagtgggtatcagggtgcacccta Alignment from Spaln_aa2Genome ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAG-CGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG acaagcacacaagtgacttggtgggtggcatctcatctttgtctccacagACTATGCCTTGGGTAAGGACTGCATAGTAGATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAAcCGGAGATACTTCTACTTGTTCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtggataaaaggtcaggcagagcatggagtgggtatcagggtgcacccta Alignment from Spaln_nt2Genome ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGC-GGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG acaagcacacaagtgacttggtgggtggcatctcatctttgtctccacagACTATGCCTTGGGTAAGGACTGCATAGTAGATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAACCGGAGATACTTCTACTTGTTCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtggataaaaggtcaggcagagcatggagtgggtatcagggtgcacccta Alignment from Pairagon ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAG-CGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG acaagcacacaagtgacttggtgggtggcatctcatctttgtctccacagACTATGCCTTGGGTAAGGACTGCATAGTAGATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAACCGGAGATACTTCTACTTGTTCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtggataaaaggtcaggcagagcatggagtgggtatcagggtgcacccta Alignment from Exonerate_protein2genome ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAG-CGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG acaagcacacaagtgacttggtgggtggcatctcatctttgtctccacagACTATGCCTTGGGTAAGGACTGCATAGTAGATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAACCGGAGATACTTCTACTTGTTCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtggataaaaggtcaggcagagcatggagtgggtatcagggtgcacccta Alignment from Exonerate_coding2genome ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAG-CGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG acaagcacacaagtgacttggtgggtggcatctcatctttgtctccacagACTATGCCTTGGGTAAGGACTGCATAGTAGATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAACCGGAGATACTTCTACTTGTTCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtggataaaaggtcaggcagagcatggagtgggtatcagggtgcacccta Alignment from GeneWise ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGG-CAGCGGCGATACTTCTACTTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG acaagcacacaagtgacttggtgggtggcatctcatctttgtctccacagACTATGCCTTGGGTAAGGACTGCATAGTAGATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAACCGGAGATACTTCTACTTGTTCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtggataaaaggtcaggcagagcatggagtgggtatcagggtgcacccta #### Adrbk1_ID478_17 --> 0 - 1 Original Alignment TTACTGGACAGTGACCAGGAACTGTACCGCAACTTC-CCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGg ctggcacccatgatctactcatacatcctcttctctctggcctcttccagTTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCCTCTTACCATCTCTGAGTGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTTGAGGCACAAAAA---GCCAAAAACAAACAGCTGGGTCAGGAGGAGggtaagtacgtgccacccaccttagaccgcaggagtggaatgagagtctgc Alignment from CESAR TTACTGGACAGTGACCAGGAACTGTACCGCAACTTC-CCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGg ctggcacccatgatctactcatacatcctcttctctctggcctcttccagTTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCCTCTTACCATCTCTGAGTGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTTGAGGCACAA---AAAGCCAAAAACAAACAGCTGGGTCAGGAGGAGggtaagtacgtgccacccaccttagaccgcaggagtggaatgagagtctgc Alignment from Spaln_aa2Genome TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCT-CTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG ctggcacccatgatctactcatacatcctcttctctctggcctcttccagTTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCCtCTTACCATCTCTGAGTGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTTGAGGCACAAAAA---GCCAAAAACAAACAGCTGGGTCAGGAGGAGGgtaagtacgtgccacccaccttagaccgcaggagtggaatgagagtctgc Alignment from Spaln_nt2Genome TTACTGGACAGTGACCAGGAACTGTACCGCAACTT-CCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG ctggcacccatgatctactcatacatcctcttctctctggcctcttccagTTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCCTCTTACCATCTCTGAGTGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTTGAGGCAC---AAAAAGCCAAAAACAAACAGCTGGGTCAGGAGGAGGgtaagtacgtgccacccaccttagaccgcaggagtggaatgagagtctgc Alignment from Pairagon TTACTGGACAGTGACCAGGAACTGTACCGCAACTT-CCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG ctggcacccatgatctactcatacatcctcttctctctggcctcttccagTTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCCTCTTACCATCTCTGAGTGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTTGAGGCAC---AAAAAGCCAAAAACAAACAGCTGGGTCAGGAGGAGGgtaagtacgtgccacccaccttagaccgcaggagtggaatgagagtctgc Alignment from Exonerate_protein2genome TTACTGGACAGTGACCAGGAACTGTACCGCAACTTC-CCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG ctggcacccatgatctactcatacatcctcttctctctggcctcttccagTTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCCTCTTACCATCTCTGAGTGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTTGAGGCA---CAAAAAGCCAAAAACAAACAGCTGGGTCAGGAGGAGGgtaagtacgtgccacccaccttagaccgcaggagtggaatgagagtctgc Alignment from Exonerate_coding2genome TTACTGGACAGTGACCAGGAACTGTACCGCAACTTC-CCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG ctggcacccatgatctactcatacatcctcttctctctggcctcttccagTTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCCTCTTACCATCTCTGAGTGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTTGAGGCA---CAAAAAGCCAAAAACAAACAGCTGGGTCAGGAGGAGGgtaagtacgtgccacccaccttagaccgcaggagtggaatgagagtctgc Alignment from GeneWise TTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCT-CTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG ctggcacccatgatctactcatacatcctcttctctctggcctcttccagTTACTGGACAGTGACCAGGAACTGTACCGCAACTTCCCCTCTTACCATCTCTGAGTGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTTGAGGCACAAAAA---GCCAAAAACAAACAGCTGGGTCAGGAGGAGGgtaagtacgtgccacccaccttagaccgcaggagtggaatgagagtctgc #### Adrbk1_ID479_16 --> 0 - 0 Original Alignment TACCCTCCTCCACTGATCCCCCCACGTGGGGAG-GTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctgctgccactccctcccccataatgattcacgtgccaatctttaccagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGCGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtgagtcacctgctcagctcagagtcctgtgcctggatcatgaggctgag Alignment from CESAR TACCCTCCTCCACTGATCCCCCCACGTGGGGAG-GTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctgctgccactccctcccccataatgattcacgtgccaatctttaccagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGCGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtgagtcacctgctcagctcagagtcctgtgcctggatcatgaggctgag Alignment from Spaln_aa2Genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAG-GTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctgctgccactccctcccccataatgattcacgtgccaatctttaccagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGcGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtgagtcacctgctcagctcagagtcctgtgcctggatcatgaggctgag Alignment from Spaln_nt2Genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAG-GTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctgctgccactccctcccccataatgattcacgtgccaatctttaccagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGCGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtgagtcacctgctcagctcagagtcctgtgcctggatcatgaggctgag Alignment from Pairagon TACCCTCCTCCACTGATCCCCCCACGTGGGGAG-GTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctgctgccactccctcccccataatgattcacgtgccaatctttaccagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGCGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtgagtcacctgctcagctcagagtcctgtgcctggatcatgaggctgag Alignment from Exonerate_protein2genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAG-GTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctgctgccactccctcccccataatgattcacgtgccaatctttaccagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGCGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtgagtcacctgctcagctcagagtcctgtgcctggatcatgaggctgag Alignment from Exonerate_coding2genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAG-GTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctgctgccactccctcccccataatgattcacgtgccaatctttaccagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGCGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtgagtcacctgctcagctcagagtcctgtgcctggatcatgaggctgag Alignment from GeneWise TACCCTCCTCCACTGATCCCCCCACGTGGGGAG-GTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctgctgccactccctcccccataatgattcacgtgccaatctttaccagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGCGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtgagtcacctgctcagctcagagtcctgtgcctggatcatgaggctgag #### Adrbk1_ID480_15 --> 1 - 0 Original Alignment gGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTC-TTCTTACAGAAG actcaacttgaacgatccagagtccaggttcggtatttttctgtattcaggGCTCAGGAGGTAAAAGAAAGTCCCTTCTTTCATTCTCTGGATTGGCAGATGGCCCTTCTTACAGAAGgtaagcatataaccctacagggtgagctgtgtacctcctctgctgccact Alignment from CESAR gGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTC-TTCTTACAGAAG actcaacttgaacgatccagagtccaggttcggtatttttctgtattcaggGCTCAGGAGGTAAAAGAAAGTCCCTTCTTTCATTCTCTGGATTGGCAGATGGCCCTTCTTACAGAAGgtaagcatataaccctacagggtgagctgtgtacctcctctgctgccact Alignment from Spaln_aa2Genome GGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTC-TTCTTACAGAAG actcaacttgaacgatccagagtccaggttcggtatttttctgtattcagGGCTCAGGAGGTAAAAGAAAGTCCCTTCTTTCATTCTCTGGATTGGCAGATGGCCcTTCTTACAGAAGgtaagcatataaccctacagggtgagctgtgtacctcctctgctgccact Alignment from Spaln_nt2Genome GGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTC-TTCTTACAGAAG actcaacttgaacgatccagagtccaggttcggtatttttctgtattcagGGCTCAGGAGGTAAAAGAAAGTCCCTTCTTTCATTCTCTGGATTGGCAGATGGCCCTTCTTACAGAAGgtaagcatataaccctacagggtgagctgtgtacctcctctgctgccact Alignment from Pairagon GGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGT-CTTCTTACAGAAG actcaacttgaacgatccagagtccaggttcggtatttttctgtattcagGGCTCAGGAGGTAAAAGAAAGTCCCTTCTTTCATTCTCTGGATTGGCAGATGGCCCTTCTTACAGAAGgtaagcatataaccctacagggtgagctgtgtacctcctctgctgccact Alignment from Exonerate_protein2genome GGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTC-TTCTTACAGAAG actcaacttgaacgatccagagtccaggttcggtatttttctgtattcagGGCTCAGGAGGTAAAAGAAAGTCCCTTCTTTCATTCTCTGGATTGGCAGATGGCCCTTCTTACAGAAGgtaagcatataaccctacagggtgagctgtgtacctcctctgctgccact Alignment from Exonerate_coding2genome GGCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTC-TTCTTACAGAAG actcaacttgaacgatccagagtccaggttcggtatttttctgtattcagGGCTCAGGAGGTAAAAGAAAGTCCCTTCTTTCATTCTCTGGATTGGCAGATGGCCCTTCTTACAGAAGgtaagcatataaccctacagggtgagctgtgtacctcctctgctgccact Alignment from GeneWise -GCTCAGGAGGTAAAAGAAAGTCCTTTCTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG- actcaacttgaacgatccagagtccaggttcggtatttttctgtattcagGGCTCAGGAGGTAAAAGAAAGTCCCTTCTTTCATTCTCTGGATTGGCAGATGGCCCTTCTTACAGAAGgtaagcatataaccctacagggtgagctgtgtacctcctctgctgccact #### Adrbk1_ID481_14 --> 0 - 2 Original Alignment GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGT-CTGGGC---CGTgg ggtaggctctcttcctagcttctgttgagactctcattgtgtaatcctagGCTGTAGAACTGCCTGATTCCTTCTCCCCTGAACTCCGTTCCCTGTTGGAGGGTTTGTTGCAGAGGGACATCAACCGGAGGTTAGGCTGTCCTGGGCCGCCGGgggtacatatcttgacctccccaccgtgtggtcatactctgtatcttctggg Alignment from CESAR GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGT-CTGGGCCGT---gg ggtaggctctcttcctagcttctgttgagactctcattgtgtaatcctagGCTGTAGAACTGCCTGATTCCTTCTCCCCTGAACTCCGTTCCCTGTTGGAGGGTTTGTTGCAGAGGGACATCAACCGGAGGTTAGGCTGTCCTGGGCCGCCGGgggtacatatcttgacctccccaccgtgtggtcatactctgtatcttctggg Alignment from Spaln_aa2Genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCG ggtaggctctcttcctagcttctgttgagactctcattgtgtaatcctagGCTGTAGAACTGCCTGATTCCTTCTCCCCTGAACTCCGTTCCCTGTTGGAGGGTTTGTTGCAGAGGGACATCAACCGGAGGTTAGGCTGTCCTGGGCCgccgggggtacatatcttgacctccccaccgtgtggtcatactctgtatcttctggg Alignment from Spaln_nt2Genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTC-TGGGCCGT---GG ggtaggctctcttcctagcttctgttgagactctcattgtgtaatcctagGCTGTAGAACTGCCTGATTCCTTCTCCCCTGAACTCCGTTCCCTGTTGGAGGGTTTGTTGCAGAGGGACATCAACCGGAGGTTAGGCTGTCCTGGGCCGCCGGGGgtacatatcttgacctccccaccgtgtggtcatactctgtatcttctggg Alignment from Pairagon GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGG----GCCGTGG ggtaggctctcttcctagcttctgttgagactctcattgtgtaatcctagGCTGTAGAACTGCCTGATTCCTTCTCCCCTGAACTCCGTTCCCTGTTGGAGGGTTTGTTGCAGAGGGACATCAACCGGAGGTTAGGCTGTCCTGGGCCGCCGGGGgtacatatcttgacctccccaccgtgtggtcatactctgtatcttctggg Alignment from Exonerate_protein2genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGTGG ggtaggctctcttcctagcttctgttgagactctcattgtgtaatcctagGCTGTAGAACTGCCTGATTCCTTCTCCCCTGAACTCCGTTCCCTGTTGGAGGGTTTGTTGCAGAGGGACATCAACCGGAGGTTAGGCTGTCCTGGGCCGCCgggggtacatatcttgacctccccaccgtgtggtcatactctgtatcttctggg Alignment from Exonerate_coding2genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGTGG ggtaggctctcttcctagcttctgttgagactctcattgtgtaatcctagGCTGTAGAACTGCCTGATTCCTTCTCCCCTGAACTCCGTTCCCTGTTGGAGGGTTTGTTGCAGAGGGACATCAACCGGAGGTTAGGCTGTCCTGGGCCGCCgggggtacatatcttgacctccccaccgtgtggtcatactctgtatcttctggg Alignment from GeneWise GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGTGGGGCTCAG ggtaggctctcttcctagcttctgttgagactctcattgtgtaatcctagGCTGTAGAACTGCCTGATTCCTTCTCCCCTGAACTCCGTTCCCTGTTGGAGGGTTTGTTGCAGAGGGACATCAACCGGAGGTTAGGCTGTCCTGGGCCG---CCGGGGgtacatatcttgacctccccaccgtgtggtcatactctgtatcttctggg #### Adrbk1_ID485_10 --> 2 - 0 Original Alignment CATGAACg gtGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTAC-AGGGACCTGAAG TATGAACggtcggttagcttaggggatgcatttttgtctttctcctttaggcGGGGACCTGCACTACCACTTATCACAGCATGGAGTCTTCTCGGAAGCCGACATGCGTTTCTATGCTGCTGAGATCATCCTAGGCCTTGAACACATGCACAATCATTTTGTAGTTTTCCAGGGACTTGAAGgtaggtggcagctgatagggcactcctcctctaccctccccctgctccac Alignment from CESAR CATGAACg gtGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTAC-AGGGACCTGAAG TATGAACggtacgctagcttaggggatgcatttttgtctttctcctttaggcGGGGACCTGCACTACCACTTATCACAGCATGGAGTCTTCTCGGAAGCCGACATGCGTTTCTATGCTGCTGAGATCATCCTAGGCCTTGAACACATGCACAATCATTTTGTAGTTTTCCAGGGACTTGAAGgtaggtggcagctgatagggcactcctcctctaccctccccctgctccac Alignment from Spaln_aa2Genome CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG- TATGAACGgtcggttagcttaggggatgcatttttgtctttctcctttagGCGGGGACCTGCACTACCACTTATCACAGCATGGAGTCTTCTCGGAAGCCGACATGCGTTTCTATGCTGCTGAGATCATCCTAGGCCTTGAACACATGCACAATCATTTTGTAGTTTTCCAGGGACTTGAAGgtaggtggcagctgatagggcactcctcctctaccctccccctgctccac Alignment from Spaln_nt2Genome CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTAC-AGGGACCTGAAG TATGAACGgtcggttagcttaggggatgcatttttgtctttctcctttagGCGGGGACCTGCACTACCACTTATCACAGCATGGAGTCTTCTCGGAAGCCGACATGCGTTTCTATGCTGCTGAGATCATCCTAGGCCTTGAACACATGCACAATCATTTTGTAGTTTTCCAGGGACTTGAAGgtaggtggcagctgatagggcactcctcctctaccctccccctgctccac Alignment from Pairagon CATGAACGGT------------------------------------------GGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAG-TCTACAGGGACCTGAAG TATGAACGGTCGGTTAGCTTAGGGGATGCATTTTTGTCTTTCTCCTTTAGGCGGGGACCTGCACTACCACTTATCACAGCATGGAGTCTTCTCGGAAGCCGACATGCGTTTCTATGCTGCTGAGATCATCCTAGGCCTTGAACACATGCACAATCATTTTGTAGTTTTCCAGGGACTTGAAGgtaggtggcagctgatagggcactcctcctctaccctccccctgctccac Alignment from Exonerate_protein2genome CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTAC-AGGGACCTGAAG TATGAACGgtcggttagcttaggggatgcatttttgtctttctcctttagGCGGGGACCTGCACTACCACTTATCACAGCATGGAGTCTTCTCGGAAGCCGACATGCGTTTCTATGCTGCTGAGATCATCCTAGGCCTTGAACACATGCACAATCATTTTGTAGTTTTCCAGGGACTTGAAGgtaggtggcagctgatagggcactcctcctctaccctccccctgctccac Alignment from Exonerate_coding2genome CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTAC-AGGGACCTGAAG TATGAACGgtcggttagcttaggggatgcatttttgtctttctcctttagGCGGGGACCTGCACTACCACTTATCACAGCATGGAGTCTTCTCGGAAGCCGACATGCGTTTCTATGCTGCTGAGATCATCCTAGGCCTTGAACACATGCACAATCATTTTGTAGTTTTCCAGGGACTTGAAGgtaggtggcagctgatagggcactcctcctctaccctccccctgctccac Alignment from GeneWise CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAGC TATGAACGgtcggttagcttaggggatgcatttttgtctttctcctttagGCGGGGACCTGCACTACCACTTATCACAGCATGGAGTCTTCTCGGAAGCCGACATGCGTTTCTATGCTGCTGAGATCATCCTAGGCCTTGAACACATGCACAATCATTTTGTAGTTTTCCAGGGACTTGAAGgtaggtggcagctgatagggcactcctcctctaccctccccctgctccac #### Adrbk1_ID486_9 --> 0 - 1 Original Alignment GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCAC-ACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACg gtGGGGAC ccagccttggcctgccttccataactcatgttatgtcctcccctccccagGACTGTCCCTTCACTGTGTGCATGTCATATGCGTTCCACCACGCCAGATAAGCTAAGCTTCATCCTGGACCTTATGAACggtacgctagcttaggggatgcccctttcttttgcttattaaggcGGGGAC Alignment from CESAR GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCAC-ACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACg gtGGGGAC ccagccttggcctgccttccataactcatgttatgtcctcccctccccagGACTGTCCCTTCACTGTGTGCATGTCATATGCGTTCCACCACGCCAGATAAGCTAAGCTTCATCCTGGACCTTATGAACggtacgctagcttaggggatgcatttttgtctttctcctttaggcGGGGAC Alignment from Spaln_aa2Genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCAC-ACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC ccagccttggcctgccttccataactcatgttatgtcctcccctccccagGACTGTCCCTTCACTGTGTGCATGTCATATGCGTTCCACcACGCCAGATAAGCTAAGCTTCATCCTGGACCTTATGAACGgtacgctagcttaggggatgcccctttcttttgcttattaagGCGGGGAC Alignment from Spaln_nt2Genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCA-CACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC ccagccttggcctgccttccataactcatgttatgtcctcccctccccagGACTGTCCCTTCACTGTGTGCATGTCATATGCGTTCCACCACGCCAGATAAGCTAAGCTTCATCCTGGACCTTATGAACGgtacgctagcttaggggatgcccctttcttttgcttattaagGCGGGGAC Alignment from Pairagon GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCA-CACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACGGT------------------------------------------GGGGAC ccagccttggcctgccttccataactcatgttatgtcctcccctccccagGACTGTCCCTTCACTGTGTGCATGTCATATGCGTTCCACCACGCCAGATAAGCTAAGCTTCATCCTGGACCTTATGAACGGTACGCTAGCTTAGGGGATGCCCCTTTCTTTTGCTTATTAAGGCGGGGAC Alignment from Exonerate_protein2genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCAC-ACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC ccagccttggcctgccttccataactcatgttatgtcctcccctccccagGACTGTCCCTTCACTGTGTGCATGTCATATGCGTTCCACCACGCCAGATAAGCTAAGCTTCATCCTGGACCTTATGAACGgtacgctagcttaggggatgcccctttcttttgcttattaagGCGGGGAC Alignment from Exonerate_coding2genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCAC-ACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC ccagccttggcctgccttccataactcatgttatgtcctcccctccccagGACTGTCCCTTCACTGTGTGCATGTCATATGCGTTCCACCACGCCAGATAAGCTAAGCTTCATCCTGGACCTTATGAACGgtacgctagcttaggggatgcccctttcttttgcttattaagGCGGGGAC Alignment from GeneWise GACTGCCCCTTCATCGTGTGCATGTCATATGCATTCCAC-ACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC ccagccttggcctgccttccataactcatgttatgtcctcccctccccagGACTGTCCCTTCACTGTGTGCATGTCATATGCGTTCCACCACGCCAGATAAGCTAAGCTTCATCCTGGACCTTATGAACGgtacgctagcttaggggatgcccctttcttttgcttattaagGCGGGGAC #### Adrbk1_ID487_8 --> 1 - 0 Original Alignment gTACGCCATGAAGTGTCTG---GACAAGAAACGCATCAAGATGAAGCAGGGAGAG-ACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG tctgccttgcagggcttgcttatgctgcgctttgcctgctattgtcctaggTATGCCATGAGGTGTCTGGACAACAAGAAACGCATCAAGATGAAACAGGGAGAGCACCCTGGCTCTGAACAAGCGGATTATGCTTTCACTCGTGAGCACTGGGgtaaggtaagtggccaagtggacctccattttgacctctcaccccagcct Alignment from CESAR gTACGCCATGAAGTGTCTGGAC---AAGAAACGCATCAAGATGAAGCAGGGAGAG-ACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG tctgccttgcagggcttgcttatgctgcgctttgcctgctattgtcctaggTATGCCATGAGGTGTCTGGACAACAAGAAACGCATCAAGATGAAACAGGGAGAGCACCCTGGCTCTGAACAAGCGGATTATGCTTTCACTCGTGAGCACTGGGgtaaggtaagtggccaagtggacctccattttgacctctcaccccagcct Alignment from Spaln_aa2Genome GTACGCCATGAAGTGTCTGGAC---AAGAAACGCATCAAGATGAAGCAGGGAGAG-ACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG tctgccttgcagggcttgcttatgctgcgctttgcctgctattgtcctagGTATGCCATGAGGTGTCTGGACAACAAGAAACGCATCAAGATGAAACAGGGAGAGcACCCTGGCTCTGAACAAGCGGATTATGCTTTCACTCGTGAGCACTGGGgtaaggtaagtggccaagtggacctccattttgacctctcaccccagcct Alignment from Spaln_nt2Genome GTACGCCATGAAGTGTCTGG---ACAAGAAACGCATCAAGATGAAGCAGGGAGAG-ACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG tctgccttgcagggcttgcttatgctgcgctttgcctgctattgtcctagGTATGCCATGAGGTGTCTGGACAACAAGAAACGCATCAAGATGAAACAGGGAGAGCACCCTGGCTCTGAACAAGCGGATTATGCTTTCACTCGTGAGCACTGGGgtaaggtaagtggccaagtggacctccattttgacctctcaccccagcct Alignment from Pairagon GTACGCCATGAAGTGTCTGG---ACAAGAAACGCATCAAGATGAAGCAGGGAGAG-ACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG tctgccttgcagggcttgcttatgctgcgctttgcctgctattgtcctagGTATGCCATGAGGTGTCTGGACAACAAGAAACGCATCAAGATGAAACAGGGAGAGCACCCTGGCTCTGAACAAGCGGATTATGCTTTCACTCGTGAGCACTGGGgtaaggtaagtggccaagtggacctccattttgacctctcaccccagcct Alignment from Exonerate_protein2genome GTACGCCATGAAGTGTCTGGAC---AAGAAACGCATCAAGATGAAGCAGGGAGAG-ACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG tctgccttgcagggcttgcttatgctgcgctttgcctgctattgtcctagGTATGCCATGAGGTGTCTGGACAACAAGAAACGCATCAAGATGAAACAGGGAGAGCACCCTGGCTCTGAACAAGCGGATTATGCTTTCACTCGTGAGCACTGGGgtaaggtaagtggccaagtggacctccattttgacctctcaccccagcct Alignment from Exonerate_coding2genome GTACGCCATGAAGTGTCTGGAC---AAGAAACGCATCAAGATGAAGCAGGGAGAG-ACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG tctgccttgcagggcttgcttatgctgcgctttgcctgctattgtcctagGTATGCCATGAGGTGTCTGGACAACAAGAAACGCATCAAGATGAAACAGGGAGAGCACCCTGGCTCTGAACAAGCGGATTATGCTTTCACTCGTGAGCACTGGGgtaaggtaagtggccaagtggacctccattttgacctctcaccccagcct Alignment from GeneWise GTACGCCATGAAGTGTCTGGAC---AAGAAACGCATCAAGATGAAGCAGGGAGAG-ACCCTGGCTCTGAACGAGCGGATCATGCTTTCCCTCGTCAGCACCGGG tctgccttgcagggcttgcttatgctgcgctttgcctgctattgtcctagGTATGCCATGAGGTGTCTGGACAACAAGAAACGCATCAAGATGAAACAGGGAGAGCACCCTGGCTCTGAACAAGCGGATTATGCTTTCACTCGTGAGCACTGGGgtaaggtaagtggccaagtggacctccattttgacctctcaccccagcct #### Adrbk1_ID488_7 --> 0 - 2 Original Alignment CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGG-AAAGCAGACACAGGCAAGat cctctgttgttgggctgtgaaaacagtgattcttgtgtcgtttcctgtagCTGACCATGAATGATTTTAGTGTACATCGAATCATCGGACGTGGGGGCTTCGGTGAGGTTTATGGGTGCCGTCAAGGCGGATATAGGCAAGatgtaggtactggactgggtggggtggccatggaaggagtcaggctttgtat Alignment from CESAR CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGG-AAAGCAGACACAGGCAAGat cctctgttgttgggctgtgaaaacagtgattcttgtgtcgtttcctgtagCTGACCATGAATGATTTTAGTGTACATCGAATCATCGGACGTGGGGGCTTCGGTGAGGTTTATGGGTGCCGTCAAGGCGGATATAGGCAAGatgtaggtactggactgggtggggtggccatggaaggagtcaggctttgtat Alignment from Spaln_aa2Genome CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGG-AAAGCAGACACAGGCAAGAT cctctgttgttgggctgtgaaaacagtgattcttgtgtcgtttcctgtagCTGACCATGAATGATTTTAGTGTACATCGAATCATCGGACGTGGGGGCTTCGGTGAGGTTTATGGGTGCCGTcAAGGCGGATATAGGCAAGATgtaggtactggactgggtggggtggccatggaaggagtcaggctttgtat Alignment from Spaln_nt2Genome CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAG-CAGACACAGGCAAGAT cctctgttgttgggctgtgaaaacagtgattcttgtgtcgtttcctgtagCTGACCATGAATGATTTTAGTGTACATCGAATCATCGGACGTGGGGGCTTCGGTGAGGTTTATGGGTGCCGTCAAGGCGGATATAGGCAAGATgtaggtactggactgggtggggtggccatggaaggagtcaggctttgtat Alignment from Pairagon CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCG-GAAAGCAGACACAGGCAAGAT cctctgttgttgggctgtgaaaacagtgattcttgtgtcgtttcctgtagCTGACCATGAATGATTTTAGTGTACATCGAATCATCGGACGTGGGGGCTTCGGTGAGGTTTATGGGTGCCGTCAAGGCGGATATAGGCAAGATgtaggtactggactgggtggggtggccatggaaggagtcaggctttgtat Alignment from Exonerate_protein2genome CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGG-AAAGCAGACACAGGCAAGAT cctctgttgttgggctgtgaaaacagtgattcttgtgtcgtttcctgtagCTGACCATGAATGATTTTAGTGTACATCGAATCATCGGACGTGGGGGCTTCGGTGAGGTTTATGGGTGCCGTCAAGGCGGATATAGGCAAGATgtaggtactggactgggtggggtggccatggaaggagtcaggctttgtat Alignment from Exonerate_coding2genome CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGG-AAAGCAGACACAGGCAAGAT cctctgttgttgggctgtgaaaacagtgattcttgtgtcgtttcctgtagCTGACCATGAATGATTTTAGTGTACATCGAATCATCGGACGTGGGGGCTTCGGTGAGGTTTATGGGTGCCGTCAAGGCGGATATAGGCAAGATgtaggtactggactgggtggggtggccatggaaggagtcaggctttgtat Alignment from GeneWise CTGACCATGAATGACTTCAGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGG-AAAGCAGACACAGGCAAGAT cctctgttgttgggctgtgaaaacagtgattcttgtgtcgtttcctgtagCTGACCATGAATGATTTTAGTGTACATCGAATCATCGGACGTGGGGGCTTCGGTGAGGTTTATGGGTGCCGTCAAGGCGGATATAGGCAAGATgtaggtactggactgggtggggtggccatggaaggagtcaggctttgtat #### Adrbk1_ID490_5 --> 0 - 2 Original Alignment CCATACATTGAGGAGATT-TGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGag agcctgaggcttgccagaccgaatcaccttatactgcatttctttggcagCCATACATTGAGGAGATTCTGTCAGAAACTCCGAAGGGATTTATTCCAGAAGTTCATAGAGaggtagtcaggcgaagttgacttctctgaccctgcacagccaagtgtgtcgg Alignment from CESAR CCATACATTGAGGAGATT-TGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGag agcctgaggcttgccagaccgaatcaccttatactgcatttctttggcagCCATACATTGAGGAGATTCTGTCAGAAACTCCGAAGGGATTTATTCCAGAAGTTCATAGAGaggtagtcaggcgaagttgacttctctgaccctgcacagccaagtgtgtcgg Alignment from Spaln_aa2Genome CCATACATTGAGGAGATT-TGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG agcctgaggcttgccagaccgaatcaccttatactgcatttctttggcagCCATACATTGAGGAGATTcTGTCAGAAACTCCGAAGGGATTTATTCCAGAAGTTCATAGAGAGgtagtcaggcgaagttgacttctctgaccctgcacagccaagtgtgtcgg Alignment from Spaln_nt2Genome CCATACATTGAGGAGATT-TGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG agcctgaggcttgccagaccgaatcaccttatactgcatttctttggcagCCATACATTGAGGAGATTCTGTCAGAAACTCCGAAGGGATTTATTCCAGAAGTTCATAGAGAGgtagtcaggcgaagttgacttctctgaccctgcacagccaagtgtgtcgg Alignment from Pairagon CCATACATTGAGGAGATT-TGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG agcctgaggcttgccagaccgaatcaccttatactgcatttctttggcagCCATACATTGAGGAGATTCTGTCAGAAACTCCGAAGGGATTTATTCCAGAAGTTCATAGAGAGgtagtcaggcgaagttgacttctctgaccctgcacagccaagtgtgtcgg Alignment from Exonerate_protein2genome CCATACATTGAGGAGATT-TGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG agcctgaggcttgccagaccgaatcaccttatactgcatttctttggcagCCATACATTGAGGAGATTCTGTCAGAAACTCCGAAGGGATTTATTCCAGAAGTTCATAGAGAGgtagtcaggcgaagttgacttctctgaccctgcacagccaagtgtgtcgg Alignment from Exonerate_coding2genome CCATACATTGAGGAGATT-TGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG agcctgaggcttgccagaccgaatcaccttatactgcatttctttggcagCCATACATTGAGGAGATTCTGTCAGAAACTCCGAAGGGATTTATTCCAGAAGTTCATAGAGAGgtagtcaggcgaagttgacttctctgaccctgcacagccaagtgtgtcgg Alignment from GeneWise GGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG agcctgaggcttgccagaccgaatcaccttatactgcatttctttggcagccatacattgagGAGATTCTGTCAGAAACTCCGAAGGGATTTATTCCAGAAGTTCATAGAGAGgtagtcaggcgaagttgacttctctgaccctgcacagccaagtgtgtcgg #### Adrbk1_ID492_3 --> 0 - 0 Original Alignment ATCAAGAAATATGAGAAGCTG-GAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacaaaaagttatccttcttctcattggaatccagATTAAGAAATATGAAAAGCTGCGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTCGACTCCTACATTATGAAGGAACTCCTGGCTTGCTCACATgtgagggctgaatctatctgttgatcctagatatgtggggttaaaggaca Alignment from CESAR ATCAAGAAATATGAGAAGCTG-GAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacaaaaagttatccttcttctcattggaatccagATTAAGAAATATGAAAAGCTGCGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTCGACTCCTACATTATGAAGGAACTCCTGGCTTGCTCACATgtgagggctgaatctatctgttgatcctagatatgtggggttaaaggaca Alignment from Spaln_aa2Genome ATCAAGAAATATGAGAAGCTG-GAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacaaaaagttatccttcttctcattggaatccagATTAAGAAATATGAAAAGCTGcGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTCGACTCCTACATTATGAAGGAACTCCTGGCTTGCTCACATgtgagggctgaatctatctgttgatcctagatatgtggggttaaaggaca Alignment from Spaln_nt2Genome ATCAAGAAATATGAGAAGCTG-GAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacaaaaagttatccttcttctcattggaatccagATTAAGAAATATGAAAAGCTGCGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTCGACTCCTACATTATGAAGGAACTCCTGGCTTGCTCACATgtgagggctgaatctatctgttgatcctagatatgtggggttaaaggaca Alignment from Pairagon ATCAAGAAATATGAGAAGCTG-GAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacaaaaagttatccttcttctcattggaatccagATTAAGAAATATGAAAAGCTGCGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTCGACTCCTACATTATGAAGGAACTCCTGGCTTGCTCACATgtgagggctgaatctatctgttgatcctagatatgtggggttaaaggaca Alignment from Exonerate_protein2genome ATCAAGAAATATGAGAAGCTG-GAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacaaaaagttatccttcttctcattggaatccagATTAAGAAATATGAAAAGCTGCGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTCGACTCCTACATTATGAAGGAACTCCTGGCTTGCTCACATgtgagggctgaatctatctgttgatcctagatatgtggggttaaaggaca Alignment from Exonerate_coding2genome ATCAAGAAATATGAGAAGCTG-GAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacaaaaagttatccttcttctcattggaatccagATTAAGAAATATGAAAAGCTGCGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTCGACTCCTACATTATGAAGGAACTCCTGGCTTGCTCACATgtgagggctgaatctatctgttgatcctagatatgtggggttaaaggaca Alignment from GeneWise GAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT gcttcatgctgtggccacaaaaagttatccttcttctcattggaatccagattaagAAATATGAAAAGCTGCGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATCTTCGACTCCTACATTATGAAGGAACTCCTGGCTTGCTCACATgtgagggctgaatctatctgttgatcctagatatgtggggttaaaggaca #### Afap1l2_ID12247_16 --> 0 - 1 Original Alignment AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGC-CCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAg tcctcaccaggccctgcagccagaaagtgtgactcattttgatctctcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCTACCCCACGAAGCACCATGGTTAAGTTACAGGCTGAACAACAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACCATGGCTTCCGCCCCCATTTCTGCCAGCCCCACCTGTGAAAGAGAAGCTAAGAGTTACCAGTGCAggtagggggactaaagccgcacttagcacttgaaacctaacaagttagccc Alignment from CESAR AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGC-CCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAg tcctcaccaggccctgcagccagaaagtgtgactcattttgatctctcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCTACCCCACGAAGCACCATGGTTAAGTTACAGGCTGAACAACAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACCATGGCTTCCGCCCCCATTTCTGCCAGCCCCACCTGTGAAAGAGAAGCTAAGAGTTACCAGTGCAggtagggggactaaagccgcacttagcacttgaaacctaacaagttagccc Alignment from Spaln_aa2Genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCA-CCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG tcctcaccaggccctgcagccagaaagtgtgactcattttgatctctcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCTACCCCACGAAGCACCATGGTTAAGTTACAGGCTGAACAACAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACCATGGCTTCCGCCCCCATTTCTGCCAGCCCCaCCTGTGAAAGAGAAGCTAAGAGTTACCAGTGCAGgtagggggactaaagccgcacttagcacttgaaacctaacaagttagccc Alignment from Spaln_nt2Genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCC-CACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG tcctcaccaggccctgcagccagaaagtgtgactcattttgatctctcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCTACCCCACGAAGCACCATGGTTAAGTTACAGGCTGAACAACAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACCATGGCTTCCGCCCCCATTTCTGCCAGCCCCACCTGTGAAAGAGAAGCTAAGAGTTACCAGTGCAGgtagggggactaaagccgcacttagcacttgaaacctaacaagttagccc Alignment from Pairagon AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAG-CCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG tcctcaccaggccctgcagccagaaagtgtgactcattttgatctctcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCTACCCCACGAAGCACCATGGTTAAGTTACAGGCTGAACAACAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACCATGGCTTCCGCCCCCATTTCTGCCAGCCCCACCTGTGAAAGAGAAGCTAAGAGTTACCAGTGCAGgtagggggactaaagccgcacttagcacttgaaacctaacaagttagccc Alignment from Exonerate_protein2genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGC-CCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG tcctcaccaggccctgcagccagaaagtgtgactcattttgatctctcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCTACCCCACGAAGCACCATGGTTAAGTTACAGGCTGAACAACAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACCATGGCTTCCGCCCCCATTTCTGCCAGCCCCACCTGTGAAAGAGAAGCTAAGAGTTACCAGTGCAGgtagggggactaaagccgcacttagcacttgaaacctaacaagttagccc Alignment from Exonerate_coding2genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGC-CCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG tcctcaccaggccctgcagccagaaagtgtgactcattttgatctctcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCTACCCCACGAAGCACCATGGTTAAGTTACAGGCTGAACAACAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACCATGGCTTCCGCCCCCATTTCTGCCAGCCCCACCTGTGAAAGAGAAGCTAAGAGTTACCAGTGCAGgtagggggactaaagccgcacttagcacttgaaacctaacaagttagccc Alignment from GeneWise AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCC-AGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG tcctcaccaggccctgcagccagaaagtgtgactcattttgatctctcagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTGAACCTACCCCACGAAGCACCATGGTTAAGTTACAGGCTGAACAACAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACCATGGCTTCCGCCCCCATTTCTGCCAGCCCCACCTGTGAAAGAGAAGCTAAGAGTTACCAGTGCAGgtagggggactaaagccgcacttagcacttgaaacctaacaagttagccc #### Aip_ID331_4 --> 0 - 0 Original Alignment GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAG-GTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gacaggtacccataggcaggaactggttcctctctgaactgttcccaaagGTAGAGAGTCCTGGTACCTATCAACAGGACCCATGGGCAATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTATCGTGAAAGCCAGCGTGAAGGAGGCTGCTGCCAAGTACTATGATGCCATCGCCTGCCTCAAGAATCTGCAAATGAAGgtaagttccagggccacagtgggagggacatatggggcacgcatggctgc Alignment from CESAR GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAG-GTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gacaggtacccataggcaggaactggttcctctctgaactgttcccaaagGTAGAGAGTCCTGGTACCTATCAACAGGACCCATGGGCAATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTATCGTGAAAGCCAGCGTGAAGGAGGCTGCTGCCAAGTACTATGATGCCATCGCCTGCCTCAAGAATCTGCAAATGAAGgtaagttccagggccacagtgggagggacatatggggcacgcatggctgc Alignment from Spaln_aa2Genome GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAG-GTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gacaggtacccataggcaggaactggttcctctctgaactgttcccaaagGTAGAGAGTCCTGGTACCTATCAACAGGACCCATGGGCAATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTATCGTGAAAGCCAGcGTGAAGGAGGCTGCTGCCAAGTACTATGATGCCATCGCCTGCCTCAAGAATCTGCAAATGAAGgtaagttccagggccacagtgggagggacatatggggcacgcatggctgc Alignment from Spaln_nt2Genome GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAG-GTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gacaggtacccataggcaggaactggttcctctctgaactgttcccaaagGTAGAGAGTCCTGGTACCTATCAACAGGACCCATGGGCAATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTATCGTGAAAGCCAGCGTGAAGGAGGCTGCTGCCAAGTACTATGATGCCATCGCCTGCCTCAAGAATCTGCAAATGAAGgtaagttccagggccacagtgggagggacatatggggcacgcatggctgc Alignment from Pairagon GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAG-GTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gacaggtacccataggcaggaactggttcctctctgaactgttcccaaagGTAGAGAGTCCTGGTACCTATCAACAGGACCCATGGGCAATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTATCGTGAAAGCCAGCGTGAAGGAGGCTGCTGCCAAGTACTATGATGCCATCGCCTGCCTCAAGAATCTGCAAATGAAGgtaagttccagggccacagtgggagggacatatggggcacgcatggctgc Alignment from Exonerate_protein2genome GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAG-GTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gacaggtacccataggcaggaactggttcctctctgaactgttcccaaagGTAGAGAGTCCTGGTACCTATCAACAGGACCCATGGGCAATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTATCGTGAAAGCCAGCGTGAAGGAGGCTGCTGCCAAGTACTATGATGCCATCGCCTGCCTCAAGAATCTGCAAATGAAGgtaagttccagggccacagtgggagggacatatggggcacgcatggctgc Alignment from Exonerate_coding2genome GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAG-GTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gacaggtacccataggcaggaactggttcctctctgaactgttcccaaagGTAGAGAGTCCTGGTACCTATCAACAGGACCCATGGGCAATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTATCGTGAAAGCCAGCGTGAAGGAGGCTGCTGCCAAGTACTATGATGCCATCGCCTGCCTCAAGAATCTGCAAATGAAGgtaagttccagggccacagtgggagggacatatggggcacgcatggctgc Alignment from GeneWise GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTACCGTGAGGGCCAG-GTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gacaggtacccataggcaggaactggttcctctctgaactgttcccaaagGTAGAGAGTCCTGGTACCTATCAACAGGACCCATGGGCAATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAACCGGTTGTATCGTGAAAGCCAGCGTGAAGGAGGCTGCTGCCAAGTACTATGATGCCATCGCCTGCCTCAAGAATCTGCAAATGAAGgtaagttccagggccacagtgggagggacatatggggcacgcatggctgc #### Aldh3b1_ID204_3 --> 0 - 1 Original Alignment GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTG-CCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAg aaccatattgcttgcctatgcatcaggctgactgctccttgttctttcagGCTACACAGTTAGATGCAGCCTTCATCAGGAAGGAGCCCTTTGGTCTGGTGCTAATCATCGTGCCCTTGGAATTATCCCATTAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCCGCAggtgagtagtttttaaccttctgacagccctccacatagggctaactgaga Alignment from CESAR GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCC-TGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAg aaccatattgcttgcctatgcatcaggctgactgctccttgttctttcagGCTACACAGTTAGATGCAGCCTTCATCAGGAAGGAGCCCTTTGGTCTGGTGCTAATCATCGTGCCCTTGGAATTATCCCATTAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCCGCAggtgagtagtttttaaccttctgacagccctccacatagggctaactgaga Alignment from Spaln_aa2Genome GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTG-CCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG aaccatattgcttgcctatgcatcaggctgactgctccttgttctttcagGCTACACAGTTAGATGCAGCCTTCATCAGGAAGGAGCCCTTTGGTCTGGTGCTAATCATCGTGcCCTTGGAATTATCCCATTAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCCGCAGgtgagtagtttttaaccttctgacagccctccacatagggctaactgaga Alignment from Spaln_nt2Genome GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCC-TGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG aaccatattgcttgcctatgcatcaggctgactgctccttgttctttcagGCTACACAGTTAGATGCAGCCTTCATCAGGAAGGAGCCCTTTGGTCTGGTGCTAATCATCGTGCCCTTGGAATTATCCCATTAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCCGCAGgtgagtagtttttaaccttctgacagccctccacatagggctaactgaga Alignment from Pairagon GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCC-TGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG aaccatattgcttgcctatgcatcaggctgactgctccttgttctttcagGCTACACAGTTAGATGCAGCCTTCATCAGGAAGGAGCCCTTTGGTCTGGTGCTAATCATCGTGCCCTTGGAATTATCCCATTAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCCGCAGgtgagtagtttttaaccttctgacagccctccacatagggctaactgaga Alignment from Exonerate_protein2genome GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTG-CCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG aaccatattgcttgcctatgcatcaggctgactgctccttgttctttcagGCTACACAGTTAGATGCAGCCTTCATCAGGAAGGAGCCCTTTGGTCTGGTGCTAATCATCGTGCCCTTGGAATTATCCCATTAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCCGCAGgtgagtagtttttaaccttctgacagccctccacatagggctaactgaga Alignment from Exonerate_coding2genome GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTG-CCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG aaccatattgcttgcctatgcatcaggctgactgctccttgttctttcagGCTACACAGTTAGATGCAGCCTTCATCAGGAAGGAGCCCTTTGGTCTGGTGCTAATCATCGTGCCCTTGGAATTATCCCATTAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCCGCAGgtgagtagtttttaaccttctgacagccctccacatagggctaactgaga Alignment from GeneWise GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATC-GTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG aaccatattgcttgcctatgcatcaggctgactgctccttgttctttcagGCTACACAGTTAGATGCAGCCTTCATCAGGAAGGAGCCCTTTGGTCTGGTGCTAATCATCGTGCCCTTGGAATTATCCCATTAACTTGACACTTGTGCCACTGGTGGGGGCTGTAGCCGCAGgtgagtagtttttaaccttctgacagccctccacatagggctaactgaga #### Aldh3b2_ID237_3 --> 0 - 0 Original Alignment TCAGGCTTCGAGTCA-GACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG gtgatgattaggttcagcctagcctcaagtctgatttttctcacctacagTCAGGCTTTGAGTCACGACATGAGTGAGATCTTCCTGTGTGAGAATGAGGTGGATTTGGCCCTTAAGAACCTGCAGACGTGGATGAAGGATGAACCTGTGTCCACAAATTTGgtaagacctgtcagcatactgaagtgtctgtgagcggccagccccaaatc Alignment from CESAR TCAGGCTTCGAGTCA-GACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG gtgatgattaggttcagcctagcctcaagtctgatttttctcacctacagTCAGGCTTTGAGTCACGACATGAGTGAGATCTTCCTGTGTGAGAATGAGGTGGATTTGGCCCTTAAGAACCTGCAGACGTGGATGAAGGATGAACCTGTGTCCACAAATTTGgtaagacctgtcagcatactgaagtgtctgtgagcggccagccccaaatc Alignment from Spaln_aa2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG gtgatgattaggttcagcctagcctcaagtctgatttttctcacctacagtcagGCT---TTGAGTCACGACATGAGTGAGATCTTCCTGTGTGAGAATGAGGTGGATTTGGCCCTTAAGAACCTGCAGACGTGGATGAAGGATGAACCTGTGTCCACAAATTTGgtaagacctgtcagcatactgaagtgtctgtgagcggccagccccaaatc Alignment from Spaln_nt2Genome TCAGGCTTCGAGTCA-GACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG gtgatgattaggttcagcctagcctcaagtctgatttttctcacctacagTCAGGCTTTGAGTCACGACATGAGTGAGATCTTCCTGTGTGAGAATGAGGTGGATTTGGCCCTTAAGAACCTGCAGACGTGGATGAAGGATGAACCTGTGTCCACAAATTTGgtaagacctgtcagcatactgaagtgtctgtgagcggccagccccaaatc Alignment from Pairagon TCAGGCTTCGAGTCA-GACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG gtgatgattaggttcagcctagcctcaagtctgatttttctcacctacagTCAGGCTTTGAGTCACGACATGAGTGAGATCTTCCTGTGTGAGAATGAGGTGGATTTGGCCCTTAAGAACCTGCAGACGTGGATGAAGGATGAACCTGTGTCCACAAATTTGgtaagacctgtcagcatactgaagtgtctgtgagcggccagccccaaatc Alignment from Exonerate_protein2genome TCAGGCTTCGAGTCA-GACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG gtgatgattaggttcagcctagcctcaagtctgatttttctcacctacagTCAGGCTTTGAGTCACGACATGAGTGAGATCTTCCTGTGTGAGAATGAGGTGGATTTGGCCCTTAAGAACCTGCAGACGTGGATGAAGGATGAACCTGTGTCCACAAATTTGgtaagacctgtcagcatactgaagtgtctgtgagcggccagccccaaatc Alignment from Exonerate_coding2genome TCAGGCTTCGAGTCA-GACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG gtgatgattaggttcagcctagcctcaagtctgatttttctcacctacagTCAGGCTTTGAGTCACGACATGAGTGAGATCTTCCTGTGTGAGAATGAGGTGGATTTGGCCCTTAAGAACCTGCAGACGTGGATGAAGGATGAACCTGTGTCCACAAATTTGgtaagacctgtcagcatactgaagtgtctgtgagcggccagccccaaatc Alignment from GeneWise TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG gtgatgattaggttcagcctagcctcaagtctgatttttctcacctacagtcagGCT---TTGAGTCACGACATGAGTGAGATCTTCCTGTGTGAGAATGAGGTGGATTTGGCCCTTAAGAACCTGCAGACGTGGATGAAGGATGAACCTGTGTCCACAAATTTGgtaagacctgtcagcatactgaagtgtctgtgagcggccagccccaaatc #### Aldh3b2_ID238_4 --> 0 - 1 Original Alignment CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTT-ATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg ccattcatctgactcttcatctaccactttggctctctctaactcctcagCTCACCAAGCTTAGCTCGGCCTTCATCCGGAAAGAGCCCTTTGGTCTTGTGCTTCATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAggtaagaggggttttgagcccacccgttctgatgagagttccctaagaagg Alignment from CESAR CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTT-ATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg ccattcatctgactcttcatctaccactttggctctctctaactcctcagCTCACCAAGCTTAGCTCGGCCTTCATCCGGAAAGAGCCCTTTGGTCTTGTGCTTCATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAggtaagaggggttttgagcccacccgttctgatgagagttccctaagaagg Alignment from Spaln_aa2Genome CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTT-ATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ccattcatctgactcttcatctaccactttggctctctctaactcctcagCTCACCAAGCTTAGCTCGGCCTTCATCCGGAAAGAGCCCTTTGGTCTTGTGCTTcATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAGgtaagaggggttttgagcccacccgttctgatgagagttccctaagaagg Alignment from Spaln_nt2Genome CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTT-ATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ccattcatctgactcttcatctaccactttggctctctctaactcctcagCTCACCAAGCTTAGCTCGGCCTTCATCCGGAAAGAGCCCTTTGGTCTTGTGCTTCATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAGgtaagaggggttttgagcccacccgttctgatgagagttccctaagaagg Alignment from Pairagon CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTT-ATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ccattcatctgactcttcatctaccactttggctctctctaactcctcagCTCACCAAGCTTAGCTCGGCCTTCATCCGGAAAGAGCCCTTTGGTCTTGTGCTTCATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAGgtaagaggggttttgagcccacccgttctgatgagagttccctaagaagg Alignment from Exonerate_protein2genome CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTT-ATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ccattcatctgactcttcatctaccactttggctctctctaactcctcagCTCACCAAGCTTAGCTCGGCCTTCATCCGGAAAGAGCCCTTTGGTCTTGTGCTTCATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAGgtaagaggggttttgagcccacccgttctgatgagagttccctaagaagg Alignment from Exonerate_coding2genome CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTT-ATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAGG ccattcatctgactcttcatctaccactttggctctctctaactcctcagCTCACCAAGCTTAGCTCGGCCTTCATCCGGAAAGAGCCCTTTGGTCTTGTGCTTCATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCA-Ggtaagaggggttttgagcccacccgttctgatgagagttccctaagaagg Alignment from GeneWise CTCACCAAGCTGAGCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTG-CTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ccattcatctgactcttcatctaccactttggctctctctaactcctcagCTCACCAAGCTTAGCTCGGCCTTCATCCGGAAAGAGCCCTTTGGTCTTGTGCTTCATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAGgtaagaggggttttgagcccacccgttctgatgagagttccctaagaagg #### Aldh3b2_ID239_5 --> 2 - 0 Original Alignment gaAACTGTGTGGTGCTGAAGCCATCAGAAATT-AGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG AGCTGCTTTGCTGTGATGTTG gtatacacgcaccaacctctcctcactactttcgtgtgctttcccaacaggaAACTGTGTGGTATTGAGGCCATCTGAAATTCAGTAAGAACACAGAG---ATGCAGGCAGAGCTGCTGCCACAGCATCTGGACCAGgtgtgtacctgtaattgtctcttgctcagAGCTGCTTTGCTGTGATGTTG Alignment from CESAR gaAACTGTGTGGTGCTGAAGCCATCAGAAATT-AGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG AGCTGCTTTGCTGTGATGTTG gtatacacgcaccaacctctcctcactactttcgtgtgctttcccaacaggaAACTGTGTGGTATTGAGGCCATCTGAAATTCAGTAAGAACACAGAG---ATGCAGGCAGAGCTGCTGCCACAGCATCTGGACCAGgtgtgcactatttttttcttcttggtcagAGCTGCTTTGCTGTGATGTTG Alignment from Spaln_aa2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATT-AGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCA GTATCTGGACCAGAGCTGC gtatacacgcaccaacctctcctcactactttcgtgtgctttcccaacagGAAACTGTGTGGTATTGAGGCCATCTGAAATTcAGTAAGAACACAGAG---ATGCAGGCAGAGCTGCTGCCACAgcatctggaccaggtgtgtacctgtaattgtctcttgctcagagC---------------TGC Alignment from Spaln_nt2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATT-AGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGAC-----------------------------CAGAGCTGCTTTGCTGTGATGTTG gtatacacgcaccaacctctcctcactactttcgtgtgctttcccaacagGAAACTGTGTGGTATTGAGGCCATCTGAAATTCAGTAAGAACACAGAGA---TGCAGGCAGAGCTGCTGCCACAGCATCTGGACCAGGTGTGTACCTGTAATTGTCTCTTGCTCAGAGCTGCTTTGCTGTGATGTTG Alignment from Pairagon GAAACTGTGTGGTGCTGAAGCCATCAGAAATT-AGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG-----------------------------AGCTGCTTTGCTGTGATGTTG gtatacacgcaccaacctctcctcactactttcgtgtgctttcccaacagGAAACTGTGTGGTATTGAGGCCATCTGAAATTCAGTAAGAACACAGAGA---TGCAGGCAGAGCTGCTGCCACAGCATCTGGACCAGGTGTGTACCTGTAATTGTCTCTTGCTCAGAGCTGCTTTGCTGTGATGTTG Alignment from Exonerate_protein2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATT-AGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAGAGC TGCTTTGCTGTGATG gtatacacgcaccaacctctcctcactactttcgtgtgctttcccaacagGAAACTGTGTGGTATTGAGGCCATCTGAAATTCAGTAAGAACACAGAG---ATGCAGGCAGAGCTGCTGCCACAGCATCTGGACCAG---gtgtgtacctgtaattgtctcttgctcagagcTGCTTTGCTGTGATG Alignment from Exonerate_coding2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATT-AGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAGAGC TGCTTTGCTGTGATG gtatacacgcaccaacctctcctcactactttcgtgtgctttcccaacagGAAACTGTGTGGTATTGAGGCCATCTGAAATTCAGTAAGAACACAGAG---ATGCAGGCAGAGCTGCTGCCACAGCATCTGGACCAG---gtgtgtacctgtaattgtctcttgctcagagcTGCTTTGCTGTGATG Alignment from GeneWise GAAACTGTGTGGTGCTGAAGCCATCAGAAATT-AGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG AGCTGCTTTGCTGTGATGTTG gtatacacgcaccaacctctcctcactactttcgtgtgctttcccaacagGAAACTGTGTGGTATTGAGGCCATCTGAAATTCAGTAAGAACACAGAG---ATGCAGGCAGAGCTGCTGCCACAGCATCTGGACCAGgtgtgtacctgtaattgtctcttgctcagAGCTGCTTTGCTGTGATGTTG #### Aldh3b2_ID240_6 --> 0 - 1 Original Alignment CTGCCCCAGTATCTGGACCAG AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTAT-ATCTTCTTCACAg CTGCCACAGCATCTGGACCAGgtaagcactatttttttcttcttggtcagAGCTGCTTTGCTGTGATGTTGGGAGGACCTGATGAGACCAGGCAGCTGCTGGAACACAAATTCGACTATCATCTTCTTCACAggtgagtcctgaggatatggtagcactgtccaggacctggggtagagcagg Alignment from CESAR CTGCCCCAGTATCTGGACCAG AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTAT-ATCTTCTTCACAg CTGCCACAGCATCTGGACCAGgtgtgcactatttttttcttcttggtcagAGCTGCTTTGCTGTGATGTTGGGAGGACCTGATGAGACCAGGCAGCTGCTGGAACACAAATTCGACTATCATCTTCTTCACAggtgagtcctgaggatatggtagcactgtccaggacctggggtagagcagg Alignment from Spaln_aa2Genome CTGCCCCAGTATCTGGAC-----------------------------CAGAGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTAT-ATCTTCTTCACAG CTGCCACAGCATCTGGACCAGGTAAGCACTATTTTTTTCTTCTTGgtCAGAGCTGCTTTGCTGTGATGTTGGGAGGACCTGATGAGACCAGGCAGCTGCTGGAACACAAATTCGACTATcATCTTCTTCACAGgtgagtcctgaggatatggtagcactgtccaggacctggggtagagcagg Alignment from Spaln_nt2Genome CTGCCCCAGTATCTGGAC-----------------------------CAGAGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTAT-ATCTTCTTCACAG CTGCCACAGCATCTGGACCAGGTAAGCACTATTTTTTTCTTCTTGGTCAGAGCTGCTTTGCTGTGATGTTGGGAGGACCTGATGAGACCAGGCAGCTGCTGGAACACAAATTCGACTATCATCTTCTTCACAGgtgagtcctgaggatatggtagcactgtccaggacctggggtagagcagg Alignment from Pairagon CTGCCCCAGTATCTGGACCAG-----------------------------AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTAT-ATCTTCTTCACAG CTGCCACAGCATCTGGACCAGGTAAGCACTATTTTTTTCTTCTTGGTCAGAGCTGCTTTGCTGTGATGTTGGGAGGACCTGATGAGACCAGGCAGCTGCTGGAACACAAATTCGACTATCATCTTCTTCACAGgtgagtcctgaggatatggtagcactgtccaggacctggggtagagcagg Alignment from Exonerate_protein2genome CCCCAGTATCTGGACCAGAGC TGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTAT-ATCTTCTTCACAG CCACAGCATCTGGACCAG---gtaagcactatttttttcttcttggtcagagcTGCTTTGCTGTGATGTTGGGAGGACCTGATGAGACCAGGCAGCTGCTGGAACACAAATTCGACTATCATCTTCTTCACAGgtgagtcctgaggatatggtagcactgtccaggacctggggtagagcagg Alignment from Exonerate_coding2genome CCCCAGTATCTGGACCAGAGC TGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTAT-ATCTTCTTCACAG CCACAGCATCTGGACCAG---gtaagcactatttttttcttcttggtcagagcTGCTTTGCTGTGATGTTGGGAGGACCTGATGAGACCAGGCAGCTGCTGGAACACAAATTCGACTATCATCTTCTTCACAGgtgagtcctgaggatatggtagcactgtccaggacctggggtagagcagg Alignment from GeneWise CTGCCCCAGTATCTGGACCAG AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTAT-------------- CTGCCACAGCATCTGGACCAGgtaagcactatttttttcttcttggtcagAGCTGCTTTGCTGTGATGTTGGGAGGACCTGATGAGACCAGGCAGCTGCTGGAACACAAATTCGACTATCATCTTCTTCACAGgtgagtcctgaggatatggtagcactgtccaggacctggggtagagcagg #### Ankrd13d_ID460_13 --> 2 - 0 Original Alignment gaAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCA-GGCACAGAGGCAGAGCAG tttctgatatgcctttgggctaaatgcactgattcttttctctttaacaggaAGCCTTTATCCATGTGAGGTAGACTCCACTGTGTTTGAGGCATCTGAGGGATACAGTGTCCTGGGTGCTGAGCGCAGTGAGCCCCTCCAGGATGAAGATGATGAGCTGCTGCAATTTGCCATCCAGCAGAGCCTGCTGGAGGCACGGCACACAGGCAGAGCAGgtaagctgtgagatggtgggttatggcccctactgtctcaggcccaaggt Alignment from CESAR gaAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCA-GGCACAGAGGCAGAGCAG tttctgatatgcctttgggctaaatgcactgattcttttctctttaacaggaAGCCTTTATCCATGTGAGGTAGACTCCACTGTGTTTGAGGCATCTGAGGGATACAGTGTCCTGGGTGCTGAGCGCAGTGAGCCCCTCCAGGATGAAGATGATGAGCTGCTGCAATTTGCCATCCAGCAGAGCCTGCTGGAGGCACGGCACACAGGCAGAGCAGgtaagctgtgagatggtgggttatggcccctactgtctcaggcccaaggt Alignment from Spaln_aa2Genome GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG tttctgatatgcctttgggctaaatgcactgattcttttctctttaacagGAAGCCTTTATCCATGTGAGGTAGACTCCACTGTGTTTGAGGCATCTGAGGGATACAGTGTCCTGGGTGCTGAGCGCAGTGAGCCCCTCCAGGATGAAGATGATGAGCTGCTGCAATTTGCCATCCAGCAGAGCCTGCTGGAGGCACGG---CACACAGGCAGAgcaggtaagctgtgagatggtgggttatggcccctactgtctcaggcccaaggt Alignment from Spaln_nt2Genome GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCA-GGCACAGAGGCAGAGCAG tttctgatatgcctttgggctaaatgcactgattcttttctctttaacagGAAGCCTTTATCCATGTGAGGTAGACTCCACTGTGTTTGAGGCATCTGAGGGATACAGTGTCCTGGGTGCTGAGCGCAGTGAGCCCCTCCAGGATGAAGATGATGAGCTGCTGCAATTTGCCATCCAGCAGAGCCTGCTGGAGGCACGGCACACAGGCAGAGCAGgtaagctgtgagatggtgggttatggcccctactgtctcaggcccaaggt Alignment from Pairagon GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCA-GGCACAGAGGCAGAGCAG tttctgatatgcctttgggctaaatgcactgattcttttctctttaacagGAAGCCTTTATCCATGTGAGGTAGACTCCACTGTGTTTGAGGCATCTGAGGGATACAGTGTCCTGGGTGCTGAGCGCAGTGAGCCCCTCCAGGATGAAGATGATGAGCTGCTGCAATTTGCCATCCAGCAGAGCCTGCTGGAGGCACGGCACACAGGCAGAGCAGgtaagctgtgagatggtgggttatggcccctactgtctcaggcccaaggt Alignment from Exonerate_protein2genome GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCA-GGCACAGAGGCAGAGCAG tttctgatatgcctttgggctaaatgcactgattcttttctctttaacagGAAGCCTTTATCCATGTGAGGTAGACTCCACTGTGTTTGAGGCATCTGAGGGATACAGTGTCCTGGGTGCTGAGCGCAGTGAGCCCCTCCAGGATGAAGATGATGAGCTGCTGCAATTTGCCATCCAGCAGAGCCTGCTGGAGGCACGGCACACAGGCAGAGCAGgtaagctgtgagatggtgggttatggcccctactgtctcaggcccaaggt Alignment from Exonerate_coding2genome GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCA-GGCACAGAGGCAGAGCAG tttctgatatgcctttgggctaaatgcactgattcttttctctttaacagGAAGCCTTTATCCATGTGAGGTAGACTCCACTGTGTTTGAGGCATCTGAGGGATACAGTGTCCTGGGTGCTGAGCGCAGTGAGCCCCTCCAGGATGAAGATGATGAGCTGCTGCAATTTGCCATCCAGCAGAGCCTGCTGGAGGCACGGCACACAGGCAGAGCAGgtaagctgtgagatggtgggttatggcccctactgtctcaggcccaaggt Alignment from GeneWise GAAGCCCTTTTCCATGTGAGGTGGACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAG-GCAGGCACAGAGGCAGAGCAG tttctgatatgcctttgggctaaatgcactgattcttttctctttaacagGAAGCCTTTATCCATGTGAGGTAGACTCCACTGTGTTTGAGGCATCTGAGGGATACAGTGTCCTGGGTGCTGAGCGCAGTGAGCCCCTCCAGGATGAAGATGATGAGCTGCTGCAATTTGCCATCCAGCAGAGCCTGCTGGAGGCACGGCACACAGGCAGAGCAGgtaagctgtgagatggtgggttatggcccctactgtctcaggcccaaggt #### BC049760_ID1437_2 --> 0 - 2 Original Alignment CCATCTTCAGAG-CCAGCATTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGac ttttacatgcctcgtgctgttcagggttttctctcctccctgcactgcagCCATCTTCCGAGCCCAGCATTGGATGAACAGCCGGAACCTACTGTTACATTCCTGTTCACACTCCTAAACACACCAGTGCCAATAGATGATGAGACAacgtcagtctaactgaaaagttgctcgaataatgcatatcagtgaggaattg Alignment from CESAR CCATCTTCAGAG-CCAGCATTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGac ttttacatgcctcgtgctgttcagggttttctctcctccctgcactgcagCCATCTTCCGAGCCCAGCATTGGATGAACAGCCGGAACCTACTGTTACATTCCTGTTCACACTCCTAAACACACCAGTGCCAATAGATGATGAGACAacgtcagtctaactgaaaagttgctcgaataatgcatatcagtgaggaattg Alignment from Spaln_aa2Genome CCATCTTCAGAGCCA-GCATTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGAC ttttacatgcctcgtgctgttcagggttttctctcctccctgcactgcagCCATCTTCCGAGCCCaGCATTGGATGAACAGCCGGAACCTACTGTTACATTCCTGTTCACACTCCTAAACACACCAGTGCCAATAGATGATGAGACAACgtcagtctaactgaaaagttgctcgaataatgcatatcagtgaggaattg Alignment from Spaln_nt2Genome CCATCTTCAGAGCC-AGCATTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGAC ttttacatgcctcgtgctgttcagggttttctctcctccctgcactgcagCCATCTTCCGAGCCCAGCATTGGATGAACAGCCGGAACCTACTGTTACATTCCTGTTCACACTCCTAAACACACCAGTGCCAATAGATGATGAGACAACgtcagtctaactgaaaagttgctcgaataatgcatatcagtgaggaattg Alignment from Pairagon CCATCTTCAGAG-CCAGCATTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGAC ttttacatgcctcgtgctgttcagggttttctctcctccctgcactgcagCCATCTTCCGAGCCCAGCATTGGATGAACAGCCGGAACCTACTGTTACATTCCTGTTCACACTCCTAAACACACCAGTGCCAATAGATGATGAGACAACgtcagtctaactgaaaagttgctcgaataatgcatatcagtgaggaattg Alignment from Exonerate_protein2genome CCATCTTCAGAG-CCAGCATTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGAC ttttacatgcctcgtgctgttcagggttttctctcctccctgcactgcagCCATCTTCCGAGCCCAGCATTGGATGAACAGCCGGAACCTACTGTTACATTCCTGTTCACACTCCTAAACACACCAGTGCCAATAGATGATGAGACAACgtcagtctaactgaaaagttgctcgaataatgcatatcagtgaggaattg Alignment from Exonerate_coding2genome CCATCTTCAGAG-CCAGCATTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGAC ttttacatgcctcgtgctgttcagggttttctctcctccctgcactgcagCCATCTTCCGAGCCCAGCATTGGATGAACAGCCGGAACCTACTGTTACATTCCTGTTCACACTCCTAAACACACCAGTGCCAATAGATGATGAGACAACgtcagtctaactgaaaagttgctcgaataatgcatatcagtgaggaattg Alignment from GeneWise CCATCTTCAGAGCCA-GCATTGGATGAGCAGCCGGAACCTACTGTCACATTCCTGTTCACACTCCTGAACACTCCGGTGCCCATAGACGATGAGACGAC ttttacatgcctcgtgctgttcagggttttctctcctccctgcactgcagCCATCTTCCGAGCCCAGCATTGGATGAACAGCCGGAACCTACTGTTACATTCCTGTTCACACTCCTAAACACACCAGTGCCAATAGATGATGAGACAACgtcagtctaactgaaaagttgctcgaataatgcatatcagtgaggaattg #### Bbs1_ID732_2 --> 1 - 1 Original Alignment cAACGAAGCCAATTCTAAATGGCTGGACGCACACTAC-GACCCCATGGCCAACATCCACACCTTCTCCTCCTGCCTGt aatttatttcatcatggggcatatcttctggctgccctcattctctctagcAATGAAGCCAATTCTAAATGGCTGGACGCACACTATCGACCCTATGGCCAACATCCACACTTTCTCCTCCTGTCTGtgtgagtctccatgaatgacttgggacatccggattctaaggggatgagaa Alignment from CESAR cAACGAAGCCAATTCTAAATGGCTGGACGCACACTAC-GACCCCATGGCCAACATCCACACCTTCTCCTCCTGCCTGt aatttatttcatcatggggcatatcttctggctgccctcattctctctagcAATGAAGCCAATTCTAAATGGCTGGACGCACACTATCGACCCTATGGCCAACATCCACACTTTCTCCTCCTGTCTGtgtgagtctccatgaatgacttgggacatccggattctaaggggatgagaa Alignment from Spaln_aa2Genome CAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGAC-CCCATGGCCAACATCCACACCTTCTCCTCCTGCCTGT aatttatttcatcatggggcatatcttctggctgccctcattctctctagCAATGAAGCCAATTCTAAATGGCTGGACGCACACTATCGAcCCTATGGCCAACATCCACACTTTCTCCTCCTGTCTGTgtgagtctccatgaatgacttgggacatccggattctaaggggatgagaa Alignment from Spaln_nt2Genome CAACGAAGCCAATTCTAAATGGCTGGACGCACACTA-CGACCCCATGGCCAACATCCACACCTTCTCCTCCTGCCTGT aatttatttcatcatggggcatatcttctggctgccctcattctctctagCAATGAAGCCAATTCTAAATGGCTGGACGCACACTATCGACCCTATGGCCAACATCCACACTTTCTCCTCCTGTCTGTgtgagtctccatgaatgacttgggacatccggattctaaggggatgagaa Alignment from Pairagon CAACGAAGCCAATTCTAAATGGCTGGACGCACACTA-CGACCCCATGGCCAACATCCACACCTTCTCCTCCTGCCTGT aatttatttcatcatggggcatatcttctggctgccctcattctctctagCAATGAAGCCAATTCTAAATGGCTGGACGCACACTATCGACCCTATGGCCAACATCCACACTTTCTCCTCCTGTCTGTgtgagtctccatgaatgacttgggacatccggattctaaggggatgagaa Alignment from Exonerate_protein2genome CAACGAAGCCAATTCTAAATGGCTGGACGCACACTAC-GACCCCATGGCCAACATCCACACCTTCTCCTCCTGCCTGT aatttatttcatcatggggcatatcttctggctgccctcattctctctagCAATGAAGCCAATTCTAAATGGCTGGACGCACACTATCGACCCTATGGCCAACATCCACACTTTCTCCTCCTGTCTGTgtgagtctccatgaatgacttgggacatccggattctaaggggatgagaa Alignment from Exonerate_coding2genome CAACGAAGCCAATTCTAAATGGCTGGACGCACACTAC-GACCCCATGGCCAACATCCACACCTTCTCCTCCTGCCTGT aatttatttcatcatggggcatatcttctggctgccctcattctctctagCAATGAAGCCAATTCTAAATGGCTGGACGCACACTATCGACCCTATGGCCAACATCCACACTTTCTCCTCCTGTCTGTgtgagtctccatgaatgacttgggacatccggattctaaggggatgagaa Alignment from GeneWise AGCAACGAAGCCAATTCTAAATGGCTGGACGCACACTAC-GACCCCATGGCCAACATCCACACCTTCTCCTCCTGCCTGT aatttatttcatcatggggcatatcttctggctgccctcattctctctAGCAATGAAGCCAATTCTAAATGGCTGGACGCACACTATCGACCCTATGGCCAACATCCACACTTTCTCCTCCTGTCTGTgtgagtctccatgaatgacttgggacatccggattctaaggggatgagaa #### Bscl2_ID2425_8 --> 0 - 1 Original Alignment GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCG-CGCCATCAGCCAg tcctgcagaggggagtcaaggctcactgacgcttctgcctttctctgcagGTTAATACCCGTCAAAGGGATAACTCACACCATGGAGCCCCACACCGCATCTCGCCACCATCAGCCAggtgagtgaattggttgatagaagtgaaggctggctgggcttgagggctga Alignment from CESAR GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCG-CGCCATCAGCCAg tcctgcagaggggagtcaaggctcactgacgcttctgcctttctctgcagGTTAATACCCGTCAAAGGGATAACTCACACCATGGAGCCCCACACCGCATCTCGCCACCATCAGCCAggtgagtgaattggttgatagaagtgaaggctggctgggcttgagggctga Alignment from Spaln_aa2Genome GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCG-CGCCATCAGCCAG tcctgcagaggggagtcaaggctcactgacgcttctgcctttctctgcagGTTAATACCCGTCAAAGGGATAACTCACACCATGGAGCCCCACACCGCATCTCGcCACCATCAGCCAGgtgagtgaattggttgatagaagtgaaggctggctgggcttgagggctga Alignment from Spaln_nt2Genome GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCG-CCATCAGCCAG tcctgcagaggggagtcaaggctcactgacgcttctgcctttctctgcagGTTAATACCCGTCAAAGGGATAACTCACACCATGGAGCCCCACACCGCATCTCGCCACCATCAGCCAGgtgagtgaattggttgatagaagtgaaggctggctgggcttgagggctga Alignment from Pairagon GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCG-CGCCATCAGCCAG tcctgcagaggggagtcaaggctcactgacgcttctgcctttctctgcagGTTAATACCCGTCAAAGGGATAACTCACACCATGGAGCCCCACACCGCATCTCGCCACCATCAGCCAGgtgagtgaattggttgatagaagtgaaggctggctgggcttgagggctga Alignment from Exonerate_protein2genome GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCG-CGCCATCAGCCAG tcctgcagaggggagtcaaggctcactgacgcttctgcctttctctgcagGTTAATACCCGTCAAAGGGATAACTCACACCATGGAGCCCCACACCGCATCTCGCCACCATCAGCCAGgtgagtgaattggttgatagaagtgaaggctggctgggcttgagggctga Alignment from Exonerate_coding2genome GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCG-CGCCATCAGCCAG tcctgcagaggggagtcaaggctcactgacgcttctgcctttctctgcagGTTAATACCCGTCAAAGGGATAACTCACACCATGGAGCCCCACACCGCATCTCGCCACCATCAGCCAGgtgagtgaattggttgatagaagtgaaggctggctgggcttgagggctga Alignment from GeneWise GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCG-CGCCATCAGCCAG tcctgcagaggggagtcaaggctcactgacgcttctgcctttctctgcagGTTAATACCCGTCAAAGGGATAACTCACACCATGGAGCCCCACACCGCATCTCGCCACCATCAGCCAGgtgagtgaattggttgatagaagtgaaggctggctgggcttgagggctga #### Cabp2_ID291_6 --> 0 - 1 Original Alignment TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATA-CTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAg gagtggacccagggctcagtcagtgatcactttcattctgatggtttcagTTCGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTTCAGGCAGCGCTTAAAGCTCTGCTGGGTGTACGCCTCAGCCAACGGGAAGTAGATGAGATACCTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAggtgagctttcccctacttctttccacatggcagcatttgtgaatggtgtt Alignment from CESAR TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATA-CTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAg gagtggacccagggctcagtcagtgatcactttcattctgatggtttcagTTCGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTTCAGGCAGCGCTTAAAGCTCTGCTGGGTGTACGCCTCAGCCAACGGGAAGTAGATGAGATACCTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAggtgagctttcccctacttctttccacatggcagcatttgtgaatggtgtt Alignment from Spaln_aa2Genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATA-CTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gagtggacccagggctcagtcagtgatcactttcattctgatggtttcagTTCGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTTCAGGCAGCGCTTAAAGCTCTGCTGGGTGTACGCCTCAGCCAACGGGAAGTAGATGAGATAcCTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAGgtgagctttcccctacttctttccacatggcagcatttgtgaatggtgtt Alignment from Spaln_nt2Genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATA-CTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gagtggacccagggctcagtcagtgatcactttcattctgatggtttcagTTCGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTTCAGGCAGCGCTTAAAGCTCTGCTGGGTGTACGCCTCAGCCAACGGGAAGTAGATGAGATACCTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAGgtgagctttcccctacttctttccacatggcagcatttgtgaatggtgtt Alignment from Pairagon TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATA-CTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gagtggacccagggctcagtcagtgatcactttcattctgatggtttcagTTCGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTTCAGGCAGCGCTTAAAGCTCTGCTGGGTGTACGCCTCAGCCAACGGGAAGTAGATGAGATACCTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAGgtgagctttcccctacttctttccacatggcagcatttgtgaatggtgtt Alignment from Exonerate_protein2genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATA-CTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gagtggacccagggctcagtcagtgatcactttcattctgatggtttcagTTCGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTTCAGGCAGCGCTTAAAGCTCTGCTGGGTGTACGCCTCAGCCAACGGGAAGTAGATGAGATACCTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAGgtgagctttcccctacttctttccacatggcagcatttgtgaatggtgtt Alignment from Exonerate_coding2genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATA-CTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAA gagtggacccagggctcagtcagtgatcactttcattctgatggtttcagTTCGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTTCAGGCAGCGCTTAAAGCTCTGCTGGGTGTACGCCTCAGCCAACGGGAAGTAGATGAGATACCTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAggtgagctttcccctacttctttccacatggcagcatttgtgaatggtgtt Alignment from GeneWise TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATA-CTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAGAATTTGTTCGGATGATGTCTCGG gagtggacccagggctcagtcagtgatcactttcattctgatggtttcagTTCGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTTCAGGCAGCGCTTAAAGCTCTGCTGGGTGTACGCCTCAGCCAACGGGAAGTAGATGAGATACCTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAGGTGAGCTTTCCCCTACTTCTTTCcacatggcagcatttgtgaatggtgtt #### Cabp4_ID339_5 --> 0 - 1 Original Alignment TTTGACAAG---GACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGAC-CTCAATGGGGATGGCACCATA---GACTTTGACg gtatgcaacgtgaggtggggtaaacatgcatcatctcttgcttttgttagTTTGATAAGGAGGATAGGGATGGATGGATCATGGTGGCGGAGCTGCGCCAGGCTGTGCCAGCTCTGCTAGGGGAACCACTAGAGGGTACTGAACTGGATGAAATGTTACGGGAAATGGACCCTCAATGGGGATGGGACCATAGAAGAGTTTGATggtatgaaaccctacatacacctcacccatgcctctattgccgtgaagatc Alignment from CESAR TTTGACAAG---GACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGAC-CTCAATGGGGATGGCACCATA---GACTTTGACg gtatgcaacgtgaggtggggtaaacatgcatcatctcttgcttttgttagTTTGATAAGGAGGATAGGGATGGATGGATCATGGTGGCGGAGCTGCGCCAGGCTGTGCCAGCTCTGCTAGGGGAACCACTAGAGGGTACTGAACTGGATGAAATGTTACGGGAAATGGACCCTCAATGGGGATGGGACCATAGAAGAGTTTGATggtatgaaaccctacatacacctcacccatgcctctattgccgtgaagatc Alignment from Spaln_aa2Genome TTTGACAAG---GACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGAC-CTCAATGGGGATGGCACCATA---GACTTTGACG gtatgcaacgtgaggtggggtaaacatgcatcatctcttgcttttgttagTTTGATAAGGAGGATAGGGATGGATGGATCATGGTGGCGGAGCTGCGCCAGGCTGTGCCAGCTCTGCTAGGGGAACCACTAGAGGGTACTGAACTGGATGAAATGTTACGGGAAATGGACcCTCAATGGGGATGGGACCATAGAAGAGTTTGATGgtatgaaaccctacatacacctcacccatgcctctattgccgtgaagatc Alignment from Spaln_nt2Genome TTTGACAAGGAC---AGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGAC-CTCAATGGGGATGGCACCATAGAC---TTTGACG gtatgcaacgtgaggtggggtaaacatgcatcatctcttgcttttgttagTTTGATAAGGAGGATAGGGATGGATGGATCATGGTGGCGGAGCTGCGCCAGGCTGTGCCAGCTCTGCTAGGGGAACCACTAGAGGGTACTGAACTGGATGAAATGTTACGGGAAATGGACCCTCAATGGGGATGGGACCATAGAAGAGTTTGATGgtatgaaaccctacatacacctcacccatgcctctattgccgtgaagatc Alignment from Pairagon TTTGACA---AGGACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGA-CCTCAATGGGGATGGCACCAT---AGACTTTGACG gtatgcaacgtgaggtggggtaaacatgcatcatctcttgcttttgttagTTTGATAAGGAGGATAGGGATGGATGGATCATGGTGGCGGAGCTGCGCCAGGCTGTGCCAGCTCTGCTAGGGGAACCACTAGAGGGTACTGAACTGGATGAAATGTTACGGGAAATGGACCCTCAATGGGGATGGGACCATAGAAGAGTTTGATGgtatgaaaccctacatacacctcacccatgcctctattgccgtgaagatc Alignment from Exonerate_protein2genome TTTGACAAG---GACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGAC-CTCAATGGGGATGGCACCATA---GACTTTGACG gtatgcaacgtgaggtggggtaaacatgcatcatctcttgcttttgttagTTTGATAAGGAGGATAGGGATGGATGGATCATGGTGGCGGAGCTGCGCCAGGCTGTGCCAGCTCTGCTAGGGGAACCACTAGAGGGTACTGAACTGGATGAAATGTTACGGGAAATGGACCCTCAATGGGGATGGGACCATAGAAGAGTTTGATGgtatgaaaccctacatacacctcacccatgcctctattgccgtgaagatc Alignment from Exonerate_coding2genome TTTGACAAG---GACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGAC-CTCAATGGGGATGGCACCATAGAC gtatgcaacgtgaggtggggtaaacatgcatcatctcttgcttttgttagTTTGATAAGGAGGATAGGGATGGATGGATCATGGTGGCGGAGCTGCGCCAGGCTGTGCCAGCTCTGCTAGGGGAACCACTAGAGGGTACTGAACTGGATGAAATGTTACGGGAAATGGACCCTCAATGGGGATGGGACCATAGAAgagtttgatggtatgaaaccctacatacacctcacccatgcctctattgccgtgaagatc Alignment from GeneWise TTTGACAAG---GACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGAC gtatgcaacgtgaggtggggtaaacatgcatcatctcttgcttttgttagTTTGATAAGGAGGATAGGGATGGATGGATCATGGTGGCGGAGCTGCGCCAGGCTGTGCCAGCTCTGCTAGGGGAACCACTAGAGGGTACTGAACTGGATGAAATGTTACGGGAAATGGACcctcaatggggatgggaccatagaagagtttgatggtatgaaaccctacatacacctcacccatgcctctattgccgtgaagatc #### Capn1_ID1356_20 --> 2 - 0 Original Alignment ggTTTTTCAAACTTCTGGAC-ACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG tcatctgtctggatgtcttcccagatttctctatgttctgccatctttagggTTTTCCAAACTTCTAGACCACAGGCCTGGATGGTGTTGTGACCTTTGATCTCTTTAAGgtaaggtaatccaccccactaaactaacccagccaggaggggcatccacc Alignment from CESAR ggTTTTTCAAACTTCTGGAC-ACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG tcatctgtctggatgtcttcccagatttctctatgttctgccatctttagggTTTTCCAAACTTCTAGACCACAGGCCTGGATGGTGTTGTGACCTTTGATCTCTTTAAGgtaaggtaatccaccccactaaactaacccagccaggaggggcatccacc Alignment from Spaln_aa2Genome GACACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG tcatctgtctggatgtcttcccagatttctctatgttctgccatctttagggttttccaaacttctagACCACAGGCCTGGATGGTGTTGTGACCTTTGATCTCTTTAAGgtaaggtaatccaccccactaaactaacccagccaggaggggcatccacc Alignment from Spaln_nt2Genome GGTTTTTCAAACTTCTGGAC-ACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG tcatctgtctggatgtcttcccagatttctctatgttctgccatctttagGGTTTTCCAAACTTCTAGACCACAGGCCTGGATGGTGTTGTGACCTTTGATCTCTTTAAGgtaaggtaatccaccccactaaactaacccagccaggaggggcatccacc Alignment from Pairagon GGTTTTTCAAACTTCTGGA-CACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG tcatctgtctggatgtcttcccagatttctctatgttctgccatctttagGGTTTTCCAAACTTCTAGACCACAGGCCTGGATGGTGTTGTGACCTTTGATCTCTTTAAGgtaaggtaatccaccccactaaactaacccagccaggaggggcatccacc Alignment from Exonerate_protein2genome GGTTTTTCAAACTTCTGGAC-ACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG tcatctgtctggatgtcttcccagatttctctatgttctgccatctttagGGTTTTCCAAACTTCTAGACCACAGGCCTGGATGGTGTTGTGACCTTTGATCTCTTTAAGgtaaggtaatccaccccactaaactaacccagccaggaggggcatccacc Alignment from Exonerate_coding2genome GGTTTTTCAAACTTCTGGAC-ACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG tcatctgtctggatgtcttcccagatttctctatgttctgccatctttagGGTTTTCCAAACTTCTAGACCACAGGCCTGGATGGTGTTGTGACCTTTGATCTCTTTAAGgtaaggtaatccaccccactaaactaacccagccaggaggggcatccacc Alignment from GeneWise tcatctgtctggatgtcttcccagatttctctatgttctgccatctttagggttttccaaacttctagaccacaggcctggatggtgttgtgacctttgatctctttaaggtaaggtaatccaccccactaaactaacccagccaggaggggcatccacc #### Capn1_ID1362_14 --> 0 - 0 Original Alignment AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAG-ACCTTGTTCAGCAAGTTGGCAGGGGAT taggcctaaatagccttgtccttagcctgcataactgttcttttccacagAAAGTTCTCTCTGAAGAAGAGATTGATGACAACTTCAAGCACCTTGTTCAGCAAGTTGGCAGGGGATgtaaggaaggcttggtaagtatgataaggtggagatcctaagtggaggaa Alignment from CESAR AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAG-ACCTTGTTCAGCAAGTTGGCAGGGGAT taggcctaaatagccttgtccttagcctgcataactgttcttttccacagAAAGTTCTCTCTGAAGAAGAGATTGATGACAACTTCAAGCACCTTGTTCAGCAAGTTGGCAGGGGATgtaaggaaggcttggtaagtatgataaggtggagatcctaagtggaggaa Alignment from Spaln_aa2Genome AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAG-ACCTTGTTCAGCAAGTTGGCAGGGGAT taggcctaaatagccttgtccttagcctgcataactgttcttttccacagAAAGTTCTCTCTGAAGAAGAGATTGATGACAACTTCAAGcACCTTGTTCAGCAAGTTGGCAGGGGATgtaaggaaggcttggtaagtatgataaggtggagatcctaagtggaggaa Alignment from Spaln_nt2Genome AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAG-ACCTTGTTCAGCAAGTTGGCAGGGGAT taggcctaaatagccttgtccttagcctgcataactgttcttttccacagAAAGTTCTCTCTGAAGAAGAGATTGATGACAACTTCAAGCACCTTGTTCAGCAAGTTGGCAGGGGATgtaaggaaggcttggtaagtatgataaggtggagatcctaagtggaggaa Alignment from Pairagon AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAG-ACCTTGTTCAGCAAGTTGGCAGGGGAT taggcctaaatagccttgtccttagcctgcataactgttcttttccacagAAAGTTCTCTCTGAAGAAGAGATTGATGACAACTTCAAGCACCTTGTTCAGCAAGTTGGCAGGGGATgtaaggaaggcttggtaagtatgataaggtggagatcctaagtggaggaa Alignment from Exonerate_protein2genome AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAG-ACCTTGTTCAGCAAGTTGGCAGGGGAT taggcctaaatagccttgtccttagcctgcataactgttcttttccacagAAAGTTCTCTCTGAAGAAGAGATTGATGACAACTTCAAGCACCTTGTTCAGCAAGTTGGCAGGGGATgtaaggaaggcttggtaagtatgataaggtggagatcctaagtggaggaa Alignment from Exonerate_coding2genome AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTCAAG-ACCTTGTTCAGCAAGTTGGCAGGGGAT taggcctaaatagccttgtccttagcctgcataactgttcttttccacagAAAGTTCTCTCTGAAGAAGAGATTGATGACAACTTCAAGCACCTTGTTCAGCAAGTTGGCAGGGGATgtaaggaaggcttggtaagtatgataaggtggagatcctaagtggaggaa Alignment from GeneWise AAAGTTCTCTCTGAAGAGGAGATTGATGACAACTTC-AAGACCTTGTTCAGCAAGTTGGCAGGGGAT taggcctaaatagccttgtccttagcctgcataactgttcttttccacagAAAGTTCTCTCTGAAGAAGAGATTGATGACAACTTCAAGCACCTTGTTCAGCAAGTTGGCAGGGGATgtaaggaaggcttggtaagtatgataaggtggagatcctaagtggaggaa #### Capn1_ID1363_13 --> 1 - 0 Original Alignment gGAACTAGATGACCAG-ATCCAGGCCAACCTCCCTGATGAG ctccctatgtccctaggccgctttgactctaaatctctctccttcaccaggGAACTAGATGACCAGCATTCAGGCTAACCTCCCTGATGAAgtgtggggttcctttgtctcccttgatactcaaataggacgtgagctccg Alignment from CESAR gGAACTAGATGACCAG-ATCCAGGCCAACCTCCCTGATGAG ctccctatgtccctaggccgctttgactctaaatctctctccttcaccaggGAACTAGATGACCAGCATTCAGGCTAACCTCCCTGATGAAgtgtggggttcctttgtctcccttgatactcaaataggacgtgagctccg Alignment from Spaln_aa2Genome GGAACTAGATGACCAG-ATCCAGGCCAACCTCCCTGATGAG ctccctatgtccctaggccgctttgactctaaatctctctccttcaccagGGAACTAGATGACCAGcATTCAGGCTAACCTCCCTGATGAAgtgtggggttcctttgtctcccttgatactcaaataggacgtgagctccg Alignment from Spaln_nt2Genome GGAACTAGATGACCAG-ATCCAGGCCAACCTCCCTGATGAG ctccctatgtccctaggccgctttgactctaaatctctctccttcaccagGGAACTAGATGACCAGCATTCAGGCTAACCTCCCTGATGAAgtgtggggttcctttgtctcccttgatactcaaataggacgtgagctccg Alignment from Pairagon GGAACTAGATGACCAG-ATCCAGGCCAACCTCCCTGATGAG ctccctatgtccctaggccgctttgactctaaatctctctccttcaccagGGAACTAGATGACCAGCATTCAGGCTAACCTCCCTGATGAAgtgtggggttcctttgtctcccttgatactcaaataggacgtgagctccg Alignment from Exonerate_protein2genome GGAACTAGATGACCAG-ATCCAGGCCAACCTCCCTGATGAG ctccctatgtccctaggccgctttgactctaaatctctctccttcaccagGGAACTAGATGACCAGCATTCAGGCTAACCTCCCTGATGAAgtgtggggttcctttgtctcccttgatactcaaataggacgtgagctccg Alignment from Exonerate_coding2genome ctccctatgtccctaggccgctttgactctaaatctctctccttcaccagggaactagatgaccagcattcaggctaacctccctgatgaagtgtggggttcctttgtctcccttgatactcaaataggacgtgagctccg Alignment from GeneWise ctccctatgtccctaggccgctttgactctaaatctctctccttcaccagggaactagatgaccagcattcaggctaacctccctgatgaagtgtggggttcctttgtctcccttgatactcaaataggacgtgagctccg #### Carns1_ID385_7 --> 0 - 1 Original Alignment GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCT-GTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCg cttggacggcttcttccaggctagtccctcttgtatgtttctgtatgcagATAGTGTGTGGTGTGGGCCATGGGGACCGA---GTACGGCACCACTACACTGTCCCAAGGACACTGAGGGTGGCACTGGCTCAGTGTGGCCTGGAAGACGGGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCTGAAGGCATGTTGGCTGCTCGTGCTGGCCCTGGAGGCTGGATTGAGTGTGGAGCAACATGGTGGC---CAAGTGCACACTGACTTCCTTggtaaagatggatgggagacatggctcagtctggttcgcttggaggcaggg Alignment from CESAR GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCT-GTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCg cttggacggcttcttccaggctagtccctcttgtatgtttctgtatgcagATAGTGTGTGGTGTGGGCCATGGGGACCGA---GTACGGCACCACTACACTGTCCCAAGGACACTGAGGGTGGCACTGGCTCAGTGTGGCCTGGAAGACGGGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCTGAAGGCATGTTGGCTGCTCGTGCTGGCCCTGGAGGCTGGATTGAGTGTGGAGCAACATGGTGGC---CAAGTGCACACTGACTTCCTTggtaaagatggatgggagacatggctcagtctggttcgcttggaggcaggg Alignment from Spaln_aa2Genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCT-GTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttggacggcttcttccaggctagtccctcttgtatgtttctgtatgcagATAGTGTGTGGTGTGGGCCATGGGGACCGA---GTACGGCACCACTACACTGTCCCAAGGACACTGAGGGTGGCACTGGCTCAGTGTGGCCTGGAAGACGGGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCTGAAGGCATGTTGGCTGCTcGTGCTGGCCCTGGAGGCTGGATTGAGTGTGGAGCAACATGGTGGC---CAAGTGCACACTGACTTCCTTGgtaaagatggatgggagacatggctcagtctggttcgcttggaggcaggg Alignment from Spaln_nt2Genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCT-GTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttggacggcttcttccaggctagtccctcttgtatgtttctgtatgcagATAGTGTGTGGTGTGGGCCATGGGGACCGA---GTACGGCACCACTACACTGTCCCAAGGACACTGAGGGTGGCACTGGCTCAGTGTGGCCTGGAAGACGGGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCTGAAGGCATGTTGGCTGCTCGTGCTGGCCCTGGAGGCTGGATTGAGTGTGGAGCAACATGGTGG---CCAAGTGCACACTGACTTCCTTGgtaaagatggatgggagacatggctcagtctggttcgcttggaggcaggg Alignment from Pairagon GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCT-GTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttggacggcttcttccaggctagtccctcttgtatgtttctgtatgcagATAGTGTGTGGTGTGGGCCATGGGGACCGA---GTACGGCACCACTACACTGTCCCAAGGACACTGAGGGTGGCACTGGCTCAGTGTGGCCTGGAAGACGGGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCTGAAGGCATGTTGGCTGCTCGTGCTGGCCCTGGAGGCTGGATTGAGTGTGGAGCAACATGGTG---GCCAAGTGCACACTGACTTCCTTGgtaaagatggatgggagacatggctcagtctggttcgcttggaggcaggg Alignment from Exonerate_protein2genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCT-GTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttggacggcttcttccaggctagtccctcttgtatgtttctgtatgcagATAGTGTGTGGTGTGGGCCATGGGGACCGA---GTACGGCACCACTACACTGTCCCAAGGACACTGAGGGTGGCACTGGCTCAGTGTGGCCTGGAAGACGGGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCTGAAGGCATGTTGGCTGCTCGTGCTGGCCCTGGAGGCTGGATTGAGTGTGGAGCAACATGGTGGC---CAAGTGCACACTGACTTCCTTGgtaaagatggatgggagacatggctcagtctggttcgcttggaggcaggg Alignment from Exonerate_coding2genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCT-GTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttggacggcttcttccaggctagtccctcttgtatgtttctgtatgcagATAGTGTGTGGTGTGGGCCATGGGGACCGA---GTACGGCACCACTACACTGTCCCAAGGACACTGAGGGTGGCACTGGCTCAGTGTGGCCTGGAAGACGGGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCTGAAGGCATGTTGGCTGCTCGTGCTGGCCCTGGAGGCTGGATTGAGTGTGGAGCAACATGGTGGC---CAAGTGCACACTGACTTCCTTGgtaaagatggatgggagacatggctcagtctggttcgcttggaggcaggg Alignment from GeneWise GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCC-GCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttggacggcttcttccaggctagtccctcttgtatgtttctgtatgcagATAGTGTGTGGTGTGGGCCATGGGGACCGA---GTACGGCACCACTACACTGTCCCAAGGACACTGAGGGTGGCACTGGCTCAGTGTGGCCTGGAAGACGGGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCTGAAGGCATGTTGGCTGCTCGTGCTGGCCCTGGAGGCTGGATTGAGTGTGGAGCAACATGGTGGC---CAAGTGCACACTGACTTCCTTGgtaaagatggatgggagacatggctcagtctggttcgcttggaggcaggg #### Carns1_ID386_6 --> 2 - 0 Original Alignment gcGGTCCTGCACCTGGCCCTGAGCTGGCT-GTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG tctgggagtagaaacaggcctctatactcttttatttcacttttatttaggaGGTCCTGCACCTGGCCCTGAGCTAGCTCGTGCACATGTGTGCAGTGGTGTGTCAGATTCAGGGTGACAGGCCCCTGCTGAGTAAGgtatgtggcgtatgcagtcctgtacaacccccactcagtctagccctgag Alignment from CESAR gcGGTCCTGCACCTGGCCCTGAGCTGGCT-GTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG tctgggagtagaaacaggcctctatactcttttatttcacttttatttaggaGGTCCTGCACCTGGCCCTGAGCTAGCTCGTGCACATGTGTGCAGTGGTGTGTCAGATTCAGGGTGACAGGCCCCTGCTGAGTAAGgtatgtggcgtatgcagtcctgtacaacccccactcagtctagccctgag Alignment from Spaln_aa2Genome GCGGTCCTGCACCTGGCCCTGAGCTGGCT-GTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG tctgggagtagaaacaggcctctatactcttttatttcacttttatttagGAGGTCCTGCACCTGGCCCTGAGCTAGCTcGTGCACATGTGTGCAGTGGTGTGTCAGATTCAGGGTGACAGGCCCCTGCTGAGTAAGgtatgtggcgtatgcagtcctgtacaacccccactcagtctagccctgag Alignment from Spaln_nt2Genome GCGGTCCTGCACCTGGCCCTGAGCTGGCT-GTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG tctgggagtagaaacaggcctctatactcttttatttcacttttatttagGAGGTCCTGCACCTGGCCCTGAGCTAGCTCGTGCACATGTGTGCAGTGGTGTGTCAGATTCAGGGTGACAGGCCCCTGCTGAGTAAGgtatgtggcgtatgcagtcctgtacaacccccactcagtctagccctgag Alignment from Pairagon GCGGTCCTGCACCTGGCCCTGAGCTGGCT-GTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG tctgggagtagaaacaggcctctatactcttttatttcacttttatttagGAGGTCCTGCACCTGGCCCTGAGCTAGCTCGTGCACATGTGTGCAGTGGTGTGTCAGATTCAGGGTGACAGGCCCCTGCTGAGTAAGgtatgtggcgtatgcagtcctgtacaacccccactcagtctagccctgag Alignment from Exonerate_protein2genome GCGGTCCTGCACCTGGCCCTGAGCTGGCT-GTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG tctgggagtagaaacaggcctctatactcttttatttcacttttatttagGAGGTCCTGCACCTGGCCCTGAGCTAGCTCGTGCACATGTGTGCAGTGGTGTGTCAGATTCAGGGTGACAGGCCCCTGCTGAGTAAGgtatgtggcgtatgcagtcctgtacaacccccactcagtctagccctgag Alignment from Exonerate_coding2genome GCGGTCCTGCACCTGGCCCTGAGCTGGCT-GTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG tctgggagtagaaacaggcctctatactcttttatttcacttttatttagGAGGTCCTGCACCTGGCCCTGAGCTAGCTCGTGCACATGTGTGCAGTGGTGTGTCAGATTCAGGGTGACAGGCCCCTGCTGAGTAAGgtatgtggcgtatgcagtcctgtacaacccccactcagtctagccctgag Alignment from GeneWise GCGGTCCTGCACCTGGCCCTGAGCTG-GCTGTGCGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG tctgggagtagaaacaggcctctatactcttttatttcacttttatttagGAGGTCCTGCACCTGGCCCTGAGCTAGCTCGTGCACATGTGTGCAGTGGTGTGTCAGATTCAGGGTGACAGGCCCCTGCTGAGTAAGgtatgtggcgtatgcagtcctgtacaacccccactcagtctagccctgag #### Carns1_ID388_4 --> 2 - 0 Original Alignment gaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAG-GCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG aatcagaaatcagtgttggctggccggaattcttcattttgtcctcgtaggaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGCGCGGTCCTGCTGGTTTCTAAGGCTGTGAGCTTCTATCCAGGGGGCTTGACATTCCTGGATGACTTTGTTCCCCCCCGGCACGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGTTAGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGCGGTGTGGCTGTGCCAGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACATTCTGAGGCCTTGGGTGATGCTTCACAGgtgagcgcaggcctgggtacccatgggagggaaccccagactgtccatac Alignment from CESAR gaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAG-GCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG aatcagaaatcagtgttggctggccggaattcttcattttgtcctcgtaggaAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGCGCGGTCCTGCTGGTTTCTAAGGCTGTGAGCTTCTATCCAGGGGGCTTGACATTCCTGGATGACTTTGTTCCCCCCCGGCACGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGTTAGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGCGGTGTGGCTGTGCCAGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACATTCTGAGGCCTTGGGTGATGCTTCACAGgtgagcgcaggcctgggtacccatgggagggaaccccagactgtccatac Alignment from Spaln_aa2Genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAG-GCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG aatcagaaatcagtgttggctggccggaattcttcattttgtcctcgtagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGcGCGGTCCTGCTGGTTTCTAAGGCTGTGAGCTTCTATCCAGGGGGCTTGACATTCCTGGATGACTTTGTTCCCCCCCGGCACGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGTTAGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGCGGTGTGGCTGTGCCAGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACATTCTGAGGCCTTGGGTGATGCTTCACAGgtgagcgcaggcctgggtacccatgggagggaaccccagactgtccatac Alignment from Spaln_nt2Genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAG-GCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG aatcagaaatcagtgttggctggccggaattcttcattttgtcctcgtagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGCGCGGTCCTGCTGGTTTCTAAGGCTGTGAGCTTCTATCCAGGGGGCTTGACATTCCTGGATGACTTTGTTCCCCCCCGGCACGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGTTAGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGCGGTGTGGCTGTGCCAGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACATTCTGAGGCCTTGGGTGATGCTTCACAGgtgagcgcaggcctgggtacccatgggagggaaccccagactgtccatac Alignment from Pairagon GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAG-GCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG aatcagaaatcagtgttggctggccggaattcttcattttgtcctcgtagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGCGCGGTCCTGCTGGTTTCTAAGGCTGTGAGCTTCTATCCAGGGGGCTTGACATTCCTGGATGACTTTGTTCCCCCCCGGCACGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGTTAGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGCGGTGTGGCTGTGCCAGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACATTCTGAGGCCTTGGGTGATGCTTCACAGgtgagcgcaggcctgggtacccatgggagggaaccccagactgtccatac Alignment from Exonerate_protein2genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAG-GCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG aatcagaaatcagtgttggctggccggaattcttcattttgtcctcgtagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGCGCGGTCCTGCTGGTTTCTAAGGCTGTGAGCTTCTATCCAGGGGGCTTGACATTCCTGGATGACTTTGTTCCCCCCCGGCACGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGTTAGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGCGGTGTGGCTGTGCCAGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACATTCTGAGGCCTTGGGTGATGCTTCACAGgtgagcgcaggcctgggtacccatgggagggaaccccagactgtccatac Alignment from Exonerate_coding2genome GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAG-GCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG aatcagaaatcagtgttggctggccggaattcttcattttgtcctcgtagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGCGCGGTCCTGCTGGTTTCTAAGGCTGTGAGCTTCTATCCAGGGGGCTTGACATTCCTGGATGACTTTGTTCCCCCCCGGCACGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGTTAGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGCGGTGTGGCTGTGCCAGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACATTCTGAGGCCTTGGGTGATGCTTCACAGgtgagcgcaggcctgggtacccatgggagggaaccccagactgtccatac Alignment from GeneWise GAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAG-GCAGTCCTGCTGGTCTCTAAGGCTGTGAGCTTCTATCCAGGGGGCCTGACATTCCTGGATGACTTTGTTCCCCCTCGGCATGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCCACAGGAACCTCATCGGAGCTGTCCCAGCTGCTGGAGAACCGGCTGCTGATGAGGTGGTTGCTGTCCCAGCAGAGTGGTGTGGCCGTGCCAGCTACCCTGGCTTTCACTTATAGGCCTCCGGGGCTGCTTCGGGGAGGGGATGCCAGCCCTGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTGGTGAAAGAGGAAGTAGAGGCCTTTGTGCACTCCGAGGCCTTGGGTGATGCTTCACAG aatcagaaatcagtgttggctggccggaattcttcattttgtcctcgtagGAAACATGCTCCTTTGCCTGTCCCCTGCTTGGCTAATGAAGGTGGCAACTCCAGGCCAAGAGGGTGAGCGCGGTCCTGCTGGTTTCTAAGGCTGTGAGCTTCTATCCAGGGGGCTTGACATTCCTGGATGACTTTGTTCCCCCCCGGCACGCTACTTACTTCCTGGCAGGCCTGGGGCCAGAATCTGGCCGTGGCAAGGAGGCAGCAGAGCTGGCTCGGAATCTCACTTGCCCTACAGGAACCTCATCAGAGCTGTCCCAGCTGTTAGAGAACCGGCTGCTCATGAGGTGGTTGCTGTCCCAGCAGAGCGGTGTGGCTGTGCCAGCTACCCTAGCTTTCACTTATAGGCCTCCAGGACTGCTTCGGGGTGGGGATCCCAGCCCAGGACTCCGGCTGGTGGAACTCAGTGGGAAGGAGGGCCAGGAAACACTTGTGAAAGAGGAAGTAGAGGCCTTTGTACATTCTGAGGCCTTGGGTGATGCTTCACAGgtgagcgcaggcctgggtacccatgggagggaaccccagactgtccatac #### Catsper1_ID929_6 --> 2 - 1 Original Alignment tcCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTG-GACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAg gaaatctaatctgactacagtgatgatatggctctgtgtttgtccctcagtcCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGCGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAggtgagttgagctaaggatctagggcccaagtggcacacactaataatgag Alignment from CESAR tcCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTG-GACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAg gaaatctaatctgactacagtgatgatatggctctgtgtttgtccctcagtcCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGCGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAggtgagttgagctaaggatctagggcccaagtggcacacactaataatgag Alignment from Spaln_aa2Genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTG-GACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctgactacagtgatgatatggctctgtgtttgtccctcagTCCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGcGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtgagttgagctaaggatctagggcccaagtggcacacactaataatgag Alignment from Spaln_nt2Genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTG-GACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctgactacagtgatgatatggctctgtgtttgtccctcagTCCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGCGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtgagttgagctaaggatctagggcccaagtggcacacactaataatgag Alignment from Pairagon TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTG-GACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctgactacagtgatgatatggctctgtgtttgtccctcagTCCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGCGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtgagttgagctaaggatctagggcccaagtggcacacactaataatgag Alignment from Exonerate_protein2genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTG-GACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctgactacagtgatgatatggctctgtgtttgtccctcagTCCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGCGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtgagttgagctaaggatctagggcccaagtggcacacactaataatgag Alignment from Exonerate_coding2genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTG-GACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctgactacagtgatgatatggctctgtgtttgtccctcagTCCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGCGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtgagttgagctaaggatctagggcccaagtggcacacactaataatgag Alignment from GeneWise TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACC-CTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctgactacagtgatgatatggctctgtgtttgtccctcagTCCTCTTCTCTGTGGTACTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGCGATGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtgagttgagctaaggatctagggcccaagtggcacacactaataatgag #### Catsper1_ID932_9 --> 0 - 1 Original Alignment CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGAC-TCTCTGACAGATCTCAACAAAGCAg aaacccagaaaaagaatcccagatcccattctatacctcaattcttctagCAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACCTCTCTGACAGATCTCAATAAGGCAggtaggaatcagtcctccatcccatccctctactcactcactagagttgcc Alignment from CESAR CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGAC-TCTCTGACAGATCTCAACAAAGCAg aaacccagaaaaagaatcccagatcccattctatacctcaattcttctagCAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACCTCTCTGACAGATCTCAATAAGGCAggtaggaatcagtcctccatcccatccctctactcactcactagagttgcc Alignment from Spaln_aa2Genome CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGAC-TCTCTGACAGATCTCAACAAAGCAG aaacccagaaaaagaatcccagatcccattctatacctcaattcttctagCAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACcTCTCTGACAGATCTCAATAAGGCAGgtaggaatcagtcctccatcccatccctctactcactcactagagttgcc Alignment from Spaln_nt2Genome CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGA-CTCTCTGACAGATCTCAACAAAGCAG aaacccagaaaaagaatcccagatcccattctatacctcaattcttctagCAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACCTCTCTGACAGATCTCAATAAGGCAGgtaggaatcagtcctccatcccatccctctactcactcactagagttgcc Alignment from Pairagon CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGA-CTCTCTGACAGATCTCAACAAAGCAG aaacccagaaaaagaatcccagatcccattctatacctcaattcttctagCAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACCTCTCTGACAGATCTCAATAAGGCAGgtaggaatcagtcctccatcccatccctctactcactcactagagttgcc Alignment from Exonerate_protein2genome CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGAC-TCTCTGACAGATCTCAACAAAGCAG aaacccagaaaaagaatcccagatcccattctatacctcaattcttctagCAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACCTCTCTGACAGATCTCAATAAGGCAGgtaggaatcagtcctccatcccatccctctactcactcactagagttgcc Alignment from Exonerate_coding2genome CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGAC-TCTCTGACAGATCTCAACAAAGCAG aaacccagaaaaagaatcccagatcccattctatacctcaattcttctagCAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACCTCTCTGACAGATCTCAATAAGGCAGgtaggaatcagtcctccatcccatccctctactcactcactagagttgcc Alignment from GeneWise CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGAC-TCTCTGACAGATCTCAACAAAGCAG aaacccagaaaaagaatcccagatcccattctatacctcaattcttctagCAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACCTCTCTGACAGATCTCAATAAGGCAGgtaggaatcagtcctccatcccatccctctactcactcactagagttgcc #### Ccdc88b_ID1824_25 --> 2 - 1 Original Alignment ggTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAG-ACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAg ccttcctatgttgggatgacccttctcctgagctttgcctttcattgcagggTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCGCTCTGCTTGGGAGATGAGCACCCTAGCTGGTGGGCAGCGGCGAAGTCTCAGTTCCCAGTTCCCTGTGGGCCGAAGTCCTGCATCATTCAGTCCAGGCGACACATCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTTGGGGCACCAAGTACCTATAGCAAAggtgagtcatagattcctagaattgaagctcccattgttttgtgtgagtgg Alignment from CESAR ggTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAG-ACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAg ccttcctatgttgggatgacccttctcctgagctttgcctttcattgcagggTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCGCTCTGCTTGGGAGATGAGCACCCTAGCTGGTGGGCAGCGGCGAAGTCTCAGTTCCCAGTTCCCTGTGGGCCGAAGTCCTGCATCATTCAGTCCAGGCGACACATCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTTGGGGCACCAAGTACCTATAGCAAAggtgagtcatagattcctagaattgaagctcccattgttttgtgtgagtgg Alignment from Spaln_aa2Genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAG-ACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG ccttcctatgttgggatgacccttctcctgagctttgcctttcattgcagGGTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCGCTCTGCTTGGGAGATGAGcACCCTAGCTGGTGGGCAGCGGCGAAGTCTCAGTTCCCAGTTCCCTGTGGGCCGAAGTCCTGCATCATTCAGTCCAGGCGACACATCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTTGGGGCACCAAGTACCTATAGCAAAGgtgagtcatagattcctagaattgaagctcccattgttttgtgtgagtgg Alignment from Spaln_nt2Genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAG-ACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG ccttcctatgttgggatgacccttctcctgagctttgcctttcattgcagGGTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCGCTCTGCTTGGGAGATGAGCACCCTAGCTGGTGGGCAGCGGCGAAGTCTCAGTTCCCAGTTCCCTGTGGGCCGAAGTCCTGCATCATTCAGTCCAGGCGACACATCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTTGGGGCACCAAGTACCTATAGCAAAGgtgagtcatagattcctagaattgaagctcccattgttttgtgtgagtgg Alignment from Pairagon GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAG-ACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG ccttcctatgttgggatgacccttctcctgagctttgcctttcattgcagGGTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCGCTCTGCTTGGGAGATGAGCACCCTAGCTGGTGGGCAGCGGCGAAGTCTCAGTTCCCAGTTCCCTGTGGGCCGAAGTCCTGCATCATTCAGTCCAGGCGACACATCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTTGGGGCACCAAGTACCTATAGCAAAGgtgagtcatagattcctagaattgaagctcccattgttttgtgtgagtgg Alignment from Exonerate_protein2genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAG-ACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG ccttcctatgttgggatgacccttctcctgagctttgcctttcattgcagGGTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCGCTCTGCTTGGGAGATGAGCACCCTAGCTGGTGGGCAGCGGCGAAGTCTCAGTTCCCAGTTCCCTGTGGGCCGAAGTCCTGCATCATTCAGTCCAGGCGACACATCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTTGGGGCACCAAGTACCTATAGCAAAGgtgagtcatagattcctagaattgaagctcccattgttttgtgtgagtgg Alignment from Exonerate_coding2genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAG-ACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG ccttcctatgttgggatgacccttctcctgagctttgcctttcattgcagGGTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCGCTCTGCTTGGGAGATGAGCACCCTAGCTGGTGGGCAGCGGCGAAGTCTCAGTTCCCAGTTCCCTGTGGGCCGAAGTCCTGCATCATTCAGTCCAGGCGACACATCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTTGGGGCACCAAGTACCTATAGCAAAGgtgagtcatagattcctagaattgaagctcccattgttttgtgtgagtgg Alignment from GeneWise GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAG-ACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCCAGTACCCACAGCAAAG ccttcctatgttgggatgacccttctcctgagctttgcctttcattgcagGGTCGTCATCACCAGCACCCATGCACCGCATCCAGAGCTCGCTCTGCTTGGGAGATGAGCACCCTAGCTGGTGGGCAGCGGCGAAGTCTCAGTTCCCAGTTCCCTGTGGGCCGAAGTCCTGCATCATTCAGTCCAGGCGACACATCACGGCAATGGTTCAGACAGCAAAGGCCAGGCCCCCTTGGGGCACCAAGTACCTATAGCAAAGgtgagtcatagattcctagaattgaagctcccattgttttgtgtgagtgg #### Ccdc88b_ID1826_23 --> 1 - 2 Original Alignment GAGTACct gGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTG-GAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCaa GAGTATctgtgggtatgctcagggtcaggtctctttcccttccccactaggGACCAACTTAACGCCTTGCACCAGGAGAAACAGAAGCTGGTTCGAG---ATCATGGACCAGTACCGTGTACTAGAACCTGGGCCCCTGCCCCGTACTaagtaaagcagtaccttgcagaaccaggctcctgttagcattttgccctgtc Alignment from CESAR GAGTACct gGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCaa GAGTATctgttagtatgctcagggtcaggtctctttcccttccccactaggGACCAACTTAACGCCTTGCACCAGGAGAAACAGAAGCTGGTT--CGAGATCATGGACCAGTACCGTGTACTAGAACCTGGGCCCCTGCCCCGTACTaagtaaagcagtaccttgcagaaccaggctcctgttagcattttgccctgtc Alignment from Spaln_aa2Genome GAGTACCT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA GAGTATCTgtgggtatgctcagggtcaggtctctttcccttccccactagGGACCAACTTAACGCCTTGCACCAGGAGAAACAGAAGCTGGTTC--GAGATCATGGACCAGTACCGTGTACTAGAACCTGGGCCCCTGCCCCGTACTAAgtaaagcagtaccttgcagaaccaggctcctgttagcattttgccctgtc Alignment from Spaln_nt2Genome GAGTACCT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA GAGTATCTgtgggtatgctcagggtcaggtctctttcccttccccactagGGACCAACTTAACGCCTTGCACCAGGAGAAACAGAAGCTGGT--TCGAGATCATGGACCAGTACCGTGTACTAGAACCTGGGCCCCTGCCCCGTACTAAgtaaagcagtaccttgcagaaccaggctcctgttagcattttgccctgtc Alignment from Pairagon GAGTACCT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGG-TGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA GAGTATCTgtgggtatgctcagggtcaggtctctttcccttccccactagGGACCAACTTAACGCCTTGCACCAGGAGAAACAGAAGCTGGTTCGAG---ATCATGGACCAGTACCGTGTACTAGAACCTGGGCCCCTGCCCCGTACTAAgtaaagcagtaccttgcagaaccaggctcctgttagcattttgccctgtc Alignment from Exonerate_protein2genome GAGTACCT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTG-GAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA GAGTATCTgtgggtatgctcagggtcaggtctctttcccttccccactagGGACCAACTTAACGCCTTGCACCAGGAGAAACAGAAGCTGGTTCGAG---ATCATGGACCAGTACCGTGTACTAGAACCTGGGCCCCTGCCCCGTACTAAgtaaagcagtaccttgcagaaccaggctcctgttagcattttgccctgtc Alignment from Exonerate_coding2genome GAGTACCT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTG-GAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA GAGTATCTgtgggtatgctcagggtcaggtctctttcccttccccactagGGACCAACTTAACGCCTTGCACCAGGAGAAACAGAAGCTGGTTCGAG---ATCATGGACCAGTACCGTGTACTAGAACCTGGGCCCCTGCCCCGTACTAAgtaaagcagtaccttgcagaaccaggctcctgttagcattttgccctgtc Alignment from GeneWise GAGTACCTG------------------------------------------GACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA GAGTATCTGTGGGTATGCTCAGGGTCAGGTCTCTTTCCCTTCCCCACTAGGGACCAACTTAACGCCTTGCACCAGGAGAAACAGAAGCTGGTTC--GAGATCATGGACCAGTACCGTGTACTAGAACCTGGGCCCCTGCCCCGTACTAAgtaaagcagtaccttgcagaaccaggctcctgttagcattttgccctgtc #### Ccdc88b_ID1827_22 --> 0 - 2 Original Alignment CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTG-AGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACct gGACCAGC ctggacagtccagggcctggtattcaacagtgactgttctttgtttctagCTTCTGACCCAGCTCCGCAGTGTACAAGAGGAGGAGAACAGGCAGCTTTTAGCAGAGGTCAAGGCCTTACAGTCGGACGAACAGGGAGCTGCTGGAGCGTAGTTTGGAGAGT---GACCCTCTGCATCGTGAGCAGCCAGAGTATctgttagtatgctcagggtcagattgacacagctgcctctgcaggGACCAAC Alignment from CESAR CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTG-AGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACct gGACCAGC ctggacagtccagggcctggtattcaacagtgactgttctttgtttctagCTTCTGACCCAGCTCCGCAGTGTACAAGAGGAGGAGAACAGGCAGCTTTTAGCAGAGGTCAAGGCCTTACAGTCGGACGAACAGGGAGCTGCTGGAGCGTAGTTTGGAGAGT---GACCCTCTGCATCGTGAGCAGCCAGAGTATctgttagtatgctcagggtcaggtctctttcccttccccactaggGACCAAC Alignment from Spaln_aa2Genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTG-AGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GGACCAGC ctggacagtccagggcctggtattcaacagtgactgttctttgtttctagCTTCTGACCCAGCTCCGCAGTGTACAAGAGGAGGAGAACAGGCAGCTTTTAGCAGAGGTCAAGGCCTTAcAGTCGGACGAACAGGGAGCTGCTGGAGCGTAGTTTGGAGAGT---GACCCTCTGCATCGTGAGCAGCCAGAGTATCTgttagtatgctcagggtcagattgacacagctgcctctgcagGGACCAAC Alignment from Spaln_nt2Genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTG-AGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GGACCAGC ctggacagtccagggcctggtattcaacagtgactgttctttgtttctagCTTCTGACCCAGCTCCGCAGTGTACAAGAGGAGGAGAACAGGCAGCTTTTAGCAGAGGTCAAGGCCTTACAGTCGGACGAACAGGGAGCTGCTGGAGCGTAGTTTGGAGA---GTGACCCTCTGCATCGTGAGCAGCCAGAGTATCTgttagtatgctcagggtcagattgacacagctgcctctgcagGGACCAAC Alignment from Pairagon CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTG-AGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GGACCAGC ctggacagtccagggcctggtattcaacagtgactgttctttgtttctagCTTCTGACCCAGCTCCGCAGTGTACAAGAGGAGGAGAACAGGCAGCTTTTAGCAGAGGTCAAGGCCTTACAGTCGGACGAACAGGGAGCTGCTGGAGCGTAGTTTGGAGA---GTGACCCTCTGCATCGTGAGCAGCCAGAGTATCTgttagtatgctcagggtcagattgacacagctgcctctgcagGGACCAAC Alignment from Exonerate_protein2genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTG-AGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GGACCAGC ctggacagtccagggcctggtattcaacagtgactgttctttgtttctagCTTCTGACCCAGCTCCGCAGTGTACAAGAGGAGGAGAACAGGCAGCTTTTAGCAGAGGTCAAGGCCTTACAGTCGGACGAACAGGGAGCTGCTGGAGCGTAGTTTGGAGAGT---GACCCTCTGCATCGTGAGCAGCCAGAGTATCTgttagtatgctcagggtcagattgacacagctgcctctgcagGGACCAAC Alignment from Exonerate_coding2genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTG-AGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GGACCAGC ctggacagtccagggcctggtattcaacagtgactgttctttgtttctagCTTCTGACCCAGCTCCGCAGTGTACAAGAGGAGGAGAACAGGCAGCTTTTAGCAGAGGTCAAGGCCTTACAGTCGGACGAACAGGGAGCTGCTGGAGCGTAGTTTGGAGAGT---GACCCTCTGCATCGTGAGCAGCCAGAGTATCTgttagtatgctcagggtcagattgacacagctgcctctgcagGGACCAAC Alignment from GeneWise CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTG-AGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GGACCAGC ctggacagtccagggcctggtattcaacagtgactgttctttgtttctagCTTCTGACCCAGCTCCGCAGTGTACAAGAGGAGGAGAACAGGCAGCTTTTAGCAGAGGTCAAGGCCTTACAGTCGGACGAACAGGGAGCTGCTGGAGCGTAGTTTGGAGAGT---GACCCTCTGCATCGTGAGCAGCCAGAGTATCTgttagtatgctcagggtcagattgacacagctgcctctgcagGGACCAAC #### Ccdc88b_ID1833_16 --> 1 - 0 Original Alignment gTACCGGCATCTG-GAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtagtaaggactgggtgttaagtccttgttttttcttctgccttctaggTACCGGCATCTGCGAGCAGCGTCTAGAAGCCGAGCTGCAGGCAACATCTGCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGTACGAGCCTTGCAGTTGGAGGAGGAGCTCATCGAGgtaagtctgcctgatacaaaagggctggcaaccttctacaatccatcaag Alignment from CESAR gTACCGGCATCTG-GAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtagtaaggactgggtgttaagtccttgttttttcttctgccttctaggTACCGGCATCTGCGAGCAGCGTCTAGAAGCCGAGCTGCAGGCAACATCTGCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGTACGAGCCTTGCAGTTGGAGGAGGAGCTCATCGAGgtaagtctgcctgatacaaaagggctggcaaccttctacaatccatcaag Alignment from Spaln_aa2Genome GTACCGGCATCTG-GAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtagtaaggactgggtgttaagtccttgttttttcttctgccttctagGTACCGGCATCTGcGAGCAGCGTCTAGAAGCCGAGCTGCAGGCAACATCTGCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGTACGAGCCTTGCAGTTGGAGGAGGAGCTCATCGAGgtaagtctgcctgatacaaaagggctggcaaccttctacaatccatcaag Alignment from Spaln_nt2Genome GTACCGGCATCTG-GAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtagtaaggactgggtgttaagtccttgttttttcttctgccttctagGTACCGGCATCTGCGAGCAGCGTCTAGAAGCCGAGCTGCAGGCAACATCTGCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGTACGAGCCTTGCAGTTGGAGGAGGAGCTCATCGAGgtaagtctgcctgatacaaaagggctggcaaccttctacaatccatcaag Alignment from Pairagon GTACCGGCATCTG-GAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtagtaaggactgggtgttaagtccttgttttttcttctgccttctagGTACCGGCATCTGCGAGCAGCGTCTAGAAGCCGAGCTGCAGGCAACATCTGCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGTACGAGCCTTGCAGTTGGAGGAGGAGCTCATCGAGgtaagtctgcctgatacaaaagggctggcaaccttctacaatccatcaag Alignment from Exonerate_protein2genome GTACCGGCATCTG-GAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtagtaaggactgggtgttaagtccttgttttttcttctgccttctagGTACCGGCATCTGCGAGCAGCGTCTAGAAGCCGAGCTGCAGGCAACATCTGCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGTACGAGCCTTGCAGTTGGAGGAGGAGCTCATCGAGgtaagtctgcctgatacaaaagggctggcaaccttctacaatccatcaag Alignment from Exonerate_coding2genome GTACCGGCATCTG-GAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtagtaaggactgggtgttaagtccttgttttttcttctgccttctagGTACCGGCATCTGCGAGCAGCGTCTAGAAGCCGAGCTGCAGGCAACATCTGCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGTACGAGCCTTGCAGTTGGAGGAGGAGCTCATCGAGgtaagtctgcctgatacaaaagggctggcaaccttctacaatccatcaag Alignment from GeneWise GTACCGGCAT-CTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAGCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtagtaaggactgggtgttaagtccttgttttttcttctgccttctagGTACCGGCATCTGCGAGCAGCGTCTAGAAGCCGAGCTGCAGGCAACATCTGCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGTACGAGCCTTGCAGTTGGAGGAGGAGCTCATCGAGgtaagtctgcctgatacaaaagggctggcaaccttctacaatccatcaag #### Ccdc88b_ID1836_13 --> 2 - 0 Original Alignment ccTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGG-GAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG aggagtgggagaggatgaacagacagaagccacacctctcctgtccccagcaTCCCTTCCTGGACCAGCACCCTCACTGCAAGATGAGGTGAGGCAAAGCAGAGGGTGGGAGACTTAGGGCAGTGGAGCGGGAAAACCGGGAGCTTCGAGGTCAA---CGTATGCTTCAGGCACGGCTTGGCAGCCAGgtgagttcctccagtattcttattttccatatgtcccttgtttccaagtc Alignment from CESAR ccTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGG-GAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG aggagtgggagaggatgaacagacagaagccacacctctcctgtccccagcaTCCCTTCCTGGACCAGCACCCTCACTGCAAGATGAGGTGAGGCAAAGCAGAGGGTGGGAGACTTAGGGCAGTGGAGCGGGAAAACCGGGAGCTTCGAGGTCAA---CGTATGCTTCAGGCACGGCTTGGCAGCCAGgtgagttcctccagtattcttattttccatatgtcccttgtttccaagtc Alignment from Spaln_aa2Genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAA-GCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG aggagtgggagaggatgaacagacagaagccacacctctcctgtccccagCATCCCTTCCTGGACCAGCACCCTCACTGCAAGATGAGGTGAGGCAAaGCAGAGGGTGGGAGACTTAGGGCAGTGGAGCGGGAAAACCGGGAGCTTCGAGGTCAA---CGTATGCTTCAGGCACGGCTTGGCAGCCAGgtgagttcctccagtattcttattttccatatgtcccttgtttccaagtc Alignment from Spaln_nt2Genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAA-GCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG aggagtgggagaggatgaacagacagaagccacacctctcctgtccccagCATCCCTTCCTGGACCAGCACCCTCACTGCAAGATGAGGTGAGGCAAAGCAGAGGGTGGGAGACTTAGGGCAGTGGAGCGGGAAAACCGGGAGCTTCGAGGTCA---ACGTATGCTTCAGGCACGGCTTGGCAGCCAGgtgagttcctccagtattcttattttccatatgtcccttgtttccaagtc Alignment from Pairagon CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGG-GAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG aggagtgggagaggatgaacagacagaagccacacctctcctgtccccagCATCCCTTCCTGGACCAGCACCCTCACTGCAAGATGAGGTGAGGCAAAGCAGAGGGTGGGAGACTTAGGGCAGTGGAGCGGGAAAACCGGGAGCTTCGAGGTCA---ACGTATGCTTCAGGCACGGCTTGGCAGCCAGgtgagttcctccagtattcttattttccatatgtcccttgtttccaagtc Alignment from Exonerate_protein2genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAA-GCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG aggagtgggagaggatgaacagacagaagccacacctctcctgtccccagCATCCCTTCCTGGACCAGCACCCTCACTGCAAGATGAGGTGAGGCAAAGCAGAGGGTGGGAGACTTAGGGCAGTGGAGCGGGAAAACCGGGAGCTTCGAGGTCAA---CGTATGCTTCAGGCACGGCTTGGCAGCCAGgtgagttcctccagtattcttattttccatatgtcccttgtttccaagtc Alignment from Exonerate_coding2genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAA-GCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG aggagtgggagaggatgaacagacagaagccacacctctcctgtccccagCATCCCTTCCTGGACCAGCACCCTCACTGCAAGATGAGGTGAGGCAAAGCAGAGGGTGGGAGACTTAGGGCAGTGGAGCGGGAAAACCGGGAGCTTCGAGGTCAA---CGTATGCTTCAGGCACGGCTTGGCAGCCAGgtgagttcctccagtattcttattttccatatgtcccttgtttccaagtc Alignment from GeneWise CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGG-GAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG aggagtgggagaggatgaacagacagaagccacacctctcctgtccccagCATCCCTTCCTGGACCAGCACCCTCACTGCAAGATGAGGTGAGGCAAAGCAGAGGGTGGGAGACTTAGGGCAGTGGAGCGGGAAAACCGGGAGCTTCGAGGTCAA---CGTATGCTTCAGGCACGGCTTGGCAGCCAGgtgagttcctccagtattcttattttccatatgtcccttgtttccaagtc #### Ccdc88b_ID1837_12 --> 0 - 1 Original Alignment GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTG-GAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGg ggttaagcaagcttaatgaacaggacacctcatcttcccatttcttgaagGACCTGGACTCTCTGCGGCACCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGCGAACTTCAGAGAAGTCTGGAGCCACCCCCAGGTTCCCCTGGGGAGggtgaggtaggtctagggtaagggcaaggatctgggcaggaaggcagcctg Alignment from CESAR GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTG-GAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGg ggttaagcaagcttaatgaacaggacacctcatcttcccatttcttgaagGACCTGGACTCTCTGCGGCACCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGCGAACTTCAGAGAAGTCTGGAGCCACCCCCAGGTTCCCCTGGGGAGggtgaggtaggtctagggtaagggcaaggatctgggcaggaaggcagcctg Alignment from Spaln_aa2Genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTG-GAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaagcaagcttaatgaacaggacacctcatcttcccatttcttgaagGACCTGGACTCTCTGCGGCACCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGcGAACTTCAGAGAAGTCTGGAGCCACCCCCAGGTTCCCCTGGGGAGGgtgaggtaggtctagggtaagggcaaggatctgggcaggaaggcagcctg Alignment from Spaln_nt2Genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTG-GAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaagcaagcttaatgaacaggacacctcatcttcccatttcttgaagGACCTGGACTCTCTGCGGCACCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGCGAACTTCAGAGAAGTCTGGAGCCACCCCCAGGTTCCCCTGGGGAGGgtgaggtaggtctagggtaagggcaaggatctgggcaggaaggcagcctg Alignment from Pairagon GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTG-GAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaagcaagcttaatgaacaggacacctcatcttcccatttcttgaagGACCTGGACTCTCTGCGGCACCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGCGAACTTCAGAGAAGTCTGGAGCCACCCCCAGGTTCCCCTGGGGAGGgtgaggtaggtctagggtaagggcaaggatctgggcaggaaggcagcctg Alignment from Exonerate_protein2genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTG-GAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaagcaagcttaatgaacaggacacctcatcttcccatttcttgaagGACCTGGACTCTCTGCGGCACCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGCGAACTTCAGAGAAGTCTGGAGCCACCCCCAGGTTCCCCTGGGGAGGgtgaggtaggtctagggtaagggcaaggatctgggcaggaaggcagcctg Alignment from Exonerate_coding2genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTG-GAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaagcaagcttaatgaacaggacacctcatcttcccatttcttgaagGACCTGGACTCTCTGCGGCACCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGCGAACTTCAGAGAAGTCTGGAGCCACCCCCAGGTTCCCCTGGGGAGGgtgaggtaggtctagggtaagggcaaggatctgggcaggaaggcagcctg Alignment from GeneWise GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAG-CTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaagcaagcttaatgaacaggacacctcatcttcccatttcttgaagGACCTGGACTCTCTGCGGCACCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGCGAACTTCAGAGAAGTCTGGAGCCACCCCCAGGTTCCCCTGGGGAGGgtgaggtaggtctagggtaagggcaaggatctgggcaggaaggcagcctg #### Ccdc88b_ID1841_8 --> 0 - 2 Original Alignment CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCA-GCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGgt tgtaaagggggtttgtaacatgcttcttctttcactcatttccatcccagCGGTTGGCTGAACTGCTGCTGGAGCGGGAGCCACGACCACTTGCTGCTGCCTGAGGCTCCTGCCAATGCATCTGCGGAGGGTGTCTCCCACCATTTAGCTCTGCAGCTGACCAATGCTAAGGCCCAGCTGAGACGCCTGAGGCAGGAGgtgtgagtgtccaaaggcacattaaggggtcagtgagatcctgacaggttct Alignment from CESAR CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCA-GCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGgt tgtaaagggggtttgtaacatgcttcttctttcactcatttccatcccagCGGTTGGCTGAACTGCTGCTGGAGCGGGAGCCACGACCACTTGCTGCTGCCTGAGGCTCCTGCCAATGCATCTGCGGAGGGTGTCTCCCACCATTTAGCTCTGCAGCTGACCAATGCTAAGGCCCAGCTGAGACGCCTGAGGCAGGAGgtgtgagtgtccaaaggcacattaaggggtcagtgagatcctgacaggttct Alignment from Spaln_aa2Genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCA-GCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tgtaaagggggtttgtaacatgcttcttctttcactcatttccatcccagCGGTTGGCTGAACTGCTGCTGGAGCGGGAGCCAcGACCACTTGCTGCTGCCTGAGGCTCCTGCCAATGCATCTGCGGAGGGTGTCTCCCACCATTTAGCTCTGCAGCTGACCAATGCTAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGTgtgagtgtccaaaggcacattaaggggtcagtgagatcctgacaggttct Alignment from Spaln_nt2Genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCA-GCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tgtaaagggggtttgtaacatgcttcttctttcactcatttccatcccagCGGTTGGCTGAACTGCTGCTGGAGCGGGAGCCACGACCACTTGCTGCTGCCTGAGGCTCCTGCCAATGCATCTGCGGAGGGTGTCTCCCACCATTTAGCTCTGCAGCTGACCAATGCTAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGTgtgagtgtccaaaggcacattaaggggtcagtgagatcctgacaggttct Alignment from Pairagon CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCA-GCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tgtaaagggggtttgtaacatgcttcttctttcactcatttccatcccagCGGTTGGCTGAACTGCTGCTGGAGCGGGAGCCACGACCACTTGCTGCTGCCTGAGGCTCCTGCCAATGCATCTGCGGAGGGTGTCTCCCACCATTTAGCTCTGCAGCTGACCAATGCTAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGTgtgagtgtccaaaggcacattaaggggtcagtgagatcctgacaggttct Alignment from Exonerate_protein2genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCC-CACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tgtaaagggggtttgtaacatgcttcttctttcactcatttccatcccagCGGTTGGCTGAACTGCTGCTGGAGCGGGAGCCACGACCACTTGCTGCTGCCTGAGGCTCCTGCCAATGCATCTGCGGAGGGTGTCTCCCACCATTTAGCTCTGCAGCTGACCAATGCTAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGTgtgagtgtccaaaggcacattaaggggtcagtgagatcctgacaggttct Alignment from Exonerate_coding2genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCC-CACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tgtaaagggggtttgtaacatgcttcttctttcactcatttccatcccagCGGTTGGCTGAACTGCTGCTGGAGCGGGAGCCACGACCACTTGCTGCTGCCTGAGGCTCCTGCCAATGCATCTGCGGAGGGTGTCTCCCACCATTTAGCTCTGCAGCTGACCAATGCTAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGTgtgagtgtccaaaggcacattaaggggtcagtgagatcctgacaggttct Alignment from GeneWise CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCA-GCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tgtaaagggggtttgtaacatgcttcttctttcactcatttccatcccagCGGTTGGCTGAACTGCTGCTGGAGCGGGAGCCACGACCACTTGCTGCTGCCTGAGGCTCCTGCCAATGCATCTGCGGAGGGTGTCTCCCACCATTTAGCTCTGCAGCTGACCAATGCTAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGTgtgagtgtccaaaggcacattaaggggtcagtgagatcctgacaggttct #### Ccdc88b_ID1845_4 --> 0 - 1 Original Alignment GAGGAGCTACAGCTGCTGATCCTATCACCA-CCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAg ggcccagaagcacctattatgatatcttttaccccggctctttattgcagGAGGAGCTACAGCTGCTAATCCTATCAGCACCCTCCAGACCTCCAGACTACAGGGTGCGAGCCCTTCTCAggtaactcttcctactctccttctgccattgttctctgccctatatcctta Alignment from CESAR GAGGAGCTACAGCTGCTGATCCTATCACCA-CCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAg ggcccagaagcacctattatgatatcttttaccccggctctttattgcagGAGGAGCTACAGCTGCTAATCCTATCAGCACCCTCCAGACCTCCAGACTACAGGGTGCGAGCCCTTCTCAggtaactcttcctactctccttctgccattgttctctgccctatatcctta Alignment from Spaln_aa2Genome GAGGAGCTACAGCTGCTGATCCTATCACCA-CCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG ggcccagaagcacctattatgatatcttttaccccggctctttattgcagGAGGAGCTACAGCTGCTAATCCTATCAGCAcCCTCCAGACCTCCAGACTACAGGGTGCGAGCCCTTCTCAGgtaactcttcctactctccttctgccattgttctctgccctatatcctta Alignment from Spaln_nt2Genome GAGGAGCTACAGCTGCTGATCCTATCACCAC-CTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG ggcccagaagcacctattatgatatcttttaccccggctctttattgcagGAGGAGCTACAGCTGCTAATCCTATCAGCACCCTCCAGACCTCCAGACTACAGGGTGCGAGCCCTTCTCAGgtaactcttcctactctccttctgccattgttctctgccctatatcctta Alignment from Pairagon GAGGAGCTACAGCTGCTGATCCTATCACCA-CCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG ggcccagaagcacctattatgatatcttttaccccggctctttattgcagGAGGAGCTACAGCTGCTAATCCTATCAGCACCCTCCAGACCTCCAGACTACAGGGTGCGAGCCCTTCTCAGgtaactcttcctactctccttctgccattgttctctgccctatatcctta Alignment from Exonerate_protein2genome GAGGAGCTACAGCTGCTGATCCTATCACCA-CCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG ggcccagaagcacctattatgatatcttttaccccggctctttattgcagGAGGAGCTACAGCTGCTAATCCTATCAGCACCCTCCAGACCTCCAGACTACAGGGTGCGAGCCCTTCTCAGgtaactcttcctactctccttctgccattgttctctgccctatatcctta Alignment from Exonerate_coding2genome GAGGAGCTACAGCTGCTGATCCTATCACCA-CCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG ggcccagaagcacctattatgatatcttttaccccggctctttattgcagGAGGAGCTACAGCTGCTAATCCTATCAGCACCCTCCAGACCTCCAGACTACAGGGTGCGAGCCCTTCTCAGgtaactcttcctactctccttctgccattgttctctgccctatatcctta Alignment from GeneWise GAGGAGCTACAGCTGCTGATCCTATCA-CCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG ggcccagaagcacctattatgatatcttttaccccggctctttattgcagGAGGAGCTACAGCTGCTAATCCTATCAGCACCCTCCAGACCTCCAGACTACAGGGTGCGAGCCCTTCTCAGgtaactcttcctactctccttctgccattgttctctgccctatatcctta #### Ccdc88b_ID1847_2 --> 0 - 2 Original Alignment GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTA-CTCCTTCGGGTGCTGGGCATCat cctggtattatgtgtttgccccccctcccttattcattttctcatcacagGCTCTGGGTTTGGCTGGGCTCGTGGGTGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACGGAGAAAAGATCCCTACGGCTGATTGATGGAGCCTTACCTCCTTCGGGTTTTAGGCATTatgtgagtgacacagggaagttgagttgggggggtggctatgaatgctagga Alignment from CESAR GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTA-CTCCTTCGGGTGCTGGGCATCat cctggtattatgtgtttgccccccctcccttattcattttctcatcacagGCTCTGGGTTTGGCTGGGCTCGTGGGTGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACGGAGAAAAGATCCCTACGGCTGATTGATGGAGCCTTACCTCCTTCGGGTTTTAGGCATTatgtgagtgacacagggaagttgagttgggggggtggctatgaatgctagga Alignment from Spaln_aa2Genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTA-CTCCTTCGGGTGCTGGGCATCAT cctggtattatgtgtttgccccccctcccttattcattttctcatcacagGCTCTGGGTTTGGCTGGGCTCGTGGGTGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACGGAGAAAAGATCCCTACGGCTGATTGATGGAGCCTTAcCTCCTTCGGGTTTTAGGCATTATgtgagtgacacagggaagttgagttgggggggtggctatgaatgctagga Alignment from Spaln_nt2Genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTAC-TCCTTCGGGTGCTGGGCATCAT cctggtattatgtgtttgccccccctcccttattcattttctcatcacagGCTCTGGGTTTGGCTGGGCTCGTGGGTGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACGGAGAAAAGATCCCTACGGCTGATTGATGGAGCCTTACCTCCTTCGGGTTTTAGGCATTATgtgagtgacacagggaagttgagttgggggggtggctatgaatgctagga Alignment from Pairagon GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTA-CTCCTTCGGGTGCTGGGCATCAT cctggtattatgtgtttgccccccctcccttattcattttctcatcacagGCTCTGGGTTTGGCTGGGCTCGTGGGTGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACGGAGAAAAGATCCCTACGGCTGATTGATGGAGCCTTACCTCCTTCGGGTTTTAGGCATTATgtgagtgacacagggaagttgagttgggggggtggctatgaatgctagga Alignment from Exonerate_protein2genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTA-CTCCTTCGGGTGCTGGGCATCAT cctggtattatgtgtttgccccccctcccttattcattttctcatcacagGCTCTGGGTTTGGCTGGGCTCGTGGGTGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACGGAGAAAAGATCCCTACGGCTGATTGATGGAGCCTTACCTCCTTCGGGTTTTAGGCATTATgtgagtgacacagggaagttgagttgggggggtggctatgaatgctagga Alignment from Exonerate_coding2genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTA-CTCCTTCGGGTGCTGGGCATCAT cctggtattatgtgtttgccccccctcccttattcattttctcatcacagGCTCTGGGTTTGGCTGGGCTCGTGGGTGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACGGAGAAAAGATCCCTACGGCTGATTGATGGAGCCTTACCTCCTTCGGGTTTTAGGCATTATgtgagtgacacagggaagttgagttgggggggtggctatgaatgctagga Alignment from GeneWise GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTA-CTCCTTCGGGTGCTGGGCATCAT cctggtattatgtgtttgccccccctcccttattcattttctcatcacagGCTCTGGGTTTGGCTGGGCTCGTGGGTGAGGCAGAAGAATCAGCAGGAGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACGGAGAAAAGATCCCTACGGCTGATTGATGGAGCCTTACCTCCTTCGGGTTTTAGGCATTATgtgagtgacacagggaagttgagttgggggggtggctatgaatgctagga #### Cd6_ID3013_11 --> 2 - 1 Original Alignment gaCTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGACCCCAGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCCC-AGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAg ccaccaggcctaaacagatagtcccactatattcattcctctttgttcagaaCTGGAAGAGCTGCATGTTTCCCACATCCCAGCAGCTGATCCCAGACCTTGTGTGGCCGATGTCCCCTCTCGGGGCTCACAGTACCATGTGAGTAACAATAGTGATTCCAGCACCTCA---------------TGCAATGATCCGCAGCAGCAAGCCACCTCCATGGAATTCCCAGGTGTTTTATTCTCAGAAGAGTCCCCTCACAGAGCAACCCCCCAATCTGGAACTGGCTGGCTCTCCAGCAGTCTTTTCAggtaaatgtgtgtccttccaggtcatcaactctctgtgtaaactactcacg Alignment from CESAR gaCTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGACCCCAGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCCC-AGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAg ccaccaggcctaaacagatagtcccactatattcattcctctttgttcagaaCTGGAAGAGCTGCATGTTTCCCACATCCCAGCAGCTGATCCCAGACCTTGTGTGGCCGATGTCCCCTCTCGGGGCTCACAGTACCATGTGAGTAACAATAGTGATTCCAGCACCTCA---------------TGCAATGATCCGCAGCAGCAAGCCACCTCCATGGAATTCCCAGGTGTTTTATTCTCAGAAGAGTCCCCTCACAGAGCAACCCCCCAATCTGGAACTGGCTGGCTCTCCAGCAGTCTTTTCAggtaaatgtgtgtccttccaggtcatcaactctctgtgtaaactactcacg Alignment from Spaln_aa2Genome GACTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGACCCCAGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCCC-AGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAG ccaccaggcctaaacagatagtcccactatattcattcctctttgttcagAACTGGAAGAGCTGCATGTTTCCCACATCCCAGCAGCTGATCCCAGACCTTGTGTGGCCGATGTCCCCTCTCGGGGCTCACAGTACCATGTGAGTAACAATAGTGATTCCAGCACCTCA---------------TGCAATGATCCGcAGCAGCAAGCCACCTCCATGGAATTCCCAGGTGTTTTATTCTCAGAAGAGTCCCCTCACAGAGCAACCCCCCAATCTGGAACTGGCTGGCTCTCCAGCAGTCTTTTCAGgtaaatgtgtgtccttccaggtcatcaactctctgtgtaaactactcacg Alignment from Spaln_nt2Genome GACTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGACCCCAGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCC-CAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAG ccaccaggcctaaacagatagtcccactatattcattcctctttgttcagAACTGGAAGAGCTGCATGTTTCCCACATCCCAGCAGCTGATCCCAGACCTTGTGTGGCCGATGTCCCCTCTCGGGGCTCACAGTACCATGTGAGTAACAATAGTGATTCCAGCACCTC---------------ATGCAATGATCCGCAGCAGCAAGCCACCTCCATGGAATTCCCAGGTGTTTTATTCTCAGAAGAGTCCCCTCACAGAGCAACCCCCCAATCTGGAACTGGCTGGCTCTCCAGCAGTCTTTTCAGgtaaatgtgtgtccttccaggtcatcaactctctgtgtaaactactcacg Alignment from Pairagon GACTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGACCCCAGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCC-CAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAG ccaccaggcctaaacagatagtcccactatattcattcctctttgttcagAACTGGAAGAGCTGCATGTTTCCCACATCCCAGCAGCTGATCCCAGACCTTGTGTGGCCGATGTCCCCTCTCGGGGCTCACAGTACCATGTGAGTAACAATAGTGATTCCAGCACCTC---------------ATGCAATGATCCGCAGCAGCAAGCCACCTCCATGGAATTCCCAGGTGTTTTATTCTCAGAAGAGTCCCCTCACAGAGCAACCCCCCAATCTGGAACTGGCTGGCTCTCCAGCAGTCTTTTCAGgtaaatgtgtgtccttccaggtcatcaactctctgtgtaaactactcacg Alignment from Exonerate_protein2genome GACTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGACCCCAGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCCC-AGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAG ccaccaggcctaaacagatagtcccactatattcattcctctttgttcagAACTGGAAGAGCTGCATGTTTCCCACATCCCAGCAGCTGATCCCAGACCTTGTGTGGCCGATGTCCCCTCTCGGGGCTCACAGTACCATGTGAGTAACAATAGTGATTCCAGCACCTCA---------------TGCAATGATCCGCAGCAGCAAGCCACCTCCATGGAATTCCCAGGTGTTTTATTCTCAGAAGAGTCCCCTCACAGAGCAACCCCCCAATCTGGAACTGGCTGGCTCTCCAGCAGTCTTTTCAGgtaaatgtgtgtccttccaggtcatcaactctctgtgtaaactactcacg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GACTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGACCCCAGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCCC-AGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAG ccaccaggcctaaacagatagtcccactatattcattcctctttgttcagAACTGGAAGAGCTGCATGTTTCCCACATCCCAGCAGCTGATCCCAGACCTTGTGTGGCCGATGTCCCCTCTCGGGGCTCACAGTACCATGTGAGTAACAATAGTGATTCCAGCACCTCA---------------TGCAATGATCCGCAGCAGCAAGCCACCTCCATGGAATTCCCAGGTGTTTTATTCTCAGAAGAGTCCCCTCACAGAGCAACCCCCCAATCTGGAACTGGCTGGCTCTCCAGCAGTCTTTTCAGgtaaatgtgtgtccttccaggtcatcaactctctgtgtaaactactcacg #### Cdc42bpg_ID1574_4 --> 0 - 0 Original Alignment ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCT-CTGCACTACGCCTTCCAGGATGAAGAGTACCTG gggcttgtctgacccgaaaacgtagccgaccatttttctttctcccatagACAACCTGTCTCCGGGAGGAGCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTCCTGCACTACACGTTCCAGGATGAGGAGTTCTTAgtaagtatccttggttagtagaggggcgttgcctagatagtgctattctt Alignment from CESAR ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCT-CTGCACTACGCCTTCCAGGATGAAGAGTACCTG gggcttgtctgacccgaaaacgtagccgaccatttttctttctcccatagACAACCTGTCTCCGGGAGGAGCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTCCTGCACTACACGTTCCAGGATGAGGAGTTCTTAgtaagtatccttggttagtagaggggcgttgcctagatagtgctattctt Alignment from Spaln_aa2Genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCT-CTGCACTACGCCTTCCAGGATGAAGAGTACCTG gggcttgtctgacccgaaaacgtagccgaccatttttctttctcccatagACAACCTGTCTCCGGGAGGAGCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTcCTGCACTACACGTTCCAGGATGAGGAGTTCTTAgtaagtatccttggttagtagaggggcgttgcctagatagtgctattctt Alignment from Spaln_nt2Genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCT-CTGCACTACGCCTTCCAGGATGAAGAGTACCTG gggcttgtctgacccgaaaacgtagccgaccatttttctttctcccatagACAACCTGTCTCCGGGAGGAGCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTCCTGCACTACACGTTCCAGGATGAGGAGTTCTTAgtaagtatccttggttagtagaggggcgttgcctagatagtgctattctt Alignment from Pairagon ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCT-CTGCACTACGCCTTCCAGGATGAAGAGTACCTG gggcttgtctgacccgaaaacgtagccgaccatttttctttctcccatagACAACCTGTCTCCGGGAGGAGCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTCCTGCACTACACGTTCCAGGATGAGGAGTTCTTAgtaagtatccttggttagtagaggggcgttgcctagatagtgctattctt Alignment from Exonerate_protein2genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCT-CTGCACTACGCCTTCCAGGATGAAGAGTACCTG gggcttgtctgacccgaaaacgtagccgaccatttttctttctcccatagACAACCTGTCTCCGGGAGGAGCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTCCTGCACTACACGTTCCAGGATGAGGAGTTCTTAgtaagtatccttggttagtagaggggcgttgcctagatagtgctattctt Alignment from Exonerate_coding2genome ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACTGCT-CTGCACTACGCCTTCCAGGATGAAGAGTACCTG gggcttgtctgacccgaaaacgtagccgaccatttttctttctcccatagACAACCTGTCTCCGGGAGGAGCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTCCTGCACTACACGTTCCAGGATGAGGAGTTCTTAgtaagtatccttggttagtagaggggcgttgcctagatagtgctattctt Alignment from GeneWise ACGGCCTGTTTCCGGGAGGAGCGAGATGTTCTAGTGAAGGGAGACAGCCGCTGGGTGACT-GCTCTGCACTACGCCTTCCAGGATGAAGAGTACCTG gggcttgtctgacccgaaaacgtagccgaccatttttctttctcccatagACAACCTGTCTCCGGGAGGAGCGAGATGTTTTAGTGAAGGGAGACCACTGTTGGGTGACAGCTCCTGCACTACACGTTCCAGGATGAGGAGTTCTTAgtaagtatccttggttagtagaggggcgttgcctagatagtgctattctt #### Cdc42bpg_ID1576_6 --> 1 - 0 Original Alignment gGATGTGAAGCCT-GACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG agcacacacgcacacctacaccaagcccacagttgtgtcctgcccagaagaGATGTGAAGCCACGACAACATTCTGCTGGACATGAATGGACAGCTTTGCCTTGCTGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATGgtgagtaaaccacctagaatttcacagacaagtgtagagacattgagttc Alignment from CESAR gGATGTGAAGCCT-GACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG agcacacacgcacacctacaccaagcccacagttgtgtcctgcccagaagaGATGTGAAGCCACGACAACATTCTGCTGGACATGAATGGACAGCTTTGCCTTGCTGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATGgtgagtaaaccacctagaatttcacagacaagtgtagagacattgagttc Alignment from Spaln_aa2Genome GGATGTGAAGCCT-GACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG agcacacacgcacacctacaccaagcccacagttgtgtcctgcccagaagAGATGTGAAGCCAcGACAACATTCTGCTGGACATGAATGGACAGCTTTGCCTTGCTGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATGgtgagtaaaccacctagaatttcacagacaagtgtagagacattgagttc Alignment from Spaln_nt2Genome GGATGTGAAGCCT-GACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG agcacacacgcacacctacaccaagcccacagttgtgtcctgcccagaagAGATGTGAAGCCACGACAACATTCTGCTGGACATGAATGGACAGCTTTGCCTTGCTGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATGgtgagtaaaccacctagaatttcacagacaagtgtagagacattgagttc Alignment from Pairagon GGATGTGAAGCC-TGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG agcacacacgcacacctacaccaagcccacagttgtgtcctgcccagaagAGATGTGAAGCCACGACAACATTCTGCTGGACATGAATGGACAGCTTTGCCTTGCTGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATGgtgagtaaaccacctagaatttcacagacaagtgtagagacattgagttc Alignment from Exonerate_protein2genome GGATGTGAAGCCT-GACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG agcacacacgcacacctacaccaagcccacagttgtgtcctgcccagaagAGATGTGAAGCCACGACAACATTCTGCTGGACATGAATGGACAGCTTTGCCTTGCTGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATGgtgagtaaaccacctagaatttcacagacaagtgtagagacattgagttc Alignment from Exonerate_coding2genome GGATGTGAAGCCT-GACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG agcacacacgcacacctacaccaagcccacagttgtgtcctgcccagaagAGATGTGAAGCCACGACAACATTCTGCTGGACATGAATGGACAGCTTTGCCTTGCTGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATGgtgagtaaaccacctagaatttcacagacaagtgtagagacattgagttc Alignment from GeneWise GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG agcacacacgcacacctacaccaagcccacagttgtgtcctgcccagaagagatgtgaagCCAC---------GACAACATTCTGCTGGACATGAATGGACAGCTTTGCCTTGCTGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATGgtgagtaaaccacctagaatttcacagacaagtgtagagacattgagttc #### Cdc42bpg_ID1577_7 --> 0 - 0 Original Alignment GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAG-GAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG cgctggcccagtgctgtggcctcacgatgtgacctgtggtcttgttgcagGTGGATTCATCAGTTGCTGTAGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGCGAAGGCAAGGGCCACTACGGACCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACTTACGGGAAGATCATGAACCATGAGgtgagcctgtatggcccagggaccccttcattgtggcattgctggttact Alignment from CESAR GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAG-GAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG cgctggcccagtgctgtggcctcacgatgtgacctgtggtcttgttgcagGTGGATTCATCAGTTGCTGTAGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGCGAAGGCAAGGGCCACTACGGACCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACTTACGGGAAGATCATGAACCATGAGgtgagcctgtatggcccagggaccccttcattgtggcattgctggttact Alignment from Spaln_aa2Genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAG-GAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG cgctggcccagtgctgtggcctcacgatgtgacctgtggtcttgttgcagGTGGATTCATCAGTTGCTGTAGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGcGAAGGCAAGGGCCACTACGGACCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACTTACGGGAAGATCATGAACCATGAGgtgagcctgtatggcccagggaccccttcattgtggcattgctggttact Alignment from Spaln_nt2Genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAG-GAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG cgctggcccagtgctgtggcctcacgatgtgacctgtggtcttgttgcagGTGGATTCATCAGTTGCTGTAGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGCGAAGGCAAGGGCCACTACGGACCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACTTACGGGAAGATCATGAACCATGAGgtgagcctgtatggcccagggaccccttcattgtggcattgctggttact Alignment from Pairagon GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAG-GAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG cgctggcccagtgctgtggcctcacgatgtgacctgtggtcttgttgcagGTGGATTCATCAGTTGCTGTAGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGCGAAGGCAAGGGCCACTACGGACCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACTTACGGGAAGATCATGAACCATGAGgtgagcctgtatggcccagggaccccttcattgtggcattgctggttact Alignment from Exonerate_protein2genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAG-GAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG cgctggcccagtgctgtggcctcacgatgtgacctgtggtcttgttgcagGTGGATTCATCAGTTGCTGTAGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGCGAAGGCAAGGGCCACTACGGACCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACTTACGGGAAGATCATGAACCATGAGgtgagcctgtatggcccagggaccccttcattgtggcattgctggttact Alignment from Exonerate_coding2genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAG-GAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG cgctggcccagtgctgtggcctcacgatgtgacctgtggtcttgttgcagGTGGATTCATCAGTTGCTGTAGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGCGAAGGCAAGGGCCACTACGGACCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACTTACGGGAAGATCATGAACCATGAGgtgagcctgtatggcccagggaccccttcattgtggcattgctggttact Alignment from GeneWise GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAG-GAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG cgctggcccagtgctgtggcctcacgatgtgacctgtggtcttgttgcagGTGGATTCATCAGTTGCTGTAGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGCGAAGGCAAGGGCCACTACGGACCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACTTACGGGAAGATCATGAACCATGAGgtgagcctgtatggcccagggaccccttcattgtggcattgctggttact #### Cdc42bpg_ID1581_11 --> 2 - 1 Original Alignment agCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTA-CAGGTTCTTCAGGAGAAACTGGCAg gtgttagaggcctggctaatctgtcagacccttatcctttttgtctccagagCCCCTGCATGGTCCATTACAACCACAGGAGCTCGTGCAGCTTCAGAAAGAAGTTCCAGGTTCTTCAGGAGAAACTGGCAggtgcgtgtggcatgttcctagaatagccaagctccttcccaagtcctagt Alignment from CESAR agCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTA-CAGGTTCTTCAGGAGAAACTGGCAg gtgttagaggcctggctaatctgtcagacccttatcctttttgtctccagagCCCCTGCATGGTCCATTACAACCACAGGAGCTCGTGCAGCTTCAGAAAGAAGTTCCAGGTTCTTCAGGAGAAACTGGCAggtgcgtgtggcatgttcctagaatagccaagctccttcccaagtcctagt Alignment from Spaln_aa2Genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTA-CAGGTTCTTCAGGAGAAACTGGCAG gtgttagaggcctggctaatctgtcagacccttatcctttttgtctccagAGCCCCTGCATGGTCCATTACAACCACAGGAGCTCGTGCAGCTTCAGAAAGAAGTTcCAGGTTCTTCAGGAGAAACTGGCAGgtgcgtgtggcatgttcctagaatagccaagctccttcccaagtcctagt Alignment from Spaln_nt2Genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTAC-AGGTTCTTCAGGAGAAACTGGCAG gtgttagaggcctggctaatctgtcagacccttatcctttttgtctccagAGCCCCTGCATGGTCCATTACAACCACAGGAGCTCGTGCAGCTTCAGAAAGAAGTTCCAGGTTCTTCAGGAGAAACTGGCAGgtgcgtgtggcatgttcctagaatagccaagctccttcccaagtcctagt Alignment from Pairagon AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAG-TACAGGTTCTTCAGGAGAAACTGGCAG gtgttagaggcctggctaatctgtcagacccttatcctttttgtctccagAGCCCCTGCATGGTCCATTACAACCACAGGAGCTCGTGCAGCTTCAGAAAGAAGTTCCAGGTTCTTCAGGAGAAACTGGCAGgtgcgtgtggcatgttcctagaatagccaagctccttcccaagtcctagt Alignment from Exonerate_protein2genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTA-CAGGTTCTTCAGGAGAAACTGGCAG gtgttagaggcctggctaatctgtcagacccttatcctttttgtctccagAGCCCCTGCATGGTCCATTACAACCACAGGAGCTCGTGCAGCTTCAGAAAGAAGTTCCAGGTTCTTCAGGAGAAACTGGCAGgtgcgtgtggcatgttcctagaatagccaagctccttcccaagtcctagt Alignment from Exonerate_coding2genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAAGTA-CAGGTTCTTCAGGAGAAACTGGCAG gtgttagaggcctggctaatctgtcagacccttatcctttttgtctccagAGCCCCTGCATGGTCCATTACAACCACAGGAGCTCGTGCAGCTTCAGAAAGAAGTTCCAGGTTCTTCAGGAGAAACTGGCAGgtgcgtgtggcatgttcctagaatagccaagctccttcccaagtcctagt Alignment from GeneWise AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAGGAA gtgttagaggcctggctaatctgtcagacccttatcctttttgtctccagAGCCCCTGCATGGTCCATTACAACCACAGGAGCTCGTGCAGCTTCAGAAAGAAgttccaggttcttcaggagaaactggcaggtgcgtgtggcatgttcctagaatagccaagctccttcccaagtcctagt #### Cdc42bpg_ID1584_14 --> 0 - 0 Original Alignment CTCGAAGGCCAGGTGACCACCCTGAGTCAG-GAGGTGACACGGCTCCAGGGACAATGTAAACAAGAATCTTCACAGGCCAAG ggtggacatttcctagtcccacattccctgacttttcttatttcatacagCTTGAAGGTCAGGTGACCACTCTGAGTCAGCGAGGTGACACGGCTGCAGGGACAATGTAAAGAAGAATCTTCACAGGCCAAGgtaagtttagtagctactctccactcagcacatctagtctcctacctaga Alignment from CESAR CTCGAAGGCCAGGTGACCACCCTGAGTCAG-GAGGTGACACGGCTCCAGGGACAATGTAAACAAGAATCTTCACAGGCCAAG ggtggacatttcctagtcccacattccctgacttttcttatttcatacagCTTGAAGGTCAGGTGACCACTCTGAGTCAGCGAGGTGACACGGCTGCAGGGACAATGTAAAGAAGAATCTTCACAGGCCAAGgtaagtttagtagctactctccactcagcacatctagtctcctacctaga Alignment from Spaln_aa2Genome CTCGAAGGCCAGGTGACCACCCTGAGTCAG-GAGGTGACACGGCTCCAGGGACAATGTAAACAAGAATCTTCACAGGCCAAG ggtggacatttcctagtcccacattccctgacttttcttatttcatacagCTTGAAGGTCAGGTGACCACTCTGAGTCAGcGAGGTGACACGGCTGCAGGGACAATGTAAAGAAGAATCTTCACAGGCCAAGgtaagtttagtagctactctccactcagcacatctagtctcctacctaga Alignment from Spaln_nt2Genome CTCGAAGGCCAGGTGACCACCCTGAGTCAG-GAGGTGACACGGCTCCAGGGACAATGTAAACAAGAATCTTCACAGGCCAAG ggtggacatttcctagtcccacattccctgacttttcttatttcatacagCTTGAAGGTCAGGTGACCACTCTGAGTCAGCGAGGTGACACGGCTGCAGGGACAATGTAAAGAAGAATCTTCACAGGCCAAGgtaagtttagtagctactctccactcagcacatctagtctcctacctaga Alignment from Pairagon CTCGAAGGCCAGGTGACCACCCTGAGTCAG-GAGGTGACACGGCTCCAGGGACAATGTAAACAAGAATCTTCACAGGCCAAG ggtggacatttcctagtcccacattccctgacttttcttatttcatacagCTTGAAGGTCAGGTGACCACTCTGAGTCAGCGAGGTGACACGGCTGCAGGGACAATGTAAAGAAGAATCTTCACAGGCCAAGgtaagtttagtagctactctccactcagcacatctagtctcctacctaga Alignment from Exonerate_protein2genome CTCGAAGGCCAGGTGACCACCCTGAGTCAG-GAGGTGACACGGCTCCAGGGACAATGTAAACAAGAATCTTCACAGGCCAAG ggtggacatttcctagtcccacattccctgacttttcttatttcatacagCTTGAAGGTCAGGTGACCACTCTGAGTCAGCGAGGTGACACGGCTGCAGGGACAATGTAAAGAAGAATCTTCACAGGCCAAGgtaagtttagtagctactctccactcagcacatctagtctcctacctaga Alignment from Exonerate_coding2genome CTCGAAGGCCAGGTGACCACCCTGAGTCAG-GAGGTGACACGGCTCCAGGGACAATGTAAACAAGAATCTTCACAGGCCAAG ggtggacatttcctagtcccacattccctgacttttcttatttcatacagCTTGAAGGTCAGGTGACCACTCTGAGTCAGCGAGGTGACACGGCTGCAGGGACAATGTAAAGAAGAATCTTCACAGGCCAAGgtaagtttagtagctactctccactcagcacatctagtctcctacctaga Alignment from GeneWise CTCGAAGGCCAGGTGACCACCCTGAGTCAG-GAGGTGACACGGCTCCAGGGACAATGTAAACAAGAATCTTCACAGGCCAAG ggtggacatttcctagtcccacattccctgacttttcttatttcatacagCTTGAAGGTCAGGTGACCACTCTGAGTCAGCGAGGTGACACGGCTGCAGGGACAATGTAAAGAAGAATCTTCACAGGCCAAGgtaagtttagtagctactctccactcagcacatctagtctcctacctaga #### Cdc42bpg_ID1586_16 --> 1 - 0 Original Alignment gATCAGTGTTGGGAAAGAGGAG-GTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG ggcaaggtcagcctgggattcagctctactccccgaattccctctggcagaATCAGTGTTGGGAAAGAGGAGCGTTCTATGCCGATTGCAGGAGGTAAACCAGCAGCTGAGTCGGGAGCAGGAGTGGgtgtgtatgaaatatgacaaagcacaggttagttgccagccaggtgggtt Alignment from CESAR gATCAGTGTTGGGAAAGAGGAG-GTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG ggcaaggtcagcctgggattcagctctactccccgaattccctctggcagaATCAGTGTTGGGAAAGAGGAGCGTTCTATGCCGATTGCAGGAGGTAAACCAGCAGCTGAGTCGGGAGCAGGAGTGGgtgtgtatgaaatatgacaaagcacaggttagttgccagccaggtgggtt Alignment from Spaln_aa2Genome GATCAGTGTTGGGAAAGAGGAG-GTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG ggcaaggtcagcctgggattcagctctactccccgaattccctctggcagAATCAGTGTTGGGAAAGAGGAGcGTTCTATGCCGATTGCAGGAGGTAAACCAGCAGCTGAGTCGGGAGCAGGAGTGGgtgtgtatgaaatatgacaaagcacaggttagttgccagccaggtgggtt Alignment from Spaln_nt2Genome GATCAGTGTTGGGAAAGAGGAG-GTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG ggcaaggtcagcctgggattcagctctactccccgaattccctctggcagAATCAGTGTTGGGAAAGAGGAGCGTTCTATGCCGATTGCAGGAGGTAAACCAGCAGCTGAGTCGGGAGCAGGAGTGGgtgtgtatgaaatatgacaaagcacaggttagttgccagccaggtgggtt Alignment from Pairagon ---------------------------------------------------ATCAGTGTTGGGAAAGAGGAG-GTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG GGCAAGGTCAGCCTGGGATTCAGCTCTACTCCCCGAATTCCCTCTGGCAGAATCAGTGTTGGGAAAGAGGAGCGTTCTATGCCGATTGCAGGAGGTAAACCAGCAGCTGAGTCGGGAGCAGGAGTGGgtgtgtatgaaatatgacaaagcacaggttagttgccagccaggtgggtt Alignment from Exonerate_protein2genome GATCAGTGTTGGGAAAGAGGAG-GTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG ggcaaggtcagcctgggattcagctctactccccgaattccctctggcagAATCAGTGTTGGGAAAGAGGAGCGTTCTATGCCGATTGCAGGAGGTAAACCAGCAGCTGAGTCGGGAGCAGGAGTGGgtgtgtatgaaatatgacaaagcacaggttagttgccagccaggtgggtt Alignment from Exonerate_coding2genome GATCAGTGTTGGGAAAGAGGAG-GTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG ggcaaggtcagcctgggattcagctctactccccgaattccctctggcagAATCAGTGTTGGGAAAGAGGAGCGTTCTATGCCGATTGCAGGAGGTAAACCAGCAGCTGAGTCGGGAGCAGGAGTGGgtgtgtatgaaatatgacaaagcacaggttagttgccagccaggtgggtt Alignment from GeneWise GATCAGTGTTGGGAAAGAGGAG-GTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG ggcaaggtcagcctgggattcagctctactccccgaattccctctggcagAATCAGTGTTGGGAAAGAGGAGCGTTCTATGCCGATTGCAGGAGGTAAACCAGCAGCTGAGTCGGGAGCAGGAGTGGgtgtgtatgaaatatgacaaagcacaggttagttgccagccaggtgggtt #### Cdc42bpg_ID1587_17 --> 0 - 2 Original Alignment CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAAC-TGGGAGGCTCAGATCGCTGACATCCTCAGCtg gggctataaggagcattgaggactaatcatgtgaggctgtctctctgcagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGAGCAAGCAACGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACCTGGGAGGCTCAGATCGCTGACATCCTCAGCtggtgagaatacacagccaggtggcacctctgatactgaggacccaggtcac Alignment from CESAR CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAAC-TGGGAGGCTCAGATCGCTGACATCCTCAGCtg gggctataaggagcattgaggactaatcatgtgaggctgtctctctgcagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGAGCAAGCAACGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACCTGGGAGGCTCAGATCGCTGACATCCTCAGCtggtgagaatacacagccaggtggcacctctgatactgaggacccaggtcac Alignment from Spaln_aa2Genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAAC-TGGGAGGCTCAGATCGCTGACATCCTCAGCTG gggctataaggagcattgaggactaatcatgtgaggctgtctctctgcagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGAGCAAGCAACGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACcTGGGAGGCTCAGATCGCTGACATCCTCAGCTGgtgagaatacacagccaggtggcacctctgatactgaggacccaggtcac Alignment from Spaln_nt2Genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAA-CTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gggctataaggagcattgaggactaatcatgtgaggctgtctctctgcagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGAGCAAGCAACGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACCTGGGAGGCTCAGATCGCTGACATCCTCAGCTGgtgagaatacacagccaggtggcacctctgatactgaggacccaggtcac Alignment from Pairagon CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAA-CTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gggctataaggagcattgaggactaatcatgtgaggctgtctctctgcagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGAGCAAGCAACGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACCTGGGAGGCTCAGATCGCTGACATCCTCAGCTGgtgagaatacacagccaggtggcacctctgatactgaggacccaggtcac Alignment from Exonerate_protein2genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAAC-TGGGAGGCTCAGATCGCTGACATCCTCAGCTG gggctataaggagcattgaggactaatcatgtgaggctgtctctctgcagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGAGCAAGCAACGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACCTGGGAGGCTCAGATCGCTGACATCCTCAGCTGgtgagaatacacagccaggtggcacctctgatactgaggacccaggtcac Alignment from Exonerate_coding2genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAAC-TGGGAGGCTCAGATCGCTGACATCCTCAGCTG gggctataaggagcattgaggactaatcatgtgaggctgtctctctgcagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGAGCAAGCAACGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACCTGGGAGGCTCAGATCGCTGACATCCTCAGCTGgtgagaatacacagccaggtggcacctctgatactgaggacccaggtcac Alignment from GeneWise CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAGACTGAGAGC-AACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG gggctataaggagcattgaggactaatcatgtgaggctgtctctctgcagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGAGCAAGCAACGTTTGGAGGGTGAACGGCGGGAGACTGAGAGCAACCTGGGAGGCTCAGATCGCTGACATCCTCAGCTGgtgagaatacacagccaggtggcacctctgatactgaggacccaggtcac #### Cdc42bpg_ID1592_22 --> 0 - 0 Original Alignment AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGC-AGTCTGCGCATGGGG ctggtgagaaacataaaccctgaccttcccttctctttcttggtttccagAAGGATTCTGCTAAAGACCCTGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCTGAAGCAGAGCTTAGGCCAGAGGGCCGCCGCCAGTCTGCGCATGGGGgtgagaccctgtaccaagccggaataaagataggtgggatttctactgca Alignment from CESAR AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGC-AGTCTGCGCATGGGG ctggtgagaaacataaaccctgaccttcccttctctttcttggtttccagAAGGATTCTGCTAAAGACCCTGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCTGAAGCAGAGCTTAGGCCAGAGGGCCGCCGCCAGTCTGCGCATGGGGgtgagaccctgtaccaagccggaataaagataggtgggatttctactgca Alignment from Spaln_aa2Genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGC-AGTCTGCGCATGGGG ctggtgagaaacataaaccctgaccttcccttctctttcttggtttccagAAGGATTCTGCTAAAGACCCTGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCTGAAGCAGAGCTTAGGCCAGAGGGCCGCCGCcAGTCTGCGCATGGGGgtgagaccctgtaccaagccggaataaagataggtgggatttctactgca Alignment from Spaln_nt2Genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCG-CAGTCTGCGCATGGGG ctggtgagaaacataaaccctgaccttcccttctctttcttggtttccagAAGGATTCTGCTAAAGACCCTGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCTGAAGCAGAGCTTAGGCCAGAGGGCCGCCGCCAGTCTGCGCATGGGGgtgagaccctgtaccaagccggaataaagataggtgggatttctactgca Alignment from Pairagon AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCG-CAGTCTGCGCATGGGG ctggtgagaaacataaaccctgaccttcccttctctttcttggtttccagAAGGATTCTGCTAAAGACCCTGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCTGAAGCAGAGCTTAGGCCAGAGGGCCGCCGCCAGTCTGCGCATGGGGgtgagaccctgtaccaagccggaataaagataggtgggatttctactgca Alignment from Exonerate_protein2genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGC-AGTCTGCGCATGGGG ctggtgagaaacataaaccctgaccttcccttctctttcttggtttccagAAGGATTCTGCTAAAGACCCTGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCTGAAGCAGAGCTTAGGCCAGAGGGCCGCCGCCAGTCTGCGCATGGGGgtgagaccctgtaccaagccggaataaagataggtgggatttctactgca Alignment from Exonerate_coding2genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGC-AGTCTGCGCATGGGG ctggtgagaaacataaaccctgaccttcccttctctttcttggtttccagAAGGATTCTGCTAAAGACCCTGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCTGAAGCAGAGCTTAGGCCAGAGGGCCGCCGCCAGTCTGCGCATGGGGgtgagaccctgtaccaagccggaataaagataggtgggatttctactgca Alignment from GeneWise AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCAGAGGGCCGCCGC------------------------------------AGTCTGCGCATGGGG--------------- ctggtgagaaacataaaccctgaccttcccttctctttcttggtttccagAAGGATTCTGCTAAAGACCCTGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCTGAAGCAGAGCTTAGGCCAGAGGGCCGCCGCCAGTCTGCGCATGGGGGTGAGACCCTGTACCAAGCCGGAATAAAGATAGGTGGGATTTCTACTGCA #### Cdc42bpg_ID1596_26 --> 0 - 2 Original Alignment GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGT-GACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAag gctgtgggaatgagtgccagtccagccctttcttgggggtggggaaacagGTGCGACAGCCATCATGCGTTCGTTGGGACTGGCAGCGGGTGTATGCTGCACTCAGTCGATTCCCGTTTGTTATTGTTTGATGCTCCTGACCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTAGATCTAaggtaagagacagtcacacaggacatgagaagttcaagccagggtggtatct Alignment from CESAR GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGT-GACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAag gctgtgggaatgagtgccagtccagccctttcttgggggtggggaaacagGTGCGACAGCCATCATGCGTTCGTTGGGACTGGCAGCGGGTGTATGCTGCACTCAGTCGATTCCCGTTTGTTATTGTTTGATGCTCCTGACCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTAGATCTAaggtaagagacagtcacacaggacatgagaagttcaagccagggtggtatct Alignment from Spaln_aa2Genome GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGT-GACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG gctgtgggaatgagtgccagtccagccctttcttgggggtggggaaacagGTGCGACAGCCATCATGCGTTCGTTGGGACTGGCAGCGGGTGTATGCTGCACTCAGTcGATTCCCGTTTGTTATTGTTTGATGCTCCTGACCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTAGATCTAAGgtaagagacagtcacacaggacatgagaagttcaagccagggtggtatct Alignment from Spaln_nt2Genome GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGT-GACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG gctgtgggaatgagtgccagtccagccctttcttgggggtggggaaacagGTGCGACAGCCATCATGCGTTCGTTGGGACTGGCAGCGGGTGTATGCTGCACTCAGTCGATTCCCGTTTGTTATTGTTTGATGCTCCTGACCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTAGATCTAAGgtaagagacagtcacacaggacatgagaagttcaagccagggtggtatct Alignment from Pairagon -------------------------------------------------GGTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGT-GACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG GCTGTGGGAATGAGTGCCAGTCCAGCCCTTTCTTGGGGGTGGGGAAACAGGTGCGACAGCCATCATGCGTTCGTTGGGACTGGCAGCGGGTGTATGCTGCACTCAGTCGATTCCCGTTTGTTATTGTTTGATGCTCCTGACCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTAGATCTAAGgtaagagacagtcacacaggacatgagaagttcaagccagggtggtatct Alignment from Exonerate_protein2genome GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGT-GACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG gctgtgggaatgagtgccagtccagccctttcttgggggtggggaaacagGTGCGACAGCCATCATGCGTTCGTTGGGACTGGCAGCGGGTGTATGCTGCACTCAGTCGATTCCCGTTTGTTATTGTTTGATGCTCCTGACCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTAGATCTAAGgtaagagacagtcacacaggacatgagaagttcaagccagggtggtatct Alignment from Exonerate_coding2genome GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGT-GACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG gctgtgggaatgagtgccagtccagccctttcttgggggtggggaaacagGTGCGACAGCCATCATGCGTTCGTTGGGACTGGCAGCGGGTGTATGCTGCACTCAGTCGATTCCCGTTTGTTATTGTTTGATGCTCCTGACCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTAGATCTAAGgtaagagacagtcacacaggacatgagaagttcaagccagggtggtatct Alignment from GeneWise --------------------------------------------------------CGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTC-AGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGGTCCTCCTGCAGGCCTTGGATCTAAG GCTGTGGGAATGAGTGCCAGTCCAGCCCTTTCTTGGGGGTGGGGAAACAGGTGCGACAGCCATCATGCGTTCGTTGGGACTGGCAGCGGGTGTATGCTGCACTCAGTCGATTCCCGTTTGTTATTGTTTGATGCTCCTGACCCTCGTGGAAGCCTGGCCAGTGGGATCCTCCTGCAGGCCTTAGATCTAAGgtaagagacagtcacacaggacatgagaagttcaagccagggtggtatct #### Cdc42bpg_ID1597_27 --> 1 - 0 Original Alignment gGACCCCCAGTTC-TCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcaagccagggtggtatctcaaccctcttttgcctctttcaggGACCCCCAGTTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGGgtaagtgctcagggtgagatggcccatcctccatatctccacctgtgctt Alignment from CESAR gGACCCCCAG-TTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcaagccagggtggtatctcaaccctcttttgcctctttcaggGACCCCCAGTTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGGgtaagtgctcagggtgagatggcccatcctccatatctccacctgtgctt Alignment from Spaln_aa2Genome GGACCCCCAG-TTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcaagccagggtggtatctcaaccctcttttgcctctttcagGGACCCCCAGtTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGGgtaagtgctcagggtgagatggcccatcctccatatctccacctgtgctt Alignment from Spaln_nt2Genome GGACCCCCAGTT-CTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcaagccagggtggtatctcaaccctcttttgcctctttcagGGACCCCCAGTTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGGgtaagtgctcagggtgagatggcccatcctccatatctccacctgtgctt Alignment from Pairagon GGACCCCCAG-TTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcaagccagggtggtatctcaaccctcttttgcctctttcagGGACCCCCAGTTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGGgtaagtgctcagggtgagatggcccatcctccatatctccacctgtgctt Alignment from Exonerate_protein2genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcaagccagggtggtatctcaaccctcttttgcctctttcaggGACCCCCAGTTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGGgtaagtgctcagggtgagatggcccatcctccatatctccacctgtgctt Alignment from Exonerate_coding2genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcaagccagggtggtatctcaaccctcttttgcctctttcaggGACCCCCAGTTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGGgtaagtgctcagggtgagatggcccatcctccatatctccacctgtgctt Alignment from GeneWise GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgagaagttcaagccagggtggtatctcaaccctcttttgcctctttcagggacccccagT---------TTCTCAGCCACCCCTGTCTTGGCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGGgtaagtgctcagggtgagatggcccatcctccatatctccacctgtgctt #### Cdc42bpg_ID1603_33 --> 2 - 2 Original Alignment agAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAG-CGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCag aaggcccactgttacaagtgaacagctccctctcccttcaccatcttcagaaAAGGATGAGTTTGAGATTCCTGACCTGACAGACAACAGCCGGCGCCAGCTCTTCCGCAGCAAGAGCAAGCCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAGCAGCGTaggtaggtagctgtgttgtgggtctagctactgggtgggactttcctattct Alignment from CESAR agAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAG-CGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCag aaggcccactgttacaagtgaacagctccctctcccttcaccatcttcagaaAAGGATGAGTTTGAGATTCCTGACCTGACAGACAACAGCCGGCGCCAGCTCTTCCGCAGCAAGAGCAAGCCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAGCAGCGTaggtaggtagctgtgttgtgggtctagctactgggtgggactttcctattct Alignment from Spaln_aa2Genome AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAG-CGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG aaggcccactgttacaagtgaacagctccctctcccttcaccatcttcagAAAAGGATGAGTTTGAGATTCCTGACCTGACAGACAACAGCCGGCGCCAGCTCTTCCGCAGCAAGAGCAAGcCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAGCAGCGTAGgtaggtagctgtgttgtgggtctagctactgggtgggactttcctattct Alignment from Spaln_nt2Genome AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAG-CGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG aaggcccactgttacaagtgaacagctccctctcccttcaccatcttcagAAAAGGATGAGTTTGAGATTCCTGACCTGACAGACAACAGCCGGCGCCAGCTCTTCCGCAGCAAGAGCAAGCCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAGCAGCGTAGgtaggtagctgtgttgtgggtctagctactgggtgggactttcctattct Alignment from Pairagon AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAG-CGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG aaggcccactgttacaagtgaacagctccctctcccttcaccatcttcagAAAAGGATGAGTTTGAGATTCCTGACCTGACAGACAACAGCCGGCGCCAGCTCTTCCGCAGCAAGAGCAAGCCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAGCAGCGTAGgtaggtagctgtgttgtgggtctagctactgggtgggactttcctattct Alignment from Exonerate_protein2genome AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAG-CGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG aaggcccactgttacaagtgaacagctccctctcccttcaccatcttcagAAAAGGATGAGTTTGAGATTCCTGACCTGACAGACAACAGCCGGCGCCAGCTCTTCCGCAGCAAGAGCAAGCCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAGCAGCGTAGgtaggtagctgtgttgtgggtctagctactgggtgggactttcctattct Alignment from Exonerate_coding2genome AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAG-CGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG aaggcccactgttacaagtgaacagctccctctcccttcaccatcttcagAAAAGGATGAGTTTGAGATTCCTGACCTGACAGACAACAGCCGGCGCCAGCTCTTCCGCAGCAAGAGCAAGCCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAGCAGCGTAGgtaggtagctgtgttgtgggtctagctactgggtgggactttcctattct Alignment from GeneWise AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGC-AAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG aaggcccactgttacaagtgaacagctccctctcccttcaccatcttcagAAAAGGATGAGTTTGAGATTCCTGACCTGACAGACAACAGCCGGCGCCAGCTCTTCCGCAGCAAGAGCAAGCCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAGCAGCGTAGgtaggtagctgtgttgtgggtctagctactgggtgggactttcctattct #### Cfl1_ID1061_3 --> 1 - 1 Original Alignment gGCCCCCGAGAATGCACCCCTCAAGAGC-AAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAg ttgagactattctggatgtagttgcagcatctgtttgaaaactatctcaggGCCCCTGAAAATGCACCCCTAAAGAGCCAAAATGATCTATGCAAGCTCCAAGGATGCCATCAAGAGGAAGCTGACAggtaagcatccccccttccaacaaaaacaattggtgtagtctccctgctag Alignment from CESAR gGCCCCCGAGAATGCACCCCTCAAGAGC-AAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAg ttgagactattctggatgtagttgcagcatctgtttgaaaactatctcaggGCCCCTGAAAATGCACCCCTAAAGAGCCAAAATGATCTATGCAAGCTCCAAGGATGCCATCAAGAGGAAGCTGACAggtaagcatccccccttccaacaaaaacaattggtgtagtctccctgctag Alignment from Spaln_aa2Genome GGCCCCCGAGAATGCACCCCTCAAGAGC-AAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG ttgagactattctggatgtagttgcagcatctgtttgaaaactatctcagGGCCCCTGAAAATGCACCCCTAAAGAGCcAAAATGATCTATGCAAGCTCCAAGGATGCCATCAAGAGGAAGCTGACAGgtaagcatccccccttccaacaaaaacaattggtgtagtctccctgctag Alignment from Spaln_nt2Genome GGCCCCCGAGAATGCACCCCTCAAGAGC-AAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG ttgagactattctggatgtagttgcagcatctgtttgaaaactatctcagGGCCCCTGAAAATGCACCCCTAAAGAGCCAAAATGATCTATGCAAGCTCCAAGGATGCCATCAAGAGGAAGCTGACAGgtaagcatccccccttccaacaaaaacaattggtgtagtctccctgctag Alignment from Pairagon GGCCCCCGAGAATGCACCCCTCAAGAG-CAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG ttgagactattctggatgtagttgcagcatctgtttgaaaactatctcagGGCCCCTGAAAATGCACCCCTAAAGAGCCAAAATGATCTATGCAAGCTCCAAGGATGCCATCAAGAGGAAGCTGACAGgtaagcatccccccttccaacaaaaacaattggtgtagtctccctgctag Alignment from Exonerate_protein2genome GGCCCCCGAGAATGCACCCCTCAAGAGC-AAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG ttgagactattctggatgtagttgcagcatctgtttgaaaactatctcagGGCCCCTGAAAATGCACCCCTAAAGAGCCAAAATGATCTATGCAAGCTCCAAGGATGCCATCAAGAGGAAGCTGACAGgtaagcatccccccttccaacaaaaacaattggtgtagtctccctgctag Alignment from Exonerate_coding2genome GGCCCCCGAGAATGCACCCCTCAAGAGC-AAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG ttgagactattctggatgtagttgcagcatctgtttgaaaactatctcagGGCCCCTGAAAATGCACCCCTAAAGAGCCAAAATGATCTATGCAAGCTCCAAGGATGCCATCAAGAGGAAGCTGACAGgtaagcatccccccttccaacaaaaacaattggtgtagtctccctgctag Alignment from GeneWise GGCCCCCGAGAATGCACCCCTCAAG-AGCAAAATGATCTATGCCAGCTCCAAGGATGCCATCAAGAAGAAGCTGACAG ttgagactattctggatgtagttgcagcatctgtttgaaaactatctcagGGCCCCTGAAAATGCACCCCTAAAGAGCCAAAATGATCTATGCAAGCTCCAAGGATGCCATCAAGAGGAAGCTGACAGgtaagcatccccccttccaacaaaaacaattggtgtagtctccctgctag #### Chuk_ID8921_7 --> 0 - 2 Original Alignment GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGG-CCTTTTTTGCATCATCTGCAGCCATTTACCtg ttggatcttaatacaatttctattttatgtcttcttttgttataatgcagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCCTTTTTTGCATCATCTACAGCCATTTACCtggtaggtcatggtgagagctttagcgtatttcctggttgtggaagcagctg Alignment from CESAR GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGG-CCTTTTTTGCATCATCTGCAGCCATTTACCtg ttggatcttaatacaatttctattttatgtcttcttttgttataatgcagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCCTTTTTTGCATCATCTACAGCCATTTACCtggtaggtcatggtgagagctttagcgtatttcctggttgtggaagcagctg Alignment from Spaln_aa2Genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTT-TTGCATCATCTGCAGCCATTTACCTG ttggatcttaatacaatttctattttatgtcttcttttgttataatgcagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCCTTTtTTGCATCATCTACAGCCATTTACCTGgtaggtcatggtgagagctttagcgtatttcctggttgtggaagcagctg Alignment from Spaln_nt2Genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTT-TGCATCATCTGCAGCCATTTACCTG ttggatcttaatacaatttctattttatgtcttcttttgttataatgcagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCCTTTTTTGCATCATCTACAGCCATTTACCTGgtaggtcatggtgagagctttagcgtatttcctggttgtggaagcagctg Alignment from Pairagon GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGG-CCTTTTTTGCATCATCTGCAGCCATTTACCTG ttggatcttaatacaatttctattttatgtcttcttttgttataatgcagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCCTTTTTTGCATCATCTACAGCCATTTACCTGgtaggtcatggtgagagctttagcgtatttcctggttgtggaagcagctg Alignment from Exonerate_protein2genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGG-CCTTTTTTGCATCATCTGCAGCCATTTACCTG ttggatcttaatacaatttctattttatgtcttcttttgttataatgcagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCCTTTTTTGCATCATCTACAGCCATTTACCTGgtaggtcatggtgagagctttagcgtatttcctggttgtggaagcagctg Alignment from Exonerate_coding2genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGG-CCTTTTTTGCATCATCTGCAGCCATTTACCTG ttggatcttaatacaatttctattttatgtcttcttttgttataatgcagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCCTTTTTTGCATCATCTACAGCCATTTACCTGgtaggtcatggtgagagctttagcgtatttcctggttgtggaagcagctg Alignment from GeneWise GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTT-TTGCATCATCTGCAGCCATTTACCTG ttggatcttaatacaatttctattttatgtcttcttttgttataatgcagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCCTTTTTTGCATCATCTACAGCCATTTACCTGgtaggtcatggtgagagctttagcgtatttcctggttgtggaagcagctg #### Col17a1_ID10275_47 --> 2 - 1 Original Alignment ccGCTGGTTTGTCCTCCATCCCAGGCCCTCCA-GGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAa agcttctgtccaggctcctgtcctttctttccctccctctgtgcctccagccGCTGGTTTGTCCTCCATCCCAGGCCCAGCACGGCCCACCAGGACCACCGGGTCCTCGAGGGCCTCCAGGGGTTTCAACAGCTCTGTCTACCTATGCAGCTGAGAACAGCGATAACTTCCGGAGTGAGCTGATTAGCTACCTCACAagttggtacccttgatgtgtgccccctgtgcccctcccatagacttccaca Alignment from CESAR ccGCTGGTTTGTCCTCCATCCCAGGCCCTCCA-GGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAa agcttctgtccaggctcctgtcctttctttccctccctctgtgcctccagccGCTGGTTTGTCCTCCATCCCAGGCCCAGCACGGCCCACCAGGACCACCGGGTCCTCGAGGGCCTCCAGGGGTTTCAACAGCTCTGTCTACCTATGCAGCTGAGAACAGCGATAACTTCCGGAGTGAGCTGATTAGCTACCTCACAagttggtacccttgatgtgtgccccctgtgcccctcccatagacttccaca Alignment from Spaln_aa2Genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCA-GGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA agcttctgtccaggctcctgtcctttctttccctccctctgtgcctccagCCGCTGGTTTGTCCTCCATCCCAGGCCCAGCAcGGCCCACCAGGACCACCGGGTCCTCGAGGGCCTCCAGGGGTTTCAACAGCTCTGTCTACCTATGCAGCTGAGAACAGCGATAACTTCCGGAGTGAGCTGATTAGCTACCTCACAAgttggtacccttgatgtgtgccccctgtgcccctcccatagacttccaca Alignment from Spaln_nt2Genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCA-GGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA agcttctgtccaggctcctgtcctttctttccctccctctgtgcctccagCCGCTGGTTTGTCCTCCATCCCAGGCCCAGCACGGCCCACCAGGACCACCGGGTCCTCGAGGGCCTCCAGGGGTTTCAACAGCTCTGTCTACCTATGCAGCTGAGAACAGCGATAACTTCCGGAGTGAGCTGATTAGCTACCTCACAAgttggtacccttgatgtgtgccccctgtgcccctcccatagacttccaca Alignment from Pairagon CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCA-GGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA agcttctgtccaggctcctgtcctttctttccctccctctgtgcctccagCCGCTGGTTTGTCCTCCATCCCAGGCCCAGCACGGCCCACCAGGACCACCGGGTCCTCGAGGGCCTCCAGGGGTTTCAACAGCTCTGTCTACCTATGCAGCTGAGAACAGCGATAACTTCCGGAGTGAGCTGATTAGCTACCTCACAAgttggtacccttgatgtgtgccccctgtgcccctcccatagacttccaca Alignment from Exonerate_protein2genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCA-GGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA agcttctgtccaggctcctgtcctttctttccctccctctgtgcctccagCCGCTGGTTTGTCCTCCATCCCAGGCCCAGCACGGCCCACCAGGACCACCGGGTCCTCGAGGGCCTCCAGGGGTTTCAACAGCTCTGTCTACCTATGCAGCTGAGAACAGCGATAACTTCCGGAGTGAGCTGATTAGCTACCTCACAAgttggtacccttgatgtgtgccccctgtgcccctcccatagacttccaca Alignment from Exonerate_coding2genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCA-GGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA agcttctgtccaggctcctgtcctttctttccctccctctgtgcctccagCCGCTGGTTTGTCCTCCATCCCAGGCCCAGCACGGCCCACCAGGACCACCGGGTCCTCGAGGGCCTCCAGGGGTTTCAACAGCTCTGTCTACCTATGCAGCTGAGAACAGCGATAACTTCCGGAGTGAGCTGATTAGCTACCTCACAAgttggtacccttgatgtgtgccccctgtgcccctcccatagacttccaca Alignment from GeneWise CCGCTGGTTTGTCCTCCATCCCAGGCCCT-CCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA agcttctgtccaggctcctgtcctttctttccctccctctgtgcctccagCCGCTGGTTTGTCCTCCATCCCAGGCCCAGCACGGCCCACCAGGACCACCGGGTCCTCGAGGGCCTCCAGGGGTTTCAACAGCTCTGTCTACCTATGCAGCTGAGAACAGCGATAACTTCCGGAGTGAGCTGATTAGCTACCTCACAAgttggtacccttgatgtgtgccccctgtgcccctcccatagacttccaca #### Col17a1_ID10276_46 --> 2 - 1 Original Alignment gtTCTGGGATCAGCTTT-GGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAg cctaaacaagttgagcctaaaactatgccagcgctttgctctctatccaggtGCTGGCATCAGCTTTCGGACATCCTGGCCCACCTGGACCTCCTGGACTACCTGGAACATCCTATGAAGAGTTACTGTCCATGCTCCAAggtcagtcaaaagcaaaatgtccatcagctcaggatggaaactgaaacctg Alignment from CESAR gtTCTGGGATCAGCTTT-GGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAg cctaaacaagttgagcctaaaactatgccagcgctttgctctctatccaggtGCTGGCATCAGCTTTCGGACATCCTGGCCCACCTGGACCTCCTGGACTACCTGGAACATCCTATGAAGAGTTACTGTCCATGCTCCAAggtcagtcaaaagcaaaatgtccatcagctcaggatggaaactgaaacctg Alignment from Spaln_aa2Genome GTTCTGGGATCAGCTTT-GGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAG cctaaacaagttgagcctaaaactatgccagcgctttgctctctatccagGTGCTGGCATCAGCTTTcGGACATCCTGGCCCACCTGGACCTCCTGGACTACCTGGAACATCCTATGAAGAGTTACTGTCCATGCTCCAAGgtcagtcaaaagcaaaatgtccatcagctcaggatggaaactgaaacctg Alignment from Spaln_nt2Genome GTTCTGGGATCAGCTTTGGG-CATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAG cctaaacaagttgagcctaaaactatgccagcgctttgctctctatccagGTGCTGGCATCAGCTTTCGGACATCCTGGCCCACCTGGACCTCCTGGACTACCTGGAACATCCTATGAAGAGTTACTGTCCATGCTCCAAGgtcagtcaaaagcaaaatgtccatcagctcaggatggaaactgaaacctg Alignment from Pairagon GTTCTGGGATCAGCTTT-GGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAG cctaaacaagttgagcctaaaactatgccagcgctttgctctctatccagGTGCTGGCATCAGCTTTCGGACATCCTGGCCCACCTGGACCTCCTGGACTACCTGGAACATCCTATGAAGAGTTACTGTCCATGCTCCAAGgtcagtcaaaagcaaaatgtccatcagctcaggatggaaactgaaacctg Alignment from Exonerate_protein2genome GTTCTGGGATCAGC-TTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAG cctaaacaagttgagcctaaaactatgccagcgctttgctctctatccagGTGCTGGCATCAGCTTTCGGACATCCTGGCCCACCTGGACCTCCTGGACTACCTGGAACATCCTATGAAGAGTTACTGTCCATGCTCCAAGgtcagtcaaaagcaaaatgtccatcagctcaggatggaaactgaaacctg Alignment from Exonerate_coding2genome GTTCTGGGATCAGC-TTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAG cctaaacaagttgagcctaaaactatgccagcgctttgctctctatccagGTGCTGGCATCAGCTTTCGGACATCCTGGCCCACCTGGACCTCCTGGACTACCTGGAACATCCTATGAAGAGTTACTGTCCATGCTCCAAGgtcagtcaaaagcaaaatgtccatcagctcaggatggaaactgaaacctg Alignment from GeneWise GTTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAG cctaaacaagttgagcctaaaactatgccagcgctttgctctctatccaggtgctggcatcagCT------------TTCGGACATCCTGGCCCACCTGGACCTCCTGGACTACCTGGAACATCCTATGAAGAGTTACTGTCCATGCTCCAAGgtcagtcaaaagcaaaatgtccatcagctcaggatggaaactgaaacctg #### Col17a1_ID10277_45 --> 2 - 1 Original Alignment ggAACGATGTGTGGCAGTACTTACGT-CAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAa acatagacacattgggctcctcgattcattggttctgtgatttttcttaggaAATGATGTGTGGCAATACTTGCGTCCAAAATCTGGTGGGTCCTCCAAGTCCCTCAGGGCCACCAGGTGTCAGTGGAGAAGGGTCACTACTGTCT---------GGAGAGCTGAGCAAACACATTCTCAACTATATGTCAagtaaaaaatcaggattaacaacctcactgaggttgcccaagtagccactt Alignment from CESAR ggAACGATGTGTGGCAGTACTTACGT-CAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAa acatagacacattgggctcctcgattcattggttctgtgatttttcttaggaAATGATGTGTGGCAATACTTGCGTCCAAAATCTGGTGGGTCCTCCAAGTCCCTCAGGGCCACCAGGTGTCAGTGGAGAAGGGTCACTACTGTCT---------GGAGAGCTGAGCAAACACATTCTCAACTATATGTCAagtaaaaaatcaggattaacaacctcactgaggttgcccaagtagccactt Alignment from Spaln_aa2Genome GGAACGATGTGTGGCAGTACTTACGT-CAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagacacattgggctcctcgattcattggttctgtgatttttcttagGAAATGATGTGTGGCAATACTTGCGTcCAAAATCTGGTGGGTCCTCCAAGTCCCTCAGGGCCACCAGGTGTCAGTGGA---------GAAGGGTCACTACTGTCTGGAGAGCTGAGCAAACACATTCTCAACTATATGTCAAgtaaaaaatcaggattaacaacctcactgaggttgcccaagtagccactt Alignment from Spaln_nt2Genome GGAACGATGTGTGGCAGTACTTACGTC-AGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagacacattgggctcctcgattcattggttctgtgatttttcttagGAAATGATGTGTGGCAATACTTGCGTCCAAAATCTGGTGGGTCCTCCAAGTCCCTCAGGGCCACCAGGTGTCAGTGGAGAAGGGTCACTACTGTC---------TGGAGAGCTGAGCAAACACATTCTCAACTATATGTCAAgtaaaaaatcaggattaacaacctcactgaggttgcccaagtagccactt Alignment from Pairagon GGAACGATGTGTGGCAGTACTTACGT-CAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagacacattgggctcctcgattcattggttctgtgatttttcttagGAAATGATGTGTGGCAATACTTGCGTCCAAAATCTGGTGGGTCCTCCAAGTCCCTCAGGGCCACCAGGTGTCAGTGGAGAAGGGTCACTACTGTC---------TGGAGAGCTGAGCAAACACATTCTCAACTATATGTCAAgtaaaaaatcaggattaacaacctcactgaggttgcccaagtagccactt Alignment from Exonerate_protein2genome GGAACGATGTGTGGCAGTACTTACGT-CAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagacacattgggctcctcgattcattggttctgtgatttttcttagGAAATGATGTGTGGCAATACTTGCGTCCAAAATCTGGTGGGTCCTCCAAGTCCCTCAGGGCCACCAGGTGTCAGTGGAGAAGGGTCACTACTGTCT---------GGAGAGCTGAGCAAACACATTCTCAACTATATGTCAAgtaaaaaatcaggattaacaacctcactgaggttgcccaagtagccactt Alignment from Exonerate_coding2genome GGAACGATGTGTGGCAGTACTTACGT-CAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagacacattgggctcctcgattcattggttctgtgatttttcttagGAAATGATGTGTGGCAATACTTGCGTCCAAAATCTGGTGGGTCCTCCAAGTCCCTCAGGGCCACCAGGTGTCAGTGGAGAAGGGTCACTACTGTCT---------GGAGAGCTGAGCAAACACATTCTCAACTATATGTCAAgtaaaaaatcaggattaacaacctcactgaggttgcccaagtagccactt Alignment from GeneWise GGAACGATGTGTGGCAGTACTTACGT-CAGAATCTGGTGGGTCCTCCCGGTCCCCCAGGGCCACCAGGCGTCAGTGGAGATGGGTCCCTCCTGTCTTTGGACTATGGAGAGCTGAGCAGACACATTCTCAACTATATGTCAA acatagacacattgggctcctcgattcattggttctgtgatttttcttagGAAATGATGTGTGGCAATACTTGCGTCCAAAATCTGGTGGGTCCTCCAAGTCCCTCAGGGCCACCAGGTGTCAGTGGAGAAGGGTCACTACTGTCT---------GGAGAGCTGAGCAAACACATTCTCAACTATATGTCAAgtaaaaaatcaggattaacaacctcactgaggttgcccaagtagccactt #### Col17a1_ID10278_44 --> 2 - 1 Original Alignment caTCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGAT-ATCTTGGCCATGCTGCGAc ccatgggggttattagccaaagtcccctcctggctctcctctctcccaagcaTCAGGATACAGTGCTGGCTTGTCCTCTGCTTCCTCCTCAGAAGATCATCTTGGCCATGCTGCGAcgtaatgatcctccaacaggcaggaatagggtcttttacctccctcctgtc Alignment from CESAR caTCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGAT-ATCTTGGCCATGCTGCGAc ccatgggggttattagccaaagtcccctcctggctctcctctctcccaagcaTCAGGATACAGTGCTGGCTTGTCCTCTGCTTCCTCCTCAGAAGATCATCTTGGCCATGCTGCGAcgtaatgatcctccaacaggcaggaatagggtcttttacctccctcctgtc Alignment from Spaln_aa2Genome CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGAT-ATCTTGGCCATGCTGCGAC ccatgggggttattagccaaagtcccctcctggctctcctctctcccaagCATCAGGATACAGTGCTGGCTTGTCCTCTGCTTCCTCCTCAGAAGATcATCTTGGCCATGCTGCGACgtaatgatcctccaacaggcaggaatagggtcttttacctccctcctgtc Alignment from Spaln_nt2Genome CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGAT-ATCTTGGCCATGCTGCGAC ccatgggggttattagccaaagtcccctcctggctctcctctctcccaagCATCAGGATACAGTGCTGGCTTGTCCTCTGCTTCCTCCTCAGAAGATCATCTTGGCCATGCTGCGACgtaatgatcctccaacaggcaggaatagggtcttttacctccctcctgtc Alignment from Pairagon CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGAT-ATCTTGGCCATGCTGCGAC ccatgggggttattagccaaagtcccctcctggctctcctctctcccaagCATCAGGATACAGTGCTGGCTTGTCCTCTGCTTCCTCCTCAGAAGATCATCTTGGCCATGCTGCGACgtaatgatcctccaacaggcaggaatagggtcttttacctccctcctgtc Alignment from Exonerate_protein2genome CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGAT-ATCTTGGCCATGCTGCGAC ccatgggggttattagccaaagtcccctcctggctctcctctctcccaagCATCAGGATACAGTGCTGGCTTGTCCTCTGCTTCCTCCTCAGAAGATCATCTTGGCCATGCTGCGACgtaatgatcctccaacaggcaggaatagggtcttttacctccctcctgtc Alignment from Exonerate_coding2genome CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGAT-ATCTTGGCCATGCTGCGAC ccatgggggttattagccaaagtcccctcctggctctcctctctcccaagCATCAGGATACAGTGCTGGCTTGTCCTCTGCTTCCTCCTCAGAAGATCATCTTGGCCATGCTGCGACgtaatgatcctccaacaggcaggaatagggtcttttacctccctcctgtc Alignment from GeneWise CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCCTCAGAAGAT-ATCTTGGCCATGCTGCGAC ccatgggggttattagccaaagtcccctcctggctctcctctctcccaagCATCAGGATACAGTGCTGGCTTGTCCTCTGCTTCCTCCTCAGAAGATCATCTTGGCCATGCTGCGACgtaatgatcctccaacaggcaggaatagggtcttttacctccctcctgtc #### Col17a1_ID10280_42 --> 2 - 1 Original Alignment ggGCGTCATCAAGCACT-CTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAa tacttttggtgagataaggagctgagttgagcctctttcttttcttgcagggGCATCATCAAGCACTCCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCAGAATACATGCAAagtgggtgcttcgacatcccacaccatggacatgaggggaaaaaggagggt Alignment from CESAR ggGCGTCATCAAGCACT-CTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAa tacttttggtgagataaggagctgagttgagcctctttcttttcttgcagggGCATCATCAAGCACTCCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCAGAATACATGCAAagtgggtgcttcgacatcccacaccatggacatgaggggaaaaaggagggt Alignment from Spaln_aa2Genome GGGCGTCATCAAGCACT-CTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tacttttggtgagataaggagctgagttgagcctctttcttttcttgcagGGGCATCATCAAGCACTcCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCAGAATACATGCAAAgtgggtgcttcgacatcccacaccatggacatgaggggaaaaaggagggt Alignment from Spaln_nt2Genome GGGCGTCATCAAGCACT-CTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tacttttggtgagataaggagctgagttgagcctctttcttttcttgcagGGGCATCATCAAGCACTCCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCAGAATACATGCAAAgtgggtgcttcgacatcccacaccatggacatgaggggaaaaaggagggt Alignment from Pairagon GGGCGTCATCAAGCACT-CTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tacttttggtgagataaggagctgagttgagcctctttcttttcttgcagGGGCATCATCAAGCACTCCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCAGAATACATGCAAAgtgggtgcttcgacatcccacaccatggacatgaggggaaaaaggagggt Alignment from Exonerate_protein2genome GGGCGTCATCAAGCACT-CTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tacttttggtgagataaggagctgagttgagcctctttcttttcttgcagGGGCATCATCAAGCACTCCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCAGAATACATGCAAAgtgggtgcttcgacatcccacaccatggacatgaggggaaaaaggagggt Alignment from Exonerate_coding2genome GGGCGTCATCAAGCACT-CTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tacttttggtgagataaggagctgagttgagcctctttcttttcttgcagGGGCATCATCAAGCACTCCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCAGAATACATGCAAAgtgggtgcttcgacatcccacaccatggacatgaggggaaaaaggagggt Alignment from GeneWise ----------------------GCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tacttttggtgagataaggagctgagttgagCCTCTTTCTTTTCTTGCAGGGGCATCATCAAGCACTCCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCAGAATACATGCAAAgtgggtgcttcgacatcccacaccatggacatgaggggaaaaaggagggt #### Col17a1_ID10285_37 --> 2 - 1 Original Alignment aaGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCA-CGAGGGCCACCAg caaagagtctgacctcagtcttctttgtcatgtcatttcatgccctctagaaGGGGTTGGCTTACGTGGTCCCCCTGGCCCACCTGGACCACCGAGGGCCACCAggtaagcactcactaacatttagaagtggggagaatcacagaagtggggag Alignment from CESAR aaGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCA-CGAGGGCCACCAg caaagagtctgacctcagtcttctttgtcatgtcatttcatgccctctagaaGGGGTTGGCTTACGTGGTCCCCCTGGCCCACCTGGACCACCGAGGGCCACCAggtaagcactcactaacatttagaagtggggagaatcacagaagtggggag Alignment from Spaln_aa2Genome AAGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCA-CGAGGGCCACCAG caaagagtctgacctcagtcttctttgtcatgtcatttcatgccctctagAAGGGGTTGGCTTACGTGGTCCCCCTGGCCCACCTGGACCAcCGAGGGCCACCAGgtaagcactcactaacatttagaagtggggagaatcacagaagtggggag Alignment from Spaln_nt2Genome AAGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCAC-GAGGGCCACCAG caaagagtctgacctcagtcttctttgtcatgtcatttcatgccctctagAAGGGGTTGGCTTACGTGGTCCCCCTGGCCCACCTGGACCACCGAGGGCCACCAGgtaagcactcactaacatttagaagtggggagaatcacagaagtggggag Alignment from Pairagon AAGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCA-CGAGGGCCACCAG caaagagtctgacctcagtcttctttgtcatgtcatttcatgccctctagAAGGGGTTGGCTTACGTGGTCCCCCTGGCCCACCTGGACCACCGAGGGCCACCAGgtaagcactcactaacatttagaagtggggagaatcacagaagtggggag Alignment from Exonerate_protein2genome AAGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCA-CGAGGGCCACCAG caaagagtctgacctcagtcttctttgtcatgtcatttcatgccctctagAAGGGGTTGGCTTACGTGGTCCCCCTGGCCCACCTGGACCACCGAGGGCCACCAGgtaagcactcactaacatttagaagtggggagaatcacagaagtggggag Alignment from Exonerate_coding2genome AAGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCA-CGAGGGCCACCAG caaagagtctgacctcagtcttctttgtcatgtcatttcatgccctctagAAGGGGTTGGCTTACGTGGTCCCCCTGGCCCACCTGGACCACCGAGGGCCACCAGgtaagcactcactaacatttagaagtggggagaatcacagaagtggggag Alignment from GeneWise caaagagtctgacctcagtcttctttgtcatgtcatttcatgccctctagaaggggttggcttacgtggtccccctggcccacctggaccaccgagggccaccaggtaagcactcactaacatttagaagtggggagaatcacagaagtggggag #### Col17a1_ID10301_21 --> 2 - 1 Original Alignment gtATCCCTGGGCCCCTGGGCCAC-CCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTg cgcagcatcaagaggaaatccagactaatctggtctttggcctcctgtaggtATTCCTGGGCCATTGGGCCACCCCTGGCCCAGAAGGGCCAAAGGGACAAAAAGGCAGCATTggtaaaggctcttgtccttctatgtgcatttccttgtgtatcccttccaac Alignment from CESAR gtATCCCTGGGCCCCTGGGCCAC-CCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTg cgcagcatcaagaggaaatccagactaatctggtctttggcctcctgtaggtATTCCTGGGCCATTGGGCCACCCCTGGCCCAGAAGGGCCAAAGGGACAAAAAGGCAGCATTggtaaaggctcttgtccttctatgtgcatttccttgtgtatcccttccaac Alignment from Spaln_aa2Genome GTATCCCTGGGCCCCTGGGCCAC-CCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG cgcagcatcaagaggaaatccagactaatctggtctttggcctcctgtagGTATTCCTGGGCCATTGGGCCACcCCTGGCCCAGAAGGGCCAAAGGGACAAAAAGGCAGCATTGgtaaaggctcttgtccttctatgtgcatttccttgtgtatcccttccaac Alignment from Spaln_nt2Genome GTATCCCTGGGCCCCTGGGCCACCC-TGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG cgcagcatcaagaggaaatccagactaatctggtctttggcctcctgtagGTATTCCTGGGCCATTGGGCCACCCCTGGCCCAGAAGGGCCAAAGGGACAAAAAGGCAGCATTGgtaaaggctcttgtccttctatgtgcatttccttgtgtatcccttccaac Alignment from Pairagon GTATCCCTGGGCCCCTGGGCCA-CCCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG cgcagcatcaagaggaaatccagactaatctggtctttggcctcctgtagGTATTCCTGGGCCATTGGGCCACCCCTGGCCCAGAAGGGCCAAAGGGACAAAAAGGCAGCATTGgtaaaggctcttgtccttctatgtgcatttccttgtgtatcccttccaac Alignment from Exonerate_protein2genome GTATCCCTGGGCCCCTGGGCCAC-CCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG cgcagcatcaagaggaaatccagactaatctggtctttggcctcctgtagGTATTCCTGGGCCATTGGGCCACCCCTGGCCCAGAAGGGCCAAAGGGACAAAAAGGCAGCATTGgtaaaggctcttgtccttctatgtgcatttccttgtgtatcccttccaac Alignment from Exonerate_coding2genome GTATCCCTGGGCCCCTGGGCCAC-CCTGGCCCGGAAGGACCAAAGGGACAAAAAGGCAGCATTG cgcagcatcaagaggaaatccagactaatctggtctttggcctcctgtagGTATTCCTGGGCCATTGGGCCACCCCTGGCCCAGAAGGGCCAAAGGGACAAAAAGGCAGCATTGgtaaaggctcttgtccttctatgtgcatttccttgtgtatcccttccaac Alignment from GeneWise cgcagcatcaagaggaaatccagactaatctggtctttggcctcctgtaggtattcctgggccattgggccacccctggcccagaagggccaaagggacaaaaaggcagcattggtaaaggctcttgtccttctatgtgcatttccttgtgtatcccttccaac #### Col17a1_ID10308_14 --> 2 - 1 Original Alignment ctTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCA-TATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATg caggcaggtgtaaaaacagtagactgaatcttgtgctctctgtccgttagctTCCTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGGCTGCACTATGCTGCTGACACCTGCCTCAAGGCAGATGTGAATggtgagcgaaatctgaccagccactgagtgcacaaagctgcaccttattta Alignment from CESAR ctTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCA-TATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATg caggcaggtgtaaaaacagtagactgaatcttgtgctctctgtccgttagctTCCTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGGCTGCACTATGCTGCTGACACCTGCCTCAAGGCAGATGTGAATggtgagcgaaatctgaccagccactgagtgcacaaagctgcaccttattta Alignment from Spaln_aa2Genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCA-TATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG caggcaggtgtaaaaacagtagactgaatcttgtgctctctgtccgttagCTTCCTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGGCTGCAcTATGCTGCTGACACCTGCCTCAAGGCAGATGTGAATGgtgagcgaaatctgaccagccactgagtgcacaaagctgcaccttattta Alignment from Spaln_nt2Genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCA-TATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG caggcaggtgtaaaaacagtagactgaatcttgtgctctctgtccgttagCTTCCTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGGCTGCACTATGCTGCTGACACCTGCCTCAAGGCAGATGTGAATGgtgagcgaaatctgaccagccactgagtgcacaaagctgcaccttattta Alignment from Pairagon CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCA-TATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG caggcaggtgtaaaaacagtagactgaatcttgtgctctctgtccgttagCTTCCTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGGCTGCACTATGCTGCTGACACCTGCCTCAAGGCAGATGTGAATGgtgagcgaaatctgaccagccactgagtgcacaaagctgcaccttattta Alignment from Exonerate_protein2genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCA-TATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG caggcaggtgtaaaaacagtagactgaatcttgtgctctctgtccgttagCTTCCTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGGCTGCACTATGCTGCTGACACCTGCCTCAAGGCAGATGTGAATGgtgagcgaaatctgaccagccactgagtgcacaaagctgcaccttattta Alignment from Exonerate_coding2genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCTGCA-TATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG caggcaggtgtaaaaacagtagactgaatcttgtgctctctgtccgttagCTTCCTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGGCTGCACTATGCTGCTGACACCTGCCTCAAGGCAGATGTGAATGgtgagcgaaatctgaccagccactgagtgcacaaagctgcaccttattta Alignment from GeneWise CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAGCAGGCT-GCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG caggcaggtgtaaaaacagtagactgaatcttgtgctctctgtccgttagCTTCCTTCTCAGAAGAGACACTGAAAAAGGAGAAGCAGGCTGCACTATGCTGCTGACACCTGCCTCAAGGCAGATGTGAATGgtgagcgaaatctgaccagccactgagtgcacaaagctgcaccttattta #### Coro1b_ID352_2 --> 0 - 0 Original Alignment ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCT-GTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaagttaggagctttgggccttctttttgcacactctgctcctcgcagACAGGCCGTGTTGACAAGGCATTCCCAACAGTGTGTGGGCACACAGGGCCTCGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGATTGCACTGTCATGgtaagaaaaaatctgttcaagctgggctcaggatgtgtctgaggggtact Alignment from CESAR ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCT-GTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaagttaggagctttgggccttctttttgcacactctgctcctcgcagACAGGCCGTGTTGACAAGGCATTCCCAACAGTGTGTGGGCACACAGGGCCTCGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGATTGCACTGTCATGgtaagaaaaaatctgttcaagctgggctcaggatgtgtctgaggggtact Alignment from Spaln_aa2Genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCT-GTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaagttaggagctttgggccttctttttgcacactctgctcctcgcagACAGGCCGTGTTGACAAGGCATTCCCAACAGTGTGTGGGCACACAGGGCCTcGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGATTGCACTGTCATGgtaagaaaaaatctgttcaagctgggctcaggatgtgtctgaggggtact Alignment from Spaln_nt2Genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCT-GTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaagttaggagctttgggccttctttttgcacactctgctcctcgcagACAGGCCGTGTTGACAAGGCATTCCCAACAGTGTGTGGGCACACAGGGCCTCGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGATTGCACTGTCATGgtaagaaaaaatctgttcaagctgggctcaggatgtgtctgaggggtact Alignment from Pairagon ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCT-GTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaagttaggagctttgggccttctttttgcacactctgctcctcgcagACAGGCCGTGTTGACAAGGCATTCCCAACAGTGTGTGGGCACACAGGGCCTCGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGATTGCACTGTCATGgtaagaaaaaatctgttcaagctgggctcaggatgtgtctgaggggtact Alignment from Exonerate_protein2genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCT-GTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaagttaggagctttgggccttctttttgcacactctgctcctcgcagACAGGCCGTGTTGACAAGGCATTCCCAACAGTGTGTGGGCACACAGGGCCTCGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGATTGCACTGTCATGgtaagaaaaaatctgttcaagctgggctcaggatgtgtctgaggggtact Alignment from Exonerate_coding2genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCT-GTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaagttaggagctttgggccttctttttgcacactctgctcctcgcagACAGGCCGTGTTGACAAGGCATTCCCAACAGTGTGTGGGCACACAGGGCCTCGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGATTGCACTGTCATGgtaagaaaaaatctgttcaagctgggctcaggatgtgtctgaggggtact Alignment from GeneWise ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCT-GTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaagttaggagctttgggccttctttttgcacactctgctcctcgcagACAGGCCGTGTTGACAAGGCATTCCCAACAGTGTGTGGGCACACAGGGCCTCGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGATTGCACTGTCATGgtaagaaaaaatctgttcaagctgggctcaggatgtgtctgaggggtact #### Coro1b_ID353_3 --> 0 - 1 Original Alignment GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC------AAGCGCGTGGGCATT-ATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAg caacctccctcctgacagctggcctgtcgtaactactttcttatttttagGTATGGCAGATTCCAGAAAACGGGTTGACCTCCCCCCTGACAGAGCCAGTAGTTGTGCCTGAGGGGCATACAATTAAGCGACGTGTGGGCATTCACTACCTGGCACCCTACAGCCCGGATTGTGCTTCTTGGTGCAggtaggtaccactccatacctacaccttgctctctacccttctccagaatg Alignment from CESAR GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC---AAG---CGCGTGGGCATT-ATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAg caacctccctcctgacagctggcctgtcgtaactactttcttatttttagGTATGGCAGATTCCAGAAAACGGGTTGACCTCCCCCCTGACAGAGCCAGTAGTTGTGCCTGAGGGGCATACAATTAAGCGACGTGTGGGCATTCACTACCTGGCACCCTACAGCCCGGATTGTGCTTCTTGGTGCAggtaggtaccactccatacctacaccttgctctctacccttctccagaatg Alignment from Spaln_aa2Genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC------AAGCGCGTGGGCATT-ATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG caacctccctcctgacagctggcctgtcgtaactactttcttatttttagGTATGGCAGATTCCAGAAAACGGGTTGACCTCCCCCCTGACAGAGCCAGTAGTTGTGCCTGAGGGGCATACAATTAAGCGACGTGTGGGCATTcACTACCTGGCACCCTACAGCCCGGATTGTGCTTCTTGGTGCAGgtaggtaccactccatacctacaccttgctctctacccttctccagaatg Alignment from Spaln_nt2Genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACCA---AGCGC---GTGGGCATTATC-ACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG caacctccctcctgacagctggcctgtcgtaactactttcttatttttagGTATGGCAGATTCCAGAAAACGGGTTGACCTCCCCCCTGACAGAGCCAGTAGTTGTGCCTGAGGGGCATACAATTAAGCGACGTGTGGGCATTCACTACCTGGCACCCTACAGCCCGGATTGTGCTTCTTGGTGCAGgtaggtaccactccatacctacaccttgctctctacccttctccagaatg Alignment from Pairagon GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACCA------AGCGCGTGGGCATT-ATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG caacctccctcctgacagctggcctgtcgtaactactttcttatttttagGTATGGCAGATTCCAGAAAACGGGTTGACCTCCCCCCTGACAGAGCCAGTAGTTGTGCCTGAGGGGCATACAATTAAGCGACGTGTGGGCATTCACTACCTGGCACCCTACAGCCCGGATTGTGCTTCTTGGTGCAGgtaggtaccactccatacctacaccttgctctctacccttctccagaatg Alignment from Exonerate_protein2genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC------AAGCGCGTGGGCATT-ATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG caacctccctcctgacagctggcctgtcgtaactactttcttatttttagGTATGGCAGATTCCAGAAAACGGGTTGACCTCCCCCCTGACAGAGCCAGTAGTTGTGCCTGAGGGGCATACAATTAAGCGACGTGTGGGCATTCACTACCTGGCACCCTACAGCCCGGATTGTGCTTCTTGGTGCAGgtaggtaccactccatacctacaccttgctctctacccttctccagaatg Alignment from Exonerate_coding2genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC------AAGCGCGTGGGCATT-ATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG caacctccctcctgacagctggcctgtcgtaactactttcttatttttagGTATGGCAGATTCCAGAAAACGGGTTGACCTCCCCCCTGACAGAGCCAGTAGTTGTGCCTGAGGGGCATACAATTAAGCGACGTGTGGGCATTCACTACCTGGCACCCTACAGCCCGGATTGTGCTTCTTGGTGCAGgtaggtaccactccatacctacaccttgctctctacccttctccagaatg Alignment from GeneWise GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC------AAGCGCGTGGGCATT-ATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG caacctccctcctgacagctggcctgtcgtaactactttcttatttttagGTATGGCAGATTCCAGAAAACGGGTTGACCTCCCCCCTGACAGAGCCAGTAGTTGTGCCTGAGGGGCATACAATTAAGCGACGTGTGGGCATTCACTACCTGGCACCCTACAGCCCGGATTGTGCTTCTTGGTGCAGgtaggtaccactccatacctacaccttgctctctacccttctccagaatg #### Coro1b_ID355_5 --> 0 - 0 Original Alignment GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAG-GTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccaccctgtacatattttattttttcctcccagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCGATGGAAAGCGTGTTCTCCACAGGTTTCAGCCACATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaagggatacaggaagactattgcagggcaggtctgtgacctatgcctg Alignment from CESAR GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAG-GTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccaccctgtacatattttattttttcctcccagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCGATGGAAAGCGTGTTCTCCACAGGTTTCAGCCACATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaagggatacaggaagactattgcagggcaggtctgtgacctatgcctg Alignment from Spaln_aa2Genome GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAG-GTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccaccctgtacatattttattttttcctcccagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCGATGGAAAGcGTGTTCTCCACAGGTTTCAGCCACATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaagggatacaggaagactattgcagggcaggtctgtgacctatgcctg Alignment from Spaln_nt2Genome GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAG-GTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccaccctgtacatattttattttttcctcccagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCGATGGAAAGCGTGTTCTCCACAGGTTTCAGCCACATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaagggatacaggaagactattgcagggcaggtctgtgacctatgcctg Alignment from Pairagon GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAG-GTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccaccctgtacatattttattttttcctcccagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCGATGGAAAGCGTGTTCTCCACAGGTTTCAGCCACATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaagggatacaggaagactattgcagggcaggtctgtgacctatgcctg Alignment from Exonerate_protein2genome GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAG-GTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccaccctgtacatattttattttttcctcccagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCGATGGAAAGCGTGTTCTCCACAGGTTTCAGCCACATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaagggatacaggaagactattgcagggcaggtctgtgacctatgcctg Alignment from Exonerate_coding2genome GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAG-GTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccaccctgtacatattttattttttcctcccagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCGATGGAAAGCGTGTTCTCCACAGGTTTCAGCCACATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaagggatacaggaagactattgcagggcaggtctgtgacctatgcctg Alignment from GeneWise GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAG-GTGTTCACCACAGGTTTCAGCCGCATGAGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccaccctgtacatattttattttttcctcccagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCGATGGAAAGCGTGTTCTCCACAGGTTTCAGCCACATGAGTGAACGGCAGCTGGCACTCTGGGACCCAgtaagggatacaggaagactattgcagggcaggtctgtgacctatgcctg #### Csf2ra_ID13430_10 --> 1 - 0 Original Alignment gTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCA-GGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG gtggacacccaggtgcatgctactctgctctttaaacttatgtattataggTTGGAGGTGACACGCCGACTCTTCCCACCCATCCCACGGGATCAGGGACAAGGTGTCTGACGATGTGCGAGTGAACCCTGAGgtaagtagtcacaggcactagtggtgggagtcgagcatgacacttgaccc Alignment from CESAR gTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCA-GGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG gtggacacccaggtgcatgctactctgctctttaaacttatgtattataggTTGGAGGTGACACGCCGACTCTTCCCACCCATCCCACGGGATCAGGGACAAGGTGTCTGACGATGTGCGAGTGAACCCTGAGgtaagtagtcacaggcactagtggtgggagtcgagcatgacacttgaccc Alignment from Spaln_aa2Genome GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCA-GGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG gtggacacccaggtgcatgctactctgctctttaaacttatgtattatagGTTGGAGGTGACACGCCGACTCTTCCCACCCATCCCAcGGGATCAGGGACAAGGTGTCTGACGATGTGCGAGTGAACCCTGAGgtaagtagtcacaggcactagtggtgggagtcgagcatgacacttgaccc Alignment from Spaln_nt2Genome GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCA-GGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG gtggacacccaggtgcatgctactctgctctttaaacttatgtattatagGTTGGAGGTGACACGCCGACTCTTCCCACCCATCCCACGGGATCAGGGACAAGGTGTCTGACGATGTGCGAGTGAACCCTGAGgtaagtagtcacaggcactagtggtgggagtcgagcatgacacttgaccc Alignment from Pairagon GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCA-GGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG gtggacacccaggtgcatgctactctgctctttaaacttatgtattatagGTTGGAGGTGACACGCCGACTCTTCCCACCCATCCCACGGGATCAGGGACAAGGTGTCTGACGATGTGCGAGTGAACCCTGAGgtaagtagtcacaggcactagtggtgggagtcgagcatgacacttgaccc Alignment from Exonerate_protein2genome GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCA-GGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG gtggacacccaggtgcatgctactctgctctttaaacttatgtattatagGTTGGAGGTGACACGCCGACTCTTCCCACCCATCCCACGGGATCAGGGACAAGGTGTCTGACGATGTGCGAGTGAACCCTGAGgtaagtagtcacaggcactagtggtgggagtcgagcatgacacttgaccc Alignment from Exonerate_coding2genome GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCA-GGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG gtggacacccaggtgcatgctactctgctctttaaacttatgtattatagGTTGGAGGTGACACGCCGACTCTTCCCACCCATCCCACGGGATCAGGGACAAGGTGTCTGACGATGTGCGAGTGAACCCTGAGgtaagtagtcacaggcactagtggtgggagtcgagcatgacacttgaccc Alignment from GeneWise GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCA-GGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG gtggacacccaggtgcatgctactctgctctttaaacttatgtattatagGTTGGAGGTGACACGCCGACTCTTCCCACCCATCCCACGGGATCAGGGACAAGGTGTCTGACGATGTGCGAGTGAACCCTGAGgtaagtagtcacaggcactagtggtgggagtcgagcatgacacttgaccc #### Csf2ra_ID13431_9 --> 2 - 2 Original Alignment agGCTGAGGACACGCGA-GTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGag acatgaacagattacttccagtttgctatcctatgtcttcttttctgcagatGCAGAGGACACGCGGCGTGCCTGGTGCACTCCTGTACGCAGTAACAGCCTGTGCAGTCCTGCTGTGCGCACTGGTGCTCGGAGTGACTTGCAGGaggtgaggcaaaggagaattatcctgaacgagggtgtgagcgggtggacacc Alignment from CESAR agGCTGAGGACACGCGA-GTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGag acatgaacagattacttccagtttgctatcctatgtcttcttttctgcagatGCAGAGGACACGCGGCGTGCCTGGTGCACTCCTGTACGCAGTAACAGCCTGTGCAGTCCTGCTGTGCGCACTGGTGCTCGGAGTGACTTGCAGGaggtgaggcaaaggagaattatcctgaacgagggtgtgagcgggtggacacc Alignment from Spaln_aa2Genome AGGCTGAGGACACGCGA-GTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagattacttccagtttgctatcctatgtcttcttttctgcagATGCAGAGGACACGCGGcGTGCCTGGTGCACTCCTGTACGCAGTAACAGCCTGTGCAGTCCTGCTGTGCGCACTGGTGCTCGGAGTGACTTGCAGGAGgtgaggcaaaggagaattatcctgaacgagggtgtgagcgggtggacacc Alignment from Spaln_nt2Genome AGGCTGAGGACACGCGA-GTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagattacttccagtttgctatcctatgtcttcttttctgcagATGCAGAGGACACGCGGCGTGCCTGGTGCACTCCTGTACGCAGTAACAGCCTGTGCAGTCCTGCTGTGCGCACTGGTGCTCGGAGTGACTTGCAGGAGgtgaggcaaaggagaattatcctgaacgagggtgtgagcgggtggacacc Alignment from Pairagon AGGCTGAGGACACGCGA-GTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagattacttccagtttgctatcctatgtcttcttttctgcagATGCAGAGGACACGCGGCGTGCCTGGTGCACTCCTGTACGCAGTAACAGCCTGTGCAGTCCTGCTGTGCGCACTGGTGCTCGGAGTGACTTGCAGGAGgtgaggcaaaggagaattatcctgaacgagggtgtgagcgggtggacacc Alignment from Exonerate_protein2genome AGGCTGAGGACACGCGA-GTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagattacttccagtttgctatcctatgtcttcttttctgcagATGCAGAGGACACGCGGCGTGCCTGGTGCACTCCTGTACGCAGTAACAGCCTGTGCAGTCCTGCTGTGCGCACTGGTGCTCGGAGTGACTTGCAGGAGgtgaggcaaaggagaattatcctgaacgagggtgtgagcgggtggacacc Alignment from Exonerate_coding2genome AGGCTGAGGACACGCGA-GTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagattacttccagtttgctatcctatgtcttcttttctgcagATGCAGAGGACACGCGGCGTGCCTGGTGCACTCCTGTACGCAGTAACAGCCTGTGCAGTCCTGCTGTGCGCACTGGTGCTCGGAGTGACTTGCAGGAGgtgaggcaaaggagaattatcctgaacgagggtgtgagcgggtggacacc Alignment from GeneWise AGGCTGAGGACACGCGA-GTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagattacttccagtttgctatcctatgtcttcttttctgcagATGCAGAGGACACGCGGCGTGCCTGGTGCACTCCTGTACGCAGTAACAGCCTGTGCAGTCCTGCTGTGCGCACTGGTGCTCGGAGTGACTTGCAGGAGgtgaggcaaaggagaattatcctgaacgagggtgtgagcgggtggacacc #### Csf2ra_ID13433_7 --> 0 - 0 Original Alignment AGCGCAGAGCCA-GGAAGCACACCCCGGAAG cttgcctgccacactcaaaatccgcagcccacagatatttgttttcctagAGCGCAGAACCACGGAAGCACACCCCGGCAGgtagggtgagtagatgcaggaactggcctggattgtactgtaggagtaca Alignment from CESAR AGCGCAGAGCCA-GGAAGCACACCCCGGAAG cttgcctgccacactcaaaatccgcagcccacagatatttgttttcctagAGCGCAGAACCACGGAAGCACACCCCGGCAGgtagggtgagtagatgcaggaactggcctggattgtactgtaggagtaca Alignment from Spaln_aa2Genome AGCGCAGAGCCAGGA------AGCACACCCCGGAAG cttgcctgccacactcaaaatccgcagcccacagatatttgttttcctagAGCGCAGAACCACGGAAGCACACCCCGGCAGGTAGGgtgagtagatgcaggaactggcctggattgtactgtaggagtaca Alignment from Spaln_nt2Genome AGCGCAGAGCCA-GGAAGCACACCCCGGAAG cttgcctgccacactcaaaatccgcagcccacagatatttgttttcctagAGCGCAGAACCACGGAAGCACACCCCGGCAGgtagggtgagtagatgcaggaactggcctggattgtactgtaggagtaca Alignment from Pairagon AGCGCAGAGCCA-GGAAGCACACCCCGGAAG cttgcctgccacactcaaaatccgcagcccacagatatttgttttcctagAGCGCAGAACCACGGAAGCACACCCCGGCAGgtagggtgagtagatgcaggaactggcctggattgtactgtaggagtaca Alignment from Exonerate_protein2genome AGCGCAGAGCCA-GGAAGCACACCCCGGAAG cttgcctgccacactcaaaatccgcagcccacagatatttgttttcctagAGCGCAGAACCACGGAAGCACACCCCGGCAGgtagggtgagtagatgcaggaactggcctggattgtactgtaggagtaca Alignment from Exonerate_coding2genome cttgcctgccacactcaaaatccgcagcccacagatatttgttttcctagagcgcagaaccacggaagcacaccccggcaggtagggtgagtagatgcaggaactggcctggattgtactgtaggagtaca Alignment from GeneWise cttgcctgccacactcaaaatccgcagcccacagatatttgttttcctagagcgcagaaccacggaagcacaccccggcaggtagggtgagtagatgcaggaactggcctggattgtactgtaggagtaca #### Csf2ra_ID13434_6 --> 2 - 0 Original Alignment agCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCC-TTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aaggtgggacttgtacgtgatagctcttcatttccttttcatccctgcagagCGTCTTGGTCCCCCACGTGATGTCACGGCATCCTGCAACTCTTCCCATTGTACCGTTTCATGGGCCCCACCCTCAACCTGGGCATCCCCTGACGGCACGGGACTATCAGTTTGAGGTCCAGTGGCAAgtgagtagggcttctcctttttggaaaggcacaagggaggatatgccaag Alignment from CESAR agCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCC-TTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aaggtgggacttgtacgtgatagctcttcatttccttttcatccctgcagagCGTCTTGGTCCCCCACGTGATGTCACGGCATCCTGCAACTCTTCCCATTGTACCGTTTCATGGGCCCCACCCTCAACCTGGGCATCCCCTGACGGCACGGGACTATCAGTTTGAGGTCCAGTGGCAAgtgagtagggcttctcctttttggaaaggcacaagggaggatatgccaag Alignment from Spaln_aa2Genome AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCC-TTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aaggtgggacttgtacgtgatagctcttcatttccttttcatccctgcagAGCGTCTTGGTCCCCCACGTGATGTCACGGCATCCTGCAACTCTTCCCATTGTACCGTTTCATGGGCCCCACCCTCAACCTGGGCATCCcCTGACGGCACGGGACTATCAGTTTGAGGTCCAGTGGCAAgtgagtagggcttctcctttttggaaaggcacaagggaggatatgccaag Alignment from Spaln_nt2Genome AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCT-TGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aaggtgggacttgtacgtgatagctcttcatttccttttcatccctgcagAGCGTCTTGGTCCCCCACGTGATGTCACGGCATCCTGCAACTCTTCCCATTGTACCGTTTCATGGGCCCCACCCTCAACCTGGGCATCCCCTGACGGCACGGGACTATCAGTTTGAGGTCCAGTGGCAAgtgagtagggcttctcctttttggaaaggcacaagggaggatatgccaag Alignment from Pairagon AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCAT-CCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aaggtgggacttgtacgtgatagctcttcatttccttttcatccctgcagAGCGTCTTGGTCCCCCACGTGATGTCACGGCATCCTGCAACTCTTCCCATTGTACCGTTTCATGGGCCCCACCCTCAACCTGGGCATCCCCTGACGGCACGGGACTATCAGTTTGAGGTCCAGTGGCAAgtgagtagggcttctcctttttggaaaggcacaagggaggatatgccaag Alignment from Exonerate_protein2genome AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCC-TTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aaggtgggacttgtacgtgatagctcttcatttccttttcatccctgcagAGCGTCTTGGTCCCCCACGTGATGTCACGGCATCCTGCAACTCTTCCCATTGTACCGTTTCATGGGCCCCACCCTCAACCTGGGCATCCCCTGACGGCACGGGACTATCAGTTTGAGGTCCAGTGGCAAgtgagtagggcttctcctttttggaaaggcacaagggaggatatgccaag Alignment from Exonerate_coding2genome AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCC-TTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aaggtgggacttgtacgtgatagctcttcatttccttttcatccctgcagAGCGTCTTGGTCCCCCACGTGATGTCACGGCATCCTGCAACTCTTCCCATTGTACCGTTTCATGGGCCCCACCCTCAACCTGGGCATCCCCTGACGGCACGGGACTATCAGTTTGAGGTCCAGTGGCAAgtgagtagggcttctcctttttggaaaggcacaagggaggatatgccaag Alignment from GeneWise AGCGACTCGGTCCCCCACGTGACGTCACCGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCA-TCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aaggtgggacttgtacgtgatagctcttcatttccttttcatccctgcagAGCGTCTTGGTCCCCCACGTGATGTCACGGCATCCTGCAACTCTTCCCATTGTACCGTTTCATGGGCCCCACCCTCAACCTGGGCATCCCCTGACGGCACGGGACTATCAGTTTGAGGTCCAGTGGCAAgtgagtagggcttctcctttttggaaaggcacaagggaggatatgccaag #### Csf2ra_ID13435_5 --> 1 - 1 Original Alignment gGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTG-ACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCg actttctataacctcattgccgactctggctgctttggttttccttccagaGGTCACGATGTGGCACGTTGCATGGCTGATCCTGGGGACGATGTCATCACCCAGTGCATTGCAAATGATTTATCACTGCTGGGGAGTGAGGCCTACTTAGTCGTACACTGGTCGGAGTGGGGCAGGGCCAGTGTGGTTTCTAGACGATGTGGTGGCTACAAAGGCACTCggtgagattgcggttatgagtaggtgcggggcttctaagtggcaacctgga Alignment from CESAR gGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTG-ACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCg actttctataacctcattgccgactctggctgctttggttttccttccagaGGTCACGATGTGGCACGTTGCATGGCTGATCCTGGGGACGATGTCATCACCCAGTGCATTGCAAATGATTTATCACTGCTGGGGAGTGAGGCCTACTTAGTCGTACACTGGTCGGAGTGGGGCAGGGCCAGTGTGGTTTCTAGACGATGTGGTGGCTACAAAGGCACTCggtgagattgcggttatgagtaggtgcggggcttctaagtggcaacctgga Alignment from Spaln_aa2Genome GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTG-ACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG actttctataacctcattgccgactctggctgctttggttttccttccagAGGTCACGATGTGGCACGTTGCATGGCTGATCCTGGGGACGATGTCATCACCCAGTGCATTGCAAATGATTTATCACTGCTGGGGAGTGAGGCCTACTTAGTCGTAcACTGGTCGGAGTGGGGCAGGGCCAGTGTGGTTTCTAGACGATGTGGTGGCTACAAAGGCACTCGgtgagattgcggttatgagtaggtgcggggcttctaagtggcaacctgga Alignment from Spaln_nt2Genome GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTG-ACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG actttctataacctcattgccgactctggctgctttggttttccttccagAGGTCACGATGTGGCACGTTGCATGGCTGATCCTGGGGACGATGTCATCACCCAGTGCATTGCAAATGATTTATCACTGCTGGGGAGTGAGGCCTACTTAGTCGTACACTGGTCGGAGTGGGGCAGGGCCAGTGTGGTTTCTAGACGATGTGGTGGCTACAAAGGCACTCGgtgagattgcggttatgagtaggtgcggggcttctaagtggcaacctgga Alignment from Pairagon GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTG-ACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG actttctataacctcattgccgactctggctgctttggttttccttccagAGGTCACGATGTGGCACGTTGCATGGCTGATCCTGGGGACGATGTCATCACCCAGTGCATTGCAAATGATTTATCACTGCTGGGGAGTGAGGCCTACTTAGTCGTACACTGGTCGGAGTGGGGCAGGGCCAGTGTGGTTTCTAGACGATGTGGTGGCTACAAAGGCACTCGgtgagattgcggttatgagtaggtgcggggcttctaagtggcaacctgga Alignment from Exonerate_protein2genome GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTG-ACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG actttctataacctcattgccgactctggctgctttggttttccttccagAGGTCACGATGTGGCACGTTGCATGGCTGATCCTGGGGACGATGTCATCACCCAGTGCATTGCAAATGATTTATCACTGCTGGGGAGTGAGGCCTACTTAGTCGTACACTGGTCGGAGTGGGGCAGGGCCAGTGTGGTTTCTAGACGATGTGGTGGCTACAAAGGCACTCGgtgagattgcggttatgagtaggtgcggggcttctaagtggcaacctgga Alignment from Exonerate_coding2genome GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTG-ACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG actttctataacctcattgccgactctggctgctttggttttccttccagAGGTCACGATGTGGCACGTTGCATGGCTGATCCTGGGGACGATGTCATCACCCAGTGCATTGCAAATGATTTATCACTGCTGGGGAGTGAGGCCTACTTAGTCGTACACTGGTCGGAGTGGGGCAGGGCCAGTGTGGTTTCTAGACGATGTGGTGGCTACAAAGGCACTCGgtgagattgcggttatgagtaggtgcggggcttctaagtggcaacctgga Alignment from GeneWise GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTC-GTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG actttctataacctcattgccgactctggctgctttggttttccttccagAGGTCACGATGTGGCACGTTGCATGGCTGATCCTGGGGACGATGTCATCACCCAGTGCATTGCAAATGATTTATCACTGCTGGGGAGTGAGGCCTACTTAGTCGTACACTGGTCGGAGTGGGGCAGGGCCAGTGTGGTTTCTAGACGATGTGGTGGCTACAAAGGCACTCGgtgagattgcggttatgagtaggtgcggggcttctaagtggcaacctgga #### Csf2ra_ID13437_3 --> 0 - 1 Original Alignment CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTC-GGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAg gctcccactgcactatttccccaccctcggaactatctttctctcaacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCGCTGCACCATGGTGTAACACTGGATGTCAATGGCACAGTTCGGGGGTGCAGCCGCGCACTGGAAGCTCAGCTTCGTCAATGAAggtaatgatggatgggggggtttccatgataccatcactaagccaacaagt Alignment from CESAR CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTC-GGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAg gctcccactgcactatttccccaccctcggaactatctttctctcaacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCGCTGCACCATGGTGTAACACTGGATGTCAATGGCACAGTTCGGGGGTGCAGCCGCGCACTGGAAGCTCAGCTTCGTCAATGAAggtaatgatggatgggggggtttccatgataccatcactaagccaacaagt Alignment from Spaln_aa2Genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGC-GCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gctcccactgcactatttccccaccctcggaactatctttctctcaacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCGCTGCACCATGGTGTAACACTGGATGTCAATGGCACAGTTCGGGGGtGCAGCCGCGCACTGGAAGCTCAGCTTCGTCAATGAAGgtaatgatggatgggggggtttccatgataccatcactaagccaacaagt Alignment from Spaln_nt2Genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGT-CGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gctcccactgcactatttccccaccctcggaactatctttctctcaacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCGCTGCACCATGGTGTAACACTGGATGTCAATGGCACAGTTCGGGGGTGCAGCCGCGCACTGGAAGCTCAGCTTCGTCAATGAAGgtaatgatggatgggggggtttccatgataccatcactaagccaacaagt Alignment from Pairagon CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGG-TCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gctcccactgcactatttccccaccctcggaactatctttctctcaacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCGCTGCACCATGGTGTAACACTGGATGTCAATGGCACAGTTCGGGGGTGCAGCCGCGCACTGGAAGCTCAGCTTCGTCAATGAAGgtaatgatggatgggggggtttccatgataccatcactaagccaacaagt Alignment from Exonerate_protein2genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTC-GGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gctcccactgcactatttccccaccctcggaactatctttctctcaacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCGCTGCACCATGGTGTAACACTGGATGTCAATGGCACAGTTCGGGGGTGCAGCCGCGCACTGGAAGCTCAGCTTCGTCAATGAAGgtaatgatggatgggggggtttccatgataccatcactaagccaacaagt Alignment from Exonerate_coding2genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTC-GGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gctcccactgcactatttccccaccctcggaactatctttctctcaacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCGCTGCACCATGGTGTAACACTGGATGTCAATGGCACAGTTCGGGGGTGCAGCCGCGCACTGGAAGCTCAGCTTCGTCAATGAAGgtaatgatggatgggggggtttccatgataccatcactaagccaacaagt Alignment from GeneWise CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACG-GTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCGTCAACGAAG gctcccactgcactatttccccaccctcggaactatctttctctcaacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCGCTGCACCATGGTGTAACACTGGATGTCAATGGCACAGTTCGGGGGTGCAGCCGCGCACTGGAAGCTCAGCTTCGTCAATGAAGgtaatgatggatgggggggtttccatgataccatcactaagccaacaagt #### Csf2ra_ID13438_2 --> 2 - 0 Original Alignment ctCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGG-ACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGC------ACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG tgggcaaagccacttgctaccaaggcactttctgtgcttgtctctttaagctCCAACCACACCATATGTTGGCTCCGCCCTCAACCTGATCTTTGACCCCTGGACCCGGCACACTGACATGGGCCTGCGACACTGCTGCAGGGAATGTCATGGTGATGTCATGCACTGTGACTGTTACCTCACGGGAAGCATCAATACACCGGCGAGTCTCAgtaagtggggctagtatgagagggccatgccccataatgatgtcactccc Alignment from CESAR ctCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGG-ACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGCACCGTG------ACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG tgggcaaagccacttgctaccaaggcactttctgtgcttgtctctttaagctCCAACCACACCATATGTTGGCTCCGCCCTCAACCTGATCTTTGACCCCTGGACCCGGCACACTGACATGGGCCTGCGACACTGCTGCAGGGAATGTCATGGTGATGTCATGCACTGTGACTGTTACCTCACGGGAAGCATCAATACACCGGCGAGTCTCAgtaagtggggctagtatgagagggccatgccccataatgatgtcactccc Alignment from Spaln_aa2Genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGG-ACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGC------ACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG tgggcaaagccacttgctaccaaggcactttctgtgcttgtctctttaagCTCCAACCACACCATATGTTGGCTCCGCCCTCAACCTGATCTTTGACCCCTGGACCCGGcACACTGACATGGGCCTGCGACACTGCTGCAGGGAATGTCATGGTGATGTCATGCACTGTGACTGTTACCTCACGGGAAGCATCAATACACCGGCGAGTCTCAgtaagtggggctagtatgagagggccatgccccataatgatgtcactccc Alignment from Spaln_nt2Genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGG-ACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGCACC------GTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG tgggcaaagccacttgctaccaaggcactttctgtgcttgtctctttaagCTCCAACCACACCATATGTTGGCTCCGCCCTCAACCTGATCTTTGACCCCTGGACCCGGCACACTGACATGGGCCTGCGACACTGCTGCAGGGAATGTCATGGTGATGTCATGCACTGTGACTGTTACCTCACGGGAAGCATCAATACACCGGCGAGTCTCAgtaagtggggctagtatgagagggccatgccccataatgatgtcactccc Alignment from Pairagon CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGG-ACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGCACCGTG------ACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG tgggcaaagccacttgctaccaaggcactttctgtgcttgtctctttaagCTCCAACCACACCATATGTTGGCTCCGCCCTCAACCTGATCTTTGACCCCTGGACCCGGCACACTGACATGGGCCTGCGACACTGCTGCAGGGAATGTCATGGTGATGTCATGCACTGTGACTGTTACCTCACGGGAAGCATCAATACACCGGCGAGTCTCAgtaagtggggctagtatgagagggccatgccccataatgatgtcactccc Alignment from Exonerate_protein2genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGG-ACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGC------ACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG tgggcaaagccacttgctaccaaggcactttctgtgcttgtctctttaagCTCCAACCACACCATATGTTGGCTCCGCCCTCAACCTGATCTTTGACCCCTGGACCCGGCACACTGACATGGGCCTGCGACACTGCTGCAGGGAATGTCATGGTGATGTCATGCACTGTGACTGTTACCTCACGGGAAGCATCAATACACCGGCGAGTCTCAgtaagtggggctagtatgagagggccatgccccataatgatgtcactccc Alignment from Exonerate_coding2genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGG-ACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGC------ACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG tgggcaaagccacttgctaccaaggcactttctgtgcttgtctctttaagCTCCAACCACACCATATGTTGGCTCCGCCCTCAACCTGATCTTTGACCCCTGGACCCGGCACACTGACATGGGCCTGCGACACTGCTGCAGGGAATGTCATGGTGATGTCATGCACTGTGACTGTTACCTCACGGGAAGCATCAATACACCGGCGAGTCTCAgtaagtggggctagtatgagagggccatgccccataatgatgtcactccc Alignment from GeneWise CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGG-ACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGCACCGTGACC------TCGCGGGAGGCGGGGATACACCGGCGAGTCTCG tgggcaaagccacttgctaccaaggcactttctgtgcttgtctctttaagCTCCAACCACACCATATGTTGGCTCCGCCCTCAACCTGATCTTTGACCCCTGGACCCGGCACACTGACATGGGCCTGCGACACTGCTGCAGGGAATGTCATGGTGATGTCATGCACTGTGACTGTTACCTCACGGGAAGCATCAATACACCGGCGAGTCTCAgtaagtggggctagtatgagagggccatgccccataatgatgtcactccc #### Ctsf_ID674_2 --> 0 - 0 Original Alignment GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCC-CTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaagggaggcttggccagactctctctcttctacatgcagGCTGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAACGATCCCCCTGGTGTGCCCACTTCCTGAAACAAAGAAAACTGTGgtaggcaagtggtcacctattatgtaccctgggtagtaaataattatact Alignment from CESAR GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGAT-CCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaagggaggcttggccagactctctctcttctacatgcagGCTGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAACGATCCCCCTGGTGTGCCCACTTCCTGAAACAAAGAAAACTGTGgtaggcaagtggtcacctattatgtaccctgggtagtaaataattatact Alignment from Spaln_aa2Genome GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGAT-CCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaagggaggcttggccagactctctctcttctacatgcagGCTGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAACGATcCCCCTGGTGTGCCCACTTCCTGAAACAAAGAAAACTGTGgtaggcaagtggtcacctattatgtaccctgggtagtaaataattatact Alignment from Spaln_nt2Genome GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCC-CTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaagggaggcttggccagactctctctcttctacatgcagGCTGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAACGATCCCCCTGGTGTGCCCACTTCCTGAAACAAAGAAAACTGTGgtaggcaagtggtcacctattatgtaccctgggtagtaaataattatact Alignment from Pairagon GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGAT-CCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaagggaggcttggccagactctctctcttctacatgcagGCTGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAACGATCCCCCTGGTGTGCCCACTTCCTGAAACAAAGAAAACTGTGgtaggcaagtggtcacctattatgtaccctgggtagtaaataattatact Alignment from Exonerate_protein2genome GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGAT-CCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaagggaggcttggccagactctctctcttctacatgcagGCTGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAACGATCCCCCTGGTGTGCCCACTTCCTGAAACAAAGAAAACTGTGgtaggcaagtggtcacctattatgtaccctgggtagtaaataattatact Alignment from Exonerate_coding2genome GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGAT-CCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaagggaggcttggccagactctctctcttctacatgcagGCTGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAACGATCCCCCTGGTGTGCCCACTTCCTGAAACAAAGAAAACTGTGgtaggcaagtggtcacctattatgtaccctgggtagtaaataattatact Alignment from GeneWise GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCC-CTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaagggggaagggaggcttggccagactctctctcttctacatgcagGCTGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAACGATCCCCCTGGTGTGCCCACTTCCTGAAACAAAGAAAACTGTGgtaggcaagtggtcacctattatgtaccctgggtagtaaataattatact #### Ctsf_ID675_3 --> 0 - 1 Original Alignment CTCTGCAGTTTTGAAGTC-CTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAg tgatattgctgggatctggtccaagttttagtgtcttgtcttgtctccagCTCTGTAGTTTTGAAGCCCCTTGAAGAACTCAAAGAACACTTGCTCCTGAGGAGGGACTGTAGCCCAGTGAATGCCAGGGTCACAggtgagtgattactcaaggagactgggaagagcccagatcatacccaagta Alignment from CESAR CTCTGCAGTTTTGAAGTC-CTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAg tgatattgctgggatctggtccaagttttagtgtcttgtcttgtctccagCTCTGTAGTTTTGAAGCCCCTTGAAGAACTCAAAGAACACTTGCTCCTGAGGAGGGACTGTAGCCCAGTGAATGCCAGGGTCACAggtgagtgattactcaaggagactgggaagagcccagatcatacccaagta Alignment from Spaln_aa2Genome CTCTGCAGTTTTGAAGTC-CTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG tgatattgctgggatctggtccaagttttagtgtcttgtcttgtctccagCTCTGTAGTTTTGAAGCCcCTTGAAGAACTCAAAGAACACTTGCTCCTGAGGAGGGACTGTAGCCCAGTGAATGCCAGGGTCACAGgtgagtgattactcaaggagactgggaagagcccagatcatacccaagta Alignment from Spaln_nt2Genome CTCTGCAGTTTTGAAGTCC-TGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG tgatattgctgggatctggtccaagttttagtgtcttgtcttgtctccagCTCTGTAGTTTTGAAGCCCCTTGAAGAACTCAAAGAACACTTGCTCCTGAGGAGGGACTGTAGCCCAGTGAATGCCAGGGTCACAGgtgagtgattactcaaggagactgggaagagcccagatcatacccaagta Alignment from Pairagon CTCTGCAGTTTTGAAG-TCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG tgatattgctgggatctggtccaagttttagtgtcttgtcttgtctccagCTCTGTAGTTTTGAAGCCCCTTGAAGAACTCAAAGAACACTTGCTCCTGAGGAGGGACTGTAGCCCAGTGAATGCCAGGGTCACAGgtgagtgattactcaaggagactgggaagagcccagatcatacccaagta Alignment from Exonerate_protein2genome CTCTGCAGTTTTGAAGTC-CTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG tgatattgctgggatctggtccaagttttagtgtcttgtcttgtctccagCTCTGTAGTTTTGAAGCCCCTTGAAGAACTCAAAGAACACTTGCTCCTGAGGAGGGACTGTAGCCCAGTGAATGCCAGGGTCACAGgtgagtgattactcaaggagactgggaagagcccagatcatacccaagta Alignment from Exonerate_coding2genome CTCTGCAGTTTTGAAGTC-CTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG tgatattgctgggatctggtccaagttttagtgtcttgtcttgtctccagCTCTGTAGTTTTGAAGCCCCTTGAAGAACTCAAAGAACACTTGCTCCTGAGGAGGGACTGTAGCCCAGTGAATGCCAGGGTCACAGgtgagtgattactcaaggagactgggaagagcccagatcatacccaagta Alignment from GeneWise ----------TTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG tgatattgctgggatctggtccaagttttagtgtcttgtcttgtctccagCTCTGTAGTTTTGAAGCCCCTTGAAGAACTCAAAGAACACTTGCTCCTGAGGAGGGACTGTAGCCCAGTGAATGCCAGGGTCACAGgtgagtgattactcaaggagactgggaagagcccagatcatacccaagta #### Ctsf_ID676_4 --> 2 - 0 Original Alignment agTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGAC-AAGGATCCCCTGCCCCAG acccaagtaaaatctggccttaaatacttttctctcccttccacccctagagTTTAGAAATGCAACCTTTGGCTCATTCCTACCACTGCTGGACCAAAGATCCCCTGCCCCAGgtcagaatgctgtgatgaggagagacaacagctccttaattctgtttccc Alignment from CESAR agTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGAC-AAGGATCCCCTGCCCCAG acccaagtaaaatctggccttaaatacttttctctcccttccacccctagagTTTAGAAATGCAACCTTTGGCTCATTCCTACCACTGCTGGACCAAAGATCCCCTGCCCCAGgtcagaatgctgtgatgaggagagacaacagctccttaattctgtttccc Alignment from Spaln_aa2Genome AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGAC-AAGGATCCCCTGCCCCAG acccaagtaaaatctggccttaaatacttttctctcccttccacccctagAGTTTAGAAATGCAACCTTTGGCTCATTCCTACCACTGCTGGACcAAAGATCCCCTGCCCCAGgtcagaatgctgtgatgaggagagacaacagctccttaattctgtttccc Alignment from Spaln_nt2Genome AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGAC-AAGGATCCCCTGCCCCAG acccaagtaaaatctggccttaaatacttttctctcccttccacccctagAGTTTAGAAATGCAACCTTTGGCTCATTCCTACCACTGCTGGACCAAAGATCCCCTGCCCCAGgtcagaatgctgtgatgaggagagacaacagctccttaattctgtttccc Alignment from Pairagon AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGA-CAAGGATCCCCTGCCCCAG acccaagtaaaatctggccttaaatacttttctctcccttccacccctagAGTTTAGAAATGCAACCTTTGGCTCATTCCTACCACTGCTGGACCAAAGATCCCCTGCCCCAGgtcagaatgctgtgatgaggagagacaacagctccttaattctgtttccc Alignment from Exonerate_protein2genome AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGAC-AAGGATCCCCTGCCCCAG acccaagtaaaatctggccttaaatacttttctctcccttccacccctagAGTTTAGAAATGCAACCTTTGGCTCATTCCTACCACTGCTGGACCAAAGATCCCCTGCCCCAGgtcagaatgctgtgatgaggagagacaacagctccttaattctgtttccc Alignment from Exonerate_coding2genome AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGAC-AAGGATCCCCTGCCCCAG acccaagtaaaatctggccttaaatacttttctctcccttccacccctagAGTTTAGAAATGCAACCTTTGGCTCATTCCTACCACTGCTGGACCAAAGATCCCCTGCCCCAGgtcagaatgctgtgatgaggagagacaacagctccttaattctgtttccc Alignment from GeneWise AGTTTAGAAATGCGACTTTCAGCTCATTCCTTCCATTGTTGGAC---AAGGATCCCCTGCCC- acccaagtaaaatctggccttaaatacttttctctcccttccacccctagAGTTTAGAAATGCAACCTTTGGCTCATTCCTACCACTGCTGGACCAAAGATCCCCTGCCCCAGgtcagaatgctgtgatgaggagagacaacagctccttaattctgtttccc #### Ctsf_ID679_7 --> 2 - 0 Original Alignment agGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCA-GCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTG------AAGAACCAG atgggtctggcttcaagtactcatctctcttccctcctgtttgcctgcagagGAAGAATTCCACACCATCTACCTGATTCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCACGCCAAGTCCATAAATGAGCTTGCCCCACCTGAATGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAAGTGAAGAACCAGgtgtgtgtaacttggaattggaagaggttgcaaggtattggagagctgac Alignment from CESAR agGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCA-GCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACT------GAAGTGAAGAACCAG atgggtctggcttcaagtactcatctctcttccctcctgtttgcctgcagagGAAGAATTCCACACCATCTACCTGATTCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCACGCCAAGTCCATAAATGAGCTTGCCCCACCTGAATGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAAGTGAAGAACCAGgtgtgtgtaacttggaattggaagaggttgcaaggtattggagagctgac Alignment from Spaln_aa2Genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCA-GCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACT------GAAGTGAAGAACCAG atgggtctggcttcaagtactcatctctcttccctcctgtttgcctgcagAGGAAGAATTCCACACCATCTACCTGATTCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAcGCCAAGTCCATAAATGAGCTTGCCCCACCTGAATGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAAGTGAAGAACCAGgtgtgtgtaacttggaattggaagaggttgcaaggtattggagagctgac Alignment from Spaln_nt2Genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCA-GCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCAC------TGAAGTGAAGAACCAG atgggtctggcttcaagtactcatctctcttccctcctgtttgcctgcagAGGAAGAATTCCACACCATCTACCTGATTCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCACGCCAAGTCCATAAATGAGCTTGCCCCACCTGAATGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAAGTGAAGAACCAGgtgtgtgtaacttggaattggaagaggttgcaaggtattggagagctgac Alignment from Pairagon AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCA-GCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCAC------TGAAGTGAAGAACCAG atgggtctggcttcaagtactcatctctcttccctcctgtttgcctgcagAGGAAGAATTCCACACCATCTACCTGATTCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCACGCCAAGTCCATAAATGAGCTTGCCCCACCTGAATGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAAGTGAAGAACCAGgtgtgtgtaacttggaattggaagaggttgcaaggtattggagagctgac Alignment from Exonerate_protein2genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCA-GCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACT------GAAGTGAAGAACCAG atgggtctggcttcaagtactcatctctcttccctcctgtttgcctgcagAGGAAGAATTCCACACCATCTACCTGATTCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCACGCCAAGTCCATAAATGAGCTTGCCCCACCTGAATGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAAGTGAAGAACCAGgtgtgtgtaacttggaattggaagaggttgcaaggtattggagagctgac Alignment from Exonerate_coding2genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCA-GCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACT------GAAGTGAAGAACCAG atgggtctggcttcaagtactcatctctcttccctcctgtttgcctgcagAGGAAGAATTCCACACCATCTACCTGATTCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCACGCCAAGTCCATAAATGAGCTTGCCCCACCTGAATGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAAGTGAAGAACCAGgtgtgtgtaacttggaattggaagaggttgcaaggtattggagagctgac Alignment from GeneWise AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCA-GCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGGGCTGTCACTGAAGTG------AAGAACCAGGG atgggtctggcttcaagtactcatctctcttccctcctgtttgcctgcagAGGAAGAATTCCACACCATCTACCTGATTCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCACGCCAAGTCCATAAATGAGCTTGCCCCACCTGAATGGGATTGGAGGCAGAAAGGGGCTGTCACTGAAGTTGAAGTGAAGAACCAGGTgtgtgtaacttggaattggaagaggttgcaaggtattggagagctgac #### Ctsf_ID680_8 --> 0 - 1 Original Alignment GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAG-GGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGg ctgcagagggccttaagagagagccctgtaactctttcttcatcttgtagGGCAGTATGTGTGGTTCCTGCTGGGCCTTTTCTGTCACTGGCAATGTGGAGCGGCCAGTGGTTCCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGggtaagtatcctgatccatccccctttttccagaccaacccctccagaggg Alignment from CESAR GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAG-GGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGg ctgcagagggccttaagagagagccctgtaactctttcttcatcttgtagGGCAGTATGTGTGGTTCCTGCTGGGCCTTTTCTGTCACTGGCAATGTGGAGCGGCCAGTGGTTCCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGggtaagtatcctgatccatccccctttttccagaccaacccctccagaggg Alignment from Spaln_aa2Genome GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAG-GGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG ctgcagagggccttaagagagagccctgtaactctttcttcatcttgtagGGCAGTATGTGTGGTTCCTGCTGGGCCTTTTCTGTCACTGGCAATGTGGAGcGGCCAGTGGTTCCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGGgtaagtatcctgatccatccccctttttccagaccaacccctccagaggg Alignment from Spaln_nt2Genome GGCA---TGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAG-GGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG ctgcagagggccttaagagagagccctgtaactctttcttcatcttgtagGGCAGTATGTGTGGTTCCTGCTGGGCCTTTTCTGTCACTGGCAATGTGGAGCGGCCAGTGGTTCCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGGgtaagtatcctgatccatccccctttttccagaccaacccctccagaggg Alignment from Pairagon GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAG-GGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG ctgcagagggccttaagagagagccctgtaactctttcttcatcttgtagGGCAGTATGTGTGGTTCCTGCTGGGCCTTTTCTGTCACTGGCAATGTGGAGCGGCCAGTGGTTCCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGGgtaagtatcctgatccatccccctttttccagaccaacccctccagaggg Alignment from Exonerate_protein2genome GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAG-GGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG ctgcagagggccttaagagagagccctgtaactctttcttcatcttgtagGGCAGTATGTGTGGTTCCTGCTGGGCCTTTTCTGTCACTGGCAATGTGGAGCGGCCAGTGGTTCCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGGgtaagtatcctgatccatccccctttttccagaccaacccctccagaggg Alignment from Exonerate_coding2genome GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAG-GGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG ctgcagagggccttaagagagagccctgtaactctttcttcatcttgtagGGCAGTATGTGTGGTTCCTGCTGGGCCTTTTCTGTCACTGGCAATGTGGAGCGGCCAGTGGTTCCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGGgtaagtatcctgatccatccccctttttccagaccaacccctccagaggg Alignment from GeneWise GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTG-GAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG ctgcagagggccttaagagagagccctgtaactctttcttcatcttgtagGGCAGTATGTGTGGTTCCTGCTGGGCCTTTTCTGTCACTGGCAATGTGGAGCGGCCAGTGGTTCCTGAACCGGGGAACTCTGCTATCCCTGTCAGAGCAGGgtaagtatcctgatccatccccctttttccagaccaacccctccagaggg #### Ctsf_ID681_9 --> 2 - 1 Original Alignment agCTCTTGGATTGTGACAAG-GTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGg cagaccaacccctccagagggtcccttggctctgttttctggttgtctagagCTCTCGGACTGTGGCAAGCGAGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAATGCCTATGCAGCCATAAAGAATCTGggtaagatggatctagctcgggaaagcaacaagtaccatctaattgtaggt Alignment from CESAR agCTCTTGGATTGTGACAAG-GTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGg cagaccaacccctccagagggtcccttggctctgttttctggttgtctagagCTCTCGGACTGTGGCAAGCGAGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAATGCCTATGCAGCCATAAAGAATCTGggtaagatggatctagctcgggaaagcaacaagtaccatctaattgtaggt Alignment from Spaln_aa2Genome AGCTCTTGGATTGTGACAAG-GTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagaccaacccctccagagggtcccttggctctgttttctggttgtctagAGCTCTCGGACTGTGGCAAGcGAGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAATGCCTATGCAGCCATAAAGAATCTGGgtaagatggatctagctcgggaaagcaacaagtaccatctaattgtaggt Alignment from Spaln_nt2Genome AGCTCTTGGATTGTGACAAG-GTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagaccaacccctccagagggtcccttggctctgttttctggttgtctagAGCTCTCGGACTGTGGCAAGCGAGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAATGCCTATGCAGCCATAAAGAATCTGGgtaagatggatctagctcgggaaagcaacaagtaccatctaattgtaggt Alignment from Pairagon AGCTCTTGGATTGTGACAAG-GTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagaccaacccctccagagggtcccttggctctgttttctggttgtctagAGCTCTCGGACTGTGGCAAGCGAGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAATGCCTATGCAGCCATAAAGAATCTGGgtaagatggatctagctcgggaaagcaacaagtaccatctaattgtaggt Alignment from Exonerate_protein2genome AGCTCTTGGATTGTGACAAG-GTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagaccaacccctccagagggtcccttggctctgttttctggttgtctagAGCTCTCGGACTGTGGCAAGCGAGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAATGCCTATGCAGCCATAAAGAATCTGGgtaagatggatctagctcgggaaagcaacaagtaccatctaattgtaggt Alignment from Exonerate_coding2genome AGCTCTTGGATTGTGACAAG-GTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagaccaacccctccagagggtcccttggctctgttttctggttgtctagAGCTCTCGGACTGTGGCAAGCGAGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAATGCCTATGCAGCCATAAAGAATCTGGgtaagatggatctagctcgggaaagcaacaagtaccatctaattgtaggt Alignment from GeneWise -CTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAACGCCTATGCAGCCATAAAGAATTTGG cagaccaacccctccagagggtcccttggctctgttttctggttgtctagagCTCTCGGACTGTGGCAAGCGAGGACAAGGCCTGCTTGGGTGGATTGCCCTCCAATGCCTATGCAGCCATAAAGAATCTGGgtaagatggatctagctcgggaaagcaacaagtaccatctaattgtaggt #### Ctsf_ID684_12 --> 0 - 1 Original Alignment TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCC-CTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACc caacatgatcccacttttgatgctggccttttctctaaattgtgtaacagTTCTACCATCATGGAATTGCTCACCCATTCCGGCCCCCTCTGCAGCCCTTGGCTCATTGATCATGCAGTGTTGCTAGTAGGCTATGGCAACcgtcagttctgttgtcttcctgcctcccttccctctgcctcaggctacggt Alignment from CESAR TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCC-CTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACc caacatgatcccacttttgatgctggccttttctctaaattgtgtaacagTTCTACCATCATGGAATTGCTCACCCATTCCGGCCCCCTCTGCAGCCCTTGGCTCATTGATCATGCAGTGTTGCTAGTAGGCTATGGCAACcgtcagttctgttgtcttcctgcctcccttccctctgcctcaggctacggt Alignment from Spaln_aa2Genome TTCTATCGCCACGGGATTGCTCACCCATTCCGG-CCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC caacatgatcccacttttgatgctggccttttctctaaattgtgtaacagTTCTACCATCATGGAATTGCTCACCCATTCCGGcCCCCTCTGCAGCCCTTGGCTCATTGATCATGCAGTGTTGCTAGTAGGCTATGGCAACCgtcagttctgttgtcttcctgcctcccttccctctgcctcaggctacggt Alignment from Spaln_nt2Genome TTCTATCGCCACGGGATTGCTCACCCATTCCGG-CCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC caacatgatcccacttttgatgctggccttttctctaaattgtgtaacagTTCTACCATCATGGAATTGCTCACCCATTCCGGCCCCCTCTGCAGCCCTTGGCTCATTGATCATGCAGTGTTGCTAGTAGGCTATGGCAACCgtcagttctgttgtcttcctgcctcccttccctctgcctcaggctacggt Alignment from Pairagon TTCTATCGCCACGGGATTGCTCACCCATTCCGG-CCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC caacatgatcccacttttgatgctggccttttctctaaattgtgtaacagTTCTACCATCATGGAATTGCTCACCCATTCCGGCCCCCTCTGCAGCCCTTGGCTCATTGATCATGCAGTGTTGCTAGTAGGCTATGGCAACCgtcagttctgttgtcttcctgcctcccttccctctgcctcaggctacggt Alignment from Exonerate_protein2genome TTCTATCGCCACGGGATTGCTCACCCATTCCGG-CCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC caacatgatcccacttttgatgctggccttttctctaaattgtgtaacagTTCTACCATCATGGAATTGCTCACCCATTCCGGCCCCCTCTGCAGCCCTTGGCTCATTGATCATGCAGTGTTGCTAGTAGGCTATGGCAACCgtcagttctgttgtcttcctgcctcccttccctctgcctcaggctacggt Alignment from Exonerate_coding2genome TTCTATCGCCACGGGATTGCTCACCCATTCCGG-CCCCTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC caacatgatcccacttttgatgctggccttttctctaaattgtgtaacagTTCTACCATCATGGAATTGCTCACCCATTCCGGCCCCCTCTGCAGCCCTTGGCTCATTGATCATGCAGTGTTGCTAGTAGGCTATGGCAACCgtcagttctgttgtcttcctgcctcccttccctctgcctcaggctacggt Alignment from GeneWise TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCC-CTCTGCAGCCCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC caacatgatcccacttttgatgctggccttttctctaaattgtgtaacagTTCTACCATCATGGAATTGCTCACCCATTCCGGCCCCCTCTGCAGCCCTTGGCTCATTGATCATGCAGTGTTGCTAGTAGGCTATGGCAACCgtcagttctgttgtcttcctgcctcccttccctctgcctcaggctacggt #### Ctsw_ID1017_9 --> 0 - 0 Original Alignment CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTC------TTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTC-TTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG acagagattttgttgtacaggactcagccctttacctctgttccctccagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTGTTGCTCTTGCTGGTGGGTTTTGGTAAGGAGGAAGAGGGCATGCAAACAGGGACAGTCCTTGTCCCATTCTCAAAAACGTTGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCATGGGGAGCCCACTGGGGTGAGAAGgtaattgtgtggaacagcaatgaggcagaccataatacctctttttggct Alignment from CESAR CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTC------TTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTC-TTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG acagagattttgttgtacaggactcagccctttacctctgttccctccagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTGTTGCTCTTGCTGGTGGGTTTTGGTAAGGAGGAAGAGGGCATGCAAACAGGGACAGTCCTTGTCCCATTCTCAAAAACGTTGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCATGGGGAGCCCACTGGGGTGAGAAGgtaattgtgtggaacagcaatgaggcagaccataatacctctttttggct Alignment from Spaln_aa2Genome CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTCTTG------CTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTC-TTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG acagagattttgttgtacaggactcagccctttacctctgttccctccagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTGTTGCTCTTGCTGGTGGGTTTTGGTAAGGAGGAAGAGGGCATGCAAACAGGGACAGTCcTTGTCCCATTCTCAAAAACGTTGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCATGGGGAGCCCACTGGGGTGAGAAGgtaattgtgtggaacagcaatgaggcagaccataatacctctttttggct Alignment from Spaln_nt2Genome CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTC------TTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGT-CTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG acagagattttgttgtacaggactcagccctttacctctgttccctccagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTGTTGCTCTTGCTGGTGGGTTTTGGTAAGGAGGAAGAGGGCATGCAAACAGGGACAGTCCTTGTCCCATTCTCAAAAACGTTGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCATGGGGAGCCCACTGGGGTGAGAAGgtaattgtgtggaacagcaatgaggcagaccataatacctctttttggct Alignment from Pairagon CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTG------TCTTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGT-CTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG acagagattttgttgtacaggactcagccctttacctctgttccctccagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTGTTGCTCTTGCTGGTGGGTTTTGGTAAGGAGGAAGAGGGCATGCAAACAGGGACAGTCCTTGTCCCATTCTCAAAAACGTTGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCATGGGGAGCCCACTGGGGTGAGAAGgtaattgtgtggaacagcaatgaggcagaccataatacctctttttggct Alignment from Exonerate_protein2genome CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTC------TTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTC-TTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG acagagattttgttgtacaggactcagccctttacctctgttccctccagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTGTTGCTCTTGCTGGTGGGTTTTGGTAAGGAGGAAGAGGGCATGCAAACAGGGACAGTCCTTGTCCCATTCTCAAAAACGTTGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCATGGGGAGCCCACTGGGGTGAGAAGgtaattgtgtggaacagcaatgaggcagaccataatacctctttttggct Alignment from Exonerate_coding2genome CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTC------TTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTC-TTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG acagagattttgttgtacaggactcagccctttacctctgttccctccagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTGTTGCTCTTGCTGGTGGGTTTTGGTAAGGAGGAAGAGGGCATGCAAACAGGGACAGTCCTTGTCCCATTCTCAAAAACGTTGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCATGGGGAGCCCACTGGGGTGAGAAGgtaattgtgtggaacagcaatgaggcagaccataatacctctttttggct Alignment from GeneWise CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTCTTGCTG------GTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTG-TCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG acagagattttgttgtacaggactcagccctttacctctgttccctccagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTGTTGCTCTTGCTGGTGGGTTTTGGTAAGGAGGAAGAGGGCATGCAAACAGGGACAGTCCTTGTCCCATTCTCAAAAACGTTGCCACTCCTTCTCATACTGGGTCTTGAAAAACTCATGGGGAGCCCACTGGGGTGAGAAGgtaattgtgtggaacagcaatgaggcagaccataatacctctttttggct #### Ctsw_ID1018_8 --> 2 - 0 Original Alignment caATTGCCCACTACCTGGCCGTGCATGGACCTATCACC-GTGACCATCAACATGAAACTACTCCAG agtagtcttgacatggcaccttcaaggcttgtgtgtcttgtctcgcacagtaATTGCCCACTATCTGGCTGCACATGGACCCATCACTCGTGACCATCAATATGAAACTACTTCAGgtaaagagcaaagtaaggtgacaaggagaggtgccctggagaagctcttc Alignment from CESAR caATTGCCCACTACCTGGCCGTGCATGGACCTATCACC-GTGACCATCAACATGAAACTACTCCAG agtagtcttgacatggcaccttcaaggcttgtgtgtcttgtctcgcacagtaATTGCCCACTATCTGGCTGCACATGGACCCATCACTCGTGACCATCAATATGAAACTACTTCAGgtaaagagcaaagtaaggtgacaaggagaggtgccctggagaagctcttc Alignment from Spaln_aa2Genome CAATTGCCCACTACCTGGCCGTGCATGGACCTATCACC-GTGACCATCAACATGAAACTACTCCAG agtagtcttgacatggcaccttcaaggcttgtgtgtcttgtctcgcacagTAATTGCCCACTATCTGGCTGCACATGGACCCATCACTcGTGACCATCAATATGAAACTACTTCAGgtaaagagcaaagtaaggtgacaaggagaggtgccctggagaagctcttc Alignment from Spaln_nt2Genome CAATTGCCCACTACCTGGCCGTGCATGGACCTATCAC-CGTGACCATCAACATGAAACTACTCCAG agtagtcttgacatggcaccttcaaggcttgtgtgtcttgtctcgcacagTAATTGCCCACTATCTGGCTGCACATGGACCCATCACTCGTGACCATCAATATGAAACTACTTCAGgtaaagagcaaagtaaggtgacaaggagaggtgccctggagaagctcttc Alignment from Pairagon CAATTGCCCACTACCTGGCCGTGCATGGACCTATCAC-CGTGACCATCAACATGAAACTACTCCAG agtagtcttgacatggcaccttcaaggcttgtgtgtcttgtctcgcacagTAATTGCCCACTATCTGGCTGCACATGGACCCATCACTCGTGACCATCAATATGAAACTACTTCAGgtaaagagcaaagtaaggtgacaaggagaggtgccctggagaagctcttc Alignment from Exonerate_protein2genome CAATTGCCCACTACCTGGCCGTGCATGGACCTATCACC-GTGACCATCAACATGAAACTACTCCAG agtagtcttgacatggcaccttcaaggcttgtgtgtcttgtctcgcacagTAATTGCCCACTATCTGGCTGCACATGGACCCATCACTCGTGACCATCAATATGAAACTACTTCAGgtaaagagcaaagtaaggtgacaaggagaggtgccctggagaagctcttc Alignment from Exonerate_coding2genome CAATTGCCCACTACCTGGCCGTGCATGGACCTATCACC-GTGACCATCAACATGAAACTACTCCAG agtagtcttgacatggcaccttcaaggcttgtgtgtcttgtctcgcacagTAATTGCCCACTATCTGGCTGCACATGGACCCATCACTCGTGACCATCAATATGAAACTACTTCAGgtaaagagcaaagtaaggtgacaaggagaggtgccctggagaagctcttc Alignment from GeneWise CAATTGCCCACTACCTGGCCGTGCATGGACCTATCACC-GTGACCATCAACATGAAACTACTCCAG agtagtcttgacatggcaccttcaaggcttgtgtgtcttgtctcgcacagTAATTGCCCACTATCTGGCTGCACATGGACCCATCACTCGTGACCATCAATATGAAACTACTTCAGgtaaagagcaaagtaaggtgacaaggagaggtgccctggagaagctcttc #### Ctsw_ID1023_3 --> 2 - 1 Original Alignment agTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTA-CAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAg tagtagccacttcctgtctcaagactgataattattcttcattttttcagagTACACTCACCGTCTGAGCATCTTTGCCCACAACCTGGCTCAGGCTCAAAGGCTACCAGCAAGAAGACTTGGGTACTGCTGAGCTTGGAGAGACCCCATTCAGTGACCTCACCagtgaggaggtgggtgatcggcagatgtacaagggaaatttcccaccagaa Alignment from CESAR agTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTA-CAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAg tagtagccacttcctgtctcaagactgataattattcttcattttttcagagTACACTCACCGTCTGAGCATCTTTGCCCACAACCTGGCTCAGGCTCAAAGGCTACCAGCAAGAAGACTTGGGTACTGCTGAGCTTGGAGAGACCCCATTCAGTGACCTCACCagtgaggaggtgggtgatcggcagatgtacaagggaaatttcccaccagaa Alignment from Spaln_aa2Genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTA-CAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG tagtagccacttcctgtctcaagactgataattattcttcattttttcagAGTACACTCACCGTCTGAGCATCTTTGCCCACAACCTGGCTCAGGCTCAAAGGCTAcCAGCAAGAAGACTTGGGTACTGCTGAGCTTGGAGAGACCCCATTCAGTGACCTCACCAgtgaggaggtgggtgatcggcagatgtacaagggaaatttcccaccagaa Alignment from Spaln_nt2Genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTA-CAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG tagtagccacttcctgtctcaagactgataattattcttcattttttcagAGTACACTCACCGTCTGAGCATCTTTGCCCACAACCTGGCTCAGGCTCAAAGGCTACCAGCAAGAAGACTTGGGTACTGCTGAGCTTGGAGAGACCCCATTCAGTGACCTCACCAgtgaggaggtgggtgatcggcagatgtacaagggaaatttcccaccagaa Alignment from Pairagon AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTA-CAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG tagtagccacttcctgtctcaagactgataattattcttcattttttcagAGTACACTCACCGTCTGAGCATCTTTGCCCACAACCTGGCTCAGGCTCAAAGGCTACCAGCAAGAAGACTTGGGTACTGCTGAGCTTGGAGAGACCCCATTCAGTGACCTCACCAgtgaggaggtgggtgatcggcagatgtacaagggaaatttcccaccagaa Alignment from Exonerate_protein2genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTA-CAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG tagtagccacttcctgtctcaagactgataattattcttcattttttcagAGTACACTCACCGTCTGAGCATCTTTGCCCACAACCTGGCTCAGGCTCAAAGGCTACCAGCAAGAAGACTTGGGTACTGCTGAGCTTGGAGAGACCCCATTCAGTGACCTCACCAgtgaggaggtgggtgatcggcagatgtacaagggaaatttcccaccagaa Alignment from Exonerate_coding2genome AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGGCTA-CAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG tagtagccacttcctgtctcaagactgataattattcttcattttttcagAGTACACTCACCGTCTGAGCATCTTTGCCCACAACCTGGCTCAGGCTCAAAGGCTACCAGCAAGAAGACTTGGGTACTGCTGAGCTTGGAGAGACCCCATTCAGTGACCTCACCAgtgaggaggtgggtgatcggcagatgtacaagggaaatttcccaccagaa Alignment from GeneWise AGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAGGCTCAAAGG-CTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAGAGGAGGAG tagtagccacttcctgtctcaagactgataattattcttcattttttcagAGTACACTCACCGTCTGAGCATCTTTGCCCACAACCTGGCTCAGGCTCAAAGGCTACCAGCAAGAAGACTTGGGTACTGCTGAGCTTGGAGAGACCCCATTCAGTGACCTCACCAGTGAGGAGgtgggtgatcggcagatgtacaagggaaatttcccaccagaa #### Cyp26a1_ID7415_3 --> 0 - 0 Original Alignment GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTC-ATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG agaggctgaatgaagaaaggattgtagcctttatattatattgtccccagGTTATTATGCAGGCATTCAGCCGTGAGGCACTCCAGTGTTACGTCCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACGTGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCCATGTTCCGCATTGCCATGCGCATCCTGCTAGGCTGTGAGCCAGGCCCAGCGGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGGCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTTAGCGGTTTGTACCGTgtaagtgtgatttggggagttagagtctgcacgggcaaaggcagttgact Alignment from CESAR GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTC-ATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG agaggctgaatgaagaaaggattgtagcctttatattatattgtccccagGTTATTATGCAGGCATTCAGCCGTGAGGCACTCCAGTGTTACGTCCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACGTGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCCATGTTCCGCATTGCCATGCGCATCCTGCTAGGCTGTGAGCCAGGCCCAGCGGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGGCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTTAGCGGTTTGTACCGTgtaagtgtgatttggggagttagagtctgcacgggcaaaggcagttgact Alignment from Spaln_aa2Genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTC-ATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG agaggctgaatgaagaaaggattgtagcctttatattatattgtccccagGTTATTATGCAGGCATTCAGCCGTGAGGCACTCCAGTGTTACGTCCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACGTGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCcATGTTCCGCATTGCCATGCGCATCCTGCTAGGCTGTGAGCCAGGCCCAGCGGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGGCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTTAGCGGTTTGTACCGTgtaagtgtgatttggggagttagagtctgcacgggcaaaggcagttgact Alignment from Spaln_nt2Genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCT-CATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG agaggctgaatgaagaaaggattgtagcctttatattatattgtccccagGTTATTATGCAGGCATTCAGCCGTGAGGCACTCCAGTGTTACGTCCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACGTGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCCATGTTCCGCATTGCCATGCGCATCCTGCTAGGCTGTGAGCCAGGCCCAGCGGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGGCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTTAGCGGTTTGTACCGTgtaagtgtgatttggggagttagagtctgcacgggcaaaggcagttgact Alignment from Pairagon GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCT-CATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG agaggctgaatgaagaaaggattgtagcctttatattatattgtccccagGTTATTATGCAGGCATTCAGCCGTGAGGCACTCCAGTGTTACGTCCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACGTGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCCATGTTCCGCATTGCCATGCGCATCCTGCTAGGCTGTGAGCCAGGCCCAGCGGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGGCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTTAGCGGTTTGTACCGTgtaagtgtgatttggggagttagagtctgcacgggcaaaggcagttgact Alignment from Exonerate_protein2genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTC-ATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG agaggctgaatgaagaaaggattgtagcctttatattatattgtccccagGTTATTATGCAGGCATTCAGCCGTGAGGCACTCCAGTGTTACGTCCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACGTGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCCATGTTCCGCATTGCCATGCGCATCCTGCTAGGCTGTGAGCCAGGCCCAGCGGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGGCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTTAGCGGTTTGTACCGTgtaagtgtgatttggggagttagagtctgcacgggcaaaggcagttgact Alignment from Exonerate_coding2genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTC-ATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG agaggctgaatgaagaaaggattgtagcctttatattatattgtccccagGTTATTATGCAGGCATTCAGCCGTGAGGCACTCCAGTGTTACGTCCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACGTGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCCATGTTCCGCATTGCCATGCGCATCCTGCTAGGCTGTGAGCCAGGCCCAGCGGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGGCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTTAGCGGTTTGTACCGTgtaagtgtgatttggggagttagagtctgcacgggcaaaggcagttgact Alignment from GeneWise GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGC-CTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG agaggctgaatgaagaaaggattgtagcctttatattatattgtccccagGTTATTATGCAGGCATTCAGCCGTGAGGCACTCCAGTGTTACGTCCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACGTGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCCATGTTCCGCATTGCCATGCGCATCCTGCTAGGCTGTGAGCCAGGCCCAGCGGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGGCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTTAGCGGTTTGTACCGTgtaagtgtgatttggggagttagagtctgcacgggcaaaggcagttgact #### Cyp2c37_ID7840_3 --> 2 - 1 Original Alignment gcCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAA-CTTAGGAAAACCAATg ttcttttgtccctaagaggtgctctacatgccgttcttggtgttccccaggcCTTACATTTAGTAAAGGAAATGTATGGAGAAACACAAGGCGCTTCTCGCTCATGCCTTTGCGGAATTTAGGTATGGGGAAAAGGAGCATTAAGGACCGCATTCAAGAGGAAGCGCATTGCCTTGTTGAGGAACCTTAGGAAGACCAATtgtgagcctaggtttaaaactatagcactatcagtgattttgttcttatca Alignment from CESAR gcCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAA-CTTAGGAAAACCAATg ttcttttgtccctaagaggtgctctacatgccgttcttggtgttccccaggcCTTACATTTAGTAAAGGAAATGTATGGAGAAACACAAGGCGCTTCTCGCTCATGCCTTTGCGGAATTTAGGTATGGGGAAAAGGAGCATTAAGGACCGCATTCAAGAGGAAGCGCATTGCCTTGTTGAGGAACCTTAGGAAGACCAATtgtgagcctaggtttaaaactatagcactatcagtgattttgttcttatca Alignment from Spaln_aa2Genome GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAA-CTTAGGAAAACCAATG ttcttttgtccctaagaggtgctctacatgccgttcttggtgttccccagGCCTTACATTTAGTAAAGGAAATGTATGGAGAAACACAAGGCGCTTCTCGCTCATGCCTTTGCGGAATTTAGGTATGGGGAAAAGGAGCATTAAGGACCGCATTCAAGAGGAAGCGCATTGCCTTGTTGAGGAAcCTTAGGAAGACCAATTgtgagcctaggtttaaaactatagcactatcagtgattttgttcttatca Alignment from Spaln_nt2Genome GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAAC-TTAGGAAAACCAATG ttcttttgtccctaagaggtgctctacatgccgttcttggtgttccccagGCCTTACATTTAGTAAAGGAAATGTATGGAGAAACACAAGGCGCTTCTCGCTCATGCCTTTGCGGAATTTAGGTATGGGGAAAAGGAGCATTAAGGACCGCATTCAAGAGGAAGCGCATTGCCTTGTTGAGGAACCTTAGGAAGACCAATTgtgagcctaggtttaaaactatagcactatcagtgattttgttcttatca Alignment from Pairagon GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAA-CTTAGGAAAACCAATG ttcttttgtccctaagaggtgctctacatgccgttcttggtgttccccagGCCTTACATTTAGTAAAGGAAATGTATGGAGAAACACAAGGCGCTTCTCGCTCATGCCTTTGCGGAATTTAGGTATGGGGAAAAGGAGCATTAAGGACCGCATTCAAGAGGAAGCGCATTGCCTTGTTGAGGAACCTTAGGAAGACCAATTgtgagcctaggtttaaaactatagcactatcagtgattttgttcttatca Alignment from Exonerate_protein2genome GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAA-CTTAGGAAAACCAATG ttcttttgtccctaagaggtgctctacatgccgttcttggtgttccccagGCCTTACATTTAGTAAAGGAAATGTATGGAGAAACACAAGGCGCTTCTCGCTCATGCCTTTGCGGAATTTAGGTATGGGGAAAAGGAGCATTAAGGACCGCATTCAAGAGGAAGCGCATTGCCTTGTTGAGGAACCTTAGGAAGACCAATTgtgagcctaggtttaaaactatagcactatcagtgattttgttcttatca Alignment from Exonerate_coding2genome GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAA-CTTAGGAAAACCAATG ttcttttgtccctaagaggtgctctacatgccgttcttggtgttccccagGCCTTACATTTAGTAAAGGAAATGTATGGAGAAACACAAGGCGCTTCTCGCTCATGCCTTTGCGGAATTTAGGTATGGGGAAAAGGAGCATTAAGGACCGCATTCAAGAGGAAGCGCATTGCCTTGTTGAGGAACCTTAGGAAGACCAATTgtgagcctaggtttaaaactatagcactatcagtgattttgttcttatca Alignment from GeneWise GCCTTGCATTTAGTAAAGGAAATGTATGGAAAAACACGAGGCGTTTCTCACTCATGACGCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAA-CTTAGGAAAACCAATG ttcttttgtccctaagaggtgctctacatgccgttcttggtgttccccagGCCTTACATTTAGTAAAGGAAATGTATGGAGAAACACAAGGCGCTTCTCGCTCATGCCTTTGCGGAATTTAGGTATGGGGAAAAGGAGCATTAAGGACCGCATTCAAGAGGAAGCGCATTGCCTTGTTGAGGAACCTTAGGAAGACCAATTgtgagcctaggtttaaaactatagcactatcagtgattttgttcttatca #### Cyp2c50_ID7862_3 --> 2 - 1 Original Alignment gcATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGG-AATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg aaaagataggagagcccaattccgtctactgtctgtccctttgatttcaggaATTATATTCAGTAAGGGAAATGTGTGGAAAAACATAAGGCACTTCTCACTTACAACTCTGCGACAACTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTCTTCAAGAGGAAGCTCGTTGTCTTGTTGAGGAACTTCGGAAAACCAATggtaagtgcaggtgtagactcagaacttggtgtgatcttattcattttttt Alignment from CESAR gcATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGG-AATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg aaaagataggagagcccaattccgtctactgtctgtccctttgatttcaggaATTATATTCAGTAAGGGAAATGTGTGGAAAAACATAAGGCACTTCTCACTTACAACTCTGCGACAACTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTCTTCAAGAGGAAGCTCGTTGTCTTGTTGAGGAACTTCGGAAAACCAATggtaagtgcaggtgtagactcagaacttggtgtgatcttattcattttttt Alignment from Spaln_aa2Genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTA-GGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG aaaagataggagagcccaattccgtctactgtctgtccctttgatttcagGAATTATATTCAGTAAGGGAAATGTGTGGAAAAACATAAGGCACTTCTCACTTACAACTCTGCGACAACTTaGGCATGGGAAAAAGAAGCATTGAGGACCGTCTTCAAGAGGAAGCTCGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtaagtgcaggtgtagactcagaacttggtgtgatcttattcattttttt Alignment from Spaln_nt2Genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGG-AATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG aaaagataggagagcccaattccgtctactgtctgtccctttgatttcagGAATTATATTCAGTAAGGGAAATGTGTGGAAAAACATAAGGCACTTCTCACTTACAACTCTGCGACAACTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTCTTCAAGAGGAAGCTCGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtaagtgcaggtgtagactcagaacttggtgtgatcttattcattttttt Alignment from Pairagon GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGG-AATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG aaaagataggagagcccaattccgtctactgtctgtccctttgatttcagGAATTATATTCAGTAAGGGAAATGTGTGGAAAAACATAAGGCACTTCTCACTTACAACTCTGCGACAACTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTCTTCAAGAGGAAGCTCGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtaagtgcaggtgtagactcagaacttggtgtgatcttattcattttttt Alignment from Exonerate_protein2genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGG-AATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG aaaagataggagagcccaattccgtctactgtctgtccctttgatttcagGAATTATATTCAGTAAGGGAAATGTGTGGAAAAACATAAGGCACTTCTCACTTACAACTCTGCGACAACTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTCTTCAAGAGGAAGCTCGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtaagtgcaggtgtagactcagaacttggtgtgatcttattcattttttt Alignment from Exonerate_coding2genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGG-AATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG aaaagataggagagcccaattccgtctactgtctgtccctttgatttcagGAATTATATTCAGTAAGGGAAATGTGTGGAAAAACATAAGGCACTTCTCACTTACAACTCTGCGACAACTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTCTTCAAGAGGAAGCTCGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtaagtgcaggtgtagactcagaacttggtgtgatcttattcattttttt Alignment from GeneWise GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTG-CGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG aaaagataggagagcccaattccgtctactgtctgtccctttgatttcagGAATTATATTCAGTAAGGGAAATGTGTGGAAAAACATAAGGCACTTCTCACTTACAACTCTGCGACAACTTAGGCATGGGAAAAAGAAGCATTGAGGACCGTCTTCAAGAGGAAGCTCGTTGTCTTGTTGAGGAACTTCGGAAAACCAATGgtaagtgcaggtgtagactcagaacttggtgtgatcttattcattttttt #### Cyp2c54_ID7855_3 --> 2 - 1 Original Alignment gcATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAAT-TTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg ctgctgctactccaaggtttactctgtaaccagctcactctgttttacaggcATTGGATTTAGCAATGGAACTGTATGGAAAAACACAAGGCACTTCTCACTTATGACGCTGCGGAATCTTAGGCATGGGAAAAAGAAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATggtcagttacaggtatagaaggaaggtgaccagctaggtcttgcaaattct Alignment from CESAR gcATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAAT-TTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg ctgctgctactccaaggtttactctgtaaccagctcactctgttttacaggcATTGGATTTAGCAATGGAACTGTATGGAAAAACACAAGGCACTTCTCACTTATGACGCTGCGGAATCTTAGGCATGGGAAAAAGAAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATggtcagttacaggtatagaaggaaggtgaccagctaggtcttgcaaattct Alignment from Spaln_aa2Genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAATTTA-GGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggtttactctgtaaccagctcactctgttttacagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACAAGGCACTTCTCACTTATGACGCTGCGGAATCTTaGGCATGGGAAAAAGAAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtcagttacaggtatagaaggaaggtgaccagctaggtcttgcaaattct Alignment from Spaln_nt2Genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAAT-TTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggtttactctgtaaccagctcactctgttttacagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACAAGGCACTTCTCACTTATGACGCTGCGGAATCTTAGGCATGGGAAAAAGAAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtcagttacaggtatagaaggaaggtgaccagctaggtcttgcaaattct Alignment from Pairagon GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAAT-TTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggtttactctgtaaccagctcactctgttttacagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACAAGGCACTTCTCACTTATGACGCTGCGGAATCTTAGGCATGGGAAAAAGAAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtcagttacaggtatagaaggaaggtgaccagctaggtcttgcaaattct Alignment from Exonerate_protein2genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAAT-TTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggtttactctgtaaccagctcactctgttttacagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACAAGGCACTTCTCACTTATGACGCTGCGGAATCTTAGGCATGGGAAAAAGAAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtcagttacaggtatagaaggaaggtgaccagctaggtcttgcaaattct Alignment from Exonerate_coding2genome GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAAT-TTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggtttactctgtaaccagctcactctgttttacagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACAAGGCACTTCTCACTTATGACGCTGCGGAATCTTAGGCATGGGAAAAAGAAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtcagttacaggtatagaaggaaggtgaccagctaggtcttgcaaattct Alignment from GeneWise GCATTGGATTTAGTAATGGAAGTGTATGGAAAAACACGAGGCACTTCTCACTCATGACTCTGCGGAAT-TTAGGCATGGGAAAAAGGAGCATTGAGGACCGTGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG ctgctgctactccaaggtttactctgtaaccagctcactctgttttacagGCATTGGATTTAGCAATGGAACTGTATGGAAAAACACAAGGCACTTCTCACTTATGACGCTGCGGAATCTTAGGCATGGGAAAAAGAAGCATTGAGGACCGCGTTCAAGAGGAAGCACGTTGCCTTGTGGAAGAACTTAGAAAGACTAATGgtcagttacaggtatagaaggaaggtgaccagctaggtcttgcaaattct #### D19Ertd737e_ID13191_3 --> 2 - 2 Original Alignment gcAAATTGAAGAATGAA-AAGGAATCTCACag aaaacagaatattaaagtaacagcgtgtctgcctttgctgtcacctacaggcAAATTGAAAAATGAACAAGGAATCTCACaggtaggtatatgtgagaatagtttctattcagcagtgttttgttgaatgtt Alignment from CESAR gcAAATTGAAGAATGAA-AAGGAATCTCACag aaaacagaatattaaagtaacagcgtgtctgcctttgctgtcacctacaggcAAATTGAAAAATGAACAAGGAATCTCACaggtaggtatatgtgagaatagtttctattcagcagtgttttgttgaatgtt Alignment from Spaln_aa2Genome GCAAATTGAAGAATGAA-AAGGAATCTCACAG aaaacagaatattaaagtaacagcgtgtctgcctttgctgtcacctacagGCAAATTGAAAAATGAAcAAGGAATCTCACAGgtaggtatatgtgagaatagtttctattcagcagtgttttgttgaatgtt Alignment from Spaln_nt2Genome GCAAATTGAAGAATGAA-AAGGAATCTCACAG aaaacagaatattaaagtaacagcgtgtctgcctttgctgtcacctacagGCAAATTGAAAAATGAACAAGGAATCTCACAGgtaggtatatgtgagaatagtttctattcagcagtgttttgttgaatgtt Alignment from Pairagon GCAAATTGAAGAATGAA-AAGGAATCTCACAG aaaacagaatattaaagtaacagcgtgtctgcctttgctgtcacctacagGCAAATTGAAAAATGAACAAGGAATCTCACAGgtaggtatatgtgagaatagtttctattcagcagtgttttgttgaatgtt Alignment from Exonerate_protein2genome GCAAATTGAAGAATGAA-AAGGAATCTCACAG aaaacagaatattaaagtaacagcgtgtctgcctttgctgtcacctacagGCAAATTGAAAAATGAACAAGGAATCTCACAGgtaggtatatgtgagaatagtttctattcagcagtgttttgttgaatgtt Alignment from Exonerate_coding2genome aaaacagaatattaaagtaacagcgtgtctgcctttgctgtcacctacaggcaaattgaaaaatgaacaaggaatctcacaggtaggtatatgtgagaatagtttctattcagcagtgttttgttgaatgtt Alignment from GeneWise aaaacagaatattaaagtaacagcgtgtctgcctttgctgtcacctacaggcaaattgaaaaatgaacaaggaatctcacaggtaggtatatgtgagaatagtttctattcagcagtgttttgttgaatgtt #### Dagla_ID2758_12 --> 0 - 0 Original Alignment GGCATGGTACTCTCAGCTGAGTACATC-AAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG accttgcccttcccctgctagggctaccatcttatatttttaatcaacagGACATGGTACTGACAGCTGAGTACATACAAGAAGAAGCTGGAGCAGGAGATGGTCTTGTCCCAGGCTTTTGGGCGAGACCTGgtaccgtgtcaacaacattccatcctgaagaggtgggctggttgactgca Alignment from CESAR GGCATGGTACTCTCAGCTGAGTACATC-AAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG accttgcccttcccctgctagggctaccatcttatatttttaatcaacagGACATGGTACTGACAGCTGAGTACATACAAGAAGAAGCTGGAGCAGGAGATGGTCTTGTCCCAGGCTTTTGGGCGAGACCTGgtaccgtgtcaacaacattccatcctgaagaggtgggctggttgactgca Alignment from Spaln_aa2Genome GGCATGGTACTCTCAGCTGAGTACATC-AAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG accttgcccttcccctgctagggctaccatcttatatttttaatcaacagGACATGGTACTGACAGCTGAGTACATAcAAGAAGAAGCTGGAGCAGGAGATGGTCTTGTCCCAGGCTTTTGGGCGAGACCTGgtaccgtgtcaacaacattccatcctgaagaggtgggctggttgactgca Alignment from Spaln_nt2Genome GGCATGGTACTCTCAGCTGAGTACAT-CAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG accttgcccttcccctgctagggctaccatcttatatttttaatcaacagGACATGGTACTGACAGCTGAGTACATACAAGAAGAAGCTGGAGCAGGAGATGGTCTTGTCCCAGGCTTTTGGGCGAGACCTGgtaccgtgtcaacaacattccatcctgaagaggtgggctggttgactgca Alignment from Pairagon GGCATGGTACTCTCAGCTGAGTACAT-CAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG accttgcccttcccctgctagggctaccatcttatatttttaatcaacagGACATGGTACTGACAGCTGAGTACATACAAGAAGAAGCTGGAGCAGGAGATGGTCTTGTCCCAGGCTTTTGGGCGAGACCTGgtaccgtgtcaacaacattccatcctgaagaggtgggctggttgactgca Alignment from Exonerate_protein2genome GGCATGGTACTCTCAGCTGAGTACATC-AAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG accttgcccttcccctgctagggctaccatcttatatttttaatcaacagGACATGGTACTGACAGCTGAGTACATACAAGAAGAAGCTGGAGCAGGAGATGGTCTTGTCCCAGGCTTTTGGGCGAGACCTGgtaccgtgtcaacaacattccatcctgaagaggtgggctggttgactgca Alignment from Exonerate_coding2genome GGCATGGTACTCTCAGCTGAGTACATC-AAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG accttgcccttcccctgctagggctaccatcttatatttttaatcaacagGACATGGTACTGACAGCTGAGTACATACAAGAAGAAGCTGGAGCAGGAGATGGTCTTGTCCCAGGCTTTTGGGCGAGACCTGgtaccgtgtcaacaacattccatcctgaagaggtgggctggttgactgca Alignment from GeneWise GGCATGGTACTCTCAGCTGAGTAC-ATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTGTCCCAGGCCTTTGGGCGAGACCTG accttgcccttcccctgctagggctaccatcttatatttttaatcaacagGACATGGTACTGACAGCTGAGTACATACAAGAAGAAGCTGGAGCAGGAGATGGTCTTGTCCCAGGCTTTTGGGCGAGACCTGgtaccgtgtcaacaacattccatcctgaagaggtgggctggttgactgca #### Dak_ID2897_16 --> 0 - 0 Original Alignment CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTC-CTGACTAAAGCAGTCAAG ttgggccttcctaagtgccagggtctggtaatgaatgtttgtctttatagCTGGACTCTCTGTGGTCAGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGGCCAGCCTTCTTCCAGTCCCTTACTAAAGCAGTCAAGgtgagggcattcagctgtacaatcaagtacccaaagctcccatctctgga Alignment from CESAR CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTC-CTGACTAAAGCAGTCAAG ttgggccttcctaagtgccagggtctggtaatgaatgtttgtctttatagCTGGACTCTCTGTGGTCAGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGGCCAGCCTTCTTCCAGTCCCTTACTAAAGCAGTCAAGgtgagggcattcagctgtacaatcaagtacccaaagctcccatctctgga Alignment from Spaln_aa2Genome CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTC-CTGACTAAAGCAGTCAAG ttgggccttcctaagtgccagggtctggtaatgaatgtttgtctttatagCTGGACTCTCTGTGGTCAGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGGCCAGCCTTCTTCCAGTCcCTTACTAAAGCAGTCAAGgtgagggcattcagctgtacaatcaagtacccaaagctcccatctctgga Alignment from Spaln_nt2Genome CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTCC-TGACTAAAGCAGTCAAG ttgggccttcctaagtgccagggtctggtaatgaatgtttgtctttatagCTGGACTCTCTGTGGTCAGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGGCCAGCCTTCTTCCAGTCCCTTACTAAAGCAGTCAAGgtgagggcattcagctgtacaatcaagtacccaaagctcccatctctgga Alignment from Pairagon CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGT-CCTGACTAAAGCAGTCAAG ttgggccttcctaagtgccagggtctggtaatgaatgtttgtctttatagCTGGACTCTCTGTGGTCAGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGGCCAGCCTTCTTCCAGTCCCTTACTAAAGCAGTCAAGgtgagggcattcagctgtacaatcaagtacccaaagctcccatctctgga Alignment from Exonerate_protein2genome CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTC-CTGACTAAAGCAGTCAAG ttgggccttcctaagtgccagggtctggtaatgaatgtttgtctttatagCTGGACTCTCTGTGGTCAGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGGCCAGCCTTCTTCCAGTCCCTTACTAAAGCAGTCAAGgtgagggcattcagctgtacaatcaagtacccaaagctcccatctctgga Alignment from Exonerate_coding2genome CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCAGTC-CTGACTAAAGCAGTCAAG ttgggccttcctaagtgccagggtctggtaatgaatgtttgtctttatagCTGGACTCTCTGTGGTCAGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGGCCAGCCTTCTTCCAGTCCCTTACTAAAGCAGTCAAGgtgagggcattcagctgtacaatcaagtacccaaagctcccatctctgga Alignment from GeneWise CTGGATTCTCTGTGGGCAGCAGCACAGGAGTTCCAAGCCTGGAAGAGCCCAGGGGCCAGTCTCCTCCCA-GTCCTGACTAAAGCAGTCAAG ttgggccttcctaagtgccagggtctggtaatgaatgtttgtctttatagCTGGACTCTCTGTGGTCAGCAGCACAGGAGTTCCAAGCCTGGAAAAGCCCAGGGGCCAGCCTTCTTCCAGTCCCTTACTAAAGCAGTCAAGgtgagggcattcagctgtacaatcaagtacccaaagctcccatctctgga #### Dak_ID2898_15 --> 1 - 0 Original Alignment gTATGGAAAGGCT-GCACCAGGAGACAGGACAATG acttggcacccgtgtcaacatctaaagaccttgtgtcttttttattaaaggTATGGAAAGGCTCGCACCAGGAGACAGGACAATGgtgagctccccttccccctttgggccttcctaagtgccagggtctggtat Alignment from CESAR gTATGGAAAGGCT-GCACCAGGAGACAGGACAATG acttggcacccgtgtcaacatctaaagaccttgtgtcttttttattaaaggTATGGAAAGGCTCGCACCAGGAGACAGGACAATGgtgagctccccttccccctttgggccttcctaagtgccagggtctggtaa Alignment from Spaln_aa2Genome GTATGGAAAGGCT-GCACCAGGAGACAGGACAATG acttggcacccgtgtcaacatctaaagaccttgtgtcttttttattaaagGTATGGAAAGGCTcGCACCAGGAGACAGGACAATGgtgagctccccttccccctttgggccttcctaagtgccagggtctggtat Alignment from Spaln_nt2Genome GTATGGAAAGGCT-GCACCAGGAGACAGGACAATG acttggcacccgtgtcaacatctaaagaccttgtgtcttttttattaaagGTATGGAAAGGCTCGCACCAGGAGACAGGACAATGgtgagctccccttccccctttgggccttcctaagtgccagggtctggtat Alignment from Pairagon GTATGGAAAGGCT-GCACCAGGAGACAGGACAATG acttggcacccgtgtcaacatctaaagaccttgtgtcttttttattaaagGTATGGAAAGGCTCGCACCAGGAGACAGGACAATGgtgagctccccttccccctttgggccttcctaagtgccagggtctggtat Alignment from Exonerate_protein2genome GTATGGAAAGGCT-GCACCAGGAGACAGGACAATG acttggcacccgtgtcaacatctaaagaccttgtgtcttttttattaaagGTATGGAAAGGCTCGCACCAGGAGACAGGACAATGgtgagctccccttccccctttgggccttcctaagtgccagggtctggtat Alignment from Exonerate_coding2genome GTATGGAAAGGCTGC acttggcacccgtgtcaacatctaaagaccttgtgtcttttttattaaaggtatggaaaggctcgcaccaggagacaggacaatggtgagctccccttccccctttgggccttcctaagtGCCAGGGTCTGGTAT Alignment from GeneWise GTATGGAAAGGCTGCACCAGGAGACAGGACAATG acttggcacccgtgtcaacatctaaagaccttgtgtcttttttattaaaggtatggaaagGCTC---------GCACCAGGAGACAGGACAATGgtgagctccccttccccctttgggccttcctaagtgccagggtctggtat #### Dak_ID2900_13 --> 2 - 0 Original Alignment ccATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTC-TCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG taaagtggcttgtagctcagataacccatcacagccttgttttcttccagccATCCAGGGGTGGCTGAAGGAAGGCCCATCTCTAACCAGCCCCACCCAGGTACTCCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtacctaggagcagttcttaggggacaacttgatggggagggttgcaagc Alignment from CESAR ccATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTC-TCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG taaagtggcttgtagctcagataacccatcacagccttgttttcttccagccATCCAGGGGTGGCTGAAGGAAGGCCCATCTCTAACCAGCCCCACCCAGGTACTCCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtacctaggagcagttcttaggggacaacttgatggggagggttgcaagc Alignment from Spaln_aa2Genome CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTC-TCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG taaagtggcttgtagctcagataacccatcacagccttgttttcttccagCCATCCAGGGGTGGCTGAAGGAAGGCCCATCTCTAACCAGCCCCACCCAGGTACTCcTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtacctaggagcagttcttaggggacaacttgatggggagggttgcaagc Alignment from Spaln_nt2Genome CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACT-CTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG taaagtggcttgtagctcagataacccatcacagccttgttttcttccagCCATCCAGGGGTGGCTGAAGGAAGGCCCATCTCTAACCAGCCCCACCCAGGTACTCCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtacctaggagcagttcttaggggacaacttgatggggagggttgcaagc Alignment from Pairagon CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACT-CTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG taaagtggcttgtagctcagataacccatcacagccttgttttcttccagCCATCCAGGGGTGGCTGAAGGAAGGCCCATCTCTAACCAGCCCCACCCAGGTACTCCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtacctaggagcagttcttaggggacaacttgatggggagggttgcaagc Alignment from Exonerate_protein2genome CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTC-TCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG taaagtggcttgtagctcagataacccatcacagccttgttttcttccagCCATCCAGGGGTGGCTGAAGGAAGGCCCATCTCTAACCAGCCCCACCCAGGTACTCCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtacctaggagcagttcttaggggacaacttgatggggagggttgcaagc Alignment from Exonerate_coding2genome CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTC-TCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG taaagtggcttgtagctcagataacccatcacagccttgttttcttccagCCATCCAGGGGTGGCTGAAGGAAGGCCCATCTCTAACCAGCCCCACCCAGGTACTCCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtacctaggagcagttcttaggggacaacttgatggggagggttgcaagc Alignment from GeneWise CCATTCAGGGCTGGCTAAAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTC-TCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG taaagtggcttgtagctcagataacccatcacagccttgttttcttccagCCATCCAGGGGTGGCTGAAGGAAGGCCCATCTCTAACCAGCCCCACCCAGGTACTCCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtacctaggagcagttcttaggggacaacttgatggggagggttgcaagc #### Ddb1_ID2929_14 --> 1 - 1 Original Alignment cCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATT-GGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAg gtgtagcattcattcctgctatatatgttctgctgctcctattctaacagcCACACAGAGATGGAACATGAAGTGGCATGCTTGGATACCACCCCATTAGGGGACAGCAATGGCCTCTCCCCGCTTTGTGCCATTCGGACTTTGGACAGATATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAggtaatcctactagtacttcaggttaaagccccagtaaggcctcatctctc Alignment from CESAR cCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATT-GGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAg gtgtagcattcattcctgctatatatgttctgctgctcctattctaacagcCACACAGAGATGGAACATGAAGTGGCATGCTTGGATACCACCCCATTAGGGGACAGCAATGGCCTCTCCCCGCTTTGTGCCATTCGGACTTTGGACAGATATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAggtaatcctactagtacttcaggttaaagccccagtaagggtgttgtttgc Alignment from Spaln_aa2Genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATT-GGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG gtgtagcattcattcctgctatatatgttctgctgctcctattctaacagCCACACAGAGATGGAACATGAAGTGGCATGCTTGGATACCACCCCATTAGGGGACAGCAATGGCCTCTCCCCGCTTTGTGCCATTcGGACTTTGGACAGATATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAGgtaatcctactagtacttcaggttaaagccccagtaaggcctcatctctc Alignment from Spaln_nt2Genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATT-GGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG gtgtagcattcattcctgctatatatgttctgctgctcctattctaacagCCACACAGAGATGGAACATGAAGTGGCATGCTTGGATACCACCCCATTAGGGGACAGCAATGGCCTCTCCCCGCTTTGTGCCATTCGGACTTTGGACAGATATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAGgtaatcctactagtacttcaggttaaagccccagtaaggcctcatctctc Alignment from Pairagon CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATT-GGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG gtgtagcattcattcctgctatatatgttctgctgctcctattctaacagCCACACAGAGATGGAACATGAAGTGGCATGCTTGGATACCACCCCATTAGGGGACAGCAATGGCCTCTCCCCGCTTTGTGCCATTCGGACTTTGGACAGATATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAGgtaatcctactagtacttcaggttaaagccccagtaaggcctcatctctc Alignment from Exonerate_protein2genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATT-GGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG gtgtagcattcattcctgctatatatgttctgctgctcctattctaacagCCACACAGAGATGGAACATGAAGTGGCATGCTTGGATACCACCCCATTAGGGGACAGCAATGGCCTCTCCCCGCTTTGTGCCATTCGGACTTTGGACAGATATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAGgtaatcctactagtacttcaggttaaagccccagtaaggcctcatctctc Alignment from Exonerate_coding2genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATT-GGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG gtgtagcattcattcctgctatatatgttctgctgctcctattctaacagCCACACAGAGATGGAACATGAAGTGGCATGCTTGGATACCACCCCATTAGGGGACAGCAATGGCCTCTCCCCGCTTTGTGCCATTCGGACTTTGGACAGATATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAGgtaatcctactagtacttcaggttaaagccccagtaaggcctcatctctc Alignment from GeneWise CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCC-ATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG gtgtagcattcattcctgctatatatgttctgctgctcctattctaacagCCACACAGAGATGGAACATGAAGTGGCATGCTTGGATACCACCCCATTAGGGGACAGCAATGGCCTCTCCCCGCTTTGTGCCATTCGGACTTTGGACAGATATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAGgtaatcctactagtacttcaggttaaagccccagtaaggcctcatctctc #### Ddb1_ID2930_15 --> 2 - 1 Original Alignment agATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTC-TACTTTGGGCTCAACATCGAGACAg agtacttcaggttaaagccccagtaagggtgttgtttgccatgtccatagagATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCCTACTTCGGGCTCAATATCGAGACAggtatgtcaaaacattgagtgtgggttttttcagaaataaggagccttgga Alignment from CESAR agATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTC-TACTTTGGGCTCAACATCGAGACAg agtacttcaggttaaagccccagtaagggtgttgtttgccatgtccatagagATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCCTACTTCGGGCTCAATATCGAGACAggtatgtcaaaacattgagtgtgggttttttcagaaataaggagccttgga Alignment from Spaln_aa2Genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTC-TACTTTGGGCTCAACATCGAGACAG agtacttcaggttaaagccccagtaagggtgttgtttgccatgtccatagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCcTACTTCGGGCTCAATATCGAGACAGgtatgtcaaaacattgagtgtgggttttttcagaaataaggagccttgga Alignment from Spaln_nt2Genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTT-CTACTTTGGGCTCAACATCGAGACAG agtacttcaggttaaagccccagtaagggtgttgtttgccatgtccatagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCCTACTTCGGGCTCAATATCGAGACAGgtatgtcaaaacattgagtgtgggttttttcagaaataaggagccttgga Alignment from Pairagon AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTT-CTACTTTGGGCTCAACATCGAGACAG agtacttcaggttaaagccccagtaagggtgttgtttgccatgtccatagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCCTACTTCGGGCTCAATATCGAGACAGgtatgtcaaaacattgagtgtgggttttttcagaaataaggagccttgga Alignment from Exonerate_protein2genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTC-TACTTTGGGCTCAACATCGAGACAG agtacttcaggttaaagccccagtaagggtgttgtttgccatgtccatagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCCTACTTCGGGCTCAATATCGAGACAGgtatgtcaaaacattgagtgtgggttttttcagaaataaggagccttgga Alignment from Exonerate_coding2genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTC-TACTTTGGGCTCAACATCGAGACAG agtacttcaggttaaagccccagtaagggtgttgtttgccatgtccatagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCCTACTTCGGGCTCAATATCGAGACAGgtatgtcaaaacattgagtgtgggttttttcagaaataaggagccttgga Alignment from GeneWise AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTT-TTCTACTTTGGGCTCAACATCGAGACAG agtacttcaggttaaagccccagtaagggtgttgtttgccatgtccatagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCCTACTTCGGGCTCAATATCGAGACAGgtatgtcaaaacattgagtgtgggttttttcagaaataaggagccttgga #### Ddb1_ID2932_17 --> 1 - 2 Original Alignment tCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAGCTC-CATATTCGCACAGTTCCCCTCTATGAGTCTCCCag tgctttagaaacaaaaggaccctagcatggctgtttctcatttcctacagtCTGGCATTGGCCAATAACAGTACTCTCACAATTGGTACCATTGATGAAATGCAGAAGCTCCCACATTCGCACGGTTCCCCTCTATGAGTCTCCTaggtaagcctagacctgagaagcagaagagggagatggttagtgatgggtca Alignment from CESAR tCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAGCTC-CATATTCGCACAGTTCCCCTCTATGAGTCTCCCag tgctttagaaacaaaaggaccctagcatggctgtttctcatttcctacagtCTGGCATTGGCCAATAACAGTACTCTCACAATTGGTACCATTGATGAAATGCAGAAGCTCCCACATTCGCACGGTTCCCCTCTATGAGTCTCCTaggtaagcctagacctgagaagcagaagagggagatggttagtgatgggtca Alignment from Spaln_aa2Genome TCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAGCTC-CATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tgctttagaaacaaaaggaccctagcatggctgtttctcatttcctacagTCTGGCATTGGCCAATAACAGTACTCTCACAATTGGTACCATTGATGAAATGCAGAAGCTCcCACATTCGCACGGTTCCCCTCTATGAGTCTCCTAGgtaagcctagacctgagaagcagaagagggagatggttagtgatgggtca Alignment from Spaln_nt2Genome TCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAGCTCC-ATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tgctttagaaacaaaaggaccctagcatggctgtttctcatttcctacagTCTGGCATTGGCCAATAACAGTACTCTCACAATTGGTACCATTGATGAAATGCAGAAGCTCCCACATTCGCACGGTTCCCCTCTATGAGTCTCCTAGgtaagcctagacctgagaagcagaagagggagatggttagtgatgggtca Alignment from Pairagon TCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAGCT-CCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tgctttagaaacaaaaggaccctagcatggctgtttctcatttcctacagTCTGGCATTGGCCAATAACAGTACTCTCACAATTGGTACCATTGATGAAATGCAGAAGCTCCCACATTCGCACGGTTCCCCTCTATGAGTCTCCTAGgtaagcctagacctgagaagcagaagagggagatggttagtgatgggtca Alignment from Exonerate_protein2genome TCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAGCTC-CATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tgctttagaaacaaaaggaccctagcatggctgtttctcatttcctacagTCTGGCATTGGCCAATAACAGTACTCTCACAATTGGTACCATTGATGAAATGCAGAAGCTCCCACATTCGCACGGTTCCCCTCTATGAGTCTCCTAGgtaagcctagacctgagaagcagaagagggagatggttagtgatgggtca Alignment from Exonerate_coding2genome TCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAGCTC-CATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tgctttagaaacaaaaggaccctagcatggctgtttctcatttcctacagTCTGGCATTGGCCAATAACAGTACTCTCACAATTGGTACCATTGATGAAATGCAGAAGCTCCCACATTCGCACGGTTCCCCTCTATGAGTCTCCTAGgtaagcctagacctgagaagcagaagagggagatggttagtgatgggtca Alignment from GeneWise TCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAG-CTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tgctttagaaacaaaaggaccctagcatggctgtttctcatttcctacagTCTGGCATTGGCCAATAACAGTACTCTCACAATTGGTACCATTGATGAAATGCAGAAGCTCCCACATTCGCACGGTTCCCCTCTATGAGTCTCCTAGgtaagcctagacctgagaagcagaagagggagatggttagtgatgggtca #### Ddb1_ID2939_24 --> 1 - 1 Original Alignment tGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTC-TTTGGCACAGTCAACGGCATGATAg agggcctcttagggagaagggttctggaagccattattctttccttacagtGCTGCAACCACTGATGAGGAGCGGCAGCATTTACAGGAGATAGGTCTCTTCCACCTGGGTGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGTGAGGCTTCCACTCCCACAACACAGGGATCAGTGCTTCTTTGGCACAGTCAATATCATGATAggtgagtgttgttcttggtgagcacacctggctccagctctcatgccaggc Alignment from CESAR tGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCT---ACACAGGGCTCGGTGCTC-TTTGGCACAGTCAACGGCATGATAg agggcctcttagggagaagggttctggaagccattattctttccttacagtGCTGCAACCACTGATGAGGAGCGGCAGCATTTACAGGAGATAGGTCTCTTCCACCTGGGTGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGTGAGGCTTCCACTCCCACAACACAGGGATCAGTGCTTCTTTGGCACAGTCAATATCATGATAggtgagtgttgttcttggtgagcacacctggctccagctctcatgccaggc Alignment from Spaln_aa2Genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCT---ACACAGGGCTCGGTGCTC-TTTGGCACAGTCAACGGCATGATAG agggcctcttagggagaagggttctggaagccattattctttccttacagTGCTGCAACCACTGATGAGGAGCGGCAGCATTTACAGGAGATAGGTCTCTTCCACCTGGGTGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGTGAGGCTTCCACTCCCACAACACAGGGATCAGTGCTTcTTTGGCACAGTCAATATCATGATAGgtgagtgttgttcttggtgagcacacctggctccagctctcatgccaggc Alignment from Spaln_nt2Genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCT-CTTTGGCACAGTCAACGGCATGATAG agggcctcttagggagaagggttctggaagccattattctttccttacagTGCTGCAACCACTGATGAGGAGCGGCAGCATTTACAGGAGATAGGTCTCTTCCACCTGGGTGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGTGAGGCTTCCACTCCCACAACACAGGGATCAGTGCTTCTTTGGCACAGTCAATATCATGATAGgtgagtgttgttcttggtgagcacacctggctccagctctcatgccaggc Alignment from Pairagon TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCT---ACACAGGGCTCGGTGC-TCTTTGGCACAGTCAACGGCATGATAG agggcctcttagggagaagggttctggaagccattattctttccttacagTGCTGCAACCACTGATGAGGAGCGGCAGCATTTACAGGAGATAGGTCTCTTCCACCTGGGTGAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGTGAGGCTTCCACTCCCACAACACAGGGATCAGTGCTTCTTTGGCACAGTCAATATCATGATAGgtgagtgttgttcttggtgagcacacctggctccagctctcatgccaggc Alignment from Exonerate_protein2genome agggcctcttagggagaagggttctggaagccattattctttccttacagtgctgcaaccactgatgaggagcggcagcatttacaggagataggtctcttccacctgggtgagtttgtcaatgtgttctgccatggctccctagttatgcagaatctgggtgaggcttccactcccacaacacagggatcagtgcttctttggcacagtcaatatcatgataggtgagtgttgttcttggtgagcacacctggctccagctctcatgccaggc Alignment from Exonerate_coding2genome agggcctcttagggagaagggttctggaagccattattctttccttacagtgctgcaaccactgatgaggagcggcagcatttacaggagataggtctcttccacctgggtgagtttgtcaatgtgttctgccatggctccctagttatgcagaatctgggtgaggcttccactcccacaacacagggatcagtgcttctttggcacagtcaatatcatgataggtgagtgttgttcttggtgagcacacctggctccagctctcatgccaggc Alignment from GeneWise agggcctcttagggagaagggttctggaagccattattctttccttacagtgctgcaaccactgatgaggagcggcagcatttacaggagataggtctcttccacctgggtgagtttgtcaatgtgttctgccatggctccctagttatgcagaatctgggtgaggcttccactcccacaacacagggatcagtgcttctttggcacagtcaatatcatgataggtgagtgttgttcttggtgagcacacctggctccagctctcatgccaggc #### Dock8_ID5413_32 --> 0 - 1 Original Alignment GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAG-CTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAg gtttgctgagtcctactaaactaaatgtgctttctgtttgcctcatccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAggtgagcgtacattccagaattatatccccaagtcattcaaggtgctactg Alignment from CESAR GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAG-CTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAg gtttgctgagtcctactaaactaaatgtgctttctgtttgcctcatccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAggtgagcgtacattccagaattatatccccaagtcattcaaggtgctactg Alignment from Spaln_aa2Genome GGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAG-CTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCA gtttgctgagtcctactaaactaaatgtgctttctgtttgcctcatccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGcCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAGgtgagcgtacattccagaattatatccccaagtcattcaaggtgctactg Alignment from Spaln_nt2Genome GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAG-CTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagtcctactaaactaaatgtgctttctgtttgcctcatccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAGgtgagcgtacattccagaattatatccccaagtcattcaaggtgctactg Alignment from Pairagon GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAG-CTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagtcctactaaactaaatgtgctttctgtttgcctcatccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAGgtgagcgtacattccagaattatatccccaagtcattcaaggtgctactg Alignment from Exonerate_protein2genome GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAG-CTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagtcctactaaactaaatgtgctttctgtttgcctcatccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAGgtgagcgtacattccagaattatatccccaagtcattcaaggtgctactg Alignment from Exonerate_coding2genome GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAG-CTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagtcctactaaactaaatgtgctttctgtttgcctcatccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAGgtgagcgtacattccagaattatatccccaagtcattcaaggtgctactg Alignment from GeneWise GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAG-CTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagtcctactaaactaaatgtgctttctgtttgcctcatccagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCCTGGAAGAGGCCCTGCTCCGTGGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAGgtgagcgtacattccagaattatatccccaagtcattcaaggtgctactg #### Dpf2_ID1304_9 --> 2 - 0 Original Alignment ggCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAA-TGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT ttgcccactctgcaccctggtttccaactaatcagtactgtgttttacagggCCTCCATCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCTGTGAAGACCTACCGCTGGCAGTGTATCGAACTGCAAGTGCTGCAACCTCTGTGGCACATCAGAAAATGATgtatgagtcactgagcctgctaggcccaatgagcctgccaggcttcaata Alignment from CESAR ggCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAA-TGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT ttgcccactctgcaccctggtttccaactaatcagtactgtgttttacagggCCTCCATCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCTGTGAAGACCTACCGCTGGCAGTGTATCGAACTGCAAGTGCTGCAACCTCTGTGGCACATCAGAAAATGATgtatgagtcactgagcctgctaggcccaatgagcctgccaggcttcaata Alignment from Spaln_aa2Genome GGCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAA-TGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT ttgcccactctgcaccctggtttccaactaatcagtactgtgttttacagGGCCTCCATCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCTGTGAAGACCTACCGCTGGCAGTGTATCGAAcTGCAAGTGCTGCAACCTCTGTGGCACATCAGAAAATGATgtatgagtcactgagcctgctaggcccaatgagcctgccaggcttcaata Alignment from Spaln_nt2Genome GGCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAA-TGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT ttgcccactctgcaccctggtttccaactaatcagtactgtgttttacagGGCCTCCATCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCTGTGAAGACCTACCGCTGGCAGTGTATCGAACTGCAAGTGCTGCAACCTCTGTGGCACATCAGAAAATGATgtatgagtcactgagcctgctaggcccaatgagcctgccaggcttcaata Alignment from Pairagon GGCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAA-TGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT ttgcccactctgcaccctggtttccaactaatcagtactgtgttttacagGGCCTCCATCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCTGTGAAGACCTACCGCTGGCAGTGTATCGAACTGCAAGTGCTGCAACCTCTGTGGCACATCAGAAAATGATgtatgagtcactgagcctgctaggcccaatgagcctgccaggcttcaata Alignment from Exonerate_protein2genome GGCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAA-TGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT ttgcccactctgcaccctggtttccaactaatcagtactgtgttttacagGGCCTCCATCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCTGTGAAGACCTACCGCTGGCAGTGTATCGAACTGCAAGTGCTGCAACCTCTGTGGCACATCAGAAAATGATgtatgagtcactgagcctgctaggcccaatgagcctgccaggcttcaata Alignment from Exonerate_coding2genome GGCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATCGAA-TGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT ttgcccactctgcaccctggtttccaactaatcagtactgtgttttacagGGCCTCCATCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCTGTGAAGACCTACCGCTGGCAGTGTATCGAACTGCAAGTGCTGCAACCTCTGTGGCACATCAGAAAATGATgtatgagtcactgagcctgctaggcccaatgagcctgccaggcttcaata Alignment from GeneWise GGCATCCGTCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCCGTGAAGACCTACCGCTGGCAGTGCATC-GAATGCAAGTGCTGCAACCTCTGCGGCACGTCGGAGAACGAT ttgcccactctgcaccctggtttccaactaatcagtactgtgttttacagGGCCTCCATCCTGCCTGCAGTTCACCCCTGTGATGATGGCGGCTGTGAAGACCTACCGCTGGCAGTGTATCGAACTGCAAGTGCTGCAACCTCTGTGGCACATCAGAAAATGATgtatgagtcactgagcctgctaggcccaatgagcctgccaggcttcaata #### Dpf2_ID1309_5 --> 0 - 0 Original Alignment CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACG-CCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTGAG catttggctgtgtttgagctttacttgttcctcccactcatccatcacagCGAATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACACCCAAAGCGTCGGGGGAAGGGCAAGTCCAAGgtaaaagcctcatcgactttctgtctctacctgcagAGTAAGGGTGTGAG Alignment from CESAR CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACG-CCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTGAG catttggctgtgtttgagctttacttgttcctcccactcatccatcacagCGAATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACACCCAAAGCGTCGGGGGAAGGGCAAGTCCAAGgtaaaagcctcatcgcaatgccttgtgttgtttcagAGTAAGGGTGTGAG Alignment from Spaln_aa2Genome CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAG-CGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTGAG catttggctgtgtttgagctttacttgttcctcccactcatccatcacagCGAATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACACCCAAAgCGTCGGGGGAAGGGCAAGTCCAAGgtaaaagcctcatcgactttctgtctctacctgcagAGTAAGGGTGTGAG Alignment from Spaln_nt2Genome CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCC-AAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTGAG catttggctgtgtttgagctttacttgttcctcccactcatccatcacagCGAATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACACCCAAAGCGTCGGGGGAAGGGCAAGTCCAAGgtaaaagcctcatcgactttctgtctctacctgcagAGTAAGGGTGTGAG Alignment from Pairagon CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACG-CCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTGAG catttggctgtgtttgagctttacttgttcctcccactcatccatcacagCGAATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACACCCAAAGCGTCGGGGGAAGGGCAAGTCCAAGgtaaaagcctcatcgactttctgtctctacctgcagAGTAAGGGTGTGAG Alignment from Exonerate_protein2genome CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACG-CCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTGAG catttggctgtgtttgagctttacttgttcctcccactcatccatcacagCGAATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACACCCAAAGCGTCGGGGGAAGGGCAAGTCCAAGgtaaaagcctcatcgactttctgtctctacctgcagAGTAAGGGTGTGAG Alignment from Exonerate_coding2genome CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACG-CCAAAGCGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTGAG catttggctgtgtttgagctttacttgttcctcccactcatccatcacagCGAATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACACCCAAAGCGTCGGGGGAAGGGCAAGTCCAAGgtaaaagcctcatcgactttctgtctctacctgcagAGTAAGGGTGTGAG Alignment from GeneWise CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCA-AAGCGTCGGGGGAAGGGGAAGTCCAAG------------------------------------AGTAAGGGTGTGAG catttggctgtgtttgagctttacttgttcctcccactcatccatcacagCGAATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACACCCAAAGCGTCGGGGGAAGGGCAAGTCCAAGGTAAAAGCCTCATCGACTTTCTGTCTCTACCTGCAGAGTAAGGGTGTGAG #### Dpp3_ID740_13 --> 0 - 2 Original Alignment ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGC-CTCTACCTCTGTCTCAACCCCCAAGTGCTGga tgagggacacagccaagccctgatttttttgtgcttcgtttctctttcagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATAGCGAATTCAGCACCATTGCCTCTAGGTATGAAGAGTGTCGGGCTGAGAGTGTGGGCCCTCTACCTCTGTCTCACCCCCCAAGTGTTGgagtaagtaaccattagccaaagggacggtgggctgacatcccacactaaac Alignment from CESAR ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGC-CTCTACCTCTGTCTCAACCCCCAAGTGCTGga tgagggacacagccaagccctgatttttttgtgcttcgtttctctttcagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATAGCGAATTCAGCACCATTGCCTCTAGGTATGAAGAGTGTCGGGCTGAGAGTGTGGGCCCTCTACCTCTGTCTCACCCCCCAAGTGTTGgagtaagtaaccattagccaaagggacggtgggctgacatcccacactaaac Alignment from Spaln_aa2Genome ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGC-CTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tgagggacacagccaagccctgatttttttgtgcttcgtttctctttcagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATAGCGAATTCAGCACCATTGCCTCTAGGTATGAAGAGTGTCGGGCTGAGAGTGTGGGCcCTCTACCTCTGTCTCACCCCCCAAGTGTTGGAgtaagtaaccattagccaaagggacggtgggctgacatcccacactaaac Alignment from Spaln_nt2Genome ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGC-CTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tgagggacacagccaagccctgatttttttgtgcttcgtttctctttcagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATAGCGAATTCAGCACCATTGCCTCTAGGTATGAAGAGTGTCGGGCTGAGAGTGTGGGCCCTCTACCTCTGTCTCACCCCCCAAGTGTTGGAgtaagtaaccattagccaaagggacggtgggctgacatcccacactaaac Alignment from Pairagon ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGG-CCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tgagggacacagccaagccctgatttttttgtgcttcgtttctctttcagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATAGCGAATTCAGCACCATTGCCTCTAGGTATGAAGAGTGTCGGGCTGAGAGTGTGGGCCCTCTACCTCTGTCTCACCCCCCAAGTGTTGGAgtaagtaaccattagccaaagggacggtgggctgacatcccacactaaac Alignment from Exonerate_protein2genome ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGC-CTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tgagggacacagccaagccctgatttttttgtgcttcgtttctctttcagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATAGCGAATTCAGCACCATTGCCTCTAGGTATGAAGAGTGTCGGGCTGAGAGTGTGGGCCCTCTACCTCTGTCTCACCCCCCAAGTGTTGGAgtaagtaaccattagccaaagggacggtgggctgacatcccacactaaac Alignment from Exonerate_coding2genome ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGC-CTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tgagggacacagccaagccctgatttttttgtgcttcgtttctctttcagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATAGCGAATTCAGCACCATTGCCTCTAGGTATGAAGAGTGTCGGGCTGAGAGTGTGGGCCCTCTACCTCTGTCTCACCCCCCAAGTGTTGGAgtaagtaaccattagccaaagggacggtgggctgacatcccacactaaac Alignment from GeneWise ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGC-CTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tgagggacacagccaagccctgatttttttgtgcttcgtttctctttcagATCCAGAGCTGGTACCGGAGTGGAGAGACTTGGGATAGCGAATTCAGCACCATTGCCTCTAGGTATGAAGAGTGTCGGGCTGAGAGTGTGGGCCCTCTACCTCTGTCTCACCCCCCAAGTGTTGGAgtaagtaaccattagccaaagggacggtgggctgacatcccacactaaac #### Dpp3_ID741_12 --> 0 - 0 Original Alignment GATGAGAAAGGTGCTTTCAACTTTGACAAG-GAGACTGTGATCAACCCAGAGACTGGGGAACAG agcagtagttgcctctggtaagcatggatgaactcattccatttttccagGATGAGAAAGGTGCTTTCAACTTTGACAAGCGAAACGGTGATCAACCCAGAGACTGGGGAGCAGgtgggtaattcactatggggtgaggtaattggaatgagggacacagccaa Alignment from CESAR GATGAGAAAGGTGCTTTCAACTTTGACAAG-GAGACTGTGATCAACCCAGAGACTGGGGAACAG agcagtagttgcctctggtaagcatggatgaactcattccatttttccagGATGAGAAAGGTGCTTTCAACTTTGACAAGCGAAACGGTGATCAACCCAGAGACTGGGGAGCAGgtgggtaattcactatggggtgaggtaattggaatgagggacacagccaa Alignment from Spaln_aa2Genome GATGAGAAAGGTGCTTTCAACTTTGACAAG-GAGACTGTGATCAACCCAGAGACTGGGGAACAG agcagtagttgcctctggtaagcatggatgaactcattccatttttccagGATGAGAAAGGTGCTTTCAACTTTGACAAGcGAAACGGTGATCAACCCAGAGACTGGGGAGCAGgtgggtaattcactatggggtgaggtaattggaatgagggacacagccaa Alignment from Spaln_nt2Genome GATGAGAAAGGTGCTTTCAACTTTGACAAG-GAGACTGTGATCAACCCAGAGACTGGGGAACAG agcagtagttgcctctggtaagcatggatgaactcattccatttttccagGATGAGAAAGGTGCTTTCAACTTTGACAAGCGAAACGGTGATCAACCCAGAGACTGGGGAGCAGgtgggtaattcactatggggtgaggtaattggaatgagggacacagccaa Alignment from Pairagon GATGAGAAAGGTGCTTTCAACTTTGACAAG-GAGACTGTGATCAACCCAGAGACTGGGGAACAG agcagtagttgcctctggtaagcatggatgaactcattccatttttccagGATGAGAAAGGTGCTTTCAACTTTGACAAGCGAAACGGTGATCAACCCAGAGACTGGGGAGCAGgtgggtaattcactatggggtgaggtaattggaatgagggacacagccaa Alignment from Exonerate_protein2genome GATGAGAAAGGTGCTTTCAACTTTGACAAG-GAGACTGTGATCAACCCAGAGACTGGGGAACAG agcagtagttgcctctggtaagcatggatgaactcattccatttttccagGATGAGAAAGGTGCTTTCAACTTTGACAAGCGAAACGGTGATCAACCCAGAGACTGGGGAGCAGgtgggtaattcactatggggtgaggtaattggaatgagggacacagccaa Alignment from Exonerate_coding2genome GATGAGAAAGGTGCTTTCAACTTTGACAAG-GAGACTGTGATCAACCCAGAGACTGGGGAACAG agcagtagttgcctctggtaagcatggatgaactcattccatttttccagGATGAGAAAGGTGCTTTCAACTTTGACAAGCGAAACGGTGATCAACCCAGAGACTGGGGAGCAGgtgggtaattcactatggggtgaggtaattggaatgagggacacagccaa Alignment from GeneWise GATGAGAAAGGTGCTTTCAACTTTGAC-AAGGAGACTGTGATCAACCCAGAGACTGGGGAACAG agcagtagttgcctctggtaagcatggatgaactcattccatttttccagGATGAGAAAGGTGCTTTCAACTTTGACAAGCGAAACGGTGATCAACCCAGAGACTGGGGAGCAGgtgggtaattcactatggggtgaggtaattggaatgagggacacagccaa #### Dpp3_ID746_7 --> 0 - 2 Original Alignment GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATT-CAGGACAAAGGCCCCATTGTAGAGag tgaggggatcactcaaagctctgagggtttaatatgcaggtgtttttcagGCTTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGCTCAATTGAGGCCCATAAGAGGGGTTCCCACTTCTGGATTCCAGGACAAAGGCCCCATTGTAAAGaggtagggtgccagcccaggtttcgactcccccaactcccttccaatgcatt Alignment from CESAR GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATT-CAGGACAAAGGCCCCATTGTAGAGag tgaggggatcactcaaagctctgagggtttaatatgcaggtgtttttcagGCTTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGCTCAATTGAGGCCCATAAGAGGGGTTCCCACTTCTGGATTCCAGGACAAAGGCCCCATTGTAAAGaggtagggtgccagcccaggtttcgactcccccaactcccttccaatgcatt Alignment from Spaln_aa2Genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATT-CAGGACAAAGGCCCCATTGTAGAGAG tgaggggatcactcaaagctctgagggtttaatatgcaggtgtttttcagGCTTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGCTCAATTGAGGCCCATAAGAGGGGTTCCCACTTCTGGATTcCAGGACAAAGGCCCCATTGTAAAGAGgtagggtgccagcccaggtttcgactcccccaactcccttccaatgcatt Alignment from Spaln_nt2Genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATT-CAGGACAAAGGCCCCATTGTAGAGAG tgaggggatcactcaaagctctgagggtttaatatgcaggtgtttttcagGCTTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGCTCAATTGAGGCCCATAAGAGGGGTTCCCACTTCTGGATTCCAGGACAAAGGCCCCATTGTAAAGAGgtagggtgccagcccaggtttcgactcccccaactcccttccaatgcatt Alignment from Pairagon GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATT-CAGGACAAAGGCCCCATTGTAGAGAG tgaggggatcactcaaagctctgagggtttaatatgcaggtgtttttcagGCTTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGCTCAATTGAGGCCCATAAGAGGGGTTCCCACTTCTGGATTCCAGGACAAAGGCCCCATTGTAAAGAGgtagggtgccagcccaggtttcgactcccccaactcccttccaatgcatt Alignment from Exonerate_protein2genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATT-CAGGACAAAGGCCCCATTGTAGAGAG tgaggggatcactcaaagctctgagggtttaatatgcaggtgtttttcagGCTTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGCTCAATTGAGGCCCATAAGAGGGGTTCCCACTTCTGGATTCCAGGACAAAGGCCCCATTGTAAAGAGgtagggtgccagcccaggtttcgactcccccaactcccttccaatgcatt Alignment from Exonerate_coding2genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATT-CAGGACAAAGGCCCCATTGTAGAGAG tgaggggatcactcaaagctctgagggtttaatatgcaggtgtttttcagGCTTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGCTCAATTGAGGCCCATAAGAGGGGTTCCCACTTCTGGATTCCAGGACAAAGGCCCCATTGTAAAGAGgtagggtgccagcccaggtttcgactcccccaactcccttccaatgcatt Alignment from GeneWise GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGG-ATTCAGGACAAAGGCCCCATTGTAGAGAG tgaggggatcactcaaagctctgagggtttaatatgcaggtgtttttcagGCTTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGCTCAATTGAGGCCCATAAGAGGGGTTCCCACTTCTGGATTCCAGGACAAAGGCCCCATTGTAAAGAGgtagggtgccagcccaggtttcgactcccccaactcccttccaatgcatt #### Drap1_ID985_5 --> 1 - 0 Original Alignment CCTCGAag gGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGC-AAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAaggtgagtagccaggtctgcagaactaaccccttcctccctcaggGGCCGTAAACCAGGAAGCAGTGGCAGGAAGAATGGAGGCACAGGAAGCCAAAGGCAAAGATAAGAAGCTGTCTGGGACAGACTCTGAGCAAGAGgtgagtaaggctggtgggcaatggccacagttgtgtctgcttttttgtac Alignment from CESAR CCTCGAag gGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGC-AAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAaggtgtgtagccaggtctgcagaactaaccccttcctccctcaggGGCCGTAAACCAGGAAGCAGTGGCAGGAAGAATGGAGGCACAGGAAGCCAAAGGCAAAGATAAGAAGCTGTCTGGGACAGACTCTGAGCAAGAGgtgagtaaggctggtgggcaatggccacagttgtgtctgcttttttgtac Alignment from Spaln_aa2Genome CCTCGAAG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGC-AAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtgagtagccaggtctgcagaactaaccccttcctccctcagGGGCCGTAAACCAGGAAGCAGTGGCAGGAAGAATGGAGGCACAGGAAGCcAAAGGCAAAGATAAGAAGCTGTCTGGGACAGACTCTGAGCAAGAGgtgagtaaggctggtgggcaatggccacagttgtgtctgcttttttgtac Alignment from Spaln_nt2Genome CCTCGAAG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGC-AAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtgagtagccaggtctgcagaactaaccccttcctccctcagGGGCCGTAAACCAGGAAGCAGTGGCAGGAAGAATGGAGGCACAGGAAGCCAAAGGCAAAGATAAGAAGCTGTCTGGGACAGACTCTGAGCAAGAGgtgagtaaggctggtgggcaatggccacagttgtgtctgcttttttgtac Alignment from Pairagon CCTCGAAG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAG-CAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtgagtagccaggtctgcagaactaaccccttcctccctcagGGGCCGTAAACCAGGAAGCAGTGGCAGGAAGAATGGAGGCACAGGAAGCCAAAGGCAAAGATAAGAAGCTGTCTGGGACAGACTCTGAGCAAGAGgtgagtaaggctggtgggcaatggccacagttgtgtctgcttttttgtac Alignment from Exonerate_protein2genome CCTCGAAG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGC-AAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtgagtagccaggtctgcagaactaaccccttcctccctcagGGGCCGTAAACCAGGAAGCAGTGGCAGGAAGAATGGAGGCACAGGAAGCCAAAGGCAAAGATAAGAAGCTGTCTGGGACAGACTCTGAGCAAGAGgtgagtaaggctggtgggcaatggccacagttgtgtctgcttttttgtac Alignment from Exonerate_coding2genome CCTCGAAG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGC-AAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtgagtagccaggtctgcagaactaaccccttcctccctcagGGGCCGTAAACCAGGAAGCAGTGGCAGGAAGAATGGAGGCACAGGAAGCCAAAGGCAAAGATAAGAAGCTGTCTGGGACAGACTCTGAGCAAGAGgtgagtaaggctggtgggcaatggccacagttgtgtctgcttttttgtac Alignment from GeneWise CCTCGAAG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGA-AGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtgagtagccaggtctgcagaactaaccccttcctccctcagGGGCCGTAAACCAGGAAGCAGTGGCAGGAAGAATGGAGGCACAGGAAGCCAAAGGCAAAGATAAGAAGCTGTCTGGGACAGACTCTGAGCAAGAGgtgagtaaggctggtgggcaatggccacagttgtgtctgcttttttgtac #### Drap1_ID986_4 --> 1 - 2 Original Alignment gAAGCAGTGCATTGAACTCGAGCAG-CAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAag gGGCCGGA tattccccaagtgtttgaggggccgacccctcttatcccttttcctacaggATGCAGTGCATTGAACTTGAGCAGCCAGTTTGACTTCTTGAAAGACCTAGTGGCATCGGTGCCTGACATGCAGGGGGATGGGGAGGACAACCATGTAGATGGGGAGAAGGGGCCTCGAaggtgtgtagccaggtctgcaggtttctctatgtcactttgcaggGGCCGTA Alignment from CESAR gAAGCAGTGCATTGAACTCGAGCAG-CAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAag gGGCCGGA tattccccaagtgtttgaggggccgacccctcttatcccttttcctacaggATGCAGTGCATTGAACTTGAGCAGCCAGTTTGACTTCTTGAAAGACCTAGTGGCATCGGTGCCTGACATGCAGGGGGATGGGGAGGACAACCATGTAGATGGGGAGAAGGGGCCTCGAaggtgtgtagccaggtctgcagaactaaccccttcctccctcaggGGCCGTA Alignment from Spaln_aa2Genome GAAGCAGTGCATTGAACTCGAGCAG-CAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GGGCCGGA tattccccaagtgtttgaggggccgacccctcttatcccttttcctacagGATGCAGTGCATTGAACTTGAGCAGcCAGTTTGACTTCTTGAAAGACCTAGTGGCATCGGTGCCTGACATGCAGGGGGATGGGGAGGACAACCATGTAGATGGGGAGAAGGGGCCTCGAAGgtgtgtagccaggtctgcaggtttctctatgtcactttgcagGGGCCGTA Alignment from Spaln_nt2Genome GAAGCAGTGCATTGAACTCGAGCAG-CAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GGGCCGGA tattccccaagtgtttgaggggccgacccctcttatcccttttcctacagGATGCAGTGCATTGAACTTGAGCAGCCAGTTTGACTTCTTGAAAGACCTAGTGGCATCGGTGCCTGACATGCAGGGGGATGGGGAGGACAACCATGTAGATGGGGAGAAGGGGCCTCGAAGgtgtgtagccaggtctgcaggtttctctatgtcactttgcagGGGCCGTA Alignment from Pairagon GAAGCAGTGCATTGAACTCGAGCAG-CAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GGGCCGGA tattccccaagtgtttgaggggccgacccctcttatcccttttcctacagGATGCAGTGCATTGAACTTGAGCAGCCAGTTTGACTTCTTGAAAGACCTAGTGGCATCGGTGCCTGACATGCAGGGGGATGGGGAGGACAACCATGTAGATGGGGAGAAGGGGCCTCGAAGgtgtgtagccaggtctgcaggtttctctatgtcactttgcagGGGCCGTA Alignment from Exonerate_protein2genome GAAGCAGTGCATTGAACTCGAGCAG-CAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GGGCCGGA tattccccaagtgtttgaggggccgacccctcttatcccttttcctacagGATGCAGTGCATTGAACTTGAGCAGCCAGTTTGACTTCTTGAAAGACCTAGTGGCATCGGTGCCTGACATGCAGGGGGATGGGGAGGACAACCATGTAGATGGGGAGAAGGGGCCTCGAAGgtgtgtagccaggtctgcaggtttctctatgtcactttgcagGGGCCGTA Alignment from Exonerate_coding2genome GAAGCAGTGCATTGAACTCGAGCAG-CAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GGGCCGGA tattccccaagtgtttgaggggccgacccctcttatcccttttcctacagGATGCAGTGCATTGAACTTGAGCAGCCAGTTTGACTTCTTGAAAGACCTAGTGGCATCGGTGCCTGACATGCAGGGGGATGGGGAGGACAACCATGTAGATGGGGAGAAGGGGCCTCGAAGgtgtgtagccaggtctgcaggtttctctatgtcactttgcagGGGCCGTA Alignment from GeneWise --AAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAGG------------------------------------------GGCCGGA tattccccaagtgtttgaggggccgacccctcttatcccttttcctacagGATGCAGTGCATTGAACTTGAGCAGCCAGTTTGACTTCTTGAAAGACCTAGTGGCATCGGTGCCTGACATGCAGGGGGATGGGGAGGACAACCATGTAGATGGGGAGAAGGGGCCTCGAAGGTGTGTAGCCAGGTCTGCAGGTTTCTCTATGTCACTTTGCAGGGGCCGTA #### Eef1g_ID2562_4 --> 2 - 0 Original Alignment taAGCAATGAGGAGCTGCGAGGA-AGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttaatgttgtgatgtgctcaaagttctaccatcccacccaccccttccagtaAGCAATGAGGAGCTGCGAGGACAGTGCACCAGAGGCGGCAGCTCAGGTGGCACAGTGGGTCAGCTTTGCAGACAGTGACATCGTTCCACCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtttgttttttggcactcaggtcggtgctgggccatcaatagagtgagag Alignment from CESAR taAGCAATGAGGAGCTGCGAGGA-AGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttaatgttgtgatgtgctcaaagttctaccatcccacccaccccttccagtaAGCAATGAGGAGCTGCGAGGACAGTGCACCAGAGGCGGCAGCTCAGGTGGCACAGTGGGTCAGCTTTGCAGACAGTGACATCGTTCCACCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtttgttttttggcactcaggtcggtgctgggccatcaatagagtgagag Alignment from Spaln_aa2Genome TAAGCAATGAGGAGCTGCGAGGA-AGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttaatgttgtgatgtgctcaaagttctaccatcccacccaccccttccagTAAGCAATGAGGAGCTGCGAGGAcAGTGCACCAGAGGCGGCAGCTCAGGTGGCACAGTGGGTCAGCTTTGCAGACAGTGACATCGTTCCACCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtttgttttttggcactcaggtcggtgctgggccatcaatagagtgagag Alignment from Spaln_nt2Genome TAAGCAATGAGGAGCTGCGAGGA-AGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttaatgttgtgatgtgctcaaagttctaccatcccacccaccccttccagTAAGCAATGAGGAGCTGCGAGGACAGTGCACCAGAGGCGGCAGCTCAGGTGGCACAGTGGGTCAGCTTTGCAGACAGTGACATCGTTCCACCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtttgttttttggcactcaggtcggtgctgggccatcaatagagtgagag Alignment from Pairagon TAAGCAATGAGGAGCTGCGAGGA-AGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttaatgttgtgatgtgctcaaagttctaccatcccacccaccccttccagTAAGCAATGAGGAGCTGCGAGGACAGTGCACCAGAGGCGGCAGCTCAGGTGGCACAGTGGGTCAGCTTTGCAGACAGTGACATCGTTCCACCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtttgttttttggcactcaggtcggtgctgggccatcaatagagtgagag Alignment from Exonerate_protein2genome TAAGCAATGAGGAGCTGCGAGGA-AGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttaatgttgtgatgtgctcaaagttctaccatcccacccaccccttccagTAAGCAATGAGGAGCTGCGAGGACAGTGCACCAGAGGCGGCAGCTCAGGTGGCACAGTGGGTCAGCTTTGCAGACAGTGACATCGTTCCACCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtttgttttttggcactcaggtcggtgctgggccatcaatagagtgagag Alignment from Exonerate_coding2genome TAAGCAATGAGGAGCTGCGAGGA-AGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttaatgttgtgatgtgctcaaagttctaccatcccacccaccccttccagTAAGCAATGAGGAGCTGCGAGGACAGTGCACCAGAGGCGGCAGCTCAGGTGGCACAGTGGGTCAGCTTTGCAGACAGTGACATCGTTCCACCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtttgttttttggcactcaggtcggtgctgggccatcaatagagtgagag Alignment from GeneWise TAAGCAATGAGGAGCTGCGAGGA-AGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG ttaatgttgtgatgtgctcaaagttctaccatcccacccaccccttccagTAAGCAATGAGGAGCTGCGAGGACAGTGCACCAGAGGCGGCAGCTCAGGTGGCACAGTGGGTCAGCTTTGCAGACAGTGACATCGTTCCACCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtttgttttttggcactcaggtcggtgctgggccatcaatagagtgagag #### Eef1g_ID2567_9 --> 2 - 0 Original Alignment ggATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACC-AACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggagaagcaaaggtagtaggtatcctttatctgtgttatgacaggtATGTTCCAGCGACTGGACAAATTGAGGAAGAATGCCTTCGCTAGTGTTATCCTCTTTGGAACTCAATAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTTCGAGGCCAGGAGCTAGCCTTTCCAgtaagtgatgctgtgggaagagagagatcataataggggtccagcggctt Alignment from CESAR ggATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACC-AACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggagaagcaaaggtagtaggtatcctttatctgtgttatgacaggtATGTTCCAGCGACTGGACAAATTGAGGAAGAATGCCTTCGCTAGTGTTATCCTCTTTGGAACTCAATAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTTCGAGGCCAGGAGCTAGCCTTTCCAgtaagtgatgctgtgggaagagagagatcataataggggtccagcggctt Alignment from Spaln_aa2Genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACC-AACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggagaagcaaaggtagtaggtatcctttatctgtgttatgacagGTATGTTCCAGCGACTGGACAAATTGAGGAAGAATGCCTTCGCTAGTGTTATCCTCTTTGGAACTcAATAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTTCGAGGCCAGGAGCTAGCCTTTCCAgtaagtgatgctgtgggaagagagagatcataataggggtccagcggctt Alignment from Spaln_nt2Genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAAC-CAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggagaagcaaaggtagtaggtatcctttatctgtgttatgacagGTATGTTCCAGCGACTGGACAAATTGAGGAAGAATGCCTTCGCTAGTGTTATCCTCTTTGGAACTCAATAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTTCGAGGCCAGGAGCTAGCCTTTCCAgtaagtgatgctgtgggaagagagagatcataataggggtccagcggctt Alignment from Pairagon GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAAC-CAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggagaagcaaaggtagtaggtatcctttatctgtgttatgacagGTATGTTCCAGCGACTGGACAAATTGAGGAAGAATGCCTTCGCTAGTGTTATCCTCTTTGGAACTCAATAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTTCGAGGCCAGGAGCTAGCCTTTCCAgtaagtgatgctgtgggaagagagagatcataataggggtccagcggctt Alignment from Exonerate_protein2genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACC-AACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggagaagcaaaggtagtaggtatcctttatctgtgttatgacagGTATGTTCCAGCGACTGGACAAATTGAGGAAGAATGCCTTCGCTAGTGTTATCCTCTTTGGAACTCAATAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTTCGAGGCCAGGAGCTAGCCTTTCCAgtaagtgatgctgtgggaagagagagatcataataggggtccagcggctt Alignment from Exonerate_coding2genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACC-AACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggagaagcaaaggtagtaggtatcctttatctgtgttatgacagGTATGTTCCAGCGACTGGACAAATTGAGGAAGAATGCCTTCGCTAGTGTTATCCTCTTTGGAACTCAATAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTTCGAGGCCAGGAGCTAGCCTTTCCAgtaagtgatgctgtgggaagagagagatcataataggggtccagcggctt Alignment from GeneWise GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGA-ACCAACAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggagaagcaaaggtagtaggtatcctttatctgtgttatgacagGTATGTTCCAGCGACTGGACAAATTGAGGAAGAATGCCTTCGCTAGTGTTATCCTCTTTGGAACTCAATAACAGCAGCTCCATTTCTGGTGTTTGGGTCTTTCGAGGCCAGGAGCTAGCCTTTCCAgtaagtgatgctgtgggaagagagagatcataataggggtccagcggctt #### Efemp2_ID1029_2 --> 0 - 1 Original Alignment GAATGCACAGATGGCTATGAGTGGGATGCAGACAGC-CAGCACTGCCGGg ctagtcaagacagcaataatggatgctggagattctggatctcttcccagGAATGTACAGATGGCTATGAGTGGGATGCAGATAGCCCAACACTGCCAGggtgagtccttgtttgggtactagccacgctctctgtgcctaggagggggg Alignment from CESAR GAATGCACAGATGGCTATGAGTGGGATGCAGACAGC-CAGCACTGCCGGg ctagtcaagacagcaataatggatgctggagattctggatctcttcccagGAATGTACAGATGGCTATGAGTGGGATGCAGATAGCCCAACACTGCCAGggtgagtccttgtttgggtactagccacgctctctgtgcctaggagggggg Alignment from Spaln_aa2Genome GAATGCACAGATGGCTATGAGTGGGATGCAGACAGC-CAGCACTGCCGGG ctagtcaagacagcaataatggatgctggagattctggatctcttcccagGAATGTACAGATGGCTATGAGTGGGATGCAGATAGCcCAACACTGCCAGGgtgagtccttgtttgggtactagccacgctctctgtgcctaggagggggg Alignment from Spaln_nt2Genome GAATGCACAGATGGCTATGAGTGGGATGCAGACAGCC-AGCACTGCCGGG ctagtcaagacagcaataatggatgctggagattctggatctcttcccagGAATGTACAGATGGCTATGAGTGGGATGCAGATAGCCCAACACTGCCAGGgtgagtccttgtttgggtactagccacgctctctgtgcctaggagggggg Alignment from Pairagon GAATGCACAGATGGCTATGAGTGGGATGCAGACAG-CCAGCACTGCCGGG ctagtcaagacagcaataatggatgctggagattctggatctcttcccagGAATGTACAGATGGCTATGAGTGGGATGCAGATAGCCCAACACTGCCAGGgtgagtccttgtttgggtactagccacgctctctgtgcctaggagggggg Alignment from Exonerate_protein2genome GAATGCACAGATGGCTATGAGTGGGATGCAGACAGC-CAGCACTGCCGGG ctagtcaagacagcaataatggatgctggagattctggatctcttcccagGAATGTACAGATGGCTATGAGTGGGATGCAGATAGCCCAACACTGCCAGGgtgagtccttgtttgggtactagccacgctctctgtgcctaggagggggg Alignment from Exonerate_coding2genome GAATGCACAGATGGCTATGAGTGGGATGCAGACAGC-CAGCACTGCCGGG ctagtcaagacagcaataatggatgctggagattctggatctcttcccagGAATGTACAGATGGCTATGAGTGGGATGCAGATAGCCCAACACTGCCAGGgtgagtccttgtttgggtactagccacgctctctgtgcctaggagggggg Alignment from GeneWise GAATGCACAGATGGCTATGAGTGGGATGCAGAC-AGCCAGCACTGCCGGG ctagtcaagacagcaataatggatgctggagattctggatctcttcccagGAATGTACAGATGGCTATGAGTGGGATGCAGATAGCCCAACACTGCCAGGgtgagtccttgtttgggtactagccacgctctctgtgcctaggagggggg #### Efemp2_ID1032_5 --> 2 - 1 Original Alignment acATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAG-TGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGg aggggcggtatggcctgtgttccatttatttaaaattctctgtttttcagacATAGATGAATGTCGTTACCGCTATTGCCAGCATCGATGTGTGAATCTGCCAGGCTCGTTTCGATGCCAGCTGTGAGCCAGGCTTCCAGTTGGGACCTAACATTCGCTCTTGTGTGggtaagaggctgtgtcctacaaggttctgagatcctgggtgaaccagtgtg Alignment from CESAR acATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAG-TGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGg aggggcggtatggcctgtgttccatttatttaaaattctctgtttttcagacATAGATGAATGTCGTTACCGCTATTGCCAGCATCGATGTGTGAATCTGCCAGGCTCGTTTCGATGCCAGCTGTGAGCCAGGCTTCCAGTTGGGACCTAACATTCGCTCTTGTGTGggtaagaggctgtgtcctacaaggttctgagatcctgggtgaaccagtgtg Alignment from Spaln_aa2Genome ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAG-TGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG aggggcggtatggcctgtgttccatttatttaaaattctctgtttttcagACATAGATGAATGTCGTTACCGCTATTGCCAGCATCGATGTGTGAATCTGCCAGGCTCGTTTCGATGCCAGcTGTGAGCCAGGCTTCCAGTTGGGACCTAACATTCGCTCTTGTGTGGgtaagaggctgtgtcctacaaggttctgagatcctgggtgaaccagtgtg Alignment from Spaln_nt2Genome ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAG-TGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG aggggcggtatggcctgtgttccatttatttaaaattctctgtttttcagACATAGATGAATGTCGTTACCGCTATTGCCAGCATCGATGTGTGAATCTGCCAGGCTCGTTTCGATGCCAGCTGTGAGCCAGGCTTCCAGTTGGGACCTAACATTCGCTCTTGTGTGGgtaagaggctgtgtcctacaaggttctgagatcctgggtgaaccagtgtg Alignment from Pairagon ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAG-TGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG aggggcggtatggcctgtgttccatttatttaaaattctctgtttttcagACATAGATGAATGTCGTTACCGCTATTGCCAGCATCGATGTGTGAATCTGCCAGGCTCGTTTCGATGCCAGCTGTGAGCCAGGCTTCCAGTTGGGACCTAACATTCGCTCTTGTGTGGgtaagaggctgtgtcctacaaggttctgagatcctgggtgaaccagtgtg Alignment from Exonerate_protein2genome ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAG-TGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG aggggcggtatggcctgtgttccatttatttaaaattctctgtttttcagACATAGATGAATGTCGTTACCGCTATTGCCAGCATCGATGTGTGAATCTGCCAGGCTCGTTTCGATGCCAGCTGTGAGCCAGGCTTCCAGTTGGGACCTAACATTCGCTCTTGTGTGGgtaagaggctgtgtcctacaaggttctgagatcctgggtgaaccagtgtg Alignment from Exonerate_coding2genome ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAG-TGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG aggggcggtatggcctgtgttccatttatttaaaattctctgtttttcagACATAGATGAATGTCGTTACCGCTATTGCCAGCATCGATGTGTGAATCTGCCAGGCTCGTTTCGATGCCAGCTGTGAGCCAGGCTTCCAGTTGGGACCTAACATTCGCTCTTGTGTGGgtaagaggctgtgtcctacaaggttctgagatcctgggtgaaccagtgtg Alignment from GeneWise ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGC-CAGTGTGAGCCAGGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG aggggcggtatggcctgtgttccatttatttaaaattctctgtttttcagACATAGATGAATGTCGTTACCGCTATTGCCAGCATCGATGTGTGAATCTGCCAGGCTCGTTTCGATGCCAGCTGTGAGCCAGGCTTCCAGTTGGGACCTAACATTCGCTCTTGTGTGGgtaagaggctgtgtcctacaaggttctgagatcctgggtgaaccagtgtg #### Efemp2_ID1035_8 --> 2 - 2 Original Alignment atATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTAT-GTCCAAGTGTCAGACaa aacttaccatgagtactgtactaggcccctgcccttctattctgtgacagatATAGATGATTGCGAGACAGGTGCACACCGATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGCTGGTTACCGCTGTGTGGAGACCAACCGTTGTGTGGAGCCATATCGTCCAAGTATCAGACaagtgaggtcacctggcacccacttggtgtgcagatccagatgtctgtgggg Alignment from CESAR atATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTAT-GTCCAAGTGTCAGACaa aacttaccatgagtactgtactaggcccctgcccttctattctgtgacagatATAGATGATTGCGAGACAGGTGCACACCGATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGCTGGTTACCGCTGTGTGGAGACCAACCGTTGTGTGGAGCCATATCGTCCAAGTATCAGACaagtgaggtcacctggcacccacttggtgtgcagatccagatgtctgtgggg Alignment from Spaln_aa2Genome ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTAT-GTCCAAGTGTCAGACAA aacttaccatgagtactgtactaggcccctgcccttctattctgtgacagATATAGATGATTGCGAGACAGGTGCACACCGATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGCTGGTTACCGCTGTGTGGAGACCAACCGTTGTGTGGAGCCATATcGTCCAAGTATCAGACAAgtgaggtcacctggcacccacttggtgtgcagatccagatgtctgtgggg Alignment from Spaln_nt2Genome ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTAT-GTCCAAGTGTCAGACAA aacttaccatgagtactgtactaggcccctgcccttctattctgtgacagATATAGATGATTGCGAGACAGGTGCACACCGATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGCTGGTTACCGCTGTGTGGAGACCAACCGTTGTGTGGAGCCATATCGTCCAAGTATCAGACAAgtgaggtcacctggcacccacttggtgtgcagatccagatgtctgtgggg Alignment from Pairagon ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTAT-GTCCAAGTGTCAGACAA aacttaccatgagtactgtactaggcccctgcccttctattctgtgacagATATAGATGATTGCGAGACAGGTGCACACCGATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGCTGGTTACCGCTGTGTGGAGACCAACCGTTGTGTGGAGCCATATCGTCCAAGTATCAGACAAgtgaggtcacctggcacccacttggtgtgcagatccagatgtctgtgggg Alignment from Exonerate_protein2genome ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTAT-GTCCAAGTGTCAGACAA aacttaccatgagtactgtactaggcccctgcccttctattctgtgacagATATAGATGATTGCGAGACAGGTGCACACCGATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGCTGGTTACCGCTGTGTGGAGACCAACCGTTGTGTGGAGCCATATCGTCCAAGTATCAGACAAgtgaggtcacctggcacccacttggtgtgcagatccagatgtctgtgggg Alignment from Exonerate_coding2genome ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTAT-GTCCAAGTGTCAGACAA aacttaccatgagtactgtactaggcccctgcccttctattctgtgacagATATAGATGATTGCGAGACAGGTGCACACCGATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGCTGGTTACCGCTGTGTGGAGACCAACCGTTGTGTGGAGCCATATCGTCCAAGTATCAGACAAgtgaggtcacctggcacccacttggtgtgcagatccagatgtctgtgggg Alignment from GeneWise ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTAT---GTCCAAGTGTCAGACAAC-- aacttaccatgagtactgtactaggcccctgcccttctattctgtgacagATATAGATGATTGCGAGACAGGTGCACACCGATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGCTGGTTACCGCTGTGTGGAGACCAACCGTTGTGTGGAGCCATATCGTCCAAGTATCAGACAAGTGAGgtcacctggcacccacttggtgtgcagatccagatgtctgtgggg #### Ehbp1l1_ID1220_15 --> 0 - 1 Original Alignment CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCT-GAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAg ctggctggggtggggtcacctgtcctctgcagctgcctctccccttccagCAACGGTTCCAGGACACAAGTCAGTATGTGTGCGCAGAGCAGCAAGCCCTGGAGCAAGAACAGGGACAGGTAGATGGCAGGGCTGCTCGAGGTGCAGAAGCAGCTGAGGAGCCTGATGGAATCAggtaggtcccctgacttttggttttgctcctttagaattgacagccttgtc Alignment from CESAR CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCT-GAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAg ctggctggggtggggtcacctgtcctctgcagctgcctctccccttccagCAACGGTTCCAGGACACAAGTCAGTATGTGTGCGCAGAGCAGCAAGCCCTGGAGCAAGAACAGGGACAGGTAGATGGCAGGGCTGCTCGAGGTGCAGAAGCAGCTGAGGAGCCTGATGGAATCAggtaggtcccctgacttttggttttgctcctttagaattgacagccttgtc Alignment from Spaln_aa2Genome CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCT-GAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG ctggctggggtggggtcacctgtcctctgcagctgcctctccccttccagCAACGGTTCCAGGACACAAGTCAGTATGTGTGCGCAGAGCAGCAAGCCCTGGAGCAAGAACAGGGACAGGTAGATGGCAGGGCTGCTcGAGGTGCAGAAGCAGCTGAGGAGCCTGATGGAATCAGgtaggtcccctgacttttggttttgctcctttagaattgacagccttgtc Alignment from Spaln_nt2Genome CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCT-GAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG ctggctggggtggggtcacctgtcctctgcagctgcctctccccttccagCAACGGTTCCAGGACACAAGTCAGTATGTGTGCGCAGAGCAGCAAGCCCTGGAGCAAGAACAGGGACAGGTAGATGGCAGGGCTGCTCGAGGTGCAGAAGCAGCTGAGGAGCCTGATGGAATCAGgtaggtcccctgacttttggttttgctcctttagaattgacagccttgtc Alignment from Pairagon CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCT-GAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG ctggctggggtggggtcacctgtcctctgcagctgcctctccccttccagCAACGGTTCCAGGACACAAGTCAGTATGTGTGCGCAGAGCAGCAAGCCCTGGAGCAAGAACAGGGACAGGTAGATGGCAGGGCTGCTCGAGGTGCAGAAGCAGCTGAGGAGCCTGATGGAATCAGgtaggtcccctgacttttggttttgctcctttagaattgacagccttgtc Alignment from Exonerate_protein2genome CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCT-GAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG ctggctggggtggggtcacctgtcctctgcagctgcctctccccttccagCAACGGTTCCAGGACACAAGTCAGTATGTGTGCGCAGAGCAGCAAGCCCTGGAGCAAGAACAGGGACAGGTAGATGGCAGGGCTGCTCGAGGTGCAGAAGCAGCTGAGGAGCCTGATGGAATCAGgtaggtcccctgacttttggttttgctcctttagaattgacagccttgtc Alignment from Exonerate_coding2genome CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCCGCT-GAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG ctggctggggtggggtcacctgtcctctgcagctgcctctccccttccagCAACGGTTCCAGGACACAAGTCAGTATGTGTGCGCAGAGCAGCAAGCCCTGGAGCAAGAACAGGGACAGGTAGATGGCAGGGCTGCTCGAGGTGCAGAAGCAGCTGAGGAGCCTGATGGAATCAGgtaggtcccctgacttttggttttgctcctttagaattgacagccttgtc Alignment from GeneWise CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGGAGGGCC-GCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG ctggctggggtggggtcacctgtcctctgcagctgcctctccccttccagCAACGGTTCCAGGACACAAGTCAGTATGTGTGCGCAGAGCAGCAAGCCCTGGAGCAAGAACAGGGACAGGTAGATGGCAGGGCTGCTCGAGGTGCAGAAGCAGCTGAGGAGCCTGATGGAATCAGgtaggtcccctgacttttggttttgctcctttagaattgacagccttgtc #### Ehbp1l1_ID1224_11 --> 1 - 0 Original Alignment cGATTATTTCTCCCTTGATCCCCTCAAC-ATCAAACAGAACAACAAGCAG tgccagggcaccagggacatccctccattaactgatttatctcttaatagcGATTATTTCTCCCTTGATCCCCTCAACCATCAAACAGAACAACAAGCAGgtacgttgaaggaaggagctgtagtctggaggtaagatccgacaagggag Alignment from CESAR cGATTATTTCTCCCTTGATCCCCTCAAC-ATCAAACAGAACAACAAGCAG tgccagggcaccagggacatccctccattaactgatttatctcttaatagcGATTATTTCTCCCTTGATCCCCTCAACCATCAAACAGAACAACAAGCAGgtacgttgaaggaaggagctgtagtctggaggtaagatccgacaagggag Alignment from Spaln_aa2Genome CGATTATTTCTCCCTTGATCCCCTCAACATCAAACAGAACAACAAGCAG tgccagggcaccagggacatccctccattaactgatttatctcttaatagCGATTATTTCTCCCTTGATCCCCTCAAC---CATCAAACAGAACAACAAgcaggtacgttgaaggaaggagctgtagtctggaggtaagatccgacaagggag Alignment from Spaln_nt2Genome CGATTATTTCTCCCTTGATCCCCTCAA-CATCAAACAGAACAACAAGCAG tgccagggcaccagggacatccctccattaactgatttatctcttaatagCGATTATTTCTCCCTTGATCCCCTCAACCATCAAACAGAACAACAAGCAGgtacgttgaaggaaggagctgtagtctggaggtaagatccgacaagggag Alignment from Pairagon CGATTATTTCTCCCTTGATCCCCTCAA-CATCAAACAGAACAACAAGCAG tgccagggcaccagggacatccctccattaactgatttatctcttaatagCGATTATTTCTCCCTTGATCCCCTCAACCATCAAACAGAACAACAAGCAGgtacgttgaaggaaggagctgtagtctggaggtaagatccgacaagggag Alignment from Exonerate_protein2genome CGATTATTTCTCCCTTGATCCCCTCAAC-ATCAAACAGAACAACAAGCAG tgccagggcaccagggacatccctccattaactgatttatctcttaatagCGATTATTTCTCCCTTGATCCCCTCAACCATCAAACAGAACAACAAGCAGgtacgttgaaggaaggagctgtagtctggaggtaagatccgacaagggag Alignment from Exonerate_coding2genome CGATTATTTCTCCCTTGATCCCCTCAAC-ATCAAACAGAACAACAAGCAG tgccagggcaccagggacatccctccattaactgatttatctcttaatagCGATTATTTCTCCCTTGATCCCCTCAACCATCAAACAGAACAACAAGCAGgtacgttgaaggaaggagctgtagtctggaggtaagatccgacaagggag Alignment from GeneWise tgccagggcaccagggacatccctccattaactgatttatctcttaatagcgattatttctcccttgatcccctcaaccatcaaacagaacaacaagcaggtacgttgaaggaaggagctgtagtctggaggtaagatccgacaagggag #### Eif1ad_ID950_3 --> 2 - 2 Original Alignment ggGATTTCCTCATTGTTGACCCTATTGAA-GAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACtg tgagttatgtccttcactgcctccgacgctgtcactctcttctaccccagggGATTTCCTCATTGTTGACCCTTTTGAACGGAGGTGAAAAAGTGAAGGCGGAGATCTCTTTTGTACTCTGCAAGAACCATGTCCGCTCCCTACAGAAGGAGGGTCAAtggtgagttggtcttcctctgccaccctctggcaataagagactgttagcta Alignment from CESAR ggGATTTCCTCATTGTTGACCCTATTGAA-GAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACtg tgagttatgtccttcactgcctccgacgctgtcactctcttctaccccagggGATTTCCTCATTGTTGACCCTTTTGAACGGAGGTGAAAAAGTGAAGGCGGAGATCTCTTTTGTACTCTGCAAGAACCATGTCCGCTCCCTACAGAAGGAGGGTCAAtggtgagttggtcttcctctgccaccctctggcaataagagactgttagcta Alignment from Spaln_aa2Genome GGGATTTCCTCATTGTTGACCCTATTGAA-GAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG tgagttatgtccttcactgcctccgacgctgtcactctcttctaccccagGGGATTTCCTCATTGTTGACCCTTTTGAAcGGAGGTGAAAAAGTGAAGGCGGAGATCTCTTTTGTACTCTGCAAGAACCATGTCCGCTCCCTACAGAAGGAGGGTCAATGgtgagttggtcttcctctgccaccctctggcaataagagactgttagcta Alignment from Spaln_nt2Genome GGGATTTCCTCATTGTTGACCCTATTGAA-GAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG tgagttatgtccttcactgcctccgacgctgtcactctcttctaccccagGGGATTTCCTCATTGTTGACCCTTTTGAACGGAGGTGAAAAAGTGAAGGCGGAGATCTCTTTTGTACTCTGCAAGAACCATGTCCGCTCCCTACAGAAGGAGGGTCAATGgtgagttggtcttcctctgccaccctctggcaataagagactgttagcta Alignment from Pairagon GGGATTTCCTCATTGTTGACCCTATTGAA-GAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG tgagttatgtccttcactgcctccgacgctgtcactctcttctaccccagGGGATTTCCTCATTGTTGACCCTTTTGAACGGAGGTGAAAAAGTGAAGGCGGAGATCTCTTTTGTACTCTGCAAGAACCATGTCCGCTCCCTACAGAAGGAGGGTCAATGgtgagttggtcttcctctgccaccctctggcaataagagactgttagcta Alignment from Exonerate_protein2genome GGGATTTCCTCATTGTTGACCCTATTGAAGAA-GGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG tgagttatgtccttcactgcctccgacgctgtcactctcttctaccccagGGGATTTCCTCATTGTTGACCCTTTTGAACGGAGGTGAAAAAGTGAAGGCGGAGATCTCTTTTGTACTCTGCAAGAACCATGTCCGCTCCCTACAGAAGGAGGGTCAATGgtgagttggtcttcctctgccaccctctggcaataagagactgttagcta Alignment from Exonerate_coding2genome GGGATTTCCTCATTGTTGACCCTATTGAAGAA-GGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG tgagttatgtccttcactgcctccgacgctgtcactctcttctaccccagGGGATTTCCTCATTGTTGACCCTTTTGAACGGAGGTGAAAAAGTGAAGGCGGAGATCTCTTTTGTACTCTGCAAGAACCATGTCCGCTCCCTACAGAAGGAGGGTCAATGgtgagttggtcttcctctgccaccctctggcaataagagactgttagcta Alignment from GeneWise GGGATTTCCTCATTGTTGACCCTATTGAA-GAAGGAGAAAAAGTGAAGGCTGAGATCTCTTTTGTGCTCTGCAAGAACCATGTCCGCTCTCTACAGAAGGAGGGTCACTG tgagttatgtccttcactgcctccgacgctgtcactctcttctaccccagGGGATTTCCTCATTGTTGACCCTTTTGAACGGAGGTGAAAAAGTGAAGGCGGAGATCTCTTTTGTACTCTGCAAGAACCATGTCCGCTCCCTACAGAAGGAGGGTCAATGgtgagttggtcttcctctgccaccctctggcaataagagactgttagcta #### Eif3a_ID13319_11 --> 0 - 0 Original Alignment GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAA-GTCATCAGACCTGCTCACATTCTG acatacagttgaaataaatccttcaataaaagattcctcttgctttacagGTACGTATAGACCATACTTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAAGGTATGCCTTCAGAACAGATAAGAAACCAGCTCACTGCCATGTCCTCAGTGCTCGCCAAAGCACTAGAACGTCATCAGACCTGCACACATTTTGgtgagggtcttgaggaggggtgatttgcacaagctttgatatggtgaggg Alignment from CESAR GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAA-GTCATCAGACCTGCTCACATTCTG acatacagttgaaataaatccttcaataaaagattcctcttgctttacagGTACGTATAGACCATACTTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAAGGTATGCCTTCAGAACAGATAAGAAACCAGCTCACTGCCATGTCCTCAGTGCTCGCCAAAGCACTAGAACGTCATCAGACCTGCACACATTTTGgtgagggtcttgaggaggggtgatttgcacaagctttgatatggtgaggg Alignment from Spaln_aa2Genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAA-GTCATCAGACCTGCTCACATTCTG acatacagttgaaataaatccttcaataaaagattcctcttgctttacagGTACGTATAGACCATACTTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAAGGTATGCCTTCAGAACAGATAAGAAACCAGCTCACTGCCATGTCCTCAGTGCTCGCCAAAGCACTAGAAcGTCATCAGACCTGCACACATTTTGgtgagggtcttgaggaggggtgatttgcacaagctttgatatggtgaggg Alignment from Spaln_nt2Genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAA-GTCATCAGACCTGCTCACATTCTG acatacagttgaaataaatccttcaataaaagattcctcttgctttacagGTACGTATAGACCATACTTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAAGGTATGCCTTCAGAACAGATAAGAAACCAGCTCACTGCCATGTCCTCAGTGCTCGCCAAAGCACTAGAACGTCATCAGACCTGCACACATTTTGgtgagggtcttgaggaggggtgatttgcacaagctttgatatggtgaggg Alignment from Pairagon GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAA-GTCATCAGACCTGCTCACATTCTG acatacagttgaaataaatccttcaataaaagattcctcttgctttacagGTACGTATAGACCATACTTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAAGGTATGCCTTCAGAACAGATAAGAAACCAGCTCACTGCCATGTCCTCAGTGCTCGCCAAAGCACTAGAACGTCATCAGACCTGCACACATTTTGgtgagggtcttgaggaggggtgatttgcacaagctttgatatggtgaggg Alignment from Exonerate_protein2genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAA-GTCATCAGACCTGCTCACATTCTG acatacagttgaaataaatccttcaataaaagattcctcttgctttacagGTACGTATAGACCATACTTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAAGGTATGCCTTCAGAACAGATAAGAAACCAGCTCACTGCCATGTCCTCAGTGCTCGCCAAAGCACTAGAACGTCATCAGACCTGCACACATTTTGgtgagggtcttgaggaggggtgatttgcacaagctttgatatggtgaggg Alignment from Exonerate_coding2genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAA-GTCATCAGACCTGCTCACATTCTG acatacagttgaaataaatccttcaataaaagattcctcttgctttacagGTACGTATAGACCATACTTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAAGGTATGCCTTCAGAACAGATAAGAAACCAGCTCACTGCCATGTCCTCAGTGCTCGCCAAAGCACTAGAACGTCATCAGACCTGCACACATTTTGgtgagggtcttgaggaggggtgatttgcacaagctttgatatggtgaggg Alignment from GeneWise GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAA-GTCATCAGACCTGCTCACATTCTG acatacagttgaaataaatccttcaataaaagattcctcttgctttacagGTACGTATAGACCATACTTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCAGTTGGCCCTCATCTGCAAGGTATGCCTTCAGAACAGATAAGAAACCAGCTCACTGCCATGTCCTCAGTGCTCGCCAAAGCACTAGAACGTCATCAGACCTGCACACATTTTGgtgagggtcttgaggaggggtgatttgcacaagctttgatatggtgaggg #### Eml3_ID2507_6 --> 2 - 2 Original Alignment aaGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACC-CTGAGCCTCGACTGGgt tgctctggggcctccaagaaggaggcttatgcgataaactactcttacagaaGGAATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGGAGTCTTGAGGAGCTGCCTAGTGGCCCGCCACCAGAGACCCCTGACCCTCGACTGGgtgcaaggtgttaagaactgtgggaatcacccgcacacacaatgggtaccct Alignment from CESAR aaGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACC-CTGAGCCTCGACTGGgt tgctctggggcctccaagaaggaggcttatgcgataaactactcttacagaaGGAATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGGAGTCTTGAGGAGCTGCCTAGTGGCCCGCCACCAGAGACCCCTGACCCTCGACTGGgtgcaaggtgttaagaactgtgggaatcacccgcacacacaatgggtaccct Alignment from Spaln_aa2Genome AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACC-CTGAGCCTCGACTGGGT tgctctggggcctccaagaaggaggcttatgcgataaactactcttacagAAGGAATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGGAGTCTTGAGGAGCTGCCTAGTGGCCCGCCACCAGAGACCcCTGACCCTCGACTGGGTgcaaggtgttaagaactgtgggaatcacccgcacacacaatgggtaccct Alignment from Spaln_nt2Genome AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCC-TGAGCCTCGACTGGGT tgctctggggcctccaagaaggaggcttatgcgataaactactcttacagAAGGAATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGGAGTCTTGAGGAGCTGCCTAGTGGCCCGCCACCAGAGACCCCTGACCCTCGACTGGGTgcaaggtgttaagaactgtgggaatcacccgcacacacaatgggtaccct Alignment from Pairagon AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGA-CCCTGAGCCTCGACTGGGT tgctctggggcctccaagaaggaggcttatgcgataaactactcttacagAAGGAATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGGAGTCTTGAGGAGCTGCCTAGTGGCCCGCCACCAGAGACCCCTGACCCTCGACTGGGTgcaaggtgttaagaactgtgggaatcacccgcacacacaatgggtaccct Alignment from Exonerate_protein2genome AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACC-CTGAGCCTCGACTGGGT tgctctggggcctccaagaaggaggcttatgcgataaactactcttacagAAGGAATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGGAGTCTTGAGGAGCTGCCTAGTGGCCCGCCACCAGAGACCCCTGACCCTCGACTGGGTgcaaggtgttaagaactgtgggaatcacccgcacacacaatgggtaccct Alignment from Exonerate_coding2genome AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACC-CTGAGCCTCGACTGGGT tgctctggggcctccaagaaggaggcttatgcgataaactactcttacagAAGGAATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGGAGTCTTGAGGAGCTGCCTAGTGGCCCGCCACCAGAGACCCCTGACCCTCGACTGGGTgcaaggtgttaagaactgtgggaatcacccgcacacacaatgggtaccct Alignment from GeneWise AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGC------CTCGACTGGGT tgctctggggcctccaagaaggaggcttatgcgataaactactcttacagAAGGAATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGGAGTCTTGAGGAGCTGCCTAGTGGCCCGCCACCAGAGACCCCTGACCCTCGACTGGGTGCAAGgtgttaagaactgtgggaatcacccgcacacacaatgggtaccct #### Eml3_ID2509_8 --> 1 - 0 Original Alignment cCTTGCTGTTCACCCTGAT-GGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG ctgtggtagttttgattgagattttctgcctgccttcctttgctttacagtCTTGCTGTTCATCCTGATCGGTGTTCATGTTGCTTCTGGACAGACAGCTGGAGTGGACAAGGATGGGAAGgtaagttcaaggaaggtactgaacagatgggatgagattatgggtcacct Alignment from CESAR cCTTGCTGTTCACCCTGAT-GGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG ctgtggtagttttgattgagattttctgcctgccttcctttgctttacagtCTTGCTGTTCATCCTGATCGGTGTTCATGTTGCTTCTGGACAGACAGCTGGAGTGGACAAGGATGGGAAGgtaagttcaaggaaggtactgaacagatgggatgagattatgggtcacct Alignment from Spaln_aa2Genome CCTTGCTGTTCACCCTGAT-GGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG ctgtggtagttttgattgagattttctgcctgccttcctttgctttacagTCTTGCTGTTCATCCTGATcGGTGTTCATGTTGCTTCTGGACAGACAGCTGGAGTGGACAAGGATGGGAAGgtaagttcaaggaaggtactgaacagatgggatgagattatgggtcacct Alignment from Spaln_nt2Genome CCTTGCTGTTCACCCTGAT-GGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG ctgtggtagttttgattgagattttctgcctgccttcctttgctttacagTCTTGCTGTTCATCCTGATCGGTGTTCATGTTGCTTCTGGACAGACAGCTGGAGTGGACAAGGATGGGAAGgtaagttcaaggaaggtactgaacagatgggatgagattatgggtcacct Alignment from Pairagon CCTTGCTGTTCACCCTGAT-GGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG ctgtggtagttttgattgagattttctgcctgccttcctttgctttacagTCTTGCTGTTCATCCTGATCGGTGTTCATGTTGCTTCTGGACAGACAGCTGGAGTGGACAAGGATGGGAAGgtaagttcaaggaaggtactgaacagatgggatgagattatgggtcacct Alignment from Exonerate_protein2genome CCTTGCTGTTCACCCTGAT-GGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG ctgtggtagttttgattgagattttctgcctgccttcctttgctttacagTCTTGCTGTTCATCCTGATCGGTGTTCATGTTGCTTCTGGACAGACAGCTGGAGTGGACAAGGATGGGAAGgtaagttcaaggaaggtactgaacagatgggatgagattatgggtcacct Alignment from Exonerate_coding2genome CCTTGCTGTTCACCCTGAT-GGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG ctgtggtagttttgattgagattttctgcctgccttcctttgctttacagTCTTGCTGTTCATCCTGATCGGTGTTCATGTTGCTTCTGGACAGACAGCTGGAGTGGACAAGGATGGGAAGgtaagttcaaggaaggtactgaacagatgggatgagattatgggtcacct Alignment from GeneWise CCTTGCTGTTCACCCTGAT-GGTGTTCGTGTAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG ctgtggtagttttgattgagattttctgcctgccttcctttgctttacagTCTTGCTGTTCATCCTGATCGGTGTTCATGTTGCTTCTGGACAGACAGCTGGAGTGGACAAGGATGGGAAGgtaagttcaaggaaggtactgaacagatgggatgagattatgggtcacct #### Eml3_ID2513_12 --> 0 - 1 Original Alignment AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAAC-ATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAg atactctaatgcacccctgcgacccatctactttcctttcccattcctagAAATACAAGAAACCCAAGTTTATCCCATGCTTTGTATTCCTTCCTGAAGGAGACATCCTAACTGGAGACTCTGAGGGGAACCATTCTTACCTGGGGTCGGAGTATCTCAGATTCTAGGACCACAGGCAGGGGTGGAGCGAAAggtaagctcaggcaggagttgggaatacttgtatctcagagattctgaagg Alignment from CESAR AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAAC-ATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAg atactctaatgcacccctgcgacccatctactttcctttcccattcctagAAATACAAGAAACCCAAGTTTATCCCATGCTTTGTATTCCTTCCTGAAGGAGACATCCTAACTGGAGACTCTGAGGGGAACCATTCTTACCTGGGGTCGGAGTATCTCAGATTCTAGGACCACAGGCAGGGGTGGAGCGAAAggtaagctcaggcaggagttgggaatacttgtatctcagagattctgaagg Alignment from Spaln_aa2Genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAAC-ATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG atactctaatgcacccctgcgacccatctactttcctttcccattcctagAAATACAAGAAACCCAAGTTTATCCCATGCTTTGTATTCCTTCCTGAAGGAGACATCCTAACTGGAGACTCTGAGGGGAACcATTCTTACCTGGGGTCGGAGTATCTCAGATTCTAGGACCACAGGCAGGGGTGGAGCGAAAGgtaagctcaggcaggagttgggaatacttgtatctcagagattctgaagg Alignment from Spaln_nt2Genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAA-CATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG atactctaatgcacccctgcgacccatctactttcctttcccattcctagAAATACAAGAAACCCAAGTTTATCCCATGCTTTGTATTCCTTCCTGAAGGAGACATCCTAACTGGAGACTCTGAGGGGAACCATTCTTACCTGGGGTCGGAGTATCTCAGATTCTAGGACCACAGGCAGGGGTGGAGCGAAAGgtaagctcaggcaggagttgggaatacttgtatctcagagattctgaagg Alignment from Pairagon AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAA-CATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG atactctaatgcacccctgcgacccatctactttcctttcccattcctagAAATACAAGAAACCCAAGTTTATCCCATGCTTTGTATTCCTTCCTGAAGGAGACATCCTAACTGGAGACTCTGAGGGGAACCATTCTTACCTGGGGTCGGAGTATCTCAGATTCTAGGACCACAGGCAGGGGTGGAGCGAAAGgtaagctcaggcaggagttgggaatacttgtatctcagagattctgaagg Alignment from Exonerate_protein2genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAAC-ATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG atactctaatgcacccctgcgacccatctactttcctttcccattcctagAAATACAAGAAACCCAAGTTTATCCCATGCTTTGTATTCCTTCCTGAAGGAGACATCCTAACTGGAGACTCTGAGGGGAACCATTCTTACCTGGGGTCGGAGTATCTCAGATTCTAGGACCACAGGCAGGGGTGGAGCGAAAGgtaagctcaggcaggagttgggaatacttgtatctcagagattctgaagg Alignment from Exonerate_coding2genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAAC-ATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG atactctaatgcacccctgcgacccatctactttcctttcccattcctagAAATACAAGAAACCCAAGTTTATCCCATGCTTTGTATTCCTTCCTGAAGGAGACATCCTAACTGGAGACTCTGAGGGGAACCATTCTTACCTGGGGTCGGAGTATCTCAGATTCTAGGACCACAGGCAGGGGTGGAGCGAAAGgtaagctcaggcaggagttgggaatacttgtatctcagagattctgaagg Alignment from GeneWise AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGATGGAGACATCCTCACTGGAGATTCCGAGGGGAAC-ATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG atactctaatgcacccctgcgacccatctactttcctttcccattcctagAAATACAAGAAACCCAAGTTTATCCCATGCTTTGTATTCCTTCCTGAAGGAGACATCCTAACTGGAGACTCTGAGGGGAACCATTCTTACCTGGGGTCGGAGTATCTCAGATTCTAGGACCACAGGCAGGGGTGGAGCGAAAGgtaagctcaggcaggagttgggaatacttgtatctcagagattctgaagg #### Eml3_ID2514_13 --> 2 - 0 Original Alignment agACCTACACGATCGTGGCCCAGGCCCATGCT-CACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gttgcccacgtctaaggtaaaggcatgcgcctccctctctccatccctagagACCTACACAATTGTGGCCCAGGCCCATGCTCCATGAGGAGTCCTTCTTTGCCCTATGTCTCCGCCAGGATGGAACAGTGCTGAGTGGTGGTGGGTGGGATCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaatggatgtgctggactctgagtctgagaagggatggggagacatatg Alignment from CESAR agACCTACACGATCGTGGCCCAGGCCCATGCT-CACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gttgcccacgtctaaggtaaaggcatgcgcctccctctctccatccctagagACCTACACAATTGTGGCCCAGGCCCATGCTCCATGAGGAGTCCTTCTTTGCCCTATGTCTCCGCCAGGATGGAACAGTGCTGAGTGGTGGTGGGTGGGATCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaatggatgtgctggactctgagtctgagaagggatggggagacatatg Alignment from Spaln_aa2Genome AGACCTACACGATCGTGGCCCAGGCCCATGCT-CACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gttgcccacgtctaaggtaaaggcatgcgcctccctctctccatccctagAGACCTACACAATTGTGGCCCAGGCCCATGCTcCATGAGGAGTCCTTCTTTGCCCTATGTCTCCGCCAGGATGGAACAGTGCTGAGTGGTGGTGGGTGGGATCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaatggatgtgctggactctgagtctgagaagggatggggagacatatg Alignment from Spaln_nt2Genome AGACCTACACGATCGTGGCCCAGGCCCATGCTC-ACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gttgcccacgtctaaggtaaaggcatgcgcctccctctctccatccctagAGACCTACACAATTGTGGCCCAGGCCCATGCTCCATGAGGAGTCCTTCTTTGCCCTATGTCTCCGCCAGGATGGAACAGTGCTGAGTGGTGGTGGGTGGGATCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaatggatgtgctggactctgagtctgagaagggatggggagacatatg Alignment from Pairagon AGACCTACACGATCGTGGCCCAGGCCCATGCT-CACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gttgcccacgtctaaggtaaaggcatgcgcctccctctctccatccctagAGACCTACACAATTGTGGCCCAGGCCCATGCTCCATGAGGAGTCCTTCTTTGCCCTATGTCTCCGCCAGGATGGAACAGTGCTGAGTGGTGGTGGGTGGGATCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaatggatgtgctggactctgagtctgagaagggatggggagacatatg Alignment from Exonerate_protein2genome AGACCTACACGATCGTGGCCCAGGCCCATGCT-CACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gttgcccacgtctaaggtaaaggcatgcgcctccctctctccatccctagAGACCTACACAATTGTGGCCCAGGCCCATGCTCCATGAGGAGTCCTTCTTTGCCCTATGTCTCCGCCAGGATGGAACAGTGCTGAGTGGTGGTGGGTGGGATCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaatggatgtgctggactctgagtctgagaagggatggggagacatatg Alignment from Exonerate_coding2genome AGACCTACACGATCGTGGCCCAGGCCCATGCT-CACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gttgcccacgtctaaggtaaaggcatgcgcctccctctctccatccctagAGACCTACACAATTGTGGCCCAGGCCCATGCTCCATGAGGAGTCCTTCTTTGCCCTATGTCTCCGCCAGGATGGAACAGTGCTGAGTGGTGGTGGGTGGGATCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaatggatgtgctggactctgagtctgagaagggatggggagacatatg Alignment from GeneWise AGACCTACACGATCGTGGCCCAGGCCCAT-GCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGACCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gttgcccacgtctaaggtaaaggcatgcgcctccctctctccatccctagAGACCTACACAATTGTGGCCCAGGCCCATGCTCCATGAGGAGTCCTTCTTTGCCCTATGTCTCCGCCAGGATGGAACAGTGCTGAGTGGTGGTGGGTGGGATCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtaatggatgtgctggactctgagtctgagaagggatggggagacatatg #### Eml3_ID2519_18 --> 2 - 0 Original Alignment atGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCC-AGCCGCTTTGGCAGATGTATG caaatatgttgcccacccatgtcataacttctgcgtggcattcactctagatGGGTTGTACCTTGCAATAGGTTCACATGACAACATGATCTACATCTACAGTGTTTCCAGTTGTGGTACTAAGTCCCAGCCGCTTTGGCAGGTGTATGgtaagcattctggctagaggatactatttgtctaactttggccacagtaa Alignment from CESAR atGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCC-AGCCGCTTTGGCAGATGTATG caaatatgttgcccacccatgtcataacttctgcgtggcattcactctagatGGGTTGTACCTTGCAATAGGTTCACATGACAACATGATCTACATCTACAGTGTTTCCAGTTGTGGTACTAAGTCCCAGCCGCTTTGGCAGGTGTATGgtaagcattctggctagaggatactatttgtctaactttggccacagtaa Alignment from Spaln_aa2Genome ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCC-AGCCGCTTTGGCAGATGTATG caaatatgttgcccacccatgtcataacttctgcgtggcattcactctagATGGGTTGTACCTTGCAATAGGTTCACATGACAACATGATCTACATCTACAGTGTTTCCAGTTGTGGTACTAAGTCCcAGCCGCTTTGGCAGGTGTATGgtaagcattctggctagaggatactatttgtctaactttggccacagtaa Alignment from Spaln_nt2Genome ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCC-AGCCGCTTTGGCAGATGTATG caaatatgttgcccacccatgtcataacttctgcgtggcattcactctagATGGGTTGTACCTTGCAATAGGTTCACATGACAACATGATCTACATCTACAGTGTTTCCAGTTGTGGTACTAAGTCCCAGCCGCTTTGGCAGGTGTATGgtaagcattctggctagaggatactatttgtctaactttggccacagtaa Alignment from Pairagon ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGT-CCAGCCGCTTTGGCAGATGTATG caaatatgttgcccacccatgtcataacttctgcgtggcattcactctagATGGGTTGTACCTTGCAATAGGTTCACATGACAACATGATCTACATCTACAGTGTTTCCAGTTGTGGTACTAAGTCCCAGCCGCTTTGGCAGGTGTATGgtaagcattctggctagaggatactatttgtctaactttggccacagtaa Alignment from Exonerate_protein2genome ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCC-AGCCGCTTTGGCAGATGTATG caaatatgttgcccacccatgtcataacttctgcgtggcattcactctagATGGGTTGTACCTTGCAATAGGTTCACATGACAACATGATCTACATCTACAGTGTTTCCAGTTGTGGTACTAAGTCCCAGCCGCTTTGGCAGGTGTATGgtaagcattctggctagaggatactatttgtctaactttggccacagtaa Alignment from Exonerate_coding2genome ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCC-AGCCGCTTTGGCAGATGTATG caaatatgttgcccacccatgtcataacttctgcgtggcattcactctagATGGGTTGTACCTTGCAATAGGTTCACATGACAACATGATCTACATCTACAGTGTTTCCAGTTGTGGTACTAAGTCCCAGCCGCTTTGGCAGGTGTATGgtaagcattctggctagaggatactatttgtctaactttggccacagtaa Alignment from GeneWise ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAG-TCCAGCCGCTTTGGCAGATGTATG caaatatgttgcccacccatgtcataacttctgcgtggcattcactctagATGGGTTGTACCTTGCAATAGGTTCACATGACAACATGATCTACATCTACAGTGTTTCCAGTTGTGGTACTAAGTCCCAGCCGCTTTGGCAGGTGTATGgtaagcattctggctagaggatactatttgtctaactttggccacagtaa #### Fads1_ID2689_3 --> 0 - 0 Original Alignment AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTC-ATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG ttccagagctatagatgtgagtgggagattctctcatctctctgctatagAAAGTGCTGTCTGATGAATTTCGGGAACTGCGGGCCACAGTGGAGCGAATAGGCCTCCATGAAAGCTAACCATCTCTTCCTCTTGGTCTACCTACTTCGCATTCCACTGCTGGATGTGGCTGCCTGGCTCACACTGTGGATCTTTGGAACTTCCTTGGTGCCC---ATACTTTGTGCAGTACTACTCAGTACAGTTCAGgtggggtttacctgtttattctcagaattcttagtataaacatcaaggcc Alignment from CESAR AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTC-ATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG ttccagagctatagatgtgagtgggagattctctcatctctctgctatagAAAGTGCTGTCTGATGAATTTCGGGAACTGCGGGCCACAGTGGAGCGAATAGGCCTCCATGAAAGCTAACCATCTCTTCCTCTTGGTCTACCTACTTCGCATTCCACTGCTGGATGTGGCTGCCTGGCTCACACTGTGGATCTTTGGAACTTCCTTGGTGCCC---ATACTTTGTGCAGTACTACTCAGTACAGTTCAGgtggggtttacctgtttattctcagaattcttagtataaacatcaaggcc Alignment from Spaln_aa2Genome AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTC-ATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG ttccagagctatagatgtgagtgggagattctctcatctctctgctatagAAAGTGCTGTCTGATGAATTTCGGGAACTGCGGGCCACAGTGGAGCGAATAGGCCTCcATGAAAGCTAACCATCTCTTCCTCTTGGTCTACCTACTTCGCATTCCACTGCTGGATGTGGCTGCCTGGCTCACACTGTGGATCTTTGGAACTTCCTTGGTGCCC---ATACTTTGTGCAGTACTACTCAGTACAGTTCAGgtggggtttacctgtttattctcagaattcttagtataaacatcaaggcc Alignment from Spaln_nt2Genome AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTC-ATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG ttccagagctatagatgtgagtgggagattctctcatctctctgctatagAAAGTGCTGTCTGATGAATTTCGGGAACTGCGGGCCACAGTGGAGCGAATAGGCCTCCATGAAAGCTAACCATCTCTTCCTCTTGGTCTACCTACTTCGCATTCCACTGCTGGATGTGGCTGCCTGGCTCACACTGTGGATCTTTGGAACTTCCTTGGTGCC---CATACTTTGTGCAGTACTACTCAGTACAGTTCAGgtggggtttacctgtttattctcagaattcttagtataaacatcaaggcc Alignment from Pairagon AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCT-CATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG ttccagagctatagatgtgagtgggagattctctcatctctctgctatagAAAGTGCTGTCTGATGAATTTCGGGAACTGCGGGCCACAGTGGAGCGAATAGGCCTCCATGAAAGCTAACCATCTCTTCCTCTTGGTCTACCTACTTCGCATTCCACTGCTGGATGTGGCTGCCTGGCTCACACTGTGGATCTTTGGAACTTCCTTGGTGCC---CATACTTTGTGCAGTACTACTCAGTACAGTTCAGgtggggtttacctgtttattctcagaattcttagtataaacatcaaggcc Alignment from Exonerate_protein2genome AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTC-ATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG ttccagagctatagatgtgagtgggagattctctcatctctctgctatagAAAGTGCTGTCTGATGAATTTCGGGAACTGCGGGCCACAGTGGAGCGAATAGGCCTCCATGAAAGCTAACCATCTCTTCCTCTTGGTCTACCTACTTCGCATTCCACTGCTGGATGTGGCTGCCTGGCTCACACTGTGGATCTTTGGAACTTCCTTGGTGCCC---ATACTTTGTGCAGTACTACTCAGTACAGTTCAGgtggggtttacctgtttattctcagaattcttagtataaacatcaaggcc Alignment from Exonerate_coding2genome AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTC-ATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG ttccagagctatagatgtgagtgggagattctctcatctctctgctatagAAAGTGCTGTCTGATGAATTTCGGGAACTGCGGGCCACAGTGGAGCGAATAGGCCTCCATGAAAGCTAACCATCTCTTCCTCTTGGTCTACCTACTTCGCATTCCACTGCTGGATGTGGCTGCCTGGCTCACACTGTGGATCTTTGGAACTTCCTTGGTGCCC---ATACTTTGTGCAGTACTACTCAGTACAGTTCAGgtggggtttacctgtttattctcagaattcttagtataaacatcaaggcc Alignment from GeneWise AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGC-CTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG ttccagagctatagatgtgagtgggagattctctcatctctctgctatagAAAGTGCTGTCTGATGAATTTCGGGAACTGCGGGCCACAGTGGAGCGAATAGGCCTCCATGAAAGCTAACCATCTCTTCCTCTTGGTCTACCTACTTCGCATTCCACTGCTGGATGTGGCTGCCTGGCTCACACTGTGGATCTTTGGAACTTCCTTGGTGCCC---ATACTTTGTGCAGTACTACTCAGTACAGTTCAGgtggggtttacctgtttattctcagaattcttagtataaacatcaaggcc #### Fads1_ID2695_9 --> 1 - 0 Original Alignment gTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATG-AACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG acctcttatgatcagctctacctcttatttaaaaaatatatatcttataggTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGCAACCATATCTCCATGCACATTGACCCAGACCGAAATGTGGACTGGGTCTCCACCCAGgtctgttacagtctttaaagcccgcccttggcactgaagagtttagatga Alignment from CESAR gTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATG-AACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG acctcttatgatcagctctacctcttatttaaaaaatatatatcttataggTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGCAACCATATCTCCATGCACATTGACCCAGACCGAAATGTGGACTGGGTCTCCACCCAGgtctgttacagtctttaaagcccgcccttggcactgaagagtttagatga Alignment from Spaln_aa2Genome GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATG-AACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG acctcttatgatcagctctacctcttatttaaaaaatatatatcttatagGTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGcAACCATATCTCCATGCACATTGACCCAGACCGAAATGTGGACTGGGTCTCCACCCAGgtctgttacagtctttaaagcccgcccttggcactgaagagtttagatga Alignment from Spaln_nt2Genome GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATG-AACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG acctcttatgatcagctctacctcttatttaaaaaatatatatcttatagGTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGCAACCATATCTCCATGCACATTGACCCAGACCGAAATGTGGACTGGGTCTCCACCCAGgtctgttacagtctttaaagcccgcccttggcactgaagagtttagatga Alignment from Pairagon GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATG-AACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG acctcttatgatcagctctacctcttatttaaaaaatatatatcttatagGTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGCAACCATATCTCCATGCACATTGACCCAGACCGAAATGTGGACTGGGTCTCCACCCAGgtctgttacagtctttaaagcccgcccttggcactgaagagtttagatga Alignment from Exonerate_protein2genome GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATG-AACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG acctcttatgatcagctctacctcttatttaaaaaatatatatcttatagGTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGCAACCATATCTCCATGCACATTGACCCAGACCGAAATGTGGACTGGGTCTCCACCCAGgtctgttacagtctttaaagcccgcccttggcactgaagagtttagatga Alignment from Exonerate_coding2genome GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATG-AACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG acctcttatgatcagctctacctcttatttaaaaaatatatatcttatagGTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGCAACCATATCTCCATGCACATTGACCCAGACCGAAATGTGGACTGGGTCTCCACCCAGgtctgttacagtctttaaagcccgcccttggcactgaagagtttagatga Alignment from GeneWise GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAG-ATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG acctcttatgatcagctctacctcttatttaaaaaatatatatcttatagGTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGCAACCATATCTCCATGCACATTGACCCAGACCGAAATGTGGACTGGGTCTCCACCCAGgtctgttacagtctttaaagcccgcccttggcactgaagagtttagatga #### Fads3_ID2661_4 --> 0 - 0 Original Alignment GCCCAGTGCTGGTGTCTGCAA-CATGATCTAGGTCATGCTTCCATCTTCACTAAGTCCAGGTGGAACCATGTGGCCCAGCAGTTCGTGATGGGGCAGTTGAAA gactgacttctgcctccacacttaagcttctgggattttatatttttcagGCTCAATGCTGGTGTCTGCAACCATGATCTAGGTCATGCTTCCACCTTCACTAAATCTAGGTGGAACCATGTGTCCGAGCAGTTCGTGATGGGGCAGTTGAAAgtatgtgtggaggacaggatctgtgctgggtccgttccagtgtgtggcta Alignment from CESAR GCCCAGTGCTGGTGTCTGCAA-CATGATCTAGGTCATGCTTCCATCTTCACTAAGTCCAGGTGGAACCATGTGGCCCAGCAGTTCGTGATGGGGCAGTTGAAA gactgacttctgcctccacacttaagcttctgggattttatatttttcagGCTCAATGCTGGTGTCTGCAACCATGATCTAGGTCATGCTTCCACCTTCACTAAATCTAGGTGGAACCATGTGTCCGAGCAGTTCGTGATGGGGCAGTTGAAAgtatgtgtggaggacaggatctgtgctgggtccgttccagtgtgtggcta Alignment from Spaln_aa2Genome GCCCAGTGCTGGTGTCTGCAA-CATGATCTAGGTCATGCTTCCATCTTCACTAAGTCCAGGTGGAACCATGTGGCCCAGCAGTTCGTGATGGGGCAGTTGAAA gactgacttctgcctccacacttaagcttctgggattttatatttttcagGCTCAATGCTGGTGTCTGCAAcCATGATCTAGGTCATGCTTCCACCTTCACTAAATCTAGGTGGAACCATGTGTCCGAGCAGTTCGTGATGGGGCAGTTGAAAgtatgtgtggaggacaggatctgtgctgggtccgttccagtgtgtggcta Alignment from Spaln_nt2Genome GCCCAGTGCTGGTGTCTGCAA-CATGATCTAGGTCATGCTTCCATCTTCACTAAGTCCAGGTGGAACCATGTGGCCCAGCAGTTCGTGATGGGGCAGTTGAAA gactgacttctgcctccacacttaagcttctgggattttatatttttcagGCTCAATGCTGGTGTCTGCAACCATGATCTAGGTCATGCTTCCACCTTCACTAAATCTAGGTGGAACCATGTGTCCGAGCAGTTCGTGATGGGGCAGTTGAAAgtatgtgtggaggacaggatctgtgctgggtccgttccagtgtgtggcta Alignment from Pairagon GCCCAGTGCTGGTGTCTGCAA-CATGATCTAGGTCATGCTTCCATCTTCACTAAGTCCAGGTGGAACCATGTGGCCCAGCAGTTCGTGATGGGGCAGTTGAAA gactgacttctgcctccacacttaagcttctgggattttatatttttcagGCTCAATGCTGGTGTCTGCAACCATGATCTAGGTCATGCTTCCACCTTCACTAAATCTAGGTGGAACCATGTGTCCGAGCAGTTCGTGATGGGGCAGTTGAAAgtatgtgtggaggacaggatctgtgctgggtccgttccagtgtgtggcta Alignment from Exonerate_protein2genome GCCCAGTGCTGGTGTCTGCAA-CATGATCTAGGTCATGCTTCCATCTTCACTAAGTCCAGGTGGAACCATGTGGCCCAGCAGTTCGTGATGGGGCAGTTGAAA gactgacttctgcctccacacttaagcttctgggattttatatttttcagGCTCAATGCTGGTGTCTGCAACCATGATCTAGGTCATGCTTCCACCTTCACTAAATCTAGGTGGAACCATGTGTCCGAGCAGTTCGTGATGGGGCAGTTGAAAgtatgtgtggaggacaggatctgtgctgggtccgttccagtgtgtggcta Alignment from Exonerate_coding2genome GCCCAGTGCTGGTGTCTGCAA-CATGATCTAGGTCATGCTTCCATCTTCACTAAGTCCAGGTGGAACCATGTGGCCCAGCAGTTCGTGATGGGGCAGTTGAAA gactgacttctgcctccacacttaagcttctgggattttatatttttcagGCTCAATGCTGGTGTCTGCAACCATGATCTAGGTCATGCTTCCACCTTCACTAAATCTAGGTGGAACCATGTGTCCGAGCAGTTCGTGATGGGGCAGTTGAAAgtatgtgtggaggacaggatctgtgctgggtccgttccagtgtgtggcta Alignment from GeneWise GCCCAGTGCTGGTGTCTG-CAACATGATCTAGGTCATGCTTCCATCTTCACTAAGTCCAGGTGGAACCATGTGGCCCAGCAGTTCGTGATGGGGCAGTTGAAA gactgacttctgcctccacacttaagcttctgggattttatatttttcagGCTCAATGCTGGTGTCTGCAACCATGATCTAGGTCATGCTTCCACCTTCACTAAATCTAGGTGGAACCATGTGTCCGAGCAGTTCGTGATGGGGCAGTTGAAAgtatgtgtggaggacaggatctgtgctgggtccgttccagtgtgtggcta #### Fads3_ID2662_5 --> 0 - 0 Original Alignment GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCA-CCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaggctggagcacagcacaactcggcccccttccccactgggcctccagGACTTTTCTGCCCACTGGTGGAATTTCCGCCACTTCAAGCACCATGCCAAACCCAACATATTCCACAAAGACCCTGATGTGACTGTTGCACCCTGTCTTCCTTCTTGGGGAGTCATCTGTAGAGgtcagtaggagtttcgtcccccacagctcaggaggcccactggagactga Alignment from CESAR GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCA-CCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaggctggagcacagcacaactcggcccccttccccactgggcctccagGACTTTTCTGCCCACTGGTGGAATTTCCGCCACTTCAAGCACCATGCCAAACCCAACATATTCCACAAAGACCCTGATGTGACTGTTGCACCCTGTCTTCCTTCTTGGGGAGTCATCTGTAGAGgtcagtaggagtttcgtcccccacagctcaggaggcccactggagactga Alignment from Spaln_aa2Genome GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCACCT-GTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaggctggagcacagcacaactcggcccccttccccactgggcctccagGACTTTTCTGCCCACTGGTGGAATTTCCGCCACTTCAAGCACCATGCCAAACCCAACATATTCCACAAAGACCCTGATGTGACTGTTGCACCCtGTCTTCCTTCTTGGGGAGTCATCTGTAGAGgtcagtaggagtttcgtcccccacagctcaggaggcccactggagactga Alignment from Spaln_nt2Genome GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCAC-CTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaggctggagcacagcacaactcggcccccttccccactgggcctccagGACTTTTCTGCCCACTGGTGGAATTTCCGCCACTTCAAGCACCATGCCAAACCCAACATATTCCACAAAGACCCTGATGTGACTGTTGCACCCTGTCTTCCTTCTTGGGGAGTCATCTGTAGAGgtcagtaggagtttcgtcccccacagctcaggaggcccactggagactga Alignment from Pairagon GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCA-CCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaggctggagcacagcacaactcggcccccttccccactgggcctccagGACTTTTCTGCCCACTGGTGGAATTTCCGCCACTTCAAGCACCATGCCAAACCCAACATATTCCACAAAGACCCTGATGTGACTGTTGCACCCTGTCTTCCTTCTTGGGGAGTCATCTGTAGAGgtcagtaggagtttcgtcccccacagctcaggaggcccactggagactga Alignment from Exonerate_protein2genome GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCA-CCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaggctggagcacagcacaactcggcccccttccccactgggcctccagGACTTTTCTGCCCACTGGTGGAATTTCCGCCACTTCAAGCACCATGCCAAACCCAACATATTCCACAAAGACCCTGATGTGACTGTTGCACCCTGTCTTCCTTCTTGGGGAGTCATCTGTAGAGgtcagtaggagtttcgtcccccacagctcaggaggcccactggagactga Alignment from Exonerate_coding2genome GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTCGCA-CCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaggctggagcacagcacaactcggcccccttccccactgggcctccagGACTTTTCTGCCCACTGGTGGAATTTCCGCCACTTCAAGCACCATGCCAAACCCAACATATTCCACAAAGACCCTGATGTGACTGTTGCACCCTGTCTTCCTTCTTGGGGAGTCATCTGTAGAGgtcagtaggagtttcgtcccccacagctcaggaggcccactggagactga Alignment from GeneWise GGCTTTTCCGCCCACTGGTGGAATTTCCGCCACTTCCAGCACCATGCCAAACCCAACATCTTCCACAAAGACCCAGATGTGACTGTC-GCACCTGTCTTCCTCCTGGGGGAGTCATCTGTGGAG ccaggctggagcacagcacaactcggcccccttccccactgggcctccagGACTTTTCTGCCCACTGGTGGAATTTCCGCCACTTCAAGCACCATGCCAAACCCAACATATTCCACAAAGACCCTGATGTGACTGTTGCACCCTGTCTTCCTTCTTGGGGAGTCATCTGTAGAGgtcagtaggagtttcgtcccccacagctcaggaggcccactggagactga #### Fads3_ID2663_6 --> 0 - 1 Original Alignment TATGGCAAGAAGAAACGCAGATACCTGCCCTACAACCACCAGCAT-CTATACTTCTTCCTGa tctgagcccagagagctgttctccctgggtctgaattatttttttttcagTATGGCAAGAAGAAACGAAGATACCTGCCCTACAATCACCAGCATCCTATACTTCTTCCTGagtaagcggtaccaacaagcctttgtgggtgggaatctagtggagctagca Alignment from CESAR TATGGCAAGAAGAAACGCAGATACCTGCCCTACAACCACCAGCAT-CTATACTTCTTCCTGa tctgagcccagagagctgttctccctgggtctgaattatttttttttcagTATGGCAAGAAGAAACGAAGATACCTGCCCTACAATCACCAGCATCCTATACTTCTTCCTGagtaagcggtaccaacaagcctttgtgggtgggaatctagtggagctagca Alignment from Spaln_aa2Genome TATGGCAAGAAGAAACGCAGATACCTGCCCTACAACCACCAGCAT-CTATACTTCTTCCTGA tctgagcccagagagctgttctccctgggtctgaattatttttttttcagTATGGCAAGAAGAAACGAAGATACCTGCCCTACAATCACCAGCATcCTATACTTCTTCCTGAgtaagcggtaccaacaagcctttgtgggtgggaatctagtggagctagca Alignment from Spaln_nt2Genome TATGGCAAGAAGAAACGCAGATACCTGCCCTACAACCACCAGCAT-CTATACTTCTTCCTGA tctgagcccagagagctgttctccctgggtctgaattatttttttttcagTATGGCAAGAAGAAACGAAGATACCTGCCCTACAATCACCAGCATCCTATACTTCTTCCTGAgtaagcggtaccaacaagcctttgtgggtgggaatctagtggagctagca Alignment from Pairagon TATGGCAAGAAGAAACGCAGATACCTGCCCTACAACCACCAGCAT-CTATACTTCTTCCTGA tctgagcccagagagctgttctccctgggtctgaattatttttttttcagTATGGCAAGAAGAAACGAAGATACCTGCCCTACAATCACCAGCATCCTATACTTCTTCCTGAgtaagcggtaccaacaagcctttgtgggtgggaatctagtggagctagca Alignment from Exonerate_protein2genome TATGGCAAGAAGAAACGCAGATACCTGCCCTACAACCACCAGCAT-CTATACTTCTTCCTGA tctgagcccagagagctgttctccctgggtctgaattatttttttttcagTATGGCAAGAAGAAACGAAGATACCTGCCCTACAATCACCAGCATCCTATACTTCTTCCTGAgtaagcggtaccaacaagcctttgtgggtgggaatctagtggagctagca Alignment from Exonerate_coding2genome TATGGCAAGAAGAAACGCAGATACCTGCCCTACAACCACCAGCAT-CTATACTTCTTCCTGA tctgagcccagagagctgttctccctgggtctgaattatttttttttcagTATGGCAAGAAGAAACGAAGATACCTGCCCTACAATCACCAGCATCCTATACTTCTTCCTGAgtaagcggtaccaacaagcctttgtgggtgggaatctagtggagctagca Alignment from GeneWise TATGGCAAGAAGAAACGCAGATACCTGCCCTACAACCACCAGCAT-CTATACTTCTTCCTGA tctgagcccagagagctgttctccctgggtctgaattatttttttttcagTATGGCAAGAAGAAACGAAGATACCTGCCCTACAATCACCAGCATCCTATACTTCTTCCTGAgtaagcggtaccaacaagcctttgtgggtgggaatctagtggagctagca #### Fads3_ID2665_8 --> 0 - 2 Original Alignment GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTG-TCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCag cctgccccccaggtccccagctcagggaattactgtgttttatttgtaagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTCTTGCTCCTACTCACCCTTCTATGGGGCCACTGGGACGCTACTTCTCTTTGTTGCTGTCaggtgagtccaaattcatagtgattgggaattgaaaggcctcaccaacatgc Alignment from CESAR GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTG-TCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCag cctgccccccaggtccccagctcagggaattactgtgttttatttgtaagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTCTTGCTCCTACTCACCCTTCTATGGGGCCACTGGGACGCTACTTCTCTTTGTTGCTGTCaggtgagtccaaattcatagtgattgggaattgaaaggcctcaccaacatgc Alignment from Spaln_aa2Genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTG-TCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgccccccaggtccccagctcagggaattactgtgttttatttgtaagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTCTTGcTCCTACTCACCCTTCTATGGGGCCACTGGGACGCTACTTCTCTTTGTTGCTGTCAGgtgagtccaaattcatagtgattgggaattgaaaggcctcaccaacatgc Alignment from Spaln_nt2Genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTG-TCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgccccccaggtccccagctcagggaattactgtgttttatttgtaagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTCTTGCTCCTACTCACCCTTCTATGGGGCCACTGGGACGCTACTTCTCTTTGTTGCTGTCAGgtgagtccaaattcatagtgattgggaattgaaaggcctcaccaacatgc Alignment from Pairagon GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTG-TCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgccccccaggtccccagctcagggaattactgtgttttatttgtaagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTCTTGCTCCTACTCACCCTTCTATGGGGCCACTGGGACGCTACTTCTCTTTGTTGCTGTCAGgtgagtccaaattcatagtgattgggaattgaaaggcctcaccaacatgc Alignment from Exonerate_protein2genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTG-TCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgccccccaggtccccagctcagggaattactgtgttttatttgtaagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTCTTGCTCCTACTCACCCTTCTATGGGGCCACTGGGACGCTACTTCTCTTTGTTGCTGTCAGgtgagtccaaattcatagtgattgggaattgaaaggcctcaccaacatgc Alignment from Exonerate_coding2genome GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTG-TCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgccccccaggtccccagctcagggaattactgtgttttatttgtaagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTCTTGCTCCTACTCACCCTTCTATGGGGCCACTGGGACGCTACTTCTCTTTGTTGCTGTCAGgtgagtccaaattcatagtgattgggaattgaaaggcctcaccaacatgc Alignment from GeneWise GACTTGCTGTGGGCTGCCAGTTTCTACTCCCGCTTTTTCTTG-TCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG cctgccccccaggtccccagctcagggaattactgtgttttatttgtaagGACTTACTGTGGGCTGCCAGTTTCTACACCCACTTTTTCTTGCTCCTACTCACCCTTCTATGGGGCCACTGGGACGCTACTTCTCTTTGTTGCTGTCAGgtgagtccaaattcatagtgattgggaattgaaaggcctcaccaacatgc #### Fam160b1_ID12353_4 --> 0 - 0 Original Alignment TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAAC-GTACACAGGCCTGTGCAG gtcccactgcagacctttgactatgttcggggtctgcgttgtccttgcagTGCCCTCCAGGAATGAAACGGCAGGTTTTAGTACTTTATACCAAGCTTCTTGAACGAATCCAGCAACCACTACTCCCACATGTCAATCGTGCACAGGCCGGTGCAGgtaagtattctccctaagaataaacatagtggagaaaaatatcataacat Alignment from CESAR TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAAC-GTACACAGGCCTGTGCAG gtcccactgcagacctttgactatgttcggggtctgcgttgtccttgcagTGCCCTCCAGGAATGAAACGGCAGGTTTTAGTACTTTATACCAAGCTTCTTGAACGAATCCAGCAACCACTACTCCCACATGTCAATCGTGCACAGGCCGGTGCAGgtaagtattctccctaagaataaacatagtggagaaaaatatcataacat Alignment from Spaln_aa2Genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAAC-GTACACAGGCCTGTGCAG gtcccactgcagacctttgactatgttcggggtctgcgttgtccttgcagTGCCCTCCAGGAATGAAACGGCAGGTTTTAGTACTTTATACCAAGCTTCTTGAACGAATCCAGCAACCACTACTCCCACATGTCAATcGTGCACAGGCCGGTGCAGgtaagtattctccctaagaataaacatagtggagaaaaatatcataacat Alignment from Spaln_nt2Genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAA-CGTACACAGGCCTGTGCAG gtcccactgcagacctttgactatgttcggggtctgcgttgtccttgcagTGCCCTCCAGGAATGAAACGGCAGGTTTTAGTACTTTATACCAAGCTTCTTGAACGAATCCAGCAACCACTACTCCCACATGTCAATCGTGCACAGGCCGGTGCAGgtaagtattctccctaagaataaacatagtggagaaaaatatcataacat Alignment from Pairagon TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAA-CGTACACAGGCCTGTGCAG gtcccactgcagacctttgactatgttcggggtctgcgttgtccttgcagTGCCCTCCAGGAATGAAACGGCAGGTTTTAGTACTTTATACCAAGCTTCTTGAACGAATCCAGCAACCACTACTCCCACATGTCAATCGTGCACAGGCCGGTGCAGgtaagtattctccctaagaataaacatagtggagaaaaatatcataacat Alignment from Exonerate_protein2genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAAC-GTACACAGGCCTGTGCAG gtcccactgcagacctttgactatgttcggggtctgcgttgtccttgcagTGCCCTCCAGGAATGAAACGGCAGGTTTTAGTACTTTATACCAAGCTTCTTGAACGAATCCAGCAACCACTACTCCCACATGTCAATCGTGCACAGGCCGGTGCAGgtaagtattctccctaagaataaacatagtggagaaaaatatcataacat Alignment from Exonerate_coding2genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAAC-GTACACAGGCCTGTGCAG gtcccactgcagacctttgactatgttcggggtctgcgttgtccttgcagTGCCCTCCAGGAATGAAACGGCAGGTTTTAGTACTTTATACCAAGCTTCTTGAACGAATCCAGCAACCACTACTCCCACATGTCAATCGTGCACAGGCCGGTGCAGgtaagtattctccctaagaataaacatagtggagaaaaatatcataacat Alignment from GeneWise TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAAC-GTACACAGGCCTGTGCAG gtcccactgcagacctttgactatgttcggggtctgcgttgtccttgcagTGCCCTCCAGGAATGAAACGGCAGGTTTTAGTACTTTATACCAAGCTTCTTGAACGAATCCAGCAACCACTACTCCCACATGTCAATCGTGCACAGGCCGGTGCAGgtaagtattctccctaagaataaacatagtggagaaaaatatcataacat #### Fam160b1_ID12360_11 --> 0 - 2 Original Alignment ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATC-CTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCgt ggtgtgcctgactggaaaattcccctcattgctctgtgtcctttccacagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCCTCTACAACCTGGTCTTGAGAAACCTGGAGGAGAGAAACTATACGGAGAACAAACCTTCCTGCCCAGAAGACAAGGATGTGGTGGAGAATGGGCTGATAGCAGGTGCTgtgtgggggcccactctgtaagtggcatctccccagtcaggagttggtgtga Alignment from CESAR ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATC-CTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCgt ggtgtgcctgactggaaaattcccctcattgctctgtgtcctttccacagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCCTCTACAACCTGGTCTTGAGAAACCTGGAGGAGAGAAACTATACGGAGAACAAACCTTCCTGCCCAGAAGACAAGGATGTGGTGGAGAATGGGCTGATAGCAGGTGCTgtgtgggggcccactctgtaagtggcatctccccagtcaggagttggtgtga Alignment from Spaln_aa2Genome ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATC-CTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT ggtgtgcctgactggaaaattcccctcattgctctgtgtcctttccacagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCcCTCTACAACCTGGTCTTGAGAAACCTGGAGGAGAGAAACTATACGGAGAACAAACCTTCCTGCCCAGAAGACAAGGATGTGGTGGAGAATGGGCTGATAGCAGGTGCTGTgtgggggcccactctgtaagtggcatctccccagtcaggagttggtgtga Alignment from Spaln_nt2Genome ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACAT-CCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT ggtgtgcctgactggaaaattcccctcattgctctgtgtcctttccacagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCCTCTACAACCTGGTCTTGAGAAACCTGGAGGAGAGAAACTATACGGAGAACAAACCTTCCTGCCCAGAAGACAAGGATGTGGTGGAGAATGGGCTGATAGCAGGTGCTGTgtgggggcccactctgtaagtggcatctccccagtcaggagttggtgtga Alignment from Pairagon ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACAT-CCTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT ggtgtgcctgactggaaaattcccctcattgctctgtgtcctttccacagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCCTCTACAACCTGGTCTTGAGAAACCTGGAGGAGAGAAACTATACGGAGAACAAACCTTCCTGCCCAGAAGACAAGGATGTGGTGGAGAATGGGCTGATAGCAGGTGCTGTgtgggggcccactctgtaagtggcatctccccagtcaggagttggtgtga Alignment from Exonerate_protein2genome ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATC-CTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT ggtgtgcctgactggaaaattcccctcattgctctgtgtcctttccacagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCCTCTACAACCTGGTCTTGAGAAACCTGGAGGAGAGAAACTATACGGAGAACAAACCTTCCTGCCCAGAAGACAAGGATGTGGTGGAGAATGGGCTGATAGCAGGTGCTGTgtgggggcccactctgtaagtggcatctccccagtcaggagttggtgtga Alignment from Exonerate_coding2genome ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATC-CTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT ggtgtgcctgactggaaaattcccctcattgctctgtgtcctttccacagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCCTCTACAACCTGGTCTTGAGAAACCTGGAGGAGAGAAACTATACGGAGAACAAACCTTCCTGCCCAGAAGACAAGGATGTGGTGGAGAATGGGCTGATAGCAGGTGCTGTgtgggggcccactctgtaagtggcatctccccagtcaggagttggtgtga Alignment from GeneWise ATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATC-CTCTACAACCTGGTCTTGAGAAACCTGGAAGAAAGAAACTATACGGAGAACAAACCTTCCTGCCCGGAAGACAAGGACGTGGTGGAGAACGGGCTGATAGCAGGCGCCGT ggtgtgcctgactggaaaattcccctcattgctctgtgtcctttccacagATCAGCATCATGACCCTGAGGATGTTTGAGCATCTCCTACAAAAGCCCAATGAACACATCCCTCTACAACCTGGTCTTGAGAAACCTGGAGGAGAGAAACTATACGGAGAACAAACCTTCCTGCCCAGAAGACAAGGATGTGGTGGAGAATGGGCTGATAGCAGGTGCTGTgtgggggcccactctgtaagtggcatctccccagtcaggagttggtgtga #### Fau_ID1402_2 --> 0 - 1 Original Alignment GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGC-TCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAg cacaggaagactttgtgtatgtgtagactttcttctcatttgacatgcagGATCATGTGGCCTCCCTAGAAGGCATGGCCCCTGAAGATCAGGCTGTGCTTCTTGCAGGCCTCCCCACTGGAAGATGACGCCACCCTGGGCCAGTGTGGCGTAGAGGCCCCAACCACTCTGGAGGTAGCAGGCCGCATGCTTGGCggtcagtggtgggaggttagttcagtgctttttttcatagctaagttaaga Alignment from CESAR GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGC-TCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAg cacaggaagactttgtgtatgtgtagactttcttctcatttgacatgcagGATCATGTGGCCTCCCTAGAAGGCATGGCCCCTGAAGATCAGGCTGTGCTTCTTGCAGGCCTCCCCACTGGAAGATGACGCCACCCTGGGCCAGTGTGGCGTAGAGGCCCCAACCACTCTGGAGGTAGCAGGCCGCATGCTTGGCggtcagtggtgggaggttagttcagtgctttttttcatagctaagttaaga Alignment from Spaln_aa2Genome GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCCG-CTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacaggaagactttgtgtatgtgtagactttcttctcatttgacatgcagGATCATGTGGCCTCCCTAGAAGGCATGGCCCCTGAAGATCAGGCTGTGCTTCTTGCAGGCCTCCCCaCTGGAAGATGACGCCACCCTGGGCCAGTGTGGCGTAGAGGCCCCAACCACTCTGGAGGTAGCAGGCCGCATGCTTGGCGgtcagtggtgggaggttagttcagtgctttttttcatagctaagttaaga Alignment from Spaln_nt2Genome GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGC-TCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacaggaagactttgtgtatgtgtagactttcttctcatttgacatgcagGATCATGTGGCCTCCCTAGAAGGCATGGCCCCTGAAGATCAGGCTGTGCTTCTTGCAGGCCTCCCCACTGGAAGATGACGCCACCCTGGGCCAGTGTGGCGTAGAGGCCCCAACCACTCTGGAGGTAGCAGGCCGCATGCTTGGCGgtcagtggtgggaggttagttcagtgctttttttcatagctaagttaaga Alignment from Pairagon GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGG-CTCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacaggaagactttgtgtatgtgtagactttcttctcatttgacatgcagGATCATGTGGCCTCCCTAGAAGGCATGGCCCCTGAAGATCAGGCTGTGCTTCTTGCAGGCCTCCCCACTGGAAGATGACGCCACCCTGGGCCAGTGTGGCGTAGAGGCCCCAACCACTCTGGAGGTAGCAGGCCGCATGCTTGGCGgtcagtggtgggaggttagttcagtgctttttttcatagctaagttaaga Alignment from Exonerate_protein2genome GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGC-TCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacaggaagactttgtgtatgtgtagactttcttctcatttgacatgcagGATCATGTGGCCTCCCTAGAAGGCATGGCCCCTGAAGATCAGGCTGTGCTTCTTGCAGGCCTCCCCACTGGAAGATGACGCCACCCTGGGCCAGTGTGGCGTAGAGGCCCCAACCACTCTGGAGGTAGCAGGCCGCATGCTTGGCGgtcagtggtgggaggttagttcagtgctttttttcatagctaagttaaga Alignment from Exonerate_coding2genome GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGC-TCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacaggaagactttgtgtatgtgtagactttcttctcatttgacatgcagGATCATGTGGCCTCCCTAGAAGGCATGGCCCCTGAAGATCAGGCTGTGCTTCTTGCAGGCCTCCCCACTGGAAGATGACGCCACCCTGGGCCAGTGTGGCGTAGAGGCCCCAACCACTCTGGAGGTAGCAGGCCGCATGCTTGGCGgtcagtggtgggaggttagttcagtgctttttttcatagctaagttaaga Alignment from GeneWise GATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGC-TCGCCGCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGCATGCTGGGAG cacaggaagactttgtgtatgtgtagactttcttctcatttgacatgcagGATCATGTGGCCTCCCTAGAAGGCATGGCCCCTGAAGATCAGGCTGTGCTTCTTGCAGGCCTCCCCACTGGAAGATGACGCCACCCTGGGCCAGTGTGGCGTAGAGGCCCCAACCACTCTGGAGGTAGCAGGCCGCATGCTTGGCGgtcagtggtgggaggttagttcagtgctttttttcatagctaagttaaga #### Fau_ID1403_3 --> 2 - 0 Original Alignment gtAAAGTTCACGGTTCCCTGGCT-CGGGCTGGAAAAGTGAGAGGTCAGACTCCCAAG agatgtgactctgctacttaacctgaccaaattcttccttctcccaaaaggtATAGTTCATGGCTCCCTCGCTCCGGGCTGGAAAAGTAAGAGGCCAGACTCCTAAAgtgagagataggggtgaagtttgttactttccaccacagccaaggaaggc Alignment from CESAR gtAAAGTTCACGGTTCCCTGGCT-CGGGCTGGAAAAGTGAGAGGTCAGACTCCCAAG agatgtgactctgctacttaacctgaccaaattcttccttctcccaaaaggtATAGTTCATGGCTCCCTCGCTCCGGGCTGGAAAAGTAAGAGGCCAGACTCCTAAAgtgagagataggggtgaagtttgttactttccaccacagccaaggaaggc Alignment from Spaln_aa2Genome GTAAAGTTCACGGTTCCCTGGCT-CGGGCTGGAAAAGTGAGAGGTCAGACTCCCAAG agatgtgactctgctacttaacctgaccaaattcttccttctcccaaaagGTATAGTTCATGGCTCCCTCGCTcCGGGCTGGAAAAGTAAGAGGCCAGACTCCTAAAgtgagagataggggtgaagtttgttactttccaccacagccaaggaaggc Alignment from Spaln_nt2Genome GTAAAGTTCACGGTTCCCTGGCTC-GGGCTGGAAAAGTGAGAGGTCAGACTCCCAAG agatgtgactctgctacttaacctgaccaaattcttccttctcccaaaagGTATAGTTCATGGCTCCCTCGCTCCGGGCTGGAAAAGTAAGAGGCCAGACTCCTAAAgtgagagataggggtgaagtttgttactttccaccacagccaaggaaggc Alignment from Pairagon GTAAAGTTCACGGTTCCCTGGCT-CGGGCTGGAAAAGTGAGAGGTCAGACTCCCAAG agatgtgactctgctacttaacctgaccaaattcttccttctcccaaaagGTATAGTTCATGGCTCCCTCGCTCCGGGCTGGAAAAGTAAGAGGCCAGACTCCTAAAgtgagagataggggtgaagtttgttactttccaccacagccaaggaaggc Alignment from Exonerate_protein2genome GTAAAGTTCACGGTTCCCTGGCT-CGGGCTGGAAAAGTGAGAGGTCAGACTCCCAAG agatgtgactctgctacttaacctgaccaaattcttccttctcccaaaagGTATAGTTCATGGCTCCCTCGCTCCGGGCTGGAAAAGTAAGAGGCCAGACTCCTAAAgtgagagataggggtgaagtttgttactttccaccacagccaaggaaggc Alignment from Exonerate_coding2genome GTAAAGTTCACGGTTCCCTGGCT-CGGGCTGGAAAAGTGAGAGGTCAGACTCCCAAG agatgtgactctgctacttaacctgaccaaattcttccttctcccaaaagGTATAGTTCATGGCTCCCTCGCTCCGGGCTGGAAAAGTAAGAGGCCAGACTCCTAAAgtgagagataggggtgaagtttgttactttccaccacagccaaggaaggc Alignment from GeneWise TCCCTGGCT---------CGGGCTGGAAAAGTGAGAGGTCAGACTCCCAAG agatgtgactctgctacttaacctgaccaaattcttccttctcccaaaaggtatagTTCATGGCTCCCTCGCTCCGGGCTGGAAAAGTAAGAGGCCAGACTCCTAAAgtgagagataggggtgaagtttgttactttccaccacagccaaggaaggc #### Fibp_ID1009_6 --> 2 - 2 Original Alignment acTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTC-GTGGCTGACAAGGACCTCCTGGACCTGCATAAGag atatccaagatggtttatgcatatacaatattgttggggtttccttgcagacTCTCAGGTGGATGACATGGATGTTGACTTAGATAAAGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTTCGTGGCTGACAAGGACCTCCTAGACCTGCATAAGaggtaagagtgggatgcatggggcataggatacaacacacagtttatagacg Alignment from CESAR acTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTC-GTGGCTGACAAGGACCTCCTGGACCTGCATAAGag atatccaagatggtttatgcatatacaatattgttggggtttccttgcagacTCTCAGGTGGATGACATGGATGTTGACTTAGATAAAGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTTCGTGGCTGACAAGGACCTCCTAGACCTGCATAAGaggtaagagtgggatgcatggggcataggatacaacacacagtttatagact Alignment from Spaln_aa2Genome ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTC-GTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG atatccaagatggtttatgcatatacaatattgttggggtttccttgcagACTCTCAGGTGGATGACATGGATGTTGACTTAGATAAAGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTTcGTGGCTGACAAGGACCTCCTAGACCTGCATAAGAGgtaagagtgggatgcatggggcataggatacaacacacagtttatagacg Alignment from Spaln_nt2Genome ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTC-TCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG atatccaagatggtttatgcatatacaatattgttggggtttccttgcagACTCTCAGGTGGATGACATGGATGTTGACTTAGATAAAGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTTCGTGGCTGACAAGGACCTCCTAGACCTGCATAAGAGgtaagagtgggatgcatggggcataggatacaacacacagtttatagacg Alignment from Pairagon ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTC-TCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG atatccaagatggtttatgcatatacaatattgttggggtttccttgcagACTCTCAGGTGGATGACATGGATGTTGACTTAGATAAAGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTTCGTGGCTGACAAGGACCTCCTAGACCTGCATAAGAGgtaagagtgggatgcatggggcataggatacaacacacagtttatagacg Alignment from Exonerate_protein2genome ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTC-GTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG atatccaagatggtttatgcatatacaatattgttggggtttccttgcagACTCTCAGGTGGATGACATGGATGTTGACTTAGATAAAGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTTCGTGGCTGACAAGGACCTCCTAGACCTGCATAAGAGgtaagagtgggatgcatggggcataggatacaacacacagtttatagacg Alignment from Exonerate_coding2genome ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTC-GTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG atatccaagatggtttatgcatatacaatattgttggggtttccttgcagACTCTCAGGTGGATGACATGGATGTTGACTTAGATAAAGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTTCGTGGCTGACAAGGACCTCCTAGACCTGCATAAGAGgtaagagtgggatgcatggggcataggatacaacacacagtttatagacg Alignment from GeneWise ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTC-GTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG atatccaagatggtttatgcatatacaatattgttggggtttccttgcagACTCTCAGGTGGATGACATGGATGTTGACTTAGATAAAGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTTCGTGGCTGACAAGGACCTCCTAGACCTGCATAAGAGgtaagagtgggatgcatggggcataggatacaacacacagtttatagacg #### Fibp_ID1012_9 --> 0 - 2 Original Alignment TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCG-TCAGTCCACTCCCTGGATGGCTTCcg agttgagcacaggactgcttgtggtgactttttttttttttttttggcagTTTGTGGAACCATGCCGCTCCGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCTCAGCCAGTATTCAGTGCTCAGTCCATTCCCTGGATGGCTTCcggtaagaagtgctaagcatgcttgctagcttccttggcctccttgaggctc Alignment from CESAR TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCG-TCAGTCCACTCCCTGGATGGCTTCcg agttgagcacaggactgcttgtggtgactttttttttttttttttggcagTTTGTGGAACCATGCCGCTCCGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCTCAGCCAGTATTCAGTGCTCAGTCCATTCCCTGGATGGCTTCcggtaagaagtgctaagcatgcttgctagcttccttggcctccttgaggctc Alignment from Spaln_aa2Genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCG-TCAGTCCACTCCCTGGATGGCTTCCG agttgagcacaggactgcttgtggtgactttttttttttttttttggcagTTTGTGGAACCATGCCGCTCCGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCTCAGCCAGTATTCAGTGcTCAGTCCATTCCCTGGATGGCTTCCGgtaagaagtgctaagcatgcttgctagcttccttggcctccttgaggctc Alignment from Spaln_nt2Genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCG-TCAGTCCACTCCCTGGATGGCTTCCG agttgagcacaggactgcttgtggtgactttttttttttttttttggcagTTTGTGGAACCATGCCGCTCCGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCTCAGCCAGTATTCAGTGCTCAGTCCATTCCCTGGATGGCTTCCGgtaagaagtgctaagcatgcttgctagcttccttggcctccttgaggctc Alignment from Pairagon TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCG-TCAGTCCACTCCCTGGATGGCTTCCG agttgagcacaggactgcttgtggtgactttttttttttttttttggcagTTTGTGGAACCATGCCGCTCCGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCTCAGCCAGTATTCAGTGCTCAGTCCATTCCCTGGATGGCTTCCGgtaagaagtgctaagcatgcttgctagcttccttggcctccttgaggctc Alignment from Exonerate_protein2genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCA-GCGTCAGTCCACTCCCTGGATGGCTTCCG agttgagcacaggactgcttgtggtgactttttttttttttttttggcagTTTGTGGAACCATGCCGCTCCGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCTCAGCCAGTATTCAGTGCTCAGTCCATTCCCTGGATGGCTTCCGgtaagaagtgctaagcatgcttgctagcttccttggcctccttgaggctc Alignment from Exonerate_coding2genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCA-GCGTCAGTCCACTCCCTGGATGGCTTCCG agttgagcacaggactgcttgtggtgactttttttttttttttttggcagTTTGTGGAACCATGCCGCTCCGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCTCAGCCAGTATTCAGTGCTCAGTCCATTCCCTGGATGGCTTCCGgtaagaagtgctaagcatgcttgctagcttccttggcctccttgaggctc Alignment from GeneWise TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCA-GCGTCAGTCCACTCCCTGGATGGCTTCCG agttgagcacaggactgcttgtggtgactttttttttttttttttggcagTTTGTGGAACCATGCCGCTCCGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCTCAGCCAGTATTCAGTGCTCAGTCCATTCCCTGGATGGCTTCCGgtaagaagtgctaagcatgcttgctagcttccttggcctccttgaggctc #### Fkbp2_ID1947_2 --> 0 - 2 Original Alignment GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATC-AAGGGCTGGGACCAGGGGCTGCTGgg ttgaacaacctctccttactagtttttctctcatgtgctgttacctctagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATTTTCTCCCTTGGCACTGGCCAGGTTATCCAAGGGCTGGGACCAGGGGCTACTGgggtgagtctcgtttttaatacaagttgtagtgagtgctacagtgagtgagc Alignment from CESAR GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATC-AAGGGCTGGGACCAGGGGCTGCTGgg ttgaacaacctctccttactagtttttctctcatgtgctgttacctctagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATTTTCTCCCTTGGCACTGGCCAGGTTATCCAAGGGCTGGGACCAGGGGCTACTGgggtgagtctcgtttttaatacaagttgtagtgagtgctacagtgagtgagc Alignment from Spaln_aa2Genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATC-AAGGGCTGGGACCAGGGGCTGCTGGG ttgaacaacctctccttactagtttttctctcatgtgctgttacctctagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATTTTCTCCCTTGGCACTGGCCAGGTTATCcAAGGGCTGGGACCAGGGGCTACTGGGgtgagtctcgtttttaatacaagttgtagtgagtgctacagtgagtgagc Alignment from Spaln_nt2Genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTAT-CAAGGGCTGGGACCAGGGGCTGCTGGG ttgaacaacctctccttactagtttttctctcatgtgctgttacctctagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATTTTCTCCCTTGGCACTGGCCAGGTTATCCAAGGGCTGGGACCAGGGGCTACTGGGgtgagtctcgtttttaatacaagttgtagtgagtgctacagtgagtgagc Alignment from Pairagon GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTAT-CAAGGGCTGGGACCAGGGGCTGCTGGG ttgaacaacctctccttactagtttttctctcatgtgctgttacctctagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATTTTCTCCCTTGGCACTGGCCAGGTTATCCAAGGGCTGGGACCAGGGGCTACTGGGgtgagtctcgtttttaatacaagttgtagtgagtgctacagtgagtgagc Alignment from Exonerate_protein2genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATC-AAGGGCTGGGACCAGGGGCTGCTGGG ttgaacaacctctccttactagtttttctctcatgtgctgttacctctagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATTTTCTCCCTTGGCACTGGCCAGGTTATCCAAGGGCTGGGACCAGGGGCTACTGGGgtgagtctcgtttttaatacaagttgtagtgagtgctacagtgagtgagc Alignment from Exonerate_coding2genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATC-AAGGGCTGGGACCAGGGGCTGCTGGG ttgaacaacctctccttactagtttttctctcatgtgctgttacctctagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATTTTCTCCCTTGGCACTGGCCAGGTTATCCAAGGGCTGGGACCAGGGGCTACTGGGgtgagtctcgtttttaatacaagttgtagtgagtgctacagtgagtgagc Alignment from GeneWise GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTT-ATCAAGGGCTGGGACCAGGGGCTGCTGGG ttgaacaacctctccttactagtttttctctcatgtgctgttacctctagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATTTTCTCCCTTGGCACTGGCCAGGTTATCCAAGGGCTGGGACCAGGGGCTACTGGGgtgagtctcgtttttaatacaagttgtagtgagtgctacagtgagtgagc #### Frmd8_ID1284_4 --> 2 - 0 Original Alignment atGAGCCTTCCCTTCAGTTCCGAAGG-AATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG ggctgccttaacctagggaaccaggaaatgaaggcccacccaaaccacagatGAGCCTTCCCTTCACTTCCGAAGGCAATGTTTTTTTCCCCAGGCAGCGCGAGCTCCAGgtacgtcaggacttaggcatatcaaagtgttccagtatgtcaatgccagt Alignment from CESAR atGAGCCTTCCCTTCAGTTCCGAAGG-AATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG ggctgccttaacctagggaaccaggaaatgaaggcccacccaaaccacagatGAGCCTTCCCTTCACTTCCGAAGGCAATGTTTTTTTCCCCAGGCAGCGCGAGCTCCAGgtacgtcaggacttaggcatatcaaagtgttccagtatgtcaatgccagt Alignment from Spaln_aa2Genome ATGAGCCTTCCCTTCAGTTCCGAAGG-AATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG ggctgccttaacctagggaaccaggaaatgaaggcccacccaaaccacagATGAGCCTTCCCTTCACTTCCGAAGGcAATGTTTTTTTCCCCAGGCAGCGCGAGCTCCAGgtacgtcaggacttaggcatatcaaagtgttccagtatgtcaatgccagt Alignment from Spaln_nt2Genome ATGAGCCTTCCCTTCAGTTCCGAAGGAATGTTTT-TTTC-CCAAGGCGCCGAGAGCTCCAG ggctgccttaacctagggaaccaggaaatgaaggcccacccaaaccacagATGAGCCTTCCCTTCACTTCCGAAGGCAATGTTTTTTT-CCCCAGGCAGCGCGAGCTCCAGgtacgtcaggacttaggcatatcaaagtgttccagtatgtcaatgccagt Alignment from Pairagon ATGAGCCTTCCCTTCAGTTCCGAAGG-AATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG ggctgccttaacctagggaaccaggaaatgaaggcccacccaaaccacagATGAGCCTTCCCTTCACTTCCGAAGGCAATGTTTTTTTCCCCAGGCAGCGCGAGCTCCAGgtacgtcaggacttaggcatatcaaagtgttccagtatgtcaatgccagt Alignment from Exonerate_protein2genome TCGCCATGGATGAGCCTTCCCTTCAGTTCCGAAGG-AATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG ggctgccttaacctagggaaccaggaaatgaaggcccacccAAACCACAGATGAGCCTTCCCTTCACTTCCGAAGGCAATGTTTTTTTCCCCAGGCAGCGCGAGCTCCAGgtacgtcaggacttaggcatatcaaagtgttccagtatgtcaatgccagt Alignment from Exonerate_coding2genome TCGCCATGGATGAGCCTTCCCTTCAGTTCCGAAGG-AATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG ggctgccttaacctagggaaccaggaaatgaaggcccacccAAACCACAGATGAGCCTTCCCTTCACTTCCGAAGGCAATGTTTTTTTCCCCAGGCAGCGCGAGCTCCAGgtacgtcaggacttaggcatatcaaagtgttccagtatgtcaatgccagt Alignment from GeneWise CCTTCAGTTCCGAAGG------AATGTTTTTTTCCCAAGGCGCCGAGAGCTCCAG ggctgccttaacctagggaaccaggaaatgaaggcccacccaaaccacagatgagCCTTCCCTTCACTTCCGAAGGCAATGTTTTTTTCCCCAGGCAGCGCGAGCTCCAGgtacgtcaggacttaggcatatcaaagtgttccagtatgtcaatgccagt #### Fth1_ID2624_3 --> 0 - 0 Original Alignment AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACT-GACAAGAATGATCCCCAC tgctggcttggactgatgattaggatgaatctgctcctactcatccccagAAACCAGACCGTGATGATTGGGAGAGTGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGTTGCACAAACTGGCGACTCGACAAGAATGACCCCCATgtaagtctgggaaacaacggatgggtggaggagatgatttgctaggacct Alignment from CESAR AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACT-GACAAGAATGATCCCCAC tgctggcttggactgatgattaggatgaatctgctcctactcatccccagAAACCAGACCGTGATGATTGGGAGAGTGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGTTGCACAAACTGGCGACTCGACAAGAATGACCCCCATgtaagtctgggaaacaacggatgggtggaggagatgatttgctaggacct Alignment from Spaln_aa2Genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACT-GACAAGAATGATCCCCAC tgctggcttggactgatgattaggatgaatctgctcctactcatccccagAAACCAGACCGTGATGATTGGGAGAGTGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGTTGCACAAACTGGCGACTcGACAAGAATGACCCCCATgtaagtctgggaaacaacggatgggtggaggagatgatttgctaggacct Alignment from Spaln_nt2Genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACT-GACAAGAATGATCCCCAC tgctggcttggactgatgattaggatgaatctgctcctactcatccccagAAACCAGACCGTGATGATTGGGAGAGTGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGTTGCACAAACTGGCGACTCGACAAGAATGACCCCCATgtaagtctgggaaacaacggatgggtggaggagatgatttgctaggacct Alignment from Pairagon AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACT-GACAAGAATGATCCCCAC tgctggcttggactgatgattaggatgaatctgctcctactcatccccagAAACCAGACCGTGATGATTGGGAGAGTGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGTTGCACAAACTGGCGACTCGACAAGAATGACCCCCATgtaagtctgggaaacaacggatgggtggaggagatgatttgctaggacct Alignment from Exonerate_protein2genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACT-GACAAGAATGATCCCCAC tgctggcttggactgatgattaggatgaatctgctcctactcatccccagAAACCAGACCGTGATGATTGGGAGAGTGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGTTGCACAAACTGGCGACTCGACAAGAATGACCCCCATgtaagtctgggaaacaacggatgggtggaggagatgatttgctaggacct Alignment from Exonerate_coding2genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACT-GACAAGAATGATCCCCAC tgctggcttggactgatgattaggatgaatctgctcctactcatccccagAAACCAGACCGTGATGATTGGGAGAGTGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGTTGCACAAACTGGCGACTCGACAAGAATGACCCCCATgtaagtctgggaaacaacggatgggtggaggagatgatttgctaggacct Alignment from GeneWise AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCT-ACTGACAAGAATGATCCCCAC tgctggcttggactgatgattaggatgaatctgctcctactcatccccagAAACCAGACCGTGATGATTGGGAGAGTGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGTTGCACAAACTGGCGACTCGACAAGAATGACCCCCATgtaagtctgggaaacaacggatgggtggaggagatgatttgctaggacct #### Ganab_ID2469_8 --> 0 - 1 Original Alignment CCAGAGGAGACC-CAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATg ggggagagatacctgaggtgtaagtgggccctctcttctgttccctgcagCCAGAGGAGACCCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATggtacaagattgggcaagaccaaagagaagtgcatcccttcttttttcttt Alignment from CESAR CCAGAGGAGACC-CAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATg ggggagagatacctgaggtgtaagtgggccctctcttctgttccctgcagCCAGAGGAGACCCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATggtacaagattgggcaagaccaaagagaagtgcagacgacctaatgtttct Alignment from Spaln_aa2Genome CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG ggggagagatacctgaggtgtaagtgggccctctcttctgttccctgcagccag---AGGAGACCCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtacaagattgggcaagaccaaagagaagtgcatcccttcttttttcttt Alignment from Spaln_nt2Genome CCAGAGGAGACCC-AGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG ggggagagatacctgaggtgtaagtgggccctctcttctgttccctgcagCCAGAGGAGACCCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtacaagattgggcaagaccaaagagaagtgcatcccttcttttttcttt Alignment from Pairagon CCAGAGGAGA-CCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG ggggagagatacctgaggtgtaagtgggccctctcttctgttccctgcagCCAGAGGAGACCCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtacaagattgggcaagaccaaagagaagtgcatcccttcttttttcttt Alignment from Exonerate_protein2genome CCAGAGGAGACC-CAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG ggggagagatacctgaggtgtaagtgggccctctcttctgttccctgcagCCAGAGGAGACCCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtacaagattgggcaagaccaaagagaagtgcatcccttcttttttcttt Alignment from Exonerate_coding2genome CCAGAGGAGACC-CAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG ggggagagatacctgaggtgtaagtgggccctctcttctgttccctgcagCCAGAGGAGACCCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtacaagattgggcaagaccaaagagaagtgcatcccttcttttttcttt Alignment from GeneWise ------CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTAT--------------------------------------------------- ggggagagatacctgaggtgtaagtgggccctctcttctgttccctgcagccagAGGAGACCC---------CAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGGTACAAGATTGGGCAAGACCAAAGAGAAGTGCATCCCTTCTTTTTTCTTT #### Ganab_ID2473_12 --> 2 - 0 Original Alignment ggACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTC-ACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG tattaagttttgcacttttaccagcctgcctgacagcactgtcttcctagggACCCAGGCCTTGCCCCCACCCTCATCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCAGATGTCTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCCACCTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGCTTGATCACCTGGCTTCCAAGAGGCGGAAGgttagggggtgctgtagctgtgagggtgccttttgtacagtgttggggat Alignment from CESAR ggACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTC-ACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG tattaagttttgcacttttaccagcctgcctgacagcactgtcttcctagggACCCAGGCCTTGCCCCCACCCTCATCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCAGATGTCTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCCACCTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGCTTGATCACCTGGCTTCCAAGAGGCGGAAGgttagggggtgctgtagctgtgagggtgccttttgtacagtgttggggat Alignment from Spaln_aa2Genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTC-ACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG tattaagttttgcacttttaccagcctgcctgacagcactgtcttcctagGGACCCAGGCCTTGCCCCCACCCTCATCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCAGATGTCTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCcACCTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGCTTGATCACCTGGCTTCCAAGAGGCGGAAGgttagggggtgctgtagctgtgagggtgccttttgtacagtgttggggat Alignment from Spaln_nt2Genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTT-CACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG tattaagttttgcacttttaccagcctgcctgacagcactgtcttcctagGGACCCAGGCCTTGCCCCCACCCTCATCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCAGATGTCTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCCACCTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGCTTGATCACCTGGCTTCCAAGAGGCGGAAGgttagggggtgctgtagctgtgagggtgccttttgtacagtgttggggat Alignment from Pairagon GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTT-CACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG tattaagttttgcacttttaccagcctgcctgacagcactgtcttcctagGGACCCAGGCCTTGCCCCCACCCTCATCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCAGATGTCTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCCACCTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGCTTGATCACCTGGCTTCCAAGAGGCGGAAGgttagggggtgctgtagctgtgagggtgccttttgtacagtgttggggat Alignment from Exonerate_protein2genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTC-ACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG tattaagttttgcacttttaccagcctgcctgacagcactgtcttcctagGGACCCAGGCCTTGCCCCCACCCTCATCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCAGATGTCTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCCACCTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGCTTGATCACCTGGCTTCCAAGAGGCGGAAGgttagggggtgctgtagctgtgagggtgccttttgtacagtgttggggat Alignment from Exonerate_coding2genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTC-ACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG tattaagttttgcacttttaccagcctgcctgacagcactgtcttcctagGGACCCAGGCCTTGCCCCCACCCTCATCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCAGATGTCTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCCACCTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGCTTGATCACCTGGCTTCCAAGAGGCGGAAGgttagggggtgctgtagctgtgagggtgccttttgtacagtgttggggat Alignment from GeneWise GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTC-ACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG tattaagttttgcacttttaccagcctgcctgacagcactgtcttcctagGGACCCAGGCCTTGCCCCCACCCTCATCCCTTGGCTATCACCAAAGTCGCTGGAACTACCGTGATGAGGCAGATGTCTTGGAAGTGGATCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCCACCTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGCTTGATCACCTGGCTTCCAAGAGGCGGAAGgttagggggtgctgtagctgtgagggtgccttttgtacagtgttggggat #### Ganab_ID2475_14 --> 2 - 0 Original Alignment gcTCAGCTAGTTACCCTGACTTCACT-AATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG atgaagcagtcatataggcaaagatattcctctctgcctccttccagcaggcTCAGCTAGTTACCCTGACTTCACTCAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtactaaagactatccatatgtcctctgtttttgtaaaatgccttcatta Alignment from CESAR gcTCAGCTAGTTACCCTGACTTCACT-AATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG atgaagcagtcatataggcaaagatattcctctctgcctccttccagcaggcTCAGCTAGTTACCCTGACTTCACTCAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtactaaagactatccatatgtcctctgtttttgtaaaatgccttcatta Alignment from Spaln_aa2Genome GCTCAGCTAGTTACCCTGACTTCACT-AATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG atgaagcagtcatataggcaaagatattcctctctgcctccttccagcagGCTCAGCTAGTTACCCTGACTTCACTcAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtactaaagactatccatatgtcctctgtttttgtaaaatgccttcatta Alignment from Spaln_nt2Genome GCTCAGCTAGTTACCCTGACTTCACT-AATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG atgaagcagtcatataggcaaagatattcctctctgcctccttccagcagGCTCAGCTAGTTACCCTGACTTCACTCAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtactaaagactatccatatgtcctctgtttttgtaaaatgccttcatta Alignment from Pairagon GCTCAGCTAGTTACCCTGACTTCACT-AATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG atgaagcagtcatataggcaaagatattcctctctgcctccttccagcagGCTCAGCTAGTTACCCTGACTTCACTCAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtactaaagactatccatatgtcctctgtttttgtaaaatgccttcatta Alignment from Exonerate_protein2genome GCTCAGCTAGTTACCCTGACTTCACT-AATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG atgaagcagtcatataggcaaagatattcctctctgcctccttccagcagGCTCAGCTAGTTACCCTGACTTCACTCAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtactaaagactatccatatgtcctctgtttttgtaaaatgccttcatta Alignment from Exonerate_coding2genome GCTCAGCTAGTTACCCTGACTTCACT-AATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG atgaagcagtcatataggcaaagatattcctctctgcctccttccagcagGCTCAGCTAGTTACCCTGACTTCACTCAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtactaaagactatccatatgtcctctgtttttgtaaaatgccttcatta Alignment from GeneWise --GGCTCAGCTAGTTACCCTGACTTC-ACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAG atgaagcagtcatataggcaaagatattcctctctgcctccttccagCAGGCTCAGCTAGTTACCCTGACTTCACTCAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtactaaagactatccatatgtcctctgtttttgtaaaatgccttcatta #### Ganab_ID2476_15 --> 0 - 0 Original Alignment GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGAC-ATCCATAACATCTATGGCTTATATGTG agtcgtcgcctttttctccccccctacaagatatccctctataccttcagGGTTCAGCTCCTAATCTCTATGTCTGGAATGATATGAATGAACCATCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCAGTGCATTATGGGGGCTGGGAGCACCGGGACCATCCATAATTTCTATGGCTTATATGTGgtaagcaactggagaggaagtggacagacaaaggggaaggcagtaaggca Alignment from CESAR GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGAC-ATCCATAACATCTATGGCTTATATGTG agtcgtcgcctttttctccccccctacaagatatccctctataccttcagGGTTCAGCTCCTAATCTCTATGTCTGGAATGATATGAATGAACCATCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCAGTGCATTATGGGGGCTGGGAGCACCGGGACCATCCATAATTTCTATGGCTTATATGTGgtaagcaactggagaggaagtggacagacaaaggggaaggcagtaaggca Alignment from Spaln_aa2Genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGAC-ATCCATAACATCTATGGCTTATATGTG agtcgtcgcctttttctccccccctacaagatatccctctataccttcagGGTTCAGCTCCTAATCTCTATGTCTGGAATGATATGAATGAACCATCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCAGTGCATTATGGGGGCTGGGAGCACCGGGACcATCCATAATTTCTATGGCTTATATGTGgtaagcaactggagaggaagtggacagacaaaggggaaggcagtaaggca Alignment from Spaln_nt2Genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGA-CATCCATAACATCTATGGCTTATATGTG agtcgtcgcctttttctccccccctacaagatatccctctataccttcagGGTTCAGCTCCTAATCTCTATGTCTGGAATGATATGAATGAACCATCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCAGTGCATTATGGGGGCTGGGAGCACCGGGACCATCCATAATTTCTATGGCTTATATGTGgtaagcaactggagaggaagtggacagacaaaggggaaggcagtaaggca Alignment from Pairagon GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGA-CATCCATAACATCTATGGCTTATATGTG agtcgtcgcctttttctccccccctacaagatatccctctataccttcagGGTTCAGCTCCTAATCTCTATGTCTGGAATGATATGAATGAACCATCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCAGTGCATTATGGGGGCTGGGAGCACCGGGACCATCCATAATTTCTATGGCTTATATGTGgtaagcaactggagaggaagtggacagacaaaggggaaggcagtaaggca Alignment from Exonerate_protein2genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGAC-ATCCATAACATCTATGGCTTATATGTG agtcgtcgcctttttctccccccctacaagatatccctctataccttcagGGTTCAGCTCCTAATCTCTATGTCTGGAATGATATGAATGAACCATCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCAGTGCATTATGGGGGCTGGGAGCACCGGGACCATCCATAATTTCTATGGCTTATATGTGgtaagcaactggagaggaagtggacagacaaaggggaaggcagtaaggca Alignment from Exonerate_coding2genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGAC-ATCCATAACATCTATGGCTTATATGTG agtcgtcgcctttttctccccccctacaagatatccctctataccttcagGGTTCAGCTCCTAATCTCTATGTCTGGAATGATATGAATGAACCATCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCAGTGCATTATGGGGGCTGGGAGCACCGGGACCATCCATAATTTCTATGGCTTATATGTGgtaagcaactggagaggaagtggacagacaaaggggaaggcagtaaggca Alignment from GeneWise GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAATGAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGAC-ATCCATAACATCTATGGCTTATATGTG agtcgtcgcctttttctccccccctacaagatatccctctataccttcagGGTTCAGCTCCTAATCTCTATGTCTGGAATGATATGAATGAACCATCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCAGTGCATTATGGGGGCTGGGAGCACCGGGACCATCCATAATTTCTATGGCTTATATGTGgtaagcaactggagaggaagtggacagacaaaggggaaggcagtaaggca #### Ganab_ID2478_17 --> 2 - 1 Original Alignment gaGCTGTGTGGACAGGGGACAACACTGCCGAATGG-GATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAg gactgcaatccctgcgatgtatcaggctgataaattgctttcattttcaggaGCTGTGTGGACAGGGGACAACACTGCCGAATGGCGATCATTTGAAGATCTCTATCCATATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAggcaagtgaaggagacatttggggtattgcattggacatttggggttttgt Alignment from CESAR gaGCTGTGTGGACAGGGGACAACACTGCCGAATGG-GATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAg gactgcaatccctgcgatgtatcaggctgataaattgctttcattttcaggaGCTGTGTGGACAGGGGACAACACTGCCGAATGGCGATCATTTGAAGATCTCTATCCATATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAggcaagtgaaggagacatttggggtattgcattggacatttggggttttgt Alignment from Spaln_aa2Genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGG-GATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG gactgcaatccctgcgatgtatcaggctgataaattgctttcattttcagGAGCTGTGTGGACAGGGGACAACACTGCCGAATGGcGATCATTTGAAGATCTCTATCCATATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAGgcaagtgaaggagacatttggggtattgcattggacatttggggttttgt Alignment from Spaln_nt2Genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGG-GATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG gactgcaatccctgcgatgtatcaggctgataaattgctttcattttcagGAGCTGTGTGGACAGGGGACAACACTGCCGAATGGCGATCATTTGAAGATCTCTATCCATATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAGgcaagtgaaggagacatttggggtattgcattggacatttggggttttgt Alignment from Pairagon GAGCTGTGTGGACAGGGGACAACACTGCCGAATGG-GATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG gactgcaatccctgcgatgtatcaggctgataaattgctttcattttcagGAGCTGTGTGGACAGGGGACAACACTGCCGAATGGCGATCATTTGAAGATCTCTATCCATATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAGgcaagtgaaggagacatttggggtattgcattggacatttggggttttgt Alignment from Exonerate_protein2genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGG-GATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG gactgcaatccctgcgatgtatcaggctgataaattgctttcattttcagGAGCTGTGTGGACAGGGGACAACACTGCCGAATGGCGATCATTTGAAGATCTCTATCCATATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAGgcaagtgaaggagacatttggggtattgcattggacatttggggttttgt Alignment from Exonerate_coding2genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGG-GATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG gactgcaatccctgcgatgtatcaggctgataaattgctttcattttcagGAGCTGTGTGGACAGGGGACAACACTGCCGAATGGCGATCATTTGAAGATCTCTATCCATATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAGgcaagtgaaggagacatttggggtattgcattggacatttggggttttgt Alignment from GeneWise GAGCTGTGTGGACAGGGGACAACACTGCCGAATGG-GATCATTTGAAGATCTCTATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTC- gactgcaatccctgcgatgtatcaggctgataaattgctttcattttcagGAGCTGTGTGGACAGGGGACAACACTGCCGAATGGCGATCATTTGAAGATCTCTATCCATATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTgtggaggcaagtgaaggagacatttggggtattgcattggacatttggggttttgt #### Ganab_ID2481_20 --> 2 - 0 Original Alignment gtGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTAT-TTGCCTGGCCAAGAAGAA ggtcccataaatgtgtatgacatggtatagtgtgaactgctgtgttccaggtGACACACTCCTTATTCATCCTGTATCAGATGCTGGGGCCCATGGAGTGCAGGTTTATCTTGCCTGGCCAAGAAGAAgtattccaccaaacatagcagccaaagggacaaaaacatagaagccctat Alignment from CESAR gtGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTAT-TTGCCTGGCCAAGAAGAA ggtcccataaatgtgtatgacatggtatagtgtgaactgctgtgttccaggtGACACACTCCTTATTCATCCTGTATCAGATGCTGGGGCCCATGGAGTGCAGGTTTATCTTGCCTGGCCAAGAAGAAgtattccaccaaacatagcagccaaagggacaaaaacatagaagccctat Alignment from Spaln_aa2Genome GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTAT-TTGCCTGGCCAAGAAGAA ggtcccataaatgtgtatgacatggtatagtgtgaactgctgtgttccagGTGACACACTCCTTATTCATCCTGTATCAGATGCTGGGGCCCATGGAGTGCAGGTTTATcTTGCCTGGCCAAGAAGAAgtattccaccaaacatagcagccaaagggacaaaaacatagaagccctat Alignment from Spaln_nt2Genome GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTATT-TGCCTGGCCAAGAAGAA ggtcccataaatgtgtatgacatggtatagtgtgaactgctgtgttccagGTGACACACTCCTTATTCATCCTGTATCAGATGCTGGGGCCCATGGAGTGCAGGTTTATCTTGCCTGGCCAAGAAGAAgtattccaccaaacatagcagccaaagggacaaaaacatagaagccctat Alignment from Pairagon GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTAT-TTGCCTGGCCAAGAAGAA ggtcccataaatgtgtatgacatggtatagtgtgaactgctgtgttccagGTGACACACTCCTTATTCATCCTGTATCAGATGCTGGGGCCCATGGAGTGCAGGTTTATCTTGCCTGGCCAAGAAGAAgtattccaccaaacatagcagccaaagggacaaaaacatagaagccctat Alignment from Exonerate_protein2genome GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTAT-TTGCCTGGCCAAGAAGAA ggtcccataaatgtgtatgacatggtatagtgtgaactgctgtgttccagGTGACACACTCCTTATTCATCCTGTATCAGATGCTGGGGCCCATGGAGTGCAGGTTTATCTTGCCTGGCCAAGAAGAAgtattccaccaaacatagcagccaaagggacaaaaacatagaagccctat Alignment from Exonerate_coding2genome GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTAT-TTGCCTGGCCAAGAAGAA ggtcccataaatgtgtatgacatggtatagtgtgaactgctgtgttccagGTGACACACTCCTTATTCATCCTGTATCAGATGCTGGGGCCCATGGAGTGCAGGTTTATCTTGCCTGGCCAAGAAGAAgtattccaccaaacatagcagccaaagggacaaaaacatagaagccctat Alignment from GeneWise GTGATGCACTCCTTATTCACCCTGTATCGGATGCTGGGGCCCACGGAGTGCAGGTCTAT-TTGCCTGGCCAAGAAGAA ggtcccataaatgtgtatgacatggtatagtgtgaactgctgtgttccagGTGACACACTCCTTATTCATCCTGTATCAGATGCTGGGGCCCATGGAGTGCAGGTTTATCTTGCCTGGCCAAGAAGAAgtattccaccaaacatagcagccaaagggacaaaaacatagaagccctat #### Ganab_ID2483_22 --> 0 - 0 Original Alignment ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACT-CTCTTTGTTGCTCTCAGTCCCCAG gtatgcttggaaggcatgaaggaggcttaaaccttacacacctttttcagATCCCCGTGTTCCAGCGTGGTGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCCTCTTTGTTGCTCTCAGTCCCCAGgtaaagatccagtggatgagggctgacttaattattgactgtcctttacg Alignment from CESAR ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACT-CTCTTTGTTGCTCTCAGTCCCCAG gtatgcttggaaggcatgaaggaggcttaaaccttacacacctttttcagATCCCCGTGTTCCAGCGTGGTGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCCTCTTTGTTGCTCTCAGTCCCCAGgtaaagatccagtggatgagggctgacttaattattgactgtcctttacg Alignment from Spaln_aa2Genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACT-CTCTTTGTTGCTCTCAGTCCCCAG gtatgcttggaaggcatgaaggaggcttaaaccttacacacctttttcagATCCCCGTGTTCCAGCGTGGTGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTcCTCTTTGTTGCTCTCAGTCCCCAGgtaaagatccagtggatgagggctgacttaattattgactgtcctttacg Alignment from Spaln_nt2Genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACT-CTCTTTGTTGCTCTCAGTCCCCAG gtatgcttggaaggcatgaaggaggcttaaaccttacacacctttttcagATCCCCGTGTTCCAGCGTGGTGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCCTCTTTGTTGCTCTCAGTCCCCAGgtaaagatccagtggatgagggctgacttaattattgactgtcctttacg Alignment from Pairagon ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACT-CTCTTTGTTGCTCTCAGTCCCCAG gtatgcttggaaggcatgaaggaggcttaaaccttacacacctttttcagATCCCCGTGTTCCAGCGTGGTGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCCTCTTTGTTGCTCTCAGTCCCCAGgtaaagatccagtggatgagggctgacttaattattgactgtcctttacg Alignment from Exonerate_protein2genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACT-CTCTTTGTTGCTCTCAGTCCCCAG gtatgcttggaaggcatgaaggaggcttaaaccttacacacctttttcagATCCCCGTGTTCCAGCGTGGTGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCCTCTTTGTTGCTCTCAGTCCCCAGgtaaagatccagtggatgagggctgacttaattattgactgtcctttacg Alignment from Exonerate_coding2genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACT-CTCTTTGTTGCTCTCAGTCCCCAG gtatgcttggaaggcatgaaggaggcttaaaccttacacacctttttcagATCCCCGTGTTCCAGCGTGGTGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCCTCTTTGTTGCTCTCAGTCCCCAGgtaaagatccagtggatgagggctgacttaattattgactgtcctttacg Alignment from GeneWise ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTT- gtatgcttggaaggcatgaaggaggcttaaaccttacacacctttttcagATCCCCGTGTTCCAGCGTGGTGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCCCTTCAGACTGTATGAAGGATGATCCTATCACTCCTCTTTgttgctctcagtccccaggtaaagatccagtggatgagggctgacttaattattgactgtcctttacg #### Gbf1_ID9795_14 --> 0 - 1 Original Alignment AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTG-TCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGt agatgaagtatattcctaccacaagtattcctggcccacctctcccacagAATGCCTTTCCTGTATCTGGTCAGCTCTATACTACACACCTTCTGCTCTCTTGATGCCCTTTTGACATTTATTGACAGCACTGAGTCTCATTCTCAGGCCAAAGTTCTCAATACCCTCAACCAGCAAGAGAAAAAAGAGACACCTAGGCCTGGTTTTGAGGCAGTGGATGGCAACCCAGATGCTAACAAGtgtgagacatcttatgctgttcttattattgttcttttttgtccatactcc Alignment from CESAR AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTG-TCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGt agatgaagtatattcctaccacaagtattcctggcccacctctcccacagAATGCCTTTCCTGTATCTGGTCAGCTCTATACTACACACCTTCTGCTCTCTTGATGCCCTTTTGACATTTATTGACAGCACTGAGTCTCATTCTCAGGCCAAAGTTCTCAATACCCTCAACCAGCAAGAGAAAAAAGAGACACCTAGGCCTGGTTTTGAGGCAGTGGATGGCAACCCAGATGCTAACAAGtgtgagacatcttatgctgttcttattattgttcttttttgtccatactcc Alignment from Spaln_aa2Genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTG-TCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT agatgaagtatattcctaccacaagtattcctggcccacctctcccacagAATGCCTTTCCTGTATCTGGTCAGCTCTATACTACACACCTTCTGcTCTCTTGATGCCCTTTTGACATTTATTGACAGCACTGAGTCTCATTCTCAGGCCAAAGTTCTCAATACCCTCAACCAGCAAGAGAAAAAAGAGACACCTAGGCCTGGTTTTGAGGCAGTGGATGGCAACCCAGATGCTAACAAGTgtgagacatcttatgctgttcttattattgttcttttttgtccatactcc Alignment from Spaln_nt2Genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTG-TCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT agatgaagtatattcctaccacaagtattcctggcccacctctcccacagAATGCCTTTCCTGTATCTGGTCAGCTCTATACTACACACCTTCTGCTCTCTTGATGCCCTTTTGACATTTATTGACAGCACTGAGTCTCATTCTCAGGCCAAAGTTCTCAATACCCTCAACCAGCAAGAGAAAAAAGAGACACCTAGGCCTGGTTTTGAGGCAGTGGATGGCAACCCAGATGCTAACAAGTgtgagacatcttatgctgttcttattattgttcttttttgtccatactcc Alignment from Pairagon AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTG-TCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT agatgaagtatattcctaccacaagtattcctggcccacctctcccacagAATGCCTTTCCTGTATCTGGTCAGCTCTATACTACACACCTTCTGCTCTCTTGATGCCCTTTTGACATTTATTGACAGCACTGAGTCTCATTCTCAGGCCAAAGTTCTCAATACCCTCAACCAGCAAGAGAAAAAAGAGACACCTAGGCCTGGTTTTGAGGCAGTGGATGGCAACCCAGATGCTAACAAGTgtgagacatcttatgctgttcttattattgttcttttttgtccatactcc Alignment from Exonerate_protein2genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTG-TCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT agatgaagtatattcctaccacaagtattcctggcccacctctcccacagAATGCCTTTCCTGTATCTGGTCAGCTCTATACTACACACCTTCTGCTCTCTTGATGCCCTTTTGACATTTATTGACAGCACTGAGTCTCATTCTCAGGCCAAAGTTCTCAATACCCTCAACCAGCAAGAGAAAAAAGAGACACCTAGGCCTGGTTTTGAGGCAGTGGATGGCAACCCAGATGCTAACAAGTgtgagacatcttatgctgttcttattattgttcttttttgtccatactcc Alignment from Exonerate_coding2genome AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTG-TCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT agatgaagtatattcctaccacaagtattcctggcccacctctcccacagAATGCCTTTCCTGTATCTGGTCAGCTCTATACTACACACCTTCTGCTCTCTTGATGCCCTTTTGACATTTATTGACAGCACTGAGTCTCATTCTCAGGCCAAAGTTCTCAATACCCTCAACCAGCAAGAGAAAAAAGAGACACCTAGGCCTGGTTTTGAGGCAGTGGATGGCAACCCAGATGCTAACAAGTgtgagacatcttatgctgttcttattattgttcttttttgtccatactcc Alignment from GeneWise AATGCCTTTCCTGTGTCTGGTCAGCTTTATACAACACACCTGCTG-TCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT agatgaagtatattcctaccacaagtattcctggcccacctctcccacagAATGCCTTTCCTGTATCTGGTCAGCTCTATACTACACACCTTCTGCTCTCTTGATGCCCTTTTGACATTTATTGACAGCACTGAGTCTCATTCTCAGGCCAAAGTTCTCAATACCCTCAACCAGCAAGAGAAAAAAGAGACACCTAGGCCTGGTTTTGAGGCAGTGGATGGCAACCCAGATGCTAACAAGTgtgagacatcttatgctgttcttattattgttcttttttgtccatactcc #### Gbf1_ID9796_15 --> 2 - 1 Original Alignment ctGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGA-GGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGg atcaccagccataagttttcggtcagtcgggctcctcctgcctcttgcagctGAGAGAGCAACCAGTGATGGGAAATCCACGGGGGTGGCCTTAGATGCCCGACGGCCTTCATTTTCCAAGTGGAGGGTGGTTGTCAACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCGGGTGACTCTAGTagtgccaatgtccagtgtattgactctaactgaacctcccagtcccctcaa Alignment from CESAR ctGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGA-GGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGg atcaccagccataagttttcggtcagtcgggctcctcctgcctcttgcagctGAGAGAGCAACCAGTGATGGGAAATCCACGGGGGTGGCCTTAGATGCCCGACGGCCTTCATTTTCCAAGTGGAGGGTGGTTGTCAACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCGGGTGACTCTAGTagtgccaatgtccagtgtattgactctaactgaacctcccagtcccctcaa Alignment from Spaln_aa2Genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGA-GGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccataagttttcggtcagtcgggctcctcctgcctcttgcagCTGAGAGAGCAACCAGTGATGGGAAATCCACGGGGGTGGCCTTAGATGCCCGAcGGCCTTCATTTTCCAAGTGGAGGGTGGTTGTCAACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCGGGTGACTCTAGTAgtgccaatgtccagtgtattgactctaactgaacctcccagtcccctcaa Alignment from Spaln_nt2Genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGA-GGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccataagttttcggtcagtcgggctcctcctgcctcttgcagCTGAGAGAGCAACCAGTGATGGGAAATCCACGGGGGTGGCCTTAGATGCCCGACGGCCTTCATTTTCCAAGTGGAGGGTGGTTGTCAACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCGGGTGACTCTAGTAgtgccaatgtccagtgtattgactctaactgaacctcccagtcccctcaa Alignment from Pairagon CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGA-GGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccataagttttcggtcagtcgggctcctcctgcctcttgcagCTGAGAGAGCAACCAGTGATGGGAAATCCACGGGGGTGGCCTTAGATGCCCGACGGCCTTCATTTTCCAAGTGGAGGGTGGTTGTCAACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCGGGTGACTCTAGTAgtgccaatgtccagtgtattgactctaactgaacctcccagtcccctcaa Alignment from Exonerate_protein2genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGA-GGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccataagttttcggtcagtcgggctcctcctgcctcttgcagCTGAGAGAGCAACCAGTGATGGGAAATCCACGGGGGTGGCCTTAGATGCCCGACGGCCTTCATTTTCCAAGTGGAGGGTGGTTGTCAACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCGGGTGACTCTAGTAgtgccaatgtccagtgtattgactctaactgaacctcccagtcccctcaa Alignment from Exonerate_coding2genome CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGA-GGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccataagttttcggtcagtcgggctcctcctgcctcttgcagCTGAGAGAGCAACCAGTGATGGGAAATCCACGGGGGTGGCCTTAGATGCCCGACGGCCTTCATTTTCCAAGTGGAGGGTGGTTGTCAACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCGGGTGACTCTAGTAgtgccaatgtccagtgtattgactctaactgaacctcccagtcccctcaa Alignment from GeneWise CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCC-CGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccataagttttcggtcagtcgggctcctcctgcctcttgcagCTGAGAGAGCAACCAGTGATGGGAAATCCACGGGGGTGGCCTTAGATGCCCGACGGCCTTCATTTTCCAAGTGGAGGGTGGTTGTCAACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCGGGTGACTCTAGTAgtgccaatgtccagtgtattgactctaactgaacctcccagtcccctcaa #### Gbf1_ID9797_16 --> 2 - 0 Original Alignment ctGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTT-CTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG tcagcaactgtaaaacattttgtgtattcttgtcctcttctttgtaatagctGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtaagggaagtgaatccatatggacctcaagtggtttgtcccctctagaa Alignment from CESAR ctGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTT-CTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG tcagcaactgtaaaacattttgtgtattcttgtcctcttctttgtaatagctGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtaagggaagtgaatccatatggacctcaagtggtttgtcccctctagaa Alignment from Spaln_aa2Genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTT-CTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG tcagcaactgtaaaacattttgtgtattcttgtcctcttctttgtaatagCTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCcCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtaagggaagtgaatccatatggacctcaagtggtttgtcccctctagaa Alignment from Spaln_nt2Genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTC-TGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG tcagcaactgtaaaacattttgtgtattcttgtcctcttctttgtaatagCTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtaagggaagtgaatccatatggacctcaagtggtttgtcccctctagaa Alignment from Pairagon CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCT-TCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG tcagcaactgtaaaacattttgtgtattcttgtcctcttctttgtaatagCTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtaagggaagtgaatccatatggacctcaagtggtttgtcccctctagaa Alignment from Exonerate_protein2genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTT-CTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG tcagcaactgtaaaacattttgtgtattcttgtcctcttctttgtaatagCTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtaagggaagtgaatccatatggacctcaagtggtttgtcccctctagaa Alignment from Exonerate_coding2genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTT-CTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG tcagcaactgtaaaacattttgtgtattcttgtcctcttctttgtaatagCTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtaagggaagtgaatccatatggacctcaagtggtttgtcccctctagaa Alignment from GeneWise CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTT-CTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG tcagcaactgtaaaacattttgtgtattcttgtcctcttctttgtaatagCTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtaagggaagtgaatccatatggacctcaagtggtttgtcccctctagaa #### Gbf1_ID9799_18 --> 1 - 0 Original Alignment cACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTC-CGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG ctgttcattgtttcaaacctccgcaagttttgctcatcttctccatctagtACCTTCAGCTTTCAAGGCCTGCGGCTTGATGAAGCTCTTCGACTCTACCTTGAAGCCTTCCCGTTTGCCTGGGGAAGCCCCCCTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGGgtatgcaacactggagaattaattgtaatgtaagaaacactagcacagaa Alignment from CESAR cACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTC-CGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG ctgttcattgtttcaaacctccgcaagttttgctcatcttctccatctagtACCTTCAGCTTTCAAGGCCTGCGGCTTGATGAAGCTCTTCGACTCTACCTTGAAGCCTTCCCGTTTGCCTGGGGAAGCCCCCCTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGGgtatgcaacactggagaattaattgtaatgtaagaaacactagcacagaa Alignment from Spaln_aa2Genome CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTC-CGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG ctgttcattgtttcaaacctccgcaagttttgctcatcttctccatctagTACCTTCAGCTTTCAAGGCCTGCGGCTTGATGAAGCTCTTCGACTCTACCTTGAAGCCTTCcCGTTTGCCTGGGGAAGCCCCCCTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGGgtatgcaacactggagaattaattgtaatgtaagaaacactagcacagaa Alignment from Spaln_nt2Genome CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTT-CCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG ctgttcattgtttcaaacctccgcaagttttgctcatcttctccatctagTACCTTCAGCTTTCAAGGCCTGCGGCTTGATGAAGCTCTTCGACTCTACCTTGAAGCCTTCCCGTTTGCCTGGGGAAGCCCCCCTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGGgtatgcaacactggagaattaattgtaatgtaagaaacactagcacagaa Alignment from Pairagon CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTT-CCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG ctgttcattgtttcaaacctccgcaagttttgctcatcttctccatctagTACCTTCAGCTTTCAAGGCCTGCGGCTTGATGAAGCTCTTCGACTCTACCTTGAAGCCTTCCCGTTTGCCTGGGGAAGCCCCCCTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGGgtatgcaacactggagaattaattgtaatgtaagaaacactagcacagaa Alignment from Exonerate_protein2genome CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTC-CGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG ctgttcattgtttcaaacctccgcaagttttgctcatcttctccatctagTACCTTCAGCTTTCAAGGCCTGCGGCTTGATGAAGCTCTTCGACTCTACCTTGAAGCCTTCCCGTTTGCCTGGGGAAGCCCCCCTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGGgtatgcaacactggagaattaattgtaatgtaagaaacactagcacagaa Alignment from Exonerate_coding2genome CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTC-CGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG ctgttcattgtttcaaacctccgcaagttttgctcatcttctccatctagTACCTTCAGCTTTCAAGGCCTGCGGCTTGATGAAGCTCTTCGACTCTACCTTGAAGCCTTCCCGTTTGCCTGGGGAAGCCCCCCTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGGgtatgcaacactggagaattaattgtaatgtaagaaacactagcacagaa Alignment from GeneWise CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTC-CGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG ctgttcattgtttcaaacctccgcaagttttgctcatcttctccatctagTACCTTCAGCTTTCAAGGCCTGCGGCTTGATGAAGCTCTTCGACTCTACCTTGAAGCCTTCCCGTTTGCCTGGGGAAGCCCCCCTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGGgtatgcaacactggagaattaattgtaatgtaagaaacactagcacagaa #### Gbf1_ID9803_22 --> 1 - 0 Original Alignment gAAGTGTGCCATGATCTCC-GCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctagtggactttcagtgactgtttcctgttcctcttgccttggccaggAAGTGTGCCACGATCTCTCGCCCACTATGGCCTCAGCGATGTCTTTGACAATCTGATCATTTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtaagttggaacaggaacactggttagaggagaatgaacctcttcctccc Alignment from CESAR gAAGTGTGCCATGATCTCC-GCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctagtggactttcagtgactgtttcctgttcctcttgccttggccaggAAGTGTGCCACGATCTCTCGCCCACTATGGCCTCAGCGATGTCTTTGACAATCTGATCATTTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtaagttggaacaggaacactggttagaggagaatgaacctcttcctccc Alignment from Spaln_aa2Genome GAAGTGTGCCATGATCTCC-GCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctagtggactttcagtgactgtttcctgttcctcttgccttggccagGAAGTGTGCCACGATCTCTcGCCCACTATGGCCTCAGCGATGTCTTTGACAATCTGATCATTTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtaagttggaacaggaacactggttagaggagaatgaacctcttcctccc Alignment from Spaln_nt2Genome GAAGTGTGCCATGATCTC-CGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctagtggactttcagtgactgtttcctgttcctcttgccttggccagGAAGTGTGCCACGATCTCTCGCCCACTATGGCCTCAGCGATGTCTTTGACAATCTGATCATTTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtaagttggaacaggaacactggttagaggagaatgaacctcttcctccc Alignment from Pairagon GAAGTGTGCCATGATCTC-CGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctagtggactttcagtgactgtttcctgttcctcttgccttggccagGAAGTGTGCCACGATCTCTCGCCCACTATGGCCTCAGCGATGTCTTTGACAATCTGATCATTTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtaagttggaacaggaacactggttagaggagaatgaacctcttcctccc Alignment from Exonerate_protein2genome GAAGTGTGCCATGATCTCC-GCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctagtggactttcagtgactgtttcctgttcctcttgccttggccagGAAGTGTGCCACGATCTCTCGCCCACTATGGCCTCAGCGATGTCTTTGACAATCTGATCATTTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtaagttggaacaggaacactggttagaggagaatgaacctcttcctccc Alignment from Exonerate_coding2genome GAAGTGTGCCATGATCTCC-GCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctagtggactttcagtgactgtttcctgttcctcttgccttggccagGAAGTGTGCCACGATCTCTCGCCCACTATGGCCTCAGCGATGTCTTTGACAATCTGATCATTTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtaagttggaacaggaacactggttagaggagaatgaacctcttcctccc Alignment from GeneWise GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctagtggactttcagtgactgtttcctgttcctcttgccttggccaggaagTGTGCCACGATCTCTC---GCCCACTATGGCCTCAGCGATGTCTTTGACAATCTGATCATTTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtaagttggaacaggaacactggttagaggagaatgaacctcttcctccc #### Gbf1_ID9807_26 --> 0 - 0 Original Alignment CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTC-CTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcacggatctttctttccctcccttttgtagCAATGTGACCCAGAAAAGATGATCACAGAAAGCAAGTTCCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAGgtgagttatgaacagatctgagaaaggcagaatggtgctggtgcagtgca Alignment from CESAR CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTC-CTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcacggatctttctttccctcccttttgtagCAATGTGACCCAGAAAAGATGATCACAGAAAGCAAGTTCCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAGgtgagttatgaacagatctgagaaaggcagaatggtgctggtgcagtgca Alignment from Spaln_aa2Genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTC-CTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcacggatctttctttccctcccttttgtagCAATGTGACCCAGAAAAGATGATCACAGAAAGCAAGTTCcCTCCAGCTGGAATCACTGCAGGAGCTCATGAAGgtgagttatgaacagatctgagaaaggcagaatggtgctggtgcagtgca Alignment from Spaln_nt2Genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTT-CCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcacggatctttctttccctcccttttgtagCAATGTGACCCAGAAAAGATGATCACAGAAAGCAAGTTCCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAGgtgagttatgaacagatctgagaaaggcagaatggtgctggtgcagtgca Alignment from Pairagon CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTT-CCTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcacggatctttctttccctcccttttgtagCAATGTGACCCAGAAAAGATGATCACAGAAAGCAAGTTCCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAGgtgagttatgaacagatctgagaaaggcagaatggtgctggtgcagtgca Alignment from Exonerate_protein2genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTC-CTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcacggatctttctttccctcccttttgtagCAATGTGACCCAGAAAAGATGATCACAGAAAGCAAGTTCCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAGgtgagttatgaacagatctgagaaaggcagaatggtgctggtgcagtgca Alignment from Exonerate_coding2genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTC-CTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcacggatctttctttccctcccttttgtagCAATGTGACCCAGAAAAGATGATCACAGAAAGCAAGTTCCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAGgtgagttatgaacagatctgagaaaggcagaatggtgctggtgcagtgca Alignment from GeneWise CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTC-CTCCAGCTGGAATCACTGCAGGAGCTCATGAAG cctgaactttcttcctttgtcacggatctttctttccctcccttttgtagCAATGTGACCCAGAAAAGATGATCACAGAAAGCAAGTTCCCTCCAGCTGGAATCACTGCAGGAGCTCATGAAGgtgagttatgaacagatctgagaaaggcagaatggtgctggtgcagtgca #### Gbf1_ID9812_31 --> 0 - 1 Original Alignment GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACAC-GACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTg tatgtctggctgggaaatgggccctagcttatatctgctattaattttagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGGGCCCACATCGACACTAAGTCCCTACTCAAGTGTGTAGAGTCACTGTCCTTCATTGTTCGAGATGCTGCCCACATCACACCTGACAACTTTGAACTCTGTGTCAAGACCCTCCGCATCTTTGTAGAAGCCAGTCTGAATGATggtaagttatctgtatgagggacaatcagggagtgggtcaagtgaggggtg Alignment from CESAR GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACAC-GACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTg tatgtctggctgggaaatgggccctagcttatatctgctattaattttagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGGGCCCACATCGACACTAAGTCCCTACTCAAGTGTGTAGAGTCACTGTCCTTCATTGTTCGAGATGCTGCCCACATCACACCTGACAACTTTGAACTCTGTGTCAAGACCCTCCGCATCTTTGTAGAAGCCAGTCTGAATGATggtaagttatctgtatgagggacaatcagggagtgggtcaagtgaggggtg Alignment from Spaln_aa2Genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACAC-GACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG tatgtctggctgggaaatgggccctagcttatatctgctattaattttagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGGGCCCACATcGACACTAAGTCCCTACTCAAGTGTGTAGAGTCACTGTCCTTCATTGTTCGAGATGCTGCCCACATCACACCTGACAACTTTGAACTCTGTGTCAAGACCCTCCGCATCTTTGTAGAAGCCAGTCTGAATGATGgtaagttatctgtatgagggacaatcagggagtgggtcaagtgaggggtg Alignment from Spaln_nt2Genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACA-CGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG tatgtctggctgggaaatgggccctagcttatatctgctattaattttagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGGGCCCACATCGACACTAAGTCCCTACTCAAGTGTGTAGAGTCACTGTCCTTCATTGTTCGAGATGCTGCCCACATCACACCTGACAACTTTGAACTCTGTGTCAAGACCCTCCGCATCTTTGTAGAAGCCAGTCTGAATGATGgtaagttatctgtatgagggacaatcagggagtgggtcaagtgaggggtg Alignment from Pairagon GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACA-CGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG tatgtctggctgggaaatgggccctagcttatatctgctattaattttagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGGGCCCACATCGACACTAAGTCCCTACTCAAGTGTGTAGAGTCACTGTCCTTCATTGTTCGAGATGCTGCCCACATCACACCTGACAACTTTGAACTCTGTGTCAAGACCCTCCGCATCTTTGTAGAAGCCAGTCTGAATGATGgtaagttatctgtatgagggacaatcagggagtgggtcaagtgaggggtg Alignment from Exonerate_protein2genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACAC-GACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG tatgtctggctgggaaatgggccctagcttatatctgctattaattttagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGGGCCCACATCGACACTAAGTCCCTACTCAAGTGTGTAGAGTCACTGTCCTTCATTGTTCGAGATGCTGCCCACATCACACCTGACAACTTTGAACTCTGTGTCAAGACCCTCCGCATCTTTGTAGAAGCCAGTCTGAATGATGgtaagttatctgtatgagggacaatcagggagtgggtcaagtgaggggtg Alignment from Exonerate_coding2genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACAC-GACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG tatgtctggctgggaaatgggccctagcttatatctgctattaattttagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGGGCCCACATCGACACTAAGTCCCTACTCAAGTGTGTAGAGTCACTGTCCTTCATTGTTCGAGATGCTGCCCACATCACACCTGACAACTTTGAACTCTGTGTCAAGACCCTCCGCATCTTTGTAGAAGCCAGTCTGAATGATGgtaagttatctgtatgagggacaatcagggagtgggtcaagtgaggggtg Alignment from GeneWise GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACAC-GACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG tatgtctggctgggaaatgggccctagcttatatctgctattaattttagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGAGCAGGGCTCAGTAGGCCAGGTCCTTCACCCCTGGTCAACCAGTATAGCCTTACAGTGGGCCTTGATCTGGGCCCACATCGACACTAAGTCCCTACTCAAGTGTGTAGAGTCACTGTCCTTCATTGTTCGAGATGCTGCCCACATCACACCTGACAACTTTGAACTCTGTGTCAAGACCCTCCGCATCTTTGTAGAAGCCAGTCTGAATGATGgtaagttatctgtatgagggacaatcagggagtgggtcaagtgaggggtg #### Gbf1_ID9818_37 --> 0 - 1 Original Alignment TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGG-GAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGg gcctccattttaaagcactactcctctttggggggtggttctcattgcagTCAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACATGGCGAGCGCATTGTCTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGggtaagggcacatttgatcccaactcctctgttcactgtactaagaattat Alignment from CESAR TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGG-GAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGg gcctccattttaaagcactactcctctttggggggtggttctcattgcagTCAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACATGGCGAGCGCATTGTCTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGggtaagggcacatttgatcccaactcctctgttcactgtactaagaattat Alignment from Spaln_aa2Genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGG-GAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcctccattttaaagcactactcctctttggggggtggttctcattgcagTCAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACATGGcGAGCGCATTGTCTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGGgtaagggcacatttgatcccaactcctctgttcactgtactaagaattat Alignment from Spaln_nt2Genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGG-GAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcctccattttaaagcactactcctctttggggggtggttctcattgcagTCAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACATGGCGAGCGCATTGTCTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGGgtaagggcacatttgatcccaactcctctgttcactgtactaagaattat Alignment from Pairagon TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGG-GAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcctccattttaaagcactactcctctttggggggtggttctcattgcagTCAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACATGGCGAGCGCATTGTCTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGGgtaagggcacatttgatcccaactcctctgttcactgtactaagaattat Alignment from Exonerate_protein2genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGG-GAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcctccattttaaagcactactcctctttggggggtggttctcattgcagTCAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACATGGCGAGCGCATTGTCTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGGgtaagggcacatttgatcccaactcctctgttcactgtactaagaattat Alignment from Exonerate_coding2genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGG-GAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcctccattttaaagcactactcctctttggggggtggttctcattgcagTCAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACATGGCGAGCGCATTGTCTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGGgtaagggcacatttgatcccaactcctctgttcactgtactaagaattat Alignment from GeneWise TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGG-GAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcctccattttaaagcactactcctctttggggggtggttctcattgcagTCAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACATGGCGAGCGCATTGTCTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGGgtaagggcacatttgatcccaactcctctgttcactgtactaagaattat #### Gbf1_ID9819_38 --> 2 - 1 Original Alignment acCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGGATG-CCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTg cagggtgaagaaagaaacacccagagttttttactttgtgtttatttcagacCCAATGCCTGCTGAACCACATAGTCAAAAGCCT---GCATCCACTCACCTAACTTCTGCTGCTGGTGACCCCAGGATGCCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTggtttggtactctaagcacaactcgaagaagtctaagcaacgtccaatgca Alignment from CESAR acCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGGATG-CCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTg cagggtgaagaaagaaacacccagagttttttactttgtgtttatttcagacCCAATGCCTGCTGAACCACATAGTCAAAAGCCT---GCATCCACTCACCTAACTTCTGCTGCTGGTGACCCCAGGATGCCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTggtttggtactctaagcacaactcgaagaagtctaagcaacgtccaatgca Alignment from Spaln_aa2Genome ACCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGGATGCCT-GGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTG cagggtgaagaaagaaacacccagagttttttactttgtgtttatttcagACCCAATGCCTGCTGAACCACATAGTCAAAAGCCT---GCATCCACTCACCTAACTTCTGCTGCTGGTGACCCCAGGATGCCCtGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTGgtttggtactctaagcacaactcgaagaagtctaagcaacgtccaatgca Alignment from Spaln_nt2Genome ACCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGGATG-CCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTG cagggtgaagaaagaaacacccagagttttttactttgtgtttatttcagACCCAATGCCTGCTGAACCACATAGTCAAAAGCCT---GCATCCACTCACCTAACTTCTGCTGCTGGTGACCCCAGGATGCCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTGgtttggtactctaagcacaactcgaagaagtctaagcaacgtccaatgca Alignment from Pairagon ACCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGGATG-CCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTG cagggtgaagaaagaaacacccagagttttttactttgtgtttatttcagACCCAATGCCTGCTGAACCACATAGTCAAAAGCCT---GCATCCACTCACCTAACTTCTGCTGCTGGTGACCCCAGGATGCCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTGgtttggtactctaagcacaactcgaagaagtctaagcaacgtccaatgca Alignment from Exonerate_protein2genome ACCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGGATG-CCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTG cagggtgaagaaagaaacacccagagttttttactttgtgtttatttcagACCCAATGCCTGCTGAACCACATAGTCAAAAGCCT---GCATCCACTCACCTAACTTCTGCTGCTGGTGACCCCAGGATGCCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTGgtttggtactctaagcacaactcgaagaagtctaagcaacgtccaatgca Alignment from Exonerate_coding2genome ACCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGGATG-CCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTG cagggtgaagaaagaaacacccagagttttttactttgtgtttatttcagACCCAATGCCTGCTGAACCACATAGTCAAAAGCCT---GCATCCACTCACCTAACTTCTGCTGCTGGTGACCCCAGGATGCCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTGgtttggtactctaagcacaactcgaagaagtctaagcaacgtccaatgca Alignment from GeneWise ACCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCTGGTGACCCCAGG-ATGCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTG cagggtgaagaaagaaacacccagagttttttactttgtgtttatttcagACCCAATGCCTGCTGAACCACATAGTCAAAAGCCT---GCATCCACTCACCTAACTTCTGCTGCTGGTGACCCCAGGATGCCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGTTTGTGgtttggtactctaagcacaactcgaagaagtctaagcaacgtccaatgca #### Gldc_ID6402_13 --> 1 - 0 Original Alignment cTATCACTCAGAAACTAAT-CTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtacaaggactggcttaactcttgtttattttttttttttccataaacagtTATCACTCAGAAACCAATCCTTGTCCGTTACATGAAGAGACTGGAGAACCAAGACATCTCCCTTGTGCACAGTATGATCCCACTGgtaagcgtgtgactggctagccatatacaccggtaagtcaaattcaatgc Alignment from CESAR cTATCACTCAGAAACTAAT-CTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtacaaggactggcttaactcttgtttattttttttttttccataaacagtTATCACTCAGAAACCAATCCTTGTCCGTTACATGAAGAGACTGGAGAACCAAGACATCTCCCTTGTGCACAGTATGATCCCACTGgtaagcgtgtgactggctagccatatacaccggtaagtcaaattcaatgc Alignment from Spaln_aa2Genome CTATCACTCAGAAACTAAT-CTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtacaaggactggcttaactcttgtttattttttttttttccataaacagTTATCACTCAGAAACCAATcCTTGTCCGTTACATGAAGAGACTGGAGAACCAAGACATCTCCCTTGTGCACAGTATGATCCCACTGgtaagcgtgtgactggctagccatatacaccggtaagtcaaattcaatgc Alignment from Spaln_nt2Genome CTATCACTCAGAAACTAATC-TTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtacaaggactggcttaactcttgtttattttttttttttccataaacagTTATCACTCAGAAACCAATCCTTGTCCGTTACATGAAGAGACTGGAGAACCAAGACATCTCCCTTGTGCACAGTATGATCCCACTGgtaagcgtgtgactggctagccatatacaccggtaagtcaaattcaatgc Alignment from Pairagon CTATCACTCAGAAACTAAT-CTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtacaaggactggcttaactcttgtttattttttttttttccataaacagTTATCACTCAGAAACCAATCCTTGTCCGTTACATGAAGAGACTGGAGAACCAAGACATCTCCCTTGTGCACAGTATGATCCCACTGgtaagcgtgtgactggctagccatatacaccggtaagtcaaattcaatgc Alignment from Exonerate_protein2genome CTATCACTCAGAAACTAAT-CTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtacaaggactggcttaactcttgtttattttttttttttccataaacagTTATCACTCAGAAACCAATCCTTGTCCGTTACATGAAGAGACTGGAGAACCAAGACATCTCCCTTGTGCACAGTATGATCCCACTGgtaagcgtgtgactggctagccatatacaccggtaagtcaaattcaatgc Alignment from Exonerate_coding2genome CTATCACTCAGAAACTAAT-CTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtacaaggactggcttaactcttgtttattttttttttttccataaacagTTATCACTCAGAAACCAATCCTTGTCCGTTACATGAAGAGACTGGAGAACCAAGACATCTCCCTTGTGCACAGTATGATCCCACTGgtaagcgtgtgactggctagccatatacaccggtaagtcaaattcaatgc Alignment from GeneWise CTATCACTCAGAAACTAAT-CTTGTCCGGTATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gtacaaggactggcttaactcttgtttattttttttttttccataaacagTTATCACTCAGAAACCAATCCTTGTCCGTTACATGAAGAGACTGGAGAACCAAGACATCTCCCTTGTGCACAGTATGATCCCACTGgtaagcgtgtgactggctagccatatacaccggtaagtcaaattcaatgc #### Gpam_ID11538_11 --> 0 - 2 Original Alignment GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGCC-CCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAag attccatattttcgagttaaggattgttaactgttgttattttactgcagGAATACTTAGAAGGCCAGGGTCAGAAGCCTGTGTCTGCCCCCCCTTTCTCTGGAGCAAGCACTATTACCAGCAATCCTTCCTTCAaggtaagtgtgagtacctgtgggactcagctatcccctaacctgtgtgcttg Alignment from CESAR GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGCCCCC-CTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAag attccatattttcgagttaaggattgttaactgttgttattttactgcagGAATACTTAGAAGGCCAGGGTCAGAAGCCTGTGTCTGCCCCCCCTTTCTCTGGAGCAAGCACTATTACCAGCAATCCTTCCTTCAaggtaagtgtgagtacctgtgggactcagctatcccctaacctgtgtgcttg Alignment from Spaln_aa2Genome GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGCC-CCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG attccatattttcgagttaaggattgttaactgttgttattttactgcagGAATACTTAGAAGGCCAGGGTCAGAAGCCTGTGTCTGCCcCCCCTTTCTCTGGAGCAAGCACTATTACCAGCAATCCTTCCTTCAAGgtaagtgtgagtacctgtgggactcagctatcccctaacctgtgtgcttg Alignment from Spaln_nt2Genome GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGCCCCCC-TTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG attccatattttcgagttaaggattgttaactgttgttattttactgcagGAATACTTAGAAGGCCAGGGTCAGAAGCCTGTGTCTGCCCCCCCTTTCTCTGGAGCAAGCACTATTACCAGCAATCCTTCCTTCAAGgtaagtgtgagtacctgtgggactcagctatcccctaacctgtgtgcttg Alignment from Pairagon GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTG-CCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG attccatattttcgagttaaggattgttaactgttgttattttactgcagGAATACTTAGAAGGCCAGGGTCAGAAGCCTGTGTCTGCCCCCCCTTTCTCTGGAGCAAGCACTATTACCAGCAATCCTTCCTTCAAGgtaagtgtgagtacctgtgggactcagctatcccctaacctgtgtgcttg Alignment from Exonerate_protein2genome GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGCC-CCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG attccatattttcgagttaaggattgttaactgttgttattttactgcagGAATACTTAGAAGGCCAGGGTCAGAAGCCTGTGTCTGCCCCCCCTTTCTCTGGAGCAAGCACTATTACCAGCAATCCTTCCTTCAAGgtaagtgtgagtacctgtgggactcagctatcccctaacctgtgtgcttg Alignment from Exonerate_coding2genome GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGCC-CCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG attccatattttcgagttaaggattgttaactgttgttattttactgcagGAATACTTAGAAGGCCAGGGTCAGAAGCCTGTGTCTGCCCCCCCTTTCTCTGGAGCAAGCACTATTACCAGCAATCCTTCCTTCAAGgtaagtgtgagtacctgtgggactcagctatcccctaacctgtgtgcttg Alignment from GeneWise GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCT-GCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG attccatattttcgagttaaggattgttaactgttgttattttactgcagGAATACTTAGAAGGCCAGGGTCAGAAGCCTGTGTCTGCCCCCCCTTTCTCTGGAGCAAGCACTATTACCAGCAATCCTTCCTTCAAGgtaagtgtgagtacctgtgggactcagctatcccctaacctgtgtgcttg #### Gpr137_ID1885_6 --> 0 - 2 Original Alignment AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCT-GGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCag ttatagcagcagaagaatagtgctacagtccatttccttgtcatttgcagAGCACCAGTCGAATCCTCAATGGGCAGGTTTTCGGCTCCCGATCCTACTTCTTTGACAGGGCTCGGACACTGTGAGGATGATGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCaggtgagatctttgacagggctggccactgtgaggatgatggatgctcctgg Alignment from CESAR AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCT-GGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCag ttatagcagcagaagaatagtgctacagtccatttccttgtcatttgcagAGCACCAGTCGAATCCTCAATGGGCAGGTTTTCGGCTCCCGATCCTACTTCTTTGACAGGGCTCGGACACTGTGAGGATGATGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCaggtgagatctttgacagggctggccactgtgaggatgatggatgctcctgg Alignment from Spaln_aa2Genome AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCT-------- -GGCCACTGT---GAGGATGAGGGCTGCTCCTGG ttatagcagcagaagaatagtgctacagtccatttccttgtcatttgcagAGCACCAGTCGAATCCTCAATGGGCAGGTTTTCGGCTCCCGATCCTACTTCTTTGACAGGGCTCGGACACTgtgaggatgatggctgctcctgggagcatagccggagtgagagcaccaggtgagatctttgacagGGCTGGCCACTGTGAGGATGATGGATGCTCCTGG Alignment from Spaln_nt2Genome AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCG- GGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGG ttatagcagcagaagaatagtgctacagtccatttccttgtcatttgcagAGCACCAGTCGAATCCTCAATGGGCAGGTTTTCGGCTCCCGATCCTACTTCTTTGACAGGgctcggacactgtgaggatgatggctgctcctgggagcatagccggagtgagagcaccaggtgagatctttgacagGGCTGGCCACTGTGAGGATGATGGATGCTCCTGG Alignment from Pairagon AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCT-GGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG ttatagcagcagaagaatagtgctacagtccatttccttgtcatttgcagAGCACCAGTCGAATCCTCAATGGGCAGGTTTTCGGCTCCCGATCCTACTTCTTTGACAGGGCTCGGACACTGTGAGGATGATGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAGgtgagatctttgacagggctggccactgtgaggatgatggatgctcctgg Alignment from Exonerate_protein2genome AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCT-GGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG ttatagcagcagaagaatagtgctacagtccatttccttgtcatttgcagAGCACCAGTCGAATCCTCAATGGGCAGGTTTTCGGCTCCCGATCCTACTTCTTTGACAGGGCTCGGACACTGTGAGGATGATGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAGgtgagatctttgacagggctggccactgtgaggatgatggatgctcctgg Alignment from Exonerate_coding2genome AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCT-GGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG ttatagcagcagaagaatagtgctacagtccatttccttgtcatttgcagAGCACCAGTCGAATCCTCAATGGGCAGGTTTTCGGCTCCCGATCCTACTTCTTTGACAGGGCTCGGACACTGTGAGGATGATGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAGgtgagatctttgacagggctggccactgtgaggatgatggatgctcctgg Alignment from GeneWise AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGG-GCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG ttatagcagcagaagaatagtgctacagtccatttccttgtcatttgcagAGCACCAGTCGAATCCTCAATGGGCAGGTTTTCGGCTCCCGATCCTACTTCTTTGACAGGGCTCGGACACTGTGAGGATGATGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAGgtgagatctttgacagggctggccactgtgaggatgatggatgctcctgg #### Gpr137_ID1887_4 --> 0 - 0 Original Alignment GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCC-TGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagccctcctctctgtaaagatgtgtctgtttttgacaaaatagGGGACCAGTGTATGTCAGGTGGCTGCCATAGGG---GCCATGGTCCTGCTCTATGCCAGCCGGGCCCTGTTATAACCTGGCAGCCCTGGCCTTAGCACCTCGGAGCCGGCTAGATGCCTTTGATTATGACTGGTACAATGTATCAGACCAGgtgagtactatacagtttatttctggctgaccaagtccttgccatcagct Alignment from CESAR GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCC-TGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagccctcctctctgtaaagatgtgtctgtttttgacaaaatagGGGACCAGTGTATGTCAGGTGGCTGCCATAGGG---GCCATGGTCCTGCTCTATGCCAGCCGGGCCCTGTTATAACCTGGCAGCCCTGGCCTTAGCACCTCGGAGCCGGCTAGATGCCTTTGATTATGACTGGTACAATGTATCAGACCAGgtgagtactatacagtttatttctggctgaccaagtccttgccatcagct Alignment from Spaln_aa2Genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCC-TGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagccctcctctctgtaaagatgtgtctgtttttgacaaaatagGGGACCAGTGTATGTCAGGTGGCTGCCATA---GGGGCCATGGTCCTGCTCTATGCCAGCCGGGCCcTGTTATAACCTGGCAGCCCTGGCCTTAGCACCTCGGAGCCGGCTAGATGCCTTTGATTATGACTGGTACAATGTATCAGACCAGgtgagtactatacagtttatttctggctgaccaagtccttgccatcagct Alignment from Spaln_nt2Genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGG-CCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagccctcctctctgtaaagatgtgtctgtttttgacaaaatagGGGACCAGTGTATGTCAGGTGGCTGCCATAGGG---GCCATGGTCCTGCTCTATGCCAGCCGGGCCCTGTTATAACCTGGCAGCCCTGGCCTTAGCACCTCGGAGCCGGCTAGATGCCTTTGATTATGACTGGTACAATGTATCAGACCAGgtgagtactatacagtttatttctggctgaccaagtccttgccatcagct Alignment from Pairagon GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGG-CCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagccctcctctctgtaaagatgtgtctgtttttgacaaaatagGGGACCAGTGTATGTCAGGTGGCTGCCATAGGG---GCCATGGTCCTGCTCTATGCCAGCCGGGCCCTGTTATAACCTGGCAGCCCTGGCCTTAGCACCTCGGAGCCGGCTAGATGCCTTTGATTATGACTGGTACAATGTATCAGACCAGgtgagtactatacagtttatttctggctgaccaagtccttgccatcagct Alignment from Exonerate_protein2genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCC-TGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagccctcctctctgtaaagatgtgtctgtttttgacaaaatagGGGACCAGTGTATGTCAGGTGGCTGCCATA---GGGGCCATGGTCCTGCTCTATGCCAGCCGGGCCCTGTTATAACCTGGCAGCCCTGGCCTTAGCACCTCGGAGCCGGCTAGATGCCTTTGATTATGACTGGTACAATGTATCAGACCAGgtgagtactatacagtttatttctggctgaccaagtccttgccatcagct Alignment from Exonerate_coding2genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCC-TGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagccctcctctctgtaaagatgtgtctgtttttgacaaaatagGGGACCAGTGTATGTCAGGTGGCTGCCATA---GGGGCCATGGTCCTGCTCTATGCCAGCCGGGCCCTGTTATAACCTGGCAGCCCTGGCCTTAGCACCTCGGAGCCGGCTAGATGCCTTTGATTATGACTGGTACAATGTATCAGACCAGgtgagtactatacagtttatttctggctgaccaagtccttgccatcagct Alignment from GeneWise GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGG-GCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG atctaggagccctcctctctgtaaagatgtgtctgtttttgacaaaatagGGGACCAGTGTATGTCAGGTGGCTGCCATAGGG---GCCATGGTCCTGCTCTATGCCAGCCGGGCCCTGTTATAACCTGGCAGCCCTGGCCTTAGCACCTCGGAGCCGGCTAGATGCCTTTGATTATGACTGGTACAATGTATCAGACCAGgtgagtactatacagtttatttctggctgaccaagtccttgccatcagct #### Gpr137_ID1889_2 --> 0 - 2 Original Alignment GTGGTGTTCAAGGCCAAGGCG-AAGCGTCGGCCAGAGATGAGCCGAGGCtt taggagggtaatctcactggtccaaagacttcctgtctcttttctgccagGTGGTATTCAAGGCCAAAGCTCAGGCGTCGGCCAGAGATGAGCCGAGGCctgtaaagacaatggctcattggcagtgagtaagcccacggctgagataggg Alignment from CESAR GTGGTGTTCAAGGCCAAGGCG-AAGCGTCGGCCAGAGATGAGCCGAGGCtt taggagggtaatctcactggtccaaagacttcctgtctcttttctgccagGTGGTATTCAAGGCCAAAGCTCAGGCGTCGGCCAGAGATGAGCCGAGGCctgtaaagacaatggctcattggcagtgagtaagcccacggctgagataggg Alignment from Spaln_aa2Genome GTGGTGTTCAAGGCCAAGGCG-AAGCGTCGGCCAGAGATGAGCCGAGGCTT taggagggtaatctcactggtccaaagacttcctgtctcttttctgccagGTGGTATTCAAGGCCAAAGCTcAGGCGTCGGCCAGAGATGAGCCGAGGCCTgtaaagacaatggctcattggcagtgagtaagcccacggctgagataggg Alignment from Spaln_nt2Genome GTGGTGTTCAAGGCCAAGGCGAAG-CGTCGGCCAGAGATGAGCCGAGGCTT taggagggtaatctcactggtccaaagacttcctgtctcttttctgccagGTGGTATTCAAGGCCAAAGCTCAGGCGTCGGCCAGAGATGAGCCGAGGCCTgtaaagacaatggctcattggcagtgagtaagcccacggctgagataggg Alignment from Pairagon GTGGTGTTCAAGGCCAAGGC-GAAGCGTCGGCCAGAGATGAGCCGAGGCTT taggagggtaatctcactggtccaaagacttcctgtctcttttctgccagGTGGTATTCAAGGCCAAAGCTCAGGCGTCGGCCAGAGATGAGCCGAGGCCTgtaaagacaatggctcattggcagtgagtaagcccacggctgagataggg Alignment from Exonerate_protein2genome GTGGTGTTCAAGGCCAAGGCG-AAGCGTCGGCCAGAGATGAGCCGAGGCTT taggagggtaatctcactggtccaaagacttcctgtctcttttctgccagGTGGTATTCAAGGCCAAAGCTCAGGCGTCGGCCAGAGATGAGCCGAGGCCTgtaaagacaatggctcattggcagtgagtaagcccacggctgagataggg Alignment from Exonerate_coding2genome GTGGTGTTCAAGGCCAAGGCG-AAGCGTCGGCCAGAGATGAGCCGAGGCTT taggagggtaatctcactggtccaaagacttcctgtctcttttctgccagGTGGTATTCAAGGCCAAAGCTCAGGCGTCGGCCAGAGATGAGCCGAGGCCTgtaaagacaatggctcattggcagtgagtaagcccacggctgagataggg Alignment from GeneWise taggagggtaatctcactggtccaaagacttcctgtctcttttctgccaggtggtattcaaggccaaagctcaggcgtcggccagagatgagccgaggcctgtaaagacaatggctcattggcagtgagtaagcccacggctgagataggg #### Hnrnpul2_ID2400_4 --> 2 - 0 Original Alignment atACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGA-GGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaattgtcttctactgttgtactagatACATCAGATCTTCACTTCCAAATTAGCAAAGACCGTTATGGACGGCCAGCCACTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTCGAAGCTAAGgtgagtcattaatttagactgggacaaagtctactgtctaatttttgact Alignment from CESAR atACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGA-GGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaattgtcttctactgttgtactagatACATCAGATCTTCACTTCCAAATTAGCAAAGACCGTTATGGACGGCCAGCCACTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTCGAAGCTAAGgtgagtcattaatttagactgggacaaagtctactgtctaatttttgact Alignment from Spaln_aa2Genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGA-GGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaattgtcttctactgttgtactagATACATCAGATCTTCACTTCCAAATTAGCAAAGACCGTTATGGAcGGCCAGCCACTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTCGAAGCTAAGgtgagtcattaatttagactgggacaaagtctactgtctaatttttgact Alignment from Spaln_nt2Genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGA-GGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaattgtcttctactgttgtactagATACATCAGATCTTCACTTCCAAATTAGCAAAGACCGTTATGGACGGCCAGCCACTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTCGAAGCTAAGgtgagtcattaatttagactgggacaaagtctactgtctaatttttgact Alignment from Pairagon ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGA-GGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaattgtcttctactgttgtactagATACATCAGATCTTCACTTCCAAATTAGCAAAGACCGTTATGGACGGCCAGCCACTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTCGAAGCTAAGgtgagtcattaatttagactgggacaaagtctactgtctaatttttgact Alignment from Exonerate_protein2genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGA-GGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaattgtcttctactgttgtactagATACATCAGATCTTCACTTCCAAATTAGCAAAGACCGTTATGGACGGCCAGCCACTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTCGAAGCTAAGgtgagtcattaatttagactgggacaaagtctactgtctaatttttgact Alignment from Exonerate_coding2genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGA-GGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaattgtcttctactgttgtactagATACATCAGATCTTCACTTCCAAATTAGCAAAGACCGTTATGGACGGCCAGCCACTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTCGAAGCTAAGgtgagtcattaatttagactgggacaaagtctactgtctaatttttgact Alignment from GeneWise ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGA-GGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactccttggtgttgagtgttgcagtaattgtcttctactgttgtactagATACATCAGATCTTCACTTCCAAATTAGCAAAGACCGTTATGGACGGCCAGCCACTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTCGAAGCTAAGgtgagtcattaatttagactgggacaaagtctactgtctaatttttgact #### Hnrnpul2_ID2408_12 --> 2 - 0 Original Alignment tgGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGG-GGGCAGTCTGGAAACAGAGGG atttgtttatgcatatgcaatgtaaatcgggcacctcctttttcctgcagtgGGTGGGCAGCGCCGAGGCTACGACAACCGGGCCTATGGGCAGCAGTACTGGCGGGCAGTCTGGAAACAGAGGGgtacttgcatgtctccttctactcctccctccgggctgtgaaggatttga Alignment from CESAR tgGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGG-GGGCAGTCTGGAAACAGAGGG atttgtttatgcatatgcaatgtaaatcgggcacctcctttttcctgcagtgGGTGGGCAGCGCCGAGGCTACGACAACCGGGCCTATGGGCAGCAGTACTGGCGGGCAGTCTGGAAACAGAGGGgtacttgcatgtctccttctactcctccctccgggctgtgaaggatttga Alignment from Spaln_aa2Genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGG-GGGCAGTCTGGAAACAGAGGG atttgtttatgcatatgcaatgtaaatcgggcacctcctttttcctgcagTGGGTGGGCAGCGCCGAGGCTACGACAACCGGGCCTATGGGCAGCAGTACTGGcGGGCAGTCTGGAAACAGAGGGgtacttgcatgtctccttctactcctccctccgggctgtgaaggatttga Alignment from Spaln_nt2Genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGG-GGGCAGTCTGGAAACAGAGGG atttgtttatgcatatgcaatgtaaatcgggcacctcctttttcctgcagTGGGTGGGCAGCGCCGAGGCTACGACAACCGGGCCTATGGGCAGCAGTACTGGCGGGCAGTCTGGAAACAGAGGGgtacttgcatgtctccttctactcctccctccgggctgtgaaggatttga Alignment from Pairagon TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGG-GGGCAGTCTGGAAACAGAGGG atttgtttatgcatatgcaatgtaaatcgggcacctcctttttcctgcagTGGGTGGGCAGCGCCGAGGCTACGACAACCGGGCCTATGGGCAGCAGTACTGGCGGGCAGTCTGGAAACAGAGGGgtacttgcatgtctccttctactcctccctccgggctgtgaaggatttga Alignment from Exonerate_protein2genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGG-GGGCAGTCTGGAAACAGAGGG atttgtttatgcatatgcaatgtaaatcgggcacctcctttttcctgcagTGGGTGGGCAGCGCCGAGGCTACGACAACCGGGCCTATGGGCAGCAGTACTGGCGGGCAGTCTGGAAACAGAGGGgtacttgcatgtctccttctactcctccctccgggctgtgaaggatttga Alignment from Exonerate_coding2genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGG-GGGCAGTCTGGAAACAGAGGG atttgtttatgcatatgcaatgtaaatcgggcacctcctttttcctgcagTGGGTGGGCAGCGCCGAGGCTACGACAACCGGGCCTATGGGCAGCAGTACTGGCGGGCAGTCTGGAAACAGAGGGgtacttgcatgtctccttctactcctccctccgggctgtgaaggatttga Alignment from GeneWise TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTACTGG-GGGCAGTCTGGAAACAGAGGG atttgtttatgcatatgcaatgtaaatcgggcacctcctttttcctgcagTGGGTGGGCAGCGCCGAGGCTACGACAACCGGGCCTATGGGCAGCAGTACTGGCGGGCAGTCTGGAAACAGAGGGgtacttgcatgtctccttctactcctccctccgggctgtgaaggatttga #### Hnrnpul2_ID2409_13 --> 0 - 0 Original Alignment GGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAACGATTCTACAGTCGAGAT-TATGAGTACAACAGATACAGAGACTATTACAGACAATACAACCGGGAT ttaccctaaagacccataaagcattgaatctctctccctatttctttcagGGCTACCGCAATTTCTATGATCGATACAAAGGTGACTATGAACGATTCTATAGTCGGGATCTATGAGTACAACAGATATAGGGGATATTACAGAGAATACAACCGGGATgtaagtatatgggatagagtggggaagaaaaggacacaatccactggatg Alignment from CESAR GGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAACGATTCTACAGTCGAGAT-TATGAGTACAACAGATACAGAGACTATTACAGACAATACAACCGGGAT ttaccctaaagacccataaagcattgaatctctctccctatttctttcagGGCTACCGCAATTTCTATGATCGATACAAAGGTGACTATGAACGATTCTATAGTCGGGATCTATGAGTACAACAGATATAGGGGATATTACAGAGAATACAACCGGGATgtaagtatatgggatagagtggggaagaaaaggacacaatccactggatg Alignment from Spaln_aa2Genome GGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAACGATTCTACAGTCGAGAT-TATGAGTACAACAGATACAGAGACTATTACAGACAATACAACCGGGAT ttaccctaaagacccataaagcattgaatctctctccctatttctttcagGGCTACCGCAATTTCTATGATCGATACAAAGGTGACTATGAACGATTCTATAGTCGGGATcTATGAGTACAACAGATATAGGGGATATTACAGAGAATACAACCGGGATgtaagtatatgggatagagtggggaagaaaaggacacaatccactggatg Alignment from Spaln_nt2Genome GGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAACGATTCTACAGTCGAGAT-TATGAGTACAACAGATACAGAGACTATTACAGACAATACAACCGGGAT ttaccctaaagacccataaagcattgaatctctctccctatttctttcagGGCTACCGCAATTTCTATGATCGATACAAAGGTGACTATGAACGATTCTATAGTCGGGATCTATGAGTACAACAGATATAGGGGATATTACAGAGAATACAACCGGGATgtaagtatatgggatagagtggggaagaaaaggacacaatccactggatg Alignment from Pairagon GGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAACGATTCTACAGTCGAGAT-TATGAGTACAACAGATACAGAGACTATTACAGACAATACAACCGGGAT ttaccctaaagacccataaagcattgaatctctctccctatttctttcagGGCTACCGCAATTTCTATGATCGATACAAAGGTGACTATGAACGATTCTATAGTCGGGATCTATGAGTACAACAGATATAGGGGATATTACAGAGAATACAACCGGGATgtaagtatatgggatagagtggggaagaaaaggacacaatccactggatg Alignment from Exonerate_protein2genome GGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAACGATTCTACAGTCGAGAT-TATGAGTACAACAGATACAGAGACTATTACAGACAATACAACCGGGAT ttaccctaaagacccataaagcattgaatctctctccctatttctttcagGGCTACCGCAATTTCTATGATCGATACAAAGGTGACTATGAACGATTCTATAGTCGGGATCTATGAGTACAACAGATATAGGGGATATTACAGAGAATACAACCGGGATgtaagtatatgggatagagtggggaagaaaaggacacaatccactggatg Alignment from Exonerate_coding2genome GGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAACGATTCTACAGTCGAGAT-TATGAGTACAACAGATACAGAGACTATTACAGACAATACAACCGGGAT ttaccctaaagacccataaagcattgaatctctctccctatttctttcagGGCTACCGCAATTTCTATGATCGATACAAAGGTGACTATGAACGATTCTATAGTCGGGATCTATGAGTACAACAGATATAGGGGATATTACAGAGAATACAACCGGGATgtaagtatatgggatagagtggggaagaaaaggacacaatccactggatg Alignment from GeneWise GGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAACGATTCTACAGTCGA-GATTATGAGTACAACAGATACAGAGACTATTACAGACAATACAACCGGGAT ttaccctaaagacccataaagcattgaatctctctccctatttctttcagGGCTACCGCAATTTCTATGATCGATACAAAGGTGACTATGAACGATTCTATAGTCGGGATCTATGAGTACAACAGATATAGGGGATATTACAGAGAATACAACCGGGATgtaagtatatgggatagagtggggaagaaaaggacacaatccactggatg #### Hoga1_ID8380_3 --> 2 - 0 Original Alignment ccACGCAAGCCACAGTAGAGATGACTGTCAGC-ATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggtgtgaactgatccagtattgctttgttaaaaatatttcctctattagccATGCAAGCTACAGTAGAGATGACTGTCAGCCATGGCCCAGGTAGGCGCTGATGTTGCCATGGTGGTGACCCCTTGTTACTATCATGGCCGCATGAGCAGTGCAGCACTCATTCACCACTACACCAAGgtgcgggggaatggtagatgtggactggaggtcaggattgacagagacag Alignment from CESAR ccACGCAAGCCACAGTAGAGATGACTGTCAGC-ATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggtgtgaactgatccagtattgctttgttaaaaatatttcctctattagccATGCAAGCTACAGTAGAGATGACTGTCAGCCATGGCCCAGGTAGGCGCTGATGTTGCCATGGTGGTGACCCCTTGTTACTATCATGGCCGCATGAGCAGTGCAGCACTCATTCACCACTACACCAAGgtgcgggggaatggtagatgtggactggaggtcaggattgacagagacag Alignment from Spaln_aa2Genome CCACGCAAGCCACAGTAGAGATGACTGTCAGC-ATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggtgtgaactgatccagtattgctttgttaaaaatatttcctctattagCCATGCAAGCTACAGTAGAGATGACTGTCAGCcATGGCCCAGGTAGGCGCTGATGTTGCCATGGTGGTGACCCCTTGTTACTATCATGGCCGCATGAGCAGTGCAGCACTCATTCACCACTACACCAAGgtgcgggggaatggtagatgtggactggaggtcaggattgacagagacag Alignment from Spaln_nt2Genome CCACGCAAGCCACAGTAGAGATGACTGTCAGC-ATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggtgtgaactgatccagtattgctttgttaaaaatatttcctctattagCCATGCAAGCTACAGTAGAGATGACTGTCAGCCATGGCCCAGGTAGGCGCTGATGTTGCCATGGTGGTGACCCCTTGTTACTATCATGGCCGCATGAGCAGTGCAGCACTCATTCACCACTACACCAAGgtgcgggggaatggtagatgtggactggaggtcaggattgacagagacag Alignment from Pairagon CCACGCAAGCCACAGTAGAGATGACTGTCAG-CATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggtgtgaactgatccagtattgctttgttaaaaatatttcctctattagCCATGCAAGCTACAGTAGAGATGACTGTCAGCCATGGCCCAGGTAGGCGCTGATGTTGCCATGGTGGTGACCCCTTGTTACTATCATGGCCGCATGAGCAGTGCAGCACTCATTCACCACTACACCAAGgtgcgggggaatggtagatgtggactggaggtcaggattgacagagacag Alignment from Exonerate_protein2genome CCACGCAAGCCACAGTAGAGATGACTGTCAGC-ATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggtgtgaactgatccagtattgctttgttaaaaatatttcctctattagCCATGCAAGCTACAGTAGAGATGACTGTCAGCCATGGCCCAGGTAGGCGCTGATGTTGCCATGGTGGTGACCCCTTGTTACTATCATGGCCGCATGAGCAGTGCAGCACTCATTCACCACTACACCAAGgtgcgggggaatggtagatgtggactggaggtcaggattgacagagacag Alignment from Exonerate_coding2genome CCACGCAAGCCACAGTAGAGATGACTGTCAGC-ATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggtgtgaactgatccagtattgctttgttaaaaatatttcctctattagCCATGCAAGCTACAGTAGAGATGACTGTCAGCCATGGCCCAGGTAGGCGCTGATGTTGCCATGGTGGTGACCCCTTGTTACTATCATGGCCGCATGAGCAGTGCAGCACTCATTCACCACTACACCAAGgtgcgggggaatggtagatgtggactggaggtcaggattgacagagacag Alignment from GeneWise CCACGCAAGCCACAGTAGAGATGACTGTC-AGCATGGCTCAGGTGGGTGCTGATGTCGCCATGGTGGTGACCCCTTGTTACTATCGTGGCCGCATGAGCAGCGCTGCCCTCATTCACCACTACACCAAG tggtgtgaactgatccagtattgctttgttaaaaatatttcctctattagCCATGCAAGCTACAGTAGAGATGACTGTCAGCCATGGCCCAGGTAGGCGCTGATGTTGCCATGGTGGTGACCCCTTGTTACTATCATGGCCGCATGAGCAGTGCAGCACTCATTCACCACTACACCAAGgtgcgggggaatggtagatgtggactggaggtcaggattgacagagacag #### Hps1_ID8614_14 --> 1 - 2 Original Alignment gGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAAT-GTCACCATGGTGtc cataaacaattgcccctgcctgagccccctctctcttcctctcttcataggGAGAGGCTTTTGGACTGGAAGGACTTTTCACTGGTGAATAGCTGGAGAAATCGTCACCATGGTTtcgtaaagtcttgatatatattcatatgaatagcccacagctatctgagagt Alignment from CESAR gGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAAT-GTCACCATGGTGtc cataaacaattgcccctgcctgagccccctctctcttcctctcttcataggGAGAGGCTTTTGGACTGGAAGGACTTTTCACTGGTGAATAGCTGGAGAAATCGTCACCATGGTTtcgtaaagtcttgatatatattcatatgaatagcccacagctatctgagagt Alignment from Spaln_aa2Genome GGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTC------ACCATGGTGTC cataaacaattgcccctgcctgagccccctctctcttcctctcttcatagGGAGAGGCTTTTGGACTGGAAGGACTTTTCACTGGTGAATAGCTGGAGAAATCGTCACCATGGTTTCGTAAAgtcttgatatatattcatatgaatagcccacagctatctgagagt Alignment from Spaln_nt2Genome GGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAAT-GTCACCATGGTGTC cataaacaattgcccctgcctgagccccctctctcttcctctcttcatagGGAGAGGCTTTTGGACTGGAAGGACTTTTCACTGGTGAATAGCTGGAGAAATCGTCACCATGGTTTCgtaaagtcttgatatatattcatatgaatagcccacagctatctgagagt Alignment from Pairagon GGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAAT-GTCACCATGGTGTC cataaacaattgcccctgcctgagccccctctctcttcctctcttcatagGGAGAGGCTTTTGGACTGGAAGGACTTTTCACTGGTGAATAGCTGGAGAAATCGTCACCATGGTTTCgtaaagtcttgatatatattcatatgaatagcccacagctatctgagagt Alignment from Exonerate_protein2genome GGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAAT-GTCACCATGGTGTC cataaacaattgcccctgcctgagccccctctctcttcctctcttcatagGGAGAGGCTTTTGGACTGGAAGGACTTTTCACTGGTGAATAGCTGGAGAAATCGTCACCATGGTTTCgtaaagtcttgatatatattcatatgaatagcccacagctatctgagagt Alignment from Exonerate_coding2genome GGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAAT-GTCACCATGGTGTC cataaacaattgcccctgcctgagccccctctctcttcctctcttcatagGGAGAGGCTTTTGGACTGGAAGGACTTTTCACTGGTGAATAGCTGGAGAAATCGTCACCATGGTTTCgtaaagtcttgatatatattcatatgaatagcccacagctatctgagagt Alignment from GeneWise AGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAAT- cataaacaattgcccctgcctgagccccctctctcttcctctcttcatagggagAGGCTTTTGGACTGGAAGGACTTTTCACTGGTGAATAGCTGGAGAAATCgtcaccatggtttcgtaaagtcttgatatatattcatatgaatagcccacagctatctgagagt #### Hps1_ID8615_13 --> 1 - 2 Original Alignment gCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCC-CAGAAACTCATGaa ctgtattctgtggtggggagctccatgtacatgctttgtttggtctttaggTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATCTACCAGCTTAGCTTCCTGGTCACTGCACCCAGTAGAGGAGGGCCACACCTACCCCAGCACCTACAGGACCAAGCCCCAAAAACTTATGaagtaagtgtgtcatgcttgaagaagagaccagtagttagggcacataaaca Alignment from CESAR gCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCC-CAGAAACTCATGaa ctgtattctgtggtggggagctccatgtacatgctttgtttggtctttaggTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATCTACCAGCTTAGCTTCCTGGTCACTGCACCCAGTAGAGGAGGGCCACACCTACCCCAGCACCTACAGGACCAAGCCCCAAAAACTTATGaagtaagtgtgtcatgcttgaagaagagaccagtagttagggcacataaaca Alignment from Spaln_aa2Genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCC-CAGAAACTCATGAA ctgtattctgtggtggggagctccatgtacatgctttgtttggtctttagGTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATCTACCAGCTTAGCTTCCTGGTCACTGCACCCAGTAGAGGAGGGCCACACCTACCCCAGCACCTACAGGACCAAGCCcCAAAAACTTATGAAgtaagtgtgtcatgcttgaagaagagaccagtagttagggcacataaaca Alignment from Spaln_nt2Genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCC-AGAAACTCATGAA ctgtattctgtggtggggagctccatgtacatgctttgtttggtctttagGTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATCTACCAGCTTAGCTTCCTGGTCACTGCACCCAGTAGAGGAGGGCCACACCTACCCCAGCACCTACAGGACCAAGCCCCAAAAACTTATGAAgtaagtgtgtcatgcttgaagaagagaccagtagttagggcacataaaca Alignment from Pairagon GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAG-CCCAGAAACTCATGAA ctgtattctgtggtggggagctccatgtacatgctttgtttggtctttagGTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATCTACCAGCTTAGCTTCCTGGTCACTGCACCCAGTAGAGGAGGGCCACACCTACCCCAGCACCTACAGGACCAAGCCCCAAAAACTTATGAAgtaagtgtgtcatgcttgaagaagagaccagtagttagggcacataaaca Alignment from Exonerate_protein2genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCC-CAGAAACTCATGAA ctgtattctgtggtggggagctccatgtacatgctttgtttggtctttagGTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATCTACCAGCTTAGCTTCCTGGTCACTGCACCCAGTAGAGGAGGGCCACACCTACCCCAGCACCTACAGGACCAAGCCCCAAAAACTTATGAAgtaagtgtgtcatgcttgaagaagagaccagtagttagggcacataaaca Alignment from Exonerate_coding2genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCC-CAGAAACTCATGAA ctgtattctgtggtggggagctccatgtacatgctttgtttggtctttagGTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATCTACCAGCTTAGCTTCCTGGTCACTGCACCCAGTAGAGGAGGGCCACACCTACCCCAGCACCTACAGGACCAAGCCCCAAAAACTTATGAAgtaagtgtgtcatgcttgaagaagagaccagtagttagggcacataaaca Alignment from GeneWise GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAA----------------------------------------------------------- ctgtattctgtggtggggagctccatgtacatgctttgtttggtctttagGTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATCTACCAGCTTAGCTTCCTGGTCACTGCACCCAGTAGAGGAGGGCCACACCTACCCCAGCACCTACAGGACCAAGCCCCAAAAACTTATGAAGTAAGTGTGTCATGCTTGAAGAAGAGACCAGTAGTTAGGGCACATAAACA #### Hps1_ID8621_7 --> 0 - 0 Original Alignment AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCC-ACCAGGAGTTCCAGGGAGACA tctgccattctaactgcacctcttggaacaggtttctcttgcaatttcagAGGAGACCTAAAAGCAGTCAAAACATACCAGTGCAGCAAGCAAGGAGCCAGAGCACCTCTGTCCCTCGCCAGGAGTTCCAGGGAGACAgtgagtgctaggccctttggcagaatagggtgtcgccgtctatcttccct Alignment from CESAR AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCC-ACCAGGAGTTCCAGGGAGACA tctgccattctaactgcacctcttggaacaggtttctcttgcaatttcagAGGAGACCTAAAAGCAGTCAAAACATACCAGTGCAGCAAGCAAGGAGCCAGAGCACCTCTGTCCCTCGCCAGGAGTTCCAGGGAGACAgtgagtgctaggccctttggcagaatagggtgtcgccgtctatcttccct Alignment from Spaln_aa2Genome AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCC-ACCAGGAGTTCCAGGGAGACA tctgccattctaactgcacctcttggaacaggtttctcttgcaatttcagAGGAGACCTAAAAGCAGTCAAAACATACCAGTGCAGCAAGCAAGGAGCCAGAGCACCTCTGTCCCTcGCCAGGAGTTCCAGGGAGACAgtgagtgctaggccctttggcagaatagggtgtcgccgtctatcttccct Alignment from Spaln_nt2Genome AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCC-CACCAGGAGTTCCAGGGAGACA tctgccattctaactgcacctcttggaacaggtttctcttgcaatttcagAGGAGACCTAAAAGCAGTCAAAACATACCAGTGCAGCAAGCAAGGAGCCAGAGCACCTCTGTCCCTCGCCAGGAGTTCCAGGGAGACAgtgagtgctaggccctttggcagaatagggtgtcgccgtctatcttccct Alignment from Pairagon AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCC-CACCAGGAGTTCCAGGGAGACA tctgccattctaactgcacctcttggaacaggtttctcttgcaatttcagAGGAGACCTAAAAGCAGTCAAAACATACCAGTGCAGCAAGCAAGGAGCCAGAGCACCTCTGTCCCTCGCCAGGAGTTCCAGGGAGACAgtgagtgctaggccctttggcagaatagggtgtcgccgtctatcttccct Alignment from Exonerate_protein2genome AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCC-ACCAGGAGTTCCAGGGAGACA tctgccattctaactgcacctcttggaacaggtttctcttgcaatttcagAGGAGACCTAAAAGCAGTCAAAACATACCAGTGCAGCAAGCAAGGAGCCAGAGCACCTCTGTCCCTCGCCAGGAGTTCCAGGGAGACAgtgagtgctaggccctttggcagaatagggtgtcgccgtctatcttccct Alignment from Exonerate_coding2genome AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCC-ACCAGGAGTTCCAGGGAGACA tctgccattctaactgcacctcttggaacaggtttctcttgcaatttcagAGGAGACCTAAAAGCAGTCAAAACATACCAGTGCAGCAAGCAAGGAGCCAGAGCACCTCTGTCCCTCGCCAGGAGTTCCAGGGAGACAgtgagtgctaggccctttggcagaatagggtgtcgccgtctatcttccct Alignment from GeneWise AGGAGACCCAAGAGCAGCCAAAACATCCCAGTGCAGCAGGCAAGGAGCCAGAGCACCTCAGTCCCC-ACCAGGAGTTCCAGGGAGACA tctgccattctaactgcacctcttggaacaggtttctcttgcaatttcagAGGAGACCTAAAAGCAGTCAAAACATACCAGTGCAGCAAGCAAGGAGCCAGAGCACCTCTGTCCCTCGCCAGGAGTTCCAGGGAGACAgtgagtgctaggccctttggcagaatagggtgtcgccgtctatcttccct #### Hps1_ID8622_6 --> 1 - 0 Original Alignment cCATGGTGCGAGCACCCTGCGCCCC-GCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG acaccattttagttgcattctcaccaacgaagcctttgtctctcccatagcCAAGGCGCAAGCACCCTGTGCCCTCGCGGACCTCCTT---------CTCCTGGTGCAGGACCTTCAGCCCTCCCCAGGTATGACAGAGGAGGAGGGGGAGGAAGAAGATAGTCACAGCCCTCAGgtgagagagcacaagcagaatagggtgacattatattgctgctctaagat Alignment from CESAR cCATGGTGCGAGCACCCTGCGCCCC-GCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG acaccattttagttgcattctcaccaacgaagcctttgtctctcccatagcCAAGGCGCAAGCACCCTGTGCCCTCGCGGACCTCCTT---------CTCCTGGTGCAGGACCTTCAGCCCTCCCCAGGTATGACAGAGGAGGAGGGGGAGGAAGAAGATAGTCACAGCCCTCAGgtgagagagcacaagcagaatagggtgacattatattgctgctctaagat Alignment from Spaln_aa2Genome CGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG acaccattttagttgcattctcaccaacgaagcctttgtctctcccatagCCAAGGCGCAAGCACCCTGTGCCCTCGCGGACCTCCTTCTCCTGGTGCAGGACCTTCAGCCCTCCCCAGGTATGACAGAGGAGGAGGGGGAGGAAGAAGATAGTCACAGCCCTCAGgtgagagagcacaagcagaatagggtgacattatattgctgctctaagat Alignment from Spaln_nt2Genome CCATGGTGCGAGCACCCTGCGCCC-CGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG acaccattttagttgcattctcaccaacgaagcctttgtctctcccatagCCAAGGCGCAAGCACCCTGTGCCCTCGCGGACCTCC---------TTCTCCTGGTGCAGGACCTTCAGCCCTCCCCAGGTATGACAGAGGAGGAGGGGGAGGAAGAAGATAGTCACAGCCCTCAGgtgagagagcacaagcagaatagggtgacattatattgctgctctaagat Alignment from Pairagon CCATGGTGCGAGCACCCTGCGCCC-CGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG acaccattttagttgcattctcaccaacgaagcctttgtctctcccatagCCAAGGCGCAAGCACCCTGTGCCCTCGCGGACCTCC---------TTCTCCTGGTGCAGGACCTTCAGCCCTCCCCAGGTATGACAGAGGAGGAGGGGGAGGAAGAAGATAGTCACAGCCCTCAGgtgagagagcacaagcagaatagggtgacattatattgctgctctaagat Alignment from Exonerate_protein2genome CGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG acaccattttagttgcattctcaccaacgaagcctttgtctctcccatagCCAAGGCGCAAGCACCCTGTGCCCTCGCGGACCTCCTTCTCCTGGTGCAGGACCTTCAGCCCTCCCCAGGTATGACAGAGGAGGAGGGGGAGGAAGAAGATAGTCACAGCCCTCAGgtgagagagcacaagcagaatagggtgacattatattgctgctctaagat Alignment from Exonerate_coding2genome CGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG acaccattttagttgcattctcaccaacgaagcctttgtctctcccatagCCAAGGCGCAAGCACCCTGTGCCCTCGCGGACCTCCTTCTCCTGGTGCAGGACCTTCAGCCCTCCCCAGGTATGACAGAGGAGGAGGGGGAGGAAGAAGATAGTCACAGCCCTCAGgtgagagagcacaagcagaatagggtgacattatattgctgctctaagat Alignment from GeneWise CCATGGTGCGAGCACCCTGCGCCCC-GCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGCCCTCAG acaccattttagttgcattctcaccaacgaagcctttgtctctcccatagCCAAGGCGCAAGCACCCTGTGCCCTCGCGGACCTCCTT---------CTCCTGGTGCAGGACCTTCAGCCCTCCCCAGGTATGACAGAGGAGGAGGGGGAGGAAGAAGATAGTCACAGCCCTCAGgtgagagagcacaagcagaatagggtgacattatattgctgctctaagat #### Il33_ID6362_5 --> 2 - 1 Original Alignment acCAGGTGCTACTACGCTACTAT-GAGTCTCCCTGTCCTGCAAGTCAATCAg aacttggtagtctcgtctttgttaaacctttgcccattcaccctccctagacCAGGTGCTGCTATGCTACTATCGAGTCACCCTGTCCTGCAAGTCAATCCggtgagataataggcagcaggagagaatggtgtttaggttgttaacaaagc Alignment from CESAR acCAGGTGCTACTACGCTACTAT-GAGTCTCCCTGTCCTGCAAGTCAATCAg aacttggtagtctcgtctttgttaaacctttgcccattcaccctccctagacCAGGTGCTGCTATGCTACTATCGAGTCACCCTGTCCTGCAAGTCAATCCggtgagataataggcagcaggagagaatggtgtttaggttgttaacaaagc Alignment from Spaln_aa2Genome ACCAGGTGCTACTACGCTACTAT-GAGTCTCCCTGTCCTGCAAGTCAATCAG aacttggtagtctcgtctttgttaaacctttgcccattcaccctccctagACCAGGTGCTGCTATGCTACTATcGAGTCACCCTGTCCTGCAAGTCAATCCGgtgagataataggcagcaggagagaatggtgtttaggttgttaacaaagc Alignment from Spaln_nt2Genome ACCAGGTGCTACTACGCTACTAT-GAGTCTCCCTGTCCTGCAAGTCAATCAG aacttggtagtctcgtctttgttaaacctttgcccattcaccctccctagACCAGGTGCTGCTATGCTACTATCGAGTCACCCTGTCCTGCAAGTCAATCCGgtgagataataggcagcaggagagaatggtgtttaggttgttaacaaagc Alignment from Pairagon ACCAGGTGCTACTACGCTACTAT-GAGTCTCCCTGTCCTGCAAGTCAATCAG aacttggtagtctcgtctttgttaaacctttgcccattcaccctccctagACCAGGTGCTGCTATGCTACTATCGAGTCACCCTGTCCTGCAAGTCAATCCGgtgagataataggcagcaggagagaatggtgtttaggttgttaacaaagc Alignment from Exonerate_protein2genome ACCAGGTGCTACTACGCTACTAT-GAGTCTCCCTGTCCTGCAAGTCAATCAG aacttggtagtctcgtctttgttaaacctttgcccattcaccctccctagACCAGGTGCTGCTATGCTACTATCGAGTCACCCTGTCCTGCAAGTCAATCCGgtgagataataggcagcaggagagaatggtgtttaggttgttaacaaagc Alignment from Exonerate_coding2genome ACCAGGTGCTACTACGCTACTAT-GAGTCTCCCTGTCCTGCAAGTCAATCAG aacttggtagtctcgtctttgttaaacctttgcccattcaccctccctagACCAGGTGCTGCTATGCTACTATCGAGTCACCCTGTCCTGCAAGTCAATCCGgtgagataataggcagcaggagagaatggtgtttaggttgttaacaaagc Alignment from GeneWise aacttggtagtctcgtctttgttaaacctttgcccattcaccctccctagaccaggtgctgctatgctactatcgagtcaccctgtcctgcaagtcaatccggtgagataataggcagcaggagagaatggtgtttaggttgttaacaaagc #### Incenp_ID2605_14 --> 1 - 0 Original Alignment gGAGATGCAGGAGAGA-GAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggcctgactactgccttgacagggcttgatgcttttttcttccttttaaggGAGATGCAGGAGAGACGAGAAAGCCTTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGGGGAGAAGAAGCGCAAGgtatgtgctttgtaaaaatgcactccaggtgggatatgtgtaaacctgag Alignment from CESAR gGAGATGCAGGAGAGA-GAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggcctgactactgccttgacagggcttgatgcttttttcttccttttaaggGAGATGCAGGAGAGACGAGAAAGCCTTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGGGGAGAAGAAGCGCAAGgtatgtgctttgtaaaaatgcactccaggtgggatatgtgtaaacctgag Alignment from Spaln_aa2Genome GGAGATGCAGGAGAGA-GAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggcctgactactgccttgacagggcttgatgcttttttcttccttttaagGGAGATGCAGGAGAGAcGAGAAAGCCTTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGGGGAGAAGAAGCGCAAGgtatgtgctttgtaaaaatgcactccaggtgggatatgtgtaaacctgag Alignment from Spaln_nt2Genome GGAGATGCAGGAGAGA-GAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggcctgactactgccttgacagggcttgatgcttttttcttccttttaagGGAGATGCAGGAGAGACGAGAAAGCCTTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGGGGAGAAGAAGCGCAAGgtatgtgctttgtaaaaatgcactccaggtgggatatgtgtaaacctgag Alignment from Pairagon GGAGATGCAGGAGAGA-GAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggcctgactactgccttgacagggcttgatgcttttttcttccttttaagGGAGATGCAGGAGAGACGAGAAAGCCTTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGGGGAGAAGAAGCGCAAGgtatgtgctttgtaaaaatgcactccaggtgggatatgtgtaaacctgag Alignment from Exonerate_protein2genome GGAGATGCAGGAGAGA-GAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggcctgactactgccttgacagggcttgatgcttttttcttccttttaagGGAGATGCAGGAGAGACGAGAAAGCCTTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGGGGAGAAGAAGCGCAAGgtatgtgctttgtaaaaatgcactccaggtgggatatgtgtaaacctgag Alignment from Exonerate_coding2genome GGAGATGCAGGAGAGA-GAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggcctgactactgccttgacagggcttgatgcttttttcttccttttaagGGAGATGCAGGAGAGACGAGAAAGCCTTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGGGGAGAAGAAGCGCAAGgtatgtgctttgtaaaaatgcactccaggtgggatatgtgtaaacctgag Alignment from GeneWise GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG ggcctgactactgccttgacagggcttgatgcttttttcttccttttaagggagA---TGCAGGAGAGACGAGAAAGCCTTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGGGGAGAAGAAGCGCAAGgtatgtgctttgtaaaaatgcactccaggtgggatatgtgtaaacctgag #### Incenp_ID2611_8 --> 1 - 0 Original Alignment gAGGAAACGCAGTTAC-AAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG ggagggctattgacacttgtttatgacgtctttaatgctatttgctccaggAGGAAACGCAGTTACCAAAAAGGCAATAAGTAAACCAGATGAGGAGCAACTGGAAGATGAAGAACTGAAGCCCTGCCAGAATAAAACGCCTTCGCCACCCTGCCCTGCCAACAAGgtaagtaactgctcatgtttgatgcctgtgttgtgcgttccgtccaagcc Alignment from CESAR gAGGAAACGCAGTTAC-AAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG ggagggctattgacacttgtttatgacgtctttaatgctatttgctccaggAGGAAACGCAGTTACCAAAAAGGCAATAAGTAAACCAGATGAGGAGCAACTGGAAGATGAAGAACTGAAGCCCTGCCAGAATAAAACGCCTTCGCCACCCTGCCCTGCCAACAAGgtaagtaactgctcatgtttgatgcctgtgttgtgcgttccgtccaagcc Alignment from Spaln_aa2Genome GAGGAAACGCAGTTAC-AAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG ggagggctattgacacttgtttatgacgtctttaatgctatttgctccagGAGGAAACGCAGTTACcAAAAAGGCAATAAGTAAACCAGATGAGGAGCAACTGGAAGATGAAGAACTGAAGCCCTGCCAGAATAAAACGCCTTCGCCACCCTGCCCTGCCAACAAGgtaagtaactgctcatgtttgatgcctgtgttgtgcgttccgtccaagcc Alignment from Spaln_nt2Genome GAGGAAACGCAGTTA-CAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG ggagggctattgacacttgtttatgacgtctttaatgctatttgctccagGAGGAAACGCAGTTACCAAAAAGGCAATAAGTAAACCAGATGAGGAGCAACTGGAAGATGAAGAACTGAAGCCCTGCCAGAATAAAACGCCTTCGCCACCCTGCCCTGCCAACAAGgtaagtaactgctcatgtttgatgcctgtgttgtgcgttccgtccaagcc Alignment from Pairagon GAGGAAACGCAGTTA-CAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG ggagggctattgacacttgtttatgacgtctttaatgctatttgctccagGAGGAAACGCAGTTACCAAAAAGGCAATAAGTAAACCAGATGAGGAGCAACTGGAAGATGAAGAACTGAAGCCCTGCCAGAATAAAACGCCTTCGCCACCCTGCCCTGCCAACAAGgtaagtaactgctcatgtttgatgcctgtgttgtgcgttccgtccaagcc Alignment from Exonerate_protein2genome GAGGAAACGCAGTTAC-AAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG ggagggctattgacacttgtttatgacgtctttaatgctatttgctccagGAGGAAACGCAGTTACCAAAAAGGCAATAAGTAAACCAGATGAGGAGCAACTGGAAGATGAAGAACTGAAGCCCTGCCAGAATAAAACGCCTTCGCCACCCTGCCCTGCCAACAAGgtaagtaactgctcatgtttgatgcctgtgttgtgcgttccgtccaagcc Alignment from Exonerate_coding2genome GAGGAAACGCAGTTAC-AAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG ggagggctattgacacttgtttatgacgtctttaatgctatttgctccagGAGGAAACGCAGTTACCAAAAAGGCAATAAGTAAACCAGATGAGGAGCAACTGGAAGATGAAGAACTGAAGCCCTGCCAGAATAAAACGCCTTCGCCACCCTGCCCTGCCAACAAGgtaagtaactgctcatgtttgatgcctgtgttgtgcgttccgtccaagcc Alignment from GeneWise GAGGAAACGCAGTTAC-AAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG ggagggctattgacacttgtttatgacgtctttaatgctatttgctccagGAGGAAACGCAGTTACCAAAAAGGCAATAAGTAAACCAGATGAGGAGCAACTGGAAGATGAAGAACTGAAGCCCTGCCAGAATAAAACGCCTTCGCCACCCTGCCCTGCCAACAAGgtaagtaactgctcatgtttgatgcctgtgttgtgcgttccgtccaagcc #### Jak2_ID6240_16 --> 0 - 1 Original Alignment AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGAT-CTTAACAGCCTGTTTACTCCAg gtaagagcactttggagtgtgcctcttagcgaactcacctctgcctgcagAAGCTGCAGTTCTATGAAGACAAGCATCAGCTTCCCGCCCCCAAGTGGACGGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTCGTCCGTGATCCTTAACAGCCTGTTTACTCCAggtaattgctggtcagactcctctgaccactgatgttctatgtttcttcct Alignment from CESAR AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGAT-CTTAACAGCCTGTTTACTCCAg gtaagagcactttggagtgtgcctcttagcgaactcacctctgcctgcagAAGCTGCAGTTCTATGAAGACAAGCATCAGCTTCCCGCCCCCAAGTGGACGGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTCGTCCGTGATCCTTAACAGCCTGTTTACTCCAggtaattgctggtcagactcctctgaccactgatgttctatgtttcttcct Alignment from Spaln_aa2Genome AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGAT-CTTAACAGCCTGTTTACTCCAG gtaagagcactttggagtgtgcctcttagcgaactcacctctgcctgcagAAGCTGCAGTTCTATGAAGACAAGCATCAGCTTCCCGCCCCCAAGTGGACGGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTCGTCCGTGATcCTTAACAGCCTGTTTACTCCAGgtaattgctggtcagactcctctgaccactgatgttctatgtttcttcct Alignment from Spaln_nt2Genome AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGAT-CTTAACAGCCTGTTTACTCCAG gtaagagcactttggagtgtgcctcttagcgaactcacctctgcctgcagAAGCTGCAGTTCTATGAAGACAAGCATCAGCTTCCCGCCCCCAAGTGGACGGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTCGTCCGTGATCCTTAACAGCCTGTTTACTCCAGgtaattgctggtcagactcctctgaccactgatgttctatgtttcttcct Alignment from Pairagon AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGAT-CTTAACAGCCTGTTTACTCCAG gtaagagcactttggagtgtgcctcttagcgaactcacctctgcctgcagAAGCTGCAGTTCTATGAAGACAAGCATCAGCTTCCCGCCCCCAAGTGGACGGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTCGTCCGTGATCCTTAACAGCCTGTTTACTCCAGgtaattgctggtcagactcctctgaccactgatgttctatgtttcttcct Alignment from Exonerate_protein2genome AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGAT-CTTAACAGCCTGTTTACTCCAG gtaagagcactttggagtgtgcctcttagcgaactcacctctgcctgcagAAGCTGCAGTTCTATGAAGACAAGCATCAGCTTCCCGCCCCCAAGTGGACGGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTCGTCCGTGATCCTTAACAGCCTGTTTACTCCAGgtaattgctggtcagactcctctgaccactgatgttctatgtttcttcct Alignment from Exonerate_coding2genome AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGAT-CTTAACAGCCTGTTTACTCCAG gtaagagcactttggagtgtgcctcttagcgaactcacctctgcctgcagAAGCTGCAGTTCTATGAAGACAAGCATCAGCTTCCCGCCCCCAAGTGGACGGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTCGTCCGTGATCCTTAACAGCCTGTTTACTCCAGgtaattgctggtcagactcctctgaccactgatgttctatgtttcttcct Alignment from GeneWise AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGAT-CTTAACAGCCTGTTTACTCCAG gtaagagcactttggagtgtgcctcttagcgaactcacctctgcctgcagAAGCTGCAGTTCTATGAAGACAAGCATCAGCTTCCCGCCCCCAAGTGGACGGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTCGTCCGTGATCCTTAACAGCCTGTTTACTCCAGgtaattgctggtcagactcctctgaccactgatgttctatgtttcttcct #### Kat5_ID1110_12 --> 2 - 2 Original Alignment gcTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCC-TACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCaa aggctcccacgtatacatgatgcttactatttactatccctcccccctaggcTATGAACTCTCGAAAGTAGATGGGAAGACCGGGACTCCTGAGAAACCCCTATCAGATCTTGGCCTCCTATCCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCaagtaagttgaaatgctaactggggggttgtggtatggtctatctgttctgg Alignment from CESAR gcTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCC-TACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCaa aggctcccacgtatacatgatgcttactatttactatccctcccccctaggcTATGAACTCTCGAAAGTAGATGGGAAGACCGGGACTCCTGAGAAACCCCTATCAGATCTTGGCCTCCTATCCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCaagtaagttgaaatgctaactggggggttgtggtatggtctatctgttctgg Alignment from Spaln_aa2Genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCC-TACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA aggctcccacgtatacatgatgcttactatttactatccctcccccctagGCTATGAACTCTCGAAAGTAGATGGGAAGACCGGGACTCCTGAGAAACCCCTATCAGATCTTGGCCTCCTATCCcTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtaagttgaaatgctaactggggggttgtggtatggtctatctgttctgg Alignment from Spaln_nt2Genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTAT-CCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA aggctcccacgtatacatgatgcttactatttactatccctcccccctagGCTATGAACTCTCGAAAGTAGATGGGAAGACCGGGACTCCTGAGAAACCCCTATCAGATCTTGGCCTCCTATCCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtaagttgaaatgctaactggggggttgtggtatggtctatctgttctgg Alignment from Pairagon GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTAT-CCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA aggctcccacgtatacatgatgcttactatttactatccctcccccctagGCTATGAACTCTCGAAAGTAGATGGGAAGACCGGGACTCCTGAGAAACCCCTATCAGATCTTGGCCTCCTATCCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtaagttgaaatgctaactggggggttgtggtatggtctatctgttctgg Alignment from Exonerate_protein2genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCC-TACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA aggctcccacgtatacatgatgcttactatttactatccctcccccctagGCTATGAACTCTCGAAAGTAGATGGGAAGACCGGGACTCCTGAGAAACCCCTATCAGATCTTGGCCTCCTATCCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtaagttgaaatgctaactggggggttgtggtatggtctatctgttctgg Alignment from Exonerate_coding2genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCC-TACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA aggctcccacgtatacatgatgcttactatttactatccctcccccctagGCTATGAACTCTCGAAAGTAGATGGGAAGACCGGGACTCCTGAGAAACCCCTATCAGATCTTGGCCTCCTATCCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtaagttgaaatgctaactggggggttgtggtatggtctatctgttctgg Alignment from GeneWise GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTA-TCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA aggctcccacgtatacatgatgcttactatttactatccctcccccctagGCTATGAACTCTCGAAAGTAGATGGGAAGACCGGGACTCCTGAGAAACCCCTATCAGATCTTGGCCTCCTATCCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtaagttgaaatgctaactggggggttgtggtatggtctatctgttctgg #### Kat5_ID1115_7 --> 0 - 0 Original Alignment AATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGG-AAATCTAATTGCTTGGGCACTGATGAG cagtttcctcctccagaataatctcacaaccccgcccctctctcttttagAATGGATCAACCTGTAGAGCTGTGGCAGCCCAGCCAGGGTGGAAGCGACAAATCTAACTGCTTGGGCACTGATGAGgtgagtcccagccagggtggaagcgaaaatctaactgcttgggcactgat Alignment from CESAR AATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGG-AAATCTAATTGCTTGGGCACTGATGAG cagtttcctcctccagaataatctcacaaccccgcccctctctcttttagAATGGATCAACCTGTAGAGCTGTGGCAGCCCAGCCAGGGTGGAAGCGACAAATCTAACTGCTTGGGCACTGATGAGgtgagtcccagccagggtggaagcgaaaatctaactgcttgggcactgat Alignment from Spaln_aa2Genome AATGGGTCAGCCCGTAGGGCAGTGGCA GCCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGAT cagtttcctcctccagaataatctcacaaccccgcccctctctcttttagAATGGATCAACCTGTAGAGCTGTGGCAgcccagccagggtggaagcgacaaatctaactgcttgggcactgatgaggtgagTCCCAGCCAGGGTGGAAGCGAAAATCTAACTGCTTGGGCACTGAT Alignment from Spaln_nt2Genome AATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCTGG AC-GGAAGCGGAAATCTAATTGCTTGGGCACTGAT cagtttcctcctccagaataatctcacaaccccgcccctctctcttttagAATGGATCAACCTGTAGAGCTGTGGCAGCCCAGCCAGGgtggaagcgacaaatctaactgcttgggcactgatgaggtgagtcccagccagGGTGGAAGCGAAAATCTAACTGCTTGGGCACTGAT Alignment from Pairagon AATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGG-AAATCTAATTGCTTGGGCACTGATGAG cagtttcctcctccagaataatctcacaaccccgcccctctctcttttagAATGGATCAACCTGTAGAGCTGTGGCAGCCCAGCCAGGGTGGAAGCGACAAATCTAACTGCTTGGGCACTGATGAGgtgagtcccagccagggtggaagcgaaaatctaactgcttgggcactgat Alignment from Exonerate_protein2genome AATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGG-AAATCTAATTGCTTGGGCACTGATGAG cagtttcctcctccagaataatctcacaaccccgcccctctctcttttagAATGGATCAACCTGTAGAGCTGTGGCAGCCCAGCCAGGGTGGAAGCGACAAATCTAACTGCTTGGGCACTGATGAGgtgagtcccagccagggtggaagcgaaaatctaactgcttgggcactgat Alignment from Exonerate_coding2genome AATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGG-AAATCTAATTGCTTGGGCACTGATGAG cagtttcctcctccagaataatctcacaaccccgcccctctctcttttagAATGGATCAACCTGTAGAGCTGTGGCAGCCCAGCCAGGGTGGAAGCGACAAATCTAACTGCTTGGGCACTGATGAGgtgagtcccagccagggtggaagcgaaaatctaactgcttgggcactgat Alignment from GeneWise AATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGG-AAATCTAATTGCTTGGGCACTGATGAG cagtttcctcctccagaataatctcacaaccccgcccctctctcttttagAATGGATCAACCTGTAGAGCTGTGGCAGCCCAGCCAGGGTGGAAGCGACAAATCTAACTGCTTGGGCACTGATGAGgtgagtcccagccagggtggaagcgaaaatctaactgcttgggcactgat #### Kat5_ID1116_6 --> 0 - 0 Original Alignment AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCA-GTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG cacccacctcctgcatcttctgacctggtttctttccttggctctcttagAAACGGAAGGTAGAGGTGGTTTCACCAGCAAGCCCACGTGCCCAGTGAGACAGCCGCAGTCTCAGTTTTCCCTCAGgcaagtcttcaattctttcttcaagtgccgaaatgttttgtctgcacttt Alignment from CESAR AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCA-GTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG cacccacctcctgcatcttctgacctggtttctttccttggctctcttagAAACGGAAGGTAGAGGTGGTTTCACCAGCAAGCCCACGTGCCCAGTGAGACAGCCGCAGTCTCAGTTTTCCCTCAGgcaagtcttcaattctttcttcaagtgccgaaatgttttgtctgcacttt Alignment from Spaln_aa2Genome AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCA-GTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG cacccacctcctgcatcttctgacctggtttctttccttggctctcttagAAACGGAAGGTAGAGGTGGTTTCACCAGCAAGCCCAcGTGCCCAGTGAGACAGCCGCAGTCTCAGTTTTCCCTCAGgcaagtcttcaattctttcttcaagtgccgaaatgttttgtctgcacttt Alignment from Spaln_nt2Genome AAACGGAAGGTGGAGGTGGTTTCACCAGCAAC-CCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG cacccacctcctgcatcttctgacctggtttctttccttggctctcttagAAACGGAAGGTAGAGGTGGTTTCACCAGCAAGCCCACGTGCCCAGTGAGACAGCCGCAGTCTCAGTTTTCCCTCAGgcaagtcttcaattctttcttcaagtgccgaaatgttttgtctgcacttt Alignment from Pairagon AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCA-GTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG cacccacctcctgcatcttctgacctggtttctttccttggctctcttagAAACGGAAGGTAGAGGTGGTTTCACCAGCAAGCCCACGTGCCCAGTGAGACAGCCGCAGTCTCAGTTTTCCCTCAGgcaagtcttcaattctttcttcaagtgccgaaatgttttgtctgcacttt Alignment from Exonerate_protein2genome AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCA-GTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG cacccacctcctgcatcttctgacctggtttctttccttggctctcttagAAACGGAAGGTAGAGGTGGTTTCACCAGCAAGCCCACGTGCCCAGTGAGACAGCCGCAGTCTCAGTTTTCCCTCAGgcaagtcttcaattctttcttcaagtgccgaaatgttttgtctgcacttt Alignment from Exonerate_coding2genome AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCA-GTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG cacccacctcctgcatcttctgacctggtttctttccttggctctcttagAAACGGAAGGTAGAGGTGGTTTCACCAGCAAGCCCACGTGCCCAGTGAGACAGCCGCAGTCTCAGTTTTCCCTCAGgcaagtcttcaattctttcttcaagtgccgaaatgttttgtctgcacttt Alignment from GeneWise ACAGCCCCAGCCTCGGTTTTCCCTCAG CCACCTCCTGCATCT---TCTGACCTGgtttctttccttggctctcttagaaacggaaggtagaggtggtttcaccagcaagcccacgtgcccagtgagacagccgcagtctcagttttccctcaggcaagtcttcaattctttcttcaagtgccgaaatgttttgtctgcacttt #### Kat5_ID1119_3 --> 2 - 1 Original Alignment ccCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGA-AAGCTTTTCTATGTCCATTACATTGACt ctccgggcctgccctgcttgttaaactcggctttgcttttctctctacagcgCTGGCTGAGATCCTAAGTGTGAAGGACATCAGTGGCCGACAAGCTTTTCTATGTTTATTACATTGACtgtgagaccaagcctggatggaggggggttgctagataaggttaaggaaac Alignment from CESAR ccCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGA-AAGCTTTTCTATGTCCATTACATTGACt ctccgggcctgccctgcttgttaaactcggctttgcttttctctctacagcgCTGGCTGAGATCCTAAGTGTGAAGGACATCAGTGGCCGACAAGCTTTTCTATGTTTATTACATTGACtgtgagaccaagcctggatggaggggggttgctagataaggttaaggaaac Alignment from Spaln_aa2Genome CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGA-AAGCTTTTCTATGTCCATTACATTGACT ctccgggcctgccctgcttgttaaactcggctttgcttttctctctacagCGCTGGCTGAGATCCTAAGTGTGAAGGACATCAGTGGCCGAcAAGCTTTTCTATGTTTATTACATTGACTgtgagaccaagcctggatggaggggggttgctagataaggttaaggaaac Alignment from Spaln_nt2Genome CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGA-AAGCTTTTCTATGTCCATTACATTGACT ctccgggcctgccctgcttgttaaactcggctttgcttttctctctacagCGCTGGCTGAGATCCTAAGTGTGAAGGACATCAGTGGCCGACAAGCTTTTCTATGTTTATTACATTGACTgtgagaccaagcctggatggaggggggttgctagataaggttaaggaaac Alignment from Pairagon CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGA-AAGCTTTTCTATGTCCATTACATTGACT ctccgggcctgccctgcttgttaaactcggctttgcttttctctctacagCGCTGGCTGAGATCCTAAGTGTGAAGGACATCAGTGGCCGACAAGCTTTTCTATGTTTATTACATTGACTgtgagaccaagcctggatggaggggggttgctagataaggttaaggaaac Alignment from Exonerate_protein2genome CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGA-AAGCTTTTCTATGTCCATTACATTGACT ctccgggcctgccctgcttgttaaactcggctttgcttttctctctacagCGCTGGCTGAGATCCTAAGTGTGAAGGACATCAGTGGCCGACAAGCTTTTCTATGTTTATTACATTGACTgtgagaccaagcctggatggaggggggttgctagataaggttaaggaaac Alignment from Exonerate_coding2genome CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGA-AAGCTTTTCTATGTCCATTACATTGACT ctccgggcctgccctgcttgttaaactcggctttgcttttctctctacagCGCTGGCTGAGATCCTAAGTGTGAAGGACATCAGTGGCCGACAAGCTTTTCTATGTTTATTACATTGACTgtgagaccaagcctggatggaggggggttgctagataaggttaaggaaac Alignment from GeneWise CCCTGGCTGAGATCCTGAGCGTGAAGGACATCAGTGGCCGA-AAGCTTTTCTATGTCCATTACATTGACT ctccgggcctgccctgcttgttaaactcggctttgcttttctctctacagCGCTGGCTGAGATCCTAAGTGTGAAGGACATCAGTGGCCGACAAGCTTTTCTATGTTTATTACATTGACTgtgagaccaagcctggatggaggggggttgctagataaggttaaggaaac #### Kazald1_ID9301_3 --> 0 - 1 Original Alignment TTTAGGGGTGGACCT-CAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAg ggagcaggacttctgcaaataactttccttcattttgtttttaaaaacagTTCAGGGGTGGACCTCCAAAAGTTTGAAGTGACCAGCTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGTTGCCTTACCCGAAATGCTCTCGGCCAAGCTGAAGCCTCTGCAACCCTGACAGTACTCACACCAggtgagggtgagcactgggtgctaggatgagtcatgatagggctcctagat Alignment from CESAR TTTAGGGGTGGACCT-CAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAg ggagcaggacttctgcaaataactttccttcattttgtttttaaaaacagTTCAGGGGTGGACCTCCAAAAGTTTGAAGTGACCAGCTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGTTGCCTTACCCGAAATGCTCTCGGCCAAGCTGAAGCCTCTGCAACCCTGACAGTACTCACACCAggtgagggtgagcactgggtgctaggatgagtcatgatagggctcctagat Alignment from Spaln_aa2Genome GGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG ggagcaggacttctgcaaataactttccttcattttgtttttaaaaacagttcagGGGTGGACCTCCAAAAGTTTGAAGTGACCAGCTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGTTGCCTTACCCGAAATGCTCTCGGCCAAGCTGAAGCCTCTGCAACCCTGACAGTACTCACACCAGgtgagggtgagcactgggtgctaggatgagtcatgatagggctcctagat Alignment from Spaln_nt2Genome TTTAGGGGTGGACCTC-AGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG ggagcaggacttctgcaaataactttccttcattttgtttttaaaaacagTTCAGGGGTGGACCTCCAAAAGTTTGAAGTGACCAGCTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGTTGCCTTACCCGAAATGCTCTCGGCCAAGCTGAAGCCTCTGCAACCCTGACAGTACTCACACCAGgtgagggtgagcactgggtgctaggatgagtcatgatagggctcctagat Alignment from Pairagon TTTAGGGGTGGACCT-CAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG ggagcaggacttctgcaaataactttccttcattttgtttttaaaaacagTTCAGGGGTGGACCTCCAAAAGTTTGAAGTGACCAGCTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGTTGCCTTACCCGAAATGCTCTCGGCCAAGCTGAAGCCTCTGCAACCCTGACAGTACTCACACCAGgtgagggtgagcactgggtgctaggatgagtcatgatagggctcctagat Alignment from Exonerate_protein2genome TTTAGGGGTGGACCT-CAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG ggagcaggacttctgcaaataactttccttcattttgtttttaaaaacagTTCAGGGGTGGACCTCCAAAAGTTTGAAGTGACCAGCTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGTTGCCTTACCCGAAATGCTCTCGGCCAAGCTGAAGCCTCTGCAACCCTGACAGTACTCACACCAGgtgagggtgagcactgggtgctaggatgagtcatgatagggctcctagat Alignment from Exonerate_coding2genome TTTAGGGGTGGACCT-CAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG ggagcaggacttctgcaaataactttccttcattttgtttttaaaaacagTTCAGGGGTGGACCTCCAAAAGTTTGAAGTGACCAGCTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGTTGCCTTACCCGAAATGCTCTCGGCCAAGCTGAAGCCTCTGCAACCCTGACAGTACTCACACCAGgtgagggtgagcactgggtgctaggatgagtcatgatagggctcctagat Alignment from GeneWise TTTAGGGGTGGACCT-CAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAGTGCTCACACCAG ggagcaggacttctgcaaataactttccttcattttgtttttaaaaacagTTCAGGGGTGGACCTCCAAAAGTTTGAAGTGACCAGCTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGTTGCCTTACCCGAAATGCTCTCGGCCAAGCTGAAGCCTCTGCAACCCTGACAGTACTCACACCAGgtgagggtgagcactgggtgctaggatgagtcatgatagggctcctagat #### Kcnip2_ID9603_9 --> 0 - 0 Original Alignment AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTC-ATTGAGTCTTGTCAACAG gaggaaaggtttcactcacccattcccctttgtttgttttgctgatgcagAAGATGGACAGAAACAAGGATGGTGTGGTGACCATTGAGGAATTCCATTGAGTCTTGTCAACAGgtttgtatacactctctaaacatctctgtactgaagtgaaattcagacct Alignment from CESAR AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTC-ATTGAGTCTTGTCAACAG gaggaaaggtttcactcacccattcccctttgtttgttttgctgatgcagAAGATGGACAGAAACAAGGATGGTGTGGTGACCATTGAGGAATTCCATTGAGTCTTGTCAACAGgtttgtatacactctctaaacatctctgtactgaagtgaaattcagacct Alignment from Spaln_aa2Genome AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTC-ATTGAGTCTTGTCAACAG gaggaaaggtttcactcacccattcccctttgtttgttttgctgatgcagAAGATGGACAGAAACAAGGATGGTGTGGTGACCATTGAGGAATTCcATTGAGTCTTGTCAACAGgtttgtatacactctctaaacatctctgtactgaagtgaaattcagacct Alignment from Spaln_nt2Genome AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATT-CATTGAGTCTTGTCAACAG gaggaaaggtttcactcacccattcccctttgtttgttttgctgatgcagAAGATGGACAGAAACAAGGATGGTGTGGTGACCATTGAGGAATTCCATTGAGTCTTGTCAACAGgtttgtatacactctctaaacatctctgtactgaagtgaaattcagacct Alignment from Pairagon AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATT-CATTGAGTCTTGTCAACAG gaggaaaggtttcactcacccattcccctttgtttgttttgctgatgcagAAGATGGACAGAAACAAGGATGGTGTGGTGACCATTGAGGAATTCCATTGAGTCTTGTCAACAGgtttgtatacactctctaaacatctctgtactgaagtgaaattcagacct Alignment from Exonerate_protein2genome AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTC-ATTGAGTCTTGTCAACAG gaggaaaggtttcactcacccattcccctttgtttgttttgctgatgcagAAGATGGACAGAAACAAGGATGGTGTGGTGACCATTGAGGAATTCCATTGAGTCTTGTCAACAGgtttgtatacactctctaaacatctctgtactgaagtgaaattcagacct Alignment from Exonerate_coding2genome AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTC-ATTGAGTCTTGTCAACAG gaggaaaggtttcactcacccattcccctttgtttgttttgctgatgcagAAGATGGACAGAAACAAGGATGGTGTGGTGACCATTGAGGAATTCCATTGAGTCTTGTCAACAGgtttgtatacactctctaaacatctctgtactgaagtgaaattcagacct Alignment from GeneWise AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTC-ATTGAGTCTTGTCAACAG gaggaaaggtttcactcacccattcccctttgtttgttttgctgatgcagAAGATGGACAGAAACAAGGATGGTGTGGTGACCATTGAGGAATTCCATTGAGTCTTGTCAACAGgtttgtatacactctctaaacatctctgtactgaagtgaaattcagacct #### Kcnip2_ID9604_8 --> 0 - 0 Original Alignment GAAATGCTCGACATC-ATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG tcaacctcaactagtttgctcttaagagactgccagtgctcctcttctagGAAATGCTTGACATCCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCGCTCCGGGAGGAAGCCCCAAGGGAACACGTGGAGAGCTTCTTCCAAgtaagtgggtctgtgactttttaattaatgagatatgtctagtctagtaa Alignment from CESAR GAAATGCTCGACATC-ATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG tcaacctcaactagtttgctcttaagagactgccagtgctcctcttctagGAAATGCTTGACATCCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCGCTCCGGGAGGAAGCCCCAAGGGAACACGTGGAGAGCTTCTTCCAAgtaagtgggtctgtgactttttaattaatgagatatgtctagtctagtaa Alignment from Spaln_aa2Genome GAAATGCTCGACATC-ATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG tcaacctcaactagtttgctcttaagagactgccagtgctcctcttctagGAAATGCTTGACATCcATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCGCTCCGGGAGGAAGCCCCAAGGGAACACGTGGAGAGCTTCTTCCAAgtaagtgggtctgtgactttttaattaatgagatatgtctagtctagtaa Alignment from Spaln_nt2Genome GAAATGCTCGACATC-ATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG tcaacctcaactagtttgctcttaagagactgccagtgctcctcttctagGAAATGCTTGACATCCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCGCTCCGGGAGGAAGCCCCAAGGGAACACGTGGAGAGCTTCTTCCAAgtaagtgggtctgtgactttttaattaatgagatatgtctagtctagtaa Alignment from Pairagon GAAATGCTCGACAT-CATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG tcaacctcaactagtttgctcttaagagactgccagtgctcctcttctagGAAATGCTTGACATCCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCGCTCCGGGAGGAAGCCCCAAGGGAACACGTGGAGAGCTTCTTCCAAgtaagtgggtctgtgactttttaattaatgagatatgtctagtctagtaa Alignment from Exonerate_protein2genome GAAATGCTCGACATC-ATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG tcaacctcaactagtttgctcttaagagactgccagtgctcctcttctagGAAATGCTTGACATCCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCGCTCCGGGAGGAAGCCCCAAGGGAACACGTGGAGAGCTTCTTCCAAgtaagtgggtctgtgactttttaattaatgagatatgtctagtctagtaa Alignment from Exonerate_coding2genome GAAATGCTCGACATC-ATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG tcaacctcaactagtttgctcttaagagactgccagtgctcctcttctagGAAATGCTTGACATCCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCGCTCCGGGAGGAAGCCCCAAGGGAACACGTGGAGAGCTTCTTCCAAgtaagtgggtctgtgactttttaattaatgagatatgtctagtctagtaa Alignment from GeneWise ---------------GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG tcaacctcaactagtttgctcttaagagactgccagTGCTCCTCTTCTAGGAAATGCTTGACATCCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCGCTCCGGGAGGAAGCCCCAAGGGAACACGTGGAGAGCTTCTTCCAAgtaagtgggtctgtgactttttaattaatgagatatgtctagtctagtaa #### Kcnip2_ID9605_7 --> 0 - 0 Original Alignment GACTTTGTGGCTGGTTTGTCAGTGATT-CTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG gcatccataccaaagtgggttggaagagtgacaggtccctgtgtccccagGACTTTGTGGCAGGTTTGTCAGTAATTCCTTCGGGGAACCATAGATGATAGATTGAATTGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtgagtggccactaatgtggaacacaggtctgataacatgtgtcaacaaa Alignment from CESAR GACTTTGTGGCTGGTTTGTCAGTGATT-CTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG gcatccataccaaagtgggttggaagagtgacaggtccctgtgtccccagGACTTTGTGGCAGGTTTGTCAGTAATTCCTTCGGGGAACCATAGATGATAGATTGAATTGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtgagtggccactaatgtggaacacaggtctgataacatgtgtcaacaaa Alignment from Spaln_aa2Genome GACTTTGTGGCTGGTTTGTCAGTGATT-CTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG gcatccataccaaagtgggttggaagagtgacaggtccctgtgtccccagGACTTTGTGGCAGGTTTGTCAGTAATTcCTTCGGGGAACCATAGATGATAGATTGAATTGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtgagtggccactaatgtggaacacaggtctgataacatgtgtcaacaaa Alignment from Spaln_nt2Genome GACTTTGTGGCTGGTTTGTCAGTGATTC-TTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG gcatccataccaaagtgggttggaagagtgacaggtccctgtgtccccagGACTTTGTGGCAGGTTTGTCAGTAATTCCTTCGGGGAACCATAGATGATAGATTGAATTGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtgagtggccactaatgtggaacacaggtctgataacatgtgtcaacaaa Alignment from Pairagon GACTTTGTGGCTGGTTTGTCAGTGATT-CTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG gcatccataccaaagtgggttggaagagtgacaggtccctgtgtccccagGACTTTGTGGCAGGTTTGTCAGTAATTCCTTCGGGGAACCATAGATGATAGATTGAATTGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtgagtggccactaatgtggaacacaggtctgataacatgtgtcaacaaa Alignment from Exonerate_protein2genome GACTTTGTGGCTGGTTTGTCAGTGATT-CTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG gcatccataccaaagtgggttggaagagtgacaggtccctgtgtccccagGACTTTGTGGCAGGTTTGTCAGTAATTCCTTCGGGGAACCATAGATGATAGATTGAATTGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtgagtggccactaatgtggaacacaggtctgataacatgtgtcaacaaa Alignment from Exonerate_coding2genome GACTTTGTGGCTGGTTTGTCAGTGATT-CTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG gcatccataccaaagtgggttggaagagtgacaggtccctgtgtccccagGACTTTGTGGCAGGTTTGTCAGTAATTCCTTCGGGGAACCATAGATGATAGATTGAATTGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtgagtggccactaatgtggaacacaggtctgataacatgtgtcaacaaa Alignment from GeneWise GACTTTGTGGCTGGTTTGTCAGTGATT-CTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG gcatccataccaaagtgggttggaagagtgacaggtccctgtgtccccagGACTTTGTGGCAGGTTTGTCAGTAATTCCTTCGGGGAACCATAGATGATAGATTGAATTGGGCTTTCAACTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtgagtggccactaatgtggaacacaggtctgataacatgtgtcaacaaa #### Kcnip2_ID9606_6 --> 2 - 0 Original Alignment acTCCAGCAACTACGCTACTTTTCTC-TTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG cagccaagggaaactggatatgcctgcgagtcactcactctcctctacagacTCCAGCAACTACGCTACTTTCCTCCTTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAAgtgaggcaggatagatgatgggccaaacaaactaagtctattaccctgga Alignment from CESAR acTCCAGCAACTACGCTACTTTTCTC-TTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG cagccaagggaaactggatatgcctgcgagtcactcactctcctctacagacTCCAGCAACTACGCTACTTTCCTCCTTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAAgtgaggcaggatagatgatgggccaaacaaactaagtctattaccctgga Alignment from Spaln_aa2Genome ACTCCAGCAACTACGCTACTTTTCTC-TTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG cagccaagggaaactggatatgcctgcgagtcactcactctcctctacagACTCCAGCAACTACGCTACTTTCCTCcTTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAAgtgaggcaggatagatgatgggccaaacaaactaagtctattaccctgga Alignment from Spaln_nt2Genome ACTCCAGCAACTACGCTACTTTTCTC-TTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG cagccaagggaaactggatatgcctgcgagtcactcactctcctctacagACTCCAGCAACTACGCTACTTTCCTCCTTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAAgtgaggcaggatagatgatgggccaaacaaactaagtctattaccctgga Alignment from Pairagon ACTCCAGCAACTACGCTACTTTTCT-CTTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG cagccaagggaaactggatatgcctgcgagtcactcactctcctctacagACTCCAGCAACTACGCTACTTTCCTCCTTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAAgtgaggcaggatagatgatgggccaaacaaactaagtctattaccctgga Alignment from Exonerate_protein2genome ACTCCAGCAACTACGCTACTTTTCTC-TTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG cagccaagggaaactggatatgcctgcgagtcactcactctcctctacagACTCCAGCAACTACGCTACTTTCCTCCTTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAAgtgaggcaggatagatgatgggccaaacaaactaagtctattaccctgga Alignment from Exonerate_coding2genome ACTCCAGCAACTACGCTACTTTTCTC-TTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG cagccaagggaaactggatatgcctgcgagtcactcactctcctctacagACTCCAGCAACTACGCTACTTTCCTCCTTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAAgtgaggcaggatagatgatgggccaaacaaactaagtctattaccctgga Alignment from GeneWise ACTCCAGCAACTACGCTACTTTT-CTCTTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG cagccaagggaaactggatatgcctgcgagtcactcactctcctctacagACTCCAGCAACTACGCTACTTTCCTCCTTCAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAAgtgaggcaggatagatgatgggccaaacaaactaagtctattaccctgga #### Kcnip2_ID9607_5 --> 0 - 1 Original Alignment GAATGTCCCAGCGGA-ATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAg tttatttggacatggggacaagtctgctatgatcaggcttctccctgcagGAATGTCCCAGTGGCCATTGTCAATGAAAAGAACTTCAAGCAAATTTATTCACAGTTCTTTCCCCAAGAGggtaatatggcaggcatccaagaattaacactgcccataggctggacaggt Alignment from CESAR GAATGTCCCAGCGGA-ATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAg tttatttggacatggggacaagtctgctatgatcaggcttctccctgcagGAATGTCCCAGTGGCCATTGTCAATGAAAAGAACTTCAAGCAAATTTATTCACAGTTCTTTCCCCAAGAGggtaatatggcaggcatccaagaattaacactgcccataggctggacaggt Alignment from Spaln_aa2Genome GAATGTCCCAGCGGA-ATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAG tttatttggacatggggacaagtctgctatgatcaggcttctccctgcagGAATGTCCCAGTGGCcATTGTCAATGAAAAGAACTTCAAGCAAATTTATTCACAGTTCTTTCCCCAAGAGGgtaatatggcaggcatccaagaattaacactgcccataggctggacaggt Alignment from Spaln_nt2Genome GAATGTCCCAGCGGA-ATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAG tttatttggacatggggacaagtctgctatgatcaggcttctccctgcagGAATGTCCCAGTGGCCATTGTCAATGAAAAGAACTTCAAGCAAATTTATTCACAGTTCTTTCCCCAAGAGGgtaatatggcaggcatccaagaattaacactgcccataggctggacaggt Alignment from Pairagon GAATGTCCCAGCGG-AATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAG tttatttggacatggggacaagtctgctatgatcaggcttctccctgcagGAATGTCCCAGTGGCCATTGTCAATGAAAAGAACTTCAAGCAAATTTATTCACAGTTCTTTCCCCAAGAGGgtaatatggcaggcatccaagaattaacactgcccataggctggacaggt Alignment from Exonerate_protein2genome GAATGTCCCAGCGGA-ATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAG tttatttggacatggggacaagtctgctatgatcaggcttctccctgcagGAATGTCCCAGTGGCCATTGTCAATGAAAAGAACTTCAAGCAAATTTATTCACAGTTCTTTCCCCAAGAGGgtaatatggcaggcatccaagaattaacactgcccataggctggacaggt Alignment from Exonerate_coding2genome GAATGTCCCAGCGGA-ATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAG tttatttggacatggggacaagtctgctatgatcaggcttctccctgcagGAATGTCCCAGTGGCCATTGTCAATGAAAAGAACTTCAAGCAAATTTATTCACAGTTCTTTCCCCAAGAGGgtaatatggcaggcatccaagaattaacactgcccataggctggacaggt Alignment from GeneWise ---------------GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAG tttatttggacatggggacaagtctgctatgatcagGCTTCTCCCTGCAGGAATGTCCCAGTGGCCATTGTCAATGAAAAGAACTTCAAGCAAATTTATTCACAGTTCTTTCCCCAAGAGGgtaatatggcaggcatccaagaattaacactgcccataggctggacaggt #### Kif20b_ID6998_3 --> 0 - 0 Original Alignment GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAA-GACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ttttacttttttccataaacacattctctactgtattttttctaacccag------GTGCAAATTTTGGATTCACAGTCTGTTCTGCTGAAACGACCCTCAAAGTATACTTGGTCACTTAAGTCAGAAAAGCTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAAgtaagtagtgccctgttagactgagaaagccaaaagaaactaatagcatt Alignment from CESAR GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAA-GACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ttttacttttttccataaacacattctctactgtattttttctaacccag------GTGCAAATTTTGGATTCACAGTCTGTTCTGCTGAAACGACCCTCAAAGTATACTTGGTCACTTAAGTCAGAAAAGCTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAAgtaagtagtgccctgttagactgagaaagccaaaagaaactaatagcatt Alignment from Spaln_aa2Genome GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCT-CAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ttttacttttttccataaacacattctctactgtattttttctaacccag------GTGCAAATTTTGGATTCACAGTCTGTTCTGCTGAAACGACCCtCAAAGTATACTTGGTCACTTAAGTCAGAAAAGCTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAAgtaagtagtgccctgttagactgagaaagccaaaagaaactaatagcatt Alignment from Spaln_nt2Genome GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTG-AAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ttttacttttttccataaacacattctctactgtattttttctaacccag------GTGCAAATTTTGGATTCACAGTCTGTTCTGCTGAAACGACCCTCAAAGTATACTTGGTCACTTAAGTCAGAAAAGCTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAAgtaagtagtgccctgttagactgagaaagccaaaagaaactaatagcatt Alignment from Pairagon GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAA-GACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ttttacttttttccataaacacattctctactgtattttttctaacccag------GTGCAAATTTTGGATTCACAGTCTGTTCTGCTGAAACGACCCTCAAAGTATACTTGGTCACTTAAGTCAGAAAAGCTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAAgtaagtagtgccctgttagactgagaaagccaaaagaaactaatagcatt Alignment from Exonerate_protein2genome GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAA-GACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ttttacttttttccataaacacattctctactgtattttttctaACCCAGGTGCAAATTTTGGATTCACAGTCTGTTCTGCTGAAACGACCCTCAAAGTATACTTGGTCACTTAAGTCAGAAAAGCTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAAgtaagtagtgccctgttagactgagaaagccaaaagaaactaatagcatt Alignment from Exonerate_coding2genome GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAA-GACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ttttacttttttccataaacacattctctactgtattttttctaACCCAGGTGCAAATTTTGGATTCACAGTCTGTTCTGCTGAAACGACCCTCAAAGTATACTTGGTCACTTAAGTCAGAAAAGCTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAAgtaagtagtgccctgttagactgagaaagccaaaagaaactaatagcatt Alignment from GeneWise ---CAAGTTTTGGATTCACAGTCTGTTCTGCTG-AAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG ttttacttttttccataaacacattctctactgtattttttctaacccagGTGCAAATTTTGGATTCACAGTCTGTTCTGCTGAAACGACCCTCAAAGTATACTTGGTCACTTAAGTCAGAAAAGCTCTGGACAGGTGGCACAAAAATTCAGTTTTTCTAAAgtaagtagtgccctgttagactgagaaagccaaaagaaactaatagcatt #### Kif20b_ID7004_9 --> 1 - 2 Original Alignment tCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTA-ACACGAGTTAGTga gcattgaaatgtggaatgaaaatatttgataaatatatgctgtgtttcagtCATAGCATATTCACTATCAGAATATTACAGATAGAAGATTCTGAGATACCTCGTGTTCACACGAGTTAGTgagtgagttggaaccttttttaagttgggagttttttcggaatgaaaaactt Alignment from CESAR tCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTA-ACACGAGTTAGTga gcattgaaatgtggaatgaaaatatttgataaatatatgctgtgtttcagtCATAGCATATTCACTATCAGAATATTACAGATAGAAGATTCTGAGATACCTCGTGTTCACACGAGTTAGTgagtgagttggaaccttttttaagttgggagttttttcggaatgaaaaactt Alignment from Spaln_aa2Genome TCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTGA gcattgaaatgtggaatgaaaatatttgataaatatatgctgtgtttcagTCATAGCATATTCACTATCAGAATATTACAGATAGAAGATTCTGAGATACCTCGTGTT---CACACGAGTTAgtgagtgagttggaaccttttttaagttgggagttttttcggaatgaaaaactt Alignment from Spaln_nt2Genome TCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTA-ACACGAGTTAGTGA gcattgaaatgtggaatgaaaatatttgataaatatatgctgtgtttcagTCATAGCATATTCACTATCAGAATATTACAGATAGAAGATTCTGAGATACCTCGTGTTCACACGAGTTAGTGAgtgagttggaaccttttttaagttgggagttttttcggaatgaaaaactt Alignment from Pairagon TCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTG-TAACACGAGTTAGTGA gcattgaaatgtggaatgaaaatatttgataaatatatgctgtgtttcagTCATAGCATATTCACTATCAGAATATTACAGATAGAAGATTCTGAGATACCTCGTGTTCACACGAGTTAGTGAgtgagttggaaccttttttaagttgggagttttttcggaatgaaaaactt Alignment from Exonerate_protein2genome TCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTA-ACACGAGTTAGTGA gcattgaaatgtggaatgaaaatatttgataaatatatgctgtgtttcagTCATAGCATATTCACTATCAGAATATTACAGATAGAAGATTCTGAGATACCTCGTGTTCACACGAGTTAGTGAgtgagttggaaccttttttaagttgggagttttttcggaatgaaaaactt Alignment from Exonerate_coding2genome TCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTA-ACACGAGTTAGTGA gcattgaaatgtggaatgaaaatatttgataaatatatgctgtgtttcagTCATAGCATATTCACTATCAGAATATTACAGATAGAAGATTCTGAGATACCTCGTGTTCACACGAGTTAGTGAgtgagttggaaccttttttaagttgggagttttttcggaatgaaaaactt Alignment from GeneWise TCACAGCATATTCACTATTAGAATATTACAGATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTGA gcattgaaatgtggaatgaaaatatttgataaatatatgctgtgtttcagTCATAGCATATTCACTATCAGAATATTACAGATAGAAGATTCTGAGATACCTCGTGTT---CACACGAGTTAgtgagtgagttggaaccttttttaagttgggagttttttcggaatgaaaaactt #### Kif20b_ID7006_11 --> 1 - 0 Original Alignment gGTTCAGCATGTGCCTTTCCGAGAAAGTAAACTGACCCACTATTTCCAAAGTTTT-TTCACTGGAAAAGGGAAAATATGCATGATCATCAATATTAGTCAGTCTTGCTCTGCCTATGATGAGACACTCAATGTCCTGAAGTTCTCAACCACTGCGCAAAGG tgccaacattaagatacggtgtatcataaggttcttttcttttctttaaggGTTCAGCATGTGCCTTTCCGTGAAAGTAAGCTGACCCACTATTTCCAAAGTTTTCTTCACTGGAAAAGGGAAAATATGCATGATTATAAACATTAGTCAGTCCTGCTCTGCCTATGATGAGACTCTCAATGTTCTCAAGTTCTCAATCACTGTGGAGAGGgttagagttcttagatttatactaaagcattaactgcttaggctgcaaga Alignment from CESAR gGTTCAGCATGTGCCTTTCCGAGAAAGTAAACTGACCCACTATTTCCAAAGTTTT-TTCACTGGAAAAGGGAAAATATGCATGATCATCAATATTAGTCAGTCTTGCTCTGCCTATGATGAGACACTCAATGTCCTGAAGTTCTCAACCACTGCGCAAAGG tgccaacattaagatacggtgtatcataaggttcttttcttttctttaaggGTTCAGCATGTGCCTTTCCGTGAAAGTAAGCTGACCCACTATTTCCAAAGTTTTCTTCACTGGAAAAGGGAAAATATGCATGATTATAAACATTAGTCAGTCCTGCTCTGCCTATGATGAGACTCTCAATGTTCTCAAGTTCTCAATCACTGTGGAGAGGgttagagttcttagatttatactaaagcattaactgcttaggctgcaaga Alignment from Spaln_aa2Genome GGTTCAGCATGTGCCTTTCCGAGAAAGTAAACTGACCCACTATTTCCAAAGTTTT-TTCACTGGAAAAGGGAAAATATGCATGATCATCAATATTAGTCAGTCTTGCTCTGCCTATGATGAGACACTCAATGTCCTGAAGTTCTCAACCACTGCGCAAAGG tgccaacattaagatacggtgtatcataaggttcttttcttttctttaagGGTTCAGCATGTGCCTTTCCGTGAAAGTAAGCTGACCCACTATTTCCAAAGTTTTcTTCACTGGAAAAGGGAAAATATGCATGATTATAAACATTAGTCAGTCCTGCTCTGCCTATGATGAGACTCTCAATGTTCTCAAGTTCTCAATCACTGTGGAGAGGgttagagttcttagatttatactaaagcattaactgcttaggctgcaaga Alignment from Spaln_nt2Genome GGTTCAGCATGTGCCTTTCCGAGAAAGTAAACTGACCCACTATTTCCAAAG-TTTTTTCACTGGAAAAGGGAAAATATGCATGATCATCAATATTAGTCAGTCTTGCTCTGCCTATGATGAGACACTCAATGTCCTGAAGTTCTCAACCACTGCGCAAAGG tgccaacattaagatacggtgtatcataaggttcttttcttttctttaagGGTTCAGCATGTGCCTTTCCGTGAAAGTAAGCTGACCCACTATTTCCAAAGTTTTCTTCACTGGAAAAGGGAAAATATGCATGATTATAAACATTAGTCAGTCCTGCTCTGCCTATGATGAGACTCTCAATGTTCTCAAGTTCTCAATCACTGTGGAGAGGgttagagttcttagatttatactaaagcattaactgcttaggctgcaaga Alignment from Pairagon GGTTCAGCATGTGCCTTTCCGAGAAAGTAAACTGACCCACTATTTCCAAAGTTTT-TTCACTGGAAAAGGGAAAATATGCATGATCATCAATATTAGTCAGTCTTGCTCTGCCTATGATGAGACACTCAATGTCCTGAAGTTCTCAACCACTGCGCAAAGG tgccaacattaagatacggtgtatcataaggttcttttcttttctttaagGGTTCAGCATGTGCCTTTCCGTGAAAGTAAGCTGACCCACTATTTCCAAAGTTTTCTTCACTGGAAAAGGGAAAATATGCATGATTATAAACATTAGTCAGTCCTGCTCTGCCTATGATGAGACTCTCAATGTTCTCAAGTTCTCAATCACTGTGGAGAGGgttagagttcttagatttatactaaagcattaactgcttaggctgcaaga Alignment from Exonerate_protein2genome GGTTCAGCATGTGCCTTTCCGAGAAAGTAAACTGACCCACTATTTCCAAAGT-TTTTTCACTGGAAAAGGGAAAATATGCATGATCATCAATATTAGTCAGTCTTGCTCTGCCTATGATGAGACACTCAATGTCCTGAAGTTCTCAACCACTGCGCAAAGG tgccaacattaagatacggtgtatcataaggttcttttcttttctttaagGGTTCAGCATGTGCCTTTCCGTGAAAGTAAGCTGACCCACTATTTCCAAAGTTTTCTTCACTGGAAAAGGGAAAATATGCATGATTATAAACATTAGTCAGTCCTGCTCTGCCTATGATGAGACTCTCAATGTTCTCAAGTTCTCAATCACTGTGGAGAGGgttagagttcttagatttatactaaagcattaactgcttaggctgcaaga Alignment from Exonerate_coding2genome GGTTCAGCATGTGCCTTTCCGAGAAAGTAAACTGACCCACTATTTCCAAAGT-TTTTTCACTGGAAAAGGGAAAATATGCATGATCATCAATATTAGTCAGTCTTGCTCTGCCTATGATGAGACACTCAATGTCCTGAAGTTCTCAACCACTGCGCAAAGG tgccaacattaagatacggtgtatcataaggttcttttcttttctttaagGGTTCAGCATGTGCCTTTCCGTGAAAGTAAGCTGACCCACTATTTCCAAAGTTTTCTTCACTGGAAAAGGGAAAATATGCATGATTATAAACATTAGTCAGTCCTGCTCTGCCTATGATGAGACTCTCAATGTTCTCAAGTTCTCAATCACTGTGGAGAGGgttagagttcttagatttatactaaagcattaactgcttaggctgcaaga Alignment from GeneWise GGTTCAGCATGTGCCTTTCCGAGAAAGTAAACTGACCCACTATTTCCAA-AGTTTTTTCACTGGAAAAGGGAAAATATGCATGATCATCAATATTAGTCAGTCTTGCTCTGCCTATGATGAGACACTCAATGTCCTGAAGTTCTCAACCACTGCGCAAAGG tgccaacattaagatacggtgtatcataaggttcttttcttttctttaagGGTTCAGCATGTGCCTTTCCGTGAAAGTAAGCTGACCCACTATTTCCAAAGTTTTCTTCACTGGAAAAGGGAAAATATGCATGATTATAAACATTAGTCAGTCCTGCTCTGCCTATGATGAGACTCTCAATGTTCTCAAGTTCTCAATCACTGTGGAGAGGgttagagttcttagatttatactaaagcattaactgcttaggctgcaaga #### Klc2_ID854_12 --> 0 - 0 Original Alignment GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGC-AGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tacaagacttcatgtatactttggtcacgtctctctttcttgcctcacagGGCCTAGATCCCGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAGGATGGCAGTGGTGGACGAGGACACCGCCGTGGCCAGTAGAGATGTGGTTGGGCCT---CCTGAGTTGGACCTGGAAGAGTCAGAGCCTGCGGCAGAGTGGAGTGGAgtaagtgtgtaaccagaggtgggctgtaagactaccatgaatggaatgcc Alignment from CESAR GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGC-AGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tacaagacttcatgtatactttggtcacgtctctctttcttgcctcacagGGCCTAGATCCCGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAGGATGGCAGTGGTGGACGAGGACACCGCCGTGGCCAGTAGAGATGTGGTTGGGCCT---CCTGAGTTGGACCTGGAAGAGTCAGAGCCTGCGGCAGAGTGGAGTGGAgtaagtgtgtaaccagaggtgggctgtaagactaccatgaatggacgtgg Alignment from Spaln_aa2Genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGC-AGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tacaagacttcatgtatactttggtcacgtctctctttcttgcctcacagGGCCTAGATCCCGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAGGATGGCAGTGGTGGACGAGGACACCGCCGTGGCcAGTAGAGATGTGGTTGGGCCT---CCTGAGTTGGACCTGGAAGAGTCAGAGCCTGCGGCAGAGTGGAGTGGAgtaagtgtgtaaccagaggtgggctgtaagactaccatgaatggaatgcc Alignment from Spaln_nt2Genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGC-AGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tacaagacttcatgtatactttggtcacgtctctctttcttgcctcacagGGCCTAGATCCCGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAGGATGGCAGTGGTGGACGAGGACACCGCCGTGGCCAGTAGAGATGTGGTTGGGCCTC---CTGAGTTGGACCTGGAAGAGTCAGAGCCTGCGGCAGAGTGGAGTGGAgtaagtgtgtaaccagaggtgggctgtaagactaccatgaatggaatgcc Alignment from Pairagon GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGG-CAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tacaagacttcatgtatactttggtcacgtctctctttcttgcctcacagGGCCTAGATCCCGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAGGATGGCAGTGGTGGACGAGGACACCGCCGTGGCCAGTAGAGATGTGGTTGGGCCTC---CTGAGTTGGACCTGGAAGAGTCAGAGCCTGCGGCAGAGTGGAGTGGAgtaagtgtgtaaccagaggtgggctgtaagactaccatgaatggaatgcc Alignment from Exonerate_protein2genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGC-AGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tacaagacttcatgtatactttggtcacgtctctctttcttgcctcacagGGCCTAGATCCCGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAGGATGGCAGTGGTGGACGAGGACACCGCCGTGGCCAGTAGAGATGTGGTTGGGCCT---CCTGAGTTGGACCTGGAAGAGTCAGAGCCTGCGGCAGAGTGGAGTGGAgtaagtgtgtaaccagaggtgggctgtaagactaccatgaatggaatgcc Alignment from Exonerate_coding2genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGC-AGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tacaagacttcatgtatactttggtcacgtctctctttcttgcctcacagGGCCTAGATCCCGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAGGATGGCAGTGGTGGACGAGGACACCGCCGTGGCCAGTAGAGATGTGGTTGGGCCT---CCTGAGTTGGACCTGGAAGAGTCAGAGCCTGCGGCAGAGTGGAGTGGAgtaagtgtgtaaccagaggtgggctgtaagactaccatgaatggaatgcc Alignment from GeneWise GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAACTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGC-AGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG tacaagacttcatgtatactttggtcacgtctctctttcttgcctcacagGGCCTAGATCCCGCCAGTCAGACCAAGGTGGTAGAACTGTTAAAGGATGGCAGTGGTGGACGAGGACACCGCCGTGGCCAGTAGAGATGTGGTTGGGCCTCCT---GAGTTGGACCTGGAAGAGTCAGAGCCTGCGGCAGAGTGGAGTGGAgtaagtgtgtaaccagaggtgggctgtaagactaccatgaatggaatgcc #### Klc2_ID855_11 --> 1 - 0 Original Alignment tCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTG-GAAGACTGTGCCAGCCGCAGCCGCAAACAG cggaggggaagaccactgggtttacaatcccacccgccttccttttccagcCCTACAGTCAATACCACATTGCGAAGCTTGGGTGCCCTGTACTGGCGTGAGGGCAAATTGGAGGCTGCACACACACTGCGAAGACTGTGCGAGCCGTAGCCGCAAACAAgtaagtctttcatcatggaggatggtaagtagagacctacaagacttcat Alignment from CESAR tCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTG-GAAGACTGTGCCAGCCGCAGCCGCAAACAG cggaggggaagaccactgggtttacaatcccacccgccttccttttccagcCCTACAGTCAATACCACATTGCGAAGCTTGGGTGCCCTGTACTGGCGTGAGGGCAAATTGGAGGCTGCACACACACTGCGAAGACTGTGCGAGCCGTAGCCGCAAACAAgtaagtctttcatcatggaggatggtaagtagagacctacaagacttcat Alignment from Spaln_aa2Genome TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTG-GAAGACTGTGCCAGCCGCAGCCGCAAACAG cggaggggaagaccactgggtttacaatcccacccgccttccttttccagCCCTACAGTCAATACCACATTGCGAAGCTTGGGTGCCCTGTACTGGCGTGAGGGCAAATTGGAGGCTGCACACACACTGcGAAGACTGTGCGAGCCGTAGCCGCAAACAAgtaagtctttcatcatggaggatggtaagtagagacctacaagacttcat Alignment from Spaln_nt2Genome TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTG-GAAGACTGTGCCAGCCGCAGCCGCAAACAG cggaggggaagaccactgggtttacaatcccacccgccttccttttccagCCCTACAGTCAATACCACATTGCGAAGCTTGGGTGCCCTGTACTGGCGTGAGGGCAAATTGGAGGCTGCACACACACTGCGAAGACTGTGCGAGCCGTAGCCGCAAACAAgtaagtctttcatcatggaggatggtaagtagagacctacaagacttcat Alignment from Pairagon TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTG-GAAGACTGTGCCAGCCGCAGCCGCAAACAG cggaggggaagaccactgggtttacaatcccacccgccttccttttccagCCCTACAGTCAATACCACATTGCGAAGCTTGGGTGCCCTGTACTGGCGTGAGGGCAAATTGGAGGCTGCACACACACTGCGAAGACTGTGCGAGCCGTAGCCGCAAACAAgtaagtctttcatcatggaggatggtaagtagagacctacaagacttcat Alignment from Exonerate_protein2genome TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTG-GAAGACTGTGCCAGCCGCAGCCGCAAACAG cggaggggaagaccactgggtttacaatcccacccgccttccttttccagCCCTACAGTCAATACCACATTGCGAAGCTTGGGTGCCCTGTACTGGCGTGAGGGCAAATTGGAGGCTGCACACACACTGCGAAGACTGTGCGAGCCGTAGCCGCAAACAAgtaagtctttcatcatggaggatggtaagtagagacctacaagacttcat Alignment from Exonerate_coding2genome TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTG-GAAGACTGTGCCAGCCGCAGCCGCAAACAG cggaggggaagaccactgggtttacaatcccacccgccttccttttccagCCCTACAGTCAATACCACATTGCGAAGCTTGGGTGCCCTGTACTGGCGTGAGGGCAAATTGGAGGCTGCACACACACTGCGAAGACTGTGCGAGCCGTAGCCGCAAACAAgtaagtctttcatcatggaggatggtaagtagagacctacaagacttcat Alignment from GeneWise TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACA-CTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG cggaggggaagaccactgggtttacaatcccacccgccttccttttccagCCCTACAGTCAATACCACATTGCGAAGCTTGGGTGCCCTGTACTGGCGTGAGGGCAAATTGGAGGCTGCACACACACTGCGAAGACTGTGCGAGCCGTAGCCGCAAACAAgtaagtctttcatcatggaggatggtaagtagagacctacaagacttcat #### Klc2_ID861_5 --> 1 - 0 Original Alignment gGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAAT-GATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT ggtcatgctttaggctgaagggcattccctttttattattttcctcttagaGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATCGATGCCCTGGCTATTCGGGAAAAGACACTGGGCAAGGACCATCCAGCTgtaggttgtctaagtattcctctgttctgtagtcatcagaacttccaggt Alignment from CESAR gGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAAT-GATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT ggtcatgctttaggctgaagggcattccctttttattattttcctcttagaGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATCGATGCCCTGGCTATTCGGGAAAAGACACTGGGCAAGGACCATCCAGCTgtaggttgtctaagtattcctctgttctgtagtcatcagaacttccaggt Alignment from Spaln_aa2Genome GGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAAT-GATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT ggtcatgctttaggctgaagggcattccctttttattattttcctcttagAGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATcGATGCCCTGGCTATTCGGGAAAAGACACTGGGCAAGGACCATCCAGCTgtaggttgtctaagtattcctctgttctgtagtcatcagaacttccaggt Alignment from Spaln_nt2Genome GGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAAT-GATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT ggtcatgctttaggctgaagggcattccctttttattattttcctcttagAGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATCGATGCCCTGGCTATTCGGGAAAAGACACTGGGCAAGGACCATCCAGCTgtaggttgtctaagtattcctctgttctgtagtcatcagaacttccaggt Alignment from Pairagon GGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAAT-GATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT ggtcatgctttaggctgaagggcattccctttttattattttcctcttagAGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATCGATGCCCTGGCTATTCGGGAAAAGACACTGGGCAAGGACCATCCAGCTgtaggttgtctaagtattcctctgttctgtagtcatcagaacttccaggt Alignment from Exonerate_protein2genome GGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAAT-GATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT ggtcatgctttaggctgaagggcattccctttttattattttcctcttagAGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATCGATGCCCTGGCTATTCGGGAAAAGACACTGGGCAAGGACCATCCAGCTgtaggttgtctaagtattcctctgttctgtagtcatcagaacttccaggt Alignment from Exonerate_coding2genome GGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAAT-GATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT ggtcatgctttaggctgaagggcattccctttttattattttcctcttagAGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATCGATGCCCTGGCTATTCGGGAAAAGACACTGGGCAAGGACCATCCAGCTgtaggttgtctaagtattcctctgttctgtagtcatcagaacttccaggt Alignment from GeneWise GGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTC-AATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT ggtcatgctttaggctgaagggcattccctttttattattttcctcttagAGACCAGAATAAGTACAAGGATGCTGCTCACCTGCTCAATCGATGCCCTGGCTATTCGGGAAAAGACACTGGGCAAGGACCATCCAGCTgtaggttgtctaagtattcctctgttctgtagtcatcagaacttccaggt #### Ldb1_ID9692_8 --> 0 - 0 Original Alignment GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGT-GGGCTGTCCAATTCCACTCTCAACTACCTCCGA cgatttcttggtcagatgacctgatatcgctaacttttctccccccacagGCTCAGGACCCCCAGATGCTAGATCAACTGTCCAAAAACATTACTCGATGTCGGGTTGTCAAATACCGCTCTCAACTACTTCCGAgtgagtgtcagacgaccatgccagtaattagattctgtgccctggtttat Alignment from CESAR GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGT-GGGCTGTCCAATTCCACTCTCAACTACCTCCGA cgatttcttggtcagatgacctgatatcgctaacttttctccccccacagGCTCAGGACCCCCAGATGCTAGATCAACTGTCCAAAAACATTACTCGATGTCGGGTTGTCAAATACCGCTCTCAACTACTTCCGAgtgagtgtcagacgaccatgccagtaattagattctgtgccctggtttat Alignment from Spaln_aa2Genome GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGT-GGGCTGTCCAATTCCACTCTCAACTACCTCCGA cgatttcttggtcagatgacctgatatcgctaacttttctccccccacagGCTCAGGACCCCCAGATGCTAGATCAACTGTCCAAAAACATTACTCGATGTcGGGTTGTCAAATACCGCTCTCAACTACTTCCGAgtgagtgtcagacgaccatgccagtaattagattctgtgccctggtttat Alignment from Spaln_nt2Genome ACGCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGT-GGGCTGTCCAATTCCACTCTCAACTACCTCCGA cgatttcttggtcagatgacctgatatcgctaacttttctccccccacAGGCTCAGGACCCCCAGATGCTAGATCAACTGTCCAAAAACATTACTCGATGTCGGGTTGTCAAATACCGCTCTCAACTACTTCCGAgtgagtgtcagacgaccatgccagtaattagattctgtgccctggtttat Alignment from Pairagon GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGT-GGGCTGTCCAATTCCACTCTCAACTACCTCCGA cgatttcttggtcagatgacctgatatcgctaacttttctccccccacagGCTCAGGACCCCCAGATGCTAGATCAACTGTCCAAAAACATTACTCGATGTCGGGTTGTCAAATACCGCTCTCAACTACTTCCGAgtgagtgtcagacgaccatgccagtaattagattctgtgccctggtttat Alignment from Exonerate_protein2genome GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGT-GGGCTGTCCAATTCCACTCTCAACTACCTCCGA cgatttcttggtcagatgacctgatatcgctaacttttctccccccacagGCTCAGGACCCCCAGATGCTAGATCAACTGTCCAAAAACATTACTCGATGTCGGGTTGTCAAATACCGCTCTCAACTACTTCCGAgtgagtgtcagacgaccatgccagtaattagattctgtgccctggtttat Alignment from Exonerate_coding2genome GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGT-GGGCTGTCCAATTCCACTCTCAACTACCTCCGA cgatttcttggtcagatgacctgatatcgctaacttttctccccccacagGCTCAGGACCCCCAGATGCTAGATCAACTGTCCAAAAACATTACTCGATGTCGGGTTGTCAAATACCGCTCTCAACTACTTCCGAgtgagtgtcagacgaccatgccagtaattagattctgtgccctggtttat Alignment from GeneWise GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGT-GGGCTGTCCAATTCCACTCTCAACTACCTCCGA cgatttcttggtcagatgacctgatatcgctaacttttctccccccacagGCTCAGGACCCCCAGATGCTAGATCAACTGTCCAAAAACATTACTCGATGTCGGGTTGTCAAATACCGCTCTCAACTACTTCCGAgtgagtgtcagacgaccatgccagtaattagattctgtgccctggtttat #### Ldb1_ID9694_6 --> 2 - 0 Original Alignment ccATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGC-AAACCCATGTTTACCCAG tcactatgtgacctctacctgtcctgaatgtatttattcattcccatcagccATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTCGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCCAAACCCATGTTTACCCAGgtacttaagccataagcacagtgaaacccaatatgatggccctaggggga Alignment from CESAR ccATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGC-AAACCCATGTTTACCCAG tcactatgtgacctctacctgtcctgaatgtatttattcattcccatcagccATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTCGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCCAAACCCATGTTTACCCAGgtacttaagccataagcacagtgaaacccaatatgatggccctaggggga Alignment from Spaln_aa2Genome CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGC-AAACCCATGTTTACCCAG tcactatgtgacctctacctgtcctgaatgtatttattcattcccatcagCCATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTCGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCcAAACCCATGTTTACCCAGgtacttaagccataagcacagtgaaacccaatatgatggccctaggggga Alignment from Spaln_nt2Genome CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGG-CAAACCCATGTTTACCCAG tcactatgtgacctctacctgtcctgaatgtatttattcattcccatcagCCATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTCGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCCAAACCCATGTTTACCCAGgtacttaagccataagcacagtgaaacccaatatgatggccctaggggga Alignment from Pairagon CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGG-CAAACCCATGTTTACCCAG tcactatgtgacctctacctgtcctgaatgtatttattcattcccatcagCCATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTCGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCCAAACCCATGTTTACCCAGgtacttaagccataagcacagtgaaacccaatatgatggccctaggggga Alignment from Exonerate_protein2genome CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGC-AAACCCATGTTTACCCAG tcactatgtgacctctacctgtcctgaatgtatttattcattcccatcagCCATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTCGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCCAAACCCATGTTTACCCAGgtacttaagccataagcacagtgaaacccaatatgatggccctaggggga Alignment from Exonerate_coding2genome CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGC-AAACCCATGTTTACCCAG tcactatgtgacctctacctgtcctgaatgtatttattcattcccatcagCCATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTCGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCCAAACCCATGTTTACCCAGgtacttaagccataagcacagtgaaacccaatatgatggccctaggggga Alignment from GeneWise CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG tcactatgtgacctctacctgtcctgaatgtatttattcattcccatcagCCATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTCGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCCAA---------ACCCATgtttacccaggtacttaagccataagcacagtgaaacccaatatgatggccctaggggga #### Ldb1_ID9695_5 --> 0 - 1 Original Alignment GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGAT-GACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATa tgcctgggggacctcttatctaacccatccgtatctcaccactgtgacagGAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATCGACGCCATGCTGACCATCACCTTTTGCCTGAAGGATGGGCCAAACAGATATagtaagatatctctgtgggagacactgttacaccttcgttatgtgtttctt Alignment from CESAR GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGAT-GACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATa tgcctgggggacctcttatctaacccatccgtatctcaccactgtgacagGAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATCGACGCCATGCTGACCATCACCTTTTGCCTGAAGGATGGGCCAAACAGATATagtaagatatctctgtgggagacactgttacaccttcgttatgtgtttctt Alignment from Spaln_aa2Genome GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGAT-GACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA tgcctgggggacctcttatctaacccatccgtatctcaccactgtgacagGAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATcGACGCCATGCTGACCATCACCTTTTGCCTGAAGGATGGGCCAAACAGATATAgtaagatatctctgtgggagacactgttacaccttcgttatgtgtttctt Alignment from Spaln_nt2Genome GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGAT-GACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA tgcctgggggacctcttatctaacccatccgtatctcaccactgtgacagGAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATCGACGCCATGCTGACCATCACCTTTTGCCTGAAGGATGGGCCAAACAGATATAgtaagatatctctgtgggagacactgttacaccttcgttatgtgtttctt Alignment from Pairagon GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGAT-GACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA tgcctgggggacctcttatctaacccatccgtatctcaccactgtgacagGAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATCGACGCCATGCTGACCATCACCTTTTGCCTGAAGGATGGGCCAAACAGATATAgtaagatatctctgtgggagacactgttacaccttcgttatgtgtttctt Alignment from Exonerate_protein2genome GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGAT-GACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA tgcctgggggacctcttatctaacccatccgtatctcaccactgtgacagGAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATCGACGCCATGCTGACCATCACCTTTTGCCTGAAGGATGGGCCAAACAGATATAgtaagatatctctgtgggagacactgttacaccttcgttatgtgtttctt Alignment from Exonerate_coding2genome GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGAT-GACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA tgcctgggggacctcttatctaacccatccgtatctcaccactgtgacagGAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATCGACGCCATGCTGACCATCACCTTTTGCCTGAAGGATGGGCCAAACAGATATAgtaagatatctctgtgggagacactgttacaccttcgttatgtgtttctt Alignment from GeneWise GAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGAT-GACGCCATGCTGACCATCACTTTCTGCTTGGAGGATGGACCAAAGAGATATA tgcctgggggacctcttatctaacccatccgtatctcaccactgtgacagGAGTGTGACAATCTCTGGTGGGATGCTTTCACAACTGAGTTCTTTGAAGATCGACGCCATGCTGACCATCACCTTTTGCCTGAAGGATGGGCCAAACAGATATAgtaagatatctctgtgggagacactgttacaccttcgttatgtgtttctt #### Ldb1_ID9697_3 --> 1 - 2 Original Alignment cCCAACTCCCATGTACCCACCTACATAC-CTGGAGCCTGGGATCgg agtcagttttctgttccatggtcactctggaattttcttgccattcacagcCCAACTCCCATGTACCCACCTACATACCCTGGAGCCTGGGATCgggtaggtggactgcagtataccacgaagtcttgcctctgcatgcacctgtg Alignment from CESAR cCCAACTCCCATGTACCCACCTACATAC-CTGGAGCCTGGGATCgg agtcagttttctgttccatggtcactctggaattttcttgccattcacagcCCAACTCCCATGTACCCACCTACATACCCTGGAGCCTGGGATCgggtaggtggactgcagtataccacgaagtcttgcctctgcatgcacctgtg Alignment from Spaln_aa2Genome agtcagttttctgttccatggtcactctggaattttcttgccattcacagcccaactcccatgtacccacctacataccctggagcctgggatcgggtaggtggactgcagtataccacgaagtcttgcctctgcatgcacctgtg Alignment from Spaln_nt2Genome CCCAACTCCCATGTACCCACCTACATAC-CTGGAGCCTGGGATCGG agtcagttttctgttccatggtcactctggaattttcttgccattcacagCCCAACTCCCATGTACCCACCTACATACCCTGGAGCCTGGGATCGGgtaggtggactgcagtataccacgaagtcttgcctctgcatgcacctgtg Alignment from Pairagon CCCAACTCCCATGTACCCACCTACATA-CCTGGAGCCTGGGATCGG agtcagttttctgttccatggtcactctggaattttcttgccattcacagCCCAACTCCCATGTACCCACCTACATACCCTGGAGCCTGGGATCGGgtaggtggactgcagtataccacgaagtcttgcctctgcatgcacctgtg Alignment from Exonerate_protein2genome agtcagttttctgttccatggtcactctggaattttcttgccattcacagcccaactcccatgtacccacctacataccctggagcctgggatcgggtaggtggactgcagtataccacgaagtcttgcctctgcatgcacctgtg Alignment from Exonerate_coding2genome agtcagttttctgttccatggtcactctggaattttcttgccattcacagcccaactcccatgtacccacctacataccctggagcctgggatcgggtaggtggactgcagtataccacgaagtcttgcctctgcatgcacctgtg Alignment from GeneWise agtcagttttctgttccatggtcactctggaattttcttgccattcacagcccaactcccatgtacccacctacataccctggagcctgggatcgggtaggtggactgcagtataccacgaagtcttgcctctgcatgcacctgtg #### Loxl4_ID8568_7 --> 2 - 0 Original Alignment ggCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTATGAGCGGACCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGT-CAACATGCAAACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG tgcagctgggtattgcataaaaggcttagcctccttctttttgtctgcagggCTAGGG---CTCCATCTGAGTGAGGTGCAATGCCGGGGGTATGAGCGGGCCCTGGGTGACTGCCTTGCCCTGGAAGGGTCACAGAATGGTTGTCCAACATGCAAATGATGCTGCTGTCAGGTGCAACATTCCAGATATGGGCTTCCAGAACAAGgtgagtttagcccttcttcaggcagaggcttagggtagcctaactgtgtt Alignment from CESAR ggCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTATGAGCGGACCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGT-CAACATGCAAACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG tgcagctgggtattgcataaaaggcttagcctccttctttttgtctgcagggCTAGGG---CTCCATCTGAGTGAGGTGCAATGCCGGGGGTATGAGCGGGCCCTGGGTGACTGCCTTGCCCTGGAAGGGTCACAGAATGGTTGTCCAACATGCAAATGATGCTGCTGTCAGGTGCAACATTCCAGATATGGGCTTCCAGAACAAGgtgagtttagcccttcttcaggcagaggcttagggtagcctaactgtgtt Alignment from Spaln_aa2Genome GGCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTATGAGCGGACCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGT-CAACATGCAAACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG tgcagctgggtattgcataaaaggcttagcctccttctttttgtctgcagGGCTAGGG---CTCCATCTGAGTGAGGTGCAATGCCGGGGGTATGAGCGGGCCCTGGGTGACTGCCTTGCCCTGGAAGGGTCACAGAATGGTTGTcCAACATGCAAATGATGCTGCTGTCAGGTGCAACATTCCAGATATGGGCTTCCAGAACAAGgtgagtttagcccttcttcaggcagaggcttagggtagcctaactgtgtt Alignment from Spaln_nt2Genome GGCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTATGAGCGGACCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGT-CAACATGCAAACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG tgcagctgggtattgcataaaaggcttagcctccttctttttgtctgcagGGCTAGGGC---TCCATCTGAGTGAGGTGCAATGCCGGGGGTATGAGCGGGCCCTGGGTGACTGCCTTGCCCTGGAAGGGTCACAGAATGGTTGTCCAACATGCAAATGATGCTGCTGTCAGGTGCAACATTCCAGATATGGGCTTCCAGAACAAGgtgagtttagcccttcttcaggcagaggcttagggtagcctaactgtgtt Alignment from Pairagon GGCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTATGAGCGGACCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGT-CAACATGCAAACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG tgcagctgggtattgcataaaaggcttagcctccttctttttgtctgcagGGCTAGGGC---TCCATCTGAGTGAGGTGCAATGCCGGGGGTATGAGCGGGCCCTGGGTGACTGCCTTGCCCTGGAAGGGTCACAGAATGGTTGTCCAACATGCAAATGATGCTGCTGTCAGGTGCAACATTCCAGATATGGGCTTCCAGAACAAGgtgagtttagcccttcttcaggcagaggcttagggtagcctaactgtgtt Alignment from Exonerate_protein2genome GGCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTATGAGCGGACCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGT-CAACATGCAAACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG tgcagctgggtattgcataaaaggcttagcctccttctttttgtctgcagGGCTAGGG---CTCCATCTGAGTGAGGTGCAATGCCGGGGGTATGAGCGGGCCCTGGGTGACTGCCTTGCCCTGGAAGGGTCACAGAATGGTTGTCCAACATGCAAATGATGCTGCTGTCAGGTGCAACATTCCAGATATGGGCTTCCAGAACAAGgtgagtttagcccttcttcaggcagaggcttagggtagcctaactgtgtt Alignment from Exonerate_coding2genome GGCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTATGAGCGGACCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGT-CAACATGCAAACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG tgcagctgggtattgcataaaaggcttagcctccttctttttgtctgcagGGCTAGGG---CTCCATCTGAGTGAGGTGCAATGCCGGGGGTATGAGCGGGCCCTGGGTGACTGCCTTGCCCTGGAAGGGTCACAGAATGGTTGTCCAACATGCAAATGATGCTGCTGTCAGGTGCAACATTCCAGATATGGGCTTCCAGAACAAGgtgagtttagcccttcttcaggcagaggcttagggtagcctaactgtgtt Alignment from GeneWise GGCTAGGACCCATCCACCTGAGTGAGGTGCGCTGCCGGGGGTATGAGCGGACCCTGGGTGACTGCCTTGCCCTGGAAGGGTCCCAGAATGGTTGT-CAACATGCAAACGACGCTGCTGTCAGGTGCAACATCCCAGACATGGGCTTCCAGAACAAG tgcagctgggtattgcataaaaggcttagcctccttctttttgtctgcagGGCTAGGG---CTCCATCTGAGTGAGGTGCAATGCCGGGGGTATGAGCGGGCCCTGGGTGACTGCCTTGCCCTGGAAGGGTCACAGAATGGTTGTCCAACATGCAAATGATGCTGCTGTCAGGTGCAACATTCCAGATATGGGCTTCCAGAACAAGgtgagtttagcccttcttcaggcagaggcttagggtagcctaactgtgtt #### Ltbp3_ID1253_5 --> 2 - 1 Original Alignment atACAGGGGTGCAGAAGCCT-GGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGg ccagtgttcccccccgttttgtcgctatacatatgggggtttctttccagatACAGGAGTTCAGAAACCTCGGACCTGTACGCGGGGAGGTGGGTGCTGACTGTCCCCAGGGCTATAAGAGGCTTAACAGCACCCACTGCCAGggtaagtttacctggagatcctgtggactgttagatgggccggaggtcatg Alignment from CESAR atACAGGGGTGCAGAAGCCT-GGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGg ccagtgttcccccccgttttgtcgctatacatatgggggtttctttccagatACAGGAGTTCAGAAACCTCGGACCTGTACGCGGGGAGGTGGGTGCTGACTGTCCCCAGGGCTATAAGAGGCTTAACAGCACCCACTGCCAGggtaagtttacctggagatcctgtggactgttagatgggccggaggtcatg Alignment from Spaln_aa2Genome ATACAGGGGTGCAGAAGCCT-GGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGG ccagtgttcccccccgttttgtcgctatacatatgggggtttctttccagATACAGGAGTTCAGAAACCTcGGACCTGTACGCGGGGAGGTGGGTGCTGACTGTCCCCAGGGCTATAAGAGGCTTAACAGCACCCACTGCCAGGgtaagtttacctggagatcctgtggactgttagatgggccggaggtcatg Alignment from Spaln_nt2Genome ATACAGGGGTGCAGAAGCCT-GGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGG ccagtgttcccccccgttttgtcgctatacatatgggggtttctttccagATACAGGAGTTCAGAAACCTCGGACCTGTACGCGGGGAGGTGGGTGCTGACTGTCCCCAGGGCTATAAGAGGCTTAACAGCACCCACTGCCAGGgtaagtttacctggagatcctgtggactgttagatgggccggaggtcatg Alignment from Pairagon ATACAGGGGTGCAGAAGCCT-GGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGG ccagtgttcccccccgttttgtcgctatacatatgggggtttctttccagATACAGGAGTTCAGAAACCTCGGACCTGTACGCGGGGAGGTGGGTGCTGACTGTCCCCAGGGCTATAAGAGGCTTAACAGCACCCACTGCCAGGgtaagtttacctggagatcctgtggactgttagatgggccggaggtcatg Alignment from Exonerate_protein2genome ATACAGGGGTGCAGAAGCCT-GGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGG ccagtgttcccccccgttttgtcgctatacatatgggggtttctttccagATACAGGAGTTCAGAAACCTCGGACCTGTACGCGGGGAGGTGGGTGCTGACTGTCCCCAGGGCTATAAGAGGCTTAACAGCACCCACTGCCAGGgtaagtttacctggagatcctgtggactgttagatgggccggaggtcatg Alignment from Exonerate_coding2genome ATACAGGGGTGCAGAAGCCT-GGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGG ccagtgttcccccccgttttgtcgctatacatatgggggtttctttccagATACAGGAGTTCAGAAACCTCGGACCTGTACGCGGGGAGGTGGGTGCTGACTGTCCCCAGGGCTATAAGAGGCTTAACAGCACCCACTGCCAGGgtaagtttacctggagatcctgtggactgttagatgggccggaggtcatg Alignment from GeneWise ATACAGGGGTGCAGAAGCCT-GGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGG ccagtgttcccccccgttttgtcgctatacatatgggggtttctttccagATACAGGAGTTCAGAAACCTCGGACCTGTACGCGGGGAGGTGGGTGCTGACTGTCCCCAGGGCTATAAGAGGCTTAACAGCACCCACTGCCAGGgtaagtttacctggagatcctgtggactgttagatgggccggaggtcatg #### Ltbp3_ID1254_6 --> 2 - 1 Original Alignment atATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGC-TTGGGTCCCTCGCGCACACAGTGCATTg gtttgctgccatgttatggcctcaactgttggtctgctctgctaacgaagatATAAATGAATGTGTGATGCCTGGCATGTGTCGTCATGGTGACTGTCTCACCAACCCTGGCTCTTATCACTGTGTCTGCCCGCCTGGTCATAGCCTTGGGTCCTTTTCGCACACAGTGCATAggtatgtttggggacaatcctggataagccagaggggaggagcatagtcaa Alignment from CESAR atATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGC-TTGGGTCCCTCGCGCACACAGTGCATTg gtttgctgccatgttatggcctcaactgttggtctgctctgctaacgaagatATAAATGAATGTGTGATGCCTGGCATGTGTCGTCATGGTGACTGTCTCACCAACCCTGGCTCTTATCACTGTGTCTGCCCGCCTGGTCATAGCCTTGGGTCCTTTTCGCACACAGTGCATAggtatgtttggggacaatcctggataagccagaggggaggagcatagtcaa Alignment from Spaln_aa2Genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGCTTGGGT-CCCTCGCGCACACAGTGCATTG gtttgctgccatgttatggcctcaactgttggtctgctctgctaacgaagATATAAATGAATGTGTGATGCCTGGCATGTGTCGTCATGGTGACTGTCTCACCAACCCTGGCTCTTATCACTGTGTCTGCCCGCCTGGTCATAGCCTTGGGtCCTTTTCGCACACAGTGCATAGgtatgtttggggacaatcctggataagccagaggggaggagcatagtcaa Alignment from Spaln_nt2Genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAG-CTTGGGTCCCTCGCGCACACAGTGCATTG gtttgctgccatgttatggcctcaactgttggtctgctctgctaacgaagATATAAATGAATGTGTGATGCCTGGCATGTGTCGTCATGGTGACTGTCTCACCAACCCTGGCTCTTATCACTGTGTCTGCCCGCCTGGTCATAGCCTTGGGTCCTTTTCGCACACAGTGCATAGgtatgtttggggacaatcctggataagccagaggggaggagcatagtcaa Alignment from Pairagon ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAG-CTTGGGTCCCTCGCGCACACAGTGCATTG gtttgctgccatgttatggcctcaactgttggtctgctctgctaacgaagATATAAATGAATGTGTGATGCCTGGCATGTGTCGTCATGGTGACTGTCTCACCAACCCTGGCTCTTATCACTGTGTCTGCCCGCCTGGTCATAGCCTTGGGTCCTTTTCGCACACAGTGCATAGgtatgtttggggacaatcctggataagccagaggggaggagcatagtcaa Alignment from Exonerate_protein2genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGC-TTGGGTCCCTCGCGCACACAGTGCATTG gtttgctgccatgttatggcctcaactgttggtctgctctgctaacgaagATATAAATGAATGTGTGATGCCTGGCATGTGTCGTCATGGTGACTGTCTCACCAACCCTGGCTCTTATCACTGTGTCTGCCCGCCTGGTCATAGCCTTGGGTCCTTTTCGCACACAGTGCATAGgtatgtttggggacaatcctggataagccagaggggaggagcatagtcaa Alignment from Exonerate_coding2genome ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCATAGC-TTGGGTCCCTCGCGCACACAGTGCATTG gtttgctgccatgttatggcctcaactgttggtctgctctgctaacgaagATATAAATGAATGTGTGATGCCTGGCATGTGTCGTCATGGTGACTGTCTCACCAACCCTGGCTCTTATCACTGTGTCTGCCCGCCTGGTCATAGCCTTGGGTCCTTTTCGCACACAGTGCATAGgtatgtttggggacaatcctggataagccagaggggaggagcatagtcaa Alignment from GeneWise ATATCAACGAATGTGCGATGCCTGGCATGTGTCGCCATGGTGACTGCCTCAACAACCCTGGCTCTTATCGCTGTGTCTGCCCGCCCGGTCAT-AGCTTGGGTCCCTCGCGCACACAGTGCATTG gtttgctgccatgttatggcctcaactgttggtctgctctgctaacgaagATATAAATGAATGTGTGATGCCTGGCATGTGTCGTCATGGTGACTGTCTCACCAACCCTGGCTCTTATCACTGTGTCTGCCCGCCTGGTCATAGCCTTGGGTCCTTTTCGCACACAGTGCATAGgtatgtttggggacaatcctggataagccagaggggaggagcatagtcaa #### Ltbp3_ID1258_10 --> 0 - 1 Original Alignment CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACC-TCACCCCCCCGGCCTTACCCAg ggggaaggcttgtggtaccatcaggagggtgtttctgcccaccgctttagCCGGTGAGTGAAGAGCGCTCAGTGCAGCAGAGCCACCCCACTACCACCACCCTCACCCCCTCGGCCTTACCTAggtaagagaggcaggggggggtgagctaatgaggcaggggggggtgagcta Alignment from CESAR CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACC-TCACCCCCCCGGCCTTACCCAg ggggaaggcttgtggtaccatcaggagggtgtttctgcccaccgctttagCCGGTGAGTGAAGAGCGCTCAGTGCAGCAGAGCCACCCCACTACCACCACCCTCACCCCCTCGGCCTTACCTAggtaagagaggcaggggggggtgagctaatgaggcaggggggggtgagcta Alignment from Spaln_aa2Genome CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACC-TCACCCCCCCGGCCTTACCCAG ggggaaggcttgtggtaccatcaggagggtgtttctgcccaccgctttagCCGGTGAGTGAAGAGCGCTCAGTGCAGCAGAGCCACCCCACTACCACCACCcTCACCCCCTCGGCCTTACCTAGgtaagagaggcaggggggggtgagctaatgaggcaggggggggtgagcta Alignment from Spaln_nt2Genome CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCAC-CTCACCCCCCCGGCCTTACCCAG ggggaaggcttgtggtaccatcaggagggtgtttctgcccaccgctttagCCGGTGAGTGAAGAGCGCTCAGTGCAGCAGAGCCACCCCACTACCACCACCCTCACCCCCTCGGCCTTACCTAGgtaagagaggcaggggggggtgagctaatgaggcaggggggggtgagcta Alignment from Pairagon CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCA-CCTCACCCCCCCGGCCTTACCCAG ggggaaggcttgtggtaccatcaggagggtgtttctgcccaccgctttagCCGGTGAGTGAAGAGCGCTCAGTGCAGCAGAGCCACCCCACTACCACCACCCTCACCCCCTCGGCCTTACCTAGgtaagagaggcaggggggggtgagctaatgaggcaggggggggtgagcta Alignment from Exonerate_protein2genome CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACC-TCACCCCCCCGGCCTTACCCAG ggggaaggcttgtggtaccatcaggagggtgtttctgcccaccgctttagCCGGTGAGTGAAGAGCGCTCAGTGCAGCAGAGCCACCCCACTACCACCACCCTCACCCCCTCGGCCTTACCTAGgtaagagaggcaggggggggtgagctaatgaggcaggggggggtgagcta Alignment from Exonerate_coding2genome GAGTGACCATGGATCCA------CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACC-TCACCCCCCCGGCCTTACCCAG ggggaaggcttgtggtaccatcaggagGGTGTTTCTGCCCACCGCTTTAGCCGGTGAGTGAAGAGCGCTCAGTGCAGCAGAGCCACCCCACTACCACCACCCTCACCCCCTCGGCCTTACCTAGgtaagagaggcaggggggggtgagctaatgaggcaggggggggtgagcta Alignment from GeneWise CCAGTGAGTGAGGAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACC-TCACCCCCCCGGCCTTACCCAG ggggaaggcttgtggtaccatcaggagggtgtttctgcccaccgctttagCCGGTGAGTGAAGAGCGCTCAGTGCAGCAGAGCCACCCCACTACCACCACCCTCACCCCCTCGGCCTTACCTAGgtaagagaggcaggggggggtgagctaatgaggcaggggggggtgagcta #### Ltbp3_ID1261_13 --> 2 - 1 Original Alignment atGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGC-TACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGg aacataactcacccagtccacccacatctgatgagtgttttctcttccagatGTGAATGAGTGTGGGGCAGAGCCCTGCGGCCCTGGAAAAGGTATCTGTATGACCACTGGTGGCTCTTACAATTGTCACTGCAACCGAGGCCTACCGCCTCCATGTGGGTGCAGGGGGCCGCTCATGTGTGggtaagaacaaatgggctagcccacacctgggtgtgggctgtttctactct Alignment from CESAR atGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGC-TACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGg aacataactcacccagtccacccacatctgatgagtgttttctcttccagatGTGAATGAGTGTGGGGCAGAGCCCTGCGGCCCTGGAAAAGGTATCTGTATGACCACTGGTGGCTCTTACAATTGTCACTGCAACCGAGGCCTACCGCCTCCATGTGGGTGCAGGGGGCCGCTCATGTGTGggtaagaacaaatgggctagcccacacctgggtgtgggctgtttctactct Alignment from Spaln_aa2Genome ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGC-TACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG aacataactcacccagtccacccacatctgatgagtgttttctcttccagATGTGAATGAGTGTGGGGCAGAGCCCTGCGGCCCTGGAAAAGGTATCTGTATGACCACTGGTGGCTCTTACAATTGTCACTGCAACCGAGGCcTACCGCCTCCATGTGGGTGCAGGGGGCCGCTCATGTGTGGgtaagaacaaatgggctagcccacacctgggtgtgggctgtttctactct Alignment from Spaln_nt2Genome ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGG-CTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG aacataactcacccagtccacccacatctgatgagtgttttctcttccagATGTGAATGAGTGTGGGGCAGAGCCCTGCGGCCCTGGAAAAGGTATCTGTATGACCACTGGTGGCTCTTACAATTGTCACTGCAACCGAGGCCTACCGCCTCCATGTGGGTGCAGGGGGCCGCTCATGTGTGGgtaagaacaaatgggctagcccacacctgggtgtgggctgtttctactct Alignment from Pairagon ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGG-CTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG aacataactcacccagtccacccacatctgatgagtgttttctcttccagATGTGAATGAGTGTGGGGCAGAGCCCTGCGGCCCTGGAAAAGGTATCTGTATGACCACTGGTGGCTCTTACAATTGTCACTGCAACCGAGGCCTACCGCCTCCATGTGGGTGCAGGGGGCCGCTCATGTGTGGgtaagaacaaatgggctagcccacacctgggtgtgggctgtttctactct Alignment from Exonerate_protein2genome ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGC-TACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG aacataactcacccagtccacccacatctgatgagtgttttctcttccagATGTGAATGAGTGTGGGGCAGAGCCCTGCGGCCCTGGAAAAGGTATCTGTATGACCACTGGTGGCTCTTACAATTGTCACTGCAACCGAGGCCTACCGCCTCCATGTGGGTGCAGGGGGCCGCTCATGTGTGGgtaagaacaaatgggctagcccacacctgggtgtgggctgtttctactct Alignment from Exonerate_coding2genome ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGC-TACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG aacataactcacccagtccacccacatctgatgagtgttttctcttccagATGTGAATGAGTGTGGGGCAGAGCCCTGCGGCCCTGGAAAAGGTATCTGTATGACCACTGGTGGCTCTTACAATTGTCACTGCAACCGAGGCCTACCGCCTCCATGTGGGTGCAGGGGGCCGCTCATGTGTGGgtaagaacaaatgggctagcccacacctgggtgtgggctgtttctactct Alignment from GeneWise ATGTGAACGAGTGCGAGGCAGAGCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGA-GGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG aacataactcacccagtccacccacatctgatgagtgttttctcttccagATGTGAATGAGTGTGGGGCAGAGCCCTGCGGCCCTGGAAAAGGTATCTGTATGACCACTGGTGGCTCTTACAATTGTCACTGCAACCGAGGCCTACCGCCTCCATGTGGGTGCAGGGGGCCGCTCATGTGTGGgtaagaacaaatgggctagcccacacctgggtgtgggctgtttctactct #### Ltbp3_ID1268_20 --> 2 - 1 Original Alignment agGTGGAGCAGCCCCACCAC-AAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAg tcagggctattatgactgtctctatgaacgtgtgccaattatctttacagagGTGGAGCAGCCCCACCATCAAGAAGGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCGTACTGGCGACTAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGTGAAATCTATCCCTGTCCCATCTACAGCTCAggtgagcgggatatatcgaatcgtggatctatcaaatcgttcctagaactc Alignment from CESAR agGTGGAGCAGCCCCACCAC-AAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAg tcagggctattatgactgtctctatgaacgtgtgccaattatctttacagagGTGGAGCAGCCCCACCATCAAGAAGGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCGTACTGGCGACTAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGTGAAATCTATCCCTGTCCCATCTACAGCTCAggtgagcgggatatatcgaatcgtggatctatcaaatcgttcctagaactc Alignment from Spaln_aa2Genome AGGTGGAGCAGCCCCACCAC-AAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG tcagggctattatgactgtctctatgaacgtgtgccaattatctttacagAGGTGGAGCAGCCCCACCATcAAGAAGGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCGTACTGGCGACTAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGTGAAATCTATCCCTGTCCCATCTACAGCTCAGgtgagcgggatatatcgaatcgtggatctatcaaatcgttcctagaactc Alignment from Spaln_nt2Genome AGGTGGAGCAGCCCCACCA-CAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG tcagggctattatgactgtctctatgaacgtgtgccaattatctttacagAGGTGGAGCAGCCCCACCATCAAGAAGGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCGTACTGGCGACTAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGTGAAATCTATCCCTGTCCCATCTACAGCTCAGgtgagcgggatatatcgaatcgtggatctatcaaatcgttcctagaactc Alignment from Pairagon AGGTGGAGCAGCCCCACCA-CAAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG tcagggctattatgactgtctctatgaacgtgtgccaattatctttacagAGGTGGAGCAGCCCCACCATCAAGAAGGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCGTACTGGCGACTAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGTGAAATCTATCCCTGTCCCATCTACAGCTCAGgtgagcgggatatatcgaatcgtggatctatcaaatcgttcctagaactc Alignment from Exonerate_protein2genome AGGTGGAGCAGCCCCACCAC-AAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG tcagggctattatgactgtctctatgaacgtgtgccaattatctttacagAGGTGGAGCAGCCCCACCATCAAGAAGGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCGTACTGGCGACTAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGTGAAATCTATCCCTGTCCCATCTACAGCTCAGgtgagcgggatatatcgaatcgtggatctatcaaatcgttcctagaactc Alignment from Exonerate_coding2genome AGGTGGAGCAGCCCCACCAC-AAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG tcagggctattatgactgtctctatgaacgtgtgccaattatctttacagAGGTGGAGCAGCCCCACCATCAAGAAGGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCGTACTGGCGACTAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGTGAAATCTATCCCTGTCCCATCTACAGCTCAGgtgagcgggatatatcgaatcgtggatctatcaaatcgttcctagaactc Alignment from GeneWise AGGTGGAGCAGCCCCACCAC-AAGAAGGAGTGCTACCTTAACTTCGATGACACAGTGTTCTGTGACAGCGTATTGGCTACCAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGCGAAATCTATCCCTGTCCAGTCTACAGCTCAG tcagggctattatgactgtctctatgaacgtgtgccaattatctttacagAGGTGGAGCAGCCCCACCATCAAGAAGGAGTGCTACCTTAACTTTGATGACACAGTGTTCTGTGACAGCGTACTGGCGACTAATGTCACTCAGCAGGAATGCTGTTGCTCTCTGGGAGCTGGTTGGGGAGACCACTGTGAAATCTATCCCTGTCCCATCTACAGCTCAGgtgagcgggatatatcgaatcgtggatctatcaaatcgttcctagaactc #### Ltbp3_ID1271_23 --> 2 - 1 Original Alignment acGTGGATGAGTGCTTGGAT-GAGTCTAACTGCAGGAACGGAGTGTGTGAGAACACACGTGGCGGCTACCGCTGTGCCTGCACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGg agtgctactcagggaaccagctgaactccctgtgtggtgacttttcacagatTTAGATGAGTGTTTGGATCGAGTCTAACTGCAGGAATGGTGTGTTTGAGAACACACGTGGTGGCTACCGCTGTGCTTGCACACCACCAGCTGAGTACAGTTCAGCACAGCACCAGTGTCTGAGCCCAGAGGAGATGggtgtgtgctagtgaaacagtttgctgaggcaggaactaccaaggggtgga Alignment from CESAR acGTGGATGAGTGCTTGGAT-GAGTCTAACTGCAGGAACGGAGTGTGTGAGAACACACGTGGCGGCTACCGCTGTGCCTGCACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGg agtgctactcagggaaccagctgaactccctgtgtggtgacttttcacagatTTAGATGAGTGTTTGGATCGAGTCTAACTGCAGGAATGGTGTGTTTGAGAACACACGTGGTGGCTACCGCTGTGCTTGCACACCACCAGCTGAGTACAGTTCAGCACAGCACCAGTGTCTGAGCCCAGAGGAGATGggtgtgtgctagtgaaacagtttgctgaggcaggaactaccaaggggtgga Alignment from Spaln_aa2Genome ACGTGGATGAGTGCTTGGAT-GAGTCTAACTGCAGGAACGGAGTGTGTGAGAACACACGTGGCGGCTACCGCTGTGCCTGCACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGG agtgctactcagggaaccagctgaactccctgtgtggtgacttttcacagATTTAGATGAGTGTTTGGATcGAGTCTAACTGCAGGAATGGTGTGTTTGAGAACACACGTGGTGGCTACCGCTGTGCTTGCACACCACCAGCTGAGTACAGTTCAGCACAGCACCAGTGTCTGAGCCCAGAGGAGATGGgtgtgtgctagtgaaacagtttgctgaggcaggaactaccaaggggtgga Alignment from Spaln_nt2Genome ACGTGGATGAGTGCTTGGAT-GAGTCTAACTGCAGGAACGGAGTGTGTGAGAACACACGTGGCGGCTACCGCTGTGCCTGCACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGG agtgctactcagggaaccagctgaactccctgtgtggtgacttttcacagATTTAGATGAGTGTTTGGATCGAGTCTAACTGCAGGAATGGTGTGTTTGAGAACACACGTGGTGGCTACCGCTGTGCTTGCACACCACCAGCTGAGTACAGTTCAGCACAGCACCAGTGTCTGAGCCCAGAGGAGATGGgtgtgtgctagtgaaacagtttgctgaggcaggaactaccaaggggtgga Alignment from Pairagon ACGTGGATGAGTGCTTGGAT-GAGTCTAACTGCAGGAACGGAGTGTGTGAGAACACACGTGGCGGCTACCGCTGTGCCTGCACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGG agtgctactcagggaaccagctgaactccctgtgtggtgacttttcacagATTTAGATGAGTGTTTGGATCGAGTCTAACTGCAGGAATGGTGTGTTTGAGAACACACGTGGTGGCTACCGCTGTGCTTGCACACCACCAGCTGAGTACAGTTCAGCACAGCACCAGTGTCTGAGCCCAGAGGAGATGGgtgtgtgctagtgaaacagtttgctgaggcaggaactaccaaggggtgga Alignment from Exonerate_protein2genome ACGTGGATGAGTGCTTGGAT-GAGTCTAACTGCAGGAACGGAGTGTGTGAGAACACACGTGGCGGCTACCGCTGTGCCTGCACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGG agtgctactcagggaaccagctgaactccctgtgtggtgacttttcacagATTTAGATGAGTGTTTGGATCGAGTCTAACTGCAGGAATGGTGTGTTTGAGAACACACGTGGTGGCTACCGCTGTGCTTGCACACCACCAGCTGAGTACAGTTCAGCACAGCACCAGTGTCTGAGCCCAGAGGAGATGGgtgtgtgctagtgaaacagtttgctgaggcaggaactaccaaggggtgga Alignment from Exonerate_coding2genome ACGTGGATGAGTGCTTGGAT-GAGTCTAACTGCAGGAACGGAGTGTGTGAGAACACACGTGGCGGCTACCGCTGTGCCTGCACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGG agtgctactcagggaaccagctgaactccctgtgtggtgacttttcacagATTTAGATGAGTGTTTGGATCGAGTCTAACTGCAGGAATGGTGTGTTTGAGAACACACGTGGTGGCTACCGCTGTGCTTGCACACCACCAGCTGAGTACAGTTCAGCACAGCACCAGTGTCTGAGCCCAGAGGAGATGGgtgtgtgctagtgaaacagtttgctgaggcaggaactaccaaggggtgga Alignment from GeneWise ACGTGGATGAGTGCTTGGAT-GAGTCTAACTGCAGGAACGGAGTGTGTGAGAACACACGTGGCGGCTACCGCTGTGCCTGCACGCCGCCGGCAGAGTACAGTCCCGCACAGCGCCAGTGTCTGAGCCCGGAGGAGATGG agtgctactcagggaaccagctgaactccctgtgtggtgacttttcacagATTTAGATGAGTGTTTGGATCGAGTCTAACTGCAGGAATGGTGTGTTTGAGAACACACGTGGTGGCTACCGCTGTGCTTGCACACCACCAGCTGAGTACAGTTCAGCACAGCACCAGTGTCTGAGCCCAGAGGAGATGGgtgtgtgctagtgaaacagtttgctgaggcaggaactaccaaggggtgga #### Ltbp3_ID1272_24 --> 2 - 1 Original Alignment agCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGA-GAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCg ggTCCC gtctcttttccccctccctccctcttgtcccttctttaactgttttacagagCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCGAGGACGAAGATGGTATGTGTATGGGGCCCCTAGCGGGACCTGCCCTCACTTTCGATGACTGTTGCTGCCGCCAGGGCCGTGGCTGGGGGACCCAGTGCAGACCATGCCCACCACGTGGTACTggtaagatatccctgatggatgaccttcaagcactctgtcttcagggTCCC Alignment from CESAR agCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGA-GAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCg ggTCCC gtctcttttccccctccctccctcttgtcccttctttaactgttttacagagCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCGAGGACGAAGATGGTATGTGTATGGGGCCCCTAGCGGGACCTGCCCTCACTTTCGATGACTGTTGCTGCCGCCAGGGCCGTGGCTGGGGGACCCAGTGCAGACCATGCCCACCACGTGGTACTggtaagatatccctgatggatgaaccttttcatcttgtgcttcagggTCCC Alignment from Spaln_aa2Genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGA-GAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC gtctcttttccccctccctccctcttgtcccttctttaactgttttacagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCGAGGAcGAAGATGGTATGTGTATGGGGCCCCTAGCGGGACCTGCCCTCACTTTCGATGACTGTTGCTGCCGCCAGGGCCGTGGCTGGGGGACCCAGTGCAGACCATGCCCACCACGTGGTACTGgtaagatatccctgatggatgaccttcaagcactctgtcttcagGGTCCC Alignment from Spaln_nt2Genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGA-GAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC gtctcttttccccctccctccctcttgtcccttctttaactgttttacagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCGAGGACGAAGATGGTATGTGTATGGGGCCCCTAGCGGGACCTGCCCTCACTTTCGATGACTGTTGCTGCCGCCAGGGCCGTGGCTGGGGGACCCAGTGCAGACCATGCCCACCACGTGGTACTGgtaagatatccctgatggatgaccttcaagcactctgtcttcagGGTCCC Alignment from Pairagon AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGA-GAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC gtctcttttccccctccctccctcttgtcccttctttaactgttttacagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCGAGGACGAAGATGGTATGTGTATGGGGCCCCTAGCGGGACCTGCCCTCACTTTCGATGACTGTTGCTGCCGCCAGGGCCGTGGCTGGGGGACCCAGTGCAGACCATGCCCACCACGTGGTACTGgtaagatatccctgatggatgaccttcaagcactctgtcttcagGGTCCC Alignment from Exonerate_protein2genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGA-GAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC gtctcttttccccctccctccctcttgtcccttctttaactgttttacagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCGAGGACGAAGATGGTATGTGTATGGGGCCCCTAGCGGGACCTGCCCTCACTTTCGATGACTGTTGCTGCCGCCAGGGCCGTGGCTGGGGGACCCAGTGCAGACCATGCCCACCACGTGGTACTGgtaagatatccctgatggatgaccttcaagcactctgtcttcagGGTCCC Alignment from Exonerate_coding2genome AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGA-GAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC gtctcttttccccctccctccctcttgtcccttctttaactgttttacagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCGAGGACGAAGATGGTATGTGTATGGGGCCCCTAGCGGGACCTGCCCTCACTTTCGATGACTGTTGCTGCCGCCAGGGCCGTGGCTGGGGGACCCAGTGCAGACCATGCCCACCACGTGGTACTGgtaagatatccctgatggatgaccttcaagcactctgtcttcagGGTCCC Alignment from GeneWise AGCACGCCCCAGAGAGACGTGAAGTGTGCTGGGGCCAGCGAGGA-GAGGACGGCATGTGTATGGGGCCCCTGGCGGGACCTGCCCTCACTTTTGATGACTGCTGCTGCCGCCAGGGCCGCGGCTGGGGTACCCAGTGCAGACCGTGCCCGCCACGTGGCACCG GGTCCC gtctcttttccccctccctccctcttgtcccttctttaactgttttacagAGCATGCCCCAGAAAGATGTGAAGTATGCTGGGGACAGCGAGGACGAAGATGGTATGTGTATGGGGCCCCTAGCGGGACCTGCCCTCACTTTCGATGACTGTTGCTGCCGCCAGGGCCGTGGCTGGGGGACCCAGTGCAGACCATGCCCACCACGTGGTACTGgtaagatatccctgatggatgaccttcaagcactctgtcttcagGGTCCC #### Ltbp3_ID1273_25 --> 2 - 1 Original Alignment GCACCg ggTCCCAGTGCCCGACTTCACAGAGTGAGAGCAATTCATTCTGGGACACAAGCCCCCTGCTACTG-GGGAAGTCTCCGCGAg GTACTggtgaggtatccctgatggatgaaccttttcatcttgtgcttcagggTCCCAGTGTCCAACTTTACAAAGTGAGAGCAACTCATTTTGGGACACTAGCCCCCTGCTACTCCGGT---------CGAggtgagtgaggctaaggggccaaacgtatagaagcccacttttagattttt Alignment from CESAR GCACCg ggTCCCAGTGCCCGACTTCACAGAGTGAGAGCAATTCATTCTGGGACACAAGCCCCCTGCTACTG-GGGAAGTCTCCGCGAg GTACTggtaagatatccctgatggatgaaccttttcatcttgtgcttcagggTCCCAGTGTCCAACTTTACAAAGTGAGAGCAACTCATTTTGGGACACTAGCCCCCTGCTACTCCGGT---------CGAggtgagtgaggctaaggggccaaacgtatagaagcccacttttagatgcct Alignment from Spaln_aa2Genome GCACCG GGTCCCAGTGCCCGACTTCACAGAGTGAGAGCAATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAGTCTCCGCGAG GTACTGgtgaggtatccctgatggatgaaccttttcatcttgtgcttcagGGTCCCAGTGTCCAACTTTACAAAGTGAGAGCAACTCATTTTGGGACACTAGCCCCCTGCTACTCCGGT--------CGAGgtgagtgaggctaaggggccaaacgtatagaagcccacttttagattttt Alignment from Spaln_nt2Genome GCACCG GGTCCCAGTGCCCGACTTCACAGAGTGAGAGCAATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAGTCTCCGCGAG GTACTGgtgaggtatccctgatggatgaaccttttcatcttgtgcttcagGGTCCCAGTGTCCAACTTTACAAAGTGAGAGCAACTCATTTTGGGACACTAGCCCCCTGCTACTCCGG--------TCGAGgtgagtgaggctaaggggccaaacgtatagaagcccacttttagattttt Alignment from Pairagon GCACCG GGTCCCAGTGCCCGACTTCACAGAGTGAGAGCAATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAGTCTCCG--CGAG GTACTGgtgaggtatccctgatggatgaaccttttcatcttgtgcttcagGGTCCCAGTGTCCAACTTTACAAAGTGAGAGCAACTCATTTTGGGACACTAGCCCCCTGCTA----------CTCCGGTCGAGgtgagtgaggctaaggggccaaacgtatagaagcccacttttagattttt Alignment from Exonerate_protein2genome GCACCG GGTCCCAGTGCCCGACTTCACAGAGTGAGAGCAATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAGTC GTACTGgtgaggtatccctgatggatgaaccttttcatcttgtgcttcagGGTCCCAGTGTCCAACTTTACAAAGTGAGAGCAACTCATTTTGGGACACTAGCCCCCTGCTACTCCGGTCGAGgtgagtgaggctaaggggccaaacgtatagaagcccacttttagattttt Alignment from Exonerate_coding2genome GCACCG GGTCCCAGTGCCCGACTTCACAGAGTGAGAGCAATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAGTC GTACTGgtgaggtatccctgatggatgaaccttttcatcttgtgcttcagGGTCCCAGTGTCCAACTTTACAAAGTGAGAGCAACTCATTTTGGGACACTAGCCCCCTGCTACTCCGGTCGAGgtgagtgaggctaaggggccaaacgtatagaagcccacttttagattttt Alignment from GeneWise GCACCG GGTCCCAGTGCCCGACTTCACAGAGTGAGAGCAATTCATTCTGGGACACAAGCCCCCTGCTACTGGGGAAGTC TCCG------------- GTACTGgtgaggtatccctgatggatgaaccttttcatcttgtgcttcagGGTCCCAGTGTCCAACTTTACAAAGTGAGAGCAACTCATTTTGGGACACTAGCCCCCTGCTACTCCGGTCGAGgtgagtgaggctaaggggccaaacgtatagaagCCCACTTTTAGATTTTT #### Ltbp3_ID1274_26 --> 2 - 1 Original Alignment acGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAG-TGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGg ccaaacgtatagaagcccacttttagatgcctgacacagctcactcgcagacGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTGATTGGGCACTGTGTGCCACGCCCAGGCGGGGCGGTATGTGAGCTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTTGTGTAggtaaacatgacattagggactgagggacagagtgcactgggtgcagactg Alignment from CESAR acGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAG-TGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGg ccaaacgtatagaagcccacttttagatgcctgacacagctcactcgcagacGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTGATTGGGCACTGTGTGCCACGCCCAGGCGGGGCGGTATGTGAGCTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTTGTGTAggtaaacatgacattagggactgagggacagagtgcactgggtgcagactg Alignment from Spaln_aa2Genome ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAG-TGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG ccaaacgtatagaagcccacttttagatgcctgacacagctcactcgcagACGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTGATTGGGCACTGTGTGCCACGCCCAGGCGGGGCGGTATGTGAGcTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTTGTGTAGgtaaacatgacattagggactgagggacagagtgcactgggtgcagactg Alignment from Spaln_nt2Genome GTCTCCGCGAGACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAG-TGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG ccaaacgtatagaagcccacttttagatgcctgacacagCTCACTCGCAGACGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTGATTGGGCACTGTGTGCCACGCCCAGGCGGGGCGGTATGTGAGCTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTTGTGTAGgtaaacatgacattagggactgagggacagagtgcactgggtgcagactg Alignment from Pairagon ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAG-TGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG ccaaacgtatagaagcccacttttagatgcctgacacagctcactcgcagACGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTGATTGGGCACTGTGTGCCACGCCCAGGCGGGGCGGTATGTGAGCTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTTGTGTAGgtaaacatgacattagggactgagggacagagtgcactgggtgcagactg Alignment from Exonerate_protein2genome ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAG-TGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG ccaaacgtatagaagcccacttttagatgcctgacacagctcactcgcagACGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTGATTGGGCACTGTGTGCCACGCCCAGGCGGGGCGGTATGTGAGCTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTTGTGTAGgtaaacatgacattagggactgagggacagagtgcactgggtgcagactg Alignment from Exonerate_coding2genome ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAG-TGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG ccaaacgtatagaagcccacttttagatgcctgacacagctcactcgcagACGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTGATTGGGCACTGTGTGCCACGCCCAGGCGGGGCGGTATGTGAGCTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTTGTGTAGgtaaacatgacattagggactgagggacagagtgcactgggtgcagactg Alignment from GeneWise ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGC-GAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG ccaaacgtatagaagcccacttttagatgcctgacacagctcactcgcagACGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTGATTGGGCACTGTGTGCCACGCCCAGGCGGGGCGGTATGTGAGCTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCCCGTTGTGTAGgtaaacatgacattagggactgagggacagagtgcactgggtgcagactg #### Macrod1_ID2054_9 --> 0 - 1 Original Alignment GTGGATCGGCTCATCATCTGTGTG-TTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAg gtaggccagtggaagtccagcctgagctgtttttctctctcttgatgtagGTGGATCGGCTCATCATCTGTGTGCTTCTTGGAGAAGGATGAGGGCATTTACAGGGAACGCCTTCCCCATTATTTCCCAGTAggtaggaacccattcctcctatgctcttggacatctacaatatcttccttc Alignment from CESAR GTGGATCGGCTCATCATCTGTGTG-TTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAg gtaggccagtggaagtccagcctgagctgtttttctctctcttgatgtagGTGGATCGGCTCATCATCTGTGTGCTTCTTGGAGAAGGATGAGGGCATTTACAGGGAACGCCTTCCCCATTATTTCCCAGTAggtaggaacccattcctcctatgctcttggacatcttttggtgtcctcttc Alignment from Spaln_aa2Genome GTGGATCGGCTCATCATCTGTGTG-TTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAG gtaggccagtggaagtccagcctgagctgtttttctctctcttgatgtagGTGGATCGGCTCATCATCTGTGTGcTTCTTGGAGAAGGATGAGGGCATTTACAGGGAACGCCTTCCCCATTATTTCCCAGTAGgtaggaacccattcctcctatgctcttggacatctacaatatcttccttc Alignment from Spaln_nt2Genome GTGGATCGGCTCATCATCTGTGTG-TTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAGCC gtaggccagtggaagtccagcctgagctgtttttctctctcttgatgtagGTGGATCGGCTCATCATCTGTGTGCTTCTTGGAGAAGGATGAGGGCATTTACAGGGAACGCCTTCCCCATTATTTCCCAGTAGGTaggaacccattcctcctatgctcttggacatctacaatatcttccttc Alignment from Pairagon GTGGATCGGCTCATCATCTGTGTG-TTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAGCC gtaggccagtggaagtccagcctgagctgtttttctctctcttgatgtagGTGGATCGGCTCATCATCTGTGTGCTTCTTGGAGAAGGATGAGGGCATTTACAGGGAACGCCTTCCCCATTATTTCCCAGTAGGTaggaacccattcctcctatgctcttggacatctacaatatcttccttc Alignment from Exonerate_protein2genome GTGGATCGGCTCATCATCTGTGTG-TTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTA gtaggccagtggaagtccagcctgagctgtttttctctctcttgatgtagGTGGATCGGCTCATCATCTGTGTGCTTCTTGGAGAAGGATGAGGGCATTTACAGGGAACGCCTTCCCCATTATTTCCCAGTAggtaggaacccattcctcctatgctcttggacatctacaatatcttccttc Alignment from Exonerate_coding2genome GTGGATCGGCTCATCATCTGTGTG-TTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTA gtaggccagtggaagtccagcctgagctgtttttctctctcttgatgtagGTGGATCGGCTCATCATCTGTGTGCTTCTTGGAGAAGGATGAGGGCATTTACAGGGAACGCCTTCCCCATTATTTCCCAGTAggtaggaacccattcctcctatgctcttggacatctacaatatcttccttc Alignment from GeneWise GTGGATCGGCTCATCATCTGT-GTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAGCC gtaggccagtggaagtccagcctgagctgtttttctctctcttgatgtagGTGGATCGGCTCATCATCTGTGTGCTTCTTGGAGAAGGATGAGGGCATTTACAGGGAACGCCTTCCCCATTATTTCCCAGTAGGTaggaacccattcctcctatgctcttggacatctacaatatcttccttc #### Map3k11_ID1206_7 --> 2 - 2 Original Alignment tgGAACCTACAGAATCAGGC-CAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGag atccctgctcgctgtaaacatggactccgtgattttttttctttcaacagtgGAACCTACAGAATCAGGCCCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAAGATTCTAGCAATGGAGAGAGGCGTGCCTGCTGGGCCTGGGGTCCCGCCTCCCCCAAGCCTGGGGAGGCCCAAAATGGGaggtgagtgcttcagcacacttatgccctggtgttctactttttgggggcct Alignment from CESAR tgGAACCTACAGAATCAGGC-CAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGag atccctgctcgctgtaaacatggactccgtgattttttttctttcaacagtgGAACCTACAGAATCAGGCCCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAAGATTCTAGCAATGGAGAGAGGCGTGCCTGCTGGGCCTGGGGTCCCGCCTCCCCCAAGCCTGGGGAGGCCCAAAATGGGaggtgagtgcttcagcacacttatgccctggtgttctactttttgggggcct Alignment from Spaln_aa2Genome TGGAACCTACAGAATCAGGC-CAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG atccctgctcgctgtaaacatggactccgtgattttttttctttcaacagTGGAACCTACAGAATCAGGCcCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAAGATTCTAGCAATGGAGAGAGGCGTGCCTGCTGGGCCTGGGGTCCCGCCTCCCCCAAGCCTGGGGAGGCCCAAAATGGGAGgtgagtgcttcagcacacttatgccctggtgttctactttttgggggcct Alignment from Spaln_nt2Genome TGGAACCTACAGAATCAGG-CCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG atccctgctcgctgtaaacatggactccgtgattttttttctttcaacagTGGAACCTACAGAATCAGGCCCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAAGATTCTAGCAATGGAGAGAGGCGTGCCTGCTGGGCCTGGGGTCCCGCCTCCCCCAAGCCTGGGGAGGCCCAAAATGGGAGgtgagtgcttcagcacacttatgccctggtgttctactttttgggggcct Alignment from Pairagon TGGAACCTACAGAATCAGG-CCAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG atccctgctcgctgtaaacatggactccgtgattttttttctttcaacagTGGAACCTACAGAATCAGGCCCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAAGATTCTAGCAATGGAGAGAGGCGTGCCTGCTGGGCCTGGGGTCCCGCCTCCCCCAAGCCTGGGGAGGCCCAAAATGGGAGgtgagtgcttcagcacacttatgccctggtgttctactttttgggggcct Alignment from Exonerate_protein2genome TGGAACCTACAGAATCAGGC-CAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG atccctgctcgctgtaaacatggactccgtgattttttttctttcaacagTGGAACCTACAGAATCAGGCCCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAAGATTCTAGCAATGGAGAGAGGCGTGCCTGCTGGGCCTGGGGTCCCGCCTCCCCCAAGCCTGGGGAGGCCCAAAATGGGAGgtgagtgcttcagcacacttatgccctggtgttctactttttgggggcct Alignment from Exonerate_coding2genome TGGAACCTACAGAATCAGGC-CAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG atccctgctcgctgtaaacatggactccgtgattttttttctttcaacagTGGAACCTACAGAATCAGGCCCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAAGATTCTAGCAATGGAGAGAGGCGTGCCTGCTGGGCCTGGGGTCCCGCCTCCCCCAAGCCTGGGGAGGCCCAAAATGGGAGgtgagtgcttcagcacacttatgccctggtgttctactttttgggggcct Alignment from GeneWise TGGAACCTACAGAATCAGGC-CAGACTTGGGGTCGCCAGTCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG atccctgctcgctgtaaacatggactccgtgattttttttctttcaacagTGGAACCTACAGAATCAGGCCCAGACTTGGAGTCGCCAGTCTCCCGGACGTCTTGAAGATTCTAGCAATGGAGAGAGGCGTGCCTGCTGGGCCTGGGGTCCCGCCTCCCCCAAGCCTGGGGAGGCCCAAAATGGGAGgtgagtgcttcagcacacttatgccctggtgttctactttttgggggcct #### Map4k2_ID1627_6 --> 0 - 0 Original Alignment GGGCTCCACCACCTGCAT-TCTCAGGGGAAAATTCACCGAGACATTAAG ttgttgaaatctccatatagccggaactcccgctctcctggattctccagGGCCTCCACCACCTGCATCTCTCAGGGAAAAATTCACCGAGACATTAAGgtcagtgttcaaccaagtgcatggttcaagtgaggaggaagcctagaggc Alignment from CESAR GGGCTCCACCACCTGCAT-TCTCAGGGGAAAATTCACCGAGACATTAAG ttgttgaaatctccatatagccggaactcccgctctcctggattctccagGGCCTCCACCACCTGCATCTCTCAGGGAAAAATTCACCGAGACATTAAGgtcagtgttcaaccaagtgcatggttcaagtgaggaggaagcctagaggc Alignment from Spaln_aa2Genome GGGCTCCACCACCTGCAT-TCTCAGGGGAAAATTCACCGAGACATTAAG ttgttgaaatctccatatagccggaactcccgctctcctggattctccagGGCCTCCACCACCTGCATcTCTCAGGGAAAAATTCACCGAGACATTAAGgtcagtgttcaaccaagtgcatggttcaagtgaggaggaagcctagaggc Alignment from Spaln_nt2Genome GGGCTCCACCACCTGCAT-TCTCAGGGGAAAATTCACCGAGACATTAAG ttgttgaaatctccatatagccggaactcccgctctcctggattctccagGGCCTCCACCACCTGCATCTCTCAGGGAAAAATTCACCGAGACATTAAGgtcagtgttcaaccaagtgcatggttcaagtgaggaggaagcctagaggc Alignment from Pairagon GGGCTCCACCACCTGCAT-TCTCAGGGGAAAATTCACCGAGACATTAAG ttgttgaaatctccatatagccggaactcccgctctcctggattctccagGGCCTCCACCACCTGCATCTCTCAGGGAAAAATTCACCGAGACATTAAGgtcagtgttcaaccaagtgcatggttcaagtgaggaggaagcctagaggc Alignment from Exonerate_protein2genome GGGCTCCACCACCTGCAT-TCTCAGGGGAAAATTCACCGAGACATTAAG ttgttgaaatctccatatagccggaactcccgctctcctggattctccagGGCCTCCACCACCTGCATCTCTCAGGGAAAAATTCACCGAGACATTAAGgtcagtgttcaaccaagtgcatggttcaagtgaggaggaagcctagaggc Alignment from Exonerate_coding2genome GGGCTCCACCACCTGCAT-TCTCAGGGGAAAATTCACCGAGACATTAAG ttgttgaaatctccatatagccggaactcccgctctcctggattctccagGGCCTCCACCACCTGCATCTCTCAGGGAAAAATTCACCGAGACATTAAGgtcagtgttcaaccaagtgcatggttcaagtgaggaggaagcctagaggc Alignment from GeneWise GGGCTCCACCACCTGCAT-TCTCAGGGGAAAATTCACCGAGACATTAAG ttgttgaaatctccatatagccggaactcccgctctcctggattctccagGGCCTCCACCACCTGCATCTCTCAGGGAAAAATTCACCGAGACATTAAGgtcagtgttcaaccaagtgcatggttcaagtgaggaggaagcctagaggc #### Map4k2_ID1630_9 --> 1 - 2 Original Alignment gATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGG-GCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGag gggcatatggagaggacacccagacttctatgcttctcaattgctatcaggATGGCCCCAGAAGTTGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTATGTGACGTCTGGCGCATTGGGTATCACTACAATTGAATTGAGTGAGCTCCAACCTCCACTGTTCCACCTGCACCCCATGaggtgagtttagcactcgcctcttacctgtccccctgatgatccttgacagc Alignment from CESAR gATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGG-GCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGag gggcatatggagaggacacccagacttctatgcttctcaattgctatcaggATGGCCCCAGAAGTTGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTATGTGACGTCTGGCGCATTGGGTATCACTACAATTGAATTGAGTGAGCTCCAACCTCCACTGTTCCACCTGCACCCCATGaggtgagtttagcactcgcctcttacctgtccccctgatgatccttgacttg Alignment from Spaln_aa2Genome GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGG-GCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGAG gggcatatggagaggacacccagacttctatgcttctcaattgctatcagGATGGCCCCAGAAGTTGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTATGTGACGTCTGGcGCATTGGGTATCACTACAATTGAATTGAGTGAGCTCCAACCTCCACTGTTCCACCTGCACCCCATGAGgtgagtttagcactcgcctcttacctgtccccctgatgatccttgacagc Alignment from Spaln_nt2Genome GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGG-GCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGAG gggcatatggagaggacacccagacttctatgcttctcaattgctatcagGATGGCCCCAGAAGTTGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTATGTGACGTCTGGCGCATTGGGTATCACTACAATTGAATTGAGTGAGCTCCAACCTCCACTGTTCCACCTGCACCCCATGAGgtgagtttagcactcgcctcttacctgtccccctgatgatccttgacagc Alignment from Pairagon GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGG-GCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGAG gggcatatggagaggacacccagacttctatgcttctcaattgctatcagGATGGCCCCAGAAGTTGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTATGTGACGTCTGGCGCATTGGGTATCACTACAATTGAATTGAGTGAGCTCCAACCTCCACTGTTCCACCTGCACCCCATGAGgtgagtttagcactcgcctcttacctgtccccctgatgatccttgacagc Alignment from Exonerate_protein2genome GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGG-GCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGAG gggcatatggagaggacacccagacttctatgcttctcaattgctatcagGATGGCCCCAGAAGTTGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTATGTGACGTCTGGCGCATTGGGTATCACTACAATTGAATTGAGTGAGCTCCAACCTCCACTGTTCCACCTGCACCCCATGAGgtgagtttagcactcgcctcttacctgtccccctgatgatccttgacagc Alignment from Exonerate_coding2genome GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGG-GCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGAG gggcatatggagaggacacccagacttctatgcttctcaattgctatcagGATGGCCCCAGAAGTTGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTATGTGACGTCTGGCGCATTGGGTATCACTACAATTGAATTGAGTGAGCTCCAACCTCCACTGTTCCACCTGCACCCCATGAGgtgagtttagcactcgcctcttacctgtccccctgatgatccttgacagc Alignment from GeneWise GATGGCACCAGAGGTTGCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGG-GCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGAG gggcatatggagaggacacccagacttctatgcttctcaattgctatcagGATGGCCCCAGAAGTTGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTATGTGACGTCTGGCGCATTGGGTATCACTACAATTGAATTGAGTGAGCTCCAACCTCCACTGTTCCACCTGCACCCCATGAGgtgagtttagcactcgcctcttacctgtccccctgatgatccttgacagc #### Map4k2_ID1636_15 --> 0 - 2 Original Alignment TGGGAGGAGGAGTGGACG-CTCCTGGGAAAAGAGGAACTGAGTgg cttcccattttgtgtctacttctcttcaagtgtgcctttatgtccttcagTGGGAGGAGGAGTGGACGCCTCCTGGGAAAAGAGGAACTGAGTgggtgggcgagtgaggttgggaaagcagaggtgcaggcagaaccctattgaa Alignment from CESAR TGGGAGGAGGAGTGGACG-CTCCTGGGAAAAGAGGAACTGAGTgg cttcccattttgtgtctacttctcttcaagtgtgcctttatgtccttcagTGGGAGGAGGAGTGGACGCCTCCTGGGAAAAGAGGAACTGAGTgggtgggcgagtgaggttgggaaagcagaggtgcaggcagaaccctattgaa Alignment from Spaln_aa2Genome TGGGAGGAGGAGTGGACG-CTCCTGGGAAAAGAGGAACTGAGTGG cttcccattttgtgtctacttctcttcaagtgtgcctttatgtccttcagTGGGAGGAGGAGTGGACGcCTCCTGGGAAAAGAGGAACTGAGTGGgtgggcgagtgaggttgggaaagcagaggtgcaggcagaaccctattgaa Alignment from Spaln_nt2Genome TGGGAGGAGGAGTGGACG-CTCCTGGGAAAAGAGGAACTGAGTGG cttcccattttgtgtctacttctcttcaagtgtgcctttatgtccttcagTGGGAGGAGGAGTGGACGCCTCCTGGGAAAAGAGGAACTGAGTGGgtgggcgagtgaggttgggaaagcagaggtgcaggcagaaccctattgaa Alignment from Pairagon TGGGAGGAGGAGTGGACG-CTCCTGGGAAAAGAGGAACTGAGTGG cttcccattttgtgtctacttctcttcaagtgtgcctttatgtccttcagTGGGAGGAGGAGTGGACGCCTCCTGGGAAAAGAGGAACTGAGTGGgtgggcgagtgaggttgggaaagcagaggtgcaggcagaaccctattgaa Alignment from Exonerate_protein2genome TGGGAGGAGGAGTGGACG-CTCCTGGGAAAAGAGGAACTGAGTGG cttcccattttgtgtctacttctcttcaagtgtgcctttatgtccttcagTGGGAGGAGGAGTGGACGCCTCCTGGGAAAAGAGGAACTGAGTGGgtgggcgagtgaggttgggaaagcagaggtgcaggcagaaccctattgaa Alignment from Exonerate_coding2genome TGGGAGGAGGAGTGGACG-CTCCTGGGAAAAGAGGAACTGAGTGG cttcccattttgtgtctacttctcttcaagtgtgcctttatgtccttcagTGGGAGGAGGAGTGGACGCCTCCTGGGAAAAGAGGAACTGAGTGGgtgggcgagtgaggttgggaaagcagaggtgcaggcagaaccctattgaa Alignment from GeneWise TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGGGAGCCT cttcccattttgtgtctacttctcttcaagtgtgcctttatgtccttcagTGGGAGGAGGAGTGGACGCCTCCTGGGAAAAGA---------GGAACTGAgtgggtgggcgagtgaggttgggaaagcagaggtgcaggcagaaccctattgaa #### Map4k2_ID1638_17 --> 1 - 0 Original Alignment gAGCCTGACTATCCGGCCA-GCCTTAGAACTCCAG agacagccccctctcacacataataatattctcttttatatttatcctaggAGCCTGGCTATCCGGCCACGCCTTAGAACTCCAGgtgtgcgttgaagagtgtagtacttgaaaaggactcataagctagtgtgc Alignment from CESAR gAGCCTGACTATCCGGCCA-GCCTTAGAACTCCAG agacagccccctctcacacataataatattctcttttatatttatcctaggAGCCTGGCTATCCGGCCACGCCTTAGAACTCCAGgtgtgcgttgaagagtgtagtacttgaaaaggactcataagctagtgtgc Alignment from Spaln_aa2Genome GAGCCTGACTATCCGGCCAGCCTTAGAACTCCAGGAG agacagccccctctcacacataataatattctcttttatatttatcctagGAGCCTGGCTATCCGGCCACGCCTTAGAACTCCAGGTgtgcgttgaagagtgtagtacttgaaaaggactcataagctagtgtgc Alignment from Spaln_nt2Genome GAGCCTGACTATCCGGCCA-GCCTTAGAACTCCAG agacagccccctctcacacataataatattctcttttatatttatcctagGAGCCTGGCTATCCGGCCACGCCTTAGAACTCCAGgtgtgcgttgaagagtgtagtacttgaaaaggactcataagctagtgtgc Alignment from Pairagon GAGCCTGACTATCCGGCCA-GCCTTAGAACTCCAG agacagccccctctcacacataataatattctcttttatatttatcctagGAGCCTGGCTATCCGGCCACGCCTTAGAACTCCAGgtgtgcgttgaagagtgtagtacttgaaaaggactcataagctagtgtgc Alignment from Exonerate_protein2genome agacagccccctctcacacataataatattctcttttatatttatcctaggagcctggctatccggccacgccttagaactccaggtgtgcgttgaagagtgtagtacttgaaaaggactcataagctagtgtgc Alignment from Exonerate_coding2genome agacagccccctctcacacataataatattctcttttatatttatcctaggagcctggctatccggccacgccttagaactccaggtgtgcgttgaagagtgtagtacttgaaaaggactcataagctagtgtgc Alignment from GeneWise agacagccccctctcacacataataatattctcttttatatttatcctaggagcctggctatccggccacgccttagaactccaggtgtgcgttgaagagtgtagtacttgaaaaggactcataagctagtgtgc #### Map4k2_ID1641_20 --> 0 - 0 Original Alignment CGATCATCCTGCCATGGGCTT-CCTCCCACCCCCAAGGTGCAC gatgctgcagggcgccatctgagtcctgtaacaggagttttttttaaaagCGGTCATCCTGCCATGGGCTTCCCTCCCACCCCTAAGGTCCATgtgagtggtcatggctgtccctaggccctggtgtcctggccctgcacatt Alignment from CESAR CGATCATCCTGCCATGGGCTT-CCTCCCACCCCCAAGGTGCAC gatgctgcagggcgccatctgagtcctgtaacaggagttttttttaaaagCGGTCATCCTGCCATGGGCTTCCCTCCCACCCCTAAGGTCCATgtgagtggtcatggctgtccctaggccctggtgtcctggccctgcacatt Alignment from Spaln_aa2Genome CGATCATCCTGCCATGGGCTTCCT-CCCACCCCCAAGGTGCAC gatgctgcagggcgccatctgagtcctgtaacaggagttttttttaaaagCGGTCATCCTGCCATGGGCTTCCCtCCCACCCCTAAGGTCCATgtgagtggtcatggctgtccctaggccctggtgtcctggccctgcacatt Alignment from Spaln_nt2Genome CGATCATCCTGCCATGGGCTTCC-TCCCACCCCCAAGGTGCAC gatgctgcagggcgccatctgagtcctgtaacaggagttttttttaaaagCGGTCATCCTGCCATGGGCTTCCCTCCCACCCCTAAGGTCCATgtgagtggtcatggctgtccctaggccctggtgtcctggccctgcacatt Alignment from Pairagon CGATCATCCTGCCATGGGCTT-CCTCCCACCCCCAAGGTGCAC gatgctgcagggcgccatctgagtcctgtaacaggagttttttttaaaagCGGTCATCCTGCCATGGGCTTCCCTCCCACCCCTAAGGTCCATgtgagtggtcatggctgtccctaggccctggtgtcctggccctgcacatt Alignment from Exonerate_protein2genome CGATCATCCTGCCATGGGCTT-CCTCCCACCCCCAAGGTGCAC gatgctgcagggcgccatctgagtcctgtaacaggagttttttttaaaagCGGTCATCCTGCCATGGGCTTCCCTCCCACCCCTAAGGTCCATgtgagtggtcatggctgtccctaggccctggtgtcctggccctgcacatt Alignment from Exonerate_coding2genome CGATCATCCTGCCATGGGCTT-CCTCCCACCCCCAAGGTGCAC gatgctgcagggcgccatctgagtcctgtaacaggagttttttttaaaagCGGTCATCCTGCCATGGGCTTCCCTCCCACCCCTAAGGTCCATgtgagtggtcatggctgtccctaggccctggtgtcctggccctgcacatt Alignment from GeneWise CGATCATCCTGCCATGGG-CTTCCTCCCACCCCCAAGGTGCAC gatgctgcagggcgccatctgagtcctgtaacaggagttttttttaaaagCGGTCATCCTGCCATGGGCTTCCCTCCCACCCCTAAGGTCCATgtgagtggtcatggctgtccctaggccctggtgtcctggccctgcacatt #### Map4k2_ID1642_21 --> 0 - 1 Original Alignment ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCT-GTCACTTGGGTTCACCCTGTGACTCGAg tgctaagtgtaggttagctgtaaattggaacatctaacattctcctacagATGGGTGCCTGCTTCTCCAAGGTCTTTAATGGCTGCCCCCTGCAGATCCATGCTGCTCGTCACTTGGGTTCACCCTGTGACTCGAggtgagtgtaggtagactagaagcaataacttaggccaccctgaccttggg Alignment from CESAR ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCT-GTCACTTGGGTTCACCCTGTGACTCGAg tgctaagtgtaggttagctgtaaattggaacatctaacattctcctacagATGGGTGCCTGCTTCTCCAAGGTCTTTAATGGCTGCCCCCTGCAGATCCATGCTGCTCGTCACTTGGGTTCACCCTGTGACTCGAggtgagtgtaggtagactagaagcaataacttaggccaccctgaccttggg Alignment from Spaln_aa2Genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCT-GTCACTTGGGTTCACCCTGTGACTCGAG tgctaagtgtaggttagctgtaaattggaacatctaacattctcctacagATGGGTGCCTGCTTCTCCAAGGTCTTTAATGGCTGCCCCCTGCAGATCCATGCTGCTcGTCACTTGGGTTCACCCTGTGACTCGAGgtgagtgtaggtagactagaagcaataacttaggccaccctgaccttggg Alignment from Spaln_nt2Genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCT-GTCACTTGGGTTCACCCTGTGACTCGAG tgctaagtgtaggttagctgtaaattggaacatctaacattctcctacagATGGGTGCCTGCTTCTCCAAGGTCTTTAATGGCTGCCCCCTGCAGATCCATGCTGCTCGTCACTTGGGTTCACCCTGTGACTCGAGgtgagtgtaggtagactagaagcaataacttaggccaccctgaccttggg Alignment from Pairagon ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCT-GTCACTTGGGTTCACCCTGTGACTCGAG tgctaagtgtaggttagctgtaaattggaacatctaacattctcctacagATGGGTGCCTGCTTCTCCAAGGTCTTTAATGGCTGCCCCCTGCAGATCCATGCTGCTCGTCACTTGGGTTCACCCTGTGACTCGAGgtgagtgtaggtagactagaagcaataacttaggccaccctgaccttggg Alignment from Exonerate_protein2genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCT-GTCACTTGGGTTCACCCTGTGACTCGAG tgctaagtgtaggttagctgtaaattggaacatctaacattctcctacagATGGGTGCCTGCTTCTCCAAGGTCTTTAATGGCTGCCCCCTGCAGATCCATGCTGCTCGTCACTTGGGTTCACCCTGTGACTCGAGgtgagtgtaggtagactagaagcaataacttaggccaccctgaccttggg Alignment from Exonerate_coding2genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCTGCT-GTCACTTGGGTTCACCCTGTGACTCGAG tgctaagtgtaggttagctgtaaattggaacatctaacattctcctacagATGGGTGCCTGCTTCTCCAAGGTCTTTAATGGCTGCCCCCTGCAGATCCATGCTGCTCGTCACTTGGGTTCACCCTGTGACTCGAGgtgagtgtaggtagactagaagcaataacttaggccaccctgaccttggg Alignment from GeneWise ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCCCTGCAGATCCATGCT-GCTGTCACTTGGGTTCACCCTGTGACTCGAG tgctaagtgtaggttagctgtaaattggaacatctaacattctcctacagATGGGTGCCTGCTTCTCCAAGGTCTTTAATGGCTGCCCCCTGCAGATCCATGCTGCTCGTCACTTGGGTTCACCCTGTGACTCGAGgtgagtgtaggtagactagaagcaataacttaggccaccctgaccttggg #### Map4k2_ID1644_23 --> 0 - 1 Original Alignment TGGAGAAG CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAAC-AATGTGTTGCTGTCGCTCTCAg TGGAGAAGgtatttcttgttggccctcctgaccctcttctttgcccacagCTCATCTCTCAGCGCTGCTCGTGGCTCTACTGTGTGAACCAATGTGTTGCTGTCACTCTCAggtaggtgctggcagatgtagaggcagccacaacagcactctcctaatttt Alignment from CESAR TGGAGAAG CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAAC-AATGTGTTGCTGTCGCTCTCAg TGGAGAAGgtaattcttgttggccctcctgaccctcttctttgcccacagCTCATCTCTCAGCGCTGCTCGTGGCTCTACTGTGTGAACCAATGTGTTGCTGTCACTCTCAggtaggtgctggcagatgtagaggcagccacaacagcactctcctaatttt Alignment from Spaln_aa2Genome TGGAGAAG CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAAC-AATGTGTTGCTGTCGCTCTCAG TGGAGAAGgtatttcttgttggccctcctgaccctcttctttgcccacagCTCATCTCTCAGCGCTGCTCGTGGCTCTACTGTGTGAACcAATGTGTTGCTGTCACTCTCAGgtaggtgctggcagatgtagaggcagccacaacagcactctcctaatttt Alignment from Spaln_nt2Genome TGGAGAAG CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAAC-AATGTGTTGCTGTCGCTCTCAG TGGAGAAGgtatttcttgttggccctcctgaccctcttctttgcccacagCTCATCTCTCAGCGCTGCTCGTGGCTCTACTGTGTGAACCAATGTGTTGCTGTCACTCTCAGgtaggtgctggcagatgtagaggcagccacaacagcactctcctaatttt Alignment from Pairagon TGGAGAAG CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAA-CAATGTGTTGCTGTCGCTCTCAG TGGAGAAGgtatttcttgttggccctcctgaccctcttctttgcccacagCTCATCTCTCAGCGCTGCTCGTGGCTCTACTGTGTGAACCAATGTGTTGCTGTCACTCTCAGgtaggtgctggcagatgtagaggcagccacaacagcactctcctaatttt Alignment from Exonerate_protein2genome TGGAGAAG CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAAC-AATGTGTTGCTGTCGCTCTCAG TGGAGAAGgtatttcttgttggccctcctgaccctcttctttgcccacagCTCATCTCTCAGCGCTGCTCGTGGCTCTACTGTGTGAACCAATGTGTTGCTGTCACTCTCAGgtaggtgctggcagatgtagaggcagccacaacagcactctcctaatttt Alignment from Exonerate_coding2genome TGGAGAAG CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAAC-AATGTGTTGCTGTCGCTCTCAG TGGAGAAGgtatttcttgttggccctcctgaccctcttctttgcccacagCTCATCTCTCAGCGCTGCTCGTGGCTCTACTGTGTGAACCAATGTGTTGCTGTCACTCTCAGgtaggtgctggcagatgtagaggcagccacaacagcactctcctaatttt Alignment from GeneWise TGGAGAAG------------------------------------------CTCATCTCCCAGCGCTGCTCCTGGCTCTACTGTGTGAACAATGTG TGGAGAAGGTATTTCTTGTTGGCCCTCCTGACCCTCTTCTTTGCCCACAGCTCATCTCTCAGCGCTGCTCGTGGCTCTACTGTGTGAACCAATGTgttgctgtcactctcaggtaggtgctggcagatgtagaggcagccacaacagcactctcctaatttt #### Map4k2_ID1647_26 --> 2 - 0 Original Alignment ttCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAG-CCACTGCAGAAATTCCTGCTGCTGAAG ggagggatgctgtgaggctggcccctcctctatcccccatctcctttcagtaCGAAATCCCTATACCAGCAGTACATTCCTGCTGGCTGCCCTGCCTGCAAGCCTGCTACTGTTGGAATGGTATGAGCCCTCTGCAGAAATTCCTGCTGCTAAAGgtattcgactggaggaccattaaggaggaggggagccaacagactgaaaa Alignment from CESAR ttCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAG-CCACTGCAGAAATTCCTGCTGCTGAAG ggagggatgctgtgaggctggcccctcctctatcccccatctcctttcagtaCGAAATCCCTATACCAGCAGTACATTCCTGCTGGCTGCCCTGCCTGCAAGCCTGCTACTGTTGGAATGGTATGAGCCCTCTGCAGAAATTCCTGCTGCTAAAGgtattcgactggaggaccattaaggaggaggggagccaacagactgaaaa Alignment from Spaln_aa2Genome TTCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCA-CTGCAGAAATTCCTGCTGCTGAAG ggagggatgctgtgaggctggcccctcctctatcccccatctcctttcagTACGAAATCCCTATACCAGCAGTACATTCCTGCTGGCTGCCCTGCCTGCAAGCCTGCTACTGTTGGAATGGTATGAGCCCtCTGCAGAAATTCCTGCTGCTAAAGgtattcgactggaggaccattaaggaggaggggagccaacagactgaaaa Alignment from Spaln_nt2Genome TTCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCA-CTGCAGAAATTCCTGCTGCTGAAG ggagggatgctgtgaggctggcccctcctctatcccccatctcctttcagTACGAAATCCCTATACCAGCAGTACATTCCTGCTGGCTGCCCTGCCTGCAAGCCTGCTACTGTTGGAATGGTATGAGCCCTCTGCAGAAATTCCTGCTGCTAAAGgtattcgactggaggaccattaaggaggaggggagccaacagactgaaaa Alignment from Pairagon TTCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCA-CTGCAGAAATTCCTGCTGCTGAAG ggagggatgctgtgaggctggcccctcctctatcccccatctcctttcagTACGAAATCCCTATACCAGCAGTACATTCCTGCTGGCTGCCCTGCCTGCAAGCCTGCTACTGTTGGAATGGTATGAGCCCTCTGCAGAAATTCCTGCTGCTAAAGgtattcgactggaggaccattaaggaggaggggagccaacagactgaaaa Alignment from Exonerate_protein2genome TTCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAG-CCACTGCAGAAATTCCTGCTGCTGAAG ggagggatgctgtgaggctggcccctcctctatcccccatctcctttcagTACGAAATCCCTATACCAGCAGTACATTCCTGCTGGCTGCCCTGCCTGCAAGCCTGCTACTGTTGGAATGGTATGAGCCCTCTGCAGAAATTCCTGCTGCTAAAGgtattcgactggaggaccattaaggaggaggggagccaacagactgaaaa Alignment from Exonerate_coding2genome TTCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAG-CCACTGCAGAAATTCCTGCTGCTGAAG ggagggatgctgtgaggctggcccctcctctatcccccatctcctttcagTACGAAATCCCTATACCAGCAGTACATTCCTGCTGGCTGCCCTGCCTGCAAGCCTGCTACTGTTGGAATGGTATGAGCCCTCTGCAGAAATTCCTGCTGCTAAAGgtattcgactggaggaccattaaggaggaggggagccaacagactgaaaa Alignment from GeneWise TTCGAAACCCCTATACCGGCAGTACGTTCCTGCTGGCCGCCCTGCCTGCCAGCCTGCTTCTGCTGCAATGGTATGAGCCA-CTGCAGAAATTCCTGCTGCTGAAG ggagggatgctgtgaggctggcccctcctctatcccccatctcctttcagTACGAAATCCCTATACCAGCAGTACATTCCTGCTGGCTGCCCTGCCTGCAAGCCTGCTACTGTTGGAATGGTATGAGCCCTCTGCAGAAATTCCTGCTGCTAAAGgtattcgactggaggaccattaaggaggaggggagccaacagactgaaaa #### Map4k2_ID1650_29 --> 2 - 1 Original Alignment gcTGTGTGAGAATTGTTAACCTGCAGGGGGAACCCACGGCTGCACTTGCCCCT-GAACTAACCTTTGACTTCACTATTGAGACTGTGg tttaagcaagcaagccaggtgtaaatacctatcccattaatattttgcaggcTGTGTAAGGATTGTTAACCTACAGGGGGAACCTACTGCTGCACTTGCACCTCGAACTAACCTTTGACTTCACCATTGAGACTGTGggtactaatggcagtggtggacgcaataatatctagtctagaagtctgtaa Alignment from CESAR gcTGTGTGAGAATTGTTAACCTGCAGGGGGAACCCACGGCTGCACTTGCCCCT-GAACTAACCTTTGACTTCACTATTGAGACTGTGg tttaagcaagcaagccaggtgtaaatacctatcccattaatattttgcaggcTGTGTAAGGATTGTTAACCTACAGGGGGAACCTACTGCTGCACTTGCACCTCGAACTAACCTTTGACTTCACCATTGAGACTGTGggtactaatggcagtggtggacgcaataatatctagtctagaagtctgtaa Alignment from Spaln_aa2Genome GCTGTGTGAGAATTGTTAACCTGCAGGGGGAACCCACGGCTGCACTTGCCCCT-GAACTAACCTTTGACTTCACTATTGAGACTGTGG tttaagcaagcaagccaggtgtaaatacctatcccattaatattttgcagGCTGTGTAAGGATTGTTAACCTACAGGGGGAACCTACTGCTGCACTTGCACCTcGAACTAACCTTTGACTTCACCATTGAGACTGTGGgtactaatggcagtggtggacgcaataatatctagtctagaagtctgtaa Alignment from Spaln_nt2Genome GCTGTGTGAGAATTGTTAACCTGCAGGGGGAACCCACGGCTGCACTTGCC-CCTGAACTAACCTTTGACTTCACTATTGAGACTGTGG tttaagcaagcaagccaggtgtaaatacctatcccattaatattttgcagGCTGTGTAAGGATTGTTAACCTACAGGGGGAACCTACTGCTGCACTTGCACCTCGAACTAACCTTTGACTTCACCATTGAGACTGTGGgtactaatggcagtggtggacgcaataatatctagtctagaagtctgtaa Alignment from Pairagon GCTGTGTGAGAATTGTTAACCTGCAGGGGGAACCCACGGCTGCACTTGCCCCT-GAACTAACCTTTGACTTCACTATTGAGACTGTGG tttaagcaagcaagccaggtgtaaatacctatcccattaatattttgcagGCTGTGTAAGGATTGTTAACCTACAGGGGGAACCTACTGCTGCACTTGCACCTCGAACTAACCTTTGACTTCACCATTGAGACTGTGGgtactaatggcagtggtggacgcaataatatctagtctagaagtctgtaa Alignment from Exonerate_protein2genome GCTGTGTGAGAATTGTTAACCTGCAGGGGGAACCCACGGCTGCACTTGCCCCT-GAACTAACCTTTGACTTCACTATTGAGACTGTGG tttaagcaagcaagccaggtgtaaatacctatcccattaatattttgcagGCTGTGTAAGGATTGTTAACCTACAGGGGGAACCTACTGCTGCACTTGCACCTCGAACTAACCTTTGACTTCACCATTGAGACTGTGGgtactaatggcagtggtggacgcaataatatctagtctagaagtctgtaa Alignment from Exonerate_coding2genome GCTGTGTGAGAATTGTTAACCTGCAGGGGGAACCCACGGCTGCACTTGCCCCT-GAACTAACCTTTGACTTCACTATTGAGACTGTGG tttaagcaagcaagccaggtgtaaatacctatcccattaatattttgcagGCTGTGTAAGGATTGTTAACCTACAGGGGGAACCTACTGCTGCACTTGCACCTCGAACTAACCTTTGACTTCACCATTGAGACTGTGGgtactaatggcagtggtggacgcaataatatctagtctagaagtctgtaa Alignment from GeneWise GCTGTGTGAGAATTGTTAACCTGCAGGGGGAACCCACGGCTGCACTTGCCCCT-GAACTAACCTTTGACTTCACTATTGAGACTGTGG tttaagcaagcaagccaggtgtaaatacctatcccattaatattttgcagGCTGTGTAAGGATTGTTAACCTACAGGGGGAACCTACTGCTGCACTTGCACCTCGAACTAACCTTTGACTTCACCATTGAGACTGTGGgtactaatggcagtggtggacgcaataatatctagtctagaagtctgtaa #### Mark2_ID2106_15 --> 1 - 2 Original Alignment cCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAAC-TGTGAGGTGCCTCGGCCCag aaggcactcactccctataacccttcataatactttatcttcttctgtagcCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACCTGTGAGGTGCCTCAGCCCaggtgagtttgtggggatagctgatgtacatttccaatggcatgttgcacac Alignment from CESAR cCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAAC-TGTGAGGTGCCTCGGCCCag aaggcactcactccctataacccttcataatactttatcttcttctgtagcCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACCTGTGAGGTGCCTCAGCCCaggtgagtttgtggggatagctgatgtacatttccaatggcatgttgcacac Alignment from Spaln_aa2Genome CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAAC-TGTGAGGTGCCTCGGCCCAG aaggcactcactccctataacccttcataatactttatcttcttctgtagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACcTGTGAGGTGCCTCAGCCCAGgtgagtttgtggggatagctgatgtacatttccaatggcatgttgcacac Alignment from Spaln_nt2Genome CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAAC-TGTGAGGTGCCTCGGCCCAG aaggcactcactccctataacccttcataatactttatcttcttctgtagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACCTGTGAGGTGCCTCAGCCCAGgtgagtttgtggggatagctgatgtacatttccaatggcatgttgcacac Alignment from Pairagon CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAA-CTGTGAGGTGCCTCGGCCCAG aaggcactcactccctataacccttcataatactttatcttcttctgtagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACCTGTGAGGTGCCTCAGCCCAGgtgagtttgtggggatagctgatgtacatttccaatggcatgttgcacac Alignment from Exonerate_protein2genome CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAAC-TGTGAGGTGCCTCGGCCCAG aaggcactcactccctataacccttcataatactttatcttcttctgtagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACCTGTGAGGTGCCTCAGCCCAGgtgagtttgtggggatagctgatgtacatttccaatggcatgttgcacac Alignment from Exonerate_coding2genome CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGTAAC-TGTGAGGTGCCTCGGCCCAG aaggcactcactccctataacccttcataatactttatcttcttctgtagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACCTGTGAGGTGCCTCAGCCCAGgtgagtttgtggggatagctgatgtacatttccaatggcatgttgcacac Alignment from GeneWise CCTAACCATGCCAGGGTCCCGGGCCTCCACGGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCCTCTGGGTTGCCCCCCACGGAGAGT-AACTGTGAGGTGCCTCGGCCCAG aaggcactcactccctataacccttcataatactttatcttcttctgtagCCTAACCATGCCAGGATCCCGGGCCTCCACAGCTTCTGCTTCTGCCGCAGTCTCTGCGGCCCGGCCCCGCCAGCACCAGAAATCCATGTCTGCCTCCGTACACCCCAACAAGGCTTCTGGGTTGCCCCCCACGGAGAGTAACCTGTGAGGTGCCTCAGCCCAGgtgagtttgtggggatagctgatgtacatttccaatggcatgttgcacac #### Mark2_ID2107_14 --> 0 - 2 Original Alignment AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGAC-AGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACag agtctgattggacaacactagagtccattcaccatctcccgtgtccctagAACAGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCGCTTTTGGACCAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACaggtaggttaactggactgcttagcatggtcccgggggtggcttcaccaggg Alignment from CESAR AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGAC-AGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACag agtctgattggacaacactagagtccattcaccatctcccgtgtccctagAACAGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCGCTTTTGGACCAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACaggtaggttaactggactgcttagcatggtcccgggggtggcttcaccaggg Alignment from Spaln_aa2Genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGAC-AGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agtctgattggacaacactagagtccattcaccatctcccgtgtccctagAACAGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCGCTTTTGGACcAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACAGgtaggttaactggactgcttagcatggtcccgggggtggcttcaccaggg Alignment from Spaln_nt2Genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGA-CAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agtctgattggacaacactagagtccattcaccatctcccgtgtccctagAACAGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCGCTTTTGGACCAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACAGgtaggttaactggactgcttagcatggtcccgggggtggcttcaccaggg Alignment from Pairagon AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGA-CAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agtctgattggacaacactagagtccattcaccatctcccgtgtccctagAACAGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCGCTTTTGGACCAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACAGgtaggttaactggactgcttagcatggtcccgggggtggcttcaccaggg Alignment from Exonerate_protein2genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGAC-AGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agtctgattggacaacactagagtccattcaccatctcccgtgtccctagAACAGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCGCTTTTGGACCAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACAGgtaggttaactggactgcttagcatggtcccgggggtggcttcaccaggg Alignment from Exonerate_coding2genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGAC-AGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agtctgattggacaacactagagtccattcaccatctcccgtgtccctagAACAGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCGCTTTTGGACCAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACAGgtaggttaactggactgcttagcatggtcccgggggtggcttcaccaggg Alignment from GeneWise AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTGGAC-AGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agtctgattggacaacactagagtccattcaccatctcccgtgtccctagAACAGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCGCTTTTGGACCAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACAGgtaggttaactggactgcttagcatggtcccgggggtggcttcaccaggg #### Mark2_ID2108_13 --> 2 - 0 Original Alignment ccGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACT-CAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggatcttcaggtgactgtagtcttatactcacctctactttctgcagctGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAAACGGGGCGGAAAGCCAGCAGCACTGCCAAAGTGCCCACCAGCCCTCTGCCAGGCCTGGACAGGAAGAAGACTACACCTGCGCCCTCCACAgtgagtcttgagctactacccacgggcctggcctcccccttctctgctct Alignment from CESAR ccGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACT-CAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggatcttcaggtgactgtagtcttatactcacctctactttctgcagctGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAAACGGGGCGGAAAGCCAGCAGCACTGCCAAAGTGCCCACCAGCCCTCTGCCAGGCCTGGACAGGAAGAAGACTACACCTGCGCCCTCCACAgtgagtcttgagctactacccacgggcctggcctcccccttctctgctct Alignment from Spaln_aa2Genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACT-CAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggatcttcaggtgactgtagtcttatactcacctctactttctgcagCTGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGACTcCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAAACGGGGCGGAAAGCCAGCAGCACTGCCAAAGTGCCCACCAGCCCTCTGCCAGGCCTGGACAGGAAGAAGACTACACCTGCGCCCTCCACAgtgagtcttgagctactacccacgggcctggcctcccccttctctgctct Alignment from Spaln_nt2Genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACT-CAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggatcttcaggtgactgtagtcttatactcacctctactttctgcagCTGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAAACGGGGCGGAAAGCCAGCAGCACTGCCAAAGTGCCCACCAGCCCTCTGCCAGGCCTGGACAGGAAGAAGACTACACCTGCGCCCTCCACAgtgagtcttgagctactacccacgggcctggcctcccccttctctgctct Alignment from Pairagon CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACT-CAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggatcttcaggtgactgtagtcttatactcacctctactttctgcagCTGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAAACGGGGCGGAAAGCCAGCAGCACTGCCAAAGTGCCCACCAGCCCTCTGCCAGGCCTGGACAGGAAGAAGACTACACCTGCGCCCTCCACAgtgagtcttgagctactacccacgggcctggcctcccccttctctgctct Alignment from Exonerate_protein2genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACT-CAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggatcttcaggtgactgtagtcttatactcacctctactttctgcagCTGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAAACGGGGCGGAAAGCCAGCAGCACTGCCAAAGTGCCCACCAGCCCTCTGCCAGGCCTGGACAGGAAGAAGACTACACCTGCGCCCTCCACAgtgagtcttgagctactacccacgggcctggcctcccccttctctgctct Alignment from Exonerate_coding2genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACT-CAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggatcttcaggtgactgtagtcttatactcacctctactttctgcagCTGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAAACGGGGCGGAAAGCCAGCAGCACTGCCAAAGTGCCCACCAGCCCTCTGCCAGGCCTGGACAGGAAGAAGACTACACCTGCGCCCTCCACAgtgagtcttgagctactacccacgggcctggcctcccccttctctgctct Alignment from GeneWise CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAG-ACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG attggatcttcaggtgactgtagtcttatactcacctctactttctgcagCTGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCCAGAGTAACAACGCAGAAAATAAGCGACCCGAGGAAGAAACGGGGCGGAAAGCCAGCAGCACTGCCAAAGTGCCCACCAGCCCTCTGCCAGGCCTGGACAGGAAGAAGACTACACCTGCGCCCTCCACAgtgagtcttgagctactacccacgggcctggcctcccccttctctgctct #### Mark2_ID2114_7 --> 0 - 0 Original Alignment ATAGTGTCTGCTGTG-CAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG ttccgcctccttgtttcactctcagatgtcttttccttctgtgtctccagATAGTGTCTGCTGTGCCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAGgtgagttatgttcctgtccctatgacttgctgtgagtgggccaggtggcc Alignment from CESAR ATAGTGTCTGCTGTG-CAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG ttccgcctccttgtttcactctcagatgtcttttccttctgtgtctccagATAGTGTCTGCTGTGCCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAGgtgagttatgttcctgtccctatgacttgctgtgagtgggccaggtggcc Alignment from Spaln_aa2Genome TACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG ttccgcctccttgtttcactctcagatgtcttttccttctgtgtctccagatagtgtctgctgtgccagTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAGgtgagttatgttcctgtccctatgacttgctgtgagtgggccaggtggcc Alignment from Spaln_nt2Genome ATAGTGTCTGCTGTG-CAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG ttccgcctccttgtttcactctcagatgtcttttccttctgtgtctccagATAGTGTCTGCTGTGCCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAGgtgagttatgttcctgtccctatgacttgctgtgagtgggccaggtggcc Alignment from Pairagon ATAGTGTCTGCTGTG-CAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG ttccgcctccttgtttcactctcagatgtcttttccttctgtgtctccagATAGTGTCTGCTGTGCCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAGgtgagttatgttcctgtccctatgacttgctgtgagtgggccaggtggcc Alignment from Exonerate_protein2genome ATAGTGTCTGCTGTG-CAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG ttccgcctccttgtttcactctcagatgtcttttccttctgtgtctccagATAGTGTCTGCTGTGCCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAGgtgagttatgttcctgtccctatgacttgctgtgagtgggccaggtggcc Alignment from Exonerate_coding2genome ATAGTGTCTGCTGTG-CAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG ttccgcctccttgtttcactctcagatgtcttttccttctgtgtctccagATAGTGTCTGCTGTGCCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAGgtgagttatgttcctgtccctatgacttgctgtgagtgggccaggtggcc Alignment from GeneWise ---TCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG ttccgcctccttgtttcactctcagatgtcttttccttctgtgtctccagatagTGTCTGCTGTGCCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAGgtgagttatgttcctgtccctatgacttgctgtgagtgggccaggtggcc #### Mark2_ID2115_6 --> 2 - 0 Original Alignment gaGAGGTGTTTGATTACCTAGTGGCC-CATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG caaccctcacccattatactcacagtcgtcttcattcctgttctttctaggaGAGGTGTTTGATTACCTAGTGGCTCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTCCGCCAGgtaaaagtgtctccactcttggctgtagatgtagcatgaggatatggcac Alignment from CESAR gaGAGGTGTTTGATTACCTAGTGGCC-CATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG caaccctcacccattatactcacagtcgtcttcattcctgttctttctaggaGAGGTGTTTGATTACCTAGTGGCTCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTCCGCCAGgtaaaagtgtctccactcttggctgtagatgtagcatgaggatatggcac Alignment from Spaln_aa2Genome GAGAGGTGTTTGATTACCTAGTGGCC-CATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG caaccctcacccattatactcacagtcgtcttcattcctgttctttctagGAGAGGTGTTTGATTACCTAGTGGCTcCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTCCGCCAGgtaaaagtgtctccactcttggctgtagatgtagcatgaggatatggcac Alignment from Spaln_nt2Genome GAGAGGTGTTTGATTACCTAGTGGC-CCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG caaccctcacccattatactcacagtcgtcttcattcctgttctttctagGAGAGGTGTTTGATTACCTAGTGGCTCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTCCGCCAGgtaaaagtgtctccactcttggctgtagatgtagcatgaggatatggcac Alignment from Pairagon GAGAGGTGTTTGATTACCTAGTGGC-CCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG caaccctcacccattatactcacagtcgtcttcattcctgttctttctagGAGAGGTGTTTGATTACCTAGTGGCTCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTCCGCCAGgtaaaagtgtctccactcttggctgtagatgtagcatgaggatatggcac Alignment from Exonerate_protein2genome GAGAGGTGTTTGATTACCTAGTGGCC-CATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG caaccctcacccattatactcacagtcgtcttcattcctgttctttctagGAGAGGTGTTTGATTACCTAGTGGCTCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTCCGCCAGgtaaaagtgtctccactcttggctgtagatgtagcatgaggatatggcac Alignment from Exonerate_coding2genome GAGAGGTGTTTGATTACCTAGTGGCC-CATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG caaccctcacccattatactcacagtcgtcttcattcctgttctttctagGAGAGGTGTTTGATTACCTAGTGGCTCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTCCGCCAGgtaaaagtgtctccactcttggctgtagatgtagcatgaggatatggcac Alignment from GeneWise GAGAGGTGTTTGATTACCTAGTG-GCCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG caaccctcacccattatactcacagtcgtcttcattcctgttctttctagGAGAGGTGTTTGATTACCTAGTGGCTCCATGGCAGGATGAAAGAAAAAGAAGCTCGAGCCAAATTCCGCCAGgtaaaagtgtctccactcttggctgtagatgtagcatgaggatatggcac #### Mark2_ID2116_5 --> 2 - 1 Original Alignment ttAAGTTGTTTGAAGTGATCGAGACTGAGAAGACT-CTCTACCTTGTCATGGAGTATGCCAGTGGCg aatctggacacaggtgtgcctctgagccacttaatcatgtgcatttttagttAAGTGGTTTGAGGTCATTGATACTGAGAAGACACCTCTACCTTGTTATGGAGTATGCCAGTGGTggtaagtctgaaactgtcccccatgtttgtccctcgcctctctgctcttgg Alignment from CESAR ttAAGTTGTTTGAAGTGATCGAGACTGAGAAGACT-CTCTACCTTGTCATGGAGTATGCCAGTGGCg aatctggacacaggtgtgcctctgagccacttaatcatgtgcatttttagttAAGTGGTTTGAGGTCATTGATACTGAGAAGACACCTCTACCTTGTTATGGAGTATGCCAGTGGTggtaagtctgaaactgtcccccatgtttgtccctcgcctctctgctcttgg Alignment from Spaln_aa2Genome TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGACT-CTCTACCTTGTCATGGAGTATGCCAGTGGCG aatctggacacaggtgtgcctctgagccacttaatcatgtgcatttttagTTAAGTGGTTTGAGGTCATTGATACTGAGAAGACAcCTCTACCTTGTTATGGAGTATGCCAGTGGTGgtaagtctgaaactgtcccccatgtttgtccctcgcctctctgctcttgg Alignment from Spaln_nt2Genome TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGACTC-TCTACCTTGTCATGGAGTATGCCAGTGGCG aatctggacacaggtgtgcctctgagccacttaatcatgtgcatttttagTTAAGTGGTTTGAGGTCATTGATACTGAGAAGACACCTCTACCTTGTTATGGAGTATGCCAGTGGTGgtaagtctgaaactgtcccccatgtttgtccctcgcctctctgctcttgg Alignment from Pairagon TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGAC-TCTCTACCTTGTCATGGAGTATGCCAGTGGCG aatctggacacaggtgtgcctctgagccacttaatcatgtgcatttttagTTAAGTGGTTTGAGGTCATTGATACTGAGAAGACACCTCTACCTTGTTATGGAGTATGCCAGTGGTGgtaagtctgaaactgtcccccatgtttgtccctcgcctctctgctcttgg Alignment from Exonerate_protein2genome TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGACT-CTCTACCTTGTCATGGAGTATGCCAGTGGCG aatctggacacaggtgtgcctctgagccacttaatcatgtgcatttttagTTAAGTGGTTTGAGGTCATTGATACTGAGAAGACACCTCTACCTTGTTATGGAGTATGCCAGTGGTGgtaagtctgaaactgtcccccatgtttgtccctcgcctctctgctcttgg Alignment from Exonerate_coding2genome TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGACT-CTCTACCTTGTCATGGAGTATGCCAGTGGCG aatctggacacaggtgtgcctctgagccacttaatcatgtgcatttttagTTAAGTGGTTTGAGGTCATTGATACTGAGAAGACACCTCTACCTTGTTATGGAGTATGCCAGTGGTGgtaagtctgaaactgtcccccatgtttgtccctcgcctctctgctcttgg Alignment from GeneWise TTAAGTTGTTTGAAGTGATCGAGACTGAGAAGACT-CTCTACCTTGTCATGGAGTATGCCAGTGGCG aatctggacacaggtgtgcctctgagccacttaatcatgtgcatttttagTTAAGTGGTTTGAGGTCATTGATACTGAGAAGACACCTCTACCTTGTTATGGAGTATGCCAGTGGTGgtaagtctgaaactgtcccccatgtttgtccctcgcctctctgctcttgg #### Mrpl11_ID768_3 --> 0 - 1 Original Alignment CCCGACAGGACATTTGAG-CTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAg ttgaactggatggaaaatggagagattctcattcgtggctttgtctctagCCTGACAGGACTTTTGAACCTCAAGATTGGGCAGCCTACTGTTTCTTACTTGCTGAAGGCAGCTGCTGGGATTGAGAAGGGAGCTCGGCATACAggtgaatacaagtttgacagctgggtgtctgaggaatctcgagaaatgtaa Alignment from CESAR CCCGACAGGACATTTGAG-CTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAg ttgaactggatggaaaatggagagattctcattcgtggctttgtctctagCCTGACAGGACTTTTGAACCTCAAGATTGGGCAGCCTACTGTTTCTTACTTGCTGAAGGCAGCTGCTGGGATTGAGAAGGGAGCTCGGCATACAggtgaatacaagtttgacagctgggtgtctgaggaatctcgagaaatgtaa Alignment from Spaln_aa2Genome CCCGACAGGACATTTGAG-CTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatggaaaatggagagattctcattcgtggctttgtctctagCCTGACAGGACTTTTGAAcCTCAAGATTGGGCAGCCTACTGTTTCTTACTTGCTGAAGGCAGCTGCTGGGATTGAGAAGGGAGCTCGGCATACAGgtgaatacaagtttgacagctgggtgtctgaggaatctcgagaaatgtaa Alignment from Spaln_nt2Genome CCCGACAGGACATTTGAGC-TCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatggaaaatggagagattctcattcgtggctttgtctctagCCTGACAGGACTTTTGAACCTCAAGATTGGGCAGCCTACTGTTTCTTACTTGCTGAAGGCAGCTGCTGGGATTGAGAAGGGAGCTCGGCATACAGgtgaatacaagtttgacagctgggtgtctgaggaatctcgagaaatgtaa Alignment from Pairagon CCCGACAGGACATTTGAG-CTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatggaaaatggagagattctcattcgtggctttgtctctagCCTGACAGGACTTTTGAACCTCAAGATTGGGCAGCCTACTGTTTCTTACTTGCTGAAGGCAGCTGCTGGGATTGAGAAGGGAGCTCGGCATACAGgtgaatacaagtttgacagctgggtgtctgaggaatctcgagaaatgtaa Alignment from Exonerate_protein2genome CCCGACAGGACATTTGAG-CTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatggaaaatggagagattctcattcgtggctttgtctctagCCTGACAGGACTTTTGAACCTCAAGATTGGGCAGCCTACTGTTTCTTACTTGCTGAAGGCAGCTGCTGGGATTGAGAAGGGAGCTCGGCATACAGgtgaatacaagtttgacagctgggtgtctgaggaatctcgagaaatgtaa Alignment from Exonerate_coding2genome CCCGACAGGACATTTGAG-CTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatggaaaatggagagattctcattcgtggctttgtctctagCCTGACAGGACTTTTGAACCTCAAGATTGGGCAGCCTACTGTTTCTTACTTGCTGAAGGCAGCTGCTGGGATTGAGAAGGGAGCTCGGCATACAGgtgaatacaagtttgacagctgggtgtctgaggaatctcgagaaatgtaa Alignment from GeneWise CCCGACAGGACATTTGAG-CTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactggatggaaaatggagagattctcattcgtggctttgtctctagCCTGACAGGACTTTTGAACCTCAAGATTGGGCAGCCTACTGTTTCTTACTTGCTGAAGGCAGCTGCTGGGATTGAGAAGGGAGCTCGGCATACAGgtgaatacaagtttgacagctgggtgtctgaggaatctcgagaaatgtaa #### Ms4a2_ID3240_5 --> 0 - 0 Original Alignment GTGAGAGGCAGCCTGGGAGCAAACATTGTCAGTAGCATCGCTGCAGGGACGGGGATCGCCATGCTGATCCTCAATCTGACCAATAACTTCGCTTATATGAACAACTGCAAGAATGTAACCGAAGACGACGGC-TGCTTTGTGGCTTCTTTCACCACA taaccagggtgtggacacacttacaaaccttgggtttctctcctttttagGTGAGAGGCAGCCTGGGAGCAAACATTGTCAGTAGCATTGCTGCAGGGACGGGGATTGCCATGCTGATCCTCAATCTGACCAATAACTTCGCTTATATGAACAACTGCAAGAATGTTACCGAAGACGACGGTCTGTTTTGTGGCTTCTTTCACGACAgtgaggatttctggggaaaatccaaactctctgtgacctgtggtacccta Alignment from CESAR GTGAGAGGCAGCCTGGGAGCAAACATTGTCAGTAGCATCGCTGCAGGGACGGGGATCGCCATGCTGATCCTCAATCTGACCAATAACTTCGCTTATATGAACAACTGCAAGAATGTAACCGAAGACGACGGC-TGCTTTGTGGCTTCTTTCACCACA taaccagggtgtggacacacttacaaaccttgggtttctctcctttttagGTGAGAGGCAGCCTGGGAGCAAACATTGTCAGTAGCATTGCTGCAGGGACGGGGATTGCCATGCTGATCCTCAATCTGACCAATAACTTCGCTTATATGAACAACTGCAAGAATGTTACCGAAGACGACGGTCTGTTTTGTGGCTTCTTTCACGACAgtgaggatttctggggaaaatccaaactctctgtgacctgtggtacccta Alignment from Spaln_aa2Genome GTGAGAGGCAGCCTGGGAGCAAACATTGTCAGTAGCATCGCTGCAGGGACGGGGATCGCCATGCTGATCCTCAATCTGACCAATAACTTCGCTTATATGAACAACTGCAAGAATGTAACCGAAGACGACGGC-TGCTTTGTGGCTTCTTTCACCACA taaccagggtgtggacacacttacaaaccttgggtttctctcctttttagGTGAGAGGCAGCCTGGGAGCAAACATTGTCAGTAGCATTGCTGCAGGGACGGGGATTGCCATGCTGATCCTCAATCTGACCAATAACTTCGCTTATATGAACAACTGCAAGAATGTTACCGAAGACGACGGTcTGTTTTGTGGCTTCTTTCACGACAgtgaggatttctggggaaaatccaaactctctgtgacctgtggtacccta Alignment from Spaln_nt2Genome GTGAGAGGCAGCCTGGGAGCAAACATTGTCAGTAGCATCGCTGCAGGGACGGGGATCGCCATGCTGATCCTCAATCTGACCAATAACTTCGCTTATATGAACAACTGCAAGAATGTAACCGAAGACGACGG-CTGCTTTGTGGCTTCTTTCACCACA taaccagggtgtggacacacttacaaaccttgggtttctctcctttttagGTGAGAGGCAGCCTGGGAGCAAACATTGTCAGTAGCATTGCTGCAGGGACGGGGATTGCCATGCTGATCCTCAATCTGACCAATAACTTCGCTTATATGAACAACTGCAAGAATGTTACCGAAGACGACGGTCTGTTTTGTGGCTTCTTTCACGACAgtgaggatttctggggaaaatccaaactctctgtgacctgtggtacccta Alignment from Pairagon GTGAGAGGCAGCCTGGGAGCAAACATTGTCAGTAGCATCGCTGCAGGGACGGGGATCGCCATGCTGATCCTCAATCTGACCAATAACTTCGCTTATATGAACAACTGCAAGAATGTAACCGAAGACGACGG-CTGCTTTGTGGCTTCTTTCACCACA taaccagggtgtggacacacttacaaaccttgggtttctctcctttttagGTGAGAGGCAGCCTGGGAGCAAACATTGTCAGTAGCATTGCTGCAGGGACGGGGATTGCCATGCTGATCCTCAATCTGACCAATAACTTCGCTTATATGAACAACTGCAAGAATGTTACCGAAGACGACGGTCTGTTTTGTGGCTTCTTTCACGACAgtgaggatttctggggaaaatccaaactctctgtgacctgtggtacccta Alignment from Exonerate_protein2genome GTGAGAGGCAGCCTGGGAGCAAACATTGTCAGTAGCATCGCTGCAGGGACGGGGATCGCCATGCTGATCCTCAATCTGACCAATAACTTCGCTTATATGAACAACTGCAAGAATGTAACCGAAGACGACGGC-TGCTTTGTGGCTTCTTTCACCACA taaccagggtgtggacacacttacaaaccttgggtttctctcctttttagGTGAGAGGCAGCCTGGGAGCAAACATTGTCAGTAGCATTGCTGCAGGGACGGGGATTGCCATGCTGATCCTCAATCTGACCAATAACTTCGCTTATATGAACAACTGCAAGAATGTTACCGAAGACGACGGTCTGTTTTGTGGCTTCTTTCACGACAgtgaggatttctggggaaaatccaaactctctgtgacctgtggtacccta Alignment from Exonerate_coding2genome GTGAGAGGCAGCCTGGGAGCAAACATTGTCAGTAGCATCGCTGCAGGGACGGGGATCGCCATGCTGATCCTCAATCTGACCAATAACTTCGCTTATATGAACAACTGCAAGAATGTAACCGAAGACGACGGC-TGCTTTGTGGCTTCTTTCACCACA taaccagggtgtggacacacttacaaaccttgggtttctctcctttttagGTGAGAGGCAGCCTGGGAGCAAACATTGTCAGTAGCATTGCTGCAGGGACGGGGATTGCCATGCTGATCCTCAATCTGACCAATAACTTCGCTTATATGAACAACTGCAAGAATGTTACCGAAGACGACGGTCTGTTTTGTGGCTTCTTTCACGACAgtgaggatttctggggaaaatccaaactctctgtgacctgtggtacccta Alignment from GeneWise GTGAGAGGCAGCCTGGGAGCAAACATTGTCAGTAGCATCGCTGCAGGGACGGGGATCGCCATGCTGATCCTCAATCTGACCAATAACTTCGCTTATATGAACAACTGCAAGAATGTAACCGAAGACGAC-GGCTGCTTTGTGGCTTCTTTCACCACA taaccagggtgtggacacacttacaaaccttgggtttctctcctttttagGTGAGAGGCAGCCTGGGAGCAAACATTGTCAGTAGCATTGCTGCAGGGACGGGGATTGCCATGCTGATCCTCAATCTGACCAATAACTTCGCTTATATGAACAACTGCAAGAATGTTACCGAAGACGACGGTCTGTTTTGTGGCTTCTTTCACGACAgtgaggatttctggggaaaatccaaactctctgtgacctgtggtacccta #### Mta2_ID2534_7 --> 2 - 2 Original Alignment gaGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGG-CAGATTGATCAGTTTCTCGTGGTGGCCcg tctgacttatttccctttctcccacccgttcatcattaccatcttgacaggaGAATCAGATAATCGAAATCAACAGAAAATGGAGATGAAAGTCTGGGACCCAGGCAACCCCCTCACAGACCGACCAGATTGACCAATTTCTTGTGGTGGCTcggtttgtgagatgttcaggtaggtggcctagggtgcattggattgaaattt Alignment from CESAR gaGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGG-CAGATTGATCAGTTTCTCGTGGTGGCCcg tctgacttatttccctttctcccacccgttcatcattaccatcttgacaggaGAATCAGATAATCGAAATCAACAGAAAATGGAGATGAAAGTCTGGGACCCAGGCAACCCCCTCACAGACCGACCAGATTGACCAATTTCTTGTGGTGGCTcggtttgtgagatgttcaggtaggtggcctagggtgcattggattgaaattt Alignment from Spaln_aa2Genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGG-CAGATTGATCAGTTTCTCGTGGTGGCCCG tctgacttatttccctttctcccacccgttcatcattaccatcttgacagGAGAATCAGATAATCGAAATCAACAGAAAATGGAGATGAAAGTCTGGGACCCAGGCAACCCCCTCACAGACCGAcCAGATTGACCAATTTCTTGTGGTGGCTCGgtttgtgagatgttcaggtaggtggcctagggtgcattggattgaaattt Alignment from Spaln_nt2Genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGC-AGATTGATCAGTTTCTCGTGGTGGCCCG tctgacttatttccctttctcccacccgttcatcattaccatcttgacagGAGAATCAGATAATCGAAATCAACAGAAAATGGAGATGAAAGTCTGGGACCCAGGCAACCCCCTCACAGACCGACCAGATTGACCAATTTCTTGTGGTGGCTCGgtttgtgagatgttcaggtaggtggcctagggtgcattggattgaaattt Alignment from Pairagon GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGG-CAGATTGATCAGTTTCTCGTGGTGGCCCG tctgacttatttccctttctcccacccgttcatcattaccatcttgacagGAGAATCAGATAATCGAAATCAACAGAAAATGGAGATGAAAGTCTGGGACCCAGGCAACCCCCTCACAGACCGACCAGATTGACCAATTTCTTGTGGTGGCTCGgtttgtgagatgttcaggtaggtggcctagggtgcattggattgaaattt Alignment from Exonerate_protein2genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGG-CAGATTGATCAGTTTCTCGTGGTGGCCCG tctgacttatttccctttctcccacccgttcatcattaccatcttgacagGAGAATCAGATAATCGAAATCAACAGAAAATGGAGATGAAAGTCTGGGACCCAGGCAACCCCCTCACAGACCGACCAGATTGACCAATTTCTTGTGGTGGCTCGgtttgtgagatgttcaggtaggtggcctagggtgcattggattgaaattt Alignment from Exonerate_coding2genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGG-CAGATTGATCAGTTTCTCGTGGTGGCCCG tctgacttatttccctttctcccacccgttcatcattaccatcttgacagGAGAATCAGATAATCGAAATCAACAGAAAATGGAGATGAAAGTCTGGGACCCAGGCAACCCCCTCACAGACCGACCAGATTGACCAATTTCTTGTGGTGGCTCGgtttgtgagatgttcaggtaggtggcctagggtgcattggattgaaattt Alignment from GeneWise GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGG-CAGATTGATCAGTTTCTCGTGGTGGCCCG tctgacttatttccctttctcccacccgttcatcattaccatcttgacagGAGAATCAGATAATCGAAATCAACAGAAAATGGAGATGAAAGTCTGGGACCCAGGCAACCCCCTCACAGACCGACCAGATTGACCAATTTCTTGTGGTGGCTCGgtttgtgagatgttcaggtaggtggcctagggtgcattggattgaaattt #### Mta2_ID2536_9 --> 0 - 0 Original Alignment TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGT-CGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggatttagagagtagcaagcccttagtatgtgtttgcttggtctccagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTCCGAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGGAAAGATTTCAATGATATCCGCCAGGACTTTgtaagagatcaagaccaagaggggagagaacgatgaggggactgagaaca Alignment from CESAR TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGT-CGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggatttagagagtagcaagcccttagtatgtgtttgcttggtctccagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTCCGAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGGAAAGATTTCAATGATATCCGCCAGGACTTTgtaagagatcaagaccaagaggggagagaacgatgaggggactgagaaca Alignment from Spaln_aa2Genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGT-CGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggatttagagagtagcaagcccttagtatgtgtttgcttggtctccagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTcCGAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGGAAAGATTTCAATGATATCCGCCAGGACTTTgtaagagatcaagaccaagaggggagagaacgatgaggggactgagaaca Alignment from Spaln_nt2Genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGT-CGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggatttagagagtagcaagcccttagtatgtgtttgcttggtctccagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTCCGAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGGAAAGATTTCAATGATATCCGCCAGGACTTTgtaagagatcaagaccaagaggggagagaacgatgaggggactgagaaca Alignment from Pairagon TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGT-CGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggatttagagagtagcaagcccttagtatgtgtttgcttggtctccagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTCCGAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGGAAAGATTTCAATGATATCCGCCAGGACTTTgtaagagatcaagaccaagaggggagagaacgatgaggggactgagaaca Alignment from Exonerate_protein2genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGT-CGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggatttagagagtagcaagcccttagtatgtgtttgcttggtctccagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTCCGAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGGAAAGATTTCAATGATATCCGCCAGGACTTTgtaagagatcaagaccaagaggggagagaacgatgaggggactgagaaca Alignment from Exonerate_coding2genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGT-CGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggatttagagagtagcaagcccttagtatgtgtttgcttggtctccagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTCCGAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGGAAAGATTTCAATGATATCCGCCAGGACTTTgtaagagatcaagaccaagaggggagagaacgatgaggggactgagaaca Alignment from GeneWise TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGT-CGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT agggatttagagagtagcaagcccttagtatgtgtttgcttggtctccagTTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCGGTGCTCTGTCCGAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGGAAAGATTTCAATGATATCCGCCAGGACTTTgtaagagatcaagaccaagaggggagagaacgatgaggggactgagaaca #### Mta2_ID2539_12 --> 1 - 1 Original Alignment tACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTC-CAGAAGGGCCTGACTTGTGAGAGCTGCCACa ggttatttcccttactgccatctttctcaacatgaattctgtttctgcagtACTAAGCCAAATCCTAACCAGATCATCTCTGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCCCAGAAGGGCCTGACTTGTGAGAGCTGTCACagtgagttggaagtgggaacatggttggttagcatggtcccagttggctta Alignment from CESAR tACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTC-CAGAAGGGCCTGACTTGTGAGAGCTGCCACa ggttatttcccttactgccatctttctcaacatgaattctgtttctgcagtACTAAGCCAAATCCTAACCAGATCATCTCTGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCCCAGAAGGGCCTGACTTGTGAGAGCTGTCACagtgagttggaagtgggaacatggttggttagcatggtcccagttggctta Alignment from Spaln_aa2Genome TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTC-CAGAAGGGCCTGACTTGTGAGAGCTGCCACA ggttatttcccttactgccatctttctcaacatgaattctgtttctgcagTACTAAGCCAAATCCTAACCAGATCATCTCTGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCcCAGAAGGGCCTGACTTGTGAGAGCTGTCACAgtgagttggaagtgggaacatggttggttagcatggtcccagttggctta Alignment from Spaln_nt2Genome TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATT-CCAGAAGGGCCTGACTTGTGAGAGCTGCCACA ggttatttcccttactgccatctttctcaacatgaattctgtttctgcagTACTAAGCCAAATCCTAACCAGATCATCTCTGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCCCAGAAGGGCCTGACTTGTGAGAGCTGTCACAgtgagttggaagtgggaacatggttggttagcatggtcccagttggctta Alignment from Pairagon TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATT-CCAGAAGGGCCTGACTTGTGAGAGCTGCCACA ggttatttcccttactgccatctttctcaacatgaattctgtttctgcagTACTAAGCCAAATCCTAACCAGATCATCTCTGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCCCAGAAGGGCCTGACTTGTGAGAGCTGTCACAgtgagttggaagtgggaacatggttggttagcatggtcccagttggctta Alignment from Exonerate_protein2genome TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTC-CAGAAGGGCCTGACTTGTGAGAGCTGCCACA ggttatttcccttactgccatctttctcaacatgaattctgtttctgcagTACTAAGCCAAATCCTAACCAGATCATCTCTGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCCCAGAAGGGCCTGACTTGTGAGAGCTGTCACAgtgagttggaagtgggaacatggttggttagcatggtcccagttggctta Alignment from Exonerate_coding2genome TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTC-CAGAAGGGCCTGACTTGTGAGAGCTGCCACA ggttatttcccttactgccatctttctcaacatgaattctgtttctgcagTACTAAGCCAAATCCTAACCAGATCATCTCTGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCCCAGAAGGGCCTGACTTGTGAGAGCTGTCACAgtgagttggaagtgggaacatggttggttagcatggtcccagttggctta Alignment from GeneWise TACCAAGCCAAACCCTAACCAGATCATTTCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTC-CAGAAGGGCCTGACTTGTGAGAGCTGCCACA ggttatttcccttactgccatctttctcaacatgaattctgtttctgcagTACTAAGCCAAATCCTAACCAGATCATCTCTGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCCCAGAAGGGCCTGACTTGTGAGAGCTGTCACAgtgagttggaagtgggaacatggttggttagcatggtcccagttggctta #### Mta2_ID2540_13 --> 2 - 0 Original Alignment ccACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCT-ACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tgtagcatcattcctgccagcataattctactttgttgtttttaactcagccACACAGTCTGCACAGTGGTATGCCTGGGGACCGCCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGGTTTATTGGAAAAAATATGGGGGCTTGAAGACCCCTCACCCAACTAGAAGGAGCAGCTCGGAGCACCACAgtctgtgtgagtgggttggaaaccagcatgggaactaagccaggggggga Alignment from CESAR ccACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCT-ACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tgtagcatcattcctgccagcataattctactttgttgtttttaactcagccACACAGTCTGCACAGTGGTATGCCTGGGGACCGCCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGGTTTATTGGAAAAAATATGGGGGCTTGAAGACCCCTCACCCAACTAGAAGGAGCAGCTCGGAGCACCACAgtctgtgtgagtgggttggaaaccagcatgggaactaagccaggggggga Alignment from Spaln_aa2Genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCT-ACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tgtagcatcattcctgccagcataattctactttgttgtttttaactcagCCACACAGTCTGCACAGTGGTATGCCTGGGGACCGCCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGGTTTATTGGAAAAAATATGGGGGCTTGAAGACCCCTcACCCAACTAGAAGGAGCAGCTCGGAGCACCACAgtctgtgtgagtgggttggaaaccagcatgggaactaagccaggggggga Alignment from Spaln_nt2Genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCT-ACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tgtagcatcattcctgccagcataattctactttgttgtttttaactcagCCACACAGTCTGCACAGTGGTATGCCTGGGGACCGCCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGGTTTATTGGAAAAAATATGGGGGCTTGAAGACCCCTCACCCAACTAGAAGGAGCAGCTCGGAGCACCACAgtctgtgtgagtgggttggaaaccagcatgggaactaagccaggggggga Alignment from Pairagon CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCT-ACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tgtagcatcattcctgccagcataattctactttgttgtttttaactcagCCACACAGTCTGCACAGTGGTATGCCTGGGGACCGCCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGGTTTATTGGAAAAAATATGGGGGCTTGAAGACCCCTCACCCAACTAGAAGGAGCAGCTCGGAGCACCACAgtctgtgtgagtgggttggaaaccagcatgggaactaagccaggggggga Alignment from Exonerate_protein2genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCT-ACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tgtagcatcattcctgccagcataattctactttgttgtttttaactcagCCACACAGTCTGCACAGTGGTATGCCTGGGGACCGCCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGGTTTATTGGAAAAAATATGGGGGCTTGAAGACCCCTCACCCAACTAGAAGGAGCAGCTCGGAGCACCACAgtctgtgtgagtgggttggaaaccagcatgggaactaagccaggggggga Alignment from Exonerate_coding2genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCT-ACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tgtagcatcattcctgccagcataattctactttgttgtttttaactcagCCACACAGTCTGCACAGTGGTATGCCTGGGGACCGCCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGGTTTATTGGAAAAAATATGGGGGCTTGAAGACCCCTCACCCAACTAGAAGGAGCAGCTCGGAGCACCACAgtctgtgtgagtgggttggaaaccagcatgggaactaagccaggggggga Alignment from GeneWise CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCT-ACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tgtagcatcattcctgccagcataattctactttgttgtttttaactcagCCACACAGTCTGCACAGTGGTATGCCTGGGGACCGCCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGGTTTATTGGAAAAAATATGGGGGCTTGAAGACCCCTCACCCAACTAGAAGGAGCAGCTCGGAGCACCACAgtctgtgtgagtgggttggaaaccagcatgggaactaagccaggggggga #### Mta2_ID2543_16 --> 2 - 0 Original Alignment tgGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAAT-CGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcaggctaggttggatcttctatctcaaagtagatattctttttttagtgGCTCAGGCACTTCTGAAGCCAAAAACACCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACTgtatgttggcagagcagaataaaagctgagcagggtaggttattgttttt Alignment from CESAR tgGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAAT-CGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcaggctaggttggatcttctatctcaaagtagatattctttttttagtgGCTCAGGCACTTCTGAAGCCAAAAACACCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACTgtatgttggcagagcagaataaaagctgagcagggtaggttattgttttt Alignment from Spaln_aa2Genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAAT-CGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcaggctaggttggatcttctatctcaaagtagatattctttttttagTGGCTCAGGCACTTCTGAAGCCAAAAACACCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATcCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACTgtatgttggcagagcagaataaaagctgagcagggtaggttattgttttt Alignment from Spaln_nt2Genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAAT-CGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcaggctaggttggatcttctatctcaaagtagatattctttttttagTGGCTCAGGCACTTCTGAAGCCAAAAACACCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACTgtatgttggcagagcagaataaaagctgagcagggtaggttattgttttt Alignment from Pairagon TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAAT-CGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcaggctaggttggatcttctatctcaaagtagatattctttttttagTGGCTCAGGCACTTCTGAAGCCAAAAACACCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACTgtatgttggcagagcagaataaaagctgagcagggtaggttattgttttt Alignment from Exonerate_protein2genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAAT-CGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcaggctaggttggatcttctatctcaaagtagatattctttttttagTGGCTCAGGCACTTCTGAAGCCAAAAACACCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACTgtatgttggcagagcagaataaaagctgagcagggtaggttattgttttt Alignment from Exonerate_coding2genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAAT-CGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcaggctaggttggatcttctatctcaaagtagatattctttttttagTGGCTCAGGCACTTCTGAAGCCAAAAACACCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACTgtatgttggcagagcagaataaaagctgagcagggtaggttattgttttt Alignment from GeneWise TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAAT-CGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACT tttcaggctaggttggatcttctatctcaaagtagatattctttttttagTGGCTCAGGCACTTCTGAAGCCAAAAACACCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCCGAGGCCTGGGGGGCATTATGGTGAAACGTTCCTATGAGACTgtatgttggcagagcagaataaaagctgagcagggtaggttattgttttt #### Myof_ID7469_33 --> 0 - 0 Original Alignment GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCC-TTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataatggtatctgctggggcaatggatgctgtctcctgtttgtctcacagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCTCCCCCTGGTGAAACTGAACTCACAAACAGACATCACACCCAAGCCTCTCTGGCATCCTGTTATGAACGGGGACAAGGCTTGTGCAGATGTCCTCGTTACGGCAGAGTTGATTTTGAGGAACAAGgtgagctatgttcatactcatacattccacaaacttcttagagcacctaa Alignment from CESAR GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCTCCC-TTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataatggtatctgctggggcaatggatgctgtctcctgtttgtctcacagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCTCCCCCTGGTGAAACTGAACTCACAAACAGACATCACACCCAAGCCTCTCTGGCATCCTGTTATGAACGGGGACAAGGCTTGTGCAGATGTCCTCGTTACGGCAGAGTTGATTTTGAGGAACAAGgtgagctatgttcatactcatacattccacaaacttcttagagcacctaa Alignment from Spaln_aa2Genome GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCT-CCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataatggtatctgctggggcaatggatgctgtctcctgtttgtctcacagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCTcCCCCTGGTGAAACTGAACTCACAAACAGACATCACACCCAAGCCTCTCTGGCATCCTGTTATGAACGGGGACAAGGCTTGTGCAGATGTCCTCGTTACGGCAGAGTTGATTTTGAGGAACAAGgtgagctatgttcatactcatacattccacaaacttcttagagcacctaa Alignment from Spaln_nt2Genome GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCT-CCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataatggtatctgctggggcaatggatgctgtctcctgtttgtctcacagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCTCCCCCTGGTGAAACTGAACTCACAAACAGACATCACACCCAAGCCTCTCTGGCATCCTGTTATGAACGGGGACAAGGCTTGTGCAGATGTCCTCGTTACGGCAGAGTTGATTTTGAGGAACAAGgtgagctatgttcatactcatacattccacaaacttcttagagcacctaa Alignment from Pairagon GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCT-CCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataatggtatctgctggggcaatggatgctgtctcctgtttgtctcacagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCTCCCCCTGGTGAAACTGAACTCACAAACAGACATCACACCCAAGCCTCTCTGGCATCCTGTTATGAACGGGGACAAGGCTTGTGCAGATGTCCTCGTTACGGCAGAGTTGATTTTGAGGAACAAGgtgagctatgttcatactcatacattccacaaacttcttagagcacctaa Alignment from Exonerate_protein2genome GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCT-CCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataatggtatctgctggggcaatggatgctgtctcctgtttgtctcacagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCTCCCCCTGGTGAAACTGAACTCACAAACAGACATCACACCCAAGCCTCTCTGGCATCCTGTTATGAACGGGGACAAGGCTTGTGCAGATGTCCTCGTTACGGCAGAGTTGATTTTGAGGAACAAGgtgagctatgttcatactcatacattccacaaacttcttagagcacctaa Alignment from Exonerate_coding2genome GGCAAAGATGAATTTTTAGGTCGAAGCATTTGCTCT-CCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataatggtatctgctggggcaatggatgctgtctcctgtttgtctcacagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCTCCCCCTGGTGAAACTGAACTCACAAACAGACATCACACCCAAGCCTCTCTGGCATCCTGTTATGAACGGGGACAAGGCTTGTGCAGATGTCCTCGTTACGGCAGAGTTGATTTTGAGGAACAAGgtgagctatgttcatactcatacattccacaaacttcttagagcacctaa Alignment from GeneWise GGCAAAGATGAATTTTTAGGTCGAAGCATTTGC-TCTCCCTTGGTGAAACTGAACTCAGAAACGGACATCACACCTAAGCTTCTCTGGCATCCTGTTATGAATGGAGACAAGGCCTGTGGGGATGTCCTCGTAACAGCAGAGTTGATTCTGAGGAACAAG ataatggtatctgctggggcaatggatgctgtctcctgtttgtctcacagGGTAAAGATGAATTTTTAGGTCAGAGCATTTGCTCTCCCCCTGGTGAAACTGAACTCACAAACAGACATCACACCCAAGCCTCTCTGGCATCCTGTTATGAACGGGGACAAGGCTTGTGCAGATGTCCTCGTTACGGCAGAGTTGATTTTGAGGAACAAGgtgagctatgttcatactcatacattccacaaacttcttagagcacctaa #### Myof_ID7493_9 --> 0 - 0 Original Alignment GTTTATAATTCCCATTCTTTGAGGGCAGATTGT-CTGATGGGGGAATTTAAG tgagtgtccagaagcaaagaattttcactcccccatttttcttaatttagGTTTATAATTCCCATTCTTTGAGAGCAGATTGTCTTTATGGGAGAATTTAAGgtgagtgacaccaccattatgttcaatgagataaggatgagagccactta Alignment from CESAR GTTTATAATTCCCATTCTTTGAGGGCAGATTGTCTG-ATGGGGGAATTTAAG taagagtccagaagcaaagaattttcactcccccatttttcttaatttagGTTTATAATTCCCATTCTTTGAGAGCAGATTGTCTTTATGGGAGAATTTAAGgtgagtgacaccaccattatgttcaatgagataaggatgagagccactta Alignment from Spaln_aa2Genome GTTTATAATTCCCATTCTTTGAGGGCAGATTGTCTG-ATGGGGGAATTTAAG tgagtgtccagaagcaaagaattttcactcccccatttttcttaatttagGTTTATAATTCCCATTCTTTGAGAGCAGATTGTCTTtATGGGAGAATTTAAGgtgagtgacaccaccattatgttcaatgagataaggatgagagccactta Alignment from Spaln_nt2Genome GTTTATAATTCCCATTCTTTGAGGGCAGATTGTCTG-ATGGGGGAATTTAAG tgagtgtccagaagcaaagaattttcactcccccatttttcttaatttagGTTTATAATTCCCATTCTTTGAGAGCAGATTGTCTTTATGGGAGAATTTAAGgtgagtgacaccaccattatgttcaatgagataaggatgagagccactta Alignment from Pairagon GTTTATAATTCCCATTCTTTGAGGGCAGATTGTC-TGATGGGGGAATTTAAG tgagtgtccagaagcaaagaattttcactcccccatttttcttaatttagGTTTATAATTCCCATTCTTTGAGAGCAGATTGTCTTTATGGGAGAATTTAAGgtgagtgacaccaccattatgttcaatgagataaggatgagagccactta Alignment from Exonerate_protein2genome GTTTATAATTCCCATTCTTTGAGGGCAGATTGTCTG-ATGGGGGAATTTAAG tgagtgtccagaagcaaagaattttcactcccccatttttcttaatttagGTTTATAATTCCCATTCTTTGAGAGCAGATTGTCTTTATGGGAGAATTTAAGgtgagtgacaccaccattatgttcaatgagataaggatgagagccactta Alignment from Exonerate_coding2genome GTTTATAATTCCCATTCTTTGAGGGCAGATTGTCTG-ATGGGGGAATTTAAG tgagtgtccagaagcaaagaattttcactcccccatttttcttaatttagGTTTATAATTCCCATTCTTTGAGAGCAGATTGTCTTTATGGGAGAATTTAAGgtgagtgacaccaccattatgttcaatgagataaggatgagagccactta Alignment from GeneWise ATTCC --AGTgtccagaagcaaagaattttcactcccccatttttcttaatttaggtttataattcccattctttgagagcagattgtctttatgggagaatttaaggtgagtgacaccaccattatgttcaatgagataaggatgagagccactta #### Myrf_ID2714_23 --> 1 - 2 Original Alignment gCTTGGCAACTTCACCTAC-CACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGaa gaagaaactggcaaagtggcctttattactttccttttcttctcccatagaCTTGGCAACTTTACATACCCATATCCCAGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTACAGATGaagtgagcgctggtgcatgaccagacatgtgagtacaaagtgatgatatggg Alignment from CESAR gCTTGGCAACTTCACCTAC-CACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGaa gaagaaactggcaaagtggcctttattactttccttttcttctcccatagaCTTGGCAACTTTACATACCCATATCCCAGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTACAGATGaagtgagcgctggtgcatgaccagacatgtgagtacaaagtgatgatatggg Alignment from Spaln_aa2Genome GCTTGGCAACTTCACCTAC-CACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA gaagaaactggcaaagtggcctttattactttccttttcttctcccatagACTTGGCAACTTTACATACcCATATCCCAGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTACAGATGAAgtgagcgctggtgcatgaccagacatgtgagtacaaagtgatgatatggg Alignment from Spaln_nt2Genome GCTTGGCAACTTCACCTACC-ACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA gaagaaactggcaaagtggcctttattactttccttttcttctcccatagACTTGGCAACTTTACATACCCATATCCCAGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTACAGATGAAgtgagcgctggtgcatgaccagacatgtgagtacaaagtgatgatatggg Alignment from Pairagon GCTTGGCAACTTCACCTA-CCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA gaagaaactggcaaagtggcctttattactttccttttcttctcccatagACTTGGCAACTTTACATACCCATATCCCAGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTACAGATGAAgtgagcgctggtgcatgaccagacatgtgagtacaaagtgatgatatggg Alignment from Exonerate_protein2genome GCTTGGCAACTTCACCTAC-CACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA gaagaaactggcaaagtggcctttattactttccttttcttctcccatagACTTGGCAACTTTACATACCCATATCCCAGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTACAGATGAAgtgagcgctggtgcatgaccagacatgtgagtacaaagtgatgatatggg Alignment from Exonerate_coding2genome GCTTGGCAACTTCACCTAC-CACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA gaagaaactggcaaagtggcctttattactttccttttcttctcccatagACTTGGCAACTTTACATACCCATATCCCAGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTACAGATGAAgtgagcgctggtgcatgaccagacatgtgagtacaaagtgatgatatggg Alignment from GeneWise GCTTGGCAACTTCACC-TACCACATCCCTGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTGCAGATGAA gaagaaactggcaaagtggcctttattactttccttttcttctcccatagACTTGGCAACTTTACATACCCATATCCCAGTCAGCAGCAGCACACCACTGCACCTCAGCCTGACCCTACAGATGAAgtgagcgctggtgcatgaccagacatgtgagtacaaagtgatgatatggg #### Myrf_ID2718_19 --> 1 - 1 Original Alignment cAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCGACAGTCCTCCATGACCACCGGACTA-CCAGGCACACAGCCCTCTTTGCTGCTGg ccggctccaaagcttccctgtacctctatatctatgcatttattttacagtAGGTCCAGTCAGAGCTTTGGGACCACACAGCTCCAACAGTCCTCCATGACCACTGGACTACCCAGGAACACAGCCCTCTTTGCTGCTGggtgagtgtctggtgggatccgatgaggccgatggatgtgtgtgcagcccc Alignment from CESAR cAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCGACAGTCCTCCATGACCACCGGACTA-CCAGGCACACAGCCCTCTTTGCTGCTGg ccggctccaaagcttccctgtacctctatatctatgcatttattttacagtAGGTCCAGTCAGAGCTTTGGGACCACACAGCTCCAACAGTCCTCCATGACCACTGGACTACCCAGGAACACAGCCCTCTTTGCTGCTGggtgagtgtctggtgggatccgatgaggccgatggatgtgtgtgcagcccc Alignment from Spaln_aa2Genome CAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCGACAGTCCTCCATGACCACCGGACTACCA-GGCACACAGCCCTCTTTGCTGCTGG ccggctccaaagcttccctgtacctctatatctatgcatttattttacagTAGGTCCAGTCAGAGCTTTGGGACCACACAGCTCCAACAGTCCTCCATGACCACTGGACTACCCaGGAACACAGCCCTCTTTGCTGCTGGgtgagtgtctggtgggatccgatgaggccgatggatgtgtgtgcagcccc Alignment from Spaln_nt2Genome CAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCGACAGTCCTCCATGACCACCGGACTAC-CAGGCACACAGCCCTCTTTGCTGCTGG ccggctccaaagcttccctgtacctctatatctatgcatttattttacagTAGGTCCAGTCAGAGCTTTGGGACCACACAGCTCCAACAGTCCTCCATGACCACTGGACTACCCAGGAACACAGCCCTCTTTGCTGCTGGgtgagtgtctggtgggatccgatgaggccgatggatgtgtgtgcagcccc Alignment from Pairagon CAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCGACAGTCCTCCATGACCACCGGACTA-CCAGGCACACAGCCCTCTTTGCTGCTGG ccggctccaaagcttccctgtacctctatatctatgcatttattttacagTAGGTCCAGTCAGAGCTTTGGGACCACACAGCTCCAACAGTCCTCCATGACCACTGGACTACCCAGGAACACAGCCCTCTTTGCTGCTGGgtgagtgtctggtgggatccgatgaggccgatggatgtgtgtgcagcccc Alignment from Exonerate_protein2genome CAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCGACAGTCCTCCATGACCACCGGACTA-CCAGGCACACAGCCCTCTTTGCTGCTGG ccggctccaaagcttccctgtacctctatatctatgcatttattttacagTAGGTCCAGTCAGAGCTTTGGGACCACACAGCTCCAACAGTCCTCCATGACCACTGGACTACCCAGGAACACAGCCCTCTTTGCTGCTGGgtgagtgtctggtgggatccgatgaggccgatggatgtgtgtgcagcccc Alignment from Exonerate_coding2genome CAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCGACAGTCCTCCATGACCACCGGACTA-CCAGGCACACAGCCCTCTTTGCTGCTGG ccggctccaaagcttccctgtacctctatatctatgcatttattttacagTAGGTCCAGTCAGAGCTTTGGGACCACACAGCTCCAACAGTCCTCCATGACCACTGGACTACCCAGGAACACAGCCCTCTTTGCTGCTGGgtgagtgtctggtgggatccgatgaggccgatggatgtgtgtgcagcccc Alignment from GeneWise CAGGTCCAGCCAGAGCTTCGGGACCACACAGCTCCGACAGTCCTCCATGACCACCGGA-CTACCAGGCACACAGCCCTCTTTGCTGCTG--------------------------------------------------- ccggctccaaagcttccctgtacctctatatctatgcatttattttacagTAGGTCCAGTCAGAGCTTTGGGACCACACAGCTCCAACAGTCCTCCATGACCACTGGACTACCCAGGAACACAGCCCTCTTTGCTGCTGGGTGAGTGTCTGGTGGGATCCGATGAGGCCGATGGATGTGTGTGCAGCCCC #### Myrf_ID2720_17 --> 0 - 2 Original Alignment TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGT-TTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCag cctaactctactatctagtgctgtgtttccccgactctgactcccggcagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTCTTTCTGCAGGGAACTATCATTGCTCTCGTGGTGGTCATGGCCTTCaggtaagtccctccactggggaggcttctttaaaaagcagggccacacagtg Alignment from CESAR TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGT-TTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCag cctaactctactatctagtgctgtgtttccccgactctgactcccggcagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTCTTTCTGCAGGGAACTATCATTGCTCTCGTGGTGGTCATGGCCTTCaggtaagtccctccactggggaggcttctttaaaaagcagggccacacagtg Alignment from Spaln_aa2Genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGT-TTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactctactatctagtgctgtgtttccccgactctgactcccggcagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTcTTTCTGCAGGGAACTATCATTGCTCTCGTGGTGGTCATGGCCTTCAGgtaagtccctccactggggaggcttctttaaaaagcagggccacacagtg Alignment from Spaln_nt2Genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGT-TTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactctactatctagtgctgtgtttccccgactctgactcccggcagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTCTTTCTGCAGGGAACTATCATTGCTCTCGTGGTGGTCATGGCCTTCAGgtaagtccctccactggggaggcttctttaaaaagcagggccacacagtg Alignment from Pairagon TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGT-TTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactctactatctagtgctgtgtttccccgactctgactcccggcagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTCTTTCTGCAGGGAACTATCATTGCTCTCGTGGTGGTCATGGCCTTCAGgtaagtccctccactggggaggcttctttaaaaagcagggccacacagtg Alignment from Exonerate_protein2genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGT-TTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactctactatctagtgctgtgtttccccgactctgactcccggcagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTCTTTCTGCAGGGAACTATCATTGCTCTCGTGGTGGTCATGGCCTTCAGgtaagtccctccactggggaggcttctttaaaaagcagggccacacagtg Alignment from Exonerate_coding2genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGT-TTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactctactatctagtgctgtgtttccccgactctgactcccggcagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTCTTTCTGCAGGGAACTATCATTGCTCTCGTGGTGGTCATGGCCTTCAGgtaagtccctccactggggaggcttctttaaaaagcagggccacacagtg Alignment from GeneWise TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAG-CGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctaactctactatctagtgctgtgtttccccgactctgactcccggcagTCATCGTCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTCTTTCTGCAGGGAACTATCATTGCTCTCGTGGTGGTCATGGCCTTCAGgtaagtccctccactggggaggcttctttaaaaagcagggccacacagtg #### Myrf_ID2722_15 --> 0 - 2 Original Alignment GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGAC-AACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCag gagtaatcaatggtaccctcaaccctcatattctttcctgttcttgccagGAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACCAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCaggtgggtgtgccaggcaggtgggtgggggtgggggagataggatgaaggag Alignment from CESAR GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGAC-AACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCag gagtaatcaatggtaccctcaaccctcatattctttcctgttcttgccagGAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACCAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCaggtgggtgtgccaggcaggtgggtgggggtgggggagataggatgaaggag Alignment from Spaln_aa2Genome GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGAC-AACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG gagtaatcaatggtaccctcaaccctcatattctttcctgttcttgccagGAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACcAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtgggtgtgccaggcaggtgggtgggggtgggggagataggatgaaggag Alignment from Spaln_nt2Genome GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGA-CAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG gagtaatcaatggtaccctcaaccctcatattctttcctgttcttgccagGAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACCAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtgggtgtgccaggcaggtgggtgggggtgggggagataggatgaaggag Alignment from Pairagon GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGA-CAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG gagtaatcaatggtaccctcaaccctcatattctttcctgttcttgccagGAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACCAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtgggtgtgccaggcaggtgggtgggggtgggggagataggatgaaggag Alignment from Exonerate_protein2genome GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGAC-AACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG gagtaatcaatggtaccctcaaccctcatattctttcctgttcttgccagGAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACCAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtgggtgtgccaggcaggtgggtgggggtgggggagataggatgaaggag Alignment from Exonerate_coding2genome GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGAC-AACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG gagtaatcaatggtaccctcaaccctcatattctttcctgttcttgccagGAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACCAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtgggtgtgccaggcaggtgggtgggggtgggggagataggatgaaggag Alignment from GeneWise GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGAC-AACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAG gagtaatcaatggtaccctcaaccctcatattctttcctgttcttgccagGAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACCAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTGGCAGCTCAGGGGCTTTCAGgtgggtgtgccaggcaggtgggtgggggtgggggagataggatgaaggag #### Myrf_ID2723_14 --> 2 - 0 Original Alignment gtGTCATCGCCCAGGAAGTG-AAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagattcctgggtccaagaccacacattttctttctctttttgcacaggtGTCATTGCCCAGGAGGTGCAAGGAGATCTTGCCTGAAGCTGTGGAGGACACAGGGGATGTGGTCTTTGCAAATGGAAAAACCATAGAGAACTTCCTTGTAGTGAACAAGgtaagatatagggtacataatgtggctctgggttagggagcatggcaagc Alignment from CESAR gtGTCATCGCCCAGGAAGTG-AAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagattcctgggtccaagaccacacattttctttctctttttgcacaggtGTCATTGCCCAGGAGGTGCAAGGAGATCTTGCCTGAAGCTGTGGAGGACACAGGGGATGTGGTCTTTGCAAATGGAAAAACCATAGAGAACTTCCTTGTAGTGAACAAGgtaagatatagggtacataatgtggctctgggttagggagcatggcaagc Alignment from Spaln_aa2Genome GGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagattcctgggtccaagaccacacattttctttctctttttgcacaggtgtcattgcccagGAGGTGCAAGGAGATCTTGCCTGAAGCTGTGGAGGACACAGGGGATGTGGTCTTTGCAAATGGAAAAACCATAGAGAACTTCCTTGTAGTGAACAAGgtaagatatagggtacataatgtggctctgggttagggagcatggcaagc Alignment from Spaln_nt2Genome GTGTCATCGCCCAGGAAGTG-AAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagattcctgggtccaagaccacacattttctttctctttttgcacagGTGTCATTGCCCAGGAGGTGCAAGGAGATCTTGCCTGAAGCTGTGGAGGACACAGGGGATGTGGTCTTTGCAAATGGAAAAACCATAGAGAACTTCCTTGTAGTGAACAAGgtaagatatagggtacataatgtggctctgggttagggagcatggcaagc Alignment from Pairagon GTGTCATCGCCCAGGAAGTG-AAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagattcctgggtccaagaccacacattttctttctctttttgcacagGTGTCATTGCCCAGGAGGTGCAAGGAGATCTTGCCTGAAGCTGTGGAGGACACAGGGGATGTGGTCTTTGCAAATGGAAAAACCATAGAGAACTTCCTTGTAGTGAACAAGgtaagatatagggtacataatgtggctctgggttagggagcatggcaagc Alignment from Exonerate_protein2genome GTGTCATCGCCCAGGAAGTG-AAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagattcctgggtccaagaccacacattttctttctctttttgcacagGTGTCATTGCCCAGGAGGTGCAAGGAGATCTTGCCTGAAGCTGTGGAGGACACAGGGGATGTGGTCTTTGCAAATGGAAAAACCATAGAGAACTTCCTTGTAGTGAACAAGgtaagatatagggtacataatgtggctctgggttagggagcatggcaagc Alignment from Exonerate_coding2genome GTGTCATCGCCCAGGAAGTG-AAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagattcctgggtccaagaccacacattttctttctctttttgcacagGTGTCATTGCCCAGGAGGTGCAAGGAGATCTTGCCTGAAGCTGTGGAGGACACAGGGGATGTGGTCTTTGCAAATGGAAAAACCATAGAGAACTTCCTTGTAGTGAACAAGgtaagatatagggtacataatgtggctctgggttagggagcatggcaagc Alignment from GeneWise GGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagattcctgggtccaagaccacacattttctttctctttttgcacaggtgtcattgcccagGAGGTGCAAGGAGATCTTGCCTGAAGCTGTGGAGGACACAGGGGATGTGGTCTTTGCAAATGGAAAAACCATAGAGAACTTCCTTGTAGTGAACAAGgtaagatatagggtacataatgtggctctgggttagggagcatggcaagc #### Naa40_ID2073_7 --> 1 - 2 Original Alignment cACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCAT-GGCGCCTATCAGTTCTTCCGAGAGGCACTGca aatgagcactgactatgtctctaaagtgtagcatttgaatttacttccagcACACAGAGAAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATCGGCGCCTATCAGTTCTTCCAGGAGACACTTcagcaggtaataagacccaggtttggggcctcaaggtagtgaggagacccag Alignment from CESAR cACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCAT-GGCGCCTATCAGTTCTTCCGAGAGGCACTGca aatgagcactgactatgtctctaaagtgtagcatttgaatttacttccagcACACAGAGAAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATCGGCGCCTATCAGTTCTTCCAGGAGACACTTcagcaggtaataagacccaggtttggggcctcaaggtagtgaggagacccag Alignment from Spaln_aa2Genome CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCAT-GGCGCCTATCAGTTCTTCCGAGAGGCACTGCA aatgagcactgactatgtctctaaagtgtagcatttgaatttacttccagCACACAGAGAAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATcGGCGCCTATCAGTTCTTCCAGGAGACACTTCAgcaggtaataagacccaggtttggggcctcaaggtagtgaggagacccag Alignment from Spaln_nt2Genome CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCAT-GGCGCCTATCAGTTCTTCCGAGAGGCACTGCA aatgagcactgactatgtctctaaagtgtagcatttgaatttacttccagCACACAGAGAAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATCGGCGCCTATCAGTTCTTCCAGGAGACACTTCAgcaggtaataagacccaggtttggggcctcaaggtagtgaggagacccag Alignment from Pairagon CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCAT-GGCGCCTATCAGTTCTTCCGAGAGGCACTGCA aatgagcactgactatgtctctaaagtgtagcatttgaatttacttccagCACACAGAGAAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATCGGCGCCTATCAGTTCTTCCAGGAGACACTTCAgcaggtaataagacccaggtttggggcctcaaggtagtgaggagacccag Alignment from Exonerate_protein2genome CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCAT-GGCGCCTATCAGTTCTTCCGAGAGGCACTGCA aatgagcactgactatgtctctaaagtgtagcatttgaatttacttccagCACACAGAGAAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATCGGCGCCTATCAGTTCTTCCAGGAGACACTTCAgcaggtaataagacccaggtttggggcctcaaggtagtgaggagacccag Alignment from Exonerate_coding2genome CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCAT-GGCGCCTATCAGTTCTTCCGAGAGGCACTGCA aatgagcactgactatgtctctaaagtgtagcatttgaatttacttccagCACACAGAGAAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATCGGCGCCTATCAGTTCTTCCAGGAGACACTTCAgcaggtaataagacccaggtttggggcctcaaggtagtgaggagacccag Alignment from GeneWise CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCAT-GGCGCCTATCAGTTCTTCCGAGAGGCACTGCAG----------------- aatgagcactgactatgtctctaaagtgtagcatttgaatttacttccagCACACAGAGAAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATCGGCGCCTATCAGTTCTTCCAGGAGACACTTCAGCAGGTAATAAGACCCAGgtttggggcctcaaggtagtgaggagacccag #### Naaladl1_ID1443_2 --> 1 - 1 Original Alignment aGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCA-GAGCAGCCTAACAGCGTGGAAGTCg cagaggcttcgactactaatagattttatttctctctctttttcctttagaGAACTCGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACTCAGCCAAGACCTATGAGTATCGGGTCCTGCTCTCTTTCCCCAATGCACGAGCAGGCTAACAGTGTGGAAGTTggtatgttcaagtccaggaatgtcagggggggaaggcctttgtttctatct Alignment from CESAR aGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCA-GAGCAGCCTAACAGCGTGGAAGTCg cagaggcttcgactactaatagattttatttctctctctttttcctttagaGAACTCGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACTCAGCCAAGACCTATGAGTATCGGGTCCTGCTCTCTTTCCCCAATGCACGAGCAGGCTAACAGTGTGGAAGTTggtatgttcaagtccaggaatgtcagggggggaagggaattgttcttttct Alignment from Spaln_aa2Genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCA-GAGCAGCCTAACAGCGTGGAAGTCG cagaggcttcgactactaatagattttatttctctctctttttcctttagAGAACTCGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACTCAGCCAAGACCTATGAGTATCGGGTCCTGCTCTCTTTCCCCAATGCAcGAGCAGGCTAACAGTGTGGAAGTTGgtatgttcaagtccaggaatgtcagggggggaaggcctttgtttctatct Alignment from Spaln_nt2Genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCA-GAGCAGCCTAACAGCGTGGAAGTCG cagaggcttcgactactaatagattttatttctctctctttttcctttagAGAACTCGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACTCAGCCAAGACCTATGAGTATCGGGTCCTGCTCTCTTTCCCCAATGCACGAGCAGGCTAACAGTGTGGAAGTTGgtatgttcaagtccaggaatgtcagggggggaaggcctttgtttctatct Alignment from Pairagon AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCA-GAGCAGCCTAACAGCGTGGAAGTCG cagaggcttcgactactaatagattttatttctctctctttttcctttagAGAACTCGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACTCAGCCAAGACCTATGAGTATCGGGTCCTGCTCTCTTTCCCCAATGCACGAGCAGGCTAACAGTGTGGAAGTTGgtatgttcaagtccaggaatgtcagggggggaaggcctttgtttctatct Alignment from Exonerate_protein2genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCA-GAGCAGCCTAACAGCGTGGAAGTCG cagaggcttcgactactaatagattttatttctctctctttttcctttagAGAACTCGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACTCAGCCAAGACCTATGAGTATCGGGTCCTGCTCTCTTTCCCCAATGCACGAGCAGGCTAACAGTGTGGAAGTTGgtatgttcaagtccaggaatgtcagggggggaaggcctttgtttctatct Alignment from Exonerate_coding2genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCA-GAGCAGCCTAACAGCGTGGAAGTCG cagaggcttcgactactaatagattttatttctctctctttttcctttagAGAACTCGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACTCAGCCAAGACCTATGAGTATCGGGTCCTGCTCTCTTTCCCCAATGCACGAGCAGGCTAACAGTGTGGAAGTTGgtatgttcaagtccaggaatgtcagggggggaaggcctttgtttctatct Alignment from GeneWise AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAAC-GCAGAGCAGCCTAACAGCGTGGAAGTC--------------------------------------------------- cagaggcttcgactactaatagattttatttctctctctttttcctttagAGAACTCGCAAAGGAACCACATGTGGCCACCAGCACTCGGGATGAAGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACTCAGCCAAGACCTATGAGTATCGGGTCCTGCTCTCTTTCCCCAATGCACGAGCAGGCTAACAGTGTGGAAGTTGGTATGTTCAAGTCCAGGAATGTCAGGGGGGGAAGGCCTTTGTTTCTATCT #### Naaladl1_ID1447_6 --> 1 - 2 Original Alignment tAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGC-TGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGag aattgtaggtactgaaactgcctgccctacaccaggtcatttgtttccagtAACCTCACGGGAACCTCTGCCCCTGCTTTCTGGCAGAGGGCCCTAGGCCTGTGAGTACAAACTAGGACCTGGATTTGAGCCAAATGAAAGCTTCCCTGATGGGaggtatgtcaggacatcctttatctattccttccctctcttgttgatttgtt Alignment from CESAR tAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGC-TGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGag aattgtaggtactgaaactgcctgccctacaccaggtcatttgtttccagtAACCTCACGGGAACCTCTGCCCCTGCTTTCTGGCAGAGGGCCCTAGGCCTGTGAGTACAAACTAGGACCTGGATTTGAGCCAAATGAAAGCTTCCCTGATGGGaggtatgtcaggacatcctttatctattccttccctctcttgttgatttgtt Alignment from Spaln_aa2Genome TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGC-TGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgtaggtactgaaactgcctgccctacaccaggtcatttgtttccagTAACCTCACGGGAACCTCTGCCCCTGCTTTCTGGCAGAGGGCCCTAGGCcTGTGAGTACAAACTAGGACCTGGATTTGAGCCAAATGAAAGCTTCCCTGATGGGAGgtatgtcaggacatcctttatctattccttccctctcttgttgatttgtt Alignment from Spaln_nt2Genome TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTG-GGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgtaggtactgaaactgcctgccctacaccaggtcatttgtttccagTAACCTCACGGGAACCTCTGCCCCTGCTTTCTGGCAGAGGGCCCTAGGCCTGTGAGTACAAACTAGGACCTGGATTTGAGCCAAATGAAAGCTTCCCTGATGGGAGgtatgtcaggacatcctttatctattccttccctctcttgttgatttgtt Alignment from Pairagon TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGG-CTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgtaggtactgaaactgcctgccctacaccaggtcatttgtttccagTAACCTCACGGGAACCTCTGCCCCTGCTTTCTGGCAGAGGGCCCTAGGCCTGTGAGTACAAACTAGGACCTGGATTTGAGCCAAATGAAAGCTTCCCTGATGGGAGgtatgtcaggacatcctttatctattccttccctctcttgttgatttgtt Alignment from Exonerate_protein2genome TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGC-TGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgtaggtactgaaactgcctgccctacaccaggtcatttgtttccagTAACCTCACGGGAACCTCTGCCCCTGCTTTCTGGCAGAGGGCCCTAGGCCTGTGAGTACAAACTAGGACCTGGATTTGAGCCAAATGAAAGCTTCCCTGATGGGAGgtatgtcaggacatcctttatctattccttccctctcttgttgatttgtt Alignment from Exonerate_coding2genome TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGC-TGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgtaggtactgaaactgcctgccctacaccaggtcatttgtttccagTAACCTCACGGGAACCTCTGCCCCTGCTTTCTGGCAGAGGGCCCTAGGCCTGTGAGTACAAACTAGGACCTGGATTTGAGCCAAATGAAAGCTTCCCTGATGGGAGgtatgtcaggacatcctttatctattccttccctctcttgttgatttgtt Alignment from GeneWise TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTG-GGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgtaggtactgaaactgcctgccctacaccaggtcatttgtttccagTAACCTCACGGGAACCTCTGCCCCTGCTTTCTGGCAGAGGGCCCTAGGCCTGTGAGTACAAACTAGGACCTGGATTTGAGCCAAATGAAAGCTTCCCTGATGGGAGgtatgtcaggacatcctttatctattccttccctctcttgttgatttgtt #### Naaladl1_ID1453_12 --> 0 - 2 Original Alignment ATCAGTGCACCA-GGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCag ggtgttaaagcggggttttgcctgctataccttgatgaatcctgtgacagATCAGTGCACCACGGGTCCAGTGGCCTCAGGATCTATGATAATTGGATCCGATATACCAACCGTGCCAGTCCAGTATATGGGCTGGTTCCCaggtaagttcagaacccagtcaggtaggcccattggcccagcatgtccacat Alignment from CESAR ATCAGTGCACCA-GGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCag ggtgttaaagcggggttttgcctgctataccttgatgaatcctgtgacagATCAGTGCACCACGGGTCCAGTGGCCTCAGGATCTATGATAATTGGATCCGATATACCAACCGTGCCAGTCCAGTATATGGGCTGGTTCCCaggtaagttcagaacccagtcaggtaggcccattggcccagcatgtccactt Alignment from Spaln_aa2Genome -----AGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG ggtgttaaagcggggttttgcctgctataccttgatgaatcctgtgacagATCAGTGCACCACGGGTCCAGTGGCCTCAGGATCTATGATAATTGGATCCGATATACCAACCGTGCCAGTCCAGTATATGGGCTGGTTCCCAGgtaagttcagaacccagtcaggtaggcccattggcccagcatgtccacat Alignment from Spaln_nt2Genome ATCAGTGCACCA-GGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG ggtgttaaagcggggttttgcctgctataccttgatgaatcctgtgacagATCAGTGCACCACGGGTCCAGTGGCCTCAGGATCTATGATAATTGGATCCGATATACCAACCGTGCCAGTCCAGTATATGGGCTGGTTCCCAGgtaagttcagaacccagtcaggtaggcccattggcccagcatgtccacat Alignment from Pairagon ATCAGTGCACCA-GGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG ggtgttaaagcggggttttgcctgctataccttgatgaatcctgtgacagATCAGTGCACCACGGGTCCAGTGGCCTCAGGATCTATGATAATTGGATCCGATATACCAACCGTGCCAGTCCAGTATATGGGCTGGTTCCCAGgtaagttcagaacccagtcaggtaggcccattggcccagcatgtccacat Alignment from Exonerate_protein2genome ATCAGTGCACCA-GGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG ggtgttaaagcggggttttgcctgctataccttgatgaatcctgtgacagATCAGTGCACCACGGGTCCAGTGGCCTCAGGATCTATGATAATTGGATCCGATATACCAACCGTGCCAGTCCAGTATATGGGCTGGTTCCCAGgtaagttcagaacccagtcaggtaggcccattggcccagcatgtccacat Alignment from Exonerate_coding2genome ATCAGTGCACCA-GGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG ggtgttaaagcggggttttgcctgctataccttgatgaatcctgtgacagATCAGTGCACCACGGGTCCAGTGGCCTCAGGATCTATGATAATTGGATCCGATATACCAACCGTGCCAGTCCAGTATATGGGCTGGTTCCCAGgtaagttcagaacccagtcaggtaggcccattggcccagcatgtccacat Alignment from GeneWise -------GCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG ggtgttaaagcggggttttgcctgctataccttgatgaatcctgtgacagATCAGTGCACCACGGGTCCAGTGGCCTCAGGATCTATGATAATTGGATCCGATATACCAACCGTGCCAGTCCAGTATATGGGCTGGTTCCCAGgtaagttcagaacccagtcaggtaggcccattggcccagcatgtccacat #### Naaladl1_ID1456_15 --> 2 - 1 Original Alignment gtTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTC-TTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGg gacaaaagggtgggatctggatgtggctcatgatgtcacttccctcccaggtTTTAGCAGCCACCAAGCTGTCGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGACAGCCTCCTTCCTGCCCCTAAATGTCAGTGACTATAGTGAGACCTTACAAGGTTTCCTCCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGAAGCAGAATGTTAGCCTGggtgagccaaggaactctgcatccacaggcagggccgacagatcttcctcc Alignment from CESAR gtTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTC-TTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGg gacaaaagggtgggatctggatgtggctcatgatgtcacttccctcccaggtTTTAGCAGCCACCAAGCTGTCGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGACAGCCTCCTTCCTGCCCCTAAATGTCAGTGACTATAGTGAGACCTTACAAGGTTTCCTCCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGAAGCAGAATGTTAGCCTGggtgagccaaggaactctgcatccacaggcagggcctttattatgtgacac Alignment from Spaln_aa2Genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTC-TTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG gacaaaagggtgggatctggatgtggctcatgatgtcacttccctcccagGTTTTAGCAGCCACCAAGCTGTCGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGACAGCCTCcTTCCTGCCCCTAAATGTCAGTGACTATAGTGAGACCTTACAAGGTTTCCTCCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGAAGCAGAATGTTAGCCTGGgtgagccaaggaactctgcatccacaggcagggccgacagatcttcctcc Alignment from Spaln_nt2Genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCT-CTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG gacaaaagggtgggatctggatgtggctcatgatgtcacttccctcccagGTTTTAGCAGCCACCAAGCTGTCGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGACAGCCTCCTTCCTGCCCCTAAATGTCAGTGACTATAGTGAGACCTTACAAGGTTTCCTCCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGAAGCAGAATGTTAGCCTGGgtgagccaaggaactctgcatccacaggcagggccgacagatcttcctcc Alignment from Pairagon GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCT-CTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG gacaaaagggtgggatctggatgtggctcatgatgtcacttccctcccagGTTTTAGCAGCCACCAAGCTGTCGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGACAGCCTCCTTCCTGCCCCTAAATGTCAGTGACTATAGTGAGACCTTACAAGGTTTCCTCCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGAAGCAGAATGTTAGCCTGGgtgagccaaggaactctgcatccacaggcagggccgacagatcttcctcc Alignment from Exonerate_protein2genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTC-TTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG gacaaaagggtgggatctggatgtggctcatgatgtcacttccctcccagGTTTTAGCAGCCACCAAGCTGTCGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGACAGCCTCCTTCCTGCCCCTAAATGTCAGTGACTATAGTGAGACCTTACAAGGTTTCCTCCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGAAGCAGAATGTTAGCCTGGgtgagccaaggaactctgcatccacaggcagggccgacagatcttcctcc Alignment from Exonerate_coding2genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTC-TTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG gacaaaagggtgggatctggatgtggctcatgatgtcacttccctcccagGTTTTAGCAGCCACCAAGCTGTCGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGACAGCCTCCTTCCTGCCCCTAAATGTCAGTGACTATAGTGAGACCTTACAAGGTTTCCTCCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGAAGCAGAATGTTAGCCTGGgtgagccaaggaactctgcatccacaggcagggccgacagatcttcctcc Alignment from GeneWise GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGC-CTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTG--------------------------------------------------- gacaaaagggtgggatctggatgtggctcatgatgtcacttccctcccagGTTTTAGCAGCCACCAAGCTGTCGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGACAGCCTCCTTCCTGCCCCTAAATGTCAGTGACTATAGTGAGACCTTACAAGGTTTCCTCCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGAAGCAGAATGTTAGCCTGGGTGAGCCAAGGAACTCTGCATCCACAGGCAGGGCCGACAGATCTTCCTCC #### Ndufs8_ID193_3 --> 2 - 1 Original Alignment agTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGAC-AATGCAGCTCGGATT---CTGATGTGGACAGAACTCATCCGAg cctgaacttgaatggcgttgccattaaccctccctctcacatacctttagagTATGTAAACAAGAAAGAACAAGAGTCTGAGGTAGACATGAAGTCTGCGACTGACCAATGCTGCTCAGATTCTGATGATGTGGACAAAACTAATCCGGggtaggtaccagtgaagggccaaaaggggaaatccaagcagcaatgtttgg Alignment from CESAR agTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGAC-AATGCAGCTCGGATTCTG---ATGTGGACAGAACTCATCCGAg cctgaacttgaatggcgttgccattaaccctccctctcacatacctttagagTATGTAAACAAGAAAGAACAAGAGTCTGAGGTAGACATGAAGTCTGCGACTGACCAATGCTGCTCAGATTCTGATGATGTGGACAAAACTAATCCGGggtaggtaccagtgaagggccaaaaggggaaatccaagcagcaatgtttgg Alignment from Spaln_aa2Genome AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGAC-AATGCAGCTCGGATTCTG---ATGTGGACAGAACTCATCCGAG cctgaacttgaatggcgttgccattaaccctccctctcacatacctttagAGTATGTAAACAAGAAAGAACAAGAGTCTGAGGTAGACATGAAGTCTGCGACTGACcAATGCTGCTCAGATTCTGATGATGTGGACAAAACTAATCCGGGgtaggtaccagtgaagggccaaaaggggaaatccaagcagcaatgtttgg Alignment from Spaln_nt2Genome AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGAC-AATGCAGCTCGGATTCTGATG---TGGACAGAACTCATCCGAG cctgaacttgaatggcgttgccattaaccctccctctcacatacctttagAGTATGTAAACAAGAAAGAACAAGAGTCTGAGGTAGACATGAAGTCTGCGACTGACCAATGCTGCTCAGATTCTGATGATGTGGACAAAACTAATCCGGGgtaggtaccagtgaagggccaaaaggggaaatccaagcagcaatgtttgg Alignment from Pairagon AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGA-CAATGCAGCTCGGATTC---TGATGTGGACAGAACTCATCCGAG cctgaacttgaatggcgttgccattaaccctccctctcacatacctttagAGTATGTAAACAAGAAAGAACAAGAGTCTGAGGTAGACATGAAGTCTGCGACTGACCAATGCTGCTCAGATTCTGATGATGTGGACAAAACTAATCCGGGgtaggtaccagtgaagggccaaaaggggaaatccaagcagcaatgtttgg Alignment from Exonerate_protein2genome AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGAC-AATGCAGCTCGGATTCTG---ATGTGGACAGAACTCATCCGAG cctgaacttgaatggcgttgccattaaccctccctctcacatacctttagAGTATGTAAACAAGAAAGAACAAGAGTCTGAGGTAGACATGAAGTCTGCGACTGACCAATGCTGCTCAGATTCTGATGATGTGGACAAAACTAATCCGGGgtaggtaccagtgaagggccaaaaggggaaatccaagcagcaatgtttgg Alignment from Exonerate_coding2genome cctgaacttgaatggcgttgccattaaccctccctctcacatacctttagagtatgtaaacaagaaagaacaagagtctgaggtagacatgaagtctgcgactgaccaatgctgctcagattctgatgatgtggacaaaactaatccggggtaggtaccagtgaagggccaaaaggggaaatccaagcagcaatgtttgg Alignment from GeneWise AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGAC-AATGCAGCTCGGATTCTGATG---TGGACAGAACTCATCCGAG cctgaacttgaatggcgttgccattaaccctccctctcacatacctttagAGTATGTAAACAAGAAAGAACAAGAGTCTGAGGTAGACATGAAGTCTGCGACTGACCAATGCTGCTCAGATTCTGATGATGTGGACAAAACTAATCCGGGgtaggtaccagtgaagggccaaaaggggaaatccaagcagcaatgtttgg #### Ndufs8_ID194_2 --> 2 - 1 Original Alignment gaCATCTTAATGGACAAAGCCTTCATAGCAGCGCAGTG-GCGGCAACGTACa ctgggggttgaggaacagggcttcctggcaaaataaatatattattttaggaCATCTTAATGGACAAAGCCTGCACAGCAGTGCAGTGCGCATCAACGTACagtaagtagccaacattcaaattaggcttataagacccttggcacgctgaa Alignment from CESAR gaCATCTTAATGGACAAAGCCTTCATAGCAGCGCAGTG-GCGGCAACGTACa ctgggggttgaggaacagggcttcctggcaaaataaatatattattttaggaCATCTTAATGGACAAAGCCTGCACAGCAGTGCAGTGCGCATCAACGTACagtaagtagccaacattcaaattaggcttataagacccttggcacgctgaa Alignment from Spaln_aa2Genome GACATCTTAATGGACAAAGCCTTCATAGCAGCGCAGTG-GCGGCAACGTACA ctgggggttgaggaacagggcttcctggcaaaataaatatattattttagGACATCTTAATGGACAAAGCCTGCACAGCAGTGCAGTGcGCATCAACGTACAgtaagtagccaacattcaaattaggcttataagacccttggcacgctgaa Alignment from Spaln_nt2Genome GACATCTTAATGGACAAAGCCTTCATAGCAGCGCAGTG-GCGGCAACGTACA ctgggggttgaggaacagggcttcctggcaaaataaatatattattttagGACATCTTAATGGACAAAGCCTGCACAGCAGTGCAGTGCGCATCAACGTACAgtaagtagccaacattcaaattaggcttataagacccttggcacgctgaa Alignment from Pairagon GACATCTTAATGGACAAAGCCTTCATAGCAGCGCAGTG-GCGGCAACGTACA ctgggggttgaggaacagggcttcctggcaaaataaatatattattttagGACATCTTAATGGACAAAGCCTGCACAGCAGTGCAGTGCGCATCAACGTACAgtaagtagccaacattcaaattaggcttataagacccttggcacgctgaa Alignment from Exonerate_protein2genome GACATCTTAATGGACAAAGCCTTCATAGCAGCGCAGTG-GCGGCAACGTACA ctgggggttgaggaacagggcttcctggcaaaataaatatattattttagGACATCTTAATGGACAAAGCCTGCACAGCAGTGCAGTGCGCATCAACGTACAgtaagtagccaacattcaaattaggcttataagacccttggcacgctgaa Alignment from Exonerate_coding2genome GACATCTTAATGGACAAAGCCTTCATAGCAGCGCAGTG-GCGGCAACGTACA ctgggggttgaggaacagggcttcctggcaaaataaatatattattttagGACATCTTAATGGACAAAGCCTGCACAGCAGTGCAGTGCGCATCAACGTACAgtaagtagccaacattcaaattaggcttataagacccttggcacgctgaa Alignment from GeneWise GACATCTTAATGGACAAAGCCTTCATAGCAGCGCAGTGGCGGCAACG ctgggggttgaggaacagggcttcctggcaaaataaatatattattttagGACATCTTAATGGACAAAGCCTGCACAGCAGTGCAGTGCGCATCAACgtacagtaagtagccaacattcaaattaggcttataagacccttggcacgctgaa #### Ndufv1_ID273_9 --> 2 - 0 Original Alignment gcGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGAT-GCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG aagtgtgtatatgagtattgtaaattcatttgcttgttttaaaattttaggtGTTGACTGGATGAACACGGTGGTAGCCCGATTTGTGAAAGGCGATCGCCTGTCCGGCTGAGATTGATTCCCTGTGGGAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTGGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaggtaaagtcttcctgtatccaaagccttcctgtatcacaggaagggc Alignment from CESAR gcGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGAT-GCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG aagtgtgtatatgagtattgtaaattcatttgcttgttttaaaattttaggtGTTGACTGGATGAACACGGTGGTAGCCCGATTTGTGAAAGGCGATCGCCTGTCCGGCTGAGATTGATTCCCTGTGGGAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTGGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaggtaaagtcttcctgtatccaaagccttcctgtatcacaggaagggc Alignment from Spaln_aa2Genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGAT-GCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG aagtgtgtatatgagtattgtaaattcatttgcttgttttaaaattttagGTGTTGACTGGATGAACACGGTGGTAGCCCGATTTGTGAAAGGCGATcGCCTGTCCGGCTGAGATTGATTCCCTGTGGGAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTGGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaggtaaagtcttcctgtatccaaagccttcctgtatcacaggaagggc Alignment from Spaln_nt2Genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGAT-GCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG aagtgtgtatatgagtattgtaaattcatttgcttgttttaaaattttagGTGTTGACTGGATGAACACGGTGGTAGCCCGATTTGTGAAAGGCGATCGCCTGTCCGGCTGAGATTGATTCCCTGTGGGAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTGGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaggtaaagtcttcctgtatccaaagccttcctgtatcacaggaagggc Alignment from Pairagon GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGAT-GCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG aagtgtgtatatgagtattgtaaattcatttgcttgttttaaaattttagGTGTTGACTGGATGAACACGGTGGTAGCCCGATTTGTGAAAGGCGATCGCCTGTCCGGCTGAGATTGATTCCCTGTGGGAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTGGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaggtaaagtcttcctgtatccaaagccttcctgtatcacaggaagggc Alignment from Exonerate_protein2genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGAT-GCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG aagtgtgtatatgagtattgtaaattcatttgcttgttttaaaattttagGTGTTGACTGGATGAACACGGTGGTAGCCCGATTTGTGAAAGGCGATCGCCTGTCCGGCTGAGATTGATTCCCTGTGGGAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTGGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaggtaaagtcttcctgtatccaaagccttcctgtatcacaggaagggc Alignment from Exonerate_coding2genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGAT-GCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG aagtgtgtatatgagtattgtaaattcatttgcttgttttaaaattttagGTGTTGACTGGATGAACACGGTGGTAGCCCGATTTGTGAAAGGCGATCGCCTGTCCGGCTGAGATTGATTCCCTGTGGGAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTGGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaggtaaagtcttcctgtatccaaagccttcctgtatcacaggaagggc Alignment from GeneWise GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCC-CGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG aagtgtgtatatgagtattgtaaattcatttgcttgttttaaaattttagGTGTTGACTGGATGAACACGGTGGTAGCCCGATTTGTGAAAGGCGATCGCCTGTCCGGCTGAGATTGATTCCCTGTGGGAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTGGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaggtaaagtcttcctgtatccaaagccttcctgtatcacaggaagggc #### Ndufv1_ID274_8 --> 0 - 1 Original Alignment ACAGACATTGTGAAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAG-AGCTGTGGCCAGTGTACCCCGTGCCGTGAGg tattgtggggtgatggctaggatgtctgggatgctctgggtctcttgtagACAGACATTGTGAAAGCCATTGCTCATCTCATTGAGTTCTATAAGCATGAGCAGCTGTGGTCAGTGTACCCCATGCCGTGAGggtgtgttttctgtaaatattggcatgttgttgcaatgttcccaagattct Alignment from CESAR ACAGACATTGTGAAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAG-AGCTGTGGCCAGTGTACCCCGTGCCGTGAGg tattgtggggtgatggctaggatgtctgggatgctctgggtctcttgtagACAGACATTGTGAAAGCCATTGCTCATCTCATTGAGTTCTATAAGCATGAGCAGCTGTGGTCAGTGTACCCCATGCCGTGAGggtgtgttttctgtaaatattggcatgttgttgcaatgttcccaagattct Alignment from Spaln_aa2Genome ACAGACATTGTGAAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAG-AGCTGTGGCCAGTGTACCCCGTGCCGTGAGG tattgtggggtgatggctaggatgtctgggatgctctgggtctcttgtagACAGACATTGTGAAAGCCATTGCTCATCTCATTGAGTTCTATAAGCATGAGcAGCTGTGGTCAGTGTACCCCATGCCGTGAGGgtgtgttttctgtaaatattggcatgttgttgcaatgttcccaagattct Alignment from Spaln_nt2Genome ACAGACATTGTGAAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAG-AGCTGTGGCCAGTGTACCCCGTGCCGTGAGG tattgtggggtgatggctaggatgtctgggatgctctgggtctcttgtagACAGACATTGTGAAAGCCATTGCTCATCTCATTGAGTTCTATAAGCATGAGCAGCTGTGGTCAGTGTACCCCATGCCGTGAGGgtgtgttttctgtaaatattggcatgttgttgcaatgttcccaagattct Alignment from Pairagon ACAGACATTGTGAAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAG-AGCTGTGGCCAGTGTACCCCGTGCCGTGAGG tattgtggggtgatggctaggatgtctgggatgctctgggtctcttgtagACAGACATTGTGAAAGCCATTGCTCATCTCATTGAGTTCTATAAGCATGAGCAGCTGTGGTCAGTGTACCCCATGCCGTGAGGgtgtgttttctgtaaatattggcatgttgttgcaatgttcccaagattct Alignment from Exonerate_protein2genome ACAGACATTGTGAAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAG-AGCTGTGGCCAGTGTACCCCGTGCCGTGAGG tattgtggggtgatggctaggatgtctgggatgctctgggtctcttgtagACAGACATTGTGAAAGCCATTGCTCATCTCATTGAGTTCTATAAGCATGAGCAGCTGTGGTCAGTGTACCCCATGCCGTGAGGgtgtgttttctgtaaatattggcatgttgttgcaatgttcccaagattct Alignment from Exonerate_coding2genome ACAGACATTGTGAAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAG-AGCTGTGGCCAGTGTACCCCGTGCCGTGAGG tattgtggggtgatggctaggatgtctgggatgctctgggtctcttgtagACAGACATTGTGAAAGCCATTGCTCATCTCATTGAGTTCTATAAGCATGAGCAGCTGTGGTCAGTGTACCCCATGCCGTGAGGgtgtgttttctgtaaatattggcatgttgttgcaatgttcccaagattct Alignment from GeneWise ACAGACATTGTGAAAGCCATCGCTCGTCTCATTGAGTTCTACAAGCATGAG-AGCTGTGGCCAGTGTACCCCGTGCCGTGAGG tattgtggggtgatggctaggatgtctgggatgctctgggtctcttgtagACAGACATTGTGAAAGCCATTGCTCATCTCATTGAGTTCTATAAGCATGAGCAGCTGTGGTCAGTGTACCCCATGCCGTGAGGgtgtgttttctgtaaatattggcatgttgttgcaatgttcccaagattct #### Ndufv1_ID280_2 --> 0 - 2 Original Alignment ACAGCACCCAAGAAAACCTCA-TTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAACCTGTATGGGCGCCATGACTGGag ccaacctcatggttgctaggtctggatctctcacttaatttccactctagACAGCACCCAAGAAAACCTCACTTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAATCTGTATGGGCGCCATGACTGGaggtaagtcaaggccatgacctcggcacagaaatattgtacctctttgtgat Alignment from CESAR ACAGCACCCAAGAAAACCTCA-TTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAACCTGTATGGGCGCCATGACTGGag ccaacctcatggttgctaggtctggatctctcacttaatttccactctagACAGCACCCAAGAAAACCTCACTTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAATCTGTATGGGCGCCATGACTGGaggtaagtcaaggccatgacctcggcacagaaattatcgtccccatttctgc Alignment from Spaln_aa2Genome ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAACCTGTATGGGCGCCATGACTGGAG ccaacctcatggttgctaggtctggatctctcacttaatttccactctagacagCAC---CCAAGAAAACCTCACTTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAATCTGTATGGGCGCCATGACTGGAGgtaagtcaaggccatgacctcggcacagaaatattgtacctctttgtgat Alignment from Spaln_nt2Genome ACAGCACCCAAGAAAACCTCA-TTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAACCTGTATGGGCGCCATGACTGGAG ccaacctcatggttgctaggtctggatctctcacttaatttccactctagACAGCACCCAAGAAAACCTCACTTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAATCTGTATGGGCGCCATGACTGGAGgtaagtcaaggccatgacctcggcacagaaatattgtacctctttgtgat Alignment from Pairagon ACAGCACCCAAGAAAACCTCA-TTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAACCTGTATGGGCGCCATGACTGGAG ccaacctcatggttgctaggtctggatctctcacttaatttccactctagACAGCACCCAAGAAAACCTCACTTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAATCTGTATGGGCGCCATGACTGGAGgtaagtcaaggccatgacctcggcacagaaatattgtacctctttgtgat Alignment from Exonerate_protein2genome ACAGCACCCAAGAAAACCTCA-TTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAACCTGTATGGGCGCCATGACTGGAG ccaacctcatggttgctaggtctggatctctcacttaatttccactctagACAGCACCCAAGAAAACCTCACTTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAATCTGTATGGGCGCCATGACTGGAGgtaagtcaaggccatgacctcggcacagaaatattgtacctctttgtgat Alignment from Exonerate_coding2genome ACAGCACCCAAGAAAACCTCA-TTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAACCTGTATGGGCGCCATGACTGGAG ccaacctcatggttgctaggtctggatctctcacttaatttccactctagACAGCACCCAAGAAAACCTCACTTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAATCTGTATGGGCGCCATGACTGGAGgtaagtcaaggccatgacctcggcacagaaatattgtacctctttgtgat Alignment from GeneWise ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAACCTGTATGGGCGCCATGACTGGAG ccaacctcatggttgctaggtctggatctctcacttaatttccactctagacagCAC---CCAAGAAAACCTCACTTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAATCTGTATGGGCGCCATGACTGGAGgtaagtcaaggccatgacctcggcacagaaatattgtacctctttgtgat #### Nfkb2_ID9824_2 --> 0 - 1 Original Alignment GGCCTGGATGGCATCCCCGAATATGATGATTTTGAATTCAGCCCCTCCATCGTGGAG-CCTAAGGATCCAGCCCCTGAGACAg gattaggtggtcccttgatacagctacctgtctctttggggatgagttagGGGCTGGATGGAATCCCGGATTATGAGGATTTTGAATTCAGCCCAACTATAGTGGAGCCCTAATGATCCAGCCCCTGAGACAggtatgtaaatctttggtgtcactgcatctcagaacctggaggagattgag Alignment from CESAR GGCCTGGATGGCATCCCCGAATATGATGATTTTGAATTCAGCCCCTCCATCGTGGAG-CCTAAGGATCCAGCCCCTGAGACAg gattaggtggtcccttgatacagctacctgtctctttggggatgagttagGGGCTGGATGGAATCCCGGATTATGAGGATTTTGAATTCAGCCCAACTATAGTGGAGCCCTAATGATCCAGCCCCTGAGACAggtatgtaaatctttggtgtcactgcatctcagaacctggaggagattgag Alignment from Spaln_aa2Genome GGCCTGGATGGCATCCCCGAATATGATGATTTTGAATTCAGCCCCTCCATCGTGGAG-CCTAAGGATCCAGCCCCTGAGACAG gattaggtggtcccttgatacagctacctgtctctttggggatgagttagGGGCTGGATGGAATCCCGGATTATGAGGATTTTGAATTCAGCCCAACTATAGTGGAGcCCTAATGATCCAGCCCCTGAGACAGgtatgtaaatctttggtgtcactgcatctcagaacctggaggagattgag Alignment from Spaln_nt2Genome GGCCTGGATGGCATCCCCGAATATGATGATTTTGAATTCAGCCCCTCCATCGTGGAGCC-TAAGGATCCAGCCCCTGAGACAG gattaggtggtcccttgatacagctacctgtctctttggggatgagttagGGGCTGGATGGAATCCCGGATTATGAGGATTTTGAATTCAGCCCAACTATAGTGGAGCCCTAATGATCCAGCCCCTGAGACAGgtatgtaaatctttggtgtcactgcatctcagaacctggaggagattgag Alignment from Pairagon GGCCTGGATGGCATCCCCGAATATGATGATTTTGAATTCAGCCCCTCCATCGTGGAG-CCTAAGGATCCAGCCCCTGAGACAG gattaggtggtcccttgatacagctacctgtctctttggggatgagttagGGGCTGGATGGAATCCCGGATTATGAGGATTTTGAATTCAGCCCAACTATAGTGGAGCCCTAATGATCCAGCCCCTGAGACAGgtatgtaaatctttggtgtcactgcatctcagaacctggaggagattgag Alignment from Exonerate_protein2genome GGCCTGGATGGCATCCCCGAATATGATGATTTTGAATTCAGCCCCTCCATCGTGGAG-CCTAAGGATCCAGCCCCTGAGACAG gattaggtggtcccttgatacagctacctgtctctttggggatgagttagGGGCTGGATGGAATCCCGGATTATGAGGATTTTGAATTCAGCCCAACTATAGTGGAGCCCTAATGATCCAGCCCCTGAGACAGgtatgtaaatctttggtgtcactgcatctcagaacctggaggagattgag Alignment from Exonerate_coding2genome GGCCTGGATGGCATCCCCGAATATGATGATTTTGAATTCAGCCCCTCCATCGTGGAG-CCTAAGGATCCAGCCCCTGAGACAG gattaggtggtcccttgatacagctacctgtctctttggggatgagttagGGGCTGGATGGAATCCCGGATTATGAGGATTTTGAATTCAGCCCAACTATAGTGGAGCCCTAATGATCCAGCCCCTGAGACAGgtatgtaaatctttggtgtcactgcatctcagaacctggaggagattgag Alignment from GeneWise GACAATTGCTACGATCCAGGCCTGGATGGCATCCCCGAATATGATGATTTTGAATTCAGCCCCTCCATCGTGGAGCCT-AAGGATCCAGCCCCTGAGACAG gattaggtggtcccttgatacagctacctgtctctttggggatgagttag------------------GGGCTGGATGGAATCCCGGATTATGAGGATTTTGAATTCAGCCCAACTATAGTGGAGCCCTAATGATCCAGCCCCTGAGACAGgtatgtaaatctttggtgtcactgcatctcagaacctggaggagattgag #### Nfkb2_ID9827_5 --> 0 - 2 Original Alignment ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTG-GGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTca gatgacaatgttctgtagggtgcatggacttttctgctttcgcccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGCGGCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCATCTCTGTAGGACCCAAGGACATGACTGCTcagtaagagatgcttccctgtcctggagtggcatgattttctgcacagcctc Alignment from CESAR ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTG-GGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTca gatgacaatgttctgtagggtgcatggacttttctgctttcgcccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGCGGCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCATCTCTGTAGGACCCAAGGACATGACTGCTcagtaagagatgcttccctgtcctggagtggcatgattttctgcacagcctc Alignment from Spaln_aa2Genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTG-GGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gatgacaatgttctgtagggtgcatggacttttctgctttcgcccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGcGGCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCATCTCTGTAGGACCCAAGGACATGACTGCTCAgtaagagatgcttccctgtcctggagtggcatgattttctgcacagcctc Alignment from Spaln_nt2Genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTG-GGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gatgacaatgttctgtagggtgcatggacttttctgctttcgcccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGCGGCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCATCTCTGTAGGACCCAAGGACATGACTGCTCAgtaagagatgcttccctgtcctggagtggcatgattttctgcacagcctc Alignment from Pairagon ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTG-GGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gatgacaatgttctgtagggtgcatggacttttctgctttcgcccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGCGGCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCATCTCTGTAGGACCCAAGGACATGACTGCTCAgtaagagatgcttccctgtcctggagtggcatgattttctgcacagcctc Alignment from Exonerate_protein2genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTG-GGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gatgacaatgttctgtagggtgcatggacttttctgctttcgcccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGCGGCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCATCTCTGTAGGACCCAAGGACATGACTGCTCAgtaagagatgcttccctgtcctggagtggcatgattttctgcacagcctc Alignment from Exonerate_coding2genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTG-GGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gatgacaatgttctgtagggtgcatggacttttctgctttcgcccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGCGGCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCATCTCTGTAGGACCCAAGGACATGACTGCTCAgtaagagatgcttccctgtcctggagtggcatgattttctgcacagcctc Alignment from GeneWise ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTG-GTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA gatgacaatgttctgtagggtgcatggacttttctgctttcgcccctcagATCTGTAACTATGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGCGGCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCATCTCTGTAGGACCCAAGGACATGACTGCTCAgtaagagatgcttccctgtcctggagtggcatgattttctgcacagcctc #### Nfkb2_ID9830_8 --> 2 - 1 Original Alignment agTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGAC-AAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAg cgcctgtaagtcattcaatgtgtcccttaatgtttgtttttgttctgcagaaTCTCCAGGGGCCTTGAACCTGAAGATCTCCCAGATGGACCAAAACAGCAGGTTCAGTGCATGGGGGAGATGAAGTTTATTTGCTCTGTGAGAGGGTGCAAAGAggtaatgcaccctggggcaggctgtagtggtagtaatctggaaatcacttc Alignment from CESAR agTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGAC-AAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAg cgcctgtaagtcattcaatgtgtcccttaatgtttgtttttgttctgcagaaTCTCCAGGGGCCTTGAACCTGAAGATCTCCCAGATGGACCAAAACAGCAGGTTCAGTGCATGGGGGAGATGAAGTTTATTTGCTCTGTGAGAGGGTGCAAAGAggtaatgcaccctggggcaggctgtagtggtagtaatctggaaatcacttc Alignment from Spaln_aa2Genome AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGAC-AAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG cgcctgtaagtcattcaatgtgtcccttaatgtttgtttttgttctgcagAATCTCCAGGGGCCTTGAACCTGAAGATCTCCCAGATGGACcAAAACAGCAGGTTCAGTGCATGGGGGAGATGAAGTTTATTTGCTCTGTGAGAGGGTGCAAAGAGgtaatgcaccctggggcaggctgtagtggtagtaatctggaaatcacttc Alignment from Spaln_nt2Genome AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGAC-AAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG cgcctgtaagtcattcaatgtgtcccttaatgtttgtttttgttctgcagAATCTCCAGGGGCCTTGAACCTGAAGATCTCCCAGATGGACCAAAACAGCAGGTTCAGTGCATGGGGGAGATGAAGTTTATTTGCTCTGTGAGAGGGTGCAAAGAGgtaatgcaccctggggcaggctgtagtggtagtaatctggaaatcacttc Alignment from Pairagon AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGA-CAAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG cgcctgtaagtcattcaatgtgtcccttaatgtttgtttttgttctgcagAATCTCCAGGGGCCTTGAACCTGAAGATCTCCCAGATGGACCAAAACAGCAGGTTCAGTGCATGGGGGAGATGAAGTTTATTTGCTCTGTGAGAGGGTGCAAAGAGgtaatgcaccctggggcaggctgtagtggtagtaatctggaaatcacttc Alignment from Exonerate_protein2genome AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGAC-AAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG cgcctgtaagtcattcaatgtgtcccttaatgtttgtttttgttctgcagAATCTCCAGGGGCCTTGAACCTGAAGATCTCCCAGATGGACCAAAACAGCAGGTTCAGTGCATGGGGGAGATGAAGTTTATTTGCTCTGTGAGAGGGTGCAAAGAGgtaatgcaccctggggcaggctgtagtggtagtaatctggaaatcacttc Alignment from Exonerate_coding2genome AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGAC-AAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG cgcctgtaagtcattcaatgtgtcccttaatgtttgtttttgttctgcagAATCTCCAGGGGCCTTGAACCTGAAGATCTCCCAGATGGACCAAAACAGCAGGTTCAGTGCATGGGGGAGATGAAGTTTATTTGCTCTGTGAGAGGGTGCAAAGAGgtaatgcaccctggggcaggctgtagtggtagtaatctggaaatcacttc Alignment from GeneWise AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGAC-AAGACAGCGGGTTCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG cgcctgtaagtcattcaatgtgtcccttaatgtttgtttttgttctgcagAATCTCCAGGGGCCTTGAACCTGAAGATCTCCCAGATGGACCAAAACAGCAGGTTCAGTGCATGGGGGAGATGAAGTTTATTTGCTCTGTGAGAGGGTGCAAAGAGgtaatgcaccctggggcaggctgtagtggtagtaatctggaaatcacttc #### Nfkb2_ID9834_12 --> 2 - 1 Original Alignment gtGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGC-GAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAg tttgggagagtcctggatggcaatctagcctgtgtctcttttcaacataggtGGCAGCCTTGGCTTTTTATCCTCCTCATTGGCCTATAACCCCTACCAATCTGGTGCATCCCCAATGGGCTATTATCTGGGTGGGGGGGGTGGAACGCAGATGGCTGGTTCTAGACGGGATACTGATGCTGGTCGAGGGGGCAGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACACTGCATCGAggtaagagtcaggcttgagggttagcatgcaccctaactttttattttttt Alignment from CESAR gtGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGC-GAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAg tttgggagagtcctggatggcaatctagcctgtgtctcttttcaacataggtGGCAGCCTTGGCTTTTTATCCTCCTCATTGGCCTATAACCCCTACCAATCTGGTGCATCCCCAATGGGCTATTATCTGGGTGGGGGGGGTGGAACGCAGATGGCTGGTTCTAGACGGGATACTGATGCTGGTCGAGGGGGCAGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACACTGCATCGAggtaagagtcaggcttgagggttagcatgcaccaagatgaatgctctctcc Alignment from Spaln_aa2Genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGC-GAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tttgggagagtcctggatggcaatctagcctgtgtctcttttcaacatagGTGGCAGCCTTGGCTTTTTATCCTCCTCATTGGCCTATAACCCCTACCAATCTGGTGCATCCCCAATGGGCTATTATCTGGGTGGGGGGGGTGGAACGCAGATGGCTGGTTCTAGACGGGATACTGATGCTGGTcGAGGGGGCAGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACACTGCATCGAGgtaagagtcaggcttgagggttagcatgcaccctaactttttattttttt Alignment from Spaln_nt2Genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGG-CGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tttgggagagtcctggatggcaatctagcctgtgtctcttttcaacatagGTGGCAGCCTTGGCTTTTTATCCTCCTCATTGGCCTATAACCCCTACCAATCTGGTGCATCCCCAATGGGCTATTATCTGGGTGGGGGGGGTGGAACGCAGATGGCTGGTTCTAGACGGGATACTGATGCTGGTCGAGGGGGCAGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACACTGCATCGAGgtaagagtcaggcttgagggttagcatgcaccctaactttttattttttt Alignment from Pairagon GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGG-CGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tttgggagagtcctggatggcaatctagcctgtgtctcttttcaacatagGTGGCAGCCTTGGCTTTTTATCCTCCTCATTGGCCTATAACCCCTACCAATCTGGTGCATCCCCAATGGGCTATTATCTGGGTGGGGGGGGTGGAACGCAGATGGCTGGTTCTAGACGGGATACTGATGCTGGTCGAGGGGGCAGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACACTGCATCGAGgtaagagtcaggcttgagggttagcatgcaccctaactttttattttttt Alignment from Exonerate_protein2genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGC-GAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tttgggagagtcctggatggcaatctagcctgtgtctcttttcaacatagGTGGCAGCCTTGGCTTTTTATCCTCCTCATTGGCCTATAACCCCTACCAATCTGGTGCATCCCCAATGGGCTATTATCTGGGTGGGGGGGGTGGAACGCAGATGGCTGGTTCTAGACGGGATACTGATGCTGGTCGAGGGGGCAGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACACTGCATCGAGgtaagagtcaggcttgagggttagcatgcaccctaactttttattttttt Alignment from Exonerate_coding2genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGC-GAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tttgggagagtcctggatggcaatctagcctgtgtctcttttcaacatagGTGGCAGCCTTGGCTTTTTATCCTCCTCATTGGCCTATAACCCCTACCAATCTGGTGCATCCCCAATGGGCTATTATCTGGGTGGGGGGGGTGGAACGCAGATGGCTGGTTCTAGACGGGATACTGATGCTGGTCGAGGGGGCAGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACACTGCATCGAGgtaagagtcaggcttgagggttagcatgcaccctaactttttattttttt Alignment from GeneWise GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGC-GAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tttgggagagtcctggatggcaatctagcctgtgtctcttttcaacatagGTGGCAGCCTTGGCTTTTTATCCTCCTCATTGGCCTATAACCCCTACCAATCTGGTGCATCCCCAATGGGCTATTATCTGGGTGGGGGGGGTGGAACGCAGATGGCTGGTTCTAGACGGGATACTGATGCTGGTCGAGGGGGCAGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACACTGCATCGAGgtaagagtcaggcttgagggttagcatgcaccctaactttttattttttt #### Nfkb2_ID9835_13 --> 2 - 2 Original Alignment ctCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTG-ATGGCACAGGACGAGAACGGAGACac ctgtcaggcttgagggttagcatgcaccaagatgaatgctctctccacagccCGTGAATACAATGCACGCCTGTTTGGTCTGGCGCAGCGCAGTGCCCGAGTGTTGCTGGACTATGGTGTCACTGCAGATGCACGTGCTCTGCTAGCGGGACAGCGTCACCTGCTGCATGGCACAGGACGAGAATGGAGACacgtgagccccagagtatgggctaccatgagatctccagggtgtggggtttc Alignment from CESAR ctCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTG-ATGGCACAGGACGAGAACGGAGACac gagtcaggcttgagggttagcatgcaccaagatgaatgctctctccacagccCGTGAATACAATGCACGCCTGTTTGGTCTGGCGCAGCGCAGTGCCCGAGTGTTGCTGGACTATGGTGTCACTGCAGATGCACGTGCTCTGCTAGCGGGACAGCGTCACCTGCTGCATGGCACAGGACGAGAATGGAGACacgtgagccccagagtatgggctaccatgagatctccagggtgtggggtttc Alignment from Spaln_aa2Genome CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTG-ATGGCACAGGACGAGAACGGAGACAC ctgtcaggcttgagggttagcatgcaccaagatgaatgctctctccacagCCCGTGAATACAATGCACGCCTGTTTGGTCTGGCGCAGCGCAGTGCCCGAGTGTTGCTGGACTATGGTGTCACTGCAGATGCACGTGCTCTGCTAGCGGGACAGCGTCACCTGCTGcATGGCACAGGACGAGAATGGAGACACgtgagccccagagtatgggctaccatgagatctccagggtgtggggtttc Alignment from Spaln_nt2Genome CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTG-ATGGCACAGGACGAGAACGGAGACAC ctgtcaggcttgagggttagcatgcaccaagatgaatgctctctccacagCCCGTGAATACAATGCACGCCTGTTTGGTCTGGCGCAGCGCAGTGCCCGAGTGTTGCTGGACTATGGTGTCACTGCAGATGCACGTGCTCTGCTAGCGGGACAGCGTCACCTGCTGCATGGCACAGGACGAGAATGGAGACACgtgagccccagagtatgggctaccatgagatctccagggtgtggggtttc Alignment from Pairagon CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTG-ATGGCACAGGACGAGAACGGAGACAC ctgtcaggcttgagggttagcatgcaccaagatgaatgctctctccacagCCCGTGAATACAATGCACGCCTGTTTGGTCTGGCGCAGCGCAGTGCCCGAGTGTTGCTGGACTATGGTGTCACTGCAGATGCACGTGCTCTGCTAGCGGGACAGCGTCACCTGCTGCATGGCACAGGACGAGAATGGAGACACgtgagccccagagtatgggctaccatgagatctccagggtgtggggtttc Alignment from Exonerate_protein2genome CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTG-ATGGCACAGGACGAGAACGGAGACAC ctgtcaggcttgagggttagcatgcaccaagatgaatgctctctccacagCCCGTGAATACAATGCACGCCTGTTTGGTCTGGCGCAGCGCAGTGCCCGAGTGTTGCTGGACTATGGTGTCACTGCAGATGCACGTGCTCTGCTAGCGGGACAGCGTCACCTGCTGCATGGCACAGGACGAGAATGGAGACACgtgagccccagagtatgggctaccatgagatctccagggtgtggggtttc Alignment from Exonerate_coding2genome CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTG-ATGGCACAGGACGAGAACGGAGACAC ctgtcaggcttgagggttagcatgcaccaagatgaatgctctctccacagCCCGTGAATACAATGCACGCCTGTTTGGTCTGGCGCAGCGCAGTGCCCGAGTGTTGCTGGACTATGGTGTCACTGCAGATGCACGTGCTCTGCTAGCGGGACAGCGTCACCTGCTGCATGGCACAGGACGAGAATGGAGACACgtgagccccagagtatgggctaccatgagatctccagggtgtggggtttc Alignment from GeneWise CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACCGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTG-CTGATGGCACAGGACGAGAACGGAGACAC ctgtcaggcttgagggttagcatgcaccaagatgaatgctctctccacagCCCGTGAATACAATGCACGCCTGTTTGGTCTGGCGCAGCGCAGTGCCCGAGTGTTGCTGGACTATGGTGTCACTGCAGATGCACGTGCTCTGCTAGCGGGACAGCGTCACCTGCTGCATGGCACAGGACGAGAATGGAGACACgtgagccccagagtatgggctaccatgagatctccagggtgtggggtttc #### Nfkb2_ID9840_18 --> 2 - 0 Original Alignment gtGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCT-GGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cgatttaggaaccttcactagtctttttgaaaagtgtcttttatgtataggtGCCGATATCCATACAGAGAATGAGGAACCTCTGTGTCCACTGCCTTCACCCTCAACCTCTCGGGAGTGACTCCGACTCTGAGGGGCCTGAAAGAGATACTCAAAGAACCTTCCGAGGGCATACCCCTCTTGATCTCACTTGCAGTACCAAGgtatgaccacccttggagaagatgggctgagggacatgggatctgctgca Alignment from CESAR gtGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCT-GGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cgatttaggaaccttcactagtctttttgaaaagtgtcttttatgtataggtGCCGATATCCATACAGAGAATGAGGAACCTCTGTGTCCACTGCCTTCACCCTCAACCTCTCGGGAGTGACTCCGACTCTGAGGGGCCTGAAAGAGATACTCAAAGAACCTTCCGAGGGCATACCCCTCTTGATCTCACTTGCAGTACCAAGgtatgaccacccttggagaagatgggctgagggacatgggatctgctgca Alignment from Spaln_aa2Genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCT-GGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cgatttaggaaccttcactagtctttttgaaaagtgtcttttatgtatagGTGCCGATATCCATACAGAGAATGAGGAACCTCTGTGTCCACTGCCTTCACCCTCAACCTCTcGGGAGTGACTCCGACTCTGAGGGGCCTGAAAGAGATACTCAAAGAACCTTCCGAGGGCATACCCCTCTTGATCTCACTTGCAGTACCAAGgtatgaccacccttggagaagatgggctgagggacatgggatctgctgca Alignment from Spaln_nt2Genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCT-GGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cgatttaggaaccttcactagtctttttgaaaagtgtcttttatgtatagGTGCCGATATCCATACAGAGAATGAGGAACCTCTGTGTCCACTGCCTTCACCCTCAACCTCTCGGGAGTGACTCCGACTCTGAGGGGCCTGAAAGAGATACTCAAAGAACCTTCCGAGGGCATACCCCTCTTGATCTCACTTGCAGTACCAAGgtatgaccacccttggagaagatgggctgagggacatgggatctgctgca Alignment from Pairagon GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCT-GGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cgatttaggaaccttcactagtctttttgaaaagtgtcttttatgtatagGTGCCGATATCCATACAGAGAATGAGGAACCTCTGTGTCCACTGCCTTCACCCTCAACCTCTCGGGAGTGACTCCGACTCTGAGGGGCCTGAAAGAGATACTCAAAGAACCTTCCGAGGGCATACCCCTCTTGATCTCACTTGCAGTACCAAGgtatgaccacccttggagaagatgggctgagggacatgggatctgctgca Alignment from Exonerate_protein2genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCT-GGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cgatttaggaaccttcactagtctttttgaaaagtgtcttttatgtatagGTGCCGATATCCATACAGAGAATGAGGAACCTCTGTGTCCACTGCCTTCACCCTCAACCTCTCGGGAGTGACTCCGACTCTGAGGGGCCTGAAAGAGATACTCAAAGAACCTTCCGAGGGCATACCCCTCTTGATCTCACTTGCAGTACCAAGgtatgaccacccttggagaagatgggctgagggacatgggatctgctgca Alignment from Exonerate_coding2genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCT-GGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cgatttaggaaccttcactagtctttttgaaaagtgtcttttatgtatagGTGCCGATATCCATACAGAGAATGAGGAACCTCTGTGTCCACTGCCTTCACCCTCAACCTCTCGGGAGTGACTCCGACTCTGAGGGGCCTGAAAGAGATACTCAAAGAACCTTCCGAGGGCATACCCCTCTTGATCTCACTTGCAGTACCAAGgtatgaccacccttggagaagatgggctgagggacatgggatctgctgca Alignment from GeneWise GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACC-TCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cgatttaggaaccttcactagtctttttgaaaagtgtcttttatgtatagGTGCCGATATCCATACAGAGAATGAGGAACCTCTGTGTCCACTGCCTTCACCCTCAACCTCTCGGGAGTGACTCCGACTCTGAGGGGCCTGAAAGAGATACTCAAAGAACCTTCCGAGGGCATACCCCTCTTGATCTCACTTGCAGTACCAAGgtatgaccacccttggagaagatgggctgagggacatgggatctgctgca #### Nfkb2_ID9841_19 --> 0 - 1 Original Alignment GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCC-CTGGCCCCACCCAGCCCTGCAg cagggaaagataggcttaaggtctgatgttaattgtaatgtccaacacagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCACAGAGCCACCCCCTGGCCCCACCCACCCCCGTAggtacagttgcagtggtctctggcacctcaatcaagaggtgatatccttag Alignment from CESAR GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCC-CTGGCCCCACCCAGCCCTGCAg cagggaaagataggcttaaggtctgatgttaattgtaatgtccaacacagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCACAGAGCCACCCCCTGGCCCCACCCACCCCCGTAggtacagttgcagtggtctctggcacctcaatcaagaggtgatatccttag Alignment from Spaln_aa2Genome GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCT- cagggaaagataggcttaaggtctgatgttaattgtaatgtccaacacagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCACAGAGCCACCCCCTGGCCCCACCCACCCCCgtaggtacagttgcagtggtctctggcacctcaatcaagaggtgatatccttag Alignment from Spaln_nt2Genome GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCC-TGGCCCCACCCAGCCCTGCAG cagggaaagataggcttaaggtctgatgttaattgtaatgtccaacacagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCACAGAGCCACCCCCTGGCCCCACCCACCCCCGTAGgtacagttgcagtggtctctggcacctcaatcaagaggtgatatccttag Alignment from Pairagon GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCA-CCCCTGGCCCCACCCAGCCCTGCAG cagggaaagataggcttaaggtctgatgttaattgtaatgtccaacacagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCACAGAGCCACCCCCTGGCCCCACCCACCCCCGTAGgtacagttgcagtggtctctggcacctcaatcaagaggtgatatccttag Alignment from Exonerate_protein2genome GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCA-CCCCTGGCCCCACCCAGCCCTGCAG cagggaaagataggcttaaggtctgatgttaattgtaatgtccaacacagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCACAGAGCCACCCCCTGGCCCCACCCACCCCCGTAGgtacagttgcagtggtctctggcacctcaatcaagaggtgatatccttag Alignment from Exonerate_coding2genome GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCA-CCCCTGGCCCCACCCAGCCCTGCAG cagggaaagataggcttaaggtctgatgttaattgtaatgtccaacacagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCACAGAGCCACCCCCTGGCCCCACCCACCCCCGTAGgtacagttgcagtggtctctggcacctcaatcaagaggtgatatccttag Alignment from GeneWise GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTG cagggaaagataggcttaaggtctgatgttaattgtaatgtccaacacagGTGAAGACCCTGCTGCTAAATGCCGCTCAGAACACCACAGAGCCACCCCCTGGCCCCACCCACCCCCgtaggtacagttgcagtggtctctggcacctcaatcaagaggtgatatccttag #### Nfkb2_ID9843_21 --> 0 - 1 Original Alignment AG CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTG-CTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAg AGgtaagtcagctggaccctatgctgaatcccatgaccatctgatttcagCTAGCTGGTGGGGACTTGGTGGGTCTGTTGGAGGCCTTGTCTGACATGGGTCTTCATGAGGGAGTCAGGCTTCCTGAAAGGTCCTGAGACCCGTGACAAGCTGCCAAGCACAggtaagcacaagcaccctggagggtgtgtctgagcttagaggagacagtaa Alignment from CESAR AG CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTG-CTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAg AGgtaagacagctggaccctatgctgaatcccatgaccatctgatttcagCTAGCTGGTGGGGACTTGGTGGGTCTGTTGGAGGCCTTGTCTGACATGGGTCTTCATGAGGGAGTCAGGCTTCCTGAAAGGTCCTGAGACCCGTGACAAGCTGCCAAGCACAggtaagcacaagcaccctggagggtgtgtctgagcttagaggagacagtaa Alignment from Spaln_aa2Genome AG CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTG-CTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG AGgtaagtcagctggaccctatgctgaatcccatgaccatctgatttcagCTAGCTGGTGGGGACTTGGTGGGTCTGTTGGAGGCCTTGTCTGACATGGGTCTTCATGAGGGAGTCAGGCTTcCTGAAAGGTCCTGAGACCCGTGACAAGCTGCCAAGCACAGgtaagcacaagcaccctggagggtgtgtctgagcttagaggagacagtaa Alignment from Spaln_nt2Genome AG CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTGC-TGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG AGgtaagtcagctggaccctatgctgaatcccatgaccatctgatttcagCTAGCTGGTGGGGACTTGGTGGGTCTGTTGGAGGCCTTGTCTGACATGGGTCTTCATGAGGGAGTCAGGCTTCCTGAAAGGTCCTGAGACCCGTGACAAGCTGCCAAGCACAGgtaagcacaagcaccctggagggtgtgtctgagcttagaggagacagtaa Alignment from Pairagon AG CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGC-TGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG AGgtaagtcagctggaccctatgctgaatcccatgaccatctgatttcagCTAGCTGGTGGGGACTTGGTGGGTCTGTTGGAGGCCTTGTCTGACATGGGTCTTCATGAGGGAGTCAGGCTTCCTGAAAGGTCCTGAGACCCGTGACAAGCTGCCAAGCACAGgtaagcacaagcaccctggagggtgtgtctgagcttagaggagacagtaa Alignment from Exonerate_protein2genome AG CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTG-CTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG AGgtaagtcagctggaccctatgctgaatcccatgaccatctgatttcagCTAGCTGGTGGGGACTTGGTGGGTCTGTTGGAGGCCTTGTCTGACATGGGTCTTCATGAGGGAGTCAGGCTTCCTGAAAGGTCCTGAGACCCGTGACAAGCTGCCAAGCACAGgtaagcacaagcaccctggagggtgtgtctgagcttagaggagacagtaa Alignment from Exonerate_coding2genome AG CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGGCTG-CTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG AGgtaagtcagctggaccctatgctgaatcccatgaccatctgatttcagCTAGCTGGTGGGGACTTGGTGGGTCTGTTGGAGGCCTTGTCTGACATGGGTCTTCATGAGGGAGTCAGGCTTCCTGAAAGGTCCTGAGACCCGTGACAAGCTGCCAAGCACAGgtaagcacaagcaccctggagggtgtgtctgagcttagaggagacagtaa Alignment from GeneWise AG CTGGCTGGTGGGGACTTGGTGGGTCTATTGGAGGCCTTGTCTGACATGGGTCTCCATGAGGGAGTCAGG-CTGCTGAAAGGTCCTGAGACCCGCGACAAGCTGCCCAGCACAG AGgtaagtcagctggaccctatgctgaatcccatgaccatctgatttcagCTAGCTGGTGGGGACTTGGTGGGTCTGTTGGAGGCCTTGTCTGACATGGGTCTTCATGAGGGAGTCAGGCTTCCTGAAAGGTCCTGAGACCCGTGACAAGCTGCCAAGCACAGgtaagcacaagcaccctggagggtgtgtctgagcttagaggagacagtaa #### Npas4_ID775_6 --> 2 - 2 Original Alignment tgGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTAC-TGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCag gtgggtggcctgatagaccttgagatgtcttggggtcttctcattcccagtgGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGCTTCAGGCCAAGCATGGAGGCTGGACATGGATTTATCTGCATGTTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATaggtgagttggaaggcataagatggtgacaacagctgagtttagcataggac Alignment from CESAR tgGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTAC-TGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCag gtgggtggcctgatagaccttgagatgtcttggggtcttctcattcccagtgGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGCTTCAGGCCAAGCATGGAGGCTGGACATGGATTTATCTGCATGTTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATaggtgagttggaaggcataagatggtgacaacagctgagtttagcataggac Alignment from Spaln_aa2Genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTAC-TGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggcctgatagaccttgagatgtcttggggtcttctcattcccagTGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGCTTCAGGCCAAGCATGGAGGCTGGACATGGATTTATcTGCATGTTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATAGgtgagttggaaggcataagatggtgacaacagctgagtttagcataggac Alignment from Spaln_nt2Genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTA-CTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggcctgatagaccttgagatgtcttggggtcttctcattcccagTGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGCTTCAGGCCAAGCATGGAGGCTGGACATGGATTTATCTGCATGTTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATAGgtgagttggaaggcataagatggtgacaacagctgagtttagcataggac Alignment from Pairagon TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTA-CTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggcctgatagaccttgagatgtcttggggtcttctcattcccagTGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGCTTCAGGCCAAGCATGGAGGCTGGACATGGATTTATCTGCATGTTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATAGgtgagttggaaggcataagatggtgacaacagctgagtttagcataggac Alignment from Exonerate_protein2genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTAC-TGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggcctgatagaccttgagatgtcttggggtcttctcattcccagTGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGCTTCAGGCCAAGCATGGAGGCTGGACATGGATTTATCTGCATGTTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATAGgtgagttggaaggcataagatggtgacaacagctgagtttagcataggac Alignment from Exonerate_coding2genome TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTAC-TGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggcctgatagaccttgagatgtcttggggtcttctcattcccagTGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGCTTCAGGCCAAGCATGGAGGCTGGACATGGATTTATCTGCATGTTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATAGgtgagttggaaggcataagatggtgacaacagctgagtttagcataggac Alignment from GeneWise TGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATT-TACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtgggtggcctgatagaccttgagatgtcttggggtcttctcattcccagTGGCTGAAAGTGGAGATATTCAGGCTGAAATGGTGGTGAGGCTTCAGGCCAAGCATGGAGGCTGGACATGGATTTATCTGCATGTTATACTCAGAGGGGCCAGAAGGGCCTTTTACTGCCAATAACTACCCTAATAGgtgagttggaaggcataagatggtgacaacagctgagtttagcataggac #### Npas4_ID778_3 --> 0 - 1 Original Alignment GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATT-GACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTg ttgtggataccctctgggtaccttcattatacattatatatatatgcaagGTGGACCTAGTGGCACAGGGTGACAGTATCTATGATATTATTCGACCCTACTGACCATCTAACTGTGCGCCAGCAACTCACCATGCCCTCTGCTCTCGATGCCggtaagtgtatcatgcacaaaggttccaaagcatttagatgataagaccat Alignment from CESAR GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATT-GACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTg ttgtggataccctctgggtaccttcattatacattatatatatatgcaagGTGGACCTAGTGGCACAGGGTGACAGTATCTATGATATTATTCGACCCTACTGACCATCTAACTGTGCGCCAGCAACTCACCATGCCCTCTGCTCTCGATGCCggtaagtgtatcatgcacaaaggttccaaagcatttagatgataagaccat Alignment from Spaln_aa2Genome GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATT-GACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG ttgtggataccctctgggtaccttcattatacattatatatatatgcaagGTGGACCTAGTGGCACAGGGTGACAGTATCTATGATATTATTcGACCCTACTGACCATCTAACTGTGCGCCAGCAACTCACCATGCCCTCTGCTCTCGATGCCGgtaagtgtatcatgcacaaaggttccaaagcatttagatgataagaccat Alignment from Spaln_nt2Genome GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATT-GACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG ttgtggataccctctgggtaccttcattatacattatatatatatgcaagGTGGACCTAGTGGCACAGGGTGACAGTATCTATGATATTATTCGACCCTACTGACCATCTAACTGTGCGCCAGCAACTCACCATGCCCTCTGCTCTCGATGCCGgtaagtgtatcatgcacaaaggttccaaagcatttagatgataagaccat Alignment from Pairagon GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATT-GACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG ttgtggataccctctgggtaccttcattatacattatatatatatgcaagGTGGACCTAGTGGCACAGGGTGACAGTATCTATGATATTATTCGACCCTACTGACCATCTAACTGTGCGCCAGCAACTCACCATGCCCTCTGCTCTCGATGCCGgtaagtgtatcatgcacaaaggttccaaagcatttagatgataagaccat Alignment from Exonerate_protein2genome GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATT-GACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG ttgtggataccctctgggtaccttcattatacattatatatatatgcaagGTGGACCTAGTGGCACAGGGTGACAGTATCTATGATATTATTCGACCCTACTGACCATCTAACTGTGCGCCAGCAACTCACCATGCCCTCTGCTCTCGATGCCGgtaagtgtatcatgcacaaaggttccaaagcatttagatgataagaccat Alignment from Exonerate_coding2genome GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATCATT-GACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG ttgtggataccctctgggtaccttcattatacattatatatatatgcaagGTGGACCTAGTGGCACAGGGTGACAGTATCTATGATATTATTCGACCCTACTGACCATCTAACTGTGCGCCAGCAACTCACCATGCCCTCTGCTCTCGATGCCGgtaagtgtatcatgcacaaaggttccaaagcatttagatgataagaccat Alignment from GeneWise GTGGACCTGGTTGCCCAGGGCGACAGTATCTACGATATC-ATTGACCCTGCTGACCATCTCACTGTGCGCCAGCAGCTCACCATGCCCTCTGCTCTGGATGCTG ttgtggataccctctgggtaccttcattatacattatatatatatgcaagGTGGACCTAGTGGCACAGGGTGACAGTATCTATGATATTATTCGACCCTACTGACCATCTAACTGTGCGCCAGCAACTCACCATGCCCTCTGCTCTCGATGCCGgtaagtgtatcatgcacaaaggttccaaagcatttagatgataagaccat #### Npm3_ID9577_3 --> 0 - 0 Original Alignment CTGTGCCTTACCGAGGGGGCCACGGACGAG-TGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tcgtgtcagccaaccatcacctgaggcatacccactgatctctcctgcagCTCTGCCTTACTGAGGCAGCCACAGACGAGCTGTAATGTGGTAGAAGTTGTGGCCCGGGATTATGATAATCAGGAAATTGCAGTTCCTGTTGCAAACCTCAGGTTGTCTTGTCAGCCGATGgtaaacttgagccattcattcccgttgaatcctagcaggattgataattt Alignment from CESAR CTGTGCCTTACCGAGGGGGCCACGGACGAG-TGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tcgtgtcagccaaccatcacctgaggcatacccactgatctctcctgcagCTCTGCCTTACTGAGGCAGCCACAGACGAGCTGTAATGTGGTAGAAGTTGTGGCCCGGGATTATGATAATCAGGAAATTGCAGTTCCTGTTGCAAACCTCAGGTTGTCTTGTCAGCCGATGgtaaacttgagccattcattcccgttgaatcctagcaggattgataattt Alignment from Spaln_aa2Genome CTGTGCCTTACCGAGGGGGCCACGGACGAG-TGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tcgtgtcagccaaccatcacctgaggcatacccactgatctctcctgcagCTCTGCCTTACTGAGGCAGCCACAGACGAGcTGTAATGTGGTAGAAGTTGTGGCCCGGGATTATGATAATCAGGAAATTGCAGTTCCTGTTGCAAACCTCAGGTTGTCTTGTCAGCCGATGgtaaacttgagccattcattcccgttgaatcctagcaggattgataattt Alignment from Spaln_nt2Genome CTGTGCCTTACCGAGGGGGCCACGGACGAG-TGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tcgtgtcagccaaccatcacctgaggcatacccactgatctctcctgcagCTCTGCCTTACTGAGGCAGCCACAGACGAGCTGTAATGTGGTAGAAGTTGTGGCCCGGGATTATGATAATCAGGAAATTGCAGTTCCTGTTGCAAACCTCAGGTTGTCTTGTCAGCCGATGgtaaacttgagccattcattcccgttgaatcctagcaggattgataattt Alignment from Pairagon CTGTGCCTTACCGAGGGGGCCACGGACGAG-TGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tcgtgtcagccaaccatcacctgaggcatacccactgatctctcctgcagCTCTGCCTTACTGAGGCAGCCACAGACGAGCTGTAATGTGGTAGAAGTTGTGGCCCGGGATTATGATAATCAGGAAATTGCAGTTCCTGTTGCAAACCTCAGGTTGTCTTGTCAGCCGATGgtaaacttgagccattcattcccgttgaatcctagcaggattgataattt Alignment from Exonerate_protein2genome CTGTGCCTTACCGAGGGGGCCACGGACGAG-TGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tcgtgtcagccaaccatcacctgaggcatacccactgatctctcctgcagCTCTGCCTTACTGAGGCAGCCACAGACGAGCTGTAATGTGGTAGAAGTTGTGGCCCGGGATTATGATAATCAGGAAATTGCAGTTCCTGTTGCAAACCTCAGGTTGTCTTGTCAGCCGATGgtaaacttgagccattcattcccgttgaatcctagcaggattgataattt Alignment from Exonerate_coding2genome CTGTGCCTTACCGAGGGGGCCACGGACGAG-TGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tcgtgtcagccaaccatcacctgaggcatacccactgatctctcctgcagCTCTGCCTTACTGAGGCAGCCACAGACGAGCTGTAATGTGGTAGAAGTTGTGGCCCGGGATTATGATAATCAGGAAATTGCAGTTCCTGTTGCAAACCTCAGGTTGTCTTGTCAGCCGATGgtaaacttgagccattcattcccgttgaatcctagcaggattgataattt Alignment from GeneWise GCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tcgtgtcagccaaccatcacctgaggcatacccactgatctctcctgcagctctgccttactgaggcagCCACAGACGAGCTGTAATGTGGTAGAAGTTGTGGCCCGGGATTATGATAATCAGGAAATTGCAGTTCCTGTTGCAAACCTCAGGTTGTCTTGTCAGCCGATGgtaaacttgagccattcattcccgttgaatcctagcaggattgataattt #### Npm3_ID9578_2 --> 2 - 0 Original Alignment gtTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACG-GAGCACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggatcatctggtttgcttttacagggTGTGAGCTCTCTGATCACACACGCTCCTTCACTTTCAAGGTTGAAGAGGAAGATGACACACGAGCAGGTGCTGGCATTGAACATGgtaagagtcacagagggagttcgagatctggaacacctgtggtacctctc Alignment from CESAR gtTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACG-GAGCACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggatcatctggtttgcttttacagggTGTGAGCTCTCTGATCACACACGCTCCTTCACTTTCAAGGTTGAAGAGGAAGATGACACACGAGCAGGTGCTGGCATTGAACATGgtaagagtcacagagggagttcgagatctggaacacctgtggtacctctc Alignment from Spaln_aa2Genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACG-GAGCACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggatcatctggtttgcttttacagGGTGTGAGCTCTCTGATCACACACGCTCCTTCACTTTCAAGGTTGAAGAGGAAGATGACACAcGAGCAGGTGCTGGCATTGAACATGgtaagagtcacagagggagttcgagatctggaacacctgtggtacctctc Alignment from Spaln_nt2Genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACG-GAGCACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggatcatctggtttgcttttacagGGTGTGAGCTCTCTGATCACACACGCTCCTTCACTTTCAAGGTTGAAGAGGAAGATGACACACGAGCAGGTGCTGGCATTGAACATGgtaagagtcacagagggagttcgagatctggaacacctgtggtacctctc Alignment from Pairagon GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACG-GAGCACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggatcatctggtttgcttttacagGGTGTGAGCTCTCTGATCACACACGCTCCTTCACTTTCAAGGTTGAAGAGGAAGATGACACACGAGCAGGTGCTGGCATTGAACATGgtaagagtcacagagggagttcgagatctggaacacctgtggtacctctc Alignment from Exonerate_protein2genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACG-GAGCACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggatcatctggtttgcttttacagGGTGTGAGCTCTCTGATCACACACGCTCCTTCACTTTCAAGGTTGAAGAGGAAGATGACACACGAGCAGGTGCTGGCATTGAACATGgtaagagtcacagagggagttcgagatctggaacacctgtggtacctctc Alignment from Exonerate_coding2genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACG-GAGCACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggatcatctggtttgcttttacagGGTGTGAGCTCTCTGATCACACACGCTCCTTCACTTTCAAGGTTGAAGAGGAAGATGACACACGAGCAGGTGCTGGCATTGAACATGgtaagagtcacagagggagttcgagatctggaacacctgtggtacctctc Alignment from GeneWise GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAG-CACGTGCTGGCGTTGAACATG cactttccccttcacatgtgtacctaggatcatctggtttgcttttacagGGTGTGAGCTCTCTGATCACACACGCTCCTTCACTTTCAAGGTTGAAGAGGAAGATGACACACGAGCAGGTGCTGGCATTGAACATGgtaagagtcacagagggagttcgagatctggaacacctgtggtacctctc #### Nt5c2_ID10040_13 --> 0 - 1 Original Alignment AAAACTGGAAAACTGAAAATTGGC-ACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGg tgtctgggagtgggttcaaatgaatttcgatccttctgctttttcaacagAAAACTGGAAAACTGAAGATTGGCCTCCTACACAGGCCCCCTGCAGCAC---GTTGTCTATTCAGGGggtaaccgggctgcctggctgcctccttttcttttggatgactctgtatgg Alignment from CESAR AAAACTGGAAAACTGAAAATTGGC-ACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGg tgtctgggagtgggttcaaatgaatttcgatccttctgctttttcaacagAAAACTGGAAAACTGAAGATTGGCCTCCTACACAGGCCCCCTGCAGCAC---GTTGTCTATTCAGGGggtaaccgggctgcctggctgcctccttttcttttggatgactctgtatgg Alignment from Spaln_aa2Genome AAAACTGGAAAACTGAAAATTGGC-ACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgtctgggagtgggttcaaatgaatttcgatccttctgctttttcaacagAAAACTGGAAAACTGAAGATTGGCcTCCTACACAGGCCCCCTGCAGCAC---GTTGTCTATTCAGGGGgtaaccgggctgcctggctgcctccttttcttttggatgactctgtatgg Alignment from Spaln_nt2Genome AAAACTGGAAAACTGAAAATTGGCA-CCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgtctgggagtgggttcaaatgaatttcgatccttctgctttttcaacagAAAACTGGAAAACTGAAGATTGGCCTCCTACACAGGCCCCCTGCAGCACG---TTGTCTATTCAGGGGgtaaccgggctgcctggctgcctccttttcttttggatgactctgtatgg Alignment from Pairagon AAAACTGGAAAACTGAAAATTGGCA-CCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgtctgggagtgggttcaaatgaatttcgatccttctgctttttcaacagAAAACTGGAAAACTGAAGATTGGCCTCCTACACAGGCCCCCTGCAGCACG---TTGTCTATTCAGGGGgtaaccgggctgcctggctgcctccttttcttttggatgactctgtatgg Alignment from Exonerate_protein2genome AAAACTGGAAAACTGAAAATTGGC-ACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgtctgggagtgggttcaaatgaatttcgatccttctgctttttcaacagAAAACTGGAAAACTGAAGATTGGCCTCCTACACAGGCCCCCTGCAGCAC---GTTGTCTATTCAGGGGgtaaccgggctgcctggctgcctccttttcttttggatgactctgtatgg Alignment from Exonerate_coding2genome AAAACTGGAAAACTGAAAATTGGC-ACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgtctgggagtgggttcaaatgaatttcgatccttctgctttttcaacagAAAACTGGAAAACTGAAGATTGGCCTCCTACACAGGCCCCCTGCAGCAC---GTTGTCTATTCAGGGGgtaaccgggctgcctggctgcctccttttcttttggatgactctgtatgg Alignment from GeneWise tgtctgggagtgggttcaaatgaatttcgatccttctgctttttcaacagaaaactggaaaactgaagattggcctcctacacaggccccctgcagcacgttgtctattcagggggtaaccgggctgcctggctgcctccttttcttttggatgactctgtatgg #### Nudt8_ID268_3 --> 0 - 0 Original Alignment GAAAAGGCAACC-ATAGTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG aatgattgcccaaggtcacccagactgctctttcttcatttttccttcagGAAAAGGCAATCCATAGTCCCAGTACTTGCCAATGTGGGCCCACTGGATCTACAGAGCCTTAGGCCCAACCTTGAGGAAgtaagtgatgaactttgaagatgggctgccctaacagcggactcatggcc Alignment from CESAR GAAAAGGCA-ACCATAGTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG aatgattgcccaaggtcacccagactgctctttcttcatttttccttcagGAAAAGGCAATCCATAGTCCCAGTACTTGCCAATGTGGGCCCACTGGATCTACAGAGCCTTAGGCCCAACCTTGAGGAAgtaagtgatgaactttgaagatgggctgccctaacagcggactcatggcc Alignment from Spaln_aa2Genome GGCAACCATAGTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG aatgattgcccaaggtcacccagactgctctttcttcatttttccttcaggaaaagGCAATCCATAGTCCCAGTACTTGCCAATGTGGGCCCACTGGATCTACAGAGCCTTAGGCCCAACCTTGAGGAAgtaagtgatgaactttgaagatgggctgccctaacagcggactcatggcc Alignment from Spaln_nt2Genome GAAAAGGCAA-CCATAGTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG aatgattgcccaaggtcacccagactgctctttcttcatttttccttcagGAAAAGGCAATCCATAGTCCCAGTACTTGCCAATGTGGGCCCACTGGATCTACAGAGCCTTAGGCCCAACCTTGAGGAAgtaagtgatgaactttgaagatgggctgccctaacagcggactcatggcc Alignment from Pairagon GAAAAGGCAA-CCATAGTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG aatgattgcccaaggtcacccagactgctctttcttcatttttccttcagGAAAAGGCAATCCATAGTCCCAGTACTTGCCAATGTGGGCCCACTGGATCTACAGAGCCTTAGGCCCAACCTTGAGGAAgtaagtgatgaactttgaagatgggctgccctaacagcggactcatggcc Alignment from Exonerate_protein2genome GGAAAAGGCAACCATAGTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG aatgattgcccaaggtcacccagactgctctttcttcatttttccttcagGAAAAGGCAATCCATAGTCCCAGTACTTGCCAATGTGGGCCCACTGGATCTACAGAGCCTTAGGCCCAACCTTGAGGAAgtaagtgatgaactttgaagatgggctgccctaacagcggactcatggcc Alignment from Exonerate_coding2genome GGAAAAGGCAACCATAGTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG aatgattgcccaaggtcacccagactgctctttcttcatttttccttcagGAAAAGGCAATCCATAGTCCCAGTACTTGCCAATGTGGGCCCACTGGATCTACAGAGCCTTAGGCCCAACCTTGAGGAAgtaagtgatgaactttgaagatgggctgccctaacagcggactcatggcc Alignment from GeneWise GGCAACCATAGTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG aatgattgcccaaggtcacccagactgctctttcttcatttttccttcaggaaaagGCAATCCATAGTCCCAGTACTTGCCAATGTGGGCCCACTGGATCTACAGAGCCTTAGGCCCAACCTTGAGGAAgtaagtgatgaactttgaagatgggctgccctaacagcggactcatggcc #### Nxf1_ID2347_7 --> 0 - 1 Original Alignment CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGAC-CTCAAGGGGCTCCGCTCAGACCCAg ccctcaaccctcatcattgttagctaaaattgttatcttgtttgttgcagCTGATCATGAGCAAACAATATGACGGTAATCAACAAGCACTTGACCCTTAAGGAGCTCCGCTCAGACCCAggtaagccaaacctcaatagttcaaacttattgagggggagaggcaatggg Alignment from CESAR CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGAC-CTCAAGGGGCTCCGCTCAGACCCAg ccctcaaccctcatcattgttagctaaaattgttatcttgtttgttgcagCTGATCATGAGCAAACAATATGACGGTAATCAACAAGCACTTGACCCTTAAGGAGCTCCGCTCAGACCCAggtaagccaaacctcaatagttcaaacttattgagggggagaggcaatggg Alignment from Spaln_aa2Genome CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGAC-CTCAAGGGGCTCCGCTCAGACCCAG ccctcaaccctcatcattgttagctaaaattgttatcttgtttgttgcagCTGATCATGAGCAAACAATATGACGGTAATCAACAAGCACTTGACcCTTAAGGAGCTCCGCTCAGACCCAGgtaagccaaacctcaatagttcaaacttattgagggggagaggcaatggg Alignment from Spaln_nt2Genome CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGACC-TCAAGGGGCTCCGCTCAGACCCAG ccctcaaccctcatcattgttagctaaaattgttatcttgtttgttgcagCTGATCATGAGCAAACAATATGACGGTAATCAACAAGCACTTGACCCTTAAGGAGCTCCGCTCAGACCCAGgtaagccaaacctcaatagttcaaacttattgagggggagaggcaatggg Alignment from Pairagon CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGA-CCTCAAGGGGCTCCGCTCAGACCCAG ccctcaaccctcatcattgttagctaaaattgttatcttgtttgttgcagCTGATCATGAGCAAACAATATGACGGTAATCAACAAGCACTTGACCCTTAAGGAGCTCCGCTCAGACCCAGgtaagccaaacctcaatagttcaaacttattgagggggagaggcaatggg Alignment from Exonerate_protein2genome CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGAC-CTCAAGGGGCTCCGCTCAGACCCAG ccctcaaccctcatcattgttagctaaaattgttatcttgtttgttgcagCTGATCATGAGCAAACAATATGACGGTAATCAACAAGCACTTGACCCTTAAGGAGCTCCGCTCAGACCCAGgtaagccaaacctcaatagttcaaacttattgagggggagaggcaatggg Alignment from Exonerate_coding2genome CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGAC-CTCAAGGGGCTCCGCTCAGACCCAG ccctcaaccctcatcattgttagctaaaattgttatcttgtttgttgcagCTGATCATGAGCAAACAATATGACGGTAATCAACAAGCACTTGACCCTTAAGGAGCTCCGCTCAGACCCAGgtaagccaaacctcaatagttcaaacttattgagggggagaggcaatggg Alignment from GeneWise CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGAC-CTCAAGGGGCTCCGCTCAGACCCAG ccctcaaccctcatcattgttagctaaaattgttatcttgtttgttgcagCTGATCATGAGCAAACAATATGACGGTAATCAACAAGCACTTGACCCTTAAGGAGCTCCGCTCAGACCCAGgtaagccaaacctcaatagttcaaacttattgagggggagaggcaatggg #### Nxf1_ID2349_9 --> 0 - 0 Original Alignment CTATTGTCTTTGAACTTG-AGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA cataaaatgaataggttagaattagataccttctcttctcttctctccagCTATTGTCTTTGAATTTGCAGCAGCAACAGGCTATTCAAGCTGGATGACATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCTTAAATCTTTCTGGAAATGAAgtcagactgacatttagggcactcttcttgttgtagtagttgaccggcta Alignment from CESAR CTATTGTCTTTGAACTTG-AGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA cataaaatgaataggttagaattagataccttctcttctcttctctccagCTATTGTCTTTGAATTTGCAGCAGCAACAGGCTATTCAAGCTGGATGACATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCTTAAATCTTTCTGGAAATGAAgtcagactgacatttagggcactcttcttgttgtagtagttgaccggcta Alignment from Spaln_aa2Genome CTATTGTCTTTGAACTTG-AGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA cataaaatgaataggttagaattagataccttctcttctcttctctccagCTATTGTCTTTGAATTTGcAGCAGCAACAGGCTATTCAAGCTGGATGACATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCTTAAATCTTTCTGGAAATGAAgtcagactgacatttagggcactcttcttgttgtagtagttgaccggcta Alignment from Spaln_nt2Genome CTATTGTCTTTGAACTTG-AGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA cataaaatgaataggttagaattagataccttctcttctcttctctccagCTATTGTCTTTGAATTTGCAGCAGCAACAGGCTATTCAAGCTGGATGACATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCTTAAATCTTTCTGGAAATGAAgtcagactgacatttagggcactcttcttgttgtagtagttgaccggcta Alignment from Pairagon CTATTGTCTTTGAACTTG-AGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA cataaaatgaataggttagaattagataccttctcttctcttctctccagCTATTGTCTTTGAATTTGCAGCAGCAACAGGCTATTCAAGCTGGATGACATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCTTAAATCTTTCTGGAAATGAAgtcagactgacatttagggcactcttcttgttgtagtagttgaccggcta Alignment from Exonerate_protein2genome CTATTGTCTTTGAACTTG-AGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA cataaaatgaataggttagaattagataccttctcttctcttctctccagCTATTGTCTTTGAATTTGCAGCAGCAACAGGCTATTCAAGCTGGATGACATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCTTAAATCTTTCTGGAAATGAAgtcagactgacatttagggcactcttcttgttgtagtagttgaccggcta Alignment from Exonerate_coding2genome CTATTGTCTTTGAACTTG-AGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA cataaaatgaataggttagaattagataccttctcttctcttctctccagCTATTGTCTTTGAATTTGCAGCAGCAACAGGCTATTCAAGCTGGATGACATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCTTAAATCTTTCTGGAAATGAAgtcagactgacatttagggcactcttcttgttgtagtagttgaccggcta Alignment from GeneWise CTATTGTCTTTGAACTTG-AGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA cataaaatgaataggttagaattagataccttctcttctcttctctccagCTATTGTCTTTGAATTTGCAGCAGCAACAGGCTATTCAAGCTGGATGACATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCTTAAATCTTTCTGGAAATGAAgtcagactgacatttagggcactcttcttgttgtagtagttgaccggcta #### Nxf1_ID2353_13 --> 0 - 2 Original Alignment GGAAGCTATTTT-GGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGca gagagaagagaacactggtcctatgattactctcctctcctcccccacagGGAAGTTATTTTCGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGcagtgagtgccccagggcacaatagtcctcaggataatgactggactatgca Alignment from CESAR GGAAGCTATTTT-GGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGca gagagaagagaacactggtcctatgattactctcctctcctcccccacagGGAAGTTATTTTCGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGcagtgagtgccccagggcacaatagtcctcaggataatgactggactatgca Alignment from Spaln_aa2Genome GCTATTTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA gagagaagagaacactggtcctatgattactctcctctcctcccccacagggaagTTATTTTCGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCAgtgagtgccccagggcacaatagtcctcaggataatgactggactatgca Alignment from Spaln_nt2Genome GGAAGCTATTTT-GGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA gagagaagagaacactggtcctatgattactctcctctcctcccccacagGGAAGTTATTTTCGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCAgtgagtgccccagggcacaatagtcctcaggataatgactggactatgca Alignment from Pairagon GGAAGCTATTTT-GGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA gagagaagagaacactggtcctatgattactctcctctcctcccccacagGGAAGTTATTTTCGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCAgtgagtgccccagggcacaatagtcctcaggataatgactggactatgca Alignment from Exonerate_protein2genome GGAAGCTAT-TTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA gagagaagagaacactggtcctatgattactctcctctcctcccccacagGGAAGTTATTTTCGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCAgtgagtgccccagggcacaatagtcctcaggataatgactggactatgca Alignment from Exonerate_coding2genome GGAAGCTAT-TTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA gagagaagagaacactggtcctatgattactctcctctcctcccccacagGGAAGTTATTTTCGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCAgtgagtgccccagggcacaatagtcctcaggataatgactggactatgca Alignment from GeneWise GCTATTTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA gagagaagagaacactggtcctatgattactctcctctcctcccccacagggaagTTATTTTCGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCAgtgagtgccccagggcacaatagtcctcaggataatgactggactatgca #### Nxf1_ID2354_14 --> 1 - 2 Original Alignment gTACTATGTAATTTATGACTCAGGAGACCGCCAGGGT-CTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCcg aatgactggactatgcatatttagtggtcaactgtcaccttttcctgcaggTACTATGTCATTTGTGACTCAGGAGACCGTCAGGGTCCTTCTGTATGCCTACCATGATGGTGCTTGTTGCTCATTAAGCATCCCTTACAACCCTCAGAACCCTGTCaggtctgtgcatatgtttgaccctatctggaacccgtacaacccccagaatc Alignment from CESAR gTACTATGTAATTTATGACTCAGGAGACCGCCAGGGT-CTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCcg aatgactggactatgcatatttagtggtcaactgtcaccttttcctgcaggTACTATGTCATTTGTGACTCAGGAGACCGTCAGGGTCCTTCTGTATGCCTACCATGATGGTGCTTGTTGCTCATTAAGCATCCCTTACAACCCTCAGAACCCTGTCaggtctgtgcatatgtttgaccctatctggaacccgtacaacccccagaatc Alignment from Spaln_aa2Genome GTACTATGTAATTTATGACTCAGGAGACCGCCAGGGT-CTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG aatgactggactatgcatatttagtggtcaactgtcaccttttcctgcagGTACTATGTCATTTGTGACTCAGGAGACCGTCAGGGTcCTTCTGTATGCCTACCATGATGGTGCTTGTTGCTCATTAAGCATCCCTTACAACCCTCAGAACCCTGTCAGgtctgtgcatatgtttgaccctatctggaacccgtacaacccccagaatc Alignment from Spaln_nt2Genome GTACTATGTAATTTATGACTCAGGAGACCGCCAGGGTC-TCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG aatgactggactatgcatatttagtggtcaactgtcaccttttcctgcagGTACTATGTCATTTGTGACTCAGGAGACCGTCAGGGTCCTTCTGTATGCCTACCATGATGGTGCTTGTTGCTCATTAAGCATCCCTTACAACCCTCAGAACCCTGTCAGgtctgtgcatatgtttgaccctatctggaacccgtacaacccccagaatc Alignment from Pairagon GTACTATGTAATTTATGACTCAGGAGACCGCCAGGGT-CTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG aatgactggactatgcatatttagtggtcaactgtcaccttttcctgcagGTACTATGTCATTTGTGACTCAGGAGACCGTCAGGGTCCTTCTGTATGCCTACCATGATGGTGCTTGTTGCTCATTAAGCATCCCTTACAACCCTCAGAACCCTGTCAGgtctgtgcatatgtttgaccctatctggaacccgtacaacccccagaatc Alignment from Exonerate_protein2genome GTACTATGTAATTTATGACTCAGGAGACCGCCAGGGT-CTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG aatgactggactatgcatatttagtggtcaactgtcaccttttcctgcagGTACTATGTCATTTGTGACTCAGGAGACCGTCAGGGTCCTTCTGTATGCCTACCATGATGGTGCTTGTTGCTCATTAAGCATCCCTTACAACCCTCAGAACCCTGTCAGgtctgtgcatatgtttgaccctatctggaacccgtacaacccccagaatc Alignment from Exonerate_coding2genome GTACTATGTAATTTATGACTCAGGAGACCGCCAGGGT-CTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG aatgactggactatgcatatttagtggtcaactgtcaccttttcctgcagGTACTATGTCATTTGTGACTCAGGAGACCGTCAGGGTCCTTCTGTATGCCTACCATGATGGTGCTTGTTGCTCATTAAGCATCCCTTACAACCCTCAGAACCCTGTCAGgtctgtgcatatgtttgaccctatctggaacccgtacaacccccagaatc Alignment from GeneWise GTACTATGTAATTTATGACTCAGGAGACCGCCAGGGT-CTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG aatgactggactatgcatatttagtggtcaactgtcaccttttcctgcagGTACTATGTCATTTGTGACTCAGGAGACCGTCAGGGTCCTTCTGTATGCCTACCATGATGGTGCTTGTTGCTCATTAAGCATCCCTTACAACCCTCAGAACCCTGTCAGgtctgtgcatatgtttgaccctatctggaacccgtacaacccccagaatc #### Nxf1_ID2355_15 --> 1 - 1 Original Alignment aAAAAACTTAGCTGAATATGTCAAAGACAGCAGAAATGTG-AAGAAGCTTAAAGAACCCa gattacaggctactgtttcaactactactagctttgtcttgtggccacagaAAAAACTTAGCTGAATATGTCAAAGACTGTAGAAATGTACAAGAAGCTTAAGGAACCCagtgagtgcattgtgtgagcattccaggtgggaggaaaatagtagagccag Alignment from CESAR aAAAAACTTAGCTGAATATGTCAAAGACAGCAGAAATGTG-AAGAAGCTTAAAGAACCCa gattacaggctactgtttcaactactactagctttgtcttgtggccacagaAAAAACTTAGCTGAATATGTCAAAGACTGTAGAAATGTACAAGAAGCTTAAGGAACCCagtgagtgcattgtgtgagcattccaggtgggaggaaaatagtagagccag Alignment from Spaln_aa2Genome AAAAAACTTAGCTGAATATGTCAAAGACAGCAGAAATGTG-AAGAAGCTTAAAGAACCCA gattacaggctactgtttcaactactactagctttgtcttgtggccacagAAAAAACTTAGCTGAATATGTCAAAGACTGTAGAAATGTAcAAGAAGCTTAAGGAACCCAgtgagtgcattgtgtgagcattccaggtgggaggaaaatagtagagccag Alignment from Spaln_nt2Genome AAAAAACTTAGCTGAATATGTCAAAGACAGCAGAAATGTG-AAGAAGCTTAAAGAACCCA gattacaggctactgtttcaactactactagctttgtcttgtggccacagAAAAAACTTAGCTGAATATGTCAAAGACTGTAGAAATGTACAAGAAGCTTAAGGAACCCAgtgagtgcattgtgtgagcattccaggtgggaggaaaatagtagagccag Alignment from Pairagon AAAAAACTTAGCTGAATATGTCAAAGACAGCAGAAATGTG-AAGAAGCTTAAAGAACCCA gattacaggctactgtttcaactactactagctttgtcttgtggccacagAAAAAACTTAGCTGAATATGTCAAAGACTGTAGAAATGTACAAGAAGCTTAAGGAACCCAgtgagtgcattgtgtgagcattccaggtgggaggaaaatagtagagccag Alignment from Exonerate_protein2genome AAAAAACTTAGCTGAATATGTCAAAGACAGCAGAAATGTG-AAGAAGCTTAAAGAACCCA gattacaggctactgtttcaactactactagctttgtcttgtggccacagAAAAAACTTAGCTGAATATGTCAAAGACTGTAGAAATGTACAAGAAGCTTAAGGAACCCAgtgagtgcattgtgtgagcattccaggtgggaggaaaatagtagagccag Alignment from Exonerate_coding2genome AAAAAACTTAGCTGAATATGTCAAAGACAGCAGAAATGTG-AAGAAGCTTAAAGAACCCA gattacaggctactgtttcaactactactagctttgtcttgtggccacagAAAAAACTTAGCTGAATATGTCAAAGACTGTAGAAATGTACAAGAAGCTTAAGGAACCCAgtgagtgcattgtgtgagcattccaggtgggaggaaaatagtagagccag Alignment from GeneWise AAAAAACTTAGCTGAATATGTCAAAGACAGCAGAAAT-GTGAAGAAGCTTAAAGAACCCA gattacaggctactgtttcaactactactagctttgtcttgtggccacagAAAAAACTTAGCTGAATATGTCAAAGACTGTAGAAATGTACAAGAAGCTTAAGGAACCCAgtgagtgcattgtgtgagcattccaggtgggaggaaaatagtagagccag #### Nxf1_ID2356_16 --> 2 - 0 Original Alignment ccCAGCGGTTCCGACTCTTAAAGCAT-ACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA caaatctagttccaaagcctacatttggccacttactctatctgccccagccCAGCGGTTCCGACTCCTAAAGCATCACACGTCTGAATGTTGTTGCCTTCCTTAATGAGTTACCCAAAACTCAACATGATGTCAATGCCTTTGTGGTAGACATAAGTGCCCAAACAgtgtgtttctgttttatgaaacctagaggtggggtgaatattgagctcag Alignment from CESAR ccCAGCGGTTCCGACTCTTAAAGCAT-ACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA caaatctagttccaaagcctacatttggccacttactctatctgccccagccCAGCGGTTCCGACTCCTAAAGCATCACACGTCTGAATGTTGTTGCCTTCCTTAATGAGTTACCCAAAACTCAACATGATGTCAATGCCTTTGTGGTAGACATAAGTGCCCAAACAgtgtgtttctgttttatgaaacctagaggtggggtgaatattgagctcag Alignment from Spaln_aa2Genome CCCAGCGGTTCCGACTCTTAAAGCAT-ACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA caaatctagttccaaagcctacatttggccacttactctatctgccccagCCCAGCGGTTCCGACTCCTAAAGCATcACACGTCTGAATGTTGTTGCCTTCCTTAATGAGTTACCCAAAACTCAACATGATGTCAATGCCTTTGTGGTAGACATAAGTGCCCAAACAgtgtgtttctgttttatgaaacctagaggtggggtgaatattgagctcag Alignment from Spaln_nt2Genome CCCAGCGGTTCCGACTCTTAAAGCAT-ACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA caaatctagttccaaagcctacatttggccacttactctatctgccccagCCCAGCGGTTCCGACTCCTAAAGCATCACACGTCTGAATGTTGTTGCCTTCCTTAATGAGTTACCCAAAACTCAACATGATGTCAATGCCTTTGTGGTAGACATAAGTGCCCAAACAgtgtgtttctgttttatgaaacctagaggtggggtgaatattgagctcag Alignment from Pairagon CCCAGCGGTTCCGACTCTTAAAGCAT-ACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA caaatctagttccaaagcctacatttggccacttactctatctgccccagCCCAGCGGTTCCGACTCCTAAAGCATCACACGTCTGAATGTTGTTGCCTTCCTTAATGAGTTACCCAAAACTCAACATGATGTCAATGCCTTTGTGGTAGACATAAGTGCCCAAACAgtgtgtttctgttttatgaaacctagaggtggggtgaatattgagctcag Alignment from Exonerate_protein2genome CCCAGCGGTTCCGACTCTTAAAGCAT-ACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACAAGCACATTACTGTGTTTTTCTGTCAATGGAGTC caaatctagttccaaagcctacatttggccacttactctatctgccccagCCCAGCGGTTCCGACTCCTAAAGCATCACACGTCTGAATGTTGTTGCCTTCCTTAATGAGTTACCCAAAACTCAACATGATGTCAATGCCTTTGTGGTAGACATAAGTGCCCAAACAGTGTGTTTCTGTTTTATGAAACCTAGAGGTGGGgtgaatattgagctcag Alignment from Exonerate_coding2genome CCCAGCGGTTCCGACTCTTAAAGCAT-ACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACAAGCACATTACTGTGTTTTTCTGTCAATGGAGTC caaatctagttccaaagcctacatttggccacttactctatctgccccagCCCAGCGGTTCCGACTCCTAAAGCATCACACGTCTGAATGTTGTTGCCTTCCTTAATGAGTTACCCAAAACTCAACATGATGTCAATGCCTTTGTGGTAGACATAAGTGCCCAAACAGTGTGTTTCTGTTTTATGAAACCTAGAGGTGGGgtgaatattgagctcag Alignment from GeneWise CCCAGCGGTTCCGACTCTTAAAGCAT-ACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAACGCCTTCGTGGTAGATATAAGTGCCCAAACA caaatctagttccaaagcctacatttggccacttactctatctgccccagCCCAGCGGTTCCGACTCCTAAAGCATCACACGTCTGAATGTTGTTGCCTTCCTTAATGAGTTACCCAAAACTCAACATGATGTCAATGCCTTTGTGGTAGACATAAGTGCCCAAACAgtgtgtttctgttttatgaaacctagaggtggggtgaatattgagctcag #### Nxf1_ID2357_17 --> 0 - 1 Original Alignment AGCACATTACTGTGTTTTTCTGTCAAT-GGAGTCTTCAAGGAAg gcacaagtaattctaagcctccatagctactaagccgtgttgttttgcagAGTACACTACTGTGTCTATCTCTAAATCGAAGTCCTCAAGGAAtgtaagtaatgttagttctgaacctctgccattatcttagtgtatcttctc Alignment from CESAR AGCACATTACTGTGTTTTTCTGTCAAT-GGAGTCTTCAAGGAAg gcacaagtaattctaagcctccatagctactaagccgtgttgttttgcagAGTACACTACTGTGTCTATCTCTAAATCGAAGTCCTCAAGGAAtgtaagtaatgttagttctgaacctctgccattatcttagtgtatcttctc Alignment from Spaln_aa2Genome AGCACATTACTGTGTTTTTCTGTCAATGGA-GTCTTCAAGGAAG gcacaagtaattctaagcctccatagctactaagccgtgttgttttgcagAGTACACTACTGTGTCTATCTCTAAATCGAaGTCCTCAAGGAATgtaagtaatgttagttctgaacctctgccattatcttagtgtatcttctc Alignment from Spaln_nt2Genome AGCACATTACTGTGTTTTTCTGTCAATGGA-GTCTTCAAGGAAG gcacaagtaattctaagcctccatagctactaagccgtgttgttttgcagAGTACACTACTGTGTCTATCTCTAAATCGAAGTCCTCAAGGAATgtaagtaatgttagttctgaacctctgccattatcttagtgtatcttctc Alignment from Pairagon AGCACATTACTGTGTTTTTCTGTCAAT-GGAGTCTTCAAGGAAG gcacaagtaattctaagcctccatagctactaagccgtgttgttttgcagAGTACACTACTGTGTCTATCTCTAAATCGAAGTCCTCAAGGAATgtaagtaatgttagttctgaacctctgccattatcttagtgtatcttctc Alignment from Exonerate_protein2genome gcacaagtaattctaagcctccatagctactaagccgtgttgttttgcagagtacactactgtgtctatctctaaatcgaagtcctcaaggaatgtaagtaatgttagttctgaacctctgccattatcttagtgtatcttctc Alignment from Exonerate_coding2genome gcacaagtaattctaagcctccatagctactaagccgtgttgttttgcagagtacactactgtgtctatctctaaatcgaagtcctcaaggaatgtaagtaatgttagttctgaacctctgccattatcttagtgtatcttctc Alignment from GeneWise gcacaagtaattctaagcctccatagctactaagccgtgttgttttgcagagtacactactgtgtctatctctaaatcgaagtcctcaaggaatgtaagtaatgttagttctgaacctctgccattatcttagtgtatcttctc #### Nxf1_ID2358_18 --> 2 - 2 Original Alignment tgGATGGGAAGTCTCGAGATTCTTTACGTGCTTTC-ACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAgg tgcagcttaaatgactatatggagctgggtgtcctgtgttccctctgcagtgGATGGGAAGTCTCGAGACTCTTTACATGCTTTTCACAAGGACATTCATTGCTGTTCCTGCCAGCAATACTgggtgagtagttcttattaggttgagtactatcatgaatgtgcttggaaggt Alignment from CESAR tgGATGGGAAGTCTCGAGATTCTTTACGTGCT-TTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAgg tgcagcttaaatgactatatggagctgggtgtcctgtgttccctctgcagtgGATGGGAAGTCTCGAGACTCTTTACATGCTTTTCACAAGGACATTCATTGCTGTTCCTGCCAGCAATACTgggtgagtagttcttattaggttgagtactatcatgaatgtgcttggaaggt Alignment from Spaln_aa2Genome TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTC-ACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG tgcagcttaaatgactatatggagctgggtgtcctgtgttccctctgcagTGGATGGGAAGTCTCGAGACTCTTTACATGCTTTTcACAAGGACATTCATTGCTGTTCCTGCCAGCAATACTGGgtgagtagttcttattaggttgagtactatcatgaatgtgcttggaaggt Alignment from Spaln_nt2Genome TGGATGGGAAGTCTCGAGATTCTTTACGTGC-TTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG tgcagcttaaatgactatatggagctgggtgtcctgtgttccctctgcagTGGATGGGAAGTCTCGAGACTCTTTACATGCTTTTCACAAGGACATTCATTGCTGTTCCTGCCAGCAATACTGGgtgagtagttcttattaggttgagtactatcatgaatgtgcttggaaggt Alignment from Pairagon TGGATGGGAAGTCTCGAGATTCTTTACGTGC-TTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG tgcagcttaaatgactatatggagctgggtgtcctgtgttccctctgcagTGGATGGGAAGTCTCGAGACTCTTTACATGCTTTTCACAAGGACATTCATTGCTGTTCCTGCCAGCAATACTGGgtgagtagttcttattaggttgagtactatcatgaatgtgcttggaaggt Alignment from Exonerate_protein2genome AAGTGGATGGGAAGTCTCGAGATTCTTTACGTGCT-TTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG tgcagcttaaatgactatatggagctgggtgtcctgtgttccctctgCAGTGGATGGGAAGTCTCGAGACTCTTTACATGCTTTTCACAAGGACATTCATTGCTGTTCCTGCCAGCAATACTGGgtgagtagttcttattaggttgagtactatcatgaatgtgcttggaaggt Alignment from Exonerate_coding2genome AAGTGGATGGGAAGTCTCGAGATTCTTTACGTGCT-TTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG tgcagcttaaatgactatatggagctgggtgtcctgtgttccctctgCAGTGGATGGGAAGTCTCGAGACTCTTTACATGCTTTTCACAAGGACATTCATTGCTGTTCCTGCCAGCAATACTGGgtgagtagttcttattaggttgagtactatcatgaatgtgcttggaaggt Alignment from GeneWise CACATTACTGTGTTTTTCTGTCAATGGAGTCTTCAAGGAAGTGGATGGGAAGTCTCGAGATTCTTTACGT-GCTTTCACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG tatatggagCTGGGTGTCCTGT---------------GTTCCCTCTGCAGTGGATGGGAAGTCTCGAGACTCTTTACATGCTTTTCACAAGGACATTCATTGCTGTTCCTGCCAGCAATACTGGgtgagtagttcttattaggttgagtactatcatgaatgtgcttggaaggt #### Pacs1_ID876_18 --> 2 - 2 Original Alignment agCCACTGGACGTGGTGGGT-CGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGtt gggctctctgaggaacataatacttgatctgcgatttttccatcctgcagagCCACTAGACGTGGTGGGTCCGTGTGATGCAGTATGTCAATGGAGCTATCACAACACACCAGCTTCCCGTCGCTGAAGCCATGTTGACCTGCAGGCATAAGttgtgagtctaacatcagtagctttctggcattgggtagaacagagggagtt Alignment from CESAR agCCACTGGACGTGGTGGGT-CGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGtt gggctctctgaggaacataatacttgatctgcgatttttccatcctgcagagCCACTAGACGTGGTGGGTCCGTGTGATGCAGTATGTCAATGGAGCTATCACAACACACCAGCTTCCCGTCGCTGAAGCCATGTTGACCTGCAGGCATAAGttgtgagtctaacatcagtagctttctggcattgggtagaacagagggagtt Alignment from Spaln_aa2Genome AGCCACTGGACGTGGTGGGT-CGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT gggctctctgaggaacataatacttgatctgcgatttttccatcctgcagAGCCACTAGACGTGGTGGGTcCGTGTGATGCAGTATGTCAATGGAGCTATCACAACACACCAGCTTCCCGTCGCTGAAGCCATGTTGACCTGCAGGCATAAGTTgtgagtctaacatcagtagctttctggcattgggtagaacagagggagtt Alignment from Spaln_nt2Genome AGCCACTGGACGTGGT-GGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT gggctctctgaggaacataatacttgatctgcgatttttccatcctgcagAGCCACTAGACGTGGTGGGTCCGTGTGATGCAGTATGTCAATGGAGCTATCACAACACACCAGCTTCCCGTCGCTGAAGCCATGTTGACCTGCAGGCATAAGTTgtgagtctaacatcagtagctttctggcattgggtagaacagagggagtt Alignment from Pairagon AGCCACTGGACGTGGTGGGT-CGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT gggctctctgaggaacataatacttgatctgcgatttttccatcctgcagAGCCACTAGACGTGGTGGGTCCGTGTGATGCAGTATGTCAATGGAGCTATCACAACACACCAGCTTCCCGTCGCTGAAGCCATGTTGACCTGCAGGCATAAGTTgtgagtctaacatcagtagctttctggcattgggtagaacagagggagtt Alignment from Exonerate_protein2genome AGCCACTGGACGTGGTGGGT-CGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT gggctctctgaggaacataatacttgatctgcgatttttccatcctgcagAGCCACTAGACGTGGTGGGTCCGTGTGATGCAGTATGTCAATGGAGCTATCACAACACACCAGCTTCCCGTCGCTGAAGCCATGTTGACCTGCAGGCATAAGTTgtgagtctaacatcagtagctttctggcattgggtagaacagagggagtt Alignment from Exonerate_coding2genome AGCCACTGGACGTGGTGGGT-CGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT gggctctctgaggaacataatacttgatctgcgatttttccatcctgcagAGCCACTAGACGTGGTGGGTCCGTGTGATGCAGTATGTCAATGGAGCTATCACAACACACCAGCTTCCCGTCGCTGAAGCCATGTTGACCTGCAGGCATAAGTTgtgagtctaacatcagtagctttctggcattgggtagaacagagggagtt Alignment from GeneWise AGCCACTGGACGTGGTGGGT-CGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT gggctctctgaggaacataatacttgatctgcgatttttccatcctgcagAGCCACTAGACGTGGTGGGTCCGTGTGATGCAGTATGTCAATGGAGCTATCACAACACACCAGCTTCCCGTCGCTGAAGCCATGTTGACCTGCAGGCATAAGTTgtgagtctaacatcagtagctttctggcattgggtagaacagagggagtt #### Pacs1_ID877_17 --> 2 - 1 Original Alignment gtTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGT-CGCTCAGAGCCTCCAGTGTCAg aagtgctgtagcaaccaatacttcacttctgcccctttgcctcctcacaggtTCTCACCCAGTAGCCAAGTACTTAGGTTCAGTAGATAGTAGATATAGCAGTACCTTTCTGGATTCTGCGTGGAGAGATCTATTCAGCCCGGTCGGAGCCTCTAGTGTCAggtaagaacccccagtaggaaccaccaaccagttaggttctagtccccaat Alignment from CESAR gtTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGT-CGCTCAGAGCCTCCAGTGTCAg aagtgctgtagcaaccaatacttcacttctgcccctttgcctcctcacaggtTCTCACCCAGTAGCCAAGTACTTAGGTTCAGTAGATAGTAGATATAGCAGTACCTTTCTGGATTCTGCGTGGAGAGATCTATTCAGCCCGGTCGGAGCCTCTAGTGTCAggtaagaacccccagtaggaaccaccaaccagttaggttctagtccccaat Alignment from Spaln_aa2Genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGT-CGCTCAGAGCCTCCAGTGTCAG aagtgctgtagcaaccaatacttcacttctgcccctttgcctcctcacagGTTCTCACCCAGTAGCCAAGTACTTAGGTTCAGTAGATAGTAGATATAGCAGTACCTTTCTGGATTCTGCGTGGAGAGATCTATTCAGCcCGGTCGGAGCCTCTAGTGTCAGgtaagaacccccagtaggaaccaccaaccagttaggttctagtccccaat Alignment from Spaln_nt2Genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTC-GCTCAGAGCCTCCAGTGTCAG aagtgctgtagcaaccaatacttcacttctgcccctttgcctcctcacagGTTCTCACCCAGTAGCCAAGTACTTAGGTTCAGTAGATAGTAGATATAGCAGTACCTTTCTGGATTCTGCGTGGAGAGATCTATTCAGCCCGGTCGGAGCCTCTAGTGTCAGgtaagaacccccagtaggaaccaccaaccagttaggttctagtccccaat Alignment from Pairagon GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAG-TCGCTCAGAGCCTCCAGTGTCAG aagtgctgtagcaaccaatacttcacttctgcccctttgcctcctcacagGTTCTCACCCAGTAGCCAAGTACTTAGGTTCAGTAGATAGTAGATATAGCAGTACCTTTCTGGATTCTGCGTGGAGAGATCTATTCAGCCCGGTCGGAGCCTCTAGTGTCAGgtaagaacccccagtaggaaccaccaaccagttaggttctagtccccaat Alignment from Exonerate_protein2genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGT-CGCTCAGAGCCTCCAGTGTCAG aagtgctgtagcaaccaatacttcacttctgcccctttgcctcctcacagGTTCTCACCCAGTAGCCAAGTACTTAGGTTCAGTAGATAGTAGATATAGCAGTACCTTTCTGGATTCTGCGTGGAGAGATCTATTCAGCCCGGTCGGAGCCTCTAGTGTCAGgtaagaacccccagtaggaaccaccaaccagttaggttctagtccccaat Alignment from Exonerate_coding2genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGT-CGCTCAGAGCCTCCAGTGTCAG aagtgctgtagcaaccaatacttcacttctgcccctttgcctcctcacagGTTCTCACCCAGTAGCCAAGTACTTAGGTTCAGTAGATAGTAGATATAGCAGTACCTTTCTGGATTCTGCGTGGAGAGATCTATTCAGCCCGGTCGGAGCCTCTAGTGTCAGgtaagaacccccagtaggaaccaccaaccagttaggttctagtccccaat Alignment from GeneWise GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAGTGTCAG aagtgctgtagcaaccaatacttcacttctgcccctttgcctcctcacagGTTCTCACCCAGTAGCCAAGTACTTAGGTTCAGTAGATAGTAGATATAGCAGTACCTTTCTGGATTCTGCGTGGAGAGATCTATTCAGC------CCGGTCGGAGCCTCTAgtgtcaggtaagaacccccagtaggaaccaccaaccagttaggttctagtccccaat #### Patl1_ID3333_18 --> 1 - 2 Original Alignment gACAGAGGTGATGTTCATGGCA-ACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGca tggtcttcctcccttttccttctatttcactcctgctgtccctttttcaggACAGAGGTGATGTTCATGGCACACCCGAGAACTTGTTCGCATCCTCCAAGTGGCCCTTTCCAATCCAATCTCTATTCCTTCAAATCTAGTGTCTCTTTTTTCCCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGcagtgagttttgaacatatctcattaccttctcagacattgcaacacaggac Alignment from CESAR gACAGAGGTGATGTTCATGGCA-ACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGca tggtcttcctcccttttccttctatttcactcctgctgtccctttttcaggACAGAGGTGATGTTCATGGCACACCCGAGAACTTGTTCGCATCCTCCAAGTGGCCCTTTCCAATCCAATCTCTATTCCTTCAAATCTAGTGTCTCTTTTTTCCCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGcagtgagttttgaacatatctcattaccttctcagacattgcaacacaggac Alignment from Spaln_aa2Genome GACAGAGGTGATGTTCATGGCA-ACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCA tggtcttcctcccttttccttctatttcactcctgctgtccctttttcagGACAGAGGTGATGTTCATGGCAcACCCGAGAACTTGTTCGCATCCTCCAAGTGGCCCTTTCCAATCCAATCTCTATTCCTTCAAATCTAGTGTCTCTTTTTTCCCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGCAgtgagttttgaacatatctcattaccttctcagacattgcaacacaggac Alignment from Spaln_nt2Genome GACAGAGGTGATGTTCATGGCA-ACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCA tggtcttcctcccttttccttctatttcactcctgctgtccctttttcagGACAGAGGTGATGTTCATGGCACACCCGAGAACTTGTTCGCATCCTCCAAGTGGCCCTTTCCAATCCAATCTCTATTCCTTCAAATCTAGTGTCTCTTTTTTCCCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGCAgtgagttttgaacatatctcattaccttctcagacattgcaacacaggac Alignment from Pairagon GACAGAGGTGATGTTCATGGCA-ACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCA tggtcttcctcccttttccttctatttcactcctgctgtccctttttcagGACAGAGGTGATGTTCATGGCACACCCGAGAACTTGTTCGCATCCTCCAAGTGGCCCTTTCCAATCCAATCTCTATTCCTTCAAATCTAGTGTCTCTTTTTTCCCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGCAgtgagttttgaacatatctcattaccttctcagacattgcaacacaggac Alignment from Exonerate_protein2genome GACAGAGGTGATGTTCATGGCA-ACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAGCTGGTTCAGGGGATA tggtcttcctcccttttccttctatttcactcctgctgtccctttttcagGACAGAGGTGATGTTCATGGCACACCCGAGAACTTGTTCGCATCCTCCAAGTGGCCCTTTCCAATCCAATCTCTATTCCTTCAAATCTAGTGTCTCTTTTTTCCCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGCAGTGAGTTTTGAACATAtctcattaccttctcagacattgcaacacaggac Alignment from Exonerate_coding2genome GACAGAGGTGATGTTCATGGCA-ACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAGCTGGTTCAGGGGATA tggtcttcctcccttttccttctatttcactcctgctgtccctttttcagGACAGAGGTGATGTTCATGGCACACCCGAGAACTTGTTCGCATCCTCCAAGTGGCCCTTTCCAATCCAATCTCTATTCCTTCAAATCTAGTGTCTCTTTTTTCCCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGCAGTGAGTTTTGAACATAtctcattaccttctcagacattgcaacacaggac Alignment from GeneWise GACAGAGGTGATGTTCATG-GCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAG tggtcttcctcccttttccttctatttcactcctgctgtccctttttcagGACAGAGGTGATGTTCATGGCACACCCGAGAACTTGTTCGCATCCTCCAAGTGGCCCTTTCCAATCCAATCTCTATTCCTTCAAATCTAGTGTCTCTTTTTTCCCGTTTTGTTGACCGACAGAAACTGAACTTGTTAGAAACCAAACTGCAGtgagttttgaacatatctcattaccttctcagacattgcaacacaggac #### Pcnxl3_ID1159_34 --> 2 - 0 Original Alignment gcAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGC-CCCAAAGGAGGCACCCCCAAATCTCAG tgtgtgagacatcacgccagctgccacgatctctctctctttttttctaggcAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCTGGCCCTGCTCTCCTCAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCGGAAGGGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCCCAAAGGGGGTACCCCCAAGTCTCAGgtctatagcctgtggaaaaaggcgcctctgggagctcttaggttggttca Alignment from CESAR gcAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCC-AAAGGAGGCACCCCCAAATCTCAG tgtgtgagacatcacgccagctgccacgatctctctctctttttttctaggcAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCTGGCCCTGCTCTCCTCAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCGGAAGGGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCCCAAAGGGGGTACCCCCAAGTCTCAGgtctatagcctgtggaaaaaggcgcctctgggagctcttaggttggttca Alignment from Spaln_aa2Genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCC-AAAGGAGGCACCCCCAAATCTCAG tgtgtgagacatcacgccagctgccacgatctctctctctttttttctagGCAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCTGGCCCTGCTCTCCTCAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCGGAAGGGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCCcAAAGGGGGTACCCCCAAGTCTCAGgtctatagcctgtggaaaaaggcgcctctgggagctcttaggttggttca Alignment from Spaln_nt2Genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCC-AAAGGAGGCACCCCCAAATCTCAG tgtgtgagacatcacgccagctgccacgatctctctctctttttttctagGCAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCTGGCCCTGCTCTCCTCAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCGGAAGGGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCCCAAAGGGGGTACCCCCAAGTCTCAGgtctatagcctgtggaaaaaggcgcctctgggagctcttaggttggttca Alignment from Pairagon GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAG-CCCCAAAGGAGGCACCCCCAAATCTC---------------------------------------------------- tgtgtgagacatcacgccagctgccacgatctctctctctttttttctagGCAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCTGGCCCTGCTCTCCTCAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCGGAAGGGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCCCAAAGGGGGTACCCCCAAGTCTCAGGTCTATAGCCTGTGGAAAAAGGCGCCTCTGGGAGCTCTTAGGTTGGTTCA Alignment from Exonerate_protein2genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGC-CCCAAAGGAGGCACCCCCAAATCTCAG tgtgtgagacatcacgccagctgccacgatctctctctctttttttctagGCAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCTGGCCCTGCTCTCCTCAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCGGAAGGGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCCCAAAGGGGGTACCCCCAAGTCTCAGgtctatagcctgtggaaaaaggcgcctctgggagctcttaggttggttca Alignment from Exonerate_coding2genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGC-CCCAAAGGAGGCACCCCCAAATCTCAG tgtgtgagacatcacgccagctgccacgatctctctctctttttttctagGCAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCTGGCCCTGCTCTCCTCAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCGGAAGGGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCCCAAAGGGGGTACCCCCAAGTCTCAGgtctatagcctgtggaaaaaggcgcctctgggagctcttaggttggttca Alignment from GeneWise GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tgtgtgagacatcacgccagctgccacgatctctctctctttttttctagGCAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCTGGCCCTGCTCTCCTCAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCGGAAGGGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCCCAAAGGGGGTACCCC------CAAgtctcaggtctatagcctgtggaaaaaggcgcctctgggagctcttaggttggttca #### Pcnxl3_ID1162_31 --> 0 - 0 Original Alignment GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAG-TACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG atatgccttcccctcaacctggtccctgctgaccccattccttttcctagGACCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCTCTGTATGACACCATTGCGGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCCATTCTCAGCAACACCCCCTCCCTACTGGTGCTACGCCATGACATGGATGACGCTTCTGATGAGCTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatccattaggcagcctatgttgctcctttgcc Alignment from CESAR GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAG-TACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG atatgccttcccctcaacctggtccctgctgaccccattccttttcctagGACCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCTCTGTATGACACCATTGCGGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCCATTCTCAGCAACACCCCCTCCCTACTGGTGCTACGCCATGACATGGATGACGCTTCTGATGAGCTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatccattaggcagcctatgttgctcctttgcc Alignment from Spaln_aa2Genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAG-TACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG atatgccttcccctcaacctggtccctgctgaccccattccttttcctagGACCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCTCTGTATGACACCATTGCGGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCCATTCTCAGCAACACCCCCTCCCTACTGGTGCTACGCCATGACATGGATGACGCTTCTGATGAGcTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatccattaggcagcctatgttgctcctttgcc Alignment from Spaln_nt2Genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAG-TACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG atatgccttcccctcaacctggtccctgctgaccccattccttttcctagGACCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCTCTGTATGACACCATTGCGGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCCATTCTCAGCAACACCCCCTCCCTACTGGTGCTACGCCATGACATGGATGACGCTTCTGATGAGCTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatccattaggcagcctatgttgctcctttgcc Alignment from Pairagon GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAG-TACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG atatgccttcccctcaacctggtccctgctgaccccattccttttcctagGACCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCTCTGTATGACACCATTGCGGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCCATTCTCAGCAACACCCCCTCCCTACTGGTGCTACGCCATGACATGGATGACGCTTCTGATGAGCTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatccattaggcagcctatgttgctcctttgcc Alignment from Exonerate_protein2genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAG-TACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG atatgccttcccctcaacctggtccctgctgaccccattccttttcctagGACCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCTCTGTATGACACCATTGCGGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCCATTCTCAGCAACACCCCCTCCCTACTGGTGCTACGCCATGACATGGATGACGCTTCTGATGAGCTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatccattaggcagcctatgttgctcctttgcc Alignment from Exonerate_coding2genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAG-TACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG atatgccttcccctcaacctggtccctgctgaccccattccttttcctagGACCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCTCTGTATGACACCATTGCGGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCCATTCTCAGCAACACCCCCTCCCTACTGGTGCTACGCCATGACATGGATGACGCTTCTGATGAGCTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatccattaggcagcctatgttgctcctttgcc Alignment from GeneWise GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGAC-GAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG atatgccttcccctcaacctggtccctgctgaccccattccttttcctagGACCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCTCTGTATGACACCATTGCGGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCCATTCTCAGCAACACCCCCTCCCTACTGGTGCTACGCCATGACATGGATGACGCTTCTGATGAGCTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatccattaggcagcctatgttgctcctttgcc #### Pcnxl3_ID1164_29 --> 0 - 2 Original Alignment CCCGTGGACCAG-GACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCag ttgtgctgcctggggtctttgggtgaacatgcacgtatcgaatcttttagCCCGTGGACCAGCGACTGGAATTCACCATTGGTTACATTGTGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCaggtaagtgcccacaggcagcagaagagcccaacaactcattagtacactta Alignment from CESAR CCCGTGGACCAG-GACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCag ttgtgctgcctggggtctttgggtgaacatgcacgtatcgaatcttttagCCCGTGGACCAGCGACTGGAATTCACCATTGGTTACATTGTGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCaggtaagtgcccacaggcagcagaagagcccaacaactcattagtacactta Alignment from Spaln_aa2Genome CCCGTGGACCAG-GACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG ttgtgctgcctggggtctttgggtgaacatgcacgtatcgaatcttttagCCCGTGGACCAGcGACTGGAATTCACCATTGGTTACATTGTGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCAGgtaagtgcccacaggcagcagaagagcccaacaactcattagtacactta Alignment from Spaln_nt2Genome CCCGTGGACCAG-GACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG ttgtgctgcctggggtctttgggtgaacatgcacgtatcgaatcttttagCCCGTGGACCAGCGACTGGAATTCACCATTGGTTACATTGTGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCAGgtaagtgcccacaggcagcagaagagcccaacaactcattagtacactta Alignment from Pairagon CCCGTGGACCAG-GACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG ttgtgctgcctggggtctttgggtgaacatgcacgtatcgaatcttttagCCCGTGGACCAGCGACTGGAATTCACCATTGGTTACATTGTGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCAGgtaagtgcccacaggcagcagaagagcccaacaactcattagtacactta Alignment from Exonerate_protein2genome CCCGTGGACCAG-GACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG ttgtgctgcctggggtctttgggtgaacatgcacgtatcgaatcttttagCCCGTGGACCAGCGACTGGAATTCACCATTGGTTACATTGTGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCAGgtaagtgcccacaggcagcagaagagcccaacaactcattagtacactta Alignment from Exonerate_coding2genome CCCGTGGACCAG-GACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG ttgtgctgcctggggtctttgggtgaacatgcacgtatcgaatcttttagCCCGTGGACCAGCGACTGGAATTCACCATTGGTTACATTGTGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCAGgtaagtgcccacaggcagcagaagagcccaacaactcattagtacactta Alignment from GeneWise CCCGTGGAC-CAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG ttgtgctgcctggggtctttgggtgaacatgcacgtatcgaatcttttagCCCGTGGACCAGCGACTGGAATTCACCATTGGTTACATTGTGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCAGgtaagtgcccacaggcagcagaagagcccaacaactcattagtacactta #### Pcnxl3_ID1168_25 --> 1 - 1 Original Alignment cACTAAACGTGTGGAC-CATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAg gggaccagagaggacaacccagtgcataccgtgcttttgtgttttcacagcACTAAACCTGTGGACCCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAggtaagttactgcttgcctaggccttcataggaaggtgctgtctctacatg Alignment from CESAR cACTAAACGTGTGGAC-CATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAg gggaccagagaggacaacccagtgcataccgtgcttttgtgttttcacagcACTAAACCTGTGGACCCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAggtaagttactgcttgcctaggccttcataggaaggtgctgtctctacatg Alignment from Spaln_aa2Genome CACTAAACGTGTGGAC-CATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAG gggaccagagaggacaacccagtgcataccgtgcttttgtgttttcacagCACTAAACCTGTGGACcCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAGgtaagttactgcttgcctaggccttcataggaaggtgctgtctctacatg Alignment from Spaln_nt2Genome CACTAAACGTGTGGACC-ATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAG gggaccagagaggacaacccagtgcataccgtgcttttgtgttttcacagCACTAAACCTGTGGACCCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAGgtaagttactgcttgcctaggccttcataggaaggtgctgtctctacatg Alignment from Pairagon CACTAAACGTGTGGA-CCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAG gggaccagagaggacaacccagtgcataccgtgcttttgtgttttcacagCACTAAACCTGTGGACCCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAGgtaagttactgcttgcctaggccttcataggaaggtgctgtctctacatg Alignment from Exonerate_protein2genome CACTAAACGTGTGGAC-CATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAG gggaccagagaggacaacccagtgcataccgtgcttttgtgttttcacagCACTAAACCTGTGGACCCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAGgtaagttactgcttgcctaggccttcataggaaggtgctgtctctacatg Alignment from Exonerate_coding2genome CACTAAACGTGTGGAC-CATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAG gggaccagagaggacaacccagtgcataccgtgcttttgtgttttcacagCACTAAACCTGTGGACCCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAGgtaagttactgcttgcctaggccttcataggaaggtgctgtctctacatg Alignment from GeneWise CACTAAACGTGTG-GACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAG gggaccagagaggacaacccagtgcataccgtgcttttgtgttttcacagCACTAAACCTGTGGACCCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAGgtaagttactgcttgcctaggccttcataggaaggtgctgtctctacatg #### Pcnxl3_ID1169_24 --> 2 - 2 Original Alignment acTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGC-AGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACaa ggctacagaggagaggagagggaggcagttgtctctcatttgctcctcagacTCAGCTATGCTGTTCCTTCAGGCCCTGCTTTCAGGGCTTTTCTCTACCCCACTCAACCCCTTATTGGGCCAGTGCAGTATTCATTATGTCCTACACAAGGCCCCTCAAGTTCTGGGAGAGGGACTACaagtaagtctcagaggaggtaaggaataagcactgttgtcccagagacctta Alignment from CESAR acTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGC-AGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACaa ggctacagaggagaggagagggaggcagttgtctctcatttgctcctcagacTCAGCTATGCTGTTCCTTCAGGCCCTGCTTTCAGGGCTTTTCTCTACCCCACTCAACCCCTTATTGGGCCAGTGCAGTATTCATTATGTCCTACACAAGGCCCCTCAAGTTCTGGGAGAGGGACTACaagtaagtctcagaggaggtaaggaataagcactgttgtcccagagacctta Alignment from Spaln_aa2Genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGC-AGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagttgtctctcatttgctcctcagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTTTCAGGGCTTTTCTCTACCCCACTCAACCCCTTATTGGGCcAGTGCAGTATTCATTATGTCCTACACAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAAgtaagtctcagaggaggtaaggaataagcactgttgtcccagagacctta Alignment from Spaln_nt2Genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGC-AGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagttgtctctcatttgctcctcagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTTTCAGGGCTTTTCTCTACCCCACTCAACCCCTTATTGGGCCAGTGCAGTATTCATTATGTCCTACACAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAAgtaagtctcagaggaggtaaggaataagcactgttgtcccagagacctta Alignment from Pairagon ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGG-CAGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagttgtctctcatttgctcctcagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTTTCAGGGCTTTTCTCTACCCCACTCAACCCCTTATTGGGCCAGTGCAGTATTCATTATGTCCTACACAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAAgtaagtctcagaggaggtaaggaataagcactgttgtcccagagacctta Alignment from Exonerate_protein2genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGC-AGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagttgtctctcatttgctcctcagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTTTCAGGGCTTTTCTCTACCCCACTCAACCCCTTATTGGGCCAGTGCAGTATTCATTATGTCCTACACAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAAgtaagtctcagaggaggtaaggaataagcactgttgtcccagagacctta Alignment from Exonerate_coding2genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGC-AGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagttgtctctcatttgctcctcagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTTTCAGGGCTTTTCTCTACCCCACTCAACCCCTTATTGGGCCAGTGCAGTATTCATTATGTCCTACACAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAAgtaagtctcagaggaggtaaggaataagcactgttgtcccagagacctta Alignment from GeneWise ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGC-AGCGCAGTCTTCATCATGTCCTACGCAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagttgtctctcatttgctcctcagACTCAGCTATGCTGTTCCTTCAGGCCCTGCTTTCAGGGCTTTTCTCTACCCCACTCAACCCCTTATTGGGCCAGTGCAGTATTCATTATGTCCTACACAAGGCCCCTCAAGTTCTGGGAGAGGGACTACAAgtaagtctcagaggaggtaaggaataagcactgttgtcccagagacctta #### Pcnxl3_ID1174_19 --> 0 - 0 Original Alignment CGGGAAGTCTTGCACTCCGACCTGGTGATG-TGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgacacaatgccactggcagtcactgtttttaattgatttatgtttcagAGGGAAGTCTTGCACTCTGACCTGGTAATGCTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGTGCCAGCACTGTCTTCATTGCCTTGAAGgtacagttggaataggtacaccttttggcatagatcaggatgctgctatg Alignment from CESAR CGGGAAGTCTTGCACTCCGACCTGGTGATG-TGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgacacaatgccactggcagtcactgtttttaattgatttatgtttcagAGGGAAGTCTTGCACTCTGACCTGGTAATGCTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGTGCCAGCACTGTCTTCATTGCCTTGAAGgtacagttggaataggtacaccttttggcatagatcaggatgctgctatg Alignment from Spaln_aa2Genome CGGGAAGTCTTGCACTCCGACCTGGTGATG-TGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgacacaatgccactggcagtcactgtttttaattgatttatgtttcagAGGGAAGTCTTGCACTCTGACCTGGTAATGcTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGTGCCAGCACTGTCTTCATTGCCTTGAAGgtacagttggaataggtacaccttttggcatagatcaggatgctgctatg Alignment from Spaln_nt2Genome CGGGAAGTCTTGCACTCCGACCTGGTGATG-TGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgacacaatgccactggcagtcactgtttttaattgatttatgtttcagAGGGAAGTCTTGCACTCTGACCTGGTAATGCTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGTGCCAGCACTGTCTTCATTGCCTTGAAGgtacagttggaataggtacaccttttggcatagatcaggatgctgctatg Alignment from Pairagon CGGGAAGTCTTGCACTCCGACCTGGTGATG-TGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgacacaatgccactggcagtcactgtttttaattgatttatgtttcagAGGGAAGTCTTGCACTCTGACCTGGTAATGCTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGTGCCAGCACTGTCTTCATTGCCTTGAAGgtacagttggaataggtacaccttttggcatagatcaggatgctgctatg Alignment from Exonerate_protein2genome CGGGAAGTCTTGCACTCCGACCTGGTGATG-TGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgacacaatgccactggcagtcactgtttttaattgatttatgtttcagAGGGAAGTCTTGCACTCTGACCTGGTAATGCTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGTGCCAGCACTGTCTTCATTGCCTTGAAGgtacagttggaataggtacaccttttggcatagatcaggatgctgctatg Alignment from Exonerate_coding2genome CGGGAAGTCTTGCACTCCGACCTGGTGATG-TGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgacacaatgccactggcagtcactgtttttaattgatttatgtttcagAGGGAAGTCTTGCACTCTGACCTGGTAATGCTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGTGCCAGCACTGTCTTCATTGCCTTGAAGgtacagttggaataggtacaccttttggcatagatcaggatgctgctatg Alignment from GeneWise CGGGAAGTCTTGCACTCCGACCTGGTG-ATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgacacaatgccactggcagtcactgtttttaattgatttatgtttcagAGGGAAGTCTTGCACTCTGACCTGGTAATGCTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGTGCCAGCACTGTCTTCATTGCCTTGAAGgtacagttggaataggtacaccttttggcatagatcaggatgctgctatg #### Pcnxl3_ID1178_15 --> 2 - 1 Original Alignment tgTTCACCTTATGCTTTCCGTTCGTCTTCCTC-CTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAg gctttacagaagggcaagcttactagtgtcattcactctggctcttatagtaTTCACCTTATGCTTTCCATTTGTATTCCTGCCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAACAGATAGACATGCATGGTTTTGGAGGCACAggtactgtgtacccaggatggtctttgtacaggggggttggtcccacacga Alignment from CESAR tgTTCACCTTATGCTTTCCGTTCGTCTTCCTC-CTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAg gctttacagaagggcaagcttactagtgtcattcactctggctcttatagtaTTCACCTTATGCTTTCCATTTGTATTCCTGCCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAACAGATAGACATGCATGGTTTTGGAGGCACAggtactgtgtacccaggatggtctttgtacaggggggttggtcccacacga Alignment from Spaln_aa2Genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTC-CTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG gctttacagaagggcaagcttactagtgtcattcactctggctcttatagTATTCACCTTATGCTTTCCATTTGTATTCCTGcCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAACAGATAGACATGCATGGTTTTGGAGGCACAGgtactgtgtacccaggatggtctttgtacaggggggttggtcccacacga Alignment from Spaln_nt2Genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCT-CCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG gctttacagaagggcaagcttactagtgtcattcactctggctcttatagTATTCACCTTATGCTTTCCATTTGTATTCCTGCCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAACAGATAGACATGCATGGTTTTGGAGGCACAGgtactgtgtacccaggatggtctttgtacaggggggttggtcccacacga Alignment from Pairagon TGTTCACCTTATGCTTTCCGTTCGTCTTCCT-CCTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG gctttacagaagggcaagcttactagtgtcattcactctggctcttatagTATTCACCTTATGCTTTCCATTTGTATTCCTGCCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAACAGATAGACATGCATGGTTTTGGAGGCACAGgtactgtgtacccaggatggtctttgtacaggggggttggtcccacacga Alignment from Exonerate_protein2genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTC-CTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG gctttacagaagggcaagcttactagtgtcattcactctggctcttatagTATTCACCTTATGCTTTCCATTTGTATTCCTGCCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAACAGATAGACATGCATGGTTTTGGAGGCACAGgtactgtgtacccaggatggtctttgtacaggggggttggtcccacacga Alignment from Exonerate_coding2genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTC-CTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG gctttacagaagggcaagcttactagtgtcattcactctggctcttatagTATTCACCTTATGCTTTCCATTTGTATTCCTGCCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAACAGATAGACATGCATGGTTTTGGAGGCACAGgtactgtgtacccaggatggtctttgtacaggggggttggtcccacacga Alignment from GeneWise TGTTCACCTTATGCTTTCCGTTCGTCTTCCTC-CTGGGCCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG gctttacagaagggcaagcttactagtgtcattcactctggctcttatagTATTCACCTTATGCTTTCCATTTGTATTCCTGCCTGGGGCTCCTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAACAGATAGACATGCATGGTTTTGGAGGCACAGgtactgtgtacccaggatggtctttgtacaggggggttggtcccacacga #### Pcnxl3_ID1179_14 --> 0 - 1 Original Alignment GGCCACAACTGGGTGATT-GCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTg cccaaaggccactggggatggtccaaaattctctccttcctgatctttagGGTCACAACTGGGTGATTCGCATACAGCCGTCCTGTCTACTTCTGTATCTGCTGTCTGCTCATCTGGTTGCTGGATGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTATATGGCCTCACACTCTTTTCCGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCCACTggtactacagggcaagatagatcaagggactgagtctgaaggctgggcttt Alignment from CESAR GGCCACAACTGGGTGATT-GCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTg cccaaaggccactggggatggtccaaaattctctccttcctgatctttagGGTCACAACTGGGTGATTCGCATACAGCCGTCCTGTCTACTTCTGTATCTGCTGTCTGCTCATCTGGTTGCTGGATGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTATATGGCCTCACACTCTTTTCCGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCCACTggtactacagggcaagatagatcaagggactgagtctgaaggctgggcttt Alignment from Spaln_aa2Genome GGCCACAACTGGGTGATT-GCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG cccaaaggccactggggatggtccaaaattctctccttcctgatctttagGGTCACAACTGGGTGATTcGCATACAGCCGTCCTGTCTACTTCTGTATCTGCTGTCTGCTCATCTGGTTGCTGGATGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTATATGGCCTCACACTCTTTTCCGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCCACTGgtactacagggcaagatagatcaagggactgagtctgaaggctgggcttt Alignment from Spaln_nt2Genome GGCCACAACTGGGTGATT-GCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG cccaaaggccactggggatggtccaaaattctctccttcctgatctttagGGTCACAACTGGGTGATTCGCATACAGCCGTCCTGTCTACTTCTGTATCTGCTGTCTGCTCATCTGGTTGCTGGATGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTATATGGCCTCACACTCTTTTCCGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCCACTGgtactacagggcaagatagatcaagggactgagtctgaaggctgggcttt Alignment from Pairagon GGCCACAACTGGGTGATT-GCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG cccaaaggccactggggatggtccaaaattctctccttcctgatctttagGGTCACAACTGGGTGATTCGCATACAGCCGTCCTGTCTACTTCTGTATCTGCTGTCTGCTCATCTGGTTGCTGGATGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTATATGGCCTCACACTCTTTTCCGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCCACTGgtactacagggcaagatagatcaagggactgagtctgaaggctgggcttt Alignment from Exonerate_protein2genome GGCCACAACTGGGTGATT-GCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG cccaaaggccactggggatggtccaaaattctctccttcctgatctttagGGTCACAACTGGGTGATTCGCATACAGCCGTCCTGTCTACTTCTGTATCTGCTGTCTGCTCATCTGGTTGCTGGATGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTATATGGCCTCACACTCTTTTCCGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCCACTGgtactacagggcaagatagatcaagggactgagtctgaaggctgggcttt Alignment from Exonerate_coding2genome GGCCACAACTGGGTGATT-GCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG cccaaaggccactggggatggtccaaaattctctccttcctgatctttagGGTCACAACTGGGTGATTCGCATACAGCCGTCCTGTCTACTTCTGTATCTGCTGTCTGCTCATCTGGTTGCTGGATGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTATATGGCCTCACACTCTTTTCCGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCCACTGgtactacagggcaagatagatcaagggactgagtctgaaggctgggcttt Alignment from GeneWise GGCCACAACTGGGTGATT-GCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG cccaaaggccactggggatggtccaaaattctctccttcctgatctttagGGTCACAACTGGGTGATTCGCATACAGCCGTCCTGTCTACTTCTGTATCTGCTGTCTGCTCATCTGGTTGCTGGATGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTATATGGCCTCACACTCTTTTCCGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCCACTGgtactacagggcaagatagatcaagggactgagtctgaaggctgggcttt #### Pcnxl3_ID1186_7 --> 2 - 2 Original Alignment caCCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATG-GGCTCACCACCTag gcccatcccggcccagtttgtaacttatgatcatttgactctctctgcagcaCCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGCGAGGAGAGCGCAAGCTATCTGGAGACGACACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGCGGCTCACCACCTaggtaagaagctgtccaatgattccagtacagaaggggcaactgggtctcct Alignment from CESAR caCCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATG-GGCTCACCACCTag gcccatcccggcccagtttgtaacttatgatcatttgactctctctgcagcaCCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGCGAGGAGAGCGCAAGCTATCTGGAGACGACACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGCGGCTCACCACCTaggtaagaagctgtccaatgattccagtacagaaggggcaactgggtctcct Alignment from Spaln_aa2Genome CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATG-GGCTCACCACCTAG gcccatcccggcccagtttgtaacttatgatcatttgactctctctgcagCACCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGCGAGGAGAGCGCAAGCTATCTGGAGACGACACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGcGGCTCACCACCTAGgtaagaagctgtccaatgattccagtacagaaggggcaactgggtctcct Alignment from Spaln_nt2Genome CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATG-GGCTCACCACCTAG gcccatcccggcccagtttgtaacttatgatcatttgactctctctgcagCACCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGCGAGGAGAGCGCAAGCTATCTGGAGACGACACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGCGGCTCACCACCTAGgtaagaagctgtccaatgattccagtacagaaggggcaactgggtctcct Alignment from Pairagon CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATG-GGCTCACCACCTAG gcccatcccggcccagtttgtaacttatgatcatttgactctctctgcagCACCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGCGAGGAGAGCGCAAGCTATCTGGAGACGACACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGCGGCTCACCACCTAGgtaagaagctgtccaatgattccagtacagaaggggcaactgggtctcct Alignment from Exonerate_protein2genome CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATG-GGCTCACCACCTAG gcccatcccggcccagtttgtaacttatgatcatttgactctctctgcagCACCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGCGAGGAGAGCGCAAGCTATCTGGAGACGACACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGCGGCTCACCACCTAGgtaagaagctgtccaatgattccagtacagaaggggcaactgggtctcct Alignment from Exonerate_coding2genome CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATG-GGCTCACCACCTAG gcccatcccggcccagtttgtaacttatgatcatttgactctctctgcagCACCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGCGAGGAGAGCGCAAGCTATCTGGAGACGACACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGCGGCTCACCACCTAGgtaagaagctgtccaatgattccagtacagaaggggcaactgggtctcct Alignment from GeneWise CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTC-ATGGGCTCACCACCTAG gcccatcccggcccagtttgtaacttatgatcatttgactctctctgcagCACCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGCGAGGAGAGCGCAAGCTATCTGGAGACGACACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGCGGCTCACCACCTAGgtaagaagctgtccaatgattccagtacagaaggggcaactgggtctcct #### Pcnxl3_ID1189_4 --> 0 - 1 Original Alignment GAGTTGCTGCCCCGG-ATGGAGGATTCTGGGCCCCTCAGAg ttactctctcacctggttgttgatctgtacatatcttcattcttttatagGAGTTGCTGTCCCGGCATGGAGGATTCTGGGCCTCTCAGAggtgtgttgcttcagtttttggcacagtggtcattgcgtggtgcaggacaa Alignment from CESAR GAGTTGCTGCCCCGG-ATGGAGGATTCTGGGCCCCTCAGAg ttactctctcacctggttgttgatctgtacatatcttcattcttttatagGAGTTGCTGTCCCGGCATGGAGGATTCTGGGCCTCTCAGAggtgtgttgcttcagtttttggcacagtggtcattgcgtggtgcaggacaa Alignment from Spaln_aa2Genome TTCGGAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAG ttactctctcacctggttgttgatctgtacatatcttcattcttttatagGAGT---TGCTGTCCCGGCATGGAGGATTCTGGGCCTCTCAGAGgtgtgttgcttcagtttttggcacagtggtcattgcgtggtgcaggacaa Alignment from Spaln_nt2Genome GAGTTGCTGCCCCGG-ATGGAGGATTCTGGGCCCCTCAGAG ttactctctcacctggttgttgatctgtacatatcttcattcttttatagGAGTTGCTGTCCCGGCATGGAGGATTCTGGGCCTCTCAGAGgtgtgttgcttcagtttttggcacagtggtcattgcgtggtgcaggacaa Alignment from Pairagon GAGTTGCTGCCCCGG-ATGGAGGATTCTGGGCCCCTCAGAG ttactctctcacctggttgttgatctgtacatatcttcattcttttatagGAGTTGCTGTCCCGGCATGGAGGATTCTGGGCCTCTCAGAGgtgtgttgcttcagtttttggcacagtggtcattgcgtggtgcaggacaa Alignment from Exonerate_protein2genome GAGTTGCTG-CCCCGGATGGAGGATTCTGGGCCCCTCAGAG ttactctctcacctggttgttgatctgtacatatcttcattcttttatagGAGTTGCTGTCCCGGCATGGAGGATTCTGGGCCTCTCAGAGgtgtgttgcttcagtttttggcacagtggtcattgcgtggtgcaggacaa Alignment from Exonerate_coding2genome ttactctctcacctggttgttgatctgtacatatcttcattcttttataggagttgctgtcccggcatggaggattctgggcctctcagaggtgtgttgcttcagtttttggcacagtggtcattgcgtggtgcaggacaa Alignment from GeneWise ttactctctcacctggttgttgatctgtacatatcttcattcttttataggagttgctgtcccggcatggaggattctgggcctctcagaggtgtgttgcttcagtttttggcacagtggtcattgcgtggtgcaggacaa #### Pcnxl3_ID1191_2 --> 0 - 2 Original Alignment GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTG-TACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAag tcaagcaagcaattctgtgagaagggatatgctctaccttcctttttcagGTCCCGCCCCCCAGTCTCATGGTGGCTGGGGTGCTATTGCCTAGTGGTGGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCACATTTGACCAGGGTGAGATTGTGGAAAAACGCAATTCTACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAaggtgagtaatcccaggctgtgtcagagtttgtccttgctctggacttatga Alignment from CESAR GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTG-TACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAag tcaagcaagcaattctgtgagaagggatatgctctaccttcctttttcagGTCCCGCCCCCCAGTCTCATGGTGGCTGGGGTGCTATTGCCTAGTGGTGGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCACATTTGACCAGGGTGAGATTGTGGAAAAACGCAATTCTACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAaggtgagtaatcccaggctgtgtcagagtttgtccttgctctggacttatga Alignment from Spaln_aa2Genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTG-TACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcaagcaagcaattctgtgagaagggatatgctctaccttcctttttcagGTCCCGCCCCCCAGTCTCATGGTGGCTGGGGTGcTATTGCCTAGTGGTGGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCACATTTGACCAGGGTGAGATTGTGGAAAAACGCAATTCTACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGgtgagtaatcccaggctgtgtcagagtttgtccttgctctggacttatga Alignment from Spaln_nt2Genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTG-TACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcaagcaagcaattctgtgagaagggatatgctctaccttcctttttcagGTCCCGCCCCCCAGTCTCATGGTGGCTGGGGTGCTATTGCCTAGTGGTGGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCACATTTGACCAGGGTGAGATTGTGGAAAAACGCAATTCTACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGgtgagtaatcccaggctgtgtcagagtttgtccttgctctggacttatga Alignment from Pairagon GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTG-TACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcaagcaagcaattctgtgagaagggatatgctctaccttcctttttcagGTCCCGCCCCCCAGTCTCATGGTGGCTGGGGTGCTATTGCCTAGTGGTGGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCACATTTGACCAGGGTGAGATTGTGGAAAAACGCAATTCTACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGgtgagtaatcccaggctgtgtcagagtttgtccttgctctggacttatga Alignment from Exonerate_protein2genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTG-TACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcaagcaagcaattctgtgagaagggatatgctctaccttcctttttcagGTCCCGCCCCCCAGTCTCATGGTGGCTGGGGTGCTATTGCCTAGTGGTGGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCACATTTGACCAGGGTGAGATTGTGGAAAAACGCAATTCTACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGgtgagtaatcccaggctgtgtcagagtttgtccttgctctggacttatga Alignment from Exonerate_coding2genome GTCCTGCCCCCCAGCCTGATGGTGGCTGGAGTG-TACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcaagcaagcaattctgtgagaagggatatgctctaccttcctttttcagGTCCCGCCCCCCAGTCTCATGGTGGCTGGGGTGCTATTGCCTAGTGGTGGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCACATTTGACCAGGGTGAGATTGTGGAAAAACGCAATTCTACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGgtgagtaatcccaggctgtgtcagagtttgtccttgctctggacttatga Alignment from GeneWise GTCCTGCCCCCCAGCCTGATGGTGGCTGGA-GTGTACTGCCTGGTGGTAGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCATGTTCGACCAGGGCGAGATTGTGGAGAAACGCAACTCTACCATGGGGGAGCAGGAAGAAGAGGCTGCCCAGGGGGAGAGCAGTCTCCCAAG tcaagcaagcaattctgtgagaagggatatgctctaccttcctttttcagGTCCCGCCCCCCAGTCTCATGGTGGCTGGGGTGCTATTGCCTAGTGGTGGCTGTCATCTTTGCTACCATCAAGACTGTGAACTATCGCCTGCATGCCACATTTGACCAGGGTGAGATTGTGGAAAAACGCAATTCTACCATGGGGGAGAAAGAAGAAGAGGCTGCCCAGGGGGAAAGCAGTCTCCCAAGgtgagtaatcccaggctgtgtcagagtttgtccttgctctggacttatga #### Pcx_ID553_3 --> 2 - 0 Original Alignment gtGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATT-CCAGACATCATCAAGGTGGCCAAG tagtgtttctctcaggaccaagatgtccattggtcttcattactctttaggtGAAATTGCAATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGGCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCAGATGAAGCCTATCTTCTTGGCCGTGGCCTGGCACCTGTTCAAGCCTACCTGCACATTCCCAGACATCATCAGGGTGGCCAAAgtaagtatgccagggtttctgcaggccgggtaggatcttgttttacaccc Alignment from CESAR gtGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATT-CCAGACATCATCAAGGTGGCCAAG tagtgtttctctcaggaccaagatgtccattggtcttcattactctttaggtGAAATTGCAATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGGCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCAGATGAAGCCTATCTTCTTGGCCGTGGCCTGGCACCTGTTCAAGCCTACCTGCACATTCCCAGACATCATCAGGGTGGCCAAAgtaagtatgccagggtttctgcaggccgggtaggatcttgttttacaccc Alignment from Spaln_aa2Genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATT-CCAGACATCATCAAGGTGGCCAAG tagtgtttctctcaggaccaagatgtccattggtcttcattactctttagGTGAAATTGCAATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGGCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCAGATGAAGCCTATCTTCTTGGCCGTGGCCTGGCACCTGTTCAAGCCTACCTGCACATTcCCAGACATCATCAGGGTGGCCAAAgtaagtatgccagggtttctgcaggccgggtaggatcttgttttacaccc Alignment from Spaln_nt2Genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTC-CAGACATCATCAAGGTGGCCAAG tagtgtttctctcaggaccaagatgtccattggtcttcattactctttagGTGAAATTGCAATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGGCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCAGATGAAGCCTATCTTCTTGGCCGTGGCCTGGCACCTGTTCAAGCCTACCTGCACATTCCCAGACATCATCAGGGTGGCCAAAgtaagtatgccagggtttctgcaggccgggtaggatcttgttttacaccc Alignment from Pairagon GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATT-CCAGACATCATCAAGGTGGCCAAG tagtgtttctctcaggaccaagatgtccattggtcttcattactctttagGTGAAATTGCAATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGGCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCAGATGAAGCCTATCTTCTTGGCCGTGGCCTGGCACCTGTTCAAGCCTACCTGCACATTCCCAGACATCATCAGGGTGGCCAAAgtaagtatgccagggtttctgcaggccgggtaggatcttgttttacaccc Alignment from Exonerate_protein2genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATT-CCAGACATCATCAAGGTGGCCAAG tagtgtttctctcaggaccaagatgtccattggtcttcattactctttagGTGAAATTGCAATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGGCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCAGATGAAGCCTATCTTCTTGGCCGTGGCCTGGCACCTGTTCAAGCCTACCTGCACATTCCCAGACATCATCAGGGTGGCCAAAgtaagtatgccagggtttctgcaggccgggtaggatcttgttttacaccc Alignment from Exonerate_coding2genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATT-CCAGACATCATCAAGGTGGCCAAG tagtgtttctctcaggaccaagatgtccattggtcttcattactctttagGTGAAATTGCAATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGGCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCAGATGAAGCCTATCTTCTTGGCCGTGGCCTGGCACCTGTTCAAGCCTACCTGCACATTCCCAGACATCATCAGGGTGGCCAAAgtaagtatgccagggtttctgcaggccgggtaggatcttgttttacaccc Alignment from GeneWise GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCAC-ATTCCAGACATCATCAAGGTGGCCAAG tagtgtttctctcaggaccaagatgtccattggtcttcattactctttagGTGAAATTGCAATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGGCTGTATACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCAGATGAAGCCTATCTTCTTGGCCGTGGCCTGGCACCTGTTCAAGCCTACCTGCACATTCCCAGACATCATCAGGGTGGCCAAAgtaagtatgccagggtttctgcaggccgggtaggatcttgttttacaccc #### Pcx_ID555_5 --> 2 - 0 Original Alignment gcGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTC-AAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG ggccaggagagacagtccgggtgttctgctcccttccactattcccataggtGTTCCAGTGGTTCCTGGAACAGACTCCCCCATCAGCTCCTTACATGAAGCACATGAGTTCTCCAACACCTATGATTCTCCAATTATTTTCCAAGGCTGCCTATGGAGGTGGGGGCCGTGGTATGAGGGTTGTGCATAGCTATGAAgtgagaggaggagcacatatactacagtctctgtgataagccggcagcca Alignment from CESAR gcGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTC-AAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG ggccaggagagacagtccgggtgttctgctcccttccactattcccataggtGTTCCAGTGGTTCCTGGAACAGACTCCCCCATCAGCTCCTTACATGAAGCACATGAGTTCTCCAACACCTATGATTCTCCAATTATTTTCCAAGGCTGCCTATGGAGGTGGGGGCCGTGGTATGAGGGTTGTGCATAGCTATGAAgtgagaggaggagcacatatactacagtctctgtgataagccggcagcca Alignment from Spaln_aa2Genome GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTC-AAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG ggccaggagagacagtccgggtgttctgctcccttccactattcccatagGTGTTCCAGTGGTTCCTGGAACAGACTCCCCCATCAGCTCCTTACATGAAGCACATGAGTTCTCCAACACCTATGATTCTCCAATTATTTTCcAAGGCTGCCTATGGAGGTGGGGGCCGTGGTATGAGGGTTGTGCATAGCTATGAAgtgagaggaggagcacatatactacagtctctgtgataagccggcagcca Alignment from Spaln_nt2Genome GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTT-CAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG ggccaggagagacagtccgggtgttctgctcccttccactattcccatagGTGTTCCAGTGGTTCCTGGAACAGACTCCCCCATCAGCTCCTTACATGAAGCACATGAGTTCTCCAACACCTATGATTCTCCAATTATTTTCCAAGGCTGCCTATGGAGGTGGGGGCCGTGGTATGAGGGTTGTGCATAGCTATGAAgtgagaggaggagcacatatactacagtctctgtgataagccggcagcca Alignment from Pairagon GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTT-CAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG ggccaggagagacagtccgggtgttctgctcccttccactattcccatagGTGTTCCAGTGGTTCCTGGAACAGACTCCCCCATCAGCTCCTTACATGAAGCACATGAGTTCTCCAACACCTATGATTCTCCAATTATTTTCCAAGGCTGCCTATGGAGGTGGGGGCCGTGGTATGAGGGTTGTGCATAGCTATGAAgtgagaggaggagcacatatactacagtctctgtgataagccggcagcca Alignment from Exonerate_protein2genome GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTC-AAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG ggccaggagagacagtccgggtgttctgctcccttccactattcccatagGTGTTCCAGTGGTTCCTGGAACAGACTCCCCCATCAGCTCCTTACATGAAGCACATGAGTTCTCCAACACCTATGATTCTCCAATTATTTTCCAAGGCTGCCTATGGAGGTGGGGGCCGTGGTATGAGGGTTGTGCATAGCTATGAAgtgagaggaggagcacatatactacagtctctgtgataagccggcagcca Alignment from Exonerate_coding2genome GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTC-AAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG ggccaggagagacagtccgggtgttctgctcccttccactattcccatagGTGTTCCAGTGGTTCCTGGAACAGACTCCCCCATCAGCTCCTTACATGAAGCACATGAGTTCTCCAACACCTATGATTCTCCAATTATTTTCCAAGGCTGCCTATGGAGGTGGGGGCCGTGGTATGAGGGTTGTGCATAGCTATGAAgtgagaggaggagcacatatactacagtctctgtgataagccggcagcca Alignment from GeneWise GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTC-AAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG ggccaggagagacagtccgggtgttctgctcccttccactattcccatagGTGTTCCAGTGGTTCCTGGAACAGACTCCCCCATCAGCTCCTTACATGAAGCACATGAGTTCTCCAACACCTATGATTCTCCAATTATTTTCCAAGGCTGCCTATGGAGGTGGGGGCCGTGGTATGAGGGTTGTGCATAGCTATGAAgtgagaggaggagcacatatactacagtctctgtgataagccggcagcca #### Pcx_ID556_6 --> 0 - 1 Original Alignment GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGG-CACATTGAGGTGCAGATCCTAg acatgcacagcgctggccacatgcctgcatcttttttatgtttaaaatagGAGCTGGAAGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCTTTTGGGAACAGAGCACTGTTTGTGGAGAAGTTTATTGGGAAGCCAAGTCCACATTGAGGTGCAGATCCTAggtaagtggggaactgtctgaaacaacagaagcctacattgccccaatcta Alignment from CESAR GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGG-CACATTGAGGTGCAGATCCTAg acatgcacagcgctggccacatgcctgcatcttttttatgtttaaaatagGAGCTGGAAGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCTTTTGGGAACAGAGCACTGTTTGTGGAGAAGTTTATTGGGAAGCCAAGTCCACATTGAGGTGCAGATCCTAggtaagtggggaactgtctgaaacaacagaagcctacattgccccaatcta Alignment from Spaln_aa2Genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGG-CACATTGAGGTGCAGATCCTAG acatgcacagcgctggccacatgcctgcatcttttttatgtttaaaatagGAGCTGGAAGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCTTTTGGGAACAGAGCACTGTTTGTGGAGAAGTTTATTGGGAAGCCAAGTcCACATTGAGGTGCAGATCCTAGgtaagtggggaactgtctgaaacaacagaagcctacattgccccaatcta Alignment from Spaln_nt2Genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGC-ACATTGAGGTGCAGATCCTAG acatgcacagcgctggccacatgcctgcatcttttttatgtttaaaatagGAGCTGGAAGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCTTTTGGGAACAGAGCACTGTTTGTGGAGAAGTTTATTGGGAAGCCAAGTCCACATTGAGGTGCAGATCCTAGgtaagtggggaactgtctgaaacaacagaagcctacattgccccaatcta Alignment from Pairagon GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAG-GCACATTGAGGTGCAGATCCTAG acatgcacagcgctggccacatgcctgcatcttttttatgtttaaaatagGAGCTGGAAGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCTTTTGGGAACAGAGCACTGTTTGTGGAGAAGTTTATTGGGAAGCCAAGTCCACATTGAGGTGCAGATCCTAGgtaagtggggaactgtctgaaacaacagaagcctacattgccccaatcta Alignment from Exonerate_protein2genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGG-CACATTGAGGTGCAGATCCTAG acatgcacagcgctggccacatgcctgcatcttttttatgtttaaaatagGAGCTGGAAGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCTTTTGGGAACAGAGCACTGTTTGTGGAGAAGTTTATTGGGAAGCCAAGTCCACATTGAGGTGCAGATCCTAGgtaagtggggaactgtctgaaacaacagaagcctacattgccccaatcta Alignment from Exonerate_coding2genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGG-CACATTGAGGTGCAGATCCTAG acatgcacagcgctggccacatgcctgcatcttttttatgtttaaaatagGAGCTGGAAGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCTTTTGGGAACAGAGCACTGTTTGTGGAGAAGTTTATTGGGAAGCCAAGTCCACATTGAGGTGCAGATCCTAGgtaagtggggaactgtctgaaacaacagaagcctacattgccccaatcta Alignment from GeneWise GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCA- acatgcacagcgctggccacatgcctgcatcttttttatgtttaaaatagGAGCTGGAAGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCTTTTGGGAACAGAGCACTGTTTGTGGAGAAGTTTATTGGGAAGCCAAgtccacattgaggtgcagatcctaggtaagtggggaactgtctgaaacaacagaagcctacattgccccaatcta #### Pcx_ID564_13 --> 2 - 2 Original Alignment gcCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCG-TTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCaa tgagatggctttttttgtaagacaggcactgggcttttttgcattcacaggaCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGACCAGAGGGCTTTGCTCGAGCAGTGCGGAATCACCATGGGCTGCTGTTGATGGACACAACGTTCAGGGATGCTCACCAGTCATTACTGGCCACTCGAGTGCGCACACATGATCTCAAGAAGATTGCACCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGTGCCACATTTGATGTTGCAATGCACTTCCTGTATGAGTGCCCCTGGCGGCGGCTCCAGAAGCTGCGGAAGCTAATCCCAAATATCCCACTTCCAGATGCTACTCAGGGGGGCCAATGCTGTGGGCTATACCAACTATGCTGACAATGTTGTCTTCaagtacttctgagtctgctcagaccacggcagtggacgccaagggtttttaa Alignment from CESAR gcCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCG-TTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCaa tgagatggctttttttgtaagacaggcactgggcttttttgcattcacaggaCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGACCAGAGGGCTTTGCTCGAGCAGTGCGGAATCACCATGGGCTGCTGTTGATGGACACAACGTTCAGGGATGCTCACCAGTCATTACTGGCCACTCGAGTGCGCACACATGATCTCAAGAAGATTGCACCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGTGCCACATTTGATGTTGCAATGCACTTCCTGTATGAGTGCCCCTGGCGGCGGCTCCAGAAGCTGCGGAAGCTAATCCCAAATATCCCACTTCCAGATGCTACTCAGGGGGGCCAATGCTGTGGGCTATACCAACTATGCTGACAATGTTGTCTTCaagtacttctgagtctgctcagaccacggcagtggacgccaagggtttttaa Alignment from Spaln_aa2Genome GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCG-TTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA tgagatggctttttttgtaagacaggcactgggcttttttgcattcacagGACCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGACCAGAGGGCTTTGCTCGAGCAGTGCGGAATCACCATGGGCTGCTGTTGATGGACACAACGTTCAGGGATGCTCACCAGTCATTACTGGCCACTCGAGTGCGCACACATGATCTCAAGAAGATTGCACCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGTGCCACATTTGATGTTGCAATGCACTTCCTGTATGAGTGCCCCTGGCGGCGGCTCCAGAAGCTGCGGAAGCTAATCCCAAATATCCCAcTTCCAGATGCTACTCAGGGGGGCCAATGCTGTGGGCTATACCAACTATGCTGACAATGTTGTCTTCAAgtacttctgagtctgctcagaccacggcagtggacgccaagggtttttaa Alignment from Spaln_nt2Genome GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACAT-CCCGTTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA tgagatggctttttttgtaagacaggcactgggcttttttgcattcacagGACCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGACCAGAGGGCTTTGCTCGAGCAGTGCGGAATCACCATGGGCTGCTGTTGATGGACACAACGTTCAGGGATGCTCACCAGTCATTACTGGCCACTCGAGTGCGCACACATGATCTCAAGAAGATTGCACCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGTGCCACATTTGATGTTGCAATGCACTTCCTGTATGAGTGCCCCTGGCGGCGGCTCCAGAAGCTGCGGAAGCTAATCCCAAATATCCCACTTCCAGATGCTACTCAGGGGGGCCAATGCTGTGGGCTATACCAACTATGCTGACAATGTTGTCTTCAAgtacttctgagtctgctcagaccacggcagtggacgccaagggtttttaa Alignment from Pairagon GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCG-TTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA tgagatggctttttttgtaagacaggcactgggcttttttgcattcacagGACCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGACCAGAGGGCTTTGCTCGAGCAGTGCGGAATCACCATGGGCTGCTGTTGATGGACACAACGTTCAGGGATGCTCACCAGTCATTACTGGCCACTCGAGTGCGCACACATGATCTCAAGAAGATTGCACCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGTGCCACATTTGATGTTGCAATGCACTTCCTGTATGAGTGCCCCTGGCGGCGGCTCCAGAAGCTGCGGAAGCTAATCCCAAATATCCCACTTCCAGATGCTACTCAGGGGGGCCAATGCTGTGGGCTATACCAACTATGCTGACAATGTTGTCTTCAAgtacttctgagtctgctcagaccacggcagtggacgccaagggtttttaa Alignment from Exonerate_protein2genome GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCG-TTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA tgagatggctttttttgtaagacaggcactgggcttttttgcattcacagGACCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGACCAGAGGGCTTTGCTCGAGCAGTGCGGAATCACCATGGGCTGCTGTTGATGGACACAACGTTCAGGGATGCTCACCAGTCATTACTGGCCACTCGAGTGCGCACACATGATCTCAAGAAGATTGCACCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGTGCCACATTTGATGTTGCAATGCACTTCCTGTATGAGTGCCCCTGGCGGCGGCTCCAGAAGCTGCGGAAGCTAATCCCAAATATCCCACTTCCAGATGCTACTCAGGGGGGCCAATGCTGTGGGCTATACCAACTATGCTGACAATGTTGTCTTCAAgtacttctgagtctgctcagaccacggcagtggacgccaagggtttttaa Alignment from Exonerate_coding2genome GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCG-TTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA tgagatggctttttttgtaagacaggcactgggcttttttgcattcacagGACCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGACCAGAGGGCTTTGCTCGAGCAGTGCGGAATCACCATGGGCTGCTGTTGATGGACACAACGTTCAGGGATGCTCACCAGTCATTACTGGCCACTCGAGTGCGCACACATGATCTCAAGAAGATTGCACCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGTGCCACATTTGATGTTGCAATGCACTTCCTGTATGAGTGCCCCTGGCGGCGGCTCCAGAAGCTGCGGAAGCTAATCCCAAATATCCCACTTCCAGATGCTACTCAGGGGGGCCAATGCTGTGGGCTATACCAACTATGCTGACAATGTTGTCTTCAAgtacttctgagtctgctcagaccacggcagtggacgccaagggtttttaa Alignment from GeneWise GCCCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGGCCAGAGGGCTTTGCCCGAGCTGTGCGGAATCACCAGGGGCTGCTGTTGATGGACACAACCTTCCGGGATGCCCACCAGTCACTACTGGCCACTAGAGTGCGCACACATGATCTCAAAAAGATTGCGCCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGCGCCACGTTCGACGTTGCCATGCGCTTCCTGTACGAGTGCCCCTGGCGGCGGCTCCAGGAGCTCCGGGAGCTTATCCCGAACATCCCG-TTCCAGATGCTACTGAGGGGGGCCAATGCTGTGGGCTACACCAACTACCCTGACAACGTGGTCTTCAA tgagatggctttttttgtaagacaggcactgggcttttttgcattcacagGACCACCTCCAGCTGGTTTCAGGGACATCCTTCTGCGAGAAGGACCAGAGGGCTTTGCTCGAGCAGTGCGGAATCACCATGGGCTGCTGTTGATGGACACAACGTTCAGGGATGCTCACCAGTCATTACTGGCCACTCGAGTGCGCACACATGATCTCAAGAAGATTGCACCCTATGTTGCCCACAACTTCAACAAGCTCTTCAGCATGGAGAACTGGGGAGGTGCCACATTTGATGTTGCAATGCACTTCCTGTATGAGTGCCCCTGGCGGCGGCTCCAGAAGCTGCGGAAGCTAATCCCAAATATCCCACTTCCAGATGCTACTCAGGGGGGCCAATGCTGTGGGCTATACCAACTATGCTGACAATGTTGTCTTCAAgtacttctgagtctgctcagaccacggcagtggacgccaagggtttttaa #### Pcx_ID565_14 --> 1 - 0 Original Alignment gTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCAC-ATCCTGTGCATTAAG agggagttacaggagtcagaaagatatcacttttccttccttgaactcaggTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGGGTCTTTGACTCCCTCAACTATTTGCCGAACATGCTGCTGGGTATGAAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACCGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCTCTCACCATCCTGTGCATTAAGgtgtgtgggccacacagtgtgtcactcttgatcataattcttgtccatta Alignment from CESAR gTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCAC-ATCCTGTGCATTAAG agggagttacaggagtcagaaagatatcacttttccttccttgaactcaggTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGGGTCTTTGACTCCCTCAACTATTTGCCGAACATGCTGCTGGGTATGAAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACCGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCTCTCACCATCCTGTGCATTAAGgtgtgtgggccacacagtgtgtcactcttgatcataattcacatacatcc Alignment from Spaln_aa2Genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCAC-ATCCTGTGCATTAAG agggagttacaggagtcagaaagatatcacttttccttccttgaactcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGGGTCTTTGACTCCCTCAACTATTTGCCGAACATGCTGCTGGGTATGAAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACCGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCTCTCACcATCCTGTGCATTAAGgtgtgtgggccacacagtgtgtcactcttgatcataattcttgtccatta Alignment from Spaln_nt2Genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCA-CATCCTGTGCATTAAG agggagttacaggagtcagaaagatatcacttttccttccttgaactcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGGGTCTTTGACTCCCTCAACTATTTGCCGAACATGCTGCTGGGTATGAAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACCGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCTCTCACCATCCTGTGCATTAAGgtgtgtgggccacacagtgtgtcactcttgatcataattcttgtccatta Alignment from Pairagon GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCA-CATCCTGTGCATTAAG agggagttacaggagtcagaaagatatcacttttccttccttgaactcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGGGTCTTTGACTCCCTCAACTATTTGCCGAACATGCTGCTGGGTATGAAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACCGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCTCTCACCATCCTGTGCATTAAGgtgtgtgggccacacagtgtgtcactcttgatcataattcttgtccatta Alignment from Exonerate_protein2genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCAC-ATCCTGTGCATTAAG agggagttacaggagtcagaaagatatcacttttccttccttgaactcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGGGTCTTTGACTCCCTCAACTATTTGCCGAACATGCTGCTGGGTATGAAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACCGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCTCTCACCATCCTGTGCATTAAGgtgtgtgggccacacagtgtgtcactcttgatcataattcttgtccatta Alignment from Exonerate_coding2genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCAC-ATCCTGTGCATTAAG agggagttacaggagtcagaaagatatcacttttccttccttgaactcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGGGTCTTTGACTCCCTCAACTATTTGCCGAACATGCTGCTGGGTATGAAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACCGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCTCTCACCATCCTGTGCATTAAGgtgtgtgggccacacagtgtgtcactcttgatcataattcttgtccatta Alignment from GeneWise GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCAC-ATCCTGTGCATTAAG agggagttacaggagtcagaaagatatcacttttccttccttgaactcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGGGTCTTTGACTCCCTCAACTATTTGCCGAACATGCTGCTGGGTATGAAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACCGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCTCTCACCATCCTGTGCATTAAGgtgtgtgggccacacagtgtgtcactcttgatcataattcttgtccatta #### Pcx_ID569_18 --> 0 - 0 Original Alignment GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGA-CCCAAAATTGCAGAGGAGTTTGAG aggtgcatcatggtgggaccggggcttatttctccatcccctggactcagGTGCTAAAGGACCTGCCAAGAATAGAAGGGCGGCCTGGAGCCTCCTTACCTCCCCTGAACCTGAAGGAACTGGAGAAGGACCTGATTGATAGACACGGGGAAGATGTGTCACAAGAGGATGTCCTCTCTGCAGCCATGTACCCATATGTCTTTACTCAATTCAAAGACTTCACAGCTACTTTCAGCCCCCTGGATAGCCTAAATACTCGTCTCTTTCTTCAAGGACCCCAAAATTGCAGAGGAATTTGAGgtcagaggctcctgtgtttgtgtctattcatccccagggcctctagtaat Alignment from CESAR GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCC-AAAATTGCAGAGGAGTTTGAG aggtgcatcatggtgggaccggggcttatttctccatcccctggactcagGTGCTAAAGGACCTGCCAAGAATAGAAGGGCGGCCTGGAGCCTCCTTACCTCCCCTGAACCTGAAGGAACTGGAGAAGGACCTGATTGATAGACACGGGGAAGATGTGTCACAAGAGGATGTCCTCTCTGCAGCCATGTACCCATATGTCTTTACTCAATTCAAAGACTTCACAGCTACTTTCAGCCCCCTGGATAGCCTAAATACTCGTCTCTTTCTTCAAGGACCCCAAAATTGCAGAGGAATTTGAGgtcagaggctcctgtgtttgtgtctattcatccccagggcctctagtaat Alignment from Spaln_aa2Genome GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGA-CCCAAAATTGCAGAGGAGTTTGAG aggtgcatcatggtgggaccggggcttatttctccatcccctggactcagGTGCTAAAGGACCTGCCAAGAATAGAAGGGCGGCCTGGAGCCTCCTTACCTCCCCTGAACCTGAAGGAACTGGAGAAGGACCTGATTGATAGACACGGGGAAGATGTGTCACAAGAGGATGTCCTCTCTGCAGCCATGTACCCATATGTCTTTACTCAATTCAAAGACTTCACAGCTACTTTCAGCCCCCTGGATAGCCTAAATACTCGTCTCTTTCTTCAAGGAcCCCAAAATTGCAGAGGAATTTGAGgtcagaggctcctgtgtttgtgtctattcatccccagggcctctagtaat Alignment from Spaln_nt2Genome GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCC-AAAATTGCAGAGGAGTTTGAG aggtgcatcatggtgggaccggggcttatttctccatcccctggactcagGTGCTAAAGGACCTGCCAAGAATAGAAGGGCGGCCTGGAGCCTCCTTACCTCCCCTGAACCTGAAGGAACTGGAGAAGGACCTGATTGATAGACACGGGGAAGATGTGTCACAAGAGGATGTCCTCTCTGCAGCCATGTACCCATATGTCTTTACTCAATTCAAAGACTTCACAGCTACTTTCAGCCCCCTGGATAGCCTAAATACTCGTCTCTTTCTTCAAGGACCCCAAAATTGCAGAGGAATTTGAGgtcagaggctcctgtgtttgtgtctattcatccccagggcctctagtaat Alignment from Pairagon ------------------------------------------------AGGTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGA-CCCAAAATTGCAGAGGAGTTTGAG AGGTGCATCATGGTGGGACCGGGGCTTATTTCTCCATCCCCTGGACTCAGGTGCTAAAGGACCTGCCAAGAATAGAAGGGCGGCCTGGAGCCTCCTTACCTCCCCTGAACCTGAAGGAACTGGAGAAGGACCTGATTGATAGACACGGGGAAGATGTGTCACAAGAGGATGTCCTCTCTGCAGCCATGTACCCATATGTCTTTACTCAATTCAAAGACTTCACAGCTACTTTCAGCCCCCTGGATAGCCTAAATACTCGTCTCTTTCTTCAAGGACCCCAAAATTGCAGAGGAATTTGAGgtcagaggctcctgtgtttgtgtctattcatccccagggcctctagtaat Alignment from Exonerate_protein2genome GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGA-CCCAAAATTGCAGAGGAGTTTGAG aggtgcatcatggtgggaccggggcttatttctccatcccctggactcagGTGCTAAAGGACCTGCCAAGAATAGAAGGGCGGCCTGGAGCCTCCTTACCTCCCCTGAACCTGAAGGAACTGGAGAAGGACCTGATTGATAGACACGGGGAAGATGTGTCACAAGAGGATGTCCTCTCTGCAGCCATGTACCCATATGTCTTTACTCAATTCAAAGACTTCACAGCTACTTTCAGCCCCCTGGATAGCCTAAATACTCGTCTCTTTCTTCAAGGACCCCAAAATTGCAGAGGAATTTGAGgtcagaggctcctgtgtttgtgtctattcatccccagggcctctagtaat Alignment from Exonerate_coding2genome GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGA-CCCAAAATTGCAGAGGAGTTTGAG aggtgcatcatggtgggaccggggcttatttctccatcccctggactcagGTGCTAAAGGACCTGCCAAGAATAGAAGGGCGGCCTGGAGCCTCCTTACCTCCCCTGAACCTGAAGGAACTGGAGAAGGACCTGATTGATAGACACGGGGAAGATGTGTCACAAGAGGATGTCCTCTCTGCAGCCATGTACCCATATGTCTTTACTCAATTCAAAGACTTCACAGCTACTTTCAGCCCCCTGGATAGCCTAAATACTCGTCTCTTTCTTCAAGGACCCCAAAATTGCAGAGGAATTTGAGgtcagaggctcctgtgtttgtgtctattcatccccagggcctctagtaat Alignment from GeneWise --------------------------------------------------GTGCTAAAGGACCTGCCAAGAATAGAGGGGCGGCCTGGAGCCTCCCTCCCTCCCCTGAACCTGAAGGAGCTGGAGAAGGACCTGATTGATAGGCATGGGGAGGAGGTGACCCCAGAGGACGTCCTCTCTGCAGCCATGTACCCTGATGTCTTTGCTCAATTCAAAGACTTCACGGCTACCTTCGGCCCCCTGGATAGCCTTAATACTCGTCTCTTTCTTCAAGGACCC-AAAATTGCAGAGGAGTTTGAG AGGTGCATCATGGTGGGACCGGGGCTTATTTCTCCATCCCCTGGACTCAGGTGCTAAAGGACCTGCCAAGAATAGAAGGGCGGCCTGGAGCCTCCTTACCTCCCCTGAACCTGAAGGAACTGGAGAAGGACCTGATTGATAGACACGGGGAAGATGTGTCACAAGAGGATGTCCTCTCTGCAGCCATGTACCCATATGTCTTTACTCAATTCAAAGACTTCACAGCTACTTTCAGCCCCCTGGATAGCCTAAATACTCGTCTCTTTCTTCAAGGACCCCAAAATTGCAGAGGAATTTGAGgtcagaggctcctgtgtttgtgtctattcatccccagggcctctagtaat #### Pdcd11_ID10116_10 --> 1 - 0 Original Alignment aTCAATTATTGCAGCTCCA-TTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG agcagccctatccatacactctgtagtcgctcgctgctttctctttccagaTCAATTATTGCAGCTCCACTTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAGgtgagcactgcagcagcccatggccttggaatccttttgataaacacatt Alignment from CESAR aTCAATTATTGCAGCTCCA-TTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG agcagccctatccatacactctgtagtcgctcgctgctttctctttccagaTCAATTATTGCAGCTCCACTTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAGgtgagcactgcagcagcccatggccttggaatccttttgataaacacatt Alignment from Spaln_aa2Genome ATCAATTATTGCAGCTCCA-TTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG agcagccctatccatacactctgtagtcgctcgctgctttctctttccagATCAATTATTGCAGCTCCAcTTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAGgtgagcactgcagcagcccatggccttggaatccttttgataaacacatt Alignment from Spaln_nt2Genome ATCAATTATTGCAGCTCCA-TTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG agcagccctatccatacactctgtagtcgctcgctgctttctctttccagATCAATTATTGCAGCTCCACTTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAGgtgagcactgcagcagcccatggccttggaatccttttgataaacacatt Alignment from Pairagon ATCAATTATTGCAGCTCCA-TTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG agcagccctatccatacactctgtagtcgctcgctgctttctctttccagATCAATTATTGCAGCTCCACTTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAGgtgagcactgcagcagcccatggccttggaatccttttgataaacacatt Alignment from Exonerate_protein2genome ATCAATTATTGCAGCTCCA-TTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG agcagccctatccatacactctgtagtcgctcgctgctttctctttccagATCAATTATTGCAGCTCCACTTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAGgtgagcactgcagcagcccatggccttggaatccttttgataaacacatt Alignment from Exonerate_coding2genome ATCAATTATTGCAGCTCCA-TTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG agcagccctatccatacactctgtagtcgctcgctgctttctctttccagATCAATTATTGCAGCTCCACTTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAGgtgagcactgcagcagcccatggccttggaatccttttgataaacacatt Alignment from GeneWise ATCAATTATTGCAGCTCCA-TTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAG agcagccctatccatacactctgtagtcgctcgctgctttctctttccagATCAATTATTGCAGCTCCACTTCCTTAGATATCATGACATCAAAATAGGGACAGTAGTAAAGgtgagcactgcagcagcccatggccttggaatccttttgataaacacatt #### Pdcd11_ID10119_13 --> 0 - 0 Original Alignment GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTC-AGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcctgaaggcctactgccacaaggaggtagcagcaagactgtttttccagGTGGTAAAGGTGGCTGTGCTAAGCTGTGAGCCTTCCAAGGAAAGGATGCTCCTCTCCTTCCAGGTTGCTGAGTGACTCACGGCCGAAAGATCCAGGTGTTGAGAGCAGTCAGAAGAAAACAGAAGCTGTGCGCATTGGGCAGgtaagtaggcaatgacctcatctaatggtgacagtgtttggagaggaagg Alignment from CESAR GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTC-AGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcctgaaggcctactgccacaaggaggtagcagcaagactgtttttccagGTGGTAAAGGTGGCTGTGCTAAGCTGTGAGCCTTCCAAGGAAAGGATGCTCCTCTCCTTCCAGGTTGCTGAGTGACTCACGGCCGAAAGATCCAGGTGTTGAGAGCAGTCAGAAGAAAACAGAAGCTGTGCGCATTGGGCAGgtaagtaggcaatgacctcatctaatggtgacagtgtttggagaggaagg Alignment from Spaln_aa2Genome GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTC-AGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcctgaaggcctactgccacaaggaggtagcagcaagactgtttttccagGTGGTAAAGGTGGCTGTGCTAAGCTGTGAGCCTTCCAAGGAAAGGATGCTCCTCTCCTTCcAGGTTGCTGAGTGACTCACGGCCGAAAGATCCAGGTGTTGAGAGCAGTCAGAAGAAAACAGAAGCTGTGCGCATTGGGCAGgtaagtaggcaatgacctcatctaatggtgacagtgtttggagaggaagg Alignment from Spaln_nt2Genome GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTC-AGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcctgaaggcctactgccacaaggaggtagcagcaagactgtttttccagGTGGTAAAGGTGGCTGTGCTAAGCTGTGAGCCTTCCAAGGAAAGGATGCTCCTCTCCTTCCAGGTTGCTGAGTGACTCACGGCCGAAAGATCCAGGTGTTGAGAGCAGTCAGAAGAAAACAGAAGCTGTGCGCATTGGGCAGgtaagtaggcaatgacctcatctaatggtgacagtgtttggagaggaagg Alignment from Pairagon GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTT-CAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcctgaaggcctactgccacaaggaggtagcagcaagactgtttttccagGTGGTAAAGGTGGCTGTGCTAAGCTGTGAGCCTTCCAAGGAAAGGATGCTCCTCTCCTTCCAGGTTGCTGAGTGACTCACGGCCGAAAGATCCAGGTGTTGAGAGCAGTCAGAAGAAAACAGAAGCTGTGCGCATTGGGCAGgtaagtaggcaatgacctcatctaatggtgacagtgtttggagaggaagg Alignment from Exonerate_protein2genome GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTC-AGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcctgaaggcctactgccacaaggaggtagcagcaagactgtttttccagGTGGTAAAGGTGGCTGTGCTAAGCTGTGAGCCTTCCAAGGAAAGGATGCTCCTCTCCTTCCAGGTTGCTGAGTGACTCACGGCCGAAAGATCCAGGTGTTGAGAGCAGTCAGAAGAAAACAGAAGCTGTGCGCATTGGGCAGgtaagtaggcaatgacctcatctaatggtgacagtgtttggagaggaagg Alignment from Exonerate_coding2genome GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTC-AGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcctgaaggcctactgccacaaggaggtagcagcaagactgtttttccagGTGGTAAAGGTGGCTGTGCTAAGCTGTGAGCCTTCCAAGGAAAGGATGCTCCTCTCCTTCCAGGTTGCTGAGTGACTCACGGCCGAAAGATCCAGGTGTTGAGAGCAGTCAGAAGAAAACAGAAGCTGTGCGCATTGGGCAGgtaagtaggcaatgacctcatctaatggtgacagtgtttggagaggaagg Alignment from GeneWise GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTC-AGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcctgaaggcctactgccacaaggaggtagcagcaagactgtttttccagGTGGTAAAGGTGGCTGTGCTAAGCTGTGAGCCTTCCAAGGAAAGGATGCTCCTCTCCTTCCAGGTTGCTGAGTGACTCACGGCCGAAAGATCCAGGTGTTGAGAGCAGTCAGAAGAAAACAGAAGCTGTGCGCATTGGGCAGgtaagtaggcaatgacctcatctaatggtgacagtgtttggagaggaagg #### Pdcd11_ID10134_28 --> 1 - 0 Original Alignment cGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAG-CGCCAGGAGTCTGAGAGCGAGCAG tggtgtgcagacaccttctgccccatctcacgtgtacattttcattacagcGTAAATCCCATGAAGAACCTGATAGAGCTGTCCCTCCTTCCCAGTGACACTGGGAGGCCGGATGTATTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGGGGGCCAAAAAAAGAAGGAGAAGAACCAGAAGAGACGGGATGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCCGGCATGAATCTGAGAGTGAGCAGgtaaggaccactccccgggcagtattgcctcatctcacccattagtgtag Alignment from CESAR cGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAG-CGCCAGGAGTCTGAGAGCGAGCAG tggtgtgcagacaccttctgccccatctcacgtgtacattttcattacagcGTAAATCCCATGAAGAACCTGATAGAGCTGTCCCTCCTTCCCAGTGACACTGGGAGGCCGGATGTATTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGGGGGCCAAAAAAAGAAGGAGAAGAACCAGAAGAGACGGGATGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCCGGCATGAATCTGAGAGTGAGCAGgtaaggaccactccccgggcagtattgcctcatctcacccattagtgtag Alignment from Spaln_aa2Genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAG-CGCCAGGAGTCTGAGAGCGAGCAG tggtgtgcagacaccttctgccccatctcacgtgtacattttcattacagCGTAAATCCCATGAAGAACCTGATAGAGCTGTCCCTCCTTCCCAGTGACACTGGGAGGCCGGATGTATTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGGGGGCCAAAAAAAGAAGGAGAAGAACCAGAAGAGACGGGATGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGcCGGCATGAATCTGAGAGTGAGCAGgtaaggaccactccccgggcagtattgcctcatctcacccattagtgtag Alignment from Spaln_nt2Genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGC-GCCAGGAGTCTGAGAGCGAGCAG tggtgtgcagacaccttctgccccatctcacgtgtacattttcattacagCGTAAATCCCATGAAGAACCTGATAGAGCTGTCCCTCCTTCCCAGTGACACTGGGAGGCCGGATGTATTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGGGGGCCAAAAAAAGAAGGAGAAGAACCAGAAGAGACGGGATGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCCGGCATGAATCTGAGAGTGAGCAGgtaaggaccactccccgggcagtattgcctcatctcacccattagtgtag Alignment from Pairagon CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAG-CGCCAGGAGTCTGAGAGCGAGCAG tggtgtgcagacaccttctgccccatctcacgtgtacattttcattacagCGTAAATCCCATGAAGAACCTGATAGAGCTGTCCCTCCTTCCCAGTGACACTGGGAGGCCGGATGTATTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGGGGGCCAAAAAAAGAAGGAGAAGAACCAGAAGAGACGGGATGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCCGGCATGAATCTGAGAGTGAGCAGgtaaggaccactccccgggcagtattgcctcatctcacccattagtgtag Alignment from Exonerate_protein2genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAG-CGCCAGGAGTCTGAGAGCGAGCAG tggtgtgcagacaccttctgccccatctcacgtgtacattttcattacagCGTAAATCCCATGAAGAACCTGATAGAGCTGTCCCTCCTTCCCAGTGACACTGGGAGGCCGGATGTATTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGGGGGCCAAAAAAAGAAGGAGAAGAACCAGAAGAGACGGGATGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCCGGCATGAATCTGAGAGTGAGCAGgtaaggaccactccccgggcagtattgcctcatctcacccattagtgtag Alignment from Exonerate_coding2genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAG-CGCCAGGAGTCTGAGAGCGAGCAG tggtgtgcagacaccttctgccccatctcacgtgtacattttcattacagCGTAAATCCCATGAAGAACCTGATAGAGCTGTCCCTCCTTCCCAGTGACACTGGGAGGCCGGATGTATTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGGGGGCCAAAAAAAGAAGGAGAAGAACCAGAAGAGACGGGATGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCCGGCATGAATCTGAGAGTGAGCAGgtaaggaccactccccgggcagtattgcctcatctcacccattagtgtag Alignment from GeneWise CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGG-GAGCGCCAGGAGTCTGAGAGCGAGCAG tggtgtgcagacaccttctgccccatctcacgtgtacattttcattacagCGTAAATCCCATGAAGAACCTGATAGAGCTGTCCCTCCTTCCCAGTGACACTGGGAGGCCGGATGTATTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGGGGAGCGGAGGGGCTGAGGGGGGCCAAAAAAAGAAGGAGAAGAACCAGAAGAGACGGGATGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCCGGCATGAATCTGAGAGTGAGCAGgtaaggaccactccccgggcagtattgcctcatctcacccattagtgtag #### Pdcd11_ID10135_29 --> 0 - 0 Original Alignment GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAG-CCGAAGCTGCCACCCAGG tgctctcagggtgaggggaaaccccccatgtctctctccatggttcccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGACAGTGGTGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCCAAAGCTGCCACCCAGGgtaaggtttgctgggtgcgaactggggaatagctttggtgaagagctcct Alignment from CESAR GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAG-CCGAAGCTGCCACCCAGG tgctctcagggtgaggggaaaccccccatgtctctctccatggttcccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGACAGTGGTGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCCAAAGCTGCCACCCAGGgtaaggtttgctgggtgcgaactggggaatagctttggtgaagagctcct Alignment from Spaln_aa2Genome GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGGGGGAAG tgctctcagggtgaggggaaaccccccatgtctctctccatggttcccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGACAGTGGTGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCCAAAGCTGCCACCCAGGGTAAGgtttgctgggtgcgaactggggaatagctttggtgaagagctcct Alignment from Spaln_nt2Genome GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGA------AGTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAA-GCTGCCACCCAGG tgctctcagggtgaggggaaaccccccatgtctctctccatggttcccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGACAGTGGTGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCCAAAGCTGCCACCCAGGgtaaggtttgctgggtgcgaactggggaatagctttggtgaagagctcct Alignment from Pairagon GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGA------AGTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAG-CCGAAGCTGCCACCCAGG tgctctcagggtgaggggaaaccccccatgtctctctccatggttcccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGACAGTGGTGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCCAAAGCTGCCACCCAGGgtaaggtttgctgggtgcgaactggggaatagctttggtgaagagctcct Alignment from Exonerate_protein2genome GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAG-CCGAAGCTGCCACCCAGG tgctctcagggtgaggggaaaccccccatgtctctctccatggttcccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGACAGTGGTGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCCAAAGCTGCCACCCAGGgtaaggtttgctgggtgcgaactggggaatagctttggtgaagagctcct Alignment from Exonerate_coding2genome GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAG-CCGAAGCTGCCACCCAGG tgctctcagggtgaggggaaaccccccatgtctctctccatggttcccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGACAGTGGTGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCCAAAGCTGCCACCCAGGgtaaggtttgctgggtgcgaactggggaatagctttggtgaagagctcct Alignment from GeneWise GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGGGGGAAG tgctctcagggtgaggggaaaccccccatgtctctctccatggttcccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGACAGTGGTGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCCAAAGCTGCCACCCAGGGTAAGgtttgctgggtgcgaactggggaatagctttggtgaagagctcct #### Pdcd11_ID10136_30 --> 0 - 0 Original Alignment GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTC-TCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtggggccagaacaacctcacagctaatcctgtttgtctctcagGGGAAGAAGACGAAATCTACAGAGGTGCCCCGGCTGCATCTCCTCTTCAGGCTTTCTCTGGGATGTGGGGCTTGACTCTCTGACCCCAGCCTTGCCACTCCGGGAAGAAAGCTCAGACAGCGAGGATGAGCAGCCACACCAAGCTAAGgtaagttgtgttccaatgcactgcaggtcttccaggaacacttattacca Alignment from CESAR GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTC-TCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtggggccagaacaacctcacagctaatcctgtttgtctctcagGGGAAGAAGACGAAATCTACAGAGGTGCCCCGGCTGCATCTCCTCTTCAGGCTTTCTCTGGGATGTGGGGCTTGACTCTCTGACCCCAGCCTTGCCACTCCGGGAAGAAAGCTCAGACAGCGAGGATGAGCAGCCACACCAAGCTAAGgtaagttgtgttccaatgcactgcaggtcttccaggaacacttattacca Alignment from Spaln_aa2Genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTC-TCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtggggccagaacaacctcacagctaatcctgtttgtctctcagGGGAAGAAGACGAAATCTACAGAGGTGCCCCGGCTGCATCTCcTCTTCAGGCTTTCTCTGGGATGTGGGGCTTGACTCTCTGACCCCAGCCTTGCCACTCCGGGAAGAAAGCTCAGACAGCGAGGATGAGCAGCCACACCAAGCTAAGgtaagttgtgttccaatgcactgcaggtcttccaggaacacttattacca Alignment from Spaln_nt2Genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCT-CTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtggggccagaacaacctcacagctaatcctgtttgtctctcagGGGAAGAAGACGAAATCTACAGAGGTGCCCCGGCTGCATCTCCTCTTCAGGCTTTCTCTGGGATGTGGGGCTTGACTCTCTGACCCCAGCCTTGCCACTCCGGGAAGAAAGCTCAGACAGCGAGGATGAGCAGCCACACCAAGCTAAGgtaagttgtgttccaatgcactgcaggtcttccaggaacacttattacca Alignment from Pairagon GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCT-CTCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtggggccagaacaacctcacagctaatcctgtttgtctctcagGGGAAGAAGACGAAATCTACAGAGGTGCCCCGGCTGCATCTCCTCTTCAGGCTTTCTCTGGGATGTGGGGCTTGACTCTCTGACCCCAGCCTTGCCACTCCGGGAAGAAAGCTCAGACAGCGAGGATGAGCAGCCACACCAAGCTAAGgtaagttgtgttccaatgcactgcaggtcttccaggaacacttattacca Alignment from Exonerate_protein2genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTC-TCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtggggccagaacaacctcacagctaatcctgtttgtctctcagGGGAAGAAGACGAAATCTACAGAGGTGCCCCGGCTGCATCTCCTCTTCAGGCTTTCTCTGGGATGTGGGGCTTGACTCTCTGACCCCAGCCTTGCCACTCCGGGAAGAAAGCTCAGACAGCGAGGATGAGCAGCCACACCAAGCTAAGgtaagttgtgttccaatgcactgcaggtcttccaggaacacttattacca Alignment from Exonerate_coding2genome GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTC-TCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtggggccagaacaacctcacagctaatcctgtttgtctctcagGGGAAGAAGACGAAATCTACAGAGGTGCCCCGGCTGCATCTCCTCTTCAGGCTTTCTCTGGGATGTGGGGCTTGACTCTCTGACCCCAGCCTTGCCACTCCGGGAAGAAAGCTCAGACAGCGAGGATGAGCAGCCACACCAAGCTAAGgtaagttgtgttccaatgcactgcaggtcttccaggaacacttattacca Alignment from GeneWise GGGAAGCAGACAAAATCCACAGAGGTGCCCCGGCTGCATCTC-TCTTCAGGCTTCCTTTGGGATGTGGGGCTTGACTCTCTGACTCCAGCCTTGCCACTCCGAGAAGAGAGCTCAGACAGCGAGGATGAGCAGCCGCACCAAGCTAAG gggctggtggggccagaacaacctcacagctaatcctgtttgtctctcagGGGAAGAAGACGAAATCTACAGAGGTGCCCCGGCTGCATCTCCTCTTCAGGCTTTCTCTGGGATGTGGGGCTTGACTCTCTGACCCCAGCCTTGCCACTCCGGGAAGAAAGCTCAGACAGCGAGGATGAGCAGCCACACCAAGCTAAGgtaagttgtgttccaatgcactgcaggtcttccaggaacacttattacca #### Pdcd11_ID10139_33 --> 0 - 1 Original Alignment GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCT-GGG------GCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAc acttcatcgacatagtgccacactctaatgatgcctgtcacatttggcagGAAGCTGGAGAGCTGTATAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGTATCAAATATGGTGCCTTTGGTTTGGGAAGGAGTCAGGCTCGGGGCTGGAGTCAGTCACCGTGTCCTACAGCGAGCCCCGGAGTGCTTGCCGGCCAAAGAAcgtgagttcttttcctggcacctgatcccactcaatttgatacatatttag Alignment from CESAR GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCT-GGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAc acttcatcgacatagtgccacactctaatgatgcctgtcacatttggcagGAAGCTGGAGAGCTGTATAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGTATCAAATATGGTGCCTTTGGTTTGGGAAGGAGTCAGGCTCGGGGCTGGAGTCAGTCACCGTGTCCTACAGCGAGCCCCGGAGTGCTTGCCGGCCAAAGAAcgtgagttcttttcctggcacctgatcccactcaatttgatacatatttag Alignment from Spaln_aa2Genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCT-------GGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC acttcatcgacatagtgccacactctaatgatgcctgtcacatttggcagGAAGCTGGAGAGCTGTATAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGTATCAAATATGGTGCCTTTGGTTTGGGAAGGAGTCAGGCTCGGGGCtGGAGTCAGTCACCGTGTCCTACAGCGAGCCCCGGAGTGCTTGCCGGCCAAAGAACgtgagttcttttcctggcacctgatcccactcaatttgatacatatttag Alignment from Spaln_nt2Genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCT-GGGGC------CAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC acttcatcgacatagtgccacactctaatgatgcctgtcacatttggcagGAAGCTGGAGAGCTGTATAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGTATCAAATATGGTGCCTTTGGTTTGGGAAGGAGTCAGGCTCGGGGCTGGAGTCAGTCACCGTGTCCTACAGCGAGCCCCGGAGTGCTTGCCGGCCAAAGAACgtgagttcttttcctggcacctgatcccactcaatttgatacatatttag Alignment from Pairagon GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCA-------GGCTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC acttcatcgacatagtgccacactctaatgatgcctgtcacatttggcagGAAGCTGGAGAGCTGTATAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGTATCAAATATGGTGCCTTTGGTTTGGGAAGGAGTCAGGCTCGGGGCTGGAGTCAGTCACCGTGTCCTACAGCGAGCCCCGGAGTGCTTGCCGGCCAAAGAACgtgagttcttttcctggcacctgatcccactcaatttgatacatatttag Alignment from Exonerate_protein2genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAG-------GCTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC acttcatcgacatagtgccacactctaatgatgcctgtcacatttggcagGAAGCTGGAGAGCTGTATAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGTATCAAATATGGTGCCTTTGGTTTGGGAAGGAGTCAGGCTCGGGGCTGGAGTCAGTCACCGTGTCCTACAGCGAGCCCCGGAGTGCTTGCCGGCCAAAGAACgtgagttcttttcctggcacctgatcccactcaatttgatacatatttag Alignment from Exonerate_coding2genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAG-------GCTGGGGCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC acttcatcgacatagtgccacactctaatgatgcctgtcacatttggcagGAAGCTGGAGAGCTGTATAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGTATCAAATATGGTGCCTTTGGTTTGGGAAGGAGTCAGGCTCGGGGCTGGAGTCAGTCACCGTGTCCTACAGCGAGCCCCGGAGTGCTTGCCGGCCAAAGAACgtgagttcttttcctggcacctgatcccactcaatttgatacatatttag Alignment from GeneWise GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAG-GCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC acttcatcgacatagtgccacactctaatgatgcctgtcacatttggcagGAAGCTGGAGAGCTGTATAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGTATCAAATATGGTGCCTTTGGTTTGGGAAGGAGTCAGGCTCGGGGCTGGAGTCAGTCACCGTGTCCTACAGCGAGCCCCGGAGTGCTTGCCGGCCAAAGAACgtgagttcttttcctggcacctgatcccactcaatttgatacatatttag #### Pdcd11_ID10140_34 --> 2 - 2 Original Alignment atGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTAC-ATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCag cccaatcagccactctgggggtcttgccttttttgctctctccgcatcagatGTGGATGTGATTGTCAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGACGTGGAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGCGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACCATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCaggtaagttcaacaacagggctcattgcaatagagtgaggggtgggaagaga Alignment from CESAR atGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTAC-ATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCag cccaatcagccactctgggggtcttgccttttttgctctctccgcatcagatGTGGATGTGATTGTCAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGACGTGGAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGCGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACCATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCaggtaagttcaacaacagggctcattgcaatagagtgaggggtgggaagaga Alignment from Spaln_aa2Genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTAC-ATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cccaatcagccactctgggggtcttgccttttttgctctctccgcatcagATGTGGATGTGATTGTCAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGACGTGGAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGCGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACcATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCAGgtaagttcaacaacagggctcattgcaatagagtgaggggtgggaagaga Alignment from Spaln_nt2Genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTA-CATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cccaatcagccactctgggggtcttgccttttttgctctctccgcatcagATGTGGATGTGATTGTCAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGACGTGGAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGCGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACCATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCAGgtaagttcaacaacagggctcattgcaatagagtgaggggtgggaagaga Alignment from Pairagon ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTA-CATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cccaatcagccactctgggggtcttgccttttttgctctctccgcatcagATGTGGATGTGATTGTCAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGACGTGGAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGCGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACCATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCAGgtaagttcaacaacagggctcattgcaatagagtgaggggtgggaagaga Alignment from Exonerate_protein2genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTAC-ATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cccaatcagccactctgggggtcttgccttttttgctctctccgcatcagATGTGGATGTGATTGTCAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGACGTGGAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGCGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACCATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCAGgtaagttcaacaacagggctcattgcaatagagtgaggggtgggaagaga Alignment from Exonerate_coding2genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTAC-ATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cccaatcagccactctgggggtcttgccttttttgctctctccgcatcagATGTGGATGTGATTGTCAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGACGTGGAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGCGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACCATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCAGgtaagttcaacaacagggctcattgcaatagagtgaggggtgggaagaga Alignment from GeneWise ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTAC-ATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cccaatcagccactctgggggtcttgccttttttgctctctccgcatcagATGTGGATGTGATTGTCAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGACGTGGAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGCGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACCATTGACATGACCATCAAGCACGGCAGCCATACAGCAGTCAGgtaagttcaacaacagggctcattgcaatagagtgaggggtgggaagaga #### Pdcd4_ID11402_9 --> 0 - 0 Original Alignment GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACC-ATAGACCAAATGAAAAGA gataagttgtttaccaaaggtttacttaccagtctccctcttgcttgcagGCCATTGTGATGGTGTTAGAGTCAACCGGAGAGAGTGCATTCAAGATGATCTTAGATTTATTTAAATCCCTATGGAAGTCTTCTACGATCACCCATAGACCAAATGAAACGAgtaagaatgacattattttgaatgcttctaaaaagtctatgtctattcta Alignment from CESAR GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACC-ATAGACCAAATGAAAAGA gataagttgtttaccaaaggtttacttaccagtctccctcttgcttgcagGCCATTGTGATGGTGTTAGAGTCAACCGGAGAGAGTGCATTCAAGATGATCTTAGATTTATTTAAATCCCTATGGAAGTCTTCTACGATCACCCATAGACCAAATGAAACGAgtaagaatgacattattttgaatgcttctaaaaagtctatgtctattcta Alignment from Spaln_aa2Genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACC-ATAGACCAAATGAAAAGA gataagttgtttaccaaaggtttacttaccagtctccctcttgcttgcagGCCATTGTGATGGTGTTAGAGTCAACCGGAGAGAGTGCATTCAAGATGATCTTAGATTTATTTAAATCCCTATGGAAGTCTTCTACGATCACCcATAGACCAAATGAAACGAgtaagaatgacattattttgaatgcttctaaaaagtctatgtctattcta Alignment from Spaln_nt2Genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTAC-CATAGACCAAATGAAAAGA gataagttgtttaccaaaggtttacttaccagtctccctcttgcttgcagGCCATTGTGATGGTGTTAGAGTCAACCGGAGAGAGTGCATTCAAGATGATCTTAGATTTATTTAAATCCCTATGGAAGTCTTCTACGATCACCCATAGACCAAATGAAACGAgtaagaatgacattattttgaatgcttctaaaaagtctatgtctattcta Alignment from Pairagon GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTA-CCATAGACCAAATGAAAAGA gataagttgtttaccaaaggtttacttaccagtctccctcttgcttgcagGCCATTGTGATGGTGTTAGAGTCAACCGGAGAGAGTGCATTCAAGATGATCTTAGATTTATTTAAATCCCTATGGAAGTCTTCTACGATCACCCATAGACCAAATGAAACGAgtaagaatgacattattttgaatgcttctaaaaagtctatgtctattcta Alignment from Exonerate_protein2genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACC-ATAGACCAAATGAAAAGA gataagttgtttaccaaaggtttacttaccagtctccctcttgcttgcagGCCATTGTGATGGTGTTAGAGTCAACCGGAGAGAGTGCATTCAAGATGATCTTAGATTTATTTAAATCCCTATGGAAGTCTTCTACGATCACCCATAGACCAAATGAAACGAgtaagaatgacattattttgaatgcttctaaaaagtctatgtctattcta Alignment from Exonerate_coding2genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACC-ATAGACCAAATGAAAAGA gataagttgtttaccaaaggtttacttaccagtctccctcttgcttgcagGCCATTGTGATGGTGTTAGAGTCAACCGGAGAGAGTGCATTCAAGATGATCTTAGATTTATTTAAATCCCTATGGAAGTCTTCTACGATCACCCATAGACCAAATGAAACGAgtaagaatgacattattttgaatgcttctaaaaagtctatgtctattcta Alignment from GeneWise GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACC-ATAGACCAAATGAAAAGA gataagttgtttaccaaaggtttacttaccagtctccctcttgcttgcagGCCATTGTGATGGTGTTAGAGTCAACCGGAGAGAGTGCATTCAAGATGATCTTAGATTTATTTAAATCCCTATGGAAGTCTTCTACGATCACCCATAGACCAAATGAAACGAgtaagaatgacattattttgaatgcttctaaaaagtctatgtctattcta #### Pde6c_ID7536_6 --> 0 - 2 Original Alignment GAAATCATCTTCTATAAAATCATCGATTAC-ATTTTACATGGAAAAGAAGAGATCAACGTGATTcc ataccttctatgcaaattattattgcatccttgtgacctctttcatttagGAGATCATATTCTACAAAATTACTGATTACCATTTTGCATGGCAAAGAAGAAATCAATGTGATTccgtgagtggtccctggaagcaggcttgcctctggaactctggcctgatcca Alignment from CESAR GAAATCATCTTCTATAAAATCATCGATTAC-ATTTTACATGGAAAAGAAGAGATCAACGTGATTcc ataccttctatgcaaattattattgcatccttgtgacctctttcatttagGAGATCATATTCTACAAAATTACTGATTACCATTTTGCATGGCAAAGAAGAAATCAATGTGATTccgtgagtggtccctggaagcaggcttgcctctggaactctggcctgatcca Alignment from Spaln_aa2Genome GAAATCATCTTCTATAAAATCATCGATTAC-ATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ataccttctatgcaaattattattgcatccttgtgacctctttcatttagGAGATCATATTCTACAAAATTACTGATTACcATTTTGCATGGCAAAGAAGAAATCAATGTGATTCCgtgagtggtccctggaagcaggcttgcctctggaactctggcctgatcca Alignment from Spaln_nt2Genome GAAATCATCTTCTATAAAATCATCGATTAC-ATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ataccttctatgcaaattattattgcatccttgtgacctctttcatttagGAGATCATATTCTACAAAATTACTGATTACCATTTTGCATGGCAAAGAAGAAATCAATGTGATTCCgtgagtggtccctggaagcaggcttgcctctggaactctggcctgatcca Alignment from Pairagon GAAATCATCTTCTATAAAATCATCGATTA-CATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ataccttctatgcaaattattattgcatccttgtgacctctttcatttagGAGATCATATTCTACAAAATTACTGATTACCATTTTGCATGGCAAAGAAGAAATCAATGTGATTCCgtgagtggtccctggaagcaggcttgcctctggaactctggcctgatcca Alignment from Exonerate_protein2genome GAAATCATCTTCTATAAAATCATCGATTAC-ATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ataccttctatgcaaattattattgcatccttgtgacctctttcatttagGAGATCATATTCTACAAAATTACTGATTACCATTTTGCATGGCAAAGAAGAAATCAATGTGATTCCgtgagtggtccctggaagcaggcttgcctctggaactctggcctgatcca Alignment from Exonerate_coding2genome GAAATCATCTTCTATAAAATCATCGATTAC-ATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ataccttctatgcaaattattattgcatccttgtgacctctttcatttagGAGATCATATTCTACAAAATTACTGATTACCATTTTGCATGGCAAAGAAGAAATCAATGTGATTCCgtgagtggtccctggaagcaggcttgcctctggaactctggcctgatcca Alignment from GeneWise GAAATCATCTTCTATAAAATCATCGATTAC-ATTTTACATGGAAAAGAAGAGATCAACGTGATTCC ataccttctatgcaaattattattgcatccttgtgacctctttcatttagGAGATCATATTCTACAAAATTACTGATTACCATTTTGCATGGCAAAGAAGAAATCAATGTGATTCCgtgagtggtccctggaagcaggcttgcctctggaactctggcctgatcca #### Pde6c_ID7543_13 --> 0 - 0 Original Alignment GTTCTTACAAGGTGGATGTACACAGTCCGG-AAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tgttgtgtgtcatctcaagcatgaatgactgacccattcttcctttttagATTCTTACAAGGTGGATGTACACAGTCCGACAAGGGGTACCGACCTGCCACCTACCATAACTGGCGGCATGGATCCAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtgaggactgatgcaattagaagtcgttataactctgaatgctaccctcc Alignment from CESAR GTTCTTACAAGGTGGATGTACACAGTCCGG-AAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tgttgtgtgtcatctcaagcatgaatgactgacccattcttcctttttagATTCTTACAAGGTGGATGTACACAGTCCGACAAGGGGTACCGACCTGCCACCTACCATAACTGGCGGCATGGATCCAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtgaggactgatgcaattagaagtcgttataactctgaatgctaccctcc Alignment from Spaln_aa2Genome GTTCTTACAAGGTGGATGTACACAGTCCGG-AAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tgttgtgtgtcatctcaagcatgaatgactgacccattcttcctttttagATTCTTACAAGGTGGATGTACACAGTCCGAcAAGGGGTACCGACCTGCCACCTACCATAACTGGCGGCATGGATCCAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtgaggactgatgcaattagaagtcgttataactctgaatgctaccctcc Alignment from Spaln_nt2Genome GTTCTTACAAGGTGGATGTACACAGTCCGGA-AAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tgttgtgtgtcatctcaagcatgaatgactgacccattcttcctttttagATTCTTACAAGGTGGATGTACACAGTCCGACAAGGGGTACCGACCTGCCACCTACCATAACTGGCGGCATGGATCCAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtgaggactgatgcaattagaagtcgttataactctgaatgctaccctcc Alignment from Pairagon GTTCTTACAAGGTGGATGTACACAGTCCGG-AAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tgttgtgtgtcatctcaagcatgaatgactgacccattcttcctttttagATTCTTACAAGGTGGATGTACACAGTCCGACAAGGGGTACCGACCTGCCACCTACCATAACTGGCGGCATGGATCCAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtgaggactgatgcaattagaagtcgttataactctgaatgctaccctcc Alignment from Exonerate_protein2genome GTTCTTACAAGGTGGATGTACACAGTCCGG-AAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tgttgtgtgtcatctcaagcatgaatgactgacccattcttcctttttagATTCTTACAAGGTGGATGTACACAGTCCGACAAGGGGTACCGACCTGCCACCTACCATAACTGGCGGCATGGATCCAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtgaggactgatgcaattagaagtcgttataactctgaatgctaccctcc Alignment from Exonerate_coding2genome GTTCTTACAAGGTGGATGTACACAGTCCGG-AAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tgttgtgtgtcatctcaagcatgaatgactgacccattcttcctttttagATTCTTACAAGGTGGATGTACACAGTCCGACAAGGGGTACCGACCTGCCACCTACCATAACTGGCGGCATGGATCCAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtgaggactgatgcaattagaagtcgttataactctgaatgctaccctcc Alignment from GeneWise GTTCTTACAAGGTGGATGTACACAGTCCGG-AAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCACGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tgttgtgtgtcatctcaagcatgaatgactgacccattcttcctttttagATTCTTACAAGGTGGATGTACACAGTCCGACAAGGGGTACCGACCTGCCACCTACCATAACTGGCGGCATGGATCCAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtgaggactgatgcaattagaagtcgttataactctgaatgctaccctcc #### Pde6c_ID7550_20 --> 0 - 0 Original Alignment CCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAA-GTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG ctccccaaactctcaggaaacctcttaagatcatctatatttctgaccagCCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAACGTGGGATTTATTGATTTTGTTTGTACTTTCGTGTACAAGgtgccgtacctgaatgaaatatagcttaacttggtttcattgacaagtta Alignment from CESAR CCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAA-GTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG ctccccaaactctcaggaaacctcttaagatcatctatatttctgaccagCCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAACGTGGGATTTATTGATTTTGTTTGTACTTTCGTGTACAAGgtgccgtacctgaatgaaatatagcttaacttggtttcattgacaagtta Alignment from Spaln_aa2Genome CCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAAGTGGGA-TTTATTGATTTTGTTTGTACTTTCGTATATAAG ctccccaaactctcaggaaacctcttaagatcatctatatttctgaccagCCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAACGTGGGaTTTATTGATTTTGTTTGTACTTTCGTGTACAAGgtgccgtacctgaatgaaatatagcttaacttggtttcattgacaagtta Alignment from Spaln_nt2Genome CCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAA-GTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG ctccccaaactctcaggaaacctcttaagatcatctatatttctgaccagCCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAACGTGGGATTTATTGATTTTGTTTGTACTTTCGTGTACAAGgtgccgtacctgaatgaaatatagcttaacttggtttcattgacaagtta Alignment from Pairagon CCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAA-GTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG ctccccaaactctcaggaaacctcttaagatcatctatatttctgaccagCCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAACGTGGGATTTATTGATTTTGTTTGTACTTTCGTGTACAAGgtgccgtacctgaatgaaatatagcttaacttggtttcattgacaagtta Alignment from Exonerate_protein2genome CCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAA-GTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG ctccccaaactctcaggaaacctcttaagatcatctatatttctgaccagCCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAACGTGGGATTTATTGATTTTGTTTGTACTTTCGTGTACAAGgtgccgtacctgaatgaaatatagcttaacttggtttcattgacaagtta Alignment from Exonerate_coding2genome CCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAA-GTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG ctccccaaactctcaggaaacctcttaagatcatctatatttctgaccagCCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAACGTGGGATTTATTGATTTTGTTTGTACTTTCGTGTACAAGgtgccgtacctgaatgaaatatagcttaacttggtttcattgacaagtta Alignment from GeneWise CCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAA-GTGGGATTTATTGATTTTGTTTGTACTTTCGTATATAAG ctccccaaactctcaggaaacctcttaagatcatctatatttctgaccagCCTATGATGGACAGAAGCAAAAAGGATGAACTCCCGAAACTTCAACGTGGGATTTATTGATTTTGTTTGTACTTTCGTGTACAAGgtgccgtacctgaatgaaatatagcttaacttggtttcattgacaagtta #### Peo1_ID9266_3 --> 1 - 2 Original Alignment gTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTC-ATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACag tcaatagtgtcctgagagtactgactttgcccccttttgtcttgttttaggTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTATGACATCTGTCATGTAGTCCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACaggtacagtgatgaattcatcgtgtctgactgacacatgttggttcacttaa Alignment from CESAR gTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTC-ATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACag tcaatagtgtcctgagagtactgactttgcccccttttgtcttgttttaggTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTATGACATCTGTCATGTAGTCCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACaggtacagtgatgaattcatcgtgtctgactgacacatgttggttcacttaa Alignment from Spaln_aa2Genome GTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTC-ATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG tcaatagtgtcctgagagtactgactttgcccccttttgtcttgttttagGTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTATGACATCTGTCATGTAGTCcATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAGgtacagtgatgaattcatcgtgtctgactgacacatgttggttcacttaa Alignment from Spaln_nt2Genome GTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGT-CATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG tcaatagtgtcctgagagtactgactttgcccccttttgtcttgttttagGTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTATGACATCTGTCATGTAGTCCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAGgtacagtgatgaattcatcgtgtctgactgacacatgttggttcacttaa Alignment from Pairagon GTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGT-CATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG tcaatagtgtcctgagagtactgactttgcccccttttgtcttgttttagGTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTATGACATCTGTCATGTAGTCCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAGgtacagtgatgaattcatcgtgtctgactgacacatgttggttcacttaa Alignment from Exonerate_protein2genome GTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTC-ATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG tcaatagtgtcctgagagtactgactttgcccccttttgtcttgttttagGTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTATGACATCTGTCATGTAGTCCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAGgtacagtgatgaattcatcgtgtctgactgacacatgttggttcacttaa Alignment from Exonerate_coding2genome GTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTC-ATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG tcaatagtgtcctgagagtactgactttgcccccttttgtcttgttttagGTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTATGACATCTGTCATGTAGTCCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAGgtacagtgatgaattcatcgtgtctgactgacacatgttggttcacttaa Alignment from GeneWise GTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTA-GTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG tcaatagtgtcctgagagtactgactttgcccccttttgtcttgttttagGTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTATGACATCTGTCATGTAGTCCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAGgtacagtgatgaattcatcgtgtctgactgacacatgttggttcacttaa #### Pga5_ID2970_8 --> 0 - 0 Original Alignment TACTTCCTCAAG-TGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG tgggaagtctgctctgggcctcctaccgtgttcttgttttcacactacagTACTTCCTAAAGCTGTGAC---GTCAACTGCTTGCCTGATATTGTCTTCTCCATTGGTAGTGTTACATACCCAGTGCCAGCTAGTGCCTACATTCGAAAGgtaagtaaggtgggagtgggtgagcacctcatcatgctttggtttctatg Alignment from CESAR TACTTCCTCAAG-TGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG tgggaagtctgctctgggcctcctaccgtgttcttgttttcacactacagTACTTCCTAAAGCTGTGAC---GTCAACTGCTTGCCTGATATTGTCTTCTCCATTGGTAGTGTTACATACCCAGTGCCAGCTAGTGCCTACATTCGAAAGgtaagtaaggtgggagtgggtgagcacctcatcatgctttggtttctatg Alignment from Spaln_aa2Genome TACTTCCTCAAG-TGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG tgggaagtctgctctgggcctcctaccgtgttcttgttttcacactacagTACTTCCTAAAGcTGTGAC---GTCAACTGCTTGCCTGATATTGTCTTCTCCATTGGTAGTGTTACATACCCAGTGCCAGCTAGTGCCTACATTCGAAAGgtaagtaaggtgggagtgggtgagcacctcatcatgctttggtttctatg Alignment from Spaln_nt2Genome TACTTCCTCAAG-TGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG tgggaagtctgctctgggcctcctaccgtgttcttgttttcacactacagTACTTCCTAAAGCTGTGA---CGTCAACTGCTTGCCTGATATTGTCTTCTCCATTGGTAGTGTTACATACCCAGTGCCAGCTAGTGCCTACATTCGAAAGgtaagtaaggtgggagtgggtgagcacctcatcatgctttggtttctatg Alignment from Pairagon TACTTCCTCAAG-TGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG tgggaagtctgctctgggcctcctaccgtgttcttgttttcacactacagTACTTCCTAAAGCTGTGA---CGTCAACTGCTTGCCTGATATTGTCTTCTCCATTGGTAGTGTTACATACCCAGTGCCAGCTAGTGCCTACATTCGAAAGgtaagtaaggtgggagtgggtgagcacctcatcatgctttggtttctatg Alignment from Exonerate_protein2genome TACTTCCTCAAG-TGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG tgggaagtctgctctgggcctcctaccgtgttcttgttttcacactacagTACTTCCTAAAGCTGTGAC---GTCAACTGCTTGCCTGATATTGTCTTCTCCATTGGTAGTGTTACATACCCAGTGCCAGCTAGTGCCTACATTCGAAAGgtaagtaaggtgggagtgggtgagcacctcatcatgctttggtttctatg Alignment from Exonerate_coding2genome TACTTCCTCAAG-TGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG tgggaagtctgctctgggcctcctaccgtgttcttgttttcacactacagTACTTCCTAAAGCTGTGAC---GTCAACTGCTTGCCTGATATTGTCTTCTCCATTGGTAGTGTTACATACCCAGTGCCAGCTAGTGCCTACATTCGAAAGgtaagtaaggtgggagtgggtgagcacctcatcatgctttggtttctatg Alignment from GeneWise -----------------------------------------------GAGTACTTCCTC-AAGTGTGACACCATCAACACCCTGCCTGATATTGTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG TGGGAAGTCTGCTCTGGGCCTCCTACCGTGTTCTTGTTTTCACACTACAGTACTTCCTAAAGCTGTGAC---GTCAACTGCTTGCCTGATATTGTCTTCTCCATTGGTAGTGTTACATACCCAGTGCCAGCTAGTGCCTACATTCGAAAGgtaagtaaggtgggagtgggtgagcacctcatcatgctttggtttctatg #### Pitpnm1_ID309_6 --> 2 - 1 Original Alignment gcGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAA-TTCTTTGATGCCCATg gacagggccccaccctgaactcccaagccctctgtctgattattttccaggtGGTGTATCTCCGCAGAGCTTGTCTGAATGGCACATGCAGAATGTTGCCCGAGACTCCAAAAACAGCTCTGAGGAAGAACTTCTTTGATGCCCATggtgagcacagaagccagattgtaaaggcagattgtggagaatgggggtat Alignment from CESAR gcGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAA-TTCTTTGATGCCCATg gacagggccccaccctgaactcccaagccctctgtctgattattttccaggtGGTGTATCTCCGCAGAGCTTGTCTGAATGGCACATGCAGAATGTTGCCCGAGACTCCAAAAACAGCTCTGAGGAAGAACTTCTTTGATGCCCATggtgagcacagaagccagattgtaaaggcagattgtggagaatgggggtat Alignment from Spaln_aa2Genome GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAA-TTCTTTGATGCCCATG gacagggccccaccctgaactcccaagccctctgtctgattattttccagGTGGTGTATCTCCGCAGAGCTTGTCTGAATGGCACATGCAGAATGTTGCCCGAGACTCCAAAAACAGCTCTGAGGAAGAAcTTCTTTGATGCCCATGgtgagcacagaagccagattgtaaaggcagattgtggagaatgggggtat Alignment from Spaln_nt2Genome GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAA-TTCTTTGATGCCCATG gacagggccccaccctgaactcccaagccctctgtctgattattttccagGTGGTGTATCTCCGCAGAGCTTGTCTGAATGGCACATGCAGAATGTTGCCCGAGACTCCAAAAACAGCTCTGAGGAAGAACTTCTTTGATGCCCATGgtgagcacagaagccagattgtaaaggcagattgtggagaatgggggtat Alignment from Pairagon GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAA-TTCTTTGATGCCCATG gacagggccccaccctgaactcccaagccctctgtctgattattttccagGTGGTGTATCTCCGCAGAGCTTGTCTGAATGGCACATGCAGAATGTTGCCCGAGACTCCAAAAACAGCTCTGAGGAAGAACTTCTTTGATGCCCATGgtgagcacagaagccagattgtaaaggcagattgtggagaatgggggtat Alignment from Exonerate_protein2genome GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAA-TTCTTTGATGCCCATG gacagggccccaccctgaactcccaagccctctgtctgattattttccagGTGGTGTATCTCCGCAGAGCTTGTCTGAATGGCACATGCAGAATGTTGCCCGAGACTCCAAAAACAGCTCTGAGGAAGAACTTCTTTGATGCCCATGgtgagcacagaagccagattgtaaaggcagattgtggagaatgggggtat Alignment from Exonerate_coding2genome GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAA-TTCTTTGATGCCCATG gacagggccccaccctgaactcccaagccctctgtctgattattttccagGTGGTGTATCTCCGCAGAGCTTGTCTGAATGGCACATGCAGAATGTTGCCCGAGACTCCAAAAACAGCTCTGAGGAAGAACTTCTTTGATGCCCATGgtgagcacagaagccagattgtaaaggcagattgtggagaatgggggtat Alignment from GeneWise -------------------------------------------------GGCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGCAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAA-GAATTCTTTGATGCCCATG GACAGGGCCCCACCCTGAACTCCCAAGCCCTCTGTCTGATTATTTTCCAGGTGGTGTATCTCCGCAGAGCTTGTCTGAATGGCACATGCAGAATGTTGCCCGAGACTCCAAAAACAGCTCTGAGGAAGAACTTCTTTGATGCCCATGgtgagcacagaagccagattgtaaaggcagattgtggagaatgggggtat #### Pitpnm1_ID312_9 --> 0 - 2 Original Alignment GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTG-GCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCaa aacagtaggggtccaaatgtactcatgcatggacattcagatcgttccagGGCCTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTACATGACCTCTTCCTCATACTGCACAGTGGCAGCATCCTGGACCCTGGCCCTGGAGACACCAACTCTAAGCAGGCTGATGTGCAAACACTAAGCACCACTTTTGAGGCTGTCACCCGAGTCCATTTCCCCAAGGCACTAGGTCATGTACGCACTGCGGCTGGTGCCCTGTCCATCCATTTGTGCAGCTGCTTATGCCCTTGTCTCCaagtgagcgcagagggtggaaaatggagcaaacacagggcgagtgataatct Alignment from CESAR GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTG-GCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCaa aacagtaggggtccaaatgtactcatgcatggacattcagatcgttccagGGCCTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTACATGACCTCTTCCTCATACTGCACAGTGGCAGCATCCTGGACCCTGGCCCTGGAGACACCAACTCTAAGCAGGCTGATGTGCAAACACTAAGCACCACTTTTGAGGCTGTCACCCGAGTCCATTTCCCCAAGGCACTAGGTCATGTACGCACTGCGGCTGGTGCCCTGTCCATCCATTTGTGCAGCTGCTTATGCCCTTGTCTCCaagtgagcgcagagggtggaaaatggagcaaacacagggcgagtgataatct Alignment from Spaln_aa2Genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTG-GCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagtaggggtccaaatgtactcatgcatggacattcagatcgttccagGGCCTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTACATGACCTCTTCCTCATACTGCACAGTGGCAGCATCCTGGACCCTGGCCCTGGAGACACCAACTCTAAGCAGGCTGATGTGCAAACACTAAGCACCACTTTTGAGGCTGTCACCCGAGTCCATTTCCCCAAGGCACTAGGTCATGTAcGCACTGCGGCTGGTGCCCTGTCCATCCATTTGTGCAGCTGCTTATGCCCTTGTCTCCAAgtgagcgcagagggtggaaaatggagcaaacacagggcgagtgataatct Alignment from Spaln_nt2Genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTG-GCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagtaggggtccaaatgtactcatgcatggacattcagatcgttccagGGCCTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTACATGACCTCTTCCTCATACTGCACAGTGGCAGCATCCTGGACCCTGGCCCTGGAGACACCAACTCTAAGCAGGCTGATGTGCAAACACTAAGCACCACTTTTGAGGCTGTCACCCGAGTCCATTTCCCCAAGGCACTAGGTCATGTACGCACTGCGGCTGGTGCCCTGTCCATCCATTTGTGCAGCTGCTTATGCCCTTGTCTCCAAgtgagcgcagagggtggaaaatggagcaaacacagggcgagtgataatct Alignment from Pairagon GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTG-GCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagtaggggtccaaatgtactcatgcatggacattcagatcgttccagGGCCTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTACATGACCTCTTCCTCATACTGCACAGTGGCAGCATCCTGGACCCTGGCCCTGGAGACACCAACTCTAAGCAGGCTGATGTGCAAACACTAAGCACCACTTTTGAGGCTGTCACCCGAGTCCATTTCCCCAAGGCACTAGGTCATGTACGCACTGCGGCTGGTGCCCTGTCCATCCATTTGTGCAGCTGCTTATGCCCTTGTCTCCAAgtgagcgcagagggtggaaaatggagcaaacacagggcgagtgataatct Alignment from Exonerate_protein2genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTG-GCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagtaggggtccaaatgtactcatgcatggacattcagatcgttccagGGCCTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTACATGACCTCTTCCTCATACTGCACAGTGGCAGCATCCTGGACCCTGGCCCTGGAGACACCAACTCTAAGCAGGCTGATGTGCAAACACTAAGCACCACTTTTGAGGCTGTCACCCGAGTCCATTTCCCCAAGGCACTAGGTCATGTACGCACTGCGGCTGGTGCCCTGTCCATCCATTTGTGCAGCTGCTTATGCCCTTGTCTCCAAgtgagcgcagagggtggaaaatggagcaaacacagggcgagtgataatct Alignment from Exonerate_coding2genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTG-GCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagtaggggtccaaatgtactcatgcatggacattcagatcgttccagGGCCTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTACATGACCTCTTCCTCATACTGCACAGTGGCAGCATCCTGGACCCTGGCCCTGGAGACACCAACTCTAAGCAGGCTGATGTGCAAACACTAAGCACCACTTTTGAGGCTGTCACCCGAGTCCATTTCCCCAAGGCACTAGGTCATGTACGCACTGCGGCTGGTGCCCTGTCCATCCATTTGTGCAGCTGCTTATGCCCTTGTCTCCAAgtgagcgcagagggtggaaaatggagcaaacacagggcgagtgataatct Alignment from GeneWise GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTG-GCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagtaggggtccaaatgtactcatgcatggacattcagatcgttccagGGCCTAGATGGAGCTGGGGATCTAGTTGTTGAAGCATGCTCTGTACATGACCTCTTCCTCATACTGCACAGTGGCAGCATCCTGGACCCTGGCCCTGGAGACACCAACTCTAAGCAGGCTGATGTGCAAACACTAAGCACCACTTTTGAGGCTGTCACCCGAGTCCATTTCCCCAAGGCACTAGGTCATGTACGCACTGCGGCTGGTGCCCTGTCCATCCATTTGTGCAGCTGCTTATGCCCTTGTCTCCAAgtgagcgcagagggtggaaaatggagcaaacacagggcgagtgataatct #### Pitpnm1_ID313_10 --> 1 - 0 Original Alignment cCTGAGCCCCTACAGCCATGATGGG-GATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG aaatgctgtggttaagctgaaagtcagtctctatccattttgccctttagtCTGAGTCCTTACAGCCATGATGGGCGACAGCCTGTCCCGCTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCGACCTCATCCTCTCAATACCAGGGTGCAGTGGCCACTGTCATTGCTCACACCAACCAGGCCTATGCAGCCTTCCTGCGTTCATCAGAGGGCACAGGTTTCTGTGGACAAgtaagcggctaatcatgttcccaaaagtcagccagtacccatgcctgcag Alignment from CESAR cCTGAGCCCCTACAGCCATGATGGG-GATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG aaatgctgtggttaagctgaaagtcagtctctatccattttgccctttagtCTGAGTCCTTACAGCCATGATGGGCGACAGCCTGTCCCGCTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCGACCTCATCCTCTCAATACCAGGGTGCAGTGGCCACTGTCATTGCTCACACCAACCAGGCCTATGCAGCCTTCCTGCGTTCATCAGAGGGCACAGGTTTCTGTGGACAAgtaagcggctaatcatgttcccaaaagtcagccagtacccatgcctgcag Alignment from Spaln_aa2Genome CCTGAGCCCCTACAGCCATGATGGG-GATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG aaatgctgtggttaagctgaaagtcagtctctatccattttgccctttagTCTGAGTCCTTACAGCCATGATGGGcGACAGCCTGTCCCGCTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCGACCTCATCCTCTCAATACCAGGGTGCAGTGGCCACTGTCATTGCTCACACCAACCAGGCCTATGCAGCCTTCCTGCGTTCATCAGAGGGCACAGGTTTCTGTGGACAAgtaagcggctaatcatgttcccaaaagtcagccagtacccatgcctgcag Alignment from Spaln_nt2Genome CCTGAGCCCCTACAGCCATGAT-GGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG aaatgctgtggttaagctgaaagtcagtctctatccattttgccctttagTCTGAGTCCTTACAGCCATGATGGGCGACAGCCTGTCCCGCTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCGACCTCATCCTCTCAATACCAGGGTGCAGTGGCCACTGTCATTGCTCACACCAACCAGGCCTATGCAGCCTTCCTGCGTTCATCAGAGGGCACAGGTTTCTGTGGACAAgtaagcggctaatcatgttcccaaaagtcagccagtacccatgcctgcag Alignment from Pairagon CCTGAGCCCCTACAGCCATGATGGG-GATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG aaatgctgtggttaagctgaaagtcagtctctatccattttgccctttagTCTGAGTCCTTACAGCCATGATGGGCGACAGCCTGTCCCGCTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCGACCTCATCCTCTCAATACCAGGGTGCAGTGGCCACTGTCATTGCTCACACCAACCAGGCCTATGCAGCCTTCCTGCGTTCATCAGAGGGCACAGGTTTCTGTGGACAAgtaagcggctaatcatgttcccaaaagtcagccagtacccatgcctgcag Alignment from Exonerate_protein2genome CCTGAGCCCCTACAGCCATGAT-GGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG aaatgctgtggttaagctgaaagtcagtctctatccattttgccctttagTCTGAGTCCTTACAGCCATGATGGGCGACAGCCTGTCCCGCTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCGACCTCATCCTCTCAATACCAGGGTGCAGTGGCCACTGTCATTGCTCACACCAACCAGGCCTATGCAGCCTTCCTGCGTTCATCAGAGGGCACAGGTTTCTGTGGACAAgtaagcggctaatcatgttcccaaaagtcagccagtacccatgcctgcag Alignment from Exonerate_coding2genome CCTGAGCCCCTACAGCCATGAT-GGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG aaatgctgtggttaagctgaaagtcagtctctatccattttgccctttagTCTGAGTCCTTACAGCCATGATGGGCGACAGCCTGTCCCGCTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCGACCTCATCCTCTCAATACCAGGGTGCAGTGGCCACTGTCATTGCTCACACCAACCAGGCCTATGCAGCCTTCCTGCGTTCATCAGAGGGCACAGGTTTCTGTGGACAAgtaagcggctaatcatgttcccaaaagtcagccagtacccatgcctgcag Alignment from GeneWise CCTGAGCCCCTACAGCCATGAT-GGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG aaatgctgtggttaagctgaaagtcagtctctatccattttgccctttagTCTGAGTCCTTACAGCCATGATGGGCGACAGCCTGTCCCGCTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCGACCTCATCCTCTCAATACCAGGGTGCAGTGGCCACTGTCATTGCTCACACCAACCAGGCCTATGCAGCCTTCCTGCGTTCATCAGAGGGCACAGGTTTCTGTGGACAAgtaagcggctaatcatgttcccaaaagtcagccagtacccatgcctgcag #### Pitpnm1_ID319_16 --> 2 - 0 Original Alignment tcCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGAT-GTAGTGGCCTTCATTCTGCGCCAG agtggtggacagcagtcccccctgactccctttgtgtcctttcttcccagtcCTGGACCGCTGGTGGGGAAACAAGCGCATTGACTATTCACTCTACTGCCCAGAGGCACTCACAGCCTTCCCCACAGTCACACTGCCCCACCTCTTTCATGCCAGCTACTGGGAGTCAGCGGATCGTAGTCGCCTTCATTCTGCGCCAGgtgagtgaacccagggtgtgggcccaacactgagacaacaaggactattt Alignment from CESAR tcCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGAT-GTAGTGGCCTTCATTCTGCGCCAG agtggtggacagcagtcccccctgactccctttgtgtcctttcttcccagtcCTGGACCGCTGGTGGGGAAACAAGCGCATTGACTATTCACTCTACTGCCCAGAGGCACTCACAGCCTTCCCCACAGTCACACTGCCCCACCTCTTTCATGCCAGCTACTGGGAGTCAGCGGATCGTAGTCGCCTTCATTCTGCGCCAGgtgagtgaacccagggtgtgggcccaacactgagacaacaaggactattt Alignment from Spaln_aa2Genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGAT-GTAGTGGCCTTCATTCTGCGCCAG agtggtggacagcagtcccccctgactccctttgtgtcctttcttcccagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGACTATTCACTCTACTGCCCAGAGGCACTCACAGCCTTCCCCACAGTCACACTGCCCCACCTCTTTCATGCCAGCTACTGGGAGTCAGCGGATcGTAGTCGCCTTCATTCTGCGCCAGgtgagtgaacccagggtgtgggcccaacactgagacaacaaggactattt Alignment from Spaln_nt2Genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGAT-GTAGTGGCCTTCATTCTGCGCCAG agtggtggacagcagtcccccctgactccctttgtgtcctttcttcccagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGACTATTCACTCTACTGCCCAGAGGCACTCACAGCCTTCCCCACAGTCACACTGCCCCACCTCTTTCATGCCAGCTACTGGGAGTCAGCGGATCGTAGTCGCCTTCATTCTGCGCCAGgtgagtgaacccagggtgtgggcccaacactgagacaacaaggactattt Alignment from Pairagon TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGAT-GTAGTGGCCTTCATTCTGCGCCAG agtggtggacagcagtcccccctgactccctttgtgtcctttcttcccagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGACTATTCACTCTACTGCCCAGAGGCACTCACAGCCTTCCCCACAGTCACACTGCCCCACCTCTTTCATGCCAGCTACTGGGAGTCAGCGGATCGTAGTCGCCTTCATTCTGCGCCAGgtgagtgaacccagggtgtgggcccaacactgagacaacaaggactattt Alignment from Exonerate_protein2genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGAT-GTAGTGGCCTTCATTCTGCGCCAG agtggtggacagcagtcccccctgactccctttgtgtcctttcttcccagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGACTATTCACTCTACTGCCCAGAGGCACTCACAGCCTTCCCCACAGTCACACTGCCCCACCTCTTTCATGCCAGCTACTGGGAGTCAGCGGATCGTAGTCGCCTTCATTCTGCGCCAGgtgagtgaacccagggtgtgggcccaacactgagacaacaaggactattt Alignment from Exonerate_coding2genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGAT-GTAGTGGCCTTCATTCTGCGCCAG agtggtggacagcagtcccccctgactccctttgtgtcctttcttcccagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGACTATTCACTCTACTGCCCAGAGGCACTCACAGCCTTCCCCACAGTCACACTGCCCCACCTCTTTCATGCCAGCTACTGGGAGTCAGCGGATCGTAGTCGCCTTCATTCTGCGCCAGgtgagtgaacccagggtgtgggcccaacactgagacaacaaggactattt Alignment from GeneWise TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAATCAGCGGAT-GTAGTGGCCTTCATTCTGCGCCAG agtggtggacagcagtcccccctgactccctttgtgtcctttcttcccagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGACTATTCACTCTACTGCCCAGAGGCACTCACAGCCTTCCCCACAGTCACACTGCCCCACCTCTTTCATGCCAGCTACTGGGAGTCAGCGGATCGTAGTCGCCTTCATTCTGCGCCAGgtgagtgaacccagggtgtgggcccaacactgagacaacaaggactattt #### Pitpnm1_ID321_18 --> 0 - 0 Original Alignment AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGT-GAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGC ccaactaacccttccctctgtcttctgttctgtgtgcttcattcacaaagAATGTCACTTCCAACCACCGAGCAAGTGACACTGTGGTATGTCGAGGGCCGTCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCGTTGGATGTGGTCACACTCACTGGAGAAGAGgtttttgttgtctcttgtgccacagGTTGATGTCTATGTCATGACACAGC Alignment from CESAR AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGT-GAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGC ccaactaacccttccctctgtcttctgttctgtgtgcttcattcacaaagAATGTCACTTCCAACCACCGAGCAAGTGACACTGTGGTATGTCGAGGGCCGTCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCGTTGGATGTGGTCACACTCACTGGAGAAGAGgtccttagaattttctgttttacagGTTGATGTCTATGTCATGACACAGC Alignment from Spaln_aa2Genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGT-GAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG-------------------------GTGGATGTCTACGTCATGACACAGC ccaactaacccttccctctgtcttctgttctgtgtgcttcattcacaaagAATGTCACTTCCAACCACCGAGCAAGTGACACTGTGGTATGTcGAGGGCCGTCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCGTTGGATGTGGTCACACTCACTGGAGAAGAGGTTTTTGTTGTCTCTTGTGCCACAgGTTGATGTCTATGTCATGACACAGC Alignment from Spaln_nt2Genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGT-GAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGA-GA------------------------AGGTGGATGTCTACGTCATGACACAGC ccaactaacccttccctctgtcttctgttctgtgtgcttcattcacaaagAATGTCACTTCCAACCACCGAGCAAGTGACACTGTGGTATGTCGAGGGCCGTCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCGTTGGATGTGGTCACACTCACTGGAGAAGAGGTTTTTGTTGTCTCTTGTGCCACAGGTTGATGTCTATGTCATGACACAGC Alignment from Pairagon AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGT-GAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGA-------------------------AGGTGGATGTCTACGTCATGACACAGC ccaactaacccttccctctgtcttctgttctgtgtgcttcattcacaaagAATGTCACTTCCAACCACCGAGCAAGTGACACTGTGGTATGTCGAGGGCCGTCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCGTTGGATGTGGTCACACTCACTGGAGAAGAGGTTTTTGTTGTCTCTTGTGCCACAGGTTGATGTCTATGTCATGACACAGC Alignment from Exonerate_protein2genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGT-GAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAGGTGGATGTC ccaactaacccttccctctgtcttctgttctgtgtgcttcattcacaaagAATGTCACTTCCAACCACCGAGCAAGTGACACTGTGGTATGTCGAGGGCCGTCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCGTTGGATGTGGTCACACTCACTGGAGAAGAGGTTTTTGTTgtctcttgtgccacaggttgatgtctatgtcatgacacagc Alignment from Exonerate_coding2genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGA---GGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAG AGAAGGTGGATGTCTACGTCATGAC ccaactaacccttccctctgtcttctgttctgtgtgcttcattcacaaagAATGTCACTTCCAACCACCGAGCAAGTGACACTGTGGTATGT--CGAGGGCCGTCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCGTTGGATGTGGTCACACTCACTGGAGaagaggtttttgttgtctcttgtgccacagG-----TTGATGTCTATGTCATGAC Alignment from GeneWise AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGT-GAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGC ccaactaacccttccctctgtcttctgttctgtgtgcttcattcacaaagAATGTCACTTCCAACCACCGAGCAAGTGACACTGTGGTATGTCGAGGGCCGTCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCGTTGGATGTGGTCACACTCACTGGAGAAGAGgtttttgttgtctcttgtgccacagGTTGATGTCTATGTCATGACACAGC #### Pkd2l1_ID8955_13 --> 0 - 2 Original Alignment GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCCCCAGGCGAA-TTGGGCGCGGAGGCTGCCAGAGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACat tgactccccagactcagcatctcttgatgttttctctcactaactgccagGTGACCCTCAATGCTGAGATCGAGAACCTAGGCCAGTCTGTTGGACATAGCCCTCCAGGTGAACCTG------GAGGCTGCAAGGGGAAAAAGCTGGGTTTCAGGAGAAGAATTTGACatgtgagttgaggttagtgtaaggaatggctgactgtggcaccttttgagac Alignment from CESAR GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCCCCAGGCGAA-TTGGGCGCGGAGGCTGCCAGAGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACat tgactccccagactcagcatctcttgatgttttctctcactaactgccagGTGACCCTCAATGCTGAGATCGAGAACCTAGGCCAGTCTGTTGGACATAGCCCTCCAGGTGAACCTG------GAGGCTGCAAGGGGAAAAAGCTGGGTTTCAGGAGAAGAATTTGACatgtgagttgaggttagtgtaaggaatggctgactgtggcaccttttgagac Alignment from Spaln_aa2Genome GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCCCCAGGCGAATTGGGCGCGGAGGCTGCCAGAGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACAT tgactccccagactcagcatctcttgatgttttctctcactaactgccagGTGACCCTCAATGCTGAGATCGAGAACCTAGGCCAGTCTGTTGGACATAGCCCTCCAGGTGAACCTGGAG-----GCTGCAAGGGGAAAAAGCTGGGTTTCAGGAGAAGAATTTGACATgtgagttgaggttagtgtaaggaatggctgactgtggcaccttttgagac Alignment from Spaln_nt2Genome GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCCCCAGGCGAATTGGGCGCGGAGGCTGCCAGAGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACAT tgactccccagactcagcatctcttgatgttttctctcactaactgccagGTGACCCTCAATGCTGAGATCGAGAACCTAGGCCAGTCTGTTGGACATAGCCCTCCAGGTGAA-----CCTGGAGGCTGCAAGGGGAAAAAGCTGGGTTTCAGGAGAAGAATTTGACATgtgagttgaggttagtgtaaggaatggctgactgtggcaccttttgagac Alignment from Pairagon GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCCCCAGGCGAATTGGGCGCGGAGGCTGCCAGAGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACAT tgactccccagactcagcatctcttgatgttttctctcactaactgccagGTGACCCTCAATGCTGAGATCGAGAACCTAGGCCAGTCTGTTGGACATAGCCCTCCAGGTGAA-----CCTGGAGGCTGCAAGGGGAAAAAGCTGGGTTTCAGGAGAAGAATTTGACATgtgagttgaggttagtgtaaggaatggctgactgtggcaccttttgagac Alignment from Exonerate_protein2genome GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCCCCAGGCGAA-TTGGGCGCGGAGGCTGCCAGAGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACAT tgactccccagactcagcatctcttgatgttttctctcactaactgccagGTGACCCTCAATGCTGAGATCGAGAACCTAGGCCAGTCTGTTGGACATAGCCCTCCAGGTGAACCTG------GAGGCTGCAAGGGGAAAAAGCTGGGTTTCAGGAGAAGAATTTGACATgtgagttgaggttagtgtaaggaatggctgactgtggcaccttttgagac Alignment from Exonerate_coding2genome GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCCCCAGGCGAA-TTGGGCGCGGAGGCTGCCAGAGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACAT tgactccccagactcagcatctcttgatgttttctctcactaactgccagGTGACCCTCAATGCTGAGATCGAGAACCTAGGCCAGTCTGTTGGACATAGCCCTCCAGGTGAACCTG------GAGGCTGCAAGGGGAAAAAGCTGGGTTTCAGGAGAAGAATTTGACATgtgagttgaggttagtgtaaggaatggctgactgtggcaccttttgagac Alignment from GeneWise GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCTGTTGGACACAGCCCCCCAGGCGAATTGGGCGCGGAGGCTGCCAGAGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACAT tgactccccagactcagcatctcttgatgttttctctcactaactgccagGTGACCCTCAATGCTGAGATCGAGAACCTAGGCCAGTCTGTTGGACATAGCCCTCCAGGTGAAC-----CTGGAGGCTGCAAGGGGAAAAAGCTGGGTTTCAGGAGAAGAATTTGACATgtgagttgaggttagtgtaaggaatggctgactgtggcaccttttgagac #### Pkd2l1_ID8958_10 --> 0 - 0 Original Alignment AACATGTTCCTGGCCATCATCAACGACACATACTCCGAG-GTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTTTCTGACTTCCTGAAACAG gaaaaactgatggcttcagagattgctgaacggctcaactttctccctagAATATGTTCCTGGCCATTATCAACGACACATACTCCGAGCGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGCTGCAGCTTTCTGACTTCCTGAAACAGgtgagggccccagctctgcatagcttccataccaccagtgtcccccattt Alignment from CESAR AACATGTTCCTGGCCATCATCAACGACACATACTCCGAG-GTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTTTCTGACTTCCTGAAACAG gaaaaactgatggcttcagagattgctgaacggctcaactttctccctagAATATGTTCCTGGCCATTATCAACGACACATACTCCGAGCGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGCTGCAGCTTTCTGACTTCCTGAAACAGgtgagggccccagctctgcatagcttccataccaccagtgtcccccattt Alignment from Spaln_aa2Genome AACATGTTCCTGGCCATCATCAACGACACATACTCCGAG-GTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTTTCTGACTTCCTGAAACAG gaaaaactgatggcttcagagattgctgaacggctcaactttctccctagAATATGTTCCTGGCCATTATCAACGACACATACTCCGAGcGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGCTGCAGCTTTCTGACTTCCTGAAACAGgtgagggccccagctctgcatagcttccataccaccagtgtcccccattt Alignment from Spaln_nt2Genome AACATGTTCCTGGCCATCATCAACGACACATACTCCGAG-GTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTTTCTGACTTCCTGAAACAG gaaaaactgatggcttcagagattgctgaacggctcaactttctccctagAATATGTTCCTGGCCATTATCAACGACACATACTCCGAGCGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGCTGCAGCTTTCTGACTTCCTGAAACAGgtgagggccccagctctgcatagcttccataccaccagtgtcccccattt Alignment from Pairagon AACATGTTCCTGGCCATCATCAACGACACATACTCCGAG-GTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTTTCTGACTTCCTGAAACAG gaaaaactgatggcttcagagattgctgaacggctcaactttctccctagAATATGTTCCTGGCCATTATCAACGACACATACTCCGAGCGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGCTGCAGCTTTCTGACTTCCTGAAACAGgtgagggccccagctctgcatagcttccataccaccagtgtcccccattt Alignment from Exonerate_protein2genome AACATGTTCCTGGCCATCATCAACGACACATACTCCGAG-GTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTTTCTGACTTCCTGAAACAG gaaaaactgatggcttcagagattgctgaacggctcaactttctccctagAATATGTTCCTGGCCATTATCAACGACACATACTCCGAGCGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGCTGCAGCTTTCTGACTTCCTGAAACAGgtgagggccccagctctgcatagcttccataccaccagtgtcccccattt Alignment from Exonerate_coding2genome AACATGTTCCTGGCCATCATCAACGACACATACTCCGAG-GTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTTTCTGACTTCCTGAAACAG gaaaaactgatggcttcagagattgctgaacggctcaactttctccctagAATATGTTCCTGGCCATTATCAACGACACATACTCCGAGCGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGCTGCAGCTTTCTGACTTCCTGAAACAGgtgagggccccagctctgcatagcttccataccaccagtgtcccccattt Alignment from GeneWise AACATGTTCCTGGCCATCATCAACGACACATACTCCGAG-GTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTTTCTGACTTCCTGAAACAG gaaaaactgatggcttcagagattgctgaacggctcaactttctccctagAATATGTTCCTGGCCATTATCAACGACACATACTCCGAGCGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGCTGCAGCTTTCTGACTTCCTGAAACAGgtgagggccccagctctgcatagcttccataccaccagtgtcccccattt #### Plcb3_ID1901_30 --> 0 - 0 Original Alignment CTGGAAGAGGCCCAGAAGCAG-CGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG catcccaagccttgctctgccctcaaccttttgttttttctcctttaaagTTGGGGGAGGCCCAGAAACAGCCAGCATGAACGCCTAGTGGCAGGGCAACAGCAAGTCCTCCAGCAACTAGAGGAAGAGAAACCCAAGgtaagccctggaagaggcgcatatacaggtagcaggggagctggtcaacc Alignment from CESAR CTGGAAGAGGCCCAGAAGCAG-CGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG catcccaagccttgctctgccctcaaccttttgttttttctcctttaaagTTGGGGGAGGCCCAGAAACAGCCAGCATGAACGCCTAGTGGCAGGGCAACAGCAAGTCCTCCAGCAACTAGAGGAAGAGAAACCCAAGgtaagccctggaagaggcgcatatacaggtagcaggggagctggtcaacc Alignment from Spaln_aa2Genome GGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG catcccaagccttgctctgccctcaaccttttgttttttctcctttaaagttgggggagGCCCAGAAACAGCCAGCATGAACGCCTAGTGGCAGGGCAACAGCAAGTCCTCCAGCAACTAGAGGAAGAGAAACCCAAGgtaagccctggaagaggcgcatatacaggtagcaggggagctggtcaacc Alignment from Spaln_nt2Genome CTGGAAGAGGCCCAGAAGCAGCGC-CATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG catcccaagccttgctctgccctcaaccttttgttttttctcctttaaagTTGGGGGAGGCCCAGAAACAGCCAGCATGAACGCCTAGTGGCAGGGCAACAGCAAGTCCTCCAGCAACTAGAGGAAGAGAAACCCAAGgtaagccctggaagaggcgcatatacaggtagcaggggagctggtcaacc Alignment from Pairagon CTGGAAGAGGCCCAGAAGCAG-CGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG catcccaagccttgctctgccctcaaccttttgttttttctcctttaaagTTGGGGGAGGCCCAGAAACAGCCAGCATGAACGCCTAGTGGCAGGGCAACAGCAAGTCCTCCAGCAACTAGAGGAAGAGAAACCCAAGgtaagccctggaagaggcgcatatacaggtagcaggggagctggtcaacc Alignment from Exonerate_protein2genome CTGGAAGAGGCCCAGAAGCAG-CGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG catcccaagccttgctctgccctcaaccttttgttttttctcctttaaagTTGGGGGAGGCCCAGAAACAGCCAGCATGAACGCCTAGTGGCAGGGCAACAGCAAGTCCTCCAGCAACTAGAGGAAGAGAAACCCAAGgtaagccctggaagaggcgcatatacaggtagcaggggagctggtcaacc Alignment from Exonerate_coding2genome CTGGAAGAGGCCCAGAAGCAG-CGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG catcccaagccttgctctgccctcaaccttttgttttttctcctttaaagTTGGGGGAGGCCCAGAAACAGCCAGCATGAACGCCTAGTGGCAGGGCAACAGCAAGTCCTCCAGCAACTAGAGGAAGAGAAACCCAAGgtaagccctggaagaggcgcatatacaggtagcaggggagctggtcaacc Alignment from GeneWise GGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG catcccaagccttgctctgccctcaaccttttgttttttctcctttaaagttgggggagGCCCAGAAACAGCCAGCATGAACGCCTAGTGGCAGGGCAACAGCAAGTCCTCCAGCAACTAGAGGAAGAGAAACCCAAGgtaagccctggaagaggcgcatatacaggtagcaggggagctggtcaacc #### Plcb3_ID1902_29 --> 1 - 0 Original Alignment gGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAAC-TCCATCAGACGG gttagtgggcgcagggacatagcttagcttcttccccacctgtcctggaggGAACTGACAGAGATTAATCGGCAACACATCACTGAGTCAGTAAACCTCCAACAGACGGgtgagagggtctcatctctctttcaccaacaggagctaagctttactgtg Alignment from CESAR gGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAAC-TCCATCAGACGG gttagtgggcgcagggacatagcttagcttcttccccacctgtcctggaggGAACTGACAGAGATTAATCGGCAACACATCACTGAGTCAGTAAACCTCCAACAGACGGgtgagagggtctcatctctctttcaccaacaggagctaagctttactgtg Alignment from Spaln_aa2Genome GGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAAC---------TCCATCAGACGG gttagtgggcgcagggacatagcttagcttcttccccacctgtcctggagGGAACTGACAGAGATTAATCGGCAACACATCACTGAGTCAGTAAACCTCCAACAGACGGGTGAGAGGgtctcatctctctttcaccaacaggagctaagctttactgtg Alignment from Spaln_nt2Genome GGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAAC-TCCATCAGACGG gttagtgggcgcagggacatagcttagcttcttccccacctgtcctggagGGAACTGACAGAGATTAATCGGCAACACATCACTGAGTCAGTAAACCTCCAACAGACGGgtgagagggtctcatctctctttcaccaacaggagctaagctttactgtg Alignment from Pairagon GGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAA-CTCCATCAGACGG gttagtgggcgcagggacatagcttagcttcttccccacctgtcctggagGGAACTGACAGAGATTAATCGGCAACACATCACTGAGTCAGTAAACCTCCAACAGACGGgtgagagggtctcatctctctttcaccaacaggagctaagctttactgtg Alignment from Exonerate_protein2genome GGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAAC-TCCATCAGACGG gttagtgggcgcagggacatagcttagcttcttccccacctgtcctggagGGAACTGACAGAGATTAATCGGCAACACATCACTGAGTCAGTAAACCTCCAACAGACGGgtgagagggtctcatctctctttcaccaacaggagctaagctttactgtg Alignment from Exonerate_coding2genome GGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAAC-TCCATCAGACGG gttagtgggcgcagggacatagcttagcttcttccccacctgtcctggagGGAACTGACAGAGATTAATCGGCAACACATCACTGAGTCAGTAAACCTCCAACAGACGGgtgagagggtctcatctctctttcaccaacaggagctaagctttactgtg Alignment from GeneWise GGAACTGACAGAGATTAATCGGCGGCACATCACTGAGTCGGTAAACTCCATCAGACGGCTGGAAGAG gttagtgggcgcagggacatagcttagcttcttccccacctgtcctggagGGAACTGACAGAGATTAATCGGCAACACATCACTGAGTCAGTAAACCTCCAACAGACGGGTGAGAGGgtctcatctctctttcaccaacaggagctaagctttactgtg #### Plcb3_ID1903_28 --> 1 - 2 Original Alignment gGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGG-GAGAAACACAAGAAGGAG---------------gt ggtgaccatcatccaacgtctgagtctcactccctttctttttactttaggGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGCGAGAAACACAAGAAGGAAGTGTATGGCCACTGGgtgtgagtgcaccgagttagtgggcgcagggacatagcttagcttgaccgat Alignment from CESAR gGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGG-GAGAAACACAAGAAGGAGgt ggtgaccatcatccaacgtctgagtctcactccctttctttttactttaggGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGCGAGAAACACAAGAAGGAAgtgtatggccactgggtgtgagtgcaccgagttagtgggcgcagggacatagcttagcttcttcccc Alignment from Spaln_aa2Genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGG-GAGAAACACAAGAAGGAGGT ggtgaccatcatccaacgtctgagtctcactccctttctttttactttagGGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGcGAGAAACACAAGAAGGAAGTgtatggccactgggtgtgagtgcaccgagttagtgggcgcagggacatagcttagcttgaccgat Alignment from Spaln_nt2Genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGG-GAGAAACACAAGAAGGAGGT ggtgaccatcatccaacgtctgagtctcactccctttctttttactttagGGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGCGAGAAACACAAGAAGGAAGTgtatggccactgggtgtgagtgcaccgagttagtgggcgcagggacatagcttagcttgaccgat Alignment from Pairagon GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGG-GAGAAACACAAGAAGGAGGT ggtgaccatcatccaacgtctgagtctcactccctttctttttactttagGGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGCGAGAAACACAAGAAGGAAGTgtatggccactgggtgtgagtgcaccgagttagtgggcgcagggacatagcttagcttgaccgat Alignment from Exonerate_protein2genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGG-GAGAAACACAAGAAGGAGGT ggtgaccatcatccaacgtctgagtctcactccctttctttttactttagGGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGCGAGAAACACAAGAAGGAAGTgtatggccactgggtgtgagtgcaccgagttagtgggcgcagggacatagcttagcttgaccgat Alignment from Exonerate_coding2genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGG-GAGAAACACAAGAAGGAGGT ggtgaccatcatccaacgtctgagtctcactccctttctttttactttagGGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGCGAGAAACACAAGAAGGAAGTgtatggccactgggtgtgagtgcaccgagttagtgggcgcagggacatagcttagcttgaccgat Alignment from GeneWise GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGG-GAGAAACACAAGAAGGAGGT ggtgaccatcatccaacgtctgagtctcactccctttctttttactttagGGAGAAGAAGGAGCTCCAGAAGATCCTGGATAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGCGAGAAACACAAGAAGGAAGTgtatggccactgggtgtgagtgcaccgagttagtgggcgcagggacatagcttagcttgaccgat #### Plcb3_ID1904_27 --> 0 - 2 Original Alignment GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTTC-AAGAGGCTGAAGGAGCTGAATGAAag gctaacacatcagccccatattacctgctgggactgtgttttaattatagGCTCATCAGTGGGTCAAGGAAGTTGTCCTGGATACACACACAACCCAATTCCAAGAGGCTAAGGGAATTGAAAGAAaggtacgtacagatagaaggtctgcgggactctggtgaccatcatccaacgt Alignment from CESAR GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTTC-AAGAGGCTGAAGGAGCTGAATGAAag gctaacacatcagccccatattacctgctgggactgtgttttaattatagGCTCATCAGTGGGTCAAGGAAGTTGTCCTGGATACACACACAACCCAATTCCAAGAGGCTAAGGGAATTGAAAGAAaggtacgtacagatagaaggtctgcgggactctggtgaccatcatccaacgt Alignment from Spaln_aa2Genome GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTTC-AAGAGGCTGAAGGAGCTGAATGAAAG gctaacacatcagccccatattacctgctgggactgtgttttaattatagGCTCATCAGTGGGTCAAGGAAGTTGTCCTGGATACACACACAACCCAATTCcAAGAGGCTAAGGGAATTGAAAGAAAGgtacgtacagatagaaggtctgcgggactctggtgaccatcatccaacgt Alignment from Spaln_nt2Genome GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTTC-AAGAGGCTGAAGGAGCTGAATGAAAG gctaacacatcagccccatattacctgctgggactgtgttttaattatagGCTCATCAGTGGGTCAAGGAAGTTGTCCTGGATACACACACAACCCAATTCCAAGAGGCTAAGGGAATTGAAAGAAAGgtacgtacagatagaaggtctgcgggactctggtgaccatcatccaacgt Alignment from Pairagon GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTT-CAAGAGGCTGAAGGAGCTGAATGAAAG gctaacacatcagccccatattacctgctgggactgtgttttaattatagGCTCATCAGTGGGTCAAGGAAGTTGTCCTGGATACACACACAACCCAATTCCAAGAGGCTAAGGGAATTGAAAGAAAGgtacgtacagatagaaggtctgcgggactctggtgaccatcatccaacgt Alignment from Exonerate_protein2genome GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTTC-AAGAGGCTGAAGGAGCTGAATGAAAG gctaacacatcagccccatattacctgctgggactgtgttttaattatagGCTCATCAGTGGGTCAAGGAAGTTGTCCTGGATACACACACAACCCAATTCCAAGAGGCTAAGGGAATTGAAAGAAAGgtacgtacagatagaaggtctgcgggactctggtgaccatcatccaacgt Alignment from Exonerate_coding2genome GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTTC-AAGAGGCTGAAGGAGCTGAATGAAAG gctaacacatcagccccatattacctgctgggactgtgttttaattatagGCTCATCAGTGGGTCAAGGAAGTTGTCCTGGATACACACACAACCCAATTCCAAGAGGCTAAGGGAATTGAAAGAAAGgtacgtacagatagaaggtctgcgggactctggtgaccatcatccaacgt Alignment from GeneWise GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAGGGAG gctaacacatcagccccatattacctgctgggactgtgttttaattatagGCTCATCAGTGGGTCAAGGAAGTTGTCCTGGATACACACACAACCCAATTCCAAGAGGCTAAGGGAATT---GAAAGAAAGgtacgtacagatagaaggtctgcgggactctggtgaccatcatccaacgt #### Plcb3_ID1905_26 --> 1 - 0 Original Alignment gGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAG-CATCTACGACAG taccaggagatttgtggcaatcagaaagtgctgtgaccttctgtcttcagaGGCAAGGCCACCAACTCAGAGGATGTGAAGGATGAAGAGGAAGCCAAACAGTATAGGGAGTTCCAGAACCAAAAAGCACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAAACCAAGCGGAAGCTGGAACCATCTACGACAGgtaggtgacaggtgaggggaatgtgacactgggggcaaggaccaacttcc Alignment from CESAR gGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAG-CATCTACGACAG taccaggagatttgtggcaatcagaaagtgctgtgaccttctgtcttcagaGGCAAGGCCACCAACTCAGAGGATGTGAAGGATGAAGAGGAAGCCAAACAGTATAGGGAGTTCCAGAACCAAAAAGCACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAAACCAAGCGGAAGCTGGAACCATCTACGACAGgtaggtgacaggtgaggggaatgtgacactgggggcaaggaccaacttcc Alignment from Spaln_aa2Genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAG-CATCTACGACAG taccaggagatttgtggcaatcagaaagtgctgtgaccttctgtcttcagAGGCAAGGCCACCAACTCAGAGGATGTGAAGGATGAAGAGGAAGCCAAACAGTATAGGGAGTTCCAGAACCAAAAAGCACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAAACCAAGCGGAAGCTGGAAcCATCTACGACAGgtaggtgacaggtgaggggaatgtgacactgggggcaaggaccaacttcc Alignment from Spaln_nt2Genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGC-ATCTACGACAG taccaggagatttgtggcaatcagaaagtgctgtgaccttctgtcttcagAGGCAAGGCCACCAACTCAGAGGATGTGAAGGATGAAGAGGAAGCCAAACAGTATAGGGAGTTCCAGAACCAAAAAGCACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAAACCAAGCGGAAGCTGGAACCATCTACGACAGgtaggtgacaggtgaggggaatgtgacactgggggcaaggaccaacttcc Alignment from Pairagon GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAG-CATCTACGACAG taccaggagatttgtggcaatcagaaagtgctgtgaccttctgtcttcagAGGCAAGGCCACCAACTCAGAGGATGTGAAGGATGAAGAGGAAGCCAAACAGTATAGGGAGTTCCAGAACCAAAAAGCACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAAACCAAGCGGAAGCTGGAACCATCTACGACAGgtaggtgacaggtgaggggaatgtgacactgggggcaaggaccaacttcc Alignment from Exonerate_protein2genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAG-CATCTACGACAG taccaggagatttgtggcaatcagaaagtgctgtgaccttctgtcttcagAGGCAAGGCCACCAACTCAGAGGATGTGAAGGATGAAGAGGAAGCCAAACAGTATAGGGAGTTCCAGAACCAAAAAGCACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAAACCAAGCGGAAGCTGGAACCATCTACGACAGgtaggtgacaggtgaggggaatgtgacactgggggcaaggaccaacttcc Alignment from Exonerate_coding2genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAG-CATCTACGACAG taccaggagatttgtggcaatcagaaagtgctgtgaccttctgtcttcagAGGCAAGGCCACCAACTCAGAGGATGTGAAGGATGAAGAGGAAGCCAAACAGTATAGGGAGTTCCAGAACCAAAAAGCACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAAACCAAGCGGAAGCTGGAACCATCTACGACAGgtaggtgacaggtgaggggaatgtgacactgggggcaaggaccaacttcc Alignment from GeneWise -GGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTG-GAGCATCTACGACAG taccaggagatttgtggcaatcagaaagtgctgtgaccttctgtcttcagAGGCAAGGCCACCAACTCAGAGGATGTGAAGGATGAAGAGGAAGCCAAACAGTATAGGGAGTTCCAGAACCAAAAAGCACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAAACCAAGCGGAAGCTGGAACCATCTACGACAGgtaggtgacaggtgaggggaatgtgacactgggggcaaggaccaacttcc #### Plcb3_ID1910_21 --> 2 - 1 Original Alignment gaTACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTT-ATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGg agcagcttcaaagtcttggcagagatccctgatgtaactgttctctgcaggaTACCACTATGTTTGCCTGCGAAATGAGGCTAACCAACCTTTGTGCTTGCCTGCCTTGCTTCATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGggttgtcgggacagggtaatggttttatgtgtaccttaggtacatggagtc Alignment from CESAR gaTACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTT-ATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGg agcagcttcaaagtcttggcagagatccctgatgtaactgttctctgcaggaTACCACTATGTTTGCCTGCGAAATGAGGCTAACCAACCTTTGTGCTTGCCTGCCTTGCTTCATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGggttgtcgggacagggtaatggttttatgtgtaccttaggtacatggagtc Alignment from Spaln_aa2Genome GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTT-ATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG agcagcttcaaagtcttggcagagatccctgatgtaactgttctctgcagGATACCACTATGTTTGCCTGCGAAATGAGGCTAACCAACCTTTGTGCTTGCCTGCCTTGCTTcATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGGgttgtcgggacagggtaatggttttatgtgtaccttaggtacatggagtc Alignment from Spaln_nt2Genome GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTT-ATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG agcagcttcaaagtcttggcagagatccctgatgtaactgttctctgcagGATACCACTATGTTTGCCTGCGAAATGAGGCTAACCAACCTTTGTGCTTGCCTGCCTTGCTTCATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGGgttgtcgggacagggtaatggttttatgtgtaccttaggtacatggagtc Alignment from Pairagon GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTT-ATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG agcagcttcaaagtcttggcagagatccctgatgtaactgttctctgcagGATACCACTATGTTTGCCTGCGAAATGAGGCTAACCAACCTTTGTGCTTGCCTGCCTTGCTTCATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGGgttgtcgggacagggtaatggttttatgtgtaccttaggtacatggagtc Alignment from Exonerate_protein2genome GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTT-ATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG agcagcttcaaagtcttggcagagatccctgatgtaactgttctctgcagGATACCACTATGTTTGCCTGCGAAATGAGGCTAACCAACCTTTGTGCTTGCCTGCCTTGCTTCATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGGgttgtcgggacagggtaatggttttatgtgtaccttaggtacatggagtc Alignment from Exonerate_coding2genome GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTGCTT-ATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG agcagcttcaaagtcttggcagagatccctgatgtaactgttctctgcagGATACCACTATGTTTGCCTGCGAAATGAGGCTAACCAACCTTTGTGCTTGCCTGCCTTGCTTCATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGGgttgtcgggacagggtaatggttttatgtgtaccttaggtacatggagtc Alignment from GeneWise GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTG-CTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG agcagcttcaaagtcttggcagagatccctgatgtaactgttctctgcagGATACCACTATGTTTGCCTGCGAAATGAGGCTAACCAACCTTTGTGCTTGCCTGCCTTGCTTCATATACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGGgttgtcgggacagggtaatggttttatgtgtaccttaggtacatggagtc #### Plcb3_ID1911_20 --> 0 - 1 Original Alignment GTTGTGCTGCCCACGCTGGCCTCACTT-CGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAg ggtccagcttggtggccgtggcgtcccaattttgaaggtctctttttcagGTTGTACTGCCCACACTGGCCTCACTTCCGCATTGCAGTCTTTGAGAAAGGTGGCAAATTTGTCGGGCACCGTACCCTACCTGTCTCTGCTATCCACTCAggtaaggccgggggctccggcactaaagcagcttcaaagtcttggcagaga Alignment from CESAR GTTGTGCTGCCCACGCTGGCCTCACTT-CGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAg ggtccagcttggtggccgtggcgtcccaattttgaaggtctctttttcagGTTGTACTGCCCACACTGGCCTCACTTCCGCATTGCAGTCTTTGAGAAAGGTGGCAAATTTGTCGGGCACCGTACCCTACCTGTCTCTGCTATCCACTCAggtaaggccgggggctccggcactaaagcagcttcaaagtcttggcagaga Alignment from Spaln_aa2Genome GTTGTGCTGCCCACGCTGGCCTCACTT-CGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ggtccagcttggtggccgtggcgtcccaattttgaaggtctctttttcagGTTGTACTGCCCACACTGGCCTCACTTcCGCATTGCAGTCTTTGAGAAAGGTGGCAAATTTGTCGGGCACCGTACCCTACCTGTCTCTGCTATCCACTCAGgtaaggccgggggctccggcactaaagcagcttcaaagtcttggcagaga Alignment from Spaln_nt2Genome GTTGTGCTGCCCACGCTGGCCTCACTT-CGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ggtccagcttggtggccgtggcgtcccaattttgaaggtctctttttcagGTTGTACTGCCCACACTGGCCTCACTTCCGCATTGCAGTCTTTGAGAAAGGTGGCAAATTTGTCGGGCACCGTACCCTACCTGTCTCTGCTATCCACTCAGgtaaggccgggggctccggcactaaagcagcttcaaagtcttggcagaga Alignment from Pairagon GTTGTGCTGCCCACGCTGGCCTCACTT-CGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ggtccagcttggtggccgtggcgtcccaattttgaaggtctctttttcagGTTGTACTGCCCACACTGGCCTCACTTCCGCATTGCAGTCTTTGAGAAAGGTGGCAAATTTGTCGGGCACCGTACCCTACCTGTCTCTGCTATCCACTCAGgtaaggccgggggctccggcactaaagcagcttcaaagtcttggcagaga Alignment from Exonerate_protein2genome GTTGTGCTGCCCACGCTGGCCTCACTT-CGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ggtccagcttggtggccgtggcgtcccaattttgaaggtctctttttcagGTTGTACTGCCCACACTGGCCTCACTTCCGCATTGCAGTCTTTGAGAAAGGTGGCAAATTTGTCGGGCACCGTACCCTACCTGTCTCTGCTATCCACTCAGgtaaggccgggggctccggcactaaagcagcttcaaagtcttggcagaga Alignment from Exonerate_coding2genome GTTGTGCTGCCCACGCTGGCCTCACTT-CGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCAG ggtccagcttggtggccgtggcgtcccaattttgaaggtctctttttcagGTTGTACTGCCCACACTGGCCTCACTTCCGCATTGCAGTCTTTGAGAAAGGTGGCAAATTTGTCGGGCACCGTACCCTACCTGTCTCTGCTATCCACTCAGgtaaggccgggggctccggcactaaagcagcttcaaagtcttggcagaga Alignment from GeneWise GTTGTGCTGCCCACGCTGGCCTCA-CTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCTGTCTCTGCTATCCGCTCA--------------------------------------------------- ggtccagcttggtggccgtggcgtcccaattttgaaggtctctttttcagGTTGTACTGCCCACACTGGCCTCACTTCCGCATTGCAGTCTTTGAGAAAGGTGGCAAATTTGTCGGGCACCGTACCCTACCTGTCTCTGCTATCCACTCAGGTAAGGCCGGGGGCTCCGGCACTAAAGCAGCTTCAAAGTCTTGGCAGAGA #### Plcb3_ID1913_18 --> 2 - 0 Original Alignment atTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGAC-AAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG atctctggctgtcccatgcttagaccctgatcctctcatctctcttccagatTTGCCAATGCAGCTCAACGCAGGCGTGGTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACCAAATCTTTTGATCCCTTCGCTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagcgggccaggcttggcatagggtgttttgaggaggatacaacagac Alignment from CESAR atTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGAC-AAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG atctctggctgtcccatgcttagaccctgatcctctcatctctcttccagatTTGCCAATGCAGCTCAACGCAGGCGTGGTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACCAAATCTTTTGATCCCTTCGCTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagcgggccaggcttggcatagggtgttttgaggaggatacaacagac Alignment from Spaln_aa2Genome ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGAC-AAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG atctctggctgtcccatgcttagaccctgatcctctcatctctcttccagATTTGCCAATGCAGCTCAACGCAGGCGTGGTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACcAAATCTTTTGATCCCTTCGCTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagcgggccaggcttggcatagggtgttttgaggaggatacaacagac Alignment from Spaln_nt2Genome ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGA-CAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG atctctggctgtcccatgcttagaccctgatcctctcatctctcttccagATTTGCCAATGCAGCTCAACGCAGGCGTGGTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACCAAATCTTTTGATCCCTTCGCTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagcgggccaggcttggcatagggtgttttgaggaggatacaacagac Alignment from Pairagon ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGA-CAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG atctctggctgtcccatgcttagaccctgatcctctcatctctcttccagATTTGCCAATGCAGCTCAACGCAGGCGTGGTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACCAAATCTTTTGATCCCTTCGCTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagcgggccaggcttggcatagggtgttttgaggaggatacaacagac Alignment from Exonerate_protein2genome ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGAC-AAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG atctctggctgtcccatgcttagaccctgatcctctcatctctcttccagATTTGCCAATGCAGCTCAACGCAGGCGTGGTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACCAAATCTTTTGATCCCTTCGCTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagcgggccaggcttggcatagggtgttttgaggaggatacaacagac Alignment from Exonerate_coding2genome ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGAC-AAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG atctctggctgtcccatgcttagaccctgatcctctcatctctcttccagATTTGCCAATGCAGCTCAACGCAGGCGTGGTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACCAAATCTTTTGATCCCTTCGCTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagcgggccaggcttggcatagggtgttttgaggaggatacaacagac Alignment from GeneWise ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGAC-AAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG atctctggctgtcccatgcttagaccctgatcctctcatctctcttccagATTTGCCAATGCAGCTCAACGCAGGCGTGGTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACCAAATCTTTTGATCCCTTCGCTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagcgggccaggcttggcatagggtgttttgaggaggatacaacagac #### Plcb3_ID1914_17 --> 1 - 1 Original Alignment aTACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCT-CAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGg gtagaaaatgatgcttctttttctatgaaatgatctcactttgtccttaggTACAACAGACAACAGCTCAGCCGGATCTACACTAAGGGCAAACAGGTGGACTCTTCTAACTACATGCCTCCACCTCTTTTGGAATGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGggtaggcgagctctagccctagcttagggatttttgccaagtaaagcaatt Alignment from CESAR aTACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCT-CAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGg gtagaaaatgatgcttctttttctatgaaatgatctcactttgtccttaggTACAACAGACAACAGCTCAGCCGGATCTACACTAAGGGCAAACAGGTGGACTCTTCTAACTACATGCCTCCACCTCTTTTGGAATGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGggtaggcgagctctagccctagcttagggatttttgccaagtaaagcaatt Alignment from Spaln_aa2Genome ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCT-CAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG gtagaaaatgatgcttctttttctatgaaatgatctcactttgtccttagGTACAACAGACAACAGCTCAGCCGGATCTACACTAAGGGCAAACAGGTGGACTCTTCTAACTACATGCCTcCACCTCTTTTGGAATGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGGgtaggcgagctctagccctagcttagggatttttgccaagtaaagcaatt Alignment from Spaln_nt2Genome ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCT-CAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG gtagaaaatgatgcttctttttctatgaaatgatctcactttgtccttagGTACAACAGACAACAGCTCAGCCGGATCTACACTAAGGGCAAACAGGTGGACTCTTCTAACTACATGCCTCCACCTCTTTTGGAATGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGGgtaggcgagctctagccctagcttagggatttttgccaagtaaagcaatt Alignment from Pairagon ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCT-CAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG gtagaaaatgatgcttctttttctatgaaatgatctcactttgtccttagGTACAACAGACAACAGCTCAGCCGGATCTACACTAAGGGCAAACAGGTGGACTCTTCTAACTACATGCCTCCACCTCTTTTGGAATGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGGgtaggcgagctctagccctagcttagggatttttgccaagtaaagcaatt Alignment from Exonerate_protein2genome ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCT-CAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG gtagaaaatgatgcttctttttctatgaaatgatctcactttgtccttagGTACAACAGACAACAGCTCAGCCGGATCTACACTAAGGGCAAACAGGTGGACTCTTCTAACTACATGCCTCCACCTCTTTTGGAATGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGGgtaggcgagctctagccctagcttagggatttttgccaagtaaagcaatt Alignment from Exonerate_coding2genome ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCT-CAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG gtagaaaatgatgcttctttttctatgaaatgatctcactttgtccttagGTACAACAGACAACAGCTCAGCCGGATCTACACTAAGGGCAAACAGGTGGACTCTTCTAACTACATGCCTCCACCTCTTTTGGAATGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGGgtaggcgagctctagccctagcttagggatttttgccaagtaaagcaatt Alignment from GeneWise ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCT-CAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGG gtagaaaatgatgcttctttttctatgaaatgatctcactttgtccttagGTACAACAGACAACAGCTCAGCCGGATCTACACTAAGGGCAAACAGGTGGACTCTTCTAACTACATGCCTCCACCTCTTTTGGAATGTGGGTTGCCAGCTTGTTGCCCTCAACTTCCAGACCTTGGgtaggcgagctctagccctagcttagggatttttgccaagtaaagcaatt #### Plcb3_ID1919_12 --> 1 - 0 Original Alignment gGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCG-CTGCTCATTGACCCTCTCGACAAATACCCG atcggccttagacccctgcagagccctgcacagtgtccttttttaatcagaGCAAAGCAGCAC---AAGATGGCTGAATACTGCCGCTCTATCTTTGGGGATGCACCTACTCATTGACCCTCTTGACAAATACCCAgtaagtgaaagtttggactggatccaggcatatgaaggtgaagggagctc Alignment from CESAR gGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCG-CTGCTCATTGACCCTCTCGACAAATACCCG atcggccttagacccctgcagagccctgcacagtgtccttttttaatcagaGCAAAGCAGCAC---AAGATGGCTGAATACTGCCGCTCTATCTTTGGGGATGCACCTACTCATTGACCCTCTTGACAAATACCCAgtaagtgaaagtttggactggatccaggcatatgaaggtgaagggagctc Alignment from Spaln_aa2Genome GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCG-CTGCTCATTGACCCTCTCGACAAATACCCG atcggccttagacccctgcagagccctgcacagtgtccttttttaatcagAGCAAAGCAGCAC---AAGATGGCTGAATACTGCCGCTCTATCTTTGGGGATGCAcCTACTCATTGACCCTCTTGACAAATACCCAgtaagtgaaagtttggactggatccaggcatatgaaggtgaagggagctc Alignment from Spaln_nt2Genome GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCGC-TGCTCATTGACCCTCTCGACAAATACCCG atcggccttagacccctgcagagccctgcacagtgtccttttttaatcagAGCAAAGCAGCA---CAAGATGGCTGAATACTGCCGCTCTATCTTTGGGGATGCACCTACTCATTGACCCTCTTGACAAATACCCAgtaagtgaaagtttggactggatccaggcatatgaaggtgaagggagctc Alignment from Pairagon GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCG-CTGCTCATTGACCCTCTCGACAAATACCCG atcggccttagacccctgcagagccctgcacagtgtccttttttaatcagAGCAAAGCAGCA---CAAGATGGCTGAATACTGCCGCTCTATCTTTGGGGATGCACCTACTCATTGACCCTCTTGACAAATACCCAgtaagtgaaagtttggactggatccaggcatatgaaggtgaagggagctc Alignment from Exonerate_protein2genome GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCG-CTGCTCATTGACCCTCTCGACAAATACCCG atcggccttagacccctgcagagccctgcacagtgtccttttttaatcagAGCAAAGCAGCAC---AAGATGGCTGAATACTGCCGCTCTATCTTTGGGGATGCACCTACTCATTGACCCTCTTGACAAATACCCAgtaagtgaaagtttggactggatccaggcatatgaaggtgaagggagctc Alignment from Exonerate_coding2genome GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGATGCG-CTGCTCATTGACCCTCTCGACAAATACCCG atcggccttagacccctgcagagccctgcacagtgtccttttttaatcagAGCAAAGCAGCAC---AAGATGGCTGAATACTGCCGCTCTATCTTTGGGGATGCACCTACTCATTGACCCTCTTGACAAATACCCAgtaagtgaaagtttggactggatccaggcatatgaaggtgaagggagctc Alignment from GeneWise GGCAAAGCAGCAGGCCAAGATGGCTGAGTACTGCCGCTCTATCTTTGGGGAT-GCGCTGCTCATTGACCCTCTCGACAAATACCCG atcggccttagacccctgcagagccctgcacagtgtccttttttaatcagAGCAAAGCAGCAC---AAGATGGCTGAATACTGCCGCTCTATCTTTGGGGATGCACCTACTCATTGACCCTCTTGACAAATACCCAgtaagtgaaagtttggactggatccaggcatatgaaggtgaagggagctc #### Plcb3_ID1923_8 --> 1 - 2 Original Alignment tGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGAT-ATTGACAAGATCCTGCTGGAGat tttggaactggctgaccaagattctcacttaaatactttcatatctatagtGAATCCATTCGCCCTGATGAATTTCCCTTGGAAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCAGATCATTGACAAGATCCTGCTGGAGatgtaagtaacttggaaatggattccatagggtggactctgtctccagtgca Alignment from CESAR tGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGAT-ATTGACAAGATCCTGCTGGAGat tttggaactggctgaccaagattctcacttaaatactttcatatctatagtGAATCCATTCGCCCTGATGAATTTCCCTTGGAAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCAGATCATTGACAAGATCCTGCTGGAGatgtaagtaacttggaaatggattccatagggtggactctgtctccagtgca Alignment from Spaln_aa2Genome TGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGAT-ATTGACAAGATCCTGCTGGAGAT tttggaactggctgaccaagattctcacttaaatactttcatatctatagTGAATCCATTCGCCCTGATGAATTTCCCTTGGAAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCAGATcATTGACAAGATCCTGCTGGAGATgtaagtaacttggaaatggattccatagggtggactctgtctccagtgca Alignment from Spaln_nt2Genome TGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGAT-ATTGACAAGATCCTGCTGGAGAT tttggaactggctgaccaagattctcacttaaatactttcatatctatagTGAATCCATTCGCCCTGATGAATTTCCCTTGGAAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCAGATCATTGACAAGATCCTGCTGGAGATgtaagtaacttggaaatggattccatagggtggactctgtctccagtgca Alignment from Pairagon TGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGAT-ATTGACAAGATCCTGCTGGAGAT tttggaactggctgaccaagattctcacttaaatactttcatatctatagTGAATCCATTCGCCCTGATGAATTTCCCTTGGAAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCAGATCATTGACAAGATCCTGCTGGAGATgtaagtaacttggaaatggattccatagggtggactctgtctccagtgca Alignment from Exonerate_protein2genome tttggaactggctgaccaagattctcacttaaatactttcatatctatagtgaatccattcgccctgatgaatttcccttggaagtttttgagcggttcttgaataaactgtgtctgcgcccagatcattgacaagatcctgctggagatgtaagtaacttggaaatggattccatagggtggactctgtctccagtgca Alignment from Exonerate_coding2genome tttggaactggctgaccaagattctcacttaaatactttcatatctatagtgaatccattcgccctgatgaatttcccttggaagtttttgagcggttcttgaataaactgtgtctgcgcccagatcattgacaagatcctgctggagatgtaagtaacttggaaatggattccatagggtggactctgtctccagtgca Alignment from GeneWise TGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGAT-ATTGACAAGATCCTGCTGGAGAT tttggaactggctgaccaagattctcacttaaatactttcatatctatagTGAATCCATTCGCCCTGATGAATTTCCCTTGGAAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCAGATCATTGACAAGATCCTGCTGGAGATgtaagtaacttggaaatggattccatagggtggactctgtctccagtgca #### Plcb3_ID1924_7 --> 1 - 2 Original Alignment cATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTG-GAGTCCTGTGGCCTCAACTTCAACCGAgt ttctgctgcctgcccattcattgacgctacaggtcctctctgttcctcagcATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTAGAGACTGCGCTGCGAGTCCTGTGGCCTCAACTTAAACCGGgtgtaaatgtcagggccagggtgtgggttaggcaggatgggcttttgcaatt Alignment from CESAR cATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTG-GAGTCCTGTGGCCTCAACTTCAACCGAgt ttctgctgcctgcccattcattgacgctacaggtcctctctgttcctcagcATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTAGAGACTGCGCTGCGAGTCCTGTGGCCTCAACTTAAACCGGgtgtaaatgtcagggccagggtgtgggttaggcaggatgggcttttgcaatt Alignment from Spaln_aa2Genome CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTG-GAGTCCTGTGGCCTCAACTTCAACCGAGT ttctgctgcctgcccattcattgacgctacaggtcctctctgttcctcagCATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTAGAGACTGCGCTGcGAGTCCTGTGGCCTCAACTTAAACCGGGTgtaaatgtcagggccagggtgtgggttaggcaggatgggcttttgcaatt Alignment from Spaln_nt2Genome CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTG-GAGTCCTGTGGCCTCAACTTCAACCGAGT ttctgctgcctgcccattcattgacgctacaggtcctctctgttcctcagCATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTAGAGACTGCGCTGCGAGTCCTGTGGCCTCAACTTAAACCGGGTgtaaatgtcagggccagggtgtgggttaggcaggatgggcttttgcaatt Alignment from Pairagon CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTG-GAGTCCTGTGGCCTCAACTTCAACCGAGT ttctgctgcctgcccattcattgacgctacaggtcctctctgttcctcagCATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTAGAGACTGCGCTGCGAGTCCTGTGGCCTCAACTTAAACCGGGTgtaaatgtcagggccagggtgtgggttaggcaggatgggcttttgcaatt Alignment from Exonerate_protein2genome ttctgctgcctgcccattcattgacgctacaggtcctctctgttcctcagcattctgaagatgttctcggcggacaagaagcgggtagagactgcgctgcgagtcctgtggcctcaacttaaaccgggtgtaaatgtcagggccagggtgtgggttaggcaggatgggcttttgcaatt Alignment from Exonerate_coding2genome ttctgctgcctgcccattcattgacgctacaggtcctctctgttcctcagcattctgaagatgttctcggcggacaagaagcgggtagagactgcgctgcgagtcctgtggcctcaacttaaaccgggtgtaaatgtcagggccagggtgtgggttaggcaggatgggcttttgcaatt Alignment from GeneWise CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCG-CTGGAGTCCTGTGGCCTCAACTTCAACCGAGT ttctgctgcctgcccattcattgacgctacaggtcctctctgttcctcagCATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTAGAGACTGCGCTGCGAGTCCTGTGGCCTCAACTTAAACCGGGTgtaaatgtcagggccagggtgtgggttaggcaggatgggcttttgcaatt #### Plcb3_ID1925_6 --> 1 - 2 Original Alignment aTACACGAAGCTGAAGCTGCAG-GTGAACCAGGATGGACGGATTCCGGTCAAGaa ccactgtgggagtttcactgacaagacctatcctttctctgttgccgcagaTACACGAAGCTGAAGCTGCAGCGTCAATCAGGATGGGCGGATTCCAGTCAAGaagtgctctcccattccctcgcagcatcttccctgctgccctgagattggtg Alignment from CESAR aTACACGAAGCTGAAGCTGCAG-GTGAACCAGGATGGACGGATTCCGGTCAAGaa ccactgtgggagtttcactgacaagacctatcctttctctgttgccgcagaTACACGAAGCTGAAGCTGCAGCGTCAATCAGGATGGGCGGATTCCAGTCAAGaagtgctctcccattccctcgcagcatcttccctgctgccctgagattggtg Alignment from Spaln_aa2Genome ATACACGAAGCTGAAGCTGCAG-GTGAACCAGGATGGACGGATTCCGGTCAAGAA ccactgtgggagtttcactgacaagacctatcctttctctgttgccgcagATACACGAAGCTGAAGCTGCAGcGTCAATCAGGATGGGCGGATTCCAGTCAAGAAgtgctctcccattccctcgcagcatcttccctgctgccctgagattggtg Alignment from Spaln_nt2Genome ATACACGAAGCTGAAGCTGCAG-GTGAACCAGGATGGACGGATTCCGGTCAAGAA ccactgtgggagtttcactgacaagacctatcctttctctgttgccgcagATACACGAAGCTGAAGCTGCAGCGTCAATCAGGATGGGCGGATTCCAGTCAAGAAgtgctctcccattccctcgcagcatcttccctgctgccctgagattggtg Alignment from Pairagon ATACACGAAGCTGAAGCTGCAG-GTGAACCAGGATGGACGGATTCCGGTCAAGAA ccactgtgggagtttcactgacaagacctatcctttctctgttgccgcagATACACGAAGCTGAAGCTGCAGCGTCAATCAGGATGGGCGGATTCCAGTCAAGAAgtgctctcccattccctcgcagcatcttccctgctgccctgagattggtg Alignment from Exonerate_protein2genome ccactgtgggagtttcactgacaagacctatcctttctctgttgccgcagatacacgaagctgaagctgcagcgtcaatcaggatgggcggattccagtcaagaagtgctctcccattccctcgcagcatcttccctgctgccctgagattggtg Alignment from Exonerate_coding2genome ccactgtgggagtttcactgacaagacctatcctttctctgttgccgcagatacacgaagctgaagctgcagcgtcaatcaggatgggcggattccagtcaagaagtgctctcccattccctcgcagcatcttccctgctgccctgagattggtg Alignment from GeneWise ATACACGAAGCTGAAGCTGCAG-GTGAACCAGGATGGACGGATTCCGGTCAAGAA ccactgtgggagtttcactgacaagacctatcctttctctgttgccgcagATACACGAAGCTGAAGCTGCAGCGTCAATCAGGATGGGCGGATTCCAGTCAAGAAgtgctctcccattccctcgcagcatcttccctgctgccctgagattggtg #### Plcb3_ID1927_4 --> 0 - 0 Original Alignment GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACA-TTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gctcctccccttcttgttcattctatactggatctgtcatgtatatatagGACCCTAAGATTCGAGAAGTT------TTTGGGGGCCCTGATACACGGCTGGAGGAGAGATTGATGACAGTGGTGGCTGGGCCAGATTTAGTAACTACCACACTTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtaagttggtgtcaactgacaaccaaggaagaaggggttggattgtaaga Alignment from CESAR GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACA-TTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gctcctccccttcttgttcattctatactggatctgtcatgtatatatagGACCCTAAGATTCGAGAAGTT------TTTGGGGGCCCTGATACACGGCTGGAGGAGAGATTGATGACAGTGGTGGCTGGGCCAGATTTAGTAACTACCACACTTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtaagttggtgtcaactgacaaccaaggaagaaggggttggattgtaaga Alignment from Spaln_aa2Genome GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACA-TTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gctcctccccttcttgttcattctatactggatctgtcatgtatatatagGACCCTAAGATTCGAGAAGTT------TTTGGGGGCCCTGATACACGGCTGGAGGAGAGATTGATGACAGTGGTGGCTGGGCCAGATTTAGTAACTACCACAcTTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtaagttggtgtcaactgacaaccaaggaagaaggggttggattgtaaga Alignment from Spaln_nt2Genome GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACA-TTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gctcctccccttcttgttcattctatactggatctgtcatgtatatatagGACCCTAAGATTCGAGAAGT------TTTTGGGGGCCCTGATACACGGCTGGAGGAGAGATTGATGACAGTGGTGGCTGGGCCAGATTTAGTAACTACCACACTTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtaagttggtgtcaactgacaaccaaggaagaaggggttggattgtaaga Alignment from Pairagon GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACA-TTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gctcctccccttcttgttcattctatactggatctgtcatgtatatatagGACCCTAAGATTCGAGAAGT------TTTTGGGGGCCCTGATACACGGCTGGAGGAGAGATTGATGACAGTGGTGGCTGGGCCAGATTTAGTAACTACCACACTTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtaagttggtgtcaactgacaaccaaggaagaaggggttggattgtaaga Alignment from Exonerate_protein2genome gctcctccccttcttgttcattctatactggatctgtcatgtatatataggaccctaagattcgagaagtttttgggggccctgatacacggctggaggagagattgatgacagtggtggctgggccagatttagtaactaccacacttcttgaacttcatggctgtgcaggatggcacagtcaaggtaagttggtgtcaactgacaaccaaggaagaaggggttggattgtaaga Alignment from Exonerate_coding2genome gctcctccccttcttgttcattctatactggatctgtcatgtatatataggaccctaagattcgagaagtttttgggggccctgatacacggctggaggagagattgatgacagtggtggctgggccagatttagtaactaccacacttcttgaacttcatggctgtgcaggatggcacagtcaaggtaagttggtgtcaactgacaaccaaggaagaaggggttggattgtaaga Alignment from GeneWise GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACC-ACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gctcctccccttcttgttcattctatactggatctgtcatgtatatatagGACCCTAAGATTCGAGAAGTT------TTTGGGGGCCCTGATACACGGCTGGAGGAGAGATTGATGACAGTGGTGGCTGGGCCAGATTTAGTAACTACCACACTTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtaagttggtgtcaactgacaaccaaggaagaaggggttggattgtaaga #### Plcb3_ID1928_3 --> 0 - 0 Original Alignment GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTAT-GCCCGCCTGCCCAAG aagatcaccttgtacctttaaggtataaaatatgtctgttccttccaaagGAGGTGGACACACTGGATATCAGCTCCATCAGAGACACAAGAACAGGTCGTTATCGCCCGCCTGCCCAAAgtaagtcggttagtattacagctgaataagcgccacggttaagatcacat Alignment from CESAR GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTAT-GCCCGCCTGCCCAAG aagatcaccttgtacctttaaggtataaaatatgtctgttccttccaaagGAGGTGGACACACTGGATATCAGCTCCATCAGAGACACAAGAACAGGTCGTTATCGCCCGCCTGCCCAAAgtaagtcggttagtattacagctgaataagcgccacggttaagatcacat Alignment from Spaln_aa2Genome GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTAT-GCCCGCCTGCCCAAG aagatcaccttgtacctttaaggtataaaatatgtctgttccttccaaagGAGGTGGACACACTGGATATCAGCTCCATCAGAGACACAAGAACAGGTCGTTATcGCCCGCCTGCCCAAAgtaagtcggttagtattacagctgaataagcgccacggttaagatcacat Alignment from Spaln_nt2Genome GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTAT-GCCCGCCTGCCCAAG aagatcaccttgtacctttaaggtataaaatatgtctgttccttccaaagGAGGTGGACACACTGGATATCAGCTCCATCAGAGACACAAGAACAGGTCGTTATCGCCCGCCTGCCCAAAgtaagtcggttagtattacagctgaataagcgccacggttaagatcacat Alignment from Pairagon GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTAT-GCCCGCCTGCCCAAG aagatcaccttgtacctttaaggtataaaatatgtctgttccttccaaagGAGGTGGACACACTGGATATCAGCTCCATCAGAGACACAAGAACAGGTCGTTATCGCCCGCCTGCCCAAAgtaagtcggttagtattacagctgaataagcgccacggttaagatcacat Alignment from Exonerate_protein2genome aagatcaccttgtacctttaaggtataaaatatgtctgttccttccaaaggaggtggacacactggatatcagctccatcagagacacaagaacaggtcgttatcgcccgcctgcccaaagtaagtcggttagtattacagctgaataagcgccacggttaagatcacat Alignment from Exonerate_coding2genome aagatcaccttgtacctttaaggtataaaatatgtctgttccttccaaaggaggtggacacactggatatcagctccatcagagacacaagaacaggtcgttatcgcccgcctgcccaaagtaagtcggttagtattacagctgaataagcgccacggttaagatcacat Alignment from GeneWise GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGGACAGGTCGTTAT---------GCCCGCCTGCCCAAG aagatcaccttgtacctttaaggtataaaatatgtctgttccttccaaagGAGGTGGACACACTGGATATCAGCTCCATCAGAGACACAAGAACAGGTCGTTATCGCCCGCCTGCCCAAAGTAAGTCGgttagtattacagctgaataagcgccacggttaagatcacat #### Pnlip_ID12748_7 --> 2 - 1 Original Alignment gaTTTGGAATGAGCCAGACTGTGGGTCAC-TTAGATTTCTTTCCAAACGGAGGAATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAg gagctttggataatgttgggggtgcatctctctaatgcaccatcctgaaggaTTTGGAATGAGCCAGACTGTGGGTCACCTTAGATTTCTTTCCGAATGAAGGTATTGAAATGCCAGGATGCCAGAAAAATATTCTTTCCCAAATTGTTGATATCGACGGGATCTGGGAAggtgagtattatgtgcatgaatttatcttaattgaggtatgcattgtgaat Alignment from CESAR gaTTTGGAATGAGCCAGACTGTGGGTCAC-TTAGATTTCTTTCCAAACGGAGGAATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAg gagctttggataatgttgggggtgcatctctctaatgcaccatcctgaaggaTTTGGAATGAGCCAGACTGTGGGTCACCTTAGATTTCTTTCCGAATGAAGGTATTGAAATGCCAGGATGCCAGAAAAATATTCTTTCCCAAATTGTTGATATCGACGGGATCTGGGAAggtgagtattatgtgcatgaatttatcttaattgaggtatgcattgtgaat Alignment from Spaln_aa2Genome GATTTGGAATGAGCCAGACTGTGGGTCAC-TTAGATTTCTTTCCAAACGGAGGAATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAG gagctttggataatgttgggggtgcatctctctaatgcaccatcctgaagGATTTGGAATGAGCCAGACTGTGGGTCACcTTAGATTTCTTTCCGAATGAAGGTATTGAAATGCCAGGATGCCAGAAAAATATTCTTTCCCAAATTGTTGATATCGACGGGATCTGGGAAGgtgagtattatgtgcatgaatttatcttaattgaggtatgcattgtgaat Alignment from Spaln_nt2Genome GATTTGGAATGAGCCAGACTGTGGGTCA-CTTAGATTTCTTTCCAAACGGAGGAATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAG gagctttggataatgttgggggtgcatctctctaatgcaccatcctgaagGATTTGGAATGAGCCAGACTGTGGGTCACCTTAGATTTCTTTCCGAATGAAGGTATTGAAATGCCAGGATGCCAGAAAAATATTCTTTCCCAAATTGTTGATATCGACGGGATCTGGGAAGgtgagtattatgtgcatgaatttatcttaattgaggtatgcattgtgaat Alignment from Pairagon GATTTGGAATGAGCCAGACTGTGGGTCA-CTTAGATTTCTTTCCAAACGGAGGAATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAG gagctttggataatgttgggggtgcatctctctaatgcaccatcctgaagGATTTGGAATGAGCCAGACTGTGGGTCACCTTAGATTTCTTTCCGAATGAAGGTATTGAAATGCCAGGATGCCAGAAAAATATTCTTTCCCAAATTGTTGATATCGACGGGATCTGGGAAGgtgagtattatgtgcatgaatttatcttaattgaggtatgcattgtgaat Alignment from Exonerate_protein2genome GATTTGGAATGAGCCAGACTGTGGGTCAC-TTAGATTTCTTTCCAAACGGAGGAATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAG gagctttggataatgttgggggtgcatctctctaatgcaccatcctgaagGATTTGGAATGAGCCAGACTGTGGGTCACCTTAGATTTCTTTCCGAATGAAGGTATTGAAATGCCAGGATGCCAGAAAAATATTCTTTCCCAAATTGTTGATATCGACGGGATCTGGGAAGgtgagtattatgtgcatgaatttatcttaattgaggtatgcattgtgaat Alignment from Exonerate_coding2genome GATTTGGAATGAGCCAGACTGTGGGTCAC-TTAGATTTCTTTCCAAACGGAGGAATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAG gagctttggataatgttgggggtgcatctctctaatgcaccatcctgaagGATTTGGAATGAGCCAGACTGTGGGTCACCTTAGATTTCTTTCCGAATGAAGGTATTGAAATGCCAGGATGCCAGAAAAATATTCTTTCCCAAATTGTTGATATCGACGGGATCTGGGAAGgtgagtattatgtgcatgaatttatcttaattgaggtatgcattgtgaat Alignment from GeneWise GATTTGGAATGAGCCAGACTGTGGGTCAC-TTAGATTTCTTTCCAAACGGAGGAATCGAAATGCCAGGATGCCAGAAGAATATTCTTTCCCAAATTGTTGACATCGACGGGATCTGGGAAG gagctttggataatgttgggggtgcatctctctaatgcaccatcctgaagGATTTGGAATGAGCCAGACTGTGGGTCACCTTAGATTTCTTTCCGAATGAAGGTATTGAAATGCCAGGATGCCAGAAAAATATTCTTTCCCAAATTGTTGATATCGACGGGATCTGGGAAGgtgagtattatgtgcatgaatttatcttaattgaggtatgcattgtgaat #### Pnlip_ID12751_10 --> 2 - 2 Original Alignment gtTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAG-GTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCaa tgcagaaacttttccctcccagataacaactagattgcattgtcttccaggtTGGCGGTACCAGGTAACTGTCACCCTCTCTGGACAGAAGCGTCACTGGGCATATCCTAGTTTCATTGTTTGGAAATGGAGGTAACTCTAAGCAGTATGAAGTTTTCaagtaatgaaaaatagaaagcatcacacagctctttttatatctaagtgtgt Alignment from CESAR gtTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAG-GTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCaa tgcagaaacttttccctcccagataacaactagattgcattgtcttccaggtTGGCGGTACCAGGTAACTGTCACCCTCTCTGGACAGAAGCGTCACTGGGCATATCCTAGTTTCATTGTTTGGAAATGGAGGTAACTCTAAGCAGTATGAAGTTTTCaagtaatgaaaaatagaaagcatcacacagctctttttatatctaagtgtgt Alignment from Spaln_aa2Genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAG-GTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA tgcagaaacttttccctcccagataacaactagattgcattgtcttccagGTTGGCGGTACCAGGTAACTGTCACCCTCTCTGGACAGAAGcGTCACTGGGCATATCCTAGTTTCATTGTTTGGAAATGGAGGTAACTCTAAGCAGTATGAAGTTTTCAAgtaatgaaaaatagaaagcatcacacagctctttttatatctaagtgtgt Alignment from Spaln_nt2Genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAG-GTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA tgcagaaacttttccctcccagataacaactagattgcattgtcttccagGTTGGCGGTACCAGGTAACTGTCACCCTCTCTGGACAGAAGCGTCACTGGGCATATCCTAGTTTCATTGTTTGGAAATGGAGGTAACTCTAAGCAGTATGAAGTTTTCAAgtaatgaaaaatagaaagcatcacacagctctttttatatctaagtgtgt Alignment from Pairagon GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAG-GTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA tgcagaaacttttccctcccagataacaactagattgcattgtcttccagGTTGGCGGTACCAGGTAACTGTCACCCTCTCTGGACAGAAGCGTCACTGGGCATATCCTAGTTTCATTGTTTGGAAATGGAGGTAACTCTAAGCAGTATGAAGTTTTCAAgtaatgaaaaatagaaagcatcacacagctctttttatatctaagtgtgt Alignment from Exonerate_protein2genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAG-GTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA tgcagaaacttttccctcccagataacaactagattgcattgtcttccagGTTGGCGGTACCAGGTAACTGTCACCCTCTCTGGACAGAAGCGTCACTGGGCATATCCTAGTTTCATTGTTTGGAAATGGAGGTAACTCTAAGCAGTATGAAGTTTTCAAgtaatgaaaaatagaaagcatcacacagctctttttatatctaagtgtgt Alignment from Exonerate_coding2genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAG-GTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA tgcagaaacttttccctcccagataacaactagattgcattgtcttccagGTTGGCGGTACCAGGTAACTGTCACCCTCTCTGGACAGAAGCGTCACTGGGCATATCCTAGTTTCATTGTTTGGAAATGGAGGTAACTCTAAGCAGTATGAAGTTTTCAAgtaatgaaaaatagaaagcatcacacagctctttttatatctaagtgtgt Alignment from GeneWise GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAG-GTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA tgcagaaacttttccctcccagataacaactagattgcattgtcttccagGTTGGCGGTACCAGGTAACTGTCACCCTCTCTGGACAGAAGCGTCACTGGGCATATCCTAGTTTCATTGTTTGGAAATGGAGGTAACTCTAAGCAGTATGAAGTTTTCAAgtaatgaaaaatagaaagcatcacacagctctttttatatctaagtgtgt #### Polr2g_ID2381_2 --> 0 - 2 Original Alignment ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAG-CTGTTTACCGAGGTGGAGGGGACCTGCACTGGGaa ctcctgtcccccatgcagctggctgggtacctttctgccctgttccctagATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCCTGTTTACTGAGGTGGAGGGGACCTGCACCGGGaagtaagtttcttcttcacagcaggttctgttgaatgcatccataatgacac Alignment from CESAR ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAG-CTGTTTACCGAGGTGGAGGGGACCTGCACTGGGaa ctcctgtcccccatgcagctggctgggtacctttctgccctgttccctagATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCCTGTTTACTGAGGTGGAGGGGACCTGCACCGGGaagtaagtttcttcttcacagcaggttctgttgaatgcatccataatgacac Alignment from Spaln_aa2Genome ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAG-CTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA ctcctgtcccccatgcagctggctgggtacctttctgccctgttccctagATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGcCTGTTTACTGAGGTGGAGGGGACCTGCACCGGGAAgtaagtttcttcttcacagcaggttctgttgaatgcatccataatgacac Alignment from Spaln_nt2Genome ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAG-CTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA ctcctgtcccccatgcagctggctgggtacctttctgccctgttccctagATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCCTGTTTACTGAGGTGGAGGGGACCTGCACCGGGAAgtaagtttcttcttcacagcaggttctgttgaatgcatccataatgacac Alignment from Pairagon ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAG-CTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA ctcctgtcccccatgcagctggctgggtacctttctgccctgttccctagATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCCTGTTTACTGAGGTGGAGGGGACCTGCACCGGGAAgtaagtttcttcttcacagcaggttctgttgaatgcatccataatgacac Alignment from Exonerate_protein2genome ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAG-CTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA ctcctgtcccccatgcagctggctgggtacctttctgccctgttccctagATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCCTGTTTACTGAGGTGGAGGGGACCTGCACCGGGAAgtaagtttcttcttcacagcaggttctgttgaatgcatccataatgacac Alignment from Exonerate_coding2genome ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAG-CTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA ctcctgtcccccatgcagctggctgggtacctttctgccctgttccctagATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCCTGTTTACTGAGGTGGAGGGGACCTGCACCGGGAAgtaagtttcttcttcacagcaggttctgttgaatgcatccataatgacac Alignment from GeneWise TTTTATCACATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAG-CTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA ctcctgtcccccatgcagctggctgggtacctttctgccctgttccctag---------ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCCTGTTTACTGAGGTGGAGGGGACCTGCACCGGGAAgtaagtttcttcttcacagcaggttctgttgaatgcatccataatgacac #### Ppp1ca_ID408_2 --> 2 - 1 Original Alignment tgCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAG-AACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTg accatcatggtctatggggtcagttcccaatgttgcttatcctttcacagtgCAGGGCTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGCAATGAAATTCGTGGTCTGTGTCTCAAATCCCGGGAGATTTTCCTAAGCCAGCCTATTCTTCTGGAACTTGAAGCACCGCTCAAGATCTGTggtgagccttgcatagaaccctcttcccagaacctggatgcccctgcaagt Alignment from CESAR tgCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAG-AACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTg accatcatggtctatggggtcagttcccaatgttgcttatcctttcacagtgCAGGGCTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGCAATGAAATTCGTGGTCTGTGTCTCAAATCCCGGGAGATTTTCCTAAGCCAGCCTATTCTTCTGGAACTTGAAGCACCGCTCAAGATCTGTggtgagccttgcatagaaccctcttcccagaacctggatgcccctgcaagt Alignment from Spaln_aa2Genome TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAG-AACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG accatcatggtctatggggtcagttcccaatgttgcttatcctttcacagTGCAGGGCTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGcAATGAAATTCGTGGTCTGTGTCTCAAATCCCGGGAGATTTTCCTAAGCCAGCCTATTCTTCTGGAACTTGAAGCACCGCTCAAGATCTGTGgtgagccttgcatagaaccctcttcccagaacctggatgcccctgcaagt Alignment from Spaln_nt2Genome TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAG-AACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG accatcatggtctatggggtcagttcccaatgttgcttatcctttcacagTGCAGGGCTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGCAATGAAATTCGTGGTCTGTGTCTCAAATCCCGGGAGATTTTCCTAAGCCAGCCTATTCTTCTGGAACTTGAAGCACCGCTCAAGATCTGTGgtgagccttgcatagaaccctcttcccagaacctggatgcccctgcaagt Alignment from Pairagon TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAG-AACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG accatcatggtctatggggtcagttcccaatgttgcttatcctttcacagTGCAGGGCTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGCAATGAAATTCGTGGTCTGTGTCTCAAATCCCGGGAGATTTTCCTAAGCCAGCCTATTCTTCTGGAACTTGAAGCACCGCTCAAGATCTGTGgtgagccttgcatagaaccctcttcccagaacctggatgcccctgcaagt Alignment from Exonerate_protein2genome TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAG-AACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG accatcatggtctatggggtcagttcccaatgttgcttatcctttcacagTGCAGGGCTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGCAATGAAATTCGTGGTCTGTGTCTCAAATCCCGGGAGATTTTCCTAAGCCAGCCTATTCTTCTGGAACTTGAAGCACCGCTCAAGATCTGTGgtgagccttgcatagaaccctcttcccagaacctggatgcccctgcaagt Alignment from Exonerate_coding2genome TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAG-AACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG accatcatggtctatggggtcagttcccaatgttgcttatcctttcacagTGCAGGGCTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGCAATGAAATTCGTGGTCTGTGTCTCAAATCCCGGGAGATTTTCCTAAGCCAGCCTATTCTTCTGGAACTTGAAGCACCGCTCAAGATCTGTGgtgagccttgcatagaaccctcttcccagaacctggatgcccctgcaagt Alignment from GeneWise TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACA-GAGAACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG accatcatggtctatggggtcagttcccaatgttgcttatcctttcacagTGCAGGGCTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGCAATGAAATTCGTGGTCTGTGTCTCAAATCCCGGGAGATTTTCCTAAGCCAGCCTATTCTTCTGGAACTTGAAGCACCGCTCAAGATCTGTGgtgagccttgcatagaaccctcttcccagaacctggatgcccctgcaagt #### Ppp1ca_ID409_3 --> 2 - 1 Original Alignment gtGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGC-ATTTATGGCTTCTATGATGAAt cacctggtttacttaatatacttccttatcccctttctttctttcctcaggcGACATCCAGGGACAGTACTATGACCTTCTACACCTGTTTGAGTATGGTGGCTTCCCACCAGAGAGCAACTACCTCTTCCTGGGGGATTATTTAGACCGGGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATAAGATCAGATACCTAGAGAATTTCTATGTACTTCGTGGAAACCATGAGTGTGCCAGCATTAACCGCCATTTATGGCTTTTATGACGCAtgtaaatgctttgaattctgccatcttcccggctcatttctggctcttcag Alignment from CESAR gtGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGC-ATTTATGGCTTCTATGATGAAt cacctggtttacttaatatacttccttatcccctttctttctttcctcaggcGACATCCAGGGACAGTACTATGACCTTCTACACCTGTTTGAGTATGGTGGCTTCCCACCAGAGAGCAACTACCTCTTCCTGGGGGATTATTTAGACCGGGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATAAGATCAGATACCTAGAGAATTTCTATGTACTTCGTGGAAACCATGAGTGTGCCAGCATTAACCGCCATTTATGGCTTTTATGACGCAtgtaaatgctttgaattctgccatcttcccggctcatttctggctcttcag Alignment from Spaln_aa2Genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGC-ATTTATGGCTTCTATGATGAAT cacctggtttacttaatatacttccttatcccctttctttctttcctcagGCGACATCCAGGGACAGTACTATGACCTTCTACACCTGTTTGAGTATGGTGGCTTCCCACCAGAGAGCAACTACCTCTTCCTGGGGGATTATTTAGACCGGGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATAAGATCAGATACCTAGAGAATTTCTATGTACTTCGTGGAAACCATGAGTGTGCCAGCATTAACCGCcATTTATGGCTTTTATGACGCATgtaaatgctttgaattctgccatcttcccggctcatttctggctcttcag Alignment from Spaln_nt2Genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCG-CATTTATGGCTTCTATGATGAAT cacctggtttacttaatatacttccttatcccctttctttctttcctcagGCGACATCCAGGGACAGTACTATGACCTTCTACACCTGTTTGAGTATGGTGGCTTCCCACCAGAGAGCAACTACCTCTTCCTGGGGGATTATTTAGACCGGGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATAAGATCAGATACCTAGAGAATTTCTATGTACTTCGTGGAAACCATGAGTGTGCCAGCATTAACCGCCATTTATGGCTTTTATGACGCATgtaaatgctttgaattctgccatcttcccggctcatttctggctcttcag Alignment from Pairagon GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCG-CATTTATGGCTTCTATGATGAAT cacctggtttacttaatatacttccttatcccctttctttctttcctcagGCGACATCCAGGGACAGTACTATGACCTTCTACACCTGTTTGAGTATGGTGGCTTCCCACCAGAGAGCAACTACCTCTTCCTGGGGGATTATTTAGACCGGGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATAAGATCAGATACCTAGAGAATTTCTATGTACTTCGTGGAAACCATGAGTGTGCCAGCATTAACCGCCATTTATGGCTTTTATGACGCATgtaaatgctttgaattctgccatcttcccggctcatttctggctcttcag Alignment from Exonerate_protein2genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGC-ATTTATGGCTTCTATGATGAAT cacctggtttacttaatatacttccttatcccctttctttctttcctcagGCGACATCCAGGGACAGTACTATGACCTTCTACACCTGTTTGAGTATGGTGGCTTCCCACCAGAGAGCAACTACCTCTTCCTGGGGGATTATTTAGACCGGGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATAAGATCAGATACCTAGAGAATTTCTATGTACTTCGTGGAAACCATGAGTGTGCCAGCATTAACCGCCATTTATGGCTTTTATGACGCATgtaaatgctttgaattctgccatcttcccggctcatttctggctcttcag Alignment from Exonerate_coding2genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGC-ATTTATGGCTTCTATGATGAAT cacctggtttacttaatatacttccttatcccctttctttctttcctcagGCGACATCCAGGGACAGTACTATGACCTTCTACACCTGTTTGAGTATGGTGGCTTCCCACCAGAGAGCAACTACCTCTTCCTGGGGGATTATTTAGACCGGGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATAAGATCAGATACCTAGAGAATTTCTATGTACTTCGTGGAAACCATGAGTGTGCCAGCATTAACCGCCATTTATGGCTTTTATGACGCATgtaaatgctttgaattctgccatcttcccggctcatttctggctcttcag Alignment from GeneWise GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATCAACCGC-ATTTATGGCTTCTATGATGAAT cacctggtttacttaatatacttccttatcccctttctttctttcctcagGCGACATCCAGGGACAGTACTATGACCTTCTACACCTGTTTGAGTATGGTGGCTTCCCACCAGAGAGCAACTACCTCTTCCTGGGGGATTATTTAGACCGGGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCTGACCTATAAGATCAGATACCTAGAGAATTTCTATGTACTTCGTGGAAACCATGAGTGTGCCAGCATTAACCGCCATTTATGGCTTTTATGACGCATgtaaatgctttgaattctgccatcttcccggctcatttctggctcttcag #### Ppp1ca_ID411_5 --> 2 - 0 Original Alignment gcCTGTCTCCAGACTTGCAATCCATGGAGCAGATTAGGCGTATTATGCGGCCCACAGACGTGCCTGACCAGGGCCTACTGTGTGATCTCCTGTGGTCTGACCCTGACAAGGATGTTCAAGGCTGGGGCGAGAATGACCGTGGTGTCTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCAC-AAGCATGATTTGGACCTCATCTGCAGAGCACATCAG aggatagcactcggtttaaggaatactactttttaacttttgtttttcaggcCTGTCTCCAGGCTTGCAATCCATGGAGCAAATCAGGCGTATTATGCGGCCCACAGATGTTCCAGACCAAGGCCTACTGTGTGATCTTCTGTGGTCTGATCCTGACAAGGATGTTCAAGGCTGGGGTGAGAATGACCGAGGTGTTTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACCAAGCATGATTTGGACCTCATTTGCAGAGCGCATCAGgtataatgatgagttagggatgggctgggagtggtggtctcatgcctaac Alignment from CESAR gcCTGTCTCCAGACTTGCAATCCATGGAGCAGATTAGGCGTATTATGCGGCCCACAGACGTGCCTGACCAGGGCCTACTGTGTGATCTCCTGTGGTCTGACCCTGACAAGGATGTTCAAGGCTGGGGCGAGAATGACCGTGGTGTCTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCAC-AAGCATGATTTGGACCTCATCTGCAGAGCACATCAG aggatagcactcggtttaaggaatactactttttaacttttgtttttcaggcCTGTCTCCAGGCTTGCAATCCATGGAGCAAATCAGGCGTATTATGCGGCCCACAGATGTTCCAGACCAAGGCCTACTGTGTGATCTTCTGTGGTCTGATCCTGACAAGGATGTTCAAGGCTGGGGTGAGAATGACCGAGGTGTTTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACCAAGCATGATTTGGACCTCATTTGCAGAGCGCATCAGgtataatgatgagttagggatgggctgggagtggtggtctcatgcctaac Alignment from Spaln_aa2Genome GCCTGTCTCCAGACTTGCAATCCATGGAGCAGATTAGGCGTATTATGCGGCCCACAGACGTGCCTGACCAGGGCCTACTGTGTGATCTCCTGTGGTCTGACCCTGACAAGGATGTTCAAGGCTGGGGCGAGAATGACCGTGGTGTCTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCAC-AAGCATGATTTGGACCTCATCTGCAGAGCACATCAG aggatagcactcggtttaaggaatactactttttaacttttgtttttcagGCCTGTCTCCAGGCTTGCAATCCATGGAGCAAATCAGGCGTATTATGCGGCCCACAGATGTTCCAGACCAAGGCCTACTGTGTGATCTTCTGTGGTCTGATCCTGACAAGGATGTTCAAGGCTGGGGTGAGAATGACCGAGGTGTTTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACcAAGCATGATTTGGACCTCATTTGCAGAGCGCATCAGgtataatgatgagttagggatgggctgggagtggtggtctcatgcctaac Alignment from Spaln_nt2Genome GCCTGTCTCCAGACTTGCAATCCATGGAGCAGATTAGGCGTATTATGCGGCCCACAGACGTGCCTGACCAGGGCCTACTGTGTGATCTCCTGTGGTCTGACCCTGACAAGGATGTTCAAGGCTGGGGCGAGAATGACCGTGGTGTCTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCA-CAAGCATGATTTGGACCTCATCTGCAGAGCACATCAG aggatagcactcggtttaaggaatactactttttaacttttgtttttcagGCCTGTCTCCAGGCTTGCAATCCATGGAGCAAATCAGGCGTATTATGCGGCCCACAGATGTTCCAGACCAAGGCCTACTGTGTGATCTTCTGTGGTCTGATCCTGACAAGGATGTTCAAGGCTGGGGTGAGAATGACCGAGGTGTTTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACCAAGCATGATTTGGACCTCATTTGCAGAGCGCATCAGgtataatgatgagttagggatgggctgggagtggtggtctcatgcctaac Alignment from Pairagon GCCTGTCTCCAGACTTGCAATCCATGGAGCAGATTAGGCGTATTATGCGGCCCACAGACGTGCCTGACCAGGGCCTACTGTGTGATCTCCTGTGGTCTGACCCTGACAAGGATGTTCAAGGCTGGGGCGAGAATGACCGTGGTGTCTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCA-CAAGCATGATTTGGACCTCATCTGCAGAGCACATCAG aggatagcactcggtttaaggaatactactttttaacttttgtttttcagGCCTGTCTCCAGGCTTGCAATCCATGGAGCAAATCAGGCGTATTATGCGGCCCACAGATGTTCCAGACCAAGGCCTACTGTGTGATCTTCTGTGGTCTGATCCTGACAAGGATGTTCAAGGCTGGGGTGAGAATGACCGAGGTGTTTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACCAAGCATGATTTGGACCTCATTTGCAGAGCGCATCAGgtataatgatgagttagggatgggctgggagtggtggtctcatgcctaac Alignment from Exonerate_protein2genome GCCTGTCTCCAGACTTGCAATCCATGGAGCAGATTAGGCGTATTATGCGGCCCACAGACGTGCCTGACCAGGGCCTACTGTGTGATCTCCTGTGGTCTGACCCTGACAAGGATGTTCAAGGCTGGGGCGAGAATGACCGTGGTGTCTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCAC-AAGCATGATTTGGACCTCATCTGCAGAGCACATCAG aggatagcactcggtttaaggaatactactttttaacttttgtttttcagGCCTGTCTCCAGGCTTGCAATCCATGGAGCAAATCAGGCGTATTATGCGGCCCACAGATGTTCCAGACCAAGGCCTACTGTGTGATCTTCTGTGGTCTGATCCTGACAAGGATGTTCAAGGCTGGGGTGAGAATGACCGAGGTGTTTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACCAAGCATGATTTGGACCTCATTTGCAGAGCGCATCAGgtataatgatgagttagggatgggctgggagtggtggtctcatgcctaac Alignment from Exonerate_coding2genome GCCTGTCTCCAGACTTGCAATCCATGGAGCAGATTAGGCGTATTATGCGGCCCACAGACGTGCCTGACCAGGGCCTACTGTGTGATCTCCTGTGGTCTGACCCTGACAAGGATGTTCAAGGCTGGGGCGAGAATGACCGTGGTGTCTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCAC-AAGCATGATTTGGACCTCATCTGCAGAGCACATCAG aggatagcactcggtttaaggaatactactttttaacttttgtttttcagGCCTGTCTCCAGGCTTGCAATCCATGGAGCAAATCAGGCGTATTATGCGGCCCACAGATGTTCCAGACCAAGGCCTACTGTGTGATCTTCTGTGGTCTGATCCTGACAAGGATGTTCAAGGCTGGGGTGAGAATGACCGAGGTGTTTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACCAAGCATGATTTGGACCTCATTTGCAGAGCGCATCAGgtataatgatgagttagggatgggctgggagtggtggtctcatgcctaac Alignment from GeneWise GCCTGTCTCCAGACTTGCAATCCATGGAGCAGATTAGGCGTATTATGCGGCCCACAGACGTGCCTGACCAGGGCCTACTGTGTGATCTCCTGTGGTCTGACCCTGACAAGGATGTTCAAGGCTGGGGCGAGAATGACCGTGGTGTCTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCAC-AAGCATGATTTGGACCTCATCTGCAGAGCACATCAG aggatagcactcggtttaaggaatactactttttaacttttgtttttcagGCCTGTCTCCAGGCTTGCAATCCATGGAGCAAATCAGGCGTATTATGCGGCCCACAGATGTTCCAGACCAAGGCCTACTGTGTGATCTTCTGTGGTCTGATCCTGACAAGGATGTTCAAGGCTGGGGTGAGAATGACCGAGGTGTTTCCTTTACCTTTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACCAAGCATGATTTGGACCTCATTTGCAGAGCGCATCAGgtataatgatgagttagggatgggctgggagtggtggtctcatgcctaac #### Ppp1r32_ID2842_9 --> 0 - 0 Original Alignment GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCT-CCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tgaaatataccctgaagtgagccttgcagtgaccccgacaccccctgcagGTTCCTACCTCAGCCCCACAGTCTGCCAGCATGAGCCACAGATCCTACCGGCCCCCCCCGGCGGATGCAACAGGCCAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAGgtaaggcttcctacactaatcctagtcccaacctgttctcttgagtcctg Alignment from CESAR GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAG-CCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tgaaatataccctgaagtgagccttgcagtgaccccgacaccccctgcagGTTCCTACCTCAGCCCCACAGTCTGCCAGCATGAGCCACAGATCCTACCGGCCCCCCCCGGCGGATGCAACAGGCCAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAGgtaaggcttcctacactaatcctagtcccaacctgttctcttgagtcctg Alignment from Spaln_aa2Genome GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAG-CCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tgaaatataccctgaagtgagccttgcagtgaccccgacaccccctgcagGTTCCTACCTCAGCCCCACAGTCTGCCAGCATGAGCCACAGATCCTACCGGcCCCCCCCGGCGGATGCAACAGGCCAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAGgtaaggcttcctacactaatcctagtcccaacctgttctcttgagtcctg Alignment from Spaln_nt2Genome GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAG-CGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tgaaatataccctgaagtgagccttgcagtgaccccgacaccccctgcagGTTCCTACCTCAGCCCCACAGTCTGCCAGCATGAGCCACAGATCCTACCGGCCCCCCCCGGCGGATGCAACAGGCCAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAGgtaaggcttcctacactaatcctagtcccaacctgttctcttgagtcctg Alignment from Pairagon GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAG-CCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tgaaatataccctgaagtgagccttgcagtgaccccgacaccccctgcagGTTCCTACCTCAGCCCCACAGTCTGCCAGCATGAGCCACAGATCCTACCGGCCCCCCCCGGCGGATGCAACAGGCCAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAGgtaaggcttcctacactaatcctagtcccaacctgttctcttgagtcctg Alignment from Exonerate_protein2genome GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAG-CCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tgaaatataccctgaagtgagccttgcagtgaccccgacaccccctgcagGTTCCTACCTCAGCCCCACAGTCTGCCAGCATGAGCCACAGATCCTACCGGCCCCCCCCGGCGGATGCAACAGGCCAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAGgtaaggcttcctacactaatcctagtcccaacctgttctcttgagtcctg Alignment from Exonerate_coding2genome GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAG-CCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tgaaatataccctgaagtgagccttgcagtgaccccgacaccccctgcagGTTCCTACCTCAGCCCCACAGTCTGCCAGCATGAGCCACAGATCCTACCGGCCCCCCCCGGCGGATGCAACAGGCCAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAGgtaaggcttcctacactaatcctagtcccaacctgttctcttgagtcctg Alignment from GeneWise GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCC-CAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tgaaatataccctgaagtgagccttgcagtgaccccgacaccccctgcagGTTCCTACCTCAGCCCCACAGTCTGCCAGCATGAGCCACAGATCCTACCGGCCCCCCCCGGCGGATGCAACAGGCCAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAGgtaaggcttcctacactaatcctagtcccaacctgttctcttgagtcctg #### Ppp1r32_ID2844_7 --> 0 - 0 Original Alignment GTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTAC-CTCCCTGTAACTCACCCTCAG gtctgccacacacatctactttccactgacacttccttctgtctctctagGTCCTTCATCCAGGGCGAAGTATCACCAAGTCAGACTACCCTTCCTCTAACTCACCCTCAGgttggttctgtgctgctaaggggacagggctgcctatgggtacaactatg Alignment from CESAR GTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTAC-CTCCCTGTAACTCACCCTCAG gtctgccacacacatctactttccactgacacttccttctgtctctctagGTCCTTCATCCAGGGCGAAGTATCACCAAGTCAGACTACCCTTCCTCTAACTCACCCTCAGgttggttctgtgctgctaaggggacagggctgcctatgggtacaactatg Alignment from Spaln_aa2Genome GTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTACCTCCCTGTAACTCACCCTCAGGGAAG gtctgccacacacatctactttccactgacacttccttctgtctctctagGTCCTTCATCCAGGGCGAAGTATCACCAAGTCAGACTACCCTTCCTCTAACTCACCCTCAGGTTGgttctgtgctgctaaggggacagggctgcctatgggtacaactatg Alignment from Spaln_nt2Genome GTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTACC-TCCCTGTAACTCACCCTCAG gtctgccacacacatctactttccactgacacttccttctgtctctctagGTCCTTCATCCAGGGCGAAGTATCACCAAGTCAGACTACCCTTCCTCTAACTCACCCTCAGgttggttctgtgctgctaaggggacagggctgcctatgggtacaactatg Alignment from Pairagon GTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTA-CCTCCCTGTAACTCACCCTCAG gtctgccacacacatctactttccactgacacttccttctgtctctctagGTCCTTCATCCAGGGCGAAGTATCACCAAGTCAGACTACCCTTCCTCTAACTCACCCTCAGgttggttctgtgctgctaaggggacagggctgcctatgggtacaactatg Alignment from Exonerate_protein2genome GTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTAC-CTCCCTGTAACTCACCCTCAG gtctgccacacacatctactttccactgacacttccttctgtctctctagGTCCTTCATCCAGGGCGAAGTATCACCAAGTCAGACTACCCTTCCTCTAACTCACCCTCAGgttggttctgtgctgctaaggggacagggctgcctatgggtacaactatg Alignment from Exonerate_coding2genome GTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTAC-CTCCCTGTAACTCACCCTCAG gtctgccacacacatctactttccactgacacttccttctgtctctctagGTCCTTCATCCAGGGCGAAGTATCACCAAGTCAGACTACCCTTCCTCTAACTCACCCTCAGgttggttctgtgctgctaaggggacagggctgcctatgggtacaactatg Alignment from GeneWise GTCCTCCATCCAGGACGGAGTATCACCAAGTCAGACTACCTCCCTGTAACTCACCCTCAGGGAAG gtctgccacacacatctactttccactgacacttccttctgtctctctagGTCCTTCATCCAGGGCGAAGTATCACCAAGTCAGACTACCCTTCCTCTAACTCACCCTCAGGTTGgttctgtgctgctaaggggacagggctgcctatgggtacaactatg #### Pprc1_ID9723_11 --> 1 - 0 Original Alignment gTACAGCTCTTACCGTGCAAAT-GACCATTACCAAAGGCAGAGAGTGCTACAGAAGGAGCGTGCAATA gggctgttatgcctgacttgtctgcagctgtgtaacatttctctctacaggTACAGCTCTTACCATGCAAATCGACCATTACCAAAGGCAAAGAGTGCTACAGAAGGAATGTGCCATTgtaggatgggtagtatgtcaggggggagggtgatgtgtgctgtgtgccag Alignment from CESAR gTACAGCTCTTACCGTGCAAAT-GACCATTACCAAAGGCAGAGAGTGCTACAGAAGGAGCGTGCAATA gggctgttatgcctgacttgtctgcagctgtgtaacatttctctctacaggTACAGCTCTTACCATGCAAATCGACCATTACCAAAGGCAAAGAGTGCTACAGAAGGAATGTGCCATTgtaggatgggtagtatgtcaggggggagggtgatgtgtgctgtgtgccag Alignment from Spaln_aa2Genome GTACAGCTCTTACCGTGCAAAT-GACCATTACCAAAGGCAGAGAGTGCTACAGAAGGAGCGTGCAATA gggctgttatgcctgacttgtctgcagctgtgtaacatttctctctacagGTACAGCTCTTACCATGCAAATcGACCATTACCAAAGGCAAAGAGTGCTACAGAAGGAATGTGCCATTgtaggatgggtagtatgtcaggggggagggtgatgtgtgctgtgtgccag Alignment from Spaln_nt2Genome GTACAGCTCTTACCGTGCAAAT-GACCATTACCAAAGGCAGAGAGTGCTACAGAAGGAGCGTGCAATA gggctgttatgcctgacttgtctgcagctgtgtaacatttctctctacagGTACAGCTCTTACCATGCAAATCGACCATTACCAAAGGCAAAGAGTGCTACAGAAGGAATGTGCCATTgtaggatgggtagtatgtcaggggggagggtgatgtgtgctgtgtgccag Alignment from Pairagon GTACAGCTCTTACCGTGCAAAT-GACCATTACCAAAGGCAGAGAGTGCTACAGAAGGAGCGTGCAATA gggctgttatgcctgacttgtctgcagctgtgtaacatttctctctacagGTACAGCTCTTACCATGCAAATCGACCATTACCAAAGGCAAAGAGTGCTACAGAAGGAATGTGCCATTgtaggatgggtagtatgtcaggggggagggtgatgtgtgctgtgtgccag Alignment from Exonerate_protein2genome GTACAGCTCTTACCGTGCAAAT-GACCATTACCAAAGGCAGAGAGTGCTACAGAAGGAGCGTGCAATA gggctgttatgcctgacttgtctgcagctgtgtaacatttctctctacagGTACAGCTCTTACCATGCAAATCGACCATTACCAAAGGCAAAGAGTGCTACAGAAGGAATGTGCCATTgtaggatgggtagtatgtcaggggggagggtgatgtgtgctgtgtgccag Alignment from Exonerate_coding2genome GTACAGCTCTTACCGTGCAAAT-GACCATTACCAAAGGCAGAGAGTGCTACAGAAGGAGCGTGCAATA gggctgttatgcctgacttgtctgcagctgtgtaacatttctctctacagGTACAGCTCTTACCATGCAAATCGACCATTACCAAAGGCAAAGAGTGCTACAGAAGGAATGTGCCATTgtaggatgggtagtatgtcaggggggagggtgatgtgtgctgtgtgccag Alignment from GeneWise GTACAGCTCTTACCGTGCA-AATGACCATTACCAAAGGCAGAGAGTGCTACAGAAGGAGCGTGCAATA gggctgttatgcctgacttgtctgcagctgtgtaacatttctctctacagGTACAGCTCTTACCATGCAAATCGACCATTACCAAAGGCAAAGAGTGCTACAGAAGGAATGTGCCATTgtaggatgggtagtatgtcaggggggagggtgatgtgtgctgtgtgccag #### Pprc1_ID9724_12 --> 0 - 2 Original Alignment GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCGGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGT-ACCATTCATTTTCGTGTCCAAgg tcaacagctgtagctgcagctcaaagtcattctgcattcactattttaagGAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCAGAGCTTAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTCACCATCCATTTTAGAGTGCAAgggtaagccttaaaggcaggttctctctgttgtgttttcctgttaaaattta Alignment from CESAR GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCGGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGT-ACCATTCATTTTCGTGTCCAAgg tcaacagctgtagctgcagctcaaagtcattctgcattcactattttaagGAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCAGAGCTTAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTCACCATCCATTTTAGAGTGCAAgggtaagccttaaaggcaggttctctctgttgtgttttcctgttaaaattta Alignment from Spaln_aa2Genome GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCGGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGT-ACCATTCATTTTCGTGTCCAAGG tcaacagctgtagctgcagctcaaagtcattctgcattcactattttaagGAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCAGAGCTTAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTcACCATCCATTTTAGAGTGCAAGGgtaagccttaaaggcaggttctctctgttgtgttttcctgttaaaattta Alignment from Spaln_nt2Genome GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCGGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGT-ACCATTCATTTTCGTGTCCAAGG tcaacagctgtagctgcagctcaaagtcattctgcattcactattttaagGAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCAGAGCTTAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTCACCATCCATTTTAGAGTGCAAGGgtaagccttaaaggcaggttctctctgttgtgttttcctgttaaaattta Alignment from Pairagon GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCGGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGT-ACCATTCATTTTCGTGTCCAAGG tcaacagctgtagctgcagctcaaagtcattctgcattcactattttaagGAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCAGAGCTTAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTCACCATCCATTTTAGAGTGCAAGGgtaagccttaaaggcaggttctctctgttgtgttttcctgttaaaattta Alignment from Exonerate_protein2genome GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCGGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGT-ACCATTCATTTTCGTGTCCAAGG tcaacagctgtagctgcagctcaaagtcattctgcattcactattttaagGAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCAGAGCTTAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTCACCATCCATTTTAGAGTGCAAGGgtaagccttaaaggcaggttctctctgttgtgttttcctgttaaaattta Alignment from Exonerate_coding2genome GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCGGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGT-ACCATTCATTTTCGTGTCCAAGG tcaacagctgtagctgcagctcaaagtcattctgcattcactattttaagGAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCAGAGCTTAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTCACCATCCATTTTAGAGTGCAAGGgtaagccttaaaggcaggttctctctgttgtgttttcctgttaaaattta Alignment from GeneWise GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCGGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGT-ACCATTCATTTTCGTGTCCAAGG tcaacagctgtagctgcagctcaaagtcattctgcattcactattttaagGAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCAGAGCTTAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTCACCATCCATTTTAGAGTGCAAGGgtaagccttaaaggcaggttctctctgttgtgttttcctgttaaaattta #### Prdx5_ID1852_5 --> 0 - 2 Original Alignment GCGACAGACTTATTATTGGATGATTCTTTGGTG-TCTCTCTTTGGGAATCGTCGGCTGAAAag gtcctgggcctggcagaggcttctggcccccaagcccttgttctctctagGTGACAGACCTATTATTGGATGATTCTCTGGTGCTCTCTCTTTGGGAACCATTGGCTGAAAaggtaagcgagaccccttcaccccaacctcacccccatgccgattggtgcta Alignment from CESAR GCGACAGACTTATTATTGGATGATTCTTTGGTG-TCTCTCTTTGGGAATCGTCGGCTGAAAag gtcctgggcctggcagaggcttctggcccccaagcccttgttctctctagGTGACAGACCTATTATTGGATGATTCTCTGGTGCTCTCTCTTTGGGAACCATTGGCTGAAAaggtaagcgagaccccttcaccccaacctcacccccatgccgattggtgcta Alignment from Spaln_aa2Genome GCGACAGACTTATTATTGGATGATTCTTTGGTG-TCTCTCTTTGGGAATCGTCGGCTGAAAAG gtcctgggcctggcagaggcttctggcccccaagcccttgttctctctagGTGACAGACCTATTATTGGATGATTCTCTGGTGcTCTCTCTTTGGGAACCATTGGCTGAAAAGgtaagcgagaccccttcaccccaacctcacccccatgccgattggtgcta Alignment from Spaln_nt2Genome GCGACAGACTTATTATTGGATGATTCTTTGGTG-TCTCTCTTTGGGAATCGTCGGCTGAAAAG gtcctgggcctggcagaggcttctggcccccaagcccttgttctctctagGTGACAGACCTATTATTGGATGATTCTCTGGTGCTCTCTCTTTGGGAACCATTGGCTGAAAAGgtaagcgagaccccttcaccccaacctcacccccatgccgattggtgcta Alignment from Pairagon GCGACAGACTTATTATTGGATGATTCTTTGGTG-TCTCTCTTTGGGAATCGTCGGCTGAAAAG gtcctgggcctggcagaggcttctggcccccaagcccttgttctctctagGTGACAGACCTATTATTGGATGATTCTCTGGTGCTCTCTCTTTGGGAACCATTGGCTGAAAAGgtaagcgagaccccttcaccccaacctcacccccatgccgattggtgcta Alignment from Exonerate_protein2genome GCGACAGACTTATTATTGGATGATTCTTTGGTG-TCTCTCTTTGGGAATCGTCGGCTGAAAAG gtcctgggcctggcagaggcttctggcccccaagcccttgttctctctagGTGACAGACCTATTATTGGATGATTCTCTGGTGCTCTCTCTTTGGGAACCATTGGCTGAAAAGgtaagcgagaccccttcaccccaacctcacccccatgccgattggtgcta Alignment from Exonerate_coding2genome GCGACAGACTTATTATTGGATGATTCTTTGGTG-TCTCTCTTTGGGAATCGTCGGCTGAAAAG gtcctgggcctggcagaggcttctggcccccaagcccttgttctctctagGTGACAGACCTATTATTGGATGATTCTCTGGTGCTCTCTCTTTGGGAACCATTGGCTGAAAAGgtaagcgagaccccttcaccccaacctcacccccatgccgattggtgcta Alignment from GeneWise GCGACAGACTTATTATTGGATGATTCTTTGGTG-TCTCTCTTTGGGAATCGTCGGCTGAAAAG gtcctgggcctggcagaggcttctggcccccaagcccttgttctctctagGTGACAGACCTATTATTGGATGATTCTCTGGTGCTCTCTCTTTGGGAACCATTGGCTGAAAAGgtaagcgagaccccttcaccccaacctcacccccatgccgattggtgcta #### Prpf19_ID3044_3 --> 2 - 0 Original Alignment ttGCTCACCCAATCCGA-CCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA agctccctgcatcctagttccttatactagctgccacctcctgcctacagtgGCACACCCAATCCGACCCCAAGCCTCCCTCTGCCACCAGTATCCCAGCCATTCTGAAGGCCTTGCAAGATGAGTGGgtaaatcctattgaattttccccgtccttccagGATGCAGTCATGCTGCA Alignment from CESAR ttGCTCACCCAATCCGA-CCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA agctccctgcatcctagttccttatactagctgccacctcctgcctacagtgGCACACCCAATCCGACCCCAAGCCTCCCTCTGCCACCAGTATCCCAGCCATTCTGAAGGCCTTGCAAGATGAGTGGgtaaatcctattgtgtttggtatttttttatagGATGCAGTCATGCTGCA Alignment from Spaln_aa2Genome TTGCTCACCCAATCCGA-CCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA agctccctgcatcctagttccttatactagctgccacctcctgcctacagTGGCACACCCAATCCGAcCCCAAGCCTCCCTCTGCCACCAGTATCCCAGCCATTCTGAAGGCCTTGCAAGATGAGTGGgtaaatcctattgaattttccccgtccttccagGATGCAGTCATGCTGCA Alignment from Spaln_nt2Genome TTGCTCACCCAATCCGACCC-AAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA agctccctgcatcctagttccttatactagctgccacctcctgcctacagTGGCACACCCAATCCGACCCCAAGCCTCCCTCTGCCACCAGTATCCCAGCCATTCTGAAGGCCTTGCAAGATGAGTGGgtaaatcctattgaattttccccgtccttccagGATGCAGTCATGCTGCA Alignment from Pairagon TTGCTCACCCAATCCGA-CCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA agctccctgcatcctagttccttatactagctgccacctcctgcctacagTGGCACACCCAATCCGACCCCAAGCCTCCCTCTGCCACCAGTATCCCAGCCATTCTGAAGGCCTTGCAAGATGAGTGGgtaaatcctattgaattttccccgtccttccagGATGCAGTCATGCTGCA Alignment from Exonerate_protein2genome TTGCTCACCCAATCCGA-CCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA agctccctgcatcctagttccttatactagctgccacctcctgcctacagTGGCACACCCAATCCGACCCCAAGCCTCCCTCTGCCACCAGTATCCCAGCCATTCTGAAGGCCTTGCAAGATGAGTGGgtaaatcctattgaattttccccgtccttccagGATGCAGTCATGCTGCA Alignment from Exonerate_coding2genome TTGCTCACCCAATCCGA-CCCAAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA agctccctgcatcctagttccttatactagctgccacctcctgcctacagTGGCACACCCAATCCGACCCCAAGCCTCCCTCTGCCACCAGTATCCCAGCCATTCTGAAGGCCTTGCAAGATGAGTGGgtaaatcctattgaattttccccgtccttccagGATGCAGTCATGCTGCA Alignment from GeneWise TTGCTCACCCAATCCGACCC-AAGCCTCCCTCCGCCACCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG---------------------------------GATGCAGTCATGCTGCA agctccctgcatcctagttccttatactagctgccacctcctgcctacagTGGCACACCCAATCCGACCCCAAGCCTCCCTCTGCCACCAGTATCCCAGCCATTCTGAAGGCCTTGCAAGATGAGTGGGTAAATCCTATTGAATTTTCCCCGTCCTTCCAGGATGCAGTCATGCTGCA #### Prpf19_ID3045_4 --> 0 - 1 Original Alignment CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCC-TGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAg CCTTGCAAGATGAGTGGgtaaatcctattgtgtttggtatttttttatagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATGCTGCCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAggtaagtcatatttcatcgtaatgtccctatctggcctcctttcccccttc Alignment from CESAR CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCC-TGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAg CCTTGCAAGATGAGTGGgtaaatcctattgtgtttggtatttttttatagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATGCTGCCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAggtaagtcatatttcatcgtaatgtccctatctgttaaatgtcaatcccaa Alignment from Spaln_aa2Genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCC-TGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtaaatcctattgtgtttggtatttttttatagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATGCTGCCcTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtaagtcatatttcatcgtaatgtccctatctggcctcctttcccccttc Alignment from Spaln_nt2Genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTG-CCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtaaatcctattgtgtttggtatttttttatagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATGCTGCCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtaagtcatatttcatcgtaatgtccctatctggcctcctttcccccttc Alignment from Pairagon CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTG-CCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtaaatcctattgtgtttggtatttttttatagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATGCTGCCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtaagtcatatttcatcgtaatgtccctatctggcctcctttcccccttc Alignment from Exonerate_protein2genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCC-TGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtaaatcctattgtgtttggtatttttttatagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATGCTGCCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtaagtcatatttcatcgtaatgtccctatctggcctcctttcccccttc Alignment from Exonerate_coding2genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCC-TGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtaaatcctattgtgtttggtatttttttatagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATGCTGCCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtaagtcatatttcatcgtaatgtccctatctggcctcctttcccccttc Alignment from GeneWise CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCT-GCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtaaatcctattgtgtttggtatttttttatagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATGCTGCCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtaagtcatatttcatcgtaatgtccctatctggcctcctttcccccttc #### Prpf19_ID3047_6 --> 0 - 0 Original Alignment GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACC-CCTGAGATTATCCAGAAG atggttgttgttgttgtgagttcttcccagggtctattgttgtttgccagGGAGCTGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCCTGAGATTATCCAGAAAgtaagttgagcacacctctcatgagactgcagtcccataattacaaccac Alignment from CESAR GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACC-CCTGAGATTATCCAGAAG atggttgttgttgttgtgagttcttcccagggtctattgttgtttgccagGGAGCTGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCCTGAGATTATCCAGAAAgtaagttgagcacacctctcatgagactgcagtcccataattacaaccac Alignment from Spaln_aa2Genome GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACC-CCTGAGATTATCCAGAAG atggttgttgttgttgtgagttcttcccagggtctattgttgtttgccagGGAGCTGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCcCCTGAGATTATCCAGAAAgtaagttgagcacacctctcatgagactgcagtcccataattacaaccac Alignment from Spaln_nt2Genome GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCC-CTGAGATTATCCAGAAG atggttgttgttgttgtgagttcttcccagggtctattgttgtttgccagGGAGCTGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCCTGAGATTATCCAGAAAgtaagttgagcacacctctcatgagactgcagtcccataattacaaccac Alignment from Pairagon GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGA-CCCCTGAGATTATCCAGAAG atggttgttgttgttgtgagttcttcccagggtctattgttgtttgccagGGAGCTGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCCTGAGATTATCCAGAAAgtaagttgagcacacctctcatgagactgcagtcccataattacaaccac Alignment from Exonerate_protein2genome GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACC-CCTGAGATTATCCAGAAG atggttgttgttgttgtgagttcttcccagggtctattgttgtttgccagGGAGCTGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCCTGAGATTATCCAGAAAgtaagttgagcacacctctcatgagactgcagtcccataattacaaccac Alignment from Exonerate_coding2genome GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACC-CCTGAGATTATCCAGAAG atggttgttgttgttgtgagttcttcccagggtctattgttgtttgccagGGAGCTGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCCTGAGATTATCCAGAAAgtaagttgagcacacctctcatgagactgcagtcccataattacaaccac Alignment from GeneWise GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATG-ACCCCTGAGATTATCCAGAAG atggttgttgttgttgtgagttcttcccagggtctattgttgtttgccagGGAGCTGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCCTGAGATTATCCAGAAAgtaagttgagcacacctctcatgagactgcagtcccataattacaaccac #### Prpf19_ID3049_8 --> 0 - 0 Original Alignment AGAGGAAAGACTGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTAC-CGGCAGGTGGCATCCCATGTG cgctttagttgctgttccttggggttttcttctctttttccttcccaaagAGAGGAAAGACCGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTACCCGGCAGGTGGCATCCCATGTGgtgtgggctaaaggagtcctactgttccccagacaagatggatgggcgag Alignment from CESAR AGAGGAAAGACTGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTAC-CGGCAGGTGGCATCCCATGTG cgctttagttgctgttccttggggttttcttctctttttccttcccaaagAGAGGAAAGACCGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTACCCGGCAGGTGGCATCCCATGTGgtgtgggctaaaggagtcctactgttccccagacaagatggatgggcgag Alignment from Spaln_aa2Genome AGAGGAAAGACTGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTAC-CGGCAGGTGGCATCCCATGTG cgctttagttgctgttccttggggttttcttctctttttccttcccaaagAGAGGAAAGACCGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTACcCGGCAGGTGGCATCCCATGTGgtgtgggctaaaggagtcctactgttccccagacaagatggatgggcgag Alignment from Spaln_nt2Genome AGAGGAAAGACTGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTAC-CGGCAGGTGGCATCCCATGTG cgctttagttgctgttccttggggttttcttctctttttccttcccaaagAGAGGAAAGACCGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTACCCGGCAGGTGGCATCCCATGTGgtgtgggctaaaggagtcctactgttccccagacaagatggatgggcgag Alignment from Pairagon AGAGGAAAGACTGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTA-CCGGCAGGTGGCATCCCATGTG cgctttagttgctgttccttggggttttcttctctttttccttcccaaagAGAGGAAAGACCGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTACCCGGCAGGTGGCATCCCATGTGgtgtgggctaaaggagtcctactgttccccagacaagatggatgggcgag Alignment from Exonerate_protein2genome AGAGGAAAGACTGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTAC-CGGCAGGTGGCATCCCATGTG cgctttagttgctgttccttggggttttcttctctttttccttcccaaagAGAGGAAAGACCGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTACCCGGCAGGTGGCATCCCATGTGgtgtgggctaaaggagtcctactgttccccagacaagatggatgggcgag Alignment from Exonerate_coding2genome AGAGGAAAGACTGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTAC-CGGCAGGTGGCATCCCATGTG cgctttagttgctgttccttggggttttcttctctttttccttcccaaagAGAGGAAAGACCGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTACCCGGCAGGTGGCATCCCATGTGgtgtgggctaaaggagtcctactgttccccagacaagatggatgggcgag Alignment from GeneWise AGAGGAAAGACTGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTACCGGCAGGTGGCATCCCATGTGGGT cgctttagttgctgttccttggggttttcttctctttttccttcccaaagAGAGGAAAGACCGTCCCCGAGGAGCTGGTGAAACCTGAAGAGCTCAGCAAGTACCCGGCAGGTGGCATCCCATGTGGTgtgggctaaaggagtcctactgttccccagacaagatggatgggcgag #### Prpf19_ID3050_9 --> 0 - 1 Original Alignment GGTCTACACAGTGCTAGCATTCCTGGGATTCTC-GCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTg ctgggaggcgactaggcatgaacaggttcttctgtgtggccttcttccagGGTCTACACAGTGCTAGTATTCCTGGGATTCTTCGCTCTCGACCTGTGTCCCTCAGACACTAACAAGATTCTCACTggtaaaggtaggcctgactaacacaattaaaaggaactatgggccctccat Alignment from CESAR GGTCTACACAGTGCTAGCATTCCTGGGATTCTC-GCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTg ctgggaggcgactaggcatgaacaggttcttctgtgtggccttcttccagGGTCTACACAGTGCTAGTATTCCTGGGATTCTTCGCTCTCGACCTGTGTCCCTCAGACACTAACAAGATTCTCACTggtaaaggtaggcctgactaacacaattaaaaggaactatgggccctccat Alignment from Spaln_aa2Genome GGTCTACACAGTGCTAGCATTCCTGGGATTCTC-GCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG ctgggaggcgactaggcatgaacaggttcttctgtgtggccttcttccagGGTCTACACAGTGCTAGTATTCCTGGGATTCTTcGCTCTCGACCTGTGTCCCTCAGACACTAACAAGATTCTCACTGgtaaaggtaggcctgactaacacaattaaaaggaactatgggccctccat Alignment from Spaln_nt2Genome GGTCTACACAGTGCTAGCATTCCTGGGATTC-TCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG ctgggaggcgactaggcatgaacaggttcttctgtgtggccttcttccagGGTCTACACAGTGCTAGTATTCCTGGGATTCTTCGCTCTCGACCTGTGTCCCTCAGACACTAACAAGATTCTCACTGgtaaaggtaggcctgactaacacaattaaaaggaactatgggccctccat Alignment from Pairagon GGTCTACACAGTGCTAGCATTCCTGGGATTC-TCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG ctgggaggcgactaggcatgaacaggttcttctgtgtggccttcttccagGGTCTACACAGTGCTAGTATTCCTGGGATTCTTCGCTCTCGACCTGTGTCCCTCAGACACTAACAAGATTCTCACTGgtaaaggtaggcctgactaacacaattaaaaggaactatgggccctccat Alignment from Exonerate_protein2genome GGTCTACACAGTGCTAGCATTCCTGGGATTCTC-GCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG ctgggaggcgactaggcatgaacaggttcttctgtgtggccttcttccagGGTCTACACAGTGCTAGTATTCCTGGGATTCTTCGCTCTCGACCTGTGTCCCTCAGACACTAACAAGATTCTCACTGgtaaaggtaggcctgactaacacaattaaaaggaactatgggccctccat Alignment from Exonerate_coding2genome GGTCTACACAGTGCTAGCATTCCTGGGATTCTC-GCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG ctgggaggcgactaggcatgaacaggttcttctgtgtggccttcttccagGGTCTACACAGTGCTAGTATTCCTGGGATTCTTCGCTCTCGACCTGTGTCCCTCAGACACTAACAAGATTCTCACTGgtaaaggtaggcctgactaacacaattaaaaggaactatgggccctccat Alignment from GeneWise GGTCTACACAGTGCTAGCATTCCTGGGATTCTC-GCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG ctgggaggcgactaggcatgaacaggttcttctgtgtggccttcttccagGGTCTACACAGTGCTAGTATTCCTGGGATTCTTCGCTCTCGACCTGTGTCCCTCAGACACTAACAAGATTCTCACTGgtaaaggtaggcctgactaacacaattaaaaggaactatgggccctccat #### Prpf19_ID3053_12 --> 0 - 1 Original Alignment TACTGGGCCTTC-TCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCt gaaggctaccagaccaacttgttattggcctttcctgctttgcttctcagTACTGGGCCTTCCTTTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGACGAGACCTCTGGCTGCtgtaagtgatcattgagacactgagcattacttgtactttgtcagtatgtt Alignment from CESAR TACTGGGCCTTC-TCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCt gaaggctaccagaccaacttgttattggcctttcctgctttgcttctcagTACTGGGCCTTCCTTTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGACGAGACCTCTGGCTGCtgtaagtgatcattgagacactgagcattacttgtactttgtcagtatgtt Alignment from Spaln_aa2Genome TACTGGGCCTTC-TCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT gaaggctaccagaccaacttgttattggcctttcctgctttgcttctcagTACTGGGCCTTCcTTTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGACGAGACCTCTGGCTGCTgtaagtgatcattgagacactgagcattacttgtactttgtcagtatgtt Alignment from Spaln_nt2Genome TACTGGGCCTTC-TCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT gaaggctaccagaccaacttgttattggcctttcctgctttgcttctcagTACTGGGCCTTCCTTTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGACGAGACCTCTGGCTGCTgtaagtgatcattgagacactgagcattacttgtactttgtcagtatgtt Alignment from Pairagon TACTGGGCCTT-CTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT gaaggctaccagaccaacttgttattggcctttcctgctttgcttctcagTACTGGGCCTTCCTTTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGACGAGACCTCTGGCTGCTgtaagtgatcattgagacactgagcattacttgtactttgtcagtatgtt Alignment from Exonerate_protein2genome TACTGGGCCTTC-TCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT gaaggctaccagaccaacttgttattggcctttcctgctttgcttctcagTACTGGGCCTTCCTTTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGACGAGACCTCTGGCTGCTgtaagtgatcattgagacactgagcattacttgtactttgtcagtatgtt Alignment from Exonerate_coding2genome TACTGGGCCTTC-TCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT gaaggctaccagaccaacttgttattggcctttcctgctttgcttctcagTACTGGGCCTTCCTTTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGACGAGACCTCTGGCTGCTgtaagtgatcattgagacactgagcattacttgtactttgtcagtatgtt Alignment from GeneWise TACTGGGCCTTC-TCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGACCTCCGGCTGCT gaaggctaccagaccaacttgttattggcctttcctgctttgcttctcagTACTGGGCCTTCCTTTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGACGAGACCTCTGGCTGCTgtaagtgatcattgagacactgagcattacttgtactttgtcagtatgtt #### Prpf19_ID3054_13 --> 2 - 0 Original Alignment ctCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACC-ATGGACTCCCAGATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactatactatactcctgcacatgtctgctttagctCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCCATGGACTCCCAGATTAAGATTTGGGACCTAAAGgtaagtggacatataggcacaacaggagggactagtgggggggaactgat Alignment from CESAR ctCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACC-ATGGACTCCCAGATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactatactatactcctgcacatgtctgctttagctCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCCATGGACTCCCAGATTAAGATTTGGGACCTAAAGgtaagtggacatataggcacaacaggagggactagtgggggggaactgat Alignment from Spaln_aa2Genome CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACC-ATGGACTCCCAGATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactatactatactcctgcacatgtctgctttagCTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCcATGGACTCCCAGATTAAGATTTGGGACCTAAAGgtaagtggacatataggcacaacaggagggactagtgggggggaactgat Alignment from Spaln_nt2Genome CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAAC-CATGGACTCCCAGATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactatactatactcctgcacatgtctgctttagCTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCCATGGACTCCCAGATTAAGATTTGGGACCTAAAGgtaagtggacatataggcacaacaggagggactagtgggggggaactgat Alignment from Pairagon CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAA-CCATGGACTCCCAGATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactatactatactcctgcacatgtctgctttagCTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCCATGGACTCCCAGATTAAGATTTGGGACCTAAAGgtaagtggacatataggcacaacaggagggactagtgggggggaactgat Alignment from Exonerate_protein2genome CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACC-ATGGACTCCCAGATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactatactatactcctgcacatgtctgctttagCTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCCATGGACTCCCAGATTAAGATTTGGGACCTAAAGgtaagtggacatataggcacaacaggagggactagtgggggggaactgat Alignment from Exonerate_coding2genome CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACC-ATGGACTCCCAGATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactatactatactcctgcacatgtctgctttagCTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCCATGGACTCCCAGATTAAGATTTGGGACCTAAAGgtaagtggacatataggcacaacaggagggactagtgggggggaactgat Alignment from GeneWise CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGA-ACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG cttcctgcagaccactgactatactatactcctgcacatgtctgctttagCTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCCATGGACTCCCAGATTAAGATTTGGGACCTAAAGgtaagtggacatataggcacaacaggagggactagtgggggggaactgat #### Prpf19_ID3055_14 --> 0 - 0 Original Alignment GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCC-ATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tcctcattaagtcagtggatatttcctttttcttttttttttcctcctagGAGCATACCAATGTGGCAAACTTCCCTGGCCATTCTGGCCCTCATTACCAGCATTGCCTTCTCTGAGAATGGGTACTACCTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTCAAAATGTTGCAGCTGGACAACAACTTTGAGgtaagttctcccccatttcttctgctctggttgagctaccacttgtgatg Alignment from CESAR GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCC-ATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tcctcattaagtcagtggatatttcctttttcttttttttttcctcctagGAGCATACCAATGTGGCAAACTTCCCTGGCCATTCTGGCCCTCATTACCAGCATTGCCTTCTCTGAGAATGGGTACTACCTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTCAAAATGTTGCAGCTGGACAACAACTTTGAGgtaagttctcccccatttcttctgctctggttgagctaccacttgtgatg Alignment from Spaln_aa2Genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCC-ATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tcctcattaagtcagtggatatttcctttttcttttttttttcctcctagGAGCATACCAATGTGGCAAACTTCCCTGGCCATTCTGGCCCTcATTACCAGCATTGCCTTCTCTGAGAATGGGTACTACCTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTCAAAATGTTGCAGCTGGACAACAACTTTGAGgtaagttctcccccatttcttctgctctggttgagctaccacttgtgatg Alignment from Spaln_nt2Genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGG-CCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tcctcattaagtcagtggatatttcctttttcttttttttttcctcctagGAGCATACCAATGTGGCAAACTTCCCTGGCCATTCTGGCCCTCATTACCAGCATTGCCTTCTCTGAGAATGGGTACTACCTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTCAAAATGTTGCAGCTGGACAACAACTTTGAGgtaagttctcccccatttcttctgctctggttgagctaccacttgtgatg Alignment from Pairagon GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCC-CATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tcctcattaagtcagtggatatttcctttttcttttttttttcctcctagGAGCATACCAATGTGGCAAACTTCCCTGGCCATTCTGGCCCTCATTACCAGCATTGCCTTCTCTGAGAATGGGTACTACCTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTCAAAATGTTGCAGCTGGACAACAACTTTGAGgtaagttctcccccatttcttctgctctggttgagctaccacttgtgatg Alignment from Exonerate_protein2genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCC-ATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tcctcattaagtcagtggatatttcctttttcttttttttttcctcctagGAGCATACCAATGTGGCAAACTTCCCTGGCCATTCTGGCCCTCATTACCAGCATTGCCTTCTCTGAGAATGGGTACTACCTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTCAAAATGTTGCAGCTGGACAACAACTTTGAGgtaagttctcccccatttcttctgctctggttgagctaccacttgtgatg Alignment from Exonerate_coding2genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCC-ATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tcctcattaagtcagtggatatttcctttttcttttttttttcctcctagGAGCATACCAATGTGGCAAACTTCCCTGGCCATTCTGGCCCTCATTACCAGCATTGCCTTCTCTGAGAATGGGTACTACCTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTCAAAATGTTGCAGCTGGACAACAACTTTGAGgtaagttctcccccatttcttctgctctggttgagctaccacttgtgatg Alignment from GeneWise GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCC-ATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGCAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tcctcattaagtcagtggatatttcctttttcttttttttttcctcctagGAGCATACCAATGTGGCAAACTTCCCTGGCCATTCTGGCCCTCATTACCAGCATTGCCTTCTCTGAGAATGGGTACTACCTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGAAAGTTGAAGAACTTCAAAATGTTGCAGCTGGACAACAACTTTGAGgtaagttctcccccatttcttctgctctggttgagctaccacttgtgatg #### Pygm_ID1679_3 --> 0 - 1 Original Alignment CTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCAATGGGGGC-CTGGGACGCCTGGCAg ggtgtcttatgttagtacttgggcttcattctccccacccctcctcacagCTGGGCTTGGACATGGAGGAGTTGGAGGAGATTGAGGAGGATGCAGGGTTGGGCAATGGGGGCCCTGGGACGCCTTGCAggtaagtccatagcttgcagaggtggggtatgggagagttactcactttgg Alignment from CESAR CTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCAATGGGGGC-CTGGGACGCCTGGCAg ggtgtcttatgttagtacttgggcttcattctccccacccctcctcacagCTGGGCTTGGACATGGAGGAGTTGGAGGAGATTGAGGAGGATGCAGGGTTGGGCAATGGGGGCCCTGGGACGCCTTGCAggtaagtccatagcttgcagaggtggggtatgggagagttactcactttgg Alignment from Spaln_aa2Genome CTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTGGCAG ggtgtcttatgttagtacttgggcttcattctccccacccctcctcacagCTGGGCTTGGACATGGAGGAGTTGGAGGAGATTGAGGAGGATGCAGGGTTGGGCAATGGGGGCCCTGGGACG---CCTTgcaggtaagtccatagcttgcagaggtggggtatgggagagttactcactttgg Alignment from Spaln_nt2Genome CTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCAATGGGGGCC-TGGGACGCCTGGCAG ggtgtcttatgttagtacttgggcttcattctccccacccctcctcacagCTGGGCTTGGACATGGAGGAGTTGGAGGAGATTGAGGAGGATGCAGGGTTGGGCAATGGGGGCCCTGGGACGCCTTGCAGgtaagtccatagcttgcagaggtggggtatgggagagttactcactttgg Alignment from Pairagon CTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCAATGGGGG-CCTGGGACGCCTGGCAG ggtgtcttatgttagtacttgggcttcattctccccacccctcctcacagCTGGGCTTGGACATGGAGGAGTTGGAGGAGATTGAGGAGGATGCAGGGTTGGGCAATGGGGGCCCTGGGACGCCTTGCAGgtaagtccatagcttgcagaggtggggtatgggagagttactcactttgg Alignment from Exonerate_protein2genome CTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCAATGGGGGC-CTGGGACGCCTGGCAG ggtgtcttatgttagtacttgggcttcattctccccacccctcctcacagCTGGGCTTGGACATGGAGGAGTTGGAGGAGATTGAGGAGGATGCAGGGTTGGGCAATGGGGGCCCTGGGACGCCTTGCAGgtaagtccatagcttgcagaggtggggtatgggagagttactcactttgg Alignment from Exonerate_coding2genome CTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCAATGGGGGC-CTGGGACGCCTGGCAG ggtgtcttatgttagtacttgggcttcattctccccacccctcctcacagCTGGGCTTGGACATGGAGGAGTTGGAGGAGATTGAGGAGGATGCAGGGTTGGGCAATGGGGGCCCTGGGACGCCTTGCAGgtaagtccatagcttgcagaggtggggtatgggagagttactcactttgg Alignment from GeneWise CTGGGCTTGGACATGGAGGAGTTGGAGGAGATCGAGGAGGATGCAGGGTTGGGCAATGGGGGCCTGGGACGCCTGGCA-- ggtgtcttatgttagtacttgggcttcattctccccacccctcctcacagCTGGGCTTGGACATGGAGGAGTTGGAGGAGATTGAGGAGGATGCAGGGTTGGGCAATGGGGGCCCTGGGACGCCTTGCAGgtaagtccatagcttgcagaggtggggtatgggagagttactcactttgg #### Pygm_ID1683_7 --> 2 - 0 Original Alignment tcAATGTTGGCGGCTACATCCAGGCT-GTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT ccctgcttgtaccatacccaaccccagctctgtttttcttttttaaacagtcAATGTTGGTGGCTACATCCAGGCTCGTGCTGGACCGAAACCTAGCTGAGAACATCTCACGTGTATTGTACCCCAATGATAATgtactgtaccctccaccagaagcctaaaacctaggggaccatgaagggga Alignment from CESAR tcAATGTTGGCGGCTACATCCAGGCT-GTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT ccctgcttgtaccatacccaaccccagctctgtttttcttttttaaacagtcAATGTTGGTGGCTACATCCAGGCTCGTGCTGGACCGAAACCTAGCTGAGAACATCTCACGTGTATTGTACCCCAATGATAATgtactgtaccctccaccagaagcctaaaacctaggggaccatgaagggga Alignment from Spaln_aa2Genome TCAATGTTGGCGGCTACATCCAGGCT-GTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT ccctgcttgtaccatacccaaccccagctctgtttttcttttttaaacagTCAATGTTGGTGGCTACATCCAGGCTcGTGCTGGACCGAAACCTAGCTGAGAACATCTCACGTGTATTGTACCCCAATGATAATgtactgtaccctccaccagaagcctaaaacctaggggaccatgaagggga Alignment from Spaln_nt2Genome TCAATGTTGGCGGCTACATCCAGGCT-GTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT ccctgcttgtaccatacccaaccccagctctgtttttcttttttaaacagTCAATGTTGGTGGCTACATCCAGGCTCGTGCTGGACCGAAACCTAGCTGAGAACATCTCACGTGTATTGTACCCCAATGATAATgtactgtaccctccaccagaagcctaaaacctaggggaccatgaagggga Alignment from Pairagon TCAATGTTGGCGGCTACATCCAGGCT-GTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT ccctgcttgtaccatacccaaccccagctctgtttttcttttttaaacagTCAATGTTGGTGGCTACATCCAGGCTCGTGCTGGACCGAAACCTAGCTGAGAACATCTCACGTGTATTGTACCCCAATGATAATgtactgtaccctccaccagaagcctaaaacctaggggaccatgaagggga Alignment from Exonerate_protein2genome TCAATGTTGGCGGCTACATCCAGGCT-GTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT ccctgcttgtaccatacccaaccccagctctgtttttcttttttaaacagTCAATGTTGGTGGCTACATCCAGGCTCGTGCTGGACCGAAACCTAGCTGAGAACATCTCACGTGTATTGTACCCCAATGATAATgtactgtaccctccaccagaagcctaaaacctaggggaccatgaagggga Alignment from Exonerate_coding2genome TCAATGTTGGCGGCTACATCCAGGCT-GTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT ccctgcttgtaccatacccaaccccagctctgtttttcttttttaaacagTCAATGTTGGTGGCTACATCCAGGCTCGTGCTGGACCGAAACCTAGCTGAGAACATCTCACGTGTATTGTACCCCAATGATAATgtactgtaccctccaccagaagcctaaaacctaggggaccatgaagggga Alignment from GeneWise TCAATGTTGGCGGCTACATCCAG-GCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT ccctgcttgtaccatacccaaccccagctctgtttttcttttttaaacagTCAATGTTGGTGGCTACATCCAGGCTCGTGCTGGACCGAAACCTAGCTGAGAACATCTCACGTGTATTGTACCCCAATGATAATgtactgtaccctccaccagaagcctaaaacctaggggaccatgaagggga #### Pygm_ID1685_9 --> 0 - 0 Original Alignment GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCCATCCCAGAGCTGATGAGGATT-CTGGTGGACCTGGAACGACTGGACTGGGACAAG caatagtaccctctgcctagaagtcatcgtgtgcctttcttacttttcagGTGGTGATCCAACTCAATGACACACATCACTCTTTGGCCATCCCGGAGCTGATGAGGATTCCCAGTAGACCTTGAACGACTAGACTGGGACAAGgtaagtcttgtcaacatcacccctggaaggacctgatctgtgacagggtg Alignment from CESAR GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCCATCCCAGAGCTGATGAGGATT-CTGGTGGACCTGGAACGACTGGACTGGGACAAG caatagtaccctctgcctagaagtcatcgtgtgcctttcttacttttcagGTGGTGATCCAACTCAATGACACACATCACTCTTTGGCCATCCCGGAGCTGATGAGGATTCCCAGTAGACCTTGAACGACTAGACTGGGACAAGgtaagtcttgtcaacatcacccctggaaggacctgatctgtgacagggtg Alignment from Spaln_aa2Genome GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCCATCCCAGAGCTGATGAGGATT-CTGGTGGACCTGGAACGACTGGACTGGGACAAG caatagtaccctctgcctagaagtcatcgtgtgcctttcttacttttcagGTGGTGATCCAACTCAATGACACACATCACTCTTTGGCCATCCCGGAGCTGATGAGGATTcCCAGTAGACCTTGAACGACTAGACTGGGACAAGgtaagtcttgtcaacatcacccctggaaggacctgatctgtgacagggtg Alignment from Spaln_nt2Genome GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCCATCCCAGAGCTGATGAGGATTCTG-GTGGACCTGGAACGACTGGACTGGGACAAG caatagtaccctctgcctagaagtcatcgtgtgcctttcttacttttcagGTGGTGATCCAACTCAATGACACACATCACTCTTTGGCCATCCCGGAGCTGATGAGGATTCCCAGTAGACCTTGAACGACTAGACTGGGACAAGgtaagtcttgtcaacatcacccctggaaggacctgatctgtgacagggtg Alignment from Pairagon GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCCATCCCAGAGCTGATGAGGATT-CTGGTGGACCTGGAACGACTGGACTGGGACAAG caatagtaccctctgcctagaagtcatcgtgtgcctttcttacttttcagGTGGTGATCCAACTCAATGACACACATCACTCTTTGGCCATCCCGGAGCTGATGAGGATTCCCAGTAGACCTTGAACGACTAGACTGGGACAAGgtaagtcttgtcaacatcacccctggaaggacctgatctgtgacagggtg Alignment from Exonerate_protein2genome GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCCATCCCAGAGCTGATGAGGATT-CTGGTGGACCTGGAACGACTGGACTGGGACAAG caatagtaccctctgcctagaagtcatcgtgtgcctttcttacttttcagGTGGTGATCCAACTCAATGACACACATCACTCTTTGGCCATCCCGGAGCTGATGAGGATTCCCAGTAGACCTTGAACGACTAGACTGGGACAAGgtaagtcttgtcaacatcacccctggaaggacctgatctgtgacagggtg Alignment from Exonerate_coding2genome GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCCATCCCAGAGCTGATGAGGATT-CTGGTGGACCTGGAACGACTGGACTGGGACAAG caatagtaccctctgcctagaagtcatcgtgtgcctttcttacttttcagGTGGTGATCCAACTCAATGACACACATCACTCTTTGGCCATCCCGGAGCTGATGAGGATTCCCAGTAGACCTTGAACGACTAGACTGGGACAAGgtaagtcttgtcaacatcacccctggaaggacctgatctgtgacagggtg Alignment from GeneWise GTGGCCATCCAGCTCAATGACACCCACCCCTCTTTGGCCATCCCAGAGCTGATGAGGATT-CTGGTGGACCTGGAACGACTGGACTGGGACAAG caatagtaccctctgcctagaagtcatcgtgtgcctttcttacttttcagGTGGTGATCCAACTCAATGACACACATCACTCTTTGGCCATCCCGGAGCTGATGAGGATTCCCAGTAGACCTTGAACGACTAGACTGGGACAAGgtaagtcttgtcaacatcacccctggaaggacctgatctgtgacagggtg #### Pygm_ID1686_10 --> 0 - 0 Original Alignment GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAG-CGTTTCCTTAAC gcaaagatgtgtgaaggtcaactgaaataattcacgaatccttttggcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCCGAAGCCCTGGAGCGCTGGCCTGTGCACCTCATGGAGACACTGCTGCCCCGTCACTTGCAGATAATTTATGAGATCAACCAGCTGTTTCCTAAATgtaagttagggacaatgtgagaggagccccagcacgagggagcatatgta Alignment from CESAR GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAG-CGTTTCCTTAAC gcaaagatgtgtgaaggtcaactgaaataattcacgaatccttttggcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCCGAAGCCCTGGAGCGCTGGCCTGTGCACCTCATGGAGACACTGCTGCCCCGTCACTTGCAGATAATTTATGAGATCAACCAGCTGTTTCCTAAATgtaagttagggacaatgtgagaggagccccagcacgagggagcatatgta Alignment from Spaln_aa2Genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAG-CGTTTCCTTAAC gcaaagatgtgtgaaggtcaactgaaataattcacgaatccttttggcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCCGAAGCCCTGGAGCGCTGGCCTGTGCACCTCATGGAGACACTGCTGCCCCGTCACTTGCAGATAATTTATGAGATCAACCAGcTGTTTCCTAAATgtaagttagggacaatgtgagaggagccccagcacgagggagcatatgta Alignment from Spaln_nt2Genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGC-GTTTCCTTAAC gcaaagatgtgtgaaggtcaactgaaataattcacgaatccttttggcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCCGAAGCCCTGGAGCGCTGGCCTGTGCACCTCATGGAGACACTGCTGCCCCGTCACTTGCAGATAATTTATGAGATCAACCAGCTGTTTCCTAAATgtaagttagggacaatgtgagaggagccccagcacgagggagcatatgta Alignment from Pairagon GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGC-GTTTCCTTAAC gcaaagatgtgtgaaggtcaactgaaataattcacgaatccttttggcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCCGAAGCCCTGGAGCGCTGGCCTGTGCACCTCATGGAGACACTGCTGCCCCGTCACTTGCAGATAATTTATGAGATCAACCAGCTGTTTCCTAAATgtaagttagggacaatgtgagaggagccccagcacgagggagcatatgta Alignment from Exonerate_protein2genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGT-TTCCTTAAC gcaaagatgtgtgaaggtcaactgaaataattcacgaatccttttggcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCCGAAGCCCTGGAGCGCTGGCCTGTGCACCTCATGGAGACACTGCTGCCCCGTCACTTGCAGATAATTTATGAGATCAACCAGCTGTTTCCTAAATgtaagttagggacaatgtgagaggagccccagcacgagggagcatatgta Alignment from Exonerate_coding2genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGT-TTCCTTAAC gcaaagatgtgtgaaggtcaactgaaataattcacgaatccttttggcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCCGAAGCCCTGGAGCGCTGGCCTGTGCACCTCATGGAGACACTGCTGCCCCGTCACTTGCAGATAATTTATGAGATCAACCAGCTGTTTCCTAAATgtaagttagggacaatgtgagaggagccccagcacgagggagcatatgta Alignment from GeneWise GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC- gcaaagatgtgtgaaggtcaactgaaataattcacgaatccttttggcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCCGAAGCCCTGGAGCGCTGGCCTGTGCACCTCATGGAGACACTGCTGCCCCGTCACTTGCAGATAATTTATGAGATCAACCAGCTGTTTCCTAAATgtaagttagggacaatgtgagaggagccccagcacgagggagcatatgta #### Pygm_ID1695_19 --> 1 - 0 Original Alignment gTTTAAAGTCTTT-GCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG gacctggcctttgcccttacagagctgtttacttttatttctctccacagaTTTAAAGTCTTTCGTAGATCATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGGGTTATACAACgtaacatgtccagcaaccaggggttgggagagccttgactcttgtgggga Alignment from CESAR gTTTAAAGTCTTT-GCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG gacctggcctttgcccttacagagctgtttacttttatttctctccacagaTTTAAAGTCTTTCGTAGATCATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGGGTTATACAACgtaacatgtccagcaaccaggggttgggagagccttgactcttgtgggga Alignment from Spaln_aa2Genome GTTTAAAGTCTTT-GCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG gacctggcctttgcccttacagagctgtttacttttatttctctccacagATTTAAAGTCTTTcGTAGATCATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGGGTTATACAACgtaacatgtccagcaaccaggggttgggagagccttgactcttgtgggga Alignment from Spaln_nt2Genome GTTTAAAGTCTTT-GCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG gacctggcctttgcccttacagagctgtttacttttatttctctccacagATTTAAAGTCTTTCGTAGATCATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGGGTTATACAACgtaacatgtccagcaaccaggggttgggagagccttgactcttgtgggga Alignment from Pairagon GTTTAAAGTCTTT-GCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG gacctggcctttgcccttacagagctgtttacttttatttctctccacagATTTAAAGTCTTTCGTAGATCATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGGGTTATACAACgtaacatgtccagcaaccaggggttgggagagccttgactcttgtgggga Alignment from Exonerate_protein2genome GTTTAAAGTC-TTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG gacctggcctttgcccttacagagctgtttacttttatttctctccacagATTTAAAGTCTTTCGTAGATCATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGGGTTATACAACgtaacatgtccagcaaccaggggttgggagagccttgactcttgtgggga Alignment from Exonerate_coding2genome GTTTAAAGTC-TTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG gacctggcctttgcccttacagagctgtttacttttatttctctccacagATTTAAAGTCTTTCGTAGATCATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGGGTTATACAACgtaacatgtccagcaaccaggggttgggagagccttgactcttgtgggga Alignment from GeneWise -------------------------CGGTTTAAAGTCTTTGCAGATTATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGAGTTGTACAAG gacctggcctttgcccttacagagCTGTTTACTTTTATTTCTCTCCACAGATTTAAAGTCTTTCGTAGATCATGAGGAATACATTAAATGCCAGGACAAAGTCAGTGGGTTATACAACgtaacatgtccagcaaccaggggttgggagagccttgactcttgtgggga #### Rasgrp2_ID1711_10 --> 0 - 0 Original Alignment CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATT-GAGAAGATGGTGGAG tagattaattccaactctaactctggttcttgttcctttctctgatatagCCTACCAGCCCTACCAGCTGCATGTCACCTCCCCGACCCCCCGTGTTGGAAGAGTGGACATCAGTTGCTAAACCTAATCTTGACCAGGCCTTAGTGGCAGAGCACATTCGAGAGGATGGTGGAGgcaagtgtgtgctggctttcctgaagccttacccagtgcccagtgggcca Alignment from CESAR CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATT-GAGAAGATGGTGGAG tagattaattccaactctaactctggttcttgttcctttctctgatatagCCTACCAGCCCTACCAGCTGCATGTCACCTCCCCGACCCCCCGTGTTGGAAGAGTGGACATCAGTTGCTAAACCTAATCTTGACCAGGCCTTAGTGGCAGAGCACATTCGAGAGGATGGTGGAGgcaagtgtgtgctggctttcctgaagccttacccagtgcccagtgggcca Alignment from Spaln_aa2Genome CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATT-GAGAAGATGGTGGAG tagattaattccaactctaactctggttcttgttcctttctctgatatagCCTACCAGCCCTACCAGCTGCATGTCACCTCCCCGACCCCCCGTGTTGGAAGAGTGGACATCAGTTGCTAAACCTAATCTTGACCAGGCCTTAGTGGCAGAGCACATTcGAGAGGATGGTGGAGgcaagtgtgtgctggctttcctgaagccttacccagtgcccagtgggcca Alignment from Spaln_nt2Genome CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATT-GAGAAGATGGTGGAG tagattaattccaactctaactctggttcttgttcctttctctgatatagCCTACCAGCCCTACCAGCTGCATGTCACCTCCCCGACCCCCCGTGTTGGAAGAGTGGACATCAGTTGCTAAACCTAATCTTGACCAGGCCTTAGTGGCAGAGCACATTCGAGAGGATGGTGGAGgcaagtgtgtgctggctttcctgaagccttacccagtgcccagtgggcca Alignment from Pairagon CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATT-GAGAAGATGGTGGAG tagattaattccaactctaactctggttcttgttcctttctctgatatagCCTACCAGCCCTACCAGCTGCATGTCACCTCCCCGACCCCCCGTGTTGGAAGAGTGGACATCAGTTGCTAAACCTAATCTTGACCAGGCCTTAGTGGCAGAGCACATTCGAGAGGATGGTGGAGgcaagtgtgtgctggctttcctgaagccttacccagtgcccagtgggcca Alignment from Exonerate_protein2genome CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATT-GAGAAGATGGTGGAG tagattaattccaactctaactctggttcttgttcctttctctgatatagCCTACCAGCCCTACCAGCTGCATGTCACCTCCCCGACCCCCCGTGTTGGAAGAGTGGACATCAGTTGCTAAACCTAATCTTGACCAGGCCTTAGTGGCAGAGCACATTCGAGAGGATGGTGGAGgcaagtgtgtgctggctttcctgaagccttacccagtgcccagtgggcca Alignment from Exonerate_coding2genome CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATT-GAGAAGATGGTGGAG tagattaattccaactctaactctggttcttgttcctttctctgatatagCCTACCAGCCCTACCAGCTGCATGTCACCTCCCCGACCCCCCGTGTTGGAAGAGTGGACATCAGTTGCTAAACCTAATCTTGACCAGGCCTTAGTGGCAGAGCACATTCGAGAGGATGGTGGAGgcaagtgtgtgctggctttcctgaagccttacccagtgcccagtgggcca Alignment from GeneWise CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG--------- tagattaattccaactctaactctggttcttgttcctttctctgatatagCCTACCAGCCCTACCAGCTGCATGTCACCTCCCCGACCCCCCGTGTTGGAAGAGTGGACATCAGTTGCTAAACCTAATCTTGACCAGGCCTTAGTGGCAGAGCACATTCGAGAGGATGGTGGAGGCAAGTGTgtgctggctttcctgaagccttacccagtgcccagtgggcca #### Rbp4_ID7524_3 --> 0 - 2 Original Alignment TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAG-GGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGag ctttgcaggtgggaggtggaacctagacaacacgtggcttctctctctagTTCTCAGGGCTCTGGTACGCTATTGCCAAAAAGGACCCCAAGGGGCTCTTTTTGCAAGACAATATCATTGCTGAGTTTTCTGTAGATGAGAAGCGGTCATATGAGCGCCACTGCCAAGGGACAGGTCCGTCTCCTGaggtatgagaccttgactggagtgttagataggacagggaaagagtatctta Alignment from CESAR TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAG-GGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGag ctttgcaggtgggaggtggaacctagacaacacgtggcttctctctctagTTCTCAGGGCTCTGGTACGCTATTGCCAAAAAGGACCCCAAGGGGCTCTTTTTGCAAGACAATATCATTGCTGAGTTTTCTGTAGATGAGAAGCGGTCATATGAGCGCCACTGCCAAGGGACAGGTCCGTCTCCTGaggtatgagaccttgactggagtgttagataggacagggaaagagtatctta Alignment from Spaln_aa2Genome TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAG-GGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG ctttgcaggtgggaggtggaacctagacaacacgtggcttctctctctagTTCTCAGGGCTCTGGTACGCTATTGCCAAAAAGGACCCCAAGGGGCTCTTTTTGCAAGACAATATCATTGCTGAGTTTTCTGTAGATGAGAAGcGGTCATATGAGCGCCACTGCCAAGGGACAGGTCCGTCTCCTGAGgtatgagaccttgactggagtgttagataggacagggaaagagtatctta Alignment from Spaln_nt2Genome TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAG-GGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG ctttgcaggtgggaggtggaacctagacaacacgtggcttctctctctagTTCTCAGGGCTCTGGTACGCTATTGCCAAAAAGGACCCCAAGGGGCTCTTTTTGCAAGACAATATCATTGCTGAGTTTTCTGTAGATGAGAAGCGGTCATATGAGCGCCACTGCCAAGGGACAGGTCCGTCTCCTGAGgtatgagaccttgactggagtgttagataggacagggaaagagtatctta Alignment from Pairagon TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAG-GGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG ctttgcaggtgggaggtggaacctagacaacacgtggcttctctctctagTTCTCAGGGCTCTGGTACGCTATTGCCAAAAAGGACCCCAAGGGGCTCTTTTTGCAAGACAATATCATTGCTGAGTTTTCTGTAGATGAGAAGCGGTCATATGAGCGCCACTGCCAAGGGACAGGTCCGTCTCCTGAGgtatgagaccttgactggagtgttagataggacagggaaagagtatctta Alignment from Exonerate_protein2genome TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAG-GGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG ctttgcaggtgggaggtggaacctagacaacacgtggcttctctctctagTTCTCAGGGCTCTGGTACGCTATTGCCAAAAAGGACCCCAAGGGGCTCTTTTTGCAAGACAATATCATTGCTGAGTTTTCTGTAGATGAGAAGCGGTCATATGAGCGCCACTGCCAAGGGACAGGTCCGTCTCCTGAGgtatgagaccttgactggagtgttagataggacagggaaagagtatctta Alignment from Exonerate_coding2genome TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAGAAG-GGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG ctttgcaggtgggaggtggaacctagacaacacgtggcttctctctctagTTCTCAGGGCTCTGGTACGCTATTGCCAAAAAGGACCCCAAGGGGCTCTTTTTGCAAGACAATATCATTGCTGAGTTTTCTGTAGATGAGAAGCGGTCATATGAGCGCCACTGCCAAGGGACAGGTCCGTCTCCTGAGgtatgagaccttgactggagtgttagataggacagggaaagagtatctta Alignment from GeneWise TTCTCTGGGCTCTGGTATGCCATCGCCAAAAAGGACCCCGAGGGTCTCTTTTTGCAAGACAACATCATCGCTGAGTTTTCTGTGGACGAG-AAGGGTCATATGAGCGCCACAGCCAAGGGACGAGTCCGTCTTCTGAG ctttgcaggtgggaggtggaacctagacaacacgtggcttctctctctagTTCTCAGGGCTCTGGTACGCTATTGCCAAAAAGGACCCCAAGGGGCTCTTTTTGCAAGACAATATCATTGCTGAGTTTTCTGTAGATGAGAAGCGGTCATATGAGCGCCACTGCCAAGGGACAGGTCCGTCTCCTGAGgtatgagaccttgactggagtgttagataggacagggaaagagtatctta #### Rbp4_ID7525_2 --> 0 - 0 Original Alignment GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTG-AGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggccctttacccctgggtgtgacttaaccgcctaccctagGGCAGTCTCCGAGGTGAGATGGCATGGGTGTGGGCACTTGTGCTCCTGGCAGCTCTGGGAGGTGGCAGTGCAGAGCATGAC------TTGCAGCAGCTTCCGAGTTAAAGAAAACTTTGACAAGGCTCATgtacctatcagcccacttttcccaactttgcaggtgggaggtggaaccta Alignment from CESAR GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGAC-TGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggccctttacccctgggtgtgacttaaccgcctaccctagGGCAGTCTCCGAGGTGAGATGGCATGGGTGTGGGCACTTGTGCTCCTGGCAGCTCTGGGAGGTGGCAGTGCAGAGCATGACTTGC------AGCAGCTTCCGAGTTAAAGAAAACTTTGACAAGGCTCATgtacctatcagcccacttttcccaactttgcaggtgggaggtggaaccta Alignment from Spaln_aa2Genome GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGAC-TGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggccctttacccctgggtgtgacttaaccgcctaccctagGGCAGTCTCCGAGGTGAGATGGCATGGGTGTGGGCACTTGTGCTCCTGGCAGCTCTGGGAGGTGGCAGTGCAGAGCATGACtTGC------AGCAGCTTCCGAGTTAAAGAAAACTTTGACAAGGCTCATgtacctatcagcccacttttcccaactttgcaggtgggaggtggaaccta Alignment from Spaln_nt2Genome GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTG-AGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggccctttacccctgggtgtgacttaaccgcctaccctagGGCAGTCTCCGAGGTGAGATGGCATGGGTGTGGGCACTTGTGCTCCTGGCAGCTCTGGGAGGTGGCAGTGCAGAGCATGACT------TGCAGCAGCTTCCGAGTTAAAGAAAACTTTGACAAGGCTCATgtacctatcagcccacttttcccaactttgcaggtgggaggtggaaccta Alignment from Pairagon GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGAC-TGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggccctttacccctgggtgtgacttaaccgcctaccctagGGCAGTCTCCGAGGTGAGATGGCATGGGTGTGGGCACTTGTGCTCCTGGCAGCTCTGGGAGGTGGCAGTGCAGAGCATGACTTGC------AGCAGCTTCCGAGTTAAAGAAAACTTTGACAAGGCTCATgtacctatcagcccacttttcccaactttgcaggtgggaggtggaaccta Alignment from Exonerate_protein2genome GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGAC-TGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggccctttacccctgggtgtgacttaaccgcctaccctagGGCAGTCTCCGAGGTGAGATGGCATGGGTGTGGGCACTTGTGCTCCTGGCAGCTCTGGGAGGTGGCAGTGCAGAGCATGACTTGC------AGCAGCTTCCGAGTTAAAGAAAACTTTGACAAGGCTCATgtacctatcagcccacttttcccaactttgcaggtgggaggtggaaccta Alignment from Exonerate_coding2genome GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGAC-TGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggccctttacccctgggtgtgacttaaccgcctaccctagGGCAGTCTCCGAGGTGAGATGGCATGGGTGTGGGCACTTGTGCTCCTGGCAGCTCTGGGAGGTGGCAGTGCAGAGCATGACTTGC------AGCAGCTTCCGAGTTAAAGAAAACTTTGACAAGGCTCATgtacctatcagcccacttttcccaactttgcaggtgggaggtggaaccta Alignment from GeneWise GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGC-GACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggccctttacccctgggtgtgacttaaccgcctaccctagGGCAGTCTCCGAGGTGAGATGGCATGGGTGTGGGCACTTGTGCTCCTGGCAGCTCTGGGAGGTGGCAGTGCAGAGCATGACTTGC------AGCAGCTTCCGAGTTAAAGAAAACTTTGACAAGGCTCATgtacctatcagcccacttttcccaactttgcaggtgggaggtggaaccta #### Rce1_ID576_6 --> 2 - 1 Original Alignment TCTTTTTTGGAGTCg ccCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAG-AGCAGTGTGGGAAGTATCTTCGTGTCTGCAg TCTTTTTTGGAGTTggtaagtctcaccttgtgtccctgccccctttgcagccCATTTTCACCACATTATTGAGCAGTTACGCTTCCGCCAGCAGCAGTGTGGGGAGTATCTTTGTGTCTGCAggtttgtccctggaaacatacttagttgaccagggggacaaagggtagagt Alignment from CESAR TCTTTTTTGGAGTCg ccCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAG-AGCAGTGTGGGAAGTATCTTCGTGTCTGCAg TCTTTTTTGGAGTTggtacgtctcaccttgtgtccctgccccctttgcagccCATTTTCACCACATTATTGAGCAGTTACGCTTCCGCCAGCAGCAGTGTGGGGAGTATCTTTGTGTCTGCAggtttgtccctggaaacatacttagttgaccagggggacaaagggtagagt Alignment from Spaln_aa2Genome TCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAG-AGCAGTGTGGGAAGTATCTTCGTGTCTGCAG TCTTTTTTGGAGTTGgtaagtctcaccttgtgtccctgccccctttgcagCCCATTTTCACCACATTATTGAGCAGTTACGCTTCCGCCAGcAGCAGTGTGGGGAGTATCTTTGTGTCTGCAGgtttgtccctggaaacatacttagttgaccagggggacaaagggtagagt Alignment from Spaln_nt2Genome TCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAG-AGCAGTGTGGGAAGTATCTTCGTGTCTGCAG TCTTTTTTGGAGTTGgtaagtctcaccttgtgtccctgccccctttgcagCCCATTTTCACCACATTATTGAGCAGTTACGCTTCCGCCAGCAGCAGTGTGGGGAGTATCTTTGTGTCTGCAGgtttgtccctggaaacatacttagttgaccagggggacaaagggtagagt Alignment from Pairagon TCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAG-AGCAGTGTGGGAAGTATCTTCGTGTCTGCAG TCTTTTTTGGAGTTGgtaagtctcaccttgtgtccctgccccctttgcagCCCATTTTCACCACATTATTGAGCAGTTACGCTTCCGCCAGCAGCAGTGTGGGGAGTATCTTTGTGTCTGCAGgtttgtccctggaaacatacttagttgaccagggggacaaagggtagagt Alignment from Exonerate_protein2genome TCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAG-AGCAGTGTGGGAAGTATCTTCGTGTCTGCAG TCTTTTTTGGAGTTGgtaagtctcaccttgtgtccctgccccctttgcagCCCATTTTCACCACATTATTGAGCAGTTACGCTTCCGCCAGCAGCAGTGTGGGGAGTATCTTTGTGTCTGCAGgtttgtccctggaaacatacttagttgaccagggggacaaagggtagagt Alignment from Exonerate_coding2genome TCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAG-AGCAGTGTGGGAAGTATCTTCGTGTCTGCAG TCTTTTTTGGAGTTGgtaagtctcaccttgtgtccctgccccctttgcagCCCATTTTCACCACATTATTGAGCAGTTACGCTTCCGCCAGCAGCAGTGTGGGGAGTATCTTTGTGTCTGCAGgtttgtccctggaaacatacttagttgaccagggggacaaagggtagagt Alignment from GeneWise TCTTTTTTGGAGTCGCCCATTTTCACCACATT------------------------------------ATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG TCTTTTTTGGAGTTGGTAAGTCTCACCTTGTGTCCCTGCCCCCTTTGCAGCCCATTTTCACCACATTATTGAGCAGTTACGCTTCCGCCAGCAGCAGTGTGGGGAGTATCTTTGTGTCTGCAGgtttgtccctggaaacatacttagttgaccagggggacaaagggtagagt #### Rce1_ID577_5 --> 2 - 1 Original Alignment ccCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCT-GCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCg ccCATTTTCACCACA tgagggaccagatctttctactaacctacttccttctctccttattatagccCCTTGTTCGTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCACTGACAGGGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCACGCTGTGTTCACATGCCCACTCTTTTTTGGAGTTggtacgtctcacctgttgtcttttctgtttctgcagccCATTTTCACCACA Alignment from CESAR ccCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCT-GCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCg ccCATTTTCACCACA tgagggaccagatctttctactaacctacttccttctctccttattatagccCCTTGTTCGTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCACTGACAGGGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCACGCTGTGTTCACATGCCCACTCTTTTTTGGAGTTggtacgtctcaccttgtgtccctgccccctttgcagccCATTTTCACCACA Alignment from Spaln_aa2Genome CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCT-GCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACA tgagggaccagatctttctactaacctacttccttctctccttattatagCCCCTTGTTCGTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCACTGACAGGGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAcGCTGTGTTCACATGCCCACTCTTTTTTGGAGTTGgtacgtctcacctgttgtcttttctgtttctgcagCCCATTTTCACCACA Alignment from Spaln_nt2Genome CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCT-GCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACA tgagggaccagatctttctactaacctacttccttctctccttattatagCCCCTTGTTCGTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCACTGACAGGGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCACGCTGTGTTCACATGCCCACTCTTTTTTGGAGTTGgtacgtctcacctgttgtcttttctgtttctgcagCCCATTTTCACCACA Alignment from Pairagon CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCC-TGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACA tgagggaccagatctttctactaacctacttccttctctccttattatagCCCCTTGTTCGTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCACTGACAGGGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCACGCTGTGTTCACATGCCCACTCTTTTTTGGAGTTGgtacgtctcacctgttgtcttttctgtttctgcagCCCATTTTCACCACA Alignment from Exonerate_protein2genome CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCT-GCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACA tgagggaccagatctttctactaacctacttccttctctccttattatagCCCCTTGTTCGTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCACTGACAGGGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCACGCTGTGTTCACATGCCCACTCTTTTTTGGAGTTGgtacgtctcacctgttgtcttttctgtttctgcagCCCATTTTCACCACA Alignment from Exonerate_coding2genome CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCT-GCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACA tgagggaccagatctttctactaacctacttccttctctccttattatagCCCCTTGTTCGTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCACTGACAGGGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCACGCTGTGTTCACATGCCCACTCTTTTTTGGAGTTGgtacgtctcacctgttgtcttttctgtttctgcagCCCATTTTCACCACA Alignment from GeneWise CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTG------------------------------TTCACCTGCCCACTCTTTTTTGGAGTC------GCCCATTTTCACCACA tgagggaccagatctttctactaacctacttccttctctccttattatagCCCCTTGTTCGTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCACTGACAGGGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCACGCTGTGTTCACATGCCCACTCTTTTTTGGAGTTGGTACGTCTCACCTGTTGTCTTTTCTGTTTCTGCAGCCCATTTTCACCACA #### Rce1_ID578_4 --> 0 - 1 Original Alignment ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTG-AAGGTTGTCCTGg attgtgataaaggtacttcaccttgtgtcctgttgatttccctcccctagATCCTTTTCCCAGGTCCACTGATGCAGCTTTCTATGGATTGCCCTTGTGACCTAACAGATGGACTGCAAGGTTGTTCTAggtaatgcccaaagactgtgaaaatggaatgcacaggcagccttgaacatg Alignment from CESAR ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTG-AAGGTTGTCCTGg attgtgataaaggtacttcaccttgtgtcctgttgatttccctcccctagATCCTTTTCCCAGGTCCACTGATGCAGCTTTCTATGGATTGCCCTTGTGACCTAACAGATGGACTGCAAGGTTGTTCTAggtaatgcccaaagactgtgaaaatggaatgcacaggcagccttgaacatg Alignment from Spaln_aa2Genome ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAG- attgtgataaaggtacttcaccttgtgtcctgttgatttccctcccctagATCCTTTTCCCAGGTCCACTGATGCAGCTTTCTATGGATTGCCCTTGTGACCTAACAGATGGACTGCAAGgttgttctaggtaatgcccaaagactgtgaaaatggaatgcacaggcagccttgaacatg Alignment from Spaln_nt2Genome ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTG-AAGGTTGTCCTGG attgtgataaaggtacttcaccttgtgtcctgttgatttccctcccctagATCCTTTTCCCAGGTCCACTGATGCAGCTTTCTATGGATTGCCCTTGTGACCTAACAGATGGACTGCAAGGTTGTTCTAGgtaatgcccaaagactgtgaaaatggaatgcacaggcagccttgaacatg Alignment from Pairagon ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTG-AAGGTTGTCCTGG attgtgataaaggtacttcaccttgtgtcctgttgatttccctcccctagATCCTTTTCCCAGGTCCACTGATGCAGCTTTCTATGGATTGCCCTTGTGACCTAACAGATGGACTGCAAGGTTGTTCTAGgtaatgcccaaagactgtgaaaatggaatgcacaggcagccttgaacatg Alignment from Exonerate_protein2genome ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTG-AAGGTTGTCCTGG attgtgataaaggtacttcaccttgtgtcctgttgatttccctcccctagATCCTTTTCCCAGGTCCACTGATGCAGCTTTCTATGGATTGCCCTTGTGACCTAACAGATGGACTGCAAGGTTGTTCTAGgtaatgcccaaagactgtgaaaatggaatgcacaggcagccttgaacatg Alignment from Exonerate_coding2genome ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTG-AAGGTTGTCCTGG attgtgataaaggtacttcaccttgtgtcctgttgatttccctcccctagATCCTTTTCCCAGGTCCACTGATGCAGCTTTCTATGGATTGCCCTTGTGACCTAACAGATGGACTGCAAGGTTGTTCTAGgtaatgcccaaagactgtgaaaatggaatgcacaggcagccttgaacatg Alignment from GeneWise ATCCTTTTCCTGGGTCCACTGATGCAGCTCTCTATGGATTGCCCTTGTGACCTGACAGATGGGCTGAAGG attgtgataaaggtacttcaccttgtgtcctgttgatttccctcccctagATCCTTTTCCCAGGTCCACTGATGCAGCTTTCTATGGATTGCCCTTGTGACCTAACAGATGGACTGCAAGgttgttctaggtaatgcccaaagactgtgaaaatggaatgcacaggcagccttgaacatg #### Rce1_ID579_3 --> 0 - 0 Original Alignment CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTC-CCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgttggcagaagcataaccaattctctcctccctgcactgcagCCTGGAACATCACTGCTCACCTTGATGGGTTTCAGACTGGAGGGCATTTTCCCCAGCAGCACTGCTGCCCCTGCTGCTAACTATGgtgggccatgcttgatgttttcgcaactctattgtaactagtgtaatgac Alignment from CESAR CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTC-CCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgttggcagaagcataaccaattctctcctccctgcactgcagCCTGGAACATCACTGCTCACCTTGATGGGTTTCAGACTGGAGGGCATTTTCCCCAGCAGCACTGCTGCCCCTGCTGCTAACTATGgtgggccatgcttgatgttttcgcaactctattgtaactagtgtaatgac Alignment from Spaln_aa2Genome CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCA-GCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgttggcagaagcataaccaattctctcctccctgcactgcagCCTGGAACATCACTGCTCACCTTGATGGGTTTCAGACTGGAGGGCATTTTCCCCaGCAGCACTGCTGCCCCTGCTGCTAACTATGgtgggccatgcttgatgttttcgcaactctattgtaactagtgtaatgac Alignment from Spaln_nt2Genome CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCC-AGCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgttggcagaagcataaccaattctctcctccctgcactgcagCCTGGAACATCACTGCTCACCTTGATGGGTTTCAGACTGGAGGGCATTTTCCCCAGCAGCACTGCTGCCCCTGCTGCTAACTATGgtgggccatgcttgatgttttcgcaactctattgtaactagtgtaatgac Alignment from Pairagon CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTT-CCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgttggcagaagcataaccaattctctcctccctgcactgcagCCTGGAACATCACTGCTCACCTTGATGGGTTTCAGACTGGAGGGCATTTTCCCCAGCAGCACTGCTGCCCCTGCTGCTAACTATGgtgggccatgcttgatgttttcgcaactctattgtaactagtgtaatgac Alignment from Exonerate_protein2genome CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTC-CCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgttggcagaagcataaccaattctctcctccctgcactgcagCCTGGAACATCACTGCTCACCTTGATGGGTTTCAGACTGGAGGGCATTTTCCCCAGCAGCACTGCTGCCCCTGCTGCTAACTATGgtgggccatgcttgatgttttcgcaactctattgtaactagtgtaatgac Alignment from Exonerate_coding2genome CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTC-CCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgttggcagaagcataaccaattctctcctccctgcactgcagCCTGGAACATCACTGCTCACCTTGATGGGTTTCAGACTGGAGGGCATTTTCCCCAGCAGCACTGCTGCCCCTGCTGCTAACTATGgtgggccatgcttgatgttttcgcaactctattgtaactagtgtaatgac Alignment from GeneWise CCAGGCACATCACTGCTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCA-GCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgttggcagaagcataaccaattctctcctccctgcactgcagCCTGGAACATCACTGCTCACCTTGATGGGTTTCAGACTGGAGGGCATTTTCCCCAGCAGCACTGCTGCCCCTGCTGCTAACTATGgtgggccatgcttgatgttttcgcaactctattgtaactagtgtaatgac #### Rcor2_ID2092_3 --> 2 - 0 Original Alignment ttGACAAGTACATTGCAATGGCCAAGGAG-AAGCATGGCTATAACATTGAGCAG gacttcaatagtagttggatggacacctccctttttatctcctttcttagttGACAAGTACATTGCAATGGCCAAGGAGCAAGCGTGGCTATAACATTGAGCAGgtttgtgagatcctgagaaatccttacggatggaagtggggctcaccagg Alignment from CESAR ttGACAAGTACATTGCAATGGCCAAGGAG-AAGCATGGCTATAACATTGAGCAG gacttcaatagtagttggatggacacctccctttttatctcctttcttagttGACAAGTACATTGCAATGGCCAAGGAGCAAGCGTGGCTATAACATTGAGCAGgtttgtgagatcctgagaaatccttacggatggaagtggggctcaccagg Alignment from Spaln_aa2Genome TTGACAAGTACATTGCAATGGCCAAGGAG-AAGCATGGCTATAACATTGAGCAG gacttcaatagtagttggatggacacctccctttttatctcctttcttagTTGACAAGTACATTGCAATGGCCAAGGAGcAAGCGTGGCTATAACATTGAGCAGgtttgtgagatcctgagaaatccttacggatggaagtggggctcaccagg Alignment from Spaln_nt2Genome TTGACAAGTACATTGCAATGGCCAAGGAG-AAGCATGGCTATAACATTGAGCAG gacttcaatagtagttggatggacacctccctttttatctcctttcttagTTGACAAGTACATTGCAATGGCCAAGGAGCAAGCGTGGCTATAACATTGAGCAGgtttgtgagatcctgagaaatccttacggatggaagtggggctcaccagg Alignment from Pairagon TTGACAAGTACATTGCAATGGCCAAGGAG-AAGCATGGCTATAACATTGAGCAG gacttcaatagtagttggatggacacctccctttttatctcctttcttagTTGACAAGTACATTGCAATGGCCAAGGAGCAAGCGTGGCTATAACATTGAGCAGgtttgtgagatcctgagaaatccttacggatggaagtggggctcaccagg Alignment from Exonerate_protein2genome TTGACAAGTACATTGCAATGGCCAAGGAG-AAGCATGGCTATAACATTGAGCAG gacttcaatagtagttggatggacacctccctttttatctcctttcttagTTGACAAGTACATTGCAATGGCCAAGGAGCAAGCGTGGCTATAACATTGAGCAGgtttgtgagatcctgagaaatccttacggatggaagtggggctcaccagg Alignment from Exonerate_coding2genome TTGACAAGTACATTGCAATGGCCAAGGAG-AAGCATGGCTATAACATTGAGCAG gacttcaatagtagttggatggacacctccctttttatctcctttcttagTTGACAAGTACATTGCAATGGCCAAGGAGCAAGCGTGGCTATAACATTGAGCAGgtttgtgagatcctgagaaatccttacggatggaagtggggctcaccagg Alignment from GeneWise gacttcaatagtagttggatggacacctccctttttatctcctttcttagttgacaagtacattgcaatggccaaggagcaagcgtggctataacattgagcaggtttgtgagatcctgagaaatccttacggatggaagtggggctcaccagg #### Rela_ID1127_4 --> 0 - 2 Original Alignment ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTG-GGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATag gaggcagattagaaaatgctggccactatttgtgcatggtctcactccagATTAATGGTTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTACGGGAAGGACTGTTGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATaggtgagttacctgtggactagaggtggtgtcagggggatgtaagagtatac Alignment from CESAR ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTG-GGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATag gaggcagattagaaaatgctggccactatttgtgcatggtctcactccagATTAATGGTTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTACGGGAAGGACTGTTGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATaggtgagttacctgtggactagaggtggtgtcagggggatgtaagagtatac Alignment from Spaln_aa2Genome ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTG-GGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG gaggcagattagaaaatgctggccactatttgtgcatggtctcactccagATTAATGGTTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTAcGGGAAGGACTGTTGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAGgtgagttacctgtggactagaggtggtgtcagggggatgtaagagtatac Alignment from Spaln_nt2Genome ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTG-GGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG gaggcagattagaaaatgctggccactatttgtgcatggtctcactccagATTAATGGTTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTACGGGAAGGACTGTTGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAGgtgagttacctgtggactagaggtggtgtcagggggatgtaagagtatac Alignment from Pairagon ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTG-GGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG gaggcagattagaaaatgctggccactatttgtgcatggtctcactccagATTAATGGTTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTACGGGAAGGACTGTTGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAGgtgagttacctgtggactagaggtggtgtcagggggatgtaagagtatac Alignment from Exonerate_protein2genome ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTG-GGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG gaggcagattagaaaatgctggccactatttgtgcatggtctcactccagATTAATGGTTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTACGGGAAGGACTGTTGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAGgtgagttacctgtggactagaggtggtgtcagggggatgtaagagtatac Alignment from Exonerate_coding2genome ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTTGTG-GGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG gaggcagattagaaaatgctggccactatttgtgcatggtctcactccagATTAATGGTTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTACGGGAAGGACTGTTGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAGgtgagttacctgtggactagaggtggtgtcagggggatgtaagagtatac Alignment from GeneWise ATCAATGGCTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGGCCTCATCCACATGAACTT-GTGGGGAAGGACTGCCGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAG gaggcagattagaaaatgctggccactatttgtgcatggtctcactccagATTAATGGTTACACAGGACCAGGAACAGTTCGAATCTCCCTGGTCACCAAGGATCCACCTCACCGCCCTCATCCACATGAACTTGTACGGGAAGGACTGTTGGGATGGCTACTATGAGGCTGACCTCTGCCCAGACCGCAGTATCCATAGgtgagttacctgtggactagaggtggtgtcagggggatgtaagagtatac #### Rela_ID1128_5 --> 1 - 1 Original Alignment cTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATT-AGCCAGCGAATCCAGACCAACAATAACCCCTTTCACg tccaagaaggggttttgccggtgacacatcagcttgcttcctttcctcagcTTCCAGAACCTGGGCATACAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTCAGCCAGCGAATTCAGACCAACAATAACCCATTTCATggtgagtgaaaggggggaaagtcatttcatcttaatatgaaacatgtatat Alignment from CESAR cTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATT-AGCCAGCGAATCCAGACCAACAATAACCCCTTTCACg tccaagaaggggttttgccggtgacacatcagcttgcttcctttcctcagcTTCCAGAACCTGGGCATACAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTCAGCCAGCGAATTCAGACCAACAATAACCCATTTCATggtgagtgaaaggggggaaagtcatttcatcttaatatgaaacatgtatat Alignment from Spaln_aa2Genome CTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATT-AGCCAGCGAATCCAGACCAACAATAACCCCTTTCACG tccaagaaggggttttgccggtgacacatcagcttgcttcctttcctcagCTTCCAGAACCTGGGCATACAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTcAGCCAGCGAATTCAGACCAACAATAACCCATTTCATGgtgagtgaaaggggggaaagtcatttcatcttaatatgaaacatgtatat Alignment from Spaln_nt2Genome CTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATT-AGCCAGCGAATCCAGACCAACAATAACCCCTTTCACG tccaagaaggggttttgccggtgacacatcagcttgcttcctttcctcagCTTCCAGAACCTGGGCATACAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTCAGCCAGCGAATTCAGACCAACAATAACCCATTTCATGgtgagtgaaaggggggaaagtcatttcatcttaatatgaaacatgtatat Alignment from Pairagon CTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATT-AGCCAGCGAATCCAGACCAACAATAACCCCTTTCACG tccaagaaggggttttgccggtgacacatcagcttgcttcctttcctcagCTTCCAGAACCTGGGCATACAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTCAGCCAGCGAATTCAGACCAACAATAACCCATTTCATGgtgagtgaaaggggggaaagtcatttcatcttaatatgaaacatgtatat Alignment from Exonerate_protein2genome CTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATT-AGCCAGCGAATCCAGACCAACAATAACCCCTTTCACG tccaagaaggggttttgccggtgacacatcagcttgcttcctttcctcagCTTCCAGAACCTGGGCATACAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTCAGCCAGCGAATTCAGACCAACAATAACCCATTTCATGgtgagtgaaaggggggaaagtcatttcatcttaatatgaaacatgtatat Alignment from Exonerate_coding2genome CTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATT-AGCCAGCGAATCCAGACCAACAATAACCCCTTTCACG tccaagaaggggttttgccggtgacacatcagcttgcttcctttcctcagCTTCCAGAACCTGGGCATACAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTCAGCCAGCGAATTCAGACCAACAATAACCCATTTCATGgtgagtgaaaggggggaaagtcatttcatcttaatatgaaacatgtatat Alignment from GeneWise CTTCCAGAACCTGGGGATCCAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATT-AGCCAGCGAATCCAGACCAACAATAACCCCTTTCACG tccaagaaggggttttgccggtgacacatcagcttgcttcctttcctcagCTTCCAGAACCTGGGCATACAGTGTGTGAAGAAGCGAGACCTGGAGCAAGCCATTCAGCCAGCGAATTCAGACCAACAATAACCCATTTCATGgtgagtgaaaggggggaaagtcatttcatcttaatatgaaacatgtatat #### Rela_ID1130_7 --> 2 - 1 Original Alignment ggGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGG-GATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAg tggtgggtgctagagctcctaaaggtacaccgtgggctcctcgtttctagggGCCCCCAACACTGCTGAGCTTAAAATCTGCAGAGTAAACCGGAACTCTGGGAGCTGTCTTGGTGGGCGATGAGATATTCCTACTGTGTGACAGGGTACAGAAGggtgggcagtgaactacacatggagaggggagggggaaatctgggtggagg Alignment from CESAR ggGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGG-GATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAg tggtgggtgctagagctcctaaaggtacaccgtgggctcctcgtttctagggGCCCCCAACACTGCTGAGCTTAAAATCTGCAGAGTAAACCGGAACTCTGGGAGCTGTCTTGGTGGGCGATGAGATATTCCTACTGTGTGACAGGGTACAGAAGggtgggcagtgaactacacatggagaggggagggggaaatctgggtggagg Alignment from Spaln_aa2Genome GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGG-GATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG tggtgggtgctagagctcctaaaggtacaccgtgggctcctcgtttctagGGGCCCCCAACACTGCTGAGCTTAAAATCTGCAGAGTAAACCGGAACTCTGGGAGCTGTCTTGGTGGGcGATGAGATATTCCTACTGTGTGACAGGGTACAGAAGGgtgggcagtgaactacacatggagaggggagggggaaatctgggtggagg Alignment from Spaln_nt2Genome GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGG-GATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG tggtgggtgctagagctcctaaaggtacaccgtgggctcctcgtttctagGGGCCCCCAACACTGCTGAGCTTAAAATCTGCAGAGTAAACCGGAACTCTGGGAGCTGTCTTGGTGGGCGATGAGATATTCCTACTGTGTGACAGGGTACAGAAGGgtgggcagtgaactacacatggagaggggagggggaaatctgggtggagg Alignment from Pairagon GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGG-GATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG tggtgggtgctagagctcctaaaggtacaccgtgggctcctcgtttctagGGGCCCCCAACACTGCTGAGCTTAAAATCTGCAGAGTAAACCGGAACTCTGGGAGCTGTCTTGGTGGGCGATGAGATATTCCTACTGTGTGACAGGGTACAGAAGGgtgggcagtgaactacacatggagaggggagggggaaatctgggtggagg Alignment from Exonerate_protein2genome GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGT-GGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG tggtgggtgctagagctcctaaaggtacaccgtgggctcctcgtttctagGGGCCCCCAACACTGCTGAGCTTAAAATCTGCAGAGTAAACCGGAACTCTGGGAGCTGTCTTGGTGGGCGATGAGATATTCCTACTGTGTGACAGGGTACAGAAGGgtgggcagtgaactacacatggagaggggagggggaaatctgggtggagg Alignment from Exonerate_coding2genome GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGT-GGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG tggtgggtgctagagctcctaaaggtacaccgtgggctcctcgtttctagGGGCCCCCAACACTGCTGAGCTTAAAATCTGCAGAGTAAACCGGAACTCTGGGAGCTGTCTTGGTGGGCGATGAGATATTCCTACTGTGTGACAGGGTACAGAAGGgtgggcagtgaactacacatggagaggggagggggaaatctgggtggagg Alignment from GeneWise GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGT-GGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG tggtgggtgctagagctcctaaaggtacaccgtgggctcctcgtttctagGGGCCCCCAACACTGCTGAGCTTAAAATCTGCAGAGTAAACCGGAACTCTGGGAGCTGTCTTGGTGGGCGATGAGATATTCCTACTGTGTGACAGGGTACAGAAGGgtgggcagtgaactacacatggagaggggagggggaaatctgggtggagg #### Rin1_ID808_3 --> 0 - 1 Original Alignment ACCTTCCTGGTGCGGAAATCTAACACT-CGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCg acatggctggacatggagaaccagagcattgtatctatcttttcttccagACCTTCCTGGTGCGAAAATCTAACACCCCGCCAGTGCCAGGCTCTGTGTGTGCGGTTACCGGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCggtgcgtagggtagctaagggataggtgcacaaagacaagcacatgcagga Alignment from CESAR ACCTTCCTGGTGCGGAAATCTAACACT-CGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCg acatggctggacatggagaaccagagcattgtatctatcttttcttccagACCTTCCTGGTGCGAAAATCTAACACCCCGCCAGTGCCAGGCTCTGTGTGTGCGGTTACCGGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCggtgcgtagggtagctaagggataggtgcacaaagacaagcacatgcagga Alignment from Spaln_aa2Genome ACCTTCCTGGTGCGGAAATCTAACACT-CGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG acatggctggacatggagaaccagagcattgtatctatcttttcttccagACCTTCCTGGTGCGAAAATCTAACACCcCGCCAGTGCCAGGCTCTGTGTGTGCGGTTACCGGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCGgtgcgtagggtagctaagggataggtgcacaaagacaagcacatgcagga Alignment from Spaln_nt2Genome ACCTTCCTGGTGCGGAAATCTAACACTC-GCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG acatggctggacatggagaaccagagcattgtatctatcttttcttccagACCTTCCTGGTGCGAAAATCTAACACCCCGCCAGTGCCAGGCTCTGTGTGTGCGGTTACCGGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCGgtgcgtagggtagctaagggataggtgcacaaagacaagcacatgcagga Alignment from Pairagon ACCTTCCTGGTGCGGAAATCTAACA-CTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG acatggctggacatggagaaccagagcattgtatctatcttttcttccagACCTTCCTGGTGCGAAAATCTAACACCCCGCCAGTGCCAGGCTCTGTGTGTGCGGTTACCGGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCGgtgcgtagggtagctaagggataggtgcacaaagacaagcacatgcagga Alignment from Exonerate_protein2genome ACCTTCCTGGTGCGGAAATCTAACACT-CGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG acatggctggacatggagaaccagagcattgtatctatcttttcttccagACCTTCCTGGTGCGAAAATCTAACACCCCGCCAGTGCCAGGCTCTGTGTGTGCGGTTACCGGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCGgtgcgtagggtagctaagggataggtgcacaaagacaagcacatgcagga Alignment from Exonerate_coding2genome ACCTTCCTGGTGCGGAAATCTAACACT-CGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG acatggctggacatggagaaccagagcattgtatctatcttttcttccagACCTTCCTGGTGCGAAAATCTAACACCCCGCCAGTGCCAGGCTCTGTGTGTGCGGTTACCGGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCGgtgcgtagggtagctaagggataggtgcacaaagacaagcacatgcagga Alignment from GeneWise ACCTTCCTGGTGCGGAAATCTAAC-ACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG acatggctggacatggagaaccagagcattgtatctatcttttcttccagACCTTCCTGGTGCGAAAATCTAACACCCCGCCAGTGCCAGGCTCTGTGTGTGCGGTTACCGGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCGgtgcgtagggtagctaagggataggtgcacaaagacaagcacatgcagga #### Rnaseh2c_ID1104_3 --> 0 - 0 Original Alignment GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGG-GGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG ttttgggtgagggcgactgctgtaccaaaccctctccccctcttctctagGACCGCCTTATCGGGGCCACCGGAAGCTTCAGCCATTTCACATTGTGGCGGTCTTGAAACAGTCCCAGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAgtacctagacttaggagcccctttttacctctgacagctgacaattcctc Alignment from CESAR GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGG-GGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG ttttgggtgagggcgactgctgtaccaaaccctctccccctcttctctagGACCGCCTTATCGGGGCCACCGGAAGCTTCAGCCATTTCACATTGTGGCGGTCTTGAAACAGTCCCAGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAgtacctagacttaggagcccctttttacctctgacagctgacaattcctc Alignment from Spaln_aa2Genome GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGG-GGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG ttttgggtgagggcgactgctgtaccaaaccctctccccctcttctctagGACCGCCTTATCGGGGCCACCGGAAGCTTCAGCCATTTCACATTGTGGcGGTCTTGAAACAGTCCCAGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAgtacctagacttaggagcccctttttacctctgacagctgacaattcctc Alignment from Spaln_nt2Genome ACTTCG -ACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGG-GGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG TTTTGGgtgagggcgactgctgtaccaaaccctctccccctcttctctagGACCGCCTTATCGGGGCCACCGGAAGCTTCAGCCATTTCACATTGTGGCGGTCTTGAAACAGTCCCAGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAgtacctagacttaggagcccctttttacctctgacagctgacaattcctc Alignment from Pairagon GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGG-GGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG ttttgggtgagggcgactgctgtaccaaaccctctccccctcttctctagGACCGCCTTATCGGGGCCACCGGAAGCTTCAGCCATTTCACATTGTGGCGGTCTTGAAACAGTCCCAGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAgtacctagacttaggagcccctttttacctctgacagctgacaattcctc Alignment from Exonerate_protein2genome ttttgggtgagggcgactgctgtaccaaaccctctccccctcttctctaggaccgccttatcggggccaccggaagcttcagccatttcacattgtggcggtcttgaaacagtcccaggtccagatgccaaagtgcatagggccctaggatggcccaccctagcagcagcagtacctagacttaggagcccctttttacctctgacagctgacaattcctc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGG-GGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCGATT ttttgggtgagggcgactgctgtaccaaaccctctccccctcttctctagGACCGCCTTATCGGGGCCACCGGAAGCTTCAGCCATTTCACATTGTGGCGGTCTTGAAACAGTCCCAGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAGTAcctagacttaggagcccctttttacctctgacagctgacaattcctc #### Rom1_ID2497_2 --> 1 - 0 Original Alignment cCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTA-TCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tcgatgctttcacactccacctcatgatatctctttattcttaattcaagtCGGATCCCAAGCAATGTAGAAGGCTTATATCTGATTGATGGAGTCCCCTTCTCCTGCTGTAATCCCCACTCACCT------TGTCTGCAAAGCCAACTCTCAGACCCCTATGCCCATCCACTTCTT---CCTCAGCAGCCCAACCTAAACCTCTGGGCCCAAGGATGCCATAAAGTGCTGCTGGAACACCTGCAGGGTTTACTCCGGAACGTTGGGAAGTATTCTGGTGATAACTTTATTGCTGCAGgtaagtcgttaaggtccctaactcccacattcacttttgtgaccttaaaa Alignment from CESAR cCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTA-TCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tcgatgctttcacactccacctcatgatatctctttattcttaattcaagtCGGATCCCAAGCAATGTAGAAGGCTTATATCTGATTGATGGAGTCCCCTTCTCCTGCTGTAATCCCCACTCA------CCTTGTCTGCAAAGCCAACTCTCAGACCCCTATGCCCATCCACTTCTT---CCTCAGCAGCCCAACCTAAACCTCTGGGCCCAAGGATGCCATAAAGTGCTGCTGGAACACCTGCAGGGTTTACTCCGGAACGTTGGGAAGTATTCTGGTGATAACTTTATTGCTGCAGgtaagtcgttaaggtccctaactcccacattcacttttgtgaccttaaaa Alignment from Spaln_aa2Genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTA-TCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tcgatgctttcacactccacctcatgatatctctttattcttaattcaagTCGGATCCCAAGCAATGTAGAAGGCTTATATCTGATTGATGGAGTCCCCTTCTCCTGCTGTAATCCCCACTCA------CCTTGTCTGCAAAGCCAACTCTCAGACCCCTATGCCCATCCACTTCTT---CCTCAGCAGCCCAACCTAAACCTCTGGGCCCAAGGATGCCATAAAGTGCTGCTGGAACACCTGCAGGGTTTAcTCCGGAACGTTGGGAAGTATTCTGGTGATAACTTTATTGCTGCAGgtaagtcgttaaggtccctaactcccacattcacttttgtgaccttaaaa Alignment from Spaln_nt2Genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTA-TCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tcgatgctttcacactccacctcatgatatctctttattcttaattcaagTCGGATCCCAAGCAATGTAGAAGGCTTATATCTGATTGATGGAGTCCCCTTCTCCTGCTGTAATCCCCACTCA------CCTTGTCTGCAAAGCCAACTCTCAGACCCCTATGCCCATCCACTTCT---TCCTCAGCAGCCCAACCTAAACCTCTGGGCCCAAGGATGCCATAAAGTGCTGCTGGAACACCTGCAGGGTTTACTCCGGAACGTTGGGAAGTATTCTGGTGATAACTTTATTGCTGCAGgtaagtcgttaaggtccctaactcccacattcacttttgtgaccttaaaa Alignment from Pairagon CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTA-TCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tcgatgctttcacactccacctcatgatatctctttattcttaattcaagTCGGATCCCAAGCAATGTAGAAGGCTTATATCTGATTGATGGAGTCCCCTTCTCCTGCTGTAATCCCCACTCA------CCTTGTCTGCAAAGCCAACTCTCAGACCCCTATGCCCATCCACTTCT---TCCTCAGCAGCCCAACCTAAACCTCTGGGCCCAAGGATGCCATAAAGTGCTGCTGGAACACCTGCAGGGTTTACTCCGGAACGTTGGGAAGTATTCTGGTGATAACTTTATTGCTGCAGgtaagtcgttaaggtccctaactcccacattcacttttgtgaccttaaaa Alignment from Exonerate_protein2genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTA-TCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tcgatgctttcacactccacctcatgatatctctttattcttaattcaagTCGGATCCCAAGCAATGTAGAAGGCTTATATCTGATTGATGGAGTCCCCTTCTCCTGCTGTAATCCCCACTCA------CCTTGTCTGCAAAGCCAACTCTCAGACCCCTATGCCCATCCACTTCTT---CCTCAGCAGCCCAACCTAAACCTCTGGGCCCAAGGATGCCATAAAGTGCTGCTGGAACACCTGCAGGGTTTACTCCGGAACGTTGGGAAGTATTCTGGTGATAACTTTATTGCTGCAGgtaagtcgttaaggtccctaactcccacattcacttttgtgaccttaaaa Alignment from Exonerate_coding2genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTA-TCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tcgatgctttcacactccacctcatgatatctctttattcttaattcaagTCGGATCCCAAGCAATGTAGAAGGCTTATATCTGATTGATGGAGTCCCCTTCTCCTGCTGTAATCCCCACTCA------CCTTGTCTGCAAAGCCAACTCTCAGACCCCTATGCCCATCCACTTCTT---CCTCAGCAGCCCAACCTAAACCTCTGGGCCCAAGGATGCCATAAAGTGCTGCTGGAACACCTGCAGGGTTTACTCCGGAACGTTGGGAAGTATTCTGGTGATAACTTTATTGCTGCAGgtaagtcgttaaggtccctaactcccacattcacttttgtgaccttaaaa Alignment from GeneWise CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTA-TCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tcgatgctttcacactccacctcatgatatctctttattcttaattcaagTCGGATCCCAAGCAATGTAGAAGGCTTATATCTGATTGATGGAGTCCCCTTCTCCTGCTGTAATCCCCACTCACCT------TGTCTGCAAAGCCAACTCTCAGACCCCTATGCCCATCCACTTCTT---CCTCAGCAGCCCAACCTAAACCTCTGGGCCCAAGGATGCCATAAAGTGCTGCTGGAACACCTGCAGGGTTTACTCCGGAACGTTGGGAAGTATTCTGGTGATAACTTTATTGCTGCAGgtaagtcgttaaggtccctaactcccacattcacttttgtgaccttaaaa #### Rps6kb2_ID368_14 --> 0 - 2 Original Alignment GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAG-GGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCag cctagggattggcaataccagcattactttactgtttctgggcctgccagGGTTTTACATATGTGGCACCTTCCGTCCTGGATAGCATCAAGGAGCGGTTTCTCATTCCAGCCTAAGCTGCGCTCTCCAAGATGCCTTAACAGCAGTCCCCGCACTCCCATCaggtacatggcagggcagatagatgtttagtcaagcagtcccaaacatggat Alignment from CESAR GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAG-GGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCag cctagggattggcaataccagcattactttactgtttctgggcctgccagGGTTTTACATATGTGGCACCTTCCGTCCTGGATAGCATCAAGGAGCGGTTTCTCATTCCAGCCTAAGCTGCGCTCTCCAAGATGCCTTAACAGCAGTCCCCGCACTCCCATCaggtacatggcagggcagatagatgtttagtcaagcagtcccaaacatggat Alignment from Spaln_aa2Genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAG-GGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG cctagggattggcaataccagcattactttactgtttctgggcctgccagGGTTTTACATATGTGGCACCTTCCGTCCTGGATAGCATCAAGGAGcGGTTTCTCATTCCAGCCTAAGCTGCGCTCTCCAAGATGCCTTAACAGCAGTCCCCGCACTCCCATCAGgtacatggcagggcagatagatgtttagtcaagcagtcccaaacatggat Alignment from Spaln_nt2Genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAG-GGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG cctagggattggcaataccagcattactttactgtttctgggcctgccagGGTTTTACATATGTGGCACCTTCCGTCCTGGATAGCATCAAGGAGCGGTTTCTCATTCCAGCCTAAGCTGCGCTCTCCAAGATGCCTTAACAGCAGTCCCCGCACTCCCATCAGgtacatggcagggcagatagatgtttagtcaagcagtcccaaacatggat Alignment from Pairagon GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAG-GGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG cctagggattggcaataccagcattactttactgtttctgggcctgccagGGTTTTACATATGTGGCACCTTCCGTCCTGGATAGCATCAAGGAGCGGTTTCTCATTCCAGCCTAAGCTGCGCTCTCCAAGATGCCTTAACAGCAGTCCCCGCACTCCCATCAGgtacatggcagggcagatagatgtttagtcaagcagtcccaaacatggat Alignment from Exonerate_protein2genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAG-GGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG cctagggattggcaataccagcattactttactgtttctgggcctgccagGGTTTTACATATGTGGCACCTTCCGTCCTGGATAGCATCAAGGAGCGGTTTCTCATTCCAGCCTAAGCTGCGCTCTCCAAGATGCCTTAACAGCAGTCCCCGCACTCCCATCAGgtacatggcagggcagatagatgtttagtcaagcagtcccaaacatggat Alignment from Exonerate_coding2genome GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAAGAG-GGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG cctagggattggcaataccagcattactttactgtttctgggcctgccagGGTTTTACATATGTGGCACCTTCCGTCCTGGATAGCATCAAGGAGCGGTTTCTCATTCCAGCCTAAGCTGCGCTCTCCAAGATGCCTTAACAGCAGTCCCCGCACTCCCATCAGgtacatggcagggcagatagatgtttagtcaagcagtcccaaacatggat Alignment from GeneWise GGCTTTACATATGTGGCACCTTCTGTCCTGGACAGCATCAAA-GAGGGCTTCTCCTTCCAGCCCAAGCTGCGTTCTCCCAGACGCCTTAACAGCAGTCCCCGCACCCCCATCAG cctagggattggcaataccagcattactttactgtttctgggcctgccagGGTTTTACATATGTGGCACCTTCCGTCCTGGATAGCATCAAGGAGCGGTTTCTCATTCCAGCCTAAGCTGCGCTCTCCAAGATGCCTTAACAGCAGTCCCCGCACTCCCATCAGgtacatggcagggcagatagatgtttagtcaagcagtcccaaacatggat #### Rps6kb2_ID369_13 --> 0 - 0 Original Alignment CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAG-AGTGCCAACCAAGCCTTCCTG ctctttcagtaccctgaattctgtaattcagctgcctgttcctcctgcagCAATCTGAGGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAAACACCGGTGGATAGCCCAGATGACACAGCCCTAACTGAGCAGTGCCAACCAAGCCTTCCTGgtgagtgcctggggttatggggaaaaggattgctcctagggattggcaat Alignment from CESAR CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAG-AGTGCCAACCAAGCCTTCCTG ctctttcagtaccctgaattctgtaattcagctgcctgttcctcctgcagCAATCTGAGGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAAACACCGGTGGATAGCCCAGATGACACAGCCCTAACTGAGCAGTGCCAACCAAGCCTTCCTGgtgagtgcctggggttatggggaaaaggattgctcctagggattggcaat Alignment from Spaln_aa2Genome CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAG-AGTGCCAACCAAGCCTTCCTG ctctttcagtaccctgaattctgtaattcagctgcctgttcctcctgcagCAATCTGAGGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAAACACCGGTGGATAGCCCAGATGACACAGCCCTAACTGAGcAGTGCCAACCAAGCCTTCCTGgtgagtgcctggggttatggggaaaaggattgctcctagggattggcaat Alignment from Spaln_nt2Genome CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAG-AGTGCCAACCAAGCCTTCCTG ctctttcagtaccctgaattctgtaattcagctgcctgttcctcctgcagCAATCTGAGGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAAACACCGGTGGATAGCCCAGATGACACAGCCCTAACTGAGCAGTGCCAACCAAGCCTTCCTGgtgagtgcctggggttatggggaaaaggattgctcctagggattggcaat Alignment from Pairagon CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAG-AGTGCCAACCAAGCCTTCCTG ctctttcagtaccctgaattctgtaattcagctgcctgttcctcctgcagCAATCTGAGGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAAACACCGGTGGATAGCCCAGATGACACAGCCCTAACTGAGCAGTGCCAACCAAGCCTTCCTGgtgagtgcctggggttatggggaaaaggattgctcctagggattggcaat Alignment from Exonerate_protein2genome CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAG-AGTGCCAACCAAGCCTTCCTG ctctttcagtaccctgaattctgtaattcagctgcctgttcctcctgcagCAATCTGAGGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAAACACCGGTGGATAGCCCAGATGACACAGCCCTAACTGAGCAGTGCCAACCAAGCCTTCCTGgtgagtgcctggggttatggggaaaaggattgctcctagggattggcaat Alignment from Exonerate_coding2genome CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAG-AGTGCCAACCAAGCCTTCCTG ctctttcagtaccctgaattctgtaattcagctgcctgttcctcctgcagCAATCTGAGGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAAACACCGGTGGATAGCCCAGATGACACAGCCCTAACTGAGCAGTGCCAACCAAGCCTTCCTGgtgagtgcctggggttatggggaaaaggattgctcctagggattggcaat Alignment from GeneWise CAATCAGAAGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAG-AGTGCCAACCAAGCCTTCCTG ctctttcagtaccctgaattctgtaattcagctgcctgttcctcctgcagCAATCTGAGGAGGATGTGAGCCAGTTTGATGCACGATTCACACGGCAAACACCGGTGGATAGCCCAGATGACACAGCCCTAACTGAGCAGTGCCAACCAAGCCTTCCTGgtgagtgcctggggttatggggaaaaggattgctcctagggattggcaat #### Rps6kb2_ID371_11 --> 0 - 0 Original Alignment TTTCTGAAGCGGAACCCC-ACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG tgcctggcccccatttgttttctttcaaccatcttttttgtctgtttcagTTACTGAAGCGAAACCCCCACTCAGCGAATTGGGGGTGGTTTGGGAGATGCTGCTGATGTCCAGgtagagatggatatgtgataatgtacttaagctggaggagaacatggata Alignment from CESAR TTTCTGAAGCGGAAC-CCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG tgcctggcccccatttgttttctttcaaccatcttttttgtctgtttcagTTACTGAAGCGAAACCCCCACTCAGCGAATTGGGGGTGGTTTGGGAGATGCTGCTGATGTCCAGgtagagatggatatgtgataatgtacttaagctggaggagaacatggata Alignment from Spaln_aa2Genome TTTCTGAAGCGGAAC-CCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG tgcctggcccccatttgttttctttcaaccatcttttttgtctgtttcagTTACTGAAGCGAAACcCCCACTCAGCGAATTGGGGGTGGTTTGGGAGATGCTGCTGATGTCCAGgtagagatggatatgtgataatgtacttaagctggaggagaacatggata Alignment from Spaln_nt2Genome TTTCTGAAGCGGAACCCC-ACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG tgcctggcccccatttgttttctttcaaccatcttttttgtctgtttcagTTACTGAAGCGAAACCCCCACTCAGCGAATTGGGGGTGGTTTGGGAGATGCTGCTGATGTCCAGgtagagatggatatgtgataatgtacttaagctggaggagaacatggata Alignment from Pairagon TTTCTGAAGCGGAA-CCCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG tgcctggcccccatttgttttctttcaaccatcttttttgtctgtttcagTTACTGAAGCGAAACCCCCACTCAGCGAATTGGGGGTGGTTTGGGAGATGCTGCTGATGTCCAGgtagagatggatatgtgataatgtacttaagctggaggagaacatggata Alignment from Exonerate_protein2genome TTTCTGAAGCGGAAC-CCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG tgcctggcccccatttgttttctttcaaccatcttttttgtctgtttcagTTACTGAAGCGAAACCCCCACTCAGCGAATTGGGGGTGGTTTGGGAGATGCTGCTGATGTCCAGgtagagatggatatgtgataatgtacttaagctggaggagaacatggata Alignment from Exonerate_coding2genome TTTCTGAAGCGGAAC-CCCACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG tgcctggcccccatttgttttctttcaaccatcttttttgtctgtttcagTTACTGAAGCGAAACCCCCACTCAGCGAATTGGGGGTGGTTTGGGAGATGCTGCTGATGTCCAGgtagagatggatatgtgataatgtacttaagctggaggagaacatggata Alignment from GeneWise TTTCTGAAGCGGAACCCC-ACTCAGCGAATTGGGGGTGGCCTGGGAGATGCTGCTGATGTCCAG tgcctggcccccatttgttttctttcaaccatcttttttgtctgtttcagTTACTGAAGCGAAACCCCCACTCAGCGAATTGGGGGTGGTTTGGGAGATGCTGCTGATGTCCAGgtagagatggatatgtgataatgtacttaagctggaggagaacatggata #### Rps6kb2_ID375_7 --> 1 - 1 Original Alignment cTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCT-GAGAACATCATGCTCAGCAGCCAGg ggtactgggccctgcctacaccccaacctgtcttttctttatttcatcagcTTCTACCTGGCAGAGATCACACTGGCGCTAGGCCATCTCCATTTCCATGGCATCATCTACCGGGACCGCAAGCCTCGAAAACATCATGCTCACCAGCCAGggtaagtagaatgtgtgcatgtatgggtgttaagcctttggtcttgccggt Alignment from CESAR cTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCT-GAGAACATCATGCTCAGCAGCCAGg ggtactgggccctgcctacaccccaacctgtcttttctttatttcatcagcTTCTACCTGGCAGAGATCACACTGGCGCTAGGCCATCTCCATTTCCATGGCATCATCTACCGGGACCGCAAGCCTCGAAAACATCATGCTCACCAGCCAGggtaagtagaatgtgtgcatgtatgggtgttaagcctttggtcttgccggt Alignment from Spaln_aa2Genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCT-GAGAACATCATGCTCAGCAGCCAGG ggtactgggccctgcctacaccccaacctgtcttttctttatttcatcagCTTCTACCTGGCAGAGATCACACTGGCGCTAGGCCATCTCCATTTCCATGGCATCATCTACCGGGACCGCAAGCCTcGAAAACATCATGCTCACCAGCCAGGgtaagtagaatgtgtgcatgtatgggtgttaagcctttggtcttgccggt Alignment from Spaln_nt2Genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCT-GAGAACATCATGCTCAGCAGCCAGG ggtactgggccctgcctacaccccaacctgtcttttctttatttcatcagCTTCTACCTGGCAGAGATCACACTGGCGCTAGGCCATCTCCATTTCCATGGCATCATCTACCGGGACCGCAAGCCTCGAAAACATCATGCTCACCAGCCAGGgtaagtagaatgtgtgcatgtatgggtgttaagcctttggtcttgccggt Alignment from Pairagon CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCT-GAGAACATCATGCTCAGCAGCCAGG ggtactgggccctgcctacaccccaacctgtcttttctttatttcatcagCTTCTACCTGGCAGAGATCACACTGGCGCTAGGCCATCTCCATTTCCATGGCATCATCTACCGGGACCGCAAGCCTCGAAAACATCATGCTCACCAGCCAGGgtaagtagaatgtgtgcatgtatgggtgttaagcctttggtcttgccggt Alignment from Exonerate_protein2genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCT-GAGAACATCATGCTCAGCAGCCAGG ggtactgggccctgcctacaccccaacctgtcttttctttatttcatcagCTTCTACCTGGCAGAGATCACACTGGCGCTAGGCCATCTCCATTTCCATGGCATCATCTACCGGGACCGCAAGCCTCGAAAACATCATGCTCACCAGCCAGGgtaagtagaatgtgtgcatgtatgggtgttaagcctttggtcttgccggt Alignment from Exonerate_coding2genome CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCT-GAGAACATCATGCTCAGCAGCCAGG ggtactgggccctgcctacaccccaacctgtcttttctttatttcatcagCTTCTACCTGGCAGAGATCACACTGGCGCTAGGCCATCTCCATTTCCATGGCATCATCTACCGGGACCGCAAGCCTCGAAAACATCATGCTCACCAGCCAGGgtaagtagaatgtgtgcatgtatgggtgttaagcctttggtcttgccggt Alignment from GeneWise CTTCTACCTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCT-GAGAACATCATGCTCAGCAGCCAGG ggtactgggccctgcctacaccccaacctgtcttttctttatttcatcagCTTCTACCTGGCAGAGATCACACTGGCGCTAGGCCATCTCCATTTCCATGGCATCATCTACCGGGACCGCAAGCCTCGAAAACATCATGCTCACCAGCCAGGgtaagtagaatgtgtgcatgtatgggtgttaagcctttggtcttgccggt #### Rps6kb2_ID379_3 --> 1 - 0 Original Alignment gACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCAC-TGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG ggccttggagtacattagaacttttccctgcttccctttctctgccttaggACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGTGTGAACCTTGGTCCTGAACGTATTGGGCCCCACCTGCTTTGAGTTACTTAGTGTCCTGGTCAAGGGGGGCTATGGCAAGgtaagtatatcctgctccccctggcagcttcagccctagtgtgattaact Alignment from CESAR gACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCAC-TGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG ggccttggagtacattagaacttttccctgcttccctttctctgccttaggACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGTGTGAACCTTGGTCCTGAACGTATTGGGCCCCACCTGCTTTGAGTTACTTAGTGTCCTGGTCAAGGGGGGCTATGGCAAGgtaagtatatcctgctccccctggcagcttcagccctagtgtgattaact Alignment from Spaln_aa2Genome GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCAC-TGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG ggccttggagtacattagaacttttccctgcttccctttctctgccttagGACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGTGTGAACCTTGGTCCTGAACGTATTGGGCCCCACcTGCTTTGAGTTACTTAGTGTCCTGGTCAAGGGGGGCTATGGCAAGgtaagtatatcctgctccccctggcagcttcagccctagtgtgattaact Alignment from Spaln_nt2Genome GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCA-CTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG ggccttggagtacattagaacttttccctgcttccctttctctgccttagGACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGTGTGAACCTTGGTCCTGAACGTATTGGGCCCCACCTGCTTTGAGTTACTTAGTGTCCTGGTCAAGGGGGGCTATGGCAAGgtaagtatatcctgctccccctggcagcttcagccctagtgtgattaact Alignment from Pairagon GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCA-CTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG ggccttggagtacattagaacttttccctgcttccctttctctgccttagGACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGTGTGAACCTTGGTCCTGAACGTATTGGGCCCCACCTGCTTTGAGTTACTTAGTGTCCTGGTCAAGGGGGGCTATGGCAAGgtaagtatatcctgctccccctggcagcttcagccctagtgtgattaact Alignment from Exonerate_protein2genome GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCAC-TGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG ggccttggagtacattagaacttttccctgcttccctttctctgccttagGACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGTGTGAACCTTGGTCCTGAACGTATTGGGCCCCACCTGCTTTGAGTTACTTAGTGTCCTGGTCAAGGGGGGCTATGGCAAGgtaagtatatcctgctccccctggcagcttcagccctagtgtgattaact Alignment from Exonerate_coding2genome GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCCCAC-TGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG ggccttggagtacattagaacttttccctgcttccctttctctgccttagGACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGTGTGAACCTTGGTCCTGAACGTATTGGGCCCCACCTGCTTTGAGTTACTTAGTGTCCTGGTCAAGGGGGGCTATGGCAAGgtaagtatatcctgctccccctggcagcttcagccctagtgtgattaact Alignment from GeneWise GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGGTCCTGAGCGCATCGGGCCC-CACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG ggccttggagtacattagaacttttccctgcttccctttctctgccttagGACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGTGTGAACCTTGGTCCTGAACGTATTGGGCCCCACCTGCTTTGAGTTACTTAGTGTCCTGGTCAAGGGGGGCTATGGCAAGgtaagtatatcctgctccccctggcagcttcagccctagtgtgattaact #### Rrp12_ID8295_28 --> 1 - 1 Original Alignment cATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGT-GGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTg agctgaagttagatggccctattatttgattgtttatttttctatttcagcATCGAGGAAATTTCAGCTGATTCAGAGGATGAGTTTGAGGAGGAAGAAAGAGGCCGGGGCAAGGAGCAGCAGAAGTTGGCGCAACAGAGGAGCCGAGCATGG---AAGGACGGTCGGCGGTGATGGGCCTCTCAACTTC------CCCAAGGTTGCACATCGTGTCCGTggtgaggaaggaaagctgaccagggaaaagttgccctcccctgttgctgga Alignment from CESAR cATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGT-GGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTg agctgaagttagatggccctattatttgattgtttatttttctatttcagcATCGAGGAAATTTCAGCTGATTCAGAGGATGAGTTTGAGGAGGAAGAAAGAGGCCGGGGCAAGGAGCAGCAGAAGTTGGCGCAACAGAGGAGCCGAGCATGG---AAGGACGGTCGGCGGTGATGGGCCTCTCAACTTC------CCCAAGGTTGCACATCGTGTCCGTggtgaggaaggaaagctgaccagggaaaagttgccctcccctgttgctgga Alignment from Spaln_aa2Genome CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGT-GGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG agctgaagttagatggccctattatttgattgtttatttttctatttcagCATCGAGGAAATTTCAGCTGATTCAGAGGATGAGTTTGAGGAGGAAGAAAGAGGCCGGGGCAAGGAGCAGCAGAAGTTGGCGCAACAGAGGAGCCGAGCATGG---AAGGACGGTcGGCGGTGATGGGCCTCTCAACTTC------CCCAAGGTTGCACATCGTGTCCGTGgtgaggaaggaaagctgaccagggaaaagttgccctcccctgttgctgga Alignment from Spaln_nt2Genome CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGT-GGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG agctgaagttagatggccctattatttgattgtttatttttctatttcagCATCGAGGAAATTTCAGCTGATTCAGAGGATGAGTTTGAGGAGGAAGAAAGAGGCCGGGGCAAGGAGCAGCAGAAGTTGGCGCAACAGAGGAGCCGAGCATG---GAAGGACGGTCGGCGGTGATGGGCCTCTCAACTTC------CCCAAGGTTGCACATCGTGTCCGTGgtgaggaaggaaagctgaccagggaaaagttgccctcccctgttgctgga Alignment from Pairagon CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGT-GGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG agctgaagttagatggccctattatttgattgtttatttttctatttcagCATCGAGGAAATTTCAGCTGATTCAGAGGATGAGTTTGAGGAGGAAGAAAGAGGCCGGGGCAAGGAGCAGCAGAAGTTGGCGCAACAGAGGAGCCGAGCATG---GAAGGACGGTCGGCGGTGATGGGCCTCTCAACTTC------CCCAAGGTTGCACATCGTGTCCGTGgtgaggaaggaaagctgaccagggaaaagttgccctcccctgttgctgga Alignment from Exonerate_protein2genome CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGT-GGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG agctgaagttagatggccctattatttgattgtttatttttctatttcagCATCGAGGAAATTTCAGCTGATTCAGAGGATGAGTTTGAGGAGGAAGAAAGAGGCCGGGGCAAGGAGCAGCAGAAGTTGGCGCAACAGAGGAGCCGAGCATGG---AAGGACGGTCGGCGGTGATGGGCCTCTCAACTTC------CCCAAGGTTGCACATCGTGTCCGTGgtgaggaaggaaagctgaccagggaaaagttgccctcccctgttgctgga Alignment from Exonerate_coding2genome CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGT-GGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG agctgaagttagatggccctattatttgattgtttatttttctatttcagCATCGAGGAAATTTCAGCTGATTCAGAGGATGAGTTTGAGGAGGAAGAAAGAGGCCGGGGCAAGGAGCAGCAGAAGTTGGCGCAACAGAGGAGCCGAGCATGG---AAGGACGGTCGGCGGTGATGGGCCTCTCAACTTC------CCCAAGGTTGCACATCGTGTCCGTGgtgaggaaggaaagctgaccagggaaaagttgccctcccctgttgctgga Alignment from GeneWise CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG agctgaagttagatggccctattatttgattgtttatttttctatttcagCATCGAGGAAATTTCAGCTGATTCAGAGGATGAGTTTGAGGAGGAAGAAAGAGGCCGGGGCAAGGAGCAGCAGAAGTTGGCGCAACAGAGGAGCCGAGCATGGA--AGGACGGTCGGCGGTGATGGGCCTCTCAACTTC------CCCAAGGTTGCACATCGTGTCCGTGgtgaggaaggaaagctgaccagggaaaagttgccctcccctgttgctgga #### Rrp12_ID8300_23 --> 0 - 1 Original Alignment GTGATCCTGTGCACCAAGGAGGTGTCAGTGGGTGCAAGGAAGAGTGCGTTTACCTTGCTGGTGGAGATG-GGCCATGCTTTCCTGCGATTTGGCTCCAACCAGGAAg ccagccagcctgtacttcagtgccatgttattttcatttgatattcgcagGTAATCCTATGCACCAAGGAGGTGTCAGTGAGTGCAAGGAAGAGTGCATTTACCTTGCTTGTGAAGATGCGGACATGCTTTCCTGTGCTTTGGCTCCAACCAGGAAggttggcggaggactgccttggccaagtgaggacttgtttttttctttttt Alignment from CESAR GTGATCCTGTGCACCAAGGAGGTGTCAGTGGGTGCAAGGAAGAGTGCGTTTACCTTGCTGGTGGAGATG-GGCCATGCTTTCCTGCGATTTGGCTCCAACCAGGAAg ccagccagcctgtacttcagtgccatgttattttcatttgatattcgcagGTAATCCTATGCACCAAGGAGGTGTCAGTGAGTGCAAGGAAGAGTGCATTTACCTTGCTTGTGAAGATGCGGACATGCTTTCCTGTGCTTTGGCTCCAACCAGGAAggttggcggaggactgccttggccaagtgaggacttgtttttttctttttt Alignment from Spaln_aa2Genome GTGATCCTGTGCACCAAGGAGGTGTCAGTGGGTGCAAGGAAGAGTGCGTTTACCTTGCTGGTGGAGATG-GGCCATGCTTTCCTGCGATTTGGCTCCAACCAGGAAG ccagccagcctgtacttcagtgccatgttattttcatttgatattcgcagGTAATCCTATGCACCAAGGAGGTGTCAGTGAGTGCAAGGAAGAGTGCATTTACCTTGCTTGTGAAGATGcGGACATGCTTTCCTGTGCTTTGGCTCCAACCAGGAAGgttggcggaggactgccttggccaagtgaggacttgtttttttctttttt Alignment from Spaln_nt2Genome GTGATCCTGTGCACCAAGGAGGTGTCAGTGGGTGCAAGGAAGAGTGCGTTTACCTTGCTGGTGGAGATG-GGCCATGCTTTCCTGCGATTTGGCTCCAACCAGGAAG ccagccagcctgtacttcagtgccatgttattttcatttgatattcgcagGTAATCCTATGCACCAAGGAGGTGTCAGTGAGTGCAAGGAAGAGTGCATTTACCTTGCTTGTGAAGATGCGGACATGCTTTCCTGTGCTTTGGCTCCAACCAGGAAGgttggcggaggactgccttggccaagtgaggacttgtttttttctttttt Alignment from Pairagon GTGATCCTGTGCACCAAGGAGGTGTCAGTGGGTGCAAGGAAGAGTGCGTTTACCTTGCTGGTGGAGATG-GGCCATGCTTTCCTGCGATTTGGCTCCAACCAGGAAG ccagccagcctgtacttcagtgccatgttattttcatttgatattcgcagGTAATCCTATGCACCAAGGAGGTGTCAGTGAGTGCAAGGAAGAGTGCATTTACCTTGCTTGTGAAGATGCGGACATGCTTTCCTGTGCTTTGGCTCCAACCAGGAAGgttggcggaggactgccttggccaagtgaggacttgtttttttctttttt Alignment from Exonerate_protein2genome GTGATCCTGTGCACCAAGGAGGTGTCAGTGGGTGCAAGGAAGAGTGCGTTTACCTTGCTGGTGGAGATG-GGCCATGCTTTCCTGCGATTTGGCTCCAACCAGGAAG ccagccagcctgtacttcagtgccatgttattttcatttgatattcgcagGTAATCCTATGCACCAAGGAGGTGTCAGTGAGTGCAAGGAAGAGTGCATTTACCTTGCTTGTGAAGATGCGGACATGCTTTCCTGTGCTTTGGCTCCAACCAGGAAGgttggcggaggactgccttggccaagtgaggacttgtttttttctttttt Alignment from Exonerate_coding2genome GTGATCCTGTGCACCAAGGAGGTGTCAGTGGGTGCAAGGAAGAGTGCGTTTACCTTGCTGGTGGAGATG-GGCCATGCTTTCCTGCGATTTGGCTCCAACCAGGAAG ccagccagcctgtacttcagtgccatgttattttcatttgatattcgcagGTAATCCTATGCACCAAGGAGGTGTCAGTGAGTGCAAGGAAGAGTGCATTTACCTTGCTTGTGAAGATGCGGACATGCTTTCCTGTGCTTTGGCTCCAACCAGGAAGgttggcggaggactgccttggccaagtgaggacttgtttttttctttttt Alignment from GeneWise GTGATCCTGTGCACCAAGGAGGTGTCAGTGGGTGCAAGGAAGAGTGCGTTTACCTTGCTGGTGGAG-ATGGGCCATGCTTTCCTGCGATTTGGCTCCAACCAGGAAG ccagccagcctgtacttcagtgccatgttattttcatttgatattcgcagGTAATCCTATGCACCAAGGAGGTGTCAGTGAGTGCAAGGAAGAGTGCATTTACCTTGCTTGTGAAGATGCGGACATGCTTTCCTGTGCTTTGGCTCCAACCAGGAAGgttggcggaggactgccttggccaagtgaggacttgtttttttctttttt #### Rrp12_ID8303_20 --> 1 - 0 Original Alignment aTTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAA-GCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ccagcactgagaagggatagcttcgtccctcttctgtctgattccactagaTTGTCTGTTCTAGATCTGGTTGTGGCTTTGGCTCCTTATTCAGATGAACGCTGCTAGCAGTAAATTATACTCTACCATCTGGCCCTACCTGGAGgttagttatccttgtctccattcatgatatgcccagatttcaccctggtt Alignment from CESAR aTTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAA-GCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ccagcactgagaagggatagcttcgtccctcttctgtctgattccactagaTTGTCTGTTCTAGATCTGGTTGTGGCTTTGGCTCCTTATTCAGATGAACGCTGCTAGCAGTAAATTATACTCTACCATCTGGCCCTACCTGGAGgttagttatccttgtctccattcatgatatgcccagatttcaccctggtt Alignment from Spaln_aa2Genome ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAA-GCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ccagcactgagaagggatagcttcgtccctcttctgtctgattccactagATTGTCTGTTCTAGATCTGGTTGTGGCTTTGGCTCCTTATTCAGATGAAcGCTGCTAGCAGTAAATTATACTCTACCATCTGGCCCTACCTGGAGgttagttatccttgtctccattcatgatatgcccagatttcaccctggtt Alignment from Spaln_nt2Genome ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAA-GCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ccagcactgagaagggatagcttcgtccctcttctgtctgattccactagATTGTCTGTTCTAGATCTGGTTGTGGCTTTGGCTCCTTATTCAGATGAACGCTGCTAGCAGTAAATTATACTCTACCATCTGGCCCTACCTGGAGgttagttatccttgtctccattcatgatatgcccagatttcaccctggtt Alignment from Pairagon ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAA-GCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ccagcactgagaagggatagcttcgtccctcttctgtctgattccactagATTGTCTGTTCTAGATCTGGTTGTGGCTTTGGCTCCTTATTCAGATGAACGCTGCTAGCAGTAAATTATACTCTACCATCTGGCCCTACCTGGAGgttagttatccttgtctccattcatgatatgcccagatttcaccctggtt Alignment from Exonerate_protein2genome ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAA-GCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ccagcactgagaagggatagcttcgtccctcttctgtctgattccactagATTGTCTGTTCTAGATCTGGTTGTGGCTTTGGCTCCTTATTCAGATGAACGCTGCTAGCAGTAAATTATACTCTACCATCTGGCCCTACCTGGAGgttagttatccttgtctccattcatgatatgcccagatttcaccctggtt Alignment from Exonerate_coding2genome ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAA-GCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ccagcactgagaagggatagcttcgtccctcttctgtctgattccactagATTGTCTGTTCTAGATCTGGTTGTGGCTTTGGCTCCTTATTCAGATGAACGCTGCTAGCAGTAAATTATACTCTACCATCTGGCCCTACCTGGAGgttagttatccttgtctccattcatgatatgcccagatttcaccctggtt Alignment from GeneWise ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAA-GCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ccagcactgagaagggatagcttcgtccctcttctgtctgattccactagATTGTCTGTTCTAGATCTGGTTGTGGCTTTGGCTCCTTATTCAGATGAACGCTGCTAGCAGTAAATTATACTCTACCATCTGGCCCTACCTGGAGgttagttatccttgtctccattcatgatatgcccagatttcaccctggtt #### Rrp12_ID8306_17 --> 0 - 1 Original Alignment ATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACT-GTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAg caagggatggagcatgtctatgaggcatgacggctttattgtcttcacagATCTGGACCCTTCAGCCTGGGTTCTGCACAAGGTCCACAGAAGTGGCTGCCTCTTTCAAAGGCCTGGCACGTGCTTTGGGTACAGCTATCAATGAGTGTCCAGACCTGAGGGTCAGTCGTTTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAggcaagagggaagccttttgggaagatgacctgggatgccaccatgctcta Alignment from CESAR ATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACT-GTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAg caagggatggagcatgtctatgaggcatgacggctttattgtcttcacagATCTGGACCCTTCAGCCTGGGTTCTGCACAAGGTCCACAGAAGTGGCTGCCTCTTTCAAAGGCCTGGCACGTGCTTTGGGTACAGCTATCAATGAGTGTCCAGACCTGAGGGTCAGTCGTTTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAggcaagagggaagccttttgggaagatgacctgggatgccaccatgctcta Alignment from Spaln_aa2Genome ATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACT-GTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAG caagggatggagcatgtctatgaggcatgacggctttattgtcttcacagATCTGGACCCTTCAGCCTGGGTTCTGCACAAGGTCCACAGAAGTGGCTGCCTCTTTCAAAGGCCTGGCACGTGCTTTGGGTACAGCTATCAATGAGTGTCCAGACCTGAGGGTCAGTcGTTTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAGgcaagagggaagccttttgggaagatgacctgggatgccaccatgctcta Alignment from Spaln_nt2Genome ATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACT-GTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAG caagggatggagcatgtctatgaggcatgacggctttattgtcttcacagATCTGGACCCTTCAGCCTGGGTTCTGCACAAGGTCCACAGAAGTGGCTGCCTCTTTCAAAGGCCTGGCACGTGCTTTGGGTACAGCTATCAATGAGTGTCCAGACCTGAGGGTCAGTCGTTTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAGgcaagagggaagccttttgggaagatgacctgggatgccaccatgctcta Alignment from Pairagon ATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACT-GTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAG caagggatggagcatgtctatgaggcatgacggctttattgtcttcacagATCTGGACCCTTCAGCCTGGGTTCTGCACAAGGTCCACAGAAGTGGCTGCCTCTTTCAAAGGCCTGGCACGTGCTTTGGGTACAGCTATCAATGAGTGTCCAGACCTGAGGGTCAGTCGTTTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAGgcaagagggaagccttttgggaagatgacctgggatgccaccatgctcta Alignment from Exonerate_protein2genome ATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACT-GTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAG caagggatggagcatgtctatgaggcatgacggctttattgtcttcacagATCTGGACCCTTCAGCCTGGGTTCTGCACAAGGTCCACAGAAGTGGCTGCCTCTTTCAAAGGCCTGGCACGTGCTTTGGGTACAGCTATCAATGAGTGTCCAGACCTGAGGGTCAGTCGTTTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAGgcaagagggaagccttttgggaagatgacctgggatgccaccatgctcta Alignment from Exonerate_coding2genome ATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTCACT-GTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAG caagggatggagcatgtctatgaggcatgacggctttattgtcttcacagATCTGGACCCTTCAGCCTGGGTTCTGCACAAGGTCCACAGAAGTGGCTGCCTCTTTCAAAGGCCTGGCACGTGCTTTGGGTACAGCTATCAATGAGTGTCCAGACCTGAGGGTCAGTCGTTTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTGTGAGGCAGgcaagagggaagccttttgggaagatgacctgggatgccaccatgctcta Alignment from GeneWise ATCTGGACCCTCCTGCCTGGGTTCTGCACAAGGCCCACAGATGTGGCTGCCTCCTTCAAAGGCCTGGCACGGACTCTGGGCACAGCTATCAATGAACGCCCAGACCTGAGGGTC-ACTGTGTGCCAGGCCCTACGTACCCTCATCACTAAGGGCT caagggatggagcatgtctatgaggcatgacggctttattgtcttcacagATCTGGACCCTTCAGCCTGGGTTCTGCACAAGGTCCACAGAAGTGGCTGCCTCTTTCAAAGGCCTGGCACGTGCTTTGGGTACAGCTATCAATGAGTGTCCAGACCTGAGGGTCAGTCGTTTGCCAGGCCCTACGTACCCTCATCACTAAGGGCTgtgaggcaggcaagagggaagccttttgggaagatgacctgggatgccaccatgctcta #### Sart1_ID958_17 --> 1 - 0 Original Alignment gGCCATTGATGAC-AAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gaagtcctcagaggacctgatggagctggctaatatgtcccactgcttaggGCCATTGATGACCAAGTATAGCCGACGGGAGGAGTATAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTATAAGCCTGATGTTAAGATTGAATATGTAGATGAGACAAGCAGGAAGCTGACTCCCAAAAAGgtaagtagaacatgtggaaatggtcggcccactggtgacagtgtatgttg Alignment from CESAR gGCCATTGATGAC-AAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gaagtcctcagaggacctgatggagctggctaatatgtcccactgcttaggGCCATTGATGACCAAGTATAGCCGACGGGAGGAGTATAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTATAAGCCTGATGTTAAGATTGAATATGTAGATGAGACAAGCAGGAAGCTGACTCCCAAAAAGgtaagtagaacatgtggaaatggtcggcccactggtgacagtgtatgttg Alignment from Spaln_aa2Genome GGCCATTGATGAC-AAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gaagtcctcagaggacctgatggagctggctaatatgtcccactgcttagGGCCATTGATGACcAAGTATAGCCGACGGGAGGAGTATAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTATAAGCCTGATGTTAAGATTGAATATGTAGATGAGACAAGCAGGAAGCTGACTCCCAAAAAGgtaagtagaacatgtggaaatggtcggcccactggtgacagtgtatgttg Alignment from Spaln_nt2Genome GGCCATTGATGAC-AAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gaagtcctcagaggacctgatggagctggctaatatgtcccactgcttagGGCCATTGATGACCAAGTATAGCCGACGGGAGGAGTATAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTATAAGCCTGATGTTAAGATTGAATATGTAGATGAGACAAGCAGGAAGCTGACTCCCAAAAAGgtaagtagaacatgtggaaatggtcggcccactggtgacagtgtatgttg Alignment from Pairagon GGCCATTGATGA-CAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gaagtcctcagaggacctgatggagctggctaatatgtcccactgcttagGGCCATTGATGACCAAGTATAGCCGACGGGAGGAGTATAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTATAAGCCTGATGTTAAGATTGAATATGTAGATGAGACAAGCAGGAAGCTGACTCCCAAAAAGgtaagtagaacatgtggaaatggtcggcccactggtgacagtgtatgttg Alignment from Exonerate_protein2genome GGCCATTGATGAC-AAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gaagtcctcagaggacctgatggagctggctaatatgtcccactgcttagGGCCATTGATGACCAAGTATAGCCGACGGGAGGAGTATAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTATAAGCCTGATGTTAAGATTGAATATGTAGATGAGACAAGCAGGAAGCTGACTCCCAAAAAGgtaagtagaacatgtggaaatggtcggcccactggtgacagtgtatgttg Alignment from Exonerate_coding2genome GGCCATTGATGAC-AAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gaagtcctcagaggacctgatggagctggctaatatgtcccactgcttagGGCCATTGATGACCAAGTATAGCCGACGGGAGGAGTATAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTATAAGCCTGATGTTAAGATTGAATATGTAGATGAGACAAGCAGGAAGCTGACTCCCAAAAAGgtaagtagaacatgtggaaatggtcggcccactggtgacagtgtatgttg Alignment from GeneWise GGCCATTGATGAC-AAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gaagtcctcagaggacctgatggagctggctaatatgtcccactgcttagGGCCATTGATGACCAAGTATAGCCGACGGGAGGAGTATAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTATAAGCCTGATGTTAAGATTGAATATGTAGATGAGACAAGCAGGAAGCTGACTCCCAAAAAGgtaagtagaacatgtggaaatggtcggcccactggtgacagtgtatgttg #### Sart1_ID959_16 --> 2 - 2 Original Alignment gaCTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTG-AAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGat ctccaaggattctgtctgaggcctaggaaaatagacttctgtttttgcaggaCTGCTAGAGACCACAGTACAAAAGGTGGCCTGGGTGCAAGGCTCCCAATAAGACATTGCCCTCAGCAGTGTACTGCATAGAGGATAAGatgtaagggttaccaaggcaacatgacatagggacagctatgaacatgggga Alignment from CESAR gaCTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTG-AAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGat ctccaaggattctgtctgaggcctaggaaaatagacttctgtttttgcaggaCTGCTAGAGACCACAGTACAAAAGGTGGCCTGGGTGCAAGGCTCCCAATAAGACATTGCCCTCAGCAGTGTACTGCATAGAGGATAAGatgtaagggttaccaaggcaacatgacatagggacagctatgaacatgggga Alignment from Spaln_aa2Genome GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTG-AAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT ctccaaggattctgtctgaggcctaggaaaatagacttctgtttttgcagGACTGCTAGAGACCACAGTACAAAAGGTGGCCTGGGTGcAAGGCTCCCAATAAGACATTGCCCTCAGCAGTGTACTGCATAGAGGATAAGATgtaagggttaccaaggcaacatgacatagggacagctatgaacatgggga Alignment from Spaln_nt2Genome GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTG-AAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT ctccaaggattctgtctgaggcctaggaaaatagacttctgtttttgcagGACTGCTAGAGACCACAGTACAAAAGGTGGCCTGGGTGCAAGGCTCCCAATAAGACATTGCCCTCAGCAGTGTACTGCATAGAGGATAAGATgtaagggttaccaaggcaacatgacatagggacagctatgaacatgggga Alignment from Pairagon GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTG-AAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT ctccaaggattctgtctgaggcctaggaaaatagacttctgtttttgcagGACTGCTAGAGACCACAGTACAAAAGGTGGCCTGGGTGCAAGGCTCCCAATAAGACATTGCCCTCAGCAGTGTACTGCATAGAGGATAAGATgtaagggttaccaaggcaacatgacatagggacagctatgaacatgggga Alignment from Exonerate_protein2genome GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTG-AAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT ctccaaggattctgtctgaggcctaggaaaatagacttctgtttttgcagGACTGCTAGAGACCACAGTACAAAAGGTGGCCTGGGTGCAAGGCTCCCAATAAGACATTGCCCTCAGCAGTGTACTGCATAGAGGATAAGATgtaagggttaccaaggcaacatgacatagggacagctatgaacatgggga Alignment from Exonerate_coding2genome GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTG-AAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT ctccaaggattctgtctgaggcctaggaaaatagacttctgtttttgcagGACTGCTAGAGACCACAGTACAAAAGGTGGCCTGGGTGCAAGGCTCCCAATAAGACATTGCCCTCAGCAGTGTACTGCATAGAGGATAAGATgtaagggttaccaaggcaacatgacatagggacagctatgaacatgggga Alignment from GeneWise GACTGCTGGAGACCACAGTACAAAAGGTGGCC-CGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT ctccaaggattctgtctgaggcctaggaaaatagacttctgtttttgcagGACTGCTAGAGACCACAGTACAAAAGGTGGCCTGGGTGCAAGGCTCCCAATAAGACATTGCCCTCAGCAGTGTACTGCATAGAGGATAAGATgtaagggttaccaaggcaacatgacatagggacagctatgaacatgggga #### Sart1_ID960_15 --> 0 - 1 Original Alignment TTCTCTGCTTCCTCTACCACCATCCTG-GATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAg tggatgggggatatggggctaccttctcatcttgtcttgtttcttaacagTTCTCTGCTTCTTCTACCACTATCCTGCGATGAGGAGCCCATCGTGAACAGAGGGCTAGCTGCTGCCCTGCTCCTGTGTCAGAACAAAggtgagtgctcaggaagggtgctctggcagagtgtgtatttcatccaggac Alignment from CESAR TTCTCTGCTTCCTCTACCACCATCCTG-GATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAg tggatgggggatatggggctaccttctcatcttgtcttgtttcttaacagTTCTCTGCTTCTTCTACCACTATCCTGCGATGAGGAGCCCATCGTGAACAGAGGGCTAGCTGCTGCCCTGCTCCTGTGTCAGAACAAAggtgagtgctcaggaagggtgctctggcagagtgtgtatttcatccaggac Alignment from Spaln_aa2Genome TTCTCTGCTTCCTCTACCACCATCCTG-GATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggatgggggatatggggctaccttctcatcttgtcttgtttcttaacagTTCTCTGCTTCTTCTACCACTATCCTGcGATGAGGAGCCCATCGTGAACAGAGGGCTAGCTGCTGCCCTGCTCCTGTGTCAGAACAAAGgtgagtgctcaggaagggtgctctggcagagtgtgtatttcatccaggac Alignment from Spaln_nt2Genome TTCTCTGCTTCCTCTACCACCATCCTG-GATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggatgggggatatggggctaccttctcatcttgtcttgtttcttaacagTTCTCTGCTTCTTCTACCACTATCCTGCGATGAGGAGCCCATCGTGAACAGAGGGCTAGCTGCTGCCCTGCTCCTGTGTCAGAACAAAGgtgagtgctcaggaagggtgctctggcagagtgtgtatttcatccaggac Alignment from Pairagon TTCTCTGCTTCCTCTACCACCATCCTG-GATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggatgggggatatggggctaccttctcatcttgtcttgtttcttaacagTTCTCTGCTTCTTCTACCACTATCCTGCGATGAGGAGCCCATCGTGAACAGAGGGCTAGCTGCTGCCCTGCTCCTGTGTCAGAACAAAGgtgagtgctcaggaagggtgctctggcagagtgtgtatttcatccaggac Alignment from Exonerate_protein2genome TTCTCTGCTTCCTCTACCACCATCCTG-GATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggatgggggatatggggctaccttctcatcttgtcttgtttcttaacagTTCTCTGCTTCTTCTACCACTATCCTGCGATGAGGAGCCCATCGTGAACAGAGGGCTAGCTGCTGCCCTGCTCCTGTGTCAGAACAAAGgtgagtgctcaggaagggtgctctggcagagtgtgtatttcatccaggac Alignment from Exonerate_coding2genome TTCTCTGCTTCCTCTACCACCATCCTG-GATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggatgggggatatggggctaccttctcatcttgtcttgtttcttaacagTTCTCTGCTTCTTCTACCACTATCCTGCGATGAGGAGCCCATCGTGAACAGAGGGCTAGCTGCTGCCCTGCTCCTGTGTCAGAACAAAGgtgagtgctcaggaagggtgctctggcagagtgtgtatttcatccaggac Alignment from GeneWise TTCTCTGCTTCCTCTACCACCATC-CTGGATGAGGAGCCCATCGTGAACAGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggatgggggatatggggctaccttctcatcttgtcttgtttcttaacagTTCTCTGCTTCTTCTACCACTATCCTGCGATGAGGAGCCCATCGTGAACAGAGGGCTAGCTGCTGCCCTGCTCCTGTGTCAGAACAAAGgtgagtgctcaggaagggtgctctggcagagtgtgtatttcatccaggac #### Sart1_ID961_14 --> 0 - 0 Original Alignment GACTTTGAAAGGGATGAG-GAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tagcaggtagggttgagtctgtccatgagttttctcattcatttccacagGACTTTGAGAGGGATGAGCGAGCACTCAGCCAATGGTGGCTCTGAATCGGATGGGGAAGAGAACATTGGCTGGAGCACAGTCAACCTGGATGACGAGAAGCAACCTCAGGATgtaacaactgatgggcatgggtgtggggatccagggtggctgttcagtac Alignment from CESAR GACTTTGAAAGGGATGAG-GAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tagcaggtagggttgagtctgtccatgagttttctcattcatttccacagGACTTTGAGAGGGATGAGCGAGCACTCAGCCAATGGTGGCTCTGAATCGGATGGGGAAGAGAACATTGGCTGGAGCACAGTCAACCTGGATGACGAGAAGCAACCTCAGGATgtaacaactgatgggcatgggtgtggggatccagggtggctgttcagtac Alignment from Spaln_aa2Genome GACTTTGAAAGGGATGAG-GAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tagcaggtagggttgagtctgtccatgagttttctcattcatttccacagGACTTTGAGAGGGATGAGcGAGCACTCAGCCAATGGTGGCTCTGAATCGGATGGGGAAGAGAACATTGGCTGGAGCACAGTCAACCTGGATGACGAGAAGCAACCTCAGGATgtaacaactgatgggcatgggtgtggggatccagggtggctgttcagtac Alignment from Spaln_nt2Genome GACTTTGAAAGGGATGAG-GAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tagcaggtagggttgagtctgtccatgagttttctcattcatttccacagGACTTTGAGAGGGATGAGCGAGCACTCAGCCAATGGTGGCTCTGAATCGGATGGGGAAGAGAACATTGGCTGGAGCACAGTCAACCTGGATGACGAGAAGCAACCTCAGGATgtaacaactgatgggcatgggtgtggggatccagggtggctgttcagtac Alignment from Pairagon GACTTTGAAAGGGATGAG-GAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tagcaggtagggttgagtctgtccatgagttttctcattcatttccacagGACTTTGAGAGGGATGAGCGAGCACTCAGCCAATGGTGGCTCTGAATCGGATGGGGAAGAGAACATTGGCTGGAGCACAGTCAACCTGGATGACGAGAAGCAACCTCAGGATgtaacaactgatgggcatgggtgtggggatccagggtggctgttcagtac Alignment from Exonerate_protein2genome GACTTTGAAAGGGATGAG-GAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tagcaggtagggttgagtctgtccatgagttttctcattcatttccacagGACTTTGAGAGGGATGAGCGAGCACTCAGCCAATGGTGGCTCTGAATCGGATGGGGAAGAGAACATTGGCTGGAGCACAGTCAACCTGGATGACGAGAAGCAACCTCAGGATgtaacaactgatgggcatgggtgtggggatccagggtggctgttcagtac Alignment from Exonerate_coding2genome GACTTTGAAAGGGATGAG-GAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tagcaggtagggttgagtctgtccatgagttttctcattcatttccacagGACTTTGAGAGGGATGAGCGAGCACTCAGCCAATGGTGGCTCTGAATCGGATGGGGAAGAGAACATTGGCTGGAGCACAGTCAACCTGGATGACGAGAAGCAACCTCAGGATgtaacaactgatgggcatgggtgtggggatccagggtggctgttcagtac Alignment from GeneWise GACTTTGAAAGGGATGAG-GAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tagcaggtagggttgagtctgtccatgagttttctcattcatttccacagGACTTTGAGAGGGATGAGCGAGCACTCAGCCAATGGTGGCTCTGAATCGGATGGGGAAGAGAACATTGGCTGGAGCACAGTCAACCTGGATGACGAGAAGCAACCTCAGGATgtaacaactgatgggcatgggtgtggggatccagggtggctgttcagtac #### Sart1_ID962_13 --> 0 - 0 Original Alignment GTGCTGGAGATTGTG-AAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG accccatgaacttggggtctgcccacagactaatcttgtgcatctttcagGTGCTGGAGATCGTGCAAGAAACTAGAGTCCCGTCAGCGTGGCTGGGAGGAGGGGGAGGACCCAGAGAGGAAGGGGACGTCAGTGTTCAATGCCACTTCAGAATTCTGCTGTACACTGGGGGAGCTCCCCACCTATGGGTTGGCAGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaagacaagtgttgcctggcttttgtccttaggctgctgatgcttctag Alignment from CESAR GTGCTGGAGATTGTG-AAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG accccatgaacttggggtctgcccacagactaatcttgtgcatctttcagGTGCTGGAGATCGTGCAAGAAACTAGAGTCCCGTCAGCGTGGCTGGGAGGAGGGGGAGGACCCAGAGAGGAAGGGGACGTCAGTGTTCAATGCCACTTCAGAATTCTGCTGTACACTGGGGGAGCTCCCCACCTATGGGTTGGCAGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaagacaagtgttgcctggcttttgtccttaggctgctgatgcttctag Alignment from Spaln_aa2Genome GATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG accccatgaacttggggtctgcccacagactaatcttgtgcatctttcaggtgctggagATCGTGCAAGAAACTAGAGTCCCGTCAGCGTGGCTGGGAGGAGGGGGAGGACCCAGAGAGGAAGGGGACGTCAGTGTTCAATGCCACTTCAGAATTCTGCTGTACACTGGGGGAGCTCCCCACCTATGGGTTGGCAGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaagacaagtgttgcctggcttttgtccttaggctgctgatgcttctag Alignment from Spaln_nt2Genome GTGCTGGAGATTGTG-AAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG accccatgaacttggggtctgcccacagactaatcttgtgcatctttcagGTGCTGGAGATCGTGCAAGAAACTAGAGTCCCGTCAGCGTGGCTGGGAGGAGGGGGAGGACCCAGAGAGGAAGGGGACGTCAGTGTTCAATGCCACTTCAGAATTCTGCTGTACACTGGGGGAGCTCCCCACCTATGGGTTGGCAGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaagacaagtgttgcctggcttttgtccttaggctgctgatgcttctag Alignment from Pairagon GTGCTGGAGATTGTG-AAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG accccatgaacttggggtctgcccacagactaatcttgtgcatctttcagGTGCTGGAGATCGTGCAAGAAACTAGAGTCCCGTCAGCGTGGCTGGGAGGAGGGGGAGGACCCAGAGAGGAAGGGGACGTCAGTGTTCAATGCCACTTCAGAATTCTGCTGTACACTGGGGGAGCTCCCCACCTATGGGTTGGCAGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaagacaagtgttgcctggcttttgtccttaggctgctgatgcttctag Alignment from Exonerate_protein2genome GTGCTGGAGATTGTG-AAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG accccatgaacttggggtctgcccacagactaatcttgtgcatctttcagGTGCTGGAGATCGTGCAAGAAACTAGAGTCCCGTCAGCGTGGCTGGGAGGAGGGGGAGGACCCAGAGAGGAAGGGGACGTCAGTGTTCAATGCCACTTCAGAATTCTGCTGTACACTGGGGGAGCTCCCCACCTATGGGTTGGCAGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaagacaagtgttgcctggcttttgtccttaggctgctgatgcttctag Alignment from Exonerate_coding2genome GTGCTGGAGATTGTG-AAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG accccatgaacttggggtctgcccacagactaatcttgtgcatctttcagGTGCTGGAGATCGTGCAAGAAACTAGAGTCCCGTCAGCGTGGCTGGGAGGAGGGGGAGGACCCAGAGAGGAAGGGGACGTCAGTGTTCAATGCCACTTCAGAATTCTGCTGTACACTGGGGGAGCTCCCCACCTATGGGTTGGCAGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaagacaagtgttgcctggcttttgtccttaggctgctgatgcttctag Alignment from GeneWise GATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG accccatgaacttggggtctgcccacagactaatcttgtgcatctttcaggtgctggagATCGTGCAAGAAACTAGAGTCCCGTCAGCGTGGCTGGGAGGAGGGGGAGGACCCAGAGAGGAAGGGGACGTCAGTGTTCAATGCCACTTCAGAATTCTGCTGTACACTGGGGGAGCTCCCCACCTATGGGTTGGCAGGCAACCGTGAGGGGCAGGAAGAGCTCATGgtaagacaagtgttgcctggcttttgtccttaggctgctgatgcttctag #### Sart1_ID964_11 --> 1 - 1 Original Alignment gCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAG-GAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAg gtggagcagcttaaaagatacaatttacggtgatagaacttcttccccaggCTTCGGGGCCGGGGTCGACACCGAGTTCCC------AAGGAGCGAGACCCTTGAGGATGAGGAGAAGGACCTTGTGGTCAAGCCACCACCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAggtgcgtggttgagtaacggggccagggtgagtctgcaggcaagggcagtt Alignment from CESAR gCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAg gtggagcagcttaaaagatacaatttacggtgatagaacttcttccccaggCTTCGGGGCCGGGGTCGACACCGAGTTCCCAAG---GAG--CGAGACCCTTGAGGATGAGGAGAAGGACCTTGTGGTCAAGCCACCACCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAggtgcgtggttgagtaacggggccagggtgagtctgcaggcaagggcagtt Alignment from Spaln_aa2Genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG gtggagcagcttaaaagatacaatttacggtgatagaacttcttccccagGCTTCGGGGCCGGGGTCGACACCGAGTTCCCAAGG-----AGCGAGACCCTTGAGGATGAGGAGAAGGACCTTGTGGTCAAGCCACCACCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAGgtgcgtggttgagtaacggggccagggtgagtctgcaggcaagggcagtt Alignment from Spaln_nt2Genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG gtggagcagcttaaaagatacaatttacggtgatagaacttcttccccagGCTTCGGGGCCGGGGTCGACACCGAGTTCCCAAGGAG-----CGAGACCCTTGAGGATGAGGAGAAGGACCTTGTGGTCAAGCCACCACCATCAGATGACACTCGAGT------CATGGACATCAGTGATGAAGgtgcgtggttgagtaacggggccagggtgagtctgcaggcaagggcagtt Alignment from Pairagon GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG gtggagcagcttaaaagatacaatttacggtgatagaacttcttccccagGCTTCGGGGCCGGGGTCGACACCGAGTTCCCAAGGAG-----CGAGACCCTTGAGGATGAGGAGAAGGACCTTGTGGTCAAGCCACCACCATCAGATGACACTCGAGT------CATGGACATCAGTGATGAAGgtgcgtggttgagtaacggggccagggtgagtctgcaggcaagggcagtt Alignment from Exonerate_protein2genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAG-GAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG gtggagcagcttaaaagatacaatttacggtgatagaacttcttccccagGCTTCGGGGCCGGGGTCGACACCGAGTTCCC------AAGGAGCGAGACCCTTGAGGATGAGGAGAAGGACCTTGTGGTCAAGCCACCACCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAGgtgcgtggttgagtaacggggccagggtgagtctgcaggcaagggcagtt Alignment from Exonerate_coding2genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAG-GAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG gtggagcagcttaaaagatacaatttacggtgatagaacttcttccccagGCTTCGGGGCCGGGGTCGACACCGAGTTCCC------AAGGAGCGAGACCCTTGAGGATGAGGAGAAGGACCTTGTGGTCAAGCCACCACCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAGgtgcgtggttgagtaacggggccagggtgagtctgcaggcaagggcagtt Alignment from GeneWise GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG gtggagcagcttaaaagatacaatttacggtgatagaacttcttccccagGCTTCGGGGCCGGGGTCGACACCGAGTTCCCAAG---GAGC--GAGACCCTTGAGGATGAGGAGAAGGACCTTGTGGTCAAGCCACCACCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAGgtgcgtggttgagtaacggggccagggtgagtctgcaggcaagggcagtt #### Sart1_ID966_9 --> 0 - 0 Original Alignment CAAAAACCTCGTTCTATC-CTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG taatctggatttccatagtttctggtctatggagttcttctcattcccagCAAAAACCTCGTTCAATTCCTGGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGAATGGCTGATGGACTGAGGGAACAAGAGTTGGAAGAAATCCGCACCAAGCTACGGCTGCCAGCCCAGTCTCTCAGTTCCATGGGCCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagccaccaatttgtgatggtacaatcagccaacagctaagccaagta Alignment from CESAR CAAAAACCTCGTTCTATC-CTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG taatctggatttccatagtttctggtctatggagttcttctcattcccagCAAAAACCTCGTTCAATTCCTGGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGAATGGCTGATGGACTGAGGGAACAAGAGTTGGAAGAAATCCGCACCAAGCTACGGCTGCCAGCCCAGTCTCTCAGTTCCATGGGCCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagccaccaatttgtgatggtacaatcagccaacagctaagccaagta Alignment from Spaln_aa2Genome CAAAAACCTCGTTCTATC-CTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG taatctggatttccatagtttctggtctatggagttcttctcattcccagCAAAAACCTCGTTCAATTcCTGGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGAATGGCTGATGGACTGAGGGAACAAGAGTTGGAAGAAATCCGCACCAAGCTACGGCTGCCAGCCCAGTCTCTCAGTTCCATGGGCCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagccaccaatttgtgatggtacaatcagccaacagctaagccaagta Alignment from Spaln_nt2Genome CAAAAACCTCGTTCTAT-CCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG taatctggatttccatagtttctggtctatggagttcttctcattcccagCAAAAACCTCGTTCAATTCCTGGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGAATGGCTGATGGACTGAGGGAACAAGAGTTGGAAGAAATCCGCACCAAGCTACGGCTGCCAGCCCAGTCTCTCAGTTCCATGGGCCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagccaccaatttgtgatggtacaatcagccaacagctaagccaagta Alignment from Pairagon CAAAAACCTCGTTCTA-TCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG taatctggatttccatagtttctggtctatggagttcttctcattcccagCAAAAACCTCGTTCAATTCCTGGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGAATGGCTGATGGACTGAGGGAACAAGAGTTGGAAGAAATCCGCACCAAGCTACGGCTGCCAGCCCAGTCTCTCAGTTCCATGGGCCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagccaccaatttgtgatggtacaatcagccaacagctaagccaagta Alignment from Exonerate_protein2genome CAAAAACCTCGTTCTATC-CTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG taatctggatttccatagtttctggtctatggagttcttctcattcccagCAAAAACCTCGTTCAATTCCTGGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGAATGGCTGATGGACTGAGGGAACAAGAGTTGGAAGAAATCCGCACCAAGCTACGGCTGCCAGCCCAGTCTCTCAGTTCCATGGGCCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagccaccaatttgtgatggtacaatcagccaacagctaagccaagta Alignment from Exonerate_coding2genome CAAAAACCTCGTTCTATC-CTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG taatctggatttccatagtttctggtctatggagttcttctcattcccagCAAAAACCTCGTTCAATTCCTGGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGAATGGCTGATGGACTGAGGGAACAAGAGTTGGAAGAAATCCGCACCAAGCTACGGCTGCCAGCCCAGTCTCTCAGTTCCATGGGCCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagccaccaatttgtgatggtacaatcagccaacagctaagccaagta Alignment from GeneWise TCGTTCTATC---------CTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG taatctggatttccatagtttctggtctatggagttcttctcattcccagCAAAAACCTCGTTCAATTCCTGGCCAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAGGGTGGAATGGCTGATGGACTGAGGGAACAAGAGTTGGAAGAAATCCGCACCAAGCTACGGCTGCCAGCCCAGTCTCTCAGTTCCATGGGCCCAAGGCTTGCCTCTGAGTACCTCAGTCCTGAAGAGATGgtgagccaccaatttgtgatggtacaatcagccaacagctaagccaagta #### Sart1_ID969_6 --> 0 - 0 Original Alignment GCTAAGCTACTAGAGGAGATGGACCAAGAG-TTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG tgtgagttttgggacaccaacaatgatgtctctggcctgcaactttccagGCTAAGCTATTGGAGGAGATGGATCAAGAGCTTTGGTGTGAGCACTTTAGTTGAGGAGGAGTTTGAGCAGAGGCGACAGgtaggaaccaatttccgaagattatctggtagacatcatttcaattttgg Alignment from CESAR GCTAAGCTACTAGAGGAGATGGACCAAGAG-TTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG tgtgagttttgggacaccaacaatgatgtctctggcctgcaactttccagGCTAAGCTATTGGAGGAGATGGATCAAGAGCTTTGGTGTGAGCACTTTAGTTGAGGAGGAGTTTGAGCAGAGGCGACAGgtaggaaccaatttccgaagattatctggtagacatcatttcaattttgg Alignment from Spaln_aa2Genome GCTAAGCTACTAGAGGAGATGGACCAAGAG-TTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG tgtgagttttgggacaccaacaatgatgtctctggcctgcaactttccagGCTAAGCTATTGGAGGAGATGGATCAAGAGcTTTGGTGTGAGCACTTTAGTTGAGGAGGAGTTTGAGCAGAGGCGACAGgtaggaaccaatttccgaagattatctggtagacatcatttcaattttgg Alignment from Spaln_nt2Genome GCTAAGCTACTAGAGGAGATGGACCAAGAG-TTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG tgtgagttttgggacaccaacaatgatgtctctggcctgcaactttccagGCTAAGCTATTGGAGGAGATGGATCAAGAGCTTTGGTGTGAGCACTTTAGTTGAGGAGGAGTTTGAGCAGAGGCGACAGgtaggaaccaatttccgaagattatctggtagacatcatttcaattttgg Alignment from Pairagon GCTAAGCTACTAGAGGAGATGGACCAAGAG-TTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG tgtgagttttgggacaccaacaatgatgtctctggcctgcaactttccagGCTAAGCTATTGGAGGAGATGGATCAAGAGCTTTGGTGTGAGCACTTTAGTTGAGGAGGAGTTTGAGCAGAGGCGACAGgtaggaaccaatttccgaagattatctggtagacatcatttcaattttgg Alignment from Exonerate_protein2genome GCTAAGCTACTAGAGGAGATGGACCAAGAG-TTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG tgtgagttttgggacaccaacaatgatgtctctggcctgcaactttccagGCTAAGCTATTGGAGGAGATGGATCAAGAGCTTTGGTGTGAGCACTTTAGTTGAGGAGGAGTTTGAGCAGAGGCGACAGgtaggaaccaatttccgaagattatctggtagacatcatttcaattttgg Alignment from Exonerate_coding2genome GCTAAGCTACTAGAGGAGATGGACCAAGAG-TTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG tgtgagttttgggacaccaacaatgatgtctctggcctgcaactttccagGCTAAGCTATTGGAGGAGATGGATCAAGAGCTTTGGTGTGAGCACTTTAGTTGAGGAGGAGTTTGAGCAGAGGCGACAGgtaggaaccaatttccgaagattatctggtagacatcatttcaattttgg Alignment from GeneWise GCTAAGCTACTAGAGGAGATGGACCAA-GAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG tgtgagttttgggacaccaacaatgatgtctctggcctgcaactttccagGCTAAGCTATTGGAGGAGATGGATCAAGAGCTTTGGTGTGAGCACTTTAGTTGAGGAGGAGTTTGAGCAGAGGCGACAGgtaggaaccaatttccgaagattatctggtagacatcatttcaattttgg #### Sart1_ID970_5 --> 1 - 0 Original Alignment gAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCA-GCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG gcagatcaagagcacatgtaggcttgatgtctcttcttttctccactcagcAAAATAAAAACCCTAGGAGAGGATGACCCCTGGCTGGATGACACTGCACGCCTGGATAGAGAGAAGC------CTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgtaggtgcacctggcaatgtagggcagttgccagggtgctctgtgctcag Alignment from CESAR gAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCA-GCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG gcagatcaagagcacatgtaggcttgatgtctcttcttttctccactcagcAAAATAAAAACCCTAGGAGAGGATGACCCCTGGCTGGATGACACTGCACGCCTGGATAGAGAGAAGC------CTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgtaggtgcacctggcaatgtagggcagttgccagggtgctctgtgctcag Alignment from Spaln_aa2Genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCA-GCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG gcagatcaagagcacatgtaggcttgatgtctcttcttttctccactcagCAAAATAAAAACCCTAGGAGAGGATGACCCCTGGCTGGATGACACTGCAcGCCTGGATAGAGAGAAGC------CTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgtaggtgcacctggcaatgtagggcagttgccagggtgctctgtgctcag Alignment from Spaln_nt2Genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCA-GCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG gcagatcaagagcacatgtaggcttgatgtctcttcttttctccactcagCAAAATAAAAACCCTAGGAGAGGATGACCCCTGGCTGGATGACACTGCACGCCTGGATAGAGAGAAGC------CTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgtaggtgcacctggcaatgtagggcagttgccagggtgctctgtgctcag Alignment from Pairagon GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCA-GCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG gcagatcaagagcacatgtaggcttgatgtctcttcttttctccactcagCAAAATAAAAACCCTAGGAGAGGATGACCCCTGGCTGGATGACACTGCACGCCTGGATAGAGAGAAGC------CTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgtaggtgcacctggcaatgtagggcagttgccagggtgctctgtgctcag Alignment from Exonerate_protein2genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCA-GCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG gcagatcaagagcacatgtaggcttgatgtctcttcttttctccactcagCAAAATAAAAACCCTAGGAGAGGATGACCCCTGGCTGGATGACACTGCACGCCTGGATAGAGAGAAGC------CTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgtaggtgcacctggcaatgtagggcagttgccagggtgctctgtgctcag Alignment from Exonerate_coding2genome GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCA-GCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG gcagatcaagagcacatgtaggcttgatgtctcttcttttctccactcagCAAAATAAAAACCCTAGGAGAGGATGACCCCTGGCTGGATGACACTGCACGCCTGGATAGAGAGAAGC------CTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgtaggtgcacctggcaatgtagggcagttgccagggtgctctgtgctcag Alignment from GeneWise GAAAATAAAGACACTGGGGGAGGATGACCCCTGGCTGGATGATACTGCA-GCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG gcagatcaagagcacatgtaggcttgatgtctcttcttttctccactcagCAAAATAAAAACCCTAGGAGAGGATGACCCCTGGCTGGATGACACTGCACGCCTGGATAGAGAGAAGC------CTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgtaggtgcacctggcaatgtagggcagttgccagggtgctctgtgctcag #### Sart1_ID971_4 --> 2 - 2 Original Alignment agGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGG-GAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGgg tccccaccagctatgggaagcatagtgtgatcccttttcttgttttgcagagGCAGGCACCAAGAAGGAGTCTGTTGCAGCC---GTCATCAACCCCATGGCCTTACGACAGCGGGAAGAACTGCGGCGAGAGGCTGGCAGCTGCCAAGGAAAAATGCTTGTTGAACCAAAAGTTGgggtaagtgtttcttaggcaagggcagagccagctttcccattcttgtgtag Alignment from CESAR agGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGG-GAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGgg tccccaccagctatgggaagcatagtgtgatcccttttcttgttttgcagagGCAGGCACCAAGAAGGAGTCTGTTGCAGCC---GTCATCAACCCCATGGCCTTACGACAGCGGGAAGAACTGCGGCGAGAGGCTGGCAGCTGCCAAGGAAAAATGCTTGTTGAACCAAAAGTTGgggtaagtgtttcttaggcaagggcagagccagctttcccattcttgtgtag Alignment from Spaln_aa2Genome AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGG-GAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG tccccaccagctatgggaagcatagtgtgatcccttttcttgttttgcagAGGCAGGCACCAAGAAGGAGTCTGTTGCAGCC---GTCATCAACCCCATGGCCTTACGACAGCGGGAAGAACTGCGGcGAGAGGCTGGCAGCTGCCAAGGAAAAATGCTTGTTGAACCAAAAGTTGGGgtaagtgtttcttaggcaagggcagagccagctttcccattcttgtgtag Alignment from Spaln_nt2Genome AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGG-GAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG tccccaccagctatgggaagcatagtgtgatcccttttcttgttttgcagAGGCAGGCACCAAGAAGGAGTCTGTTGCAGCC---GTCATCAACCCCATGGCCTTACGACAGCGGGAAGAACTGCGGCGAGAGGCTGGCAGCTGCCAAGGAAAAATGCTTGTTGAACCAAAAGTTGGGgtaagtgtttcttaggcaagggcagagccagctttcccattcttgtgtag Alignment from Pairagon AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGG-GAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG tccccaccagctatgggaagcatagtgtgatcccttttcttgttttgcagAGGCAGGCACCAAGAAGGAGTCTGTTGCAGCC---GTCATCAACCCCATGGCCTTACGACAGCGGGAAGAACTGCGGCGAGAGGCTGGCAGCTGCCAAGGAAAAATGCTTGTTGAACCAAAAGTTGGGgtaagtgtttcttaggcaagggcagagccagctttcccattcttgtgtag Alignment from Exonerate_protein2genome AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGG-GAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG tccccaccagctatgggaagcatagtgtgatcccttttcttgttttgcagAGGCAGGCACCAAGAAGGAGTCTGTTGCAGCC---GTCATCAACCCCATGGCCTTACGACAGCGGGAAGAACTGCGGCGAGAGGCTGGCAGCTGCCAAGGAAAAATGCTTGTTGAACCAAAAGTTGGGgtaagtgtttcttaggcaagggcagagccagctttcccattcttgtgtag Alignment from Exonerate_coding2genome AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGG-GAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG tccccaccagctatgggaagcatagtgtgatcccttttcttgttttgcagAGGCAGGCACCAAGAAGGAGTCTGTTGCAGCC---GTCATCAACCCCATGGCCTTACGACAGCGGGAAGAACTGCGGCGAGAGGCTGGCAGCTGCCAAGGAAAAATGCTTGTTGAACCAAAAGTTGGGgtaagtgtttcttaggcaagggcagagccagctttcccattcttgtgtag Alignment from GeneWise AGGCGGGCACCAAGGAGGAGCCCGTGGCAGCCGATGTTATCAACCCCATGGCCTTGCGACAGCGGGAAGAACTGCGG-GAGAAGCTGGCAGCTGCCAAGGAAAAACGCTTGCTGAACCAAAAATTGGG tccccaccagctatgggaagcatagtgtgatcccttttcttgttttgcagAGGCAGGCACCAAGAAGGAGTCTGTTGCAGCC---GTCATCAACCCCATGGCCTTACGACAGCGGGAAGAACTGCGGCGAGAGGCTGGCAGCTGCCAAGGAAAAATGCTTGTTGAACCAAAAGTTGGGgtaagtgtttcttaggcaagggcagagccagctttcccattcttgtgtag #### Sart1_ID972_3 --> 1 - 1 Original Alignment tAAACTCCGAGCAAAGTTGGGGCTGAAGCCCTTG-GAGGTCAATGCTGTTAAGAAAg attggaaggcccccttctcagggcctaacttttcttttctttttccccagtAAACTTCAAGCAAAGTTGGGGCTGAGGCCCCTGCGAGGTCAATGCTGTTCAAAAAggtgagtgcaaggcagacattggggtttagtgggcagagatgtggtactta Alignment from CESAR tAAACTCCGAGCAAAGTTGGGGCTGAAGCCCTTG-GAGGTCAATGCTGTTAAGAAAg attggaaggcccccttctcagggcctaacttttcttttctttttccccagtAAACTTCAAGCAAAGTTGGGGCTGAGGCCCCTGCGAGGTCAATGCTGTTCAAAAAggtgagtgcaaggcagacattggggtttagtgggcagagatgtggtactta Alignment from Spaln_aa2Genome TAAACTCCGAGCAAAGTTGGGGCTGAAGCCCTTG-GAGGTCAATGCTGTTAAGAAAG attggaaggcccccttctcagggcctaacttttcttttctttttccccagTAAACTTCAAGCAAAGTTGGGGCTGAGGCCCCTGcGAGGTCAATGCTGTTCAAAAAGgtgagtgcaaggcagacattggggtttagtgggcagagatgtggtactta Alignment from Spaln_nt2Genome TAAACTCCGAGCAAAGTTGGGGCTGAAGCCCTTG-GAGGTCAATGCTGTTAAGAAAG attggaaggcccccttctcagggcctaacttttcttttctttttccccagTAAACTTCAAGCAAAGTTGGGGCTGAGGCCCCTGCGAGGTCAATGCTGTTCAAAAAGgtgagtgcaaggcagacattggggtttagtgggcagagatgtggtactta Alignment from Pairagon TAAACTCCGAGCAAAGTTGGGGCTGAAGCCCTTG-GAGGTCAATGCTGTTAAGAAAG attggaaggcccccttctcagggcctaacttttcttttctttttccccagTAAACTTCAAGCAAAGTTGGGGCTGAGGCCCCTGCGAGGTCAATGCTGTTCAAAAAGgtgagtgcaaggcagacattggggtttagtgggcagagatgtggtactta Alignment from Exonerate_protein2genome TAAACTCCGAGCAAAGTTGGGGCTGAAGCCCTTG-GAGGTCAATGCTGTTAAGAAAG attggaaggcccccttctcagggcctaacttttcttttctttttccccagTAAACTTCAAGCAAAGTTGGGGCTGAGGCCCCTGCGAGGTCAATGCTGTTCAAAAAGgtgagtgcaaggcagacattggggtttagtgggcagagatgtggtactta Alignment from Exonerate_coding2genome attggaaggcccccttctcagggcctaacttttcttttctttttccccagtaaacttcaagcaaagttggggctgaggcccctgcgaggtcaatgctgttcaaaaaggtgagtgcaaggcagacattggggtttagtgggcagagatgtggtactta Alignment from GeneWise attggaaggcccccttctcagggcctaacttttcttttctttttccccagtaaacttcaagcaaagttggggctgaggcccctgcgaggtcaatgctgttcaaaaaggtgagtgcaaggcagacattggggtttagtgggcagagatgtggtactta #### Sec31b_ID9028_24 --> 0 - 0 Original Alignment AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGC-CTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctagtgtcaggagtcattattaggatcattcattttcttacatataacagAAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGACACCCTTGAATGTCTGTATGAGAAGCTTTGTGAAGGGACAgtgaggcctctgtgcagggtacctacactcctgcctagtttcaaagacat Alignment from CESAR AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGC-CTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctagtgtcaggagtcattattaggatcattcattttcttacatataacagAAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGACACCCTTGAATGTCTGTATGAGAAGCTTTGTGAAGGGACAgtgaggcctctgtgcagggtacctacactcctgcctagtttcaaagacat Alignment from Spaln_aa2Genome AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGC-CTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctagtgtcaggagtcattattaggatcattcattttcttacatataacagAAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGACACcCTTGAATGTCTGTATGAGAAGCTTTGTGAAGGGACAgtgaggcctctgtgcagggtacctacactcctgcctagtttcaaagacat Alignment from Spaln_nt2Genome AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGCC-TAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctagtgtcaggagtcattattaggatcattcattttcttacatataacagAAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGACACCCTTGAATGTCTGTATGAGAAGCTTTGTGAAGGGACAgtgaggcctctgtgcagggtacctacactcctgcctagtttcaaagacat Alignment from Pairagon AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCG-CCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctagtgtcaggagtcattattaggatcattcattttcttacatataacagAAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGACACCCTTGAATGTCTGTATGAGAAGCTTTGTGAAGGGACAgtgaggcctctgtgcagggtacctacactcctgcctagtttcaaagacat Alignment from Exonerate_protein2genome AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGC-CTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctagtgtcaggagtcattattaggatcattcattttcttacatataacagAAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGACACCCTTGAATGTCTGTATGAGAAGCTTTGTGAAGGGACAgtgaggcctctgtgcagggtacctacactcctgcctagtttcaaagacat Alignment from Exonerate_coding2genome AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGCCGC-CTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctagtgtcaggagtcattattaggatcattcattttcttacatataacagAAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGACACCCTTGAATGTCTGTATGAGAAGCTTTGTGAAGGGACAgtgaggcctctgtgcagggtacctacactcctgcctagtttcaaagacat Alignment from GeneWise AAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGC-CGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctagtgtcaggagtcattattaggatcattcattttcttacatataacagAAAACAAAAAGGAAGCTGGAGGAGGCAGCCCGACACCCTTGAATGTCTGTATGAGAAGCTTTGTGAAGGGACAgtgaggcctctgtgcagggtacctacactcctgcctagtttcaaagacat #### Sec31b_ID9031_21 --> 2 - 0 Original Alignment gaCCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAAC-CTCCAAAGGAAAAAG acattgtcaaggctcttaatgcctagaacctgtgcctcctgtgtttttaggaCCCCAAGACTCATGGAAAGTCTCTCCTGCCTCCCAGGGAAACCCTTCAAAGGAAAAAAgtaaacgcacctttccctaaccattaacccatttcatagttcagccccac Alignment from CESAR gaCCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAAC-CTCCAAAGGAAAAAG acattgtcaaggctcttaatgcctagaacctgtgcctcctgtgtttttaggaCCCCAAGACTCATGGAAAGTCTCTCCTGCCTCCCAGGGAAACCCTTCAAAGGAAAAAAgtaaacgcacctttccctaaccattaacccatttcatagttcagccccac Alignment from Spaln_aa2Genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAAC-CTCCAAAGGAAAAAG acattgtcaaggctcttaatgcctagaacctgtgcctcctgtgtttttagGACCCCAAGACTCATGGAAAGTCTCTCCTGCCTCCCAGGGAAACcCTTCAAAGGAAAAAAgtaaacgcacctttccctaaccattaacccatttcatagttcagccccac Alignment from Spaln_nt2Genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACC-TCCAAAGGAAAAAG acattgtcaaggctcttaatgcctagaacctgtgcctcctgtgtttttagGACCCCAAGACTCATGGAAAGTCTCTCCTGCCTCCCAGGGAAACCCTTCAAAGGAAAAAAgtaaacgcacctttccctaaccattaacccatttcatagttcagccccac Alignment from Pairagon GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAA-CCTCCAAAGGAAAAAG acattgtcaaggctcttaatgcctagaacctgtgcctcctgtgtttttagGACCCCAAGACTCATGGAAAGTCTCTCCTGCCTCCCAGGGAAACCCTTCAAAGGAAAAAAgtaaacgcacctttccctaaccattaacccatttcatagttcagccccac Alignment from Exonerate_protein2genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAAC-CTCCAAAGGAAAAAG acattgtcaaggctcttaatgcctagaacctgtgcctcctgtgtttttagGACCCCAAGACTCATGGAAAGTCTCTCCTGCCTCCCAGGGAAACCCTTCAAAGGAAAAAAgtaaacgcacctttccctaaccattaacccatttcatagttcagccccac Alignment from Exonerate_coding2genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAAC-CTCCAAAGGAAAAAG acattgtcaaggctcttaatgcctagaacctgtgcctcctgtgtttttagGACCCCAAGACTCATGGAAAGTCTCTCCTGCCTCCCAGGGAAACCCTTCAAAGGAAAAAAgtaaacgcacctttccctaaccattaacccatttcatagttcagccccac Alignment from GeneWise GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAAC-CTCCAAAGGAAAAAG acattgtcaaggctcttaatgcctagaacctgtgcctcctgtgtttttagGACCCCAAGACTCATGGAAAGTCTCTCCTGCCTCCCAGGGAAACCCTTCAAAGGAAAAAAgtaaacgcacctttccctaaccattaacccatttcatagttcagccccac #### Sec31b_ID9037_15 --> 0 - 1 Original Alignment CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTG-GCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTg tgagtgtgctgtacatcagcctgagggttgagttttgtcttcaattgcagCTCCTAGCCTGTGTTGTAAAAAAGAATTGGAAGGACCTTGTGTGTGCCTGTCGACTG---AACTGGAGAGAGGCACTGCGCCTTGCTACTAACGTATTCGGGGCCAGAGAAGTTCCCTGAACTTTGTggtaagtgtgacctcaatgtgaaccaacatactggtgccaagtggagacag Alignment from CESAR CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTG-GCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTg tgagtgtgctgtacatcagcctgagggttgagttttgtcttcaattgcagCTCCTAGCCTGTGTTGTAAAAAAGAATTGGAAGGACCTTGTGTGTGCCTGTCGACTG---AACTGGAGAGAGGCACTGCGCCTTGCTACTAACGTATTCGGGGCCAGAGAAGTTCCCTGAACTTTGTggtaagtgtgacctcaatgtgaaccaacatactggtgccaagtggagacag Alignment from Spaln_aa2Genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTG-GCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG tgagtgtgctgtacatcagcctgagggttgagttttgtcttcaattgcagCTCCTAGCCTGTGTTGTAAAAAAGAATTGGAAGGACCTTGTGTGTGCCTGTCGACTG---AACTGGAGAGAGGCACTGcGCCTTGCTACTAACGTATTCGGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaagtgtgacctcaatgtgaaccaacatactggtgccaagtggagacag Alignment from Spaln_nt2Genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTG-GCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG tgagtgtgctgtacatcagcctgagggttgagttttgtcttcaattgcagCTCCTAGCCTGTGTTGTAAAAAAGAATTGGAAGGACCTTGTGTGTGCCTGTCGACT---GAACTGGAGAGAGGCACTGCGCCTTGCTACTAACGTATTCGGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaagtgtgacctcaatgtgaaccaacatactggtgccaagtggagacag Alignment from Pairagon CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTG-GCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG tgagtgtgctgtacatcagcctgagggttgagttttgtcttcaattgcagCTCCTAGCCTGTGTTGTAAAAAAGAATTGGAAGGACCTTGTGTGTGCCTGTCGACT---GAACTGGAGAGAGGCACTGCGCCTTGCTACTAACGTATTCGGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaagtgtgacctcaatgtgaaccaacatactggtgccaagtggagacag Alignment from Exonerate_protein2genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTG-GCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG tgagtgtgctgtacatcagcctgagggttgagttttgtcttcaattgcagCTCCTAGCCTGTGTTGTAAAAAAGAATTGGAAGGACCTTGTGTGTGCCTGTCGACTG---AACTGGAGAGAGGCACTGCGCCTTGCTACTAACGTATTCGGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaagtgtgacctcaatgtgaaccaacatactggtgccaagtggagacag Alignment from Exonerate_coding2genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTG-GCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG tgagtgtgctgtacatcagcctgagggttgagttttgtcttcaattgcagCTCCTAGCCTGTGTTGTAAAAAAGAATTGGAAGGACCTTGTGTGTGCCTGTCGACTG---AACTGGAGAGAGGCACTGCGCCTTGCTACTAACGTATTCGGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaagtgtgacctcaatgtgaaccaacatactggtgccaagtggagacag Alignment from GeneWise CTTCTAGCCTGTGTTGTAAAGAAGAATTGGAAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTG-GCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG tgagtgtgctgtacatcagcctgagggttgagttttgtcttcaattgcagCTCCTAGCCTGTGTTGTAAAAAAGAATTGGAAGGACCTTGTGTGTGCCTGTCGACTG---AACTGGAGAGAGGCACTGCGCCTTGCTACTAACGTATTCGGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaagtgtgacctcaatgtgaaccaacatactggtgccaagtggagacag #### Sec31b_ID9039_13 --> 0 - 1 Original Alignment GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAAC-ATGACTCCCTGGGAGATCCCCACCACAGAAg tctggcttcagttagcatacagtcacaccatttgcttcctttcctctaagGCCTCCAAACACACTGCCAAGGAAACCTCTGAGTCCTCAGCTTTCTTTGATGAGCTAATACCTCAGAACCATGACCCCCTGGGTGATCCCCACTACAGAAggtgagatgatcctgggaaagaggatataactgtataggggtaattgggaa Alignment from CESAR GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAAC-ATGACTCCCTGGGAGATCCCCACCACAGAAg tctggcttcagttagcatacagtcacaccatttgcttcctttcctctaagGCCTCCAAACACACTGCCAAGGAAACCTCTGAGTCCTCAGCTTTCTTTGATGAGCTAATACCTCAGAACCATGACCCCCTGGGTGATCCCCACTACAGAAggtgagatgatcctgggaaagaggatataactgtataggggtaattgggaa Alignment from Spaln_aa2Genome GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAAC-ATGACTCCCTGGGAGATCCCCACCACAGAAG tctggcttcagttagcatacagtcacaccatttgcttcctttcctctaagGCCTCCAAACACACTGCCAAGGAAACCTCTGAGTCCTCAGCTTTCTTTGATGAGCTAATACCTCAGAACcATGACCCCCTGGGTGATCCCCACTACAGAAGgtgagatgatcctgggaaagaggatataactgtataggggtaattgggaa Alignment from Spaln_nt2Genome GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAA-CATGACTCCCTGGGAGATCCCCACCACAGAAG tctggcttcagttagcatacagtcacaccatttgcttcctttcctctaagGCCTCCAAACACACTGCCAAGGAAACCTCTGAGTCCTCAGCTTTCTTTGATGAGCTAATACCTCAGAACCATGACCCCCTGGGTGATCCCCACTACAGAAGgtgagatgatcctgggaaagaggatataactgtataggggtaattgggaa Alignment from Pairagon GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAA-CATGACTCCCTGGGAGATCCCCACCACAGAAG tctggcttcagttagcatacagtcacaccatttgcttcctttcctctaagGCCTCCAAACACACTGCCAAGGAAACCTCTGAGTCCTCAGCTTTCTTTGATGAGCTAATACCTCAGAACCATGACCCCCTGGGTGATCCCCACTACAGAAGgtgagatgatcctgggaaagaggatataactgtataggggtaattgggaa Alignment from Exonerate_protein2genome GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAAC-ATGACTCCCTGGGAGATCCCCACCACAGAAG tctggcttcagttagcatacagtcacaccatttgcttcctttcctctaagGCCTCCAAACACACTGCCAAGGAAACCTCTGAGTCCTCAGCTTTCTTTGATGAGCTAATACCTCAGAACCATGACCCCCTGGGTGATCCCCACTACAGAAGgtgagatgatcctgggaaagaggatataactgtataggggtaattgggaa Alignment from Exonerate_coding2genome GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAAC-ATGACTCCCTGGGAGATCCCCACCACAGAAG tctggcttcagttagcatacagtcacaccatttgcttcctttcctctaagGCCTCCAAACACACTGCCAAGGAAACCTCTGAGTCCTCAGCTTTCTTTGATGAGCTAATACCTCAGAACCATGACCCCCTGGGTGATCCCCACTACAGAAGgtgagatgatcctgggaaagaggatataactgtataggggtaattgggaa Alignment from GeneWise GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAAC-ATGACTCCCTGGGAGATCCCCACCACAGAAG tctggcttcagttagcatacagtcacaccatttgcttcctttcctctaagGCCTCCAAACACACTGCCAAGGAAACCTCTGAGTCCTCAGCTTTCTTTGATGAGCTAATACCTCAGAACCATGACCCCCTGGGTGATCCCCACTACAGAAGgtgagatgatcctgggaaagaggatataactgtataggggtaattgggaa #### Sec31b_ID9040_12 --> 0 - 0 Original Alignment GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAA-AGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgggacacttgtgcagacccagctggacctcatgcttgtcaccttccagGTGGACACTTGCCTAAAGAGTGACTCAAAATCACAGGAACAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCTCACAGCCCTTGTGCTCAGgtagttttggagtctggtggaaactgactcctgggagtcaagagacatat Alignment from CESAR GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAA-AGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgggacacttgtgcagacccagctggacctcatgcttgtcaccttccagGTGGACACTTGCCTAAAGAGTGACTCAAAATCACAGGAACAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCTCACAGCCCTTGTGCTCAGgtagttttggagtctggtggaaactgactcctgggagtcaagagacatat Alignment from Spaln_aa2Genome GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAA-AGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgggacacttgtgcagacccagctggacctcatgcttgtcaccttccagGTGGACACTTGCCTAAAGAGTGACTCAAAATCACAGGAAcAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCTCACAGCCCTTGTGCTCAGgtagttttggagtctggtggaaactgactcctgggagtcaagagacatat Alignment from Spaln_nt2Genome GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAA-AGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgggacacttgtgcagacccagctggacctcatgcttgtcaccttccagGTGGACACTTGCCTAAAGAGTGACTCAAAATCACAGGAACAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCTCACAGCCCTTGTGCTCAGgtagttttggagtctggtggaaactgactcctgggagtcaagagacatat Alignment from Pairagon GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAA-AGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgggacacttgtgcagacccagctggacctcatgcttgtcaccttccagGTGGACACTTGCCTAAAGAGTGACTCAAAATCACAGGAACAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCTCACAGCCCTTGTGCTCAGgtagttttggagtctggtggaaactgactcctgggagtcaagagacatat Alignment from Exonerate_protein2genome GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAA-AGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgggacacttgtgcagacccagctggacctcatgcttgtcaccttccagGTGGACACTTGCCTAAAGAGTGACTCAAAATCACAGGAACAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCTCACAGCCCTTGTGCTCAGgtagttttggagtctggtggaaactgactcctgggagtcaagagacatat Alignment from Exonerate_coding2genome GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAA-AGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgggacacttgtgcagacccagctggacctcatgcttgtcaccttccagGTGGACACTTGCCTAAAGAGTGACTCAAAATCACAGGAACAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCTCACAGCCCTTGTGCTCAGgtagttttggagtctggtggaaactgactcctgggagtcaagagacatat Alignment from GeneWise GTGGACACTTGCCTGAAGAGTGACTCAAAATCACAGGAA-AGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCACACAGCCCTTGCGCCCAG atgggacacttgtgcagacccagctggacctcatgcttgtcaccttccagGTGGACACTTGCCTAAAGAGTGACTCAAAATCACAGGAACAGCCCTCAGCTTGAGGCGGTTGACCTCAAAAGTGACAGAGCTCACAGCCCTTGTGCTCAGgtagttttggagtctggtggaaactgactcctgggagtcaagagacatat #### Sema4g_ID9244_2 --> 2 - 0 Original Alignment agCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTG-CTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gcataatagaaagtattccccagctggcatcctgtgcgttttctttgcagagGTCTCACAGGTACGACACTTCAAGGGTCAGGCCCAAAACTATTCAACCCTGCTGCTTGGAGGAGGCTTCTGAAAGGCTGCTGGTGGGGGCTCGAGGTACCCTGTTCTCCCTCAGTGCACGTGAAATCAGAGAGAGGACGCATAAAGAGgtgagtcactgatgtttggtctcgcaggatctctagcttgatggggccag Alignment from CESAR agCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTG-CTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gcataatagaaagtattccccagctggcatcctgtgcgttttctttgcagagGTCTCACAGGTACGACACTTCAAGGGTCAGGCCCAAAACTATTCAACCCTGCTGCTTGGAGGAGGCTTCTGAAAGGCTGCTGGTGGGGGCTCGAGGTACCCTGTTCTCCCTCAGTGCACGTGAAATCAGAGAGAGGACGCATAAAGAGgtgagtcactgatgtttggtctcgcaggatctctagcttgatggggccag Alignment from Spaln_aa2Genome AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTG-CTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gcataatagaaagtattccccagctggcatcctgtgcgttttctttgcagAGGTCTCACAGGTACGACACTTCAAGGGTCAGGCCCAAAACTATTCAACCCTGCTGcTTGGAGGAGGCTTCTGAAAGGCTGCTGGTGGGGGCTCGAGGTACCCTGTTCTCCCTCAGTGCACGTGAAATCAGAGAGAGGACGCATAAAGAGgtgagtcactgatgtttggtctcgcaggatctctagcttgatggggccag Alignment from Spaln_nt2Genome AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCT-GGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gcataatagaaagtattccccagctggcatcctgtgcgttttctttgcagAGGTCTCACAGGTACGACACTTCAAGGGTCAGGCCCAAAACTATTCAACCCTGCTGCTTGGAGGAGGCTTCTGAAAGGCTGCTGGTGGGGGCTCGAGGTACCCTGTTCTCCCTCAGTGCACGTGAAATCAGAGAGAGGACGCATAAAGAGgtgagtcactgatgtttggtctcgcaggatctctagcttgatggggccag Alignment from Pairagon AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGC-TGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gcataatagaaagtattccccagctggcatcctgtgcgttttctttgcagAGGTCTCACAGGTACGACACTTCAAGGGTCAGGCCCAAAACTATTCAACCCTGCTGCTTGGAGGAGGCTTCTGAAAGGCTGCTGGTGGGGGCTCGAGGTACCCTGTTCTCCCTCAGTGCACGTGAAATCAGAGAGAGGACGCATAAAGAGgtgagtcactgatgtttggtctcgcaggatctctagcttgatggggccag Alignment from Exonerate_protein2genome AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTG-CTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gcataatagaaagtattccccagctggcatcctgtgcgttttctttgcagAGGTCTCACAGGTACGACACTTCAAGGGTCAGGCCCAAAACTATTCAACCCTGCTGCTTGGAGGAGGCTTCTGAAAGGCTGCTGGTGGGGGCTCGAGGTACCCTGTTCTCCCTCAGTGCACGTGAAATCAGAGAGAGGACGCATAAAGAGgtgagtcactgatgtttggtctcgcaggatctctagcttgatggggccag Alignment from Exonerate_coding2genome AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTG-CTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gcataatagaaagtattccccagctggcatcctgtgcgttttctttgcagAGGTCTCACAGGTACGACACTTCAAGGGTCAGGCCCAAAACTATTCAACCCTGCTGCTTGGAGGAGGCTTCTGAAAGGCTGCTGGTGGGGGCTCGAGGTACCCTGTTCTCCCTCAGTGCACGTGAAATCAGAGAGAGGACGCATAAAGAGgtgagtcactgatgtttggtctcgcaggatctctagcttgatggggccag Alignment from GeneWise AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTG-CTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gcataatagaaagtattccccagctggcatcctgtgcgttttctttgcagAGGTCTCACAGGTACGACACTTCAAGGGTCAGGCCCAAAACTATTCAACCCTGCTGCTTGGAGGAGGCTTCTGAAAGGCTGCTGGTGGGGGCTCGAGGTACCCTGTTCTCCCTCAGTGCACGTGAAATCAGAGAGAGGACGCATAAAGAGgtgagtcactgatgtttggtctcgcaggatctctagcttgatggggccag #### Sema4g_ID9247_5 --> 0 - 1 Original Alignment GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAA-TGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTg acagccttgccggccctctgtaccattagttgttgtttgtccacctccagGATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAAGAGGAACTGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTggtaaagacagtgtaaccaggcccccagtcccacaattctgtgatctgaat Alignment from CESAR GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAA-TGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTg acagccttgccggccctctgtaccattagttgttgtttgtccacctccagGATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAAGAGGAACTGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTggtaaagacagtgtaaccaggcccccagtcccacaattctgtgatctgaat Alignment from Spaln_aa2Genome GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAG-AAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG acagccttgccggccctctgtaccattagttgttgtttgtccacctccagGATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAAGAGgAACTGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTGgtaaagacagtgtaaccaggcccccagtcccacaattctgtgatctgaat Alignment from Spaln_nt2Genome GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGA-GAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG acagccttgccggccctctgtaccattagttgttgtttgtccacctccagGATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAAGAGGAACTGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTGgtaaagacagtgtaaccaggcccccagtcccacaattctgtgatctgaat Alignment from Pairagon GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAA-TGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG acagccttgccggccctctgtaccattagttgttgtttgtccacctccagGATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAAGAGGAACTGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTGgtaaagacagtgtaaccaggcccccagtcccacaattctgtgatctgaat Alignment from Exonerate_protein2genome GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAA-TGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG acagccttgccggccctctgtaccattagttgttgtttgtccacctccagGATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAAGAGGAACTGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTGgtaaagacagtgtaaccaggcccccagtcccacaattctgtgatctgaat Alignment from Exonerate_coding2genome GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAA-TGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG acagccttgccggccctctgtaccattagttgttgtttgtccacctccagGATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAAGAGGAACTGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTGgtaaagacagtgtaaccaggcccccagtcccacaattctgtgatctgaat Alignment from GeneWise GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAG-AAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG acagccttgccggccctctgtaccattagttgttgtttgtccacctccagGATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAAGAGGAACTGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTGgtaaagacagtgtaaccaggcccccagtcccacaattctgtgatctgaat #### Sema4g_ID9248_6 --> 2 - 1 Original Alignment atGGAGGCCTCTACACAGCCACC-CGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATg ttttcctgatagcacatgccctatatctttgtcttgcttttctgtgccagatGGCGGCCTCTATACAGCCACCCCGGTATGAATTCCGGAGCATTCCTGATATTCGCCGGAGCCGTCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATggtgagtatagggtgcttaggaggggttgggggagggggcagctcatttct Alignment from CESAR atGGAGGCCTCTACACAGCCACC-CGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATg ttttcctgatagcacatgccctatatctttgtcttgcttttctgtgccagatGGCGGCCTCTATACAGCCACCCCGGTATGAATTCCGGAGCATTCCTGATATTCGCCGGAGCCGTCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATggtgagtatagggtgcttaggaggggttgggggagggggcagctcatttct Alignment from Spaln_aa2Genome ATGGAGGCCTCTACACAGCCACC-CGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctgatagcacatgccctatatctttgtcttgcttttctgtgccagATGGCGGCCTCTATACAGCCACCcCGGTATGAATTCCGGAGCATTCCTGATATTCGCCGGAGCCGTCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATGgtgagtatagggtgcttaggaggggttgggggagggggcagctcatttct Alignment from Spaln_nt2Genome ATGGAGGCCTCTACACAGCCA-CCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctgatagcacatgccctatatctttgtcttgcttttctgtgccagATGGCGGCCTCTATACAGCCACCCCGGTATGAATTCCGGAGCATTCCTGATATTCGCCGGAGCCGTCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATGgtgagtatagggtgcttaggaggggttgggggagggggcagctcatttct Alignment from Pairagon ATGGAGGCCTCTACACAGCCA-CCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctgatagcacatgccctatatctttgtcttgcttttctgtgccagATGGCGGCCTCTATACAGCCACCCCGGTATGAATTCCGGAGCATTCCTGATATTCGCCGGAGCCGTCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATGgtgagtatagggtgcttaggaggggttgggggagggggcagctcatttct Alignment from Exonerate_protein2genome ATGGAGGCCTCTACACAGCCACC-CGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctgatagcacatgccctatatctttgtcttgcttttctgtgccagATGGCGGCCTCTATACAGCCACCCCGGTATGAATTCCGGAGCATTCCTGATATTCGCCGGAGCCGTCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATGgtgagtatagggtgcttaggaggggttgggggagggggcagctcatttct Alignment from Exonerate_coding2genome ATGGAGGCCTCTACACAGCCACC-CGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctgatagcacatgccctatatctttgtcttgcttttctgtgccagATGGCGGCCTCTATACAGCCACCCCGGTATGAATTCCGGAGCATTCCTGATATTCGCCGGAGCCGTCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATGgtgagtatagggtgcttaggaggggttgggggagggggcagctcatttct Alignment from GeneWise GCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctgatagcacatgccctatatctttgtcttgcttttctgtgccagatggcggcctctatacagCCACCCCGGTATGAATTCCGGAGCATTCCTGATATTCGCCGGAGCCGTCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATGgtgagtatagggtgcttaggaggggttgggggagggggcagctcatttct #### Sema4g_ID9249_7 --> 2 - 0 Original Alignment atGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTAT-TTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG gagtgcttgacctgtttcataagtcagctaccccggccgcccgggtctagatGCAGAGTTTGTGTTCTCTGTGCTGGTACGAGAGAGCAAGACAAGCACTGTGGGTGGTGATGACAGGATTTATCTTCTTCTTCAAGGAGCGTGAGGAAGGCTCCAGCAGTTTCACACAGAGTTGCAGCAGCCACCGTGTAGCTAGAGCACCCCGAGTCTGCAAGgtaagactgatgcacttagagtatggggaaaagcaaaggccagacctctg Alignment from CESAR atGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTAT-TTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG gagtgcttgacctgtttcataagtcagctaccccggccgcccgggtctagatGCAGAGTTTGTGTTCTCTGTGCTGGTACGAGAGAGCAAGACAAGCACTGTGGGTGGTGATGACAGGATTTATCTTCTTCTTCAAGGAGCGTGAGGAAGGCTCCAGCAGTTTCACACAGAGTTGCAGCAGCCACCGTGTAGCTAGAGCACCCCGAGTCTGCAAGgtaagactgatgcacttagagtatggggaaaagcaaaggccagacctctg Alignment from Spaln_aa2Genome ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTAT-TTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG gagtgcttgacctgtttcataagtcagctaccccggccgcccgggtctagATGCAGAGTTTGTGTTCTCTGTGCTGGTACGAGAGAGCAAGACAAGCACTGTGGGTGGTGATGACAGGATTTATcTTCTTCTTCAAGGAGCGTGAGGAAGGCTCCAGCAGTTTCACACAGAGTTGCAGCAGCCACCGTGTAGCTAGAGCACCCCGAGTCTGCAAGgtaagactgatgcacttagagtatggggaaaagcaaaggccagacctctg Alignment from Spaln_nt2Genome ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTAT-TTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG gagtgcttgacctgtttcataagtcagctaccccggccgcccgggtctagATGCAGAGTTTGTGTTCTCTGTGCTGGTACGAGAGAGCAAGACAAGCACTGTGGGTGGTGATGACAGGATTTATCTTCTTCTTCAAGGAGCGTGAGGAAGGCTCCAGCAGTTTCACACAGAGTTGCAGCAGCCACCGTGTAGCTAGAGCACCCCGAGTCTGCAAGgtaagactgatgcacttagagtatggggaaaagcaaaggccagacctctg Alignment from Pairagon ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTAT-TTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG gagtgcttgacctgtttcataagtcagctaccccggccgcccgggtctagATGCAGAGTTTGTGTTCTCTGTGCTGGTACGAGAGAGCAAGACAAGCACTGTGGGTGGTGATGACAGGATTTATCTTCTTCTTCAAGGAGCGTGAGGAAGGCTCCAGCAGTTTCACACAGAGTTGCAGCAGCCACCGTGTAGCTAGAGCACCCCGAGTCTGCAAGgtaagactgatgcacttagagtatggggaaaagcaaaggccagacctctg Alignment from Exonerate_protein2genome ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTAT-TTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG gagtgcttgacctgtttcataagtcagctaccccggccgcccgggtctagATGCAGAGTTTGTGTTCTCTGTGCTGGTACGAGAGAGCAAGACAAGCACTGTGGGTGGTGATGACAGGATTTATCTTCTTCTTCAAGGAGCGTGAGGAAGGCTCCAGCAGTTTCACACAGAGTTGCAGCAGCCACCGTGTAGCTAGAGCACCCCGAGTCTGCAAGgtaagactgatgcacttagagtatggggaaaagcaaaggccagacctctg Alignment from Exonerate_coding2genome ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTAT-TTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG gagtgcttgacctgtttcataagtcagctaccccggccgcccgggtctagATGCAGAGTTTGTGTTCTCTGTGCTGGTACGAGAGAGCAAGACAAGCACTGTGGGTGGTGATGACAGGATTTATCTTCTTCTTCAAGGAGCGTGAGGAAGGCTCCAGCAGTTTCACACAGAGTTGCAGCAGCCACCGTGTAGCTAGAGCACCCCGAGTCTGCAAGgtaagactgatgcacttagagtatggggaaaagcaaaggccagacctctg Alignment from GeneWise ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTAT-TTCTTCTTCATGGAGCGTGAGGAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG gagtgcttgacctgtttcataagtcagctaccccggccgcccgggtctagATGCAGAGTTTGTGTTCTCTGTGCTGGTACGAGAGAGCAAGACAAGCACTGTGGGTGGTGATGACAGGATTTATCTTCTTCTTCAAGGAGCGTGAGGAAGGCTCCAGCAGTTTCACACAGAGTTGCAGCAGCCACCGTGTAGCTAGAGCACCCCGAGTCTGCAAGgtaagactgatgcacttagagtatggggaaaagcaaaggccagacctctg #### Sema4g_ID9250_8 --> 0 - 2 Original Alignment GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTC-ATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGtg aaaagcaaaggccagacctctgaactgattaggtgttctttcttcttcagGGAGATCTGGGTGGGGAAAAGATCCTGCAGAAGAAGTGGAAATCCTTCCTGAAGGCTCGACTCCATCTGCCATGTCCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTGAATGCTGACACATCATCCCACACGCATTTCTATGCCGTCTTTATGCTGACAACCCAGtggtacatataggagacatgagcacagatgttgggcaaagggaaaggaacag Alignment from CESAR GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTC-ATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGtg aaaagcaaaggccagacctctgaactgattaggtgttctttcttcttcagGGAGATCTGGGTGGGGAAAAGATCCTGCAGAAGAAGTGGAAATCCTTCCTGAAGGCTCGACTCCATCTGCCATGTCCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTGAATGCTGACACATCATCCCACACGCATTTCTATGCCGTCTTTATGCTGACAACCCAGtggtacatataggagacatgagcacagatgttgggcaaagggaaaggaacag Alignment from Spaln_aa2Genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTC-ATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aaaagcaaaggccagacctctgaactgattaggtgttctttcttcttcagGGAGATCTGGGTGGGGAAAAGATCCTGCAGAAGAAGTGGAAATCCTTCCTGAAGGCTCGACTCcATCTGCCATGTCCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTGAATGCTGACACATCATCCCACACGCATTTCTATGCCGTCTTTATGCTGACAACCCAGTGgtacatataggagacatgagcacagatgttgggcaaagggaaaggaacag Alignment from Spaln_nt2Genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCT-CATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aaaagcaaaggccagacctctgaactgattaggtgttctttcttcttcagGGAGATCTGGGTGGGGAAAAGATCCTGCAGAAGAAGTGGAAATCCTTCCTGAAGGCTCGACTCCATCTGCCATGTCCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTGAATGCTGACACATCATCCCACACGCATTTCTATGCCGTCTTTATGCTGACAACCCAGTGgtacatataggagacatgagcacagatgttgggcaaagggaaaggaacag Alignment from Pairagon GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCT-CATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aaaagcaaaggccagacctctgaactgattaggtgttctttcttcttcagGGAGATCTGGGTGGGGAAAAGATCCTGCAGAAGAAGTGGAAATCCTTCCTGAAGGCTCGACTCCATCTGCCATGTCCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTGAATGCTGACACATCATCCCACACGCATTTCTATGCCGTCTTTATGCTGACAACCCAGTGgtacatataggagacatgagcacagatgttgggcaaagggaaaggaacag Alignment from Exonerate_protein2genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTC-ATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aaaagcaaaggccagacctctgaactgattaggtgttctttcttcttcagGGAGATCTGGGTGGGGAAAAGATCCTGCAGAAGAAGTGGAAATCCTTCCTGAAGGCTCGACTCCATCTGCCATGTCCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTGAATGCTGACACATCATCCCACACGCATTTCTATGCCGTCTTTATGCTGACAACCCAGTGgtacatataggagacatgagcacagatgttgggcaaagggaaaggaacag Alignment from Exonerate_coding2genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTC-ATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aaaagcaaaggccagacctctgaactgattaggtgttctttcttcttcagGGAGATCTGGGTGGGGAAAAGATCCTGCAGAAGAAGTGGAAATCCTTCCTGAAGGCTCGACTCCATCTGCCATGTCCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTGAATGCTGACACATCATCCCACACGCATTTCTATGCCGTCTTTATGCTGACAACCCAGTGgtacatataggagacatgagcacagatgttgggcaaagggaaaggaacag Alignment from GeneWise GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGT-CTCATCTGCCACATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aaaagcaaaggccagacctctgaactgattaggtgttctttcttcttcagGGAGATCTGGGTGGGGAAAAGATCCTGCAGAAGAAGTGGAAATCCTTCCTGAAGGCTCGACTCCATCTGCCATGTCCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTGAATGCTGACACATCATCCCACACGCATTTCTATGCCGTCTTTATGCTGACAACCCAGTGgtacatataggagacatgagcacagatgttgggcaaagggaaaggaacag #### Sema4g_ID9251_9 --> 1 - 0 Original Alignment gAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGG-GGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggcctggagcaggcggcattcaatcttttctctttcttgaccctcaggAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAAGATGGTGCCCGGTGTTGGCGGCCGCTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTTGgtaggtactcaggtctggaccttacattaattggacaaagggtaggtaag Alignment from CESAR gAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGG-GGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggcctggagcaggcggcattcaatcttttctctttcttgaccctcaggAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAAGATGGTGCCCGGTGTTGGCGGCCGCTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTTGgtaggtactcaggtctggaccttacattaattggacaaagggtaggtaag Alignment from Spaln_aa2Genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGG-GGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggcctggagcaggcggcattcaatcttttctctttcttgaccctcagGAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAAGATGGTGCCCGGTGTTGGcGGCCGCTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTTGgtaggtactcaggtctggaccttacattaattggacaaagggtaggtaag Alignment from Spaln_nt2Genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGG-GGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggcctggagcaggcggcattcaatcttttctctttcttgaccctcagGAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAAGATGGTGCCCGGTGTTGGCGGCCGCTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTTGgtaggtactcaggtctggaccttacattaattggacaaagggtaggtaag Alignment from Pairagon GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGG-GGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggcctggagcaggcggcattcaatcttttctctttcttgaccctcagGAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAAGATGGTGCCCGGTGTTGGCGGCCGCTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTTGgtaggtactcaggtctggaccttacattaattggacaaagggtaggtaag Alignment from Exonerate_protein2genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGG-GGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggcctggagcaggcggcattcaatcttttctctttcttgaccctcagGAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAAGATGGTGCCCGGTGTTGGCGGCCGCTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTTGgtaggtactcaggtctggaccttacattaattggacaaagggtaggtaag Alignment from Exonerate_coding2genome GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGG-GGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggcctggagcaggcggcattcaatcttttctctttcttgaccctcagGAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAAGATGGTGCCCGGTGTTGGCGGCCGCTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTTGgtaggtactcaggtctggaccttacattaattggacaaagggtaggtaag Alignment from GeneWise GAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGG-GGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG acaggcctggagcaggcggcattcaatcttttctctttcttgaccctcagGAAGACATTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAAGATGGTGCCCGGTGTTGGCGGCCGCTATGAGGGTGGAGTGCATCAACCCCGACCTGGCTTGgtaggtactcaggtctggaccttacattaattggacaaagggtaggtaag #### Sema4g_ID9252_10 --> 0 - 1 Original Alignment TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCT-GTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAg gtcaggtggaagtccggctgcagagtctacctactttatgtaatctccagTGTATCACTGATTCTTTGCGCAGCCAAGGGTACAACTCATCCCAAGACTTGCCATCCCTTGTCCTTGACTTTGTGAAGCTGCATCCACTGATGGCTCAGCCTCGTGGTGCCCACACGTGGGCAGCCCTTGCTGCTGAAGCGCAATGTACGTTACACACATGTCACAGGTACACATGTGAGTACACCTGCTGGACCTACCTATGAGCTGCTCTTTCTAGGCACAggtcagtcagactccctcctgatacactggcctccacatcagctagaatac Alignment from CESAR TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCT-GTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAg gtcaggtggaagtccggctgcagagtctacctactttatgtaatctccagTGTATCACTGATTCTTTGCGCAGCCAAGGGTACAACTCATCCCAAGACTTGCCATCCCTTGTCCTTGACTTTGTGAAGCTGCATCCACTGATGGCTCAGCCTCGTGGTGCCCACACGTGGGCAGCCCTTGCTGCTGAAGCGCAATGTACGTTACACACATGTCACAGGTACACATGTGAGTACACCTGCTGGACCTACCTATGAGCTGCTCTTTCTAGGCACAggtcagtcagactccctcctgatacactggcctccacatcagctagaatac Alignment from Spaln_aa2Genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCT-GTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG gtcaggtggaagtccggctgcagagtctacctactttatgtaatctccagTGTATCACTGATTCTTTGCGCAGCCAAGGGTACAACTCATCCCAAGACTTGCCATCCCTTGTCCTTGACTTTGTGAAGCTGCATCCACTGATGGCTCAGCCTcGTGGTGCCCACACGTGGGCAGCCCTTGCTGCTGAAGCGCAATGTACGTTACACACATGTCACAGGTACACATGTGAGTACACCTGCTGGACCTACCTATGAGCTGCTCTTTCTAGGCACAGgtcagtcagactccctcctgatacactggcctccacatcagctagaatac Alignment from Spaln_nt2Genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCT-GTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG gtcaggtggaagtccggctgcagagtctacctactttatgtaatctccagTGTATCACTGATTCTTTGCGCAGCCAAGGGTACAACTCATCCCAAGACTTGCCATCCCTTGTCCTTGACTTTGTGAAGCTGCATCCACTGATGGCTCAGCCTCGTGGTGCCCACACGTGGGCAGCCCTTGCTGCTGAAGCGCAATGTACGTTACACACATGTCACAGGTACACATGTGAGTACACCTGCTGGACCTACCTATGAGCTGCTCTTTCTAGGCACAGgtcagtcagactccctcctgatacactggcctccacatcagctagaatac Alignment from Pairagon TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCT-GTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG gtcaggtggaagtccggctgcagagtctacctactttatgtaatctccagTGTATCACTGATTCTTTGCGCAGCCAAGGGTACAACTCATCCCAAGACTTGCCATCCCTTGTCCTTGACTTTGTGAAGCTGCATCCACTGATGGCTCAGCCTCGTGGTGCCCACACGTGGGCAGCCCTTGCTGCTGAAGCGCAATGTACGTTACACACATGTCACAGGTACACATGTGAGTACACCTGCTGGACCTACCTATGAGCTGCTCTTTCTAGGCACAGgtcagtcagactccctcctgatacactggcctccacatcagctagaatac Alignment from Exonerate_protein2genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCT-GTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG gtcaggtggaagtccggctgcagagtctacctactttatgtaatctccagTGTATCACTGATTCTTTGCGCAGCCAAGGGTACAACTCATCCCAAGACTTGCCATCCCTTGTCCTTGACTTTGTGAAGCTGCATCCACTGATGGCTCAGCCTCGTGGTGCCCACACGTGGGCAGCCCTTGCTGCTGAAGCGCAATGTACGTTACACACATGTCACAGGTACACATGTGAGTACACCTGCTGGACCTACCTATGAGCTGCTCTTTCTAGGCACAGgtcagtcagactccctcctgatacactggcctccacatcagctagaatac Alignment from Exonerate_coding2genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCT-GTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG gtcaggtggaagtccggctgcagagtctacctactttatgtaatctccagTGTATCACTGATTCTTTGCGCAGCCAAGGGTACAACTCATCCCAAGACTTGCCATCCCTTGTCCTTGACTTTGTGAAGCTGCATCCACTGATGGCTCAGCCTCGTGGTGCCCACACGTGGGCAGCCCTTGCTGCTGAAGCGCAATGTACGTTACACACATGTCACAGGTACACATGTGAGTACACCTGCTGGACCTACCTATGAGCTGCTCTTTCTAGGCACAGgtcagtcagactccctcctgatacactggcctccacatcagctagaatac Alignment from GeneWise TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCCTGATGGCTCGGCCT-GTGGTGCCCACACGTGGGCGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG gtcaggtggaagtccggctgcagagtctacctactttatgtaatctccagTGTATCACTGATTCTTTGCGCAGCCAAGGGTACAACTCATCCCAAGACTTGCCATCCCTTGTCCTTGACTTTGTGAAGCTGCATCCACTGATGGCTCAGCCTCGTGGTGCCCACACGTGGGCAGCCCTTGCTGCTGAAGCGCAATGTACGTTACACACATGTCACAGGTACACATGTGAGTACACCTGCTGGACCTACCTATGAGCTGCTCTTTCTAGGCACAGgtcagtcagactccctcctgatacactggcctccacatcagctagaatac #### Sf1_ID1664_5 --> 1 - 2 Original Alignment gCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTT-GTGGGGCTCCTAATTGGACCCag aatgcatgtgaccttccaaagatagatgaataatatttctttcttaatagaCCTCCAGCAACACGTGTGAGTGATAAAGTGATGATACCACAATATGAATATCCAGAAATCAATTTTCGTGGGCCTTCTAATTGGACCCaggtaggaaattagtagtctatggcaccctgggtatccattgtagttgaagc Alignment from CESAR gCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTT-GTGGGGCTCCTAATTGGACCCag aatgcatgtgaccttccaaagatagatgaataatatttctttcttaatagaCCTCCAGCAACACGTGTGAGTGATAAAGTGATGATACCACAATATGAATATCCAGAAATCAATTTTCGTGGGCCTTCTAATTGGACCCaggtaggaaattagtagtctatggcaccctgggtatccattgtagttgaagc Alignment from Spaln_aa2Genome GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTT-GTGGGGCTCCTAATTGGACCCAG aatgcatgtgaccttccaaagatagatgaataatatttctttcttaatagACCTCCAGCAACACGTGTGAGTGATAAAGTGATGATACCACAATATGAATATCCAGAAATCAATTTTcGTGGGCCTTCTAATTGGACCCAGgtaggaaattagtagtctatggcaccctgggtatccattgtagttgaagc Alignment from Spaln_nt2Genome GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTT-GTGGGGCTCCTAATTGGACCCAG aatgcatgtgaccttccaaagatagatgaataatatttctttcttaatagACCTCCAGCAACACGTGTGAGTGATAAAGTGATGATACCACAATATGAATATCCAGAAATCAATTTTCGTGGGCCTTCTAATTGGACCCAGgtaggaaattagtagtctatggcaccctgggtatccattgtagttgaagc Alignment from Pairagon GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTT-GTGGGGCTCCTAATTGGACCCAG aatgcatgtgaccttccaaagatagatgaataatatttctttcttaatagACCTCCAGCAACACGTGTGAGTGATAAAGTGATGATACCACAATATGAATATCCAGAAATCAATTTTCGTGGGCCTTCTAATTGGACCCAGgtaggaaattagtagtctatggcaccctgggtatccattgtagttgaagc Alignment from Exonerate_protein2genome GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAAT-TTTGTGGGGCTCCTAATTGGACCCAG aatgcatgtgaccttccaaagatagatgaataatatttctttcttaatagACCTCCAGCAACACGTGTGAGTGATAAAGTGATGATACCACAATATGAATATCCAGAAATCAATTTTCGTGGGCCTTCTAATTGGACCCAGgtaggaaattagtagtctatggcaccctgggtatccattgtagttgaagc Alignment from Exonerate_coding2genome GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAAT-TTTGTGGGGCTCCTAATTGGACCCAG aatgcatgtgaccttccaaagatagatgaataatatttctttcttaatagACCTCCAGCAACACGTGTGAGTGATAAAGTGATGATACCACAATATGAATATCCAGAAATCAATTTTCGTGGGCCTTCTAATTGGACCCAGgtaggaaattagtagtctatggcaccctgggtatccattgtagttgaagc Alignment from GeneWise GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCAGAAATCAATTTT-GTGGGGCTCCTAATTGGACCCAG aatgcatgtgaccttccaaagatagatgaataatatttctttcttaatagACCTCCAGCAACACGTGTGAGTGATAAAGTGATGATACCACAATATGAATATCCAGAAATCAATTTTCGTGGGCCTTCTAATTGGACCCAGgtaggaaattagtagtctatggcaccctgggtatccattgtagttgaagc #### Sf1_ID1665_6 --> 1 - 0 Original Alignment aGGGAACACCCTGAAGAACATTGAGAAGGAATGCAACGCCAAGATCATGATT-CGGGGGAAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAG agtaatctgaagaggagtaattttgtcaaatgtgagctctttccttgcagaGGGAACACACTGAAGAACATTGAGAAGGACTGCAATGCCAAGATCATGATTCCGGGGGAAAGGATCTGTGAAAGAAGGGAAAGTAGGACGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAGgtaagtgctgagcccaggagacctgataaccaatatatggtaggtgagta Alignment from CESAR aGGGAACACCCTGAAGAACATTGAGAAGGAATGCAACGCCAAGATCATGATT-CGGGGGAAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAG agtaatctgaagaggagtaattttgtcaaatgtgagctctttccttgcagaGGGAACACACTGAAGAACATTGAGAAGGACTGCAATGCCAAGATCATGATTCCGGGGGAAAGGATCTGTGAAAGAAGGGAAAGTAGGACGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAGgtaagtgctgagcccaggagacctgataaccaatatatggtaggtgagta Alignment from Spaln_aa2Genome AGGGAACACCCTGAAGAACATTGAGAAGGAATGCAACGCCAAGATCATGATTCGGGGG-AAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAG agtaatctgaagaggagtaattttgtcaaatgtgagctctttccttgcagAGGGAACACACTGAAGAACATTGAGAAGGACTGCAATGCCAAGATCATGATTCCGGGGgAAAGGATCTGTGAAAGAAGGGAAAGTAGGACGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAGgtaagtgctgagcccaggagacctgataaccaatatatggtaggtgagta Alignment from Spaln_nt2Genome AGGGAACACCCTGAAGAACATTGAGAAGGAATGCAACGCCAAGATCATGATTCG-GGGGAAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAG agtaatctgaagaggagtaattttgtcaaatgtgagctctttccttgcagAGGGAACACACTGAAGAACATTGAGAAGGACTGCAATGCCAAGATCATGATTCCGGGGGAAAGGATCTGTGAAAGAAGGGAAAGTAGGACGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAGgtaagtgctgagcccaggagacctgataaccaatatatggtaggtgagta Alignment from Pairagon AGGGAACACCCTGAAGAACATTGAGAAGGAATGCAACGCCAAGATCATGATT-CGGGGGAAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAG agtaatctgaagaggagtaattttgtcaaatgtgagctctttccttgcagAGGGAACACACTGAAGAACATTGAGAAGGACTGCAATGCCAAGATCATGATTCCGGGGGAAAGGATCTGTGAAAGAAGGGAAAGTAGGACGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAGgtaagtgctgagcccaggagacctgataaccaatatatggtaggtgagta Alignment from Exonerate_protein2genome AGGGAACACCCTGAAGAACATTGAGAAGGAATGCAACGCCAAGATCATGATT-CGGGGGAAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAG agtaatctgaagaggagtaattttgtcaaatgtgagctctttccttgcagAGGGAACACACTGAAGAACATTGAGAAGGACTGCAATGCCAAGATCATGATTCCGGGGGAAAGGATCTGTGAAAGAAGGGAAAGTAGGACGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAGgtaagtgctgagcccaggagacctgataaccaatatatggtaggtgagta Alignment from Exonerate_coding2genome AGGGAACACCCTGAAGAACATTGAGAAGGAATGCAACGCCAAGATCATGATT-CGGGGGAAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAG agtaatctgaagaggagtaattttgtcaaatgtgagctctttccttgcagAGGGAACACACTGAAGAACATTGAGAAGGACTGCAATGCCAAGATCATGATTCCGGGGGAAAGGATCTGTGAAAGAAGGGAAAGTAGGACGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAGgtaagtgctgagcccaggagacctgataaccaatatatggtaggtgagta Alignment from GeneWise AGGGAACACCCTGAAGAACATTGAGAAGGAATGCAACGCCAAGATCATG-ATTCGGGGGAAAGGATCAGTGAAAGAAGGGAAAGTTGGGCGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAG agtaatctgaagaggagtaattttgtcaaatgtgagctctttccttgcagAGGGAACACACTGAAGAACATTGAGAAGGACTGCAATGCCAAGATCATGATTCCGGGGGAAAGGATCTGTGAAAGAAGGGAAAGTAGGACGTAAAGATGGTCAGATGTTGCCAGGCGAAGATGAGCCTCTTCATGCTCTAGTCACTGCCAATACGATGGAGAATGTCAAAAAGGCAGTAGAACAGgtaagtgctgagcccaggagacctgataaccaatatatggtaggtgagta #### Sf1_ID1669_10 --> 0 - 1 Original Alignment TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAAC-CCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGg gtctgttgatacaccagtggtggacattttgttttatttctttctctcagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGTCTGACAGGCGGGCATGGTGGGCACCCCATGCAGCACAACCCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGggtacagaaggtgaccaataacccatggggcttgggagcaggggtagggac Alignment from CESAR TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAAC-CCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGg gtctgttgatacaccagtggtggacattttgttttatttctttctctcagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGTCTGACAGGCGGGCATGGTGGGCACCCCATGCAGCACAACCCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGggtacagaaggtgaccaataacccatggggcttgggagcaggggtagggac Alignment from Spaln_aa2Genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCA-AATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gtctgttgatacaccagtggtggacattttgttttatttctttctctcagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGTCTGACAGGCGGGCATGGTGGGCACCCCATGCAGCACAACCCCaAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtacagaaggtgaccaataacccatggggcttgggagcaggggtagggac Alignment from Spaln_nt2Genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAA-CCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gtctgttgatacaccagtggtggacattttgttttatttctttctctcagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGTCTGACAGGCGGGCATGGTGGGCACCCCATGCAGCACAACCCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtacagaaggtgaccaataacccatggggcttgggagcaggggtagggac Alignment from Pairagon TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAA-CCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gtctgttgatacaccagtggtggacattttgttttatttctttctctcagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGTCTGACAGGCGGGCATGGTGGGCACCCCATGCAGCACAACCCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtacagaaggtgaccaataacccatggggcttgggagcaggggtagggac Alignment from Exonerate_protein2genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAAC-CCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gtctgttgatacaccagtggtggacattttgttttatttctttctctcagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGTCTGACAGGCGGGCATGGTGGGCACCCCATGCAGCACAACCCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtacagaaggtgaccaataacccatggggcttgggagcaggggtagggac Alignment from Exonerate_coding2genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAAC-CCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gtctgttgatacaccagtggtggacattttgttttatttctttctctcagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGTCTGACAGGCGGGCATGGTGGGCACCCCATGCAGCACAACCCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtacagaaggtgaccaataacccatggggcttgggagcaggggtagggac Alignment from GeneWise TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCA-AATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG gtctgttgatacaccagtggtggacattttgttttatttctttctctcagTCTCTCATGTCTACGACTCAGAGCCGCCCACCCTGGATGAATTCCGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCCAGTCTGACAGGCGGGCATGGTGGGCACCCCATGCAGCACAACCCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtacagaaggtgaccaataacccatggggcttgggagcaggggtagggac #### Sf1_ID1670_11 --> 2 - 1 Original Alignment atCAGTACCTGGGAAGTACG-CCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAg aggccagttcaaatgtcctactaatttccctgattttttttctctcccagatCAGTATCTGGGAAGTACACCCAGTGGCCTCTGGGGTCTATCGCCTGCATCAAGGAAAAggtaggtccacttactttcttgggatgtctgtctggactgggatcaaatgg Alignment from CESAR atCAGTACCTGGGAAGTACG-CCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAg aggccagttcaaatgtcctactaatttccctgattttttttctctcccagatCAGTATCTGGGAAGTACACCCAGTGGCCTCTGGGGTCTATCGCCTGCATCAAGGAAAAggtaggtccacttactttcttgggatgtctgtctggactgggatcaaatgg Alignment from Spaln_aa2Genome ATCAGTACCTGGGAAGTACG-CCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG aggccagttcaaatgtcctactaatttccctgattttttttctctcccagATCAGTATCTGGGAAGTACAcCCAGTGGCCTCTGGGGTCTATCGCCTGCATCAAGGAAAAGgtaggtccacttactttcttgggatgtctgtctggactgggatcaaatgg Alignment from Spaln_nt2Genome ATCAGTACCTGGGAAGTACGCCT-GTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG aggccagttcaaatgtcctactaatttccctgattttttttctctcccagATCAGTATCTGGGAAGTACACCCAGTGGCCTCTGGGGTCTATCGCCTGCATCAAGGAAAAGgtaggtccacttactttcttgggatgtctgtctggactgggatcaaatgg Alignment from Pairagon ATCAGTACCTGGGAAGTACGCCT-GTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG aggccagttcaaatgtcctactaatttccctgattttttttctctcccagATCAGTATCTGGGAAGTACACCCAGTGGCCTCTGGGGTCTATCGCCTGCATCAAGGAAAAGgtaggtccacttactttcttgggatgtctgtctggactgggatcaaatgg Alignment from Exonerate_protein2genome ATCAGTACCTGGGAAGTACG-CCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG aggccagttcaaatgtcctactaatttccctgattttttttctctcccagATCAGTATCTGGGAAGTACACCCAGTGGCCTCTGGGGTCTATCGCCTGCATCAAGGAAAAGgtaggtccacttactttcttgggatgtctgtctggactgggatcaaatgg Alignment from Exonerate_coding2genome ATCAGTACCTGGGAAGTACG-CCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG aggccagttcaaatgtcctactaatttccctgattttttttctctcccagATCAGTATCTGGGAAGTACACCCAGTGGCCTCTGGGGTCTATCGCCTGCATCAAGGAAAAGgtaggtccacttactttcttgggatgtctgtctggactgggatcaaatgg Alignment from GeneWise ATCAGTACCTGGGAAGTACGCCTGTGGGC-TCTGGGGTCTATCGCCTGCATCAAGGAAAAG aggccagttcaaatgtcctactaatttccctgattttttttctctcccagATCAGTATCTGGGAAGTACACCCAGTGGCCTCTGGGGTCTATCGCCTGCATCAAGGAAAAGgtaggtccacttactttcttgggatgtctgtctggactgggatcaaatgg #### Sf3b2_ID901_17 --> 0 - 2 Original Alignment ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAG-ACTGGCTTCATCACACCTGCAGACag actgccagattcagtaagtccctgtgaaaaccttcttctgttcactccagACCAAAACGGAAGAAGAGGAAATCGACCAAACCCCGTGGGGGGAACTGGAACCTTCTGATGAAGAATCCTCAGAGGAGGAGGAGGAGGAGGAGAGTGATGAAGACAAGCCAGATGAGCACTGGCTTCATCACACCTGCAGACaggtaagtacagaggctgttcccctagagttgcttgcctgcccatggctatt Alignment from CESAR ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAG-ACTGGCTTCATCACACCTGCAGACag actgccagattcagtaagtccctgtgaaaaccttcttctgttcactccagACCAAAACGGAAGAAGAGGAAATCGACCAAACCCCGTGGGGGGAACTGGAACCTTCTGATGAAGAATCCTCAGAGGAGGAGGAGGAGGAGGAGAGTGATGAAGACAAGCCAGATGAGCACTGGCTTCATCACACCTGCAGACaggtaagtacagaggctgttcccctagagttgcttgcctgcccatggctatt Alignment from Spaln_aa2Genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAG-ACTGGCTTCATCACACCTGCAGACAG actgccagattcagtaagtccctgtgaaaaccttcttctgttcactccagACCAAAACGGAAGAAGAGGAAATCGACCAAACCCCGTGGGGGGAACTGGAACCTTCTGATGAAGAATCCTCAGAGGAGGAGGAGGAGGAGGAGAGTGATGAAGACAAGCCAGATGAGcACTGGCTTCATCACACCTGCAGACAGgtaagtacagaggctgttcccctagagttgcttgcctgcccatggctatt Alignment from Spaln_nt2Genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAG-ACTGGCTTCATCACACCTGCAGACAG actgccagattcagtaagtccctgtgaaaaccttcttctgttcactccagACCAAAACGGAAGAAGAGGAAATCGACCAAACCCCGTGGGGGGAACTGGAACCTTCTGATGAAGAATCCTCAGAGGAGGAGGAGGAGGAGGAGAGTGATGAAGACAAGCCAGATGAGCACTGGCTTCATCACACCTGCAGACAGgtaagtacagaggctgttcccctagagttgcttgcctgcccatggctatt Alignment from Pairagon ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAG-ACTGGCTTCATCACACCTGCAGACAG actgccagattcagtaagtccctgtgaaaaccttcttctgttcactccagACCAAAACGGAAGAAGAGGAAATCGACCAAACCCCGTGGGGGGAACTGGAACCTTCTGATGAAGAATCCTCAGAGGAGGAGGAGGAGGAGGAGAGTGATGAAGACAAGCCAGATGAGCACTGGCTTCATCACACCTGCAGACAGgtaagtacagaggctgttcccctagagttgcttgcctgcccatggctatt Alignment from Exonerate_protein2genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAG-ACTGGCTTCATCACACCTGCAGACAG actgccagattcagtaagtccctgtgaaaaccttcttctgttcactccagACCAAAACGGAAGAAGAGGAAATCGACCAAACCCCGTGGGGGGAACTGGAACCTTCTGATGAAGAATCCTCAGAGGAGGAGGAGGAGGAGGAGAGTGATGAAGACAAGCCAGATGAGCACTGGCTTCATCACACCTGCAGACAGgtaagtacagaggctgttcccctagagttgcttgcctgcccatggctatt Alignment from Exonerate_coding2genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAG-ACTGGCTTCATCACACCTGCAGACAG actgccagattcagtaagtccctgtgaaaaccttcttctgttcactccagACCAAAACGGAAGAAGAGGAAATCGACCAAACCCCGTGGGGGGAACTGGAACCTTCTGATGAAGAATCCTCAGAGGAGGAGGAGGAGGAGGAGAGTGATGAAGACAAGCCAGATGAGCACTGGCTTCATCACACCTGCAGACAGgtaagtacagaggctgttcccctagagttgcttgcctgcccatggctatt Alignment from GeneWise ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAG-ACTGGCTTCATCACACCTGCAGACAG actgccagattcagtaagtccctgtgaaaaccttcttctgttcactccagACCAAAACGGAAGAAGAGGAAATCGACCAAACCCCGTGGGGGGAACTGGAACCTTCTGATGAAGAATCCTCAGAGGAGGAGGAGGAGGAGGAGAGTGATGAAGACAAGCCAGATGAGCACTGGCTTCATCACACCTGCAGACAGgtaagtacagaggctgttcccctagagttgcttgcctgcccatggctatt #### Sf3b2_ID904_14 --> 0 - 0 Original Alignment GGGAAGGAGTTT-GAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT cagtatgtccagaagtcctgataaagaacctcttgcccgggctctgacagGGGAAGGAGTTTCGAGACACGGCTGAAGGAGAAGAAACCTGGAGATTTATCGGATGAGCTAAGGATTTTCTTAGGAATGCCAGTAGGACCTgtaaacgcaggctgagtgcgtgggagcaccagacaggggggaaatgagta Alignment from CESAR GGGAAGGAGTTT-GAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT cagtatgtccagaagtcctgataaagaacctcttgcccgggctctgacagGGGAAGGAGTTTCGAGACACGGCTGAAGGAGAAGAAACCTGGAGATTTATCGGATGAGCTAAGGATTTTCTTAGGAATGCCAGTAGGACCTgtaaacgcaggctgagtgcgtgggagcaccagacaggggggaaatgagta Alignment from Spaln_aa2Genome GGGAAGGAGTTT-GAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT cagtatgtccagaagtcctgataaagaacctcttgcccgggctctgacagGGGAAGGAGTTTcGAGACACGGCTGAAGGAGAAGAAACCTGGAGATTTATCGGATGAGCTAAGGATTTTCTTAGGAATGCCAGTAGGACCTgtaaacgcaggctgagtgcgtgggagcaccagacaggggggaaatgagta Alignment from Spaln_nt2Genome GGGAAGGAGTTT-GAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT cagtatgtccagaagtcctgataaagaacctcttgcccgggctctgacagGGGAAGGAGTTTCGAGACACGGCTGAAGGAGAAGAAACCTGGAGATTTATCGGATGAGCTAAGGATTTTCTTAGGAATGCCAGTAGGACCTgtaaacgcaggctgagtgcgtgggagcaccagacaggggggaaatgagta Alignment from Pairagon GGGAAGGAGTTT-GAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT cagtatgtccagaagtcctgataaagaacctcttgcccgggctctgacagGGGAAGGAGTTTCGAGACACGGCTGAAGGAGAAGAAACCTGGAGATTTATCGGATGAGCTAAGGATTTTCTTAGGAATGCCAGTAGGACCTgtaaacgcaggctgagtgcgtgggagcaccagacaggggggaaatgagta Alignment from Exonerate_protein2genome GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT cagtatgtccagaagtcctgataaagaacctcttgcccgggctctgacaggGGAAGGAGTTTCGAGACACGGCTGAAGGAGAAGAAACCTGGAGATTTATCGGATGAGCTAAGGATTTTCTTAGGAATGCCAGTAGGACCTgtaaacgcaggctgagtgcgtgggagcaccagacaggggggaaatgagta Alignment from Exonerate_coding2genome GGGAAGGAGTTTGAGACACGGCTGAAGGAGAAGAAGCCTGGAGATTTATCTGATGAGCTAAGGATTTCCTTAGGAATGCCAGTAGGACCT cagtatgtccagaagtcctgataaagaacctcttgcccgggctctgacaggGGAAGGAGTTTCGAGACACGGCTGAAGGAGAAGAAACCTGGAGATTTATCGGATGAGCTAAGGATTTTCTTAGGAATGCCAGTAGGACCTgtaaacgcaggctgagtgcgtgggagcaccagacaggggggaaatgagta Alignment from GeneWise taggccgggtcagatcttccagccaattcatttctgattccttcttgacag #### Sf3b2_ID907_11 --> 0 - 0 Original Alignment GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGT-TTTACTGTGGCAGAACTCAAGCAG tcgggccgcatcacctgatgacacctaagtctgtgttttctttttttcagAAAAAGAAGCCAGAAGCCCCCAAACTGTCAAGGAAGAAGTTGCGCCGAATGAATCGGCTTTACTGTGGCAGAGCTCAAGCAGgtaaattctgggatggtcaagtcagttcttcagtattgctgggcatccac Alignment from CESAR GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGT-TTTACTGTGGCAGAACTCAAGCAG tcgggccgcatcacctgatgacacctaagtctgtgttttctttttttcagAAAAAGAAGCCAGAAGCCCCCAAACTGTCAAGGAAGAAGTTGCGCCGAATGAATCGGCTTTACTGTGGCAGAGCTCAAGCAGgtaaattctgggatggtcaagtcagttcttcagtattgctgggcatccac Alignment from Spaln_aa2Genome GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGT-TTTACTGTGGCAGAACTCAAGCAG tcgggccgcatcacctgatgacacctaagtctgtgttttctttttttcagAAAAAGAAGCCAGAAGCCCCCAAACTGTCAAGGAAGAAGTTGCGCCGAATGAATCGGcTTTACTGTGGCAGAGCTCAAGCAGgtaaattctgggatggtcaagtcagttcttcagtattgctgggcatccac Alignment from Spaln_nt2Genome GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGT-TTTACTGTGGCAGAACTCAAGCAG tcgggccgcatcacctgatgacacctaagtctgtgttttctttttttcagAAAAAGAAGCCAGAAGCCCCCAAACTGTCAAGGAAGAAGTTGCGCCGAATGAATCGGCTTTACTGTGGCAGAGCTCAAGCAGgtaaattctgggatggtcaagtcagttcttcagtattgctgggcatccac Alignment from Pairagon GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATC-GTTTTACTGTGGCAGAACTCAAGCAG tcgggccgcatcacctgatgacacctaagtctgtgttttctttttttcagAAAAAGAAGCCAGAAGCCCCCAAACTGTCAAGGAAGAAGTTGCGCCGAATGAATCGGCTTTACTGTGGCAGAGCTCAAGCAGgtaaattctgggatggtcaagtcagttcttcagtattgctgggcatccac Alignment from Exonerate_protein2genome GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGT-TTTACTGTGGCAGAACTCAAGCAG tcgggccgcatcacctgatgacacctaagtctgtgttttctttttttcagAAAAAGAAGCCAGAAGCCCCCAAACTGTCAAGGAAGAAGTTGCGCCGAATGAATCGGCTTTACTGTGGCAGAGCTCAAGCAGgtaaattctgggatggtcaagtcagttcttcagtattgctgggcatccac Alignment from Exonerate_coding2genome GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAATCGT-TTTACTGTGGCAGAACTCAAGCAG tcgggccgcatcacctgatgacacctaagtctgtgttttctttttttcagAAAAAGAAGCCAGAAGCCCCCAAACTGTCAAGGAAGAAGTTGCGCCGAATGAATCGGCTTTACTGTGGCAGAGCTCAAGCAGgtaaattctgggatggtcaagtcagttcttcagtattgctgggcatccac Alignment from GeneWise GAAAAGAAGCCGGAAGCCCCTAAACTGTCGAAGAAGAAGTTGCGCCGAATGAAT-CGTTTTACTGTGGCAGAACTCAAGCAG tcgggccgcatcacctgatgacacctaagtctgtgttttctttttttcagAAAAAGAAGCCAGAAGCCCCCAAACTGTCAAGGAAGAAGTTGCGCCGAATGAATCGGCTTTACTGTGGCAGAGCTCAAGCAGgtaaattctgggatggtcaagtcagttcttcagtattgctgggcatccac #### Sf3b2_ID909_9 --> 0 - 0 Original Alignment AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGAC-GTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG ggttgggggatgaggatcctctgacctatctttctcgtttctctccctagAAAAACCGAAAGCGTCAGAACCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGGCAGCCTCATCAGAGAGTTCTGGGGACCGAGAAAAGGACTCTGGTCGGTCCCAAGGCTCAGGCCCCCCCACAGGT---CGTAGAGATTGAGTATGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATATTTGAGGCCTTTAAGgtaaccaggctcatgtgctctgaggacctaccttgcttaagggggcatgg Alignment from CESAR AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG ggttgggggatgaggatcctctgacctatctttctcgtttctctccctagAAAAACCGAAAGCGTCAGAACCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGGCAGCCTCATCAGAGAGTTCTGGGGACCGAGAAAAGGACTCTGGTCGGTCCCAAGGCTCAGGCCCCCCCACAGGT--CGTAGAGATTGAGTATGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATATTTGAGGCCTTTAAGgtaaccaggctcatgtgctctgaggacctaccttgcttaagggggcatgg Alignment from Spaln_aa2Genome AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG ggttgggggatgaggatcctctgacctatctttctcgtttctctccctagAAAAACCGAAAGCGTCAGAACCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGGCAGCCTCATCAGAGAGTTCTGGGGACCGAGAAAAGGACTCTGGTCGGTCCCAAGGCTCAGGCCCCCCCACAGGTC--GTAGAGATTGAGTATGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATATTTGAGGCCTTTAAGgtaaccaggctcatgtgctctgaggacctaccttgcttaagggggcatgg Alignment from Spaln_nt2Genome AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG ggttgggggatgaggatcctctgacctatctttctcgtttctctccctagAAAAACCGAAAGCGTCAGAACCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGGCAGCCTCATCAGAGAGTTCTGGGGACCGAGAAAAGGACTCTGGTCGGTCCCAAGGCTCAGGCCCCCCCACAG--GTCGTAGAGATTGAGTATGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATATTTGAGGCCTTTAAGgtaaccaggctcatgtgctctgaggacctaccttgcttaagggggcatgg Alignment from Pairagon AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG ggttgggggatgaggatcctctgacctatctttctcgtttctctccctagAAAAACCGAAAGCGTCAGAACCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGGCAGCCTCATCAGAGAGTTCTGGGGACCGAGAAAAGGACTCTGGTCGGTCCCAAGGCTCAGGCCCCCCCACAGGT--CGTAGAGATTGAGTATGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATATTTGAGGCCTTTAAGgtaaccaggctcatgtgctctgaggacctaccttgcttaagggggcatgg Alignment from Exonerate_protein2genome AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCT-GCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG ggttgggggatgaggatcctctgacctatctttctcgtttctctccctagAAAAACCGAAAGCGTCAGAACCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGGCAGCCTCATCAGAGAGTTCTGGGGACCGAGAAAAGGACTCTGGTCGGTCCCAAGGCTCAGGCCCCCCCACAGGTC---GTAGAGATTGAGTATGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATATTTGAGGCCTTTAAGgtaaccaggctcatgtgctctgaggacctaccttgcttaagggggcatgg Alignment from Exonerate_coding2genome AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCT-GCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG ggttgggggatgaggatcctctgacctatctttctcgtttctctccctagAAAAACCGAAAGCGTCAGAACCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGGCAGCCTCATCAGAGAGTTCTGGGGACCGAGAAAAGGACTCTGGTCGGTCCCAAGGCTCAGGCCCCCCCACAGGTC---GTAGAGATTGAGTATGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATATTTGAGGCCTTTAAGgtaaccaggctcatgtgctctgaggacctaccttgcttaagggggcatgg Alignment from GeneWise AAAAACCGAAAGCGTCGGAACCGAAAGAAGAAGAAAAAGCCACAGCGGGTGCGGGCAGCCTCATCAGAGAGCTCTGGGGACCGAGAGAAGGACTCCGGTCGGTCCCGCGGCTCGGACCCCCCTGCTGCTGACGTGGAGATTGAGTATGTGACCGAGGAGCCTGAGATCTACGAGCCCAATTTCATCTTCTTCAAGAGGATTTTTGAGGCTTTCAAG ggttgggggatgaggatcctctgacctatctttctcgtttctctccctagAAAAACCGAAAGCGTCAGAACCGGAAGAAGAAAAAAAAACCAAAGCAGGTGCGGGCAGCCTCATCAGAGAGTTCTGGGGACCGAGAAAAGGACTCTGGTCGGTCCCAAGGCTCAGGCCCCCCCACAGGTC--GTAGAGATTGAGTATGTGAGTGAGGAGCCTGAGATGTATGAGCCCAATTTCATCTTCTTCAAGAGGATATTTGAGGCCTTTAAGgtaaccaggctcatgtgctctgaggacctaccttgcttaagggggcatgg #### Sf3b2_ID910_8 --> 2 - 0 Original Alignment agGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAG-GAGGACACGGTGTCCATATCCAAAAAAGAG aggaagcttttacagttaggagagttcaacctgttggctttgttttccagagAAGGAAGAAATGGAGACAGTTACTCGCTCATCTCTAGGACAGTCTGCATCAGAGACTGAGCGAGGACACAGTGTCCATATCCAAAAAAGAGgtgagagtttagtaggagtatgccacttttctgtgagtttcttggctgtc Alignment from CESAR agGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAG-GAGGACACGGTGTCCATATCCAAAAAAGAG aggaagcttttacagttaggagagttcaacctgttggctttgttttccagagAAGGAAGAAATGGAGACAGTTACTCGCTCATCTCTAGGACAGTCTGCATCAGAGACTGAGCGAGGACACAGTGTCCATATCCAAAAAAGAGgtgagagtttagtaggagtatgccacttttctgtgagtttcttggctgtc Alignment from Spaln_aa2Genome CAGGAGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAG-GAGGACACGGTGTCCATATCCAAAAAAGAG aagcttttacagttaggagagttcaacctgttggctttgttttcca gAGAAGGAAGAAATGGAGACAGTTACTCGCTCATCTCTAGGACAGTCTGCATCAGAGACTGAGcGAGGACACAGTGTCCATATCCAAAAAAGAGgtgagagtttagtaggagtatgccacttttctgtgagtttcttggctgtc Alignment from Spaln_nt2Genome AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAG-GAGGACACGGTGTCCATATCCAAAAAAGAG aggaagcttttacagttaggagagttcaacctgttggctttgttttccagAGAAGGAAGAAATGGAGACAGTTACTCGCTCATCTCTAGGACAGTCTGCATCAGAGACTGAGCGAGGACACAGTGTCCATATCCAAAAAAGAGgtgagagtttagtaggagtatgccacttttctgtgagtttcttggctgtc Alignment from Pairagon AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAG-GAGGACACGGTGTCCATATCCAAAAAAGAG aggaagcttttacagttaggagagttcaacctgttggctttgttttccagAGAAGGAAGAAATGGAGACAGTTACTCGCTCATCTCTAGGACAGTCTGCATCAGAGACTGAGCGAGGACACAGTGTCCATATCCAAAAAAGAGgtgagagtttagtaggagtatgccacttttctgtgagtttcttggctgtc Alignment from Exonerate_protein2genome AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAG-GAGGACACGGTGTCCATATCCAAAAAAGAG aggaagcttttacagttaggagagttcaacctgttggctttgttttccagAGAAGGAAGAAATGGAGACAGTTACTCGCTCATCTCTAGGACAGTCTGCATCAGAGACTGAGCGAGGACACAGTGTCCATATCCAAAAAAGAGgtgagagtttagtaggagtatgccacttttctgtgagtttcttggctgtc Alignment from Exonerate_coding2genome AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAG-GAGGACACGGTGTCCATATCCAAAAAAGAG aggaagcttttacagttaggagagttcaacctgttggctttgttttccagAGAAGGAAGAAATGGAGACAGTTACTCGCTCATCTCTAGGACAGTCTGCATCAGAGACTGAGCGAGGACACAGTGTCCATATCCAAAAAAGAGgtgagagtttagtaggagtatgccacttttctgtgagtttcttggctgtc Alignment from GeneWise AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACT-GAGGAGGACACGGTGTCCATATCCAAAAAAGAG aggaagcttttacagttaggagagttcaacctgttggctttgttttccagAGAAGGAAGAAATGGAGACAGTTACTCGCTCATCTCTAGGACAGTCTGCATCAGAGACTGAGCGAGGACACAGTGTCCATATCCAAAAAAGAGgtgagagtttagtaggagtatgccacttttctgtgagtttcttggctgtc #### Sf3b2_ID911_7 --> 0 - 1 Original Alignment ATGGATGATCCTTCTGTGGGCCCCAAG-ATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGg gaggatggcatttttcggtttcagccccatcttctgaatttctctttcagATT---GACCCTTCTGTGGGCCCTAAGCATCCCTCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCAGCAGCAAGAGATGAACTCTCAG---ggtaaatgagattgaaccttgccttgatgctgcaacagcacataagctggg Alignment from CESAR ATGGATGATCCTTCTGTGGGCCCCAAG-ATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGg gaggatggcatttttcggtttcagccccatcttctgaatttctctttcagATT---GACCCTTCTGTGGGCCCTAAGCATCCCTCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCAGCAGCAAGAGATGAACTCTCAG---ggtaaatgagattgaaccttgccttgatgctgcaacagcacataagctggg Alignment from Spaln_aa2Genome ATGGATGATCCTTCTGTGGGCCCCAAG-ATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAG- gaggatggcatttttcggtttcagccccatcttctgaatttctctttcagATT---GACCCTTCTGTGGGCCCTAAGcATCCCTCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCAGCAGCAAGAGATGAACTCTCAGGgtaaatgagattgaaccttgccttgatgctgcaacagcacataagctggg Alignment from Spaln_nt2Genome ATGGATGATCCTTCTGTGGGCCCCAAG-ATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG gaggatggcatttttcggtttcagccccatcttctgaatttctctttcagAT---TGACCCTTCTGTGGGCCCTAAGCATCCCTCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCAGCAGCAAGAGATGAACTCT---CAGGgtaaatgagattgaaccttgccttgatgctgcaacagcacataagctggg Alignment from Pairagon ATGGATGATCCTTCTGTGGGCCCCAAG-ATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG gaggatggcatttttcggtttcagccccatcttctgaatttctctttcagAT---TGACCCTTCTGTGGGCCCTAAGCATCCCTCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCAGCAGCAAGAGATGAACTCT---CAGGgtaaatgagattgaaccttgccttgatgctgcaacagcacataagctggg Alignment from Exonerate_protein2genome ATGGATGATCCTTCTGTGGGCCCCAAG-ATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG gaggatggcatttttcggtttcagccccatcttctgaatttctctttcagATT---GACCCTTCTGTGGGCCCTAAGCATCCCTCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCAGCAGCAAGAGATGAACTCT---CAGGgtaaatgagattgaaccttgccttgatgctgcaacagcacataagctggg Alignment from Exonerate_coding2genome ATGGATGATCCTTCTGTGGGCCCCAAG-ATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAGCAGG gaggatggcatttttcggtttcagccccatcttctgaatttctctttcagATT---GACCCTTCTGTGGGCCCTAAGCATCCCTCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCAGCAGCAAGAGATGAACTCT---CAGGgtaaatgagattgaaccttgccttgatgctgcaacagcacataagctggg Alignment from GeneWise ATGGATGATCCTTCTGTGGGCCCCAAG-ATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGCAGGAAGAGATGAACTCTCAG- gaggatggcatttttcggtttcagccccatcttctgaatttctctttcagATTGAC---CCTTCTGTGGGCCCTAAGCATCCCTCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCAGCAGCAAGAGATGAACTCTCAGGgtaaatgagattgaaccttgccttgatgctgcaacagcacataagctggg #### Sf3b2_ID916_2 --> 2 - 0 Original Alignment ggAGTCGCGAGGAGTTAGTA-GAGCGGCTGCAGACCTACACCCGTCAG agcttgtctacccaggaaaccagcatagcctaactgggtgccacctgcagggAGTCGTGAGGAATTAGTACGAGCGGCTGCAGACCTATACCCGTCAGgtgaggatttcctgcaggctatgtttcacgtttcctgaagtcatctaaga Alignment from CESAR ggAGTCGCGAGGAGTTAGTA-GAGCGGCTGCAGACCTACACCCGTCAG agcttgtctacccaggaaaccagcatagcctaactgggtgccacctgcagggAGTCGTGAGGAATTAGTACGAGCGGCTGCAGACCTATACCCGTCAGgtgaggatttcctgcaggctatgtttcacgtttcctgaagtcatctaaga Alignment from Spaln_aa2Genome GGAGTCGCGAGGAGTTAGTA-GAGCGGCTGCAGACCTACACCCGTCAG agcttgtctacccaggaaaccagcatagcctaactgggtgccacctgcagGGAGTCGTGAGGAATTAGTAcGAGCGGCTGCAGACCTATACCCGTCAGgtgaggatttcctgcaggctatgtttcacgtttcctgaagtcatctaaga Alignment from Spaln_nt2Genome GGAGTCGCGAGGAGTTAGTA-GAGCGGCTGCAGACCTACACCCGTCAG agcttgtctacccaggaaaccagcatagcctaactgggtgccacctgcagGGAGTCGTGAGGAATTAGTACGAGCGGCTGCAGACCTATACCCGTCAGgtgaggatttcctgcaggctatgtttcacgtttcctgaagtcatctaaga Alignment from Pairagon GGAGTCGCGAGGAGTTAGTA-GAGCGGCTGCAGACCTACACCCGTCAG agcttgtctacccaggaaaccagcatagcctaactgggtgccacctgcagGGAGTCGTGAGGAATTAGTACGAGCGGCTGCAGACCTATACCCGTCAGgtgaggatttcctgcaggctatgtttcacgtttcctgaagtcatctaaga Alignment from Exonerate_protein2genome GGAGTCGCGAGGAGTTAGTA-GAGCGGCTGCAGACCTACACCCGTCAG agcttgtctacccaggaaaccagcatagcctaactgggtgccacctgcagGGAGTCGTGAGGAATTAGTACGAGCGGCTGCAGACCTATACCCGTCAGgtgaggatttcctgcaggctatgtttcacgtttcctgaagtcatctaaga Alignment from Exonerate_coding2genome GGAGTCGCGAGGAGTTAGTA-GAGCGGCTGCAGACCTACACCCGTCAG agcttgtctacccaggaaaccagcatagcctaactgggtgccacctgcagGGAGTCGTGAGGAATTAGTACGAGCGGCTGCAGACCTATACCCGTCAGgtgaggatttcctgcaggctatgtttcacgtttcctgaagtcatctaaga Alignment from GeneWise agcttgtctacccaggaaaccagcatagcctaactgggtgccacctgcagggagtcgtgaggaattagtacgagcggctgcagacctatacccgtcaggtgaggatttcctgcaggctatgtttcacgtttcctgaagtcatctaaga #### Sfxn2_ID9969_7 --> 0 - 1 Original Alignment AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACC-ATGGCAGCCCCT---GGCATGa cctggacagctgaaacatgatccctggcgaatgacttttctgtgttgcagAGAGCGGCAACCGTGGGCATCGCACAAGTGGTCATCTCTCGGATCACACATGGCAGCCCCTGCTGGCATGagtaaggttgatggagaacacctcatacagatccttgaatacctagttgca Alignment from CESAR AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACC-ATGGCAGCCCCT---GGCATGa cctggacagctgaaacatgatccctggcgaatgacttttctgtgttgcagAGAGCGGCAACCGTGGGCATCGCACAAGTGGTCATCTCTCGGATCACACATGGCAGCCCCTGCTGGCATGagtaaggttgatggagaacacctcatacagatccttgaatacctagttgca Alignment from Spaln_aa2Genome AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCTG cctggacagctgaaacatgatccctggcgaatgacttttctgtgttgcagAGAGCGGCAACCGTGGGCATCGCACAAGTGGTCATCTCTCGGATCACACATGGCAGCCCCTgctggcatgagtaaggttgatggagaacacctcatacagatccttgaatacctagttgca Alignment from Spaln_nt2Genome AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCAC-CATGGCAGCCCCTG---GCATGA cctggacagctgaaacatgatccctggcgaatgacttttctgtgttgcagAGAGCGGCAACCGTGGGCATCGCACAAGTGGTCATCTCTCGGATCACACATGGCAGCCCCTGCTGGCATGAgtaaggttgatggagaacacctcatacagatccttgaatacctagttgca Alignment from Pairagon AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCAC-CATGGCAGCCC---CTGGCATGA cctggacagctgaaacatgatccctggcgaatgacttttctgtgttgcagAGAGCGGCAACCGTGGGCATCGCACAAGTGGTCATCTCTCGGATCACACATGGCAGCCCCTGCTGGCATGAgtaaggttgatggagaacacctcatacagatccttgaatacctagttgca Alignment from Exonerate_protein2genome AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCTGGCATGA cctggacagctgaaacatgatccctggcgaatgacttttctgtgttgcagAGAGCGGCAACCGTGGGCATCGCACAAGTGGTCATCTCTCGGATCACACATGGCAGCCCCTGCTGGCatgagtaaggttgatggagaacacctcatacagatccttgaatacctagttgca Alignment from Exonerate_coding2genome AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCTGGCATGA cctggacagctgaaacatgatccctggcgaatgacttttctgtgttgcagAGAGCGGCAACCGTGGGCATCGCACAAGTGGTCATCTCTCGGATCACACATGGCAGCCCCTGCTGGCatgagtaaggttgatggagaacacctcatacagatccttgaatacctagttgca Alignment from GeneWise AGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATC-ACCATGGCAGCCCCT---GGCATGA cctggacagctgaaacatgatccctggcgaatgacttttctgtgttgcagAGAGCGGCAACCGTGGGCATCGCACAAGTGGTCATCTCTCGGATCACACATGGCAGCCCCTGCTGGCATGAgtaaggttgatggagaacacctcatacagatccttgaatacctagttgca #### Sfxn3_ID9291_9 --> 1 - 2 Original Alignment cTTGGTATTTGCCACA-CCCCTGTGCTGCGCTCTGTTCCCTCAGAGAag acttcatcctgatcagtgtcacagtcatttcatttaatctcttctgcaagcTTGGTCTTTGCCACACCCCCTGTGTTGTGCCTTGTTCCCTCAGAGAaggtgagagataccaatctacttgatttgcattgataagcagtgtgtttcca Alignment from CESAR cTTGGTATTTGCCACACCC-CTGTGCTGCGCTCTGTTCCCTCAGAGAag acttcatcctgatcagtgtcacagtcatttcatttaatctcttctgcaagcTTGGTCTTTGCCACACCCCCTGTGTTGTGCCTTGTTCCCTCAGAGAaggtgagagataccaatctacttgatttgcattgataagcagtgtgtttcca Alignment from Spaln_aa2Genome CTTGGTATTTGCCACACCC-CTGTGCTGCGCTCTGTTCCCTCAGAGAAG acttcatcctgatcagtgtcacagtcatttcatttaatctcttctgcaagCTTGGTCTTTGCCACACCCcCTGTGTTGTGCCTTGTTCCCTCAGAGAAGgtgagagataccaatctacttgatttgcattgataagcagtgtgtttcca Alignment from Spaln_nt2Genome CTTGGTATTTGCCACACCCC-TGTGCTGCGCTCTGTTCCCTCAGAGAAG acttcatcctgatcagtgtcacagtcatttcatttaatctcttctgcaagCTTGGTCTTTGCCACACCCCCTGTGTTGTGCCTTGTTCCCTCAGAGAAGgtgagagataccaatctacttgatttgcattgataagcagtgtgtttcca Alignment from Pairagon CTTGGTATTTGCCACA-CCCCTGTGCTGCGCTCTGTTCCCTCAGAGAAG acttcatcctgatcagtgtcacagtcatttcatttaatctcttctgcaagCTTGGTCTTTGCCACACCCCCTGTGTTGTGCCTTGTTCCCTCAGAGAAGgtgagagataccaatctacttgatttgcattgataagcagtgtgtttcca Alignment from Exonerate_protein2genome CTTGGTATTTGCCACA-CCCCTGTGCTGCGCTCTGTTCCCTCAGAGAAG acttcatcctgatcagtgtcacagtcatttcatttaatctcttctgcaagCTTGGTCTTTGCCACACCCCCTGTGTTGTGCCTTGTTCCCTCAGAGAAGgtgagagataccaatctacttgatttgcattgataagcagtgtgtttcca Alignment from Exonerate_coding2genome CTTGGTATTTGCCACA-CCCCTGTGCTGCGCTCTGTTCCCTCAGAGAAG acttcatcctgatcagtgtcacagtcatttcatttaatctcttctgcaagCTTGGTCTTTGCCACACCCCCTGTGTTGTGCCTTGTTCCCTCAGAGAAGgtgagagataccaatctacttgatttgcattgataagcagtgtgtttcca Alignment from GeneWise acttcatcctgatcagtgtcacagtcatttcatttaatctcttctgcaagcttggtctttgccacaccccctgtgttgtgccttgttccctcagagaaggtgagagataccaatctacttgatttgcattgataagcagtgtgtttcca #### Sipa1_ID1139_13 --> 2 - 2 Original Alignment gaCAACCCATCTCAGAGAGCGGAGAC-CCCAAGGAAGCTTTAAAGTGTGATTCTga gccagttggatgtttactccctcagaccagagctctgtgtctcctcccagggCAACCCATCTCAGAGAGTGGAGATCCCCAAGGAAGCTTTAAAGTGTGATTCTgagtaagtttttttgccctcatatacccacccttgtgattgtgttgcctgat Alignment from CESAR gaCAACCCATCTCAGAGAGCGGAGAC-CCCAAGGAAGCTTTAAAGTGTGATTCTga gccagttggatgtttactccctcagaccagagctctgtgtctcctcccagggCAACCCATCTCAGAGAGTGGAGATCCCCAAGGAAGCTTTAAAGTGTGATTCTgagtaagtttttttgccctcatatacccacccttgtgattgtgttgcctgat Alignment from Spaln_aa2Genome GACAACCCATCTCAGAGAGCGGAGAC-CCCAAGGAAGCTTTAAAGTGTGATTCTGA gccagttggatgtttactccctcagaccagagctctgtgtctcctcccagGGCAACCCATCTCAGAGAGTGGAGATcCCCAAGGAAGCTTTAAAGTGTGATTCTGAgtaagtttttttgccctcatatacccacccttgtgattgtgttgcctgat Alignment from Spaln_nt2Genome GACAACCCATCTCAGAGAGCGGAGA-CCCCAAGGAAGCTTTAAAGTGTGATTCTGA gccagttggatgtttactccctcagaccagagctctgtgtctcctcccagGGCAACCCATCTCAGAGAGTGGAGATCCCCAAGGAAGCTTTAAAGTGTGATTCTGAgtaagtttttttgccctcatatacccacccttgtgattgtgttgcctgat Alignment from Pairagon GACAACCCATCTCAGAGAGCGGAGA-CCCCAAGGAAGCTTTAAAGTGTGATTCTGA gccagttggatgtttactccctcagaccagagctctgtgtctcctcccagGGCAACCCATCTCAGAGAGTGGAGATCCCCAAGGAAGCTTTAAAGTGTGATTCTGAgtaagtttttttgccctcatatacccacccttgtgattgtgttgcctgat Alignment from Exonerate_protein2genome gccagttggatgtttactccctcagaccagagctctgtgtctcctcccagggcaacccatctcagagagtggagatccccaaggaagctttaaagtgtgattctgagtaagtttttttgccctcatatacccacccttgtgattgtgttgcctgat Alignment from Exonerate_coding2genome gccagttggatgtttactccctcagaccagagctctgtgtctcctcccagggcaacccatctcagagagtggagatccccaaggaagctttaaagtgtgattctgagtaagtttttttgccctcatatacccacccttgtgattgtgttgcctgat Alignment from GeneWise gccagttggatgtttactccctcagaccagagctctgtgtctcctcccagggcaacccatctcagagagtggagatccccaaggaagctttaaagtgtgattctgagtaagtttttttgccctcatatacccacccttgtgattgtgttgcctgat #### Sipa1_ID1140_12 --> 2 - 1 Original Alignment ttATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAG-TGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGg ccctcctcccgatgcctcccttttgaagaagctgccaccctcccttccagttATGCCAGAAGCTGGTAGTGAGACCTTGGAGGATGAACTGGCAGTCCATCTCAGAGATCACCTCCACTTGCAACACAATTCTGGAGTCACTGTCACGGGAAggtaagtctgccagttggatgtttactccctcagaccgggatgctcctctg Alignment from CESAR ccctcctcccgatgcctcccttttgaagaagctgccaccctcccttccagttatgccagaagctggtagtgagaccttggaggatgaactggcagtccatctcagagatcacctccacttgcaacacaattctggagtcactgtcacgggaaggtaagtctgccagttggatgtttactccctcagaccagagctctgtgtct Alignment from Spaln_aa2Genome -TGGCAGTCCATCTCAGAGATCGCCTCCACTTGC------AACACAATTCTGGAGTCACTGTCCCGGGAGG ccctcctcccgatgcctcccttttgaagaagctgccaccctcccttccagttatgccagaagctggtagtgagaccttggagGATGAACTGGCAGTCCATCTCAGAGATCACCTCCACTTGCAACACAATTCTGGAGTCACTGTCACGGGAAGgtaagtctgccagttggatgtttactccctcagaccgggatgctcctctg Alignment from Spaln_nt2Genome GTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG ccctcctcccgatgcctcccttttgaagaagctgccaccctcccttccagttatgccagaagctggtagtgagaccttggaggatgaactggcagTCC-ATCTCAGAGATCACCTCCACTTGCAACACAATTCTGGAGTCACTGTCACGGGAAGgtaagtctgccagttggatgtttactccctcagaccgggatgctcctctg Alignment from Pairagon TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAG-TGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG ccctcctcccgatgcctcccttttgaagaagctgccaccctcccttccagTTATGCCAGAAGCTGGTAGTGAGACCTTGGAGGATGAACTGGCAGTCCATCTCAGAGATCACCTCCACTTGCAACACAATTCTGGAGTCACTGTCACGGGAAGgtaagtctgccagttggatgtttactccctcagaccgggatgctcctctg Alignment from Exonerate_protein2genome ccctcctcccgatgcctcccttttgaagaagctgccaccctcccttccagttatgccagaagctggtagtgagaccttggaggatgaactggcagtccatctcagagatcacctccacttgcaacacaattctggagtcactgtcacgggaaggtaagtctgccagttggatgtttactccctcagaccgggatgctcctctg Alignment from Exonerate_coding2genome ccctcctcccgatgcctcccttttgaagaagctgccaccctcccttccagttatgccagaagctggtagtgagaccttggaggatgaactggcagtccatctcagagatcacctccacttgcaacacaattctggagtcactgtcacgggaaggtaagtctgccagttggatgtttactccctcagaccgggatgctcctctg Alignment from GeneWise ccctcctcccgatgcctcccttttgaagaagctgccaccctcccttccagttatgccagaagctggtagtgagaccttggaggatgaactggcagtccatctcagagatcacctccacttgcaacacaattctggagtcactgtcacgggaaggtaagtctgccagttggatgtttactccctcagaccgggatgctcctctg #### Sipa1_ID1141_11 --> 0 - 1 Original Alignment GACCAGTCAGGAAGCCCCAGT-AGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGa gccaagttaacattggatgccatattatgtgttctcactttaccctacagGATCAGTCAGGAAGCCCCAGTCAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCAGGACTCTGTCTCTACGGAATTCCATCAGTAAGagtaaagtggggaaacaggtcagggggaggagactgcccctagcccctgtg Alignment from CESAR GACCAGTCAGGAAGCCCCAGT-AGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGa gccaagttaacattggatgccatattatgtgttctcactttaccctacagGATCAGTCAGGAAGCCCCAGTCAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCAGGACTCTGTCTCTACGGAATTCCATCAGTAAGagtaaagtggggaaacaggtcagggggaggagactgcccctagcccctgtg Alignment from Spaln_aa2Genome GTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gccaagttaacattggatgccatattatgtgttctcactttaccctacaggatcagTCAGGAAGCCCCAGTCAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCAGGACTCTGTCTCTACGGAATTCCATCAGTAAGAgtaaagtggggaaacaggtcagggggaggagactgcccctagcccctgtg Alignment from Spaln_nt2Genome GACCAGTCAGGAAGCCCCAGT-AGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gccaagttaacattggatgccatattatgtgttctcactttaccctacagGATCAGTCAGGAAGCCCCAGTCAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCAGGACTCTGTCTCTACGGAATTCCATCAGTAAGAgtaaagtggggaaacaggtcagggggaggagactgcccctagcccctgtg Alignment from Pairagon GACCAGTCAGGAAGCCCCAGT-AGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gccaagttaacattggatgccatattatgtgttctcactttaccctacagGATCAGTCAGGAAGCCCCAGTCAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCAGGACTCTGTCTCTACGGAATTCCATCAGTAAGAgtaaagtggggaaacaggtcagggggaggagactgcccctagcccctgtg Alignment from Exonerate_protein2genome GACCAGTCAGGAAGCCCCAGT-AGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gccaagttaacattggatgccatattatgtgttctcactttaccctacagGATCAGTCAGGAAGCCCCAGTCAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCAGGACTCTGTCTCTACGGAATTCCATCAGTAAGAgtaaagtggggaaacaggtcagggggaggagactgcccctagcccctgtg Alignment from Exonerate_coding2genome GACCAGTCAGGAAGCCCCAGT-AGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gccaagttaacattggatgccatattatgtgttctcactttaccctacagGATCAGTCAGGAAGCCCCAGTCAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCAGGACTCTGTCTCTACGGAATTCCATCAGTAAGAgtaaagtggggaaacaggtcagggggaggagactgcccctagcccctgtg Alignment from GeneWise -----------------------------------------------CAGGACCAGTCAGGAAGCCCCAGT-AGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA GCCAAGTTAACATTGGATGCCATATTATGTGTTCTCACTTTACCCTACAGGATCAGTCAGGAAGCCCCAGTCAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAAGGCCTCCATCCTGCCCAGGACTCTGTCTCTACGGAATTCCATCAGTAAGAgtaaagtggggaaacaggtcagggggaggagactgcccctagcccctgtg #### Sipa1_ID1142_10 --> 1 - 0 Original Alignment cTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTC-CTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG ctgtggaaaagcagctccactgtgagctagccctgtacatttctccccagcTCCCTGTCTGATGAGGTCCCAGTCCTACCCAACACCACACCAGACCTCCTCCCTTGTCACCACAGCCAACACTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtaggctgccaagttaacattggatgccatattataccctagcaattctg Alignment from CESAR cTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTC-CTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG ctgtggaaaagcagctccactgtgagctagccctgtacatttctccccagcTCCCTGTCTGATGAGGTCCCAGTCCTACCCAACACCACACCAGACCTCCTCCCTTGTCACCACAGCCAACACTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtaggctgccaagttaacattggatgccatattatgtgttctcactttac Alignment from Spaln_aa2Genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTC-CTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG ctgtggaaaagcagctccactgtgagctagccctgtacatttctccccagCTCCCTGTCTGATGAGGTCCCAGTCCTACCCAACACCACACCAGACCTCCTCcCTTGTCACCACAGCCAACACTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtaggctgccaagttaacattggatgccatattataccctagcaattctg Alignment from Spaln_nt2Genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCT-CCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG ctgtggaaaagcagctccactgtgagctagccctgtacatttctccccagCTCCCTGTCTGATGAGGTCCCAGTCCTACCCAACACCACACCAGACCTCCTCCCTTGTCACCACAGCCAACACTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtaggctgccaagttaacattggatgccatattataccctagcaattctg Alignment from Pairagon CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCT-CCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG ctgtggaaaagcagctccactgtgagctagccctgtacatttctccccagCTCCCTGTCTGATGAGGTCCCAGTCCTACCCAACACCACACCAGACCTCCTCCCTTGTCACCACAGCCAACACTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtaggctgccaagttaacattggatgccatattataccctagcaattctg Alignment from Exonerate_protein2genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTC-CTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG ctgtggaaaagcagctccactgtgagctagccctgtacatttctccccagCTCCCTGTCTGATGAGGTCCCAGTCCTACCCAACACCACACCAGACCTCCTCCCTTGTCACCACAGCCAACACTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtaggctgccaagttaacattggatgccatattataccctagcaattctg Alignment from Exonerate_coding2genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTC-CTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG ctgtggaaaagcagctccactgtgagctagccctgtacatttctccccagCTCCCTGTCTGATGAGGTCCCAGTCCTACCCAACACCACACCAGACCTCCTCCCTTGTCACCACAGCCAACACTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtaggctgccaagttaacattggatgccatattataccctagcaattctg Alignment from GeneWise CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTC-CTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG ctgtggaaaagcagctccactgtgagctagccctgtacatttctccccagCTCCCTGTCTGATGAGGTCCCAGTCCTACCCAACACCACACCAGACCTCCTCCCTTGTCACCACAGCCAACACTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtaggctgccaagttaacattggatgccatattataccctagcaattctg #### Sipa1_ID1145_7 --> 1 - 0 Original Alignment gGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAG-GCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccagcccctctttccctccttggtcatttatctactttaggGTGGCAGTGAGTCGAACCCAAGACACTCCTGCTTTCAGACCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATGGGCTAAGCGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTCGCTGGACTTGGCCTCACGGTTCGGCTTGCCATCTCTAGGGGGTAGACGCCATTCAAACCCGCGGAGCTCAGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCGGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCAGAGGACACTGAGGTGCCTTGCTTATTGGGCATCTCAGCCGAAACGCTGGTGCTGGTGGCACCTTGTGATGGCCATGTGGTCTTTAACTGTGCCTGTCGTGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgaggtactatcaaacattgtgatccttggtttggtgtgcaacaggggc Alignment from CESAR gGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAG-GCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccagcccctctttccctccttggtcatttatctactttaggGTGGCAGTGAGTCGAACCCAAGACACTCCTGCTTTCAGACCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATGGGCTAAGCGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTCGCTGGACTTGGCCTCACGGTTCGGCTTGCCATCTCTAGGGGGTAGACGCCATTCAAACCCGCGGAGCTCAGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCGGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCAGAGGACACTGAGGTGCCTTGCTTATTGGGCATCTCAGCCGAAACGCTGGTGCTGGTGGCACCTTGTGATGGCCATGTGGTCTTTAACTGTGCCTGTCGTGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgaggtactatcaaacattgtgatccttggtttggtgtgcaacaggggc Alignment from Spaln_aa2Genome GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAG-GCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccagcccctctttccctccttggtcatttatctactttagGGTGGCAGTGAGTCGAACCCAAGACACTCCTGCTTTCAGACCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATGGGCTAAGcGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTCGCTGGACTTGGCCTCACGGTTCGGCTTGCCATCTCTAGGGGGTAGACGCCATTCAAACCCGCGGAGCTCAGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCGGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCAGAGGACACTGAGGTGCCTTGCTTATTGGGCATCTCAGCCGAAACGCTGGTGCTGGTGGCACCTTGTGATGGCCATGTGGTCTTTAACTGTGCCTGTCGTGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgaggtactatcaaacattgtgatccttggtttggtgtgcaacaggggc Alignment from Spaln_nt2Genome GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAG-GCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccagcccctctttccctccttggtcatttatctactttagGGTGGCAGTGAGTCGAACCCAAGACACTCCTGCTTTCAGACCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATGGGCTAAGCGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTCGCTGGACTTGGCCTCACGGTTCGGCTTGCCATCTCTAGGGGGTAGACGCCATTCAAACCCGCGGAGCTCAGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCGGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCAGAGGACACTGAGGTGCCTTGCTTATTGGGCATCTCAGCCGAAACGCTGGTGCTGGTGGCACCTTGTGATGGCCATGTGGTCTTTAACTGTGCCTGTCGTGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgaggtactatcaaacattgtgatccttggtttggtgtgcaacaggggc Alignment from Pairagon GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAG-GCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccagcccctctttccctccttggtcatttatctactttagGGTGGCAGTGAGTCGAACCCAAGACACTCCTGCTTTCAGACCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATGGGCTAAGCGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTCGCTGGACTTGGCCTCACGGTTCGGCTTGCCATCTCTAGGGGGTAGACGCCATTCAAACCCGCGGAGCTCAGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCGGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCAGAGGACACTGAGGTGCCTTGCTTATTGGGCATCTCAGCCGAAACGCTGGTGCTGGTGGCACCTTGTGATGGCCATGTGGTCTTTAACTGTGCCTGTCGTGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgaggtactatcaaacattgtgatccttggtttggtgtgcaacaggggc Alignment from Exonerate_protein2genome GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAG-GCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccagcccctctttccctccttggtcatttatctactttagGGTGGCAGTGAGTCGAACCCAAGACACTCCTGCTTTCAGACCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATGGGCTAAGCGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTCGCTGGACTTGGCCTCACGGTTCGGCTTGCCATCTCTAGGGGGTAGACGCCATTCAAACCCGCGGAGCTCAGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCGGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCAGAGGACACTGAGGTGCCTTGCTTATTGGGCATCTCAGCCGAAACGCTGGTGCTGGTGGCACCTTGTGATGGCCATGTGGTCTTTAACTGTGCCTGTCGTGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgaggtactatcaaacattgtgatccttggtttggtgtgcaacaggggc Alignment from Exonerate_coding2genome GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAG-GCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccagcccctctttccctccttggtcatttatctactttagGGTGGCAGTGAGTCGAACCCAAGACACTCCTGCTTTCAGACCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATGGGCTAAGCGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTCGCTGGACTTGGCCTCACGGTTCGGCTTGCCATCTCTAGGGGGTAGACGCCATTCAAACCCGCGGAGCTCAGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCGGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCAGAGGACACTGAGGTGCCTTGCTTATTGGGCATCTCAGCCGAAACGCTGGTGCTGGTGGCACCTTGTGATGGCCATGTGGTCTTTAACTGTGCCTGTCGTGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgaggtactatcaaacattgtgatccttggtttggtgtgcaacaggggc Alignment from GeneWise GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAG-GCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gttggtgcctccagcccctctttccctccttggtcatttatctactttagGGTGGCAGTGAGTCGAACCCAAGACACTCCTGCTTTCAGACCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGGGCCTTTCCATGGGCTAAGCGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTCGCTGGACTTGGCCTCACGGTTCGGCTTGCCATCTCTAGGGGGTAGACGCCATTCAAACCCGCGGAGCTCAGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCGGGGGCACGGGTTGCAGCAGGAGCCGAAACAAGAGGTCCAGAGGACACTGAGGTGCCTTGCTTATTGGGCATCTCAGCCGAAACGCTGGTGCTGGTGGCACCTTGTGATGGCCATGTGGTCTTTAACTGTGCCTGTCGTGATGTATTGGCCTGGACCTTTTCAGAGCACCAACTTGATCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTCGTGGCACGTCTGCAGgtgaggtactatcaaacattgtgatccttggtttggtgtgcaacaggggc #### Sipa1_ID1147_5 --> 2 - 0 Original Alignment cgGATTCCACGGGCACACACTCACTCTACACCACCTACCAA-GACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tctccatgtccacactctcttctctctgaacctttgtgtgttttatttagcgGATTCCACGGGCACACACTCACTCTACACCACCTACCAACGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACACCTAATAACCAGCAACAGgtctccgaagagtttgagaagccaagcccggcaagagactattgggaagc Alignment from CESAR cgGATTCCACGGGCACACACTCACTCTACACCACCTACCAA-GACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tctccatgtccacactctcttctctctgaacctttgtgtgttttatttagcgGATTCCACGGGCACACACTCACTCTACACCACCTACCAACGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACACCTAATAACCAGCAACAGgtctccgaagagtttgagaagccaagcccggcaagagactattgggaagc Alignment from Spaln_aa2Genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAA-GACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tctccatgtccacactctcttctctctgaacctttgtgtgttttatttagCGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAcGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACACCTAATAACCAGCAACAGgtctccgaagagtttgagaagccaagcccggcaagagactattgggaagc Alignment from Spaln_nt2Genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAA-GACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tctccatgtccacactctcttctctctgaacctttgtgtgttttatttagCGGATTCCACGGGCACACACTCACTCTACACCACCTACCAACGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACACCTAATAACCAGCAACAGgtctccgaagagtttgagaagccaagcccggcaagagactattgggaagc Alignment from Pairagon CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAA-GACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tctccatgtccacactctcttctctctgaacctttgtgtgttttatttagCGGATTCCACGGGCACACACTCACTCTACACCACCTACCAACGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACACCTAATAACCAGCAACAGgtctccgaagagtttgagaagccaagcccggcaagagactattgggaagc Alignment from Exonerate_protein2genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAA-GACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tctccatgtccacactctcttctctctgaacctttgtgtgttttatttagCGGATTCCACGGGCACACACTCACTCTACACCACCTACCAACGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACACCTAATAACCAGCAACAGgtctccgaagagtttgagaagccaagcccggcaagagactattgggaagc Alignment from Exonerate_coding2genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAA-GACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tctccatgtccacactctcttctctctgaacctttgtgtgttttatttagCGGATTCCACGGGCACACACTCACTCTACACCACCTACCAACGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACACCTAATAACCAGCAACAGgtctccgaagagtttgagaagccaagcccggcaagagactattgggaagc Alignment from GeneWise CGGATTCCACGGGCACACACTCACTCTACACCACCTAC-CAAGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tctccatgtccacactctcttctctctgaacctttgtgtgttttatttagCGGATTCCACGGGCACACACTCACTCTACACCACCTACCAACGACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACACCTAATAACCAGCAACAGgtctccgaagagtttgagaagccaagcccggcaagagactattgggaagc #### Sipa1_ID1150_2 --> 2 - 0 Original Alignment aaCACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTAC-CGGGTCATCGTGCGGACCACGCAG aaagccactctccaaccaaccaacaacacttgctgattttttttttccagaaCATCAGAACTTCTTTGGGCTAGATGAGGCACTGGGCCCAGTGGCTTTGAGTCTTCAACGGGAGGAAAAAGAGGGCAGCGGAGGGGCCCCCCTACACAGCTTCCCGGGTAATTGTGCGAACCATGCAGgtaagtaaagatcacagggtaccatagcctatactatattgaattatttt Alignment from CESAR aaCACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTAC-CGGGTCATCGTGCGGACCACGCAG aaagccactctccaaccaaccaacaacacttgctgattttttttttccagaaCATCAGAACTTCTTTGGGCTAGATGAGGCACTGGGCCCAGTGGCTTTGAGTCTTCAACGGGAGGAAAAAGAGGGCAGCGGAGGGGCCCCCCTACACAGCTTCCCGGGTAATTGTGCGAACCATGCAGgtaagtaaagatcacagggtaccatagcctatactattttgcttgtttct Alignment from Spaln_aa2Genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTAC-CGGGTCATCGTGCGGACCACGCAG aaagccactctccaaccaaccaacaacacttgctgattttttttttccagAACATCAGAACTTCTTTGGGCTAGATGAGGCACTGGGCCCAGTGGCTTTGAGTCTTCAACGGGAGGAAAAAGAGGGCAGCGGAGGGGCCCCCCTACACAGCTTCcCGGGTAATTGTGCGAACCATGCAGgtaagtaaagatcacagggtaccatagcctatactatattgaattatttt Alignment from Spaln_nt2Genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACC-GGGTCATCGTGCGGACCACGCAG aaagccactctccaaccaaccaacaacacttgctgattttttttttccagAACATCAGAACTTCTTTGGGCTAGATGAGGCACTGGGCCCAGTGGCTTTGAGTCTTCAACGGGAGGAAAAAGAGGGCAGCGGAGGGGCCCCCCTACACAGCTTCCCGGGTAATTGTGCGAACCATGCAGgtaagtaaagatcacagggtaccatagcctatactatattgaattatttt Alignment from Pairagon AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGC-TACCGGGTCATCGTGCGGACCACGCAG aaagccactctccaaccaaccaacaacacttgctgattttttttttccagAACATCAGAACTTCTTTGGGCTAGATGAGGCACTGGGCCCAGTGGCTTTGAGTCTTCAACGGGAGGAAAAAGAGGGCAGCGGAGGGGCCCCCCTACACAGCTTCCCGGGTAATTGTGCGAACCATGCAGgtaagtaaagatcacagggtaccatagcctatactatattgaattatttt Alignment from Exonerate_protein2genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTAC-CGGGTCATCGTGCGGACCACGCAG aaagccactctccaaccaaccaacaacacttgctgattttttttttccagAACATCAGAACTTCTTTGGGCTAGATGAGGCACTGGGCCCAGTGGCTTTGAGTCTTCAACGGGAGGAAAAAGAGGGCAGCGGAGGGGCCCCCCTACACAGCTTCCCGGGTAATTGTGCGAACCATGCAGgtaagtaaagatcacagggtaccatagcctatactatattgaattatttt Alignment from Exonerate_coding2genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTAC-CGGGTCATCGTGCGGACCACGCAG aaagccactctccaaccaaccaacaacacttgctgattttttttttccagAACATCAGAACTTCTTTGGGCTAGATGAGGCACTGGGCCCAGTGGCTTTGAGTCTTCAACGGGAGGAAAAAGAGGGCAGCGGAGGGGCCCCCCTACACAGCTTCCCGGGTAATTGTGCGAACCATGCAGgtaagtaaagatcacagggtaccatagcctatactatattgaattatttt Alignment from GeneWise AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGC-TACCGGGTCATCGTGCGGACCACGCAG aaagccactctccaaccaaccaacaacacttgctgattttttttttccagAACATCAGAACTTCTTTGGGCTAGATGAGGCACTGGGCCCAGTGGCTTTGAGTCTTCAACGGGAGGAAAAAGAGGGCAGCGGAGGGGCCCCCCTACACAGCTTCCCGGGTAATTGTGCGAACCATGCAGgtaagtaaagatcacagggtaccatagcctatactatattgaattatttt #### Slc18a2_ID12939_7 --> 2 - 0 Original Alignment ctATTCAGCTCTTTGTGCTCCAGCCATCC-CGAGTGCAGCCAGAA ccagtcttgtgtactgccagacgtgggaacttctttgtcactctgggcagctATTCAGCTCTTTGTAATCCAG---TCCCTGTGTACTGCCAGACgtaagaagctgggagtgggaggtaagggccaacaacggacctaggcaagt Alignment from CESAR ctATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA ccagtcttgtgtactgccagacgtgggaacttctttgtcactctgggcagctATTCAGCTCTTTGTAATCCAG--TCCCTGTGTACTGCCAGACgtaagaagctgggagtgggaggtaagggccaacaacggacctaggcaagt Alignment from Spaln_aa2Genome GCCATCCCGAGTGCAGCCAGAA G---TCTTGTGTACTGCCAGACgtgggaacttctttgtcactctgggcagctattcagctctttgtaatccagtccctgtgtactgccagacgtaagaagctgggagtgggaggtaagggccaacaacggacctaggcaagt Alignment from Spaln_nt2Genome CTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA ccagtcttgtgtactgccagacgtgggaacttctttgtcactctgggcagCTATTCAGCTCTTTGTAATCCAGTC--CCTGTGTACTGCCAGACgtaagaagctgggagtgggaggtaagggccaacaacggacctaggcaagt Alignment from Pairagon CTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA ccagtcttgtgtactgccagacgtgggaacttctttgtcactctgggcagCTATTCAGCTCTTTGTAATCCAGTC--CCTGTGTACTGCCAGACgtaagaagctgggagtgggaggtaagggccaacaacggacctaggcaagt Alignment from Exonerate_protein2genome GCCATCCCGAGTGCAGCCAGAA G---TCTTGTGTACTGCCAGACgtgggaacttctttgtcactctgggcagctattcagctctttgtaatccagtccctgtgtactgccagacgtaagaagctgggagtgggaggtaagggccaacaacggacctaggcaagt Alignment from Exonerate_coding2genome ccagtcttgtgtactgccagacgtgggaacttctttgtcactctgggcagctattcagctctttgtaatccagtccctgtgtactgccagacgtaagaagctgggagtgggaggtaagggccaacaacggacctaggcaagt Alignment from GeneWise ccagtcttgtgtactgccagacgtgggaacttctttgtcactctgggcagctattcagctctttgtaatccagtccctgtgtactgccagacgtaagaagctgggagtgggaggtaagggccaacaacggacctaggcaagt #### Slc18a2_ID12940_8 --> 0 - 1 Original Alignment AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATAC-ATTCTCATCGCTGCAg ccaacaacggacctaggcaagtttttccatgtgcacatctctctcatcagAGTCAGAAGGGGACACCTCTTACAACCTTACTGGAGGACCCATACCATTCTGATAGCTGCAggtaagtagcctttaatttattgatggtatgaaaagttctagagggataga Alignment from CESAR AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATAC-ATTCTCATCGCTGCAg ccaacaacggacctaggcaagtttttccatgtgcacatctctctcatcagAGTCAGAAGGGGACACCTCTTACAACCTTACTGGAGGACCCATACCATTCTGATAGCTGCAggtaagtagcctttaatttattgatggtatgaaaagttctagagggataga Alignment from Spaln_aa2Genome AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATAC-ATTCTCATCGCTGCAG ccaacaacggacctaggcaagtttttccatgtgcacatctctctcatcagAGTCAGAAGGGGACACCTCTTACAACCTTACTGGAGGACCCATACcATTCTGATAGCTGCAGgtaagtagcctttaatttattgatggtatgaaaagttctagagggataga Alignment from Spaln_nt2Genome AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATAC-ATTCTCATCGCTGCAG ccaacaacggacctaggcaagtttttccatgtgcacatctctctcatcagAGTCAGAAGGGGACACCTCTTACAACCTTACTGGAGGACCCATACCATTCTGATAGCTGCAGgtaagtagcctttaatttattgatggtatgaaaagttctagagggataga Alignment from Pairagon AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATA-CATTCTCATCGCTGCAG ccaacaacggacctaggcaagtttttccatgtgcacatctctctcatcagAGTCAGAAGGGGACACCTCTTACAACCTTACTGGAGGACCCATACCATTCTGATAGCTGCAGgtaagtagcctttaatttattgatggtatgaaaagttctagagggataga Alignment from Exonerate_protein2genome AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATAC-ATTCTCATCGCTGCAG ccaacaacggacctaggcaagtttttccatgtgcacatctctctcatcagAGTCAGAAGGGGACACCTCTTACAACCTTACTGGAGGACCCATACCATTCTGATAGCTGCAGgtaagtagcctttaatttattgatggtatgaaaagttctagagggataga Alignment from Exonerate_coding2genome AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATAC-ATTCTCATCGCTGCAG ccaacaacggacctaggcaagtttttccatgtgcacatctctctcatcagAGTCAGAAGGGGACACCTCTTACAACCTTACTGGAGGACCCATACCATTCTGATAGCTGCAGgtaagtagcctttaatttattgatggtatgaaaagttctagagggataga Alignment from GeneWise ----GTGCTCCAGCCATCCCGAGTGCAGCCAGAAAGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATAC-ATTCTCATCGCTGCAG ccaacaacggacctagGCAAGTTTTTCCATGTGCACATCTCTCTCATCAGAGTCAGAAGGGGACACCTCTTACAACCTTACTGGAGGACCCATACCATTCTGATAGCTGCAGgtaagtagcctttaatttattgatggtatgaaaagttctagagggataga #### Slc22a12_ID1789_8 --> 2 - 2 Original Alignment ggATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACC-ATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCag tatgaagagaatatcgtacccctcactgcttctcttttgtcatattttagggATGGGGGTCCTTCGCTCAGCCCTGGCTGTGCTGGGGTTGGGCTGCCTAGGGGGCGCCTTCACCTGCATCACCCATTTTCTCTAGTGAACTCTTCCCCACTGTCATCaggtgagagtcattagcccaaggagcacaccttcagattagaaacgtgcccc Alignment from CESAR ggATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACC-ATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCag tatgaagagaatatcgtacccctcactgcttctcttttgtcatattttagggATGGGGGTCCTTCGCTCAGCCCTGGCTGTGCTGGGGTTGGGCTGCCTAGGGGGCGCCTTCACCTGCATCACCCATTTTCTCTAGTGAACTCTTCCCCACTGTCATCaggtgagagtcattagcccaaggagcacaccttcagattagaaacgtgcccc Alignment from Spaln_aa2Genome GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTC-TCCAGTGAGCTCTTCCCCACTGTGATCAG tatgaagagaatatcgtacccctcactgcttctcttttgtcatattttagGGATGGGGGTCCTTCGCTCAGCCCTGGCTGTGCTGGGGTTGGGCTGCCTAGGGGGCGCCTTCACCTGCATCACCCATTTTcTCTAGTGAACTCTTCCCCACTGTCATCAGgtgagagtcattagcccaaggagcacaccttcagattagaaacgtgcccc Alignment from Spaln_nt2Genome GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACC-ATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG tatgaagagaatatcgtacccctcactgcttctcttttgtcatattttagGGATGGGGGTCCTTCGCTCAGCCCTGGCTGTGCTGGGGTTGGGCTGCCTAGGGGGCGCCTTCACCTGCATCACCCATTTTCTCTAGTGAACTCTTCCCCACTGTCATCAGgtgagagtcattagcccaaggagcacaccttcagattagaaacgtgcccc Alignment from Pairagon GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCA-CCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG tatgaagagaatatcgtacccctcactgcttctcttttgtcatattttagGGATGGGGGTCCTTCGCTCAGCCCTGGCTGTGCTGGGGTTGGGCTGCCTAGGGGGCGCCTTCACCTGCATCACCCATTTTCTCTAGTGAACTCTTCCCCACTGTCATCAGgtgagagtcattagcccaaggagcacaccttcagattagaaacgtgcccc Alignment from Exonerate_protein2genome GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACC-ATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG tatgaagagaatatcgtacccctcactgcttctcttttgtcatattttagGGATGGGGGTCCTTCGCTCAGCCCTGGCTGTGCTGGGGTTGGGCTGCCTAGGGGGCGCCTTCACCTGCATCACCCATTTTCTCTAGTGAACTCTTCCCCACTGTCATCAGgtgagagtcattagcccaaggagcacaccttcagattagaaacgtgcccc Alignment from Exonerate_coding2genome GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACC-ATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG tatgaagagaatatcgtacccctcactgcttctcttttgtcatattttagGGATGGGGGTCCTTCGCTCAGCCCTGGCTGTGCTGGGGTTGGGCTGCCTAGGGGGCGCCTTCACCTGCATCACCCATTTTCTCTAGTGAACTCTTCCCCACTGTCATCAGgtgagagtcattagcccaaggagcacaccttcagattagaaacgtgcccc Alignment from GeneWise GGATGGGGGTCCTTCGCTCGGCCCTGGCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACC-ATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG tatgaagagaatatcgtacccctcactgcttctcttttgtcatattttagGGATGGGGGTCCTTCGCTCAGCCCTGGCTGTGCTGGGGTTGGGCTGCCTAGGGGGCGCCTTCACCTGCATCACCCATTTTCTCTAGTGAACTCTTCCCCACTGTCATCAGgtgagagtcattagcccaaggagcacaccttcagattagaaacgtgcccc #### Slc22a12_ID1791_6 --> 0 - 2 Original Alignment GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGAC-AAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCtg acctgggggtggacctagagacttggtgccgttttttatcttcttggtagGTACTGCGGTCAGCTATGGACAAGGAACCAAGCAGGGACCCAGGCTGGTGCCAGTCTTGGCACTTTACTCCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCctgtgagcgcctctacctaaaactgtcagtccagtggatgtcaccctttccc Alignment from CESAR GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGAC-AAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCtg acctgggggtggacctagagacttggtgccgttttttatcttcttggtagGTACTGCGGTCAGCTATGGACAAGGAACCAAGCAGGGACCCAGGCTGGTGCCAGTCTTGGCACTTTACTCCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCctgtgagcgcctctacctaaaactgtcagtccagtggatgtcaccctttccc Alignment from Spaln_aa2Genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGAC-AAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG acctgggggtggacctagagacttggtgccgttttttatcttcttggtagGTACTGCGGTCAGCTATGGACAAGGAACCAAGCAGGGACcCAGGCTGGTGCCAGTCTTGGCACTTTACTCCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCCTgtgagcgcctctacctaaaactgtcagtccagtggatgtcaccctttccc Alignment from Spaln_nt2Genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAG-CTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG acctgggggtggacctagagacttggtgccgttttttatcttcttggtagGTACTGCGGTCAGCTATGGACAAGGAACCAAGCAGGGACCCAGGCTGGTGCCAGTCTTGGCACTTTACTCCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCCTgtgagcgcctctacctaaaactgtcagtccagtggatgtcaccctttccc Alignment from Pairagon GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGA-CAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG acctgggggtggacctagagacttggtgccgttttttatcttcttggtagGTACTGCGGTCAGCTATGGACAAGGAACCAAGCAGGGACCCAGGCTGGTGCCAGTCTTGGCACTTTACTCCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCCTgtgagcgcctctacctaaaactgtcagtccagtggatgtcaccctttccc Alignment from Exonerate_protein2genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGAC-AAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG acctgggggtggacctagagacttggtgccgttttttatcttcttggtagGTACTGCGGTCAGCTATGGACAAGGAACCAAGCAGGGACCCAGGCTGGTGCCAGTCTTGGCACTTTACTCCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCCTgtgagcgcctctacctaaaactgtcagtccagtggatgtcaccctttccc Alignment from Exonerate_coding2genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGAC-AAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG acctgggggtggacctagagacttggtgccgttttttatcttcttggtagGTACTGCGGTCAGCTATGGACAAGGAACCAAGCAGGGACCCAGGCTGGTGCCAGTCTTGGCACTTTACTCCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCCTgtgagcgcctctacctaaaactgtcagtccagtggatgtcaccctttccc Alignment from GeneWise GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGAC-AAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG acctgggggtggacctagagacttggtgccgttttttatcttcttggtagGTACTGCGGTCAGCTATGGACAAGGAACCAAGCAGGGACCCAGGCTGGTGCCAGTCTTGGCACTTTACTCCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCCTgtgagcgcctctacctaaaactgtcagtccagtggatgtcaccctttccc #### Slc22a12_ID1794_3 --> 1 - 1 Original Alignment gTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGC-CTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCt gtcacccagagcttttgttgctacccagtgatatgtctttttttcaaaaggTTTGGGCGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCGTGTCTGGCACAGCTGCTGCCTTCATGCCCACCTTCCCGCTGCACTGTCCTGTTTTCCTTCCTGCTGGCATCTTCAGTGGCAGGCATCATGATGAACACAGCCGGTCTCcgtagaacccattattagtgtgaggttgtaaaggctactgctagacctgga Alignment from CESAR gTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGC-CTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCt gtcacccagagcttttgttgctacccagtgatatgtctttttttcaaaaggTTTGGGCGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCGTGTCTGGCACAGCTGCTGCCTTCATGCCCACCTTCCCGCTGCACTGTCCTGTTTTCCTTCCTGCTGGCATCTTCAGTGGCAGGCATCATGATGAACACAGCCGGTCTCcgtagaacccattattagtgtgaggttgtaaaggctactgctagacctgga Alignment from Spaln_aa2Genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGC-CTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT gtcacccagagcttttgttgctacccagtgatatgtctttttttcaaaagGTTTGGGCGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCGTGTCTGGCACAGCTGCTGCCTTCATGCCCACCTTCCCGCTGCACTGTcCTGTTTTCCTTCCTGCTGGCATCTTCAGTGGCAGGCATCATGATGAACACAGCCGGTCTCCgtagaacccattattagtgtgaggttgtaaaggctactgctagacctgga Alignment from Spaln_nt2Genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTG-CCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT gtcacccagagcttttgttgctacccagtgatatgtctttttttcaaaagGTTTGGGCGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCGTGTCTGGCACAGCTGCTGCCTTCATGCCCACCTTCCCGCTGCACTGTCCTGTTTTCCTTCCTGCTGGCATCTTCAGTGGCAGGCATCATGATGAACACAGCCGGTCTCCgtagaacccattattagtgtgaggttgtaaaggctactgctagacctgga Alignment from Pairagon GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTG-CCTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT gtcacccagagcttttgttgctacccagtgatatgtctttttttcaaaagGTTTGGGCGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCGTGTCTGGCACAGCTGCTGCCTTCATGCCCACCTTCCCGCTGCACTGTCCTGTTTTCCTTCCTGCTGGCATCTTCAGTGGCAGGCATCATGATGAACACAGCCGGTCTCCgtagaacccattattagtgtgaggttgtaaaggctactgctagacctgga Alignment from Exonerate_protein2genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGC-CTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT gtcacccagagcttttgttgctacccagtgatatgtctttttttcaaaagGTTTGGGCGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCGTGTCTGGCACAGCTGCTGCCTTCATGCCCACCTTCCCGCTGCACTGTCCTGTTTTCCTTCCTGCTGGCATCTTCAGTGGCAGGCATCATGATGAACACAGCCGGTCTCCgtagaacccattattagtgtgaggttgtaaaggctactgctagacctgga Alignment from Exonerate_coding2genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGC-CTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT gtcacccagagcttttgttgctacccagtgatatgtctttttttcaaaagGTTTGGGCGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCGTGTCTGGCACAGCTGCTGCCTTCATGCCCACCTTCCCGCTGCACTGTCCTGTTTTCCTTCCTGCTGGCATCTTCAGTGGCAGGCATCATGATGAACACAGCCGGTCTCCgtagaacccattattagtgtgaggttgtaaaggctactgctagacctgga Alignment from GeneWise GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGC-CTGTTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT gtcacccagagcttttgttgctacccagtgatatgtctttttttcaaaagGTTTGGGCGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCCGTGTCTGGCACAGCTGCTGCCTTCATGCCCACCTTCCCGCTGCACTGTCCTGTTTTCCTTCCTGCTGGCATCTTCAGTGGCAGGCATCATGATGAACACAGCCGGTCTCCgtagaacccattattagtgtgaggttgtaaaggctactgctagacctgga #### Slc22a20_ID1351_2 --> 0 - 2 Original Alignment TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGT-GACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACag gtccaagagtaatgacaagctaagcctacatcttgtctcttctgttccagTGGGACCTGGTGTGTGAGGCCCGCACTCTTCATCGACCTGGCTCAATCTATCTACATGTCTGGAGTGTTGGTCGGAGCTGCCTTGTTCGGTTGTCTAGCAGACaggtgagtcttttgggtaccaactatatgttcactctcatactgtcatttct Alignment from CESAR TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGT-GACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACag gtccaagagtaatgacaagctaagcctacatcttgtctcttctgttccagTGGGACCTGGTGTGTGAGGCCCGCACTCTTCATCGACCTGGCTCAATCTATCTACATGTCTGGAGTGTTGGTCGGAGCTGCCTTGTTCGGTTGTCTAGCAGACaggtgagtcttttgggtaccaactatatgttcactctcatactgtcatttct Alignment from Spaln_aa2Genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGT-GACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG gtccaagagtaatgacaagctaagcctacatcttgtctcttctgttccagTGGGACCTGGTGTGTGAGGCCCGCACTCTTCATcGACCTGGCTCAATCTATCTACATGTCTGGAGTGTTGGTCGGAGCTGCCTTGTTCGGTTGTCTAGCAGACAGgtgagtcttttgggtaccaactatatgttcactctcatactgtcatttct Alignment from Spaln_nt2Genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGT-GACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG gtccaagagtaatgacaagctaagcctacatcttgtctcttctgttccagTGGGACCTGGTGTGTGAGGCCCGCACTCTTCATCGACCTGGCTCAATCTATCTACATGTCTGGAGTGTTGGTCGGAGCTGCCTTGTTCGGTTGTCTAGCAGACAGgtgagtcttttgggtaccaactatatgttcactctcatactgtcatttct Alignment from Pairagon TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGT-GACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG gtccaagagtaatgacaagctaagcctacatcttgtctcttctgttccagTGGGACCTGGTGTGTGAGGCCCGCACTCTTCATCGACCTGGCTCAATCTATCTACATGTCTGGAGTGTTGGTCGGAGCTGCCTTGTTCGGTTGTCTAGCAGACAGgtgagtcttttgggtaccaactatatgttcactctcatactgtcatttct Alignment from Exonerate_protein2genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGT-GACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG gtccaagagtaatgacaagctaagcctacatcttgtctcttctgttccagTGGGACCTGGTGTGTGAGGCCCGCACTCTTCATCGACCTGGCTCAATCTATCTACATGTCTGGAGTGTTGGTCGGAGCTGCCTTGTTCGGTTGTCTAGCAGACAGgtgagtcttttgggtaccaactatatgttcactctcatactgtcatttct Alignment from Exonerate_coding2genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGT-GACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG gtccaagagtaatgacaagctaagcctacatcttgtctcttctgttccagTGGGACCTGGTGTGTGAGGCCCGCACTCTTCATCGACCTGGCTCAATCTATCTACATGTCTGGAGTGTTGGTCGGAGCTGCCTTGTTCGGTTGTCTAGCAGACAGgtgagtcttttgggtaccaactatatgttcactctcatactgtcatttct Alignment from GeneWise TGGGACCTGGTGTGTGAGGCCCGCACCCTT-CGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG gtccaagagtaatgacaagctaagcctacatcttgtctcttctgttccagTGGGACCTGGTGTGTGAGGCCCGCACTCTTCATCGACCTGGCTCAATCTATCTACATGTCTGGAGTGTTGGTCGGAGCTGCCTTGTTCGGTTGTCTAGCAGACAGgtgagtcttttgggtaccaactatatgttcactctcatactgtcatttct #### Slc25a45_ID1292_3 --> 0 - 0 Original Alignment GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTA-GTCAAGACTTACCGCCATGAGTCA tgacctggttgccattattggagcagcttccttttgcttgtatcgggcagGTACGGTTACAGACCCAAAGCACGTATCGGGGCATTGTGGACTGTGTACGCTAAGACATATCGCCATGAGTCAgtaggttgcccacttattagtggtagagagagtcatcagagcaggtgggg Alignment from CESAR GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTA-GTCAAGACTTACCGCCATGAGTCA tgacctggttgccattattggagcagcttccttttgcttgtatcgggcagGTACGGTTACAGACCCAAAGCACGTATCGGGGCATTGTGGACTGTGTACGCTAAGACATATCGCCATGAGTCAgtaggttgcccacttattagtggtagagagagtcatcagagcaggtgggg Alignment from Spaln_aa2Genome GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTA-GTCAAGACTTACCGCCATGAGTCA tgacctggttgccattattggagcagcttccttttgcttgtatcgggcagGTACGGTTACAGACCCAAAGCACGTATCGGGGCATTGTGGACTGTGTAcGCTAAGACATATCGCCATGAGTCAgtaggttgcccacttattagtggtagagagagtcatcagagcaggtgggg Alignment from Spaln_nt2Genome GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTC-AAGACTTACCGCCATGAGTCA tgacctggttgccattattggagcagcttccttttgcttgtatcgggcagGTACGGTTACAGACCCAAAGCACGTATCGGGGCATTGTGGACTGTGTACGCTAAGACATATCGCCATGAGTCAgtaggttgcccacttattagtggtagagagagtcatcagagcaggtgggg Alignment from Pairagon GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTA-GTCAAGACTTACCGCCATGAGTCA tgacctggttgccattattggagcagcttccttttgcttgtatcgggcagGTACGGTTACAGACCCAAAGCACGTATCGGGGCATTGTGGACTGTGTACGCTAAGACATATCGCCATGAGTCAgtaggttgcccacttattagtggtagagagagtcatcagagcaggtgggg Alignment from Exonerate_protein2genome GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTA-GTCAAGACTTACCGCCATGAGTCA tgacctggttgccattattggagcagcttccttttgcttgtatcgggcagGTACGGTTACAGACCCAAAGCACGTATCGGGGCATTGTGGACTGTGTACGCTAAGACATATCGCCATGAGTCAgtaggttgcccacttattagtggtagagagagtcatcagagcaggtgggg Alignment from Exonerate_coding2genome GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTA-GTCAAGACTTACCGCCATGAGTCA tgacctggttgccattattggagcagcttccttttgcttgtatcgggcagGTACGGTTACAGACCCAAAGCACGTATCGGGGCATTGTGGACTGTGTACGCTAAGACATATCGCCATGAGTCAgtaggttgcccacttattagtggtagagagagtcatcagagcaggtgggg Alignment from GeneWise GTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTA-GTCAAGACTTACCGCCATGAGTCA tgacctggttgccattattggagcagcttccttttgcttgtatcgggcagGTACGGTTACAGACCCAAAGCACGTATCGGGGCATTGTGGACTGTGTACGCTAAGACATATCGCCATGAGTCAgtaggttgcccacttattagtggtagagagagtcatcagagcaggtgggg #### Slc25a45_ID1293_4 --> 0 - 0 Original Alignment GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCC-AGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG ctcactagagctagatttgggacacaaattaccccgtttcctcccctcagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTCACTGTAGCCCTGGTGAACTCTGTCCTGTTTGGAGTGTACAGCAACACACTCCTGGCACTAACAGCCACGTCTCATCAGGAGCGCCAGGCCCAGCCACCCAGCCACACAAACATCTTTATAGCAGGTTGTACCGGGGGCCTCCTGCAGgtaaaagtatcattgttgctggatagctgaaatacttttagctcattgaa Alignment from CESAR GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCC-AGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG ctcactagagctagatttgggacacaaattaccccgtttcctcccctcagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTCACTGTAGCCCTGGTGAACTCTGTCCTGTTTGGAGTGTACAGCAACACACTCCTGGCACTAACAGCCACGTCTCATCAGGAGCGCCAGGCCCAGCCACCCAGCCACACAAACATCTTTATAGCAGGTTGTACCGGGGGCCTCCTGCAGgtaaaagtatcattgttgctggatagctgaaatacttttagctcattgaa Alignment from Spaln_aa2Genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCC-AGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG ctcactagagctagatttgggacacaaattaccccgtttcctcccctcagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTcACTGTAGCCCTGGTGAACTCTGTCCTGTTTGGAGTGTACAGCAACACACTCCTGGCACTAACAGCCACGTCTCATCAGGAGCGCCAGGCCCAGCCACCCAGCCACACAAACATCTTTATAGCAGGTTGTACCGGGGGCCTCCTGCAGgtaaaagtatcattgttgctggatagctgaaatacttttagctcattgaa Alignment from Spaln_nt2Genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGC-CAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG ctcactagagctagatttgggacacaaattaccccgtttcctcccctcagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTCACTGTAGCCCTGGTGAACTCTGTCCTGTTTGGAGTGTACAGCAACACACTCCTGGCACTAACAGCCACGTCTCATCAGGAGCGCCAGGCCCAGCCACCCAGCCACACAAACATCTTTATAGCAGGTTGTACCGGGGGCCTCCTGCAGgtaaaagtatcattgttgctggatagctgaaatacttttagctcattgaa Alignment from Pairagon GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGC-CAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG ctcactagagctagatttgggacacaaattaccccgtttcctcccctcagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTCACTGTAGCCCTGGTGAACTCTGTCCTGTTTGGAGTGTACAGCAACACACTCCTGGCACTAACAGCCACGTCTCATCAGGAGCGCCAGGCCCAGCCACCCAGCCACACAAACATCTTTATAGCAGGTTGTACCGGGGGCCTCCTGCAGgtaaaagtatcattgttgctggatagctgaaatacttttagctcattgaa Alignment from Exonerate_protein2genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCC-AGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG ctcactagagctagatttgggacacaaattaccccgtttcctcccctcagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTCACTGTAGCCCTGGTGAACTCTGTCCTGTTTGGAGTGTACAGCAACACACTCCTGGCACTAACAGCCACGTCTCATCAGGAGCGCCAGGCCCAGCCACCCAGCCACACAAACATCTTTATAGCAGGTTGTACCGGGGGCCTCCTGCAGgtaaaagtatcattgttgctggatagctgaaatacttttagctcattgaa Alignment from Exonerate_coding2genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCC-AGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG ctcactagagctagatttgggacacaaattaccccgtttcctcccctcagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTCACTGTAGCCCTGGTGAACTCTGTCCTGTTTGGAGTGTACAGCAACACACTCCTGGCACTAACAGCCACGTCTCATCAGGAGCGCCAGGCCCAGCCACCCAGCCACACAAACATCTTTATAGCAGGTTGTACCGGGGGCCTCCTGCAGgtaaaagtatcattgttgctggatagctgaaatacttttagctcattgaa Alignment from GeneWise GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCC-AGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG ctcactagagctagatttgggacacaaattaccccgtttcctcccctcagGTTCTGGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTCACTGTAGCCCTGGTGAACTCTGTCCTGTTTGGAGTGTACAGCAACACACTCCTGGCACTAACAGCCACGTCTCATCAGGAGCGCCAGGCCCAGCCACCCAGCCACACAAACATCTTTATAGCAGGTTGTACCGGGGGCCTCCTGCAGgtaaaagtatcattgttgctggatagctgaaatacttttagctcattgaa #### Slc3a2_ID2302_7 --> 1 - 0 Original Alignment gCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAAT-GCCACTGGCAGCCAATGGTGCAGCTGGAGT actctgctctcttattcttcactttgtatgtgggttttttgttccctcagaCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAGATTGTCAATATACTTGAGTCCACCAGTGACCTGCTGTTGACTAGCTCCTACCTTTCAAATTCCACATACACTGGGGAACGTACTGAATCTCTAGTAACTAGCTTTTTGAATCGCGACTGGCAGCCAATGGTGCAGCTGGAGTgtgatgggcatgatggtaggtctaggcctggaagtgtaggtgggaagtgg Alignment from CESAR gCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAAT-GCCACTGGCAGCCAATGGTGCAGCTGGAGT actctgctctcttattcttcactttgtatgtgggttttttgttccctcagaCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAGATTGTCAATATACTTGAGTCCACCAGTGACCTGCTGTTGACTAGCTCCTACCTTTCAAATTCCACATACACTGGGGAACGTACTGAATCTCTAGTAACTAGCTTTTTGAATCGCGACTGGCAGCCAATGGTGCAGCTGGAGTgtgatgggcatgatggtaggtctaggcctggaagtgtaggtgggaagtgg Alignment from Spaln_aa2Genome GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAAT-GCCACTGGCAGCCAATGGTGCAGCTGGAGT actctgctctcttattcttcactttgtatgtgggttttttgttccctcagACTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAGATTGTCAATATACTTGAGTCCACCAGTGACCTGCTGTTGACTAGCTCCTACCTTTCAAATTCCACATACACTGGGGAACGTACTGAATCTCTAGTAACTAGCTTTTTGAATcGCGACTGGCAGCCAATGGTGCAGCTGGAGTgtgatgggcatgatggtaggtctaggcctggaagtgtaggtgggaagtgg Alignment from Spaln_nt2Genome GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAAT-GCCACTGGCAGCCAATGGTGCAGCTGGAGT actctgctctcttattcttcactttgtatgtgggttttttgttccctcagACTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAGATTGTCAATATACTTGAGTCCACCAGTGACCTGCTGTTGACTAGCTCCTACCTTTCAAATTCCACATACACTGGGGAACGTACTGAATCTCTAGTAACTAGCTTTTTGAATCGCGACTGGCAGCCAATGGTGCAGCTGGAGTgtgatgggcatgatggtaggtctaggcctggaagtgtaggtgggaagtgg Alignment from Pairagon GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAAT-GCCACTGGCAGCCAATGGTGCAGCTGGAGT actctgctctcttattcttcactttgtatgtgggttttttgttccctcagACTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAGATTGTCAATATACTTGAGTCCACCAGTGACCTGCTGTTGACTAGCTCCTACCTTTCAAATTCCACATACACTGGGGAACGTACTGAATCTCTAGTAACTAGCTTTTTGAATCGCGACTGGCAGCCAATGGTGCAGCTGGAGTgtgatgggcatgatggtaggtctaggcctggaagtgtaggtgggaagtgg Alignment from Exonerate_protein2genome GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAAT-GCCACTGGCAGCCAATGGTGCAGCTGGAGT actctgctctcttattcttcactttgtatgtgggttttttgttccctcagACTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAGATTGTCAATATACTTGAGTCCACCAGTGACCTGCTGTTGACTAGCTCCTACCTTTCAAATTCCACATACACTGGGGAACGTACTGAATCTCTAGTAACTAGCTTTTTGAATCGCGACTGGCAGCCAATGGTGCAGCTGGAGTgtgatgggcatgatggtaggtctaggcctggaagtgtaggtgggaagtgg Alignment from Exonerate_coding2genome GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAAT-GCCACTGGCAGCCAATGGTGCAGCTGGAGT actctgctctcttattcttcactttgtatgtgggttttttgttccctcagACTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAGATTGTCAATATACTTGAGTCCACCAGTGACCTGCTGTTGACTAGCTCCTACCTTTCAAATTCCACATACACTGGGGAACGTACTGAATCTCTAGTAACTAGCTTTTTGAATCGCGACTGGCAGCCAATGGTGCAGCTGGAGTgtgatgggcatgatggtaggtctaggcctggaagtgtaggtgggaagtgg Alignment from GeneWise GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTACCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAAT-GCCACTGGCAGCCAATGGTGCAGCTGGAGT actctgctctcttattcttcactttgtatgtgggttttttgttccctcagACTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAGATTGTCAATATACTTGAGTCCACCAGTGACCTGCTGTTGACTAGCTCCTACCTTTCAAATTCCACATACACTGGGGAACGTACTGAATCTCTAGTAACTAGCTTTTTGAATCGCGACTGGCAGCCAATGGTGCAGCTGGAGTgtgatgggcatgatggtaggtctaggcctggaagtgtaggtgggaagtgg #### Slit1_ID8223_16 --> 2 - 2 Original Alignment ggACAGAGGACTACCACCTGAACAGCGAGTGTACCAGCGACGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTGGTGGAGTGCTCCAGCCTGAAACTCTCTAAGATCCCTGAGCGAATC-CCCCAGTCCACGACTGAGct ggggagaacttggggaccacaactgcttaggcttgttcaccaccttccagggACAGAAGATTACCACCTGAACAGTGAGTGCACCAGTGATGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTAGTGGAGTGCTCTAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCCAATCCACAACTGAGctgtaatttcagtgggcccacccaactcccacctccattcctgtgccttgta Alignment from CESAR ggACAGAGGACTACCACCTGAACAGCGAGTGTACCAGCGACGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTGGTGGAGTGCTCCAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCC-CAGTCCACGACTGAGct ggggagaacttggggaccacaactgcttaggcttgttcaccaccttccagggACAGAAGATTACCACCTGAACAGTGAGTGCACCAGTGATGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTAGTGGAGTGCTCTAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCCAATCCACAACTGAGctgtaatttcagtgggcccacccaactcccacctccattcctgtgccttgta Alignment from Spaln_aa2Genome GGACAGAGGACTACCACCTGAACAGCGAGTGTACCAGCGACGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTGGTGGAGTGCTCCAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCC-CAGTCCACGACTGAGCT ggggagaacttggggaccacaactgcttaggcttgttcaccaccttccagGGACAGAAGATTACCACCTGAACAGTGAGTGCACCAGTGATGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTAGTGGAGTGCTCTAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCcCAATCCACAACTGAGCTgtaatttcagtgggcccacccaactcccacctccattcctgtgccttgta Alignment from Spaln_nt2Genome GGACAGAGGACTACCACCTGAACAGCGAGTGTACCAGCGACGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTGGTGGAGTGCTCCAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCC-AGTCCACGACTGAGCT ggggagaacttggggaccacaactgcttaggcttgttcaccaccttccagGGACAGAAGATTACCACCTGAACAGTGAGTGCACCAGTGATGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTAGTGGAGTGCTCTAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCCAATCCACAACTGAGCTgtaatttcagtgggcccacccaactcccacctccattcctgtgccttgta Alignment from Pairagon GGACAGAGGACTACCACCTGAACAGCGAGTGTACCAGCGACGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTGGTGGAGTGCTCCAGCCTGAAACTCTCTAAGATCCCTGAGCGAAT-CCCCCAGTCCACGACTGAGCT ggggagaacttggggaccacaactgcttaggcttgttcaccaccttccagGGACAGAAGATTACCACCTGAACAGTGAGTGCACCAGTGATGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTAGTGGAGTGCTCTAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCCAATCCACAACTGAGCTgtaatttcagtgggcccacccaactcccacctccattcctgtgccttgta Alignment from Exonerate_protein2genome GGACAGAGGACTACCACCTGAACAGCGAGTGTACCAGCGACGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTGGTGGAGTGCTCCAGCCTGAAACTCTCTAAGATCCCTGAGCGAATC-CCCCAGTCCACGACTGAGCT ggggagaacttggggaccacaactgcttaggcttgttcaccaccttccagGGACAGAAGATTACCACCTGAACAGTGAGTGCACCAGTGATGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTAGTGGAGTGCTCTAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCCAATCCACAACTGAGCTgtaatttcagtgggcccacccaactcccacctccattcctgtgccttgta Alignment from Exonerate_coding2genome AGAGCAGTACTTCATTCCAGGGACAGAGGACTACCACCTGAACAGCGAGTGTACCAGCGACGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTGGTGGAGTGCTCCAGCCTGAAACTCTCTAAGATCCCTGAGCGAATC-CCCCAGTCCACGACTGAGCT ggggagaacttggggaccacaactgcttagGCTTGTTCACCACCTTCCAGGGACAGAAGATTACCACCTGAACAGTGAGTGCACCAGTGATGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTAGTGGAGTGCTCTAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCCAATCCACAACTGAGCTgtaatttcagtgggcccacccaactcccacctccattcctgtgccttgta Alignment from GeneWise AGAGCAGTACTTCATTCCAGGGACAGAGGACTACCACCTGAACAGCGAGTGTACCAGCGACGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTGGTGGAGTGCTCCAGCCTGAAACTCTCTAAGATCCCTGAGCGA-ATCCCCCAGTCCACGACTGAGCT ggggagaacttggggaccacaactgcttagGCTTGTTCACCACCTTCCAGGGACAGAAGATTACCACCTGAACAGTGAGTGCACCAGTGATGTGGCCTGCCCACACAAGTGCCGTTGTGAGGCCAGTGTAGTGGAGTGCTCTAGCCTGAAACTCTCTAAGATCCCTGAGCGAATCCCCCCAATCCACAACTGAGCTgtaatttcagtgggcccacccaactcccacctccattcctgtgccttgta #### Slit1_ID8229_10 --> 1 - 2 Original Alignment cCGCCTGGAGTTGAACGGTATCAAATCCATC-CCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGat cgttgctaagggggaccctccagcttccatggccttaactatcaacccagtCACTTGGAGTTGAATGGAATCAGATCTATCCCCACCGAGAGCCTTCTCTCCCTACAGAAAGCTGCGGAGGatgtaagaaggctttggcagcctcaaaggaagagtctggggctgccttcctg Alignment from CESAR cCGCCTGGAGTTGAACGGTATCAAATCCATC-CCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGat cgttgctaagggggaccctccagcttccatggccttaactatcaacccagtCACTTGGAGTTGAATGGAATCAGATCTATCCCCACCGAGAGCCTTCTCTCCCTACAGAAAGCTGCGGAGGatgtaagaaggctttggcagcctcaaaggaagagtctggggctgccttcctg Alignment from Spaln_aa2Genome CCGCCTGGAGTTGAACGGTATCAAATCCATC-CCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT cgttgctaagggggaccctccagcttccatggccttaactatcaacccagTCACTTGGAGTTGAATGGAATCAGATCTATCcCCACCGAGAGCCTTCTCTCCCTACAGAAAGCTGCGGAGGATgtaagaaggctttggcagcctcaaaggaagagtctggggctgccttcctg Alignment from Spaln_nt2Genome CCGCCTGGAGTTGAACGGTATCAAATCCATCCCACCCG-GAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT cgttgctaagggggaccctccagcttccatggccttaactatcaacccagTCACTTGGAGTTGAATGGAATCAGATCTATCCCCACCGAGAGCCTTCTCTCCCTACAGAAAGCTGCGGAGGATgtaagaaggctttggcagcctcaaaggaagagtctggggctgccttcctg Alignment from Pairagon CCGCCTGGAGTTGAACGGTATCAAATCCAT-CCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT cgttgctaagggggaccctccagcttccatggccttaactatcaacccagTCACTTGGAGTTGAATGGAATCAGATCTATCCCCACCGAGAGCCTTCTCTCCCTACAGAAAGCTGCGGAGGATgtaagaaggctttggcagcctcaaaggaagagtctggggctgccttcctg Alignment from Exonerate_protein2genome CCGCCTGGAGTTGAACGGTATCAAATCCATC-CCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT cgttgctaagggggaccctccagcttccatggccttaactatcaacccagTCACTTGGAGTTGAATGGAATCAGATCTATCCCCACCGAGAGCCTTCTCTCCCTACAGAAAGCTGCGGAGGATgtaagaaggctttggcagcctcaaaggaagagtctggggctgccttcctg Alignment from Exonerate_coding2genome CCGCCTGGAGTTGAACGGTATCAAATCCATC-CCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT cgttgctaagggggaccctccagcttccatggccttaactatcaacccagTCACTTGGAGTTGAATGGAATCAGATCTATCCCCACCGAGAGCCTTCTCTCCCTACAGAAAGCTGCGGAGGATgtaagaaggctttggcagcctcaaaggaagagtctggggctgccttcctg Alignment from GeneWise CCGCCTGGAGTTGAACGGTATCAAATCC-ATCCCACCCGGAGCCTTCTCTCCCTACAGAAAGCTGCGCAGGAT cgttgctaagggggaccctccagcttccatggccttaactatcaacccagTCACTTGGAGTTGAATGGAATCAGATCTATCCCCACCGAGAGCCTTCTCTCCCTACAGAAAGCTGCGGAGGATgtaagaaggctttggcagcctcaaaggaagagtctggggctgccttcctg #### Smc3_ID11318_6 --> 0 - 2 Original Alignment ATTGATAAAGAGGAA-GTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCac tttgttcaggttggccatctgggctctcaccgtagcctccttactttcagATTGATAAAGAGGAACGTTTCACTTCGAAGAGTTATTGGTGCTAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCacgtaacaatttgtttttgctcatagtgtgttacagatgttcatgaaaacat Alignment from CESAR ATTGATAAAGAGGAA-GTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCac tttgttcaggttggccatctgggctctcaccgtagcctccttactttcagATTGATAAAGAGGAACGTTTCACTTCGAAGAGTTATTGGTGCTAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCacgtaacaatttgtttttgctcatagtgtgttacagatgttcatgaaaacat Alignment from Spaln_aa2Genome ATTGATAAAGAGGAA-GTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC tttgttcaggttggccatctgggctctcaccgtagcctccttactttcagATTGATAAAGAGGAAcGTTTCACTTCGAAGAGTTATTGGTGCTAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCACgtaacaatttgtttttgctcatagtgtgttacagatgttcatgaaaacat Alignment from Spaln_nt2Genome ATTGATAAAGAGGAA-GTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC tttgttcaggttggccatctgggctctcaccgtagcctccttactttcagATTGATAAAGAGGAACGTTTCACTTCGAAGAGTTATTGGTGCTAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCACgtaacaatttgtttttgctcatagtgtgttacagatgttcatgaaaacat Alignment from Pairagon ATTGATAAAGAGGAA-GTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC tttgttcaggttggccatctgggctctcaccgtagcctccttactttcagATTGATAAAGAGGAACGTTTCACTTCGAAGAGTTATTGGTGCTAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCACgtaacaatttgtttttgctcatagtgtgttacagatgttcatgaaaacat Alignment from Exonerate_protein2genome ATTGATAAAGAGGAA-GTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC tttgttcaggttggccatctgggctctcaccgtagcctccttactttcagATTGATAAAGAGGAACGTTTCACTTCGAAGAGTTATTGGTGCTAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCACgtaacaatttgtttttgctcatagtgtgttacagatgttcatgaaaacat Alignment from Exonerate_coding2genome ATTGATAAAGAGGAA-GTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC tttgttcaggttggccatctgggctctcaccgtagcctccttactttcagATTGATAAAGAGGAACGTTTCACTTCGAAGAGTTATTGGTGCTAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCACgtaacaatttgtttttgctcatagtgtgttacagatgttcatgaaaacat Alignment from GeneWise GAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC tttgttcaggttggccatctgggctctcaccgtagcctccttactttcagattgataaagAGGAACGTTTCACTTCGAAGAGTTATTGGTGCTAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCACgtaacaatttgtttttgctcatagtgtgttacagatgttcatgaaaacat #### Smc3_ID11323_11 --> 0 - 0 Original Alignment GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAA-GAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG aaacctgcaaaccctatgttgacttgccactttgtgtacttctttgtcagGATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAACGAAGAAAAAGAACAGCTCAGTGCTGAAAGACAAGAGCGGATTAAGCAAAGGACAAAGTTGGAGCTTAAGGCCAAAGATTTACAAGTTGAGCTGGCTGGCAACAGCGAACAGCGGgtgagtcactactgcaaatgaaagctgtggtggatttcagtctagtaaag Alignment from CESAR GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAA-GAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG aaacctgcaaaccctatgttgacttgccactttgtgtacttctttgtcagGATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAACGAAGAAAAAGAACAGCTCAGTGCTGAAAGACAAGAGCGGATTAAGCAAAGGACAAAGTTGGAGCTTAAGGCCAAAGATTTACAAGTTGAGCTGGCTGGCAACAGCGAACAGCGGgtgagtcactactgcaaatgaaagctgtggtggatttcagtctagtaaag Alignment from Spaln_aa2Genome GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAA-GAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG aaacctgcaaaccctatgttgacttgccactttgtgtacttctttgtcagGATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAcGAAGAAAAAGAACAGCTCAGTGCTGAAAGACAAGAGCGGATTAAGCAAAGGACAAAGTTGGAGCTTAAGGCCAAAGATTTACAAGTTGAGCTGGCTGGCAACAGCGAACAGCGGgtgagtcactactgcaaatgaaagctgtggtggatttcagtctagtaaag Alignment from Spaln_nt2Genome GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATG-AAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG aaacctgcaaaccctatgttgacttgccactttgtgtacttctttgtcagGATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAACGAAGAAAAAGAACAGCTCAGTGCTGAAAGACAAGAGCGGATTAAGCAAAGGACAAAGTTGGAGCTTAAGGCCAAAGATTTACAAGTTGAGCTGGCTGGCAACAGCGAACAGCGGgtgagtcactactgcaaatgaaagctgtggtggatttcagtctagtaaag Alignment from Pairagon GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAA-GAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG aaacctgcaaaccctatgttgacttgccactttgtgtacttctttgtcagGATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAACGAAGAAAAAGAACAGCTCAGTGCTGAAAGACAAGAGCGGATTAAGCAAAGGACAAAGTTGGAGCTTAAGGCCAAAGATTTACAAGTTGAGCTGGCTGGCAACAGCGAACAGCGGgtgagtcactactgcaaatgaaagctgtggtggatttcagtctagtaaag Alignment from Exonerate_protein2genome GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAA-GAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG aaacctgcaaaccctatgttgacttgccactttgtgtacttctttgtcagGATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAACGAAGAAAAAGAACAGCTCAGTGCTGAAAGACAAGAGCGGATTAAGCAAAGGACAAAGTTGGAGCTTAAGGCCAAAGATTTACAAGTTGAGCTGGCTGGCAACAGCGAACAGCGGgtgagtcactactgcaaatgaaagctgtggtggatttcagtctagtaaag Alignment from Exonerate_coding2genome GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAA-GAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG aaacctgcaaaccctatgttgacttgccactttgtgtacttctttgtcagGATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAACGAAGAAAAAGAACAGCTCAGTGCTGAAAGACAAGAGCGGATTAAGCAAAGGACAAAGTTGGAGCTTAAGGCCAAAGATTTACAAGTTGAGCTGGCTGGCAACAGCGAACAGCGGgtgagtcactactgcaaatgaaagctgtggtggatttcagtctagtaaag Alignment from GeneWise GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATG-AAAGAAGAAAAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG aaacctgcaaaccctatgttgacttgccactttgtgtacttctttgtcagGATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAACGAAGAAAAAGAACAGCTCAGTGCTGAAAGACAAGAGCGGATTAAGCAAAGGACAAAGTTGGAGCTTAAGGCCAAAGATTTACAAGTTGAGCTGGCTGGCAACAGCGAACAGCGGgtgagtcactactgcaaatgaaagctgtggtggatttcagtctagtaaag #### Smc3_ID11337_25 --> 0 - 0 Original Alignment TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTC-TCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG agaaactcacttgctgtggccagtaattcctgtgcctcctgtgtttttagTTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCGTGTGAACAAAAAGGCACTTGATCAGCTTGTGAACTTTCTCTGAGCAGAAGGAAAAGTTGATAAAGCGGCAAGAGGAATTGGATAGC---TATAAATCAGTCATGGAACTGATGAATGTACTGGAACTTAGAAAACATGAAGCTATTCATTTAACTTTCAAGCAAgtgtgtaataattatcctagtgtgcagagggagtgaatgtgtgtaacaac Alignment from CESAR TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAAT-TTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG agaaactcacttgctgtggccagtaattcctgtgcctcctgtgtttttagTTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCGTGTGAACAAAAAGGCACTTGATCAGCTTGTGAACTTTCTCTGAGCAGAAGGAAAAGTTGATAAAGCGGCAAGAGGAATTGGAT---AGCTATAAATCAGTCATGGAACTGATGAATGTACTGGAACTTAGAAAACATGAAGCTATTCATTTAACTTTCAAGCAAgtgtgtaataattatcctagtgtgcagagggagtgaatgtgtgtaacaac Alignment from Spaln_aa2Genome TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTC-TCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG agaaactcacttgctgtggccagtaattcctgtgcctcctgtgtttttagTTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCGTGTGAACAAAAAGGCACTTGATCAGCTTGTGAACTTTcTCTGAGCAGAAGGAAAAGTTGATAAAGCGGCAAGAGGAATTGGAT---AGCTATAAATCAGTCATGGAACTGATGAATGTACTGGAACTTAGAAAACATGAAGCTATTCATTTAACTTTCAAGCAAgtgtgtaataattatcctagtgtgcagagggagtgaatgtgtgtaacaac Alignment from Spaln_nt2Genome TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAA-TTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG agaaactcacttgctgtggccagtaattcctgtgcctcctgtgtttttagTTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCGTGTGAACAAAAAGGCACTTGATCAGCTTGTGAACTTTCTCTGAGCAGAAGGAAAAGTTGATAAAGCGGCAAGAGGAATTGGATA---GCTATAAATCAGTCATGGAACTGATGAATGTACTGGAACTTAGAAAACATGAAGCTATTCATTTAACTTTCAAGCAAgtgtgtaataattatcctagtgtgcagagggagtgaatgtgtgtaacaac Alignment from Pairagon TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAA-TTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG agaaactcacttgctgtggccagtaattcctgtgcctcctgtgtttttagTTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCGTGTGAACAAAAAGGCACTTGATCAGCTTGTGAACTTTCTCTGAGCAGAAGGAAAAGTTGATAAAGCGGCAAGAGGAATTGGATA---GCTATAAATCAGTCATGGAACTGATGAATGTACTGGAACTTAGAAAACATGAAGCTATTCATTTAACTTTCAAGCAAgtgtgtaataattatcctagtgtgcagagggagtgaatgtgtgtaacaac Alignment from Exonerate_protein2genome TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAAT-TTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG agaaactcacttgctgtggccagtaattcctgtgcctcctgtgtttttagTTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCGTGTGAACAAAAAGGCACTTGATCAGCTTGTGAACTTTCTCTGAGCAGAAGGAAAAGTTGATAAAGCGGCAAGAGGAATTGGAT---AGCTATAAATCAGTCATGGAACTGATGAATGTACTGGAACTTAGAAAACATGAAGCTATTCATTTAACTTTCAAGCAAgtgtgtaataattatcctagtgtgcagagggagtgaatgtgtgtaacaac Alignment from Exonerate_coding2genome TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAAT-TTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG agaaactcacttgctgtggccagtaattcctgtgcctcctgtgtttttagTTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCGTGTGAACAAAAAGGCACTTGATCAGCTTGTGAACTTTCTCTGAGCAGAAGGAAAAGTTGATAAAGCGGCAAGAGGAATTGGAT---AGCTATAAATCAGTCATGGAACTGATGAATGTACTGGAACTTAGAAAACATGAAGCTATTCATTTAACTTTCAAGCAAgtgtgtaataattatcctagtgtgcagagggagtgaatgtgtgtaacaac Alignment from GeneWise TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTC-TCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG agaaactcacttgctgtggccagtaattcctgtgcctcctgtgtttttagTTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCGTGTGAACAAAAAGGCACTTGATCAGCTTGTGAACTTTCTCTGAGCAGAAGGAAAAGTTGATAAAGCGGCAAGAGGAATTGGAT---AGCTATAAATCAGTCATGGAACTGATGAATGTACTGGAACTTAGAAAACATGAAGCTATTCATTTAACTTTCAAGCAAgtgtgtaataattatcctagtgtgcagagggagtgaatgtgtgtaacaac #### Snx32_ID1068_10 --> 0 - 0 Original Alignment AAACTGGAAGGCCGG-GTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAG atataaaggaaaaactagtaaccctttaacatcaatgtatctgttcttagAAATTGGAAGGACGGCGTAGCCTCTGATGAGGACTTGAAGCTGTCTGACATGCTGAGATATTACATGCTAGACTCACAGGCAGCCAAGgtacttggcagcctaggtaacttgagtattaaccacatggacagtcatca Alignment from CESAR AAACTGGAAGGCCGG-GTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAG atataaaggaaaaactagtaaccctttaacatcaatgtatctgttcttagAAATTGGAAGGACGGCGTAGCCTCTGATGAGGACTTGAAGCTGTCTGACATGCTGAGATATTACATGCTAGACTCACAGGCAGCCAAGgtacttggcagcctaggtaacttgagtattaaccacatggacagtcatca Alignment from Spaln_aa2Genome AAACTGGAAGGCCGG-GTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAG atataaaggaaaaactagtaaccctttaacatcaatgtatctgttcttagAAATTGGAAGGACGGcGTAGCCTCTGATGAGGACTTGAAGCTGTCTGACATGCTGAGATATTACATGCTAGACTCACAGGCAGCCAAGgtacttggcagcctaggtaacttgagtattaaccacatggacagtcatca Alignment from Spaln_nt2Genome AAACTGGAAGGCCGG-GTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAG atataaaggaaaaactagtaaccctttaacatcaatgtatctgttcttagAAATTGGAAGGACGGCGTAGCCTCTGATGAGGACTTGAAGCTGTCTGACATGCTGAGATATTACATGCTAGACTCACAGGCAGCCAAGgtacttggcagcctaggtaacttgagtattaaccacatggacagtcatca Alignment from Pairagon AAACTGGAAGGCCGG-GTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAG atataaaggaaaaactagtaaccctttaacatcaatgtatctgttcttagAAATTGGAAGGACGGCGTAGCCTCTGATGAGGACTTGAAGCTGTCTGACATGCTGAGATATTACATGCTAGACTCACAGGCAGCCAAGgtacttggcagcctaggtaacttgagtattaaccacatggacagtcatca Alignment from Exonerate_protein2genome AAACTGGAAGGCCGG-GTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAG atataaaggaaaaactagtaaccctttaacatcaatgtatctgttcttagAAATTGGAAGGACGGCGTAGCCTCTGATGAGGACTTGAAGCTGTCTGACATGCTGAGATATTACATGCTAGACTCACAGGCAGCCAAGgtacttggcagcctaggtaacttgagtattaaccacatggacagtcatca Alignment from Exonerate_coding2genome AAACTGGAAGGCCGG-GTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAG atataaaggaaaaactagtaaccctttaacatcaatgtatctgttcttagAAATTGGAAGGACGGCGTAGCCTCTGATGAGGACTTGAAGCTGTCTGACATGCTGAGATATTACATGCTAGACTCACAGGCAGCCAAGgtacttggcagcctaggtaacttgagtattaaccacatggacagtcatca Alignment from GeneWise AAACTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACAGGCAGCCAAG atataaaggaaaaactagtaaccctttaacatcaatgtatctgttcttagaaattggaagGAC---------GGCGTAGCCTCTGATGAGGACTTGAAGCTGTCTGACATGCTGAGATATTACATGCTAGACTCACAGGCAGCCAAGgtacttggcagcctaggtaacttgagtattaaccacatggacagtcatca #### Snx32_ID1069_9 --> 1 - 0 Original Alignment gAGCTTCCTGAAGCTGGCAGAGCTC-TTTGAACGGCTGAGA atgagagggaatccttgagatgccccaggatttttatataccattttcaggAGCTTCTTGAAGCTGGCAGAACTCCTTTGAACGGCTGAGGgtatatactaccttcgacacttggtcttctcaagtattgccaaggtgtac Alignment from CESAR gAGCTTCCTGAAGCTGGCAGAGCTC-TTTGAACGGCTGAGA atgagagggaatccttgagatgccccaggatttttatataccattttcaggAGCTTCTTGAAGCTGGCAGAACTCCTTTGAACGGCTGAGGgtatatactaccttcgacacttggtcttctcaagtattgccaaggtgtac Alignment from Spaln_aa2Genome GAGCTTCCTGAAGCTGGCAGAGCTC-TTTGAACGGCTGAGA atgagagggaatccttgagatgccccaggatttttatataccattttcagGAGCTTCTTGAAGCTGGCAGAACTCcTTTGAACGGCTGAGGgtatatactaccttcgacacttggtcttctcaagtattgccaaggtgtac Alignment from Spaln_nt2Genome GAGCTTCCTGAAGCTGGCAGAGCTC-TTTGAACGGCTGAGA atgagagggaatccttgagatgccccaggatttttatataccattttcagGAGCTTCTTGAAGCTGGCAGAACTCCTTTGAACGGCTGAGGgtatatactaccttcgacacttggtcttctcaagtattgccaaggtgtac Alignment from Pairagon GAGCTTCCTGAAGCTGGCAGAGCT-CTTTGAACGGCTGAGA atgagagggaatccttgagatgccccaggatttttatataccattttcagGAGCTTCTTGAAGCTGGCAGAACTCCTTTGAACGGCTGAGGgtatatactaccttcgacacttggtcttctcaagtattgccaaggtgtac Alignment from Exonerate_protein2genome GAGCTTCCTGAAGCTGGCAGAGCTC-TTTGAACGGCTGAGA atgagagggaatccttgagatgccccaggatttttatataccattttcagGAGCTTCTTGAAGCTGGCAGAACTCCTTTGAACGGCTGAGGgtatatactaccttcgacacttggtcttctcaagtattgccaaggtgtac Alignment from Exonerate_coding2genome atgagagggaatccttgagatgccccaggatttttatataccattttcaggagcttcttgaagctggcagaactcctttgaacggctgagggtatatactaccttcgacacttggtcttctcaagtattgccaaggtgtac Alignment from GeneWise atgagagggaatccttgagatgccccaggatttttatataccattttcaggagcttcttgaagctggcagaactcctttgaacggctgagggtatatactaccttcgacacttggtcttctcaagtattgccaaggtgtac #### Snx32_ID1070_8 --> 2 - 2 Original Alignment gcCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAA-GTCAACCAACTCAAGag tggtggcactgggtgtgcacattcatccgtgcttctctgtctccacttaggcCTGGCAGACAACTATATCCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGGAACGTGAACCAACTCAAGaggtaagggttcacgctgttgctgcattcactctgctcttgcaccattgctg Alignment from CESAR gcCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAA-GTCAACCAACTCAAGag tggtggcactgggtgtgcacattcatccgtgcttctctgtctccacttaggcCTGGCAGACAACTATATCCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGGAACGTGAACCAACTCAAGaggtaagggttcacgctgttgctgcattcactctgctcttgcaccattgctg Alignment from Spaln_aa2Genome GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAA-GTCAACCAACTCAAGAG tggtggcactgggtgtgcacattcatccgtgcttctctgtctccacttagGCCTGGCAGACAACTATATCCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGGAAcGTGAACCAACTCAAGAGgtaagggttcacgctgttgctgcattcactctgctcttgcaccattgctg Alignment from Spaln_nt2Genome GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAA-GTCAACCAACTCAAGAG tggtggcactgggtgtgcacattcatccgtgcttctctgtctccacttagGCCTGGCAGACAACTATATCCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGGAACGTGAACCAACTCAAGAGgtaagggttcacgctgttgctgcattcactctgctcttgcaccattgctg Alignment from Pairagon GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAA-GTCAACCAACTCAAGAG tggtggcactgggtgtgcacattcatccgtgcttctctgtctccacttagGCCTGGCAGACAACTATATCCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGGAACGTGAACCAACTCAAGAGgtaagggttcacgctgttgctgcattcactctgctcttgcaccattgctg Alignment from Exonerate_protein2genome GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAA-GTCAACCAACTCAAGAG tggtggcactgggtgtgcacattcatccgtgcttctctgtctccacttagGCCTGGCAGACAACTATATCCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGGAACGTGAACCAACTCAAGAGgtaagggttcacgctgttgctgcattcactctgctcttgcaccattgctg Alignment from Exonerate_coding2genome GCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAA-GTCAACCAACTCAAGAG tggtggcactgggtgtgcacattcatccgtgcttctctgtctccacttagGCCTGGCAGACAACTATATCCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGGAACGTGAACCAACTCAAGAGgtaagggttcacgctgttgctgcattcactctgctcttgcaccattgctg Alignment from GeneWise ----------------------------------------------------CTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAA- TGGTGGCACTGGGTGTGCACATTCATCCGTGCTTCTCTGTCTCCACTTAGGCCTGGCAGACAACTATATCCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGGAACgtgaaccaactcaagaggtaagggttcacgctgttgctgcattcactctgctcttgcaccattgctg #### Snx32_ID1075_3 --> 0 - 0 Original Alignment AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCAC-GAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAA------GAGTACGCCGGCCTCATC aaggcagctttgggtaagaagggatcaccccacgtctgactcgtccccagAGTGGGCTCCCTCACTCTGCCCAGTCTGAGTTCTCAGTGGTCCGCCAGCATCGAAGAGTTCATCTGGCTACATGACACCTATGTAGAAAATGAAGAGTATGAATACACCAGCCTCATTgtaagcagcagcagggcagagctggagtggtaagaatatacataagggtg Alignment from CESAR AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCAC-GAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAAGAG------TACGCCGGCCTCATC aaggcagctttgggtaagaagggatcaccccacgtctgactcgtccccagAGTGGGCTCCCTCACTCTGCCCAGTCTGAGTTCTCAGTGGTCCGCCAGCATCGAAGAGTTCATCTGGCTACATGACACCTATGTAGAAAATGAAGAGTATGAATACACCAGCCTCATTgtaagcagcagcagggcagagctggagtggtaagaatatacataagggtg Alignment from Spaln_aa2Genome AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCAC-GAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAA------GAGTACGCCGGCCTCATC aaggcagctttgggtaagaagggatcaccccacgtctgactcgtccccagAGTGGGCTCCCTCACTCTGCCCAGTCTGAGTTCTCAGTGGTCCGCCAGCATcGAAGAGTTCATCTGGCTACATGACACCTATGTAGAAAATGAAGAGTATGAATACACCAGCCTCATTgtaagcagcagcagggcagagctggagtggtaagaatatacataagggtg Alignment from Spaln_nt2Genome AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCA-CGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAAGAGTACG------CCGGCCTCATC aaggcagctttgggtaagaagggatcaccccacgtctgactcgtccccagAGTGGGCTCCCTCACTCTGCCCAGTCTGAGTTCTCAGTGGTCCGCCAGCATCGAAGAGTTCATCTGGCTACATGACACCTATGTAGAAAATGAAGAGTATGAATACACCAGCCTCATTgtaagcagcagcagggcagagctggagtggtaagaatatacataagggtg Alignment from Pairagon AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCA-CGAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAAGAGTACG------CCGGCCTCATC aaggcagctttgggtaagaagggatcaccccacgtctgactcgtccccagAGTGGGCTCCCTCACTCTGCCCAGTCTGAGTTCTCAGTGGTCCGCCAGCATCGAAGAGTTCATCTGGCTACATGACACCTATGTAGAAAATGAAGAGTATGAATACACCAGCCTCATTgtaagcagcagcagggcagagctggagtggtaagaatatacataagggtg Alignment from Exonerate_protein2genome AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCAC-GAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAA------GAGTACGCCGGCCTCATC aaggcagctttgggtaagaagggatcaccccacgtctgactcgtccccagAGTGGGCTCCCTCACTCTGCCCAGTCTGAGTTCTCAGTGGTCCGCCAGCATCGAAGAGTTCATCTGGCTACATGACACCTATGTAGAAAATGAAGAGTATGAATACACCAGCCTCATTgtaagcagcagcagggcagagctggagtggtaagaatatacataagggtg Alignment from Exonerate_coding2genome AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCAC-GAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAA------GAGTACGCCGGCCTCATC aaggcagctttgggtaagaagggatcaccccacgtctgactcgtccccagAGTGGGCTCCCTCACTCTGCCCAGTCTGAGTTCTCAGTGGTCCGCCAGCATCGAAGAGTTCATCTGGCTACATGACACCTATGTAGAAAATGAAGAGTATGAATACACCAGCCTCATTgtaagcagcagcagggcagagctggagtggtaagaatatacataagggtg Alignment from GeneWise AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCAC-GAAGAGTTCATCTGGCTACATGACACCTATGTGGAAAACGAAGAGTAC------GCCGGCCTCATC aaggcagctttgggtaagaagggatcaccccacgtctgactcgtccccagAGTGGGCTCCCTCACTCTGCCCAGTCTGAGTTCTCAGTGGTCCGCCAGCATCGAAGAGTTCATCTGGCTACATGACACCTATGTAGAAAATGAAGAGTATGAATACACCAGCCTCATTgtaagcagcagcagggcagagctggagtggtaagaatatacataagggtg #### Sptbn2_ID610_5 --> 1 - 2 Original Alignment aTACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTG-GCCTTTAATGCCATTGTGCACAAACACcg ctctatccagtccttatatggcagagcactcggggtttgttcttctgcagaTACCCCAATGTCAATGTGCATAACTTTACCACCAGTTGGAGAGATGGGCTGCGCCTTTAATGCCATTGTGCACAAACACcggtgagcaggtggggttagtgacccagatacacatacatgggcatggtgag Alignment from CESAR aTACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTG-GCCTTTAATGCCATTGTGCACAAACACcg ctctatccagtccttatatggcagagcactcggggtttgttcttctgcagaTACCCCAATGTCAATGTGCATAACTTTACCACCAGTTGGAGAGATGGGCTGCGCCTTTAATGCCATTGTGCACAAACACcggtgagcaggtggggttagtgacccagatacacatacatgggcatggtgag Alignment from Spaln_aa2Genome ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTG-GCCTTTAATGCCATTGTGCACAAACACCG ctctatccagtccttatatggcagagcactcggggtttgttcttctgcagATACCCCAATGTCAATGTGCATAACTTTACCACCAGTTGGAGAGATGGGCTGcGCCTTTAATGCCATTGTGCACAAACACCGgtgagcaggtggggttagtgacccagatacacatacatgggcatggtgag Alignment from Spaln_nt2Genome ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTG-GCCTTTAATGCCATTGTGCACAAACACCG ctctatccagtccttatatggcagagcactcggggtttgttcttctgcagATACCCCAATGTCAATGTGCATAACTTTACCACCAGTTGGAGAGATGGGCTGCGCCTTTAATGCCATTGTGCACAAACACCGgtgagcaggtggggttagtgacccagatacacatacatgggcatggtgag Alignment from Pairagon ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTG-GCCTTTAATGCCATTGTGCACAAACACCG ctctatccagtccttatatggcagagcactcggggtttgttcttctgcagATACCCCAATGTCAATGTGCATAACTTTACCACCAGTTGGAGAGATGGGCTGCGCCTTTAATGCCATTGTGCACAAACACCGgtgagcaggtggggttagtgacccagatacacatacatgggcatggtgag Alignment from Exonerate_protein2genome ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTG-GCCTTTAATGCCATTGTGCACAAACACCG ctctatccagtccttatatggcagagcactcggggtttgttcttctgcagATACCCCAATGTCAATGTGCATAACTTTACCACCAGTTGGAGAGATGGGCTGCGCCTTTAATGCCATTGTGCACAAACACCGgtgagcaggtggggttagtgacccagatacacatacatgggcatggtgag Alignment from Exonerate_coding2genome ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTG-GCCTTTAATGCCATTGTGCACAAACACCG ctctatccagtccttatatggcagagcactcggggtttgttcttctgcagATACCCCAATGTCAATGTGCATAACTTTACCACCAGTTGGAGAGATGGGCTGCGCCTTTAATGCCATTGTGCACAAACACCGgtgagcaggtggggttagtgacccagatacacatacatgggcatggtgag Alignment from GeneWise ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTG-GCCTTTAATGCCATTGTGCACAAACACCG ctctatccagtccttatatggcagagcactcggggtttgttcttctgcagATACCCCAATGTCAATGTGCATAACTTTACCACCAGTTGGAGAGATGGGCTGCGCCTTTAATGCCATTGTGCACAAACACCGgtgagcaggtggggttagtgacccagatacacatacatgggcatggtgag #### Sptbn2_ID628_23 --> 0 - 2 Original Alignment GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAA-CAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGag tcttactcccaaagacctgaagtttagatcttgttctgtcttccacacagGACGAGCTGAGTGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAACCAAGCCCTTGCTGATTATGCCCAAACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGaggtgagtgtgtgagtttcatgtgccttggctgcatggaattgaaagcggta Alignment from CESAR GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAA-CAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGag tcttactcccaaagacctgaagtttagatcttgttctgtcttccacacagGACGAGCTGAGTGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAACCAAGCCCTTGCTGATTATGCCCAAACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGaggtgagtgtgtgagtttcatgtgccttggctgcatggaattgaaagcggta Alignment from Spaln_aa2Genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAA-CAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG tcttactcccaaagacctgaagtttagatcttgttctgtcttccacacagGACGAGCTGAGTGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAAcCAAGCCCTTGCTGATTATGCCCAAACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtgagtgtgtgagtttcatgtgccttggctgcatggaattgaaagcggta Alignment from Spaln_nt2Genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAA-CAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG tcttactcccaaagacctgaagtttagatcttgttctgtcttccacacagGACGAGCTGAGTGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAACCAAGCCCTTGCTGATTATGCCCAAACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtgagtgtgtgagtttcatgtgccttggctgcatggaattgaaagcggta Alignment from Pairagon GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAA-CAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG tcttactcccaaagacctgaagtttagatcttgttctgtcttccacacagGACGAGCTGAGTGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAACCAAGCCCTTGCTGATTATGCCCAAACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtgagtgtgtgagtttcatgtgccttggctgcatggaattgaaagcggta Alignment from Exonerate_protein2genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAA-CAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG tcttactcccaaagacctgaagtttagatcttgttctgtcttccacacagGACGAGCTGAGTGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAACCAAGCCCTTGCTGATTATGCCCAAACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtgagtgtgtgagtttcatgtgccttggctgcatggaattgaaagcggta Alignment from Exonerate_coding2genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAA-CAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG tcttactcccaaagacctgaagtttagatcttgttctgtcttccacacagGACGAGCTGAGTGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAACCAAGCCCTTGCTGATTATGCCCAAACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtgagtgtgtgagtttcatgtgccttggctgcatggaattgaaagcggta Alignment from GeneWise GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTG-GAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG tcttactcccaaagacctgaagtttagatcttgttctgtcttccacacagGACGAGCTGAGTGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAACCAAGCCCTTGCTGATTATGCCCAAACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtgagtgtgtgagtttcatgtgccttggctgcatggaattgaaagcggta #### Sptbn2_ID629_24 --> 1 - 0 Original Alignment cACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGT-GAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT aaagaacagttaggtgacacatagcaagtatgctcctccttccttcttagcACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGTATGCAAGCCTGAAGGAGCTGGCAGGAGAGCGGCATGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGATCTGGAGCAGTGGATACAGGAGCATCGAGGTTGTTGCAGCCTCCCATGAGCTGGGCCAAGATTATGAACATGTGACTgtaagtctacagtctaacaaaaaggatcaagacctgtggggtgacaaagg Alignment from CESAR cACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGT-GAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT aaagaacagttaggtgacacatagcaagtatgctcctccttccttcttagcACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGTATGCAAGCCTGAAGGAGCTGGCAGGAGAGCGGCATGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGATCTGGAGCAGTGGATACAGGAGCATCGAGGTTGTTGCAGCCTCCCATGAGCTGGGCCAAGATTATGAACATGTGACTgtaagtctacagtctaacaaaaaggatcaagacctgtggggtgacaaagg Alignment from Spaln_aa2Genome CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGT-GAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT aaagaacagttaggtgacacatagcaagtatgctcctccttccttcttagCACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGTATGCAAGCCTGAAGGAGCTGGCAGGAGAGCGGCATGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGATCTGGAGCAGTGGATACAGGAGCATcGAGGTTGTTGCAGCCTCCCATGAGCTGGGCCAAGATTATGAACATGTGACTgtaagtctacagtctaacaaaaaggatcaagacctgtggggtgacaaagg Alignment from Spaln_nt2Genome CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGT-GAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT aaagaacagttaggtgacacatagcaagtatgctcctccttccttcttagCACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGTATGCAAGCCTGAAGGAGCTGGCAGGAGAGCGGCATGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGATCTGGAGCAGTGGATACAGGAGCATCGAGGTTGTTGCAGCCTCCCATGAGCTGGGCCAAGATTATGAACATGTGACTgtaagtctacagtctaacaaaaaggatcaagacctgtggggtgacaaagg Alignment from Pairagon CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGT-GAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT aaagaacagttaggtgacacatagcaagtatgctcctccttccttcttagCACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGTATGCAAGCCTGAAGGAGCTGGCAGGAGAGCGGCATGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGATCTGGAGCAGTGGATACAGGAGCATCGAGGTTGTTGCAGCCTCCCATGAGCTGGGCCAAGATTATGAACATGTGACTgtaagtctacagtctaacaaaaaggatcaagacctgtggggtgacaaagg Alignment from Exonerate_protein2genome CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGT-GAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT aaagaacagttaggtgacacatagcaagtatgctcctccttccttcttagCACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGTATGCAAGCCTGAAGGAGCTGGCAGGAGAGCGGCATGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGATCTGGAGCAGTGGATACAGGAGCATCGAGGTTGTTGCAGCCTCCCATGAGCTGGGCCAAGATTATGAACATGTGACTgtaagtctacagtctaacaaaaaggatcaagacctgtggggtgacaaagg Alignment from Exonerate_coding2genome CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAGCGT-GAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT aaagaacagttaggtgacacatagcaagtatgctcctccttccttcttagCACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGTATGCAAGCCTGAAGGAGCTGGCAGGAGAGCGGCATGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGATCTGGAGCAGTGGATACAGGAGCATCGAGGTTGTTGCAGCCTCCCATGAGCTGGGCCAAGATTATGAACATGTGACTgtaagtctacagtctaacaaaaaggatcaagacctgtggggtgacaaagg Alignment from GeneWise CACAAGACTAACAATACGCCAAGCCCAGGTGGACAAGCTGTACGCCAGCCTGAAGGAGCTGGCAGGAGAGCGGCGCGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTGGATGACCTGGAACAGTGGATACAGGAG-CGTGAAGTTGTGGCAGCCTCCCATGAACTGGGCCAAGACTATGAGCACGTGACT aaagaacagttaggtgacacatagcaagtatgctcctccttccttcttagCACAAGACTAACAATACGGCAAGCCCAGGTAGATAAGCTGTATGCAAGCCTGAAGGAGCTGGCAGGAGAGCGGCATGAGCGCCTGCAGGAGCACCTCCGGCTGTGCCAGCTCCGCAGAGAGCTAGATGATCTGGAGCAGTGGATACAGGAGCATCGAGGTTGTTGCAGCCTCCCATGAGCTGGGCCAAGATTATGAACATGTGACTgtaagtctacagtctaacaaaaaggatcaagacctgtggggtgacaaagg #### Sptbn2_ID632_27 --> 1 - 0 Original Alignment gGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTC-TCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggcccacctgtaagtagtaacttgttttcttgcagaGATGTGTCCTCTGCAGATTTAGTCATCAAGAATCAGCAAGGAATCAAGGCAGAGATAGAGGCTAGAGCAGACAGGTTTCTCTTCCTGCATTGACATGGGCCAGGAGCTGCTGGCCAGGAGCCATTATGCTGCTCAGGAAgtactgaagatctggagagagtccagctagatgcacccaacaggacccac Alignment from CESAR gGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGG-TTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggcccacctgtaagtagtaacttgttttcttgcagaGATGTGTCCTCTGCAGATTTAGTCATCAAGAATCAGCAAGGAATCAAGGCAGAGATAGAGGCTAGAGCAGACAGGTTTCTCTTCCTGCATTGACATGGGCCAGGAGCTGCTGGCCAGGAGCCATTATGCTGCTCAGGAAgtactgaagatctggagagagtccagctagatgcacccaacaggacccac Alignment from Spaln_aa2Genome GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTC-TCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggcccacctgtaagtagtaacttgttttcttgcagAGATGTGTCCTCTGCAGATTTAGTCATCAAGAATCAGCAAGGAATCAAGGCAGAGATAGAGGCTAGAGCAGACAGGTTTcTCTTCCTGCATTGACATGGGCCAGGAGCTGCTGGCCAGGAGCCATTATGCTGCTCAGGAAgtactgaagatctggagagagtccagctagatgcacccaacaggacccac Alignment from Spaln_nt2Genome GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGG-TTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggcccacctgtaagtagtaacttgttttcttgcagAGATGTGTCCTCTGCAGATTTAGTCATCAAGAATCAGCAAGGAATCAAGGCAGAGATAGAGGCTAGAGCAGACAGGTTTCTCTTCCTGCATTGACATGGGCCAGGAGCTGCTGGCCAGGAGCCATTATGCTGCTCAGGAAgtactgaagatctggagagagtccagctagatgcacccaacaggacccac Alignment from Pairagon GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGG-TTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggcccacctgtaagtagtaacttgttttcttgcagAGATGTGTCCTCTGCAGATTTAGTCATCAAGAATCAGCAAGGAATCAAGGCAGAGATAGAGGCTAGAGCAGACAGGTTTCTCTTCCTGCATTGACATGGGCCAGGAGCTGCTGGCCAGGAGCCATTATGCTGCTCAGGAAgtactgaagatctggagagagtccagctagatgcacccaacaggacccac Alignment from Exonerate_protein2genome GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGG-TTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggcccacctgtaagtagtaacttgttttcttgcagAGATGTGTCCTCTGCAGATTTAGTCATCAAGAATCAGCAAGGAATCAAGGCAGAGATAGAGGCTAGAGCAGACAGGTTTCTCTTCCTGCATTGACATGGGCCAGGAGCTGCTGGCCAGGAGCCATTATGCTGCTCAGGAAgtactgaagatctggagagagtccagctagatgcacccaacaggacccac Alignment from Exonerate_coding2genome GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGG-TTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggcccacctgtaagtagtaacttgttttcttgcagAGATGTGTCCTCTGCAGATTTAGTCATCAAGAATCAGCAAGGAATCAAGGCAGAGATAGAGGCTAGAGCAGACAGGTTTCTCTTCCTGCATTGACATGGGCCAGGAGCTGCTGGCCAGGAGCCATTATGCTGCTCAGGAAgtactgaagatctggagagagtccagctagatgcacccaacaggacccac Alignment from GeneWise GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGACAGGTTC-TCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggcccacctgtaagtagtaacttgttttcttgcagAGATGTGTCCTCTGCAGATTTAGTCATCAAGAATCAGCAAGGAATCAAGGCAGAGATAGAGGCTAGAGCAGACAGGTTTCTCTTCCTGCATTGACATGGGCCAGGAGCTGCTGGCCAGGAGCCATTATGCTGCTCAGGAAgtactgaagatctggagagagtccagctagatgcacccaacaggacccac #### Sptbn2_ID633_28 --> 0 - 1 Original Alignment ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAG-GAGAAGATGGACTGGCTACAGCTTg gtcatcatggtagagccccattactcattctctctctctctctctcttagATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGCGAGAAGATGGACTGGCTACAACTTggtgagttatttagcaatatcacaggaggtaggggttttgtgagggtgtac Alignment from CESAR ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAG-GAGAAGATGGACTGGCTACAGCTTg gtcatcatggtagagccccattactcattctctctctctctctctcttagATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGCGAGAAGATGGACTGGCTACAACTTggtgagttatttagcaatatcacaggaggtaggggttttgtgagggtgtac Alignment from Spaln_aa2Genome ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAG-GAGAAGATGGACTGGCTACAGCTTG gtcatcatggtagagccccattactcattctctctctctctctctcttagATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGcGAGAAGATGGACTGGCTACAACTTGgtgagttatttagcaatatcacaggaggtaggggttttgtgagggtgtac Alignment from Spaln_nt2Genome ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAG-GAGAAGATGGACTGGCTACAGCTTG gtcatcatggtagagccccattactcattctctctctctctctctcttagATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGCGAGAAGATGGACTGGCTACAACTTGgtgagttatttagcaatatcacaggaggtaggggttttgtgagggtgtac Alignment from Pairagon ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAG-GAGAAGATGGACTGGCTACAGCTTG gtcatcatggtagagccccattactcattctctctctctctctctcttagATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGCGAGAAGATGGACTGGCTACAACTTGgtgagttatttagcaatatcacaggaggtaggggttttgtgagggtgtac Alignment from Exonerate_protein2genome ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAG-GAGAAGATGGACTGGCTACAGCTTG gtcatcatggtagagccccattactcattctctctctctctctctcttagATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGCGAGAAGATGGACTGGCTACAACTTGgtgagttatttagcaatatcacaggaggtaggggttttgtgagggtgtac Alignment from Exonerate_coding2genome ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAG-GAGAAGATGGACTGGCTACAGCTTG gtcatcatggtagagccccattactcattctctctctctctctctcttagATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGCGAGAAGATGGACTGGCTACAACTTGgtgagttatttagcaatatcacaggaggtaggggttttgtgagggtgtac Alignment from GeneWise ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAG-GAGAAGATGGACTGGCTACAGCTTG gtcatcatggtagagccccattactcattctctctctctctctctcttagATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGCGAGAAGATGGACTGGCTACAACTTGgtgagttatttagcaatatcacaggaggtaggggttttgtgagggtgtac #### Ssh3_ID445_11 --> 1 - 2 Original Alignment aGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCA-CAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCag acaacacgcatacccaacagatgcctctaccctgttctctcttcctccagaGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACCAGCTTCTGCCCCACTGGAAGGAGACACATCGATTTATTGAGGATGCCaggtacgtctgctcccagttttgatgccccaactactagtacagactgggac Alignment from CESAR aGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCA-CAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCag acaacacgcatacccaacagatgcctctaccctgttctctcttcctccagaGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACCAGCTTCTGCCCCACTGGAAGGAGACACATCGATTTATTGAGGATGCCaggtacgtctgctcccagttttgatgccccaactactagtacagactgggac Alignment from Spaln_aa2Genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCA-CAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG acaacacgcatacccaacagatgcctctaccctgttctctcttcctccagAGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCAcCAGCTTCTGCCCCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtacgtctgctcccagttttgatgccccaactactagtacagactgggac Alignment from Spaln_nt2Genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCA-CAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG acaacacgcatacccaacagatgcctctaccctgttctctcttcctccagAGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACCAGCTTCTGCCCCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtacgtctgctcccagttttgatgccccaactactagtacagactgggac Alignment from Pairagon AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCA-CAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG acaacacgcatacccaacagatgcctctaccctgttctctcttcctccagAGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACCAGCTTCTGCCCCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtacgtctgctcccagttttgatgccccaactactagtacagactgggac Alignment from Exonerate_protein2genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCA-CAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG acaacacgcatacccaacagatgcctctaccctgttctctcttcctccagAGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACCAGCTTCTGCCCCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtacgtctgctcccagttttgatgccccaactactagtacagactgggac Alignment from Exonerate_coding2genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCA-CAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG acaacacgcatacccaacagatgcctctaccctgttctctcttcctccagAGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACCAGCTTCTGCCCCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtacgtctgctcccagttttgatgccccaactactagtacagactgggac Alignment from GeneWise AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCG-GCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG acaacacgcatacccaacagatgcctctaccctgttctctcttcctccagAGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACCAGCTTCTGCCCCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtacgtctgctcccagttttgatgccccaactactagtacagactgggac #### Ssh3_ID449_7 --> 1 - 2 Original Alignment gGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCT-ACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGAca ggagggaaccaagtatgatggagtgatgtcacttgctgacctttccccaggGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGCAGTGCTCTTGCATGGGCTCACTTACTACCAGGCGAAACTTAACTCTGATCAGGGCTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCTTTTCGACCACCTAATGCTGAGCCTGGAcagtgagaactgggacagggtgcagcagggggacaaggaggaaggtgttgct Alignment from CESAR gGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCT-ACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGAca ggagggaaccaagtatgatggagtgatgtcacttgctgacctttccccaggGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGCAGTGCTCTTGCATGGGCTCACTTACTACCAGGCGAAACTTAACTCTGATCAGGGCTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCTTTTCGACCACCTAATGCTGAGCCTGGAcagtgagaactgggacagggtgcagcagggggacaaggaggaaggtgttgct Alignment from Spaln_aa2Genome GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCT-ACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA ggagggaaccaagtatgatggagtgatgtcacttgctgacctttccccagGGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGCAGTGCTCTTGCATGGGCTcACTTACTACCAGGCGAAACTTAACTCTGATCAGGGCTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCTTTTCGACCACCTAATGCTGAGCCTGGACAgtgagaactgggacagggtgcagcagggggacaaggaggaaggtgttgct Alignment from Spaln_nt2Genome GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCT-ACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA ggagggaaccaagtatgatggagtgatgtcacttgctgacctttccccagGGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGCAGTGCTCTTGCATGGGCTCACTTACTACCAGGCGAAACTTAACTCTGATCAGGGCTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCTTTTCGACCACCTAATGCTGAGCCTGGACAgtgagaactgggacagggtgcagcagggggacaaggaggaaggtgttgct Alignment from Pairagon GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCT-ACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA ggagggaaccaagtatgatggagtgatgtcacttgctgacctttccccagGGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGCAGTGCTCTTGCATGGGCTCACTTACTACCAGGCGAAACTTAACTCTGATCAGGGCTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCTTTTCGACCACCTAATGCTGAGCCTGGACAgtgagaactgggacagggtgcagcagggggacaaggaggaaggtgttgct Alignment from Exonerate_protein2genome GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCT-ACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA ggagggaaccaagtatgatggagtgatgtcacttgctgacctttccccagGGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGCAGTGCTCTTGCATGGGCTCACTTACTACCAGGCGAAACTTAACTCTGATCAGGGCTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCTTTTCGACCACCTAATGCTGAGCCTGGACAgtgagaactgggacagggtgcagcagggggacaaggaggaaggtgttgct Alignment from Exonerate_coding2genome GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCT-ACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA ggagggaaccaagtatgatggagtgatgtcacttgctgacctttccccagGGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGCAGTGCTCTTGCATGGGCTCACTTACTACCAGGCGAAACTTAACTCTGATCAGGGCTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCTTTTCGACCACCTAATGCTGAGCCTGGACAgtgagaactgggacagggtgcagcagggggacaaggaggaaggtgttgct Alignment from GeneWise GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGG-GCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA ggagggaaccaagtatgatggagtgatgtcacttgctgacctttccccagGGCCACACTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTGGCCTTGTGCCTGGTGGCAGTGCTCTTGCATGGGCTCACTTACTACCAGGCGAAACTTAACTCTGATCAGGGCTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCTTTTCGACCACCTAATGCTGAGCCTGGACAgtgagaactgggacagggtgcagcagggggacaaggaggaaggtgttgct #### Stambpl1_ID6902_9 --> 1 - 0 Original Alignment cACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACT-TGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctgaatggtccttaattttgtgtgaaacttttgtcttctttgtagcACTGGCATCTTCAGGCTCACCAATGCTGGCATGCTTGAGGTTTCTACTCTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtaagtagacaccatgggattgttagtgtatttgatcaatcatcaatata Alignment from CESAR cACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACT-TGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctgaatggtccttaattttgtgtgaaacttttgtcttctttgtagcACTGGCATCTTCAGGCTCACCAATGCTGGCATGCTTGAGGTTTCTACTCTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtaagtagacaccatgggattgttagtgtatttgatcaatcatcaatata Alignment from Spaln_aa2Genome CACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACT-TGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctgaatggtccttaattttgtgtgaaacttttgtcttctttgtagCACTGGCATCTTCAGGCTCACCAATGCTGGCATGCTTGAGGTTTCTACTcTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtaagtagacaccatgggattgttagtgtatttgatcaatcatcaatata Alignment from Spaln_nt2Genome CACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACT-TGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctgaatggtccttaattttgtgtgaaacttttgtcttctttgtagCACTGGCATCTTCAGGCTCACCAATGCTGGCATGCTTGAGGTTTCTACTCTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtaagtagacaccatgggattgttagtgtatttgatcaatcatcaatata Alignment from Pairagon CACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACT-TGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctgaatggtccttaattttgtgtgaaacttttgtcttctttgtagCACTGGCATCTTCAGGCTCACCAATGCTGGCATGCTTGAGGTTTCTACTCTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtaagtagacaccatgggattgttagtgtatttgatcaatcatcaatata Alignment from Exonerate_protein2genome CACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACT-TGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctgaatggtccttaattttgtgtgaaacttttgtcttctttgtagCACTGGCATCTTCAGGCTCACCAATGCTGGCATGCTTGAGGTTTCTACTCTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtaagtagacaccatgggattgttagtgtatttgatcaatcatcaatata Alignment from Exonerate_coding2genome CACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCTACT-TGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctgaatggtccttaattttgtgtgaaacttttgtcttctttgtagCACTGGCATCTTCAGGCTCACCAATGCTGGCATGCTTGAGGTTTCTACTCTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtaagtagacaccatgggattgttagtgtatttgatcaatcatcaatata Alignment from GeneWise CACCGGCATTTTCAGGCTCACCAACGCTGGCATGCTTGAGGTTTCT-ACTTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTGTTCAGT tgttcctgaatggtccttaattttgtgtgaaacttttgtcttctttgtagCACTGGCATCTTCAGGCTCACCAATGCTGGCATGCTTGAGGTTTCTACTCTGTAAAAAGAAGGGCTTCCATCCTCACACCAAGGACCCCAAGCTCTTCAGTgtaagtagacaccatgggattgttagtgtatttgatcaatcatcaatata #### Stip1_ID1988_13 --> 0 - 2 Original Alignment GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGC-CCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCga gtgacacatgtagtgttgatgtgccccctatcgttattaattttgcaaagGAAGCAGCAGACGGTTACCGACGTTGCATGATGGCACAGTACAACAGACATGACAGCCCCTGAGGATGTGACG------------------CCTGAGGTTCAGCAAATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCgagtgcgttgaatgggagagagaattttatgtttcattcggtaaacaatttg Alignment from CESAR GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGC-CCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCga gtgacacatgtagtgttgatgtgccccctatcgttattaattttgcaaagGAAGCAGCAGACGGTTACCGACGTTGCATGATGGCACAGTACAACAGACATGACAGCCCCTGAGGATGTGACG------------------CCTGAGGTTCAGCAAATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCgagtgcgttgaatgggagagagaattttatgtttcattcggtaaacaatttg Alignment from Spaln_aa2Genome GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGC-CCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA gtgacacatgtagtgttgatgtgccccctatcgttattaattttgcaaagGAAGCAGCAGACGGTTACCGACGTTGCATGATGGCACAGTACAACAGACATGACAGCcCCTGAGGATGTGACG------------------CCTGAGGTTCAGCAAATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGAgtgcgttgaatgggagagagaattttatgtttcattcggtaaacaatttg Alignment from Spaln_nt2Genome GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCC-TGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA gtgacacatgtagtgttgatgtgccccctatcgttattaattttgcaaagGAAGCAGCAGACGGTTACCGACGTTGCATGATGGCACAGTACAACAGACATGACAGCCCCTGAGGATGTGACG------------------CCTGAGGTTCAGCAAATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGAgtgcgttgaatgggagagagaattttatgtttcattcggtaaacaatttg Alignment from Pairagon GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAG-CCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA gtgacacatgtagtgttgatgtgccccctatcgttattaattttgcaaagGAAGCAGCAGACGGTTACCGACGTTGCATGATGGCACAGTACAACAGACATGACAGCCCCTGAGGATGTGACG------------------CCTGAGGTTCAGCAAATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGAgtgcgttgaatgggagagagaattttatgtttcattcggtaaacaatttg Alignment from Exonerate_protein2genome GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA gtgacacatgtagtgttgatgtgccccctatcgTTATTAATTTTGCAAAGGAAGCAGCAGACGGTTACCGACGTTGCATGATGGCACAGTACAACAGACATGACAGCCCCTGAGGATGTGACGCCTGAGGTTCAGCAAATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGAgtgcgttgaatgggagagagaattttatgtttcattcggtaaacaatttg Alignment from Exonerate_coding2genome GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA gtgacacatgtagtgttgatgtgccccctatcgTTATTAATTTTGCAAAGGAAGCAGCAGACGGTTACCGACGTTGCATGATGGCACAGTACAACAGACATGACAGCCCCTGAGGATGTGACGCCTGAGGTTCAGCAAATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGAgtgcgttgaatgggagagagaattttatgtttcattcggtaaacaatttg Alignment from GeneWise GAAGCAGCAGATGGTTACCAACGCTGTATGATGGCACAGTACAACAGACATGAT-AGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA gtgacacatgtagtgttgatgtgccccctatcgttattaattttgcaaagGAAGCAGCAGACGGTTACCGACGTTGCATGATGGCACAGTACAACAGACATGACAGCCCCTGAGGATGTG------------------ACGCCTGAGGTTCAGCAAATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGAgtgcgttgaatgggagagagaattttatgtttcattcggtaaacaatttg #### Stip1_ID1989_12 --> 2 - 0 Original Alignment tcAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATG-GATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG tgagaggattgaggctagtaagaccaactgttctctttcactttttcaagacAAGGGTTATACCCGGCAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGCCAC------CAAAAGGCATTAGACCTGGACTCCAGTTGTAAAgttccgtgctgctggcctatacacacatccctgcttactccccctagggt Alignment from CESAR tcAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG tgagaggattgaggctagtaagaccaactgttctctttcactttttcaagacAAGGGTTATACCCGGCAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATG-----CCACCAAAAGGCATTAGACCTGGACTCCAGTTGTAAAgttccgtgctgctggcctatacacacatccctgcttactccccctagggt Alignment from Spaln_aa2Genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG tgagaggattgaggctagtaagaccaactgttctctttcactttttcaagACAAGGGTTATACCCGGCAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGC-----CACCAAAAGGCATTAGACCTGGACTCCAGTTGTAAAgttccgtgctgctggcctatacacacatccctgcttactccccctagggt Alignment from Spaln_nt2Genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG tgagaggattgaggctagtaagaccaactgttctctttcactttttcaagACAAGGGTTATACCCGGCAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATG-----CCACCAAAAGGCATTAGACCTGGACTCCAGTTGTAAAgttccgtgctgctggcctatacacacatccctgcttactccccctagggt Alignment from Pairagon TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG tgagaggattgaggctagtaagaccaactgttctctttcactttttcaagACAAGGGTTATACCCGGCAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATG-----CCACCAAAAGGCATTAGACCTGGACTCCAGTTGTAAAgttccgtgctgctggcctatacacacatccctgcttactccccctagggt Alignment from Exonerate_protein2genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTA-GACCTGGACTCCAGCTGTAAG tgagaggattgaggctagtaagaccaactgttctctttcactttttcaagACAAGGGTTATACCCGGCAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGCCA------CCAAAAGGCATTAGACCTGGACTCCAGTTGTAAAgttccgtgctgctggcctatacacacatccctgcttactccccctagggt Alignment from Exonerate_coding2genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTA-GACCTGGACTCCAGCTGTAAG tgagaggattgaggctagtaagaccaactgttctctttcactttttcaagACAAGGGTTATACCCGGCAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGCCA------CCAAAAGGCATTAGACCTGGACTCCAGTTGTAAAgttccgtgctgctggcctatacacacatccctgcttactccccctagggt Alignment from GeneWise TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG tgagaggattgaggctagtaagaccaactgttctctttcactttttcaagACAAGGGTTATACCCGGCAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGC-----CACCAAAAGGCATTAGACCTGGACTCCAGTTGTAAAgttccgtgctgctggcctatacacacatccctgcttactccccctagggt #### Stx3_ID3299_7 --> 2 - 0 Original Alignment ctGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATG-TTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG agcagagtgttatactgagcctacctttaaacaggtattttccgttacagctGGCAAGAAGACAACAGATGAGGAGCTAGAGGAGATGCTTGGAGAGTGGTAATCCAGCCATCTTCACTTCTGGGgtaagtaacatctgcacttggttcagtagactggtatgggcccatgtggg Alignment from CESAR ctGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATG-TTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG agcagagtgttatactgagcctacctttaaacaggtattttccgttacagctGGCAAGAAGACAACAGATGAGGAGCTAGAGGAGATGCTTGGAGAGTGGTAATCCAGCCATCTTCACTTCTGGGgtaagtaacatctgcacttggttcagtagactggtatgggcccatgtggg Alignment from Spaln_aa2Genome CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATG-TTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG agcagagtgttatactgagcctacctttaaacaggtattttccgttacagCTGGCAAGAAGACAACAGATGAGGAGCTAGAGGAGATGcTTGGAGAGTGGTAATCCAGCCATCTTCACTTCTGGGgtaagtaacatctgcacttggttcagtagactggtatgggcccatgtggg Alignment from Spaln_nt2Genome CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATG-TTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG agcagagtgttatactgagcctacctttaaacaggtattttccgttacagCTGGCAAGAAGACAACAGATGAGGAGCTAGAGGAGATGCTTGGAGAGTGGTAATCCAGCCATCTTCACTTCTGGGgtaagtaacatctgcacttggttcagtagactggtatgggcccatgtggg Alignment from Pairagon CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATG-TTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG agcagagtgttatactgagcctacctttaaacaggtattttccgttacagCTGGCAAGAAGACAACAGATGAGGAGCTAGAGGAGATGCTTGGAGAGTGGTAATCCAGCCATCTTCACTTCTGGGgtaagtaacatctgcacttggttcagtagactggtatgggcccatgtggg Alignment from Exonerate_protein2genome CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATG-TTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG agcagagtgttatactgagcctacctttaaacaggtattttccgttacagCTGGCAAGAAGACAACAGATGAGGAGCTAGAGGAGATGCTTGGAGAGTGGTAATCCAGCCATCTTCACTTCTGGGgtaagtaacatctgcacttggttcagtagactggtatgggcccatgtggg Alignment from Exonerate_coding2genome CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATG-TTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG agcagagtgttatactgagcctacctttaaacaggtattttccgttacagCTGGCAAGAAGACAACAGATGAGGAGCTAGAGGAGATGCTTGGAGAGTGGTAATCCAGCCATCTTCACTTCTGGGgtaagtaacatctgcacttggttcagtagactggtatgggcccatgtggg Alignment from GeneWise CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATG-TTGGAGAGTGGCAACCCAGCCATCTTCACTTCTGGG agcagagtgttatactgagcctacctttaaacaggtattttccgttacagCTGGCAAGAAGACAACAGATGAGGAGCTAGAGGAGATGCTTGGAGAGTGGTAATCCAGCCATCTTCACTTCTGGGgtaagtaacatctgcacttggttcagtagactggtatgggcccatgtggg #### Stx5a_ID2330_2 --> 0 - 2 Original Alignment AATGGAATCCAAACAAGCAAACCGGCTCTGCAC-GCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCag acagtaactagcaacagtgactaaattactggccccttttccctctgcagAATGGAATCCAAACAAGCAAACCAGCTCTGCATCGCAGCCCGACAGTGCAGTGAACTTACCCTTATGGCTaggtgggttgtaggaattttggaatgggcggatagtcttttgagtgtatcct Alignment from CESAR AATGGAATCCAAACAAGCAAACCGGCTCTGCAC-GCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCag acagtaactagcaacagtgactaaattactggccccttttccctctgcagAATGGAATCCAAACAAGCAAACCAGCTCTGCATCGCAGCCCGACAGTGCAGTGAACTTACCCTTATGGCTaggtgggttgtaggaattttggaatgggcggatagtcttttgagtgtatcct Alignment from Spaln_aa2Genome AATGGAATCCAAACAAGCAAACCGGCTCTGCAC-GCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG acagtaactagcaacagtgactaaattactggccccttttccctctgcagAATGGAATCCAAACAAGCAAACCAGCTCTGCATcGCAGCCCGACAGTGCAGTGAACTTACCCTTATGGCTAGgtgggttgtaggaattttggaatgggcggatagtcttttgagtgtatcct Alignment from Spaln_nt2Genome AATGGAATCCAAACAAGCAAACCGGCTCTGCA-CGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG acagtaactagcaacagtgactaaattactggccccttttccctctgcagAATGGAATCCAAACAAGCAAACCAGCTCTGCATCGCAGCCCGACAGTGCAGTGAACTTACCCTTATGGCTAGgtgggttgtaggaattttggaatgggcggatagtcttttgagtgtatcct Alignment from Pairagon AATGGAATCCAAACAAGCAAACCGGCTCTGCA-CGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG acagtaactagcaacagtgactaaattactggccccttttccctctgcagAATGGAATCCAAACAAGCAAACCAGCTCTGCATCGCAGCCCGACAGTGCAGTGAACTTACCCTTATGGCTAGgtgggttgtaggaattttggaatgggcggatagtcttttgagtgtatcct Alignment from Exonerate_protein2genome AATGGAATCCAAACAAGCAAACCGGCTCTGCAC-GCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG acagtaactagcaacagtgactaaattactggccccttttccctctgcagAATGGAATCCAAACAAGCAAACCAGCTCTGCATCGCAGCCCGACAGTGCAGTGAACTTACCCTTATGGCTAGgtgggttgtaggaattttggaatgggcggatagtcttttgagtgtatcct Alignment from Exonerate_coding2genome AATGGAATCCAAACAAGCAAACCGGCTCTGCAC-GCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG acagtaactagcaacagtgactaaattactggccccttttccctctgcagAATGGAATCCAAACAAGCAAACCAGCTCTGCATCGCAGCCCGACAGTGCAGTGAACTTACCCTTATGGCTAGgtgggttgtaggaattttggaatgggcggatagtcttttgagtgtatcct Alignment from GeneWise AATGGAATCCAAACAAGCAAACCGGCTCTGCAC-GCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG acagtaactagcaacagtgactaaattactggccccttttccctctgcagAATGGAATCCAAACAAGCAAACCAGCTCTGCATCGCAGCCCGACAGTGCAGTGAACTTACCCTTATGGCTAGgtgggttgtaggaattttggaatgggcggatagtcttttgagtgtatcct #### Stx5a_ID2334_6 --> 0 - 0 Original Alignment TCAAAGCTGGCTTCTATGTCCAATGACTTC-AAGTCAGTTCTAGAAGTGAGGACTGAG ggggggaatagcaaaataaattctctgtttattacctcctgttgtcacagTCAAAGCTGGCTTCTATGTCCAATGACTTCCAAGTCAGTTCTAGAAGTGAGGACTGAGgttggtgggataagtagttgggttaaggaccttttgtagggtacaccaca Alignment from CESAR TCAAAGCTGGCTTCTATGTCCAATGACTTC-AAGTCAGTTCTAGAAGTGAGGACTGAG ggggggaatagcaaaataaattctctgtttattacctcctgttgtcacagTCAAAGCTGGCTTCTATGTCCAATGACTTCCAAGTCAGTTCTAGAAGTGAGGACTGAGgttggtgggataagtagttgggttaaggaccttttgtagggtacaccaca Alignment from Spaln_aa2Genome TCAAAGCTGGCTTCTATGTCCAATGACTTC-AAGTCAGTTCTAGAAGTGAGGACTGAG ggggggaatagcaaaataaattctctgtttattacctcctgttgtcacagTCAAAGCTGGCTTCTATGTCCAATGACTTCcAAGTCAGTTCTAGAAGTGAGGACTGAGgttggtgggataagtagttgggttaaggaccttttgtagggtacaccaca Alignment from Spaln_nt2Genome TCAAAGCTGGCTTCTATGTCCAATGACTT-CAAGTCAGTTCTAGAAGTGAGGACTGAG ggggggaatagcaaaataaattctctgtttattacctcctgttgtcacagTCAAAGCTGGCTTCTATGTCCAATGACTTCCAAGTCAGTTCTAGAAGTGAGGACTGAGgttggtgggataagtagttgggttaaggaccttttgtagggtacaccaca Alignment from Pairagon TCAAAGCTGGCTTCTATGTCCAATGACTT-CAAGTCAGTTCTAGAAGTGAGGACTGAG ggggggaatagcaaaataaattctctgtttattacctcctgttgtcacagTCAAAGCTGGCTTCTATGTCCAATGACTTCCAAGTCAGTTCTAGAAGTGAGGACTGAGgttggtgggataagtagttgggttaaggaccttttgtagggtacaccaca Alignment from Exonerate_protein2genome TCAAAGCTGGCTTCTATGTCCAATGACTTC-AAGTCAGTTCTAGAAGTGAGGACTGAG ggggggaatagcaaaataaattctctgtttattacctcctgttgtcacagTCAAAGCTGGCTTCTATGTCCAATGACTTCCAAGTCAGTTCTAGAAGTGAGGACTGAGgttggtgggataagtagttgggttaaggaccttttgtagggtacaccaca Alignment from Exonerate_coding2genome TCAAAGCTGGCTTCTATGTCCAATGACTTC-AAGTCAGTTCTAGAAGTGAGGACTGAG ggggggaatagcaaaataaattctctgtttattacctcctgttgtcacagTCAAAGCTGGCTTCTATGTCCAATGACTTCCAAGTCAGTTCTAGAAGTGAGGACTGAGgttggtgggataagtagttgggttaaggaccttttgtagggtacaccaca Alignment from GeneWise TCAAAGCTGGCTTCTATGTCCAATGACTTC-AAGTCAGTTCTAGAAGTGAGGACTGAG ggggggaatagcaaaataaattctctgtttattacctcctgttgtcacagTCAAAGCTGGCTTCTATGTCCAATGACTTCCAAGTCAGTTCTAGAAGTGAGGACTGAGgttggtgggataagtagttgggttaaggaccttttgtagggtacaccaca #### Stx5a_ID2335_7 --> 0 - 1 Original Alignment AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTG-TCAGCCCTGCCTCTTGCCCCCAACAACCTTg acacacccatattctcagagcccagactaccgcctctcctttgccttcagAATCTGAAACAGCAGAGGAACCGGCGAGCCCAGTTATCCAGGGCACCAGTGCTCTGCCCTGCCTCTAGCCCCCAACAACCTTggtgagtttgcattagcactatgcctaggggatatgttctggtgggtctgg Alignment from CESAR AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTG-TCAGCCCTGCCTCTTGCCCCCAACAACCTTg acacacccatattctcagagcccagactaccgcctctcctttgccttcagAATCTGAAACAGCAGAGGAACCGGCGAGCCCAGTTATCCAGGGCACCAGTGCTCTGCCCTGCCTCTAGCCCCCAACAACCTTggtgagtttgcattagcactatgcctaggggatatgttctggtgggtctgg Alignment from Spaln_aa2Genome AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTG-TCAGCCCTGCCTCTTGCCCCCAACAACCTTG acacacccatattctcagagcccagactaccgcctctcctttgccttcagAATCTGAAACAGCAGAGGAACCGGCGAGCCCAGTTATCCAGGGCACCAGTGcTCTGCCCTGCCTCTAGCCCCCAACAACCTTGgtgagtttgcattagcactatgcctaggggatatgttctggtgggtctgg Alignment from Spaln_nt2Genome AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTG-TCAGCCCTGCCTCTTGCCCCCAACAACCTTG acacacccatattctcagagcccagactaccgcctctcctttgccttcagAATCTGAAACAGCAGAGGAACCGGCGAGCCCAGTTATCCAGGGCACCAGTGCTCTGCCCTGCCTCTAGCCCCCAACAACCTTGgtgagtttgcattagcactatgcctaggggatatgttctggtgggtctgg Alignment from Pairagon AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTG-TCAGCCCTGCCTCTTGCCCCCAACAACCTTG acacacccatattctcagagcccagactaccgcctctcctttgccttcagAATCTGAAACAGCAGAGGAACCGGCGAGCCCAGTTATCCAGGGCACCAGTGCTCTGCCCTGCCTCTAGCCCCCAACAACCTTGgtgagtttgcattagcactatgcctaggggatatgttctggtgggtctgg Alignment from Exonerate_protein2genome AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTG-TCAGCCCTGCCTCTTGCCCCCAACAACCTTG acacacccatattctcagagcccagactaccgcctctcctttgccttcagAATCTGAAACAGCAGAGGAACCGGCGAGCCCAGTTATCCAGGGCACCAGTGCTCTGCCCTGCCTCTAGCCCCCAACAACCTTGgtgagtttgcattagcactatgcctaggggatatgttctggtgggtctgg Alignment from Exonerate_coding2genome AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTG-TCAGCCCTGCCTCTTGCCCCCAACAACCTTG acacacccatattctcagagcccagactaccgcctctcctttgccttcagAATCTGAAACAGCAGAGGAACCGGCGAGCCCAGTTATCCAGGGCACCAGTGCTCTGCCCTGCCTCTAGCCCCCAACAACCTTGgtgagtttgcattagcactatgcctaggggatatgttctggtgggtctgg Alignment from GeneWise AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTG-TCAGCCCTGCCTCTTGCCCCCAACAACCTTG acacacccatattctcagagcccagactaccgcctctcctttgccttcagAATCTGAAACAGCAGAGGAACCGGCGAGCCCAGTTATCCAGGGCACCAGTGCTCTGCCCTGCCTCTAGCCCCCAACAACCTTGgtgagtttgcattagcactatgcctaggggatatgttctggtgggtctgg #### Syvn1_ID1383_2 --> 0 - 0 Original Alignment GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGC-AAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggtaattgggaagtaacctcaaatactgaccctattccttttctagGTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAGgtgaggtgaaggcagggttcaggggaaggtgtccgaatgcattttccatg Alignment from CESAR GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATG-GGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggtaattgggaagtaacctcaaatactgaccctattccttttctagGTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAGgtgaggtgaaggcagggttcaggggaaggtgtccgaatgcattttccatg Alignment from Spaln_aa2Genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGC-AAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggtaattgggaagtaacctcaaatactgaccctattccttttctagGTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGGcAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAGgtgaggtgaaggcagggttcaggggaaggtgtccgaatgcattttccatg Alignment from Spaln_nt2Genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGAT-GGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggtaattgggaagtaacctcaaatactgaccctattccttttctagGTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAGgtgaggtgaaggcagggttcaggggaaggtgtccgaatgcattttccatg Alignment from Pairagon GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGAT-GGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggtaattgggaagtaacctcaaatactgaccctattccttttctagGTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAGgtgaggtgaaggcagggttcaggggaaggtgtccgaatgcattttccatg Alignment from Exonerate_protein2genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATG-GGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggtaattgggaagtaacctcaaatactgaccctattccttttctagGTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAGgtgaggtgaaggcagggttcaggggaaggtgtccgaatgcattttccatg Alignment from Exonerate_coding2genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATG-GGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggtaattgggaagtaacctcaaatactgaccctattccttttctagGTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAGgtgaggtgaaggcagggttcaggggaaggtgtccgaatgcattttccatg Alignment from GeneWise GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGC-AAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG caggggtaattgggaagtaacctcaaatactgaccctattccttttctagGTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGGCAAGGTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAGgtgaggtgaaggcagggttcaggggaaggtgtccgaatgcattttccatg #### Syvn1_ID1387_6 --> 0 - 1 Original Alignment TACGCCATTCTG-ATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAg agagcagggggaagctagggttcacatctctgtccttctttatctctcagTACGCCATTCTGCATGACCATGGCACTCACCATCTTCATCAAGTATGTGCTGCATTCTGTGGACCTCCAGAGTGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAggtattgaattcccagtcagtccacagctgcatcacagtcagtccacagct Alignment from CESAR TACGCCATTCTG-ATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAg agagcagggggaagctagggttcacatctctgtccttctttatctctcagTACGCCATTCTGCATGACCATGGCACTCACCATCTTCATCAAGTATGTGCTGCATTCTGTGGACCTCCAGAGTGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAggtattgaattcccagtcagtccacagctgcatcacagtcagtccacagct Alignment from Spaln_aa2Genome CGCCATTCTG---ATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcagggggaagctagggttcacatctctgtccttctttatctctcagTACGCCATTCTGCATGACCATGGCACTCACCATCTTCATCAAGTATGTGCTGCATTCTGTGGACCTCCAGAGTGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtattgaattcccagtcagtccacagctgcatcacagtcagtccacagct Alignment from Spaln_nt2Genome TACGCCATTCTG-ATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcagggggaagctagggttcacatctctgtccttctttatctctcagTACGCCATTCTGCATGACCATGGCACTCACCATCTTCATCAAGTATGTGCTGCATTCTGTGGACCTCCAGAGTGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtattgaattcccagtcagtccacagctgcatcacagtcagtccacagct Alignment from Pairagon TACGCCATTCTG-ATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcagggggaagctagggttcacatctctgtccttctttatctctcagTACGCCATTCTGCATGACCATGGCACTCACCATCTTCATCAAGTATGTGCTGCATTCTGTGGACCTCCAGAGTGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtattgaattcccagtcagtccacagctgcatcacagtcagtccacagct Alignment from Exonerate_protein2genome TACGCCATTCTG-ATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcagggggaagctagggttcacatctctgtccttctttatctctcagTACGCCATTCTGCATGACCATGGCACTCACCATCTTCATCAAGTATGTGCTGCATTCTGTGGACCTCCAGAGTGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtattgaattcccagtcagtccacagctgcatcacagtcagtccacagct Alignment from Exonerate_coding2genome TACGCCATTCTG-ATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcagggggaagctagggttcacatctctgtccttctttatctctcagTACGCCATTCTGCATGACCATGGCACTCACCATCTTCATCAAGTATGTGCTGCATTCTGTGGACCTCCAGAGTGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtattgaattcccagtcagtccacagctgcatcacagtcagtccacagct Alignment from GeneWise -TACGCCATTCTGATGACCATGGTGCTTACCATCTTCATCAAGTATGTGCTGCACTCCGTGGACCTCCAGAGCGAGAACCCCTGGGACAACAAGGCTGTATACATGCTCTACACGGAGCTGTTTACAG agagcagggggaagctagggttcacatctctgtccttctttatctctcagTACGCCATTCTGCATGACCATGGCACTCACCATCTTCATCAAGTATGTGCTGCATTCTGTGGACCTCCAGAGTGAGAATCCCTGGGACAACAAGGCTGTATACATGCTCTACACAGAGCTGTTTACAGgtattgaattcccagtcagtccacagctgcatcacagtcagtccacagct #### Syvn1_ID1392_11 --> 2 - 1 Original Alignment tcCCCCAGGGCCTCCTGCCT-CCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAg gtggcactgacagccgagctttgttctcgttaattttttctctcctgcagtcCCCCAGGGCCTCCTGCCACTCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCAATGGGTCCCTTTCCGCCTGTCCCACCTCCCCCAAGTTCTGGAAAGGCTGCGGCGCCTCCACCCACCAGTACAggtaagttctgtgcatgccagggtaggtagtggtggccagctacatctgga Alignment from CESAR tcCCCCAGGGCCTCCTGCCT-CCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAg gtggcactgacagccgagctttgttctcgttaattttttctctcctgcagtcCCCCAGGGCCTCCTGCCACTCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCAATGGGTCCCTTTCCGCCTGTCCCACCTCCCCCAAGTTCTGGAAAGGCTGCGGCGCCTCCACCCACCAGTACAggtaagttctgtgcatgccagggtaggtagtggtggccagctacatctgga Alignment from Spaln_aa2Genome TCCCCCAGGGCCTCCTGCCT-CCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG gtggcactgacagccgagctttgttctcgttaattttttctctcctgcagTCCCCCAGGGCCTCCTGCCAcTCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCAATGGGTCCCTTTCCGCCTGTCCCACCTCCCCCAAGTTCTGGAAAGGCTGCGGCGCCTCCACCCACCAGTACAGgtaagttctgtgcatgccagggtaggtagtggtggccagctacatctgga Alignment from Spaln_nt2Genome TCCCCCAGGGCCTCCTGCCTC-CTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG gtggcactgacagccgagctttgttctcgttaattttttctctcctgcagTCCCCCAGGGCCTCCTGCCACTCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCAATGGGTCCCTTTCCGCCTGTCCCACCTCCCCCAAGTTCTGGAAAGGCTGCGGCGCCTCCACCCACCAGTACAGgtaagttctgtgcatgccagggtaggtagtggtggccagctacatctgga Alignment from Pairagon TCCCCCAGGGCCTCCTGCCTC-CTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG gtggcactgacagccgagctttgttctcgttaattttttctctcctgcagTCCCCCAGGGCCTCCTGCCACTCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCAATGGGTCCCTTTCCGCCTGTCCCACCTCCCCCAAGTTCTGGAAAGGCTGCGGCGCCTCCACCCACCAGTACAGgtaagttctgtgcatgccagggtaggtagtggtggccagctacatctgga Alignment from Exonerate_protein2genome TCCCCCAGGGCCTCCTGCCT-CCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG gtggcactgacagccgagctttgttctcgttaattttttctctcctgcagTCCCCCAGGGCCTCCTGCCACTCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCAATGGGTCCCTTTCCGCCTGTCCCACCTCCCCCAAGTTCTGGAAAGGCTGCGGCGCCTCCACCCACCAGTACAGgtaagttctgtgcatgccagggtaggtagtggtggccagctacatctgga Alignment from Exonerate_coding2genome TCCCCCAGGGCCTCCTGCCT-CCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG gtggcactgacagccgagctttgttctcgttaattttttctctcctgcagTCCCCCAGGGCCTCCTGCCACTCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCAATGGGTCCCTTTCCGCCTGTCCCACCTCCCCCAAGTTCTGGAAAGGCTGCGGCGCCTCCACCCACCAGTACAGgtaagttctgtgcatgccagggtaggtagtggtggccagctacatctgga Alignment from GeneWise TCCCCCAGGGCCTCCTGCCT-CCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG gtggcactgacagccgagctttgttctcgttaattttttctctcctgcagTCCCCCAGGGCCTCCTGCCACTCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCAATGGGTCCCTTTCCGCCTGTCCCACCTCCCCCAAGTTCTGGAAAGGCTGCGGCGCCTCCACCCACCAGTACAGgtaagttctgtgcatgccagggtaggtagtggtggccagctacatctgga #### Syvn1_ID1395_14 --> 1 - 1 Original Alignment gCCCCCCAGGCCAGCTACTTCAGTGAAC-CCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTg cagcgatcccggaaggccaaggttgggattctctttatctatcgttacaggCCCCCAAGGCCAGCCACCTCCGTGAACCCACACTGAAGAAACTGCATCTACTGTGGTATCTGCTGCACCTTCCAGTAGTGCTCCAAGCTCCGAGGCTCCAACTCCCTCCCCGGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTggtaaggtagcaaaagaataggcccagaacatctaggtgtgggattatgga Alignment from CESAR gCCCCCCAGGCCAGCTACTTCAGTGAACCCC-ACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTg cagcgatcccggaaggccaaggttgggattctctttatctatcgttacaggCCCCCAAGGCCAGCCACCTCCGTGAACCCACACTGAAGAAACTGCATCTACTGTGGTATCTGCTGCACCTTCCAGTAGTGCTCCAAGCTCCGAGGCTCCAACTCCCTCCCCGGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTggtaaggtagcaaaagaataggcccagaacatctaggtgtgggattatgga Alignment from Spaln_aa2Genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCC-ACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG cagcgatcccggaaggccaaggttgggattctctttatctatcgttacagGCCCCCAAGGCCAGCCACCTCCGTGAACCCAcACTGAAGAAACTGCATCTACTGTGGTATCTGCTGCACCTTCCAGTAGTGCTCCAAGCTCCGAGGCTCCAACTCCCTCCCCGGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtaaggtagcaaaagaataggcccagaacatctaggtgtgggattatgga Alignment from Spaln_nt2Genome GCCCCCCAGGCCAGCTACTTCAGTGAACCC-CACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG cagcgatcccggaaggccaaggttgggattctctttatctatcgttacagGCCCCCAAGGCCAGCCACCTCCGTGAACCCACACTGAAGAAACTGCATCTACTGTGGTATCTGCTGCACCTTCCAGTAGTGCTCCAAGCTCCGAGGCTCCAACTCCCTCCCCGGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtaaggtagcaaaagaataggcccagaacatctaggtgtgggattatgga Alignment from Pairagon GCCCCCCAGGCCAGCTACTTCAGTGAACCC-CACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG cagcgatcccggaaggccaaggttgggattctctttatctatcgttacagGCCCCCAAGGCCAGCCACCTCCGTGAACCCACACTGAAGAAACTGCATCTACTGTGGTATCTGCTGCACCTTCCAGTAGTGCTCCAAGCTCCGAGGCTCCAACTCCCTCCCCGGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtaaggtagcaaaagaataggcccagaacatctaggtgtgggattatgga Alignment from Exonerate_protein2genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCC-ACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG cagcgatcccggaaggccaaggttgggattctctttatctatcgttacagGCCCCCAAGGCCAGCCACCTCCGTGAACCCACACTGAAGAAACTGCATCTACTGTGGTATCTGCTGCACCTTCCAGTAGTGCTCCAAGCTCCGAGGCTCCAACTCCCTCCCCGGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtaaggtagcaaaagaataggcccagaacatctaggtgtgggattatgga Alignment from Exonerate_coding2genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCC-ACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG cagcgatcccggaaggccaaggttgggattctctttatctatcgttacagGCCCCCAAGGCCAGCCACCTCCGTGAACCCACACTGAAGAAACTGCATCTACTGTGGTATCTGCTGCACCTTCCAGTAGTGCTCCAAGCTCCGAGGCTCCAACTCCCTCCCCGGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtaaggtagcaaaagaataggcccagaacatctaggtgtgggattatgga Alignment from GeneWise GCCCCCCAGGCCAGCTACTTCAGTGAACCCC-ACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG cagcgatcccggaaggccaaggttgggattctctttatctatcgttacagGCCCCCAAGGCCAGCCACCTCCGTGAACCCACACTGAAGAAACTGCATCTACTGTGGTATCTGCTGCACCTTCCAGTAGTGCTCCAAGCTCCGAGGCTCCAACTCCCTCCCCGGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtaaggtagcaaaagaataggcccagaacatctaggtgtgggattatgga #### Taf5_ID10096_4 --> 0 - 2 Original Alignment GTATTTTTTGGTTTACTAAAAGAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCT-AAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACag caatgagcaaaccaaaaacagtttaggagtgggtttccctatcttcacagGTATTTTTTGGTTTACTAAAAGAACCAGACATTGAGGTGCCCTTGGATGACGAGGATGAGGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTCAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCACCTCAAAACaggtgagcagtacataaaggtgaaagctatggcaagaggactggagtgggtc Alignment from CESAR GTATTTTTTGGTTTACTAAAAGAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCT-AAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACag caatgagcaaaccaaaaacagtttaggagtgggtttccctatcttcacagGTATTTTTTGGTTTACTAAAAGAACCAGACATTGAGGTGCCCTTGGATGACGAGGATGAGGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTCAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCACCTCAAAACaggtgagcagtacataaaggtgaaagctatggcaagaggactggagtgggtc Alignment from Spaln_aa2Genome GTATTTTTTGGTTTACTAAAAGAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCT-AAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACAG caatgagcaaaccaaaaacagtttaggagtgggtttccctatcttcacagGTATTTTTTGGTTTACTAAAAGAACCAGACATTGAGGTGCCCTTGGATGACGAGGATGAGGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTcAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCACCTCAAAACAGgtgagcagtacataaaggtgaaagctatggcaagaggactggagtgggtc Alignment from Spaln_nt2Genome GTATTTTTTGGTTTACTAAAAGAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCT-AAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACAG caatgagcaaaccaaaaacagtttaggagtgggtttccctatcttcacagGTATTTTTTGGTTTACTAAAAGAACCAGACATTGAGGTGCCCTTGGATGACGAGGATGAGGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTCAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCACCTCAAAACAGgtgagcagtacataaaggtgaaagctatggcaagaggactggagtgggtc Alignment from Pairagon GTATTTTTTGGTTTACTAAAAGAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCT-AAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACAG caatgagcaaaccaaaaacagtttaggagtgggtttccctatcttcacagGTATTTTTTGGTTTACTAAAAGAACCAGACATTGAGGTGCCCTTGGATGACGAGGATGAGGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTCAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCACCTCAAAACAGgtgagcagtacataaaggtgaaagctatggcaagaggactggagtgggtc Alignment from Exonerate_protein2genome GTATTTTTTGGTTTACTAAAAGAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCT-AAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACAG caatgagcaaaccaaaaacagtttaggagtgggtttccctatcttcacagGTATTTTTTGGTTTACTAAAAGAACCAGACATTGAGGTGCCCTTGGATGACGAGGATGAGGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTCAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCACCTCAAAACAGgtgagcagtacataaaggtgaaagctatggcaagaggactggagtgggtc Alignment from Exonerate_coding2genome GTATTTTTTGGTTTACTAAAAGAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCT-AAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACAG caatgagcaaaccaaaaacagtttaggagtgggtttccctatcttcacagGTATTTTTTGGTTTACTAAAAGAACCAGACATTGAGGTGCCCTTGGATGACGAGGATGAGGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTCAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCACCTCAAAACAGgtgagcagtacataaaggtgaaagctatggcaagaggactggagtgggtc Alignment from GeneWise GTATTTTTTGGTTTACTAAAAGAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCT-AAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCGCCTCAAAACAG caatgagcaaaccaaaaacagtttaggagtgggtttccctatcttcacagGTATTTTTTGGTTTACTAAAAGAACCAGACATTGAGGTGCCCTTGGATGACGAGGATGAGGAAGGAGAAAATGAAGAAGGAAAACCTAAAAAGAAGAAGCCTCAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCCAATGCCCCACCTCAAAACAGgtgagcagtacataaaggtgaaagctatggcaagaggactggagtgggtc #### Tbc1d10c_ID399_5 --> 1 - 0 Original Alignment gCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACC-CTGTACCGGCCAGAGCAGGGATAC------TGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacaggaggatgccagggtggctagcccaccctcttctgcctcccataggCAGCAGGGGCTACTGCAGGTTATGAAAGCTTACAACCCTATACCGGCCAGAGCAGGGATATTGTCACTGTCAGGCTCAGGGACCTGTAGCTGCTGTGCTTCTCATGCATCTACCACCAGAGgtgagggaccttgaacctgatctgggaccctcaatccctaatgatccgca Alignment from CESAR gCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTAC-ACCCTGTACCGGCCAGAGCAGGGATACTGC------CAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacaggaggatgccagggtggctagcccaccctcttctgcctcccataggCAGCAGGGGCTACTGCAGGTTATGAAAGCTTACAACCCTATACCGGCCAGAGCAGGGATATTGTCACTGTCAGGCTCAGGGACCTGTAGCTGCTGTGCTTCTCATGCATCTACCACCAGAGgtgagggaccttgaacctgatctgggaccctcaatccctaatgatccgca Alignment from Spaln_aa2Genome GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTAC-ACCCTGTACCGGCCAGAGCAGGGATAC------TGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacaggaggatgccagggtggctagcccaccctcttctgcctcccatagGCAGCAGGGGCTACTGCAGGTTATGAAAGCTTACaACCCTATACCGGCCAGAGCAGGGATATTGTCACTGTCAGGCTCAGGGACCTGTAGCTGCTGTGCTTCTCATGCATCTACCACCAGAGgtgagggaccttgaacctgatctgggaccctcaatccctaatgatccgca Alignment from Spaln_nt2Genome GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACA-CCCTGTACCGGCCAGAGCAGGGAT------ACTGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacaggaggatgccagggtggctagcccaccctcttctgcctcccatagGCAGCAGGGGCTACTGCAGGTTATGAAAGCTTACAACCCTATACCGGCCAGAGCAGGGATATTGTCACTGTCAGGCTCAGGGACCTGTAGCTGCTGTGCTTCTCATGCATCTACCACCAGAGgtgagggaccttgaacctgatctgggaccctcaatccctaatgatccgca Alignment from Pairagon GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTAC-ACCCTGTACCGGCCAGAGCAGGGAT------ACTGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacaggaggatgccagggtggctagcccaccctcttctgcctcccatagGCAGCAGGGGCTACTGCAGGTTATGAAAGCTTACAACCCTATACCGGCCAGAGCAGGGATATTGTCACTGTCAGGCTCAGGGACCTGTAGCTGCTGTGCTTCTCATGCATCTACCACCAGAGgtgagggaccttgaacctgatctgggaccctcaatccctaatgatccgca Alignment from Exonerate_protein2genome GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTAC-ACCCTGTACCGGCCAGAGCAGGGATAC------TGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacaggaggatgccagggtggctagcccaccctcttctgcctcccatagGCAGCAGGGGCTACTGCAGGTTATGAAAGCTTACAACCCTATACCGGCCAGAGCAGGGATATTGTCACTGTCAGGCTCAGGGACCTGTAGCTGCTGTGCTTCTCATGCATCTACCACCAGAGgtgagggaccttgaacctgatctgggaccctcaatccctaatgatccgca Alignment from Exonerate_coding2genome GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTAC-ACCCTGTACCGGCCAGAGCAGGGATAC------TGCCAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacaggaggatgccagggtggctagcccaccctcttctgcctcccatagGCAGCAGGGGCTACTGCAGGTTATGAAAGCTTACAACCCTATACCGGCCAGAGCAGGGATATTGTCACTGTCAGGCTCAGGGACCTGTAGCTGCTGTGCTTCTCATGCATCTACCACCAGAGgtgagggaccttgaacctgatctgggaccctcaatccctaatgatccgca Alignment from GeneWise GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTAC-ACCCTGTACCGGCCAGAGCAGGGATACTGC------CAGGCTCAGGGACCTGTAGCTGCTGTGCTGCTCATGCATCTACCCCCAGAG agacaggaggatgccagggtggctagcccaccctcttctgcctcccatagGCAGCAGGGGCTACTGCAGGTTATGAAAGCTTACAACCCTATACCGGCCAGAGCAGGGATATTGTCACTGTCAGGCTCAGGGACCTGTAGCTGCTGTGCTTCTCATGCATCTACCACCAGAGgtgagggaccttgaacctgatctgggaccctcaatccctaatgatccgca #### Tcirg1_ID173_14 --> 1 - 0 Original Alignment gCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAAT-GTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG cccacagtgggcagtctttgtagggtgcttacttgctgcttttattaaaggCACTTTGGCCAGGCCCACCGGCTGCTGCTTGAGACATTGTCAGAGCTCATCTTCCTCCTGGGCCTC------TACCTTGTGTTCCTGATTGTCTACAAGTGGGTGAATCGTCTCAGCAACTAGTGCTGCCTCTGCCCCC------ATTATTCACTTCATCAATATGTTCCTCTTCTCCCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAGgtaagccatttatagaggatggctgacttcctcactggggttgttctagt Alignment from CESAR gCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAAT-GTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG cccacagtgggcagtctttgtagggtgcttacttgctgcttttattaaaggCACTTTGGCCAGGCCCACCGGCTGCTGCTTGAGACATTGTCAGAGCTCATCTTCCTCCTGGGCCTC------TACCTTGTGTTCCTGATTGTCTACAAGTGGGTGAATCGTCTCAGCAACTAGTGCTGCCTCTGCCCCC------ATTATTCACTTCATCAATATGTTCCTCTTCTCCCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAGgtaagccatttatagaggatggctgacttcctcactggggttgttctagt Alignment from Spaln_aa2Genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAAT-GTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG cccacagtgggcagtctttgtagggtgcttacttgctgcttttattaaagGCACTTTGGCCAGGCCCACCGGCTGCTGCTTGAGACATTGTCAGAGCTCATCTTCCTCCTGGGCCTC------TACCTTGTGTTCCTGATTGTCTACAAGTGGGTGAATcGTCTCAGCAACTAGTGCTGCCTCTGCCCCC------ATTATTCACTTCATCAATATGTTCCTCTTCTCCCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAGgtaagccatttatagaggatggctgacttcctcactggggttgttctagt Alignment from Spaln_nt2Genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAAT-GTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG cccacagtgggcagtctttgtagggtgcttacttgctgcttttattaaagGCACTTTGGCCAGGCCCACCGGCTGCTGCTTGAGACATTGTCAGAGCTCATCTTCCTCCTGGGCCT------CTACCTTGTGTTCCTGATTGTCTACAAGTGGGTGAATCGTCTCAGCAACTAGTGCTGCCTCTGCCCCCA------TTATTCACTTCATCAATATGTTCCTCTTCTCCCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAGgtaagccatttatagaggatggctgacttcctcactggggttgttctagt Alignment from Pairagon GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAAT-GTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG cccacagtgggcagtctttgtagggtgcttacttgctgcttttattaaagGCACTTTGGCCAGGCCCACCGGCTGCTGCTTGAGACATTGTCAGAGCTCATCTTCCTCCTGGGCCT------CTACCTTGTGTTCCTGATTGTCTACAAGTGGGTGAATCGTCTCAGCAACTAGTGCTGCCTCTGCCCCCA------TTATTCACTTCATCAATATGTTCCTCTTCTCCCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAGgtaagccatttatagaggatggctgacttcctcactggggttgttctagt Alignment from Exonerate_protein2genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAAT-GTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG cccacagtgggcagtctttgtagggtgcttacttgctgcttttattaaagGCACTTTGGCCAGGCCCACCGGCTGCTGCTTGAGACATTGTCAGAGCTCATCTTCCTCCTGGGCCTC------TACCTTGTGTTCCTGATTGTCTACAAGTGGGTGAATCGTCTCAGCAACTAGTGCTGCCTCTGCCCCC------ATTATTCACTTCATCAATATGTTCCTCTTCTCCCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAGgtaagccatttatagaggatggctgacttcctcactggggttgttctagt Alignment from Exonerate_coding2genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAAT-GTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG cccacagtgggcagtctttgtagggtgcttacttgctgcttttattaaagGCACTTTGGCCAGGCCCACCGGCTGCTGCTTGAGACATTGTCAGAGCTCATCTTCCTCCTGGGCCTC------TACCTTGTGTTCCTGATTGTCTACAAGTGGGTGAATCGTCTCAGCAACTAGTGCTGCCTCTGCCCCC------ATTATTCACTTCATCAATATGTTCCTCTTCTCCCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAGgtaagccatttatagaggatggctgacttcctcactggggttgttctagt Alignment from GeneWise GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAAT-GTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG cccacagtgggcagtctttgtagggtgcttacttgctgcttttattaaagGCACTTTGGCCAGGCCCACCGGCTGCTGCTTGAGACATTGTCAGAGCTCATCTTCCTCCTGGGCCTC------TACCTTGTGTTCCTGATTGTCTACAAGTGGGTGAATCGTCTCAGCAACTAGTGCTGCCTCTGCCCCC------ATTATTCACTTCATCAATATGTTCCTCTTCTCCCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAGgtaagccatttatagaggatggctgacttcctcactggggttgttctagt #### Tcirg1_ID175_12 --> 1 - 0 Original Alignment tGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGA-CCATATCCCTTTGGCATTGACCCG cagggcacctgaccaattgtgtagctcatcctgctgtctcttgcctttagtGATGAGTATCTATCCCAGCACTCCATGCTAACCCTGAACCCTAACATTACAGGAGTCTTCCTTGGACCCATACCCCTTTGGCATTGAGCCAgtaagagagcatacaagtgcatgggaaagaggtgcctgggaaggcttgtc Alignment from CESAR tGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGA-CCATATCCCTTTGGCATTGACCCG cagggcacctgaccaattgtgtagctcatcctgctgtctcttgcctttagtGATGAGTATCTATCCCAGCACTCCATGCTAACCCTGAACCCTAACATTACAGGAGTCTTCCTTGGACCCATACCCCTTTGGCATTGAGCCAgtaagagagcatacaagtgcatgggaaagaggtgcctgggaaggcttgtc Alignment from Spaln_aa2Genome TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGA-CCATATCCCTTTGGCATTGACCCG cagggcacctgaccaattgtgtagctcatcctgctgtctcttgcctttagTGATGAGTATCTATCCCAGCACTCCATGCTAACCCTGAACCCTAACATTACAGGAGTCTTCCTTGGAcCCATACCCCTTTGGCATTGAGCCAgtaagagagcatacaagtgcatgggaaagaggtgcctgggaaggcttgtc Alignment from Spaln_nt2Genome TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGAC-CATATCCCTTTGGCATTGACCCG cagggcacctgaccaattgtgtagctcatcctgctgtctcttgcctttagTGATGAGTATCTATCCCAGCACTCCATGCTAACCCTGAACCCTAACATTACAGGAGTCTTCCTTGGACCCATACCCCTTTGGCATTGAGCCAgtaagagagcatacaagtgcatgggaaagaggtgcctgggaaggcttgtc Alignment from Pairagon ------------------------------------------------AGTGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGA-CCATATCCCTTTGGCATTGACCCG CAGGGCACCTGACCAATTGTGTAGCTCATCCTGCTGTCTCTTGCCTTTAGTGATGAGTATCTATCCCAGCACTCCATGCTAACCCTGAACCCTAACATTACAGGAGTCTTCCTTGGACCCATACCCCTTTGGCATTGAGCCAgtaagagagcatacaagtgcatgggaaagaggtgcctgggaaggcttgtc Alignment from Exonerate_protein2genome TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGA-CCATATCCCTTTGGCATTGACCCG cagggcacctgaccaattgtgtagctcatcctgctgtctcttgcctttagTGATGAGTATCTATCCCAGCACTCCATGCTAACCCTGAACCCTAACATTACAGGAGTCTTCCTTGGACCCATACCCCTTTGGCATTGAGCCAgtaagagagcatacaagtgcatgggaaagaggtgcctgggaaggcttgtc Alignment from Exonerate_coding2genome TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTTGGA-CCATATCCCTTTGGCATTGACCCG cagggcacctgaccaattgtgtagctcatcctgctgtctcttgcctttagTGATGAGTATCTATCCCAGCACTCCATGCTAACCCTGAACCCTAACATTACAGGAGTCTTCCTTGGACCCATACCCCTTTGGCATTGAGCCAgtaagagagcatacaagtgcatgggaaagaggtgcctgggaaggcttgtc Alignment from GeneWise TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACTGGTGTCTTCCTT-GGACCATATCCCTTTGGCATTGACCCG cagggcacctgaccaattgtgtagctcatcctgctgtctcttgcctttagTGATGAGTATCTATCCCAGCACTCCATGCTAACCCTGAACCCTAACATTACAGGAGTCTTCCTTGGACCCATACCCCTTTGGCATTGAGCCAgtaagagagcatacaagtgcatgggaaagaggtgcctgggaaggcttgtc #### Tcirg1_ID176_11 --> 0 - 2 Original Alignment ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGT-CTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGag aatctaaaccagggaacctatctttttcctctcatttgctctctcatcagATCTGGCAGACCTTCTTCGGAGGTCAATACCTACTCCTCCTTACGGGTCCTGTTCTCTGTCTACACTGGCTTTATCTCCACTGAGTGTTATAGCCAGGCAACTACTATTTTTCCCTCAGGTTGGAGTGTGGCAGCCATGGCCAACCAATCAGGCTGGctgtaaaacctacaatagttgctatgcagccagggcacctgaccaattgtgt Alignment from CESAR ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGT-CTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGag aatctaaaccagggaacctatctttttcctctcatttgctctctcatcagATCTGGCAGACCTTCTTCGGAGGTCAATACCTACTCCTCCTTACGGGTCCTGTTCTCTGTCTACACTGGCTTTATCTCCACTGAGTGTTATAGCCAGGCAACTACTATTTTTCCCTCAGGTTGGAGTGTGGCAGCCATGGCCAACCAATCAGGCTGGctgtaaaacctacaatagttgctatgcagccagggcacctgaccaattgtgt Alignment from Spaln_aa2Genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGT-CTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG aatctaaaccagggaacctatctttttcctctcatttgctctctcatcagATCTGGCAGACCTTCTTCGGAGGTCAATACCTACTCCTCCTTACGGGTcCTGTTCTCTGTCTACACTGGCTTTATCTCCACTGAGTGTTATAGCCAGGCAACTACTATTTTTCCCTCAGGTTGGAGTGTGGCAGCCATGGCCAACCAATCAGGCTGGCTgtaaaacctacaatagttgctatgcagccagggcacctgaccaattgtgt Alignment from Spaln_nt2Genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTC-TGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG aatctaaaccagggaacctatctttttcctctcatttgctctctcatcagATCTGGCAGACCTTCTTCGGAGGTCAATACCTACTCCTCCTTACGGGTCCTGTTCTCTGTCTACACTGGCTTTATCTCCACTGAGTGTTATAGCCAGGCAACTACTATTTTTCCCTCAGGTTGGAGTGTGGCAGCCATGGCCAACCAATCAGGCTGGCTgtaaaacctacaatagttgctatgcagccagggcacctgaccaattgtgt Alignment from Pairagon ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGT-CTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGG---------------------------------------------------- aatctaaaccagggaacctatctttttcctctcatttgctctctcatcagATCTGGCAGACCTTCTTCGGAGGTCAATACCTACTCCTCCTTACGGGTCCTGTTCTCTGTCTACACTGGCTTTATCTCCACTGAGTGTTATAGCCAGGCAACTACTATTTTTCCCTCAGGTTGGAGTGTGGCAGCCATGGCCAACCAATCAGGCTGGCTGTAAAACCTACAATAGTTGCTATGCAGCCAGGGCACCTGACCAATTGTGT Alignment from Exonerate_protein2genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGT-CTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG aatctaaaccagggaacctatctttttcctctcatttgctctctcatcagATCTGGCAGACCTTCTTCGGAGGTCAATACCTACTCCTCCTTACGGGTCCTGTTCTCTGTCTACACTGGCTTTATCTCCACTGAGTGTTATAGCCAGGCAACTACTATTTTTCCCTCAGGTTGGAGTGTGGCAGCCATGGCCAACCAATCAGGCTGGCTgtaaaacctacaatagttgctatgcagccagggcacctgaccaattgtgt Alignment from Exonerate_coding2genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGT-CTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG aatctaaaccagggaacctatctttttcctctcatttgctctctcatcagATCTGGCAGACCTTCTTCGGAGGTCAATACCTACTCCTCCTTACGGGTCCTGTTCTCTGTCTACACTGGCTTTATCTCCACTGAGTGTTATAGCCAGGCAACTACTATTTTTCCCTCAGGTTGGAGTGTGGCAGCCATGGCCAACCAATCAGGCTGGCTgtaaaacctacaatagttgctatgcagccagggcacctgaccaattgtgt Alignment from GeneWise ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGT-CTGTTCTCCGTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG aatctaaaccagggaacctatctttttcctctcatttgctctctcatcagATCTGGCAGACCTTCTTCGGAGGTCAATACCTACTCCTCCTTACGGGTCCTGTTCTCTGTCTACACTGGCTTTATCTCCACTGAGTGTTATAGCCAGGCAACTACTATTTTTCCCTCAGGTTGGAGTGTGGCAGCCATGGCCAACCAATCAGGCTGGCTgtaaaacctacaatagttgctatgcagccagggcacctgaccaattgtgt #### Tcirg1_ID179_8 --> 0 - 0 Original Alignment AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTG-ACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAAgtaggggcccatgtaaactgaagctcaggtttcatctttcttcagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCCGTCTACCTACACCCTCAATCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtatgcatccagcccataggcctgctcctttcggggtacccatgcagcaa Alignment from CESAR AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTG-ACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAAgtaagtgcccatgtaaactgaagctcaggtttcatctttcttcagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCCGTCTACCTACACCCTCAATCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtatgcatccagcccataggcctgctcctttcggggtacccatgcagcaa Alignment from Spaln_aa2Genome AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTG-ACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAAgtaggggcccatgtaaactgaagctcaggtttcatctttcttcagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCCGTCTACCTAcACCCTCAATCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtatgcatccagcccataggcctgctcctttcggggtacccatgcagcaa Alignment from Spaln_nt2Genome AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTG-ACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAAgtaggggcccatgtaaactgaagctcaggtttcatctttcttcagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCCGTCTACCTACACCCTCAATCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtatgcatccagcccataggcctgctcctttcggggtacccatgcagcaa Alignment from Pairagon AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTG-ACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAAgtaggggcccatgtaaactgaagctcaggtttcatctttcttcagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCCGTCTACCTACACCCTCAATCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtatgcatccagcccataggcctgctcctttcggggtacccatgcagcaa Alignment from Exonerate_protein2genome AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTG-ACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAAgtaggggcccatgtaaactgaagctcaggtttcatctttcttcagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCCGTCTACCTACACCCTCAATCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtatgcatccagcccataggcctgctcctttcggggtacccatgcagcaa Alignment from Exonerate_coding2genome AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTG-ACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAAgtaggggcccatgtaaactgaagctcaggtttcatctttcttcagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCCGTCTACCTACACCCTCAATCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtatgcatccagcccataggcctgctcctttcggggtacccatgcagcaa Alignment from GeneWise AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTAC-CTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAAgtaggggcccatgtaaactgaagctcaggtttcatctttcttcagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCTGGGTCGAGTGCAGCAGCTACTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCCGTCTACCTACACCCTCAATCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCAgtatgcatccagcccataggcctgctcctttcggggtacccatgcagcaa #### Tcirg1_ID181_6 --> 0 - 2 Original Alignment CCAGTGACG GGTGAGCCTGCA-ACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACtg CCAGTGACAgtaagtttaaatggaagaccctgcccgctgtgtccccacagGGTGAGCCTGCACACCTGGATGACCTTTGTCATATCCTACTGGGGTGAGCAGATTGGACAGAAGATCCGAAAGATCACAGACtggtgagtaatgaatcctcattgctcagtacaagatgagaccagtcaattcg Alignment from CESAR CCAGTGACG GGTGAGCCTGCA-ACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACtg CCAGTGACAgtaagtttaaatggaagaccctgcccgctgtgtccccacagGGTGAGCCTGCACACCTGGATGACCTTTGTCATATCCTACTGGGGTGAGCAGATTGGACAGAAGATCCGAAAGATCACAGACtggtgagtaatgaatcctcattgctcagtacaagatgagaccagtcaattcg Alignment from Spaln_aa2Genome CCAGTGACG GGTGAGCCTGCA-ACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CCAGTGACAgtaagtttaaatggaagaccctgcccgctgtgtccccacagGGTGAGCCTGCAcACCTGGATGACCTTTGTCATATCCTACTGGGGTGAGCAGATTGGACAGAAGATCCGAAAGATCACAGACTGgtgagtaatgaatcctcattgctcagtacaagatgagaccagtcaattcg Alignment from Spaln_nt2Genome CCAGTGACG GGTGAGCCTGCA-ACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CCAGTGACAgtaagtttaaatggaagaccctgcccgctgtgtccccacagGGTGAGCCTGCACACCTGGATGACCTTTGTCATATCCTACTGGGGTGAGCAGATTGGACAGAAGATCCGAAAGATCACAGACTGgtgagtaatgaatcctcattgctcagtacaagatgagaccagtcaattcg Alignment from Pairagon CCAGTGACG GGTGAGCCTGCA-ACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CCAGTGACAgtaagtttaaatggaagaccctgcccgctgtgtccccacagGGTGAGCCTGCACACCTGGATGACCTTTGTCATATCCTACTGGGGTGAGCAGATTGGACAGAAGATCCGAAAGATCACAGACTGgtgagtaatgaatcctcattgctcagtacaagatgagaccagtcaattcg Alignment from Exonerate_protein2genome CCAGTGACG GGTGAGCCTGCA-ACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CCAGTGACAgtaagtttaaatggaagaccctgcccgctgtgtccccacagGGTGAGCCTGCACACCTGGATGACCTTTGTCATATCCTACTGGGGTGAGCAGATTGGACAGAAGATCCGAAAGATCACAGACTGgtgagtaatgaatcctcattgctcagtacaagatgagaccagtcaattcg Alignment from Exonerate_coding2genome CCAGTGACG GGTGAGCCTGCA-ACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CCAGTGACAgtaagtttaaatggaagaccctgcccgctgtgtccccacagGGTGAGCCTGCACACCTGGATGACCTTTGTCATATCCTACTGGGGTGAGCAGATTGGACAGAAGATCCGAAAGATCACAGACTGgtgagtaatgaatcctcattgctcagtacaagatgagaccagtcaattcg Alignment from GeneWise CCAGTGACG------------GGTGAGCCTGCA------------------------------ACTTGGATGACCTTTGTCATCTCCTACTGGGGTGAGCAGATCGGACAGAAGATCCGAAAGATCACAGACTG CCAGTGACAGTAAGTTTAAATGGAAGACCCTGCCCGCTGTGTCCCCACAGGGTGAGCCTGCACACCTGGATGACCTTTGTCATATCCTACTGGGGTGAGCAGATTGGACAGAAGATCCGAAAGATCACAGACTGgtgagtaatgaatcctcattgctcagtacaagatgagaccagtcaattcg #### Tcirg1_ID183_4 --> 0 - 2 Original Alignment GTGGCAGCTGACCATACTGAAGGACCC-TTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCaa agggcctcaagatgtacatgccagtagttcgcattctttttttgtgatagGTGGCAGCTGATCACACTGAAGGCCCTCTTCTCAGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCTGACCTGAAAGTCaagtttggtggggcagcctagcttttatgggcttcccacatgtgctccctgc Alignment from CESAR GTGGCAGCTGACCATACTGAAGGACCC-TTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCaa agggcctcaagatgtacatgccagtagttcgcattctttttttgtgatagGTGGCAGCTGATCACACTGAAGGCCCTCTTCTCAGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCTGACCTGAAAGTCaagtttggtggggcagcctagcttttatgggcttcccacatgtgctccctgc Alignment from Spaln_aa2Genome GTGGCAGCTGACCATACTGAAGGACCC-TTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA agggcctcaagatgtacatgccagtagttcgcattctttttttgtgatagGTGGCAGCTGATCACACTGAAGGCCCTcTTCTCAGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCTGACCTGAAAGTCAAgtttggtggggcagcctagcttttatgggcttcccacatgtgctccctgc Alignment from Spaln_nt2Genome GTGGCAGCTGACCATACTGAAGGACC-CTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA agggcctcaagatgtacatgccagtagttcgcattctttttttgtgatagGTGGCAGCTGATCACACTGAAGGCCCTCTTCTCAGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCTGACCTGAAAGTCAAgtttggtggggcagcctagcttttatgggcttcccacatgtgctccctgc Alignment from Pairagon GTGGCAGCTGACCATACTGAAGGACC-CTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA agggcctcaagatgtacatgccagtagttcgcattctttttttgtgatagGTGGCAGCTGATCACACTGAAGGCCCTCTTCTCAGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCTGACCTGAAAGTCAAgtttggtggggcagcctagcttttatgggcttcccacatgtgctccctgc Alignment from Exonerate_protein2genome GTGGCAGCTGACCATACTGAAGGACCC-TTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA agggcctcaagatgtacatgccagtagttcgcattctttttttgtgatagGTGGCAGCTGATCACACTGAAGGCCCTCTTCTCAGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCTGACCTGAAAGTCAAgtttggtggggcagcctagcttttatgggcttcccacatgtgctccctgc Alignment from Exonerate_coding2genome GTGGCAGCTGACCATACTGAAGGACCC-TTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA agggcctcaagatgtacatgccagtagttcgcattctttttttgtgatagGTGGCAGCTGATCACACTGAAGGCCCTCTTCTCAGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCTGACCTGAAAGTCAAgtttggtggggcagcctagcttttatgggcttcccacatgtgctccctgc Alignment from GeneWise GTGGCAGCTGACCATACTGAAGGACCC-TTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA agggcctcaagatgtacatgccagtagttcgcattctttttttgtgatagGTGGCAGCTGATCACACTGAAGGCCCTCTTCTCAGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCTGACCTGAAAGTCAAgtttggtggggcagcctagcttttatgggcttcccacatgtgctccctgc #### Tcirg1_ID185_2 --> 0 - 1 Original Alignment CTCAACGAATCCGTGAGCGCCTTC-CAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTa atcccttctgagaggttctgatacatatcctctgtgtcctcttgtaacagTTCAATGAATCTGTGAGTGCATTCCCAGAGACGCTTTGTGGTAGATGTCCGGCACTGTGAGGAACTGGAAAAGACATTTagtgaggtggactcattcacatcccatggcaggcttggtctgaaggagagt Alignment from CESAR CTCAACGAATCCGTGAGCGCCTTC-CAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTa atcccttctgagaggttctgatacatatcctctgtgtcctcttgtaacagTTCAATGAATCTGTGAGTGCATTCCCAGAGACGCTTTGTGGTAGATGTCCGGCACTGTGAGGAACTGGAAAAGACATTTagtgaggtggactcattcacatcccatggcaggcttggtctgaaggagagt Alignment from Spaln_aa2Genome CTCAACGAATCCGTGAGCGCCTTC-CAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA atcccttctgagaggttctgatacatatcctctgtgtcctcttgtaacagTTCAATGAATCTGTGAGTGCATTCcCAGAGACGCTTTGTGGTAGATGTCCGGCACTGTGAGGAACTGGAAAAGACATTTAgtgaggtggactcattcacatcccatggcaggcttggtctgaaggagagt Alignment from Spaln_nt2Genome CTCAACGAATCCGTGAGCGCCTTCC-AGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA atcccttctgagaggttctgatacatatcctctgtgtcctcttgtaacagTTCAATGAATCTGTGAGTGCATTCCCAGAGACGCTTTGTGGTAGATGTCCGGCACTGTGAGGAACTGGAAAAGACATTTAgtgaggtggactcattcacatcccatggcaggcttggtctgaaggagagt Alignment from Pairagon CTCAACGAATCCGTGAGCGCCTT-CCAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA atcccttctgagaggttctgatacatatcctctgtgtcctcttgtaacagTTCAATGAATCTGTGAGTGCATTCCCAGAGACGCTTTGTGGTAGATGTCCGGCACTGTGAGGAACTGGAAAAGACATTTAgtgaggtggactcattcacatcccatggcaggcttggtctgaaggagagt Alignment from Exonerate_protein2genome CTCAACGAATCCGTGAGCGCCTTC-CAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA atcccttctgagaggttctgatacatatcctctgtgtcctcttgtaacagTTCAATGAATCTGTGAGTGCATTCCCAGAGACGCTTTGTGGTAGATGTCCGGCACTGTGAGGAACTGGAAAAGACATTTAgtgaggtggactcattcacatcccatggcaggcttggtctgaaggagagt Alignment from Exonerate_coding2genome CTCAACGAATCCGTGAGCGCCTTC-CAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA atcccttctgagaggttctgatacatatcctctgtgtcctcttgtaacagTTCAATGAATCTGTGAGTGCATTCCCAGAGACGCTTTGTGGTAGATGTCCGGCACTGTGAGGAACTGGAAAAGACATTTAgtgaggtggactcattcacatcccatggcaggcttggtctgaaggagagt Alignment from GeneWise CTCAACGAATCCGTGAGCGCCTTC-CAGAGACGCTTCGTGGTAGACGTCCGGCGCTGCGAGGAACTGGAGAAGACGTTTA atcccttctgagaggttctgatacatatcctctgtgtcctcttgtaacagTTCAATGAATCTGTGAGTGCATTCCCAGAGACGCTTTGTGGTAGATGTCCGGCACTGTGAGGAACTGGAAAAGACATTTAgtgaggtggactcattcacatcccatggcaggcttggtctgaaggagagt #### Tctn3_ID7990_11 --> 0 - 2 Original Alignment ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCA-GTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAag aacacactgatctctcacacaggcccacttaagcgacctctcttgcctagATGACCCTGTTGCAGAGTGAGGGTAATGGGCTTTGCTCTGCTAAGAGACATGCACGTACAGTTTGGTGTGAATGCATTATCTGGATGCCAATTAaggtaagtatttgcctgagacgacatcctgccagtggaacttaagtgctgtg Alignment from CESAR ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCA-GTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAag aacacactgatctctcacacaggcccacttaagcgacctctcttgcctagATGACCCTGTTGCAGAGTGAGGGTAATGGGCTTTGCTCTGCTAAGAGACATGCACGTACAGTTTGGTGTGAATGCATTATCTGGATGCCAATTAaggtaagtatttgcctgagacgacatcctgccagtggaacttaagtgctgtg Alignment from Spaln_aa2Genome ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCA-GTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG aacacactgatctctcacacaggcccacttaagcgacctctcttgcctagATGACCCTGTTGCAGAGTGAGGGTAATGGGCTTTGCTCTGCTAAGAGACATGCAcGTACAGTTTGGTGTGAATGCATTATCTGGATGCCAATTAAGgtaagtatttgcctgagacgacatcctgccagtggaacttaagtgctgtg Alignment from Spaln_nt2Genome ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCA-GTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG aacacactgatctctcacacaggcccacttaagcgacctctcttgcctagATGACCCTGTTGCAGAGTGAGGGTAATGGGCTTTGCTCTGCTAAGAGACATGCACGTACAGTTTGGTGTGAATGCATTATCTGGATGCCAATTAAGgtaagtatttgcctgagacgacatcctgccagtggaacttaagtgctgtg Alignment from Pairagon ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCA-GTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG aacacactgatctctcacacaggcccacttaagcgacctctcttgcctagATGACCCTGTTGCAGAGTGAGGGTAATGGGCTTTGCTCTGCTAAGAGACATGCACGTACAGTTTGGTGTGAATGCATTATCTGGATGCCAATTAAGgtaagtatttgcctgagacgacatcctgccagtggaacttaagtgctgtg Alignment from Exonerate_protein2genome ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCA-GTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG aacacactgatctctcacacaggcccacttaagcgacctctcttgcctagATGACCCTGTTGCAGAGTGAGGGTAATGGGCTTTGCTCTGCTAAGAGACATGCACGTACAGTTTGGTGTGAATGCATTATCTGGATGCCAATTAAGgtaagtatttgcctgagacgacatcctgccagtggaacttaagtgctgtg Alignment from Exonerate_coding2genome ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCA-GTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG aacacactgatctctcacacaggcccacttaagcgacctctcttgcctagATGACCCTGTTGCAGAGTGAGGGTAATGGGCTTTGCTCTGCTAAGAGACATGCACGTACAGTTTGGTGTGAATGCATTATCTGGATGCCAATTAAGgtaagtatttgcctgagacgacatcctgccagtggaacttaagtgctgtg Alignment from GeneWise ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACAC-GCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG aacacactgatctctcacacaggcccacttaagcgacctctcttgcctagATGACCCTGTTGCAGAGTGAGGGTAATGGGCTTTGCTCTGCTAAGAGACATGCACGTACAGTTTGGTGTGAATGCATTATCTGGATGCCAATTAAGgtaagtatttgcctgagacgacatcctgccagtggaacttaagtgctgtg #### Tctn3_ID7995_6 --> 2 - 0 Original Alignment gtTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCC-TCTTACTATAACTTCAGAGTCTTGAAG ctcacttactggggctgtcatccccttacgtttgtttgtcatgcccatagggTTTCTAGAGACTAAAAGCACAACATCTCCCCGTTTCTTTAAGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCAGTCCTCATATTATAACTTCAGAGTCTTGAAGgtgagtcacaccacctttctcactccttcagattctcctcacttgaatta Alignment from CESAR gtTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCT-GCCTCTTACTATAACTTCAGAGTCTTGAAG ctcacttactggggctgtcatccccttacgtttgtttgtcatgcccatagggTTTCTAGAGACTAAAAGCACAACATCTCCCCGTTTCTTTAAGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCAGTCCTCATATTATAACTTCAGAGTCTTGAAGgtgagtcacaccacctttctcactccttcagattctcctcacttgaatta Alignment from Spaln_aa2Genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCT-GCCTCTTACTATAACTTCAGAGTCTTGAAG ctcacttactggggctgtcatccccttacgtttgtttgtcatgcccatagGGTTTCTAGAGACTAAAAGCACAACATCTCCCCGTTTCTTTAAGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCAgTCCTCATATTATAACTTCAGAGTCTTGAAGgtgagtcacaccacctttctcactccttcagattctcctcacttgaatta Alignment from Spaln_nt2Genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTG-CCTCTTACTATAACTTCAGAGTCTTGAAG ctcacttactggggctgtcatccccttacgtttgtttgtcatgcccatagGGTTTCTAGAGACTAAAAGCACAACATCTCCCCGTTTCTTTAAGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCAGTCCTCATATTATAACTTCAGAGTCTTGAAGgtgagtcacaccacctttctcactccttcagattctcctcacttgaatta Alignment from Pairagon GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTG-CCTCTTACTATAACTTCAGAGTCTTGAAG ctcacttactggggctgtcatccccttacgtttgtttgtcatgcccatagGGTTTCTAGAGACTAAAAGCACAACATCTCCCCGTTTCTTTAAGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCAGTCCTCATATTATAACTTCAGAGTCTTGAAGgtgagtcacaccacctttctcactccttcagattctcctcacttgaatta Alignment from Exonerate_protein2genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCT-GCCTCTTACTATAACTTCAGAGTCTTGAAG ctcacttactggggctgtcatccccttacgtttgtttgtcatgcccatagGGTTTCTAGAGACTAAAAGCACAACATCTCCCCGTTTCTTTAAGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCAGTCCTCATATTATAACTTCAGAGTCTTGAAGgtgagtcacaccacctttctcactccttcagattctcctcacttgaatta Alignment from Exonerate_coding2genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCT-GCCTCTTACTATAACTTCAGAGTCTTGAAG ctcacttactggggctgtcatccccttacgtttgtttgtcatgcccatagGGTTTCTAGAGACTAAAAGCACAACATCTCCCCGTTTCTTTAAGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCAGTCCTCATATTATAACTTCAGAGTCTTGAAGgtgagtcacaccacctttctcactccttcagattctcctcacttgaatta Alignment from GeneWise GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCT-GCCTCTTACTATAACTTCAGAGTCTTGAAG ctcacttactggggctgtcatccccttacgtttgtttgtcatgcccatagGGTTTCTAGAGACTAAAAGCACAACATCTCCCCGTTTCTTTAAGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCAGTCCTCATATTATAACTTCAGAGTCTTGAAGgtgagtcacaccacctttctcactccttcagattctcctcacttgaatta #### Tctn3_ID7996_5 --> 0 - 1 Original Alignment GCTGGGGATCCCATCCTGACCTACTACCCGAGC-TGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAg ttgccttggtcattgaatcaagtcccactggggggatgtggggactgcagGCTGGGGATCCCATCCTGACCTACTACCCAAGTCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCTGTGGGAGCTGGGGGACTTTGTGCGGAGAGCAACCCTGCAggtaagtccagtgcaggtgtgcactggcctctggctttctcttgtgagtct Alignment from CESAR GCTGGGGATCCCATCCTGACCTACTACCCGAGC-TGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAg ttgccttggtcattgaatcaagtcccactggggggatgtggggactgcagGCTGGGGATCCCATCCTGACCTACTACCCAAGTCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCTGTGGGAGCTGGGGGACTTTGTGCGGAGAGCAACCCTGCAggtaagtccagtgcaggtgtgcactggcctctggctttctcttgtgagtct Alignment from Spaln_aa2Genome GCTGGGGATCCCATCCTGACCTACTACCCGAGC-TGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG ttgccttggtcattgaatcaagtcccactggggggatgtggggactgcagGCTGGGGATCCCATCCTGACCTACTACCCAAGTcTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCTGTGGGAGCTGGGGGACTTTGTGCGGAGAGCAACCCTGCAGgtaagtccagtgcaggtgtgcactggcctctggctttctcttgtgagtct Alignment from Spaln_nt2Genome GCTGGGGATCCCATCCTGACCTACTACCCGAG-CTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG ttgccttggtcattgaatcaagtcccactggggggatgtggggactgcagGCTGGGGATCCCATCCTGACCTACTACCCAAGTCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCTGTGGGAGCTGGGGGACTTTGTGCGGAGAGCAACCCTGCAGgtaagtccagtgcaggtgtgcactggcctctggctttctcttgtgagtct Alignment from Pairagon GCTGGGGATCCCATCCTGACCTACTACCCGAG-CTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG ttgccttggtcattgaatcaagtcccactggggggatgtggggactgcagGCTGGGGATCCCATCCTGACCTACTACCCAAGTCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCTGTGGGAGCTGGGGGACTTTGTGCGGAGAGCAACCCTGCAGgtaagtccagtgcaggtgtgcactggcctctggctttctcttgtgagtct Alignment from Exonerate_protein2genome GCTGGGGATCCCATCCTGACCTACTACCCGAGC-TGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG ttgccttggtcattgaatcaagtcccactggggggatgtggggactgcagGCTGGGGATCCCATCCTGACCTACTACCCAAGTCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCTGTGGGAGCTGGGGGACTTTGTGCGGAGAGCAACCCTGCAGgtaagtccagtgcaggtgtgcactggcctctggctttctcttgtgagtct Alignment from Exonerate_coding2genome GCTGGGGATCCCATCCTGACCTACTACCCGAGC-TGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG ttgccttggtcattgaatcaagtcccactggggggatgtggggactgcagGCTGGGGATCCCATCCTGACCTACTACCCAAGTCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCTGTGGGAGCTGGGGGACTTTGTGCGGAGAGCAACCCTGCAGgtaagtccagtgcaggtgtgcactggcctctggctttctcttgtgagtct Alignment from GeneWise GCTGGGGATCCCATCCTGACCTACTACCCG-AGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG ttgccttggtcattgaatcaagtcccactggggggatgtggggactgcagGCTGGGGATCCCATCCTGACCTACTACCCAAGTCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCTGTGGGAGCTGGGGGACTTTGTGCGGAGAGCAACCCTGCAGgtaagtccagtgcaggtgtgcactggcctctggctttctcttgtgagtct #### Tex40_ID1868_4 --> 0 - 1 Original Alignment CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTG-GATATTCTCAAAAAAGCCCTCATCa accacttcagctccataggattggttgactgccttctgtgacttaaccagCTGCCTCTCCCCCTCATGGAGTTCATGGAGAGTGAAGTTTTGCTATATCCTCAAAAAAGCCCTCATTagtgaggactgtaccctacccctagcctccacaaacaactgtgtggtggct Alignment from CESAR CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTG-GATATTCTCAAAAAAGCCCTCATCa accacttcagctccataggattggttgactgccttctgtgacttaaccagCTGCCTCTCCCCCTCATGGAGTTCATGGAGAGTGAAGTTTTGCTATATCCTCAAAAAAGCCCTCATTagtgaggactgtaccctacccctagcctccacaaacaactgtgtggtggct Alignment from Spaln_aa2Genome CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTG-GATATTCTCAAAAAAGCCCTCATCA accacttcagctccataggattggttgactgccttctgtgacttaaccagCTGCCTCTCCCCCTCATGGAGTTCATGGAGAGTGAAGTTTTGcTATATCCTCAAAAAAGCCCTCATTAgtgaggactgtaccctacccctagcctccacaaacaactgtgtggtggct Alignment from Spaln_nt2Genome CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTGG-ATATTCTCAAAAAAGCCCTCATCA accacttcagctccataggattggttgactgccttctgtgacttaaccagCTGCCTCTCCCCCTCATGGAGTTCATGGAGAGTGAAGTTTTGCTATATCCTCAAAAAAGCCCTCATTAgtgaggactgtaccctacccctagcctccacaaacaactgtgtggtggct Alignment from Pairagon CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTGG-ATATTCTCAAAAAAGCCCTCATCA accacttcagctccataggattggttgactgccttctgtgacttaaccagCTGCCTCTCCCCCTCATGGAGTTCATGGAGAGTGAAGTTTTGCTATATCCTCAAAAAAGCCCTCATTAgtgaggactgtaccctacccctagcctccacaaacaactgtgtggtggct Alignment from Exonerate_protein2genome CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTG-GATATTCTCAAAAAAGCCCTCATCA accacttcagctccataggattggttgactgccttctgtgacttaaccagCTGCCTCTCCCCCTCATGGAGTTCATGGAGAGTGAAGTTTTGCTATATCCTCAAAAAAGCCCTCATTAgtgaggactgtaccctacccctagcctccacaaacaactgtgtggtggct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTGCCTCTGCCTCTGATGGAGCTCATGGAGACTGAAGTTCTG-GATATTCTCAAAAAAGCCCTCATCA accacttcagctccataggattggttgactgccttctgtgacttaaccagCTGCCTCTCCCCCTCATGGAGTTCATGGAGAGTGAAGTTTTGCTATATCCTCAAAAAAGCCCTCATTAgtgaggactgtaccctacccctagcctccacaaacaactgtgtggtggct #### Tle4_ID3619_18 --> 0 - 1 Original Alignment ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTG-CATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTg gcttcatgagagatgtgtgctgacacccttccctttttggaatacatcagATTTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAACAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTggtaggcaaactcctgtttttcagtttctgtaatatgaatgattgcttggt Alignment from CESAR ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTG-CATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTg gcttcatgagagatgtgtgctgacacccttccctttttggaatacatcagATTTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAACAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTggtaggcaaactcctgtttttcagtttctgtaatatgaatgattgcttggt Alignment from Spaln_aa2Genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTG-CATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG gcttcatgagagatgtgtgctgacacccttccctttttggaatacatcagATTTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAACAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGcCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTGgtaggcaaactcctgtttttcagtttctgtaatatgaatgattgcttggt Alignment from Spaln_nt2Genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTG-CATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG gcttcatgagagatgtgtgctgacacccttccctttttggaatacatcagATTTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAACAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTGgtaggcaaactcctgtttttcagtttctgtaatatgaatgattgcttggt Alignment from Pairagon ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTG-CATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG gcttcatgagagatgtgtgctgacacccttccctttttggaatacatcagATTTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAACAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTGgtaggcaaactcctgtttttcagtttctgtaatatgaatgattgcttggt Alignment from Exonerate_protein2genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTG-CATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG gcttcatgagagatgtgtgctgacacccttccctttttggaatacatcagATTTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAACAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTGgtaggcaaactcctgtttttcagtttctgtaatatgaatgattgcttggt Alignment from Exonerate_coding2genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTG-CATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG gcttcatgagagatgtgtgctgacacccttccctttttggaatacatcagATTTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAACAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTGgtaggcaaactcctgtttttcagtttctgtaatatgaatgattgcttggt Alignment from GeneWise ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAG-TTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG gcttcatgagagatgtgtgctgacacccttccctttttggaatacatcagATTTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAACAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCAGTTGCCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTGgtaggcaaactcctgtttttcagtttctgtaatatgaatgattgcttggt #### Tm7sf2_ID1411_9 --> 2 - 1 Original Alignment gtCTTGAGACCATCCCGACTGCCACGGGGAGG-CAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTg tgcctaactgaactcgagggcctgtagcgagaagacttgtattcttataggtCTAGACACCATCCCCACTGCCACAGGAAGACCATCTGCTGGTGTCTGGGTGGTGGGGTATGGTCCGGCATCCCAACTACCTAGGAGACCTCATCATGGCTCTGGCTTGGTCTTTGCCCTGTggtatgagggtcttgggggagtgaggtcaatgtgcctgctgagagccttga Alignment from CESAR gtCTTGAGACCATCCCGACTGCCACGGGGAGG-CAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTg tgcctaactgaactcgagggcctgtagcgagaagacttgtattcttataggtCTAGACACCATCCCCACTGCCACAGGAAGACCATCTGCTGGTGTCTGGGTGGTGGGGTATGGTCCGGCATCCCAACTACCTAGGAGACCTCATCATGGCTCTGGCTTGGTCTTTGCCCTGTggtatgagggtcttgggggagtgaggtcaatgtgcctgctgagagccttga Alignment from Spaln_aa2Genome GTCTTGAGACCATCCCGACTGCCACGGGGAGG-CAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG tgcctaactgaactcgagggcctgtagcgagaagacttgtattcttatagGTCTAGACACCATCCCCACTGCCACAGGAAGAcCATCTGCTGGTGTCTGGGTGGTGGGGTATGGTCCGGCATCCCAACTACCTAGGAGACCTCATCATGGCTCTGGCTTGGTCTTTGCCCTGTGgtatgagggtcttgggggagtgaggtcaatgtgcctgctgagagccttga Alignment from Spaln_nt2Genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGC-AGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG tgcctaactgaactcgagggcctgtagcgagaagacttgtattcttatagGTCTAGACACCATCCCCACTGCCACAGGAAGACCATCTGCTGGTGTCTGGGTGGTGGGGTATGGTCCGGCATCCCAACTACCTAGGAGACCTCATCATGGCTCTGGCTTGGTCTTTGCCCTGTGgtatgagggtcttgggggagtgaggtcaatgtgcctgctgagagccttga Alignment from Pairagon GTCTTGAGACCATCCCGACTGCCACGGGGAGG-CAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG tgcctaactgaactcgagggcctgtagcgagaagacttgtattcttatagGTCTAGACACCATCCCCACTGCCACAGGAAGACCATCTGCTGGTGTCTGGGTGGTGGGGTATGGTCCGGCATCCCAACTACCTAGGAGACCTCATCATGGCTCTGGCTTGGTCTTTGCCCTGTGgtatgagggtcttgggggagtgaggtcaatgtgcctgctgagagccttga Alignment from Exonerate_protein2genome GTCTTGAGACCATCCCGACTGCCACGGGGAGG-CAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG tgcctaactgaactcgagggcctgtagcgagaagacttgtattcttatagGTCTAGACACCATCCCCACTGCCACAGGAAGACCATCTGCTGGTGTCTGGGTGGTGGGGTATGGTCCGGCATCCCAACTACCTAGGAGACCTCATCATGGCTCTGGCTTGGTCTTTGCCCTGTGgtatgagggtcttgggggagtgaggtcaatgtgcctgctgagagccttga Alignment from Exonerate_coding2genome GTCTTGAGACCATCCCGACTGCCACGGGGAGG-CAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG tgcctaactgaactcgagggcctgtagcgagaagacttgtattcttatagGTCTAGACACCATCCCCACTGCCACAGGAAGACCATCTGCTGGTGTCTGGGTGGTGGGGTATGGTCCGGCATCCCAACTACCTAGGAGACCTCATCATGGCTCTGGCTTGGTCTTTGCCCTGTGgtatgagggtcttgggggagtgaggtcaatgtgcctgctgagagccttga Alignment from GeneWise --CTTGAGACCATCCCGACTGCCACGGGGAGG-CAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG tgcctaactgaactcgagggcctgtagcgagaagacttgtattcttatagGTCTAGACACCATCCCCACTGCCACAGGAAGACCATCTGCTGGTGTCTGGGTGGTGGGGTATGGTCCGGCATCCCAACTACCTAGGAGACCTCATCATGGCTCTGGCTTGGTCTTTGCCCTGTGgtatgagggtcttgggggagtgaggtcaatgtgcctgctgagagccttga #### Tm7sf2_ID1413_7 --> 0 - 1 Original Alignment GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCC-ATGGCCTTGCTCATCTGCCTCCTTAAGg tgtgaggacatcaactgtgctaacccaagattctttctggtgtatttcagGAGTCTGTCCTCACCACCATGGACATCATACATGATGGTTTTGGCTTTATGCTGGTCTTTGGAGATCTAGCCTGGATACCACTAACCTACAGCCTGCAGGCCCAGTTCCTTTTGTACCATCCACAACCCCTGGGGTTACCACATGGCCTTGCTCATCTGCCTACTTAGGggtcagaattagataccctcaatgccccctccccttccatccatgttgtgt Alignment from CESAR GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCC-ATGGCCTTGCTCATCTGCCTCCTTAAGg tgtgaggacatcaactgtgctaacccaagattctttctggtgtatttcagGAGTCTGTCCTCACCACCATGGACATCATACATGATGGTTTTGGCTTTATGCTGGTCTTTGGAGATCTAGCCTGGATACCACTAACCTACAGCCTGCAGGCCCAGTTCCTTTTGTACCATCCACAACCCCTGGGGTTACCACATGGCCTTGCTCATCTGCCTACTTAGGggtcagaattagataccctcaatgccccctccccttccatccatgttgtgt Alignment from Spaln_aa2Genome GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCC-ATGGCCTTGCTCATCTGCCTCCTTAAGG tgtgaggacatcaactgtgctaacccaagattctttctggtgtatttcagGAGTCTGTCCTCACCACCATGGACATCATACATGATGGTTTTGGCTTTATGCTGGTCTTTGGAGATCTAGCCTGGATACCACTAACCTACAGCCTGCAGGCCCAGTTCCTTTTGTACCATCCACAACCCCTGGGGTTACCAcATGGCCTTGCTCATCTGCCTACTTAGGGgtcagaattagataccctcaatgccccctccccttccatccatgttgtgt Alignment from Spaln_nt2Genome GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCC-CATGGCCTTGCTCATCTGCCTCCTTAAGG tgtgaggacatcaactgtgctaacccaagattctttctggtgtatttcagGAGTCTGTCCTCACCACCATGGACATCATACATGATGGTTTTGGCTTTATGCTGGTCTTTGGAGATCTAGCCTGGATACCACTAACCTACAGCCTGCAGGCCCAGTTCCTTTTGTACCATCCACAACCCCTGGGGTTACCACATGGCCTTGCTCATCTGCCTACTTAGGGgtcagaattagataccctcaatgccccctccccttccatccatgttgtgt Alignment from Pairagon GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCC-CATGGCCTTGCTCATCTGCCTCCTTAAGG tgtgaggacatcaactgtgctaacccaagattctttctggtgtatttcagGAGTCTGTCCTCACCACCATGGACATCATACATGATGGTTTTGGCTTTATGCTGGTCTTTGGAGATCTAGCCTGGATACCACTAACCTACAGCCTGCAGGCCCAGTTCCTTTTGTACCATCCACAACCCCTGGGGTTACCACATGGCCTTGCTCATCTGCCTACTTAGGGgtcagaattagataccctcaatgccccctccccttccatccatgttgtgt Alignment from Exonerate_protein2genome GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCC-ATGGCCTTGCTCATCTGCCTCCTTAAGG tgtgaggacatcaactgtgctaacccaagattctttctggtgtatttcagGAGTCTGTCCTCACCACCATGGACATCATACATGATGGTTTTGGCTTTATGCTGGTCTTTGGAGATCTAGCCTGGATACCACTAACCTACAGCCTGCAGGCCCAGTTCCTTTTGTACCATCCACAACCCCTGGGGTTACCACATGGCCTTGCTCATCTGCCTACTTAGGGgtcagaattagataccctcaatgccccctccccttccatccatgttgtgt Alignment from Exonerate_coding2genome GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCC-ATGGCCTTGCTCATCTGCCTCCTTAAGG tgtgaggacatcaactgtgctaacccaagattctttctggtgtatttcagGAGTCTGTCCTCACCACCATGGACATCATACATGATGGTTTTGGCTTTATGCTGGTCTTTGGAGATCTAGCCTGGATACCACTAACCTACAGCCTGCAGGCCCAGTTCCTTTTGTACCATCCACAACCCCTGGGGTTACCACATGGCCTTGCTCATCTGCCTACTTAGGGgtcagaattagataccctcaatgccccctccccttccatccatgttgtgt Alignment from GeneWise GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCC-ATGGCCTTGCTCATCTGCCTCCTTAAGG tgtgaggacatcaactgtgctaacccaagattctttctggtgtatttcagGAGTCTGTCCTCACCACCATGGACATCATACATGATGGTTTTGGCTTTATGCTGGTCTTTGGAGATCTAGCCTGGATACCACTAACCTACAGCCTGCAGGCCCAGTTCCTTTTGTACCATCCACAACCCCTGGGGTTACCACATGGCCTTGCTCATCTGCCTACTTAGGGgtcagaattagataccctcaatgccccctccccttccatccatgttgtgt #### Tm7sf2_ID1416_4 --> 2 - 1 Original Alignment gcTTCCAGGCTCTGGTGCTAACAGCCCTGTTG-ATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAg ctttcttagtatgtaagccacccctggcctgaagcaccctctccttacaggtTTCCAGGCTGTGGTGCTATCAGCTCTGTTGCATGGGGCTGGGTGTGTCAGTGGGGCTCCCCCTGGGGGGACTACCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTCGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTCCTGGGGGAAACTCAggtaagtagggtcccaaccaagtctcagcggatgaggtagcagggatgcat Alignment from CESAR gcTTCCAGGCTCTGGTGCTAACAGCCCTGTTG-ATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAg ctttcttagtatgtaagccacccctggcctgaagcaccctctccttacaggtTTCCAGGCTGTGGTGCTATCAGCTCTGTTGCATGGGGCTGGGTGTGTCAGTGGGGCTCCCCCTGGGGGGACTACCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTCGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTCCTGGGGGAAACTCAggtaagtagggtcccaaccaagtctcagcggatgaggtagcagggatgcat Alignment from Spaln_aa2Genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTG-ATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcttagtatgtaagccacccctggcctgaagcaccctctccttacagGTTTCCAGGCTGTGGTGCTATCAGCTCTGTTGcATGGGGCTGGGTGTGTCAGTGGGGCTCCCCCTGGGGGGACTACCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTCGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTCCTGGGGGAAACTCAGgtaagtagggtcccaaccaagtctcagcggatgaggtagcagggatgcat Alignment from Spaln_nt2Genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTG-ATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcttagtatgtaagccacccctggcctgaagcaccctctccttacagGTTTCCAGGCTGTGGTGCTATCAGCTCTGTTGCATGGGGCTGGGTGTGTCAGTGGGGCTCCCCCTGGGGGGACTACCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTCGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTCCTGGGGGAAACTCAGgtaagtagggtcccaaccaagtctcagcggatgaggtagcagggatgcat Alignment from Pairagon GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTG-ATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcttagtatgtaagccacccctggcctgaagcaccctctccttacagGTTTCCAGGCTGTGGTGCTATCAGCTCTGTTGCATGGGGCTGGGTGTGTCAGTGGGGCTCCCCCTGGGGGGACTACCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTCGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTCCTGGGGGAAACTCAGgtaagtagggtcccaaccaagtctcagcggatgaggtagcagggatgcat Alignment from Exonerate_protein2genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTG-ATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcttagtatgtaagccacccctggcctgaagcaccctctccttacagGTTTCCAGGCTGTGGTGCTATCAGCTCTGTTGCATGGGGCTGGGTGTGTCAGTGGGGCTCCCCCTGGGGGGACTACCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTCGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTCCTGGGGGAAACTCAGgtaagtagggtcccaaccaagtctcagcggatgaggtagcagggatgcat Alignment from Exonerate_coding2genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTG-ATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcttagtatgtaagccacccctggcctgaagcaccctctccttacagGTTTCCAGGCTGTGGTGCTATCAGCTCTGTTGCATGGGGCTGGGTGTGTCAGTGGGGCTCCCCCTGGGGGGACTACCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTCGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTCCTGGGGGAAACTCAGgtaagtagggtcccaaccaagtctcagcggatgaggtagcagggatgcat Alignment from GeneWise GCTTCCAGGCTCTGGTGCTAACAGCCCTG-TTGATGGGGCTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcttagtatgtaagccacccctggcctgaagcaccctctccttacagGTTTCCAGGCTGTGGTGCTATCAGCTCTGTTGCATGGGGCTGGGTGTGTCAGTGGGGCTCCCCCTGGGGGGACTACCTGGAATGCTCCTGCCCTTGGCCTTCGCAACCACTCTCACCAGCTTCGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTCCTGGGGGAAACTCAGgtaagtagggtcccaaccaagtctcagcggatgaggtagcagggatgcat #### Tm7sf2_ID1418_2 --> 2 - 0 Original Alignment gcGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTG-CCTGCACGCAAG tgagagagtgcttggaagcagtcaggttgattccttccttttccatttaggtGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACCTCCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACTCCTGGCCCTACCAGCCTATCTGCCTGGGCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGTTGTTCATCTGGCTCGGCCTGCAGGTGGCACTCTATTTGCTGCCCTGCATGCAAGgtaagggatctgtcgcaacataggaaggatatgcggtgaaatgatcctcg Alignment from CESAR gcGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTG-CCTGCACGCAAG tgagagagtgcttggaagcagtcaggttgattccttccttttccatttaggtGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACCTCCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACTCCTGGCCCTACCAGCCTATCTGCCTGGGCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGTTGTTCATCTGGCTCGGCCTGCAGGTGGCACTCTATTTGCTGCCCTGCATGCAAGgtaagggatctgtcgcaacataggaaggatatgcggtgaaatgatcctcg Alignment from Spaln_aa2Genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG- tgagagagtgcttggaagcagtcaggttgattccttccttttccatttagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACCTCCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACTCCTGGCCCTACCAGCCTATCTGCCTGGGCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGTTGTTCATCTGGCTCGGCCTGCAGGTGGCACTCTATTTGCTGCCCTGCATGCAAGgtaagggatctgtcgcaacataggaaggatatgcggtgaaatgatcctcg Alignment from Spaln_nt2Genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCC-TGCACGCAAG tgagagagtgcttggaagcagtcaggttgattccttccttttccatttagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACCTCCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACTCCTGGCCCTACCAGCCTATCTGCCTGGGCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGTTGTTCATCTGGCTCGGCCTGCAGGTGGCACTCTATTTGCTGCCCTGCATGCAAGgtaagggatctgtcgcaacataggaaggatatgcggtgaaatgatcctcg Alignment from Pairagon GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTG-CCTGCACGCAAG tgagagagtgcttggaagcagtcaggttgattccttccttttccatttagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACCTCCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACTCCTGGCCCTACCAGCCTATCTGCCTGGGCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGTTGTTCATCTGGCTCGGCCTGCAGGTGGCACTCTATTTGCTGCCCTGCATGCAAGgtaagggatctgtcgcaacataggaaggatatgcggtgaaatgatcctcg Alignment from Exonerate_protein2genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAGG tgagagagtgcttggaagcagtcaggttgattccttccttttccatttagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACCTCCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACTCCTGGCCCTACCAGCCTATCTGCCTGGGCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGTTGTTCATCTGGCTCGGCCTGCAGGTGGCACTCTATTTGCTGCCCTGCATGCAAGgtaagggatctgtcgcaacataggaaggatatgcggtgaaatgatcctcg Alignment from Exonerate_coding2genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAGG tgagagagtgcttggaagcagtcaggttgattccttccttttccatttagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACCTCCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACTCCTGGCCCTACCAGCCTATCTGCCTGGGCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGTTGTTCATCTGGCTCGGCCTGCAGGTGGCACTCTATTTGCTGCCCTGCATGCAAGgtaagggatctgtcgcaacataggaaggatatgcggtgaaatgatcctcg Alignment from GeneWise GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAG------------ tgagagagtgcttggaagcagtcaggttgattccttccttttccatttagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACCTCCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACTCCTGGCCCTACCAGCCTATCTGCCTGGGCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGTTGTTCATCTGGCTCGGCCTGCAGGTGGCACTCTATTTGCTGCCCTGCATGCAAGGTAAGGGATCTgtcgcaacataggaaggatatgcggtgaaatgatcctcg #### Tmem179b_ID2369_4 --> 1 - 0 Original Alignment cTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAG-TTTTACTCCAACCTACATACTGCTGAA ccatccttcctacgcctgtcaccacctgtggtggtacttttgtcttgtagcTGCTCTGAAGCCCAGAAGACCGCATGGACACCTTCAGGAACTGCTGTGCAGCTTTTACTCCAACCTACATACTGCTGAAgtaagacacaggtatacaccaagattaagcaacgagcttaagtgtgcaca Alignment from CESAR cTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAG-TTTTACTCCAACCTACATACTGCTGAA ccatccttcctacgcctgtcaccacctgtggtggtacttttgtcttgtagcTGCTCTGAAGCCCAGAAGACCGCATGGACACCTTCAGGAACTGCTGTGCAGCTTTTACTCCAACCTACATACTGCTGAAgtaagacacaggtatacaccaagattaagcaacgagcttaagtgtgcaca Alignment from Spaln_aa2Genome CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAG-TTTTACTCCAACCTACATACTGCTGAA ccatccttcctacgcctgtcaccacctgtggtggtacttttgtcttgtagCTGCTCTGAAGCCCAGAAGACCGCATGGACACCTTCAGGAACTGCTGTGCAGcTTTTACTCCAACCTACATACTGCTGAAgtaagacacaggtatacaccaagattaagcaacgagcttaagtgtgcaca Alignment from Spaln_nt2Genome CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAGT-TTTACTCCAACCTACATACTGCTGAA ccatccttcctacgcctgtcaccacctgtggtggtacttttgtcttgtagCTGCTCTGAAGCCCAGAAGACCGCATGGACACCTTCAGGAACTGCTGTGCAGCTTTTACTCCAACCTACATACTGCTGAAgtaagacacaggtatacaccaagattaagcaacgagcttaagtgtgcaca Alignment from Pairagon CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAG-TTTTACTCCAACCTACATACTGCTGAA ccatccttcctacgcctgtcaccacctgtggtggtacttttgtcttgtagCTGCTCTGAAGCCCAGAAGACCGCATGGACACCTTCAGGAACTGCTGTGCAGCTTTTACTCCAACCTACATACTGCTGAAgtaagacacaggtatacaccaagattaagcaacgagcttaagtgtgcaca Alignment from Exonerate_protein2genome CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAG-TTTTACTCCAACCTACATACTGCTGAA ccatccttcctacgcctgtcaccacctgtggtggtacttttgtcttgtagCTGCTCTGAAGCCCAGAAGACCGCATGGACACCTTCAGGAACTGCTGTGCAGCTTTTACTCCAACCTACATACTGCTGAAgtaagacacaggtatacaccaagattaagcaacgagcttaagtgtgcaca Alignment from Exonerate_coding2genome CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTGCAG-TTTTACTCCAACCTACATACTGCTGAA ccatccttcctacgcctgtcaccacctgtggtggtacttttgtcttgtagCTGCTCTGAAGCCCAGAAGACCGCATGGACACCTTCAGGAACTGCTGTGCAGCTTTTACTCCAACCTACATACTGCTGAAgtaagacacaggtatacaccaagattaagcaacgagcttaagtgtgcaca Alignment from GeneWise CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTG-CAGTTTTACTCCAACCTACATACTGCTGAA ccatccttcctacgcctgtcaccacctgtggtggtacttttgtcttgtagCTGCTCTGAAGCCCAGAAGACCGCATGGACACCTTCAGGAACTGCTGTGCAGCTTTTACTCCAACCTACATACTGCTGAAgtaagacacaggtatacaccaagattaagcaacgagcttaagtgtgcaca #### Tmem179b_ID2370_3 --> 1 - 2 Original Alignment aGGTTCTATAGGGCTCCGAATTGCT-TTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTag cattttgaggtgaattccacacaggctgtgctgccctgccctctccccagaGGTTCTATAGGGCTCCGGATTGCTCTTGGCCATCTCGGCTACAGCGATCTTCCTAATCTTAGTATCAGCCTGCATACTTCGATTCGGTACCAATTCTTTCTGCAATTCCATCATCTCTTTGAATCTTACAATTaggtaagtggtgagggacagaaccctaacgcagctgtgattctgtggaggat Alignment from CESAR aGGTTCTATAGGGCTCCGAATTGCT-TTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTag cattttgaggtgaattccacacaggctgtgctgccctgccctctccccagaGGTTCTATAGGGCTCCGGATTGCTCTTGGCCATCTCGGCTACAGCGATCTTCCTAATCTTAGTATCAGCCTGCATACTTCGATTCGGTACCAATTCTTTCTGCAATTCCATCATCTCTTTGAATCTTACAATTaggtaagtggtgagggacagaaccctaacgcagctgtgattctgtggaggat Alignment from Spaln_aa2Genome AGGTTCTATAGGGCTCCGAATTGCT-TTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG cattttgaggtgaattccacacaggctgtgctgccctgccctctccccagAGGTTCTATAGGGCTCCGGATTGCTcTTGGCCATCTCGGCTACAGCGATCTTCCTAATCTTAGTATCAGCCTGCATACTTCGATTCGGTACCAATTCTTTCTGCAATTCCATCATCTCTTTGAATCTTACAATTAGgtaagtggtgagggacagaaccctaacgcagctgtgattctgtggaggat Alignment from Spaln_nt2Genome AGGTTCTATAGGGCTCCGAATTGCT-TTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG cattttgaggtgaattccacacaggctgtgctgccctgccctctccccagAGGTTCTATAGGGCTCCGGATTGCTCTTGGCCATCTCGGCTACAGCGATCTTCCTAATCTTAGTATCAGCCTGCATACTTCGATTCGGTACCAATTCTTTCTGCAATTCCATCATCTCTTTGAATCTTACAATTAGgtaagtggtgagggacagaaccctaacgcagctgtgattctgtggaggat Alignment from Pairagon AGGTTCTATAGGGCTCCGAATTGCT-TTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG cattttgaggtgaattccacacaggctgtgctgccctgccctctccccagAGGTTCTATAGGGCTCCGGATTGCTCTTGGCCATCTCGGCTACAGCGATCTTCCTAATCTTAGTATCAGCCTGCATACTTCGATTCGGTACCAATTCTTTCTGCAATTCCATCATCTCTTTGAATCTTACAATTAGgtaagtggtgagggacagaaccctaacgcagctgtgattctgtggaggat Alignment from Exonerate_protein2genome AGGTTCTATAGGGCTCCGAATTGCT-TTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG cattttgaggtgaattccacacaggctgtgctgccctgccctctccccagAGGTTCTATAGGGCTCCGGATTGCTCTTGGCCATCTCGGCTACAGCGATCTTCCTAATCTTAGTATCAGCCTGCATACTTCGATTCGGTACCAATTCTTTCTGCAATTCCATCATCTCTTTGAATCTTACAATTAGgtaagtggtgagggacagaaccctaacgcagctgtgattctgtggaggat Alignment from Exonerate_coding2genome AGGTTCTATAGGGCTCCGAATTGCT-TTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG cattttgaggtgaattccacacaggctgtgctgccctgccctctccccagAGGTTCTATAGGGCTCCGGATTGCTCTTGGCCATCTCGGCTACAGCGATCTTCCTAATCTTAGTATCAGCCTGCATACTTCGATTCGGTACCAATTCTTTCTGCAATTCCATCATCTCTTTGAATCTTACAATTAGgtaagtggtgagggacagaaccctaacgcagctgtgattctgtggaggat Alignment from GeneWise AGGTTCTATAGGGCTCCGAATTGCTTTG-GCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG cattttgaggtgaattccacacaggctgtgctgccctgccctctccccagAGGTTCTATAGGGCTCCGGATTGCTCTTGGCCATCTCGGCTACAGCGATCTTCCTAATCTTAGTATCAGCCTGCATACTTCGATTCGGTACCAATTCTTTCTGCAATTCCATCATCTCTTTGAATCTTACAATTAGgtaagtggtgagggacagaaccctaacgcagctgtgattctgtggaggat #### Tmem179b_ID2371_2 --> 0 - 2 Original Alignment GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCA-CTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACag ccccctttcacctcaacttcagaaagctctttccgttgctgccgccacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACCTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGCAGCTGCATA---GATTCCCACaggcaagtgcccatgagaaatactcgggaaagattatcaacataactcagaa Alignment from CESAR GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCA-CTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACag ccccctttcacctcaacttcagaaagctctttccgttgctgccgccacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACCTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGCAGCTGCATA---GATTCCCACaggcaagtgcccatgagaaatactcgggaaagattatcaacataactcagaa Alignment from Spaln_aa2Genome GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCA-CTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG ccccctttcacctcaacttcagaaagctctttccgttgctgccgccacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCAcCTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGCAGCTGCATA---GATTCCCACAGgcaagtgcccatgagaaatactcgggaaagattatcaacataactcagaa Alignment from Spaln_nt2Genome GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCAC-TCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG ccccctttcacctcaacttcagaaagctctttccgttgctgccgccacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACCTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGCAGCTGCAT---AGATTCCCACAGgcaagtgcccatgagaaatactcgggaaagattatcaacataactcagaa Alignment from Pairagon GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCA-CTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG ccccctttcacctcaacttcagaaagctctttccgttgctgccgccacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACCTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGCAGCTGCAT---AGATTCCCACAGgcaagtgcccatgagaaatactcgggaaagattatcaacataactcagaa Alignment from Exonerate_protein2genome GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCA-CTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG ccccctttcacctcaacttcagaaagctctttccgttgctgccgccacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACCTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGCAGCTGCATA---GATTCCCACAGgcaagtgcccatgagaaatactcgggaaagattatcaacataactcagaa Alignment from Exonerate_coding2genome GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCA-CTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG ccccctttcacctcaacttcagaaagctctttccgttgctgccgccacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACCTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGCAGCTGCATA---GATTCCCACAGgcaagtgcccatgagaaatactcgggaaagattatcaacataactcagaa Alignment from GeneWise GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCT-GCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAGA ccccctttcacctcaacttcagaaagctctttccgttgctgccgccacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACCTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGCAGCTGCATAGATTCCCACAGGCAAgtgcccatgagaaatactcgggaaagattatcaacataactcagaa #### Trmt112_ID1861_2 --> 0 - 0 Original Alignment GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAG-TGGGCGGCGCTTGTGCAGGCAGCGGACACC gacctggacctacctcactgaatgttttctaatggttctgctctccacagGCCACTGAAGTCTGCATCAACCCTGTGGAATTTAACCCAGAGTTAGTGGCACGTATGATCCCCAAAGTGGAGCTGGGCAGCGCTTGTTCGGGCTGCAGACACTgtaagagccttgtccttcctgtcgtatcttaggggtatgctcagattctg Alignment from CESAR GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAG-TGGGCGGCGCTTGTGCAGGCAGCGGACACC gacctggacctacctcactgaatgttttctaatggttctgctctccacagGCCACTGAAGTCTGCATCAACCCTGTGGAATTTAACCCAGAGTTAGTGGCACGTATGATCCCCAAAGTGGAGCTGGGCAGCGCTTGTTCGGGCTGCAGACACTgtaagagccttgtccttcctgtcgtatcttaggggtatgctcagattctg Alignment from Spaln_aa2Genome GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAG-TGGGCGGCGCTTGTGCAGGCAGCGGACACC gacctggacctacctcactgaatgttttctaatggttctgctctccacagGCCACTGAAGTCTGCATCAACCCTGTGGAATTTAACCCAGAGTTAGTGGCACGTATGATCCCCAAAGTGGAGcTGGGCAGCGCTTGTTCGGGCTGCAGACACTgtaagagccttgtccttcctgtcgtatcttaggggtatgctcagattctg Alignment from Spaln_nt2Genome GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAG-TGGGCGGCGCTTGTGCAGGCAGCGGACACC gacctggacctacctcactgaatgttttctaatggttctgctctccacagGCCACTGAAGTCTGCATCAACCCTGTGGAATTTAACCCAGAGTTAGTGGCACGTATGATCCCCAAAGTGGAGCTGGGCAGCGCTTGTTCGGGCTGCAGACACTgtaagagccttgtccttcctgtcgtatcttaggggtatgctcagattctg Alignment from Pairagon GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAG-TGGGCGGCGCTTGTGCAGGCAGCGGACACC gacctggacctacctcactgaatgttttctaatggttctgctctccacagGCCACTGAAGTCTGCATCAACCCTGTGGAATTTAACCCAGAGTTAGTGGCACGTATGATCCCCAAAGTGGAGCTGGGCAGCGCTTGTTCGGGCTGCAGACACTgtaagagccttgtccttcctgtcgtatcttaggggtatgctcagattctg Alignment from Exonerate_protein2genome GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAG-TGGGCGGCGCTTGTGCAGGCAGCGGACACC gacctggacctacctcactgaatgttttctaatggttctgctctccacagGCCACTGAAGTCTGCATCAACCCTGTGGAATTTAACCCAGAGTTAGTGGCACGTATGATCCCCAAAGTGGAGCTGGGCAGCGCTTGTTCGGGCTGCAGACACTgtaagagccttgtccttcctgtcgtatcttaggggtatgctcagattctg Alignment from Exonerate_coding2genome GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAG-TGGGCGGCGCTTGTGCAGGCAGCGGACACC gacctggacctacctcactgaatgttttctaatggttctgctctccacagGCCACTGAAGTCTGCATCAACCCTGTGGAATTTAACCCAGAGTTAGTGGCACGTATGATCCCCAAAGTGGAGCTGGGCAGCGCTTGTTCGGGCTGCAGACACTgtaagagccttgtccttcctgtcgtatcttaggggtatgctcagattctg Alignment from GeneWise GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTG-GAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC gacctggacctacctcactgaatgttttctaatggttctgctctccacagGCCACTGAAGTCTGCATCAACCCTGTGGAATTTAACCCAGAGTTAGTGGCACGTATGATCCCCAAAGTGGAGCTGGGCAGCGCTTGTTCGGGCTGCAGACACTgtaagagccttgtccttcctgtcgtatcttaggggtatgctcagattctg #### Trpt1_ID1981_4 --> 0 - 1 Original Alignment GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGG---AAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCA-GGATTGCCTGGGGACCCTGGTGTCATCAGCg gagtgcatgaagggagcttctctgctgttctttccctctctctcccccagGTCCCTGAGTTAGAACTGACCCCCCTGGAGACACCACAAGCCCTGCCCTTGGCACTAGTCCATGGTACATTCTGGAAGAATCACTGGCCATCCATTTTACTAAAGGGTTTGTCACGCCAAGGAAGGACACGCATTCACCTGGCTTCACGGATTGCCA---GACCCTGGTGTTATCAGTggtgagtgcacattacctcatctctcttccctggtctccaccagggatcac Alignment from CESAR GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAG---CACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCA-GGATTGCCTGGGGACCCTGGTGTCATCAGCg gagtgcatgaagggagcttctctgctgttctttccctctctctcccccagGTCCCTGAGTTAGAACTGACCCCCCTGGAGACACCACAAGCCCTGCCCTTGGCACTAGTCCATGGTACATTCTGGAAGAATCACTGGCCATCCATTTTACTAAAGGGTTTGTCACGCCAAGGAAGGACACGCATTCACCTGGCTTCACGGATTGCCA---GACCCTGGTGTTATCAGTggtgagtgcacattacctcatctctcttccctggtctccaccagggatcac Alignment from Spaln_aa2Genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAG---CACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCA-GGATTGCCTGGGGACCCTGGTGTCATCAGCG gagtgcatgaagggagcttctctgctgttctttccctctctctcccccagGTCCCTGAGTTAGAACTGACCCCCCTGGAGACACCACAAGCCCTGCCCTTGGCACTAGTCCATGGTACATTCTGGAAGAATCACTGGCCATCCATTTTACTAAAGGGTTTGTCACGCCAAGGAAGGACACGCATTCACCTGGCTTCAcGGATTGCCA---GACCCTGGTGTTATCAGTGgtgagtgcacattacctcatctctcttccctggtctccaccagggatcac Alignment from Spaln_nt2Genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTG---GAAGCACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCA-GGATTGCCTGGGGACCCTGGTGTCATCAGCG gagtgcatgaagggagcttctctgctgttctttccctctctctcccccagGTCCCTGAGTTAGAACTGACCCCCCTGGAGACACCACAAGCCCTGCCCTTGGCACTAGTCCATGGTACATTCTGGAAGAATCACTGGCCATCCATTTTACTAAAGGGTTTGTCACGCCAAGGAAGGACACGCATTCACCTGGCTTCACGGATTGCC---AGACCCTGGTGTTATCAGTGgtgagtgcacattacctcatctctcttccctggtctccaccagggatcac Alignment from Pairagon GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAG---CACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCA-GGATTGCCTGGGGACCCTGGTGTCATCAGCG gagtgcatgaagggagcttctctgctgttctttccctctctctcccccagGTCCCTGAGTTAGAACTGACCCCCCTGGAGACACCACAAGCCCTGCCCTTGGCACTAGTCCATGGTACATTCTGGAAGAATCACTGGCCATCCATTTTACTAAAGGGTTTGTCACGCCAAGGAAGGACACGCATTCACCTGGCTTCACGGATTGCC---AGACCCTGGTGTTATCAGTGgtgagtgcacattacctcatctctcttccctggtctccaccagggatcac Alignment from Exonerate_protein2genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAG---CACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCA-GGATTGCCTGGGGACCCTGGTGTCATCAGCG gagtgcatgaagggagcttctctgctgttctttccctctctctcccccagGTCCCTGAGTTAGAACTGACCCCCCTGGAGACACCACAAGCCCTGCCCTTGGCACTAGTCCATGGTACATTCTGGAAGAATCACTGGCCATCCATTTTACTAAAGGGTTTGTCACGCCAAGGAAGGACACGCATTCACCTGGCTTCACGGATTGCCA---GACCCTGGTGTTATCAGTGgtgagtgcacattacctcatctctcttccctggtctccaccagggatcac Alignment from Exonerate_coding2genome GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAG---CACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCCTCA-GGATTGCCTGGGGACCCTGGTGTCATCAGCG gagtgcatgaagggagcttctctgctgttctttccctctctctcccccagGTCCCTGAGTTAGAACTGACCCCCCTGGAGACACCACAAGCCCTGCCCTTGGCACTAGTCCATGGTACATTCTGGAAGAATCACTGGCCATCCATTTTACTAAAGGGTTTGTCACGCCAAGGAAGGACACGCATTCACCTGGCTTCACGGATTGCCA---GACCCTGGTGTTATCAGTGgtgagtgcacattacctcatctctcttccctggtctccaccagggatcac Alignment from GeneWise GTCCCTGAGTTGGAACTGACGCCCCTGGAGACACCACAAGCCCTGCCCTTGACACTAGTCCATGGTACATTCTGGAAG---CACTGGCCATCTATTCTACTAAAGGGCTTGTCACGCCAAGGAAGGACACACATCCACTTGGCC-TCAGGATTGCCTGGGGACCCTGGTGTCATCAGCG gagtgcatgaagggagcttctctgctgttctttccctctctctcccccagGTCCCTGAGTTAGAACTGACCCCCCTGGAGACACCACAAGCCCTGCCCTTGGCACTAGTCCATGGTACATTCTGGAAGAATCACTGGCCATCCATTTTACTAAAGGGTTTGTCACGCCAAGGAAGGACACGCATTCACCTGGCTTCACGGATTGCCA---GACCCTGGTGTTATCAGTGgtgagtgcacattacctcatctctcttccctggtctccaccagggatcac #### Trpt1_ID1982_5 --> 2 - 1 Original Alignment gcATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGAT-GGACCCCTAGCCCTCACAg cccatagctatgcaggggaagagagagctctctttctggcatcttttcaggcATTCGACCAAATTGTGGAGTGACAGTGTTTATTGATCGGGCCGCTAGCCCTCACAggtaaggattgccccacagagctgaatcactcatgcctgtcatagaacgtg Alignment from CESAR gcATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGAT-GGACCCCTAGCCCTCACAg cccatagctatgcaggggaagagagagctctctttctggcatcttttcaggcATTCGACCAAATTGTGGAGTGACAGTGTTTATTGATCGGGCCGCTAGCCCTCACAggtaaggattgccccacagagctgaatcactcatgcctgtcatagaacgtg Alignment from Spaln_aa2Genome GCATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGAT-GGACCCCTAGCCCTCACAG cccatagctatgcaggggaagagagagctctctttctggcatcttttcagGCATTCGACCAAATTGTGGAGTGACAGTGTTTATTGATcGGGCCGCTAGCCCTCACAGgtaaggattgccccacagagctgaatcactcatgcctgtcatagaacgtg Alignment from Spaln_nt2Genome GCATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGAT-GGACCCCTAGCCCTCACAG cccatagctatgcaggggaagagagagctctctttctggcatcttttcagGCATTCGACCAAATTGTGGAGTGACAGTGTTTATTGATCGGGCCGCTAGCCCTCACAGgtaaggattgccccacagagctgaatcactcatgcctgtcatagaacgtg Alignment from Pairagon GCATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGAT-GGACCCCTAGCCCTCACAG cccatagctatgcaggggaagagagagctctctttctggcatcttttcagGCATTCGACCAAATTGTGGAGTGACAGTGTTTATTGATCGGGCCGCTAGCCCTCACAGgtaaggattgccccacagagctgaatcactcatgcctgtcatagaacgtg Alignment from Exonerate_protein2genome GCATTCGTCCAAATTGTGAGGTGGCGGTGTTCATCGAT-GGACCCCTAGCCCTCACAG cccatagctatgcaggggaagagagagctctctttctggcatcttttcagGCATTCGACCAAATTGTGGAGTGACAGTGTTTATTGATCGGGCCGCTAGCCCTCACAGgtaaggattgccccacagagctgaatcactcatgcctgtcatagaacgtg Alignment from Exonerate_coding2genome GCATTCGTCCAAATTGT cccatagctatgcaggggaagagagagctctctttctggcatcttttcaggcattcgaccaaattgtggagtgacagtgtttattgatcgggccgctagccctcacaggtaaggattgccccacagagctgaatcactcatGCCTGTCATAGAACGTG Alignment from GeneWise ---GTG cccatagctatgcaggggaagagagagctctctttctggcatcttttcaggcattcgaccaaattgtggagtgacagtgtttattgatcgggccgctagccctcacaggtaaggattgccccacagagctgaatcactcatgcctgtcatagAACGTG #### Ubxn1_ID2438_2 --> 1 - 2 Original Alignment gGAGAAGGCTCTGGCC-CTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATtg tttgtataaggtataaggaagggcattactgtcctgtcctgtcctcacaggGAGAAGGCTCTTGCCCCTCACAGGGAACCATGGCATCGAGGCTGCGATGGCTtggtgagcagacaatctgcacattcggtgggtaatggagccgatgcacaagg Alignment from CESAR gGAGAAGGCTCTGGCC-CTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATtg tttgtataaggtataaggaagggcattactgtcctgtcctgtcctcacaggGAGAAGGCTCTTGCCCCTCACAGGGAACCATGGCATCGAGGCTGCGATGGCTtggtgagcagacaatctgcacattcggtgggtaatggagccgatgcacaagg Alignment from Spaln_aa2Genome GGAACCAGGGCATCGAGGCTGCGATGGATTG tttgtataaggtataaggaagggcattactgtcctgtcctgtcctcacagggagaaggctcttgcccctcacagGGAACCATGGCATCGAGGCTGCGATGGCTTGgtgagcagacaatctgcacattcggtgggtaatggagccgatgcacaagg Alignment from Spaln_nt2Genome GGAGAAGGCTCTGGCCC-TCACAGGGAACCAGGGCATCGAGGCTGCGATGGATTG tttgtataaggtataaggaagggcattactgtcctgtcctgtcctcacagGGAGAAGGCTCTTGCCCCTCACAGGGAACCATGGCATCGAGGCTGCGATGGCTTGgtgagcagacaatctgcacattcggtgggtaatggagccgatgcacaagg Alignment from Pairagon GGAGAAGGCTC-TGGCCCTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATTG tttgtataaggtataaggaagggcattactgtcctgtcctgtcctcacagGGAGAAGGCTCTTGCCCCTCACAGGGAACCATGGCATCGAGGCTGCGATGGCTTGgtgagcagacaatctgcacattcggtgggtaatggagccgatgcacaagg Alignment from Exonerate_protein2genome GGAGAAGGCTCTGGCC-CTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATTG tttgtataaggtataaggaagggcattactgtcctgtcctgtcctcacagGGAGAAGGCTCTTGCCCCTCACAGGGAACCATGGCATCGAGGCTGCGATGGCTTGgtgagcagacaatctgcacattcggtgggtaatggagccgatgcacaagg Alignment from Exonerate_coding2genome GGAGAAGGCTCTGGCC-CTCACAGGGAACCAGGGCATCGAGGCTGCGATGGATTG tttgtataaggtataaggaagggcattactgtcctgtcctgtcctcacagGGAGAAGGCTCTTGCCCCTCACAGGGAACCATGGCATCGAGGCTGCGATGGCTTGgtgagcagacaatctgcacattcggtgggtaatggagccgatgcacaagg Alignment from GeneWise -----GGGAACCA tttgtataaggtataaggaagggcattactgtcctgtcctgtcctcacagggagaaggctcttgcccctcacagggaaccatggcatcgaggctgcgatggcttggtgagcagacaatctgcacattcggtgggtaatggagCCGATGCACAAGG #### Unc93b1_ID211_2 --> 0 - 1 Original Alignment TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTT-ACTTACGGCGTCTACCTGg tcttggagtttcgatggggagccaccaacatggacctctcctctccatagCTAGATGAACTTGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGCCACTACTACTGCCGTAAGCGTCTTGGGGTAGTTAAGAATGCATTGGCAGCCAGCACAGGTGTCACTCTGCACTTATGGCATCTTCCTGggtgggtacgacatagtaactctgcttgccctcttcctctacaacttcaaa Alignment from CESAR TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTT-ACTTACGGCGTCTACCTGg tcttggagtttcgatggggagccaccaacatggacctctcctctccatagCTAGATGAACTTGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGCCACTACTACTGCCGTAAGCGTCTTGGGGTAGTTAAGAATGCATTGGCAGCCAGCACAGGTGTCACTCTGCACTTATGGCATCTTCCTGggtgggtacgacatagtaactctgcttgccctcttcctctacaacttcaaa Alignment from Spaln_aa2Genome TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTT-ACTTACGGCGTCTACCTGG tcttggagtttcgatggggagccaccaacatggacctctcctctccatagCTAGATGAACTTGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGCCACTACTACTGCCGTAAGCGTCTTGGGGTAGTTAAGAATGCATTGGCAGCCAGCACAGGTGTCACTCTGcACTTATGGCATCTTCCTGGgtgggtacgacatagtaactctgcttgccctcttcctctacaacttcaaa Alignment from Spaln_nt2Genome TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTT-ACTTACGGCGTCTACCTGG tcttggagtttcgatggggagccaccaacatggacctctcctctccatagCTAGATGAACTTGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGCCACTACTACTGCCGTAAGCGTCTTGGGGTAGTTAAGAATGCATTGGCAGCCAGCACAGGTGTCACTCTGCACTTATGGCATCTTCCTGGgtgggtacgacatagtaactctgcttgccctcttcctctacaacttcaaa Alignment from Pairagon TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCT-TACTTACGGCGTCTACCTGG tcttggagtttcgatggggagccaccaacatggacctctcctctccatagCTAGATGAACTTGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGCCACTACTACTGCCGTAAGCGTCTTGGGGTAGTTAAGAATGCATTGGCAGCCAGCACAGGTGTCACTCTGCACTTATGGCATCTTCCTGGgtgggtacgacatagtaactctgcttgccctcttcctctacaacttcaaa Alignment from Exonerate_protein2genome TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTT-ACTTACGGCGTCTACCTGG tcttggagtttcgatggggagccaccaacatggacctctcctctccatagCTAGATGAACTTGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGCCACTACTACTGCCGTAAGCGTCTTGGGGTAGTTAAGAATGCATTGGCAGCCAGCACAGGTGTCACTCTGCACTTATGGCATCTTCCTGGgtgggtacgacatagtaactctgcttgccctcttcctctacaacttcaaa Alignment from Exonerate_coding2genome TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACCCTT-ACTTACGGCGTCTACCTGG tcttggagtttcgatggggagccaccaacatggacctctcctctccatagCTAGATGAACTTGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGCCACTACTACTGCCGTAAGCGTCTTGGGGTAGTTAAGAATGCATTGGCAGCCAGCACAGGTGTCACTCTGCACTTATGGCATCTTCCTGGgtgggtacgacatagtaactctgcttgccctcttcctctacaacttcaaa Alignment from GeneWise TTGGACGAACTCGTGGGTGCGTACCCCAACTACAATGAGGAGGAGGAAGAGCGCCGCTACTACCGCCGCAAGCGCCTCGGAGTGGTCAAGAACGTGCTGGCGGCCAGCACGGGTGTCACC-CTTACTTACGGCGTCTACCTGG tcttggagtttcgatggggagccaccaacatggacctctcctctccatagCTAGATGAACTTGTGGGTGCATACCCCAACTACAATGAGGAGGAGGAAGAGCGCCACTACTACTGCCGTAAGCGTCTTGGGGTAGTTAAGAATGCATTGGCAGCCAGCACAGGTGTCACTCTGCACTTATGGCATCTTCCTGGgtgggtacgacatagtaactctgcttgccctcttcctctacaacttcaaa #### Unc93b1_ID215_6 --> 0 - 1 Original Alignment TTGAGCTTCGCG-TGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCg tgctgtgaaagtatggtgcaggctccaaagcctctcattcactattcaagTTGAGCTTCACACTGTGCTCAGCTGCCGATGATTTACTTCCTCAACAACTATCTGTATGACTTGAACCATACACTCATCAATGTGCAGAGATGTggtaagtctgtggaacctagaagcttggccttcttttcttacacaattaat Alignment from CESAR TTGAGCTTCGCG-TGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCg tgctgtgaaagtatggtgcaggctccaaagcctctcattcactattcaagTTGAGCTTCACACTGTGCTCAGCTGCCGATGATTTACTTCCTCAACAACTATCTGTATGACTTGAACCATACACTCATCAATGTGCAGAGATGTggtaagtctgtggaacctagaagcttggccttcttttcttacacaattaat Alignment from Spaln_aa2Genome GCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG tgctgtgaaagtatggtgcaggctccaaagcctctcattcactattcaagttgagCTTCACACTGTGCTCAGCTGCCGATGATTTACTTCCTCAACAACTATCTGTATGACTTGAACCATACACTCATCAATGTGCAGAGATGTGgtaagtctgtggaacctagaagcttggccttcttttcttacacaattaat Alignment from Spaln_nt2Genome TTGAGCTTCGCG-TGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG tgctgtgaaagtatggtgcaggctccaaagcctctcattcactattcaagTTGAGCTTCACACTGTGCTCAGCTGCCGATGATTTACTTCCTCAACAACTATCTGTATGACTTGAACCATACACTCATCAATGTGCAGAGATGTGgtaagtctgtggaacctagaagcttggccttcttttcttacacaattaat Alignment from Pairagon TTGAGCTTCGCG-TGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG tgctgtgaaagtatggtgcaggctccaaagcctctcattcactattcaagTTGAGCTTCACACTGTGCTCAGCTGCCGATGATTTACTTCCTCAACAACTATCTGTATGACTTGAACCATACACTCATCAATGTGCAGAGATGTGgtaagtctgtggaacctagaagcttggccttcttttcttacacaattaat Alignment from Exonerate_protein2genome TTGAGCTTCGCG-TGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG tgctgtgaaagtatggtgcaggctccaaagcctctcattcactattcaagTTGAGCTTCACACTGTGCTCAGCTGCCGATGATTTACTTCCTCAACAACTATCTGTATGACTTGAACCATACACTCATCAATGTGCAGAGATGTGgtaagtctgtggaacctagaagcttggccttcttttcttacacaattaat Alignment from Exonerate_coding2genome TTGAGCTTCGCG-TGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG tgctgtgaaagtatggtgcaggctccaaagcctctcattcactattcaagTTGAGCTTCACACTGTGCTCAGCTGCCGATGATTTACTTCCTCAACAACTATCTGTATGACTTGAACCATACACTCATCAATGTGCAGAGATGTGgtaagtctgtggaacctagaagcttggccttcttttcttacacaattaat Alignment from GeneWise GCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG tgctgtgaaagtatggtgcaggctccaaagcctctcattcactattcaagttgagCTTCACACTGTGCTCAGCTGCCGATGATTTACTTCCTCAACAACTATCTGTATGACTTGAACCATACACTCATCAATGTGCAGAGATGTGgtaagtctgtggaacctagaagcttggccttcttttcttacacaattaat #### Vegfb_ID1955_5 --> 1 - 2 Original Alignment aCCAAAAAAAAAGGAGAGTGCT-GTGAAGCCAGACag tgcacaagtgtgagaggtttgggtctgtcacagggaaacttgtattgtagaCCTAAAAAGAAGGAGACAGCTCGTGAGGCCAGACcggtgagtgttttccaactgtcaatgctggttagtgagagagagcccatttg Alignment from CESAR aCCAAAAAAAAAGGAGAGTGCT-GTGAAGCCAGACag tgcacaagtgtgagaggtttgggtctgtcacagggaaacttgtattgtagaCCTAAAAAGAAGGAGACAGCTCGTGAGGCCAGACcggtgagtgttttccaactgtcaatgctggttagtgagagagagcccatttg Alignment from Spaln_aa2Genome ACCAAAAAAAAAGGAGAGTGCT-GTGAAGCCAGACAG tgcacaagtgtgagaggtttgggtctgtcacagggaaacttgtattgtagACCTAAAAAGAAGGAGACAGCTcGTGAGGCCAGACCGgtgagtgttttccaactgtcaatgctggttagtgagagagagcccatttg Alignment from Spaln_nt2Genome ACCAAAAAAAAAGGAGAGTGCT-GTGAAGCCAGACAG tgcacaagtgtgagaggtttgggtctgtcacagggaaacttgtattgtagACCTAAAAAGAAGGAGACAGCTCGTGAGGCCAGACCGgtgagtgttttccaactgtcaatgctggttagtgagagagagcccatttg Alignment from Pairagon ACCAAAAAAAAAGGAGAGTGCT-GTGAAGCCAGACAG tgcacaagtgtgagaggtttgggtctgtcacagggaaacttgtattgtagACCTAAAAAGAAGGAGACAGCTCGTGAGGCCAGACCGgtgagtgttttccaactgtcaatgctggttagtgagagagagcccatttg Alignment from Exonerate_protein2genome ACCAAAAAAAAAGGAGAGTGCT-GTGAAGCCAGACAG tgcacaagtgtgagaggtttgggtctgtcacagggaaacttgtattgtagACCTAAAAAGAAGGAGACAGCTCGTGAGGCCAGACCGgtgagtgttttccaactgtcaatgctggttagtgagagagagcccatttg Alignment from Exonerate_coding2genome tgcacaagtgtgagaggtttgggtctgtcacagggaaacttgtattgtagacctaaaaagaaggagacagctcgtgaggccagaccggtgagtgttttccaactgtcaatgctggttagtgagagagagcccatttg Alignment from GeneWise tgcacaagtgtgagaggtttgggtctgtcacagggaaacttgtattgtagacctaaaaagaaggagacagctcgtgaggccagaccggtgagtgttttccaactgtcaatgctggttagtgagagagagcccatttg #### Vldlr_ID5810_9 --> 2 - 1 Original Alignment atATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGT-AGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAg gatctaatgggatataggaagaactgagcctgattttcctttgtatccagatATCGATGAATGCCAAAACCCAGGGATCTGCAGTCAGATCTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTCAGTCATGGCTATCAAATGGAACTGGCCACTGGCGTGTGCAAGGCAATAggtaggtagttaacctagtgatgctattaagctctgagtgtaggctgaaaa Alignment from CESAR atATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGT-AGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAg gatctaatgggatataggaagaactgagcctgattttcctttgtatccagatATCGATGAATGCCAAAACCCAGGGATCTGCAGTCAGATCTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTCAGTCATGGCTATCAAATGGAACTGGCCACTGGCGTGTGCAAGGCAATAggtaggtagttaacctagtgatgctattaagctctgagtgtaggctgaaaa Alignment from Spaln_aa2Genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAG gatctaatgggatataggaagaactgagcctgattttcctttgtatccagATATCGATGAATGCCAAAACCCAGGGATCTGCAGTCAGATCTGTATCAACTTAAAAGgcggttacaagtgtgaatgtcagtcatggctatcaaatggaactggccactggcgtgtgcaaggcaataggtaggtagttaacctagtgatgctattaagctctgagtgtaggctgaaaa Alignment from Spaln_nt2Genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAG gatctaatgggatataggaagaactgagcctgattttcctttgtatccagATATCGATGAATGCCAAAACCCAGGGATCTGCAGTCAGATCTGTATCAACTTAAAAGgcggttacaagtgtgaatgtcagtcatggctatcaaatggaactggccactggcgtgtgcaaggcaataggtaggtagttaacctagtgatgctattaagctctgagtgtaggctgaaaa Alignment from Pairagon ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGT-AGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG gatctaatgggatataggaagaactgagcctgattttcctttgtatccagATATCGATGAATGCCAAAACCCAGGGATCTGCAGTCAGATCTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTCAGTCATGGCTATCAAATGGAACTGGCCACTGGCGTGTGCAAGGCAATAGgtaggtagttaacctagtgatgctattaagctctgagtgtaggctgaaaa Alignment from Exonerate_protein2genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGT-AGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG gatctaatgggatataggaagaactgagcctgattttcctttgtatccagATATCGATGAATGCCAAAACCCAGGGATCTGCAGTCAGATCTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTCAGTCATGGCTATCAAATGGAACTGGCCACTGGCGTGTGCAAGGCAATAGgtaggtagttaacctagtgatgctattaagctctgagtgtaggctgaaaa Alignment from Exonerate_coding2genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGT-AGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG gatctaatgggatataggaagaactgagcctgattttcctttgtatccagATATCGATGAATGCCAAAACCCAGGGATCTGCAGTCAGATCTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTCAGTCATGGCTATCAAATGGAACTGGCCACTGGCGTGTGCAAGGCAATAGgtaggtagttaacctagtgatgctattaagctctgagtgtaggctgaaaa Alignment from GeneWise ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGT-AGTCGTGGCTATCAAATGGATCTTGCCACTGGCGTGTGCAAGGCAGTAG gatctaatgggatataggaagaactgagcctgattttcctttgtatccagATATCGATGAATGCCAAAACCCAGGGATCTGCAGTCAGATCTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTCAGTCATGGCTATCAAATGGAACTGGCCACTGGCGTGTGCAAGGCAATAGgtaggtagttaacctagtgatgctattaagctctgagtgtaggctgaaaa #### Vldlr_ID5811_10 --> 2 - 2 Original Alignment gcAAAGAGCCGAGTCTGATCTTCACTAATCGAAGA-GACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCag cagaatttgcccacaagcaaaaacaaatgacactcaccttaaccacacaggcAAAGAGCCAAGTCTGATCTTTACTAATCGAAGACGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATATATCCAACTTGTAGAGCAACTGAGGAACACAGTGGCTCTTGATGCAGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTTaggtaagttccatctgcatccctaatgtctaggaagcatgttaaacaatttg Alignment from CESAR gcAAAGAGCCGAGTCTGATCTTCACTAATCGAAGA-GACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCag cagaatttgcccacaagcaaaaacaaatgacactcaccttaaccacacaggcAAAGAGCCAAGTCTGATCTTTACTAATCGAAGACGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATATATCCAACTTGTAGAGCAACTGAGGAACACAGTGGCTCTTGATGCAGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTTaggtaagttccatctgcatccctaatgtctaggaagcatgttaaacaatttg Alignment from Spaln_aa2Genome cagaatttgcccacaagcaaaaacaaatgacactcaccttaaccacacaggcaaagagccaagtctgatctttactaatcgaagacgacatcaggaagattggcctagagagaaaggaatatatccaacttgtagagcaactgaggaacacagtggctcttgatgcagacattgcagctcagaagctgttttgggctgatctcagccagaaggccatctttaggtaagttccatctgcatccctaatgtctaggaagcatgttaaacaatttg Alignment from Spaln_nt2Genome cagaatttgcccacaagcaaaaacaaatgacactcaccttaaccacacaggcaaagagccaagtctgatctttactaatcgaagacgacatcaggaagattggcctagagagaaaggaatatatccaacttgtagagcaactgaggaacacagtggctcttgatgcagacattgcagctcagaagctgttttgggctgatctcagccagaaggccatctttaggtaagttccatctgcatccctaatgtctaggaagcatgttaaacaatttg Alignment from Pairagon GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGA-GACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG cagaatttgcccacaagcaaaaacaaatgacactcaccttaaccacacagGCAAAGAGCCAAGTCTGATCTTTACTAATCGAAGACGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATATATCCAACTTGTAGAGCAACTGAGGAACACAGTGGCTCTTGATGCAGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTTAGgtaagttccatctgcatccctaatgtctaggaagcatgttaaacaatttg Alignment from Exonerate_protein2genome GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGA-GACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG cagaatttgcccacaagcaaaaacaaatgacactcaccttaaccacacagGCAAAGAGCCAAGTCTGATCTTTACTAATCGAAGACGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATATATCCAACTTGTAGAGCAACTGAGGAACACAGTGGCTCTTGATGCAGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTTAGgtaagttccatctgcatccctaatgtctaggaagcatgttaaacaatttg Alignment from Exonerate_coding2genome GCAAAGAGCCGAGTCTGATCTTCACTAATCGAAGA-GACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG cagaatttgcccacaagcaaaaacaaatgacactcaccttaaccacacagGCAAAGAGCCAAGTCTGATCTTTACTAATCGAAGACGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATATATCCAACTTGTAGAGCAACTGAGGAACACAGTGGCTCTTGATGCAGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTTAGgtaagttccatctgcatccctaatgtctaggaagcatgttaaacaatttg Alignment from GeneWise GCAAAGAGCCGAGTCTGATCTTCACTAATCGA-AGAGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATACATCCAACTTGTAGAGCAACTAAGGAACACGGTGGCTCTCGATGCGGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTCAG cagaatttgcccacaagcaaaaacaaatgacactcaccttaaccacacagGCAAAGAGCCAAGTCTGATCTTTACTAATCGAAGACGACATCAGGAAGATTGGCCTAGAGAGAAAGGAATATATCCAACTTGTAGAGCAACTGAGGAACACAGTGGCTCTTGATGCAGACATTGCAGCTCAGAAGCTGTTTTGGGCTGATCTCAGCCAGAAGGCCATCTTTAGgtaagttccatctgcatccctaatgtctaggaagcatgttaaacaatttg #### Vps13a_ID4058_65 --> 2 - 0 Original Alignment gtGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATG-AATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT catcagtgatgactgggccattgtctgaagccgcagttcctctcttctaggtGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGGAGAGAAGCAATGCAATAAGCAGCCTGCTGGACTACGAGAAGGCATCACTCGAGGGGGAAAAGGTCTGGTCTCTgtaacgttcccctgggtttgggaccgcagcagcagaatcgttttgagcta Alignment from CESAR gtGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATG-AATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT catcagtgatgactgggccattgtctgaagccgcagttcctctcttctaggtGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGGAGAGAAGCAATGCAATAAGCAGCCTGCTGGACTACGAGAAGGCATCACTCGAGGGGGAAAAGGTCTGGTCTCTgtaacgttcccctgggtttgggaccgcagcagcagaatcgttttgagcta Alignment from Spaln_aa2Genome GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATG-AATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT catcagtgatgactgggccattgtctgaagccgcagttcctctcttctagGTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGGAGAGAAGCAATGcAATAAGCAGCCTGCTGGACTACGAGAAGGCATCACTCGAGGGGGAAAAGGTCTGGTCTCTgtaacgttcccctgggtttgggaccgcagcagcagaatcgttttgagcta Alignment from Spaln_nt2Genome GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATG-AATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT catcagtgatgactgggccattgtctgaagccgcagttcctctcttctagGTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGGAGAGAAGCAATGCAATAAGCAGCCTGCTGGACTACGAGAAGGCATCACTCGAGGGGGAAAAGGTCTGGTCTCTgtaacgttcccctgggtttgggaccgcagcagcagaatcgttttgagcta Alignment from Pairagon GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATG-AATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT catcagtgatgactgggccattgtctgaagccgcagttcctctcttctagGTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGGAGAGAAGCAATGCAATAAGCAGCCTGCTGGACTACGAGAAGGCATCACTCGAGGGGGAAAAGGTCTGGTCTCTgtaacgttcccctgggtttgggaccgcagcagcagaatcgttttgagcta Alignment from Exonerate_protein2genome GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATG-AATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT catcagtgatgactgggccattgtctgaagccgcagttcctctcttctagGTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGGAGAGAAGCAATGCAATAAGCAGCCTGCTGGACTACGAGAAGGCATCACTCGAGGGGGAAAAGGTCTGGTCTCTgtaacgttcccctgggtttgggaccgcagcagcagaatcgttttgagcta Alignment from Exonerate_coding2genome GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCAATG-AATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT catcagtgatgactgggccattgtctgaagccgcagttcctctcttctagGTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGGAGAGAAGCAATGCAATAAGCAGCCTGCTGGACTACGAGAAGGCATCACTCGAGGGGGAAAAGGTCTGGTCTCTgtaacgttcccctgggtttgggaccgcagcagcagaatcgttttgagcta Alignment from GeneWise GTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCGGCCATGACCATGGATGAAGACTACCAGCAGAAGAGGAGAGAAGCA-ATGAATAAGCAGCCTGCTGGCCTTCGAGAGGGCATCACTCGAGGAGGAAAAGGCCTTGTCTCT catcagtgatgactgggccattgtctgaagccgcagttcctctcttctagGTGGGCTAGCTGGTGCTGCCTCCAAAATCACCAGTGCTATGGCTAAAGGAGTAGCAGCCATGACCATGGATGAAGACTACCAGCAGAAAAGGAGAGAAGCAATGCAATAAGCAGCCTGCTGGACTACGAGAAGGCATCACTCGAGGGGGAAAAGGTCTGGTCTCTgtaacgttcccctgggtttgggaccgcagcagcagaatcgttttgagcta #### Vps13a_ID4059_64 --> 0 - 1 Original Alignment GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCG-CTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTg cacagtgctatcacaccaggtctttactcagccccactgtcccttgctagGGGGCTATCCAAGGTCCTGAAGAATTTGTGGCGGGAATGGCGCTTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTggtaggaagcaatagaactagcgacactgatcacatcagtgatgactgggc Alignment from CESAR GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTA-GGATTGAAAGCACTAGTTGGTGGAGCCGTTg cacagtgctatcacaccaggtctttactcagccccactgtcccttgctagGGGGCTATCCAAGGTCCTGAAGAATTTGTGGCGGGAATGGCGCTTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTggtaggaagcaatagaactagcgacactgatcacatcagtgatgactgggc Alignment from Spaln_aa2Genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTA-GGATTGAAAGCACTAGTTGGTGGAGCCGTTG cacagtgctatcacaccaggtctttactcagccccactgtcccttgctagGGGGCTATCCAAGGTCCTGAAGAATTTGTGGCGGGAATGGCGCTTaGGATTGAAAGCACTAGTTGGTGGAGCCGTTGgtaggaagcaatagaactagcgacactgatcacatcagtgatgactgggc Alignment from Spaln_nt2Genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGC-TAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG cacagtgctatcacaccaggtctttactcagccccactgtcccttgctagGGGGCTATCCAAGGTCCTGAAGAATTTGTGGCGGGAATGGCGCTTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTGgtaggaagcaatagaactagcgacactgatcacatcagtgatgactgggc Alignment from Pairagon GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGC-TAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG cacagtgctatcacaccaggtctttactcagccccactgtcccttgctagGGGGCTATCCAAGGTCCTGAAGAATTTGTGGCGGGAATGGCGCTTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTGgtaggaagcaatagaactagcgacactgatcacatcagtgatgactgggc Alignment from Exonerate_protein2genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCG-CTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG cacagtgctatcacaccaggtctttactcagccccactgtcccttgctagGGGGCTATCCAAGGTCCTGAAGAATTTGTGGCGGGAATGGCGCTTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTGgtaggaagcaatagaactagcgacactgatcacatcagtgatgactgggc Alignment from Exonerate_coding2genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCG-CTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG cacagtgctatcacaccaggtctttactcagccccactgtcccttgctagGGGGCTATCCAAGGTCCTGAAGAATTTGTGGCGGGAATGGCGCTTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTGgtaggaagcaatagaactagcgacactgatcacatcagtgatgactgggc Alignment from GeneWise GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATG-GCGCTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTG cacagtgctatcacaccaggtctttactcagccccactgtcccttgctagGGGGCTATCCAAGGTCCTGAAGAATTTGTGGCGGGAATGGCGCTTAGGATTGAAAGCACTAGTTGGTGGAGCCGTTGgtaggaagcaatagaactagcgacactgatcacatcagtgatgactgggc #### Vps13a_ID4074_49 --> 0 - 0 Original Alignment GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGCAAAGGT-CTGAAAATGGAATACCAA taaaaatactttaagcattaattataaggtgacttttacttccattccagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAATTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGTAAAGGTCCTGAAAATGGAATACCAAgtgaggttcttctgtgcctaaagaaacttccatttacagtatagctacca Alignment from CESAR GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGCAAAGGT-CTGAAAATGGAATACCAA taaaaatactttaagcattaattataaggtgacttttacttccattccagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAATTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGTAAAGGTCCTGAAAATGGAATACCAAgtgaggttcttctgtgcctaaagaaacttccatttacagtatagctacca Alignment from Spaln_aa2Genome GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGCAAAGGT-CTGAAAATGGAATACCAA taaaaatactttaagcattaattataaggtgacttttacttccattccagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAATTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGTAAAGGTcCTGAAAATGGAATACCAAgtgaggttcttctgtgcctaaagaaacttccatttacagtatagctacca Alignment from Spaln_nt2Genome GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGCAAAGGT-CTGAAAATGGAATACCAA taaaaatactttaagcattaattataaggtgacttttacttccattccagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAATTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGTAAAGGTCCTGAAAATGGAATACCAAgtgaggttcttctgtgcctaaagaaacttccatttacagtatagctacca Alignment from Pairagon GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGCAAAGGT-CTGAAAATGGAATACCAA taaaaatactttaagcattaattataaggtgacttttacttccattccagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAATTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGTAAAGGTCCTGAAAATGGAATACCAAgtgaggttcttctgtgcctaaagaaacttccatttacagtatagctacca Alignment from Exonerate_protein2genome GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGCAAAGGT-CTGAAAATGGAATACCAA taaaaatactttaagcattaattataaggtgacttttacttccattccagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAATTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGTAAAGGTCCTGAAAATGGAATACCAAgtgaggttcttctgtgcctaaagaaacttccatttacagtatagctacca Alignment from Exonerate_coding2genome GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGCAAAGGT-CTGAAAATGGAATACCAA taaaaatactttaagcattaattataaggtgacttttacttccattccagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAATTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGTAAAGGTCCTGAAAATGGAATACCAAgtgaggttcttctgtgcctaaagaaacttccatttacagtatagctacca Alignment from GeneWise GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGCAAAGGT-CTGAAAATGGAATACCAA taaaaatactttaagcattaattataaggtgacttttacttccattccagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAATTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGTAAAGGTCCTGAAAATGGAATACCAAgtgaggttcttctgtgcctaaagaaacttccatttacagtatagctacca #### Vps13a_ID4093_30 --> 2 - 1 Original Alignment ctTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAA-AACATTTCTGAAATTAAAATTGAAg gtggtctgtcaataagtttccccatgtttatttattatgttactctttagctTTAAAGCTACCCACAAATGAAGATATTATTACTTTGCAGCTTTTGGCAGAACTATCGTGTCTACAGATTCTCATCCAGGATCAGAAACAGCAACGTTTCTGAAATTAAAATTGAAggtgagtacatctaataaaatgtatttagaattgactaaatgtaaaaggca Alignment from CESAR ctTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAA-AACATTTCTGAAATTAAAATTGAAg gtggtctgtcaataagtttccccatgtttatttattatgttactctttagctTTAAAGCTACCCACAAATGAAGATATTATTACTTTGCAGCTTTTGGCAGAACTATCGTGTCTACAGATTCTCATCCAGGATCAGAAACAGCAACGTTTCTGAAATTAAAATTGAAggtgagtacatctaataaaatgtatttagaattgactaaatgtaaaaggca Alignment from Spaln_aa2Genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAA-AACATTTCTGAAATTAAAATTGAAG gtggtctgtcaataagtttccccatgtttatttattatgttactctttagCTTTAAAGCTACCCACAAATGAAGATATTATTACTTTGCAGCTTTTGGCAGAACTATCGTGTCTACAGATTCTCATCCAGGATCAGAAACAGcAACGTTTCTGAAATTAAAATTGAAGgtgagtacatctaataaaatgtatttagaattgactaaatgtaaaaggca Alignment from Spaln_nt2Genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAA-AACATTTCTGAAATTAAAATTGAAG gtggtctgtcaataagtttccccatgtttatttattatgttactctttagCTTTAAAGCTACCCACAAATGAAGATATTATTACTTTGCAGCTTTTGGCAGAACTATCGTGTCTACAGATTCTCATCCAGGATCAGAAACAGCAACGTTTCTGAAATTAAAATTGAAGgtgagtacatctaataaaatgtatttagaattgactaaatgtaaaaggca Alignment from Pairagon CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAA-AACATTTCTGAAATTAAAATTGAAG gtggtctgtcaataagtttccccatgtttatttattatgttactctttagCTTTAAAGCTACCCACAAATGAAGATATTATTACTTTGCAGCTTTTGGCAGAACTATCGTGTCTACAGATTCTCATCCAGGATCAGAAACAGCAACGTTTCTGAAATTAAAATTGAAGgtgagtacatctaataaaatgtatttagaattgactaaatgtaaaaggca Alignment from Exonerate_protein2genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAA-AACATTTCTGAAATTAAAATTGAAG gtggtctgtcaataagtttccccatgtttatttattatgttactctttagCTTTAAAGCTACCCACAAATGAAGATATTATTACTTTGCAGCTTTTGGCAGAACTATCGTGTCTACAGATTCTCATCCAGGATCAGAAACAGCAACGTTTCTGAAATTAAAATTGAAGgtgagtacatctaataaaatgtatttagaattgactaaatgtaaaaggca Alignment from Exonerate_coding2genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAA-AACATTTCTGAAATTAAAATTGAAG gtggtctgtcaataagtttccccatgtttatttattatgttactctttagCTTTAAAGCTACCCACAAATGAAGATATTATTACTTTGCAGCTTTTGGCAGAACTATCGTGTCTACAGATTCTCATCCAGGATCAGAAACAGCAACGTTTCTGAAATTAAAATTGAAGgtgagtacatctaataaaatgtatttagaattgactaaatgtaaaaggca Alignment from GeneWise CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAAC- gtggtctgtcaataagtttccccatgtttatttattatgttactctttagCTTTAAAGCTACCCACAAATGAAGATATTATTACTTTGCAGCTTTTGGCAGAACTATCGTGTCTACAGATTCTCATCCAGGATCAGAAACAGCAACgtttctgaaattaaaattgaaggtgagtacatctaataaaatgtatttagaattgactaaatgtaaaaggca #### Vwce_ID2948_3 --> 2 - 1 Original Alignment ccCTCTGCTCCTTTGGCTGT-GGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAg gactcatctatccttgcaactaaagtcttaaatgtttctctctatcttagccCTCTGCTCCTTTGGCTGTCGGAAGTGGCATCTGCATCACTCCTAATGTTTGTTCATGCCAGGATGGAGAGCAAGGGGCCACGTGCCCAggtgagtgtggtgaaagagagcagaccatgatcaccaaaataatatgaaga Alignment from CESAR ccCTCTGCTCCTTTGGCTGT-GGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAg aactcatctatccttgcaactaaagtcttaaatgtttctctctatcttagccCTCTGCTCCTTTGGCTGTCGGAAGTGGCATCTGCATCACTCCTAATGTTTGTTCATGCCAGGATGGAGAGCAAGGGGCCACGTGCCCAggtgagtgtggtgaaagagagcagaccatgatcaccaaaataatatgaaga Alignment from Spaln_aa2Genome CCCTCTGCTCCTTTGGCTGT-GGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG gactcatctatccttgcaactaaagtcttaaatgtttctctctatcttagCCCTCTGCTCCTTTGGCTGTcGGAAGTGGCATCTGCATCACTCCTAATGTTTGTTCATGCCAGGATGGAGAGCAAGGGGCCACGTGCCCAGgtgagtgtggtgaaagagagcagaccatgatcaccaaaataatatgaaga Alignment from Spaln_nt2Genome CCCTCTGCTCCTTTGGCTGT-GGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG gactcatctatccttgcaactaaagtcttaaatgtttctctctatcttagCCCTCTGCTCCTTTGGCTGTCGGAAGTGGCATCTGCATCACTCCTAATGTTTGTTCATGCCAGGATGGAGAGCAAGGGGCCACGTGCCCAGgtgagtgtggtgaaagagagcagaccatgatcaccaaaataatatgaaga Alignment from Pairagon CCCTCTGCTCCTTTGGCTGT-GGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG gactcatctatccttgcaactaaagtcttaaatgtttctctctatcttagCCCTCTGCTCCTTTGGCTGTCGGAAGTGGCATCTGCATCACTCCTAATGTTTGTTCATGCCAGGATGGAGAGCAAGGGGCCACGTGCCCAGgtgagtgtggtgaaagagagcagaccatgatcaccaaaataatatgaaga Alignment from Exonerate_protein2genome CCCTCTGCTCCTTTGGCTGT-GGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG gactcatctatccttgcaactaaagtcttaaatgtttctctctatcttagCCCTCTGCTCCTTTGGCTGTCGGAAGTGGCATCTGCATCACTCCTAATGTTTGTTCATGCCAGGATGGAGAGCAAGGGGCCACGTGCCCAGgtgagtgtggtgaaagagagcagaccatgatcaccaaaataatatgaaga Alignment from Exonerate_coding2genome CCCTCTGCTCCTTTGGCTGT-GGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG gactcatctatccttgcaactaaagtcttaaatgtttctctctatcttagCCCTCTGCTCCTTTGGCTGTCGGAAGTGGCATCTGCATCACTCCTAATGTTTGTTCATGCCAGGATGGAGAGCAAGGGGCCACGTGCCCAGgtgagtgtggtgaaagagagcagaccatgatcaccaaaataatatgaaga Alignment from GeneWise CCCTCTGCTCCTTTGGCTGT-GGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG gactcatctatccttgcaactaaagtcttaaatgtttctctctatcttagCCCTCTGCTCCTTTGGCTGTCGGAAGTGGCATCTGCATCACTCCTAATGTTTGTTCATGCCAGGATGGAGAGCAAGGGGCCACGTGCCCAGgtgagtgtggtgaaagagagcagaccatgatcaccaaaataatatgaaga #### Vwce_ID2964_18 --> 2 - 0 Original Alignment acTGTAACTTCGAAGGG-AGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG ccaatgcacccagctgaatattggtcattcctcacttgccttcttcacagacTGTAACTTTGAAGGGCAGAAAGGTAGTGAATGGTCAGGTTTTCACCCTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtaagctggctagaggacctggggccacctgttgcataaaggaccctcat Alignment from CESAR acTGTAACTTCGAAGGG-AGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG ccaatgcacccagctgaatattggtcattcctcacttgccttcttcacagacTGTAACTTTGAAGGGCAGAAAGGTAGTGAATGGTCAGGTTTTCACCCTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtaagctggctagaggacctggggccacctgttgcataaaggaccctcat Alignment from Spaln_aa2Genome ACTGTAACTTCGAAGGG-AGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG ccaatgcacccagctgaatattggtcattcctcacttgccttcttcacagACTGTAACTTTGAAGGGcAGAAAGGTAGTGAATGGTCAGGTTTTCACCCTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtaagctggctagaggacctggggccacctgttgcataaaggaccctcat Alignment from Spaln_nt2Genome ACTGTAACTTCGAAGGG-AGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG ccaatgcacccagctgaatattggtcattcctcacttgccttcttcacagACTGTAACTTTGAAGGGCAGAAAGGTAGTGAATGGTCAGGTTTTCACCCTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtaagctggctagaggacctggggccacctgttgcataaaggaccctcat Alignment from Pairagon ACTGTAACTTCGAAGGG-AGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG ccaatgcacccagctgaatattggtcattcctcacttgccttcttcacagACTGTAACTTTGAAGGGCAGAAAGGTAGTGAATGGTCAGGTTTTCACCCTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtaagctggctagaggacctggggccacctgttgcataaaggaccctcat Alignment from Exonerate_protein2genome ACTGTAACTTCGAA-GGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG ccaatgcacccagctgaatattggtcattcctcacttgccttcttcacagACTGTAACTTTGAAGGGCAGAAAGGTAGTGAATGGTCAGGTTTTCACCCTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtaagctggctagaggacctggggccacctgttgcataaaggaccctcat Alignment from Exonerate_coding2genome ACTGTAACTTCGAA-GGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG ccaatgcacccagctgaatattggtcattcctcacttgccttcttcacagACTGTAACTTTGAAGGGCAGAAAGGTAGTGAATGGTCAGGTTTTCACCCTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtaagctggctagaggacctggggccacctgttgcataaaggaccctcat Alignment from GeneWise ttaagtccctaccctatacctaatttatgctttcttgttttgccattttag #### Wdr74_ID2319_9 --> 2 - 0 Original Alignment ggCGTCTACTGGGCTGTCTGAAGGGGCTT-GCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaacaccccccataccctgtgtcctataggtAGACTAGTGGGCTGTCTGAAGGGTCTTCGCAGGTAGTGTTCGTGGGCTGCAGTGCCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGGACAGAGTCTTGAGGATATACAGGATCCGCAATCCATGTGGTCTAGAGCATAAGgtacgtgcccaaactttgtgctagccgcactaacttacattttctggaac Alignment from CESAR ggCGTCTACTGGGCTGTCTGAAGGGGCTT-GCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaacaccccccataccctgtgtcctataggtAGACTAGTGGGCTGTCTGAAGGGTCTTCGCAGGTAGTGTTCGTGGGCTGCAGTGCCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGGACAGAGTCTTGAGGATATACAGGATCCGCAATCCATGTGGTCTAGAGCATAAGgtacgtgcccaaactttgtgctagccgcactaacttacattttctggaac Alignment from Spaln_aa2Genome GGCGTCTACTGGGCTGTCTGAAGGGGCTT-GCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaacaccccccataccctgtgtcctatagGTAGACTAGTGGGCTGTCTGAAGGGTCTTcGCAGGTAGTGTTCGTGGGCTGCAGTGCCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGGACAGAGTCTTGAGGATATACAGGATCCGCAATCCATGTGGTCTAGAGCATAAGgtacgtgcccaaactttgtgctagccgcactaacttacattttctggaac Alignment from Spaln_nt2Genome GGCGTCTACTGGGCTGTCTGAAGGGGCTT-GCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaacaccccccataccctgtgtcctatagGTAGACTAGTGGGCTGTCTGAAGGGTCTTCGCAGGTAGTGTTCGTGGGCTGCAGTGCCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGGACAGAGTCTTGAGGATATACAGGATCCGCAATCCATGTGGTCTAGAGCATAAGgtacgtgcccaaactttgtgctagccgcactaacttacattttctggaac Alignment from Pairagon GGCGTCTACTGGGCTGTCTGAAGGGGCTT-GCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaacaccccccataccctgtgtcctatagGTAGACTAGTGGGCTGTCTGAAGGGTCTTCGCAGGTAGTGTTCGTGGGCTGCAGTGCCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGGACAGAGTCTTGAGGATATACAGGATCCGCAATCCATGTGGTCTAGAGCATAAGgtacgtgcccaaactttgtgctagccgcactaacttacattttctggaac Alignment from Exonerate_protein2genome GGCGTCTACTGGGCTGTCTGAAGGGGCTT-GCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaacaccccccataccctgtgtcctatagGTAGACTAGTGGGCTGTCTGAAGGGTCTTCGCAGGTAGTGTTCGTGGGCTGCAGTGCCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGGACAGAGTCTTGAGGATATACAGGATCCGCAATCCATGTGGTCTAGAGCATAAGgtacgtgcccaaactttgtgctagccgcactaacttacattttctggaac Alignment from Exonerate_coding2genome GGCGTCTACTGGGCTGTCTGAAGGGGCTT-GCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaacaccccccataccctgtgtcctatagGTAGACTAGTGGGCTGTCTGAAGGGTCTTCGCAGGTAGTGTTCGTGGGCTGCAGTGCCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGGACAGAGTCTTGAGGATATACAGGATCCGCAATCCATGTGGTCTAGAGCATAAGgtacgtgcccaaactttgtgctagccgcactaacttacattttctggaac Alignment from GeneWise GGCGTCTACTGGGCTGTCTGAAGGGGCTT-GCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaacaccccccataccctgtgtcctatagGTAGACTAGTGGGCTGTCTGAAGGGTCTTCGCAGGTAGTGTTCGTGGGCTGCAGTGCCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGGACAGAGTCTTGAGGATATACAGGATCCGCAATCCATGTGGTCTAGAGCATAAGgtacgtgcccaaactttgtgctagccgcactaacttacattttctggaac #### Wdr96_ID10334_37 --> 0 - 1 Original Alignment ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTA-CGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAg attatctctttgaacattgttatgggttggtcctccctttgtggttacagAATCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAGGAAACTGGGCAAATACAGCAATCAGAAGGCTGTTGCAAATTACACCCTAAGCTGTAATCTACCGGGAAGAACTTGTGGCTGTCTCAGAGAGACAAGACATTTGTAATGAAATAggtaaggacatttttctgataaagtagatggattctaacagtcccagcaac Alignment from CESAR ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTA-CGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAg attatctctttgaacattgttatgggttggtcctccctttgtggttacagAATCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAGGAAACTGGGCAAATACAGCAATCAGAAGGCTGTTGCAAATTACACCCTAAGCTGTAATCTACCGGGAAGAACTTGTGGCTGTCTCAGAGAGACAAGACATTTGTAATGAAATAggtaaggacatttttctgataaagtagatggattctaacagtcccagcaac Alignment from Spaln_aa2Genome ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTA-CGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG attatctctttgaacattgttatgggttggtcctccctttgtggttacagAATCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAGGAAACTGGGCAAATACAGCAATCAGAAGGCTGTTGCAAATTACACCCTAAGCTGTAATCTAcCGGGAAGAACTTGTGGCTGTCTCAGAGAGACAAGACATTTGTAATGAAATAGgtaaggacatttttctgataaagtagatggattctaacagtcccagcaac Alignment from Spaln_nt2Genome ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTA-CGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG attatctctttgaacattgttatgggttggtcctccctttgtggttacagAATCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAGGAAACTGGGCAAATACAGCAATCAGAAGGCTGTTGCAAATTACACCCTAAGCTGTAATCTACCGGGAAGAACTTGTGGCTGTCTCAGAGAGACAAGACATTTGTAATGAAATAGgtaaggacatttttctgataaagtagatggattctaacagtcccagcaac Alignment from Pairagon ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTA-CGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG attatctctttgaacattgttatgggttggtcctccctttgtggttacagAATCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAGGAAACTGGGCAAATACAGCAATCAGAAGGCTGTTGCAAATTACACCCTAAGCTGTAATCTACCGGGAAGAACTTGTGGCTGTCTCAGAGAGACAAGACATTTGTAATGAAATAGgtaaggacatttttctgataaagtagatggattctaacagtcccagcaac Alignment from Exonerate_protein2genome ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTA-CGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG attatctctttgaacattgttatgggttggtcctccctttgtggttacagAATCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAGGAAACTGGGCAAATACAGCAATCAGAAGGCTGTTGCAAATTACACCCTAAGCTGTAATCTACCGGGAAGAACTTGTGGCTGTCTCAGAGAGACAAGACATTTGTAATGAAATAGgtaaggacatttttctgataaagtagatggattctaacagtcccagcaac Alignment from Exonerate_coding2genome ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAATCTA-CGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG attatctctttgaacattgttatgggttggtcctccctttgtggttacagAATCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAGGAAACTGGGCAAATACAGCAATCAGAAGGCTGTTGCAAATTACACCCTAAGCTGTAATCTACCGGGAAGAACTTGTGGCTGTCTCAGAGAGACAAGACATTTGTAATGAAATAGgtaaggacatttttctgataaagtagatggattctaacagtcccagcaac Alignment from GeneWise ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAAGATGTTGCAAATTACACCCTAAGCTGTAAT-CTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG attatctctttgaacattgttatgggttggtcctccctttgtggttacagAATCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAGGAAACTGGGCAAATACAGCAATCAGAAGGCTGTTGCAAATTACACCCTAAGCTGTAATCTACCGGGAAGAACTTGTGGCTGTCTCAGAGAGACAAGACATTTGTAATGAAATAGgtaaggacatttttctgataaagtagatggattctaacagtcccagcaac #### Yif1a_ID834_6 --> 1 - 2 Original Alignment gTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTG-GCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGgg gtctaagctgacccaccttgggcacctacttaactgtcctttctacttaggTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGGTGTTCATGGAGGTGCTACGCTCTGCTTTTGGGGCTTTACCTGGCCACTGTACGCAGCGAACTGAGTACCTTCCACCTCTTGGCTTACAGCAGTTACAAATATGTGgggtaagcatccaaaggccaagaggagtctagaaggtcctaggctaggggtg Alignment from CESAR gTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTG-GCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGgg gtctaagctgacccaccttgggcacctacttaactgtcctttctacttaggTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGGTGTTCATGGAGGTGCTACGCTCTGCTTTTGGGGCTTTACCTGGCCACTGTACGCAGCGAACTGAGTACCTTCCACCTCTTGGCTTACAGCAGTTACAAATATGTGgggtaagcatccaaaggccaagaggagtctagaaggtcctaggctaggggtg Alignment from Spaln_aa2Genome GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTG-GCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctaagctgacccaccttgggcacctacttaactgtcctttctacttagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGGTGTTCATGGAGGTGCTAcGCTCTGCTTTTGGGGCTTTACCTGGCCACTGTACGCAGCGAACTGAGTACCTTCCACCTCTTGGCTTACAGCAGTTACAAATATGTGGGgtaagcatccaaaggccaagaggagtctagaaggtcctaggctaggggtg Alignment from Spaln_nt2Genome GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTG-GCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctaagctgacccaccttgggcacctacttaactgtcctttctacttagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGGTGTTCATGGAGGTGCTACGCTCTGCTTTTGGGGCTTTACCTGGCCACTGTACGCAGCGAACTGAGTACCTTCCACCTCTTGGCTTACAGCAGTTACAAATATGTGGGgtaagcatccaaaggccaagaggagtctagaaggtcctaggctaggggtg Alignment from Pairagon GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTG-GCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctaagctgacccaccttgggcacctacttaactgtcctttctacttagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGGTGTTCATGGAGGTGCTACGCTCTGCTTTTGGGGCTTTACCTGGCCACTGTACGCAGCGAACTGAGTACCTTCCACCTCTTGGCTTACAGCAGTTACAAATATGTGGGgtaagcatccaaaggccaagaggagtctagaaggtcctaggctaggggtg Alignment from Exonerate_protein2genome GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTG-GCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctaagctgacccaccttgggcacctacttaactgtcctttctacttagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGGTGTTCATGGAGGTGCTACGCTCTGCTTTTGGGGCTTTACCTGGCCACTGTACGCAGCGAACTGAGTACCTTCCACCTCTTGGCTTACAGCAGTTACAAATATGTGGGgtaagcatccaaaggccaagaggagtctagaaggtcctaggctaggggtg Alignment from Exonerate_coding2genome GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTG-GCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctaagctgacccaccttgggcacctacttaactgtcctttctacttagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGGTGTTCATGGAGGTGCTACGCTCTGCTTTTGGGGCTTTACCTGGCCACTGTACGCAGCGAACTGAGTACCTTCCACCTCTTGGCTTACAGCAGTTACAAATATGTGGGgtaagcatccaaaggccaagaggagtctagaaggtcctaggctaggggtg Alignment from GeneWise GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGGGTGTTCATGGAGGTGTTG-GCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctaagctgacccaccttgggcacctacttaactgtcctttctacttagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGGTGTTCATGGAGGTGCTACGCTCTGCTTTTGGGGCTTTACCTGGCCACTGTACGCAGCGAACTGAGTACCTTCCACCTCTTGGCTTACAGCAGTTACAAATATGTGGGgtaagcatccaaaggccaagaggagtctagaaggtcctaggctaggggtg #### Yif1a_ID835_7 --> 1 - 0 Original Alignment gATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTAC-TACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT tttgctcactgcattcctaattcactcatctctcctctcttgtttttaaggATGATCTTGAGTGTGCTCACAGGACTGCTCTTCGGCAGTGACAGCTACCTATGTGGTCTTGGCCTGGACATCATCTGCACTTATGTACTTCATTgtgagtgtggggtggccccggcccccctcctctgagtaacattttattgt Alignment from CESAR gATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTAC-TACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT tttgctcactgcattcctaattcactcatctctcctctcttgtttttaaggATGATCTTGAGTGTGCTCACAGGACTGCTCTTCGGCAGTGACAGCTACCTATGTGGTCTTGGCCTGGACATCATCTGCACTTATGTACTTCATTgtgagtgtggggtggccccggcccccctcctctgagtaacattttccctt Alignment from Spaln_aa2Genome GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTAC-TACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT tttgctcactgcattcctaattcactcatctctcctctcttgtttttaagGATGATCTTGAGTGTGCTCACAGGACTGCTCTTCGGCAGTGACAGCTACcTATGTGGTCTTGGCCTGGACATCATCTGCACTTATGTACTTCATTgtgagtgtggggtggccccggcccccctcctctgagtaacattttattgt Alignment from Spaln_nt2Genome GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTAC-TACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT tttgctcactgcattcctaattcactcatctctcctctcttgtttttaagGATGATCTTGAGTGTGCTCACAGGACTGCTCTTCGGCAGTGACAGCTACCTATGTGGTCTTGGCCTGGACATCATCTGCACTTATGTACTTCATTgtgagtgtggggtggccccggcccccctcctctgagtaacattttattgt Alignment from Pairagon GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTA-CTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT tttgctcactgcattcctaattcactcatctctcctctcttgtttttaagGATGATCTTGAGTGTGCTCACAGGACTGCTCTTCGGCAGTGACAGCTACCTATGTGGTCTTGGCCTGGACATCATCTGCACTTATGTACTTCATTgtgagtgtggggtggccccggcccccctcctctgagtaacattttattgt Alignment from Exonerate_protein2genome GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTAC-TACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT tttgctcactgcattcctaattcactcatctctcctctcttgtttttaagGATGATCTTGAGTGTGCTCACAGGACTGCTCTTCGGCAGTGACAGCTACCTATGTGGTCTTGGCCTGGACATCATCTGCACTTATGTACTTCATTgtgagtgtggggtggccccggcccccctcctctgagtaacattttattgt Alignment from Exonerate_coding2genome GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTAC-TACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT tttgctcactgcattcctaattcactcatctctcctctcttgtttttaagGATGATCTTGAGTGTGCTCACAGGACTGCTCTTCGGCAGTGACAGCTACCTATGTGGTCTTGGCCTGGACATCATCTGCACTTATGTACTTCATTgtgagtgtggggtggccccggcccccctcctctgagtaacattttattgt Alignment from GeneWise -ATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTAC-TACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT tttgctcactgcattcctaattcactcatctctcctctcttgtttttaagGATGATCTTGAGTGTGCTCACAGGACTGCTCTTCGGCAGTGACAGCTACCTATGTGGTCTTGGCCTGGACATCATCTGCACTTATGTACTTCATTgtgagtgtggggtggccccggcccccctcctctgagtaacattttattgt #### Zdhhc16_ID8345_2 --> 0 - 0 Original Alignment GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTC-TATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtactgctccctagtagcctttccacttgtgcttgtcacccttcagGTGTTTGTGGTGCTAGTGATTGTGTTGGCTGGTTCTATTGTAGCCATTGCTTATCTGTGTGTTCTGCCACTCATCCTCCGAACCTACTCAGTACCACAGCTCTGCTGGCACTTCCTCCTATAGTCACTGGAATCTCATACTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCATGAATATCCACCCCAGgttaggctccatagtgcatggcaagagacaatgctggctgctatgctagc Alignment from CESAR GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTC-TATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtactgctccctagtagcctttccacttgtgcttgtcacccttcagGTGTTTGTGGTGCTAGTGATTGTGTTGGCTGGTTCTATTGTAGCCATTGCTTATCTGTGTGTTCTGCCACTCATCCTCCGAACCTACTCAGTACCACAGCTCTGCTGGCACTTCCTCCTATAGTCACTGGAATCTCATACTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCATGAATATCCACCCCAGgttaggctccatagtgcatggcaagagacaatgctggctgctatgctagc Alignment from Spaln_aa2Genome GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTC-TATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtactgctccctagtagcctttccacttgtgcttgtcacccttcagGTGTTTGTGGTGCTAGTGATTGTGTTGGCTGGTTCTATTGTAGCCATTGCTTATCTGTGTGTTCTGCCACTCATCCTCCGAACCTACTCAGTACCACAGCTCTGCTGGCACTTCCTCcTATAGTCACTGGAATCTCATACTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCATGAATATCCACCCCAGgttaggctccatagtgcatggcaagagacaatgctggctgctatgctagc Alignment from Spaln_nt2Genome GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCAT-TTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtactgctccctagtagcctttccacttgtgcttgtcacccttcagGTGTTTGTGGTGCTAGTGATTGTGTTGGCTGGTTCTATTGTAGCCATTGCTTATCTGTGTGTTCTGCCACTCATCCTCCGAACCTACTCAGTACCACAGCTCTGCTGGCACTTCCTCCTATAGTCACTGGAATCTCATACTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCATGAATATCCACCCCAGgttaggctccatagtgcatggcaagagacaatgctggctgctatgctagc Alignment from Pairagon GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCA-TTTCTTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtactgctccctagtagcctttccacttgtgcttgtcacccttcagGTGTTTGTGGTGCTAGTGATTGTGTTGGCTGGTTCTATTGTAGCCATTGCTTATCTGTGTGTTCTGCCACTCATCCTCCGAACCTACTCAGTACCACAGCTCTGCTGGCACTTCCTCCTATAGTCACTGGAATCTCATACTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCATGAATATCCACCCCAGgttaggctccatagtgcatggcaagagacaatgctggctgctatgctagc Alignment from Exonerate_protein2genome GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTC-TATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtactgctccctagtagcctttccacttgtgcttgtcacccttcagGTGTTTGTGGTGCTAGTGATTGTGTTGGCTGGTTCTATTGTAGCCATTGCTTATCTGTGTGTTCTGCCACTCATCCTCCGAACCTACTCAGTACCACAGCTCTGCTGGCACTTCCTCCTATAGTCACTGGAATCTCATACTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCATGAATATCCACCCCAGgttaggctccatagtgcatggcaagagacaatgctggctgctatgctagc Alignment from Exonerate_coding2genome GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTCTTC-TATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtactgctccctagtagcctttccacttgtgcttgtcacccttcagGTGTTTGTGGTGCTAGTGATTGTGTTGGCTGGTTCTATTGTAGCCATTGCTTATCTGTGTGTTCTGCCACTCATCCTCCGAACCTACTCAGTACCACAGCTCTGCTGGCACTTCCTCCTATAGTCACTGGAATCTCATACTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCATGAATATCCACCCCAGgttaggctccatagtgcatggcaagagacaatgctggctgctatgctagc Alignment from GeneWise GTGTTTGTGGTGCTGGTGATCGTGCTGACCGGGTCCATCGTGGCCATTGCTTATCTGTGTGTCCTGCCCCTCATCCTCCGAACCTACTCGGTACCACGGCTCTGCTGGCATTTC-TTCTATAGTCACTGGAATCTGATCCTCATCGTCTTCCATTACTACCAGGCCATCACCACTCCTCCTGGATACCCACCCCAG ctcagtactgctccctagtagcctttccacttgtgcttgtcacccttcagGTGTTTGTGGTGCTAGTGATTGTGTTGGCTGGTTCTATTGTAGCCATTGCTTATCTGTGTGTTCTGCCACTCATCCTCCGAACCTACTCAGTACCACAGCTCTGCTGGCACTTCCTCCTATAGTCACTGGAATCTCATACTCATTGTCTTCCATTATTATCAGGCCATTACCACTCCCCATGAATATCCACCCCAGgttaggctccatagtgcatggcaagagacaatgctggctgctatgctagc #### Zdhhc16_ID8347_4 --> 1 - 1 Original Alignment gTGTGTGCTGAAGATG-GATCATCACTGCc atcccaagattctcagttgcactagcagctttgttttgctttcttatcaggTGTGTGCTGAAGATGCGATCATCACTGTcgtaagctattgttcacgtatcctattgttcacttcagacaaccttatacc Alignment from CESAR gTGTGTGCTGAAGATG-GATCATCACTGCc atcccaagattctcagttgcactagcagctttgttttgctttcttatcaggTGTGTGCTGAAGATGCGATCATCACTGTcgtaagctattgttcacgtatcctattgttcacttcagacaaccttatacc Alignment from Spaln_aa2Genome GTGTGTGCTGAAGATG-GATCATCACTGCC atcccaagattctcagttgcactagcagctttgttttgctttcttatcagGTGTGTGCTGAAGATGcGATCATCACTGTCgtaagctattgttcacgtatcctattgttcacttcagacaaccttatacc Alignment from Spaln_nt2Genome GTGTGTGCTGAAGATG-GATCATCACTGCC atcccaagattctcagttgcactagcagctttgttttgctttcttatcagGTGTGTGCTGAAGATGCGATCATCACTGTCgtaagctattgttcacgtatcctattgttcacttcagacaaccttatacc Alignment from Pairagon GTGTGTGCTGAAGATG-GATCATCACTGCC atcccaagattctcagttgcactagcagctttgttttgctttcttatcagGTGTGTGCTGAAGATGCGATCATCACTGTCgtaagctattgttcacgtatcctattgttcacttcagacaaccttatacc Alignment from Exonerate_protein2genome GTGTGTGCTGAAGATG-GATCATCACTGCC atcccaagattctcagttgcactagcagctttgttttgctttcttatcagGTGTGTGCTGAAGATGCGATCATCACTGTCgtaagctattgttcacgtatcctattgttcacttcagacaaccttatacc Alignment from Exonerate_coding2genome atcccaagattctcagttgcactagcagctttgttttgctttcttatcaggtgtgtgctgaagatgcgatcatcactgtcgtaagctattgttcacgtatcctattgttcacttcagacaaccttatacc Alignment from GeneWise atcccaagattctcagttgcactagcagctttgttttgctttcttatcaggtgtgtgctgaagatgcgatcatcactgtcgtaagctattgttcacgtatcctattgttcacttcagacaaccttatacc #### Zdhhc6_ID11621_8 --> 0 - 2 Original Alignment GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAG-TTCATCTTAGCAACGAGAGGGCTGcg ataacttagatatgggtacatcttagctctgtatattcttctctttgtagGTTCGCTATAAGTTCATAGAAGATTACAATGGTGCCAGCTGCCCCTTGAATAGAGGAGTGAGAACCTTCTTTACAAGCCCCTGTACTGAGGAGCCTCGGATTAGGCTGCAAAAAGGTGAGCTTCATCTTAGCAATGAGAGGGCTGcggtgagtgaggggggtgtccttcgttgaaaaactggcattgtaaccgaagc Alignment from CESAR GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAG-TTCATCTTAGCAACGAGAGGGCTGcg ataacttagatatgggtacatcttagctctgtatattcttctctttgtagGTTCGCTATAAGTTCATAGAAGATTACAATGGTGCCAGCTGCCCCTTGAATAGAGGAGTGAGAACCTTCTTTACAAGCCCCTGTACTGAGGAGCCTCGGATTAGGCTGCAAAAAGGTGAGCTTCATCTTAGCAATGAGAGGGCTGcggtgagtgaggggggtgtccttcgttgaaaaactggcattgtaatgaccat Alignment from Spaln_aa2Genome GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAG-TTCATCTTAGCAACGAGAGGGCTGCG ataacttagatatgggtacatcttagctctgtatattcttctctttgtagGTTCGCTATAAGTTCATAGAAGATTACAATGGTGCCAGCTGCCCCTTGAATAGAGGAGTGAGAACCTTCTTTACAAGCCCCTGTACTGAGGAGCCTCGGATTAGGCTGCAAAAAGGTGAGcTTCATCTTAGCAATGAGAGGGCTGCGgtgagtgaggggggtgtccttcgttgaaaaactggcattgtaaccgaagc Alignment from Spaln_nt2Genome GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAG-TTCATCTTAGCAACGAGAGGGCTGCG ataacttagatatgggtacatcttagctctgtatattcttctctttgtagGTTCGCTATAAGTTCATAGAAGATTACAATGGTGCCAGCTGCCCCTTGAATAGAGGAGTGAGAACCTTCTTTACAAGCCCCTGTACTGAGGAGCCTCGGATTAGGCTGCAAAAAGGTGAGCTTCATCTTAGCAATGAGAGGGCTGCGgtgagtgaggggggtgtccttcgttgaaaaactggcattgtaaccgaagc Alignment from Pairagon GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAG-TTCATCTTAGCAACGAGAGGGCTGCG ataacttagatatgggtacatcttagctctgtatattcttctctttgtagGTTCGCTATAAGTTCATAGAAGATTACAATGGTGCCAGCTGCCCCTTGAATAGAGGAGTGAGAACCTTCTTTACAAGCCCCTGTACTGAGGAGCCTCGGATTAGGCTGCAAAAAGGTGAGCTTCATCTTAGCAATGAGAGGGCTGCGgtgagtgaggggggtgtccttcgttgaaaaactggcattgtaaccgaagc Alignment from Exonerate_protein2genome GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAG-TTCATCTTAGCAACGAGAGGGCTGCG ataacttagatatgggtacatcttagctctgtatattcttctctttgtagGTTCGCTATAAGTTCATAGAAGATTACAATGGTGCCAGCTGCCCCTTGAATAGAGGAGTGAGAACCTTCTTTACAAGCCCCTGTACTGAGGAGCCTCGGATTAGGCTGCAAAAAGGTGAGCTTCATCTTAGCAATGAGAGGGCTGCGgtgagtgaggggggtgtccttcgttgaaaaactggcattgtaaccgaagc Alignment from Exonerate_coding2genome GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAG-TTCATCTTAGCAACGAGAGGGCTGCG ataacttagatatgggtacatcttagctctgtatattcttctctttgtagGTTCGCTATAAGTTCATAGAAGATTACAATGGTGCCAGCTGCCCCTTGAATAGAGGAGTGAGAACCTTCTTTACAAGCCCCTGTACTGAGGAGCCTCGGATTAGGCTGCAAAAAGGTGAGCTTCATCTTAGCAATGAGAGGGCTGCGgtgagtgaggggggtgtccttcgttgaaaaactggcattgtaaccgaagc Alignment from GeneWise GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGA-GAGTTCATCTTAGCAACGAGAGGGCTGCG ataacttagatatgggtacatcttagctctgtatattcttctctttgtagGTTCGCTATAAGTTCATAGAAGATTACAATGGTGCCAGCTGCCCCTTGAATAGAGGAGTGAGAACCTTCTTTACAAGCCCCTGTACTGAGGAGCCTCGGATTAGGCTGCAAAAAGGTGAGCTTCATCTTAGCAATGAGAGGGCTGCGgtgagtgaggggggtgtccttcgttgaaaaactggcattgtaaccgaagc #### Zfand5_ID4879_2 --> 2 - 2 Original Alignment ggACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGC-ACATCTGAAAAATCAag ttttctgtaagtaagaaacaaataagcatcatgtttctcttatttcttaggaACAGCTAGCGGTTCTAACAGTCCCACCTCAGATGCTGCATCAGTACAGAAACCAGATGCTGGTTTGAATAACTGTGAGGGTGCTGCTGGCAGTCACATCTGAAAAATCAaggtatgagggaatatttctcagattttctagactaagctattttcgctatg Alignment from CESAR ggACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGC-ACATCTGAAAAATCAag ttttctgtaagtaagaaacaaataagcatcatgtttctcttatttcttaggaACAGCTAGCGGTTCTAACAGTCCCACCTCAGATGCTGCATCAGTACAGAAACCAGATGCTGGTTTGAATAACTGTGAGGGTGCTGCTGGCAGTCACATCTGAAAAATCAaggtatgagggaatatttctcagattttctagactaagctattttcgctatg Alignment from Spaln_aa2Genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGC-ACATCTGAAAAATCAAG ttttctgtaagtaagaaacaaataagcatcatgtttctcttatttcttagGAACAGCTAGCGGTTCTAACAGTCCCACCTCAGATGCTGCATCAGTACAGAAACCAGATGCTGGTTTGAATAACTGTGAGGGTGCTGCTGGCAGTcACATCTGAAAAATCAAGgtatgagggaatatttctcagattttctagactaagctattttcgctatg Alignment from Spaln_nt2Genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAG-CACATCTGAAAAATCAAG ttttctgtaagtaagaaacaaataagcatcatgtttctcttatttcttagGAACAGCTAGCGGTTCTAACAGTCCCACCTCAGATGCTGCATCAGTACAGAAACCAGATGCTGGTTTGAATAACTGTGAGGGTGCTGCTGGCAGTCACATCTGAAAAATCAAGgtatgagggaatatttctcagattttctagactaagctattttcgctatg Alignment from Pairagon GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAG-CACATCTGAAAAATCAAG ttttctgtaagtaagaaacaaataagcatcatgtttctcttatttcttagGAACAGCTAGCGGTTCTAACAGTCCCACCTCAGATGCTGCATCAGTACAGAAACCAGATGCTGGTTTGAATAACTGTGAGGGTGCTGCTGGCAGTCACATCTGAAAAATCAAGgtatgagggaatatttctcagattttctagactaagctattttcgctatg Alignment from Exonerate_protein2genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGC-ACATCTGAAAAATCAAG ttttctgtaagtaagaaacaaataagcatcatgtttctcttatttcttagGAACAGCTAGCGGTTCTAACAGTCCCACCTCAGATGCTGCATCAGTACAGAAACCAGATGCTGGTTTGAATAACTGTGAGGGTGCTGCTGGCAGTCACATCTGAAAAATCAAGgtatgagggaatatttctcagattttctagactaagctattttcgctatg Alignment from Exonerate_coding2genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGC-ACATCTGAAAAATCAAG ttttctgtaagtaagaaacaaataagcatcatgtttctcttatttcttagGAACAGCTAGCGGTTCTAACAGTCCCACCTCAGATGCTGCATCAGTACAGAAACCAGATGCTGGTTTGAATAACTGTGAGGGTGCTGCTGGCAGTCACATCTGAAAAATCAAGgtatgagggaatatttctcagattttctagactaagctattttcgctatg Alignment from GeneWise GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGC-AGCACATCTGAAAAATCAAG ttttctgtaagtaagaaacaaataagcatcatgtttctcttatttcttagGAACAGCTAGCGGTTCTAACAGTCCCACCTCAGATGCTGCATCAGTACAGAAACCAGATGCTGGTTTGAATAACTGTGAGGGTGCTGCTGGCAGTCACATCTGAAAAATCAAGgtatgagggaatatttctcagattttctagactaagctattttcgctatg #### Zfp91_ID3462_4 --> 2 - 2 Original Alignment atGTTCCAGAAGAACATCAG-TCTCCCGGTGGCATTag gagtttttggctgcataagtgtctcaatccaaactgtgttttgtttgcagatGTTCCAGAAGAACATCAACTCCCCTGGTGGCATTaggtaagagtctactccatacatacttaatgtttcaacatttcagcaatgat Alignment from CESAR atGTTCCAGAAGAACATCAG-TCTCCCGGTGGCATTag gagtttttggctgcataagtgtctcaatccaaactgtgttttgtttgcagatGTTCCAGAAGAACATCAACTCCCCTGGTGGCATTaggtaagagtctactccatacatacttaatgtttcaacatttcagcaatgat Alignment from Spaln_aa2Genome ATGTTCCAGAAGAACATCAG-TCTCCCGGTGGCATTAG gagtttttggctgcataagtgtctcaatccaaactgtgttttgtttgcagATGTTCCAGAAGAACATCAAcTCCCCTGGTGGCATTAGgtaagagtctactccatacatacttaatgtttcaacatttcagcaatgat Alignment from Spaln_nt2Genome ATGTTCCAGAAGAACATCAG-TCTCCCGGTGGCATTAG gagtttttggctgcataagtgtctcaatccaaactgtgttttgtttgcagATGTTCCAGAAGAACATCAACTCCCCTGGTGGCATTAGgtaagagtctactccatacatacttaatgtttcaacatttcagcaatgat Alignment from Pairagon ATGTTCCAGAAGAACATCAG-TCTCCCGGTGGCATTAG gagtttttggctgcataagtgtctcaatccaaactgtgttttgtttgcagATGTTCCAGAAGAACATCAACTCCCCTGGTGGCATTAGgtaagagtctactccatacatacttaatgtttcaacatttcagcaatgat Alignment from Exonerate_protein2genome ATGTTCCAGAAGAACATCAG-TCTCCCGGTGGCATTAG gagtttttggctgcataagtgtctcaatccaaactgtgttttgtttgcagATGTTCCAGAAGAACATCAACTCCCCTGGTGGCATTAGgtaagagtctactccatacatacttaatgtttcaacatttcagcaatgat Alignment from Exonerate_coding2genome gagtttttggctgcataagtgtctcaatccaaactgtgttttgtttgcagatgttccagaagaacatcaactcccctggtggcattaggtaagagtctactccatacatacttaatgtttcaacatttcagcaatgat Alignment from GeneWise gagtttttggctgcataagtgtctcaatccaaactgtgttttgtttgcagatgttccagaagaacatcaactcccctggtggcattaggtaagagtctactccatacatacttaatgtttcaacatttcagcaatgat #### Zfyve27_ID8429_11 --> 0 - 1 Original Alignment CGGAGCTGCAGCAACTGTGGGAACAGCTTC-TGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAg gtggcctgcattgtccaagggtcacaccgcaattttttaaacctttcaagCGAAGTTGCAGCAACTGTGCAAACAGCTTCCTGCTCACGTTGTTGCTCATTCAAGGTCCCCCGCTCCTCCATGGGAGCCACAggtaagagaggaagtctgtggataggactggggccgctgagagcaagagag Alignment from CESAR CGGAGCTGCAGCAACTGTGGGAACAGCTTC-TGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAg gtggcctgcattgtccaagggtcacaccgcaattttttaaacctttcaagCGAAGTTGCAGCAACTGTGCAAACAGCTTCCTGCTCACGTTGTTGCTCATTCAAGGTCCCCCGCTCCTCCATGGGAGCCACAggtaagagaggaagtctgtggataggactggggccgctgagagcaagagag Alignment from Spaln_aa2Genome CGGAGCTGCAGCAACTGTGGGAACAGCTTC-TGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtggcctgcattgtccaagggtcacaccgcaattttttaaacctttcaagCGAAGTTGCAGCAACTGTGCAAACAGCTTCcTGCTCACGTTGTTGCTCATTCAAGGTCCCCCGCTCCTCCATGGGAGCCACAGgtaagagaggaagtctgtggataggactggggccgctgagagcaagagag Alignment from Spaln_nt2Genome CGGAGCTGCAGCAACTGTGGGAACAGCTT-CTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtggcctgcattgtccaagggtcacaccgcaattttttaaacctttcaagCGAAGTTGCAGCAACTGTGCAAACAGCTTCCTGCTCACGTTGTTGCTCATTCAAGGTCCCCCGCTCCTCCATGGGAGCCACAGgtaagagaggaagtctgtggataggactggggccgctgagagcaagagag Alignment from Pairagon CGGAGCTGCAGCAACTGTGGGAACAGCTT-CTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtggcctgcattgtccaagggtcacaccgcaattttttaaacctttcaagCGAAGTTGCAGCAACTGTGCAAACAGCTTCCTGCTCACGTTGTTGCTCATTCAAGGTCCCCCGCTCCTCCATGGGAGCCACAGgtaagagaggaagtctgtggataggactggggccgctgagagcaagagag Alignment from Exonerate_protein2genome CGGAGCTGCAGCAACTGTGGGAACAGCTTC-TGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtggcctgcattgtccaagggtcacaccgcaattttttaaacctttcaagCGAAGTTGCAGCAACTGTGCAAACAGCTTCCTGCTCACGTTGTTGCTCATTCAAGGTCCCCCGCTCCTCCATGGGAGCCACAGgtaagagaggaagtctgtggataggactggggccgctgagagcaagagag Alignment from Exonerate_coding2genome CGGAGCTGCAGCAACTGTGGGAACAGCTTC-TGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtggcctgcattgtccaagggtcacaccgcaattttttaaacctttcaagCGAAGTTGCAGCAACTGTGCAAACAGCTTCCTGCTCACGTTGTTGCTCATTCAAGGTCCCCCGCTCCTCCATGGGAGCCACAGgtaagagaggaagtctgtggataggactggggccgctgagagcaagagag Alignment from GeneWise CGGAGCTGCAGCAACTGTGGGAACAGC-TTCTGCTCGCGGTGTTGCTCCTTCAAGGTGCCCAGGTCCTCTATGGGAGCCACAG gtggcctgcattgtccaagggtcacaccgcaattttttaaacctttcaagCGAAGTTGCAGCAACTGTGCAAACAGCTTCCTGCTCACGTTGTTGCTCATTCAAGGTCCCCCGCTCCTCCATGGGAGCCACAGgtaagagaggaagtctgtggataggactggggccgctgagagcaagagag #### Zp1_ID3061_11 --> 2 - 1 Original Alignment ggCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCT-GCTAAACTTGAGCCCTCAg gaccctttgaccaccaggggtcatagtatatgtatgtatgtatttttcagggCGTCGACGGTTCCCTGGTCACCACAACATCACTCTCCGAGCTCTGGATATTGTAAGCTCTCCAGGTGCAGTGGGCTTTGAGGATGCACGCTAAACTTGAGCCCTCAggtaagtggatgtggggatgcacctaagtgtcttgaccctttctgtgatgt Alignment from CESAR ggCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCT-GCTAAACTTGAGCCCTCAg gaccctttgaccaccaggggtcatagtatatgtatgtatgtatttttcagggCGTCGACGGTTCCCTGGTCACCACAACATCACTCTCCGAGCTCTGGATATTGTAAGCTCTCCAGGTGCAGTGGGCTTTGAGGATGCACGCTAAACTTGAGCCCTCAggtaagtggatgtggggatgcacctaagtgtcttgaccctttctgtgatgt Alignment from Spaln_aa2Genome GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCT-GCTAAACTTGAGCCCTCAG gaccctttgaccaccaggggtcatagtatatgtatgtatgtatttttcagGGCGTCGACGGTTCCCTGGTCACCACAACATCACTCTCCGAGCTCTGGATATTGTAAGCTCTCCAGGTGCAGTGGGCTTTGAGGATGCAcGCTAAACTTGAGCCCTCAGgtaagtggatgtggggatgcacctaagtgtcttgaccctttctgtgatgt Alignment from Spaln_nt2Genome GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCT-GCTAAACTTGAGCCCTCAG gaccctttgaccaccaggggtcatagtatatgtatgtatgtatttttcagGGCGTCGACGGTTCCCTGGTCACCACAACATCACTCTCCGAGCTCTGGATATTGTAAGCTCTCCAGGTGCAGTGGGCTTTGAGGATGCACGCTAAACTTGAGCCCTCAGgtaagtggatgtggggatgcacctaagtgtcttgaccctttctgtgatgt Alignment from Pairagon GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGC-TGCTAAACTTGAGCCCTCAG gaccctttgaccaccaggggtcatagtatatgtatgtatgtatttttcagGGCGTCGACGGTTCCCTGGTCACCACAACATCACTCTCCGAGCTCTGGATATTGTAAGCTCTCCAGGTGCAGTGGGCTTTGAGGATGCACGCTAAACTTGAGCCCTCAGgtaagtggatgtggggatgcacctaagtgtcttgaccctttctgtgatgt Alignment from Exonerate_protein2genome GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCT-GCTAAACTTGAGCCCTCAG gaccctttgaccaccaggggtcatagtatatgtatgtatgtatttttcagGGCGTCGACGGTTCCCTGGTCACCACAACATCACTCTCCGAGCTCTGGATATTGTAAGCTCTCCAGGTGCAGTGGGCTTTGAGGATGCACGCTAAACTTGAGCCCTCAGgtaagtggatgtggggatgcacctaagtgtcttgaccctttctgtgatgt Alignment from Exonerate_coding2genome GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCT-GCTAAACTTGAGCCCTCAG gaccctttgaccaccaggggtcatagtatatgtatgtatgtatttttcagGGCGTCGACGGTTCCCTGGTCACCACAACATCACTCTCCGAGCTCTGGATATTGTAAGCTCTCCAGGTGCAGTGGGCTTTGAGGATGCACGCTAAACTTGAGCCCTCAGgtaagtggatgtggggatgcacctaagtgtcttgaccctttctgtgatgt Alignment from GeneWise GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCT-GCTAAACTTGAGCCCTCAG gaccctttgaccaccaggggtcatagtatatgtatgtatgtatttttcagGGCGTCGACGGTTCCCTGGTCACCACAACATCACTCTCCGAGCTCTGGATATTGTAAGCTCTCCAGGTGCAGTGGGCTTTGAGGATGCACGCTAAACTTGAGCCCTCAGgtaagtggatgtggggatgcacctaagtgtcttgaccctttctgtgatgt #### Zp1_ID3069_3 --> 0 - 1 Original Alignment GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGT-CCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAg agtgtcacaatgccacactcagctgctccctctttccttttcctatccagGATGGACGATTCCACCTGAGAGTTTTCATACAAGCTGTCTTACCAAACAGCCATGTGGATATAGCACAAGATGTCACACTGATCTGTCCCTAAACCAGATCACACTGTGACTCCAGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTTCACCTCATGCTTTTGCCCTACACCCTATCCCTGACCGTACATTGGCTGGGTCTGGCCAT------CTCACTATGTTGTACCCAGAACAAAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCTACTGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAACTAACTGAGCTGGACTCTGTAggtgtgtgaacctcatctgtgtacagactaagtactatgacctgtgagctg Alignment from CESAR GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCC-AAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAg agtgtcacaatgccacactcagctgctccctctttccttttcctatccagGATGGACGATTCCACCTGAGAGTTTTCATACAAGCTGTCTTACCAAACAGCCATGTGGATATAGCACAAGATGTCACACTGATCTGTCCCTAAACCAGATCACACTGTGACTCCAGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTTCACCTCATGCTTTTGCCCTACACCCTATCCCTGACCGTACATTGGCTGGGTCTGGCCAT------CTCACTATGTTGTACCCAGAACAAAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCTACTGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAACTAACTGAGCTGGACTCTGTAggtgtgtgaacctcatctgtgtacagactaagtactatgacctgtgagctg Alignment from Spaln_aa2Genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGT-CCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG agtgtcacaatgccacactcagctgctccctctttccttttcctatccagGATGGACGATTCCACCTGAGAGTTTTCATACAAGCTGTCTTACCAAACAGCCATGTGGATATAGCACAAGATGTCACACTGATCTGTcCCTAAACCAGATCACACTGTGACTCCAGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTTCACCTCATGCTTTTGCCCTACACCCTATCCCTGACCGTACATTGGCTGGGTCTGGCCAT------CTCACTATGTTGTACCCAGAACAAAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCTACTGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAACTAACTGAGCTGGACTCTGTAGgtgtgtgaacctcatctgtgtacagactaagtactatgacctgtgagctg Alignment from Spaln_nt2Genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCC-AAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG agtgtcacaatgccacactcagctgctccctctttccttttcctatccagGATGGACGATTCCACCTGAGAGTTTTCATACAAGCTGTCTTACCAAACAGCCATGTGGATATAGCACAAGATGTCACACTGATCTGTCCCTAAACCAGATCACACTGTGACTCCAGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTTCACCTCATGCTTTTGCCCTACACCCTATCCCTGACCGTACATTGGCTGGGTCTGGCCA------TCTCACTATGTTGTACCCAGAACAAAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCTACTGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAACTAACTGAGCTGGACTCTGTAGgtgtgtgaacctcatctgtgtacagactaagtactatgacctgtgagctg Alignment from Pairagon GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCC-AAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG agtgtcacaatgccacactcagctgctccctctttccttttcctatccagGATGGACGATTCCACCTGAGAGTTTTCATACAAGCTGTCTTACCAAACAGCCATGTGGATATAGCACAAGATGTCACACTGATCTGTCCCTAAACCAGATCACACTGTGACTCCAGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTTCACCTCATGCTTTTGCCCTACACCCTATCCCTGACCGTACATTGGCTGGGTCTGGCCA------TCTCACTATGTTGTACCCAGAACAAAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCTACTGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAACTAACTGAGCTGGACTCTGTAGgtgtgtgaacctcatctgtgtacagactaagtactatgacctgtgagctg Alignment from Exonerate_protein2genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGT-CCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG agtgtcacaatgccacactcagctgctccctctttccttttcctatccagGATGGACGATTCCACCTGAGAGTTTTCATACAAGCTGTCTTACCAAACAGCCATGTGGATATAGCACAAGATGTCACACTGATCTGTCCCTAAACCAGATCACACTGTGACTCCAGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTTCACCTCATGCTTTTGCCCTACACCCTATCCCTGACCGTACATTGGCTGGGTCTGGCCAT------CTCACTATGTTGTACCCAGAACAAAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCTACTGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAACTAACTGAGCTGGACTCTGTAGgtgtgtgaacctcatctgtgtacagactaagtactatgacctgtgagctg Alignment from Exonerate_coding2genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGT-CCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG agtgtcacaatgccacactcagctgctccctctttccttttcctatccagGATGGACGATTCCACCTGAGAGTTTTCATACAAGCTGTCTTACCAAACAGCCATGTGGATATAGCACAAGATGTCACACTGATCTGTCCCTAAACCAGATCACACTGTGACTCCAGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTTCACCTCATGCTTTTGCCCTACACCCTATCCCTGACCGTACATTGGCTGGGTCTGGCCAT------CTCACTATGTTGTACCCAGAACAAAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCTACTGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAACTAACTGAGCTGGACTCTGTAGgtgtgtgaacctcatctgtgtacagactaagtactatgacctgtgagctg Alignment from GeneWise GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCC-AAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG agtgtcacaatgccacactcagctgctccctctttccttttcctatccagGATGGACGATTCCACCTGAGAGTTTTCATACAAGCTGTCTTACCAAACAGCCATGTGGATATAGCACAAGATGTCACACTGATCTGTCCCTAAACCAGATCACACTGTGACTCCAGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTTCACCTCATGCTTTTGCCCTACACCCTATCCCTGACCGTACATTGGCTGGGTCTGGCCAT------CTCACTATGTTGTACCCAGAACAAAGCTTCATCCATCCAACTCCTGCTCCACCATCCCTAGGACCTGGACCTACTGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAACTAACTGAGCTGGACTCTGTAGgtgtgtgaacctcatctgtgtacagactaagtactatgacctgtgagctg ####