#### 1700055N04Rik_ID225_3 --> 0 - 0 Original Alignment TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAAC-CTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG acctgaaaaatagacctagcctaacttggctaggacgctatctccatcagTCAGGCCTCAAATCAGACATGAGTGAGATCATTTTGTGTGAGAACGAGGTGGACCTGGCCCTTAAGAACCCTGCTGACCTGGATGAAAGAGGAATCTTTGTCCACCAACTTGgtacgacacatcacaccagatacacaaactcacaagcatacaggtagacc Alignment from CESAR TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAAC-CTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG acctgaaaaatagacctagcctaacttggctaggacgctatctccatcagTCAGGCCTCAAATCAGACATGAGTGAGATCATTTTGTGTGAGAACGAGGTGGACCTGGCCCTTAAGAACCCTGCTGACCTGGATGAAAGAGGAATCTTTGTCCACCAACTTGgtacgacacatcacaccagatacacaaactcacaagcatacaggtagacc Alignment from Spaln_aa2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAAC-CTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG acctgaaaaatagacctagcctaacttggctaggacgctatctccatcagTCAGGCCTCAAATCAGACATGAGTGAGATCATTTTGTGTGAGAACGAGGTGGACCTGGCCCTTAAGAACcCTGCTGACCTGGATGAAAGAGGAATCTTTGTCCACCAACTTGgtacgacacatcacaccagatacacaaactcacaagcatacaggtagacc Alignment from Spaln_nt2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAAC-CTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG acctgaaaaatagacctagcctaacttggctaggacgctatctccatcagTCAGGCCTCAAATCAGACATGAGTGAGATCATTTTGTGTGAGAACGAGGTGGACCTGGCCCTTAAGAACCCTGCTGACCTGGATGAAAGAGGAATCTTTGTCCACCAACTTGgtacgacacatcacaccagatacacaaactcacaagcatacaggtagacc Alignment from Pairagon TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAA-CCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG acctgaaaaatagacctagcctaacttggctaggacgctatctccatcagTCAGGCCTCAAATCAGACATGAGTGAGATCATTTTGTGTGAGAACGAGGTGGACCTGGCCCTTAAGAACCCTGCTGACCTGGATGAAAGAGGAATCTTTGTCCACCAACTTGgtacgacacatcacaccagatacacaaactcacaagcatacaggtagacc Alignment from Exonerate_protein2genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAAC-CTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG acctgaaaaatagacctagcctaacttggctaggacgctatctccatcagTCAGGCCTCAAATCAGACATGAGTGAGATCATTTTGTGTGAGAACGAGGTGGACCTGGCCCTTAAGAACCCTGCTGACCTGGATGAAAGAGGAATCTTTGTCCACCAACTTGgtacgacacatcacaccagatacacaaactcacaagcatacaggtagacc Alignment from Exonerate_coding2genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAAC-CTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG acctgaaaaatagacctagcctaacttggctaggacgctatctccatcagTCAGGCCTCAAATCAGACATGAGTGAGATCATTTTGTGTGAGAACGAGGTGGACCTGGCCCTTAAGAACCCTGCTGACCTGGATGAAAGAGGAATCTTTGTCCACCAACTTGgtacgacacatcacaccagatacacaaactcacaagcatacaggtagacc Alignment from GeneWise TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAAC-CTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG acctgaaaaatagacctagcctaacttggctaggacgctatctccatcagTCAGGCCTCAAATCAGACATGAGTGAGATCATTTTGTGTGAGAACGAGGTGGACCTGGCCCTTAAGAACCCTGCTGACCTGGATGAAAGAGGAATCTTTGTCCACCAACTTGgtacgacacatcacaccagatacacaaactcacaagcatacaggtagacc #### 1700055N04Rik_ID226_4 --> 0 - 1 Original Alignment CTCACCAAGCTGAGCACAGCTTTC-ATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg taatgaaggccactcttacttctgtgatcacccttttcctctctccctagCTCACCAAACTGAGCACAGCCTTCCATCTGGAAGGAACCCTTTGGTCTGGTGCTTATCATTGCACCATGGAACTATCCTGTGAACCTCATGATCATACCCTTGGTGGGGGCTATTGCTACAggtaagaggggttccaagttcactagcctgatctatctctatcttcctaag Alignment from CESAR CTCACCAAGCTGAGCACAGCTTTC-ATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg taatgaaggccactcttacttctgtgatcacccttttcctctctccctagCTCACCAAACTGAGCACAGCCTTCCATCTGGAAGGAACCCTTTGGTCTGGTGCTTATCATTGCACCATGGAACTATCCTGTGAACCTCATGATCATACCCTTGGTGGGGGCTATTGCTACAggtaagaggggttccaagttcactagcctgatctatctctatcttcctaag Alignment from Spaln_aa2Genome CTCACCAAGCTGAGCACAGCTTTC-ATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG taatgaaggccactcttacttctgtgatcacccttttcctctctccctagCTCACCAAACTGAGCACAGCCTTCcATCTGGAAGGAACCCTTTGGTCTGGTGCTTATCATTGCACCATGGAACTATCCTGTGAACCTCATGATCATACCCTTGGTGGGGGCTATTGCTACAGgtaagaggggttccaagttcactagcctgatctatctctatcttcctaag Alignment from Spaln_nt2Genome CTCACCAAGCTGAGCACAG-CTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG taatgaaggccactcttacttctgtgatcacccttttcctctctccctagCTCACCAAACTGAGCACAGCCTTCCATCTGGAAGGAACCCTTTGGTCTGGTGCTTATCATTGCACCATGGAACTATCCTGTGAACCTCATGATCATACCCTTGGTGGGGGCTATTGCTACAGgtaagaggggttccaagttcactagcctgatctatctctatcttcctaag Alignment from Pairagon CTCACCAAGCTGAGCACAG-CTTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG taatgaaggccactcttacttctgtgatcacccttttcctctctccctagCTCACCAAACTGAGCACAGCCTTCCATCTGGAAGGAACCCTTTGGTCTGGTGCTTATCATTGCACCATGGAACTATCCTGTGAACCTCATGATCATACCCTTGGTGGGGGCTATTGCTACAGgtaagaggggttccaagttcactagcctgatctatctctatcttcctaag Alignment from Exonerate_protein2genome CTCACCAAGCTGAGCACAGCTTTC-ATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG taatgaaggccactcttacttctgtgatcacccttttcctctctccctagCTCACCAAACTGAGCACAGCCTTCCATCTGGAAGGAACCCTTTGGTCTGGTGCTTATCATTGCACCATGGAACTATCCTGTGAACCTCATGATCATACCCTTGGTGGGGGCTATTGCTACAGgtaagaggggttccaagttcactagcctgatctatctctatcttcctaag Alignment from Exonerate_coding2genome CTCACCAAGCTGAGCACAGCTTTC-ATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG taatgaaggccactcttacttctgtgatcacccttttcctctctccctagCTCACCAAACTGAGCACAGCCTTCCATCTGGAAGGAACCCTTTGGTCTGGTGCTTATCATTGCACCATGGAACTATCCTGTGAACCTCATGATCATACCCTTGGTGGGGGCTATTGCTACAGgtaagaggggttccaagttcactagcctgatctatctctatcttcctaag Alignment from GeneWise CTCACCAAGCTGAGCACAGCTTTCATC-CGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG taatgaaggccactcttacttctgtgatcacccttttcctctctccctagCTCACCAAACTGAGCACAGCCTTCCATCTGGAAGGAACCCTTTGGTCTGGTGCTTATCATTGCACCATGGAACTATCCTGTGAACCTCATGATCATACCCTTGGTGGGGGCTATTGCTACAGgtaagaggggttccaagttcactagcctgatctatctctatcttcctaag #### 1700055N04Rik_ID227_5 --> 2 - 0 Original Alignment gaAACTGTGTGGTGCTGAAG-CCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagcgtccaatcatcaatctgagcatcttgctttctccacaggaAACTGTGTGGTGTTAAAGCCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCCACCTCAGTATCTAGATCAGgtgagggatatgatgccttgtgagggtggagcttgattttagcttaaaat Alignment from CESAR gaAACTGTGTGGTGCTGAAG-CCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagcgtccaatcatcaatctgagcatcttgctttctccacaggaAACTGTGTGGTGTTAAAGCCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCCACCTCAGTATCTAGATCAGgtgagggatatgatgccttgtgagggtggagcttgattttagcttaaaat Alignment from Spaln_aa2Genome GAAACTGTGTGGTGCTGAAG-CCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagcgtccaatcatcaatctgagcatcttgctttctccacagGAAACTGTGTGGTGTTAAAGcCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCCACCTCAGTATCTAGATCAGgtgagggatatgatgccttgtgagggtggagcttgattttagcttaaaat Alignment from Spaln_nt2Genome GAAACTGTGTGGTGCTGAAGCC-ATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagcgtccaatcatcaatctgagcatcttgctttctccacagGAAACTGTGTGGTGTTAAAGCCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCCACCTCAGTATCTAGATCAGgtgagggatatgatgccttgtgagggtggagcttgattttagcttaaaat Alignment from Pairagon GAAACTGTGTGGTGCTGAAG-CCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagcgtccaatcatcaatctgagcatcttgctttctccacagGAAACTGTGTGGTGTTAAAGCCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCCACCTCAGTATCTAGATCAGgtgagggatatgatgccttgtgagggtggagcttgattttagcttaaaat Alignment from Exonerate_protein2genome GAAACTGTGTGGTGCTGAAG-CCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagcgtccaatcatcaatctgagcatcttgctttctccacagGAAACTGTGTGGTGTTAAAGCCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCCACCTCAGTATCTAGATCAGgtgagggatatgatgccttgtgagggtggagcttgattttagcttaaaat Alignment from Exonerate_coding2genome GAAACTGTGTGGTGCTGAAG-CCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagcgtccaatcatcaatctgagcatcttgctttctccacagGAAACTGTGTGGTGTTAAAGCCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCCACCTCAGTATCTAGATCAGgtgagggatatgatgccttgtgagggtggagcttgattttagcttaaaat Alignment from GeneWise CTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagcgtccaatcatcaatctgagcatcttgctttctccacaggaaactgtgtggtgttaaagC---------------CCATCAGAAATTAGCAGGAACACAGAGAAGGTGCTGGCAGAGCTTCCACCTCAGTATCTAGATCAGgtgagggatatgatgccttgtgagggtggagcttgattttagcttaaaat #### 1700123I01Rik_ID1493_5 --> 2 - 0 Original Alignment ggAAACCAGCAGATGAT-ATTCCTCTTGAGTTG acaggtaatacagtcttgccccatcatcactctctttccatgaaacctaggtAAACCTGCAGATGATCATTCCACTTGAGTTGgtaatatttaatggtttcttttacgtctccatctagattaatcaagccac Alignment from CESAR ggAAACCAGCAGATGAT-ATTCCTCTTGAGTTG acaggtaatacagtcttgccccatcatcactctctttccatgaaacctaggtAAACCTGCAGATGATCATTCCACTTGAGTTGgtaatatttaatggtttcttttacgtctccatctagattaatcaagccac Alignment from Spaln_aa2Genome GGAAACCAGCAGATGAT-ATTCCTCTTGAGTTG acaggtaatacagtcttgccccatcatcactctctttccatgaaacctagGTAAACCTGCAGATGATcATTCCACTTGAGTTGgtaatatttaatggtttcttttacgtctccatctagattaatcaagccac Alignment from Spaln_nt2Genome GGAAACCAGCAGATGAT-ATTCCTCTTGAGTTG acaggtaatacagtcttgccccatcatcactctctttccatgaaacctagGTAAACCTGCAGATGATCATTCCACTTGAGTTGgtaatatttaatggtttcttttacgtctccatctagattaatcaagccac Alignment from Pairagon GGAAACCAGCAGATGAT-ATTCCTCTTGAGTTG acaggtaatacagtcttgccccatcatcactctctttccatgaaacctagGTAAACCTGCAGATGATCATTCCACTTGAGTTGgtaatatttaatggtttcttttacgtctccatctagattaatcaagccac Alignment from Exonerate_protein2genome GGAAACCAGCAGATGAT-ATTCCTCTTGAGTTG acaggtaatacagtcttgccccatcatcactctctttccatgaaacctagGTAAACCTGCAGATGATCATTCCACTTGAGTTGgtaatatttaatggtttcttttacgtctccatctagattaatcaagccac Alignment from Exonerate_coding2genome acaggtaatacagtcttgccccatcatcactctctttccatgaaacctaggtaaacctgcagatgatcattccacttgagttggtaatatttaatggtttcttttacgtctccatctagattaatcaagccac Alignment from GeneWise acaggtaatacagtcttgccccatcatcactctctttccatgaaacctaggtaaacctgcagatgatcattccacttgagttggtaatatttaatggtttcttttacgtctccatctagattaatcaagccac #### 1810009A15Rik_ID2453_2 --> 0 - 2 Original Alignment GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCAC-CACCTCAAGAAGCGGgc aggtgggaagcctaggccttacatggatttttggccctgttgttttgtagGAGCTAAAAAAGAAGTTGTCTAAGCGCCGCAGGGTATTGAGTAAGGATTGGCAGAGGAAACGCCAGGTGGTTGGGGCTGTGATAGATGAAGGCTTGACTATGAAGCACCCACCTCAAGAAGCGGgcgtgaggacaaatccacttcttaccagatatagtgaatctttagtttactg Alignment from CESAR GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCAC-CACCTCAAGAAGCGGgc aggtgggaagcctaggccttacatggatttttggccctgttgttttgtagGAGCTAAAAAAGAAGTTGTCTAAGCGCCGCAGGGTATTGAGTAAGGATTGGCAGAGGAAACGCCAGGTGGTTGGGGCTGTGATAGATGAAGGCTTGACTATGAAGCACCCACCTCAAGAAGCGGgcgtgaggacaaatccacttcttaccagatatagtgaatctttagtttactg Alignment from Spaln_aa2Genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCAC-CACCTCAAGAAGCGGGC aggtgggaagcctaggccttacatggatttttggccctgttgttttgtagGAGCTAAAAAAGAAGTTGTCTAAGCGCCGCAGGGTATTGAGTAAGGATTGGCAGAGGAAACGCCAGGTGGTTGGGGCTGTGATAGATGAAGGCTTGACTATGAAGCACcCACCTCAAGAAGCGGGCgtgaggacaaatccacttcttaccagatatagtgaatctttagtttactg Alignment from Spaln_nt2Genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCAC-CACCTCAAGAAGCGGGC aggtgggaagcctaggccttacatggatttttggccctgttgttttgtagGAGCTAAAAAAGAAGTTGTCTAAGCGCCGCAGGGTATTGAGTAAGGATTGGCAGAGGAAACGCCAGGTGGTTGGGGCTGTGATAGATGAAGGCTTGACTATGAAGCACCCACCTCAAGAAGCGGGCgtgaggacaaatccacttcttaccagatatagtgaatctttagtttactg Alignment from Pairagon GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCA-CCACCTCAAGAAGCGGGC aggtgggaagcctaggccttacatggatttttggccctgttgttttgtagGAGCTAAAAAAGAAGTTGTCTAAGCGCCGCAGGGTATTGAGTAAGGATTGGCAGAGGAAACGCCAGGTGGTTGGGGCTGTGATAGATGAAGGCTTGACTATGAAGCACCCACCTCAAGAAGCGGGCgtgaggacaaatccacttcttaccagatatagtgaatctttagtttactg Alignment from Exonerate_protein2genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCAC-CACCTCAAGAAGCGGGC aggtgggaagcctaggccttacatggatttttggccctgttgttttgtagGAGCTAAAAAAGAAGTTGTCTAAGCGCCGCAGGGTATTGAGTAAGGATTGGCAGAGGAAACGCCAGGTGGTTGGGGCTGTGATAGATGAAGGCTTGACTATGAAGCACCCACCTCAAGAAGCGGGCgtgaggacaaatccacttcttaccagatatagtgaatctttagtttactg Alignment from Exonerate_coding2genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCAC-CACCTCAAGAAGCGGGC aggtgggaagcctaggccttacatggatttttggccctgttgttttgtagGAGCTAAAAAAGAAGTTGTCTAAGCGCCGCAGGGTATTGAGTAAGGATTGGCAGAGGAAACGCCAGGTGGTTGGGGCTGTGATAGATGAAGGCTTGACTATGAAGCACCCACCTCAAGAAGCGGGCgtgaggacaaatccacttcttaccagatatagtgaatctttagtttactg Alignment from GeneWise GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCAC-CACCTCAAGAAGCGGGC aggtgggaagcctaggccttacatggatttttggccctgttgttttgtagGAGCTAAAAAAGAAGTTGTCTAAGCGCCGCAGGGTATTGAGTAAGGATTGGCAGAGGAAACGCCAGGTGGTTGGGGCTGTGATAGATGAAGGCTTGACTATGAAGCACCCACCTCAAGAAGCGGGCgtgaggacaaatccacttcttaccagatatagtgaatctttagtttactg #### Acsl5_ID11602_7 --> 0 - 0 Original Alignment AATATAGGCAAA-GAGAACTTCAAAAAACCAGTG ctgaccatctttaatgactctctttggtttatttcctttattttggatagAATATAGGCAAACGAGAACTTCAAGAAACCAGTGgtgagaagtctgcctgctaattttgagttgttttagaccctctgtggttc Alignment from CESAR AATATAGGCAAA-GAGAACTTCAAAAAACCAGTG ctgaccatctttaatgactctctttggtttatttcctttattttggatagAATATAGGCAAACGAGAACTTCAAGAAACCAGTGgtgagaagtctgcctgctaattttgagttgttttagaccctctgtggttc Alignment from Spaln_aa2Genome GGCAAAGAGAACTTCAAAAAACCAGTG ctgaccatctttaatgactctctttggtttatttcctttattttggatagaatatagGCAAACGAGAACTTCAAGAAACCAGTGgtgagaagtctgcctgctaattttgagttgttttagaccctctgtggttc Alignment from Spaln_nt2Genome AATATAGGCAAA-GAGAACTTCAAAAAACCAGTG ctgaccatctttaatgactctctttggtttatttcctttattttggatagAATATAGGCAAACGAGAACTTCAAGAAACCAGTGgtgagaagtctgcctgctaattttgagttgttttagaccctctgtggttc Alignment from Pairagon AATATAGGCAAA-GAGAACTTCAAAAAACCAGTG ctgaccatctttaatgactctctttggtttatttcctttattttggatagAATATAGGCAAACGAGAACTTCAAGAAACCAGTGgtgagaagtctgcctgctaattttgagttgttttagaccctctgtggttc Alignment from Exonerate_protein2genome AATATAGGCAAA-GAGAACTTCAAAAAACCAGTG ctgaccatctttaatgactctctttggtttatttcctttattttggatagAATATAGGCAAACGAGAACTTCAAGAAACCAGTGgtgagaagtctgcctgctaattttgagttgttttagaccctctgtggttc Alignment from Exonerate_coding2genome ctgaccatctttaatgactctctttggtttatttcctttattttggatagaatataggcaaacgagaacttcaagaaaccagtggtgagaagtctgcctgctaattttgagttgttttagaccctctgtggttc Alignment from GeneWise ctgaccatctttaatgactctctttggtttatttcctttattttggatagaatataggcaaacgagaacttcaagaaaccagtggtgagaagtctgcctgctaattttgagttgttttagaccctctgtggttc #### Actn3_ID691_19 --> 0 - 0 Original Alignment AAGCGGAATGGG-ATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gagtggagacttcacctgatagacattactgcctccctccctctccacagAAGCGGAATGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtgagtgccttgcccagttcaaacacaccatcagatcagatctcctcctt Alignment from CESAR AAGCGGAATGGG-ATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG aagcggagacttcacctgatagacattactgcctccctccctctccacagAAGCGGAATGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtgagtgccttgcccagttcaaacacaccatcagatcagatctcctcctt Alignment from Spaln_aa2Genome AAGCGGAAT-GGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gagtggagacttcacctgatagacattactgcctccctccctctccacagAAGCGGAATgGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtgagtgccttgcccagttcaaacacaccatcagatcagatctcctcctt Alignment from Spaln_nt2Genome AAGCGGAATGGG-ATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gagtggagacttcacctgatagacattactgcctccctccctctccacagAAGCGGAATGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtgagtgccttgcccagttcaaacacaccatcagatcagatctcctcctt Alignment from Pairagon AAGCGGAATGGG-ATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gagtggagacttcacctgatagacattactgcctccctccctctccacagAAGCGGAATGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtgagtgccttgcccagttcaaacacaccatcagatcagatctcctcctt Alignment from Exonerate_protein2genome AAGCGGAAT-GGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gagtggagacttcacctgatagacattactgcctccctccctctccacagAAGCGGAATGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtgagtgccttgcccagttcaaacacaccatcagatcagatctcctcctt Alignment from Exonerate_coding2genome AAGCGGAAT-GGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG gagtggagacttcacctgatagacattactgcctccctccctctccacagAAGCGGAATGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtgagtgccttgcccagttcaaacacaccatcagatcagatctcctcctt Alignment from GeneWise G--CGGAAT---------------------------------------------------GGGATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG GAGTGGAGACTTCACCTGATAGACATTACTGCCTCCCTCCCTCTCCACAGAAGCGGAATGGGCATGATGGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtgagtgccttgcccagttcaaacacaccatcagatcagatctcctcctt #### Actn3_ID695_15 --> 0 - 0 Original Alignment AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATCCAG-AAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatggggatactggtttctcattctcctggttatagAGCCTACTAACAGCACATGAACAGTTCAAAGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCCAGGCATCCAAGGAGAGATTCCACAAGATTTGCCAAACATACGGGCTGCGGCCCAAGTCTGGTAACCCCTACATTACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaaggaaccctgtgtgttccttacttattcttgcacttttaatacaatg Alignment from CESAR AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATC-CAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatggggatactggtttctcattctcctggttatagAGCCTACTAACAGCACATGAACAGTTCAAAGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCCAGGCATCCAAGGAGAGATTCCACAAGATTTGCCAAACATACGGGCTGCGGCCCAAGTCTGGTAACCCCTACATTACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaaggaaccctgtgtgttccttacttattcttgcacttttaatacaatg Alignment from Spaln_aa2Genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATC-CAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatggggatactggtttctcattctcctggttatagAGCCTACTAACAGCACATGAACAGTTCAAAGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCCAGGCATCCAAGGAGAGATTcCACAAGATTTGCCAAACATACGGGCTGCGGCCCAAGTCTGGTAACCCCTACATTACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaaggaaccctgtgtgttccttacttattcttgcacttttaatacaatg Alignment from Spaln_nt2Genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGA-TCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatggggatactggtttctcattctcctggttatagAGCCTACTAACAGCACATGAACAGTTCAAAGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCCAGGCATCCAAGGAGAGATTCCACAAGATTTGCCAAACATACGGGCTGCGGCCCAAGTCTGGTAACCCCTACATTACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaaggaaccctgtgtgttccttacttattcttgcacttttaatacaatg Alignment from Pairagon AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGA-TCCAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatggggatactggtttctcattctcctggttatagAGCCTACTAACAGCACATGAACAGTTCAAAGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCCAGGCATCCAAGGAGAGATTCCACAAGATTTGCCAAACATACGGGCTGCGGCCCAAGTCTGGTAACCCCTACATTACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaaggaaccctgtgtgttccttacttattcttgcacttttaatacaatg Alignment from Exonerate_protein2genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATC-CAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatggggatactggtttctcattctcctggttatagAGCCTACTAACAGCACATGAACAGTTCAAAGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCCAGGCATCCAAGGAGAGATTCCACAAGATTTGCCAAACATACGGGCTGCGGCCCAAGTCTGGTAACCCCTACATTACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaaggaaccctgtgtgttccttacttattcttgcacttttaatacaatg Alignment from Exonerate_coding2genome AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATC-CAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatggggatactggtttctcattctcctggttatagAGCCTACTAACAGCACATGAACAGTTCAAAGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCCAGGCATCCAAGGAGAGATTCCACAAGATTTGCCAAACATACGGGCTGCGGCCCAAGTCTGGTAACCCCTACATTACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaaggaaccctgtgtgttccttacttattcttgcacttttaatacaatg Alignment from GeneWise AGCCTGCTAACAGCACACGAACAGTTCAAGGCAACGTTGCCCGAGGCTGATCGAGAGCGAGGCGCCATCCTGGGCATCCAAGGAGAGATC-CAGAAGATTTGCCAAACATACGGACTACGGCCAAAGTCCGGCAACCCCTACATCACCCTCAGTTCGCAGGACATCAACAATAAGTGGGATACA catacatgggtgcaaatggggatactggtttctcattctcctggttatagAGCCTACTAACAGCACATGAACAGTTCAAAGCAACATTACCTGAAGCAGATCGAGAGCGAGGTGCCATCCCAGGCATCCAAGGAGAGATTCCACAAGATTTGCCAAACATACGGGCTGCGGCCCAAGTCTGGTAACCCCTACATTACCCTCAGTTCAAGGGACATCAACAATAAGTGGGATACAgtaaggaaccctgtgtgttccttacttattcttgcacttttaatacaatg #### Actn3_ID696_14 --> 0 - 0 Original Alignment AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGG-CTC---GTGCACTCTGTGGAGGAGACCCAG aagaccagcagtctgagaagaatctggacctactcgtgtcaaacttgtagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGCTTGCTCGCAGGGCAGCTTCTTTCAATAACTGGTTTGATGGGGCTATTGAGGACCTGCATGATGTGTGGCCTGGTGGTCCACTCTGTGGAGGAGACACAGgtgagtggacacattaggcagggagtctttggatgcactttatgtggtgt Alignment from CESAR AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGG-CTCGTG---CACTCTGTGGAGGAGACCCAG aagaccagcagtctgagaagaatctggacctactcgtgtcaaacttgtagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGCTTGCTCGCAGGGCAGCTTCTTTCAATAACTGGTTTGATGGGGCTATTGAGGACCTGCATGATGTGTGGCCTGGTGGTCCACTCTGTGGAGGAGACACAGgtgagtggacacattaggcagggagtctttggatgcactttatgtggtgt Alignment from Spaln_aa2Genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGG----CTCGTGCACTCTGTGGAGGAGACCCAG aagaccagcagtctgagaagaatctggacctactcgtgtcaaacttgtagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGCTTGCTCGCAGGGCAGCTTCTTTCAATAACTGGTTTGATGGGGCTATTGAGGACCTGCATGATGTGTGGCCTgGTGGTCCACTCTGTGGAGGAGACACAGgtgagtggacacattaggcagggagtctttggatgcactttatgtggtgt Alignment from Spaln_nt2Genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGC----TCGTGCACTCTGTGGAGGAGACCCAG aagaccagcagtctgagaagaatctggacctactcgtgtcaaacttgtagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGCTTGCTCGCAGGGCAGCTTCTTTCAATAACTGGTTTGATGGGGCTATTGAGGACCTGCATGATGTGTGGCCTGGTGGTCCACTCTGTGGAGGAGACACAGgtgagtggacacattaggcagggagtctttggatgcactttatgtggtgt Alignment from Pairagon AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGC----TCGTGCACTCTGTGGAGGAGACCCAG aagaccagcagtctgagaagaatctggacctactcgtgtcaaacttgtagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGCTTGCTCGCAGGGCAGCTTCTTTCAATAACTGGTTTGATGGGGCTATTGAGGACCTGCATGATGTGTGGCCTGGTGGTCCACTCTGTGGAGGAGACACAGgtgagtggacacattaggcagggagtctttggatgcactttatgtggtgt Alignment from Exonerate_protein2genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGG----CTCGTGCACTCTGTGGAGGAGACCCAG aagaccagcagtctgagaagaatctggacctactcgtgtcaaacttgtagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGCTTGCTCGCAGGGCAGCTTCTTTCAATAACTGGTTTGATGGGGCTATTGAGGACCTGCATGATGTGTGGCCTGGTGGTCCACTCTGTGGAGGAGACACAGgtgagtggacacattaggcagggagtctttggatgcactttatgtggtgt Alignment from Exonerate_coding2genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGG----CTCGTGCACTCTGTGGAGGAGACCCAG aagaccagcagtctgagaagaatctggacctactcgtgtcaaacttgtagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGCTTGCTCGCAGGGCAGCTTCTTTCAATAACTGGTTTGATGGGGCTATTGAGGACCTGCATGATGTGTGGCCTGGTGGTCCACTCTGTGGAGGAGACACAGgtgagtggacacattaggcagggagtctttggatgcactttatgtggtgt Alignment from GeneWise AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGG------CTCGTGCACTCTGTGGAGGAGACCCAG aagaccagcagtctgagaagaatctggacctactcgtgtcaaacttgtagAGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGCTTGCTCGCAGGGCAGCTTCTTTCAATAACTGGTTTGATGGGGCTATTGAGGACCTGCATGATGTGTGGCCTG--GTGGTCCACTCTGTGGAGGAGACACAGgtgagtggacacattaggcagggagtctttggatgcactttatgtggtgt #### Actn3_ID705_5 --> 2 - 2 Original Alignment agACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTC-AACGTACAGAACTTCCATACCag tgaaaagtgcatgagccaggccagctcactgccgcctctgacacccccagagACTGCATCCAAACAGGGCTTGTTCCTCTGGTGTCAGCGGAAAATAGCTCCATACCGCAATGTCCAATGTACAAAACTTCCATACTaggtaagtctggtggcctccagtgaatgcaagtaaggtgtttgctggcaact Alignment from CESAR agACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTC-AACGTACAGAACTTCCATACCag tgaaaagtgcatgagccaggccagctcactgccgcctctgacacccccagagACTGCATCCAAACAGGGCTTGTTCCTCTGGTGTCAGCGGAAAATAGCTCCATACCGCAATGTCCAATGTACAAAACTTCCATACTaggtaagtctggtggcctccagtgaatgcaagtaaggtgtttgctggcaact Alignment from Spaln_aa2Genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTC-AACGTACAGAACTTCCATACCAG tgaaaagtgcatgagccaggccagctcactgccgcctctgacacccccagAGACTGCATCCAAACAGGGCTTGTTCCTCTGGTGTCAGCGGAAAATAGCTCCATACCGCAATGTCcAATGTACAAAACTTCCATACTAGgtaagtctggtggcctccagtgaatgcaagtaaggtgtttgctggcaact Alignment from Spaln_nt2Genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTC-AACGTACAGAACTTCCATACCAG tgaaaagtgcatgagccaggccagctcactgccgcctctgacacccccagAGACTGCATCCAAACAGGGCTTGTTCCTCTGGTGTCAGCGGAAAATAGCTCCATACCGCAATGTCCAATGTACAAAACTTCCATACTAGgtaagtctggtggcctccagtgaatgcaagtaaggtgtttgctggcaact Alignment from Pairagon AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGT-CAACGTACAGAACTTCCATACCAG tgaaaagtgcatgagccaggccagctcactgccgcctctgacacccccagAGACTGCATCCAAACAGGGCTTGTTCCTCTGGTGTCAGCGGAAAATAGCTCCATACCGCAATGTCCAATGTACAAAACTTCCATACTAGgtaagtctggtggcctccagtgaatgcaagtaaggtgtttgctggcaact Alignment from Exonerate_protein2genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTC-AACGTACAGAACTTCCATACCAG tgaaaagtgcatgagccaggccagctcactgccgcctctgacacccccagAGACTGCATCCAAACAGGGCTTGTTCCTCTGGTGTCAGCGGAAAATAGCTCCATACCGCAATGTCCAATGTACAAAACTTCCATACTAGgtaagtctggtggcctccagtgaatgcaagtaaggtgtttgctggcaact Alignment from Exonerate_coding2genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAATGTC-AACGTACAGAACTTCCATACCAG tgaaaagtgcatgagccaggccagctcactgccgcctctgacacccccagAGACTGCATCCAAACAGGGCTTGTTCCTCTGGTGTCAGCGGAAAATAGCTCCATACCGCAATGTCCAATGTACAAAACTTCCATACTAGgtaagtctggtggcctccagtgaatgcaagtaaggtgtttgctggcaact Alignment from GeneWise AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGGTGTCAGCGGAAAACAGCACCGTACCGCAAT-GTCAACGTACAGAACTTCCATACCAG tgaaaagtgcatgagccaggccagctcactgccgcctctgacacccccagAGACTGCATCCAAACAGGGCTTGTTCCTCTGGTGTCAGCGGAAAATAGCTCCATACCGCAATGTCCAATGTACAAAACTTCCATACTAGgtaagtctggtggcctccagtgaatgcaagtaaggtgtttgctggcaact #### Actn3_ID706_4 --> 2 - 1 Original Alignment aaATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCC-ATTCAGGACATCTCTGTAGAAg gccacaatgatgctggaccaaggtctgggatttcttctttgctccctcagaaATAGTTGACGGGAACCTGAAAATGACCCTTGGCATGATCTGGACAATCATCCTCCGCTTTGCCCATTCAGGACATCTCTGTAGAAggtaagctgatgaaaagtgcatgagccaggccagctcaaaaaaaattgatc Alignment from CESAR aaATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCC-ATTCAGGACATCTCTGTAGAAg gccacaatgatgctggaccaaggtctgggatttcttctttgctccctcagaaATAGTTGACGGGAACCTGAAAATGACCCTTGGCATGATCTGGACAATCATCCTCCGCTTTGCCCATTCAGGACATCTCTGTAGAAggtaagctgatgaaaagtgcatgagccaggccagctcactgccgcctctga Alignment from Spaln_aa2Genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCC-ATTCAGGACATCTCTGTAGAAG gccacaatgatgctggaccaaggtctgggatttcttctttgctccctcagAAATAGTTGACGGGAACCTGAAAATGACCCTTGGCATGATCTGGACAATCATCCTCCGCTTTGCCcATTCAGGACATCTCTGTAGAAGgtaagctgatgaaaagtgcatgagccaggccagctcaaaaaaaattgatc Alignment from Spaln_nt2Genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGC-CATTCAGGACATCTCTGTAGAAG gccacaatgatgctggaccaaggtctgggatttcttctttgctccctcagAAATAGTTGACGGGAACCTGAAAATGACCCTTGGCATGATCTGGACAATCATCCTCCGCTTTGCCCATTCAGGACATCTCTGTAGAAGgtaagctgatgaaaagtgcatgagccaggccagctcaaaaaaaattgatc Alignment from Pairagon AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTG-CCATTCAGGACATCTCTGTAGAAG gccacaatgatgctggaccaaggtctgggatttcttctttgctccctcagAAATAGTTGACGGGAACCTGAAAATGACCCTTGGCATGATCTGGACAATCATCCTCCGCTTTGCCCATTCAGGACATCTCTGTAGAAGgtaagctgatgaaaagtgcatgagccaggccagctcaaaaaaaattgatc Alignment from Exonerate_protein2genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCC-ATTCAGGACATCTCTGTAGAAG gccacaatgatgctggaccaaggtctgggatttcttctttgctccctcagAAATAGTTGACGGGAACCTGAAAATGACCCTTGGCATGATCTGGACAATCATCCTCCGCTTTGCCCATTCAGGACATCTCTGTAGAAGgtaagctgatgaaaagtgcatgagccaggccagctcaaaaaaaattgatc Alignment from Exonerate_coding2genome AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCC-ATTCAGGACATCTCTGTAGAAG gccacaatgatgctggaccaaggtctgggatttcttctttgctccctcagAAATAGTTGACGGGAACCTGAAAATGACCCTTGGCATGATCTGGACAATCATCCTCCGCTTTGCCCATTCAGGACATCTCTGTAGAAGgtaagctgatgaaaagtgcatgagccaggccagctcaaaaaaaattgatc Alignment from GeneWise AAATTGTTGACGGGAACCTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTT-GCCATTCAGGACATCTCTGTAGAAG gccacaatgatgctggaccaaggtctgggatttcttctttgctccctcagAAATAGTTGACGGGAACCTGAAAATGACCCTTGGCATGATCTGGACAATCATCCTCCGCTTTGCCCATTCAGGACATCTCTGTAGAAGgtaagctgatgaaaagtgcatgagccaggccagctcaaaaaaaattgatc #### Actn3_ID707_3 --> 2 - 1 Original Alignment gaGAGAGGCTGCCTAGG-CCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAg tacacttcaactcatgaccttcaacgtttctattctccttcaaattccaggtGCAAGGCTGCCTAGGCCCTGACAAAGGCAAGATGTGCTTTCACAAAATTGCCAATGTCAATAATGCCCTAGACTTCATAGCTAGCAAAGGAGTGAAGTTGGTTGCCATTAGTGCTGAAggtaaggggggggataaaagacatagacagtggagaggcaagatgttactt Alignment from CESAR gaGAGAGGCTGCCTAGGCCC-GACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAg tacacttcaactcatgaccttcaacgtttctattctccttcaaattccaggtGCAAGGCTGCCTAGGCCCTGACAAAGGCAAGATGTGCTTTCACAAAATTGCCAATGTCAATAATGCCCTAGACTTCATAGCTAGCAAAGGAGTGAAGTTGGTTGCCATTAGTGCTGAAggtaaggggggggataaaagacatagacagtggagaggcaagatgttactt Alignment from Spaln_aa2Genome GAGAGAGGCTGCCTAGG-CCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tacacttcaactcatgaccttcaacgtttctattctccttcaaattccagGTGCAAGGCTGCCTAGGcCCTGACAAAGGCAAGATGTGCTTTCACAAAATTGCCAATGTCAATAATGCCCTAGACTTCATAGCTAGCAAAGGAGTGAAGTTGGTTGCCATTAGTGCTGAAGgtaaggggggggataaaagacatagacagtggagaggcaagatgttactt Alignment from Spaln_nt2Genome GAGAGAGGCTGCCTAGGCCC-GACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tacacttcaactcatgaccttcaacgtttctattctccttcaaattccagGTGCAAGGCTGCCTAGGCCCTGACAAAGGCAAGATGTGCTTTCACAAAATTGCCAATGTCAATAATGCCCTAGACTTCATAGCTAGCAAAGGAGTGAAGTTGGTTGCCATTAGTGCTGAAGgtaaggggggggataaaagacatagacagtggagaggcaagatgttactt Alignment from Pairagon GAGAGAGGCTGCCTAGGCCC-GACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tacacttcaactcatgaccttcaacgtttctattctccttcaaattccagGTGCAAGGCTGCCTAGGCCCTGACAAAGGCAAGATGTGCTTTCACAAAATTGCCAATGTCAATAATGCCCTAGACTTCATAGCTAGCAAAGGAGTGAAGTTGGTTGCCATTAGTGCTGAAGgtaaggggggggataaaagacatagacagtggagaggcaagatgttactt Alignment from Exonerate_protein2genome GAGAGAGGCTGCCTAGG-CCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tacacttcaactcatgaccttcaacgtttctattctccttcaaattccagGTGCAAGGCTGCCTAGGCCCTGACAAAGGCAAGATGTGCTTTCACAAAATTGCCAATGTCAATAATGCCCTAGACTTCATAGCTAGCAAAGGAGTGAAGTTGGTTGCCATTAGTGCTGAAGgtaaggggggggataaaagacatagacagtggagaggcaagatgttactt Alignment from Exonerate_coding2genome GAGAGAGGCTGCCTAGG-CCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tacacttcaactcatgaccttcaacgtttctattctccttcaaattccagGTGCAAGGCTGCCTAGGCCCTGACAAAGGCAAGATGTGCTTTCACAAAATTGCCAATGTCAATAATGCCCTAGACTTCATAGCTAGCAAAGGAGTGAAGTTGGTTGCCATTAGTGCTGAAGgtaaggggggggataaaagacatagacagtggagaggcaagatgttactt Alignment from GeneWise GAGAGAGGCTGCCTAGGCCCGACAAAGGCAAGATGCGCTTCCACAAAATCGCCAATGTCAATAAAGCCCTAGACTTCATTGCCAGCAAAGGAGTTAAGCTAGTGTCCATCGGTGCTGAAG tacacttcaactcatgaccttcaacgtttctattctccttcaaattccaggtgcaaggctgcctagGC---------------CCTGACAAAGGCAAGATGTGCTTTCACAAAATTGCCAATGTCAATAATGCCCTAGACTTCATAGCTAGCAAAGGAGTGAAGTTGGTTGCCATTAGTGCTGAAGgtaaggggggggataaaagacatagacagtggagaggcaagatgttactt #### Actr1a_ID9870_10 --> 0 - 2 Original Alignment ATATCTGCACCCCAG-GAGAGACTGTATTCCACATGGATTgg gatattagaactccaggagagagtgtaccagctaggctttctgttcttagATATCTGCCCCCCAGCGAGCAACTGTATTCCACATGGATCgggtaagcaacccttctaatggaataggatgggaagtaaaagcttttgatca Alignment from CESAR ATATCTGCACCCCAG-GAGAGACTGTATTCCACATGGATTgg gatattagaactccaggagagagtgtaccagctaggctttctgttcttagATATCTGCCCCCCAGCGAGCAACTGTATTCCACATGGATCgggtaagcaacccttctaatggaataggatgggaagtaaaagcttttgatca Alignment from Spaln_aa2Genome GGAGAGACTGTATTCCACATGGATTGG gatattagaactccaggagagagtgtaccagctaggctttctgttcttagatatctgccccccagCGAGCAACTGTATTCCACATGGATCGGgtaagcaacccttctaatggaataggatgggaagtaaaagcttttgatca Alignment from Spaln_nt2Genome ATATCTGCACCCCAG-GAGAGACTGTATTCCACATGGATTGG gatattagaactccaggagagagtgtaccagctaggctttctgttcttagATATCTGCCCCCCAGCGAGCAACTGTATTCCACATGGATCGGgtaagcaacccttctaatggaataggatgggaagtaaaagcttttgatca Alignment from Pairagon ATATCTGCACCCCAG-GAGAGACTGTATTCCACATGGATTGG gatattagaactccaggagagagtgtaccagctaggctttctgttcttagATATCTGCCCCCCAGCGAGCAACTGTATTCCACATGGATCGGgtaagcaacccttctaatggaataggatgggaagtaaaagcttttgatca Alignment from Exonerate_protein2genome ATATCTGCACCCCAG-GAGAGACTGTATTCCACATGGATTGG gatattagaactccaggagagagtgtaccagctaggctttctgttcttagATATCTGCCCCCCAGCGAGCAACTGTATTCCACATGGATCGGgtaagcaacccttctaatggaataggatgggaagtaaaagcttttgatca Alignment from Exonerate_coding2genome ATATCTGCACCCCAG-GAGAGACTGTATTCCACATGGATTGG gatattagaactccaggagagagtgtaccagctaggctttctgttcttagATATCTGCCCCCCAGCGAGCAACTGTATTCCACATGGATCGGgtaagcaacccttctaatggaataggatgggaagtaaaagcttttgatca Alignment from GeneWise gatattagaactccaggagagagtgtaccagctaggctttctgttcttagatatctgccccccagcgagcaactgtattccacatggatcgggtaagcaacccttctaatggaataggatgggaagtaaaagcttttgatca #### Actr1a_ID9871_9 --> 2 - 0 Original Alignment gtTTTGGAGACAGGCTA-CTGAGTGAAGTGAAGAAACTAGCTCCAAAAGACGTGAAGATCAGG ttctttgctagtcatcgtccttgttattcctgaccctcattcttccgcaggtTTTGGAGACAAACTACCTGAGTGAAGTAAAGAAAGTTGCTCTGAAAGATGTGAAGATCAGGgtgagctggactggaggttggacttgttggttccacccacttgtctttgt Alignment from CESAR gtTTTGGAGACAGGCTA-CTGAGTGAAGTGAAGAAACTAGCTCCAAAAGACGTGAAGATCAGG ttctttgctagtcatcgtccttgttattcctgaccctcattcttccgcaggtTTTGGAGACAAACTACCTGAGTGAAGTAAAGAAAGTTGCTCTGAAAGATGTGAAGATCAGGgtgagctggactggaggttggacttgttggttccacccacttgtctttgt Alignment from Spaln_aa2Genome GTTTTGGAGACAGGCTA-CTGAGTGAAGTGAAGAAACTAGCTCCAAAAGACGTGAAGATCAGG ttctttgctagtcatcgtccttgttattcctgaccctcattcttccgcagGTTTTGGAGACAAACTAcCTGAGTGAAGTAAAGAAAGTTGCTCTGAAAGATGTGAAGATCAGGgtgagctggactggaggttggacttgttggttccacccacttgtctttgt Alignment from Spaln_nt2Genome GTTTTGGAGACAGGCTAC-TGAGTGAAGTGAAGAAACTAGCTCCAAAAGACGTGAAGATCAGG ttctttgctagtcatcgtccttgttattcctgaccctcattcttccgcagGTTTTGGAGACAAACTACCTGAGTGAAGTAAAGAAAGTTGCTCTGAAAGATGTGAAGATCAGGgtgagctggactggaggttggacttgttggttccacccacttgtctttgt Alignment from Pairagon GTTTTGGAGACAGGCTA-CTGAGTGAAGTGAAGAAACTAGCTCCAAAAGACGTGAAGATCAGG ttctttgctagtcatcgtccttgttattcctgaccctcattcttccgcagGTTTTGGAGACAAACTACCTGAGTGAAGTAAAGAAAGTTGCTCTGAAAGATGTGAAGATCAGGgtgagctggactggaggttggacttgttggttccacccacttgtctttgt Alignment from Exonerate_protein2genome GTTTTGGAGACAGGCTA-CTGAGTGAAGTGAAGAAACTAGCTCCAAAAGACGTGAAGATCAGG ttctttgctagtcatcgtccttgttattcctgaccctcattcttccgcagGTTTTGGAGACAAACTACCTGAGTGAAGTAAAGAAAGTTGCTCTGAAAGATGTGAAGATCAGGgtgagctggactggaggttggacttgttggttccacccacttgtctttgt Alignment from Exonerate_coding2genome GTTTTGGAGACAGGCTA-CTGAGTGAAGTGAAGAAACTAGCTCCAAAAGACGTGAAGATCAGG ttctttgctagtcatcgtccttgttattcctgaccctcattcttccgcagGTTTTGGAGACAAACTACCTGAGTGAAGTAAAGAAAGTTGCTCTGAAAGATGTGAAGATCAGGgtgagctggactggaggttggacttgttggttccacccacttgtctttgt Alignment from GeneWise ttctttgctagtcatcgtccttgttattcctgaccctcattcttccgcaggttttggagacaaactacctgagtgaagtaaagaaagttgctctgaaagatgtgaagatcagggtgagctggactggaggttggacttgttggttccacccacttgtctttgt #### Acy3_ID250_4 --> 2 - 1 Original Alignment gtCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAG-CTCTTCAACCAAg ttagctaaggctaggctgtttgcctgttactcaggtctctttgctcccaggcCTGGAGATGGGCCCACAGCCTCAAGGAGTGCTGTGGGCCGACCTGTTCTCGCAGATACGAGCTTTAGTGGCATCCATTCTTGACTTCATTGAGCCTCTTTAACCAAggtaagaccttttccagtggcctgtcaggaagatcaagctgaggagagggt Alignment from CESAR gtCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAG-CTCTTCAACCAAg ttagctaaggctaggctgtttgcctgttactcaggtctctttgctcccaggcCTGGAGATGGGCCCACAGCCTCAAGGAGTGCTGTGGGCCGACCTGTTCTCGCAGATACGAGCTTTAGTGGCATCCATTCTTGACTTCATTGAGCCTCTTTAACCAAggtaagaccttttccagtggcctgtcaggaagatcaagctgaggagagggt Alignment from Spaln_aa2Genome GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAG-CTCTTCAACCAAG ttagctaaggctaggctgtttgcctgttactcaggtctctttgctcccagGCCTGGAGATGGGCCCACAGCCTCAAGGAGTGCTGTGGGCCGACCTGTTCTCGCAGATACGAGCTTTAGTGGCATCCATTCTTGACTTCATTGAGcCTCTTTAACCAAGgtaagaccttttccagtggcctgtcaggaagatcaagctgaggagagggt Alignment from Spaln_nt2Genome GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAGC-TCTTCAACCAAG ttagctaaggctaggctgtttgcctgttactcaggtctctttgctcccagGCCTGGAGATGGGCCCACAGCCTCAAGGAGTGCTGTGGGCCGACCTGTTCTCGCAGATACGAGCTTTAGTGGCATCCATTCTTGACTTCATTGAGCCTCTTTAACCAAGgtaagaccttttccagtggcctgtcaggaagatcaagctgaggagagggt Alignment from Pairagon GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAG-CTCTTCAACCAAG ttagctaaggctaggctgtttgcctgttactcaggtctctttgctcccagGCCTGGAGATGGGCCCACAGCCTCAAGGAGTGCTGTGGGCCGACCTGTTCTCGCAGATACGAGCTTTAGTGGCATCCATTCTTGACTTCATTGAGCCTCTTTAACCAAGgtaagaccttttccagtggcctgtcaggaagatcaagctgaggagagggt Alignment from Exonerate_protein2genome GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAG-CTCTTCAACCAAG ttagctaaggctaggctgtttgcctgttactcaggtctctttgctcccagGCCTGGAGATGGGCCCACAGCCTCAAGGAGTGCTGTGGGCCGACCTGTTCTCGCAGATACGAGCTTTAGTGGCATCCATTCTTGACTTCATTGAGCCTCTTTAACCAAGgtaagaccttttccagtggcctgtcaggaagatcaagctgaggagagggt Alignment from Exonerate_coding2genome GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAG-CTCTTCAACCAAG ttagctaaggctaggctgtttgcctgttactcaggtctctttgctcccagGCCTGGAGATGGGCCCACAGCCTCAAGGAGTGCTGTGGGCCGACCTGTTCTCGCAGATACGAGCTTTAGTGGCATCCATTCTTGACTTCATTGAGCCTCTTTAACCAAGgtaagaccttttccagtggcctgtcaggaagatcaagctgaggagagggt Alignment from GeneWise GTCTGGAGATGGGCCCACAGCCTCAGGGCGTGCTGCGGGCCGACCTGTTCTCCCGGATGCGAGCTCTGGTGGCATCCATTCTGGACTTCATCGAG-CTCTTCAACCAAG ttagctaaggctaggctgtttgcctgttactcaggtctctttgctcccagGCCTGGAGATGGGCCCACAGCCTCAAGGAGTGCTGTGGGCCGACCTGTTCTCGCAGATACGAGCTTTAGTGGCATCCATTCTTGACTTCATTGAGCCTCTTTAACCAAGgtaagaccttttccagtggcctgtcaggaagatcaagctgaggagagggt #### Acy3_ID251_5 --> 2 - 0 Original Alignment gcATGGACTTACCCGCCTTTGAGATGGATATC-TACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgaggctctgagcttttctttcacaggcATGGACTTAGCAGCATTTGAGATGGATATCCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtgagtgttgtgggagccaggtaggtgtactgtgaacacccaactgaacc Alignment from CESAR gcATGGACTTACCCGCCTTTGAGATGGATATC-TACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgaggctctgagcttttctttcacaggcATGGACTTAGCAGCATTTGAGATGGATATCCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtgagtgttgtgggagccaggtaggtgtactgtgaacacccaactgaacc Alignment from Spaln_aa2Genome GCATGGACTTACCCGCCTTTGAGATGGATATC-TACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgaggctctgagcttttctttcacagGCATGGACTTAGCAGCATTTGAGATGGATATCcTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtgagtgttgtgggagccaggtaggtgtactgtgaacacccaactgaacc Alignment from Spaln_nt2Genome GCATGGACTTACCCGCCTTTGAGATGGATAT-CTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgaggctctgagcttttctttcacagGCATGGACTTAGCAGCATTTGAGATGGATATCCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtgagtgttgtgggagccaggtaggtgtactgtgaacacccaactgaacc Alignment from Pairagon GCATGGACTTACCCGCCTTTGAGATGGATAT-CTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgaggctctgagcttttctttcacagGCATGGACTTAGCAGCATTTGAGATGGATATCCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtgagtgttgtgggagccaggtaggtgtactgtgaacacccaactgaacc Alignment from Exonerate_protein2genome GCATGGACTTACCCGCCTTTGAGATGGATATC-TACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgaggctctgagcttttctttcacagGCATGGACTTAGCAGCATTTGAGATGGATATCCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtgagtgttgtgggagccaggtaggtgtactgtgaacacccaactgaacc Alignment from Exonerate_coding2genome GCATGGACTTACCCGCCTTTGAGATGGATATC-TACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgaggctctgagcttttctttcacagGCATGGACTTAGCAGCATTTGAGATGGATATCCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtgagtgttgtgggagccaggtaggtgtactgtgaacacccaactgaacc Alignment from GeneWise GATGGATATCTACAGGAACTTGGGCAGTGTGGACTTCCCACGCACTGCAGATGGTGACCTGGCTGGCACTGTGCACCCTCAACTGCAG agggttatcaggaaacaacagggatgaggctctgagcttttctttcacaggcatggacttagcagcatttgagATGGATATCCTACAGGAACTTGGGAAGTGTGGACTTCCCACGCACTGCTGATGGTGACCTAGCCGGCACTGTGCACCCACAACTACAGgtgagtgttgtgggagccaggtaggtgtactgtgaacacccaactgaacc #### Adrbk1_ID476_19 --> 0 - 0 Original Alignment CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTC-CTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT ctaggaccttcaccttctttcacaactccgtgcccttttccactttccagCAAAGCCTCCTGACAATGGAGGAAATTCAGTCTGTTGAAGGGGCACAGATCAAGGAACACAAGTGTCTACCTACTTAAGGTCCGAGGTGGCAAGCAGTTTGTATTGCAGTGTGATgtgagagagagtgaggggtgaggcttatggtattggtggaaggtaagtgc Alignment from CESAR CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTC-CTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT ctaggaccttcaccttctttcacaactccgtgcccttttccactttccagCAAAGCCTCCTGACAATGGAGGAAATTCAGTCTGTTGAAGGGGCACAGATCAAGGAACACAAGTGTCTACCTACTTAAGGTCCGAGGTGGCAAGCAGTTTGTATTGCAGTGTGATgtgagagagagtgaggggtgaggcttatggtattggtggaaggtaagtgc Alignment from Spaln_aa2Genome CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTC-CTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT ctaggaccttcaccttctttcacaactccgtgcccttttccactttccagCAAAGCCTCCTGACAATGGAGGAAATTCAGTCTGTTGAAGGGGCACAGATCAAGGAACACAAGTGTCTAcCTACTTAAGGTCCGAGGTGGCAAGCAGTTTGTATTGCAGTGTGATgtgagagagagtgaggggtgaggcttatggtattggtggaaggtaagtgc Alignment from Spaln_nt2Genome CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCT-CCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT ctaggaccttcaccttctttcacaactccgtgcccttttccactttccagCAAAGCCTCCTGACAATGGAGGAAATTCAGTCTGTTGAAGGGGCACAGATCAAGGAACACAAGTGTCTACCTACTTAAGGTCCGAGGTGGCAAGCAGTTTGTATTGCAGTGTGATgtgagagagagtgaggggtgaggcttatggtattggtggaaggtaagtgc Alignment from Pairagon CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCT-CCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT ctaggaccttcaccttctttcacaactccgtgcccttttccactttccagCAAAGCCTCCTGACAATGGAGGAAATTCAGTCTGTTGAAGGGGCACAGATCAAGGAACACAAGTGTCTACCTACTTAAGGTCCGAGGTGGCAAGCAGTTTGTATTGCAGTGTGATgtgagagagagtgaggggtgaggcttatggtattggtggaaggtaagtgc Alignment from Exonerate_protein2genome CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTC-CTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT ctaggaccttcaccttctttcacaactccgtgcccttttccactttccagCAAAGCCTCCTGACAATGGAGGAAATTCAGTCTGTTGAAGGGGCACAGATCAAGGAACACAAGTGTCTACCTACTTAAGGTCCGAGGTGGCAAGCAGTTTGTATTGCAGTGTGATgtgagagagagtgaggggtgaggcttatggtattggtggaaggtaagtgc Alignment from Exonerate_coding2genome CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTC-CTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT ctaggaccttcaccttctttcacaactccgtgcccttttccactttccagCAAAGCCTCCTGACAATGGAGGAAATTCAGTCTGTTGAAGGGGCACAGATCAAGGAACACAAGTGTCTACCTACTTAAGGTCCGAGGTGGCAAGCAGTTTGTATTGCAGTGTGATgtgagagagagtgaggggtgaggcttatggtattggtggaaggtaagtgc Alignment from GeneWise CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATCAAGGAACGCAAGTGTCTC-CTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT ctaggaccttcaccttctttcacaactccgtgcccttttccactttccagCAAAGCCTCCTGACAATGGAGGAAATTCAGTCTGTTGAAGGGGCACAGATCAAGGAACACAAGTGTCTACCTACTTAAGGTCCGAGGTGGCAAGCAGTTTGTATTGCAGTGTGATgtgagagagagtgaggggtgaggcttatggtattggtggaaggtaagtgc #### Adrbk1_ID479_16 --> 0 - 0 Original Alignment TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGAT-GAGGAGGACACAAAAGGAATCAAG tctctgctgccactcccttccataatgactcttttattctcacttcatagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATCGAGGAGGACACAAAAGGAATCAAGgtaagacacctgttcagctcagggtcctgtgtctggatcctgaggctgag Alignment from CESAR TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGAT-GAGGAGGACACAAAAGGAATCAAG tctctgctgccactcccttccataatgactcttttattctcacttcatagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATCGAGGAGGACACAAAAGGAATCAAGgtaagacacctgttcagctcagggtcctgtgtctggatcctgaggctgag Alignment from Spaln_aa2Genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGAT-GAGGAGGACACAAAAGGAATCAAG tctctgctgccactcccttccataatgactcttttattctcacttcatagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATcGAGGAGGACACAAAAGGAATCAAGgtaagacacctgttcagctcagggtcctgtgtctggatcctgaggctgag Alignment from Spaln_nt2Genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGAT-GAGGAGGACACAAAAGGAATCAAG tctctgctgccactcccttccataatgactcttttattctcacttcatagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATCGAGGAGGACACAAAAGGAATCAAGgtaagacacctgttcagctcagggtcctgtgtctggatcctgaggctgag Alignment from Pairagon TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGAT-GAGGAGGACACAAAAGGAATCAAG tctctgctgccactcccttccataatgactcttttattctcacttcatagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATCGAGGAGGACACAAAAGGAATCAAGgtaagacacctgttcagctcagggtcctgtgtctggatcctgaggctgag Alignment from Exonerate_protein2genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGAT-GAGGAGGACACAAAAGGAATCAAG tctctgctgccactcccttccataatgactcttttattctcacttcatagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATCGAGGAGGACACAAAAGGAATCAAGgtaagacacctgttcagctcagggtcctgtgtctggatcctgaggctgag Alignment from Exonerate_coding2genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGAT-GAGGAGGACACAAAAGGAATCAAG tctctgctgccactcccttccataatgactcttttattctcacttcatagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATCGAGGAGGACACAAAAGGAATCAAGgtaagacacctgttcagctcagggtcctgtgtctggatcctgaggctgag Alignment from GeneWise TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGAT-GAGGAGGACACAAAAGGAATCAAG tctctgctgccactcccttccataatgactcttttattctcacttcatagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATCGAGGAGGACACAAAAGGAATCAAGgtaagacacctgttcagctcagggtcctgtgtctggatcctgaggctgag #### Adrbk1_ID482_13 --> 1 - 0 Original Alignment aCACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGC-ATGACGTTGACGATG cccatcagtctagttccgttccccatccctcacccctttctctggtctagaCACAGTCACTTCCGGCAGCACAAGACCAAAGACACTCATGACATCGACCGCCATGACACTCACTATGgtaagtctaacagtggcactaagacctatgtggtgcagaagcataaatcc Alignment from CESAR aCACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGC-ATGACGTTGACGATG cccatcagtctagttccgttccccatccctcacccctttctctggtctagaCACAGTCACTTCCGGCAGCACAAGACCAAAGACACTCATGACATCGACCGCCATGACACTCACTATGgtaagtctaacagtggcactaagacctatgtggtgcagaagcataaatcc Alignment from Spaln_aa2Genome ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGC-ATGACGTTGACGATG cccatcagtctagttccgttccccatccctcacccctttctctggtctagACACAGTCACTTCCGGCAGCACAAGACCAAAGACACTCATGACATCGACCGCcATGACACTCACTATGgtaagtctaacagtggcactaagacctatgtggtgcagaagcataaatcc Alignment from Spaln_nt2Genome ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGC-ATGACGTTGACGATG cccatcagtctagttccgttccccatccctcacccctttctctggtctagACACAGTCACTTCCGGCAGCACAAGACCAAAGACACTCATGACATCGACCGCCATGACACTCACTATGgtaagtctaacagtggcactaagacctatgtggtgcagaagcataaatcc Alignment from Pairagon ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCG-CATGACGTTGACGATG cccatcagtctagttccgttccccatccctcacccctttctctggtctagACACAGTCACTTCCGGCAGCACAAGACCAAAGACACTCATGACATCGACCGCCATGACACTCACTATGgtaagtctaacagtggcactaagacctatgtggtgcagaagcataaatcc Alignment from Exonerate_protein2genome ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGC-ATGACGTTGACGATG cccatcagtctagttccgttccccatccctcacccctttctctggtctagACACAGTCACTTCCGGCAGCACAAGACCAAAGACACTCATGACATCGACCGCCATGACACTCACTATGgtaagtctaacagtggcactaagacctatgtggtgcagaagcataaatcc Alignment from Exonerate_coding2genome ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGC-ATGACGTTGACGATG cccatcagtctagttccgttccccatccctcacccctttctctggtctagACACAGTCACTTCCGGCAGCACAAGACCAAAGACACTCATGACATCGACCGCCATGACACTCACTATGgtaagtctaacagtggcactaagacctatgtggtgcagaagcataaatcc Alignment from GeneWise ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGAC-CGCATGACGTTGACGATG cccatcagtctagttccgttccccatccctcacccctttctctggtctagACACAGTCACTTCCGGCAGCACAAGACCAAAGACACTCATGACATCGACCGCCATGACACTCACTATGgtaagtctaacagtggcactaagacctatgtggtgcagaagcataaatcc #### Adrbk1_ID485_10 --> 2 - 0 Original Alignment CATGAACg gtGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTG-GGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATggtaatatagcttaggggatggttcacatttggtattttacaggtGGGGACCTGCACTACCACTTATCACAGCATGGAGTCTTCTCAGAAGCCGACATGCGTCTCTATGCTGCTGAGATCATCCTACGGCCTTGAACACATGCACAATCATTTTGTAGTTTTCAGGGACTTGAAGgtttgttgcagttgatagggcactctttctctaccctccccctactcctc Alignment from CESAR CATGAACg gtGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTG-GGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATggtaagatagcttaggggatggttcacatttggtattttacaggtGGGGACCTGCACTACCACTTATCACAGCATGGAGTCTTCTCAGAAGCCGACATGCGTCTCTATGCTGCTGAGATCATCCTACGGCCTTGAACACATGCACAATCATTTTGTAGTTTTCAGGGACTTGAAGgtttgttgcagttgatagggcactctttctctaccctccccctactcctc Alignment from Spaln_aa2Genome CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTG-GGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtaatatagcttaggggatggttcacatttggtattttacagGTGGGGACCTGCACTACCACTTATCACAGCATGGAGTCTTCTCAGAAGCCGACATGCGTCTCTATGCTGCTGAGATCATCCTAcGGCCTTGAACACATGCACAATCATTTTGTAGTTTTCAGGGACTTGAAGgtttgttgcagttgatagggcactctttctctaccctccccctactcctc Alignment from Spaln_nt2Genome CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTG-GGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtaatatagcttaggggatggttcacatttggtattttacagGTGGGGACCTGCACTACCACTTATCACAGCATGGAGTCTTCTCAGAAGCCGACATGCGTCTCTATGCTGCTGAGATCATCCTACGGCCTTGAACACATGCACAATCATTTTGTAGTTTTCAGGGACTTGAAGgtttgttgcagttgatagggcactctttctctaccctccccctactcctc Alignment from Pairagon CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTG-GGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtaatatagcttaggggatggttcacatttggtattttacagGTGGGGACCTGCACTACCACTTATCACAGCATGGAGTCTTCTCAGAAGCCGACATGCGTCTCTATGCTGCTGAGATCATCCTACGGCCTTGAACACATGCACAATCATTTTGTAGTTTTCAGGGACTTGAAGgtttgttgcagttgatagggcactctttctctaccctccccctactcctc Alignment from Exonerate_protein2genome CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTG-GGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtaatatagcttaggggatggttcacatttggtattttacagGTGGGGACCTGCACTACCACTTATCACAGCATGGAGTCTTCTCAGAAGCCGACATGCGTCTCTATGCTGCTGAGATCATCCTACGGCCTTGAACACATGCACAATCATTTTGTAGTTTTCAGGGACTTGAAGgtttgttgcagttgatagggcactctttctctaccctccccctactcctc Alignment from Exonerate_coding2genome CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTG-GGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtaatatagcttaggggatggttcacatttggtattttacagGTGGGGACCTGCACTACCACTTATCACAGCATGGAGTCTTCTCAGAAGCCGACATGCGTCTCTATGCTGCTGAGATCATCCTACGGCCTTGAACACATGCACAATCATTTTGTAGTTTTCAGGGACTTGAAGgtttgttgcagttgatagggcactctttctctaccctccccctactcctc Alignment from GeneWise CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATC-CTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG TATGAATGgtaatatagcttaggggatggttcacatttggtattttacagGTGGGGACCTGCACTACCACTTATCACAGCATGGAGTCTTCTCAGAAGCCGACATGCGTCTCTATGCTGCTGAGATCATCCTACGGCCTTGAACACATGCACAATCATTTTGTAGTTTTCAGGGACTTGAAGgtttgttgcagttgatagggcactctttctctaccctccccctactcctc #### Adrbk1_ID487_8 --> 1 - 0 Original Alignment gTACGCCATGAAGTGTCTG---GACAAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAG-CGGATCATGCTTTCCCTCGTCAGCACCGGG cactgctctgtcttgcagggcttgcttagcttacttttgttcttttgtaggTATGCTAAGAGGTGTCTGGAAAACAAGAAACGCATCAAGATGAAACAGGGAGAGACTCTGGCTCTGAACAAGCCGGATTATGCTTTCACTTGTGAGCACTGGGgtataataagtggccaagtggacttccactttgaccattttaacctctca Alignment from CESAR gTACGCCATGAAGTGTCTGGAC---AAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAG-CGGATCATGCTTTCCCTCGTCAGCACCGGG cactgctctgtcttgcagggcttgcttagcttacttttgttcttttgtaggTATGCTAAGAGGTGTCTGGAAAACAAGAAACGCATCAAGATGAAACAGGGAGAGACTCTGGCTCTGAACAAGCCGGATTATGCTTTCACTTGTGAGCACTGGGgtataataagtggccaagtggacttccactttgaccattttaacctctca Alignment from Spaln_aa2Genome GTACGCCATGAAGTGTCTGGAC---AAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAG-CGGATCATGCTTTCCCTCGTCAGCACCGGG cactgctctgtcttgcagggcttgcttagcttacttttgttcttttgtagGTATGCTAAGAGGTGTCTGGAAAACAAGAAACGCATCAAGATGAAACAGGGAGAGACTCTGGCTCTGAACAAGcCGGATTATGCTTTCACTTGTGAGCACTGGGgtataataagtggccaagtggacttccactttgaccattttaacctctca Alignment from Spaln_nt2Genome GTACGCCATGAAGTGTCTGGA---CAAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAG-CGGATCATGCTTTCCCTCGTCAGCACCGGG cactgctctgtcttgcagggcttgcttagcttacttttgttcttttgtagGTATGCTAAGAGGTGTCTGGAAAACAAGAAACGCATCAAGATGAAACAGGGAGAGACTCTGGCTCTGAACAAGCCGGATTATGCTTTCACTTGTGAGCACTGGGgtataataagtggccaagtggacttccactttgaccattttaacctctca Alignment from Pairagon GTACGCCATGAAGTGTCTGG---ACAAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAG-CGGATCATGCTTTCCCTCGTCAGCACCGGG cactgctctgtcttgcagggcttgcttagcttacttttgttcttttgtagGTATGCTAAGAGGTGTCTGGAAAACAAGAAACGCATCAAGATGAAACAGGGAGAGACTCTGGCTCTGAACAAGCCGGATTATGCTTTCACTTGTGAGCACTGGGgtataataagtggccaagtggacttccactttgaccattttaacctctca Alignment from Exonerate_protein2genome GTACGCCATGAAGTGTCTGGAC---AAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAG-CGGATCATGCTTTCCCTCGTCAGCACCGGG cactgctctgtcttgcagggcttgcttagcttacttttgttcttttgtagGTATGCTAAGAGGTGTCTGGAAAACAAGAAACGCATCAAGATGAAACAGGGAGAGACTCTGGCTCTGAACAAGCCGGATTATGCTTTCACTTGTGAGCACTGGGgtataataagtggccaagtggacttccactttgaccattttaacctctca Alignment from Exonerate_coding2genome GTACGCCATGAAGTGTCTGGAC---AAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAACGAG-CGGATCATGCTTTCCCTCGTCAGCACCGGG cactgctctgtcttgcagggcttgcttagcttacttttgttcttttgtagGTATGCTAAGAGGTGTCTGGAAAACAAGAAACGCATCAAGATGAAACAGGGAGAGACTCTGGCTCTGAACAAGCCGGATTATGCTTTCACTTGTGAGCACTGGGgtataataagtggccaagtggacttccactttgaccattttaacctctca Alignment from GeneWise GTACGCCATGAAGTGTCTGGAC---AAGAAACGCATCAAGATGAAGCAGGGAGAGACCCTGGCTCTGAAC-GAGCGGATCATGCTTTCCCTCGTCAGCACCGGG cactgctctgtcttgcagggcttgcttagcttacttttgttcttttgtagGTATGCTAAGAGGTGTCTGGAAAACAAGAAACGCATCAAGATGAAACAGGGAGAGACTCTGGCTCTGAACAAGCCGGATTATGCTTTCACTTGTGAGCACTGGGgtataataagtggccaagtggacttccactttgaccattttaacctctca #### Adrbk1_ID488_7 --> 0 - 2 Original Alignment CTGACCATGAATGACTTCAGT-GTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGat gcacaccaccattgctgtgaaaccagtgtgatctctccattctcttccagCTGACCATGAATGATTTTAGTCGTACATCGAATCATCGGACACGGCGGCTTTGGTGAGGTTTATGGTTGCCGTAAGGCGGATATAGGCAAGatgtaagtactggactggttggggtggccatggaaggagtcaggctttgcat Alignment from CESAR CTGACCATGAATGACTTCAGT-GTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGat gcacaccaccattgctgtgaaaccagtgtgatctctccattctcttccagCTGACCATGAATGATTTTAGTCGTACATCGAATCATCGGACACGGCGGCTTTGGTGAGGTTTATGGTTGCCGTAAGGCGGATATAGGCAAGatgtaagtactggactggttggggtggccatggaaggagtcaggctttgcat Alignment from Spaln_aa2Genome CTGACCATGAATGACTTCAGT-GTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT gcacaccaccattgctgtgaaaccagtgtgatctctccattctcttccagCTGACCATGAATGATTTTAGTcGTACATCGAATCATCGGACACGGCGGCTTTGGTGAGGTTTATGGTTGCCGTAAGGCGGATATAGGCAAGATgtaagtactggactggttggggtggccatggaaggagtcaggctttgcat Alignment from Spaln_nt2Genome CTGACCATGAATGACTTCAGT-GTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT gcacaccaccattgctgtgaaaccagtgtgatctctccattctcttccagCTGACCATGAATGATTTTAGTCGTACATCGAATCATCGGACACGGCGGCTTTGGTGAGGTTTATGGTTGCCGTAAGGCGGATATAGGCAAGATgtaagtactggactggttggggtggccatggaaggagtcaggctttgcat Alignment from Pairagon CTGACCATGAATGACTTCAGT-GTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT gcacaccaccattgctgtgaaaccagtgtgatctctccattctcttccagCTGACCATGAATGATTTTAGTCGTACATCGAATCATCGGACACGGCGGCTTTGGTGAGGTTTATGGTTGCCGTAAGGCGGATATAGGCAAGATgtaagtactggactggttggggtggccatggaaggagtcaggctttgcat Alignment from Exonerate_protein2genome CTGACCATGAATGACTTCAGT-GTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT gcacaccaccattgctgtgaaaccagtgtgatctctccattctcttccagCTGACCATGAATGATTTTAGTCGTACATCGAATCATCGGACACGGCGGCTTTGGTGAGGTTTATGGTTGCCGTAAGGCGGATATAGGCAAGATgtaagtactggactggttggggtggccatggaaggagtcaggctttgcat Alignment from Exonerate_coding2genome CTGACCATGAATGACTTCAGT-GTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT gcacaccaccattgctgtgaaaccagtgtgatctctccattctcttccagCTGACCATGAATGATTTTAGTCGTACATCGAATCATCGGACACGGCGGCTTTGGTGAGGTTTATGGTTGCCGTAAGGCGGATATAGGCAAGATgtaagtactggactggttggggtggccatggaaggagtcaggctttgcat Alignment from GeneWise CTGACCATGAATGACTTC-AGTGTGCATCGAATCATCGGGCGTGGGGGCTTCGGTGAGGTCTATGGGTGCCGGAAAGCAGACACAGGCAAGAT gcacaccaccattgctgtgaaaccagtgtgatctctccattctcttccagCTGACCATGAATGATTTTAGTCGTACATCGAATCATCGGACACGGCGGCTTTGGTGAGGTTTATGGTTGCCGTAAGGCGGATATAGGCAAGATgtaagtactggactggttggggtggccatggaaggagtcaggctttgcat #### Adrbk1_ID490_5 --> 0 - 2 Original Alignment CCATACATTGAGGAGATTTGTCAG-AACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGag aggctgaggcttgccagactgattcacacagggctccatgtgtcccccagCCTTACATTGAGGAGATTTGTCAGCAAACTCCGAAGGGATTTATTCCAAAAGTTTATAGAGaggtgagtaggtgaagtcgacttctctgcccctgcagccaagggtgtcggaa Alignment from CESAR CCATACATTGAGGAGATTTGTCAG-AACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGag aggctgaggcttgccagactgattcacacagggctccatgtgtcccccagCCTTACATTGAGGAGATTTGTCAGCAAACTCCGAAGGGATTTATTCCAAAAGTTTATAGAGaggtgagtaggtgaagtcgacttctctgcccctgcagccaagggtgtcggaa Alignment from Spaln_aa2Genome CCATACATTGAGGAGATTTGTCAG-AACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG aggctgaggcttgccagactgattcacacagggctccatgtgtcccccagCCTTACATTGAGGAGATTTGTCAGcAAACTCCGAAGGGATTTATTCCAAAAGTTTATAGAGAGgtgagtaggtgaagtcgacttctctgcccctgcagccaagggtgtcggaa Alignment from Spaln_nt2Genome CCATACATTGAGGAGATTTGTCAG-AACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG aggctgaggcttgccagactgattcacacagggctccatgtgtcccccagCCTTACATTGAGGAGATTTGTCAGCAAACTCCGAAGGGATTTATTCCAAAAGTTTATAGAGAGgtgagtaggtgaagtcgacttctctgcccctgcagccaagggtgtcggaa Alignment from Pairagon CCATACATTGAGGAGATTTGTCAG-AACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG aggctgaggcttgccagactgattcacacagggctccatgtgtcccccagCCTTACATTGAGGAGATTTGTCAGCAAACTCCGAAGGGATTTATTCCAAAAGTTTATAGAGAGgtgagtaggtgaagtcgacttctctgcccctgcagccaagggtgtcggaa Alignment from Exonerate_protein2genome CCATACATTGAGGAGATTTGTCAG-AACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG aggctgaggcttgccagactgattcacacagggctccatgtgtcccccagCCTTACATTGAGGAGATTTGTCAGCAAACTCCGAAGGGATTTATTCCAAAAGTTTATAGAGAGgtgagtaggtgaagtcgacttctctgcccctgcagccaagggtgtcggaa Alignment from Exonerate_coding2genome CCATACATTGAGGAGATTTGTCAG-AACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG aggctgaggcttgccagactgattcacacagggctccatgtgtcccccagCCTTACATTGAGGAGATTTGTCAGCAAACTCCGAAGGGATTTATTCCAAAAGTTTATAGAGAGgtgagtaggtgaagtcgacttctctgcccctgcagccaagggtgtcggaa Alignment from GeneWise CCATACATTGAGGAGATTTGTCAG-AACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG aggctgaggcttgccagactgattcacacagggctccatgtgtcccccagCCTTACATTGAGGAGATTTGTCAGCAAACTCCGAAGGGATTTATTCCAAAAGTTTATAGAGAGgtgagtaggtgaagtcgacttctctgcccctgcagccaagggtgtcggaa #### Adrbk1_ID491_4 --> 0 - 0 Original Alignment CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAG-CAGGTGCCTCCAGATCTCTTCCAG acaattcttttttctttgttcctatccacctgctgctggtttgttttcagCCCTTTTCACAAAATGCTACAGAGCATGTGCAGGCCCACCTTGTGAAAAAGCCAGGTCCCTCCAGATCTCTTTCAAgtacccttggggtggtcctcatggtttcagacagtcctcataccccactc Alignment from CESAR CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAG-CAGGTGCCTCCAGATCTCTTCCAG acaattcttttttctttgttcctatccacctgctgctggtttgttttcagCCCTTTTCACAAAATGCTACAGAGCATGTGCAGGCCCACCTTGTGAAAAAGCCAGGTCCCTCCAGATCTCTTTCAAgtacccttggggtggtcctcatggtttcagacagtcctcataccccactc Alignment from Spaln_aa2Genome CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAG-CAGGTGCCTCCAGATCTCTTCCAG acaattcttttttctttgttcctatccacctgctgctggtttgttttcagCCCTTTTCACAAAATGCTACAGAGCATGTGCAGGCCCACCTTGTGAAAAAGcCAGGTCCCTCCAGATCTCTTTCAAgtacccttggggtggtcctcatggtttcagacagtcctcataccccactc Alignment from Spaln_nt2Genome CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAG-CAGGTGCCTCCAGATCTCTTCCAG acaattcttttttctttgttcctatccacctgctgctggtttgttttcagCCCTTTTCACAAAATGCTACAGAGCATGTGCAGGCCCACCTTGTGAAAAAGCCAGGTCCCTCCAGATCTCTTTCAAgtacccttggggtggtcctcatggtttcagacagtcctcataccccactc Alignment from Pairagon CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAG-CAGGTGCCTCCAGATCTCTTCCAG acaattcttttttctttgttcctatccacctgctgctggtttgttttcagCCCTTTTCACAAAATGCTACAGAGCATGTGCAGGCCCACCTTGTGAAAAAGCCAGGTCCCTCCAGATCTCTTTCAAgtacccttggggtggtcctcatggtttcagacagtcctcataccccactc Alignment from Exonerate_protein2genome CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAG-CAGGTGCCTCCAGATCTCTTCCAG acaattcttttttctttgttcctatccacctgctgctggtttgttttcagCCCTTTTCACAAAATGCTACAGAGCATGTGCAGGCCCACCTTGTGAAAAAGCCAGGTCCCTCCAGATCTCTTTCAAgtacccttggggtggtcctcatggtttcagacagtcctcataccccactc Alignment from Exonerate_coding2genome CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAG-CAGGTGCCTCCAGATCTCTTCCAG acaattcttttttctttgttcctatccacctgctgctggtttgttttcagCCCTTTTCACAAAATGCTACAGAGCATGTGCAGGCCCACCTTGTGAAAAAGCCAGGTCCCTCCAGATCTCTTTCAAgtacccttggggtggtcctcatggtttcagacagtcctcataccccactc Alignment from GeneWise CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAG-AAGCAGGTGCCTCCAGATCTCTTCCAG acaattcttttttctttgttcctatccacctgctgctggtttgttttcagCCCTTTTCACAAAATGCTACAGAGCATGTGCAGGCCCACCTTGTGAAAAAGCCAGGTCCCTCCAGATCTCTTTCAAgtacccttggggtggtcctcatggtttcagacagtcctcataccccactc #### Afap1l2_ID12244_19 --> 0 - 0 Original Alignment CCACAGCCCAAA-GCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG agtttaatatagacatactaactttactattctttcttaaatgtttgcagCCACAGCCCAAACGCTGCCACCCCTAACCCCCCACCA---GCTACACCAGTTAATTCAGCATCTGTACTAAAGAACAGGCCACTCTCTGTCATGGTTATGGGTAAAGGGACTGTCCTGCAGAAAGCCAAGgtgagttgccgcactccaaattgtagaatgtagcctagcagcccttgctc Alignment from CESAR CCACAGCCCAAA-GCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG agtttaatatagacatactaactttactattctttcttaaatgtttgcagCCACAGCCCAAACGCTGCCACCCCTAACCCCCCACCA---GCTACACCAGTTAATTCAGCATCTGTACTAAAGAACAGGCCACTCTCTGTCATGGTTATGGGTAAAGGGACTGTCCTGCAGAAAGCCAAGgtgagttgccgcactccaaattgtagaatgtagcctagcagcccttgctc Alignment from Spaln_aa2Genome -CCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG agtttaatatagacatactaactttactattctttcttaaatgtttgcagccacagCCCAAACGCTGCCACCCCTAACCCCCCACCA---GCTACACCAGTTAATTCAGCATCTGTACTAAAGAACAGGCCACTCTCTGTCATGGTTATGGGTAAAGGGACTGTCCTGCAGAAAGCCAAGgtgagttgccgcactccaaattgtagaatgtagcctagcagcccttgctc Alignment from Spaln_nt2Genome CCACAGCCCAAA-GCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG agtttaatatagacatactaactttactattctttcttaaatgtttgcagCCACAGCCCAAACGCTGCCACCCCTAACCCCCCACCAG---CTACACCAGTTAATTCAGCATCTGTACTAAAGAACAGGCCACTCTCTGTCATGGTTATGGGTAAAGGGACTGTCCTGCAGAAAGCCAAGgtgagttgccgcactccaaattgtagaatgtagcctagcagcccttgctc Alignment from Pairagon CCACAGCCCAAA-GCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG agtttaatatagacatactaactttactattctttcttaaatgtttgcagCCACAGCCCAAACGCTGCCACCCCTAACCCCCCACCAG---CTACACCAGTTAATTCAGCATCTGTACTAAAGAACAGGCCACTCTCTGTCATGGTTATGGGTAAAGGGACTGTCCTGCAGAAAGCCAAGgtgagttgccgcactccaaattgtagaatgtagcctagcagcccttgctc Alignment from Exonerate_protein2genome CCACAGCCCAAA-GCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG agtttaatatagacatactaactttactattctttcttaaatgtttgcagCCACAGCCCAAACGCTGCCACCCCTAACCCCCCACCA---GCTACACCAGTTAATTCAGCATCTGTACTAAAGAACAGGCCACTCTCTGTCATGGTTATGGGTAAAGGGACTGTCCTGCAGAAAGCCAAGgtgagttgccgcactccaaattgtagaatgtagcctagcagcccttgctc Alignment from Exonerate_coding2genome CCACAGCCCAAA-GCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG agtttaatatagacatactaactttactattctttcttaaatgtttgcagCCACAGCCCAAACGCTGCCACCCCTAACCCCCCACCA---GCTACACCAGTTAATTCAGCATCTGTACTAAAGAACAGGCCACTCTCTGTCATGGTTATGGGTAAAGGGACTGTCCTGCAGAAAGCCAAGgtgagttgccgcactccaaattgtagaatgtagcctagcagcccttgctc Alignment from GeneWise GCCCAAAGCTGCCACCCCCAACCCCCCACCAGACTCCACGCCAGTCAACTCTGCATCTGTGCTCAAGAACAGGCCTCTTTCCGTCATGGTCACAGGCAAAGGCACTGTCCTGCAGAAAGCCAAG agtttaatatagacatactaactttactattctttcttaaatgtttgcagccacagCCCAAACGCTGCCACCCCTAACCCCCCACCA---GCTACACCAGTTAATTCAGCATCTGTACTAAAGAACAGGCCACTCTCTGTCATGGTTATGGGTAAAGGGACTGTCCTGCAGAAAGCCAAGgtgagttgccgcactccaaattgtagaatgtagcctagcagcccttgctc #### Afap1l2_ID12248_15 --> 0 - 0 Original Alignment GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTG-CACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG aagagtaaacctgctggctttttcaggtcaaatctttcctcttcctgcagGTGGAACCAGCTGAGGAAGCAGCC---ACTGTTGATGCCAACAGTGGAAGCGAGCCAGACAGAGTGTACTTGGAT---ACACCAGTAAAATCTTTCTTGCCATAGTAGTAGAGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGATGTAGCTGAGACCCTTACAGTAGACCCAGAGTCAATCACCACCCAAGAGGAGCCCCACACAGGGTCACCAGGAGACCCTGAGTTGCAGCAAgtgggtgtggtttggtcactaactgtacccgtcgcctgctctctaggcct Alignment from CESAR GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTG-CACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG aagagtaaacctgctggctttttcaggtcaaatctttcctcttcctgcagGTGGAACCAGCTGAGGAAGCAGCC---ACTGTTGATGCCAACAGTGGAAGCGAGCCAGACAGAGTGTACTTGGAT---ACACCAGTAAAATCTTTCTTGCCATAGTAGTAGAGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGATGTAGCTGAGACCCTTACAGTAGACCCAGAGTCAATCACCACCCAAGAGGAGCCCCACACAGGGTCACCAGGAGACCCTGAGTTGCAGCAAgtgggtgtggtttggtcactaactgtacccgtcgcctgctctctaggcct Alignment from Spaln_aa2Genome GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTG-CACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG aagagtaaacctgctggctttttcaggtcaaatctttcctcttcctgcagGTGGAACCAGCTGAGGAAGCAGCC---ACTGTTGATGCCAACAGTGGAAGCGAGCCAGACAGAGTGTACTTGGAT---ACACCAGTAAAATCTTTCTTGcCATAGTAGTAGAGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGATGTAGCTGAGACCCTTACAGTAGACCCAGAGTCAATCACCACCCAAGAGGAGCCCCACACAGGGTCACCAGGAGACCCTGAGTTGCAGCAAgtgggtgtggtttggtcactaactgtacccgtcgcctgctctctaggcct Alignment from Spaln_nt2Genome GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTGC-ACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG aagagtaaacctgctggctttttcaggtcaaatctttcctcttcctgcagGTGGAACCAGCTGAGGAAGCAGCC---ACTGTTGATGCCAACAGTGGAAGCGAGCCAGACAGAGTGTACTTGGAT---ACACCAGTAAAATCTTTCTTGCCATAGTAGTAGAGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGATGTAGCTGAGACCCTTACAGTAGACCCAGAGTCAATCACCACCCAAGAGGAGCCCCACACAGGGTCACCAGGAGACCCTGAGTTGCAGCAAgtgggtgtggtttggtcactaactgtacccgtcgcctgctctctaggcct Alignment from Pairagon GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTG-CACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG aagagtaaacctgctggctttttcaggtcaaatctttcctcttcctgcagGTGGAACCAGCTGAGGAAGCAGCC---ACTGTTGATGCCAACAGTGGAAGCGAGCCAGACAGAGTGTACTTGGAT---ACACCAGTAAAATCTTTCTTGCCATAGTAGTAGAGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGATGTAGCTGAGACCCTTACAGTAGACCCAGAGTCAATCACCACCCAAGAGGAGCCCCACACAGGGTCACCAGGAGACCCTGAGTTGCAGCAAgtgggtgtggtttggtcactaactgtacccgtcgcctgctctctaggcct Alignment from Exonerate_protein2genome GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTG-CACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG aagagtaaacctgctggctttttcaggtcaaatctttcctcttcctgcagGTGGAACCAGCTGAGGAAGCAGCC---ACTGTTGATGCCAACAGTGGAAGCGAGCCAGACAGAGTGTACTTGGAT---ACACCAGTAAAATCTTTCTTGCCATAGTAGTAGAGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGATGTAGCTGAGACCCTTACAGTAGACCCAGAGTCAATCACCACCCAAGAGGAGCCCCACACAGGGTCACCAGGAGACCCTGAGTTGCAGCAAgtgggtgtggtttggtcactaactgtacccgtcgcctgctctctaggcct Alignment from Exonerate_coding2genome GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTCCTG-CACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG aagagtaaacctgctggctttttcaggtcaaatctttcctcttcctgcagGTGGAACCAGCTGAGGAAGCAGCC---ACTGTTGATGCCAACAGTGGAAGCGAGCCAGACAGAGTGTACTTGGAT---ACACCAGTAAAATCTTTCTTGCCATAGTAGTAGAGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGATGTAGCTGAGACCCTTACAGTAGACCCAGAGTCAATCACCACCCAAGAGGAGCCCCACACAGGGTCACCAGGAGACCCTGAGTTGCAGCAAgtgggtgtggtttggtcactaactgtacccgtcgcctgctctctaggcct Alignment from GeneWise GTGGAGCCTGCCGAGGAAGCCGCCCCTGCTGTCGATGCTAACAGTGGTAGTGAGCCAGACAGAGTCTACCTGGATCTCACACCGGTCAAGTCCTTC-CTGCACAGTAGCAGTGAGGCTCAGGCGCAGGCCTCTCTCCCAGCAGTGCCACATCAGGACGATGTAGCTGAGACCCTCACAGTAGACCCAAAGCCAGGCACCACCCCAGAGGAGCCCCACACAGAGTCTCCAGGAGACCCAGAGGTGCAGCAG aagagtaaacctgctggctttttcaggtcaaatctttcctcttcctgcagGTGGAACCAGCTGAGGAAGCAGCC---ACTGTTGATGCCAACAGTGGAAGCGAGCCAGACAGAGTGTACTTGGAT---ACACCAGTAAAATCTTTCTTGCCATAGTAGTAGAGAGGCTCAGGCACAGGCCTCTCTTCCTGCTGTGCCACATCAGGATGATGTAGCTGAGACCCTTACAGTAGACCCAGAGTCAATCACCACCCAAGAGGAGCCCCACACAGGGTCACCAGGAGACCCTGAGTTGCAGCAAgtgggtgtggtttggtcactaactgtacccgtcgcctgctctctaggcct #### Aldh3b2_ID237_3 --> 0 - 0 Original Alignment TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTG-GCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG gtgatgattaggttcagcctagcctcaatgttccctgcctttccctgcagTCAGGCTTTGAGTCAGACATGAGTGAGATCTTTCTGTGTGAGAATGAGGTGGATTTGCGCCCTTAAGAATCTGCAGACGTGGATGAAGGATGAACCTGTGCCCACAAATTTGgtaagacctgtcagtgtactgaagtgtcagtgagtggccagccccaaatc Alignment from CESAR TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTG-GCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG gtgatgattaggttcagcctagcctcaatgttccctgcctttccctgcagTCAGGCTTTGAGTCAGACATGAGTGAGATCTTTCTGTGTGAGAATGAGGTGGATTTGCGCCCTTAAGAATCTGCAGACGTGGATGAAGGATGAACCTGTGCCCACAAATTTGgtaagacctgtcagtgtactgaagtgtcagtgagtggccagccccaaatc Alignment from Spaln_aa2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTG-GCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG gtgatgattaggttcagcctagcctcaatgttccctgcctttccctgcagTCAGGCTTTGAGTCAGACATGAGTGAGATCTTTCTGTGTGAGAATGAGGTGGATTTGcGCCCTTAAGAATCTGCAGACGTGGATGAAGGATGAACCTGTGCCCACAAATTTGgtaagacctgtcagtgtactgaagtgtcagtgagtggccagccccaaatc Alignment from Spaln_nt2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTG-GCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG gtgatgattaggttcagcctagcctcaatgttccctgcctttccctgcagTCAGGCTTTGAGTCAGACATGAGTGAGATCTTTCTGTGTGAGAATGAGGTGGATTTGCGCCCTTAAGAATCTGCAGACGTGGATGAAGGATGAACCTGTGCCCACAAATTTGgtaagacctgtcagtgtactgaagtgtcagtgagtggccagccccaaatc Alignment from Pairagon TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTG-GCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG gtgatgattaggttcagcctagcctcaatgttccctgcctttccctgcagTCAGGCTTTGAGTCAGACATGAGTGAGATCTTTCTGTGTGAGAATGAGGTGGATTTGCGCCCTTAAGAATCTGCAGACGTGGATGAAGGATGAACCTGTGCCCACAAATTTGgtaagacctgtcagtgtactgaagtgtcagtgagtggccagccccaaatc Alignment from Exonerate_protein2genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTG-GCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG gtgatgattaggttcagcctagcctcaatgttccctgcctttccctgcagTCAGGCTTTGAGTCAGACATGAGTGAGATCTTTCTGTGTGAGAATGAGGTGGATTTGCGCCCTTAAGAATCTGCAGACGTGGATGAAGGATGAACCTGTGCCCACAAATTTGgtaagacctgtcagtgtactgaagtgtcagtgagtggccagccccaaatc Alignment from Exonerate_coding2genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTG-GCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG gtgatgattaggttcagcctagcctcaatgttccctgcctttccctgcagTCAGGCTTTGAGTCAGACATGAGTGAGATCTTTCTGTGTGAGAATGAGGTGGATTTGCGCCCTTAAGAATCTGCAGACGTGGATGAAGGATGAACCTGTGCCCACAAATTTGgtaagacctgtcagtgtactgaagtgtcagtgagtggccagccccaaatc Alignment from GeneWise TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTG-GCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG gtgatgattaggttcagcctagcctcaatgttccctgcctttccctgcagTCAGGCTTTGAGTCAGACATGAGTGAGATCTTTCTGTGTGAGAATGAGGTGGATTTGCGCCCTTAAGAATCTGCAGACGTGGATGAAGGATGAACCTGTGCCCACAAATTTGgtaagacctgtcagtgtactgaagtgtcagtgagtggccagccccaaatc #### Aldh3b2_ID238_4 --> 0 - 1 Original Alignment CTCACCAAGCTGAGCTCAGCCTTC-ATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg ccattcatctgactcttcatttaccactgacaccctttgccgtcccacagCTCACAAAGCTTAGCTCAGCCTTCCATCCGGAAAGAGCCCTTTGGTCTTGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTGGTGGGGGCCATTGCTGCAggtgagtgaggttttgagcccacccattctgatgagagtgccctaagaggg Alignment from CESAR CTCACCAAGCTGAGCTCAGCCTTC-ATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg ccattcatctgactcttcatttaccactgacaccctttgccgtcccacagCTCACAAAGCTTAGCTCAGCCTTCCATCCGGAAAGAGCCCTTTGGTCTTGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTGGTGGGGGCCATTGCTGCAggtgagtgaggttttgagcccacccattctgatgagagtgccctaagaggg Alignment from Spaln_aa2Genome CTCACCAAGCTGAGCTCAGCCTTC-ATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ccattcatctgactcttcatttaccactgacaccctttgccgtcccacagCTCACAAAGCTTAGCTCAGCCTTCcATCCGGAAAGAGCCCTTTGGTCTTGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTGGTGGGGGCCATTGCTGCAGgtgagtgaggttttgagcccacccattctgatgagagtgccctaagaggg Alignment from Spaln_nt2Genome CTCACCAAGCTGAGCTCAGCCTTC-ATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ccattcatctgactcttcatttaccactgacaccctttgccgtcccacagCTCACAAAGCTTAGCTCAGCCTTCCATCCGGAAAGAGCCCTTTGGTCTTGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTGGTGGGGGCCATTGCTGCAGgtgagtgaggttttgagcccacccattctgatgagagtgccctaagaggg Alignment from Pairagon CTCACCAAGCTGAGCTCAGCCTT-CATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ccattcatctgactcttcatttaccactgacaccctttgccgtcccacagCTCACAAAGCTTAGCTCAGCCTTCCATCCGGAAAGAGCCCTTTGGTCTTGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTGGTGGGGGCCATTGCTGCAGgtgagtgaggttttgagcccacccattctgatgagagtgccctaagaggg Alignment from Exonerate_protein2genome CTCACCAAGCTGAGCTCAGCCTTC-ATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ccattcatctgactcttcatttaccactgacaccctttgccgtcccacagCTCACAAAGCTTAGCTCAGCCTTCCATCCGGAAAGAGCCCTTTGGTCTTGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTGGTGGGGGCCATTGCTGCAGgtgagtgaggttttgagcccacccattctgatgagagtgccctaagaggg Alignment from Exonerate_coding2genome CTCACCAAGCTGAGCTCAGCCTTC-ATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ccattcatctgactcttcatttaccactgacaccctttgccgtcccacagCTCACAAAGCTTAGCTCAGCCTTCCATCCGGAAAGAGCCCTTTGGTCTTGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTGGTGGGGGCCATTGCTGCAGgtgagtgaggttttgagcccacccattctgatgagagtgccctaagaggg Alignment from GeneWise GCTCAGCCTTCATCCGGAAAGAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG ccattcatctgactcttcatttaccactgacaccctttgccgtcccacagctcacaaagcttagCTCAGCCTTCCATCCGGAAAGAGCCCTTTGGTCTTGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTGGTGGGGGCCATTGCTGCAGgtgagtgaggttttgagcccacccattctgatgagagtgccctaagaggg #### Aldh3b2_ID240_6 --> 0 - 1 Original Alignment CTGCCCCAGTATCTGGACCAG AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGG-CAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAg CTG---CAGCATCTGGACCAGgtaggcactcagaattttctttcccacagAGCTGCTTTGCTGTGATGCTGGGAGGACCTGATGAGACCAGGCCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAggttagtcctatggatttgggacctggggtagagcagggcagcacacaatt Alignment from CESAR CTGCCCCAGTATCTGGACCAG AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGG-CAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAg CTG---CAGCATCTGGACCAGgtgagcactcagaattttctttcccacagAGCTGCTTTGCTGTGATGCTGGGAGGACCTGATGAGACCAGGCCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAggttagtcctatggatttgggacctggggtagagcagggcagcacacaatt Alignment from Spaln_aa2Genome CTGCTGCC CCAGTATCTGGACCAGAGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGG-CAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG CTACTGCAgcatctggaccaggtaggcactcagaattttctttcccacagagC------------------TGCTTTGCTGTGATGCTGGGAGGACCTGATGAGACCAGGcCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAGgttagtcctatggatttgggacctggggtagagcagggcagcacacaatt Alignment from Spaln_nt2Genome CTGCCCCAGTATCTGGACCAG-------------------------------AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGG-CAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG CTG---CAGCATCTGGACCAGGTAGGCACTCAGAATTTTCTTTCCCACAGAG--CTGCTTTGCTGTGATGCTGGGAGGACCTGATGAGACCAGGCCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAGgttagtcctatggatttgggacctggggtagagcagggcagcacacaatt Alignment from Pairagon CTGCCCCAGTATCTGGACCAG-----------------------------AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGG-CAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG CTG---CAGCATCTGGACCAGGTAGGCACTCAGAATTTTCTTTCCCACAGAGCTGCTTTGCTGTGATGCTGGGAGGACCTGATGAGACCAGGCCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAGgttagtcctatggatttgggacctggggtagagcagggcagcacacaatt Alignment from Exonerate_protein2genome CTGCCCCAGTATCTGGACCA GAGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAG CTG---CAGCATCTGGACCAggtaggcactcagaattttctttcccacagAGCTGCTTTGCTGTGATGCTGGGAGGACCTGATGAGACCAGGCCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAGgttagtcctatggatttgggacctggggtagagcagggcagcacacaatt Alignment from Exonerate_coding2genome CTGCCCCAGTATCTGGACCA GAGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGGCAG---CTGCTGGAACACAAATTTGACTATATCTTCTTCACAG CTG---CAGCATCTGGACCAggtaggcactcagaattttctttcccacagA-GCTGCTTTGCTGTGATGCTGGGAGGACCTGATGAGACCAGGC--CAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAGgttagtcctatggatttgggacctggggtagagcagggcagcacacaatt Alignment from GeneWise CTGCCCCAGTATCTGGACCAG AGCTGCTTTGCTGTGATGTTGGGAGGACCCGAGGAGACCAGG-CAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAGGAAG CTG---CAGCATCTGGACCAGgtaggcactcagaattttctttcccacagAGCTGCTTTGCTGTGATGCTGGGAGGACCTGATGAGACCAGGCCAGCTGCTGGAACACAAATTTGACTATATCTTCTTCACAGGTTAgtcctatggatttgggacctggggtagagcagggcagcacacaatt #### Aldh3b2_ID241_7 --> 2 - 1 Original Alignment gaAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCAT-TTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTg aggctgaagggtgtgctagttgaacaggttttccttaaaatatgttataggaAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTGCAGCCAATCACCTGACCCCCACCTCCCTGCAACTGGGAGGCAAGAATCCCTGCTAT---GATGACAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGTCAGACCTGTGTGGCCCCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTATCTGCCTTGCAAAATTCCATCACTCGTTTCTATGGAGACAATCCACAGACTTCACCTAACCTGGGAAGGATAATCAATCAGAAGCATCTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGGTCAGAGTGATGAGGGAGGGTGCTGCATTggtgctgctcttgctgcgtctgtggccccagcatagagcccatgggaccct Alignment from CESAR gaAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCAT-TTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTg aggctgaagggtgtgctagttgaacaggttttccttaaaatatgttataggaAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTGCAGCCAATCACCTGACCCCCACCTCCCTGCAACTGGGAGGCAAGAATCCCTGCTAT---GATGACAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGTCAGACCTGTGTGGCCCCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTATCTGCCTTGCAAAATTCCATCACTCGTTTCTATGGAGACAATCCACAGACTTCACCTAACCTGGGAAGGATAATCAATCAGAAGCATCTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGGTCAGAGTGATGAGGGAGGGTGCTGCATTggtgctgctcttgctgcgtctgtggccccagcatagagcccatgggaccct Alignment from Spaln_aa2Genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCAT-TTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaagggtgtgctagttgaacaggttttccttaaaatatgttatagGAAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTGCAGCCAATCACCTGACCCCCACCTCCCTGCAACTGGGAGGCAAGAATCCCTGCTATGAT---GACAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGTCAGACCTGTGTGGCCCCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTATCTGCCTTGCAAAATTCCATCACTCGTTTCTATGGAGACAATCCACAGACTTCACCTAACCTGGGAAGGATAATCAATCAGAAGCATcTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGGTCAGAGTGATGAGGGAGGGTGCTGCATTGgtgctgctcttgctgcgtctgtggccccagcatagagcccatgggaccct Alignment from Spaln_nt2Genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCAT-TTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaagggtgtgctagttgaacaggttttccttaaaatatgttatagGAAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTGCAGCCAATCACCTGACCCCCACCTCCCTGCAACTGGGAGGCAAGAATCCCTGCTAT---GATGACAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGTCAGACCTGTGTGGCCCCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTATCTGCCTTGCAAAATTCCATCACTCGTTTCTATGGAGACAATCCACAGACTTCACCTAACCTGGGAAGGATAATCAATCAGAAGCATCTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGGTCAGAGTGATGAGGGAGGGTGCTGCATTGgtgctgctcttgctgcgtctgtggccccagcatagagcccatgggaccct Alignment from Pairagon GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCAT-TTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaagggtgtgctagttgaacaggttttccttaaaatatgttatagGAAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTGCAGCCAATCACCTGACCCCCACCTCCCTGCAACTGGGAGGCAAGAATCCCTGCTAT---GATGACAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGTCAGACCTGTGTGGCCCCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTATCTGCCTTGCAAAATTCCATCACTCGTTTCTATGGAGACAATCCACAGACTTCACCTAACCTGGGAAGGATAATCAATCAGAAGCATCTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGGTCAGAGTGATGAGGGAGGGTGCTGCATTGgtgctgctcttgctgcgtctgtggccccagcatagagcccatgggaccct Alignment from Exonerate_protein2genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCAT-TTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaagggtgtgctagttgaacaggttttccttaaaatatgttatagGAAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTGCAGCCAATCACCTGACCCCCACCTCCCTGCAACTGGGAGGCAAGAATCCCTGCTAT---GATGACAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGTCAGACCTGTGTGGCCCCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTATCTGCCTTGCAAAATTCCATCACTCGTTTCTATGGAGACAATCCACAGACTTCACCTAACCTGGGAAGGATAATCAATCAGAAGCATCTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGGTCAGAGTGATGAGGGAGGGTGCTGCATTGgtgctgctcttgctgcgtctgtggccccagcatagagcccatgggaccct Alignment from Exonerate_coding2genome GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCAT-TTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaagggtgtgctagttgaacaggttttccttaaaatatgttatagGAAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTGCAGCCAATCACCTGACCCCCACCTCCCTGCAACTGGGAGGCAAGAATCCCTGCTAT---GATGACAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGTCAGACCTGTGTGGCCCCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTATCTGCCTTGCAAAATTCCATCACTCGTTTCTATGGAGACAATCCACAGACTTCACCTAACCTGGGAAGGATAATCAATCAGAAGCATCTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGGTCAGAGTGATGAGGGAGGGTGCTGCATTGgtgctgctcttgctgcgtctgtggccccagcatagagcccatgggaccct Alignment from GeneWise GAAGTCCTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCAAACACCTGACACCCATCACCCTGGAGCTGGGGGGTAAGAACCCCTGCTATGTGGATGACAACTGCGACCCCCAGACAGTGGCCAACCGTGTGGCCTGGTTCCGCTATTTCAATGCCGGCCAGACCTGTGTGGCCCCCGATTATATCCTGTGTAGCCAGGAGATGCAGGAGCGGTTGGTGCCTGCCCTGCAGAATTCCATCACGCGTTTCTATGGAGATAACCCACAGACCTCCCCCAACCTGGGCAGAATCATCAACCAGAAGCAT-TTCAAGAGGCTCCAGGGATTGCTGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTG aggctgaagggtgtgctagttgaacaggttttccttaaaatatgttatagGAAGCCCTCGAGTAGGCAAGATGGTGATGACTGCTGCAGCCAATCACCTGACCCCCACCTCCCTGCAACTGGGAGGCAAGAATCCCTGCTAT---GATGACAACTGTGACCCACAGACAGTGACCAACCGTGTGGCCTGGTTCCACTATTTCAATGCTGGTCAGACCTGTGTGGCCCCAGAATACATCTTGTGTAGCCAAGAGATGCAGGAACGGTTGGTATCTGCCTTGCAAAATTCCATCACTCGTTTCTATGGAGACAATCCACAGACTTCACCTAACCTGGGAAGGATAATCAATCAGAAGCATCTTCAAGAGGCTCCAGGGATTGCTGGGGTGTGGCCGTGTGGCCATTGGTGGTCAGAGTGATGAGGGAGGGTGCTGCATTGgtgctgctcttgctgcgtctgtggccccagcatagagcccatgggaccct #### Aldh3b2_ID242_8 --> 2 - 0 Original Alignment ccCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCC-TTCTCCAACAACAACCAG ctctctgtggcatcaatcaggcctgacttttatttctcctcctgttgtagccCCAACAGTTCTAGTAGATGTCCAGGCAACAGAACCTCTTATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGTGTCCATTAACCAGTGGGAAAAGCCTCTAGCACTGTTTGCCCTTTTCAAACAACAACCAGgtacagtggtgatgagaccataagtagcctggtcccatcaaatagtgaag Alignment from CESAR ccCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCC-TTCTCCAACAACAACCAG ctctctgtggcatcaatcaggcctgacttttatttctcctcctgttgtagccCCAACAGTTCTAGTAGATGTCCAGGCAACAGAACCTCTTATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGTGTCCATTAACCAGTGGGAAAAGCCTCTAGCACTGTTTGCCCTTTTCAAACAACAACCAGgtacagtggtgatgagaccataagtagcctggtcccatcaaatagtgaag Alignment from Spaln_aa2Genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCC-TTCTCCAACAACAACCAG ctctctgtggcatcaatcaggcctgacttttatttctcctcctgttgtagCCCCAACAGTTCTAGTAGATGTCCAGGCAACAGAACCTCTTATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGTGTCCATTAACCAGTGGGAAAAGCCTCTAGCACTGTTTGCCcTTTTCAAACAACAACCAGgtacagtggtgatgagaccataagtagcctggtcccatcaaatagtgaag Alignment from Spaln_nt2Genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCC-TTCTCCAACAACAACCAG ctctctgtggcatcaatcaggcctgacttttatttctcctcctgttgtagCCCCAACAGTTCTAGTAGATGTCCAGGCAACAGAACCTCTTATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGTGTCCATTAACCAGTGGGAAAAGCCTCTAGCACTGTTTGCCCTTTTCAAACAACAACCAGgtacagtggtgatgagaccataagtagcctggtcccatcaaatagtgaag Alignment from Pairagon CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATG-CCTTCTCCAACAACAACCAG ctctctgtggcatcaatcaggcctgacttttatttctcctcctgttgtagCCCCAACAGTTCTAGTAGATGTCCAGGCAACAGAACCTCTTATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGTGTCCATTAACCAGTGGGAAAAGCCTCTAGCACTGTTTGCCCTTTTCAAACAACAACCAGgtacagtggtgatgagaccataagtagcctggtcccatcaaatagtgaag Alignment from Exonerate_protein2genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCC-TTCTCCAACAACAACCAG ctctctgtggcatcaatcaggcctgacttttatttctcctcctgttgtagCCCCAACAGTTCTAGTAGATGTCCAGGCAACAGAACCTCTTATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGTGTCCATTAACCAGTGGGAAAAGCCTCTAGCACTGTTTGCCCTTTTCAAACAACAACCAGgtacagtggtgatgagaccataagtagcctggtcccatcaaatagtgaag Alignment from Exonerate_coding2genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCC-TTCTCCAACAACAACCAG ctctctgtggcatcaatcaggcctgacttttatttctcctcctgttgtagCCCCAACAGTTCTAGTAGATGTCCAGGCAACAGAACCTCTTATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGTGTCCATTAACCAGTGGGAAAAGCCTCTAGCACTGTTTGCCCTTTTCAAACAACAACCAGgtacagtggtgatgagaccataagtagcctggtcccatcaaatagtgaag Alignment from GeneWise CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTAT-GCCTTCTCCAACAACAACCAG ctctctgtggcatcaatcaggcctgacttttatttctcctcctgttgtagCCCCAACAGTTCTAGTAGATGTCCAGGCAACAGAACCTCTTATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGTGTCCATTAACCAGTGGGAAAAGCCTCTAGCACTGTTTGCCCTTTTCAAACAACAACCAGgtacagtggtgatgagaccataagtagcctggtcccatcaaatagtgaag #### Ankrd13d_ID461_12 --> 2 - 1 Original Alignment agATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGT-AACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAg aggggttactggggcatactggcaacctcactccctttgccccaccacagaaATTCCCCTCTTTCATGTGCATAATGCCCGCATCACCTTCAGTCAACCTTTGTGGCTGTGATGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTTTAGCCATTTCTGCTTCAggtgcgtctatagccatgtatgatattcccatctgactttccgataagcct Alignment from CESAR agATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGT-AACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAg aggggttactggggcatactggcaacctcactccctttgccccaccacagaaATTCCCCTCTTTCATGTGCATAATGCCCGCATCACCTTCAGTCAACCTTTGTGGCTGTGATGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTTTAGCCATTTCTGCTTCAggtgcgtctatagccatgtatgatattcccatctgactttccgataagcct Alignment from Spaln_aa2Genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGT-AACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG aggggttactggggcatactggcaacctcactccctttgccccaccacagAAATTCCCCTCTTTCATGTGCATAATGCCCGCATCACCTTCAGTcAACCTTTGTGGCTGTGATGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTTTAGCCATTTCTGCTTCAGgtgcgtctatagccatgtatgatattcccatctgactttccgataagcct Alignment from Spaln_nt2Genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGT-AACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG aggggttactggggcatactggcaacctcactccctttgccccaccacagAAATTCCCCTCTTTCATGTGCATAATGCCCGCATCACCTTCAGTCAACCTTTGTGGCTGTGATGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTTTAGCCATTTCTGCTTCAGgtgcgtctatagccatgtatgatattcccatctgactttccgataagcct Alignment from Pairagon AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGT-AACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG aggggttactggggcatactggcaacctcactccctttgccccaccacagAAATTCCCCTCTTTCATGTGCATAATGCCCGCATCACCTTCAGTCAACCTTTGTGGCTGTGATGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTTTAGCCATTTCTGCTTCAGgtgcgtctatagccatgtatgatattcccatctgactttccgataagcct Alignment from Exonerate_protein2genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGT-AACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG aggggttactggggcatactggcaacctcactccctttgccccaccacagAAATTCCCCTCTTTCATGTGCATAATGCCCGCATCACCTTCAGTCAACCTTTGTGGCTGTGATGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTTTAGCCATTTCTGCTTCAGgtgcgtctatagccatgtatgatattcccatctgactttccgataagcct Alignment from Exonerate_coding2genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGT-AACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG aggggttactggggcatactggcaacctcactccctttgccccaccacagAAATTCCCCTCTTTCATGTGCATAATGCCCGCATCACCTTCAGTCAACCTTTGTGGCTGTGATGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTTTAGCCATTTCTGCTTCAGgtgcgtctatagccatgtatgatattcccatctgactttccgataagcct Alignment from GeneWise AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTC-AGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG aggggttactggggcatactggcaacctcactccctttgccccaccacagAAATTCCCCTCTTTCATGTGCATAATGCCCGCATCACCTTCAGTCAACCTTTGTGGCTGTGATGAACCTGTGAGCTCAGTGTGTGTCCCCAACTCCAGTTTAGCCATTTCTGCTTCAGgtgcgtctatagccatgtatgatattcccatctgactttccgataagcct #### Ankrd13d_ID471_2 --> 0 - 1 Original Alignment CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACC-TTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAg gcattggtcctcttgtccgatgtattatagtaactgaaccattccctcagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCACTGGAGCTTGCTGTGACTCTTGGGGAACTTAGAGTCAGTGCGAGTCCTCCTCAAACATAATGCCAATGTAGGCAAGGAAAGCCACCAAGGCTGGGCTggtaccctgctaggtggtgcttccatgttggtgaatggtgcctacaggact Alignment from CESAR CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACC-TTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAg gcattggtcctcttgtccgatgtattatagtaactgaaccattccctcagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCACTGGAGCTTGCTGTGACTCTTGGGGAACTTAGAGTCAGTGCGAGTCCTCCTCAAACATAATGCCAATGTAGGCAAGGAAAGCCACCAAGGCTGGGCTggtaccctgctaggtggtgcttccatgttggtgaatggtgcctacaggact Alignment from Spaln_aa2Genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACC-TTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gcattggtcctcttgtccgatgtattatagtaactgaaccattccctcagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCACTGGAGCTTGCTGTGACTcTTGGGGAACTTAGAGTCAGTGCGAGTCCTCCTCAAACATAATGCCAATGTAGGCAAGGAAAGCCACCAAGGCTGGGCTGgtaccctgctaggtggtgcttccatgttggtgaatggtgcctacaggact Alignment from Spaln_nt2Genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGAC-CTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gcattggtcctcttgtccgatgtattatagtaactgaaccattccctcagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCACTGGAGCTTGCTGTGACTCTTGGGGAACTTAGAGTCAGTGCGAGTCCTCCTCAAACATAATGCCAATGTAGGCAAGGAAAGCCACCAAGGCTGGGCTGgtaccctgctaggtggtgcttccatgttggtgaatggtgcctacaggact Alignment from Pairagon CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGAC-CTTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gcattggtcctcttgtccgatgtattatagtaactgaaccattccctcagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCACTGGAGCTTGCTGTGACTCTTGGGGAACTTAGAGTCAGTGCGAGTCCTCCTCAAACATAATGCCAATGTAGGCAAGGAAAGCCACCAAGGCTGGGCTGgtaccctgctaggtggtgcttccatgttggtgaatggtgcctacaggact Alignment from Exonerate_protein2genome CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACC-TTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gcattggtcctcttgtccgatgtattatagtaactgaaccattccctcagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCACTGGAGCTTGCTGTGACTCTTGGGGAACTTAGAGTCAGTGCGAGTCCTCCTCAAACATAATGCCAATGTAGGCAAGGAAAGCCACCAAGGCTGGGCTGgtaccctgctaggtggtgcttccatgttggtgaatggtgcctacaggact Alignment from Exonerate_coding2genome AAGCACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACC-TTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gcattggtcctcttgtccgatgtattatagtaactgaaccattccctCAGCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCACTGGAGCTTGCTGTGACTCTTGGGGAACTTAGAGTCAGTGCGAGTCCTCCTCAAACATAATGCCAATGTAGGCAAGGAAAGCCACCAAGGCTGGGCTGgtaccctgctaggtggtgcttccatgttggtgaatggtgcctacaggact Alignment from GeneWise CACGACATTGAGCAGGAGGACCCCCAAGGGCGAACCCCCCTGGAGCTTGCTGTGACC-TTGGGGAACTTGGAGTCTGTGAGAGTCCTCCTCCGACATAATGCCAACGTGGGCAAAGAGAGCCACCAGGGCTGGGCAG gcattggtcctcttgtccgatgtattatagtaactgaaccattccctcagCATGACATTGAGCAGGAGGACCCCCAAGGGCAGACCCCACTGGAGCTTGCTGTGACTCTTGGGGAACTTAGAGTCAGTGCGAGTCCTCCTCAAACATAATGCCAATGTAGGCAAGGAAAGCCACCAAGGCTGGGCTGgtaccctgctaggtggtgcttccatgttggtgaatggtgcctacaggact #### Ankrd1_ID7096_7 --> 0 - 0 Original Alignment CTTCTCAGCACAGCG-CTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGA ttcgcaatgatgattgttctccacttgtttcacctctatatttcttttagCTCCTCAGCACAGCGCTTGCATGTGGCAGTCAGGACTGACCATTACGAGTGCACTGAGCACCTCTTCACTAGCGAAACTGATCTCAACGCCAGGGACAGAgtaagtatttgacagatttgtgccaatgtcacctgctttgaagccaccca Alignment from CESAR CTTCTCAGCACAGCG-CTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGA ttcgcaatgatgattgttctccacttgtttcacctctatatttcttttagCTCCTCAGCACAGCGCTTGCATGTGGCAGTCAGGACTGACCATTACGAGTGCACTGAGCACCTCTTCACTAGCGAAACTGATCTCAACGCCAGGGACAGAgtaagtatttgacagatttgtgccaatgtcacctgctttgaagccaccca Alignment from Spaln_aa2Genome CAGCACAGCG------CTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGA ttcgcaatgatgattgttctccacttgtttcacctctatatttcttttagCTCCTCAGCACAGCGCTTGCATGTGGCAGTCAGGACTGACCATTACGAGTGCACTGAGCACCTCTTCACTAGCGAAACTGATCTCAACGCCAGGGACAGAgtaagtatttgacagatttgtgccaatgtcacctgctttgaagccaccca Alignment from Spaln_nt2Genome CTTCTCAGCACAGCGC-TGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGA ttcgcaatgatgattgttctccacttgtttcacctctatatttcttttagCTCCTCAGCACAGCGCTTGCATGTGGCAGTCAGGACTGACCATTACGAGTGCACTGAGCACCTCTTCACTAGCGAAACTGATCTCAACGCCAGGGACAGAgtaagtatttgacagatttgtgccaatgtcacctgctttgaagccaccca Alignment from Pairagon CTTCTCAGCACAGCGC-TGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGA ttcgcaatgatgattgttctccacttgtttcacctctatatttcttttagCTCCTCAGCACAGCGCTTGCATGTGGCAGTCAGGACTGACCATTACGAGTGCACTGAGCACCTCTTCACTAGCGAAACTGATCTCAACGCCAGGGACAGAgtaagtatttgacagatttgtgccaatgtcacctgctttgaagccaccca Alignment from Exonerate_protein2genome CTTCTCAGCACAGCG-CTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGA ttcgcaatgatgattgttctccacttgtttcacctctatatttcttttagCTCCTCAGCACAGCGCTTGCATGTGGCAGTCAGGACTGACCATTACGAGTGCACTGAGCACCTCTTCACTAGCGAAACTGATCTCAACGCCAGGGACAGAgtaagtatttgacagatttgtgccaatgtcacctgctttgaagccaccca Alignment from Exonerate_coding2genome CTTCTCAGCACAGCG-CTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGA ttcgcaatgatgattgttctccacttgtttcacctctatatttcttttagCTCCTCAGCACAGCGCTTGCATGTGGCAGTCAGGACTGACCATTACGAGTGCACTGAGCACCTCTTCACTAGCGAAACTGATCTCAACGCCAGGGACAGAgtaagtatttgacagatttgtgccaatgtcacctgctttgaagccaccca Alignment from GeneWise GCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGGCTGATCTCAATGCCAAGGACAGA ttcgcaatgatgattgttctccacttgtttcacctctatatttcttttagctcctcagCACAGCGCTTGCATGTGGCAGTCAGGACTGACCATTACGAGTGCACTGAGCACCTCTTCACTAGCGAAACTGATCTCAACGCCAGGGACAGAgtaagtatttgacagatttgtgccaatgtcacctgctttgaagccaccca #### Bbs1_ID718_16 --> 0 - 0 Original Alignment GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACC-TTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG aacctaggcttgtagctattaggggtggtatatatttttttgtatttcagGTTCCCTTGCTGGTACCAGGACTCAGTTATCCACTGGAAACCCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtaaacggctacttcaagggtacatggaactcagtggaggcagttgggtg Alignment from CESAR GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACC-TTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG aacctaggcttgtagctattaggggtggtatatatttttttgtatttcagGTTCCCTTGCTGGTACCAGGACTCAGTTATCCACTGGAAACCCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtaaacggctacttcaagggtacatggaactcagtggaggcagttgggtg Alignment from Spaln_aa2Genome GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACC-TTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG aacctaggcttgtagctattaggggtggtatatatttttttgtatttcagGTTCCCTTGCTGGTACCAGGACTCAGTTATCCACTGGAAACCcTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtaaacggctacttcaagggtacatggaactcagtggaggcagttgggtg Alignment from Spaln_nt2Genome GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGG-AAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG aacctaggcttgtagctattaggggtggtatatatttttttgtatttcagGTTCCCTTGCTGGTACCAGGACTCAGTTATCCACTGGAAACCCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtaaacggctacttcaagggtacatggaactcagtggaggcagttgggtg Alignment from Pairagon GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAA-CCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG aacctaggcttgtagctattaggggtggtatatatttttttgtatttcagGTTCCCTTGCTGGTACCAGGACTCAGTTATCCACTGGAAACCCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtaaacggctacttcaagggtacatggaactcagtggaggcagttgggtg Alignment from Exonerate_protein2genome GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACC-TTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG aacctaggcttgtagctattaggggtggtatatatttttttgtatttcagGTTCCCTTGCTGGTACCAGGACTCAGTTATCCACTGGAAACCCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtaaacggctacttcaagggtacatggaactcagtggaggcagttgggtg Alignment from Exonerate_coding2genome GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACC-TTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG aacctaggcttgtagctattaggggtggtatatatttttttgtatttcagGTTCCCTTGCTGGTACCAGGACTCAGTTATCCACTGGAAACCCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtaaacggctacttcaagggtacatggaactcagtggaggcagttgggtg Alignment from GeneWise GTTCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAA-ACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG aacctaggcttgtagctattaggggtggtatatatttttttgtatttcagGTTCCCTTGCTGGTACCAGGACTCAGTTATCCACTGGAAACCCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtaaacggctacttcaagggtacatggaactcagtggaggcagttgggtg #### Bbs1_ID729_5 --> 0 - 2 Original Alignment GACCAGATTGACCCCTTAACC-CTGAAGGAGATGCTGGAGGACATCag tggctgctgctagtgctcccaaactcaaatgttgtgtgtttactttttagGATCAT---GACCCCTTGACCCTTGAAAGATATGCTGGAAGATATCaggtaagtgttcacctttcctccttggtgcccccaaaaactcttcctaaggg Alignment from CESAR GACCAGATTGACCCCTTAACC-CTGAAGGAGATGCTGGAGGACATCag tggctgctgctagtgctcccaaactcaaatgttgtgtgtttactttttagGATCAT---GACCCCTTGACCCTTGAAAGATATGCTGGAAGATATCaggtaagtgttcacctttcctccttggtgcccccaaaaactcttcctaaggg Alignment from Spaln_aa2Genome GACCAGATTGACCCCTTAACC-CTGAAGGAGATGCTGGAGGACATCAG tggctgctgctagtgctcccaaactcaaatgttgtgtgtttactttttagGATCAT---GACCCCTTGACCcTTGAAAGATATGCTGGAAGATATCAGgtaagtgttcacctttcctccttggtgcccccaaaaactcttcctaaggg Alignment from Spaln_nt2Genome GACCAGATTGACCCCTTAACCCT-GAAGGAGATGCTGGAGGACATCAG tggctgctgctagtgctcccaaactcaaatgttgtgtgtttactttttagGATCA---TGACCCCTTGACCCTTGAAAGATATGCTGGAAGATATCAGgtaagtgttcacctttcctccttggtgcccccaaaaactcttcctaaggg Alignment from Pairagon GACCAGATTGACCCCTTAACCC-TGAAGGAGATGCTGGAGGACATCAG tggctgctgctagtgctcccaaactcaaatgttgtgtgtttactttttagGATCA---TGACCCCTTGACCCTTGAAAGATATGCTGGAAGATATCAGgtaagtgttcacctttcctccttggtgcccccaaaaactcttcctaaggg Alignment from Exonerate_protein2genome GACCAGATTGACCCCTTAACC-CTGAAGGAGATGCTGGAGGACATCAG tggctgctgctagtgctcccaaactcaaatgttgtgtgtttactttttagGATCAT---GACCCCTTGACCCTTGAAAGATATGCTGGAAGATATCAGgtaagtgttcacctttcctccttggtgcccccaaaaactcttcctaaggg Alignment from Exonerate_coding2genome GACCAGATTGACCCCTT tggctgctgctagtgctcccaaactcaaatgttgtgtgtttactttttaggatcatgaccccttgacccttgaaagatatgctggaagatatcaggtaagtgttcacctttcctccttggtgcccccaAAAACTCTTCCTAAGGG Alignment from GeneWise tggctgctgctagtgctcccaaactcaaatgttgtgtgtttactttttaggatcatgaccccttgacccttgaaagatatgctggaagatatcaggtaagtgttcacctttcctccttggtgcccccaaaaactcttcctaaggg #### Bbs1_ID732_2 --> 1 - 1 Original Alignment cAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCC-AACATCCACACCTTCTCCTCCTGCCTGt aatttatttcatcatggggcatatcttctctctctcttctccttttttaggAATGAGGCCAATTCCAAATGGCTGGATGCACACTATGACCCTATGGCTCAACATCCATACTTTCTCCTCCTGTCTGtgtgaggccccatgaatgacttgggacatctggattctatttcctgttttt Alignment from CESAR cAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCC-AACATCCACACCTTCTCCTCCTGCCTGt aatttatttcatcatggggcatatcttctctctctcttctccttttttaggAATGAGGCCAATTCCAAATGGCTGGATGCACACTATGACCCTATGGCTCAACATCCATACTTTCTCCTCCTGTCTGtgtgaggccccatgaatgacttgggacatctggattctactctgttcattg Alignment from Spaln_aa2Genome CAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCC-AACATCCACACCTTCTCCTCCTGCCTGT aatttatttcatcatggggcatatcttctctctctcttctccttttttagGAATGAGGCCAATTCCAAATGGCTGGATGCACACTATGACCCTATGGCTcAACATCCATACTTTCTCCTCCTGTCTGTgtgaggccccatgaatgacttgggacatctggattctatttcctgttttt Alignment from Spaln_nt2Genome CAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGC-CAACATCCACACCTTCTCCTCCTGCCTGT aatttatttcatcatggggcatatcttctctctctcttctccttttttagGAATGAGGCCAATTCCAAATGGCTGGATGCACACTATGACCCTATGGCTCAACATCCATACTTTCTCCTCCTGTCTGTgtgaggccccatgaatgacttgggacatctggattctatttcctgttttt Alignment from Pairagon CAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGC-CAACATCCACACCTTCTCCTCCTGCCTGT aatttatttcatcatggggcatatcttctctctctcttctccttttttagGAATGAGGCCAATTCCAAATGGCTGGATGCACACTATGACCCTATGGCTCAACATCCATACTTTCTCCTCCTGTCTGTgtgaggccccatgaatgacttgggacatctggattctatttcctgttttt Alignment from Exonerate_protein2genome CAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCC-AACATCCACACCTTCTCCTCCTGCCTGT aatttatttcatcatggggcatatcttctctctctcttctccttttttagGAATGAGGCCAATTCCAAATGGCTGGATGCACACTATGACCCTATGGCTCAACATCCATACTTTCTCCTCCTGTCTGTgtgaggccccatgaatgacttgggacatctggattctatttcctgttttt Alignment from Exonerate_coding2genome aatttatttcatcatggggcatatcttctctctctcttctccttttttaggaatgaggccaattccaaatggctggatgcacactatgaccctatggctcaacatccatactttctcctcctgtctgtgtgaggccccatgaatgacttgggacatctggattctatttcctgttttt Alignment from GeneWise AACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATG-GCCAACATCCACACCTTCTCCTCCTGCCTGT aatttatttcatcatggggcatatcttctctctctcttctccttttttaggAATGAGGCCAATTCCAAATGGCTGGATGCACACTATGACCCTATGGCTCAACATCCATACTTTCTCCTCCTGTCTGTgtgaggccccatgaatgacttgggacatctggattctatttcctgttttt #### Bscl2_ID2422_5 --> 0 - 0 Original Alignment GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTG-TTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG cactatcactgtattcaggcacccagaagttttaaattactttccatcagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGTTATTCTCCAGCCTCCTGCTGCTTTGGCTTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCACCACTAGAAATCTATACTGACTATAGGGAGAACTCAgtaagaggcagacaaccttgcaaagcaagtcctcaatgagccagaattgt Alignment from CESAR GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTG-TTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG cactatcactgtattcaggcacccagaagttttaaattactttccatcagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGTTATTCTCCAGCCTCCTGCTGCTTTGGCTTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCACCACTAGAAATCTATACTGACTATAGGGAGAACTCAgtaagaggcagacaaccttgcaaagcaagtcctcaatgagccagaattgt Alignment from Spaln_aa2Genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTG-TTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG cactatcactgtattcaggcacccagaagttttaaattactttccatcagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGTTATTCTCCAGCCTCCTGCTGcTTTGGCTTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCACCACTAGAAATCTATACTGACTATAGGGAGAACTCAgtaagaggcagacaaccttgcaaagcaagtcctcaatgagccagaattgt Alignment from Spaln_nt2Genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTG-TTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAAG---------------TAGAACTCTACTCTGACTATAGGGAGAATTCG cactatcactgtattcaggcacccagaagttttaaattactttccatcagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGTTATTCTCCAGCCTCCTGCTGCTTTGGCTTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCACCACTAGAAATCTATACTGACTATAGGGAGAACTCAgtaagaggcagacaaccttgcaaagcaagtcctcaatgagccagaattgt Alignment from Pairagon GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTG-TTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAAG---------------TAGAACTCTACTCTGACTATAGGGAGAATTCG cactatcactgtattcaggcacccagaagttttaaattactttccatcagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGTTATTCTCCAGCCTCCTGCTGCTTTGGCTTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCACCACTAGAAATCTATACTGACTATAGGGAGAACTCAgtaagaggcagacaaccttgcaaagcaagtcctcaatgagccagaattgt Alignment from Exonerate_protein2genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTG-TTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG cactatcactgtattcaggcacccagaagttttaaattactttccatcagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGTTATTCTCCAGCCTCCTGCTGCTTTGGCTTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCACCACTAGAAATCTATACTGACTATAGGGAGAACTCAgtaagaggcagacaaccttgcaaagcaagtcctcaatgagccagaattgt Alignment from Exonerate_coding2genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTG-TTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG cactatcactgtattcaggcacccagaagttttaaattactttccatcagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGTTATTCTCCAGCCTCCTGCTGCTTTGGCTTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCACCACTAGAAATCTATACTGACTATAGGGAGAACTCAgtaagaggcagacaaccttgcaaagcaagtcctcaatgagccagaattgt Alignment from GeneWise GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTG-CTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG cactatcactgtattcaggcacccagaagttttaaattactttccatcagGTAATGCTGCATTATTGCTCACAGCTGCTCCAAGTGCTTGACATACTGTTATTCTCCAGCCTCCTGCTGCTTTGGCTTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCACCACTAGAAATCTATACTGACTATAGGGAGAACTCAgtaagaggcagacaaccttgcaaagcaagtcctcaatgagccagaattgt #### Bscl2_ID2425_8 --> 0 - 1 Original Alignment GTTAATATCCGACAAAGG-GATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAg ttctggagaggggagtctaagctcacgggtttcctcttcatttttaatagGTCAATACCCGTCAAAGGCGATAACTCACACCATGGA------GACCGCATCTCACACCATCAGCCAggtaattaaattggttaatagaagtctggggggaaaacacaaaagagagtt Alignment from CESAR GTTAATATCCGACAAAGG-GATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAg ttctggagaggggagtctaagctcacgggtttcctcttcatttttaatagGTCAATACCCGTCAAAGGCGATAACTCACACCATGGAGAC------CGCATCTCACACCATCAGCCAggtaattaaattggttaatagaagtctggggggaaaacacaaaagagagtt Alignment from Spaln_aa2Genome GCAGGTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG ttctggagaggggagtctaagctcacgggtttcctcttcatttttaatagGTCAATACCCGTCAAA---GGCGATAACTCACACCATGGAGAC------CGCATCTCACACCATCAGCCAGgtaattaaattggttaatagaagtctggggggaaaacacaaaagagagtt Alignment from Spaln_nt2Genome GTTAATATCCGACAAAGG-GATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG ttctggagaggggagtctaagctcacgggtttcctcttcatttttaatagGTCAATACCCGTCAAAGGCGATAACTCACACCATGGAGAC------CGCATCTCACACCATCAGCCAGgtaattaaattggttaatagaagtctggggggaaaacacaaaagagagtt Alignment from Pairagon GTTAATATCCGACAAAGG-GATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG ttctggagaggggagtctaagctcacgggtttcctcttcatttttaatagGTCAATACCCGTCAAAGGCGATAACTCACACCATGGAGAC------CGCATCTCACACCATCAGCCAGgtaattaaattggttaatagaagtctggggggaaaacacaaaagagagtt Alignment from Exonerate_protein2genome GTTAATATCCGACAAAGG-GATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG ttctggagaggggagtctaagctcacgggtttcctcttcatttttaatagGTCAATACCCGTCAAAGGCGATAACTCACACCATGGA------GACCGCATCTCACACCATCAGCCAGgtaattaaattggttaatagaagtctggggggaaaacacaaaagagagtt Alignment from Exonerate_coding2genome ttctggagaggggagtctaagctcacgggtttcctcttcatttttaataggtcaatacccgtcaaaggcgataactcacaccatggagaccgcatctcacaccatcagccaggtaattaaattggttaatagaagtctggggggaaaacacaaaagagagtt Alignment from GeneWise GTTAATATCCGACAA-AGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG ttctggagaggggagtctaagctcacgggtttcctcttcatttttaatagGTCAATACCCGTCAAAGGCGATAACTCACACCATGGA------GACCGCATCTCACACCATCAGCCAGgtaattaaattggttaatagaagtctggggggaaaacacaaaagagagtt #### Bscl2_ID2427_10 --> 2 - 1 Original Alignment agGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAG-GAGGAGCAAGAGCCAGAGGCTAGTGATg cagtgccagagctctcccctctgtctcagcttgatctaaatgctttgcagagGGCCAACTGTCAGAAGAGGAGAAAGCAAAGAAGTGGCCCCTGAATGGAGAGCGAGGAGCGAGAGCCAGACGCCAGTGATggtcaaagtagtatatgtcatagacaggggtactgtgtggtggggaggtta Alignment from CESAR agGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAG-GAGGAGCAAGAGCCAGAGGCTAGTGATg cagtgccagagctctcccctctgtctcagcttgatctaaatgctttgcagagGGCCAACTGTCAGAAGAGGAGAAAGCAAAGAAGTGGCCCCTGAATGGAGAGCGAGGAGCGAGAGCCAGACGCCAGTGATggtcaaagtagtatatgtcatagacaggggtactgtgtggtggggaggtta Alignment from Spaln_aa2Genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAG-GAGGAGCAAGAGCCAGAGGCTAGTGATG cagtgccagagctctcccctctgtctcagcttgatctaaatgctttgcagAGGGCCAACTGTCAGAAGAGGAGAAAGCAAAGAAGTGGCCCCTGAATGGAGAGcGAGGAGCGAGAGCCAGACGCCAGTGATGgtcaaagtagtatatgtcatagacaggggtactgtgtggtggggaggtta Alignment from Spaln_nt2Genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAG-GAGGAGCAAGAGCCAGAGGCTAGTGATG cagtgccagagctctcccctctgtctcagcttgatctaaatgctttgcagAGGGCCAACTGTCAGAAGAGGAGAAAGCAAAGAAGTGGCCCCTGAATGGAGAGCGAGGAGCGAGAGCCAGACGCCAGTGATGgtcaaagtagtatatgtcatagacaggggtactgtgtggtggggaggtta Alignment from Pairagon AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAG-GAGGAGCAAGAGCCAGAGGCTAGTGATG cagtgccagagctctcccctctgtctcagcttgatctaaatgctttgcagAGGGCCAACTGTCAGAAGAGGAGAAAGCAAAGAAGTGGCCCCTGAATGGAGAGCGAGGAGCGAGAGCCAGACGCCAGTGATGgtcaaagtagtatatgtcatagacaggggtactgtgtggtggggaggtta Alignment from Exonerate_protein2genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAG-GAGGAGCAAGAGCCAGAGGCTAGTGATG cagtgccagagctctcccctctgtctcagcttgatctaaatgctttgcagAGGGCCAACTGTCAGAAGAGGAGAAAGCAAAGAAGTGGCCCCTGAATGGAGAGCGAGGAGCGAGAGCCAGACGCCAGTGATGgtcaaagtagtatatgtcatagacaggggtactgtgtggtggggaggtta Alignment from Exonerate_coding2genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAG-GAGGAGCAAGAGCCAGAGGCTAGTGATG cagtgccagagctctcccctctgtctcagcttgatctaaatgctttgcagAGGGCCAACTGTCAGAAGAGGAGAAAGCAAAGAAGTGGCCCCTGAATGGAGAGCGAGGAGCGAGAGCCAGACGCCAGTGATGgtcaaagtagtatatgtcatagacaggggtactgtgtggtggggaggtta Alignment from GeneWise AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAG-GAGGAGCAAGAGCCAGAGGCTAGTGATG cagtgccagagctctcccctctgtctcagcttgatctaaatgctttgcagAGGGCCAACTGTCAGAAGAGGAGAAAGCAAAGAAGTGGCCCCTGAATGGAGAGCGAGGAGCGAGAGCCAGACGCCAGTGATGgtcaaagtagtatatgtcatagacaggggtactgtgtggtggggaggtta #### Btaf1_ID7227_10 --> 0 - 0 Original Alignment ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTT-TGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA agtacagagtcaatattcacctattgcatcccattcccctgcccctatagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTCTGTGTTTTTGCATTGGACAGATTTGGAGACTTTGTTTCTGATGAAgttggtccagagtaaaactttgtcttgattatgggttcaatatcagctat Alignment from CESAR ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTT-TGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA agtacagagtcaatattcacctattgcatcccattcccctgcccctatagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTCTGTGTTTTTGCATTGGACAGATTTGGAGACTTTGTTTCTGATGAAgttggtccagagtaaaactttgtcttgattatgggttcaatatcagctat Alignment from Spaln_aa2Genome ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTT-TGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA agtacagagtcaatattcacctattgcatcccattcccctgcccctatagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTcTGTGTTTTTGCATTGGACAGATTTGGAGACTTTGTTTCTGATGAAgttggtccagagtaaaactttgtcttgattatgggttcaatatcagctat Alignment from Spaln_nt2Genome ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTT-TGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA agtacagagtcaatattcacctattgcatcccattcccctgcccctatagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTCTGTGTTTTTGCATTGGACAGATTTGGAGACTTTGTTTCTGATGAAgttggtccagagtaaaactttgtcttgattatgggttcaatatcagctat Alignment from Pairagon ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTT-TGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA agtacagagtcaatattcacctattgcatcccattcccctgcccctatagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTCTGTGTTTTTGCATTGGACAGATTTGGAGACTTTGTTTCTGATGAAgttggtccagagtaaaactttgtcttgattatgggttcaatatcagctat Alignment from Exonerate_protein2genome ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTT-TGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA agtacagagtcaatattcacctattgcatcccattcccctgcccctatagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTCTGTGTTTTTGCATTGGACAGATTTGGAGACTTTGTTTCTGATGAAgttggtccagagtaaaactttgtcttgattatgggttcaatatcagctat Alignment from Exonerate_coding2genome ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTT-TGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA agtacagagtcaatattcacctattgcatcccattcccctgcccctatagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTCTGTGTTTTTGCATTGGACAGATTTGGAGACTTTGTTTCTGATGAAgttggtccagagtaaaactttgtcttgattatgggttcaatatcagctat Alignment from GeneWise ATGATTCAGCAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTC-CTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA agtacagagtcaatattcacctattgcatcccattcccctgcccctatagATCATTCAACAGCATCAAGAGTGGTTGGAAGACTTAGTCATTAGACTCCTTCTGTGTTTTTGCATTGGACAGATTTGGAGACTTTGTTTCTGATGAAgttggtccagagtaaaactttgtcttgattatgggttcaatatcagctat #### Btaf1_ID7248_27 --> 0 - 2 Original Alignment GATGGTGTGAACTGGTTAGCCTTTCTC-AATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGag tggtccactcacactttacattaatttcgattgctgcctcatgtttctagGATGGTGTGAACTGGTTAGCCTTTCTCCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGaggtgagcgaggccaaaacttgaaaatgattgccttaaaacctgatcaatgt Alignment from CESAR GATGGTGTGAACTGGTTAGCCTTTCTC-AATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGag tggtccactcacactttacattaatttcgattgctgcctcatgtttctagGATGGTGTGAACTGGTTAGCCTTTCTCCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGaggtgagcgaggccaaaacttgaaaatgattgccttaaaacctgatcaatgt Alignment from Spaln_aa2Genome GATGGTGTGAACTGGTTAGCCTTTCTC-AATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAG tggtccactcacactttacattaatttcgattgctgcctcatgtttctagGATGGTGTGAACTGGTTAGCCTTTCTCcAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAGgtgagcgaggccaaaacttgaaaatgattgccttaaaacctgatcaatgt Alignment from Spaln_nt2Genome GATGGTGTGAACTGGTTAGCCTTTCT-CAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAG tggtccactcacactttacattaatttcgattgctgcctcatgtttctagGATGGTGTGAACTGGTTAGCCTTTCTCCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAGgtgagcgaggccaaaacttgaaaatgattgccttaaaacctgatcaatgt Alignment from Pairagon GATGGTGTGAACTGGTTAGCCTTTCT-CAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAG tggtccactcacactttacattaatttcgattgctgcctcatgtttctagGATGGTGTGAACTGGTTAGCCTTTCTCCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAGgtgagcgaggccaaaacttgaaaatgattgccttaaaacctgatcaatgt Alignment from Exonerate_protein2genome GATGGTGTGAACTGGTTAGCCTTTCTC-AATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAG tggtccactcacactttacattaatttcgattgctgcctcatgtttctagGATGGTGTGAACTGGTTAGCCTTTCTCCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAGgtgagcgaggccaaaacttgaaaatgattgccttaaaacctgatcaatgt Alignment from Exonerate_coding2genome GATGGTGTGAACTGGTTAGCCTTTCTC-AATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAG tggtccactcacactttacattaatttcgattgctgcctcatgtttctagGATGGTGTGAACTGGTTAGCCTTTCTCCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAGgtgagcgaggccaaaacttgaaaatgattgccttaaaacctgatcaatgt Alignment from GeneWise GATGGTGTGAACTGGTTAGCCTTT-CTCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAG tggtccactcacactttacattaatttcgattgctgcctcatgtttctagGATGGTGTGAACTGGTTAGCCTTTCTCCAATAAGTATAAGCTTCATGGAATTCTGTGTGATGACATGGGCTTAGGAAAAACATTACAGTCCATCTGCATTCTAGCAGGAGATCACTGTCAGAGgtgagcgaggccaaaacttgaaaatgattgccttaaaacctgatcaatgt #### Cabp2_ID288_3 --> 0 - 1 Original Alignment GATCGAGAGCTGAGACCA-GAAGAGATCGAAg ctaagatttggacaggggcagtagctccttgtttgtttttttacaaatagGACCGGGAG---AGACCACGAAAAAATTGAAggtagacattttattgtagttgaggtacagtgtatgctcaggattacaaga Alignment from CESAR GATCGAGAGCTGAGACCA-GAAGAGATCGAAg ctaagatttggacaggggcagtagctccttgtttgtttttttacaaatagGACCGGGAG---AGACCACGAAAAAATTGAAggtagacattttattgtagttgaggtacagtgtatgctcaggattacaaga Alignment from Spaln_aa2Genome GCTCGATCGAGAGCTGAGACCAGAAGAGATCGAAG ctaagatttggacaggggcagtagctccttgtttgtttttttacaaatagGACCGGGAGAGAC------CACGAAAAAATTGAAGgtagacattttattgtagttgaggtacagtgtatgctcaggattacaaga Alignment from Spaln_nt2Genome GATCGAGAGCTGAGACCA-GAAGAGATCGAAG ctaagatttggacaggggcagtagctccttgtttgtttttttacaaatagGACCGGGA---GAGACCACGAAAAAATTGAAGgtagacattttattgtagttgaggtacagtgtatgctcaggattacaaga Alignment from Pairagon ctaagatttggacaggggcagtagctccttgtttgtttttttacaaataggaccgggagagaccacgaaaaaattgaaggtagacattttattgtagttgaggtacagtgtatgctcaggattacaaga Alignment from Exonerate_protein2genome ctaagatttggacaggggcagtagctccttgtttgtttttttacaaataggaccgggagagaccacgaaaaaattgaaggtagacattttattgtagttgaggtacagtgtatgctcaggattacaaga Alignment from Exonerate_coding2genome ctaagatttggacaggggcagtagctccttgtttgtttttttacaaataggaccgggagagaccacgaaaaaattgaaggtagacattttattgtagttgaggtacagtgtatgctcaggattacaaga Alignment from GeneWise ctaagatttggacaggggcagtagctccttgtttgtttttttacaaataggaccgggagagaccacgaaaaaattgaaggtagacattttattgtagttgaggtacagtgtatgctcaggattacaaga #### Cabp2_ID290_5 --> 2 - 0 Original Alignment gtGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATG-ATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctctatttccaacttttttaataggtGGTGGAAAGGTTGATTTTGAAGTTTTCGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGCATTGGTGAGAGGGAACTTCAAGATGCTTTTAGGGAGgtgagccttaggtggtgggtggcagtggttggtggatttatggttcagca Alignment from CESAR gtGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATG-ATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctctatttccaacttttttaataggtGGTGGAAAGGTTGATTTTGAAGTTTTCGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGCATTGGTGAGAGGGAACTTCAAGATGCTTTTAGGGAGgtgagccttaggtggtgggtggcagtggttggtggatttatggttcagca Alignment from Spaln_aa2Genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATG-ATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctctatttccaacttttttaatagGTGGTGGAAAGGTTGATTTTGAAGTTTTCGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGcATTGGTGAGAGGGAACTTCAAGATGCTTTTAGGGAGgtgagccttaggtggtgggtggcagtggttggtggatttatggttcagca Alignment from Spaln_nt2Genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATG-ATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctctatttccaacttttttaatagGTGGTGGAAAGGTTGATTTTGAAGTTTTCGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGCATTGGTGAGAGGGAACTTCAAGATGCTTTTAGGGAGgtgagccttaggtggtgggtggcagtggttggtggatttatggttcagca Alignment from Pairagon GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATG-ATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctctatttccaacttttttaatagGTGGTGGAAAGGTTGATTTTGAAGTTTTCGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGCATTGGTGAGAGGGAACTTCAAGATGCTTTTAGGGAGgtgagccttaggtggtgggtggcagtggttggtggatttatggttcagca Alignment from Exonerate_protein2genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATG-ATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctctatttccaacttttttaatagGTGGTGGAAAGGTTGATTTTGAAGTTTTCGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGCATTGGTGAGAGGGAACTTCAAGATGCTTTTAGGGAGgtgagccttaggtggtgggtggcagtggttggtggatttatggttcagca Alignment from Exonerate_coding2genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATG-ATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctctatttccaacttttttaatagGTGGTGGAAAGGTTGATTTTGAAGTTTTCGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGCATTGGTGAGAGGGAACTTCAAGATGCTTTTAGGGAGgtgagccttaggtggtgggtggcagtggttggtggatttatggttcagca Alignment from GeneWise GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATG-ATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctctatttccaacttttttaatagGTGGTGGAAAGGTTGATTTTGAAGTTTTCGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGCATTGGTGAGAGGGAACTTCAAGATGCTTTTAGGGAGgtgagccttaggtggtgggtggcagtggttggtggatttatggttcagca #### Cabp2_ID291_6 --> 0 - 1 Original Alignment TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCT-CTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAg gagtggacccatggttcagtcagtgatctgaccttctttctgtttcacagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTTCAAGCAGCACTTAAAGCTCCTGCTGGGTGTACGTCTCAGCCAACGGGAAGTAGATGAAATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAggtaactttcccccttcttcttcccacatggcagcatttgtgaatggtgtt Alignment from CESAR TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCT-CTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAg gagtggacccatggttcagtcagtgatctgaccttctttctgtttcacagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTTCAAGCAGCACTTAAAGCTCCTGCTGGGTGTACGTCTCAGCCAACGGGAAGTAGATGAAATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAggtaactttcccccttcttcttcccacatggcagcatttgtgaatggtgtt Alignment from Spaln_aa2Genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCT-CTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gagtggacccatggttcagtcagtgatctgaccttctttctgtttcacagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTTCAAGCAGCACTTAAAGCTcCTGCTGGGTGTACGTCTCAGCCAACGGGAAGTAGATGAAATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAGgtaactttcccccttcttcttcccacatggcagcatttgtgaatggtgtt Alignment from Spaln_nt2Genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTC-TGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gagtggacccatggttcagtcagtgatctgaccttctttctgtttcacagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTTCAAGCAGCACTTAAAGCTCCTGCTGGGTGTACGTCTCAGCCAACGGGAAGTAGATGAAATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAGgtaactttcccccttcttcttcccacatggcagcatttgtgaatggtgtt Alignment from Pairagon TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCT-CTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gagtggacccatggttcagtcagtgatctgaccttctttctgtttcacagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTTCAAGCAGCACTTAAAGCTCCTGCTGGGTGTACGTCTCAGCCAACGGGAAGTAGATGAAATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAGgtaactttcccccttcttcttcccacatggcagcatttgtgaatggtgtt Alignment from Exonerate_protein2genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCT-CTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gagtggacccatggttcagtcagtgatctgaccttctttctgtttcacagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTTCAAGCAGCACTTAAAGCTCCTGCTGGGTGTACGTCTCAGCCAACGGGAAGTAGATGAAATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAGgtaactttcccccttcttcttcccacatggcagcatttgtgaatggtgtt Alignment from Exonerate_coding2genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCT-CTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAA gagtggacccatggttcagtcagtgatctgaccttctttctgtttcacagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTTCAAGCAGCACTTAAAGCTCCTGCTGGGTGTACGTCTCAGCCAACGGGAAGTAGATGAAATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAggtaactttcccccttcttcttcccacatggcagcatttgtgaatggtgtt Alignment from GeneWise TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAA-GCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAA---GAATTTGTTCGGATGATGTCTCGG gagtggacccatggttcagtcagtgatctgaccttctttctgtttcacagTTTGACACCAATGGTGATGGTTGCATCAGTGTAGGGGAGCTTCAAGCAGCACTTAAAGCTCCTGCTGGGTGTACGTCTCAGCCAACGGGAAGTAGATGAAATACTCCAAGACATTGACCTAAATGGAGATGGCCTGGTTGACTTTGAAGGTAACTTTCCCCCTTCTTCTTCCCACatggcagcatttgtgaatggtgtt #### Carns1_ID385_7 --> 0 - 1 Original Alignment GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGG-GTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCg cttggacagcttcttaccggctaggccccatgatttcacatatcttttagATAGTGTGTGGTGTGGGTCATGGGGACCGA---GTACGACACCACTACACTGTCCCAAGGACACTGAGGCGTGGCACTG---CAGTGTGGCCTGGAAGACGGGGCGCAGGTGGCACTTCTAGAGCAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTGGAGGCTGGATTGCGTGTGGAGCAACATGGTGGC---CAAGTGCACACTGACTTCCTTggtaagcccggatggacgacaaggctcagtctgatttacttggcggctggg Alignment from CESAR GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGG-GTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCg cttggacagcttcttaccggctaggccccatgatttcacatatcttttagATAGTGTGTGGTGTGGGTCATGGGGACCGA---GTACGACACCACTACACTGTCCCAAGGACACTGAGGCGTGGCACTG---CAGTGTGGCCTGGAAGACGGGGCGCAGGTGGCACTTCTAGAGCAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTGGAGGCTGGATTGCGTGTGGAGCAACATGGTGGC---CAAGTGCACACTGACTTCCTTggtaagcccggatggacgacaaggctcagtctgatttacttggcggctggg Alignment from Spaln_aa2Genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGG-GTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttggacagcttcttaccggctaggccccatgatttcacatatcttttagATAGTGTGTGGTGTGGGTCATGGGGACCGA---GTACGACACCACTACACTGTCCCAAGGACACTGAGGcGTGGCACTG---CAGTGTGGCCTGGAAGACGGGGCGCAGGTGGCACTTCTAGAGCAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTGGAGGCTGGATTGCGTGTGGAGCAACATGGTGGC---CAAGTGCACACTGACTTCCTTGgtaagcccggatggacgacaaggctcagtctgatttacttggcggctggg Alignment from Spaln_nt2Genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGG-GTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttggacagcttcttaccggctaggccccatgatttcacatatcttttagATAGTGTGTGGTGTGGGTCATGGGGACCGA---GTACGACACCACTACACTGTCCCAAGGACACTGAGGCGTGGCACTG---CAGTGTGGCCTGGAAGACGGGGCGCAGGTGGCACTTCTAGAGCAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTGGAGGCTGGATTGCGTGTGGAGCAACATGGTGG---CCAAGTGCACACTGACTTCCTTGgtaagcccggatggacgacaaggctcagtctgatttacttggcggctggg Alignment from Pairagon GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGG-GTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttggacagcttcttaccggctaggccccatgatttcacatatcttttagATAGTGTGTGGTGTGGGTCATGGGGACCGA---GTACGACACCACTACACTGTCCCAAGGACACTGAGGCGTGGCACTG---CAGTGTGGCCTGGAAGACGGGGCGCAGGTGGCACTTCTAGAGCAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTGGAGGCTGGATTGCGTGTGGAGCAACATGGTG---GCCAAGTGCACACTGACTTCCTTGgtaagcccggatggacgacaaggctcagtctgatttacttggcggctggg Alignment from Exonerate_protein2genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGG-GTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttggacagcttcttaccggctaggccccatgatttcacatatcttttagATAGTGTGTGGTGTGGGTCATGGGGACCGA---GTACGACACCACTACACTGTCCCAAGGACACTGAGGCGTGGCACTG---CAGTGTGGCCTGGAAGACGGGGCGCAGGTGGCACTTCTAGAGCAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTGGAGGCTGGATTGCGTGTGGAGCAACATGGTGGC---CAAGTGCACACTGACTTCCTTGgtaagcccggatggacgacaaggctcagtctgatttacttggcggctggg Alignment from Exonerate_coding2genome GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGG-GTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttggacagcttcttaccggctaggccccatgatttcacatatcttttagATAGTGTGTGGTGTGGGTCATGGGGACCGA---GTACGACACCACTACACTGTCCCAAGGACACTGAGGCGTGGCACTG---CAGTGTGGCCTGGAAGACGGGGCGCAGGTGGCACTTCTAGAGCAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTGGAGGCTGGATTGCGTGTGGAGCAACATGGTGGC---CAAGTGCACACTGACTTCCTTGgtaagcccggatggacgacaaggctcagtctgatttacttggcggctggg Alignment from GeneWise GTGGTGTGTGGCGTGGGCCGTGGGGATCGACCCGTGCGGCACCACTATACCCTGCCAAGGACACTGAGGGTGGCGCTGGCTCAGTGTGGCCTGGAAGAGGAGGCGCAGGTGGCGCTTCTGGAGCAGGGCATCAAAGAAGCAGCCGAAGGCGCGTTGGCCGCTGTGCTGGCCCTGGAGGCTGGACTGAGTGTGGAGCAGCGTGGTGGACGCCAAGTGCACACCGACTTCCTCG cttggacagcttcttaccggctaggccccatgatttcacatatcttttagATAGTGTGTGGTGTGGGTCATGGGGACCGA---GTACGACACCACTACACTGTCCCAAGGACACTGAGGC--GTGGCACTGCAGTGTGGCCTGGAAGACGGGGCGCAGGTGGCACTTCTAGAGCAGGGTATCAAAGAAGCAGCTGAAGGCAAGTTGGCTGCTGTGCTGGCCCTGGAGGCTGGATTGCGTGTGGAGCAACATGGTGGC---CAAGTGCACACTGACTTCCTTGgtaagcccggatggacgacaaggctcagtctgatttacttggcggctggg #### Carns1_ID386_6 --> 2 - 0 Original Alignment CGGCTGCCCTTACCAg gcGGTCCTGCACCTGGCCCTGAGCTGGCTGTG-CGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGGCTGCCCTTGCCAggtgaggtgtactcagagtgtcacctcttcatcaggaGGTCCTCCACCTGGGCCTGAGCTGGCTGTGCCACATGTGTGCAGTGGTGTGTCAGATCCAGGGTGACAGGCCCCTCCTGAGTAAGgtaagcggtgtatgccatcctgtacaacccccactcaggctagcccagtg Alignment from CESAR CGGCTGCCCTTACCAg gcGGTCCTGCACCTGGCCCTGAGCTGGCTGTG-CGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGGCTGCCCTTGCCAggtaaggtgtactcagagtgtcacctcttcatcaggaGGTCCTCCACCTGGGCCTGAGCTGGCTGTGCCACATGTGTGCAGTGGTGTGTCAGATCCAGGGTGACAGGCCCCTCCTGAGTAAGgtaagcggtgtatgccatcctgtacaacccccactcaggctagcccagtg Alignment from Spaln_aa2Genome CGGCTGCCCTTACCAG GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTG-CGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGGCTGCCCTTGCCAGgtgaggtgtactcagagtgtcacctcttcatcagGAGGTCCTCCACCTGGGCCTGAGCTGGCTGTGcCACATGTGTGCAGTGGTGTGTCAGATCCAGGGTGACAGGCCCCTCCTGAGTAAGgtaagcggtgtatgccatcctgtacaacccccactcaggctagcccagtg Alignment from Spaln_nt2Genome CGGCTGCCCTTACCAG GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTGCGT-ATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGGCTGCCCTTGCCAGgtgaggtgtactcagagtgtcacctcttcatcagGAGGTCCTCCACCTGGGCCTGAGCTGGCTGTGCCACATGTGTGCAGTGGTGTGTCAGATCCAGGGTGACAGGCCCCTCCTGAGTAAGgtaagcggtgtatgccatcctgtacaacccccactcaggctagcccagtg Alignment from Pairagon CGGCTGCCCTTACCAG GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTG-CGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGGCTGCCCTTGCCAGgtgaggtgtactcagagtgtcacctcttcatcagGAGGTCCTCCACCTGGGCCTGAGCTGGCTGTGCCACATGTGTGCAGTGGTGTGTCAGATCCAGGGTGACAGGCCCCTCCTGAGTAAGgtaagcggtgtatgccatcctgtacaacccccactcaggctagcccagtg Alignment from Exonerate_protein2genome CGGCTGCCCTTACCAG GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTG-CGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGGCTGCCCTTGCCAGgtgaggtgtactcagagtgtcacctcttcatcagGAGGTCCTCCACCTGGGCCTGAGCTGGCTGTGCCACATGTGTGCAGTGGTGTGTCAGATCCAGGGTGACAGGCCCCTCCTGAGTAAGgtaagcggtgtatgccatcctgtacaacccccactcaggctagcccagtg Alignment from Exonerate_coding2genome CGGCTGCCCTTACCAG GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTG-CGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGGCTGCCCTTGCCAGgtgaggtgtactcagagtgtcacctcttcatcagGAGGTCCTCCACCTGGGCCTGAGCTGGCTGTGCCACATGTGTGCAGTGGTGTGTCAGATCCAGGGTGACAGGCCCCTCCTGAGTAAGgtaagcggtgtatgccatcctgtacaacccccactcaggctagcccagtg Alignment from GeneWise CGGCTGCCCTTACCAG GCGGTCCTGCACCTGGCCCTGAGCTGGCTGTG-CGTATCTGTGCAGTGGTGTGTCGGATTCAGGGTGATAGGCCCCTACTGAGTAAG CGGCTGCCCTTGCCAGgtgaggtgtactcagagtgtcacctcttcatcagGAGGTCCTCCACCTGGGCCTGAGCTGGCTGTGCCACATGTGTGCAGTGGTGTGTCAGATCCAGGGTGACAGGCCCCTCCTGAGTAAGgtaagcggtgtatgccatcctgtacaacccccactcaggctagcccagtg #### Catsper1_ID926_3 --> 2 - 1 Original Alignment aaTGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTG-GAGTATTTTTATGACCCATGGAACAACCTGg gatgaggactataggctttgtcactgaaaatttgtttattttcattatagaaTGGTACTTCATGGTCTTAGACTCCATCTTCCTCACCATCTATGTATTAGAAGCAGTC---AAGCTGATTGCCTTGGGCTTGCGAGTACTTTTATGACCCATCGAATAACCTGggtaagtgggtatgggtgatttaggatggtcagggtacacagaatgtacaa Alignment from CESAR aaTGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTG-GAGTATTTTTATGACCCATGGAACAACCTGg gatgaggactataggctttgtcactgaaaatttgtttattttcattatagaaTGGTACTTCATGGTCTTAGACTCCATCTTCCTCACCATCTATGTATTAGAAGCAGTC---AAGCTGATTGCCTTGGGCTTGCGAGTACTTTTATGACCCATCGAATAACCTGggtaagtgggtatgggtgatttaggatggtcagggtacacagaatgtacaa Alignment from Spaln_aa2Genome AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTG-GAGTATTTTTATGACCCATGGAACAACCTGG gatgaggactataggctttgtcactgaaaatttgtttattttcattatagAATGGTACTTCATGGTCTTAGACTCCATCTTCCTCACCATCTATGTATTAGAAGCAGTC---AAGCTGATTGCCTTGGGCTTGcGAGTACTTTTATGACCCATCGAATAACCTGGgtaagtgggtatgggtgatttaggatggtcagggtacacagaatgtacaa Alignment from Spaln_nt2Genome AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTG-GAGTATTTTTATGACCCATGGAACAACCTGG gatgaggactataggctttgtcactgaaaatttgtttattttcattatagAATGGTACTTCATGGTCTTAGACTCCATCTTCCTCACCATCTATGTATTAGAAGCAG---TCAAGCTGATTGCCTTGGGCTTGCGAGTACTTTTATGACCCATCGAATAACCTGGgtaagtgggtatgggtgatttaggatggtcagggtacacagaatgtacaa Alignment from Pairagon AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTG-GAGTATTTTTATGACCCATGGAACAACCTGG gatgaggactataggctttgtcactgaaaatttgtttattttcattatagAATGGTACTTCATGGTCTTAGACTCCATCTTCCTCACCATCTATGTATTAGAAGCAG---TCAAGCTGATTGCCTTGGGCTTGCGAGTACTTTTATGACCCATCGAATAACCTGGgtaagtgggtatgggtgatttaggatggtcagggtacacagaatgtacaa Alignment from Exonerate_protein2genome AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTG-GAGTATTTTTATGACCCATGGAACAACCTGG gatgaggactataggctttgtcactgaaaatttgtttattttcattatagAATGGTACTTCATGGTCTTAGACTCCATCTTCCTCACCATCTATGTATTAGAAGCAGTC---AAGCTGATTGCCTTGGGCTTGCGAGTACTTTTATGACCCATCGAATAACCTGGgtaagtgggtatgggtgatttaggatggtcagggtacacagaatgtacaa Alignment from Exonerate_coding2genome AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGCCTG-GAGTATTTTTATGACCCATGGAACAACCTGG gatgaggactataggctttgtcactgaaaatttgtttattttcattatagAATGGTACTTCATGGTCTTAGACTCCATCTTCCTCACCATCTATGTATTAGAAGCAGTC---AAGCTGATTGCCTTGGGCTTGCGAGTACTTTTATGACCCATCGAATAACCTGGgtaagtgggtatgggtgatttaggatggtcagggtacacagaatgtacaa Alignment from GeneWise AATGGTACTTCATGGTCTTGGACTCCATCTTCCTCTCCATCTATGTACTAGAAGCAGTCCTCAAGCTAATTGCCCTGGGC-CTGGAGTATTTTTATGACCCATGGAACAACCTGG gatgaggactataggctttgtcactgaaaatttgtttattttcattatagAATGGTACTTCATGGTCTTAGACTCCATCTTCCTCACCATCTATGTATTAGAAGCAGTC---AAGCTGATTGCCTTGGGCTTGCGAGTACTTTTATGACCCATCGAATAACCTGGgtaagtgggtatgggtgatttaggatggtcagggtacacagaatgtacaa #### Catsper1_ID928_5 --> 1 - 1 Original Alignment cATCCTGACCAGCCTCCACGAAGTGGCCGGGACT-CTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCt ccccccttgcctcatcactaacttgacttaacttattgctatttttttagtATCCTGACTAGTGTCCATGAAGTAGCTGGGACCCCTTAGTGGGTCATTACCATCAATCACAGCCATCCTCACCCTCATGTTCACCTGCCTCtgtaagttgtacaacagagattaggcaataaccctgagtaggtcagatggt Alignment from CESAR cATCCTGACCAGCCTCCACGAAGTGGCCGGGACT-CTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCt ccccccttgcctcatcactaacttgacttaacttattgctatttttttagtATCCTGACTAGTGTCCATGAAGTAGCTGGGACCCCTTAGTGGGTCATTACCATCAATCACAGCCATCCTCACCCTCATGTTCACCTGCCTCtgtaagttgtacaacagagattaggcaataaccctgagtaggtcagatggt Alignment from Spaln_aa2Genome CATCCTGACCAGCCTCCACGAAGTGGCCGGGACT-CTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ccccccttgcctcatcactaacttgacttaacttattgctatttttttagTATCCTGACTAGTGTCCATGAAGTAGCTGGGACCcCTTAGTGGGTCATTACCATCAATCACAGCCATCCTCACCCTCATGTTCACCTGCCTCTgtaagttgtacaacagagattaggcaataaccctgagtaggtcagatggt Alignment from Spaln_nt2Genome CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTC-TGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ccccccttgcctcatcactaacttgacttaacttattgctatttttttagTATCCTGACTAGTGTCCATGAAGTAGCTGGGACCCCTTAGTGGGTCATTACCATCAATCACAGCCATCCTCACCCTCATGTTCACCTGCCTCTgtaagttgtacaacagagattaggcaataaccctgagtaggtcagatggt Alignment from Pairagon CATCCTGACCAGCCTCCACGAAGTGGCCGGGA-CTCTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ccccccttgcctcatcactaacttgacttaacttattgctatttttttagTATCCTGACTAGTGTCCATGAAGTAGCTGGGACCCCTTAGTGGGTCATTACCATCAATCACAGCCATCCTCACCCTCATGTTCACCTGCCTCTgtaagttgtacaacagagattaggcaataaccctgagtaggtcagatggt Alignment from Exonerate_protein2genome CATCCTGACCAGCCTCCACGAAGTGGCCGGGACT-CTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ccccccttgcctcatcactaacttgacttaacttattgctatttttttagTATCCTGACTAGTGTCCATGAAGTAGCTGGGACCCCTTAGTGGGTCATTACCATCAATCACAGCCATCCTCACCCTCATGTTCACCTGCCTCTgtaagttgtacaacagagattaggcaataaccctgagtaggtcagatggt Alignment from Exonerate_coding2genome CATCCTGACCAGCCTCCACGAAGTGGCCGGGACT-CTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ccccccttgcctcatcactaacttgacttaacttattgctatttttttagTATCCTGACTAGTGTCCATGAAGTAGCTGGGACCCCTTAGTGGGTCATTACCATCAATCACAGCCATCCTCACCCTCATGTTCACCTGCCTCTgtaagttgtacaacagagattaggcaataaccctgagtaggtcagatggt Alignment from GeneWise CATCCTGACCAGCCTCCACGAAGTGGCCGGGACT-CTGAGTGGATCTTTACCATCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ccccccttgcctcatcactaacttgacttaacttattgctatttttttagTATCCTGACTAGTGTCCATGAAGTAGCTGGGACCCCTTAGTGGGTCATTACCATCAATCACAGCCATCCTCACCCTCATGTTCACCTGCCTCTgtaagttgtacaacagagattaggcaataaccctgagtaggtcagatggt #### Catsper1_ID929_6 --> 2 - 1 Original Alignment tcCTCTTCTCTGTGGTTCTCCGAGCA-CTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAg gaaatctaatctggctacagtgatgatgtttttacttcttcccttccaagtcCTCTTCTCTGTGGTACTCCGAGCACCTCTTTCAGGATTCAGACCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACGATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAATAGGGCCCAAggtaagttaagctaaggatctagggtccaaatagcataccaatagcacata Alignment from CESAR tcCTCTTCTCTGTGGTTCTCCGAGCA-CTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAg gaaatctaatctggctacagtgatgatgtttttacttcttcccttccaagtcCTCTTCTCTGTGGTACTCCGAGCACCTCTTTCAGGATTCAGACCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACGATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAATAGGGCCCAAggtaagttaagctaaggatctagggtccaaatagcataccaatagcacata Alignment from Spaln_aa2Genome TCCTCTTCTCTGTGGTTCTCCGAGCA-CTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctggctacagtgatgatgtttttacttcttcccttccaagTCCTCTTCTCTGTGGTACTCCGAGCAcCTCTTTCAGGATTCAGACCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACGATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAATAGGGCCCAAGgtaagttaagctaaggatctagggtccaaatagcataccaatagcacata Alignment from Spaln_nt2Genome TCCTCTTCTCTGTGGTTCTCCGAGCAC-TGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctggctacagtgatgatgtttttacttcttcccttccaagTCCTCTTCTCTGTGGTACTCCGAGCACCTCTTTCAGGATTCAGACCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACGATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAATAGGGCCCAAGgtaagttaagctaaggatctagggtccaaatagcataccaatagcacata Alignment from Pairagon TCCTCTTCTCTGTGGTTCTCCGAGCA-CTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctggctacagtgatgatgtttttacttcttcccttccaagTCCTCTTCTCTGTGGTACTCCGAGCACCTCTTTCAGGATTCAGACCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACGATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAATAGGGCCCAAGgtaagttaagctaaggatctagggtccaaatagcataccaatagcacata Alignment from Exonerate_protein2genome TCCTCTTCTCTGTGGTTCTCCGAGCA-CTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctggctacagtgatgatgtttttacttcttcccttccaagTCCTCTTCTCTGTGGTACTCCGAGCACCTCTTTCAGGATTCAGACCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACGATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAATAGGGCCCAAGgtaagttaagctaaggatctagggtccaaatagcataccaatagcacata Alignment from Exonerate_coding2genome TCCTCTTCTCTGTGGTTCTCCGAGCA-CTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctggctacagtgatgatgtttttacttcttcccttccaagTCCTCTTCTCTGTGGTACTCCGAGCACCTCTTTCAGGATTCAGACCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACGATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAATAGGGCCCAAGgtaagttaagctaaggatctagggtccaaatagcataccaatagcacata Alignment from GeneWise TCCTCTTCTCTGTGGTTCTCCGA-GCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctggctacagtgatgatgtttttacttcttcccttccaagTCCTCTTCTCTGTGGTACTCCGAGCACCTCTTTCAGGATTCAGACCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACGATGCTCACCCTGGATGACTGGTCCCTTATCTACATAGAGAATAGGGCCCAAGgtaagttaagctaaggatctagggtccaaatagcataccaatagcacata #### Catsper1_ID930_7 --> 2 - 2 Original Alignment gcGCCTGGTACATCATACCGATCCTCATGATTTACATTGTC-ATCCAGTACTTCATCTTCCTCaa cacataaagagttggttacttctgctatgcaggcctacaatctcttacagctGCCTGGTACATCATACCAATCCTCATGATCTACATTGTTCATCCAATACTTTATCTTCCTCaagtgagtcactaacctgctccaatgtccacccactaagtctttagaggaca Alignment from CESAR gcGCCTGGTACATCATACCGATCCTCATGATTTACATTGTC-ATCCAGTACTTCATCTTCCTCaa cacataaagagttggttacttctgctatgcaggcctacaatctcttacagctGCCTGGTACATCATACCAATCCTCATGATCTACATTGTTCATCCAATACTTTATCTTCCTCaagtgagtcactaacctgctccaatgtccacccactaagtctttagaggaca Alignment from Spaln_aa2Genome GCGCCTGGTACATCATACCGATCCTCATGATTTACATTGTC-ATCCAGTACTTCATCTTCCTCAA cacataaagagttggttacttctgctatgcaggcctacaatctcttacagCTGCCTGGTACATCATACCAATCCTCATGATCTACATTGTTcATCCAATACTTTATCTTCCTCAAgtgagtcactaacctgctccaatgtccacccactaagtctttagaggaca Alignment from Spaln_nt2Genome GCGCCTGGTACATCATACCGATCCTCATGATTTACATTG-TCATCCAGTACTTCATCTTCCTCAA cacataaagagttggttacttctgctatgcaggcctacaatctcttacagCTGCCTGGTACATCATACCAATCCTCATGATCTACATTGTTCATCCAATACTTTATCTTCCTCAAgtgagtcactaacctgctccaatgtccacccactaagtctttagaggaca Alignment from Pairagon GCGCCTGGTACATCATACCGATCCTCATGATTTACATTG-TCATCCAGTACTTCATCTTCCTCAA cacataaagagttggttacttctgctatgcaggcctacaatctcttacagCTGCCTGGTACATCATACCAATCCTCATGATCTACATTGTTCATCCAATACTTTATCTTCCTCAAgtgagtcactaacctgctccaatgtccacccactaagtctttagaggaca Alignment from Exonerate_protein2genome GCGCCTGGTACATCATACCGATCCTCATGATTTACATTGTC-ATCCAGTACTTCATCTTCCTCAA cacataaagagttggttacttctgctatgcaggcctacaatctcttacagCTGCCTGGTACATCATACCAATCCTCATGATCTACATTGTTCATCCAATACTTTATCTTCCTCAAgtgagtcactaacctgctccaatgtccacccactaagtctttagaggaca Alignment from Exonerate_coding2genome GCGCCTGGTACATCATACCGATCCTCATGATTTACATTGTC-ATCCAGTACTTCATCTTCCTCAA cacataaagagttggttacttctgctatgcaggcctacaatctcttacagCTGCCTGGTACATCATACCAATCCTCATGATCTACATTGTTCATCCAATACTTTATCTTCCTCAAgtgagtcactaacctgctccaatgtccacccactaagtctttagaggaca Alignment from GeneWise GCGCCTGGTACATCATACCGATCCTCATGATTTACATT-GTCATCCAGTACTTCATCTTCCTCAA cacataaagagttggttacttctgctatgcaggcctacaatctcttacagCTGCCTGGTACATCATACCAATCCTCATGATCTACATTGTTCATCCAATACTTTATCTTCCTCAAgtgagtcactaacctgctccaatgtccacccactaagtctttagaggaca #### Catsper1_ID931_8 --> 1 - 0 Original Alignment cCTGGTGATTGCTGTCCTGGTAGAT-AACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggccccttccttggtcccccatttagggacctacttgttggatcttgtagcCTGGTGATTGCAGTTCTAGTAGATCAACTTCCTGATGGCACTGCTCAAAGGCCTGGAGAAAGTGAAGCTGGAGgtgagtcgccacattgggtgatgacagcaagggttggaagcacatacacc Alignment from CESAR cCTGGTGATTGCTGTCCTGGTAGAT-AACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggccccttccttggtcccccatttagggacctacttgttggatcttgtagcCTGGTGATTGCAGTTCTAGTAGATCAACTTCCTGATGGCACTGCTCAAAGGCCTGGAGAAAGTGAAGCTGGAGgtgagtcgccacattgggtgatgacagcaagggttggaagcacatacacc Alignment from Spaln_aa2Genome CCTGGTGATTGCTGTCCTGGTAGAT-AACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggccccttccttggtcccccatttagggacctacttgttggatcttgtagCCTGGTGATTGCAGTTCTAGTAGATcAACTTCCTGATGGCACTGCTCAAAGGCCTGGAGAAAGTGAAGCTGGAGgtgagtcgccacattgggtgatgacagcaagggttggaagcacatacacc Alignment from Spaln_nt2Genome CCTGGTGATTGCTGTCCTGGTAGAT-AACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggccccttccttggtcccccatttagggacctacttgttggatcttgtagCCTGGTGATTGCAGTTCTAGTAGATCAACTTCCTGATGGCACTGCTCAAAGGCCTGGAGAAAGTGAAGCTGGAGgtgagtcgccacattgggtgatgacagcaagggttggaagcacatacacc Alignment from Pairagon CCTGGTGATTGCTGTCCTGGTAGAT-AACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggccccttccttggtcccccatttagggacctacttgttggatcttgtagCCTGGTGATTGCAGTTCTAGTAGATCAACTTCCTGATGGCACTGCTCAAAGGCCTGGAGAAAGTGAAGCTGGAGgtgagtcgccacattgggtgatgacagcaagggttggaagcacatacacc Alignment from Exonerate_protein2genome CCTGGTGATTGCTGTCCTGGTAGAT-AACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggccccttccttggtcccccatttagggacctacttgttggatcttgtagCCTGGTGATTGCAGTTCTAGTAGATCAACTTCCTGATGGCACTGCTCAAAGGCCTGGAGAAAGTGAAGCTGGAGgtgagtcgccacattgggtgatgacagcaagggttggaagcacatacacc Alignment from Exonerate_coding2genome CCTGGTGATTGCTGTCCTGGTAGAT-AACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggccccttccttggtcccccatttagggacctacttgttggatcttgtagCCTGGTGATTGCAGTTCTAGTAGATCAACTTCCTGATGGCACTGCTCAAAGGCCTGGAGAAAGTGAAGCTGGAGgtgagtcgccacattgggtgatgacagcaagggttggaagcacatacacc Alignment from GeneWise CCTGGTGATTGCTGTCCTGGTAGAT-AACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAAGTGAAGCTGGAG ggccccttccttggtcccccatttagggacctacttgttggatcttgtagCCTGGTGATTGCAGTTCTAGTAGATCAACTTCCTGATGGCACTGCTCAAAGGCCTGGAGAAAGTGAAGCTGGAGgtgagtcgccacattgggtgatgacagcaagggttggaagcacatacacc #### Ccdc88b_ID1825_24 --> 1 - 1 Original Alignment gAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCAT-GGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAg cttagccttctctttcttttaaacttttcccacgtctttcgcctttgcaggAAGGGCAGCTGGTTGGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATCGGGGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACAGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAggtaacattaagcgtttaacagccaggatatccctgtgtgatgtttcacac Alignment from CESAR gAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCAT-GGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAg cttagccttctctttcttttaaacttttcccacgtctttcgcctttgcaggAAGGGCAGCTGGTTGGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATCGGGGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACAGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAggtaacattaagcgtttaacagccaggatatccctgtgtgatgtttcacac Alignment from Spaln_aa2Genome GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATGGG-GGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG cttagccttctctttcttttaaacttttcccacgtctttcgcctttgcagGAAGGGCAGCTGGTTGGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATCGGgGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACAGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAGgtaacattaagcgtttaacagccaggatatccctgtgtgatgtttcacac Alignment from Spaln_nt2Genome GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCATG-GGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG cttagccttctctttcttttaaacttttcccacgtctttcgcctttgcagGAAGGGCAGCTGGTTGGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATCGGGGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACAGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAGgtaacattaagcgtttaacagccaggatatccctgtgtgatgtttcacac Alignment from Pairagon GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCAT-GGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG cttagccttctctttcttttaaacttttcccacgtctttcgcctttgcagGAAGGGCAGCTGGTTGGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATCGGGGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACAGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAGgtaacattaagcgtttaacagccaggatatccctgtgtgatgtttcacac Alignment from Exonerate_protein2genome GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCAT-GGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG cttagccttctctttcttttaaacttttcccacgtctttcgcctttgcagGAAGGGCAGCTGGTTGGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATCGGGGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACAGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAGgtaacattaagcgtttaacagccaggatatccctgtgtgatgtttcacac Alignment from Exonerate_coding2genome GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCAT-GGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG cttagccttctctttcttttaaacttttcccacgtctttcgcctttgcagGAAGGGCAGCTGGTTGGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATCGGGGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACAGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAGgtaacattaagcgtttaacagccaggatatccctgtgtgatgtttcacac Alignment from GeneWise GAAGGGCAGCTGGCTGGCAGACAAGGTGAAGAGGCTCATTCGGCCCCGGCGGGAGGGGGCCCTCCAT-GGGGGGCCACGCCTGGGGGCCGATGGGGCTGGCAGCACGGAAAGCTTGGGGGGCCCCCTGGAGACGGAGCTCCCTGAGGGCAGGGAGGCAGATGGGACAG cttagccttctctttcttttaaacttttcccacgtctttcgcctttgcagGAAGGGCAGCTGGTTGGCAGACAAGGTGAAAAGGCTCATTCGGCCCCGGCGTGAGGGGGCCCTCCATCGGGGGGCCTCGCCTGGGGGCTGATGGGGCTGGCAGTACTGAAAGTTTGGGAGGCCCTCTAGAGACAGAGCTGCCTGAAGGCAGGGAGGCTGATGGGACAGgtaacattaagcgtttaacagccaggatatccctgtgtgatgtttcacac #### Ccdc88b_ID1827_22 --> 0 - 2 Original Alignment CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCC-GAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACct gGACCAGC ctggacagtccagggcctggtgttcaactaatttcttccttcgttctcagCTTCTGACGCAGCTCCGTACTGTACAAGAGGAGGAGAACAGGCAGCTTTTAGCACGAGGTGAAGGCTTTAAGTCGAACAAACAGGGAGCTGCAGGAGCGTAGTTTGGAGAGT---GACCCTCTGCATCGTGAGCAGCCAGAGTATctgtcagtgtacttagggtcaggaattttccaattgtatttcaggGACCAAC Alignment from CESAR CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCC-GAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACct gGACCAGC ctggacagtccagggcctggtgttcaactaatttcttccttcgttctcagCTTCTGACGCAGCTCCGTACTGTACAAGAGGAGGAGAACAGGCAGCTTTTAGCACGAGGTGAAGGCTTTAAGTCGAACAAACAGGGAGCTGCAGGAGCGTAGTTTGGAGAGT---GACCCTCTGCATCGTGAGCAGCCAGAGTATctgtcagtgtacttagggtcagccaaacctcctttccatgacaggGACCAAC Alignment from Spaln_aa2Genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCC-GAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GGACCAGC ctggacagtccagggcctggtgttcaactaatttcttccttcgttctcagCTTCTGACGCAGCTCCGTACTGTACAAGAGGAGGAGAACAGGCAGCTTTTAGCAcGAGGTGAAGGCTTTAAGTCGAACAAACAGGGAGCTGCAGGAGCGTAGTTTGGAGAGT---GACCCTCTGCATCGTGAGCAGCCAGAGTATCTgtcagtgtacttagggtcaggaattttccaattgtatttcagGGACCAAC Alignment from Spaln_nt2Genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGC-CGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GGACCAGC ctggacagtccagggcctggtgttcaactaatttcttccttcgttctcagCTTCTGACGCAGCTCCGTACTGTACAAGAGGAGGAGAACAGGCAGCTTTTAGCACGAGGTGAAGGCTTTAAGTCGAACAAACAGGGAGCTGCAGGAGCGTAGTTTGGAGA---GTGACCCTCTGCATCGTGAGCAGCCAGAGTATCTgtcagtgtacttagggtcaggaattttccaattgtatttcagGGACCAAC Alignment from Pairagon CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGC-CGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GGACCAGC ctggacagtccagggcctggtgttcaactaatttcttccttcgttctcagCTTCTGACGCAGCTCCGTACTGTACAAGAGGAGGAGAACAGGCAGCTTTTAGCACGAGGTGAAGGCTTTAAGTCGAACAAACAGGGAGCTGCAGGAGCGTAGTTTGGAGA---GTGACCCTCTGCATCGTGAGCAGCCAGAGTATCTgtcagtgtacttagggtcaggaattttccaattgtatttcagGGACCAAC Alignment from Exonerate_protein2genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCC-GAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GGACCAGC ctggacagtccagggcctggtgttcaactaatttcttccttcgttctcagCTTCTGACGCAGCTCCGTACTGTACAAGAGGAGGAGAACAGGCAGCTTTTAGCACGAGGTGAAGGCTTTAAGTCGAACAAACAGGGAGCTGCAGGAGCGTAGTTTGGAGAGT---GACCCTCTGCATCGTGAGCAGCCAGAGTATCTgtcagtgtacttagggtcaggaattttccaattgtatttcagGGACCAAC Alignment from Exonerate_coding2genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCC-GAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GGACCAGC ctggacagtccagggcctggtgttcaactaatttcttccttcgttctcagCTTCTGACGCAGCTCCGTACTGTACAAGAGGAGGAGAACAGGCAGCTTTTAGCACGAGGTGAAGGCTTTAAGTCGAACAAACAGGGAGCTGCAGGAGCGTAGTTTGGAGAGT---GACCCTCTGCATCGTGAGCAGCCAGAGTATCTgtcagtgtacttagggtcaggaattttccaattgtatttcagGGACCAAC Alignment from GeneWise CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTA-GCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCTG------------------------------------------GACCAGC ctggacagtccagggcctggtgttcaactaatttcttccttcgttctcagCTTCTGACGCAGCTCCGTACTGTACAAGAGGAGGAGAACAGGCAGCTTTTAGCACGAGGTGAAGGCTTTAAGTCGAACAAACAGGGAGCTGCAGGAGCGTAGTTTGGAGAGT---GACCCTCTGCATCGTGAGCAGCCAGAGTATCTGTCAGTGTACTTAGGGTCAGGAATTTTCCAATTGTATTTCAGGGACCAAC #### Ccdc88b_ID1828_21 --> 1 - 0 Original Alignment aGCTCAGATGCTACTGGCCGAGGTG-TCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtcaccgttcttcaattcagtatttaaaccactcttccttctcttctcagaGCCCAAATGTTACTGGCGGAGGTGCTCGCGAGGGTGTGGTGAGATCCAAGGAGAACGTGGGGAGCTGCGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGTGCACAACTTGAGATCCAGAGCCAACAGCTGCGTGTGCGGGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGCCTGACAACTCAGTGTGAAgtaagatacaacagtgtgtatgtggcctgccacactaatgatctctgcag Alignment from CESAR aGCTCAGATGCTACTGGCCGAGGTG-TCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtcaccgttcttcaattcagtatttaaaccactcttccttctcttctcagaGCCCAAATGTTACTGGCGGAGGTGCTCGCGAGGGTGTGGTGAGATCCAAGGAGAACGTGGGGAGCTGCGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGTGCACAACTTGAGATCCAGAGCCAACAGCTGCGTGTGCGGGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGCCTGACAACTCAGTGTGAAgtaagatacaacagtgtgtatgtggcctgccacactaatgatctctgcag Alignment from Spaln_aa2Genome AGCTCAGATGCTACTGGCCGAGGTG-TCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTG------CGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtcaccgttcttcaattcagtatttaaaccactcttccttctcttctcagAGCCCAAATGTTACTGGCGGAGGTGcTCGCGAGGGTGTGGTGAGATCCAAGGAGAACGTGGGGAGCTGCGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGTGCACAACTTGAGATCCAGAGCCAACAGCTGCGTGTGCGGGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGCCTGACAACTCAGTGTGAAgtaagatacaacagtgtgtatgtggcctgccacactaatgatctctgcag Alignment from Spaln_nt2Genome AGCTCAGATGCTACTGGCCGAGGTG-TCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGC------TGCGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtcaccgttcttcaattcagtatttaaaccactcttccttctcttctcagAGCCCAAATGTTACTGGCGGAGGTGCTCGCGAGGGTGTGGTGAGATCCAAGGAGAACGTGGGGAGCTGCGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGTGCACAACTTGAGATCCAGAGCCAACAGCTGCGTGTGCGGGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGCCTGACAACTCAGTGTGAAgtaagatacaacagtgtgtatgtggcctgccacactaatgatctctgcag Alignment from Pairagon AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGG------GAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtcaccgttcttcaattcagtatttaaaccactcttccttctcttctcagAGCCCAAATGTTACTGGCGGAGGTGCTC-----GCGAGGGTGTGGTGAGATCCAAGGAGAACGTGGGGAGCTGCGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGTGCACAACTTGAGATCCAGAGCCAACAGCTGCGTGTGCGGGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGCCTGACAACTCAGTGTGAAgtaagatacaacagtgtgtatgtggcctgccacactaatgatctctgcag Alignment from Exonerate_protein2genome AGCTCAGATGCTACTGGCCGAGGTG-TCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTG------CGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtcaccgttcttcaattcagtatttaaaccactcttccttctcttctcagAGCCCAAATGTTACTGGCGGAGGTGCTCGCGAGGGTGTGGTGAGATCCAAGGAGAACGTGGGGAGCTGCGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGTGCACAACTTGAGATCCAGAGCCAACAGCTGCGTGTGCGGGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGCCTGACAACTCAGTGTGAAgtaagatacaacagtgtgtatgtggcctgccacactaatgatctctgcag Alignment from Exonerate_coding2genome AGCTCAGATGCTACTGGCCGAGGTG-TCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTG------CGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtcaccgttcttcaattcagtatttaaaccactcttccttctcttctcagAGCCCAAATGTTACTGGCGGAGGTGCTCGCGAGGGTGTGGTGAGATCCAAGGAGAACGTGGGGAGCTGCGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGTGCACAACTTGAGATCCAGAGCCAACAGCTGCGTGTGCGGGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGCCTGACAACTCAGTGTGAAgtaagatacaacagtgtgtatgtggcctgccacactaatgatctctgcag Alignment from GeneWise AGCTCAGATGCTACTGGCCGAGGTG-TCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTG------CGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtcaccgttcttcaattcagtatttaaaccactcttccttctcttctcagAGCCCAAATGTTACTGGCGGAGGTGCTCGCGAGGGTGTGGTGAGATCCAAGGAGAACGTGGGGAGCTGCGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGTGCACAACTTGAGATCCAGAGCCAACAGCTGCGTGTGCGGGAGTCCAACCAACAGTTGGACCTGAGTGCCTGTCGCCTGACAACTCAGTGTGAAgtaagatacaacagtgtgtatgtggcctgccacactaatgatctctgcag #### Ccdc88b_ID1831_18 --> 0 - 0 Original Alignment AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAG-CGGGCTCAGGAGCACAGCAGTCGCCTGCAG ccaaggggtaacagggctcacaactttatttcttttctttctatttgcagAATGCCACACTGGTGGCAGAGAAAGCGGCTCTCCAGGGCCAGCTGCAGCATCTCGAGGGACAGCTGGGGAGCCTACAGGGCCGTGCACAGGAGTTGCTTCTACAGAGTCAACCGGGCTCAAGAGCACAGTAGTTGCCTGCAGgtaaggatgagctgcggtgtgaacatggcttcctgcttactaacatcaat Alignment from CESAR AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAG-CGGGCTCAGGAGCACAGCAGTCGCCTGCAG ccaaggggtaacagggctcacaactttatttcttttctttctatttgcagAATGCCACACTGGTGGCAGAGAAAGCGGCTCTCCAGGGCCAGCTGCAGCATCTCGAGGGACAGCTGGGGAGCCTACAGGGCCGTGCACAGGAGTTGCTTCTACAGAGTCAACCGGGCTCAAGAGCACAGTAGTTGCCTGCAGgtaaggatgagctgcggtgtgaacatggcttcctgcttactaacatcaat Alignment from Spaln_aa2Genome AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAG-CGGGCTCAGGAGCACAGCAGTCGCCTGCAG ccaaggggtaacagggctcacaactttatttcttttctttctatttgcagAATGCCACACTGGTGGCAGAGAAAGCGGCTCTCCAGGGCCAGCTGCAGCATCTCGAGGGACAGCTGGGGAGCCTACAGGGCCGTGCACAGGAGTTGCTTCTACAGAGTCAAcCGGGCTCAAGAGCACAGTAGTTGCCTGCAGgtaaggatgagctgcggtgtgaacatggcttcctgcttactaacatcaat Alignment from Spaln_nt2Genome AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGC-GGGCTCAGGAGCACAGCAGTCGCCTGCAG ccaaggggtaacagggctcacaactttatttcttttctttctatttgcagAATGCCACACTGGTGGCAGAGAAAGCGGCTCTCCAGGGCCAGCTGCAGCATCTCGAGGGACAGCTGGGGAGCCTACAGGGCCGTGCACAGGAGTTGCTTCTACAGAGTCAACCGGGCTCAAGAGCACAGTAGTTGCCTGCAGgtaaggatgagctgcggtgtgaacatggcttcctgcttactaacatcaat Alignment from Pairagon AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAG-CGGGCTCAGGAGCACAGCAGTCGCCTGCAG ccaaggggtaacagggctcacaactttatttcttttctttctatttgcagAATGCCACACTGGTGGCAGAGAAAGCGGCTCTCCAGGGCCAGCTGCAGCATCTCGAGGGACAGCTGGGGAGCCTACAGGGCCGTGCACAGGAGTTGCTTCTACAGAGTCAACCGGGCTCAAGAGCACAGTAGTTGCCTGCAGgtaaggatgagctgcggtgtgaacatggcttcctgcttactaacatcaat Alignment from Exonerate_protein2genome AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAG-CGGGCTCAGGAGCACAGCAGTCGCCTGCAG ccaaggggtaacagggctcacaactttatttcttttctttctatttgcagAATGCCACACTGGTGGCAGAGAAAGCGGCTCTCCAGGGCCAGCTGCAGCATCTCGAGGGACAGCTGGGGAGCCTACAGGGCCGTGCACAGGAGTTGCTTCTACAGAGTCAACCGGGCTCAAGAGCACAGTAGTTGCCTGCAGgtaaggatgagctgcggtgtgaacatggcttcctgcttactaacatcaat Alignment from Exonerate_coding2genome AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAG-CGGGCTCAGGAGCACAGCAGTCGCCTGCAG ccaaggggtaacagggctcacaactttatttcttttctttctatttgcagAATGCCACACTGGTGGCAGAGAAAGCGGCTCTCCAGGGCCAGCTGCAGCATCTCGAGGGACAGCTGGGGAGCCTACAGGGCCGTGCACAGGAGTTGCTTCTACAGAGTCAACCGGGCTCAAGAGCACAGTAGTTGCCTGCAGgtaaggatgagctgcggtgtgaacatggcttcctgcttactaacatcaat Alignment from GeneWise AATGCCACACTGGTGGCTGAGAAGGCGGCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGT-CAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG ccaaggggtaacagggctcacaactttatttcttttctttctatttgcagAATGCCACACTGGTGGCAGAGAAAGCGGCTCTCCAGGGCCAGCTGCAGCATCTCGAGGGACAGCTGGGGAGCCTACAGGGCCGTGCACAGGAGTTGCTTCTACAGAGTCAACCGGGCTCAAGAGCACAGTAGTTGCCTGCAGgtaaggatgagctgcggtgtgaacatggcttcctgcttactaacatcaat #### Ccdc88b_ID1833_16 --> 1 - 0 Original Alignment gTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCA-GCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtagtaaggactggttgttaagtcctgcttgtcctccactttctacaggTACCGGCATCTGGAGCAACGTCTAGAAGCCGAGCTGCAGGCGCACATCTGCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGTACGAGCCTTGCAGTTGGAGGAGGAGCTCATCGAGgtatccctgcccgacacaaaagtgctggcaaccttctacaattcatcaag Alignment from CESAR gTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCA-GCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtagtaaggactggttgttaagtcctgcttgtcctccactttctacaggTACCGGCATCTGGAGCAACGTCTAGAAGCCGAGCTGCAGGCGCACATCTGCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGTACGAGCCTTGCAGTTGGAGGAGGAGCTCATCGAGgtatccctgcccgacacaaaagtgctggcaaccttctacaattcatcaag Alignment from Spaln_aa2Genome GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCA-GCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtagtaaggactggttgttaagtcctgcttgtcctccactttctacagGTACCGGCATCTGGAGCAACGTCTAGAAGCCGAGCTGCAGGCGcACATCTGCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGTACGAGCCTTGCAGTTGGAGGAGGAGCTCATCGAGgtatccctgcccgacacaaaagtgctggcaaccttctacaattcatcaag Alignment from Spaln_nt2Genome GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCAG-CGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtagtaaggactggttgttaagtcctgcttgtcctccactttctacagGTACCGGCATCTGGAGCAACGTCTAGAAGCCGAGCTGCAGGCGCACATCTGCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGTACGAGCCTTGCAGTTGGAGGAGGAGCTCATCGAGgtatccctgcccgacacaaaagtgctggcaaccttctacaattcatcaag Alignment from Pairagon GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCA-GCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtagtaaggactggttgttaagtcctgcttgtcctccactttctacagGTACCGGCATCTGGAGCAACGTCTAGAAGCCGAGCTGCAGGCGCACATCTGCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGTACGAGCCTTGCAGTTGGAGGAGGAGCTCATCGAGgtatccctgcccgacacaaaagtgctggcaaccttctacaattcatcaag Alignment from Exonerate_protein2genome GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCA-GCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtagtaaggactggttgttaagtcctgcttgtcctccactttctacagGTACCGGCATCTGGAGCAACGTCTAGAAGCCGAGCTGCAGGCGCACATCTGCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGTACGAGCCTTGCAGTTGGAGGAGGAGCTCATCGAGgtatccctgcccgacacaaaagtgctggcaaccttctacaattcatcaag Alignment from Exonerate_coding2genome GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCA-GCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtagtaaggactggttgttaagtcctgcttgtcctccactttctacagGTACCGGCATCTGGAGCAACGTCTAGAAGCCGAGCTGCAGGCGCACATCTGCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGTACGAGCCTTGCAGTTGGAGGAGGAGCTCATCGAGgtatccctgcccgacacaaaagtgctggcaaccttctacaattcatcaag Alignment from GeneWise GTACCGGCATCTGGAGCAGCGTCTGGAAGCTGAGCTGCAGGCA-GCGTCTACCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGCTCGAGCCCTGCAGCTGGAGGAGGAGCTGATTCAG gagtagtaaggactggttgttaagtcctgcttgtcctccactttctacagGTACCGGCATCTGGAGCAACGTCTAGAAGCCGAGCTGCAGGCGCACATCTGCCAGTAAGGAGGAGGCACTGATGGAGCTCAAGGTACGAGCCTTGCAGTTGGAGGAGGAGCTCATCGAGgtatccctgcccgacacaaaagtgctggcaaccttctacaattcatcaag #### Ccdc88b_ID1837_12 --> 0 - 1 Original Alignment GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAG-AGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGg ggttaggcaagtttaatgaacaggacactctccctcctcttcccggacagGACCTGGACTCGCTGCGGCACCAGCTGGAGCAGCTAGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGCAGAAGTCTGGAGCCACCTCCAGGTTCCCCTGGGGAGggtgtgttaggtctagggtaagggaaaggatctgggcaggaaggcagcctt Alignment from CESAR GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAG-AGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGg ggttaggcaagtttaatgaacaggacactctccctcctcttcccggacagGACCTGGACTCGCTGCGGCACCAGCTGGAGCAGCTAGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGCAGAAGTCTGGAGCCACCTCCAGGTTCCCCTGGGGAGggtgtgttaggtctagggtaagggaaaggatctgggcaggaaggcagcctt Alignment from Spaln_aa2Genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAG-AGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaggcaagtttaatgaacaggacactctccctcctcttcccggacagGACCTGGACTCGCTGCGGCACCAGCTGGAGCAGCTAGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGcAGAAGTCTGGAGCCACCTCCAGGTTCCCCTGGGGAGGgtgtgttaggtctagggtaagggaaaggatctgggcaggaaggcagcctt Alignment from Spaln_nt2Genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAG-AGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaggcaagtttaatgaacaggacactctccctcctcttcccggacagGACCTGGACTCGCTGCGGCACCAGCTGGAGCAGCTAGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGCAGAAGTCTGGAGCCACCTCCAGGTTCCCCTGGGGAGGgtgtgttaggtctagggtaagggaaaggatctgggcaggaaggcagcctt Alignment from Pairagon GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAG-AGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaggcaagtttaatgaacaggacactctccctcctcttcccggacagGACCTGGACTCGCTGCGGCACCAGCTGGAGCAGCTAGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGCAGAAGTCTGGAGCCACCTCCAGGTTCCCCTGGGGAGGgtgtgttaggtctagggtaagggaaaggatctgggcaggaaggcagcctt Alignment from Exonerate_protein2genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAG-AGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaggcaagtttaatgaacaggacactctccctcctcttcccggacagGACCTGGACTCGCTGCGGCACCAGCTGGAGCAGCTAGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGCAGAAGTCTGGAGCCACCTCCAGGTTCCCCTGGGGAGGgtgtgttaggtctagggtaagggaaaggatctgggcaggaaggcagcctt Alignment from Exonerate_coding2genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAG-AGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaggcaagtttaatgaacaggacactctccctcctcttcccggacagGACCTGGACTCGCTGCGGCACCAGCTGGAGCAGCTAGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGCAGAAGTCTGGAGCCACCTCCAGGTTCCCCTGGGGAGGgtgtgttaggtctagggtaagggaaaggatctgggcaggaaggcagcctt Alignment from GeneWise GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTT-CAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaggcaagtttaatgaacaggacactctccctcctcttcccggacagGACCTGGACTCGCTGCGGCACCAGCTGGAGCAGCTAGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAGCAGAAGTCTGGAGCCACCTCCAGGTTCCCCTGGGGAGGgtgtgttaggtctagggtaagggaaaggatctgggcaggaaggcagcctt #### Ccdc88b_ID1839_10 --> 0 - 0 Original Alignment ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCA-CTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cctcacccctttgtcccataactcactaactcctgcaaatatttcaacagACTCAGGCACTCTCTGCCCAAGCAAAGTGTGCAGAACTCTGCCGTGAAGAAGCAGAGGCACCTAAAG---GAGGCTGGTCACTTGCCCCGCCTGCAGGAAGAACTTCGGCGCTGTCGTGAGAAGCTTCAGGCTGCAGAAGTCTTCAAGGGTCATTTGGAGgtgagctgggctatggcagagccagagacagactatttgataatgtcact Alignment from CESAR ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCA-CTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cctcacccctttgtcccataactcactaactcctgcaaatatttcaacagACTCAGGCACTCTCTGCCCAAGCAAAGTGTGCAGAACTCTGCCGTGAAGAAGCAGAGGCACCTAAAGGAG---GCTGGTCACTTGCCCCGCCTGCAGGAAGAACTTCGGCGCTGTCGTGAGAAGCTTCAGGCTGCAGAAGTCTTCAAGGGTCATTTGGAGgtgagctgggctatggcagagccagagacagactatttgataatgtcact Alignment from Spaln_aa2Genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCA-CTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cctcacccctttgtcccataactcactaactcctgcaaatatttcaacagACTCAGGCACTCTCTGCCCAAGCAAAGTGTGCAGAACTCTGCCGTGAAGAAGCAGAGGCAcCTAAAGGAG---GCTGGTCACTTGCCCCGCCTGCAGGAAGAACTTCGGCGCTGTCGTGAGAAGCTTCAGGCTGCAGAAGTCTTCAAGGGTCATTTGGAGgtgagctgggctatggcagagccagagacagactatttgataatgtcact Alignment from Spaln_nt2Genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cctcacccctttgtcccataactcactaactcctgcaaatatttcaacagACTCAGGCACTCTCTGCCCAAGCAAAGTGTGCAGAACTCTGCCGTGAAGAAGCAGAGGCAC--CTAAAGGAGGCTGGTCACTTGCCCCGCCTGCAGGAAGAACTTCGGCGCTGTCGTGAGAAGCTTCAGGCTGCAGAAGTCTTCAAGGGTCATTTGGAGgtgagctgggctatggcagagccagagacagactatttgataatgtcact Alignment from Pairagon ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cctcacccctttgtcccataactcactaactcctgcaaatatttcaacagACTCAGGCACTCTCTGCCCAAGCAAAGTGTGCAGAACTCTGCCGTGAAGAAGCAGAGGCAC--CTAAAGGAGGCTGGTCACTTGCCCCGCCTGCAGGAAGAACTTCGGCGCTGTCGTGAGAAGCTTCAGGCTGCAGAAGTCTTCAAGGGTCATTTGGAGgtgagctgggctatggcagagccagagacagactatttgataatgtcact Alignment from Exonerate_protein2genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCA-CTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cctcacccctttgtcccataactcactaactcctgcaaatatttcaacagACTCAGGCACTCTCTGCCCAAGCAAAGTGTGCAGAACTCTGCCGTGAAGAAGCAGAGGCACCTAAAGGAG---GCTGGTCACTTGCCCCGCCTGCAGGAAGAACTTCGGCGCTGTCGTGAGAAGCTTCAGGCTGCAGAAGTCTTCAAGGGTCATTTGGAGgtgagctgggctatggcagagccagagacagactatttgataatgtcact Alignment from Exonerate_coding2genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCA-CTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cctcacccctttgtcccataactcactaactcctgcaaatatttcaacagACTCAGGCACTCTCTGCCCAAGCAAAGTGTGCAGAACTCTGCCGTGAAGAAGCAGAGGCACCTAAAGGAG---GCTGGTCACTTGCCCCGCCTGCAGGAAGAACTTCGGCGCTGTCGTGAGAAGCTTCAGGCTGCAGAAGTCTTCAAGGGTCATTTGGAGgtgagctgggctatggcagagccagagacagactatttgataatgtcact Alignment from GeneWise ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGCGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cctcacccctttgtcccataactcactaactcctgcaaatatttcaacagACTCAGGCACTCTCTGCCCAAGCAAAGTGTGCAGAACTCTGCCGTGAAGAAGCAGAGGCACCTAAAG--GAGGCTGGTCACTTGCCCCGCCTGCAGGAAGAACTTCGGCGCTGTCGTGAGAAGCTTCAGGCTGCAGAAGTCTTCAAGGGTCATTTGGAGgtgagctgggctatggcagagccagagacagactatttgataatgtcact #### Ccdc88b_ID1840_9 --> 1 - 0 Original Alignment gGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGC-TTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagactctgcagttggaggacatcttttcctcttcgttgcacgtagaGAAGAGAAGGCTGAGCAGCTGCTAGACTCCCATGCAGAGGTTCAG---CTTGGATGCCGAAATTCGAAGACTTCGCCAGGAGgtaaactctatcttcctcccctaatacagcctccacaacactctatattg Alignment from CESAR gGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagactctgcagttggaggacatcttttcctcttcgttgcacgtagaGAAGAGAAGGCTGAGCAGCTGCTAGACTCCCATGCAGAGGTTC--AGCTTGGATGCCGAAATTCGAAGACTTCGCCAGGAGgtaaactctatcttcctcccctaatacagcctccacaacactctatattg Alignment from Spaln_aa2Genome GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagactctgcagttggaggacatcttttcctcttcgttgcacgtagAGAAGAGAAGGCTGAGCAGCTGCTAGACTCCCATGCAGAGGTTCAGC--TTGGATGCCGAAATTCGAAGACTTCGCCAGGAGgtaaactctatcttcctcccctaatacagcctccacaacactctatattg Alignment from Spaln_nt2Genome GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagactctgcagttggaggacatcttttcctcttcgttgcacgtagAGAAGAGAAGGCTGAGCAGCTGCTAGACTCCCATGCAGAGGTTCA--GCTTGGATGCCGAAATTCGAAGACTTCGCCAGGAGgtaaactctatcttcctcccctaatacagcctccacaacactctatattg Alignment from Pairagon GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagactctgcagttggaggacatcttttcctcttcgttgcacgtagAGAAGAGAAGGCTGAGCAGCTGCTAGACTCCCATGCAGAGGTTCA--GCTTGGATGCCGAAATTCGAAGACTTCGCCAGGAGgtaaactctatcttcctcccctaatacagcctccacaacactctatattg Alignment from Exonerate_protein2genome GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAG-GGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagactctgcagttggaggacatcttttcctcttcgttgcacgtagAGAAGAGAAGGCTGAGCAGCTGCTAGACTCCCATGCAGAGGTTCAGC---TTGGATGCCGAAATTCGAAGACTTCGCCAGGAGgtaaactctatcttcctcccctaatacagcctccacaacactctatattg Alignment from Exonerate_coding2genome GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAG-GGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagactctgcagttggaggacatcttttcctcttcgttgcacgtagAGAAGAGAAGGCTGAGCAGCTGCTAGACTCCCATGCAGAGGTTCAGC---TTGGATGCCGAAATTCGAAGACTTCGCCAGGAGgtaaactctatcttcctcccctaatacagcctccacaacactctatattg Alignment from GeneWise GGAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCGAGGTGCAGGGCTTGGAGGCTGAAATTCGAAGGCTCCGCCAGGAG tgggcagactctgcagttggaggacatcttttcctcttcgttgcacgtagAGAAGAGAAGGCTGAGCAGCTGCTAGACTCCCATGCAGAGGTTCAGC--TTGGATGCCGAAATTCGAAGACTTCGCCAGGAGgtaaactctatcttcctcccctaatacagcctccacaacactctatattg #### Ccdc88b_ID1847_2 --> 0 - 2 Original Alignment GCACTGGGACTGGCTGGGCTGGTGGGGGAG-GCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCat gcctggtattgtgtgtttgcctccctcccgtttttccttcttgtctccagGCTTTGGGTTTGGCTGGGCTCGTGGGCGAGCGCAGAAGAATCAGCAGGAGGAACTGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACGGAAAAAAGATCCCTACGGTTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGACATTatgtacctgacacagggaagctgagttgggggggttggccatgaatgctagg Alignment from CESAR GCACTGGGACTGGCTGGGCTGGTGGGGGAG-GCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCat gcctggtattgtgtgtttgcctccctcccgtttttccttcttgtctccagGCTTTGGGTTTGGCTGGGCTCGTGGGCGAGCGCAGAAGAATCAGCAGGAGGAACTGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACGGAAAAAAGATCCCTACGGTTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGACATTatgtacctgacacagggaagctgagttgggggggttggccatgaatgctagg Alignment from Spaln_aa2Genome GCACTGGGACTGGCTGGGCTGGTGGGGGAG-GCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT gcctggtattgtgtgtttgcctccctcccgtttttccttcttgtctccagGCTTTGGGTTTGGCTGGGCTCGTGGGCGAGcGCAGAAGAATCAGCAGGAGGAACTGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACGGAAAAAAGATCCCTACGGTTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGACATTATgtacctgacacagggaagctgagttgggggggttggccatgaatgctagg Alignment from Spaln_nt2Genome GCACTGGGACTGGCTGGGCTGGTGGGGGAG-GCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT gcctggtattgtgtgtttgcctccctcccgtttttccttcttgtctccagGCTTTGGGTTTGGCTGGGCTCGTGGGCGAGCGCAGAAGAATCAGCAGGAGGAACTGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACGGAAAAAAGATCCCTACGGTTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGACATTATgtacctgacacagggaagctgagttgggggggttggccatgaatgctagg Alignment from Pairagon GCACTGGGACTGGCTGGGCTGGTGGGGGAG-GCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT gcctggtattgtgtgtttgcctccctcccgtttttccttcttgtctccagGCTTTGGGTTTGGCTGGGCTCGTGGGCGAGCGCAGAAGAATCAGCAGGAGGAACTGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACGGAAAAAAGATCCCTACGGTTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGACATTATgtacctgacacagggaagctgagttgggggggttggccatgaatgctagg Alignment from Exonerate_protein2genome GCACTGGGACTGGCTGGGCTGGTGGGGGAG-GCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT gcctggtattgtgtgtttgcctccctcccgtttttccttcttgtctccagGCTTTGGGTTTGGCTGGGCTCGTGGGCGAGCGCAGAAGAATCAGCAGGAGGAACTGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACGGAAAAAAGATCCCTACGGTTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGACATTATgtacctgacacagggaagctgagttgggggggttggccatgaatgctagg Alignment from Exonerate_coding2genome GCACTGGGACTGGCTGGGCTGGTGGGGGAG-GCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT gcctggtattgtgtgtttgcctccctcccgtttttccttcttgtctccagGCTTTGGGTTTGGCTGGGCTCGTGGGCGAGCGCAGAAGAATCAGCAGGAGGAACTGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACGGAAAAAAGATCCCTACGGTTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGACATTATgtacctgacacagggaagctgagttgggggggttggccatgaatgctagg Alignment from GeneWise GCACTGGGACTGGCTGGGCTGGTGGGGGAG-GCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT gcctggtattgtgtgtttgcctccctcccgtttttccttcttgtctccagGCTTTGGGTTTGGCTGGGCTCGTGGGCGAGCGCAGAAGAATCAGCAGGAGGAACTGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACGGAAAAAAGATCCCTACGGTTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGACATTATgtacctgacacagggaagctgagttgggggggttggccatgaatgctagg #### Ccnj_ID8043_4 --> 2 - 2 Original Alignment atTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACG-AGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGct tggcaaattaagtgtttcattgttaagacttgttttctgaatatctctagatTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCTGCATGTGTGGCCTCTTCGAGAATTATACTTCGCCTGTCTCCAACATGGCCAACACAGACTACACTGTTTCACTGCCTATTCTTGGGCCTTCTTGGTGCAGTGTATCGAACGGTTATTGctgtgagtagagcctcatagcccaagcaaccatttgccatcaggcagactat Alignment from CESAR atTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACG-AGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGct tggcaaattaagtgtttcattgttaagacttgttttctgaatatctctagatTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCTGCATGTGTGGCCTCTTCGAGAATTATACTTCGCCTGTCTCCAACATGGCCAACACAGACTACACTGTTTCACTGCCTATTCTTGGGCCTTCTTGGTGCAGTGTATCGAACGGTTATTGctgtgagtagagcctcatagcccaagcaaccatttgccatcaggcagactat Alignment from Spaln_aa2Genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACG-AGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tggcaaattaagtgtttcattgttaagacttgttttctgaatatctctagATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCTGCATGTGTGGCCTCTTCGAGAATTATACTTCGCCTGTCTCCAACATGGCCAACAcAGACTACACTGTTTCACTGCCTATTCTTGGGCCTTCTTGGTGCAGTGTATCGAACGGTTATTGCTgtgagtagagcctcatagcccaagcaaccatttgccatcaggcagactat Alignment from Spaln_nt2Genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACG-AGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tggcaaattaagtgtttcattgttaagacttgttttctgaatatctctagATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCTGCATGTGTGGCCTCTTCGAGAATTATACTTCGCCTGTCTCCAACATGGCCAACACAGACTACACTGTTTCACTGCCTATTCTTGGGCCTTCTTGGTGCAGTGTATCGAACGGTTATTGCTgtgagtagagcctcatagcccaagcaaccatttgccatcaggcagactat Alignment from Pairagon ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACG-AGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tggcaaattaagtgtttcattgttaagacttgttttctgaatatctctagATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCTGCATGTGTGGCCTCTTCGAGAATTATACTTCGCCTGTCTCCAACATGGCCAACACAGACTACACTGTTTCACTGCCTATTCTTGGGCCTTCTTGGTGCAGTGTATCGAACGGTTATTGCTgtgagtagagcctcatagcccaagcaaccatttgccatcaggcagactat Alignment from Exonerate_protein2genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACG-AGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tggcaaattaagtgtttcattgttaagacttgttttctgaatatctctagATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCTGCATGTGTGGCCTCTTCGAGAATTATACTTCGCCTGTCTCCAACATGGCCAACACAGACTACACTGTTTCACTGCCTATTCTTGGGCCTTCTTGGTGCAGTGTATCGAACGGTTATTGCTgtgagtagagcctcatagcccaagcaaccatttgccatcaggcagactat Alignment from Exonerate_coding2genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCCACG-AGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tggcaaattaagtgtttcattgttaagacttgttttctgaatatctctagATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCTGCATGTGTGGCCTCTTCGAGAATTATACTTCGCCTGTCTCCAACATGGCCAACACAGACTACACTGTTTCACTGCCTATTCTTGGGCCTTCTTGGTGCAGTGTATCGAACGGTTATTGCTgtgagtagagcctcatagcccaagcaaccatttgccatcaggcagactat Alignment from GeneWise ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTGTCTCCAACGTGGCCC-ACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT tggcaaattaagtgtttcattgttaagacttgttttctgaatatctctagATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCTGCATGTGTGGCCTCTTCGAGAATTATACTTCGCCTGTCTCCAACATGGCCAACACAGACTACACTGTTTCACTGCCTATTCTTGGGCCTTCTTGGTGCAGTGTATCGAACGGTTATTGCTgtgagtagagcctcatagcccaagcaaccatttgccatcaggcagactat #### Cdc42bpg_ID1575_5 --> 0 - 2 Original Alignment TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCC-CAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACag gttgtcataagctgtaggattggatctacacagccttttttatttttcagTACCTGCTGATGGACTTCTATGCTGGTGGTGACCTTCTAACATTGCTGAGCCGCTTTGAAGACCGACTCCCACCTGAGCTGGCCCCAGATCTATTTGGCTGAGATGGTGCTGGCCATTCACTCCCTGCACCAGCTGGGCTATGCCCACaggtaagcaagatagtgtgtcgttgggattcttggatcatgcttttcattca Alignment from CESAR TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCC-CAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACag gttgtcataagctgtaggattggatctacacagccttttttatttttcagTACCTGCTGATGGACTTCTATGCTGGTGGTGACCTTCTAACATTGCTGAGCCGCTTTGAAGACCGACTCCCACCTGAGCTGGCCCCAGATCTATTTGGCTGAGATGGTGCTGGCCATTCACTCCCTGCACCAGCTGGGCTATGCCCACaggtaagcaagatagtgtgtcgttgggattcttggatcatgcttttcattca Alignment from Spaln_aa2Genome TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCC-CAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACAG gttgtcataagctgtaggattggatctacacagccttttttatttttcagTACCTGCTGATGGACTTCTATGCTGGTGGTGACCTTCTAACATTGCTGAGCCGCTTTGAAGACCGACTCCCACCTGAGCTGGCCcCAGATCTATTTGGCTGAGATGGTGCTGGCCATTCACTCCCTGCACCAGCTGGGCTATGCCCACAGgtaagcaagatagtgtgtcgttgggattcttggatcatgcttttcattca Alignment from Spaln_nt2Genome TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGG-CCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACAG gttgtcataagctgtaggattggatctacacagccttttttatttttcagTACCTGCTGATGGACTTCTATGCTGGTGGTGACCTTCTAACATTGCTGAGCCGCTTTGAAGACCGACTCCCACCTGAGCTGGCCCCAGATCTATTTGGCTGAGATGGTGCTGGCCATTCACTCCCTGCACCAGCTGGGCTATGCCCACAGgtaagcaagatagtgtgtcgttgggattcttggatcatgcttttcattca Alignment from Pairagon TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGG-CCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACAG gttgtcataagctgtaggattggatctacacagccttttttatttttcagTACCTGCTGATGGACTTCTATGCTGGTGGTGACCTTCTAACATTGCTGAGCCGCTTTGAAGACCGACTCCCACCTGAGCTGGCCCCAGATCTATTTGGCTGAGATGGTGCTGGCCATTCACTCCCTGCACCAGCTGGGCTATGCCCACAGgtaagcaagatagtgtgtcgttgggattcttggatcatgcttttcattca Alignment from Exonerate_protein2genome TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCC-CAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACAG gttgtcataagctgtaggattggatctacacagccttttttatttttcagTACCTGCTGATGGACTTCTATGCTGGTGGTGACCTTCTAACATTGCTGAGCCGCTTTGAAGACCGACTCCCACCTGAGCTGGCCCCAGATCTATTTGGCTGAGATGGTGCTGGCCATTCACTCCCTGCACCAGCTGGGCTATGCCCACAGgtaagcaagatagtgtgtcgttgggattcttggatcatgcttttcattca Alignment from Exonerate_coding2genome TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTGGCC-CAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACAG gttgtcataagctgtaggattggatctacacagccttttttatttttcagTACCTGCTGATGGACTTCTATGCTGGTGGTGACCTTCTAACATTGCTGAGCCGCTTTGAAGACCGACTCCCACCTGAGCTGGCCCCAGATCTATTTGGCTGAGATGGTGCTGGCCATTCACTCCCTGCACCAGCTGGGCTATGCCCACAGgtaagcaagatagtgtgtcgttgggattcttggatcatgcttttcattca Alignment from GeneWise TACCTGGTGATGGACTACTATGCTGGCGGGGACCTTCTCACGCTGCTGAGCCGCTTTGAGGACCGCCTCCCACCTGAGCTG-GCCCAGTTCTATCTGGCTGAGATGGTTCTGGCCATCCACTCACTGCACCAGCTGGGCTATGTCCACAG gttgtcataagctgtaggattggatctacacagccttttttatttttcagTACCTGCTGATGGACTTCTATGCTGGTGGTGACCTTCTAACATTGCTGAGCCGCTTTGAAGACCGACTCCCACCTGAGCTGGCCCCAGATCTATTTGGCTGAGATGGTGCTGGCCATTCACTCCCTGCACCAGCTGGGCTATGCCCACAGgtaagcaagatagtgtgtcgttgggattcttggatcatgcttttcattca #### Cdc42bpg_ID1576_6 --> 1 - 0 Original Alignment gGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGAC-TTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG cacacacagacacacctacaccaagcacactatcgcctcttgtcttgcagaGATGTGAAGCCAGACAACATTCTACTGGGCATGAATGGGCAGCTTTGCTTGGCTGACCTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCAAGgtatttaaaccacctagaaattcatagacaagtgtagagacattgggtta Alignment from CESAR gGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGAC-TTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG cacacacagacacacctacaccaagcacactatcgcctcttgtcttgcagaGATGTGAAGCCAGACAACATTCTACTGGGCATGAATGGGCAGCTTTGCTTGGCTGACCTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCAAGgtatttaaaccacctagaaattcatagacaagtgtagagacattgggtta Alignment from Spaln_aa2Genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGAC-TTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG cacacacagacacacctacaccaagcacactatcgcctcttgtcttgcagAGATGTGAAGCCAGACAACATTCTACTGGGCATGAATGGGCAGCTTTGCTTGGCTGACcTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCAAGgtatttaaaccacctagaaattcatagacaagtgtagagacattgggtta Alignment from Spaln_nt2Genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGAC-TTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG cacacacagacacacctacaccaagcacactatcgcctcttgtcttgcagAGATGTGAAGCCAGACAACATTCTACTGGGCATGAATGGGCAGCTTTGCTTGGCTGACCTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCAAGgtatttaaaccacctagaaattcatagacaagtgtagagacattgggtta Alignment from Pairagon GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGA-CTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG cacacacagacacacctacaccaagcacactatcgcctcttgtcttgcagAGATGTGAAGCCAGACAACATTCTACTGGGCATGAATGGGCAGCTTTGCTTGGCTGACCTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCAAGgtatttaaaccacctagaaattcatagacaagtgtagagacattgggtta Alignment from Exonerate_protein2genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGAC-TTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG cacacacagacacacctacaccaagcacactatcgcctcttgtcttgcagAGATGTGAAGCCAGACAACATTCTACTGGGCATGAATGGGCAGCTTTGCTTGGCTGACCTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCAAGgtatttaaaccacctagaaattcatagacaagtgtagagacattgggtta Alignment from Exonerate_coding2genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCAGAC-TTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG cacacacagacacacctacaccaagcacactatcgcctcttgtcttgcagAGATGTGAAGCCAGACAACATTCTACTGGGCATGAATGGGCAGCTTTGCTTGGCTGACCTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCAAGgtatttaaaccacctagaaattcatagacaagtgtagagacattgggtta Alignment from GeneWise GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGCCACATCCGCCTGGCA-GACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG cacacacagacacacctacaccaagcacactatcgcctcttgtcttgcagAGATGTGAAGCCAGACAACATTCTACTGGGCATGAATGGGCAGCTTTGCTTGGCTGACCTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCAAGgtatttaaaccacctagaaattcatagacaagtgtagagacattgggtta #### Cdc42bpg_ID1577_7 --> 0 - 0 Original Alignment GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAG-ATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG ctgtggctccacaatggtgcctcctctgtattttcatggtctcttggtagGTGGATTCATCAGTTGCTGTAGGGACCCCGGACTACATCTCTCCTGAGCATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTACGGACCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACTTACGGGAAGATCATGAACCATGAGgtaaagttgtagggctcagggaccccttcattgtggaggttattccatat Alignment from CESAR GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAG-ATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG ctgtggctccacaatggtgcctcctctgtattttcatggtctcttggtagGTGGATTCATCAGTTGCTGTAGGGACCCCGGACTACATCTCTCCTGAGCATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTACGGACCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACTTACGGGAAGATCATGAACCATGAGgtaaagttgtagggctcagggaccccttcattgtggaggttattccatat Alignment from Spaln_aa2Genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAG-ATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG ctgtggctccacaatggtgcctcctctgtattttcatggtctcttggtagGTGGATTCATCAGTTGCTGTAGGGACCCCGGACTACATCTCTCCTGAGcATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTACGGACCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACTTACGGGAAGATCATGAACCATGAGgtaaagttgtagggctcagggaccccttcattgtggaggttattccatat Alignment from Spaln_nt2Genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAG-ATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG ctgtggctccacaatggtgcctcctctgtattttcatggtctcttggtagGTGGATTCATCAGTTGCTGTAGGGACCCCGGACTACATCTCTCCTGAGCATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTACGGACCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACTTACGGGAAGATCATGAACCATGAGgtaaagttgtagggctcagggaccccttcattgtggaggttattccatat Alignment from Pairagon GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAG-ATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG ctgtggctccacaatggtgcctcctctgtattttcatggtctcttggtagGTGGATTCATCAGTTGCTGTAGGGACCCCGGACTACATCTCTCCTGAGCATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTACGGACCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACTTACGGGAAGATCATGAACCATGAGgtaaagttgtagggctcagggaccccttcattgtggaggttattccatat Alignment from Exonerate_protein2genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAG-ATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG ctgtggctccacaatggtgcctcctctgtattttcatggtctcttggtagGTGGATTCATCAGTTGCTGTAGGGACCCCGGACTACATCTCTCCTGAGCATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTACGGACCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACTTACGGGAAGATCATGAACCATGAGgtaaagttgtagggctcagggaccccttcattgtggaggttattccatat Alignment from Exonerate_coding2genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAG-ATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG ctgtggctccacaatggtgcctcctctgtattttcatggtctcttggtagGTGGATTCATCAGTTGCTGTAGGGACCCCGGACTACATCTCTCCTGAGCATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTACGGACCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACTTACGGGAAGATCATGAACCATGAGgtaaagttgtagggctcagggaccccttcattgtggaggttattccatat Alignment from GeneWise GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAG-ATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG ctgtggctccacaatggtgcctcctctgtattttcatggtctcttggtagGTGGATTCATCAGTTGCTGTAGGGACCCCGGACTACATCTCTCCTGAGCATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTACGGACCACAATGTGACTGGTGGTCACTGGGAGTCTGTGCTTATGAGCTGCTGTTTGGGGAAACACCCTTTTATGCTGAATCTCTGGTAGAAACTTACGGGAAGATCATGAACCATGAGgtaaagttgtagggctcagggaccccttcattgtggaggttattccatat #### Cdc42bpg_ID1583_13 --> 0 - 0 Original Alignment GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAG-CTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagagctgagcattctgacttcgctttgtacatccttgtttgtctttcagGAGCTGACTGAAGCTCAGGCAGCATTGCAAGTGCAGGATGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCAGCAGGACAGCTTCAGACCCTGAATACTCAGCCTCCAAGAGGCCTGGGTTGTCCGCAGGGAGgtgagcggtgagacattcaaaggctgcagggcattgggcaccccatgttg Alignment from CESAR GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAG-CTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagagctgagcattctgacttcgctttgtacatccttgtttgtctttcagGAGCTGACTGAAGCTCAGGCAGCATTGCAAGTGCAGGATGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCAGCAGGACAGCTTCAGACCCTGAATACTCAGCCTCCAAGAGGCCTGGGTTGTCCGCAGGGAGgtgagcggtgagacattcaaaggctgcagggcattgggcaccccatgttg Alignment from Spaln_aa2Genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAG-CTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagagctgagcattctgacttcgctttgtacatccttgtttgtctttcagGAGCTGACTGAAGCTCAGGCAGCATTGCAAGTGCAGGATGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCAGCAGGACAGCTTCAGACCCTGAATACTCAGcCTCCAAGAGGCCTGGGTTGTCCGCAGGGAGgtgagcggtgagacattcaaaggctgcagggcattgggcaccccatgttg Alignment from Spaln_nt2Genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGC-TGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagagctgagcattctgacttcgctttgtacatccttgtttgtctttcagGAGCTGACTGAAGCTCAGGCAGCATTGCAAGTGCAGGATGCTGAGTTGTGCCAAGC---AAACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCAGCAGGACAGCTTCAGACCCTGAATACTCAGCCTCCAAGAGGCCTGGGTTGTCCGCAGGGAGgtgagcggtgagacattcaaaggctgcagggcattgggcaccccatgttg Alignment from Pairagon GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAG-CTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagagctgagcattctgacttcgctttgtacatccttgtttgtctttcagGAGCTGACTGAAGCTCAGGCAGCATTGCAAGTGCAGGATGCTGAGTTGTGCCAAGC---AAACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCAGCAGGACAGCTTCAGACCCTGAATACTCAGCCTCCAAGAGGCCTGGGTTGTCCGCAGGGAGgtgagcggtgagacattcaaaggctgcagggcattgggcaccccatgttg Alignment from Exonerate_protein2genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAG-CTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagagctgagcattctgacttcgctttgtacatccttgtttgtctttcagGAGCTGACTGAAGCTCAGGCAGCATTGCAAGTGCAGGATGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCAGCAGGACAGCTTCAGACCCTGAATACTCAGCCTCCAAGAGGCCTGGGTTGTCCGCAGGGAGgtgagcggtgagacattcaaaggctgcagggcattgggcaccccatgttg Alignment from Exonerate_coding2genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAG-CTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagagctgagcattctgacttcgctttgtacatccttgtttgtctttcagGAGCTGACTGAAGCTCAGGCAGCATTGCAAGTGCAGGATGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCAGCAGGACAGCTTCAGACCCTGAATACTCAGCCTCCAAGAGGCCTGGGTTGTCCGCAGGGAGgtgagcggtgagacattcaaaggctgcagggcattgggcaccccatgttg Alignment from GeneWise GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAG-CTGGAGGAAGCCTGGGTTGTCCGGAGAGAG tagagctgagcattctgacttcgctttgtacatccttgtttgtctttcagGAGCTGACTGAAGCTCAGGCAGCATTGCAAGTGCAGGATGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCAGCAGGACAGCTTCAGACCCTGAATACTCAGCCTCCAAGAGGCCTGGGTTGTCCGCAGGGAGgtgagcggtgagacattcaaaggctgcagggcattgggcaccccatgttg #### Cdc42bpg_ID1584_14 --> 0 - 0 Original Alignment CTCGAAGGCCAGGTGACCACCCTGAGT-CAGGAGGTGACACGGCTCCAGGGACAATGTAAACAAGAATCTTCACAGGCCAAG aattacatggtgctagtcccacgttccctggcttgatcttttgcacacagCTTGAAGGCCAGGTGACCACTCTGAGTCGACGAGGTGACTCGGCTGCAGGGACAATGTAAAGAAGAATCTTCA---GCTAAGgtacttttagttgctattctccatgcagcacatctagtctcctacctaga Alignment from CESAR CTCGAAGGCCAGGTGACCACCCTGAGTCAG-GAGGTGACACGGCTCCAGGGACAATGTAAACAAGAATCTTCACAGGCCAAG aattacatggtgctagtcccacgttccctggcttgatcttttgcacacagCTTGAAGGCCAGGTGACCACTCTGAGTCGACGAGGTGACTCGGCTGCAGGGACAATGTAAAGAAGAATCTTCA---GCTAAGgtacttttagttgctattctccatgcagcacatctagtctcctacctaga Alignment from Spaln_aa2Genome CTCGAAGGCCAGGTGACCACCCTGAGTCAG-GAGGTGACACGGCTCCAGGGACAATGTAAACAAGAATCTTCACAGGCCAAG aattacatggtgctagtcccacgttccctggcttgatcttttgcacacagCTTGAAGGCCAGGTGACCACTCTGAGTCGAcGAGGTGACTCGGCTGCAGGGACAATGTAAAGAAGAATCTTCA---GCTAAGgtacttttagttgctattctccatgcagcacatctagtctcctacctaga Alignment from Spaln_nt2Genome CTCGAAGGCCAGGTGACCACCCTGAGTC-AGGAGGTGACACGGCTCCAGGGACAATGTAAACAAGAATCTTCACAGGCCAAG aattacatggtgctagtcccacgttccctggcttgatcttttgcacacagCTTGAAGGCCAGGTGACCACTCTGAGTCGACGAGGTGACTCGGCTGCAGGGACAATGTAAAGAAGAATCTTCA---GCTAAGgtacttttagttgctattctccatgcagcacatctagtctcctacctaga Alignment from Pairagon CTCGAAGGCCAGGTGACCACCCTGAGTC-AGGAGGTGACACGGCTCCAGGGACAATGTAAACAAGAATCTTCACAGGCCAAG aattacatggtgctagtcccacgttccctggcttgatcttttgcacacagCTTGAAGGCCAGGTGACCACTCTGAGTCGACGAGGTGACTCGGCTGCAGGGACAATGTAAAGAAGAATCTTCA---GCTAAGgtacttttagttgctattctccatgcagcacatctagtctcctacctaga Alignment from Exonerate_protein2genome CTCGAAGGCCAGGTGACCACCCTGAGTCAG-GAGGTGACACGGCTCCAGGGACAATGTAAACAAGAATCTTCACAGGCCAAG aattacatggtgctagtcccacgttccctggcttgatcttttgcacacagCTTGAAGGCCAGGTGACCACTCTGAGTCGACGAGGTGACTCGGCTGCAGGGACAATGTAAAGAAGAATCTTCA---GCTAAGgtacttttagttgctattctccatgcagcacatctagtctcctacctaga Alignment from Exonerate_coding2genome CTCGAAGGCCAGGTGACCACCCTGAGTCAG-GAGGTGACACGGCTCCAGGGACAATGTAAACAAGAATCTTCACAGGCCAAG aattacatggtgctagtcccacgttccctggcttgatcttttgcacacagCTTGAAGGCCAGGTGACCACTCTGAGTCGACGAGGTGACTCGGCTGCAGGGACAATGTAAAGAAGAATCTTCA---GCTAAGgtacttttagttgctattctccatgcagcacatctagtctcctacctaga Alignment from GeneWise CTCGAAGGCCAGGTGACCACCCTGAGT-CAGGAGGTGACACGGCTCCAGGGACAATGTAAACAAGAATCTTCACAGGCCAAG aattacatggtgctagtcccacgttccctggcttgatcttttgcacacagCTTGAAGGCCAGGTGACCACTCTGAGTCGACGAGGTGACTCGGCTGCAGGGACAATGTAAAGAAGAATCTTCA---GCTAAGgtacttttagttgctattctccatgcagcacatctagtctcctacctaga #### Cdc42bpg_ID1585_15 --> 0 - 2 Original Alignment ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCT-CAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAgg aggccctgacttctcaaaccccaaccctccttcgtttcccttttccacagACTGTCCATGCAGCCCCTGAGATGAATGGCATAGGGTCTCCTGAGGGTCAGTCTCCAAGAGGCCCAACTGAGGAAGGAAGTGGTAGCTCTGAGGGAGCAACTGGAGCATGCCTGCAGCCAAgggtaagcacatggtagttgcagccaggaaggggcaaggtaaggtcaccctg Alignment from CESAR ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCT-CAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAgg aggccctgacttctcaaaccccaaccctccttcgtttcccttttccacagACTGTCCATGCAGCCCCTGAGATGAATGGCATAGGGTCTCCTGAGGGTCAGTCTCCAAGAGGCCCAACTGAGGAAGGAAGTGGTAGCTCTGAGGGAGCAACTGGAGCATGCCTGCAGCCAAgggtaagcacatggtagttgcagccaggaaggggcaaggtaaggtcaccctg Alignment from Spaln_aa2Genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCT-CAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccctgacttctcaaaccccaaccctccttcgtttcccttttccacagACTGTCCATGCAGCCCCTGAGATGAATGGCATAGGGTCTCCTGAGGGTCAGTCTcCAAGAGGCCCAACTGAGGAAGGAAGTGGTAGCTCTGAGGGAGCAACTGGAGCATGCCTGCAGCCAAGGgtaagcacatggtagttgcagccaggaaggggcaaggtaaggtcaccctg Alignment from Spaln_nt2Genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCT-CAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccctgacttctcaaaccccaaccctccttcgtttcccttttccacagACTGTCCATGCAGCCCCTGAGATGAATGGCATAGGGTCTCCTGAGGGTCAGTCTCCAAGAGGCCCAACTGAGGAAGGAAGTGGTAGCTCTGAGGGAGCAACTGGAGCATGCCTGCAGCCAAGGgtaagcacatggtagttgcagccaggaaggggcaaggtaaggtcaccctg Alignment from Pairagon ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCT-CAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccctgacttctcaaaccccaaccctccttcgtttcccttttccacagACTGTCCATGCAGCCCCTGAGATGAATGGCATAGGGTCTCCTGAGGGTCAGTCTCCAAGAGGCCCAACTGAGGAAGGAAGTGGTAGCTCTGAGGGAGCAACTGGAGCATGCCTGCAGCCAAGGgtaagcacatggtagttgcagccaggaaggggcaaggtaaggtcaccctg Alignment from Exonerate_protein2genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCT-CAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccctgacttctcaaaccccaaccctccttcgtttcccttttccacagACTGTCCATGCAGCCCCTGAGATGAATGGCATAGGGTCTCCTGAGGGTCAGTCTCCAAGAGGCCCAACTGAGGAAGGAAGTGGTAGCTCTGAGGGAGCAACTGGAGCATGCCTGCAGCCAAGGgtaagcacatggtagttgcagccaggaaggggcaaggtaaggtcaccctg Alignment from Exonerate_coding2genome ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAGTCT-CAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccctgacttctcaaaccccaaccctccttcgtttcccttttccacagACTGTCCATGCAGCCCCTGAGATGAATGGCATAGGGTCTCCTGAGGGTCAGTCTCCAAGAGGCCCAACTGAGGAAGGAAGTGGTAGCTCTGAGGGAGCAACTGGAGCATGCCTGCAGCCAAGGgtaagcacatggtagttgcagccaggaaggggcaaggtaaggtcaccctg Alignment from GeneWise ACCGTCCATGCAGCCCCTGAGACGAACGGCATAGGATCTCCTGAGGGTCAG-TCTCAAGAGGCCCAGCTGAGGAAGGAAGTGGCGGCTCTGAGGGAGCAGCTGGAGCATGCCTGCAGCCAAGG aggccctgacttctcaaaccccaaccctccttcgtttcccttttccacagACTGTCCATGCAGCCCCTGAGATGAATGGCATAGGGTCTCCTGAGGGTCAGTCTCCAAGAGGCCCAACTGAGGAAGGAAGTGGTAGCTCTGAGGGAGCAACTGGAGCATGCCTGCAGCCAAGGgtaagcacatggtagttgcagccaggaaggggcaaggtaaggtcaccctg #### Cdc42bpg_ID1586_16 --> 1 - 0 Original Alignment gATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGG-GAGCAGGAACGG aggtaaggtcaccctgggattccgctctacttcaaatttacattccttagaATCAGTGTTGGGAAAGAGGAGGTTCTATGCCGATTGCAGGCGGTAAACCAGCAGCTGAGTCGGCGAGCAGGAGTGGgtaaaaatgaaatatgacaaagcacaggttggctgccagccaggtgggtc Alignment from CESAR gATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGG-GAGCAGGAACGG aggtaaggtcaccctgggattccgctctacttcaaatttacattccttagaATCAGTGTTGGGAAAGAGGAGGTTCTATGCCGATTGCAGGCGGTAAACCAGCAGCTGAGTCGGCGAGCAGGAGTGGgtaaaaatgaaatatgacaaagcacaggttggctgccagccaggtgggtc Alignment from Spaln_aa2Genome GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG aggtaaggtcaccctgggattccgctctacttcaaatttacattccttagAATCAGTGTTGGGAAAGAGGAGGTTCTATGCCGATTGCAGGCGGTAAACCAGCAGCTGAGTCGG---CGAGCAGGAgtgggtaaaaatgaaatatgacaaagcacaggttggctgccagccaggtgggtc Alignment from Spaln_nt2Genome GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGG-GAGCAGGAACGG aggtaaggtcaccctgggattccgctctacttcaaatttacattccttagAATCAGTGTTGGGAAAGAGGAGGTTCTATGCCGATTGCAGGCGGTAAACCAGCAGCTGAGTCGGCGAGCAGGAGTGGgtaaaaatgaaatatgacaaagcacaggttggctgccagccaggtgggtc Alignment from Pairagon GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGG-GAGCAGGAACGG aggtaaggtcaccctgggattccgctctacttcaaatttacattccttagAATCAGTGTTGGGAAAGAGGAGGTTCTATGCCGATTGCAGGCGGTAAACCAGCAGCTGAGTCGGCGAGCAGGAGTGGgtaaaaatgaaatatgacaaagcacaggttggctgccagccaggtgggtc Alignment from Exonerate_protein2genome GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGG-GAGCAGGAACGG aggtaaggtcaccctgggattccgctctacttcaaatttacattccttagAATCAGTGTTGGGAAAGAGGAGGTTCTATGCCGATTGCAGGCGGTAAACCAGCAGCTGAGTCGGCGAGCAGGAGTGGgtaaaaatgaaatatgacaaagcacaggttggctgccagccaggtgggtc Alignment from Exonerate_coding2genome GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGG-GAGCAGGAACGG aggtaaggtcaccctgggattccgctctacttcaaatttacattccttagAATCAGTGTTGGGAAAGAGGAGGTTCTATGCCGATTGCAGGCGGTAAACCAGCAGCTGAGTCGGCGAGCAGGAGTGGgtaaaaatgaaatatgacaaagcacaggttggctgccagccaggtgggtc Alignment from GeneWise GATCAGTGTTGGGAAAGAGGAGGTTCTGTGCCGATTGCAGGAGGAAAACCAGCGGCTGAGCCGGGAGCAGGAACGG aggtaaggtcaccctgggattccgctctacttcaaatttacattccttagAATCAGTGTTGGGAAAGAGGAGGTTCTATGCCGATTGCAGGCGGTAAACCAGCAGCTGAGTCGG---CGAGCAGGAgtgggtaaaaatgaaatatgacaaagcacaggttggctgccagccaggtgggtc #### Cdc42bpg_ID1587_17 --> 0 - 2 Original Alignment CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGG-CGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCtg tggggctataaggcattgaggattaatcctttttccttttatgttatcagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGAGCAAGCAACGTCTGGAGGGCGAACGGCCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCtggtaggaatacacagctaggtggcacctctgatactgaggacccagctcac Alignment from CESAR CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGG-CGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCtg tggggctataaggcattgaggattaatcctttttccttttatgttatcagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGAGCAAGCAACGTCTGGAGGGCGAACGGCCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCtggtaggaatacacagctaggtggcacctctgatactgaggacccagctcat Alignment from Spaln_aa2Genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGG-CGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tggggctataaggcattgaggattaatcctttttccttttatgttatcagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGAGCAAGCAACGTCTGGAGGGCGAACGGcCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtaggaatacacagctaggtggcacctctgatactgaggacccagctcac Alignment from Spaln_nt2Genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGG-CGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tggggctataaggcattgaggattaatcctttttccttttatgttatcagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGAGCAAGCAACGTCTGGAGGGCGAACGGCCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtaggaatacacagctaggtggcacctctgatactgaggacccagctcac Alignment from Pairagon CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGG-CGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tggggctataaggcattgaggattaatcctttttccttttatgttatcagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGAGCAAGCAACGTCTGGAGGGCGAACGGCCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtaggaatacacagctaggtggcacctctgatactgaggacccagctcac Alignment from Exonerate_protein2genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGG-CGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tggggctataaggcattgaggattaatcctttttccttttatgttatcagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGAGCAAGCAACGTCTGGAGGGCGAACGGCCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtaggaatacacagctaggtggcacctctgatactgaggacccagctcac Alignment from Exonerate_coding2genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGG-CGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tggggctataaggcattgaggattaatcctttttccttttatgttatcagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGAGCAAGCAACGTCTGGAGGGCGAACGGCCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtaggaatacacagctaggtggcacctctgatactgaggacccagctcac Alignment from GeneWise CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGG-CGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tggggctataaggcattgaggattaatcctttttccttttatgttatcagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGAGCAAGCAACGTCTGGAGGGCGAACGGCCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtaggaatacacagctaggtggcacctctgatactgaggacccagctcac #### Cdc42bpg_ID1597_27 --> 1 - 0 Original Alignment gGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCC-CCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgggaagtccacaccagggtggtatctcttttttttttttttttttccaggGACCCCCAGTTTTCAGCCACTCCCGTCTTGGCCCCCAGATGTCATTCATGCCCAATCAAAGGACCTGCCACGTATCTTCAGGgtgagtacaccgggtgagatggcccatcctccatatctccacctgtgctt Alignment from CESAR gGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCC-CCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgggaagtccacaccagggtggtatctcttttttttttttttttttccaggGACCCCCAGTTTTCAGCCACTCCCGTCTTGGCCCCCAGATGTCATTCATGCCCAATCAAAGGACCTGCCACGTATCTTCAGGgtgagtacaccgggtgagatggcccatcctccatatctccacctgtgctt Alignment from Spaln_aa2Genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCCA-GATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgggaagtccacaccagggtggtatctcttttttttttttttttttccagGGACCCCCAGTTTTCAGCCACTCCCGTCTTGGCCCCCaGATGTCATTCATGCCCAATCAAAGGACCTGCCACGTATCTTCAGGgtgagtacaccgggtgagatggcccatcctccatatctccacctgtgctt Alignment from Spaln_nt2Genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCCCC-AGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgggaagtccacaccagggtggtatctcttttttttttttttttttccagGGACCCCCAGTTTTCAGCCACTCCCGTCTTGGCCCCCAGATGTCATTCATGCCCAATCAAAGGACCTGCCACGTATCTTCAGGgtgagtacaccgggtgagatggcccatcctccatatctccacctgtgctt Alignment from Pairagon GGACCCCCAGTTCTCAGCCACCCCTGTCTTGG-CCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgggaagtccacaccagggtggtatctcttttttttttttttttttccagGGACCCCCAGTTTTCAGCCACTCCCGTCTTGGCCCCCAGATGTCATTCATGCCCAATCAAAGGACCTGCCACGTATCTTCAGGgtgagtacaccgggtgagatggcccatcctccatatctccacctgtgctt Alignment from Exonerate_protein2genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCC-CCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgggaagtccacaccagggtggtatctcttttttttttttttttttccagGGACCCCCAGTTTTCAGCCACTCCCGTCTTGGCCCCCAGATGTCATTCATGCCCAATCAAAGGACCTGCCACGTATCTTCAGGgtgagtacaccgggtgagatggcccatcctccatatctccacctgtgctt Alignment from Exonerate_coding2genome GGACCCCCAGTTCTCAGCCACCCCTGTCTTGGCC-CCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgggaagtccacaccagggtggtatctcttttttttttttttttttccagGGACCCCCAGTTTTCAGCCACTCCCGTCTTGGCCCCCAGATGTCATTCATGCCCAATCAAAGGACCTGCCACGTATCTTCAGGgtgagtacaccgggtgagatggcccatcctccatatctccacctgtgctt Alignment from GeneWise GGACCCCCAGTTCTCAGCCACCCCTGTCTTG-GCCCCAGATGTCATTCATGCCCAATCCAAGGACCTGCCACGTATCTTCAGG tgggaagtccacaccagggtggtatctcttttttttttttttttttccagGGACCCCCAGTTTTCAGCCACTCCCGTCTTGGCCCCCAGATGTCATTCATGCCCAATCAAAGGACCTGCCACGTATCTTCAGGgtgagtacaccgggtgagatggcccatcctccatatctccacctgtgctt #### Cdc42bpg_ID1603_33 --> 2 - 2 Original Alignment agAAGGACGAGTTTGACATTCCCGAC-CTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCag aggcctacagttacaagtgaacagctccctgacccctcctgcctttgcagaaAAGGATGAGTTTGAGATTCCTGACCCTGACAGACAACAGCCGGCGCCAGCTCTTCCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAACAGCGTaggttagaagctatgtggtgggtctagctactgggtgggactttcctattct Alignment from CESAR agAAGGACGAGTTTGACATTCCCGAC-CTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCag aggcctacagttacaagtgaacagctccctgacccctcctgcctttgcagaaAAGGATGAGTTTGAGATTCCTGACCCTGACAGACAACAGCCGGCGCCAGCTCTTCCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAACAGCGTaggttagaagctatgtggtgggtctagctactgggtgggactttcctattct Alignment from Spaln_aa2Genome AGAAGGACGAGTTTGACATTCCCGAC-CTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG aggcctacagttacaagtgaacagctccctgacccctcctgcctttgcagAAAAGGATGAGTTTGAGATTCCTGACcCTGACAGACAACAGCCGGCGCCAGCTCTTCCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAACAGCGTAGgttagaagctatgtggtgggtctagctactgggtgggactttcctattct Alignment from Spaln_nt2Genome AGAAGGACGAGTTTGACATTCCCGACC-TCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG aggcctacagttacaagtgaacagctccctgacccctcctgcctttgcagAAAAGGATGAGTTTGAGATTCCTGACCCTGACAGACAACAGCCGGCGCCAGCTCTTCCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAACAGCGTAGgttagaagctatgtggtgggtctagctactgggtgggactttcctattct Alignment from Pairagon AGAAGGACGAGTTTGACATTCCCGA-CCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG aggcctacagttacaagtgaacagctccctgacccctcctgcctttgcagAAAAGGATGAGTTTGAGATTCCTGACCCTGACAGACAACAGCCGGCGCCAGCTCTTCCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAACAGCGTAGgttagaagctatgtggtgggtctagctactgggtgggactttcctattct Alignment from Exonerate_protein2genome AGAAGGACGAGTTTGACATTCCCGAC-CTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG aggcctacagttacaagtgaacagctccctgacccctcctgcctttgcagAAAAGGATGAGTTTGAGATTCCTGACCCTGACAGACAACAGCCGGCGCCAGCTCTTCCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAACAGCGTAGgttagaagctatgtggtgggtctagctactgggtgggactttcctattct Alignment from Exonerate_coding2genome AGAAGGACGAGTTTGACATTCCCGAC-CTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG aggcctacagttacaagtgaacagctccctgacccctcctgcctttgcagAAAAGGATGAGTTTGAGATTCCTGACCCTGACAGACAACAGCCGGCGCCAGCTCTTCCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAACAGCGTAGgttagaagctatgtggtgggtctagctactgggtgggactttcctattct Alignment from GeneWise AGAAGGACGAGTTTGACATTCCCGAC-CTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG aggcctacagttacaagtgaacagctccctgacccctcctgcctttgcagAAAAGGATGAGTTTGAGATTCCTGACCCTGACAGACAACAGCCGGCGCCAGCTCTTCCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAACAGCGTAGgttagaagctatgtggtgggtctagctactgggtgggactttcctattct #### Cdc42bpg_ID1605_35 --> 0 - 1 Original Alignment GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGG-CGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAt tccaatgtctgagctttacagtcccatgcttcatagctctctttccacagGCCCAAGAACAAAAGAGCAGTGGTGCCCGCAGCTCTGGACCGCAACGGCCTCACAGCTTCTTAGAGGCGTTGCGGCCGGCCAGTGTCAACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCAtgtaggcatagggatagctcccactctgcaagttcttgcatgcttcctctt Alignment from CESAR GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGG-CGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAt tccaatgtctgagctttacagtcccatgcttcatagctctctttccacagGCCCAAGAACAAAAGAGCAGTGGTGCCCGCAGCTCTGGACCGCAACGGCCTCACAGCTTCTTAGAGGCGTTGCGGCCGGCCAGTGTCAACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCAtgtaggcatagggatagctcccactctgcaagttcttgcatgcttcctctt Alignment from Spaln_aa2Genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGG-CGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tccaatgtctgagctttacagtcccatgcttcatagctctctttccacagGCCCAAGAACAAAAGAGCAGTGGTGCCCGCAGCTCTGGACCGCAACGGCCTCACAGCTTCTTAGAGGCGTTGCGGcCGGCCAGTGTCAACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCATgtaggcatagggatagctcccactctgcaagttcttgcatgcttcctctt Alignment from Spaln_nt2Genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGG-CGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tccaatgtctgagctttacagtcccatgcttcatagctctctttccacagGCCCAAGAACAAAAGAGCAGTGGTGCCCGCAGCTCTGGACCGCAACGGCCTCACAGCTTCTTAGAGGCGTTGCGGCCGGCCAGTGTCAACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCATgtaggcatagggatagctcccactctgcaagttcttgcatgcttcctctt Alignment from Pairagon GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGG-CGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tccaatgtctgagctttacagtcccatgcttcatagctctctttccacagGCCCAAGAACAAAAGAGCAGTGGTGCCCGCAGCTCTGGACCGCAACGGCCTCACAGCTTCTTAGAGGCGTTGCGGCCGGCCAGTGTCAACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCATgtaggcatagggatagctcccactctgcaagttcttgcatgcttcctctt Alignment from Exonerate_protein2genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGG-CGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tccaatgtctgagctttacagtcccatgcttcatagctctctttccacagGCCCAAGAACAAAAGAGCAGTGGTGCCCGCAGCTCTGGACCGCAACGGCCTCACAGCTTCTTAGAGGCGTTGCGGCCGGCCAGTGTCAACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCATgtaggcatagggatagctcccactctgcaagttcttgcatgcttcctctt Alignment from Exonerate_coding2genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGG-CGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tccaatgtctgagctttacagtcccatgcttcatagctctctttccacagGCCCAAGAACAAAAGAGCAGTGGTGCCCGCAGCTCTGGACCGCAACGGCCTCACAGCTTCTTAGAGGCGTTGCGGCCGGCCAGTGTCAACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCATgtaggcatagggatagctcccactctgcaagttcttgcatgcttcctctt Alignment from GeneWise GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGG-CGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tccaatgtctgagctttacagtcccatgcttcatagctctctttccacagGCCCAAGAACAAAAGAGCAGTGGTGCCCGCAGCTCTGGACCGCAACGGCCTCACAGCTTCTTAGAGGCGTTGCGGCCGGCCAGTGTCAACAGACAGTGATCGTCTCCCAGGCCGAACAGACCCATgtaggcatagggatagctcccactctgcaagttcttgcatgcttcctctt #### Cdca5_ID1428_2 --> 2 - 0 Original Alignment ggCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCTGGC-TCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG agcatcttgtgccatttatttgtaaccttagcttttctcccgctttccagggCCAAGGACTTTGCTAACTAAGCCTTCAGAGTCATCAAAGCGTAAATCGGGTCTCAGACCTCCCGAATTCATTCTCTGAAACCTGGCAAAGGgtaaatacttggtcccccaggtgctggggtgggttggatttctgttctgt Alignment from CESAR ggCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCTGGC-TCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG agcatcttgtgccatttatttgtaaccttagcttttctcccgctttccagggCCAAGGACTTTGCTAACTAAGCCTTCAGAGTCATCAAAGCGTAAATCGGGTCTCAGACCTCCCGAATTCATTCTCTGAAACCTGGCAAAGGgtaaatacttggtcccccaggtgctggggtgggttggatttctgttctgt Alignment from Spaln_aa2Genome GGCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCTGGC-TCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG agcatcttgtgccatttatttgtaaccttagcttttctcccgctttccagGGCCAAGGACTTTGCTAACTAAGCCTTCAGAGTCATCAAAGCGTAAATCGGGTcTCAGACCTCCCGAATTCATTCTCTGAAACCTGGCAAAGGgtaaatacttggtcccccaggtgctggggtgggttggatttctgttctgt Alignment from Spaln_nt2Genome GGCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCTGG-CTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG agcatcttgtgccatttatttgtaaccttagcttttctcccgctttccagGGCCAAGGACTTTGCTAACTAAGCCTTCAGAGTCATCAAAGCGTAAATCGGGTCTCAGACCTCCCGAATTCATTCTCTGAAACCTGGCAAAGGgtaaatacttggtcccccaggtgctggggtgggttggatttctgttctgt Alignment from Pairagon GGCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCTGG-CTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG agcatcttgtgccatttatttgtaaccttagcttttctcccgctttccagGGCCAAGGACTTTGCTAACTAAGCCTTCAGAGTCATCAAAGCGTAAATCGGGTCTCAGACCTCCCGAATTCATTCTCTGAAACCTGGCAAAGGgtaaatacttggtcccccaggtgctggggtgggttggatttctgttctgt Alignment from Exonerate_protein2genome GGCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCTGGC-TCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG agcatcttgtgccatttatttgtaaccttagcttttctcccgctttccagGGCCAAGGACTTTGCTAACTAAGCCTTCAGAGTCATCAAAGCGTAAATCGGGTCTCAGACCTCCCGAATTCATTCTCTGAAACCTGGCAAAGGgtaaatacttggtcccccaggtgctggggtgggttggatttctgttctgt Alignment from Exonerate_coding2genome agcatcttgtgccatttatttgtaaccttagcttttctcccgctttccagggccaaggactttgctaactaagccttcagagtcatcaaagcgtaaatcgggtctcagacctcccgaattcattctctgaaacctggcaaagggtaaatacttggtcccccaggtgctggggtgggttggatttctgttctgt Alignment from GeneWise GGCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCTGGC-TCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG agcatcttgtgccatttatttgtaaccttagcttttctcccgctttccagGGCCAAGGACTTTGCTAACTAAGCCTTCAGAGTCATCAAAGCGTAAATCGGGTCTCAGACCTCCCGAATTCATTCTCTGAAACCTGGCAAAGGgtaaatacttggtcccccaggtgctggggtgggttggatttctgttctgt #### Chuk_ID8921_7 --> 0 - 2 Original Alignment GCCCCAGAGCTCTTTGAA-AATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCtg ttggatcttaatataatctctattttattcattccctttccctttcccagGCCCCAGACCTCTTTGAACAATAAGCCATACACAGCCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCtggtaggtcagagctttaggatatgtcctggttgtggttgtggaagcagctg Alignment from CESAR GCCCCAGAGCTCTTTGAA-AATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCtg ttggatcttaatataatctctattttattcattccctttccctttcccagGCCCCAGACCTCTTTGAACAATAAGCCATACACAGCCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCtggtaggtcagagctttaggatatgtcctggttgtggttgtggaagcagctg Alignment from Spaln_aa2Genome GCCCCAGAGCTCTTTGAA-AATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttggatcttaatataatctctattttattcattccctttccctttcccagGCCCCAGACCTCTTTGAAcAATAAGCCATACACAGCCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtaggtcagagctttaggatatgtcctggttgtggttgtggaagcagctg Alignment from Spaln_nt2Genome GCCCCAGAGCTCTTTGAA-AATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttggatcttaatataatctctattttattcattccctttccctttcccagGCCCCAGACCTCTTTGAACAATAAGCCATACACAGCCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtaggtcagagctttaggatatgtcctggttgtggttgtggaagcagctg Alignment from Pairagon GCCCCAGAGCTCTTTGAA-AATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttggatcttaatataatctctattttattcattccctttccctttcccagGCCCCAGACCTCTTTGAACAATAAGCCATACACAGCCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtaggtcagagctttaggatatgtcctggttgtggttgtggaagcagctg Alignment from Exonerate_protein2genome GCCCCAGAGCTCTTTGAA-AATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttggatcttaatataatctctattttattcattccctttccctttcccagGCCCCAGACCTCTTTGAACAATAAGCCATACACAGCCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtaggtcagagctttaggatatgtcctggttgtggttgtggaagcagctg Alignment from Exonerate_coding2genome GCCCCAGAGCTCTTTGAA-AATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttggatcttaatataatctctattttattcattccctttccctttcccagGCCCCAGACCTCTTTGAACAATAAGCCATACACAGCCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtaggtcagagctttaggatatgtcctggttgtggttgtggaagcagctg Alignment from GeneWise GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG ttggatcttaatataatctctattttattcattccctttccctttcccaggccccagACCTCT------TTGAACAATAAGCCATACACAGCCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtaggtcagagctttaggatatgtcctggttgtggttgtggaagcagctg #### Col17a1_ID10271_51 --> 2 - 1 Original Alignment gtGACAGGGGCCCTGCTGGACCA-CGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAg ctttgcctcttactcattcttaggtgtcccctctcctcaccaatccccaggtGACAGGGACCCAGCTAGGCCACCGAGGCCCACCAGGGCAACCTGGTCCCAGAGGGAACAAAGGAGAAAAGGGGGATAAAggtgagtagtggagtgtgaactggggtgctggggcttaggttctgaaaact Alignment from CESAR gtGACAGGGGCCCTGCTGGACCA-CGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAg ctttgcctcttactcattcttaggtgtcccctctcctcaccaatccccaggtGACAGGGACCCAGCTAGGCCACCGAGGCCCACCAGGGCAACCTGGTCCCAGAGGGAACAAAGGAGAAAAGGGGGATAAAggtgagtagtggagtgtgaactggggtgctggggcttaggttctgaaaact Alignment from Spaln_aa2Genome GGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ctttgcctcttactcattcttaggtgtcccctctcctcaccaatccccaggtgacagGGACCCAGCTAGGCCACCGAGGCCCACCAGGGCAACCTGGTCCCAGAGGGAACAAAGGAGAAAAGGGGGATAAAGgtgagtagtggagtgtgaactggggtgctggggcttaggttctgaaaact Alignment from Spaln_nt2Genome GTGACAGGGGCCCTGCTGGACCAC-GAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ctttgcctcttactcattcttaggtgtcccctctcctcaccaatccccagGTGACAGGGACCCAGCTAGGCCACCGAGGCCCACCAGGGCAACCTGGTCCCAGAGGGAACAAAGGAGAAAAGGGGGATAAAGgtgagtagtggagtgtgaactggggtgctggggcttaggttctgaaaact Alignment from Pairagon GTGACAGGGGCCCTGCTGGACCA-CGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ctttgcctcttactcattcttaggtgtcccctctcctcaccaatccccagGTGACAGGGACCCAGCTAGGCCACCGAGGCCCACCAGGGCAACCTGGTCCCAGAGGGAACAAAGGAGAAAAGGGGGATAAAGgtgagtagtggagtgtgaactggggtgctggggcttaggttctgaaaact Alignment from Exonerate_protein2genome GTGACAGGGGCCCTGCTGGACCA-CGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ctttgcctcttactcattcttaggtgtcccctctcctcaccaatccccagGTGACAGGGACCCAGCTAGGCCACCGAGGCCCACCAGGGCAACCTGGTCCCAGAGGGAACAAAGGAGAAAAGGGGGATAAAGgtgagtagtggagtgtgaactggggtgctggggcttaggttctgaaaact Alignment from Exonerate_coding2genome GTGACAGGGGCCCTGCTGGACCA-CGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ctttgcctcttactcattcttaggtgtcccctctcctcaccaatccccagGTGACAGGGACCCAGCTAGGCCACCGAGGCCCACCAGGGCAACCTGGTCCCAGAGGGAACAAAGGAGAAAAGGGGGATAAAGgtgagtagtggagtgtgaactggggtgctggggcttaggttctgaaaact Alignment from GeneWise GGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ctttgcctcttactcattcttaggtgtcccctctcctcaccaatccccaggtgacagGGACCCAGCTAGGCCACCGAGGCCCACCAGGGCAACCTGGTCCCAGAGGGAACAAAGGAGAAAAGGGGGATAAAGgtgagtagtggagtgtgaactggggtgctggggcttaggttctgaaaact #### Col17a1_ID10272_50 --> 2 - 1 Original Alignment ccTACGGCACTATCCCGGGA-CCACCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAg agccaatggtactatatgagtcttgaagactaccaaaattccatctacagccTATGGTACTATTCCAGGTCCCACCTGGCCAGAAAGGAGATGTAGGGACCCCAGGCCCCAAAggtgagcgtgccaaatctatagtttagttgataatgccctagtaccttact Alignment from CESAR ccTACGGCACTATCCCGGGA-CCACCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAg agccaatggtactatatgagtcttgaagactaccaaaattccatctacagccTATGGTACTATTCCAGGTCCCACCTGGCCAGAAAGGAGATGTAGGGACCCCAGGCCCCAAAggtgagcgtgccaaatctatagtttagttgataatgccctagtaccttact Alignment from Spaln_aa2Genome CCTACGGCACTATCCCGGGA-CCACCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG agccaatggtactatatgagtcttgaagactaccaaaattccatctacagCCTATGGTACTATTCCAGGTcCCACCTGGCCAGAAAGGAGATGTAGGGACCCCAGGCCCCAAAGgtgagcgtgccaaatctatagtttagttgataatgccctagtaccttact Alignment from Spaln_nt2Genome CCTACGGCACTATCCCGGGACC-ACCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG agccaatggtactatatgagtcttgaagactaccaaaattccatctacagCCTATGGTACTATTCCAGGTCCCACCTGGCCAGAAAGGAGATGTAGGGACCCCAGGCCCCAAAGgtgagcgtgccaaatctatagtttagttgataatgccctagtaccttact Alignment from Pairagon CCTACGGCACTATCCCGGG-ACCACCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG agccaatggtactatatgagtcttgaagactaccaaaattccatctacagCCTATGGTACTATTCCAGGTCCCACCTGGCCAGAAAGGAGATGTAGGGACCCCAGGCCCCAAAGgtgagcgtgccaaatctatagtttagttgataatgccctagtaccttact Alignment from Exonerate_protein2genome CCTACGGCACTATCCCGGGA-CCACCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG agccaatggtactatatgagtcttgaagactaccaaaattccatctacagCCTATGGTACTATTCCAGGTCCCACCTGGCCAGAAAGGAGATGTAGGGACCCCAGGCCCCAAAGgtgagcgtgccaaatctatagtttagttgataatgccctagtaccttact Alignment from Exonerate_coding2genome CCTACGGCACTATCCCGGGA-CCACCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG agccaatggtactatatgagtcttgaagactaccaaaattccatctacagCCTATGGTACTATTCCAGGTCCCACCTGGCCAGAAAGGAGATGTAGGGACCCCAGGCCCCAAAGgtgagcgtgccaaatctatagtttagttgataatgccctagtaccttact Alignment from GeneWise CCTACGGCACTATCCCG-GGACCACCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG agccaatggtactatatgagtcttgaagactaccaaaattccatctacagCCTATGGTACTATTCCAGGTCCCACCTGGCCAGAAAGGAGATGTAGGGACCCCAGGCCCCAAAGgtgagcgtgccaaatctatagtttagttgataatgccctagtaccttact #### Col17a1_ID10276_46 --> 2 - 1 Original Alignment gtTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCA-GGAACATCCTACGAGGAGCTACTGACCATGCTCCGAg accagagttctctggaagttcttcttactagcatctcttctttacctcaggtGCTGGCATCAGTTTTGGACATCCTGGCCCACCTGGACCTCCTGGACTATCTCGGAACATCCTATGAAGAGTTACTGTCTATGCTTAAAggtacgtcaaaacccaaatgtccatcaactcaggatggtgcatcctggcta Alignment from CESAR gtTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCA-GGAACATCCTACGAGGAGCTACTGACCATGCTCCGAg accagagttctctggaagttcttcttactagcatctcttctttacctcaggtGCTGGCATCAGTTTTGGACATCCTGGCCCACCTGGACCTCCTGGACTATCTCGGAACATCCTATGAAGAGTTACTGTCTATGCTTAAAggtacgtcaaaacccaaatgtccatcaactcaggatggtgcatcctggcta Alignment from Spaln_aa2Genome GTTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCA-GGAACATCCTACGAGGAGCTACTGACCATGCTCCGAG accagagttctctggaagttcttcttactagcatctcttctttacctcagGTGCTGGCATCAGTTTTGGACATCCTGGCCCACCTGGACCTCCTGGACTATCTcGGAACATCCTATGAAGAGTTACTGTCTATGCTTAAAGgtacgtcaaaacccaaatgtccatcaactcaggatggtgcatcctggcta Alignment from Spaln_nt2Genome GTTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCA-GGAACATCCTACGAGGAGCTACTGACCATGCTCCGAG accagagttctctggaagttcttcttactagcatctcttctttacctcagGTGCTGGCATCAGTTTTGGACATCCTGGCCCACCTGGACCTCCTGGACTATCTCGGAACATCCTATGAAGAGTTACTGTCTATGCTTAAAGgtacgtcaaaacccaaatgtccatcaactcaggatggtgcatcctggcta Alignment from Pairagon GTTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTG-CCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAG accagagttctctggaagttcttcttactagcatctcttctttacctcagGTGCTGGCATCAGTTTTGGACATCCTGGCCCACCTGGACCTCCTGGACTATCTCGGAACATCCTATGAAGAGTTACTGTCTATGCTTAAAGgtacgtcaaaacccaaatgtccatcaactcaggatggtgcatcctggcta Alignment from Exonerate_protein2genome GTTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCA-GGAACATCCTACGAGGAGCTACTGACCATGCTCCGAG accagagttctctggaagttcttcttactagcatctcttctttacctcagGTGCTGGCATCAGTTTTGGACATCCTGGCCCACCTGGACCTCCTGGACTATCTCGGAACATCCTATGAAGAGTTACTGTCTATGCTTAAAGgtacgtcaaaacccaaatgtccatcaactcaggatggtgcatcctggcta Alignment from Exonerate_coding2genome GTTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCA-GGAACATCCTACGAGGAGCTACTGACCATGCTCCGAG accagagttctctggaagttcttcttactagcatctcttctttacctcagGTGCTGGCATCAGTTTTGGACATCCTGGCCCACCTGGACCTCCTGGACTATCTCGGAACATCCTATGAAGAGTTACTGTCTATGCTTAAAGgtacgtcaaaacccaaatgtccatcaactcaggatggtgcatcctggcta Alignment from GeneWise GTTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTG-CCAGGAACATCCTACGAGGAGCTACTGACCATGCTCCGAG accagagttctctggaagttcttcttactagcatctcttctttacctcagGTGCTGGCATCAGTTTTGGACATCCTGGCCCACCTGGACCTCCTGGACTATCTCGGAACATCCTATGAAGAGTTACTGTCTATGCTTAAAGgtacgtcaaaacccaaatgtccatcaactcaggatggtgcatcctggcta #### Col17a1_ID10278_44 --> 2 - 1 Original Alignment caTCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCC-TCAGAAGATATCTTGGCCATGCTGCGAc gaaatgcatagtttgttgtacacacgctccctcctatctgatatttccagctTCAGGATATAGTGCTGGCTTGTCCTCCGCTTCCTCCCTCAGAAGATATCTTGGCCATGCTGCGAcgtaaccaccgtccaacaggcgggattaggttcttttacctcccacctatc Alignment from CESAR caTCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCC-TCAGAAGATATCTTGGCCATGCTGCGAc gaaatgcatagtttgttgtacacacgctccctcctatctgatatttccagctTCAGGATATAGTGCTGGCTTGTCCTCCGCTTCCTCCCTCAGAAGATATCTTGGCCATGCTGCGAcgtaaccaccgtccaacaggcgggattaggttcttttacctcccacctatc Alignment from Spaln_aa2Genome CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCC-TCAGAAGATATCTTGGCCATGCTGCGAC gaaatgcatagtttgttgtacacacgctccctcctatctgatatttccagCTTCAGGATATAGTGCTGGCTTGTCCTCCGCTTCCTCCcTCAGAAGATATCTTGGCCATGCTGCGACgtaaccaccgtccaacaggcgggattaggttcttttacctcccacctatc Alignment from Spaln_nt2Genome CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCC-TCAGAAGATATCTTGGCCATGCTGCGAC gaaatgcatagtttgttgtacacacgctccctcctatctgatatttccagCTTCAGGATATAGTGCTGGCTTGTCCTCCGCTTCCTCCCTCAGAAGATATCTTGGCCATGCTGCGACgtaaccaccgtccaacaggcgggattaggttcttttacctcccacctatc Alignment from Pairagon CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCT-CCTCAGAAGATATCTTGGCCATGCTGCGAC gaaatgcatagtttgttgtacacacgctccctcctatctgatatttccagCTTCAGGATATAGTGCTGGCTTGTCCTCCGCTTCCTCCCTCAGAAGATATCTTGGCCATGCTGCGACgtaaccaccgtccaacaggcgggattaggttcttttacctcccacctatc Alignment from Exonerate_protein2genome CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCC-TCAGAAGATATCTTGGCCATGCTGCGAC gaaatgcatagtttgttgtacacacgctccctcctatctgatatttccagCTTCAGGATATAGTGCTGGCTTGTCCTCCGCTTCCTCCCTCAGAAGATATCTTGGCCATGCTGCGACgtaaccaccgtccaacaggcgggattaggttcttttacctcccacctatc Alignment from Exonerate_coding2genome CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCC-TCAGAAGATATCTTGGCCATGCTGCGAC gaaatgcatagtttgttgtacacacgctccctcctatctgatatttccagCTTCAGGATATAGTGCTGGCTTGTCCTCCGCTTCCTCCCTCAGAAGATATCTTGGCCATGCTGCGACgtaaccaccgtccaacaggcgggattaggttcttttacctcccacctatc Alignment from GeneWise CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCCTCC-TCAGAAGATATCTTGGCCATGCTGCGAC gaaatgcatagtttgttgtacacacgctccctcctatctgatatttccagCTTCAGGATATAGTGCTGGCTTGTCCTCCGCTTCCTCCCTCAGAAGATATCTTGGCCATGCTGCGACgtaaccaccgtccaacaggcgggattaggttcttttacctcccacctatc #### Col17a1_ID10279_43 --> 2 - 1 Original Alignment gtGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTC-GTAAGCTACTTGCGGt cagctctttctggctgcaggcttgatcacttttctctttttcttttaaaggtGGCAACATCAGGACATATCTCCTAGGGGTTCAGGGGCCCCCTGGACCCCCGGGACCCCCTGGGCCTGTCATCACCATCAAGGGAGAGACTTTTGATTACTCACAGCTGGCAAGTCAGGTACGTTAGCTACCTACGGtgttggtccatgaaaatttctatgttcttcccctctacctttgcaggtcat Alignment from CESAR gtGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTC-GTAAGCTACTTGCGGt cagctctttctggctgcaggcttgatcacttttctctttttcttttaaaggtGGCAACATCAGGACATATCTCCTAGGGGTTCAGGGGCCCCCTGGACCCCCGGGACCCCCTGGGCCTGTCATCACCATCAAGGGAGAGACTTTTGATTACTCACAGCTGGCAAGTCAGGTACGTTAGCTACCTACGGtgttggtccatgaaaatttctatgttcttcccctctacctttgcaggtcat Alignment from Spaln_aa2Genome GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAG cagctctttctggctgcaggcttgatcacttttctctttttcttttaaagGTGGCAACATCAGGACATATCTCCTAGGGGTTCAGGGGCCCCCTGGACCCCCGGGACCCCCTGGGCCTGTCATCACCATCAAGGGAGAGACTTTTGATTACTCACAGCTGGCAAGTCAGgtacgttagctacctacggtgttggtccatgaaaatttctatgttcttcccctctacctttgcaggtcat Alignment from Spaln_nt2Genome GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGT-CGTAAGCTACTTGCGGT cagctctttctggctgcaggcttgatcacttttctctttttcttttaaagGTGGCAACATCAGGACATATCTCCTAGGGGTTCAGGGGCCCCCTGGACCCCCGGGACCCCCTGGGCCTGTCATCACCATCAAGGGAGAGACTTTTGATTACTCACAGCTGGCAAGTCAGGTACGTTAGCTACCTACGGTgttggtccatgaaaatttctatgttcttcccctctacctttgcaggtcat Alignment from Pairagon GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGT-CGTAAGCTACTTGCGGT cagctctttctggctgcaggcttgatcacttttctctttttcttttaaagGTGGCAACATCAGGACATATCTCCTAGGGGTTCAGGGGCCCCCTGGACCCCCGGGACCCCCTGGGCCTGTCATCACCATCAAGGGAGAGACTTTTGATTACTCACAGCTGGCAAGTCAGGTACGTTAGCTACCTACGGTgttggtccatgaaaatttctatgttcttcccctctacctttgcaggtcat Alignment from Exonerate_protein2genome GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTC-GTAAGCTACTTGCGGT cagctctttctggctgcaggcttgatcacttttctctttttcttttaaagGTGGCAACATCAGGACATATCTCCTAGGGGTTCAGGGGCCCCCTGGACCCCCGGGACCCCCTGGGCCTGTCATCACCATCAAGGGAGAGACTTTTGATTACTCACAGCTGGCAAGTCAGGTACGTTAGCTACCTACGGTgttggtccatgaaaatttctatgttcttcccctctacctttgcaggtcat Alignment from Exonerate_coding2genome GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAGGTC-GTAAGCTACTTGCGGT cagctctttctggctgcaggcttgatcacttttctctttttcttttaaagGTGGCAACATCAGGACATATCTCCTAGGGGTTCAGGGGCCCCCTGGACCCCCGGGACCCCCTGGGCCTGTCATCACCATCAAGGGAGAGACTTTTGATTACTCACAGCTGGCAAGTCAGGTACGTTAGCTACCTACGGTgttggtccatgaaaatttctatgttcttcccctctacctttgcaggtcat Alignment from GeneWise GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTACTCCCAGCTGGCAAGCCAG cagctctttctggctgcaggcttgatcacttttctctttttcttttaaagGTGGCAACATCAGGACATATCTCCTAGGGGTTCAGGGGCCCCCTGGACCCCCGGGACCCCCTGGGCCTGTCATCACCATCAAGGGAGAGACTTTTGATTACTCACAGCTGGCAAGTCAGgtacgttagctacctacggtgttggtccatgaaaatttctatgttcttcccctctacctttgcaggtcat #### Col17a1_ID10280_42 --> 2 - 1 Original Alignment ggGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTC-AGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAa tatttttggtgagataaggagctgaattgtttgtattcttattttcatagggGCATCATCAAGCACTCTGTACATGCAGGGGCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCAGAATACATGCAAagtgagtgcttcgacataccacacaacaccatggacatgagtggaaaaagg Alignment from CESAR ggGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTC-AGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAa tatttttggtgagataaggagctgaattgtttgtattcttattttcatagggGCATCATCAAGCACTCTGTACATGCAGGGGCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCAGAATACATGCAAagtgagtgcttcgacataccacacaacaccatggacatgagtggaaaaagg Alignment from Spaln_aa2Genome GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTC-AGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tatttttggtgagataaggagctgaattgtttgtattcttattttcatagGGGCATCATCAAGCACTCTGTACATGCAGGGGCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCcAGCAGCTCTGGCCAGGATATACAGCACTACATTGCAGAATACATGCAAAgtgagtgcttcgacataccacacaacaccatggacatgagtggaaaaagg Alignment from Spaln_nt2Genome GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCT-CAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tatttttggtgagataaggagctgaattgtttgtattcttattttcatagGGGCATCATCAAGCACTCTGTACATGCAGGGGCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCAGAATACATGCAAAgtgagtgcttcgacataccacacaacaccatggacatgagtggaaaaagg Alignment from Pairagon GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCT-CAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tatttttggtgagataaggagctgaattgtttgtattcttattttcatagGGGCATCATCAAGCACTCTGTACATGCAGGGGCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCAGAATACATGCAAAgtgagtgcttcgacataccacacaacaccatggacatgagtggaaaaagg Alignment from Exonerate_protein2genome GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTC-AGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tatttttggtgagataaggagctgaattgtttgtattcttattttcatagGGGCATCATCAAGCACTCTGTACATGCAGGGGCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCAGAATACATGCAAAgtgagtgcttcgacataccacacaacaccatggacatgagtggaaaaagg Alignment from Exonerate_coding2genome GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTC-AGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tatttttggtgagataaggagctgaattgtttgtattcttattttcatagGGGCATCATCAAGCACTCTGTACATGCAGGGGCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCAGAATACATGCAAAgtgagtgcttcgacataccacacaacaccatggacatgagtggaaaaagg Alignment from GeneWise GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTC-AGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA tatttttggtgagataaggagctgaattgtttgtattcttattttcatagGGGCATCATCAAGCACTCTGTACATGCAGGGGCCCCCTGGCCCTCCAGGGCCCCCTGGGCCTCCGGGCTCCCTCCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCAGAATACATGCAAAgtgagtgcttcgacataccacacaacaccatggacatgagtggaaaaagg #### Col17a1_ID10285_37 --> 2 - 1 Original Alignment aaGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGC-CCACGAGGGCCACCAg gtcgggcttcagtcttctttttcctttactgaattctcttgttttcccagaaGGGGTTGGCTTACGTGGTCCCCCTGGCCCATCTGGACCCACGAGGGCCACCAggtgagtactcactaacattttaaagtggggggaatcacagaagtgggaag Alignment from CESAR aaGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGC-CCACGAGGGCCACCAg gtcgggcttcagtcttctttttcctttactgaattctcttgttttcccagaaGGGGTTGGCTTACGTGGTCCCCCTGGCCCATCTGGACCCACGAGGGCCACCAggtgagtactcactaacattttaaagtggggggaatcacagaagtgggaag Alignment from Spaln_aa2Genome AAGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCA-CGAGGGCCACCAG gtcgggcttcagtcttctttttcctttactgaattctcttgttttcccagAAGGGGTTGGCTTACGTGGTCCCCCTGGCCCATCTGGACCCaCGAGGGCCACCAGgtgagtactcactaacattttaaagtggggggaatcacagaagtgggaag Alignment from Spaln_nt2Genome AAGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGC-CCACGAGGGCCACCAG gtcgggcttcagtcttctttttcctttactgaattctcttgttttcccagAAGGGGTTGGCTTACGTGGTCCCCCTGGCCCATCTGGACCCACGAGGGCCACCAGgtgagtactcactaacattttaaagtggggggaatcacagaagtgggaag Alignment from Pairagon AAGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGG-CCCACGAGGGCCACCAG gtcgggcttcagtcttctttttcctttactgaattctcttgttttcccagAAGGGGTTGGCTTACGTGGTCCCCCTGGCCCATCTGGACCCACGAGGGCCACCAGgtgagtactcactaacattttaaagtggggggaatcacagaagtgggaag Alignment from Exonerate_protein2genome AAGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGC-CCACGAGGGCCACCAG gtcgggcttcagtcttctttttcctttactgaattctcttgttttcccagAAGGGGTTGGCTTACGTGGTCCCCCTGGCCCATCTGGACCCACGAGGGCCACCAGgtgagtactcactaacattttaaagtggggggaatcacagaagtgggaag Alignment from Exonerate_coding2genome AAGGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGC-CCACGAGGGCCACCAG gtcgggcttcagtcttctttttcctttactgaattctcttgttttcccagAAGGGGTTGGCTTACGTGGTCCCCCTGGCCCATCTGGACCCACGAGGGCCACCAGgtgagtactcactaacattttaaagtggggggaatcacagaagtgggaag Alignment from GeneWise ACGAGGTCCC gtcgggcttcagtcttctttttcctttactgaattctcttgttttcccagaaggggttggcttacgtggtccccctggcccatctggacccacgagggccaccaggtgagtactcactaacattttaaagtggggggaatcacagAAGTGGGAAG #### Col17a1_ID10297_25 --> 2 - 1 Original Alignment gtGCTGTGGGTCCCCAAGGGCTCCGAGGTGAC-GTGGGACTTCCTGGTGTCAAAg tacctgcatgatgggaatgtaggctagggtcccttctttcatctttcaaggtGCTGTGGGTACCCAGGGGCTCCGGGGTGACCGTGGGACTGCCTGGTGTGAAAggtaatatagggggggagggacaattaaaaagcatgctgtggggaccctca Alignment from CESAR gtGCTGTGGGTCCCCAAGGGCTCCGAGGTGAC-GTGGGACTTCCTGGTGTCAAAg tacctgcatgatgggaatgtaggctagggtcccttctttcatctttcaaggtGCTGTGGGTACCCAGGGGCTCCGGGGTGACCGTGGGACTGCCTGGTGTGAAAggtaatatagggggggagggacaattaaaaagcatgctgtggggaccctca Alignment from Spaln_aa2Genome GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGAC-GTGGGACTTCCTGGTGTCAAAG tacctgcatgatgggaatgtaggctagggtcccttctttcatctttcaagGTGCTGTGGGTACCCAGGGGCTCCGGGGTGACcGTGGGACTGCCTGGTGTGAAAGgtaatatagggggggagggacaattaaaaagcatgctgtggggaccctca Alignment from Spaln_nt2Genome GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGA-CGTGGGACTTCCTGGTGTCAAAG tacctgcatgatgggaatgtaggctagggtcccttctttcatctttcaagGTGCTGTGGGTACCCAGGGGCTCCGGGGTGACCGTGGGACTGCCTGGTGTGAAAGgtaatatagggggggagggacaattaaaaagcatgctgtggggaccctca Alignment from Pairagon GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGA-CGTGGGACTTCCTGGTGTCAAAG tacctgcatgatgggaatgtaggctagggtcccttctttcatctttcaagGTGCTGTGGGTACCCAGGGGCTCCGGGGTGACCGTGGGACTGCCTGGTGTGAAAGgtaatatagggggggagggacaattaaaaagcatgctgtggggaccctca Alignment from Exonerate_protein2genome GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGAC-GTGGGACTTCCTGGTGTCAAAG tacctgcatgatgggaatgtaggctagggtcccttctttcatctttcaagGTGCTGTGGGTACCCAGGGGCTCCGGGGTGACCGTGGGACTGCCTGGTGTGAAAGgtaatatagggggggagggacaattaaaaagcatgctgtggggaccctca Alignment from Exonerate_coding2genome GTGCTGTGGGTCCCCAAGGGCTCCGAGGTGAC-GTGGGACTTCCTGGTGTCAAAG tacctgcatgatgggaatgtaggctagggtcccttctttcatctttcaagGTGCTGTGGGTACCCAGGGGCTCCGGGGTGACCGTGGGACTGCCTGGTGTGAAAGgtaatatagggggggagggacaattaaaaagcatgctgtggggaccctca Alignment from GeneWise tacctgcatgatgggaatgtaggctagggtcccttctttcatctttcaaggtgctgtgggtacccaggggctccggggtgaccgtgggactgcctggtgtgaaaggtaatatagggggggagggacaattaaaaagcatgctgtggggaccctca #### Col17a1_ID10308_14 --> 2 - 1 Original Alignment ctTCCTTTTCAGAAGACACC-CTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATg aggcaggtgtaaaaacagtagactgaatgtgtcttctgatgccatcacagctTCCTTCTCAGAAGAGACACCTGAAAAAGGAGAAGCAGGCTGCATATGCTGCTGACACCTGTCTCAAGGCAGATGTGAATggtaggtgaaatctagcagccactgagtgcacaaacctgcaccttattttt Alignment from CESAR ctTCCTTTTCAGAAGACACC-CTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATg aggcaggtgtaaaaacagtagactgaatgtgtcttctgatgccatcacagctTCCTTCTCAGAAGAGACACCTGAAAAAGGAGAAGCAGGCTGCATATGCTGCTGACACCTGTCTCAAGGCAGATGTGAATggtaggtgaaatctagcagccactgagtgcacaaacctgcaccttattttt Alignment from Spaln_aa2Genome CACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG aggcaggtgtaaaaacagtagactgaatgtgtcttctgatgccatcacagcttccttctcagaagagACACCTGAAAAAGGAGAAGCAGGCTGCATATGCTGCTGACACCTGTCTCAAGGCAGATGTGAATGgtaggtgaaatctagcagccactgagtgcacaaacctgcaccttattttt Alignment from Spaln_nt2Genome CTTCCTTTTCAGAAGACAC-CCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG aggcaggtgtaaaaacagtagactgaatgtgtcttctgatgccatcacagCTTCCTTCTCAGAAGAGACACCTGAAAAAGGAGAAGCAGGCTGCATATGCTGCTGACACCTGTCTCAAGGCAGATGTGAATGgtaggtgaaatctagcagccactgagtgcacaaacctgcaccttattttt Alignment from Pairagon CTTCCTTTTCAGAAGACAC-CCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG aggcaggtgtaaaaacagtagactgaatgtgtcttctgatgccatcacagCTTCCTTCTCAGAAGAGACACCTGAAAAAGGAGAAGCAGGCTGCATATGCTGCTGACACCTGTCTCAAGGCAGATGTGAATGgtaggtgaaatctagcagccactgagtgcacaaacctgcaccttattttt Alignment from Exonerate_protein2genome CTTCCTTTTCAGAAGACACC-CTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG aggcaggtgtaaaaacagtagactgaatgtgtcttctgatgccatcacagCTTCCTTCTCAGAAGAGACACCTGAAAAAGGAGAAGCAGGCTGCATATGCTGCTGACACCTGTCTCAAGGCAGATGTGAATGgtaggtgaaatctagcagccactgagtgcacaaacctgcaccttattttt Alignment from Exonerate_coding2genome CTTCCTTTTCAGAAGACACC-CTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG aggcaggtgtaaaaacagtagactgaatgtgtcttctgatgccatcacagCTTCCTTCTCAGAAGAGACACCTGAAAAAGGAGAAGCAGGCTGCATATGCTGCTGACACCTGTCTCAAGGCAGATGTGAATGgtaggtgaaatctagcagccactgagtgcacaaacctgcaccttattttt Alignment from GeneWise CACCCTGAAAAAGGAGAAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG aggcaggtgtaaaaacagtagactgaatgtgtcttctgatgccatcacagcttccttctcagaagagACACCTGAAAAAGGAGAAGCAGGCTGCATATGCTGCTGACACCTGTCTCAAGGCAGATGTGAATGgtaggtgaaatctagcagccactgagtgcacaaacctgcaccttattttt #### Coro1b_ID352_2 --> 0 - 0 Original Alignment ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCT-GTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaaattaggagctttgggtcgtcttttggtcctgtgcttgccccacagACTGGCCGTGTTGACAAGGCATTCCCAACAGTATGTGGGCACACAGGGCCTCGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGATTGCACTGTCATGgtaacaaaaaatctgttcaagctagctgggctcaagatgcgcttaagggg Alignment from CESAR ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCT-GTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaaattaggagctttgggtcgtcttttggtcctgtgcttgccccacagACTGGCCGTGTTGACAAGGCATTCCCAACAGTATGTGGGCACACAGGGCCTCGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGATTGCACTGTCATGgtaacaaaaaatctgttcaagctagctgggctcaagatgcgcttaagggg Alignment from Spaln_aa2Genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCT-GTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaaattaggagctttgggtcgtcttttggtcctgtgcttgccccacagACTGGCCGTGTTGACAAGGCATTCCCAACAGTATGTGGGCACACAGGGCCTcGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGATTGCACTGTCATGgtaacaaaaaatctgttcaagctagctgggctcaagatgcgcttaagggg Alignment from Spaln_nt2Genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCT-GTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaaattaggagctttgggtcgtcttttggtcctgtgcttgccccacagACTGGCCGTGTTGACAAGGCATTCCCAACAGTATGTGGGCACACAGGGCCTCGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGATTGCACTGTCATGgtaacaaaaaatctgttcaagctagctgggctcaagatgcgcttaagggg Alignment from Pairagon ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCT-GTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaaattaggagctttgggtcgtcttttggtcctgtgcttgccccacagACTGGCCGTGTTGACAAGGCATTCCCAACAGTATGTGGGCACACAGGGCCTCGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGATTGCACTGTCATGgtaacaaaaaatctgttcaagctagctgggctcaagatgcgcttaagggg Alignment from Exonerate_protein2genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCT-GTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaaattaggagctttgggtcgtcttttggtcctgtgcttgccccacagACTGGCCGTGTTGACAAGGCATTCCCAACAGTATGTGGGCACACAGGGCCTCGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGATTGCACTGTCATGgtaacaaaaaatctgttcaagctagctgggctcaagatgcgcttaagggg Alignment from Exonerate_coding2genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCT-GTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaaattaggagctttgggtcgtcttttggtcctgtgcttgccccacagACTGGCCGTGTTGACAAGGCATTCCCAACAGTATGTGGGCACACAGGGCCTCGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGATTGCACTGTCATGgtaacaaaaaatctgttcaagctagctgggctcaagatgcgcttaagggg Alignment from GeneWise ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGTGGGCACACGGGGCCT-GTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG gggaaattaggagctttgggtcgtcttttggtcctgtgcttgccccacagACTGGCCGTGTTGACAAGGCATTCCCAACAGTATGTGGGCACACAGGGCCTCGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAAGATTGCACTGTCATGgtaacaaaaaatctgttcaagctagctgggctcaagatgcgcttaagggg #### Coro1b_ID353_3 --> 0 - 1 Original Alignment GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC------AAGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAAT-GTGCTTCTCAGTGCAg caacctccctcctgacagtggacctgtctcttcctttctctcctgtccagGTTTGGCAGATCCCAGAAAATGGGTTGACT---CCCCTGACAGAGCCAGTAGTTGTGCCTGAGGGGCATACAATTAAACGACGTGTGGGCATTACTACTTGGCACCCTACAGCCCAGATCCGTGCTTCTTGGTGCTggtgggcaccatacctacaccatgctctctacccttctccagaattatagt Alignment from CESAR GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC------AAGCGCGTGGGCATTATCACCTGGCACCCCACAGCC-CGAAATGTGCTTCTCAGTGCAg caacctccctcctgacagtggacctgtctcttcctttctctcctgtccagGTTTGGCAGATCCCAGAAAATGGGTTGACT---CCCCTGACAGAGCCAGTAGTTGTGCCTGAGGGGCATACAATTAAACGACGTGTGGGCATTACTACTTGGCACCCTACAGCCCAGATCCGTGCTTCTTGGTGCTggtgggcaccatacctacaccatgctctctacccttctccagaattatagt Alignment from Spaln_aa2Genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACCAAG------CGCGTGGGCATTATCACCTGGCACCCCACAGCC-CGAAATGTGCTTCTCAGTGCAG caacctccctcctgacagtggacctgtctcttcctttctctcctgtccagGTTTGGCAGATCCCAGAAAATGGGTTG---ACTCCCCTGACAGAGCCAGTAGTTGTGCCTGAGGGGCATACAATTAAACGACGTGTGGGCATTACTACTTGGCACCCTACAGCCcAGATCCGTGCTTCTTGGTGCTGgtgggcaccatacctacaccatgctctctacccttctccagaattatagt Alignment from Spaln_nt2Genome TGACCTCCCCTCTGACA GAGCCAGTAGTGGTGCTCGAGGGGCATACCAAG------CGCGTGGGCATTATCACCTGGCACCCCACAGCCC-GAAATGTGCTTCTCAGTGCAG CAACCTCCCTCCTGACAgtggacctgtctcttcctttctctcctgtccaggtttggcagatcccagaaaatgggttgactcccctgacag-AGCCAGTAGTTGTGCCTGAGGGGCATACAATTAAACGACGTGTGGGCATTACTACTTGGCACCCTACAGCCCAGATCCGTGCTTCTTGGTGCTGgtgggcaccatacctacaccatgctctctacccttctccagaattatagt Alignment from Pairagon TGACCTCC------------------------------------------------------------------------CCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACCA------AGCGCGTGGGCATTATCACCTGGCACCCCACAGCCC-GAAATGTGCTTCTCAGTGCAG CAACCTCCCTCCTGACAGTGGACCTGTCTCTTCCTTTCTCTCCTGTCCAGGTTTGGCAGATCCCAGAAAATGGGTTGACTCCCCTGACAGAGCCAGTAGTTGTGCCTGAGGGGCATACAATTAAACGACGTGTGGGCATTACTACTTGGCACCCTACAGCCCAGATCCGTGCTTCTTGGTGCTGgtgggcaccatacctacaccatgctctctacccttctccagaattatagt Alignment from Exonerate_protein2genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC------AAGCGCGTGGGCATTATCACCTGGCACCCCACAGCC-CGAAATGTGCTTCTCAGTGCAG caacctccctcctgacagtggacctgtctcttcctttctctcctgtccagGTTTGGCAGATCCCAGAAAATGGGTTGACT---CCCCTGACAGAGCCAGTAGTTGTGCCTGAGGGGCATACAATTAAACGACGTGTGGGCATTACTACTTGGCACCCTACAGCCCAGATCCGTGCTTCTTGGTGCTGgtgggcaccatacctacaccatgctctctacccttctccagaattatagt Alignment from Exonerate_coding2genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC------AAGCGCGTGGGCATTATCACCTGGCACCCCACAGCC-CGAAATGTGCTTCTCAGTGCAG caacctccctcctgacagtggacctgtctcttcctttctctcctgtccagGTTTGGCAGATCCCAGAAAATGGGTTGACT---CCCCTGACAGAGCCAGTAGTTGTGCCTGAGGGGCATACAATTAAACGACGTGTGGGCATTACTACTTGGCACCCTACAGCCCAGATCCGTGCTTCTTGGTGCTGgtgggcaccatacctacaccatgctctctacccttctccagaattatagt Alignment from GeneWise GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC------AAGCGCGTGGGCATTATCACCTGGCACCCCACAGCCCGAAAT- caacctccctcctgacagtggacctgtctcttcctttctctcctgtccagGTTTGGCAGATCCCAGAAAATGGGTTGACT---CCCCTGACAGAGCCAGTAGTTGTGCCTGAGGGGCATACAATTAAACGACGTGTGGGCATTACTACTTGGCACCCTACAGCCCAGATCCgtgcttcttggtgctggtgggcaccatacctacaccatgctctctacccttctccagaattatagt #### Coro1b_ID354_4 --> 2 - 0 Original Alignment gtTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTC-CGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccacaagtatgtgtcgggctaattgaatgtctttgttccatggctgcaggtTGTGACAATGTGGTACTTATCTGGAATGTGGGTGCTGCAGAGGAGCTGTACCGTTTGGACAGCTTGCATCCTGACCTCGCCTATAATGTGAGCTGGAACCACATTGGCAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGCGTTCCGAATCACTGATCCTAGGCGGGGCACCCTGGTTGCAgtaagtacaaacggtaaatagtacatcatccaaattcagggccttgatcc Alignment from CESAR gtTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTC-CGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccacaagtatgtgtcgggctaattgaatgtctttgttccatggctgcaggtTGTGACAATGTGGTACTTATCTGGAATGTGGGTGCTGCAGAGGAGCTGTACCGTTTGGACAGCTTGCATCCTGACCTCGCCTATAATGTGAGCTGGAACCACATTGGCAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGCGTTCCGAATCACTGATCCTAGGCGGGGCACCCTGGTTGCAgtaagtacaaacggtaaatagtacatcatccaaattcagggccttgatcc Alignment from Spaln_aa2Genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTC-CGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccacaagtatgtgtcgggctaattgaatgtctttgttccatggctgcagGTTGTGACAATGTGGTACTTATCTGGAATGTGGGTGCTGCAGAGGAGCTGTACCGTTTGGACAGCTTGCATCCTGACCTCGCCTATAATGTGAGCTGGAACCACATTGGCAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGCGTTcCGAATCACTGATCCTAGGCGGGGCACCCTGGTTGCAgtaagtacaaacggtaaatagtacatcatccaaattcagggccttgatcc Alignment from Spaln_nt2Genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCG-TCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccacaagtatgtgtcgggctaattgaatgtctttgttccatggctgcagGTTGTGACAATGTGGTACTTATCTGGAATGTGGGTGCTGCAGAGGAGCTGTACCGTTTGGACAGCTTGCATCCTGACCTCGCCTATAATGTGAGCTGGAACCACATTGGCAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGCGTTCCGAATCACTGATCCTAGGCGGGGCACCCTGGTTGCAgtaagtacaaacggtaaatagtacatcatccaaattcagggccttgatcc Alignment from Pairagon GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCG-TCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccacaagtatgtgtcgggctaattgaatgtctttgttccatggctgcagGTTGTGACAATGTGGTACTTATCTGGAATGTGGGTGCTGCAGAGGAGCTGTACCGTTTGGACAGCTTGCATCCTGACCTCGCCTATAATGTGAGCTGGAACCACATTGGCAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGCGTTCCGAATCACTGATCCTAGGCGGGGCACCCTGGTTGCAgtaagtacaaacggtaaatagtacatcatccaaattcagggccttgatcc Alignment from Exonerate_protein2genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTC-CGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccacaagtatgtgtcgggctaattgaatgtctttgttccatggctgcagGTTGTGACAATGTGGTACTTATCTGGAATGTGGGTGCTGCAGAGGAGCTGTACCGTTTGGACAGCTTGCATCCTGACCTCGCCTATAATGTGAGCTGGAACCACATTGGCAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGCGTTCCGAATCACTGATCCTAGGCGGGGCACCCTGGTTGCAgtaagtacaaacggtaaatagtacatcatccaaattcagggccttgatcc Alignment from Exonerate_coding2genome GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGCGTC-CGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccacaagtatgtgtcgggctaattgaatgtctttgttccatggctgcagGTTGTGACAATGTGGTACTTATCTGGAATGTGGGTGCTGCAGAGGAGCTGTACCGTTTGGACAGCTTGCATCCTGACCTCGCCTATAATGTGAGCTGGAACCACATTGGCAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGCGTTCCGAATCACTGATCCTAGGCGGGGCACCCTGGTTGCAgtaagtacaaacggtaaatagtacatcatccaaattcagggccttgatcc Alignment from GeneWise GTTGTGACAATGTGGTACTTATCTGGAATGTGGGCACTGCAGAGGAGCTGTACCGTCTGGACAGCTTGCACCCCGACCTCATCTACAACGTGAGCTGGAACCACAATGGCAGCCTCTTTTGCTCAGCTTGCAAGGACAAGAGC-GTCCGAATCATCGATCCTAGGCGGGGCACCCTGGTGGCA tccacaagtatgtgtcgggctaattgaatgtctttgttccatggctgcagGTTGTGACAATGTGGTACTTATCTGGAATGTGGGTGCTGCAGAGGAGCTGTACCGTTTGGACAGCTTGCATCCTGACCTCGCCTATAATGTGAGCTGGAACCACATTGGCAGCTTCTTTTGTTCAGCCTGCAAAGACAAGAGCGTTCCGAATCACTGATCCTAGGCGGGGCACCCTGGTTGCAgtaagtacaaacggtaaatagtacatcatccaaattcagggccttgatcc #### Coro1b_ID355_5 --> 0 - 0 Original Alignment GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGT-GAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccgccctgtactctttttttttttgaacctcagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCGATGGAAAGGTGTTCTCCACAGGTTTCAGCCACATGAGTCGAACGGCAGCTGGCACTCTGGGACCCAgtgagagatacaggaagaccattgcaagggaggtctgtgacctatgcttg Alignment from CESAR GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGT-GAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccgccctgtactctttttttttttgaacctcagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCGATGGAAAGGTGTTCTCCACAGGTTTCAGCCACATGAGTCGAACGGCAGCTGGCACTCTGGGACCCAgtgagagatacaggaagaccattgcaagggaggtctgtgacctatgcttg Alignment from Spaln_aa2Genome GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGT-GAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccgccctgtactctttttttttttgaacctcagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCGATGGAAAGGTGTTCTCCACAGGTTTCAGCCACATGAGTcGAACGGCAGCTGGCACTCTGGGACCCAgtgagagatacaggaagaccattgcaagggaggtctgtgacctatgcttg Alignment from Spaln_nt2Genome GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGT-GAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccgccctgtactctttttttttttgaacctcagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCGATGGAAAGGTGTTCTCCACAGGTTTCAGCCACATGAGTCGAACGGCAGCTGGCACTCTGGGACCCAgtgagagatacaggaagaccattgcaagggaggtctgtgacctatgcttg Alignment from Pairagon GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGT-GAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccgccctgtactctttttttttttgaacctcagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCGATGGAAAGGTGTTCTCCACAGGTTTCAGCCACATGAGTCGAACGGCAGCTGGCACTCTGGGACCCAgtgagagatacaggaagaccattgcaagggaggtctgtgacctatgcttg Alignment from Exonerate_protein2genome GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGT-GAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccgccctgtactctttttttttttgaacctcagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCGATGGAAAGGTGTTCTCCACAGGTTTCAGCCACATGAGTCGAACGGCAGCTGGCACTCTGGGACCCAgtgagagatacaggaagaccattgcaagggaggtctgtgacctatgcttg Alignment from Exonerate_coding2genome GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATGAGT-GAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccgccctgtactctttttttttttgaacctcagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCGATGGAAAGGTGTTCTCCACAGGTTTCAGCCACATGAGTCGAACGGCAGCTGGCACTCTGGGACCCAgtgagagatacaggaagaccattgcaagggaggtctgtgacctatgcttg Alignment from GeneWise GAACGTGAAAAGGCTCACGAGGGGGCCCGGCCCATGCGGGCCATCTTTCTAGCTGACGGGAAGGTGTTCACCACAGGTTTCAGCCGCATG-AGTGAACGGCAGCTGGCGCTCTGGGACCCA aaattcagggccttgatccgccctgtactctttttttttttgaacctcagGAACGTGAAAAGGCTCATGAGGGGGCCCGGCCCATGCGGGCCATCTTTGTAGCCGATGGAAAGGTGTTCTCCACAGGTTTCAGCCACATGAGTCGAACGGCAGCTGGCACTCTGGGACCCAgtgagagatacaggaagaccattgcaagggaggtctgtgacctatgcttg #### Coro1b_ID356_6 --> 0 - 0 Original Alignment GAAAACCTTGAGGAGCCCATGGCCCTG-CAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttagaaagaggtgatgctgcatcaaccggtgtcttctcttctctttcagGAAAACCTCGAGGAGCCCATGGCTCTGCCAGGAGCTGGATTCAAGCAATGGGGGTCTTCTGCCATTCTATGACCCTGACTCTAGTGTGGTCTATGTCTGTGGCAAGgtaagtctgtatgggcagcatactaaagctgaacagaaaggaaggatttc Alignment from CESAR GAAAACCTTGAGGAGCCCATGGCCCTG-CAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttagaaagaggtgatgctgcatcaaccggtgtcttctcttctctttcagGAAAACCTCGAGGAGCCCATGGCTCTGCCAGGAGCTGGATTCAAGCAATGGGGGTCTTCTGCCATTCTATGACCCTGACTCTAGTGTGGTCTATGTCTGTGGCAAGgtaagtctgtatgggcagcatactaaagctgaacagaaaggaaggatttc Alignment from Spaln_aa2Genome GAAAACCTTGAGGAGCCCATGGCCCTG-CAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttagaaagaggtgatgctgcatcaaccggtgtcttctcttctctttcagGAAAACCTCGAGGAGCCCATGGCTCTGcCAGGAGCTGGATTCAAGCAATGGGGGTCTTCTGCCATTCTATGACCCTGACTCTAGTGTGGTCTATGTCTGTGGCAAGgtaagtctgtatgggcagcatactaaagctgaacagaaaggaaggatttc Alignment from Spaln_nt2Genome GAAAACCTTGAGGAGCCCATGGCCCTGC-AGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttagaaagaggtgatgctgcatcaaccggtgtcttctcttctctttcagGAAAACCTCGAGGAGCCCATGGCTCTGCCAGGAGCTGGATTCAAGCAATGGGGGTCTTCTGCCATTCTATGACCCTGACTCTAGTGTGGTCTATGTCTGTGGCAAGgtaagtctgtatgggcagcatactaaagctgaacagaaaggaaggatttc Alignment from Pairagon GAAAACCTTGAGGAGCCCATGGCCCTG-CAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttagaaagaggtgatgctgcatcaaccggtgtcttctcttctctttcagGAAAACCTCGAGGAGCCCATGGCTCTGCCAGGAGCTGGATTCAAGCAATGGGGGTCTTCTGCCATTCTATGACCCTGACTCTAGTGTGGTCTATGTCTGTGGCAAGgtaagtctgtatgggcagcatactaaagctgaacagaaaggaaggatttc Alignment from Exonerate_protein2genome GAAAACCTTGAGGAGCCCATGGCCCTG-CAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttagaaagaggtgatgctgcatcaaccggtgtcttctcttctctttcagGAAAACCTCGAGGAGCCCATGGCTCTGCCAGGAGCTGGATTCAAGCAATGGGGGTCTTCTGCCATTCTATGACCCTGACTCTAGTGTGGTCTATGTCTGTGGCAAGgtaagtctgtatgggcagcatactaaagctgaacagaaaggaaggatttc Alignment from Exonerate_coding2genome GAAAACCTTGAGGAGCCCATGGCCCTG-CAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttagaaagaggtgatgctgcatcaaccggtgtcttctcttctctttcagGAAAACCTCGAGGAGCCCATGGCTCTGCCAGGAGCTGGATTCAAGCAATGGGGGTCTTCTGCCATTCTATGACCCTGACTCTAGTGTGGTCTATGTCTGTGGCAAGgtaagtctgtatgggcagcatactaaagctgaacagaaaggaaggatttc Alignment from GeneWise GAAAACCTTGAGGAGCCCATGGCC-CTGCAGGAGCTGGATTCAAGCAATGGGGCTCTACTGCCCTTTTATGACCCAGACACCAGTGTGGTCTATGTCTGTGGCAAG tttagaaagaggtgatgctgcatcaaccggtgtcttctcttctctttcagGAAAACCTCGAGGAGCCCATGGCTCTGCCAGGAGCTGGATTCAAGCAATGGGGGTCTTCTGCCATTCTATGACCCTGACTCTAGTGTGGTCTATGTCTGTGGCAAGgtaagtctgtatgggcagcatactaaagctgaacagaaaggaaggatttc #### Csf2ra_ID13430_10 --> 1 - 0 Original Alignment gTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTG-TCCGACGACGTGCGAGTGAACCCTGAG ttggacacccaggtgcatgctactctgcatttttatcccgtctctttcaggTTGGAGGTGACACGCCGACTCTTCCCACCCATCCCAGGGATCAGGGACAAGGTGCTCTGACGATGTGCGAGTGAACCCTGAGgtgagaagtcataggcactagcggtgggagttgagcgtgacactggactc Alignment from CESAR gTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTG-TCCGACGACGTGCGAGTGAACCCTGAG ttggacacccaggtgcatgctactctgcatttttatcccgtctctttcaggTTGGAGGTGACACGCCGACTCTTCCCACCCATCCCAGGGATCAGGGACAAGGTGCTCTGACGATGTGCGAGTGAACCCTGAGgtgagaagtcataggcactagcggtgggagttgagcgtgacactggactc Alignment from Spaln_aa2Genome GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTG-TCCGACGACGTGCGAGTGAACCCTGAG ttggacacccaggtgcatgctactctgcatttttatcccgtctctttcagGTTGGAGGTGACACGCCGACTCTTCCCACCCATCCCAGGGATCAGGGACAAGGTGcTCTGACGATGTGCGAGTGAACCCTGAGgtgagaagtcataggcactagcggtgggagttgagcgtgacactggactc Alignment from Spaln_nt2Genome GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTG-TCCGACGACGTGCGAGTGAACCCTGAG ttggacacccaggtgcatgctactctgcatttttatcccgtctctttcagGTTGGAGGTGACACGCCGACTCTTCCCACCCATCCCAGGGATCAGGGACAAGGTGCTCTGACGATGTGCGAGTGAACCCTGAGgtgagaagtcataggcactagcggtgggagttgagcgtgacactggactc Alignment from Pairagon GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTG-TCCGACGACGTGCGAGTGAACCCTGAG ttggacacccaggtgcatgctactctgcatttttatcccgtctctttcagGTTGGAGGTGACACGCCGACTCTTCCCACCCATCCCAGGGATCAGGGACAAGGTGCTCTGACGATGTGCGAGTGAACCCTGAGgtgagaagtcataggcactagcggtgggagttgagcgtgacactggactc Alignment from Exonerate_protein2genome GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTG-TCCGACGACGTGCGAGTGAACCCTGAG ttggacacccaggtgcatgctactctgcatttttatcccgtctctttcagGTTGGAGGTGACACGCCGACTCTTCCCACCCATCCCAGGGATCAGGGACAAGGTGCTCTGACGATGTGCGAGTGAACCCTGAGgtgagaagtcataggcactagcggtgggagttgagcgtgacactggactc Alignment from Exonerate_coding2genome GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTG-TCCGACGACGTGCGAGTGAACCCTGAG ttggacacccaggtgcatgctactctgcatttttatcccgtctctttcagGTTGGAGGTGACACGCCGACTCTTCCCACCCATCCCAGGGATCAGGGACAAGGTGCTCTGACGATGTGCGAGTGAACCCTGAGgtgagaagtcataggcactagcggtgggagttgagcgtgacactggactc Alignment from GeneWise GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATCAGGGACAAGGTG-TCCGACGACGTGCGAGTGAACCCTGAG ttggacacccaggtgcatgctactctgcatttttatcccgtctctttcagGTTGGAGGTGACACGCCGACTCTTCCCACCCATCCCAGGGATCAGGGACAAGGTGCTCTGACGATGTGCGAGTGAACCCTGAGgtgagaagtcataggcactagcggtgggagttgagcgtgacactggactc #### Csf2ra_ID13431_9 --> 2 - 2 Original Alignment agGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCA-GTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGag acatgaacagatcacttctagtttgctagtgtctccctctgttctcccagatGCAGAGGACACACGGGTGCCTGGTGCACTCCTGTACACAGTAACTGCCTGTGCGCGTCCTGCTGTGCGCACTGGTGCTCGGAGTGACTTGTAGGaggtgagccaaaggggcattatcatgaacaagggtgtgagcagttggacacc Alignment from CESAR agGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCA-GTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGag acatgaacagatcacttctagtttgctagtgtctccctctgttctcccagatGCAGAGGACACACGGGTGCCTGGTGCACTCCTGTACACAGTAACTGCCTGTGCGCGTCCTGCTGTGCGCACTGGTGCTCGGAGTGACTTGTAGGaggtgagccaaaggggcattatcatgaacaagggtgtgagcagttggacacc Alignment from Spaln_aa2Genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCA-GTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagatcacttctagtttgctagtgtctccctctgttctcccagATGCAGAGGACACACGGGTGCCTGGTGCACTCCTGTACACAGTAACTGCCTGTGCGcGTCCTGCTGTGCGCACTGGTGCTCGGAGTGACTTGTAGGAGgtgagccaaaggggcattatcatgaacaagggtgtgagcagttggacacc Alignment from Spaln_nt2Genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCA-GTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagatcacttctagtttgctagtgtctccctctgttctcccagATGCAGAGGACACACGGGTGCCTGGTGCACTCCTGTACACAGTAACTGCCTGTGCGCGTCCTGCTGTGCGCACTGGTGCTCGGAGTGACTTGTAGGAGgtgagccaaaggggcattatcatgaacaagggtgtgagcagttggacacc Alignment from Pairagon AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCA-GTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagatcacttctagtttgctagtgtctccctctgttctcccagATGCAGAGGACACACGGGTGCCTGGTGCACTCCTGTACACAGTAACTGCCTGTGCGCGTCCTGCTGTGCGCACTGGTGCTCGGAGTGACTTGTAGGAGgtgagccaaaggggcattatcatgaacaagggtgtgagcagttggacacc Alignment from Exonerate_protein2genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCA-GTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagatcacttctagtttgctagtgtctccctctgttctcccagATGCAGAGGACACACGGGTGCCTGGTGCACTCCTGTACACAGTAACTGCCTGTGCGCGTCCTGCTGTGCGCACTGGTGCTCGGAGTGACTTGTAGGAGgtgagccaaaggggcattatcatgaacaagggtgtgagcagttggacacc Alignment from Exonerate_coding2genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCA-GTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagatcacttctagtttgctagtgtctccctctgttctcccagATGCAGAGGACACACGGGTGCCTGGTGCACTCCTGTACACAGTAACTGCCTGTGCGCGTCCTGCTGTGCGCACTGGTGCTCGGAGTGACTTGTAGGAGgtgagccaaaggggcattatcatgaacaagggtgtgagcagttggacacc Alignment from GeneWise AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGC-GCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagatcacttctagtttgctagtgtctccctctgttctcccagATGCAGAGGACACACGGGTGCCTGGTGCACTCCTGTACACAGTAACTGCCTGTGCGCGTCCTGCTGTGCGCACTGGTGCTCGGAGTGACTTGTAGGAGgtgagccaaaggggcattatcatgaacaagggtgtgagcagttggacacc #### Csf2ra_ID13432_8 --> 0 - 1 Original Alignment GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGC-CCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCg taagataagttcacactctcagcccaatttctcctgcctctggttttcagGTCCTGGTTGTGGAGGAGACCCGCCTCACCTTCCCTAGCCCCTGCTCCCCATGGATGGCACAAGGTCAAAGTCCGGGCAGGTGACACAAGGATGAAGCACTGGGGTAAATGG------GCCCATCCTCTCggtaagtgtaggtgtctcgacccattcccccaaatacatgcctgctgtcca Alignment from CESAR GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCC-GCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCg taagataagttcacactctcagcccaatttctcctgcctctggttttcagGTCCTGGTTGTGGAGGAGACCCGCCTCACCTTCCCTAGCCCCTGCTCCCCATGGATGGCACAAGGTCAAAGTCCGGGCAGGTGACACAAGGATGAAGCACTGGGGTAAATGG------GCCCATCCTCTCggtaagtgtaggtgtctcgacccattcccccaaatacatgcctgctgtcca Alignment from Spaln_aa2Genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGC-CCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG taagataagttcacactctcagcccaatttctcctgcctctggttttcagGTCCTGGTTGTGGAGGAGACCCGCCTCACCTTCCCTAGCcCCTGCTCCCCATGGATGGCACAAGGTCAAAGTCCGGGCAGGTGACACAAGGATGAAGCACTGGGGTAAATGG------GCCCATCCTCTCGgtaagtgtaggtgtctcgacccattcccccaaatacatgcctgctgtcca Alignment from Spaln_nt2Genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCC-GCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG taagataagttcacactctcagcccaatttctcctgcctctggttttcagGTCCTGGTTGTGGAGGAGACCCGCCTCACCTTCCCTAGCCCCTGCTCCCCATGGATGGCACAAGGTCAAAGTCCGGGCAGGTGACACAAGGATGAAGCACTGGGGTAAATGG------GCCCATCCTCTCGgtaagtgtaggtgtctcgacccattcccccaaatacatgcctgctgtcca Alignment from Pairagon GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGCCCC-GCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG taagataagttcacactctcagcccaatttctcctgcctctggttttcagGTCCTGGTTGTGGAGGAGACCCGCCTCACCTTCCCTAGCCCCTGCTCCCCATGGATGGCACAAGGTCAAAGTCCGGGCAGGTGACACAAGGATGAAGCACTGGGGTAAATGG------GCCCATCCTCTCGgtaagtgtaggtgtctcgacccattcccccaaatacatgcctgctgtcca Alignment from Exonerate_protein2genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGC-CCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG taagataagttcacactctcagcccaatttctcctgcctctggttttcagGTCCTGGTTGTGGAGGAGACCCGCCTCACCTTCCCTAGCCCCTGCTCCCCATGGATGGCACAAGGTCAAAGTCCGGGCAGGTGACACAAGGATGAAGCACTGGGGTAAATGG------GCCCATCCTCTCGgtaagtgtaggtgtctcgacccattcccccaaatacatgcctgctgtcca Alignment from Exonerate_coding2genome GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCCAGC-CCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG taagataagttcacactctcagcccaatttctcctgcctctggttttcagGTCCTGGTTGTGGAGGAGACCCGCCTCACCTTCCCTAGCCCCTGCTCCCCATGGATGGCACAAGGTCAAAGTCCGGGCAGGTGACACAAGGATGAAGCACTGGGGTAAATGG------GCCCATCCTCTCGgtaagtgtaggtgtctcgacccattcccccaaatacatgcctgctgtcca Alignment from GeneWise GTGCTCGTCGTGGAGGAGACCCGCCTCGCCTTCCCC-AGCCCCGCCCCCCACGGAGGTCACAAGGTCAAGGTGCGCGCGGGCGACACGAGGATGAAGCACTGGGGCGAATGGAGTCCCGCCCATCCTCTCG taagataagttcacactctcagcccaatttctcctgcctctggttttcagGTCCTGGTTGTGGAGGAGACCCGCCTCACCTTCCCTAGCCCCTGCTCCCCATGGATGGCACAAGGTCAAAGTCCGGGCAGGTGACACAAGGATGAAGCACTGGGGTAAATGG------GCCCATCCTCTCGgtaagtgtaggtgtctcgacccattcccccaaatacatgcctgctgtcca #### Csf2ra_ID13433_7 --> 0 - 0 Original Alignment AGCGCAGAGCCAGGAAGC-ACACCCCGGAAG atgccaagggcttgtcaaaatccacagccttggtgtcctctgttttacagAGCGCAGAACCAGGAAGCCACACCCCGGCAGgtaagctgagtagatgcagcaactggcctggattgtactataggagtaca Alignment from CESAR AGCGCAGAGCCAGGAAGC-ACACCCCGGAAG atgccaagggcttgtcaaaatccacagccttggtgtcctctgttttacagAGCGCAGAACCAGGAAGCCACACCCCGGCAGgtaagctgagtagatgcagcaactggcctggattgtactataggagtaca Alignment from Spaln_aa2Genome AGCGCAGAGCCAGGAAGCACACCCCGG atgccaagggcttgtcaaaatccacagccttggtgtcctctgttttacagAGCGCAGAACCAGGAAGCCACACCCCGgcaggtaagctgagtagatgcagcaactggcctggattgtactataggagtaca Alignment from Spaln_nt2Genome AGCGCAGAGCCAGGAAGC-ACACCCCGGAAG atgccaagggcttgtcaaaatccacagccttggtgtcctctgttttacagAGCGCAGAACCAGGAAGCCACACCCCGGCAGgtaagctgagtagatgcagcaactggcctggattgtactataggagtaca Alignment from Pairagon AGCGCAGAGCCAGGAAG-CACACCCCGGAAG atgccaagggcttgtcaaaatccacagccttggtgtcctctgttttacagAGCGCAGAACCAGGAAGCCACACCCCGGCAGgtaagctgagtagatgcagcaactggcctggattgtactataggagtaca Alignment from Exonerate_protein2genome AGCGCAGAGCCAGGAAGC-ACACCCCGGAAG atgccaagggcttgtcaaaatccacagccttggtgtcctctgttttacagAGCGCAGAACCAGGAAGCCACACCCCGGCAGgtaagctgagtagatgcagcaactggcctggattgtactataggagtaca Alignment from Exonerate_coding2genome atgccaagggcttgtcaaaatccacagccttggtgtcctctgttttacagagcgcagaaccaggaagccacaccccggcaggtaagctgagtagatgcagcaactggcctggattgtactataggagtaca Alignment from GeneWise atgccaagggcttgtcaaaatccacagccttggtgtcctctgttttacagagcgcagaaccaggaagccacaccccggcaggtaagctgagtagatgcagcaactggcctggattgtactataggagtaca #### Csf2ra_ID13435_5 --> 1 - 1 Original Alignment gGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTG-ACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCg ctttctataacctcattgctgtctctgataccccctttaccggctcatagaGGTCATGATGTGGCACGCTGCATGGCTGATCCTGGGGATGATGTCATCACCCAGTGCATTGCAAATGATTTATCCCTGCTGGGGAGTGAGGCCTATTTAGTCGTACACTGGTCGAAGCGGGGCGGGGCCAGTGTGGTTTCTAGATGATGTGGTGGCTACAAAGGCACTCggtaatgttgtggttatgagtaggtgtagggcttctaagtggcaacctgga Alignment from CESAR gGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTG-ACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCg ctttctataacctcattgctgtctctgataccccctttaccggctcatagaGGTCATGATGTGGCACGCTGCATGGCTGATCCTGGGGATGATGTCATCACCCAGTGCATTGCAAATGATTTATCCCTGCTGGGGAGTGAGGCCTATTTAGTCGTACACTGGTCGAAGCGGGGCGGGGCCAGTGTGGTTTCTAGATGATGTGGTGGCTACAAAGGCACTCggtaatgttgtggttatgagtaggtgtagggcttctaagtggcaacctgga Alignment from Spaln_aa2Genome GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTG-ACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG ctttctataacctcattgctgtctctgataccccctttaccggctcatagAGGTCATGATGTGGCACGCTGCATGGCTGATCCTGGGGATGATGTCATCACCCAGTGCATTGCAAATGATTTATCCCTGCTGGGGAGTGAGGCCTATTTAGTCGTAcACTGGTCGAAGCGGGGCGGGGCCAGTGTGGTTTCTAGATGATGTGGTGGCTACAAAGGCACTCGgtaatgttgtggttatgagtaggtgtagggcttctaagtggcaacctgga Alignment from Spaln_nt2Genome GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTG-ACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG ctttctataacctcattgctgtctctgataccccctttaccggctcatagAGGTCATGATGTGGCACGCTGCATGGCTGATCCTGGGGATGATGTCATCACCCAGTGCATTGCAAATGATTTATCCCTGCTGGGGAGTGAGGCCTATTTAGTCGTACACTGGTCGAAGCGGGGCGGGGCCAGTGTGGTTTCTAGATGATGTGGTGGCTACAAAGGCACTCGgtaatgttgtggttatgagtaggtgtagggcttctaagtggcaacctgga Alignment from Pairagon GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTG-ACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG ctttctataacctcattgctgtctctgataccccctttaccggctcatagAGGTCATGATGTGGCACGCTGCATGGCTGATCCTGGGGATGATGTCATCACCCAGTGCATTGCAAATGATTTATCCCTGCTGGGGAGTGAGGCCTATTTAGTCGTACACTGGTCGAAGCGGGGCGGGGCCAGTGTGGTTTCTAGATGATGTGGTGGCTACAAAGGCACTCGgtaatgttgtggttatgagtaggtgtagggcttctaagtggcaacctgga Alignment from Exonerate_protein2genome GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTG-ACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG ctttctataacctcattgctgtctctgataccccctttaccggctcatagAGGTCATGATGTGGCACGCTGCATGGCTGATCCTGGGGATGATGTCATCACCCAGTGCATTGCAAATGATTTATCCCTGCTGGGGAGTGAGGCCTATTTAGTCGTACACTGGTCGAAGCGGGGCGGGGCCAGTGTGGTTTCTAGATGATGTGGTGGCTACAAAGGCACTCGgtaatgttgtggttatgagtaggtgtagggcttctaagtggcaacctgga Alignment from Exonerate_coding2genome GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTG-ACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG ctttctataacctcattgctgtctctgataccccctttaccggctcatagAGGTCATGATGTGGCACGCTGCATGGCTGATCCTGGGGATGATGTCATCACCCAGTGCATTGCAAATGATTTATCCCTGCTGGGGAGTGAGGCCTATTTAGTCGTACACTGGTCGAAGCGGGGCGGGGCCAGTGTGGTTTCTAGATGATGTGGTGGCTACAAAGGCACTCGgtaatgttgtggttatgagtaggtgtagggcttctaagtggcaacctgga Alignment from GeneWise GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTC-GTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG ctttctataacctcattgctgtctctgataccccctttaccggctcatagAGGTCATGATGTGGCACGCTGCATGGCTGATCCTGGGGATGATGTCATCACCCAGTGCATTGCAAATGATTTATCCCTGCTGGGGAGTGAGGCCTATTTAGTCGTACACTGGTCGAAGCGGGGCGGGGCCAGTGTGGTTTCTAGATGATGTGGTGGCTACAAAGGCACTCGgtaatgttgtggttatgagtaggtgtagggcttctaagtggcaacctgga #### Csf2ra_ID13437_3 --> 0 - 1 Original Alignment CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGG-AGGCTGAGCTTCGTCAACGAAg cactctcactgcactacttcaccacccttgcatgtgaatcttttttacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACTGGATGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGCAAGCTCAGCTTCGTCAATGAAggtgagtatggatgggggggtttccatgataccattactaagctagcaagt Alignment from CESAR CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGG-AGGCTGAGCTTCGTCAACGAAg cactctcactgcactacttcaccacccttgcatgtgaatcttttttacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACTGGATGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGCAAGCTCAGCTTCGTCAATGAAggtgagtatggatgggggggtttccatgataccattactaagctagcaagt Alignment from Spaln_aa2Genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGG-AGGCTGAGCTTCGTCAACGAAG cactctcactgcactacttcaccacccttgcatgtgaatcttttttacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACTGGATGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGcAAGCTCAGCTTCGTCAATGAAGgtgagtatggatgggggggtttccatgataccattactaagctagcaagt Alignment from Spaln_nt2Genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGG-AGGCTGAGCTTCGTCAACGAAG cactctcactgcactacttcaccacccttgcatgtgaatcttttttacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACTGGATGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGCAAGCTCAGCTTCGTCAATGAAGgtgagtatggatgggggggtttccatgataccattactaagctagcaagt Alignment from Pairagon CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGG-AGGCTGAGCTTCGTCAACGAAG cactctcactgcactacttcaccacccttgcatgtgaatcttttttacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACTGGATGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGCAAGCTCAGCTTCGTCAATGAAGgtgagtatggatgggggggtttccatgataccattactaagctagcaagt Alignment from Exonerate_protein2genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGG-AGGCTGAGCTTCGTCAACGAAG cactctcactgcactacttcaccacccttgcatgtgaatcttttttacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACTGGATGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGCAAGCTCAGCTTCGTCAATGAAGgtgagtatggatgggggggtttccatgataccattactaagctagcaagt Alignment from Exonerate_coding2genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGG-AGGCTGAGCTTCGTCAACGAAG cactctcactgcactacttcaccacccttgcatgtgaatcttttttacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACTGGATGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGCAAGCTCAGCTTCGTCAATGAAGgtgagtatggatgggggggtttccatgataccattactaagctagcaagt Alignment from GeneWise CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTC- cactctcactgcactacttcaccacccttgcatgtgaatcttttttacagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACTGGATGTCAATGGCACAGTTGGGGGTGCAGCCGCGCACTGGCAAGCTCAGCTTCgtcaatgaaggtgagtatggatgggggggtttccatgataccattactaagctagcaagt #### Ctsf_ID674_2 --> 0 - 0 Original Alignment GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCT-TGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaaggggaaagggaggcttggccaatacctgacccacgtgtgttcagGCTGGCCAGGGCTCCCTGTTCTCCCTGGAATCCACACTAGATGAGCCACCTCTGCAATGATCCCTTGGTGTGCCCACTTCCTGAAACAAAGAAAACTGTGgtatataagtggtcacattgttgcagccctcctgtcaagacattggttaa Alignment from CESAR GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCT-TGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaaggggaaagggaggcttggccaatacctgacccacgtgtgttcagGCTGGCCAGGGCTCCCTGTTCTCCCTGGAATCCACACTAGATGAGCCACCTCTGCAATGATCCCTTGGTGTGCCCACTTCCTGAAACAAAGAAAACTGTGgtatataagtggtcacattgttgcagccctcctgtcaagacattggttaa Alignment from Spaln_aa2Genome GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCT-TGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaaggggaaagggaggcttggccaatacctgacccacgtgtgttcagGCTGGCCAGGGCTCCCTGTTCTCCCTGGAATCCACACTAGATGAGCCACCTcTGCAATGATCCCTTGGTGTGCCCACTTCCTGAAACAAAGAAAACTGTGgtatataagtggtcacattgttgcagccctcctgtcaagacattggttaa Alignment from Spaln_nt2Genome GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCT-TGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaaggggaaagggaggcttggccaatacctgacccacgtgtgttcagGCTGGCCAGGGCTCCCTGTTCTCCCTGGAATCCACACTAGATGAGCCACCTCTGCAATGATCCCTTGGTGTGCCCACTTCCTGAAACAAAGAAAACTGTGgtatataagtggtcacattgttgcagccctcctgtcaagacattggttaa Alignment from Pairagon GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCT-TGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaaggggaaagggaggcttggccaatacctgacccacgtgtgttcagGCTGGCCAGGGCTCCCTGTTCTCCCTGGAATCCACACTAGATGAGCCACCTCTGCAATGATCCCTTGGTGTGCCCACTTCCTGAAACAAAGAAAACTGTGgtatataagtggtcacattgttgcagccctcctgtcaagacattggttaa Alignment from Exonerate_protein2genome GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCT-TGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaaggggaaagggaggcttggccaatacctgacccacgtgtgttcagGCTGGCCAGGGCTCCCTGTTCTCCCTGGAATCCACACTAGATGAGCCACCTCTGCAATGATCCCTTGGTGTGCCCACTTCCTGAAACAAAGAAAACTGTGgtatataagtggtcacattgttgcagccctcctgtcaagacattggttaa Alignment from Exonerate_coding2genome GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCACCT-TGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaaggggaaagggaggcttggccaatacctgacccacgtgtgttcagGCTGGCCAGGGCTCCCTGTTCTCCCTGGAATCCACACTAGATGAGCCACCTCTGCAATGATCCCTTGGTGTGCCCACTTCCTGAAACAAAGAAAACTGTGgtatataagtggtcacattgttgcagccctcctgtcaagacattggttaa Alignment from GeneWise GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAGCCACACTAGAGGAGCCA-CCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaaggggaaagggaggcttggccaatacctgacccacgtgtgttcagGCTGGCCAGGGCTCCCTGTTCTCCCTGGAATCCACACTAGATGAGCCACCTCTGCAATGATCCCTTGGTGTGCCCACTTCCTGAAACAAAGAAAACTGTGgtatataagtggtcacattgttgcagccctcctgtcaagacattggttaa #### Ctsw_ID1018_8 --> 2 - 0 Original Alignment caATTGCCCACTACCTGGCCGTGCATGGACCTATCACC-GTGACCATCAACATGAAACTACTCCAG agtagtggtgacacggcaccttcaagacagtaaccttttctctctcacagtaATTGCCCACTATCTTGCTGCACATGGACCCATCACTCGTGACAATCAATATGAAACTACTTCAGgtatttagcacagtaagatgacaaggagaggtgccctgtggaagctcttc Alignment from CESAR caATTGCCCACTACCTGGCCGTGCATGGACCTATCACC-GTGACCATCAACATGAAACTACTCCAG agtagtggtgacacggcaccttcaagacagtaaccttttctctctcacagtaATTGCCCACTATCTTGCTGCACATGGACCCATCACTCGTGACAATCAATATGAAACTACTTCAGgtatttagcacagtaagatgacaaggagaggtgccctgtggaagctcttc Alignment from Spaln_aa2Genome CAATTGCCCACTACCTGGCCGTGCATGGACCTATCACC-GTGACCATCAACATGAAACTACTCCAG agtagtggtgacacggcaccttcaagacagtaaccttttctctctcacagTAATTGCCCACTATCTTGCTGCACATGGACCCATCACTcGTGACAATCAATATGAAACTACTTCAGgtatttagcacagtaagatgacaaggagaggtgccctgtggaagctcttc Alignment from Spaln_nt2Genome CAATTGCCCACTACCTGGCCGTGCATGGACCTATCAC-CGTGACCATCAACATGAAACTACTCCAG agtagtggtgacacggcaccttcaagacagtaaccttttctctctcacagTAATTGCCCACTATCTTGCTGCACATGGACCCATCACTCGTGACAATCAATATGAAACTACTTCAGgtatttagcacagtaagatgacaaggagaggtgccctgtggaagctcttc Alignment from Pairagon CAATTGCCCACTACCTGGCCGTGCATGGACCTATCAC-CGTGACCATCAACATGAAACTACTCCAG agtagtggtgacacggcaccttcaagacagtaaccttttctctctcacagTAATTGCCCACTATCTTGCTGCACATGGACCCATCACTCGTGACAATCAATATGAAACTACTTCAGgtatttagcacagtaagatgacaaggagaggtgccctgtggaagctcttc Alignment from Exonerate_protein2genome CAATTGCCCACTACCTGGCCGTGCATGGACCTATCACC-GTGACCATCAACATGAAACTACTCCAG agtagtggtgacacggcaccttcaagacagtaaccttttctctctcacagTAATTGCCCACTATCTTGCTGCACATGGACCCATCACTCGTGACAATCAATATGAAACTACTTCAGgtatttagcacagtaagatgacaaggagaggtgccctgtggaagctcttc Alignment from Exonerate_coding2genome agtagtggtgacacggcaccttcaagacagtaaccttttctctctcacagtaattgcccactatcttgctgcacatggacccatcactcgtgacaatcaatatgaaactacttcaggtatttagcacagtaagatgacaaggagaggtgccctgtggaagctcttc Alignment from GeneWise CAATTGCCCACTACCTGGCCGTGCATGGACCTATCACC- agtagtggtgacacggcaccttcaagacagtaaccttttctctctcacagTAATTGCCCACTATCTTGCTGCACATGGACCCATCACTCgtgacaatcaatatgaaactacttcaggtatttagcacagtaagatgacaaggagaggtgccctgtggaagctcttc #### Ctsw_ID1021_5 --> 0 - 1 Original Alignment GGAAGCTGCAAA---------------------------TGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAG-GCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGg cagtttgggctaatccaacccaaggacaagtgaactctctcctttggcagAGAAGTTGCAACCATTTCCCTGGCCCATGGATCGGTGTATGCTGCTGGGCCATGGCAGCTGCTGACAACATCCAGCGCTCTGTGGTGCATAAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGggtaaaaggggttaccatgtggtaagccgtgttctctactcatatatacct Alignment from CESAR GGAAGCTGCAAA---------------------------TGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAG-GCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGg cagtttgggctaatccaacccaaggacaagtgaactctctcctttggcagAGAAGTTGCAACCATTTCCCTGGCCCATGGATCGGTGTATGCTGCTGGGCCATGGCAGCTGCTGACAACATCCAGCGCTCTGTGGTGCATAAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGggtaaaaggggttaccatgtggtaagccgtgttctctactcatatatacct Alignment from Spaln_aa2Genome GGAAGCTGCAAA---------------------------TGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAG-GCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG cagtttgggctaatccaacccaaggacaagtgaactctctcctttggcagAGAAGTTGCAACCATTTCCCTGGCCCATGGATCGGTGTATGCTGCTGGGCCATGGCAGCTGCTGACAACATCCAGcGCTCTGTGGTGCATAAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGGgtaaaaggggttaccatgtggtaagccgtgttctctactcatatatacct Alignment from Spaln_nt2Genome GGAAGCTGCAA---------------------------ATGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAG-GCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG cagtttgggctaatccaacccaaggacaagtgaactctctcctttggcagAGAAGTTGCAACCATTTCCCTGGCCCATGGATCGGTGTATGCTGCTGGGCCATGGCAGCTGCTGACAACATCCAGCGCTCTGTGGTGCATAAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGGgtaaaaggggttaccatgtggtaagccgtgttctctactcatatatacct Alignment from Pairagon GGAAGCTGCAA---------------------------ATGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAG-GCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG cagtttgggctaatccaacccaaggacaagtgaactctctcctttggcagAGAAGTTGCAACCATTTCCCTGGCCCATGGATCGGTGTATGCTGCTGGGCCATGGCAGCTGCTGACAACATCCAGCGCTCTGTGGTGCATAAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGGgtaaaaggggttaccatgtggtaagccgtgttctctactcatatatacct Alignment from Exonerate_protein2genome GGAAGCTGCAAATGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAG-GCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG cagtttgggctaatccaacccaaggacaagtgaactctctcctttggcagagaagttgcaaccatttccctggcccaTGGATCGGTGTATGCTGCTGGGCCATGGCAGCTGCTGACAACATCCAGCGCTCTGTGGTGCATAAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGGgtaaaaggggttaccatgtggtaagccgtgttctctactcatatatacct Alignment from Exonerate_coding2genome GGAAGCTGCAAATGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAG-GCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG cagtttgggctaatccaacccaaggacaagtgaactctctcctttggcagagaagttgcaaccatttccctggcccaTGGATCGGTGTATGCTGCTGGGCCATGGCAGCTGCTGACAACATCCAGCGCTCTGTGGTGCATAAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGGgtaaaaggggttaccatgtggtaagccgtgttctctactcatatatacct Alignment from GeneWise GGAAGCTGCAAA---------------------------TGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAG-GCTCTGTGGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGG cagtttgggctaatccaacccaaggacaagtgaactctctcctttggcagAGAAGTTGCAACCATTTCCCTGGCCCATGGATCGGTGTATGCTGCTGGGCCATGGCAGCTGCTGACAACATCCAGCGCTCTGTGGTGCATAAAGCACCAGAAGTTTGTGGATGTCTCAGTCCAGGgtaaaaggggttaccatgtggtaagccgtgttctctactcatatatacct #### Cyp26a1_ID7414_2 --> 0 - 0 Original Alignment CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGC-ACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG cctcacaaagtcacttattacacattacctgtcttccttctctgttgcagCGCAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCATCTACAAGACACATCTGTTTGGCCGGCCAACAGTGCGGGTGATGGGTACAGATAATGTTCGTCGTATTTTGCTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCCACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtattgattggcaggccaccccttcgatggtgtggttgacatcatcctat Alignment from CESAR CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGC-ACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG cctcacaaagtcacttattacacattacctgtcttccttctctgttgcagCGCAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCATCTACAAGACACATCTGTTTGGCCGGCCAACAGTGCGGGTGATGGGTACAGATAATGTTCGTCGTATTTTGCTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCCACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtattgattggcaggccaccccttcgatggtgtggttgacatcatcctat Alignment from Spaln_aa2Genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGC-ACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG cctcacaaagtcacttattacacattacctgtcttccttctctgttgcagCGCAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCATCTACAAGACACATCTGTTTGGCCGGCCAACAGTGCGGGTGATGGGTACAGATAATGTTCGTCGTATTTTGCTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCcACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtattgattggcaggccaccccttcgatggtgtggttgacatcatcctat Alignment from Spaln_nt2Genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCG-CACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG cctcacaaagtcacttattacacattacctgtcttccttctctgttgcagCGCAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCATCTACAAGACACATCTGTTTGGCCGGCCAACAGTGCGGGTGATGGGTACAGATAATGTTCGTCGTATTTTGCTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCCACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtattgattggcaggccaccccttcgatggtgtggttgacatcatcctat Alignment from Pairagon CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCG-CACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG cctcacaaagtcacttattacacattacctgtcttccttctctgttgcagCGCAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCATCTACAAGACACATCTGTTTGGCCGGCCAACAGTGCGGGTGATGGGTACAGATAATGTTCGTCGTATTTTGCTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCCACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtattgattggcaggccaccccttcgatggtgtggttgacatcatcctat Alignment from Exonerate_protein2genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGC-ACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG cctcacaaagtcacttattacacattacctgtcttccttctctgttgcagCGCAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCATCTACAAGACACATCTGTTTGGCCGGCCAACAGTGCGGGTGATGGGTACAGATAATGTTCGTCGTATTTTGCTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCCACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtattgattggcaggccaccccttcgatggtgtggttgacatcatcctat Alignment from Exonerate_coding2genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGC-ACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG cctcacaaagtcacttattacacattacctgtcttccttctctgttgcagCGCAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCATCTACAAGACACATCTGTTTGGCCGGCCAACAGTGCGGGTGATGGGTACAGATAATGTTCGTCGTATTTTGCTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCCACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtattgattggcaggccaccccttcgatggtgtggttgacatcatcctat Alignment from GeneWise CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGC-ACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG cctcacaaagtcacttattacacattacctgtcttccttctctgttgcagCGCAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCATCTACAAGACACATCTGTTTGGCCGGCCAACAGTGCGGGTGATGGGTACAGATAATGTTCGTCGTATTTTGCTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCCACCATCCTGGGTGCTGGCTGCCTCTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtattgattggcaggccaccccttcgatggtgtggttgacatcatcctat #### Cyp26a1_ID7415_3 --> 0 - 0 Original Alignment GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTC-TCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG agaggctaaatgaagaaaggattgtagttgttttctctatgtctgcatagGTTATTATGCAGGCATTCAGCCGGGAGGCACTCCAGTGTTATGTCCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACGCGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCTTGCTAGGCTGTGAGCCAGGCCCAGCGGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGGCATTCGAGGAAATGACCCGCAATCTCTTCCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTgtgagtgagtcagagtctgcacgggcaaaggcagttggctagtgctctgc Alignment from CESAR GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTC-TCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG agaggctaaatgaagaaaggattgtagttgttttctctatgtctgcatagGTTATTATGCAGGCATTCAGCCGGGAGGCACTCCAGTGTTATGTCCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACGCGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCTTGCTAGGCTGTGAGCCAGGCCCAGCGGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGGCATTCGAGGAAATGACCCGCAATCTCTTCCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTgtgagtgagtcagagtctgcacgggcaaaggcagttggctagtttcattt Alignment from Spaln_aa2Genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTC-TCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG agaggctaaatgaagaaaggattgtagttgttttctctatgtctgcatagGTTATTATGCAGGCATTCAGCCGGGAGGCACTCCAGTGTTATGTCCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACGCGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCTTGCTAGGCTGTGAGCCAGGCCCAGCGGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGGCATTCGAGGAAATGACCCGCAATCTCTTCcTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTgtgagtgagtcagagtctgcacgggcaaaggcagttggctagtgctctgc Alignment from Spaln_nt2Genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTC-TCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG agaggctaaatgaagaaaggattgtagttgttttctctatgtctgcatagGTTATTATGCAGGCATTCAGCCGGGAGGCACTCCAGTGTTATGTCCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACGCGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCTTGCTAGGCTGTGAGCCAGGCCCAGCGGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGGCATTCGAGGAAATGACCCGCAATCTCTTCCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTgtgagtgagtcagagtctgcacgggcaaaggcagttggctagtgctctgc Alignment from Pairagon GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTT-CTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG agaggctaaatgaagaaaggattgtagttgttttctctatgtctgcatagGTTATTATGCAGGCATTCAGCCGGGAGGCACTCCAGTGTTATGTCCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACGCGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCTTGCTAGGCTGTGAGCCAGGCCCAGCGGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGGCATTCGAGGAAATGACCCGCAATCTCTTCCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTgtgagtgagtcagagtctgcacgggcaaaggcagttggctagtgctctgc Alignment from Exonerate_protein2genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTC-TCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG agaggctaaatgaagaaaggattgtagttgttttctctatgtctgcatagGTTATTATGCAGGCATTCAGCCGGGAGGCACTCCAGTGTTATGTCCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACGCGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCTTGCTAGGCTGTGAGCCAGGCCCAGCGGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGGCATTCGAGGAAATGACCCGCAATCTCTTCCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTgtgagtgagtcagagtctgcacgggcaaaggcagttggctagtgctctgc Alignment from Exonerate_coding2genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTC-TCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG agaggctaaatgaagaaaggattgtagttgttttctctatgtctgcatagGTTATTATGCAGGCATTCAGCCGGGAGGCACTCCAGTGTTATGTCCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACGCGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCTTGCTAGGCTGTGAGCCAGGCCCAGCGGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGGCATTCGAGGAAATGACCCGCAATCTCTTCCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTgtgagtgagtcagagtctgcacgggcaaaggcagttggctagtgctctgc Alignment from GeneWise GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTC-TCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG agaggctaaatgaagaaaggattgtagttgttttctctatgtctgcatagGTTATTATGCAGGCATTCAGCCGGGAGGCACTCCAGTGTTATGTCCCTGTGATTGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACGCGGCCTCCTGGTCTACCCTGAGGTGAAGCGCCTCATGTTCCGCATTGCCATGCGCATCTTGCTAGGCTGTGAGCCAGGCCCAGCGGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGGCATTCGAGGAAATGACCCGCAATCTCTTCCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTgtgagtgagtcagagtctgcacgggcaaaggcagttggctagtgctctgc #### Cyp26a1_ID7418_6 --> 0 - 0 Original Alignment GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTT-GCTCTGAAGACTTTTGAGCTGAAT tggaatacatgaggatcccatcacgggaacagctttctgtctggccacagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTGATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTCGCTCTGAAGACTTTTGGGCTGAATgtaatggcactccttgtccactggacatagcctttgctcttgcacactat Alignment from CESAR GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTT-GCTCTGAAGACTTTTGAGCTGAAT tggaatacatgaggatcccatcacgggaacagctttctgtctggccacagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTGATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTCGCTCTGAAGACTTTTGGGCTGAATgtaatggcactccttgtccactggacatagcctttgctcttgcacactat Alignment from Spaln_aa2Genome GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTT-GCTCTGAAGACTTTTGAGCTGAAT tggaatacatgaggatcccatcacgggaacagctttctgtctggccacagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTGATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTcGCTCTGAAGACTTTTGGGCTGAATgtaatggcactccttgtccactggacatagcctttgctcttgcacactat Alignment from Spaln_nt2Genome GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTT-GCTCTGAAGACTTTTGAGCTGAAT tggaatacatgaggatcccatcacgggaacagctttctgtctggccacagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTGATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTCGCTCTGAAGACTTTTGGGCTGAATgtaatggcactccttgtccactggacatagcctttgctcttgcacactat Alignment from Pairagon GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTT-GCTCTGAAGACTTTTGAGCTGAAT tggaatacatgaggatcccatcacgggaacagctttctgtctggccacagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTGATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTCGCTCTGAAGACTTTTGGGCTGAATgtaatggcactccttgtccactggacatagcctttgctcttgcacactat Alignment from Exonerate_protein2genome GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTT-GCTCTGAAGACTTTTGAGCTGAAT tggaatacatgaggatcccatcacgggaacagctttctgtctggccacagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTGATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTCGCTCTGAAGACTTTTGGGCTGAATgtaatggcactccttgtccactggacatagcctttgctcttgcacactat Alignment from Exonerate_coding2genome GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTT-GCTCTGAAGACTTTTGAGCTGAAT tggaatacatgaggatcccatcacgggaacagctttctgtctggccacagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTGATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTCGCTCTGAAGACTTTTGGGCTGAATgtaatggcactccttgtccactggacatagcctttgctcttgcacactat Alignment from GeneWise GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTT-GCTCTGAAGACTTTTGAGCTGAAT tggaatacatgaggatcccatcacgggaacagctttctgtctggccacagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTGATTAAGGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTCGCTCTGAAGACTTTTGGGCTGAATgtaatggcactccttgtccactggacatagcctttgctcttgcacactat #### Cyp2c50_ID7861_2 --> 0 - 1 Original Alignment TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTC-CCAGTTTTTGATAAAGCTACTAATGGAATGg ttgaaatgcagtcaaatcttcctaatcttttcctggctttgctctctcagCTATCCAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTGGTGTTACATGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGAAGAGGAAGACTACCCGGTTTTTGATAAAGCTACTAATGGAATGggtgagcatagctgtggaataacagtgagagaatgtgtgagcccaattcca Alignment from CESAR TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCA-GTTTTTGATAAAGCTACTAATGGAATGg ttgaaatgcagtcaaatcttcctaatcttttcctggctttgctctctcagCTATCCAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTGGTGTTACATGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGAAGAGGAAGACTACCCGGTTTTTGATAAAGCTACTAATGGAATGggtgagcatagctgtggaataacagtgagagaatgtgtgagcccaattcca Alignment from Spaln_aa2Genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCA-GTTTTTGATAAAGCTACTAATGGAATGG ttgaaatgcagtcaaatcttcctaatcttttcctggctttgctctctcagCTATCCAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTGGTGTTACATGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGAAGAGGAAGACTACCCgGTTTTTGATAAAGCTACTAATGGAATGGgtgagcatagctgtggaataacagtgagagaatgtgtgagcccaattcca Alignment from Spaln_nt2Genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCT-CCCAGTTTTTGATAAAGCTACTAATGGAATGG ttgaaatgcagtcaaatcttcctaatcttttcctggctttgctctctcagCTATCCAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTGGTGTTACATGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGAAGAGGAAGACTACCCGGTTTTTGATAAAGCTACTAATGGAATGGgtgagcatagctgtggaataacagtgagagaatgtgtgagcccaattcca Alignment from Pairagon TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCT-CCCAGTTTTTGATAAAGCTACTAATGGAATGG ttgaaatgcagtcaaatcttcctaatcttttcctggctttgctctctcagCTATCCAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTGGTGTTACATGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGAAGAGGAAGACTACCCGGTTTTTGATAAAGCTACTAATGGAATGGgtgagcatagctgtggaataacagtgagagaatgtgtgagcccaattcca Alignment from Exonerate_protein2genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTC-CCAGTTTTTGATAAAGCTACTAATGGAATGG ttgaaatgcagtcaaatcttcctaatcttttcctggctttgctctctcagCTATCCAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTGGTGTTACATGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGAAGAGGAAGACTACCCGGTTTTTGATAAAGCTACTAATGGAATGGgtgagcatagctgtggaataacagtgagagaatgtgtgagcccaattcca Alignment from Exonerate_coding2genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTC-CCAGTTTTTGATAAAGCTACTAATGGAATGG ttgaaatgcagtcaaatcttcctaatcttttcctggctttgctctctcagCTATCCAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTGGTGTTACATGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGAAGAGGAAGACTACCCGGTTTTTGATAAAGCTACTAATGGAATGGgtgagcatagctgtggaataacagtgagagaatgtgtgagcccaattcca Alignment from GeneWise TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCA-GTTTTTGATAAAGCTACTAATGGAATGG ttgaaatgcagtcaaatcttcctaatcttttcctggctttgctctctcagCTATCCAAAGTTTATGGCCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTGGTGTTACATGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGAAGAGGAAGACTACCCGGTTTTTGATAAAGCTACTAATGGAATGGgtgagcatagctgtggaataacagtgagagaatgtgtgagcccaattcca #### Cyp2c54_ID7856_2 --> 0 - 1 Original Alignment TTATCAAGAGTTTATGGTCCTGTGTATACTCTATAT-TTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg tgacaagcaggtgtggctacctcacattatggcccgtctgtcccccaaagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATCCTGGGGAGGAAGCCAACTGTGGTATTACATGGATATGAGGCAGTGAAGGAAGCTCTTGTTGACCAAGGGGATGTTTTTGCTGGACGGGGAAGCCTCCCAGTTTTTGATAAAGCTACTAATGGAATGggtgagtattgtgtggtatagtatgtattgtgaaagtacagtgatagccaa Alignment from CESAR TTATCAAGAGTTTATGGTCCTGTGTATACTCTATAT-TTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg tgacaagcaggtgtggctacctcacattatggcccgtctgtcccccaaagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATCCTGGGGAGGAAGCCAACTGTGGTATTACATGGATATGAGGCAGTGAAGGAAGCTCTTGTTGACCAAGGGGATGTTTTTGCTGGACGGGGAAGCCTCCCAGTTTTTGATAAAGCTACTAATGGAATGggtgagtattgtgtggtatagtatgtattgtgaaagtacagtgatagccaa Alignment from Spaln_aa2Genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATAT-TTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaagcaggtgtggctacctcacattatggcccgtctgtcccccaaagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATcCTGGGGAGGAAGCCAACTGTGGTATTACATGGATATGAGGCAGTGAAGGAAGCTCTTGTTGACCAAGGGGATGTTTTTGCTGGACGGGGAAGCCTCCCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagtattgtgtggtatagtatgtattgtgaaagtacagtgatagccaa Alignment from Spaln_nt2Genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATT-TGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaagcaggtgtggctacctcacattatggcccgtctgtcccccaaagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATCCTGGGGAGGAAGCCAACTGTGGTATTACATGGATATGAGGCAGTGAAGGAAGCTCTTGTTGACCAAGGGGATGTTTTTGCTGGACGGGGAAGCCTCCCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagtattgtgtggtatagtatgtattgtgaaagtacagtgatagccaa Alignment from Pairagon TTATCAAGAGTTTATGGTCCTGTGTATACTCTATAT-TTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaagcaggtgtggctacctcacattatggcccgtctgtcccccaaagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATCCTGGGGAGGAAGCCAACTGTGGTATTACATGGATATGAGGCAGTGAAGGAAGCTCTTGTTGACCAAGGGGATGTTTTTGCTGGACGGGGAAGCCTCCCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagtattgtgtggtatagtatgtattgtgaaagtacagtgatagccaa Alignment from Exonerate_protein2genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATAT-TTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaagcaggtgtggctacctcacattatggcccgtctgtcccccaaagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATCCTGGGGAGGAAGCCAACTGTGGTATTACATGGATATGAGGCAGTGAAGGAAGCTCTTGTTGACCAAGGGGATGTTTTTGCTGGACGGGGAAGCCTCCCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagtattgtgtggtatagtatgtattgtgaaagtacagtgatagccaa Alignment from Exonerate_coding2genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATAT-TTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaagcaggtgtggctacctcacattatggcccgtctgtcccccaaagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATCCTGGGGAGGAAGCCAACTGTGGTATTACATGGATATGAGGCAGTGAAGGAAGCTCTTGTTGACCAAGGGGATGTTTTTGCTGGACGGGGAAGCCTCCCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagtattgtgtggtatagtatgtattgtgaaagtacagtgatagccaa Alignment from GeneWise TTATCAAGAGTTTATGGTCCTGTGTATACTCTATAT-TTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaagcaggtgtggctacctcacattatggcccgtctgtcccccaaagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATCCTGGGGAGGAAGCCAACTGTGGTATTACATGGATATGAGGCAGTGAAGGAAGCTCTTGTTGACCAAGGGGATGTTTTTGCTGGACGGGGAAGCCTCCCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagtattgtgtggtatagtatgtattgtgaaagtacagtgatagccaa #### D19Bwg1357e_ID5846_6 --> 2 - 2 Original Alignment gcGACTTGGTTGAATTAAGTAAA-GCCAAATATTCCAGGAATATCGTTAAGAAATTTCTCATGTATgg agcactgcagtgaggagcacagtatgcttcgcctttcttgccttcccaaggtGACTTAGTTGAGTTAAGTAGACGCAAAACATTCCCAGAATATTGTTAAGAAATTTATCATGTATgggtaatcgcaagagcaatagtgtattgaggtgttccttaaaatgataagtg Alignment from CESAR gcGACTTGGTTGAATTAAGTAAA-GCCAAATATTCCAGGAATATCGTTAAGAAATTTCTCATGTATgg agcactgcagtgaggagcacagtatgcttcgcctttcttgccttcccaaggtGACTTAGTTGAGTTAAGTAGACGCAAAACATTCCCAGAATATTGTTAAGAAATTTATCATGTATgggtaatcgcaagagcaatagtgtattgaggtgttccttaaaatgataagtg Alignment from Spaln_aa2Genome GCGACTTGGTTGAATTAAGTAAA-GCCAAATATTCCAGGAATATCGTTAAGAAATTTCTCATGTATGG agcactgcagtgaggagcacagtatgcttcgcctttcttgccttcccaagGTGACTTAGTTGAGTTAAGTAGAcGCAAAACATTCCCAGAATATTGTTAAGAAATTTATCATGTATGGgtaatcgcaagagcaatagtgtattgaggtgttccttaaaatgataagtg Alignment from Spaln_nt2Genome GCGACTTGGTTGAATTAAGTAAA-GCCAAATATTCCAGGAATATCGTTAAGAAATTTCTCATGTATGG agcactgcagtgaggagcacagtatgcttcgcctttcttgccttcccaagGTGACTTAGTTGAGTTAAGTAGACGCAAAACATTCCCAGAATATTGTTAAGAAATTTATCATGTATGGgtaatcgcaagagcaatagtgtattgaggtgttccttaaaatgataagtg Alignment from Pairagon GCGACTTGGTTGAATTAAGTAAA-GCCAAATATTCCAGGAATATCGTTAAGAAATTTCTCATGTATGG agcactgcagtgaggagcacagtatgcttcgcctttcttgccttcccaagGTGACTTAGTTGAGTTAAGTAGACGCAAAACATTCCCAGAATATTGTTAAGAAATTTATCATGTATGGgtaatcgcaagagcaatagtgtattgaggtgttccttaaaatgataagtg Alignment from Exonerate_protein2genome GCGACTTGGTTGAATTAAGTAAA-GCCAAATATTCCAGGAATATCGTTAAGAAATTTCTCATGTATGG agcactgcagtgaggagcacagtatgcttcgcctttcttgccttcccaagGTGACTTAGTTGAGTTAAGTAGACGCAAAACATTCCCAGAATATTGTTAAGAAATTTATCATGTATGGgtaatcgcaagagcaatagtgtattgaggtgttccttaaaatgataagtg Alignment from Exonerate_coding2genome GCGACTTGGTTGAATTAAGTAAA-GCCAAATATTCCAGGAATATCGTTAAGAAATTTCTCATGTATGG agcactgcagtgaggagcacagtatgcttcgcctttcttgccttcccaagGTGACTTAGTTGAGTTAAGTAGACGCAAAACATTCCCAGAATATTGTTAAGAAATTTATCATGTATGGgtaatcgcaagagcaatagtgtattgaggtgttccttaaaatgataagtg Alignment from GeneWise GTAAAGCCAAATATTCCAGGAATATCGTTAAGAAATTTCTCATGTATGG agcactgcagtgaggagcacagtatgcttcgcctttcttgccttcccaaggtgacttagttgagttaagTAGACGCAAAACATTCCCAGAATATTGTTAAGAAATTTATCATGTATGGgtaatcgcaagagcaatagtgtattgaggtgttccttaaaatgataagtg #### D19Ertd737e_ID13192_2 --> 0 - 1 Original Alignment AAATTTCAAGAATTGCATAAAAAAAAT-TCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAg tatctcaaattatgcctacatgtacacatgttttccttttacatttgtagAAATTTCAAGAATTACATAAAAAAAATCTCTGAACAGAAAAATTTAACGCTAAGATTCAGGCAGAAAAAAAGAAAGCGCTCCAAAAAGggtacgtactcttaaatccttaaatctagcttaggatgttggataggctta Alignment from CESAR AAATTTCAAGAATTGCATAAAAAAAAT-TCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAg tatctcaaattatgcctacatgtacacatgttttccttttacatttgtagAAATTTCAAGAATTACATAAAAAAAATCTCTGAACAGAAAAATTTAACGCTAAGATTCAGGCAGAAAAAAAGAAAGCGCTCCAAAAAGggtacgtactcttaaatccttaaatctagcttaggatgttggataggctta Alignment from Spaln_aa2Genome AAATTTCAAGAATTGCATAAAAAAAAT-TCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tatctcaaattatgcctacatgtacacatgttttccttttacatttgtagAAATTTCAAGAATTACATAAAAAAAATcTCTGAACAGAAAAATTTAACGCTAAGATTCAGGCAGAAAAAAAGAAAGCGCTCCAAAAAGGgtacgtactcttaaatccttaaatctagcttaggatgttggataggctta Alignment from Spaln_nt2Genome AAATTTCAAGAATTGCATAAAAAAAAT-TCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tatctcaaattatgcctacatgtacacatgttttccttttacatttgtagAAATTTCAAGAATTACATAAAAAAAATCTCTGAACAGAAAAATTTAACGCTAAGATTCAGGCAGAAAAAAAGAAAGCGCTCCAAAAAGGgtacgtactcttaaatccttaaatctagcttaggatgttggataggctta Alignment from Pairagon AAATTTCAAGAATTGCATAAAAAAAAT-TCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tatctcaaattatgcctacatgtacacatgttttccttttacatttgtagAAATTTCAAGAATTACATAAAAAAAATCTCTGAACAGAAAAATTTAACGCTAAGATTCAGGCAGAAAAAAAGAAAGCGCTCCAAAAAGGgtacgtactcttaaatccttaaatctagcttaggatgttggataggctta Alignment from Exonerate_protein2genome AAATTTCAAGAATTGCATAAAAAAAAT-TCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tatctcaaattatgcctacatgtacacatgttttccttttacatttgtagAAATTTCAAGAATTACATAAAAAAAATCTCTGAACAGAAAAATTTAACGCTAAGATTCAGGCAGAAAAAAAGAAAGCGCTCCAAAAAGGgtacgtactcttaaatccttaaatctagcttaggatgttggataggctta Alignment from Exonerate_coding2genome AAATTTCAAGAATTGCATAAAAAAAAT-TCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAGGCAAATTGAAGAATGAAAAGGAATCTCA tatctcaaattatgcctacatgtacacatgttttccttttacatttgtagAAATTTCAAGAATTACATAAAAAAAATCTCTGAACAGAAAAATTTAACGCTAAGATTCAGGCAGAAAAAAAGAAAGCGCTCCAAAAAGGGTACGTACTCTTAAATCCTTAAATCTAGcttaggatgttggataggctta Alignment from GeneWise AAATTTCAAGAATTGCATAAAAAAAAT-TCTGAACAGAAAAATTCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tatctcaaattatgcctacatgtacacatgttttccttttacatttgtagAAATTTCAAGAATTACATAAAAAAAATCTCTGAACAGAAAAATTTAACGCTAAGATTCAGGCAGAAAAAAAGAAAGCGCTCCAAAAAGGgtacgtactcttaaatccttaaatctagcttaggatgttggataggctta #### Dagla_ID2760_10 --> 0 - 0 Original Alignment GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAG-AAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctgtcaactctaatctgagagcgcaccaccattttgtctttctgctacagGTCTATGAGACTCCCTTTTATGTAGCTGTTGACCATGATAAGCAAGAAAGTGGTGGTCAGCATCCGGGGAACTCTGTCCCCTAAGgtgagtgcaagtgtatctaactttacatgctccagcagttgctgtcctgg Alignment from CESAR GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAG-AAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctgtcaactctaatctgagagcgcaccaccattttgtctttctgctacagGTCTATGAGACTCCCTTTTATGTAGCTGTTGACCATGATAAGCAAGAAAGTGGTGGTCAGCATCCGGGGAACTCTGTCCCCTAAGgtgagtgcaagtgtatctaactttacatgctccagcagttgctgtcctgg Alignment from Spaln_aa2Genome GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAG-AAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctgtcaactctaatctgagagcgcaccaccattttgtctttctgctacagGTCTATGAGACTCCCTTTTATGTAGCTGTTGACCATGATAAGcAAGAAAGTGGTGGTCAGCATCCGGGGAACTCTGTCCCCTAAGgtgagtgcaagtgtatctaactttacatgctccagcagttgctgtcctgg Alignment from Spaln_nt2Genome GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAG-AAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctgtcaactctaatctgagagcgcaccaccattttgtctttctgctacagGTCTATGAGACTCCCTTTTATGTAGCTGTTGACCATGATAAGCAAGAAAGTGGTGGTCAGCATCCGGGGAACTCTGTCCCCTAAGgtgagtgcaagtgtatctaactttacatgctccagcagttgctgtcctgg Alignment from Pairagon GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAG-AAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctgtcaactctaatctgagagcgcaccaccattttgtctttctgctacagGTCTATGAGACTCCCTTTTATGTAGCTGTTGACCATGATAAGCAAGAAAGTGGTGGTCAGCATCCGGGGAACTCTGTCCCCTAAGgtgagtgcaagtgtatctaactttacatgctccagcagttgctgtcctgg Alignment from Exonerate_protein2genome GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAG-AAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctgtcaactctaatctgagagcgcaccaccattttgtctttctgctacagGTCTATGAGACTCCCTTTTATGTAGCTGTTGACCATGATAAGCAAGAAAGTGGTGGTCAGCATCCGGGGAACTCTGTCCCCTAAGgtgagtgcaagtgtatctaactttacatgctccagcagttgctgtcctgg Alignment from Exonerate_coding2genome GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAG-AAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctgtcaactctaatctgagagcgcaccaccattttgtctttctgctacagGTCTATGAGACTCCCTTTTATGTAGCTGTTGACCATGATAAGCAAGAAAGTGGTGGTCAGCATCCGGGGAACTCTGTCCCCTAAGgtgagtgcaagtgtatctaactttacatgctccagcagttgctgtcctgg Alignment from GeneWise GTCTATGAAACTCCCTTCTACGTAGCTGTGGACCATGACAAG-AAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctgtcaactctaatctgagagcgcaccaccattttgtctttctgctacagGTCTATGAGACTCCCTTTTATGTAGCTGTTGACCATGATAAGCAAGAAAGTGGTGGTCAGCATCCGGGGAACTCTGTCCCCTAAGgtgagtgcaagtgtatctaactttacatgctccagcagttgctgtcctgg #### Dak_ID2899_14 --> 0 - 2 Original Alignment CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAG-ACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGaa tcaggcctggctagttccaatcagctcaagctgtctctcttttccttcagCTCTATGGCTTGTTCCTTACTGCTTCTGCACAGCCTCTCAAAGCTAAGCACTGACCTGCCAACCTGGTCTGCTGCTATGGATGCTGGCCTAGAGTCCATGCAGaagtgagccagctggccttatctgttaacagcaggagtgtaaaggtgatccc Alignment from CESAR CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAG-ACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGaa tcaggcctggctagttccaatcagctcaagctgtctctcttttccttcagCTCTATGGCTTGTTCCTTACTGCTTCTGCACAGCCTCTCAAAGCTAAGCACTGACCTGCCAACCTGGTCTGCTGCTATGGATGCTGGCCTAGAGTCCATGCAGaagtgagccagctggccttatctgttaacagcaggagtgtaaaggtgatccc Alignment from Spaln_aa2Genome CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAG-ACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGAA tcaggcctggctagttccaatcagctcaagctgtctctcttttccttcagCTCTATGGCTTGTTCCTTACTGCTTCTGCACAGCCTCTCAAAGCTAAGcACTGACCTGCCAACCTGGTCTGCTGCTATGGATGCTGGCCTAGAGTCCATGCAGAAgtgagccagctggccttatctgttaacagcaggagtgtaaaggtgatccc Alignment from Spaln_nt2Genome CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAG-ACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGAA tcaggcctggctagttccaatcagctcaagctgtctctcttttccttcagCTCTATGGCTTGTTCCTTACTGCTTCTGCACAGCCTCTCAAAGCTAAGCACTGACCTGCCAACCTGGTCTGCTGCTATGGATGCTGGCCTAGAGTCCATGCAGAAgtgagccagctggccttatctgttaacagcaggagtgtaaaggtgatccc Alignment from Pairagon CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAG-ACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGAA tcaggcctggctagttccaatcagctcaagctgtctctcttttccttcagCTCTATGGCTTGTTCCTTACTGCTTCTGCACAGCCTCTCAAAGCTAAGCACTGACCTGCCAACCTGGTCTGCTGCTATGGATGCTGGCCTAGAGTCCATGCAGAAgtgagccagctggccttatctgttaacagcaggagtgtaaaggtgatccc Alignment from Exonerate_protein2genome CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAG-ACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGAA tcaggcctggctagttccaatcagctcaagctgtctctcttttccttcagCTCTATGGCTTGTTCCTTACTGCTTCTGCACAGCCTCTCAAAGCTAAGCACTGACCTGCCAACCTGGTCTGCTGCTATGGATGCTGGCCTAGAGTCCATGCAGAAgtgagccagctggccttatctgttaacagcaggagtgtaaaggtgatccc Alignment from Exonerate_coding2genome CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCCAAG-ACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGAA tcaggcctggctagttccaatcagctcaagctgtctctcttttccttcagCTCTATGGCTTGTTCCTTACTGCTTCTGCACAGCCTCTCAAAGCTAAGCACTGACCTGCCAACCTGGTCTGCTGCTATGGATGCTGGCCTAGAGTCCATGCAGAAgtgagccagctggccttatctgttaacagcaggagtgtaaaggtgatccc Alignment from GeneWise --------------------CTCTATGGCCTGTTCCTGACTGCAGCTGCCCAGCCTCTCAAGGCC-AAGACTGACCTCCCAACCTGGTCTGCTGCCATGGATGCCGGCTTAGAGTCCATGCAGAA tcaggcctggctagttccaatcagctcaagCTGTCTCTCTTTTCCTTCAGCTCTATGGCTTGTTCCTTACTGCTTCTGCACAGCCTCTCAAAGCTAAGCACTGACCTGCCAACCTGGTCTGCTGCTATGGATGCTGGCCTAGAGTCCATGCAGAAgtgagccagctggccttatctgttaacagcaggagtgtaaaggtgatccc #### Dak_ID2901_12 --> 2 - 1 Original Alignment gtGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTG-AATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAg gcttggtaaaccttttctcagctgctagactctggttctttttctcttaggtGTAACATCAAAGCAGATAGCACTGGTG---TATCGGATATGCACCACCCTCATTGGAGCTGAAGAGCACCTGCAACGCA---GATAGAGCTGCTGGTGATGGGGATTGCGATTCCACCCACAGCCGTGCTTCCAAAggtaagtttccttgctctggccacatgggccaatttggcaaggcgtcacat Alignment from CESAR gtGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTG-AATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAg gcttggtaaaccttttctcagctgctagactctggttctttttctcttaggtGTAACATCAAAGCAGATAGCACTGGTG---TATCGGATATGCACCACCCTCATTGGAGCTGAAGAGCACCTGCAACGCA---GATAGAGCTGCTGGTGATGGGGATTGCGATTCCACCCACAGCCGTGCTTCCAAAggtaagtttccttgctctggccacatgggccaatttggcaaggcgtcacat Alignment from Spaln_aa2Genome GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG gcttggtaaaccttttctcagctgctagactctggttctttttctcttagGTGTAACATCAAAGCAGATAGCA---CTGGTGTATCGGATATGCACCACCCTCATTGGAGCTGAAGAGCACCTGCAAC--GCAGATAGAGCTGCTGGTGATGGGGATTGCGATTCCACCCACAGCCGTGCTTCCAAAGgtaagtttccttgctctggccacatgggccaatttggcaaggcgtcacat Alignment from Spaln_nt2Genome GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG gcttggtaaaccttttctcagctgctagactctggttctttttctcttagGTGTAACATCAAAGCAGATAGCAC---TGGTGTATCGGATATGCACCACCCTCATTGGAGCTGAAGAGCACCTGCA--ACGCAGATAGAGCTGCTGGTGATGGGGATTGCGATTCCACCCACAGCCGTGCTTCCAAAGgtaagtttccttgctctggccacatgggccaatttggcaaggcgtcacat Alignment from Pairagon GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTG-AATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG gcttggtaaaccttttctcagctgctagactctggttctttttctcttagGTGTAACATCAAAGCAGATAGCACTGGTGT---ATCGGATATGCACCACCCTCATTGGAGCTGAAGAGCACCTGCAACGC---AGATAGAGCTGCTGGTGATGGGGATTGCGATTCCACCCACAGCCGTGCTTCCAAAGgtaagtttccttgctctggccacatgggccaatttggcaaggcgtcacat Alignment from Exonerate_protein2genome GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTG-AATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG gcttggtaaaccttttctcagctgctagactctggttctttttctcttagGTGTAACATCAAAGCAGATAGCACTGGTGTAT---CGGATATGCACCACCCTCATTGGAGCTGAAGAGCACCTGCAACGCA---GATAGAGCTGCTGGTGATGGGGATTGCGATTCCACCCACAGCCGTGCTTCCAAAGgtaagtttccttgctctggccacatgggccaatttggcaaggcgtcacat Alignment from Exonerate_coding2genome GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTG-AATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG gcttggtaaaccttttctcagctgctagactctggttctttttctcttagGTGTAACATCAAAGCAGATAGCACTGGTGTAT---CGGATATGCACCACCCTCATTGGAGCTGAAGAGCACCTGCAACGCA---GATAGAGCTGCTGGTGATGGGGATTGCGATTCCACCCACAGCCGTGCTTCCAAAGgtaagtttccttgctctggccacatgggccaatttggcaaggcgtcacat Alignment from GeneWise GTGTAACATCAAAGCAGATGGCACTTGTGCTGGATCGGATATGCACCACCCTCATCGGACTGGAGGAGCACCTGAATGCCTTGGACAGGGCTGCTGGTGATGGGGATTGTGGTTCTACCCATAGCCGTGCTGCCAAAG gcttggtaaaccttttctcagctgctagactctggttctttttctcttagGTGTAACATCAAAGCAGATAGCACTGGTGTAT---CGGATATGCACCACCCTCATTGGAGCTGAAGAGCACCTGCAAC--GCAGATAGAGCTGCTGGTGATGGGGATTGCGATTCCACCCACAGCCGTGCTTCCAAAGgtaagtttccttgctctggccacatgggccaatttggcaaggcgtcacat #### Dak_ID2904_9 --> 2 - 1 Original Alignment gcTCTTCAGTGGTGCTGATAGTCAACAAT-CTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGg attcctagcgccagtcacaaggaggctggcctgtccttctcactccccaggtTCTTCAGTGGTGCTGATAGTGAATAACCCTTGGTGGTCTCTCTTTCCGGGAACTGGGTATTATAGCCGATGCTGCCATACGTTTGCTTggtgcggacacttgattggtcatcctagactgtggagaggcccttcaaccc Alignment from CESAR gcTCTTCAGTGGTGCTGATAGTCAACAAT-CTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGg attcctagcgccagtcacaaggaggctggcctgtccttctcactccccaggtTCTTCAGTGGTGCTGATAGTGAATAACCCTTGGTGGTCTCTCTTTCCGGGAACTGGGTATTATAGCCGATGCTGCCATACGTTTGCTTggtgcggacacttgattggtcatcctagactgtggagaggcccttcaaccc Alignment from Spaln_aa2Genome GCTCTTCAGTGGTGCTGATAGTCAACAAT-CTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG attcctagcgccagtcacaaggaggctggcctgtccttctcactccccagGTTCTTCAGTGGTGCTGATAGTGAATAACcCTTGGTGGTCTCTCTTTCCGGGAACTGGGTATTATAGCCGATGCTGCCATACGTTTGCTTGgtgcggacacttgattggtcatcctagactgtggagaggcccttcaaccc Alignment from Spaln_nt2Genome GCTCTTCAGTGGTGCTGATAGTCAACAATC-TGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG attcctagcgccagtcacaaggaggctggcctgtccttctcactccccagGTTCTTCAGTGGTGCTGATAGTGAATAACCCTTGGTGGTCTCTCTTTCCGGGAACTGGGTATTATAGCCGATGCTGCCATACGTTTGCTTGgtgcggacacttgattggtcatcctagactgtggagaggcccttcaaccc Alignment from Pairagon GCTCTTCAGTGGTGCTGATAGTCAACAA-TCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG attcctagcgccagtcacaaggaggctggcctgtccttctcactccccagGTTCTTCAGTGGTGCTGATAGTGAATAACCCTTGGTGGTCTCTCTTTCCGGGAACTGGGTATTATAGCCGATGCTGCCATACGTTTGCTTGgtgcggacacttgattggtcatcctagactgtggagaggcccttcaaccc Alignment from Exonerate_protein2genome GCTCTTCAGTGGTGCTGATAGTCAACAAT-CTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG attcctagcgccagtcacaaggaggctggcctgtccttctcactccccagGTTCTTCAGTGGTGCTGATAGTGAATAACCCTTGGTGGTCTCTCTTTCCGGGAACTGGGTATTATAGCCGATGCTGCCATACGTTTGCTTGgtgcggacacttgattggtcatcctagactgtggagaggcccttcaaccc Alignment from Exonerate_coding2genome GCTCTTCAGTGGTGCTGATAGTCAACAAT-CTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG attcctagcgccagtcacaaggaggctggcctgtccttctcactccccagGTTCTTCAGTGGTGCTGATAGTGAATAACCCTTGGTGGTCTCTCTTTCCGGGAACTGGGTATTATAGCCGATGCTGCCATACGTTTGCTTGgtgcggacacttgattggtcatcctagactgtggagaggcccttcaaccc Alignment from GeneWise GCTCTTCAGTGGTGCTGATAGTCAACAAT-CTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG attcctagcgccagtcacaaggaggctggcctgtccttctcactccccagGTTCTTCAGTGGTGCTGATAGTGAATAACCCTTGGTGGTCTCTCTTTCCGGGAACTGGGTATTATAGCCGATGCTGCCATACGTTTGCTTGgtgcggacacttgattggtcatcctagactgtggagaggcccttcaaccc #### Dak_ID2907_6 --> 2 - 1 Original Alignment gtACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACC-TTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGg ctgctgccacccacaaaattaccatccccatccctgcatctgttacataggtACCCTAGGTGTGACCTTGTCATCCTGCAGTGTCCCTGGCACCACACACACTCTTCGAGCTTGCAGCTGATGAAATAGAGTTAGGCTTGggtgagtccaccgtcatgatgcatcttctacaaacccctcagacatgtaag Alignment from CESAR gtACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACC-TTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGg ctgctgccacccacaaaattaccatccccatccctgcatctgttacataggtACCCTAGGTGTGACCTTGTCATCCTGCAGTGTCCCTGGCACCACACACACTCTTCGAGCTTGCAGCTGATGAAATAGAGTTAGGCTTGggtgagtccaccgtcatgatgcatcttctacaaacccctcagacatgtaag Alignment from Spaln_aa2Genome GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACC-TTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG ctgctgccacccacaaaattaccatccccatccctgcatctgttacatagGTACCCTAGGTGTGACCTTGTCATCCTGCAGTGTCCCTGGCACCACACACACTcTTCGAGCTTGCAGCTGATGAAATAGAGTTAGGCTTGGgtgagtccaccgtcatgatgcatcttctacaaacccctcagacatgtaag Alignment from Spaln_nt2Genome GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACAC-CTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG ctgctgccacccacaaaattaccatccccatccctgcatctgttacatagGTACCCTAGGTGTGACCTTGTCATCCTGCAGTGTCCCTGGCACCACACACACTCTTCGAGCTTGCAGCTGATGAAATAGAGTTAGGCTTGGgtgagtccaccgtcatgatgcatcttctacaaacccctcagacatgtaag Alignment from Pairagon GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACAC-CTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG ctgctgccacccacaaaattaccatccccatccctgcatctgttacatagGTACCCTAGGTGTGACCTTGTCATCCTGCAGTGTCCCTGGCACCACACACACTCTTCGAGCTTGCAGCTGATGAAATAGAGTTAGGCTTGGgtgagtccaccgtcatgatgcatcttctacaaacccctcagacatgtaag Alignment from Exonerate_protein2genome GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACC-TTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG ctgctgccacccacaaaattaccatccccatccctgcatctgttacatagGTACCCTAGGTGTGACCTTGTCATCCTGCAGTGTCCCTGGCACCACACACACTCTTCGAGCTTGCAGCTGATGAAATAGAGTTAGGCTTGGgtgagtccaccgtcatgatgcatcttctacaaacccctcagacatgtaag Alignment from Exonerate_coding2genome GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACACACC-TTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG ctgctgccacccacaaaattaccatccccatccctgcatctgttacatagGTACCCTAGGTGTGACCTTGTCATCCTGCAGTGTCCCTGGCACCACACACACTCTTCGAGCTTGCAGCTGATGAAATAGAGTTAGGCTTGGgtgagtccaccgtcatgatgcatcttctacaaacccctcagacatgtaag Alignment from GeneWise GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCGCCACACAC-ACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG ctgctgccacccacaaaattaccatccccatccctgcatctgttacatagGTACCCTAGGTGTGACCTTGTCATCCTGCAGTGTCCCTGGCACCACACACACTCTTCGAGCTTGCAGCTGATGAAATAGAGTTAGGCTTGGgtgagtccaccgtcatgatgcatcttctacaaacccctcagacatgtaag #### Ddb1_ID2929_14 --> 1 - 1 Original Alignment cCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCA-TTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAg gtgtagcattcattcctgctattaatgttcaaactatcttccatccacagcCACACAGAGATGGAACATGAAGTGGCATGTTTGGATACCACCCCACTTAGGGGATAGCAATGGCCTCTCCCCGCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCTCGTATCCTGAGGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAggtacttctattagtacttccaggtcaaagccctagtaaggttttgttttc Alignment from CESAR cCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCA-TTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAg gtgtagcattcattcctgctattaatgttcaaactatcttccatccacagcCACACAGAGATGGAACATGAAGTGGCATGTTTGGATACCACCCCACTTAGGGGATAGCAATGGCCTCTCCCCGCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCTCGTATCCTGAGGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAggtacttctattagtacttccaggtcaaagccctagtaaggtgtctgtctt Alignment from Spaln_aa2Genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCATTA-GGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG gtgtagcattcattcctgctattaatgttcaaactatcttccatccacagCCACACAGAGATGGAACATGAAGTGGCATGTTTGGATACCACCCCACTTaGGGGATAGCAATGGCCTCTCCCCGCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCTCGTATCCTGAGGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAGgtacttctattagtacttccaggtcaaagccctagtaaggttttgttttc Alignment from Spaln_nt2Genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCA-CCCCATTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG gtgtagcattcattcctgctattaatgttcaaactatcttccatccacagCCACACAGAGATGGAACATGAAGTGGCATGTTTGGATACCACCCCACTTAGGGGATAGCAATGGCCTCTCCCCGCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCTCGTATCCTGAGGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAGgtacttctattagtacttccaggtcaaagccctagtaaggttttgttttc Alignment from Pairagon CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCA-TTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG gtgtagcattcattcctgctattaatgttcaaactatcttccatccacagCCACACAGAGATGGAACATGAAGTGGCATGTTTGGATACCACCCCACTTAGGGGATAGCAATGGCCTCTCCCCGCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCTCGTATCCTGAGGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAGgtacttctattagtacttccaggtcaaagccctagtaaggttttgttttc Alignment from Exonerate_protein2genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCA-TTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG gtgtagcattcattcctgctattaatgttcaaactatcttccatccacagCCACACAGAGATGGAACATGAAGTGGCATGTTTGGATACCACCCCACTTAGGGGATAGCAATGGCCTCTCCCCGCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCTCGTATCCTGAGGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAGgtacttctattagtacttccaggtcaaagccctagtaaggttttgttttc Alignment from Exonerate_coding2genome CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCA-TTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG gtgtagcattcattcctgctattaatgttcaaactatcttccatccacagCCACACAGAGATGGAACATGAAGTGGCATGTTTGGATACCACCCCACTTAGGGGATAGCAATGGCCTCTCCCCGCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCTCGTATCCTGAGGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAGgtacttctattagtacttccaggtcaaagccctagtaaggttttgttttc Alignment from GeneWise CCACACAGAGATGGAACATGAAGTGGCATGCTTGGATATCACCCCA-TTAGGGGACAGCAATGGCCTCTCCCCACTTTGTGCCATTGGACTTTGGACAGACATCTCAGCTCGTATCCTGAAGCTCCCATCCTTTGAACTACTACACAAGGAGATGCTGGGTGGAG gtgtagcattcattcctgctattaatgttcaaactatcttccatccacagCCACACAGAGATGGAACATGAAGTGGCATGTTTGGATACCACCCCACTTAGGGGATAGCAATGGCCTCTCCCCGCTTTGTGCCATTGGACTTTGGACAGATATCTCAGCTCGTATCCTGAGGCTCCCATCCTTTGAACTATTACATAAGGAGATGCTGGGTGGAGgtacttctattagtacttccaggtcaaagccctagtaaggttttgttttc #### Ddb1_ID2931_16 --> 2 - 2 Original Alignment gtTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTC-ATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACag atagcagctttgccctgttttccttcctctgttgattttcttctcctcaggtTTATTGAGTGACCGTAAAAAGGTAACTTTGGGCACCCAGCCCACCGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACaggtacgtctcctatctgtgtcttaaggaggaggcactaactgtagattact Alignment from CESAR gtTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTC-ATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACag atagcagctttgccctgttttccttcctctgttgattttcttctcctcaggtTTATTGAGTGACCGTAAAAAGGTAACTTTGGGCACCCAGCCCACCGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACaggtacgtctcctatctgtgtcttaaggaggaggcactaactgtagattact Alignment from Spaln_aa2Genome GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTC-ATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG atagcagctttgccctgttttccttcctctgttgattttcttctcctcagGTTTATTGAGTGACCGTAAAAAGGTAACTTTGGGCACCCAGCCCACCGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGcATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtacgtctcctatctgtgtcttaaggaggaggcactaactgtagattact Alignment from Spaln_nt2Genome GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGT-CATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG atagcagctttgccctgttttccttcctctgttgattttcttctcctcagGTTTATTGAGTGACCGTAAAAAGGTAACTTTGGGCACCCAGCCCACCGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtacgtctcctatctgtgtcttaaggaggaggcactaactgtagattact Alignment from Pairagon GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGT-CATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG atagcagctttgccctgttttccttcctctgttgattttcttctcctcagGTTTATTGAGTGACCGTAAAAAGGTAACTTTGGGCACCCAGCCCACCGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtacgtctcctatctgtgtcttaaggaggaggcactaactgtagattact Alignment from Exonerate_protein2genome GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTC-ATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG atagcagctttgccctgttttccttcctctgttgattttcttctcctcagGTTTATTGAGTGACCGTAAAAAGGTAACTTTGGGCACCCAGCCCACCGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtacgtctcctatctgtgtcttaaggaggaggcactaactgtagattact Alignment from Exonerate_coding2genome GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTC-ATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG atagcagctttgccctgttttccttcctctgttgattttcttctcctcagGTTTATTGAGTGACCGTAAAAAGGTAACTTTGGGCACCCAGCCCACCGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtacgtctcctatctgtgtcttaaggaggaggcactaactgtagattact Alignment from GeneWise GTTTACTGAGTGACCGTAAAAAGGTGACTTTGGGCACCCAGCCCACGGTGTTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACT-GTCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAGGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAG atagcagctttgccctgttttccttcctctgttgattttcttctcctcagGTTTATTGAGTGACCGTAAAAAGGTAACTTTGGGCACCCAGCCCACCGTGCTGAGGACATTCCGTTCTCTTTCTACCACCAACGTCTTTGCTTGCTCTGACCGGCCCACTGTGCATCTATAGCAGCAATCACAAGTTGGTCTTCTCCAATGTCAACCTCAAGGAAGTGAACTATATGTGTCCTCTCAACTCAGATGGCTATCCTGACAGgtacgtctcctatctgtgtcttaaggaggaggcactaactgtagattact #### Dkk1_ID6482_3 --> 2 - 1 Original Alignment gaATATGCATGCCCTCT-GACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAg caggaggagcagtgaagcaactccctgctgggatgtacaatggttcacaggaATATGCATGCCCTCTCGAGCATAGCCACTTCCCACGAGGGGAAATTGAAGAAAGAACTATTGAAAACCTTGGTAATGACCACAATGCTGCTGCAGGGGATGGATTTCCCAGAAGAACTACATTGGCTTCAAAGATTTATCATACTAAAggtgtgtaagtaacttgagaacttcgcatttcacatttaatatacaaaaac Alignment from CESAR gaATATGCATGCCCTCT-GACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAg caggaggagcagtgaagcaactccctgctgggatgtacaatggttcacaggaATATGCATGCCCTCTCGAGCATAGCCACTTCCCACGAGGGGAAATTGAAGAAAGAACTATTGAAAACCTTGGTAATGACCACAATGCTGCTGCAGGGGATGGATTTCCCAGAAGAACTACATTGGCTTCAAAGATTTATCATACTAAAggtgtgtaagtaacttgagaacttcgcatttcacatttaatatacaaaaac Alignment from Spaln_aa2Genome GAATATGCATGCCCTCT-GACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG caggaggagcagtgaagcaactccctgctgggatgtacaatggttcacagGAATATGCATGCCCTCTcGAGCATAGCCACTTCCCACGAGGGGAAATTGAAGAAAGAACTATTGAAAACCTTGGTAATGACCACAATGCTGCTGCAGGGGATGGATTTCCCAGAAGAACTACATTGGCTTCAAAGATTTATCATACTAAAGgtgtgtaagtaacttgagaacttcgcatttcacatttaatatacaaaaac Alignment from Spaln_nt2Genome GAATATGCATGCCCTCT-GACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG caggaggagcagtgaagcaactccctgctgggatgtacaatggttcacagGAATATGCATGCCCTCTCGAGCATAGCCACTTCCCACGAGGGGAAATTGAAGAAAGAACTATTGAAAACCTTGGTAATGACCACAATGCTGCTGCAGGGGATGGATTTCCCAGAAGAACTACATTGGCTTCAAAGATTTATCATACTAAAGgtgtgtaagtaacttgagaacttcgcatttcacatttaatatacaaaaac Alignment from Pairagon GAATATGCATGCCCTCT-GACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG caggaggagcagtgaagcaactccctgctgggatgtacaatggttcacagGAATATGCATGCCCTCTCGAGCATAGCCACTTCCCACGAGGGGAAATTGAAGAAAGAACTATTGAAAACCTTGGTAATGACCACAATGCTGCTGCAGGGGATGGATTTCCCAGAAGAACTACATTGGCTTCAAAGATTTATCATACTAAAGgtgtgtaagtaacttgagaacttcgcatttcacatttaatatacaaaaac Alignment from Exonerate_protein2genome GAATATGCATGCCCTCT-GACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG caggaggagcagtgaagcaactccctgctgggatgtacaatggttcacagGAATATGCATGCCCTCTCGAGCATAGCCACTTCCCACGAGGGGAAATTGAAGAAAGAACTATTGAAAACCTTGGTAATGACCACAATGCTGCTGCAGGGGATGGATTTCCCAGAAGAACTACATTGGCTTCAAAGATTTATCATACTAAAGgtgtgtaagtaacttgagaacttcgcatttcacatttaatatacaaaaac Alignment from Exonerate_coding2genome GAATATGCATGCCCTCT-GACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG caggaggagcagtgaagcaactccctgctgggatgtacaatggttcacagGAATATGCATGCCCTCTCGAGCATAGCCACTTCCCACGAGGGGAAATTGAAGAAAGAACTATTGAAAACCTTGGTAATGACCACAATGCTGCTGCAGGGGATGGATTTCCCAGAAGAACTACATTGGCTTCAAAGATTTATCATACTAAAGgtgtgtaagtaacttgagaacttcgcatttcacatttaatatacaaaaac Alignment from GeneWise GAATATGCATGCCCTCT-GACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG caggaggagcagtgaagcaactccctgctgggatgtacaatggttcacagGAATATGCATGCCCTCTCGAGCATAGCCACTTCCCACGAGGGGAAATTGAAGAAAGAACTATTGAAAACCTTGGTAATGACCACAATGCTGCTGCAGGGGATGGATTTCCCAGAAGAACTACATTGGCTTCAAAGATTTATCATACTAAAGgtgtgtaagtaacttgagaacttcgcatttcacatttaatatacaaaaac #### Dock8_ID5396_17 --> 1 - 0 Original Alignment gTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTAC-CACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG cctgagtcttgcatcacagctgattccaattatgtttattgtttgtaaaggTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCTGCCAAGCTGACAGTGAATCATCATCTCCTCTTCACCTTCTACCCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCAgtaggcacttaaccagaactggtggtatgctaccttccagtctggtttct Alignment from CESAR gTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTAC-CACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG cctgagtcttgcatcacagctgattccaattatgtttattgtttgtaaaggTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCTGCCAAGCTGACAGTGAATCATCATCTCCTCTTCACCTTCTACCCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCAgtaggcacttaaccagaactggtggtatgctaccttccagtctggtttct Alignment from Spaln_aa2Genome GTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTAC-CACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG cctgagtcttgcatcacagctgattccaattatgtttattgtttgtaaagGTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCTGCCAAGCTGACAGTGAATCATCATCTCCTCTTCACCTTCTACcCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCAgtaggcacttaaccagaactggtggtatgctaccttccagtctggtttct Alignment from Spaln_nt2Genome GTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTA-CCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG cctgagtcttgcatcacagctgattccaattatgtttattgtttgtaaagGTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCTGCCAAGCTGACAGTGAATCATCATCTCCTCTTCACCTTCTACCCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCAgtaggcacttaaccagaactggtggtatgctaccttccagtctggtttct Alignment from Pairagon GTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTA-CCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG cctgagtcttgcatcacagctgattccaattatgtttattgtttgtaaagGTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCTGCCAAGCTGACAGTGAATCATCATCTCCTCTTCACCTTCTACCCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCAgtaggcacttaaccagaactggtggtatgctaccttccagtctggtttct Alignment from Exonerate_protein2genome GTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTAC-CACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG cctgagtcttgcatcacagctgattccaattatgtttattgtttgtaaagGTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCTGCCAAGCTGACAGTGAATCATCATCTCCTCTTCACCTTCTACCCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCAgtaggcacttaaccagaactggtggtatgctaccttccagtctggtttct Alignment from Exonerate_coding2genome GTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTCCTCTTCACCTTCTAC-CACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG cctgagtcttgcatcacagctgattccaattatgtttattgtttgtaaagGTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCTGCCAAGCTGACAGTGAATCATCATCTCCTCTTCACCTTCTACCCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCAgtaggcacttaaccagaactggtggtatgctaccttccagtctggtttct Alignment from GeneWise GTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTCACAGTGAATCATCACCTCCTCTTCACCTTC-TACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG cctgagtcttgcatcacagctgattccaattatgtttattgtttgtaaagGTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCTGCCAAGCTGACAGTGAATCATCATCTCCTCTTCACCTTCTACCCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCAgtaggcacttaaccagaactggtggtatgctaccttccagtctggtttct #### Dpf2_ID1305_8 --> 2 - 1 Original Alignment ccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAG-GAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAg aaagaaagacatgctgacaatagtcaaatcatctcttcattcttccccagccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGCGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAggtttgaccatagcacactgtgctccaggtccagaaacccactatactgct Alignment from CESAR ccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAG-GAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAg aaagaaagacatgctgacaatagtcaaatcatctcttcattcttccccagccAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGCGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAggtttgaccatagcacactgtgctccaggtccagaaacccactatactgct Alignment from Spaln_aa2Genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAG-GAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG aaagaaagacatgctgacaatagtcaaatcatctcttcattcttccccagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGcGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtttgaccatagcacactgtgctccaggtccagaaacccactatactgct Alignment from Spaln_nt2Genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAG-GAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG aaagaaagacatgctgacaatagtcaaatcatctcttcattcttccccagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGCGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtttgaccatagcacactgtgctccaggtccagaaacccactatactgct Alignment from Pairagon CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAG-GAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG aaagaaagacatgctgacaatagtcaaatcatctcttcattcttccccagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGCGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtttgaccatagcacactgtgctccaggtccagaaacccactatactgct Alignment from Exonerate_protein2genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAG-GAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG aaagaaagacatgctgacaatagtcaaatcatctcttcattcttccccagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGCGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtttgaccatagcacactgtgctccaggtccagaaacccactatactgct Alignment from Exonerate_coding2genome CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAG-GAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG aaagaaagacatgctgacaatagtcaaatcatctcttcattcttccccagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGCGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtttgaccatagcacactgtgctccaggtccagaaacccactatactgct Alignment from GeneWise CCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCC-GAGGAGCTAGTGTCCTGTTCCGACTGTGGCCGCTCAG aaagaaagacatgctgacaatagtcaaatcatctcttcattcttccccagCCAAGAAAGGACCTGATGGATTGGCCCTGCCTAACAACTACTGTGACTTCTGCCTAGGAGACTCAAAAATCAACAAGAAGACAGGGCAGCCCGAGCGAGCTAGTGTCCTGTTCTGACTGTGGCCGCTCAGgtttgaccatagcacactgtgctccaggtccagaaacccactatactgct #### Dpp3_ID740_13 --> 0 - 2 Original Alignment ATCCAGAGCTGGTACCGGAGTGGAGAG-ACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGga tgagggacacagctaagccctgatttttcccttcctctcccctcctacagATCCAGAGCTGGTACCGGAGTGGAGAGCACCTGGGATAGTGAATCCAGCACCATTGCCTCTAGGTATGAAGAGTGTCATGCTGAGAGTGTGGGCCTCTACCTCTGTCTCACCCCCCAAGTGTTGgagtaatgaaccattagttaaggacggtaggctcacatcccacactcacact Alignment from CESAR ATCCAGAGCTGGTACCGGAGTGGAGAG-ACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGga tgagggacacagctaagccctgatttttcccttcctctcccctcctacagATCCAGAGCTGGTACCGGAGTGGAGAGCACCTGGGATAGTGAATCCAGCACCATTGCCTCTAGGTATGAAGAGTGTCATGCTGAGAGTGTGGGCCTCTACCTCTGTCTCACCCCCCAAGTGTTGgagtaatgaaccattagttaaggacggtaggctcacatcccacactcacact Alignment from Spaln_aa2Genome ATCCAGAGCTGGTACCGGAGTGGAGAG-ACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tgagggacacagctaagccctgatttttcccttcctctcccctcctacagATCCAGAGCTGGTACCGGAGTGGAGAGcACCTGGGATAGTGAATCCAGCACCATTGCCTCTAGGTATGAAGAGTGTCATGCTGAGAGTGTGGGCCTCTACCTCTGTCTCACCCCCCAAGTGTTGGAgtaatgaaccattagttaaggacggtaggctcacatcccacactcacact Alignment from Spaln_nt2Genome ATCCAGAGCTGGTACCGGAGTGGAGAG-ACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tgagggacacagctaagccctgatttttcccttcctctcccctcctacagATCCAGAGCTGGTACCGGAGTGGAGAGCACCTGGGATAGTGAATCCAGCACCATTGCCTCTAGGTATGAAGAGTGTCATGCTGAGAGTGTGGGCCTCTACCTCTGTCTCACCCCCCAAGTGTTGGAgtaatgaaccattagttaaggacggtaggctcacatcccacactcacact Alignment from Pairagon ATCCAGAGCTGGTACCGGAGTGGAGAG-ACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tgagggacacagctaagccctgatttttcccttcctctcccctcctacagATCCAGAGCTGGTACCGGAGTGGAGAGCACCTGGGATAGTGAATCCAGCACCATTGCCTCTAGGTATGAAGAGTGTCATGCTGAGAGTGTGGGCCTCTACCTCTGTCTCACCCCCCAAGTGTTGGAgtaatgaaccattagttaaggacggtaggctcacatcccacactcacact Alignment from Exonerate_protein2genome ATCCAGAGCTGGTACCGGAGTGGAGAG-ACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tgagggacacagctaagccctgatttttcccttcctctcccctcctacagATCCAGAGCTGGTACCGGAGTGGAGAGCACCTGGGATAGTGAATCCAGCACCATTGCCTCTAGGTATGAAGAGTGTCATGCTGAGAGTGTGGGCCTCTACCTCTGTCTCACCCCCCAAGTGTTGGAgtaatgaaccattagttaaggacggtaggctcacatcccacactcacact Alignment from Exonerate_coding2genome ATCCAGAGCTGGTACCGGAGTGGAGAG-ACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tgagggacacagctaagccctgatttttcccttcctctcccctcctacagATCCAGAGCTGGTACCGGAGTGGAGAGCACCTGGGATAGTGAATCCAGCACCATTGCCTCTAGGTATGAAGAGTGTCATGCTGAGAGTGTGGGCCTCTACCTCTGTCTCACCCCCCAAGTGTTGGAgtaatgaaccattagttaaggacggtaggctcacatcccacactcacact Alignment from GeneWise ATCCAGAGCTGGTACCGGAGTGGAGAG-ACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tgagggacacagctaagccctgatttttcccttcctctcccctcctacagATCCAGAGCTGGTACCGGAGTGGAGAGCACCTGGGATAGTGAATCCAGCACCATTGCCTCTAGGTATGAAGAGTGTCATGCTGAGAGTGTGGGCCTCTACCTCTGTCTCACCCCCCAAGTGTTGGAgtaatgaaccattagttaaggacggtaggctcacatcccacactcacact #### Dpp3_ID743_10 --> 2 - 0 Original Alignment acGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTG-GGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tgtatcttaatcactgctgctacttctgttctgtgttgttttacccacagacGATGACCTGAGACAAACAGAAGGCTTTAAGAACGTATCGCTGCGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAGgtacgtgtggccccccaagcttagggcttaactgctctagtcttagagaa Alignment from CESAR acGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTG-GGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tgtatcttaatcactgctgctacttctgttctgtgttgttttacccacagacGATGACCTGAGACAAACAGAAGGCTTTAAGAACGTATCGCTGCGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAGgtacgtgtggccccccaagcttagggcttaactgctctagtcttagagaa Alignment from Spaln_aa2Genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTG-GGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tgtatcttaatcactgctgctacttctgttctgtgttgttttacccacagACGATGACCTGAGACAAACAGAAGGCTTTAAGAACGTATCGCTGcGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAGgtacgtgtggccccccaagcttagggcttaactgctctagtcttagagaa Alignment from Spaln_nt2Genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTG-GGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tgtatcttaatcactgctgctacttctgttctgtgttgttttacccacagACGATGACCTGAGACAAACAGAAGGCTTTAAGAACGTATCGCTGCGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAGgtacgtgtggccccccaagcttagggcttaactgctctagtcttagagaa Alignment from Pairagon ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTG-GGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tgtatcttaatcactgctgctacttctgttctgtgttgttttacccacagACGATGACCTGAGACAAACAGAAGGCTTTAAGAACGTATCGCTGCGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAGgtacgtgtggccccccaagcttagggcttaactgctctagtcttagagaa Alignment from Exonerate_protein2genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTG-GGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tgtatcttaatcactgctgctacttctgttctgtgttgttttacccacagACGATGACCTGAGACAAACAGAAGGCTTTAAGAACGTATCGCTGCGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAGgtacgtgtggccccccaagcttagggcttaactgctctagtcttagagaa Alignment from Exonerate_coding2genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTG-GGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tgtatcttaatcactgctgctacttctgttctgtgttgttttacccacagACGATGACCTGAGACAAACAGAAGGCTTTAAGAACGTATCGCTGCGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAGgtacgtgtggccccccaagcttagggcttaactgctctagtcttagagaa Alignment from GeneWise ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCG-CTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG tgtatcttaatcactgctgctacttctgttctgtgttgttttacccacagACGATGACCTGAGACAAACAGAAGGCTTTAAGAACGTATCGCTGCGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAGgtacgtgtggccccccaagcttagggcttaactgctctagtcttagagaa #### Dpp3_ID746_7 --> 0 - 2 Original Alignment GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAG-GACAAAGGCCCCATTGTAGAGag gactgaggggatcactcaaagtgaggatctttctctctctctctctgcagGCTTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGCTCAATTGAGGCCCATAAGAGGGGTTCCCACTTCTGGATCCAGCGACAAAGGCCCCATTGTAAAGaggtaaggtgccaaccaaggttccaactccccgaactctcttccaatgcact Alignment from CESAR GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAG-GACAAAGGCCCCATTGTAGAGag gactgaggggatcactcaaagtgaggatctttctctctctctctctgcagGCTTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGCTCAATTGAGGCCCATAAGAGGGGTTCCCACTTCTGGATCCAGCGACAAAGGCCCCATTGTAAAGaggtaaggtgccaaccaaggttccaactccccgaactctcttccaatgcact Alignment from Spaln_aa2Genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAG-GACAAAGGCCCCATTGTAGAGAG gactgaggggatcactcaaagtgaggatctttctctctctctctctgcagGCTTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGCTCAATTGAGGCCCATAAGAGGGGTTCCCACTTCTGGATCCAGcGACAAAGGCCCCATTGTAAAGAGgtaaggtgccaaccaaggttccaactccccgaactctcttccaatgcact Alignment from Spaln_nt2Genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAG-GACAAAGGCCCCATTGTAGAGAG gactgaggggatcactcaaagtgaggatctttctctctctctctctgcagGCTTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGCTCAATTGAGGCCCATAAGAGGGGTTCCCACTTCTGGATCCAGCGACAAAGGCCCCATTGTAAAGAGgtaaggtgccaaccaaggttccaactccccgaactctcttccaatgcact Alignment from Pairagon GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAG-GACAAAGGCCCCATTGTAGAGAG gactgaggggatcactcaaagtgaggatctttctctctctctctctgcagGCTTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGCTCAATTGAGGCCCATAAGAGGGGTTCCCACTTCTGGATCCAGCGACAAAGGCCCCATTGTAAAGAGgtaaggtgccaaccaaggttccaactccccgaactctcttccaatgcact Alignment from Exonerate_protein2genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAG-GACAAAGGCCCCATTGTAGAGAG gactgaggggatcactcaaagtgaggatctttctctctctctctctgcagGCTTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGCTCAATTGAGGCCCATAAGAGGGGTTCCCACTTCTGGATCCAGCGACAAAGGCCCCATTGTAAAGAGgtaaggtgccaaccaaggttccaactccccgaactctcttccaatgcact Alignment from Exonerate_coding2genome GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAG-GACAAAGGCCCCATTGTAGAGAG gactgaggggatcactcaaagtgaggatctttctctctctctctctgcagGCTTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGCTCAATTGAGGCCCATAAGAGGGGTTCCCACTTCTGGATCCAGCGACAAAGGCCCCATTGTAAAGAGgtaaggtgccaaccaaggttccaactccccgaactctcttccaatgcact Alignment from GeneWise GCTTATGCAGCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAG------AG gactgaggggatcactcaaagtgaggatctttctctctctctctctgcagGCTTATGCAGCCAACTGCCACCAGAAGCAAATGCTGGCCCAGTATGTGGAAAGCTTCACTCAGGGCTCAATTGAGGCCCATAAGAGGGGTTCCCACTTCTGGATCCAGCGACAAAGGCCCCATTGTAAAGAGGTAAGgtgccaaccaaggttccaactccccgaactctcttccaatgcact #### Drap1_ID984_6 --> 0 - 2 Original Alignment GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAG-ACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGag cctcacagatgttccagtctctttaatcaacagccccgtgtctaccacagGATGAGTCTGAGGATATGGATACTGATGGGGAAGAGGAGCACACCACAGCTTCCACCTCAGGCCAGTCACCCTCCTGCCCACTATCAGaggtaagtttcacaggggtagcgtaatatttttgttaacctattgatgctag Alignment from CESAR GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAG-ACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGag cctcacagatgttccagtctctttaatcaacagccccgtgtctaccacagGATGAGTCTGAGGATATGGATACTGATGGGGAAGAGGAGCACACCACAGCTTCCACCTCAGGCCAGTCACCCTCCTGCCCACTATCAGaggtaagtttcacaggggtagcgtaatatttttgttaacctattgatgctag Alignment from Spaln_aa2Genome GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAG-ACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG cctcacagatgttccagtctctttaatcaacagccccgtgtctaccacagGATGAGTCTGAGGATATGGATACTGATGGGGAAGAGGAGcACACCACAGCTTCCACCTCAGGCCAGTCACCCTCCTGCCCACTATCAGAGgtaagtttcacaggggtagcgtaatatttttgttaacctattgatgctag Alignment from Spaln_nt2Genome GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAG-ACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG cctcacagatgttccagtctctttaatcaacagccccgtgtctaccacagGATGAGTCTGAGGATATGGATACTGATGGGGAAGAGGAGCACACCACAGCTTCCACCTCAGGCCAGTCACCCTCCTGCCCACTATCAGAGgtaagtttcacaggggtagcgtaatatttttgttaacctattgatgctag Alignment from Pairagon GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAG-ACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG cctcacagatgttccagtctctttaatcaacagccccgtgtctaccacagGATGAGTCTGAGGATATGGATACTGATGGGGAAGAGGAGCACACCACAGCTTCCACCTCAGGCCAGTCACCCTCCTGCCCACTATCAGAGgtaagtttcacaggggtagcgtaatatttttgttaacctattgatgctag Alignment from Exonerate_protein2genome GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAG-ACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG cctcacagatgttccagtctctttaatcaacagccccgtgtctaccacagGATGAGTCTGAGGATATGGATACTGATGGGGAAGAGGAGCACACCACAGCTTCCACCTCAGGCCAGTCACCCTCCTGCCCACTATCAGAGgtaagtttcacaggggtagcgtaatatttttgttaacctattgatgctag Alignment from Exonerate_coding2genome GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAG-ACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG cctcacagatgttccagtctctttaatcaacagccccgtgtctaccacagGATGAGTCTGAGGATATGGATACTGATGGGGAAGAGGAGCACACCACAGCTTCCACCTCAGGCCAGTCACCCTCCTGCCCACTATCAGAGgtaagtttcacaggggtagcgtaatatttttgttaacctattgatgctag Alignment from GeneWise GATGAGTCTGAGGATACAGATACTGATGGGGAAGAAGAG-ACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG cctcacagatgttccagtctctttaatcaacagccccgtgtctaccacagGATGAGTCTGAGGATATGGATACTGATGGGGAAGAGGAGCACACCACAGCTTCCACCTCAGGCCAGTCACCCTCCTGCCCACTATCAGAGgtaagtttcacaggggtagcgtaatatttttgttaacctattgatgctag #### Drap1_ID985_5 --> 1 - 0 Original Alignment CCTCGAag gGGCCGGAAACCGGGCAGC-AGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAaggtaaagagccaggggtctgcgccccctctcatccaaccccaggGGCCGTAAACCAGGTAGCCAGTGGCAAGAAGAATGGGGGCACAGGAAGCAAAGGTAAAGATAAGAAGCTCTCTGGGACAGACTCTGAGCAAGAGgtaaggaaggctggtgggtaatgggttgtgtctgcttttttgtaccttac Alignment from CESAR CCTCGAag gGGCCGGAAACCGGGCAGC-AGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAaggtgagtagccaggggtctgcgccccctctcatccaaccccaggGGCCGTAAACCAGGTAGCCAGTGGCAAGAAGAATGGGGGCACAGGAAGCAAAGGTAAAGATAAGAAGCTCTCTGGGACAGACTCTGAGCAAGAGgtaaggaaggctggtgggtaatgggttgtgtctgcttttttgtaccttac Alignment from Spaln_aa2Genome CCTCGAAG GGGCCGGAAACCGGGCAGC-AGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtaaagagccaggggtctgcgccccctctcatccaaccccagGGGCCGTAAACCAGGTAGCcAGTGGCAAGAAGAATGGGGGCACAGGAAGCAAAGGTAAAGATAAGAAGCTCTCTGGGACAGACTCTGAGCAAGAGgtaaggaaggctggtgggtaatgggttgtgtctgcttttttgtaccttac Alignment from Spaln_nt2Genome CCTCGAAG GGGCCGGAAACCGGGCAGC-AGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtaaagagccaggggtctgcgccccctctcatccaaccccagGGGCCGTAAACCAGGTAGCCAGTGGCAAGAAGAATGGGGGCACAGGAAGCAAAGGTAAAGATAAGAAGCTCTCTGGGACAGACTCTGAGCAAGAGgtaaggaaggctggtgggtaatgggttgtgtctgcttttttgtaccttac Alignment from Pairagon CCTCGAAG GGGCCGGAAACCGGGCAG-CAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtaaagagccaggggtctgcgccccctctcatccaaccccagGGGCCGTAAACCAGGTAGCCAGTGGCAAGAAGAATGGGGGCACAGGAAGCAAAGGTAAAGATAAGAAGCTCTCTGGGACAGACTCTGAGCAAGAGgtaaggaaggctggtgggtaatgggttgtgtctgcttttttgtaccttac Alignment from Exonerate_protein2genome CCTCGAAG GGGCCGGAAACCGGGCAGC-AGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtaaagagccaggggtctgcgccccctctcatccaaccccagGGGCCGTAAACCAGGTAGCCAGTGGCAAGAAGAATGGGGGCACAGGAAGCAAAGGTAAAGATAAGAAGCTCTCTGGGACAGACTCTGAGCAAGAGgtaaggaaggctggtgggtaatgggttgtgtctgcttttttgtaccttac Alignment from Exonerate_coding2genome CCTCGAAG GGGCCGGAAACCGGGCAGC-AGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtaaagagccaggggtctgcgccccctctcatccaaccccagGGGCCGTAAACCAGGTAGCCAGTGGCAAGAAGAATGGGGGCACAGGAAGCAAAGGTAAAGATAAGAAGCTCTCTGGGACAGACTCTGAGCAAGAGgtaaggaaggctggtgggtaatgggttgtgtctgcttttttgtaccttac Alignment from GeneWise TCGAAGGGGCCGGAAACCGGGC---------------------------------------------AGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG TCGAA--GGTAAAGAGCCAGGGGTCTGCGCCCCCTCTCATCCAACCCCAGGGGCCGTAAACCAGGTAGCCAGTGGCAAGAAGAATGGGGGCACAGGAAGCAAAGGTAAAGATAAGAAGCTCTCTGGGACAGACTCTGAGCAAGAGgtaaggaaggctggtgggtaatgggttgtgtctgcttttttgtaccttac #### Drap1_ID986_4 --> 1 - 2 Original Alignment gAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTC-TTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAag gGGCCGGA tcttccccaagtgtttgagaggctgaccgcctccaatccttcttcctcaggATGCAGTGCATTGATGTTGAGCAGCAGTTTGACTTCCTTGAAAGACCTAGTGGCATCAGTGCCTGACATGCAGGGGGACGGGGAGGACAACCATGTAGATGGGGAGAAGGGGCCTCGAaggtgagtagccaggggtctgcgctgtttgtgttccttcctcaggGGCCGTA Alignment from CESAR gAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTC-TTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAag gGGCCGGA tcttccccaagtgtttgagaggctgaccgcctccaatccttcttcctcaggATGCAGTGCATTGATGTTGAGCAGCAGTTTGACTTCCTTGAAAGACCTAGTGGCATCAGTGCCTGACATGCAGGGGGACGGGGAGGACAACCATGTAGATGGGGAGAAGGGGCCTCGAaggtgagtagccaggggtctgcgccccctctcatccaaccccaggGGCCGTA Alignment from Spaln_aa2Genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTC-TTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GGGCCGGA tcttccccaagtgtttgagaggctgaccgcctccaatccttcttcctcagGATGCAGTGCATTGATGTTGAGCAGCAGTTTGACTTCcTTGAAAGACCTAGTGGCATCAGTGCCTGACATGCAGGGGGACGGGGAGGACAACCATGTAGATGGGGAGAAGGGGCCTCGAAGgtgagtagccaggggtctgcgctgtttgtgttccttcctcagGGGCCGTA Alignment from Spaln_nt2Genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTT-CTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GGGCCGGA tcttccccaagtgtttgagaggctgaccgcctccaatccttcttcctcagGATGCAGTGCATTGATGTTGAGCAGCAGTTTGACTTCCTTGAAAGACCTAGTGGCATCAGTGCCTGACATGCAGGGGGACGGGGAGGACAACCATGTAGATGGGGAGAAGGGGCCTCGAAGgtgagtagccaggggtctgcgctgtttgtgttccttcctcagGGGCCGTA Alignment from Pairagon GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTT-CTTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GGGCCGGA tcttccccaagtgtttgagaggctgaccgcctccaatccttcttcctcagGATGCAGTGCATTGATGTTGAGCAGCAGTTTGACTTCCTTGAAAGACCTAGTGGCATCAGTGCCTGACATGCAGGGGGACGGGGAGGACAACCATGTAGATGGGGAGAAGGGGCCTCGAAGgtgagtagccaggggtctgcgctgtttgtgttccttcctcagGGGCCGTA Alignment from Exonerate_protein2genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTC-TTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GGGCCGGA tcttccccaagtgtttgagaggctgaccgcctccaatccttcttcctcagGATGCAGTGCATTGATGTTGAGCAGCAGTTTGACTTCCTTGAAAGACCTAGTGGCATCAGTGCCTGACATGCAGGGGGACGGGGAGGACAACCATGTAGATGGGGAGAAGGGGCCTCGAAGgtgagtagccaggggtctgcgctgtttgtgttccttcctcagGGGCCGTA Alignment from Exonerate_coding2genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTC-TTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GGGCCGGA tcttccccaagtgtttgagaggctgaccgcctccaatccttcttcctcagGATGCAGTGCATTGATGTTGAGCAGCAGTTTGACTTCCTTGAAAGACCTAGTGGCATCAGTGCCTGACATGCAGGGGGACGGGGAGGACAACCATGTAGATGGGGAGAAGGGGCCTCGAAGgtgagtagccaggggtctgcgctgtttgtgttccttcctcagGGGCCGTA Alignment from GeneWise GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTC-TTGAAAGACTTGGTGGCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GGGCCGGA tcttccccaagtgtttgagaggctgaccgcctccaatccttcttcctcagGATGCAGTGCATTGATGTTGAGCAGCAGTTTGACTTCCTTGAAAGACCTAGTGGCATCAGTGCCTGACATGCAGGGGGACGGGGAGGACAACCATGTAGATGGGGAGAAGGGGCCTCGAAGgtgagtagccaggggtctgcgctgtttgtgttccttcctcagGGGCCGTA #### Drap1_ID988_2 --> 0 - 1 Original Alignment GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATT-GGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCt tccaaatgttggggatgcaggaatgaagcatgctctctctgcctccatagACGCGGATCACAAAGATCATGCAGACAGATGAAGAGATTCGGAAAGGTGGCAGCAGCTGTGCCTGTCATCATCtgtaaataaccagggcccagttagtctgaggtgtgggactaaggcactcca Alignment from CESAR GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATT-GGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCt tccaaatgttggggatgcaggaatgaagcatgctctctctgcctccatagACGCGGATCACAAAGATCATGCAGACAGATGAAGAGATTCGGAAAGGTGGCAGCAGCTGTGCCTGTCATCATCtgtaaataaccagggcccagttagtctgaggtgtgggactaaggcactcca Alignment from Spaln_aa2Genome GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATT-GGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT tccaaatgttggggatgcaggaatgaagcatgctctctctgcctccatagACGCGGATCACAAAGATCATGCAGACAGATGAAGAGATTcGGAAAGGTGGCAGCAGCTGTGCCTGTCATCATCTgtaaataaccagggcccagttagtctgaggtgtgggactaaggcactcca Alignment from Spaln_nt2Genome GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATTG-GGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT tccaaatgttggggatgcaggaatgaagcatgctctctctgcctccatagACGCGGATCACAAAGATCATGCAGACAGATGAAGAGATTCGGAAAGGTGGCAGCAGCTGTGCCTGTCATCATCTgtaaataaccagggcccagttagtctgaggtgtgggactaaggcactcca Alignment from Pairagon GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATT-GGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT tccaaatgttggggatgcaggaatgaagcatgctctctctgcctccatagACGCGGATCACAAAGATCATGCAGACAGATGAAGAGATTCGGAAAGGTGGCAGCAGCTGTGCCTGTCATCATCTgtaaataaccagggcccagttagtctgaggtgtgggactaaggcactcca Alignment from Exonerate_protein2genome GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATT-GGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT tccaaatgttggggatgcaggaatgaagcatgctctctctgcctccatagACGCGGATCACAAAGATCATGCAGACAGATGAAGAGATTCGGAAAGGTGGCAGCAGCTGTGCCTGTCATCATCTgtaaataaccagggcccagttagtctgaggtgtgggactaaggcactcca Alignment from Exonerate_coding2genome GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAGATT-GGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT tccaaatgttggggatgcaggaatgaagcatgctctctctgcctccatagACGCGGATCACAAAGATCATGCAGACAGATGAAGAGATTCGGAAAGGTGGCAGCAGCTGTGCCTGTCATCATCTgtaaataaccagggcccagttagtctgaggtgtgggactaaggcactcca Alignment from GeneWise GCGCGGATCAAAAAGATCATGCAGACGGACGAAGAG-ATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCT tccaaatgttggggatgcaggaatgaagcatgctctctctgcctccatagACGCGGATCACAAAGATCATGCAGACAGATGAAGAGATTCGGAAAGGTGGCAGCAGCTGTGCCTGTCATCATCTgtaaataaccagggcccagttagtctgaggtgtgggactaaggcactcca #### Efemp2_ID1029_2 --> 0 - 1 Original Alignment GAATGCACAGATGGCTATGAG-TGGGATGCAGACAGCCAGCACTGCCGGg gtagctagtcgagacagcaataatggtgttttgtgtttatctctcatcagGAATGTACAGATGGCTATGAGCTGGGATGCAGATAGCCAACACTGCCAAggtgagcccttgtttgggtactagccatgctctctgtaactaggagattca Alignment from CESAR GAATGCACAGATGGCTATGAG-TGGGATGCAGACAGCCAGCACTGCCGGg gtagctagtcgagacagcaataatggtgttttgtgtttatctctcatcagGAATGTACAGATGGCTATGAGCTGGGATGCAGATAGCCAACACTGCCAAggtgagcccttgtttgggtactagccatgctctctgtaactaggagattca Alignment from Spaln_aa2Genome GAATGCACAGATGGCTATGAG-TGGGATGCAGACAGCCAGCACTGCCGGG gtagctagtcgagacagcaataatggtgttttgtgtttatctctcatcagGAATGTACAGATGGCTATGAGcTGGGATGCAGATAGCCAACACTGCCAAGgtgagcccttgtttgggtactagccatgctctctgtaactaggagattca Alignment from Spaln_nt2Genome GAATGCACAGATGGCTATGAG-TGGGATGCAGACAGCCAGCACTGCCGGG gtagctagtcgagacagcaataatggtgttttgtgtttatctctcatcagGAATGTACAGATGGCTATGAGCTGGGATGCAGATAGCCAACACTGCCAAGgtgagcccttgtttgggtactagccatgctctctgtaactaggagattca Alignment from Pairagon GAATGCACAGATGGCTATGAG-TGGGATGCAGACAGCCAGCACTGCCGGG gtagctagtcgagacagcaataatggtgttttgtgtttatctctcatcagGAATGTACAGATGGCTATGAGCTGGGATGCAGATAGCCAACACTGCCAAGgtgagcccttgtttgggtactagccatgctctctgtaactaggagattca Alignment from Exonerate_protein2genome GAATGCACAGATGGCTATGAG-TGGGATGCAGACAGCCAGCACTGCCGGG gtagctagtcgagacagcaataatggtgttttgtgtttatctctcatcagGAATGTACAGATGGCTATGAGCTGGGATGCAGATAGCCAACACTGCCAAGgtgagcccttgtttgggtactagccatgctctctgtaactaggagattca Alignment from Exonerate_coding2genome gtagctagtcgagacagcaataatggtgttttgtgtttatctctcatcaggaatgtacagatggctatgagctgggatgcagatagccaacactgccaaggtgagcccttgtttgggtactagccatgctctctgtaactaggagattca Alignment from GeneWise GAATGCACAGATGGCTAT-GAGTGGGATGCAGACAGCCAGCACTGCCGGG gtagctagtcgagacagcaataatggtgttttgtgtttatctctcatcagGAATGTACAGATGGCTATGAGCTGGGATGCAGATAGCCAACACTGCCAAGgtgagcccttgtttgggtactagccatgctctctgtaactaggagattca #### Efemp2_ID1032_5 --> 2 - 1 Original Alignment acATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCA-GGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGg aggggtggtatggcctgtcttccatttatatgttcctttgctgttggcagacATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAATCTGCCAGGCTCATTTCGATGCCAGTGCGAGCCACGGCTTCCAGTTGGGACCTAACATTCGCTCTTGTGTGggtgatgtgctgtgtcctacaaggttctgaggtcctcccgggtgaaccagt Alignment from CESAR acATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCA-GGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGg aggggtggtatggcctgtcttccatttatatgttcctttgctgttggcagacATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAATCTGCCAGGCTCATTTCGATGCCAGTGCGAGCCACGGCTTCCAGTTGGGACCTAACATTCGCTCTTGTGTGggtgatgtgctgtgtcctacaaggttctgaggtcctcccgggtgaaccagt Alignment from Spaln_aa2Genome ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCA-GGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG aggggtggtatggcctgtcttccatttatatgttcctttgctgttggcagACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAATCTGCCAGGCTCATTTCGATGCCAGTGCGAGCCAcGGCTTCCAGTTGGGACCTAACATTCGCTCTTGTGTGGgtgatgtgctgtgtcctacaaggttctgaggtcctcccgggtgaaccagt Alignment from Spaln_nt2Genome ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCA-GGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG aggggtggtatggcctgtcttccatttatatgttcctttgctgttggcagACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAATCTGCCAGGCTCATTTCGATGCCAGTGCGAGCCACGGCTTCCAGTTGGGACCTAACATTCGCTCTTGTGTGGgtgatgtgctgtgtcctacaaggttctgaggtcctcccgggtgaaccagt Alignment from Pairagon ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCA-GGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG aggggtggtatggcctgtcttccatttatatgttcctttgctgttggcagACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAATCTGCCAGGCTCATTTCGATGCCAGTGCGAGCCACGGCTTCCAGTTGGGACCTAACATTCGCTCTTGTGTGGgtgatgtgctgtgtcctacaaggttctgaggtcctcccgggtgaaccagt Alignment from Exonerate_protein2genome ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCA-GGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG aggggtggtatggcctgtcttccatttatatgttcctttgctgttggcagACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAATCTGCCAGGCTCATTTCGATGCCAGTGCGAGCCACGGCTTCCAGTTGGGACCTAACATTCGCTCTTGTGTGGgtgatgtgctgtgtcctacaaggttctgaggtcctcccgggtgaaccagt Alignment from Exonerate_coding2genome ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCA-GGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG aggggtggtatggcctgtcttccatttatatgttcctttgctgttggcagACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAATCTGCCAGGCTCATTTCGATGCCAGTGCGAGCCACGGCTTCCAGTTGGGACCTAACATTCGCTCTTGTGTGGgtgatgtgctgtgtcctacaaggttctgaggtcctcccgggtgaaccagt Alignment from GeneWise ACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAACCTGCCGGGCTCTTTTCGATGCCAGTGTGAGCCA-GGCTTCCAGTTGGGACCTAACAACCGCTCTTGTGTGG aggggtggtatggcctgtcttccatttatatgttcctttgctgttggcagACATAGATGAGTGTCGTTACCGCTATTGCCAGCATCGATGTGTGAATCTGCCAGGCTCATTTCGATGCCAGTGCGAGCCACGGCTTCCAGTTGGGACCTAACATTCGCTCTTGTGTGGgtgatgtgctgtgtcctacaaggttctgaggtcctcccgggtgaaccagt #### Efemp2_ID1035_8 --> 2 - 2 Original Alignment atATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTAC-CGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACaa acttaccatgagtatggtactcaggctcccccaccttctccctctttcagatTTAGATGATTGTGAGACAGGTGCACACCGATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGCTGGTTACCCGCTGTGTGGAGACCAACCGTTGTGTGGAGCCATATGTCCACGTATCAGACaagtgagctcacctggcacccactgactcgtgcaggtccagatgtctgtggg Alignment from CESAR atATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTAC-CGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACaa acttaccatgagtatggtactcaggctcccccaccttctccctctttcagatTTAGATGATTGTGAGACAGGTGCACACCGATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGCTGGTTACCCGCTGTGTGGAGACCAACCGTTGTGTGGAGCCATATGTCCACGTATCAGACaagtgagctcacctggcacccactgactcgtgcaggtccagatgtctgtggg Alignment from Spaln_aa2Genome ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTAC-CGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttaccatgagtatggtactcaggctcccccaccttctccctctttcagATTTAGATGATTGTGAGACAGGTGCACACCGATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGCTGGTTACcCGCTGTGTGGAGACCAACCGTTGTGTGGAGCCATATGTCCACGTATCAGACAAgtgagctcacctggcacccactgactcgtgcaggtccagatgtctgtggg Alignment from Spaln_nt2Genome ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTACC-GCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttaccatgagtatggtactcaggctcccccaccttctccctctttcagATTTAGATGATTGTGAGACAGGTGCACACCGATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGCTGGTTACCCGCTGTGTGGAGACCAACCGTTGTGTGGAGCCATATGTCCACGTATCAGACAAgtgagctcacctggcacccactgactcgtgcaggtccagatgtctgtggg Alignment from Pairagon ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTA-CCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttaccatgagtatggtactcaggctcccccaccttctccctctttcagATTTAGATGATTGTGAGACAGGTGCACACCGATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGCTGGTTACCCGCTGTGTGGAGACCAACCGTTGTGTGGAGCCATATGTCCACGTATCAGACAAgtgagctcacctggcacccactgactcgtgcaggtccagatgtctgtggg Alignment from Exonerate_protein2genome ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTAC-CGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttaccatgagtatggtactcaggctcccccaccttctccctctttcagATTTAGATGATTGTGAGACAGGTGCACACCGATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGCTGGTTACCCGCTGTGTGGAGACCAACCGTTGTGTGGAGCCATATGTCCACGTATCAGACAAgtgagctcacctggcacccactgactcgtgcaggtccagatgtctgtggg Alignment from Exonerate_coding2genome ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTAC-CGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttaccatgagtatggtactcaggctcccccaccttctccctctttcagATTTAGATGATTGTGAGACAGGTGCACACCGATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGCTGGTTACCCGCTGTGTGGAGACCAACCGTTGTGTGGAGCCATATGTCCACGTATCAGACAAgtgagctcacctggcacccactgactcgtgcaggtccagatgtctgtggg Alignment from GeneWise ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAACTTCCATGGGGGTTAC-CGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttaccatgagtatggtactcaggctcccccaccttctccctctttcagATTTAGATGATTGTGAGACAGGTGCACACCGATGTTCTGAGGCCCAAACCTGTGTCAATTTCCATGCTGGTTACCCGCTGTGTGGAGACCAACCGTTGTGTGGAGCCATATGTCCACGTATCAGACAAgtgagctcacctggcacccactgactcgtgcaggtccagatgtctgtggg #### Ehbp1l1_ID1225_10 --> 0 - 2 Original Alignment GCACCACCTACCCTGGTCAGCTCC-AGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGat tgtgaatcagggcacaccccctacccctaccagctcactctgttttacagGCACCACCTACCCTAGTCAGCTCCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTAACCAATGGCTACCGTGGTGTCTGTATAACCAAGTTCACCACATCCTGGCGCAATGGCTTGGCCTTCTGTGCTATTTTACATCGATTCTACCCTGACAAGatgtaagacaagggtcagggggtgggtgagactgccagggcgccatgaacat Alignment from CESAR GCACCACCTACCCTGGTCAGCTCC-AGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGat tgtgaatcagggcacaccccctacccctaccagctcactctgttttacagGCACCACCTACCCTAGTCAGCTCCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTAACCAATGGCTACCGTGGTGTCTGTATAACCAAGTTCACCACATCCTGGCGCAATGGCTTGGCCTTCTGTGCTATTTTACATCGATTCTACCCTGACAAGatgtaagacaagggtcagggggtgggtgagactgccagggcgccatgaacat Alignment from Spaln_aa2Genome GCACCACCTACCCTGGTCAGCTCC-AGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT tgtgaatcagggcacaccccctacccctaccagctcactctgttttacagGCACCACCTACCCTAGTCAGCTCCcAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTAACCAATGGCTACCGTGGTGTCTGTATAACCAAGTTCACCACATCCTGGCGCAATGGCTTGGCCTTCTGTGCTATTTTACATCGATTCTACCCTGACAAGATgtaagacaagggtcagggggtgggtgagactgccagggcgccatgaacat Alignment from Spaln_nt2Genome GCACCACCTACCCTGGTCAGCT-CCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT tgtgaatcagggcacaccccctacccctaccagctcactctgttttacagGCACCACCTACCCTAGTCAGCTCCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTAACCAATGGCTACCGTGGTGTCTGTATAACCAAGTTCACCACATCCTGGCGCAATGGCTTGGCCTTCTGTGCTATTTTACATCGATTCTACCCTGACAAGATgtaagacaagggtcagggggtgggtgagactgccagggcgccatgaacat Alignment from Pairagon GCACCACCTACCCTGGTCAGCT-CCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT tgtgaatcagggcacaccccctacccctaccagctcactctgttttacagGCACCACCTACCCTAGTCAGCTCCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTAACCAATGGCTACCGTGGTGTCTGTATAACCAAGTTCACCACATCCTGGCGCAATGGCTTGGCCTTCTGTGCTATTTTACATCGATTCTACCCTGACAAGATgtaagacaagggtcagggggtgggtgagactgccagggcgccatgaacat Alignment from Exonerate_protein2genome GCACCACCTACCCTGGTCAGCTCC-AGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT tgtgaatcagggcacaccccctacccctaccagctcactctgttttacagGCACCACCTACCCTAGTCAGCTCCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTAACCAATGGCTACCGTGGTGTCTGTATAACCAAGTTCACCACATCCTGGCGCAATGGCTTGGCCTTCTGTGCTATTTTACATCGATTCTACCCTGACAAGATgtaagacaagggtcagggggtgggtgagactgccagggcgccatgaacat Alignment from Exonerate_coding2genome GCACCACCTACCCTGGTCAGCTCC-AGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT tgtgaatcagggcacaccccctacccctaccagctcactctgttttacagGCACCACCTACCCTAGTCAGCTCCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTAACCAATGGCTACCGTGGTGTCTGTATAACCAAGTTCACCACATCCTGGCGCAATGGCTTGGCCTTCTGTGCTATTTTACATCGATTCTACCCTGACAAGATgtaagacaagggtcagggggtgggtgagactgccagggcgccatgaacat Alignment from GeneWise GCACCACCTACCCTGGTCAGCTCC-AGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT tgtgaatcagggcacaccccctacccctaccagctcactctgttttacagGCACCACCTACCCTAGTCAGCTCCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTAACCAATGGCTACCGTGGTGTCTGTATAACCAAGTTCACCACATCCTGGCGCAATGGCTTGGCCTTCTGTGCTATTTTACATCGATTCTACCCTGACAAGATgtaagacaagggtcagggggtgggtgagactgccagggcgccatgaacat #### Ehbp1l1_ID1227_8 --> 2 - 2 Original Alignment ctGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCC-CCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAag gggttgcagtctgaacctacatgacctgcatttctttttcttttccgcagctGCCAGACCCTCTAGTGCTGAAGACACCAGTCCTGCTCCAGTAAGTGCCCCCTGCACCCCCAGTTAGAGCTTTCCGGGGCCAGGGG---GAACCAGCTGCCATGACTGATGGG---GTGGGGCCTGAGACCTCAGAGCCCCCGGCATCTCCACCAGAGACGaggtaaacatcatctaagcttcaaggctgctagaagaggataccacatattc Alignment from CESAR ctGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCC-CCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAag gggttgcagtctgaacctacatgacctgcatttctttttcttttccgcagctGCCAGACCCTCTAGTGCTGAAGACACCAGTCCTGCTCCAGTAAGTGCCCCCTGCACCCCCAGTTAGAGCTTTCCGGGGCCAGGGG---GAACCAGCTGCCATGACTGATGGG---GTGGGGCCTGAGACCTCAGAGCCCCCGGCATCTCCACCAGAGACGaggtaaacatcatctaagcttcaaggctgctagaagaggataccacatattc Alignment from Spaln_aa2Genome CTGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCT-GCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAAG gggttgcagtctgaacctacatgacctgcatttctttttcttttccgcagCTGCCAGACCCTCTAGTGCTGAAGACACCAGTCCTGCTCCAGTAAGTGCCCCCtGCACCCCCAGTTAGAGCTTTCCGGGGCCAGGGG---GAACCAGCTGCCATGACTGATGGG---GTGGGGCCTGAGACCTCAGAGCCCCCGGCATCTCCACCAGAGACGAGgtaaacatcatctaagcttcaaggctgctagaagaggataccacatattc Alignment from Spaln_nt2Genome CTGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCC-CTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAAG gggttgcagtctgaacctacatgacctgcatttctttttcttttccgcagCTGCCAGACCCTCTAGTGCTGAAGACACCAGTCCTGCTCCAGTAAGTGCCCCCTGCACCCCCAGTTAGAGCTTTCCGGGGCCAGGGG---GAACCAGCTGCCATGACTGATGG---GGTGGGGCCTGAGACCTCAGAGCCCCCGGCATCTCCACCAGAGACGAGgtaaacatcatctaagcttcaaggctgctagaagaggataccacatattc Alignment from Pairagon CTGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTG-CCCCTGCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAAG gggttgcagtctgaacctacatgacctgcatttctttttcttttccgcagCTGCCAGACCCTCTAGTGCTGAAGACACCAGTCCTGCTCCAGTAAGTGCCCCCTGCACCCCCAGTTAGAGCTTTCCGGGGCCAGGGG---GAACCAGCTGCCATGACTGATGG---GGTGGGGCCTGAGACCTCAGAGCCCCCGGCATCTCCACCAGAGACGAGgtaaacatcatctaagcttcaaggctgctagaagaggataccacatattc Alignment from Exonerate_protein2genome gggttgcagtctgaacctacatgacctgcatttctttttcttttccgcagctgccagaccctctagtgctgaagacaccagtcctgctccagtaagtgccccctgcacccccagttagagctttccggggccagggggaaccagctgccatgactgatggggtggggcctgagacctcagagcccccggcatctccaccagagacgaggtaaacatcatctaagcttcaaggctgctagaagaggataccacatattc Alignment from Exonerate_coding2genome gggttgcagtctgaacctacatgacctgcatttctttttcttttccgcagctgccagaccctctagtgctgaagacaccagtcctgctccagtaagtgccccctgcacccccagttagagctttccggggccagggggaaccagctgccatgactgatggggtggggcctgagacctcagagcccccggcatctccaccagagacgaggtaaacatcatctaagcttcaaggctgctagaagaggataccacatattc Alignment from GeneWise CTGCCAGACCCTCTAGTGCTGAAGACACCAGCCCTGCCCCAGTGAGTGCCCCT-GCACCCCCGGTCAGGGCCTTCCGGGGCCAGGGGTCAGAACCAGCTGCTATAACCGGGGGCCAGGTGGGGCCTGAAACCCCAGAGCCCCCGCCATCCCCACCAGAGACAAG gggttgcagtctgaacctacatgacctgcatttctttttcttttccgcagCTGCCAGACCCTCTAGTGCTGAAGACACCAGTCCTGCTCCAGTAAGTGCCCCCTGCACCCCCAGTTAGAGCTTTCCGGGGCCAGGGG---GAACCAGCTGCCATGACTGATGGG---GTGGGGCCTGAGACCTCAGAGCCCCCGGCATCTCCACCAGAGACGAGgtaaacatcatctaagcttcaaggctgctagaagaggataccacatattc #### Ehbp1l1_ID1231_4 --> 0 - 0 Original Alignment GACCCTCATGTGGACCAGTAT-GAAACCAAAGAGTGGACTTTTATTATTGAAAAT ttctgatgttctttcccggaaactctgtattttgtgtttacttaccaaagGACCCTCATGTGGACCAGTATCGAAACCAAAGAGTGGACATTTATTATTGAAAATgtaggacactgggacagtatacctccacctctaattgagagtattgcaac Alignment from CESAR GACCCTCATGTGGACCAGTAT-GAAACCAAAGAGTGGACTTTTATTATTGAAAAT ttctgatgttctttcccggaaactctgtattttgtgtttacttaccaaagGACCCTCATGTGGACCAGTATCGAAACCAAAGAGTGGACATTTATTATTGAAAATgtaggacactgggacagtatacctccacctctaattgagagtattgcaac Alignment from Spaln_aa2Genome GACCCTCATGTGGACCAGTAT-GAAACCAAAGAGTGGACTTTTATTATTGAAAAT ttctgatgttctttcccggaaactctgtattttgtgtttacttaccaaagGACCCTCATGTGGACCAGTATcGAAACCAAAGAGTGGACATTTATTATTGAAAATgtaggacactgggacagtatacctccacctctaattgagagtattgcaac Alignment from Spaln_nt2Genome GACCCTCATGTGGACCAGTAT-GAAACCAAAGAGTGGACTTTTATTATTGAAAAT ttctgatgttctttcccggaaactctgtattttgtgtttacttaccaaagGACCCTCATGTGGACCAGTATCGAAACCAAAGAGTGGACATTTATTATTGAAAATgtaggacactgggacagtatacctccacctctaattgagagtattgcaac Alignment from Pairagon GACCCTCATGTGGACCAGTAT-GAAACCAAAGAGTGGACTTTTATTATTGAAAAT ttctgatgttctttcccggaaactctgtattttgtgtttacttaccaaagGACCCTCATGTGGACCAGTATCGAAACCAAAGAGTGGACATTTATTATTGAAAATgtaggacactgggacagtatacctccacctctaattgagagtattgcaac Alignment from Exonerate_protein2genome ttctgatgttctttcccggaaactctgtattttgtgtttacttaccaaaggaccctcatgtggaccagtatcgaaaccaaagagtggacatttattattgaaaatgtaggacactgggacagtatacctccacctctaattgagagtattgcaac Alignment from Exonerate_coding2genome ttctgatgttctttcccggaaactctgtattttgtgtttacttaccaaaggaccctcatgtggaccagtatcgaaaccaaagagtggacatttattattgaaaatgtaggacactgggacagtatacctccacctctaattgagagtattgcaac Alignment from GeneWise GACCCTCATGTGGACCAGTAT-GAAACCAAAGAGTGGACTTTTATTATTGAAAAT ttctgatgttctttcccggaaactctgtattttgtgtttacttaccaaagGACCCTCATGTGGACCAGTATCGAAACCAAAGAGTGGACATTTATTATTGAAAATgtaggacactgggacagtatacctccacctctaattgagagtattgcaac #### Ehbp1l1_ID1232_3 --> 0 - 0 Original Alignment GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACC-GTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG tataagaattcaacaatggtggggaatagactggctccttctgtgtgcagGCCCACAGCTGGCAGCCTGGCATTCAGAATCCATACCTTGGCACTCGCAGTATGGATGGTTCCTGAGAATGTGGACATCTCAGTAACCTTGCACAAGgtgagagcactgagtgtggcatgggcaggcactgcagagagatgggcagg Alignment from CESAR GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACC-GTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG tataagaattcaacaatggtggggaatagactggctccttctgtgtgcagGCCCACAGCTGGCAGCCTGGCATTCAGAATCCATACCTTGGCACTCGCAGTATGGATGGTTCCTGAGAATGTGGACATCTCAGTAACCTTGCACAAGgtgagagcactgagtgtggcatgggcaggcactgcagagagatgggcagg Alignment from Spaln_aa2Genome GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACC-GTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG tataagaattcaacaatggtggggaatagactggctccttctgtgtgcagGCCCACAGCTGGCAGCCTGGCATTCAGAATCCATACCTTGGCACTcGCAGTATGGATGGTTCCTGAGAATGTGGACATCTCAGTAACCTTGCACAAGgtgagagcactgagtgtggcatgggcaggcactgcagagagatgggcagg Alignment from Spaln_nt2Genome GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCAC-CGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG tataagaattcaacaatggtggggaatagactggctccttctgtgtgcagGCCCACAGCTGGCAGCCTGGCATTCAGAATCCATACCTTGGCACTCGCAGTATGGATGGTTCCTGAGAATGTGGACATCTCAGTAACCTTGCACAAGgtgagagcactgagtgtggcatgggcaggcactgcagagagatgggcagg Alignment from Pairagon GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCAC-CGTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG tataagaattcaacaatggtggggaatagactggctccttctgtgtgcagGCCCACAGCTGGCAGCCTGGCATTCAGAATCCATACCTTGGCACTCGCAGTATGGATGGTTCCTGAGAATGTGGACATCTCAGTAACCTTGCACAAGgtgagagcactgagtgtggcatgggcaggcactgcagagagatgggcagg Alignment from Exonerate_protein2genome tataagaattcaacaatggtggggaatagactggctccttctgtgtgcaggcccacagctggcagcctggcattcagaatccataccttggcactcgcagtatggatggttcctgagaatgtggacatctcagtaaccttgcacaaggtgagagcactgagtgtggcatgggcaggcactgcagagagatgggcagg Alignment from Exonerate_coding2genome tataagaattcaacaatggtggggaatagactggctccttctgtgtgcaggcccacagctggcagcctggcattcagaatccataccttggcactcgcagtatggatggttcctgagaatgtggacatctcagtaaccttgcacaaggtgagagcactgagtgtggcatgggcaggcactgcagagagatgggcagg Alignment from GeneWise GCCCACAGCTGGCAGCCTGGCATCCAGAACCCATACCGTGGCACC-GTGGTATGGATGGTTCCTGAGAACGTGGACATCTCGGTGACCTTGTACAGG tataagaattcaacaatggtggggaatagactggctccttctgtgtgcagGCCCACAGCTGGCAGCCTGGCATTCAGAATCCATACCTTGGCACTCGCAGTATGGATGGTTCCTGAGAATGTGGACATCTCAGTAACCTTGCACAAGgtgagagcactgagtgtggcatgggcaggcactgcagagagatgggcagg #### Eif1ad_ID949_2 --> 0 - 1 Original Alignment GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCC-TCCAAATACCGCAAGAACATCTGGATCAAGAGAg caggttttaaatgatgagctagctggttaatttttttaatgtgtttgcagGTCCTCAGGACTCCAGGGAACAATTTGCATGAGGTGGAAACAGCTCAGGGGCAGCGCTTCCTGGTCAGCATGCCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAggtaatctccattcgcttttctcaataccaaagactcttggccagcatgtt Alignment from CESAR GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCC-TCCAAATACCGCAAGAACATCTGGATCAAGAGAg caggttttaaatgatgagctagctggttaatttttttaatgtgtttgcagGTCCTCAGGACTCCAGGGAACAATTTGCATGAGGTGGAAACAGCTCAGGGGCAGCGCTTCCTGGTCAGCATGCCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAggtaatctccattcgcttttctcaataccaaagactcttggccagcatgtt Alignment from Spaln_aa2Genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCC-TCCAAATACCGCAAGAACATCTGGATCAAGAGAG caggttttaaatgatgagctagctggttaatttttttaatgtgtttgcagGTCCTCAGGACTCCAGGGAACAATTTGCATGAGGTGGAAACAGCTCAGGGGCAGCGCTTCCTGGTCAGCATGCCCcTCCAAATACCGCAAGAACATCTGGATCAAGAGAGgtaatctccattcgcttttctcaataccaaagactcttggccagcatgtt Alignment from Spaln_nt2Genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATG-CCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG caggttttaaatgatgagctagctggttaatttttttaatgtgtttgcagGTCCTCAGGACTCCAGGGAACAATTTGCATGAGGTGGAAACAGCTCAGGGGCAGCGCTTCCTGGTCAGCATGCCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAGgtaatctccattcgcttttctcaataccaaagactcttggccagcatgtt Alignment from Pairagon GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATG-CCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG caggttttaaatgatgagctagctggttaatttttttaatgtgtttgcagGTCCTCAGGACTCCAGGGAACAATTTGCATGAGGTGGAAACAGCTCAGGGGCAGCGCTTCCTGGTCAGCATGCCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAGgtaatctccattcgcttttctcaataccaaagactcttggccagcatgtt Alignment from Exonerate_protein2genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATG-CCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG caggttttaaatgatgagctagctggttaatttttttaatgtgtttgcagGTCCTCAGGACTCCAGGGAACAATTTGCATGAGGTGGAAACAGCTCAGGGGCAGCGCTTCCTGGTCAGCATGCCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAGgtaatctccattcgcttttctcaataccaaagactcttggccagcatgtt Alignment from Exonerate_coding2genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATG-CCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG caggttttaaatgatgagctagctggttaatttttttaatgtgtttgcagGTCCTCAGGACTCCAGGGAACAATTTGCATGAGGTGGAAACAGCTCAGGGGCAGCGCTTCCTGGTCAGCATGCCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAGgtaatctccattcgcttttctcaataccaaagactcttggccagcatgtt Alignment from GeneWise GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGCAGCGCTTCCTGGTGAGCATGCCC-TCCAAATACCGCAAGAACATCTGGATCAAGAGAG caggttttaaatgatgagctagctggttaatttttttaatgtgtttgcagGTCCTCAGGACTCCAGGGAACAATTTGCATGAGGTGGAAACAGCTCAGGGGCAGCGCTTCCTGGTCAGCATGCCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAGgtaatctccattcgcttttctcaataccaaagactcttggccagcatgtt #### Eif3a_ID13319_11 --> 0 - 0 Original Alignment GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCC-CCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG caacatacagttgaaataaatcccaattttatttatttatttataaatagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCCAGTTGGCCCACATCTGCAAGGTATGCCTTCAGAACAGATAAGGAACCAGCTCACCGCCATGTCCTCAGTGCTCGCCAAAGCACTAGGAATCATCAGACCTGCGCACATTTTGgtaacggtctagaggaggggtgatttgcacaagcgttaatatggtggggg Alignment from CESAR GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCC-CCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG caacatacagttgaaataaatcccaattttatttatttatttataaatagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCCAGTTGGCCCACATCTGCAAGGTATGCCTTCAGAACAGATAAGGAACCAGCTCACCGCCATGTCCTCAGTGCTCGCCAAAGCACTAGGAATCATCAGACCTGCGCACATTTTGgtaacggtctagaggaggggtgatttgcacaagcgttaatatggtggggg Alignment from Spaln_aa2Genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCA-GTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG caacatacagttgaaataaatcccaattttatttatttatttataaatagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCCaGTTGGCCCACATCTGCAAGGTATGCCTTCAGAACAGATAAGGAACCAGCTCACCGCCATGTCCTCAGTGCTCGCCAAAGCACTAGGAATCATCAGACCTGCGCACATTTTGgtaacggtctagaggaggggtgatttgcacaagcgttaatatggtggggg Alignment from Spaln_nt2Genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATG-CCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG caacatacagttgaaataaatcccaattttatttatttatttataaatagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCCAGTTGGCCCACATCTGCAAGGTATGCCTTCAGAACAGATAAGGAACCAGCTCACCGCCATGTCCTCAGTGCTCGCCAAAGCACTAGGAATCATCAGACCTGCGCACATTTTGgtaacggtctagaggaggggtgatttgcacaagcgttaatatggtggggg Alignment from Pairagon GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATG-CCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG caacatacagttgaaataaatcccaattttatttatttatttataaatagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCCAGTTGGCCCACATCTGCAAGGTATGCCTTCAGAACAGATAAGGAACCAGCTCACCGCCATGTCCTCAGTGCTCGCCAAAGCACTAGGAATCATCAGACCTGCGCACATTTTGgtaacggtctagaggaggggtgatttgcacaagcgttaatatggtggggg Alignment from Exonerate_protein2genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCC-CCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG caacatacagttgaaataaatcccaattttatttatttatttataaatagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCCAGTTGGCCCACATCTGCAAGGTATGCCTTCAGAACAGATAAGGAACCAGCTCACCGCCATGTCCTCAGTGCTCGCCAAAGCACTAGGAATCATCAGACCTGCGCACATTTTGgtaacggtctagaggaggggtgatttgcacaagcgttaatatggtggggg Alignment from Exonerate_coding2genome GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCC-CCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG caacatacagttgaaataaatcccaattttatttatttatttataaatagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCCAGTTGGCCCACATCTGCAAGGTATGCCTTCAGAACAGATAAGGAACCAGCTCACCGCCATGTCCTCAGTGCTCGCCAAAGCACTAGGAATCATCAGACCTGCGCACATTTTGgtaacggtctagaggaggggtgatttgcacaagcgttaatatggtggggg Alignment from GeneWise GTACGTATTGACCATACTTCCCGGACTCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGAT-GCCCCAGTTGGCCCTCATCTGCAGAGCATGCCTTCAGAGCAGATAAGAAACCAGCTCACGGCCATGTCCTCAGTGCTTGCCAAAGCACTTGAAGTCATCAGACCTGCTCACATTCTG caacatacagttgaaataaatcccaattttatttatttatttataaatagGTACGTATAGACCATACCTCCCGGACCCTGAGTTTTGGATCAGATTTGAATTATGCAACTCGAGAAGATGCCCCCAGTTGGCCCACATCTGCAAGGTATGCCTTCAGAACAGATAAGGAACCAGCTCACCGCCATGTCCTCAGTGCTCGCCAAAGCACTAGGAATCATCAGACCTGCGCACATTTTGgtaacggtctagaggaggggtgatttgcacaagcgttaatatggtggggg #### Eml3_ID2503_3 --> 1 - 2 Original Alignment cAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTT-CCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACac gCCCCGAAGAAATTCTTCCTCCTCC tacaattattctgatgtgctgggtattgtgtttggtgttttcctcatcagcAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGTCCTTCCTTGGTGACAAGAGGCACACAAACTAAAGAAGAGTTAGAGATTGTACCCTTCCTCTGGACCCCCTGGCCTAAGCAATGGCCCACCAGCTCTTCAAGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGTCGCAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAGCCTCTTGAGTGTTCAGACacgtatggtttctctgttttcctgtaggCCGCGAAGAAATTCTTCCTCCTCA Alignment from CESAR cAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTT-CCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACac gCCCCGAAGAAATTCTTCCTCCTCC tacaattattctgatgtgctgggtattgtgtttggtgttttcctcatcagcAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGTCCTTCCTTGGTGACAAGAGGCACACAAACTAAAGAAGAGTTAGAGATTGTACCCTTCCTCTGGACCCCCTGGCCTAAGCAATGGCCCACCAGCTCTTCAAGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGTCGCAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAGCCTCTTGAGTGTTCAGACacgtatttacttccttgcctgttttaggCCGCGAAGAAATTCTTCCTCCTCA Alignment from Spaln_aa2Genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTT-CCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCA GCGTTCTGACACGCCCCGAAGAAAT tacaattattctgatgtgctgggtattgtgtttggtgttttcctcatcagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGTCCTTCCTTGGTGACAAGAGGCACACAAACTAAAGAAGAGTTAGAGATTGTAcCCTTCCTCTGGACCCCCTGGCCTAAGCAATGGCCCACCAGCTCTTCAAGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGTCGCAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAGCCTCTTGAgtgttcagacacgtatggtttctctgttttcctgtagG------------CCGCGAAGAAAT Alignment from Spaln_nt2Genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCAT-CCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGC GTTCTGACACGCCCCGAAGAAATTC tacaattattctgatgtgctgggtattgtgtttggtgttttcctcatcagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGTCCTTCCTTGGTGACAAGAGGCACACAAACTAAAGAAGAGTTAGAGATTGTACCCTTCCTCTGGACCCCCTGGCCTAAGCAATGGCCCACCAGCTCTTCAAGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGTCGCAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAGCCTCTTGAGTgttcagacacgtatggtttctctgttttcctgtag----------GCCGCGAAGAAATTC Alignment from Pairagon CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGT-TCCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC-------------------------GCCCCGAAGAAATTCTTCCTCCTCC tacaattattctgatgtgctgggtattgtgtttggtgttttcctcatcagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGTCCTTCCTTGGTGACAAGAGGCACACAAACTAAAGAAGAGTTAGAGATTGTACCCTTCCTCTGGACCCCCTGGCCTAAGCAATGGCCCACCAGCTCTTCAAGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGTCGCAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAGCCTCTTGAGTGTTCAGACACGTATGGTTTCTCTGTTTTCCTGTAGGCCGCGAAGAAATTCTTCCTCCTCA Alignment from Exonerate_protein2genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTT-CCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC GCCCCGAAGAAATTCTTCC tacaattattctgatgtgctgggtattgtgtttggtgttttcctcatcagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGTCCTTCCTTGGTGACAAGAGGCACACAAACTAAAGAAGAGTTAGAGATTGTACCCTTCCTCTGGACCCCCTGGCCTAAGCAATGGCCCACCAGCTCTTCAAGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGTCGCAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAGCCTCTTGAGTGTTCAGACACgtatggtttctctgttttcctgtaggccgcgA---AGAAATTCTTCCTCC Alignment from Exonerate_coding2genome CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTT-CCATCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACAC GCCCCGAAGAAATTCTTCC tacaattattctgatgtgctgggtattgtgtttggtgttttcctcatcagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGTCCTTCCTTGGTGACAAGAGGCACACAAACTAAAGAAGAGTTAGAGATTGTACCCTTCCTCTGGACCCCCTGGCCTAAGCAATGGCCCACCAGCTCTTCAAGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGTCGCAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAGCCTCTTGAGTGTTCAGACACgtatggtttctctgttttcctgtaggccgcgA---AGAAATTCTTCCTCC Alignment from GeneWise CAGCATCACAGTCCCTCCAGGACTGCCACCTACATGCAGCCCTTCCTTGGTGACCAGAGGCACCCAAACGGAAGAAGAATTGGAGATTGTTCCA-TCCTCTGGACCCCCTGGCCTGAGCAATGGTCCTCCAGCTCTTCAGGGGGGCAGTGAAGAACCTAGTGGGACCCAGTCTGAAGGAGGGTGCAGCAGCAGCAGTGGGGCAGGCTCCCCTGGCCCCCCAGGAATCCTCAGGCCGGTGCAGCCTCTTCAGCGTTCTGACACG---------------------------CCCCGAAGAAATTCTTCCTCCT tacaattattctgatgtgctgggtattgtgtttggtgttttcctcatcagCAGCATCACAGTCCCTCCAGGGCTGCCACCAACCTGCAGTCCTTCCTTGGTGACAAGAGGCACACAAACTAAAGAAGAGTTAGAGATTGTACCCTTCCTCTGGACCCCCTGGCCTAAGCAATGGCCCACCAGCTCTTCAAGGGGGCAGTGAAGAACCTAGTGGTATCCAGTTTCAAGGTGGGTGTCGCAGCAGCAGTGGGGCAGGATCACCTGGTCCTCCAGGAATCCTCAGGCCAGTGCAGCCTCTTGAGTGTTCAGACACGTATGGTTTCTCTG--TTTTCCTGTAGGCCGCGAAGAAATTCTTCCTCCT #### Eml3_ID2507_6 --> 2 - 2 Original Alignment aaGGCATTTCAGTGAAGATG-TTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGgt ttgctgtggggcctccaagaaggaggcttaatacatattttccttggcagaaGGGATTTCAGTGAAGATGCTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGGAGTCTTGAGGAGCTGCCTAGTGGCCCACCACCAGAGACTCTGACCCTTGATTGGgtgtcggtggtttaaaactgtcacacacaatgggtaccctggcatctttgca Alignment from CESAR aaGGCATTTCAGTGAAGATG-TTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGgt ttgctgtggggcctccaagaaggaggcttaatacatattttccttggcagaaGGGATTTCAGTGAAGATGCTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGGAGTCTTGAGGAGCTGCCTAGTGGCCCACCACCAGAGACTCTGACCCTTGATTGGgtgtcggtggtttaaaactgtcacacacaatgggtaccctggcatctttgca Alignment from Spaln_aa2Genome AAGGCATTTCAGTGAAGATG-TTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT ttgctgtggggcctccaagaaggaggcttaatacatattttccttggcagAAGGGATTTCAGTGAAGATGcTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGGAGTCTTGAGGAGCTGCCTAGTGGCCCACCACCAGAGACTCTGACCCTTGATTGGGTgtcggtggtttaaaactgtcacacacaatgggtaccctggcatctttgca Alignment from Spaln_nt2Genome AAGGCATTTCAGTGAAGATG-TTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT ttgctgtggggcctccaagaaggaggcttaatacatattttccttggcagAAGGGATTTCAGTGAAGATGCTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGGAGTCTTGAGGAGCTGCCTAGTGGCCCACCACCAGAGACTCTGACCCTTGATTGGGTgtcggtggtttaaaactgtcacacacaatgggtaccctggcatctttgca Alignment from Pairagon AAGGCATTTCAGTGAAGATG-TTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT ttgctgtggggcctccaagaaggaggcttaatacatattttccttggcagAAGGGATTTCAGTGAAGATGCTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGGAGTCTTGAGGAGCTGCCTAGTGGCCCACCACCAGAGACTCTGACCCTTGATTGGGTgtcggtggtttaaaactgtcacacacaatgggtaccctggcatctttgca Alignment from Exonerate_protein2genome AAGGCATTTCAGTGAAGATG-TTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT ttgctgtggggcctccaagaaggaggcttaatacatattttccttggcagAAGGGATTTCAGTGAAGATGCTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGGAGTCTTGAGGAGCTGCCTAGTGGCCCACCACCAGAGACTCTGACCCTTGATTGGGTgtcggtggtttaaaactgtcacacacaatgggtaccctggcatctttgca Alignment from Exonerate_coding2genome AAGGCATTTCAGTGAAGATG-TTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT ttgctgtggggcctccaagaaggaggcttaatacatattttccttggcagAAGGGATTTCAGTGAAGATGCTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGGAGTCTTGAGGAGCTGCCTAGTGGCCCACCACCAGAGACTCTGACCCTTGATTGGGTgtcggtggtttaaaactgtcacacacaatgggtaccctggcatctttgca Alignment from GeneWise AAGGCATTTCAGTGAAG-ATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT ttgctgtggggcctccaagaaggaggcttaatacatattttccttggcagAAGGGATTTCAGTGAAGATGCTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGGAGTCTTGAGGAGCTGCCTAGTGGCCCACCACCAGAGACTCTGACCCTTGATTGGGTgtcggtggtttaaaactgtcacacacaatgggtaccctggcatctttgca #### Eml3_ID2508_7 --> 1 - 2 Original Alignment tTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAG-AGACATTACCGGGGTCACACAGACTGCGTTCGAtg tcccttcctccaattcctttcctcgaccagcagaaagttttattttgcagtTATGGGTACAGAGGTCATGATTCTCGCTCGAATCTATTTGTGCTACGCTCTGGGGAGGTGGTCTACCTTATTGCCTGTGTAGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGGCCAGGAGGTGGTGGTCAGCAGACACTATCGGGGTCACACAGACTGTGTTCGAtggtacatatcgtggtggggctgctgtatttagcacgaagggggtaggtctt Alignment from CESAR tTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAG-AGACATTACCGGGGTCACACAGACTGCGTTCGAtg tcccttcctccaattcctttcctcgaccagcagaaagttttattttgcagtTATGGGTACAGAGGTCATGATTCTCGCTCGAATCTATTTGTGCTACGCTCTGGGGAGGTGGTCTACCTTATTGCCTGTGTAGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGGCCAGGAGGTGGTGGTCAGCAGACACTATCGGGGTCACACAGACTGTGTTCGAtggtacatatcgtggtggggctgctgtatttagcacgaagggggtaggtctt Alignment from Spaln_aa2Genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAG-AGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctccaattcctttcctcgaccagcagaaagttttattttgcagTTATGGGTACAGAGGTCATGATTCTCGCTCGAATCTATTTGTGCTACGCTCTGGGGAGGTGGTCTACCTTATTGCCTGTGTAGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGGCCAGGAGGTGGTGGTCAGcAGACACTATCGGGGTCACACAGACTGTGTTCGATGgtacatatcgtggtggggctgctgtatttagcacgaagggggtaggtctt Alignment from Spaln_nt2Genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAG-AGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctccaattcctttcctcgaccagcagaaagttttattttgcagTTATGGGTACAGAGGTCATGATTCTCGCTCGAATCTATTTGTGCTACGCTCTGGGGAGGTGGTCTACCTTATTGCCTGTGTAGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGGCCAGGAGGTGGTGGTCAGCAGACACTATCGGGGTCACACAGACTGTGTTCGATGgtacatatcgtggtggggctgctgtatttagcacgaagggggtaggtctt Alignment from Pairagon TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAG-AGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctccaattcctttcctcgaccagcagaaagttttattttgcagTTATGGGTACAGAGGTCATGATTCTCGCTCGAATCTATTTGTGCTACGCTCTGGGGAGGTGGTCTACCTTATTGCCTGTGTAGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGGCCAGGAGGTGGTGGTCAGCAGACACTATCGGGGTCACACAGACTGTGTTCGATGgtacatatcgtggtggggctgctgtatttagcacgaagggggtaggtctt Alignment from Exonerate_protein2genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAG-AGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctccaattcctttcctcgaccagcagaaagttttattttgcagTTATGGGTACAGAGGTCATGATTCTCGCTCGAATCTATTTGTGCTACGCTCTGGGGAGGTGGTCTACCTTATTGCCTGTGTAGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGGCCAGGAGGTGGTGGTCAGCAGACACTATCGGGGTCACACAGACTGTGTTCGATGgtacatatcgtggtggggctgctgtatttagcacgaagggggtaggtctt Alignment from Exonerate_coding2genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAG-AGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctccaattcctttcctcgaccagcagaaagttttattttgcagTTATGGGTACAGAGGTCATGATTCTCGCTCGAATCTATTTGTGCTACGCTCTGGGGAGGTGGTCTACCTTATTGCCTGTGTAGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGGCCAGGAGGTGGTGGTCAGCAGACACTATCGGGGTCACACAGACTGTGTTCGATGgtacatatcgtggtggggctgctgtatttagcacgaagggggtaggtctt Alignment from GeneWise TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGC-CAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctccaattcctttcctcgaccagcagaaagttttattttgcagTTATGGGTACAGAGGTCATGATTCTCGCTCGAATCTATTTGTGCTACGCTCTGGGGAGGTGGTCTACCTTATTGCCTGTGTAGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGGCCAGGAGGTGGTGGTCAGCAGACACTATCGGGGTCACACAGACTGTGTTCGATGgtacatatcgtggtggggctgctgtatttagcacgaagggggtaggtctt #### Eml3_ID2515_14 --> 0 - 0 Original Alignment ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTC-TCCCCTGTTATCCAG GGCCACACTGATGA gggatggggagacatgtggttagtatattcattaatcttgtattttacagATTCCAGAACACTTTGGTGCAGTGAGAGCCATTGCTGAAGGACTTGGCTCTGAACTACTGGTGGGAACCACAAAGAATGCATTACTGAGAGGAGATCTTGCCCAAGGTTTCCTCCCCTGTTATCCAGgtgcgtattgtagcctgtccccaactgtttgttcagGGACACACTGATGA Alignment from CESAR ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTC-TCCCCTGTTATCCAG GGCCACACTGATGA gggatggggagacatgtggttagtatattcattaatcttgtattttacagATTCCAGAACACTTTGGTGCAGTGAGAGCCATTGCTGAAGGACTTGGCTCTGAACTACTGGTGGGAACCACAAAGAATGCATTACTGAGAGGAGATCTTGCCCAAGGTTTCCTCCCCTGTTATCCAGgtgcgtattgtagccctctcccttcttgcttcttagGGACACACTGATGA Alignment from Spaln_aa2Genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTC-TCCCCTGTTATCCAG GGCCACACTGATGA gggatggggagacatgtggttagtatattcattaatcttgtattttacagATTCCAGAACACTTTGGTGCAGTGAGAGCCATTGCTGAAGGACTTGGCTCTGAACTACTGGTGGGAACCACAAAGAATGCATTACTGAGAGGAGATCTTGCCCAAGGTTTCcTCCCCTGTTATCCAGgtgcgtattgtagcctgtccccaactgtttgttcagGGACACACTGATGA Alignment from Spaln_nt2Genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTT-CTCCCCTGTTATCCAG GGCCACACTGATGA gggatggggagacatgtggttagtatattcattaatcttgtattttacagATTCCAGAACACTTTGGTGCAGTGAGAGCCATTGCTGAAGGACTTGGCTCTGAACTACTGGTGGGAACCACAAAGAATGCATTACTGAGAGGAGATCTTGCCCAAGGTTTCCTCCCCTGTTATCCAGgtgcgtattgtagcctgtccccaactgtttgttcagGGACACACTGATGA Alignment from Pairagon ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTT-CTCCCCTGTTATCCAG GGCCACACTGATGA gggatggggagacatgtggttagtatattcattaatcttgtattttacagATTCCAGAACACTTTGGTGCAGTGAGAGCCATTGCTGAAGGACTTGGCTCTGAACTACTGGTGGGAACCACAAAGAATGCATTACTGAGAGGAGATCTTGCCCAAGGTTTCCTCCCCTGTTATCCAGgtgcgtattgtagcctgtccccaactgtttgttcagGGACACACTGATGA Alignment from Exonerate_protein2genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTC-TCCCCTGTTATCCAG GGCCACACTGATGA gggatggggagacatgtggttagtatattcattaatcttgtattttacagATTCCAGAACACTTTGGTGCAGTGAGAGCCATTGCTGAAGGACTTGGCTCTGAACTACTGGTGGGAACCACAAAGAATGCATTACTGAGAGGAGATCTTGCCCAAGGTTTCCTCCCCTGTTATCCAGgtgcgtattgtagcctgtccccaactgtttgttcagGGACACACTGATGA Alignment from Exonerate_coding2genome ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTC-TCCCCTGTTATCCAG GGCCACACTGATGA gggatggggagacatgtggttagtatattcattaatcttgtattttacagATTCCAGAACACTTTGGTGCAGTGAGAGCCATTGCTGAAGGACTTGGCTCTGAACTACTGGTGGGAACCACAAAGAATGCATTACTGAGAGGAGATCTTGCCCAAGGTTTCCTCCCCTGTTATCCAGgtgcgtattgtagcctgtccccaactgtttgttcagGGACACACTGATGA Alignment from GeneWise ATTCCAGAACACTTTGGAGCTGTGAGGGCCATTGCTGAAGGGCTTGGCTCTGAGCTGCTGGTGGGAACCACAAAGAATGCATTACTGAGGGGAGATCTGGCTCAAGGCTTC-TCCCCTGTTATC------------------------------------CAGGGCCACACTGATGA gggatggggagacatgtggttagtatattcattaatcttgtattttacagATTCCAGAACACTTTGGTGCAGTGAGAGCCATTGCTGAAGGACTTGGCTCTGAACTACTGGTGGGAACCACAAAGAATGCATTACTGAGAGGAGATCTTGCCCAAGGTTTCCTCCCCTGTTATCCAGGTGCGTATTGTAGCCTGTCCCCAACTGTTTGTTCAGGGACACACTGATGA #### Eml3_ID2518_17 --> 1 - 1 Original Alignment gTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGAC-GGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAg aggtgtaaggtaaaatcttgtctccatgtccgtttctttgttgtccacaggTGGTTGGTCTTGGACACAGAGACCAGAGAGATTGTATCTGATGTCACGGATCGGCAATGAACAGCTCTCGGTTGTCCGGTACAGCCCAggtaagtgtgcctacccccggcctgggtcctgcctggctctgcttcatcac Alignment from CESAR gTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGAC-GGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAg aggtgtaaggtaaaatcttgtctccatgtccgtttctttgttgtccacaggTGGTTGGTCTTGGACACAGAGACCAGAGAGATTGTATCTGATGTCACGGATCGGCAATGAACAGCTCTCGGTTGTCCGGTACAGCCCAggtaagtgtgcctacccccggcctgggtcctgcctggctctgcttcatcac Alignment from Spaln_aa2Genome GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGAC-GGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aggtgtaaggtaaaatcttgtctccatgtccgtttctttgttgtccacagGTGGTTGGTCTTGGACACAGAGACCAGAGAGATTGTATCTGATGTCACGGATcGGCAATGAACAGCTCTCGGTTGTCCGGTACAGCCCAGgtaagtgtgcctacccccggcctgggtcctgcctggctctgcttcatcac Alignment from Spaln_nt2Genome GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGA-CGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aggtgtaaggtaaaatcttgtctccatgtccgtttctttgttgtccacagGTGGTTGGTCTTGGACACAGAGACCAGAGAGATTGTATCTGATGTCACGGATCGGCAATGAACAGCTCTCGGTTGTCCGGTACAGCCCAGgtaagtgtgcctacccccggcctgggtcctgcctggctctgcttcatcac Alignment from Pairagon GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGA-CGGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aggtgtaaggtaaaatcttgtctccatgtccgtttctttgttgtccacagGTGGTTGGTCTTGGACACAGAGACCAGAGAGATTGTATCTGATGTCACGGATCGGCAATGAACAGCTCTCGGTTGTCCGGTACAGCCCAGgtaagtgtgcctacccccggcctgggtcctgcctggctctgcttcatcac Alignment from Exonerate_protein2genome GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGAC-GGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aggtgtaaggtaaaatcttgtctccatgtccgtttctttgttgtccacagGTGGTTGGTCTTGGACACAGAGACCAGAGAGATTGTATCTGATGTCACGGATCGGCAATGAACAGCTCTCGGTTGTCCGGTACAGCCCAGgtaagtgtgcctacccccggcctgggtcctgcctggctctgcttcatcac Alignment from Exonerate_coding2genome GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGAC-GGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aggtgtaaggtaaaatcttgtctccatgtccgtttctttgttgtccacagGTGGTTGGTCTTGGACACAGAGACCAGAGAGATTGTATCTGATGTCACGGATCGGCAATGAACAGCTCTCGGTTGTCCGGTACAGCCCAGgtaagtgtgcctacccccggcctgggtcctgcctggctctgcttcatcac Alignment from GeneWise GTGGTTGGTTTTGGACACAGAGACCAGAGAGATTGTATCCGATGTCACTGAC-GGCAATGAACAGCTCTCAGTTGTCCGGTACAGCCCAG aggtgtaaggtaaaatcttgtctccatgtccgtttctttgttgtccacagGTGGTTGGTCTTGGACACAGAGACCAGAGAGATTGTATCTGATGTCACGGATCGGCAATGAACAGCTCTCGGTTGTCCGGTACAGCCCAGgtaagtgtgcctacccccggcctgggtcctgcctggctctgcttcatcac #### Eml3_ID2519_18 --> 2 - 0 Original Alignment atGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTAT-AGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatgttgcccacccatgtcataactcttatattctatattccacagatGGGTTGTACCTTGCGATAGGTTCACATGACAACATGATCTACATCTACCAGTATTTCCAGTTGTGGTACTAAATCCAGCCGCTTTGGCAGGTGTATGgtactcattctggctagaggatactatttgtcttactttggtcatggtaa Alignment from CESAR atGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTAT-AGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatgttgcccacccatgtcataactcttatattctatattccacagatGGGTTGTACCTTGCGATAGGTTCACATGACAACATGATCTACATCTACCAGTATTTCCAGTTGTGGTACTAAATCCAGCCGCTTTGGCAGGTGTATGgtactcattctggctagaggatactatttgtcttactttggtcatggtaa Alignment from Spaln_aa2Genome ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTAT-AGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatgttgcccacccatgtcataactcttatattctatattccacagATGGGTTGTACCTTGCGATAGGTTCACATGACAACATGATCTACATCTACcAGTATTTCCAGTTGTGGTACTAAATCCAGCCGCTTTGGCAGGTGTATGgtactcattctggctagaggatactatttgtcttactttggtcatggtaa Alignment from Spaln_nt2Genome ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTAT-AGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatgttgcccacccatgtcataactcttatattctatattccacagATGGGTTGTACCTTGCGATAGGTTCACATGACAACATGATCTACATCTACCAGTATTTCCAGTTGTGGTACTAAATCCAGCCGCTTTGGCAGGTGTATGgtactcattctggctagaggatactatttgtcttactttggtcatggtaa Alignment from Pairagon ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTA-TAGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatgttgcccacccatgtcataactcttatattctatattccacagATGGGTTGTACCTTGCGATAGGTTCACATGACAACATGATCTACATCTACCAGTATTTCCAGTTGTGGTACTAAATCCAGCCGCTTTGGCAGGTGTATGgtactcattctggctagaggatactatttgtcttactttggtcatggtaa Alignment from Exonerate_protein2genome ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTAT-AGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatgttgcccacccatgtcataactcttatattctatattccacagATGGGTTGTACCTTGCGATAGGTTCACATGACAACATGATCTACATCTACCAGTATTTCCAGTTGTGGTACTAAATCCAGCCGCTTTGGCAGGTGTATGgtactcattctggctagaggatactatttgtcttactttggtcatggtaa Alignment from Exonerate_coding2genome ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTAT-AGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatgttgcccacccatgtcataactcttatattctatattccacagATGGGTTGTACCTTGCGATAGGTTCACATGACAACATGATCTACATCTACCAGTATTTCCAGTTGTGGTACTAAATCCAGCCGCTTTGGCAGGTGTATGgtactcattctggctagaggatactatttgtcttactttggtcatggtaa Alignment from GeneWise ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTAT-AGTGTTTCCAGTTGTGGCACTAAGTCCAGCCGCTTTGGCAGATGTATG caaatatgttgcccacccatgtcataactcttatattctatattccacagATGGGTTGTACCTTGCGATAGGTTCACATGACAACATGATCTACATCTACCAGTATTTCCAGTTGTGGTACTAAATCCAGCCGCTTTGGCAGGTGTATGgtactcattctggctagaggatactatttgtcttactttggtcatggtaa #### Exosc1_ID8337_2 --> 2 - 0 Original Alignment gcGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTG-GCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ggtggtaagccactcctggtcacttggctttcctttttaactattttcaggtGAACGTCTGTGCAACTTGGAAGAAGGCAGTCCTGGCAGTGGCACCTACACCTGGCATGGCTACATCTTTTCATCATTGCGCTGGCTGTCTTATGAAGACCAGTGAGAACGGTGCAgtgagtaaagtggctccccaggctgtgctccctctcccattgagtcctca Alignment from CESAR gcGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTG-GCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ggtggtaagccactcctggtcacttggctttcctttttaactattttcaggtGAACGTCTGTGCAACTTGGAAGAAGGCAGTCCTGGCAGTGGCACCTACACCTGGCATGGCTACATCTTTTCATCATTGCGCTGGCTGTCTTATGAAGACCAGTGAGAACGGTGCAgtgagtaaagtggctccccaggctgtgctccctctcccattgagtcctca Alignment from Spaln_aa2Genome GCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTG-GCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ggtggtaagccactcctggtcacttggctttcctttttaactattttcagGTGAACGTCTGTGCAACTTGGAAGAAGGCAGTCCTGGCAGTGGCACCTACACCTGGCATGGCTACATCTTTTCATCATTGcGCTGGCTGTCTTATGAAGACCAGTGAGAACGGTGCAgtgagtaaagtggctccccaggctgtgctccctctcccattgagtcctca Alignment from Spaln_nt2Genome GCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTG-GCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ggtggtaagccactcctggtcacttggctttcctttttaactattttcagGTGAACGTCTGTGCAACTTGGAAGAAGGCAGTCCTGGCAGTGGCACCTACACCTGGCATGGCTACATCTTTTCATCATTGCGCTGGCTGTCTTATGAAGACCAGTGAGAACGGTGCAgtgagtaaagtggctccccaggctgtgctccctctcccattgagtcctca Alignment from Pairagon GCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTG-GCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ggtggtaagccactcctggtcacttggctttcctttttaactattttcagGTGAACGTCTGTGCAACTTGGAAGAAGGCAGTCCTGGCAGTGGCACCTACACCTGGCATGGCTACATCTTTTCATCATTGCGCTGGCTGTCTTATGAAGACCAGTGAGAACGGTGCAgtgagtaaagtggctccccaggctgtgctccctctcccattgagtcctca Alignment from Exonerate_protein2genome GCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTG-GCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ggtggtaagccactcctggtcacttggctttcctttttaactattttcagGTGAACGTCTGTGCAACTTGGAAGAAGGCAGTCCTGGCAGTGGCACCTACACCTGGCATGGCTACATCTTTTCATCATTGCGCTGGCTGTCTTATGAAGACCAGTGAGAACGGTGCAgtgagtaaagtggctccccaggctgtgctccctctcccattgagtcctca Alignment from Exonerate_coding2genome GGCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTG-GCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ggtggtaagccactcctggtcacttggctttcctttttaactattttcaGGTGAACGTCTGTGCAACTTGGAAGAAGGCAGTCCTGGCAGTGGCACCTACACCTGGCATGGCTACATCTTTTCATCATTGCGCTGGCTGTCTTATGAAGACCAGTGAGAACGGTGCAgtgagtaaagtggctccccaggctgtgctccctctcccattgagtcctca Alignment from GeneWise GGCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTG-GCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCG ggtggtaagccactcctggtcacttggctttcctttttaactattttcaGGTGAACGTCTGTGCAACTTGGAAGAAGGCAGTCCTGGCAGTGGCACCTACACCTGGCATGGCTACATCTTTTCATCATTGCGCTGGCTGTCTTATGAAGACCAGTGAGAACGGTGCAgtgagtaaagtggctccccaggctgtgctccctctcccattgagtcctca #### Fads1_ID2689_3 --> 0 - 0 Original Alignment AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTG-CTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG gctctcttgacattggttaagtgggatactttatggctttttccttttagAAAGTGCTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGCCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTACCTTCGCATTCCACTGCTTGATGTAGCTGCCTGGCTCACACTATGGATCTTTGGAACTTCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtgaggtttacctgttaattcaaacatcagatgccaagagaatggtctgt Alignment from CESAR AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTG-CTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG gctctcttgacattggttaagtgggatactttatggctttttccttttagAAAGTGCTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGCCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTACCTTCGCATTCCACTGCTTGATGTAGCTGCCTGGCTCACACTATGGATCTTTGGAACTTCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtgaggtttacctgttaattcaaacatcagatgccaagagaatggtctgt Alignment from Spaln_aa2Genome AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTG-CTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG gctctcttgacattggttaagtgggatactttatggctttttccttttagAAAGTGCTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGCCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTAcCTTCGCATTCCACTGCTTGATGTAGCTGCCTGGCTCACACTATGGATCTTTGGAACTTCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtgaggtttacctgttaattcaaacatcagatgccaagagaatggtctgt Alignment from Spaln_nt2Genome AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGC-TTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG gctctcttgacattggttaagtgggatactttatggctttttccttttagAAAGTGCTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGCCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTACCTTCGCATTCCACTGCTTGATGTAGCTGCCTGGCTCACACTATGGATCTTTGGAACTTCCTTGGTGCC---CATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtgaggtttacctgttaattcaaacatcagatgccaagagaatggtctgt Alignment from Pairagon AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTG-CTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG gctctcttgacattggttaagtgggatactttatggctttttccttttagAAAGTGCTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGCCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTACCTTCGCATTCCACTGCTTGATGTAGCTGCCTGGCTCACACTATGGATCTTTGGAACTTCCTTGGTGCC---CATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtgaggtttacctgttaattcaaacatcagatgccaagagaatggtctgt Alignment from Exonerate_protein2genome AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTG-CTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG gctctcttgacattggttaagtgggatactttatggctttttccttttagAAAGTGCTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGCCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTACCTTCGCATTCCACTGCTTGATGTAGCTGCCTGGCTCACACTATGGATCTTTGGAACTTCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtgaggtttacctgttaattcaaacatcagatgccaagagaatggtctgt Alignment from Exonerate_coding2genome AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTG-CTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG gctctcttgacattggttaagtgggatactttatggctttttccttttagAAAGTGCTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGCCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTACCTTCGCATTCCACTGCTTGATGTAGCTGCCTGGCTCACACTATGGATCTTTGGAACTTCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtgaggtttacctgttaattcaaacatcagatgccaagagaatggtctgt Alignment from GeneWise AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTG-CTTCACATCCTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG gctctcttgacattggttaagtgggatactttatggctttttccttttagAAAGTGCTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGCCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTACCTTCGCATTCCACTGCTTGATGTAGCTGCCTGGCTCACACTATGGATCTTTGGAACTTCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtgaggtttacctgttaattcaaacatcagatgccaagagaatggtctgt #### Fads1_ID2690_4 --> 0 - 0 Original Alignment GCTCAGGCAGGTTGG-CTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG gtgctggacagctatagaggtactgctgagacctcctctttcctttatagGGTCAGGCAGGTTGGCCTACAGCATGACTTTGGGCACTTGTCAGTCTTTGGCACCTCAATGTGGAATTACCTGCTGCACCATTTTGTAATTGGGCACCTGAAGgtaagagatattatcttgttcacccaagcttcagtcgttcgtagtttgtc Alignment from CESAR GCTCAGGCAGGTTGG-CTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG gtgctggacagctatagaggtactgctgagacctcctctttcctttatagGGTCAGGCAGGTTGGCCTACAGCATGACTTTGGGCACTTGTCAGTCTTTGGCACCTCAATGTGGAATTACCTGCTGCACCATTTTGTAATTGGGCACCTGAAGgtaagagatattatcttgttcacccaagcttcagtcgttcgtagtttgtc Alignment from Spaln_aa2Genome GCTCAGGCAGGTTGG-CTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG gtgctggacagctatagaggtactgctgagacctcctctttcctttatagGGTCAGGCAGGTTGGcCTACAGCATGACTTTGGGCACTTGTCAGTCTTTGGCACCTCAATGTGGAATTACCTGCTGCACCATTTTGTAATTGGGCACCTGAAGgtaagagatattatcttgttcacccaagcttcagtcgttcgtagtttgtc Alignment from Spaln_nt2Genome GCTCAGGCAGGTTGGC-TACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG gtgctggacagctatagaggtactgctgagacctcctctttcctttatagGGTCAGGCAGGTTGGCCTACAGCATGACTTTGGGCACTTGTCAGTCTTTGGCACCTCAATGTGGAATTACCTGCTGCACCATTTTGTAATTGGGCACCTGAAGgtaagagatattatcttgttcacccaagcttcagtcgttcgtagtttgtc Alignment from Pairagon GCTCAGGCAGGTTGG-CTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG gtgctggacagctatagaggtactgctgagacctcctctttcctttatagGGTCAGGCAGGTTGGCCTACAGCATGACTTTGGGCACTTGTCAGTCTTTGGCACCTCAATGTGGAATTACCTGCTGCACCATTTTGTAATTGGGCACCTGAAGgtaagagatattatcttgttcacccaagcttcagtcgttcgtagtttgtc Alignment from Exonerate_protein2genome GCTCAGGCAGGTTGG-CTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG gtgctggacagctatagaggtactgctgagacctcctctttcctttatagGGTCAGGCAGGTTGGCCTACAGCATGACTTTGGGCACTTGTCAGTCTTTGGCACCTCAATGTGGAATTACCTGCTGCACCATTTTGTAATTGGGCACCTGAAGgtaagagatattatcttgttcacccaagcttcagtcgttcgtagtttgtc Alignment from Exonerate_coding2genome GCTCAGGCAGGTTGG-CTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG gtgctggacagctatagaggtactgctgagacctcctctttcctttatagGGTCAGGCAGGTTGGCCTACAGCATGACTTTGGGCACTTGTCAGTCTTTGGCACCTCAATGTGGAATTACCTGCTGCACCATTTTGTAATTGGGCACCTGAAGgtaagagatattatcttgttcacccaagcttcagtcgttcgtagtttgtc Alignment from GeneWise GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG gtgctggacagctatagaggtactgctgagacctcctctttcctttatagggtcaggcagGTT---------GGCCTACAGCATGACTTTGGGCACTTGTCAGTCTTTGGCACCTCAATGTGGAATTACCTGCTGCACCATTTTGTAATTGGGCACCTGAAGgtaagagatattatcttgttcacccaagcttcagtcgttcgtagtttgtc #### Fads1_ID2695_9 --> 1 - 0 Original Alignment gTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATC-CCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG cgctcttatgatcagttctacctcttatctctcggctctccttcttgtaggTTTCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCTCCATGCACATTGACCCAGACCGAAATGTGGACTGGGTCTCCACCCAGgtgagttacagtctttaaagcccgcccttggcactgaagagtttagatga Alignment from CESAR gTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATC-CCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG cgctcttatgatcagttctacctcttatctctcggctctccttcttgtaggTTTCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCTCCATGCACATTGACCCAGACCGAAATGTGGACTGGGTCTCCACCCAGgtgagttacagtctttaaagcccgcccttggcactgaagagtttagatga Alignment from Spaln_aa2Genome GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATC-CCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG cgctcttatgatcagttctacctcttatctctcggctctccttcttgtagGTTTCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCcTCCATGCACATTGACCCAGACCGAAATGTGGACTGGGTCTCCACCCAGgtgagttacagtctttaaagcccgcccttggcactgaagagtttagatga Alignment from Spaln_nt2Genome GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCC-CCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG cgctcttatgatcagttctacctcttatctctcggctctccttcttgtagGTTTCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCTCCATGCACATTGACCCAGACCGAAATGTGGACTGGGTCTCCACCCAGgtgagttacagtctttaaagcccgcccttggcactgaagagtttagatga Alignment from Pairagon GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCC-CCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG cgctcttatgatcagttctacctcttatctctcggctctccttcttgtagGTTTCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCTCCATGCACATTGACCCAGACCGAAATGTGGACTGGGTCTCCACCCAGgtgagttacagtctttaaagcccgcccttggcactgaagagtttagatga Alignment from Exonerate_protein2genome GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATC-CCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG cgctcttatgatcagttctacctcttatctctcggctctccttcttgtagGTTTCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCTCCATGCACATTGACCCAGACCGAAATGTGGACTGGGTCTCCACCCAGgtgagttacagtctttaaagcccgcccttggcactgaagagtttagatga Alignment from Exonerate_coding2genome GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATC-CCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG cgctcttatgatcagttctacctcttatctctcggctctccttcttgtagGTTTCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCTCCATGCACATTGACCCAGACCGAAATGTGGACTGGGTCTCCACCCAGgtgagttacagtctttaaagcccgcccttggcactgaagagtttagatga Alignment from GeneWise GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATC-CCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG cgctcttatgatcagttctacctcttatctctcggctctccttcttgtagGTTTCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCTCCATGCACATTGACCCAGACCGAAATGTGGACTGGGTCTCCACCCAGgtgagttacagtctttaaagcccgcccttggcactgaagagtttagatga #### Fads1_ID2697_11 --> 1 - 2 Original Alignment cCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCC-AAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTta caataagggattgacagggaagcaaaattactgacccatccccattgcagtGTCTTCCCCACAATGCCTCGCCACAACTACCACAAGGTGACACCAGTAGTACAATCCCTATGTGCCCAAGTATGGCATCAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTtagtaggtatgaacgctgagctgacagtagtgaagtgagcatgtgacaagca Alignment from CESAR cCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCC-AAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTta caataagggattgacagggaagcaaaattactgacccatccccattgcagtGTCTTCCCCACAATGCCTCGCCACAACTACCACAAGGTGACACCAGTAGTACAATCCCTATGTGCCCAAGTATGGCATCAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTtagtaggtatgaacgctgagctgacagtagtgaagtgagcatgtgacaagca Alignment from Spaln_aa2Genome CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCC-AAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA caataagggattgacagggaagcaaaattactgacccatccccattgcagTGTCTTCCCCACAATGCCTCGCCACAACTACCACAAGGTGACACCAGTAGTACAATCCCTATGTGCCcAAGTATGGCATCAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTTAgtaggtatgaacgctgagctgacagtagtgaagtgagcatgtgacaagca Alignment from Spaln_nt2Genome CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCC-AAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA caataagggattgacagggaagcaaaattactgacccatccccattgcagTGTCTTCCCCACAATGCCTCGCCACAACTACCACAAGGTGACACCAGTAGTACAATCCCTATGTGCCCAAGTATGGCATCAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTTAgtaggtatgaacgctgagctgacagtagtgaagtgagcatgtgacaagca Alignment from Pairagon CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCG-CCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA caataagggattgacagggaagcaaaattactgacccatccccattgcagTGTCTTCCCCACAATGCCTCGCCACAACTACCACAAGGTGACACCAGTAGTACAATCCCTATGTGCCCAAGTATGGCATCAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTTAgtaggtatgaacgctgagctgacagtagtgaagtgagcatgtgacaagca Alignment from Exonerate_protein2genome CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCC-AAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTTTA caataagggattgacagggaagcaaaattactgacccatccccattgcagTGTCTTCCCCACAATGCCTCGCCACAACTACCACAAGGTGACACCAGTAGTACAATCCCTATGTGCCCAAGTATGGCATCAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTTAgtaggtatgaacgctgagctgacagtagtgaagtgagcatgtgacaagca Alignment from Exonerate_coding2genome CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGCGCC-AAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTT caataagggattgacagggaagcaaaattactgacccatccccattgcagTGTCTTCCCCACAATGCCTCGCCACAACTACCACAAGGTGACACCAGTAGTACAATCCCTATGTGCCCAAGTATGGCATCAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTtagtaggtatgaacgctgagctgacagtagtgaagtgagcatgtgacaagca Alignment from GeneWise CCTCTTCCCCACCATGCCGCGGCACAACTACCACAAGGTGGCACCCCTAGTACAATCCCTGTGC-GCCAAGTACGGCATCAAGTATGAGTCCAAGCCCCTGCTCACAGCCTTCGCGGACATTGTT caataagggattgacagggaagcaaaattactgacccatccccattgcagTGTCTTCCCCACAATGCCTCGCCACAACTACCACAAGGTGACACCAGTAGTACAATCCCTATGTGCCCAAGTATGGCATCAAGTATGAGTCTAAACCCCTGCTTGCAGCTTTTGCAGACATTGTTtagtaggtatgaacgctgagctgacagtagtgaagtgagcatgtgacaagca #### Fads3_ID2664_7 --> 2 - 0 Original Alignment ttGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAAAATCTGGCG-TACATGCTGGTGTGCATGCAGTGGACG taccatttgtatagcccactccccagtggagacctcgcgtgtgtccacagttGGCCCTCCACTGCTCACATTAGTGAACTTTGAAGTTGAAAATCTGGCACTACATGCTGGTATGCATGCAGTGGACTgtaagtagattgtgctcaagatctaaggtgtgataggtgtatgctgctga Alignment from CESAR ttGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAAAATCTGGCG-TACATGCTGGTGTGCATGCAGTGGACG taccatttgtatagcccactccccagtggagacctcgcgtgtgtccacagttGGCCCTCCACTGCTCACATTAGTGAACTTTGAAGTTGAAAATCTGGCACTACATGCTGGTATGCATGCAGTGGACTgtaagtagattgtgctcaagatctaaggtgtgataggtgtatgctgctga Alignment from Spaln_aa2Genome TTGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAAAATCTGGCG-TACATGCTGGTGTGCATGCAGTGGACG taccatttgtatagcccactccccagtggagacctcgcgtgtgtccacagTTGGCCCTCCACTGCTCACATTAGTGAACTTTGAAGTTGAAAATCTGGCAcTACATGCTGGTATGCATGCAGTGGACTgtaagtagattgtgctcaagatctaaggtgtgataggtgtatgctgctga Alignment from Spaln_nt2Genome TTGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAAAATCTGGCG-TACATGCTGGTGTGCATGCAGTGGACG taccatttgtatagcccactccccagtggagacctcgcgtgtgtccacagTTGGCCCTCCACTGCTCACATTAGTGAACTTTGAAGTTGAAAATCTGGCACTACATGCTGGTATGCATGCAGTGGACTgtaagtagattgtgctcaagatctaaggtgtgataggtgtatgctgctga Alignment from Pairagon TTGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAAAATCTGGCG-TACATGCTGGTGTGCATGCAGTGGACG taccatttgtatagcccactccccagtggagacctcgcgtgtgtccacagTTGGCCCTCCACTGCTCACATTAGTGAACTTTGAAGTTGAAAATCTGGCACTACATGCTGGTATGCATGCAGTGGACTgtaagtagattgtgctcaagatctaaggtgtgataggtgtatgctgctga Alignment from Exonerate_protein2genome TTGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAAAATCTGGCG-TACATGCTGGTGTGCATGCAGTGGACG taccatttgtatagcccactccccagtggagacctcgcgtgtgtccacagTTGGCCCTCCACTGCTCACATTAGTGAACTTTGAAGTTGAAAATCTGGCACTACATGCTGGTATGCATGCAGTGGACTgtaagtagattgtgctcaagatctaaggtgtgataggtgtatgctgctga Alignment from Exonerate_coding2genome TTGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAAAATCTGGCG-TACATGCTGGTGTGCATGCAGTGGACG taccatttgtatagcccactccccagtggagacctcgcgtgtgtccacagTTGGCCCTCCACTGCTCACATTAGTGAACTTTGAAGTTGAAAATCTGGCACTACATGCTGGTATGCATGCAGTGGACTgtaagtagattgtgctcaagatctaaggtgtgataggtgtatgctgctga Alignment from GeneWise TTGGCCCTCCGCTGCTCACCTTGGTGAACTTTGAAGTTGAAAATCTG-GCGTACATGCTGGTGTGCATGCAGTGGACG taccatttgtatagcccactccccagtggagacctcgcgtgtgtccacagTTGGCCCTCCACTGCTCACATTAGTGAACTTTGAAGTTGAAAATCTGGCACTACATGCTGGTATGCATGCAGTGGACTgtaagtagattgtgctcaagatctaaggtgtgataggtgtatgctgctga #### Fads3_ID2666_9 --> 1 - 0 Original Alignment gGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAG-CATCGGGACTGGGCAAGCTCTCAG atggaataaattgaatcaaggatgctgttggtgtccttttgaacctccaggGTGCTGGAGAGCCACTGGTTTGTGTGGATCACACAGATGAACCACATCCCCAAGAAGATTGGCCATGAAAAGCCATCGGGACTGGGCAAGCTCTCAGgtaagaactgttaagcctgatggaaaaacatactagtcatggagtgactg Alignment from CESAR gGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAG-CATCGGGACTGGGCAAGCTCTCAG atggaataaattgaatcaaggatgctgttggtgtccttttgaacctccaggGTGCTGGAGAGCCACTGGTTTGTGTGGATCACACAGATGAACCACATCCCCAAGAAGATTGGCCATGAAAAGCCATCGGGACTGGGCAAGCTCTCAGgtaagaactgttaagcctgatggaaaaacatactagtcatggagtgactg Alignment from Spaln_aa2Genome GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAG-CATCGGGACTGGGCAAGCTCTCAG atggaataaattgaatcaaggatgctgttggtgtccttttgaacctccagGGTGCTGGAGAGCCACTGGTTTGTGTGGATCACACAGATGAACCACATCCCCAAGAAGATTGGCCATGAAAAGcCATCGGGACTGGGCAAGCTCTCAGgtaagaactgttaagcctgatggaaaaacatactagtcatggagtgactg Alignment from Spaln_nt2Genome GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAG-CATCGGGACTGGGCAAGCTCTCAG atggaataaattgaatcaaggatgctgttggtgtccttttgaacctccagGGTGCTGGAGAGCCACTGGTTTGTGTGGATCACACAGATGAACCACATCCCCAAGAAGATTGGCCATGAAAAGCCATCGGGACTGGGCAAGCTCTCAGgtaagaactgttaagcctgatggaaaaacatactagtcatggagtgactg Alignment from Pairagon GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAG-CATCGGGACTGGGCAAGCTCTCAG atggaataaattgaatcaaggatgctgttggtgtccttttgaacctccagGGTGCTGGAGAGCCACTGGTTTGTGTGGATCACACAGATGAACCACATCCCCAAGAAGATTGGCCATGAAAAGCCATCGGGACTGGGCAAGCTCTCAGgtaagaactgttaagcctgatggaaaaacatactagtcatggagtgactg Alignment from Exonerate_protein2genome GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAG-CATCGGGACTGGGCAAGCTCTCAG atggaataaattgaatcaaggatgctgttggtgtccttttgaacctccagGGTGCTGGAGAGCCACTGGTTTGTGTGGATCACACAGATGAACCACATCCCCAAGAAGATTGGCCATGAAAAGCCATCGGGACTGGGCAAGCTCTCAGgtaagaactgttaagcctgatggaaaaacatactagtcatggagtgactg Alignment from Exonerate_coding2genome GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAAAAG-CATCGGGACTGGGCAAGCTCTCAG atggaataaattgaatcaaggatgctgttggtgtccttttgaacctccagGGTGCTGGAGAGCCACTGGTTTGTGTGGATCACACAGATGAACCACATCCCCAAGAAGATTGGCCATGAAAAGCCATCGGGACTGGGCAAGCTCTCAGgtaagaactgttaagcctgatggaaaaacatactagtcatggagtgactg Alignment from GeneWise GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAGATTGGCCATGAA-AAGCATCGGGACTGGGCAAGCTCTCAG atggaataaattgaatcaaggatgctgttggtgtccttttgaacctccagGGTGCTGGAGAGCCACTGGTTTGTGTGGATCACACAGATGAACCACATCCCCAAGAAGATTGGCCATGAAAAGCCATCGGGACTGGGCAAGCTCTCAGgtaagaactgttaagcctgatggaaaaacatactagtcatggagtgactg #### Fads3_ID2667_10 --> 0 - 2 Original Alignment CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTC-ATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACca gccaaggtagcaaacaagttgtctctatgttttgccccctctctccacagTTGGCAGCCACCTGCAATGTTGAGTCATCACTTTTTCATTGACTGGTTCAGTGGTCACCTCAATTTTCAAATTGAGCACtagtaattatggcatggaggggttacttgctggggtccagacctagagccga Alignment from CESAR CTGGCAGCCACCTGCAATGTGGAACCTTCGCTC-TTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACca gccaaggtagcaaacaagttgtctctatgttttgccccctctctccacagTTGGCAGCCACCTGCAATGTTGAGTCATCACTTTTTCATTGACTGGTTCAGTGGTCACCTCAATTTTCAAATTGAGCACtagtaattatggcatggaggggttacttgctggggtccagacctagagccga Alignment from Spaln_aa2Genome CTGGCAGCCACCTGCAATGTGGAACCTTCGCTC-TTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gccaaggtagcaaacaagttgtctctatgttttgccccctctctccacagTTGGCAGCCACCTGCAATGTTGAGTCATCACTTtTTCATTGACTGGTTCAGTGGTCACCTCAATTTTCAAATTGAGCACTAgtaattatggcatggaggggttacttgctggggtccagacctagagccga Alignment from Spaln_nt2Genome CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTT-CATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gccaaggtagcaaacaagttgtctctatgttttgccccctctctccacagTTGGCAGCCACCTGCAATGTTGAGTCATCACTTTTTCATTGACTGGTTCAGTGGTCACCTCAATTTTCAAATTGAGCACTAgtaattatggcatggaggggttacttgctggggtccagacctagagccga Alignment from Pairagon CTGGCAGCCACCTGCAATGTGGAACCTTCGC-TCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gccaaggtagcaaacaagttgtctctatgttttgccccctctctccacagTTGGCAGCCACCTGCAATGTTGAGTCATCACTTTTTCATTGACTGGTTCAGTGGTCACCTCAATTTTCAAATTGAGCACTAgtaattatggcatggaggggttacttgctggggtccagacctagagccga Alignment from Exonerate_protein2genome CTGGCAGCCACCTGCAATGTGGAACCTTCGCTC-TTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gccaaggtagcaaacaagttgtctctatgttttgccccctctctccacagTTGGCAGCCACCTGCAATGTTGAGTCATCACTTTTTCATTGACTGGTTCAGTGGTCACCTCAATTTTCAAATTGAGCACTAgtaattatggcatggaggggttacttgctggggtccagacctagagccga Alignment from Exonerate_coding2genome CTGGCAGCCACCTGCAATGTGGAACCTTCGCTC-TTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gccaaggtagcaaacaagttgtctctatgttttgccccctctctccacagTTGGCAGCCACCTGCAATGTTGAGTCATCACTTTTTCATTGACTGGTTCAGTGGTCACCTCAATTTTCAAATTGAGCACTAgtaattatggcatggaggggttacttgctggggtccagacctagagccga Alignment from GeneWise CTGGCAGCCACCTGCAATGTGGAACCTTCG-CTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gccaaggtagcaaacaagttgtctctatgttttgccccctctctccacagTTGGCAGCCACCTGCAATGTTGAGTCATCACTTTTTCATTGACTGGTTCAGTGGTCACCTCAATTTTCAAATTGAGCACTAgtaattatggcatggaggggttacttgctggggtccagacctagagccga #### Fam160b1_ID12353_4 --> 0 - 0 Original Alignment TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATC-CGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactccagacctttgactacattctggttccttttctatttttcagTGCCCTCCAGGAATGAAACAGCAGGTGTTAGTACTTTATACCAAGCTTCTTGAGCGAATCCCAGCAACCACTACTCCCACATGTCAATGTGCACAGGCCAGTGCAGgtaagcactctccctaagtataaacatagtggagaacaatatcatagtat Alignment from CESAR TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATC-CGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactccagacctttgactacattctggttccttttctatttttcagTGCCCTCCAGGAATGAAACAGCAGGTGTTAGTACTTTATACCAAGCTTCTTGAGCGAATCCCAGCAACCACTACTCCCACATGTCAATGTGCACAGGCCAGTGCAGgtaagcactctccctaagtataaacatagtggagaacaatatcatagtat Alignment from Spaln_aa2Genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATC-CGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactccagacctttgactacattctggttccttttctatttttcagTGCCCTCCAGGAATGAAACAGCAGGTGTTAGTACTTTATACCAAGCTTCTTGAGCGAATCcCAGCAACCACTACTCCCACATGTCAATGTGCACAGGCCAGTGCAGgtaagcactctccctaagtataaacatagtggagaacaatatcatagtat Alignment from Spaln_nt2Genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCG-GCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactccagacctttgactacattctggttccttttctatttttcagTGCCCTCCAGGAATGAAACAGCAGGTGTTAGTACTTTATACCAAGCTTCTTGAGCGAATCCCAGCAACCACTACTCCCACATGTCAATGTGCACAGGCCAGTGCAGgtaagcactctccctaagtataaacatagtggagaacaatatcatagtat Alignment from Pairagon TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAAT-CCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactccagacctttgactacattctggttccttttctatttttcagTGCCCTCCAGGAATGAAACAGCAGGTGTTAGTACTTTATACCAAGCTTCTTGAGCGAATCCCAGCAACCACTACTCCCACATGTCAATGTGCACAGGCCAGTGCAGgtaagcactctccctaagtataaacatagtggagaacaatatcatagtat Alignment from Exonerate_protein2genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATC-CGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactccagacctttgactacattctggttccttttctatttttcagTGCCCTCCAGGAATGAAACAGCAGGTGTTAGTACTTTATACCAAGCTTCTTGAGCGAATCCCAGCAACCACTACTCCCACATGTCAATGTGCACAGGCCAGTGCAGgtaagcactctccctaagtataaacatagtggagaacaatatcatagtat Alignment from Exonerate_coding2genome TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATC-CGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactccagacctttgactacattctggttccttttctatttttcagTGCCCTCCAGGAATGAAACAGCAGGTGTTAGTACTTTATACCAAGCTTCTTGAGCGAATCCCAGCAACCACTACTCCCACATGTCAATGTGCACAGGCCAGTGCAGgtaagcactctccctaagtataaacatagtggagaacaatatcatagtat Alignment from GeneWise TGCCCTCCAGGAATGAAGCAGCAGGTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATC-CGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactccagacctttgactacattctggttccttttctatttttcagTGCCCTCCAGGAATGAAACAGCAGGTGTTAGTACTTTATACCAAGCTTCTTGAGCGAATCCCAGCAACCACTACTCCCACATGTCAATGTGCACAGGCCAGTGCAGgtaagcactctccctaagtataaacatagtggagaacaatatcatagtat #### Fam160b1_ID12356_7 --> 0 - 2 Original Alignment GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTG-ACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGgg ccatttatgctaaatctgacaagctccacttgtttctccttgtttctcagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTTGATGCTCTTGGTGAGCCTACCAGAGCCCGCAGCAGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGTGAGCTGCTGCACTGGCAGACTCACCTCCCTGTACAAGGCGTTACCTCAGTCAGTGGACCCCTTAGACATTGAAACTGTGGAGGCAGTTAACTGGgggtaccgactcattctgtacatttgatgatgggtatcagggttcggtaagc Alignment from CESAR GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTG-ACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGgg ccatttatgctaaatctgacaagctccacttgtttctccttgtttctcagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTTGATGCTCTTGGTGAGCCTACCAGAGCCCGCAGCAGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGTGAGCTGCTGCACTGGCAGACTCACCTCCCTGTACAAGGCGTTACCTCAGTCAGTGGACCCCTTAGACATTGAAACTGTGGAGGCAGTTAACTGGgggtaccgactcattctgtacatttgatgatgggtatcagggttcggtaagc Alignment from Spaln_aa2Genome GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTG-ACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG ccatttatgctaaatctgacaagctccacttgtttctccttgtttctcagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTTGATGCTCTTGGTGAGCCTACCAGAGCCCGCAGCAGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGTGAGCTGCTGcACTGGCAGACTCACCTCCCTGTACAAGGCGTTACCTCAGTCAGTGGACCCCTTAGACATTGAAACTGTGGAGGCAGTTAACTGGGGgtaccgactcattctgtacatttgatgatgggtatcagggttcggtaagc Alignment from Spaln_nt2Genome GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTG-ACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG ccatttatgctaaatctgacaagctccacttgtttctccttgtttctcagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTTGATGCTCTTGGTGAGCCTACCAGAGCCCGCAGCAGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGTGAGCTGCTGCACTGGCAGACTCACCTCCCTGTACAAGGCGTTACCTCAGTCAGTGGACCCCTTAGACATTGAAACTGTGGAGGCAGTTAACTGGGGgtaccgactcattctgtacatttgatgatgggtatcagggttcggtaagc Alignment from Pairagon GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTG-ACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG ccatttatgctaaatctgacaagctccacttgtttctccttgtttctcagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTTGATGCTCTTGGTGAGCCTACCAGAGCCCGCAGCAGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGTGAGCTGCTGCACTGGCAGACTCACCTCCCTGTACAAGGCGTTACCTCAGTCAGTGGACCCCTTAGACATTGAAACTGTGGAGGCAGTTAACTGGGGgtaccgactcattctgtacatttgatgatgggtatcagggttcggtaagc Alignment from Exonerate_protein2genome GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTG-ACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG ccatttatgctaaatctgacaagctccacttgtttctccttgtttctcagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTTGATGCTCTTGGTGAGCCTACCAGAGCCCGCAGCAGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGTGAGCTGCTGCACTGGCAGACTCACCTCCCTGTACAAGGCGTTACCTCAGTCAGTGGACCCCTTAGACATTGAAACTGTGGAGGCAGTTAACTGGGGgtaccgactcattctgtacatttgatgatgggtatcagggttcggtaagc Alignment from Exonerate_coding2genome GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTG-ACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG ccatttatgctaaatctgacaagctccacttgtttctccttgtttctcagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTTGATGCTCTTGGTGAGCCTACCAGAGCCCGCAGCAGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGTGAGCTGCTGCACTGGCAGACTCACCTCCCTGTACAAGGCGTTACCTCAGTCAGTGGACCCCTTAGACATTGAAACTGTGGAGGCAGTTAACTGGGGgtaccgactcattctgtacatttgatgatgggtatcagggttcggtaagc Alignment from GeneWise GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTG-CTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG ccatttatgctaaatctgacaagctccacttgtttctccttgtttctcagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTTGATGCTCTTGGTGAGCCTACCAGAGCCCGCAGCAGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGTGAGCTGCTGCACTGGCAGACTCACCTCCCTGTACAAGGCGTTACCTCAGTCAGTGGACCCCTTAGACATTGAAACTGTGGAGGCAGTTAACTGGGGgtaccgactcattctgtacatttgatgatgggtatcagggttcggtaagc #### Fam160b1_ID12357_8 --> 1 - 0 Original Alignment gTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTC-CCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG ccctttgtccaaatcttgtgtacctttaaatttgttgctttcatcaataggTTGGACTCATACAGCCATAAAGAAGACACTTCGGCGTTCCCCGGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgggtagcttgatattatattcatagtgtgtgtggtcattgagccgact Alignment from CESAR gTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCG-GGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG ccctttgtccaaatcttgtgtacctttaaatttgttgctttcatcaataggTTGGACTCATACAGCCATAAAGAAGACACTTCGGCGTTCCCCGGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgggtagcttgatattatattcatagtgtgtgtggtcattgagccgact Alignment from Spaln_aa2Genome GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCG-GGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG ccctttgtccaaatcttgtgtacctttaaatttgttgctttcatcaatagGTTGGACTCATACAGCCATAAAGAAGACACTTCGGCGTTCCCCgGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgggtagcttgatattatattcatagtgtgtgtggtcattgagccgact Alignment from Spaln_nt2Genome GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCG-GGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG ccctttgtccaaatcttgtgtacctttaaatttgttgctttcatcaatagGTTGGACTCATACAGCCATAAAGAAGACACTTCGGCGTTCCCCGGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgggtagcttgatattatattcatagtgtgtgtggtcattgagccgact Alignment from Pairagon GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTT-CCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG ccctttgtccaaatcttgtgtacctttaaatttgttgctttcatcaatagGTTGGACTCATACAGCCATAAAGAAGACACTTCGGCGTTCCCCGGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgggtagcttgatattatattcatagtgtgtgtggtcattgagccgact Alignment from Exonerate_protein2genome GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTC-CCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG ccctttgtccaaatcttgtgtacctttaaatttgttgctttcatcaatagGTTGGACTCATACAGCCATAAAGAAGACACTTCGGCGTTCCCCGGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgggtagcttgatattatattcatagtgtgtgtggtcattgagccgact Alignment from Exonerate_coding2genome GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTC-CCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG ccctttgtccaaatcttgtgtacctttaaatttgttgctttcatcaatagGTTGGACTCATACAGCCATAAAGAAGACACTTCGGCGTTCCCCGGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgggtagcttgatattatattcatagtgtgtgtggtcattgagccgact Alignment from GeneWise GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGG-AAGCGGGCCTTAATTTCATTTCTTTCCTGGTTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG ccctttgtccaaatcttgtgtacctttaaatttgttgctttcatcaatagGTTGGACTCATACAGCCATAAAGAAGACACTTCGGCGTTCCCCGGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtgggtagcttgatattatattcatagtgtgtgtggtcattgagccgact #### Fam160b1_ID12358_9 --> 0 - 2 Original Alignment ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTT-GGTGTCATGGAACCCCAGCTGATGCAGac ccattataccttggatgttataagttttaaattttccttattgattacagACTGCTGCTGTTGCTCTTGCCAAAGCTATCCACAAAAGGTTCTTTGTTCGGTGTTATGGAACCCCAGCTGATGCAGacgtgagtgtcctctcacttcgcaggcaacaaaccatgctgtatcttttcct Alignment from CESAR ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTT-GGTGTCATGGAACCCCAGCTGATGCAGac ccattataccttggatgttataagttttaaattttccttattgattacagACTGCTGCTGTTGCTCTTGCCAAAGCTATCCACAAAAGGTTCTTTGTTCGGTGTTATGGAACCCCAGCTGATGCAGacgtgagtgtcctctcacttcgcaggcaacaaaccatgctgtatcttttcct Alignment from Spaln_aa2Genome ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTT-GGTGTCATGGAACCCCAGCTGATGCAGAC ccattataccttggatgttataagttttaaattttccttattgattacagACTGCTGCTGTTGCTCTTGCCAAAGCTATCCACAAAAGGTTCTTTGTTcGGTGTTATGGAACCCCAGCTGATGCAGACgtgagtgtcctctcacttcgcaggcaacaaaccatgctgtatcttttcct Alignment from Spaln_nt2Genome ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTT-GGTGTCATGGAACCCCAGCTGATGCAGAC ccattataccttggatgttataagttttaaattttccttattgattacagACTGCTGCTGTTGCTCTTGCCAAAGCTATCCACAAAAGGTTCTTTGTTCGGTGTTATGGAACCCCAGCTGATGCAGACgtgagtgtcctctcacttcgcaggcaacaaaccatgctgtatcttttcct Alignment from Pairagon ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTT-GGTGTCATGGAACCCCAGCTGATGCAGAC ccattataccttggatgttataagttttaaattttccttattgattacagACTGCTGCTGTTGCTCTTGCCAAAGCTATCCACAAAAGGTTCTTTGTTCGGTGTTATGGAACCCCAGCTGATGCAGACgtgagtgtcctctcacttcgcaggcaacaaaccatgctgtatcttttcct Alignment from Exonerate_protein2genome ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTT-GGTGTCATGGAACCCCAGCTGATGCAGAC ccattataccttggatgttataagttttaaattttccttattgattacagACTGCTGCTGTTGCTCTTGCCAAAGCTATCCACAAAAGGTTCTTTGTTCGGTGTTATGGAACCCCAGCTGATGCAGACgtgagtgtcctctcacttcgcaggcaacaaaccatgctgtatcttttcct Alignment from Exonerate_coding2genome ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTT-GGTGTCATGGAACCCCAGCTGATGCAGAC ccattataccttggatgttataagttttaaattttccttattgattacagACTGCTGCTGTTGCTCTTGCCAAAGCTATCCACAAAAGGTTCTTTGTTCGGTGTTATGGAACCCCAGCTGATGCAGACgtgagtgtcctctcacttcgcaggcaacaaaccatgctgtatcttttcct Alignment from GeneWise ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTT-GTTGGTGTCATGGAACCCCAGCTGATGCAGAC ccattataccttggatgttataagttttaaattttccttattgattacagACTGCTGCTGTTGCTCTTGCCAAAGCTATCCACAAAAGGTTCTTTGTTCGGTGTTATGGAACCCCAGCTGATGCAGACgtgagtgtcctctcacttcgcaggcaacaaaccatgctgtatcttttcct #### Fam160b1_ID12359_10 --> 1 - 0 Original Alignment cTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTG-CACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG accatgctgtatcttttcctggtgctgtgcttttattttcctgctttcagaTCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACCACCGTATTGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGTTATGGTTGTCTTCATACTTGCAGAACAAAAAGAGCCAGAAACTTTGTCAGAGATTAGCAGACACCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtaagtcacatcaagccgctgtgtacacatgtagcatggagatatgaggg Alignment from CESAR cTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTG-CACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG accatgctgtatcttttcctggtgctgtgcttttattttcctgctttcagaTCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACCACCGTATTGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGTTATGGTTGTCTTCATACTTGCAGAACAAAAAGAGCCAGAAACTTTGTCAGAGATTAGCAGACACCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtaagtcacatcaagccgctgtgtacacatgtagcatggagatatgaggg Alignment from Spaln_aa2Genome CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTG-CACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG accatgctgtatcttttcctggtgctgtgcttttattttcctgctttcagATCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTAcCACCGTATTGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGTTATGGTTGTCTTCATACTTGCAGAACAAAAAGAGCCAGAAACTTTGTCAGAGATTAGCAGACACCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtaagtcacatcaagccgctgtgtacacatgtagcatggagatatgaggg Alignment from Spaln_nt2Genome CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTGC-ACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG accatgctgtatcttttcctggtgctgtgcttttattttcctgctttcagATCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACCACCGTATTGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGTTATGGTTGTCTTCATACTTGCAGAACAAAAAGAGCCAGAAACTTTGTCAGAGATTAGCAGACACCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtaagtcacatcaagccgctgtgtacacatgtagcatggagatatgaggg Alignment from Pairagon CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTG-CACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG accatgctgtatcttttcctggtgctgtgcttttattttcctgctttcagATCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACCACCGTATTGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGTTATGGTTGTCTTCATACTTGCAGAACAAAAAGAGCCAGAAACTTTGTCAGAGATTAGCAGACACCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtaagtcacatcaagccgctgtgtacacatgtagcatggagatatgaggg Alignment from Exonerate_protein2genome CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTG-CACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG accatgctgtatcttttcctggtgctgtgcttttattttcctgctttcagATCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACCACCGTATTGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGTTATGGTTGTCTTCATACTTGCAGAACAAAAAGAGCCAGAAACTTTGTCAGAGATTAGCAGACACCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtaagtcacatcaagccgctgtgtacacatgtagcatggagatatgaggg Alignment from Exonerate_coding2genome CTCTGAGATGGGGATTCTGACCTCGACGGCCTTGCTG-CACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG accatgctgtatcttttcctggtgctgtgcttttattttcctgctttcagATCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACCACCGTATTGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGTTATGGTTGTCTTCATACTTGCAGAACAAAAAGAGCCAGAAACTTTGTCAGAGATTAGCAGACACCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtaagtcacatcaagccgctgtgtacacatgtagcatggagatatgaggg Alignment from GeneWise CTCTGAGATGGGGATTCTGACCTCGACGGCCTTG-CTGCACCGCATCGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGAAATGGTGGTCTTCATCCTCGGAGAACAGAGGGAGCCAGAAACTCTGTCAGAAATTAGCAGACATCCTCTAAGACATAGGTTAATCGAACATTGCGATCACATATCTGATGAG accatgctgtatcttttcctggtgctgtgcttttattttcctgctttcagATCTGAGATGGGAATTCTGACCTCAACTGCCCTGCTACCACCGTATTGTCCGGCAAGTGACCTCAGACGTCCTGCTTCAGGTTATGGTTGTCTTCATACTTGCAGAACAAAAAGAGCCAGAAACTTTGTCAGAGATTAGCAGACACCCACTAAGACATAGGTTAATTGAACATTGTGATCACATCTCTGATGAGgtaagtcacatcaagccgctgtgtacacatgtagcatggagatatgaggg #### Fas_ID6925_6 --> 2 - 1 Original Alignment gtCCCAGAAATCGCCTATGGTTGTTGACCATCCTT-GTTTTGTTAATTCCACTTg cagtgatctgcccctgcttaagaaaattctgggtcttgtgctattaacaggtCCCAGAAATTGCCTATGGTTGTTGACCATCCTTCGTTTTGTTGATTCCACTTggtatttctaaaggtgttcggggtgaatattaaggtgatgttgagaagtag Alignment from CESAR gtCCCAGAAATCGCCTATGGTTGTTGACCATCCTT-GTTTTGTTAATTCCACTTg cagtgatctgcccctgcttaagaaaattctgggtcttgtgctattaacaggtCCCAGAAATTGCCTATGGTTGTTGACCATCCTTCGTTTTGTTGATTCCACTTggtatttctaaaggtgttcggggtgaatattaaggtgatgttgagaagtag Alignment from Spaln_aa2Genome GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTT-GTTTTGTTAATTCCACTTG cagtgatctgcccctgcttaagaaaattctgggtcttgtgctattaacagGTCCCAGAAATTGCCTATGGTTGTTGACCATCCTTcGTTTTGTTGATTCCACTTGgtatttctaaaggtgttcggggtgaatattaaggtgatgttgagaagtag Alignment from Spaln_nt2Genome GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTT-GTTTTGTTAATTCCACTTG cagtgatctgcccctgcttaagaaaattctgggtcttgtgctattaacagGTCCCAGAAATTGCCTATGGTTGTTGACCATCCTTCGTTTTGTTGATTCCACTTGgtatttctaaaggtgttcggggtgaatattaaggtgatgttgagaagtag Alignment from Pairagon GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTT-GTTTTGTTAATTCCACTTG cagtgatctgcccctgcttaagaaaattctgggtcttgtgctattaacagGTCCCAGAAATTGCCTATGGTTGTTGACCATCCTTCGTTTTGTTGATTCCACTTGgtatttctaaaggtgttcggggtgaatattaaggtgatgttgagaagtag Alignment from Exonerate_protein2genome GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTT-GTTTTGTTAATTCCACTTG cagtgatctgcccctgcttaagaaaattctgggtcttgtgctattaacagGTCCCAGAAATTGCCTATGGTTGTTGACCATCCTTCGTTTTGTTGATTCCACTTGgtatttctaaaggtgttcggggtgaatattaaggtgatgttgagaagtag Alignment from Exonerate_coding2genome GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTT-GTTTTGTTAATTCCACTTG cagtgatctgcccctgcttaagaaaattctgggtcttgtgctattaacagGTCCCAGAAATTGCCTATGGTTGTTGACCATCCTTCGTTTTGTTGATTCCACTTGgtatttctaaaggtgttcggggtgaatattaaggtgatgttgagaagtag Alignment from GeneWise GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTT-GTTTTGTTAATTCCACTTG cagtgatctgcccctgcttaagaaaattctgggtcttgtgctattaacagGTCCCAGAAATTGCCTATGGTTGTTGACCATCCTTCGTTTTGTTGATTCCACTTGgtatttctaaaggtgttcggggtgaatattaaggtgatgttgagaagtag #### Fau_ID1403_3 --> 2 - 0 Original Alignment gtAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAA-GTGAGAGGTCAGACTCCCAAG agatgtgactctgctacttaacctgacctaagatagatttatttttctaggtATAGTTCATGGCTCCCTTGCTCGGGCTGGAAAACGTAAGAGGCCAGACTCCTAAAgtaatagataggggtgaagtttgttactgtcctttaaaccggtataagca Alignment from CESAR gtAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAA-GTGAGAGGTCAGACTCCCAAG agatgtgactctgctacttaacctgacctaagatagatttatttttctaggtATAGTTCATGGCTCCCTTGCTCGGGCTGGAAAACGTAAGAGGCCAGACTCCTAAAgtaatagataggggtgaagtttgttactgtcctttaaaccggtataagca Alignment from Spaln_aa2Genome GTAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAA-GTGAGAGGTCAGACTCCCAAG agatgtgactctgctacttaacctgacctaagatagatttatttttctagGTATAGTTCATGGCTCCCTTGCTCGGGCTGGAAAAcGTAAGAGGCCAGACTCCTAAAgtaatagataggggtgaagtttgttactgtcctttaaaccggtataagca Alignment from Spaln_nt2Genome GTAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAA-GTGAGAGGTCAGACTCCCAAG agatgtgactctgctacttaacctgacctaagatagatttatttttctagGTATAGTTCATGGCTCCCTTGCTCGGGCTGGAAAACGTAAGAGGCCAGACTCCTAAAgtaatagataggggtgaagtttgttactgtcctttaaaccggtataagca Alignment from Pairagon GTAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAA-GTGAGAGGTCAGACTCCCAAG agatgtgactctgctacttaacctgacctaagatagatttatttttctagGTATAGTTCATGGCTCCCTTGCTCGGGCTGGAAAACGTAAGAGGCCAGACTCCTAAAgtaatagataggggtgaagtttgttactgtcctttaaaccggtataagca Alignment from Exonerate_protein2genome GTAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAA-GTGAGAGGTCAGACTCCCAAG agatgtgactctgctacttaacctgacctaagatagatttatttttctagGTATAGTTCATGGCTCCCTTGCTCGGGCTGGAAAACGTAAGAGGCCAGACTCCTAAAgtaatagataggggtgaagtttgttactgtcctttaaaccggtataagca Alignment from Exonerate_coding2genome GTAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAA-GTGAGAGGTCAGACTCCCAAG agatgtgactctgctacttaacctgacctaagatagatttatttttctagGTATAGTTCATGGCTCCCTTGCTCGGGCTGGAAAACGTAAGAGGCCAGACTCCTAAAgtaatagataggggtgaagtttgttactgtcctttaaaccggtataagca Alignment from GeneWise agatgtgactctgctacttaacctgacctaagatagatttatttttctaggtatagttcatggctcccttgctcgggctggaaaacgtaagaggccagactcctaaagtaatagataggggtgaagtttgttactgtcctttaaaccggtataagca #### Fgf8_ID9566_3 --> 0 - 0 Original Alignment GAAGGCCCGGGCGGGGGGCCT-GCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG cttataagtctcatgagtcagggcatggtctgttcttgccccttctatagGGAGGCCCAGGTGGGGGGCCTCGCGCTGGGCAGGGAGCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCCAAGGTGTTTCCCAACAAgtgagatcagactctcccatgcctgggtttgtctatccattccaggcttg Alignment from CESAR GAAGGCCCGGGCGGGGGGCCT-GCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG cttataagtctcatgagtcagggcatggtctgttcttgccccttctatagGGAGGCCCAGGTGGGGGGCCTCGCGCTGGGCAGGGAGCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCCAAGGTGTTTCCCAACAAgtgagatcagactctcccatgcctgggtttgtctatccattccaggcttg Alignment from Spaln_aa2Genome GGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG cttataagtctcatgagtcagggcatggtctgttcttgccccttctatagggaggcccagGTGGGGGGCCTCGCGCTGGGCAGGGAGCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCCAAGGTGTTTCCCAACAAgtgagatcagactctcccatgcctgggtttgtctatccattccaggcttg Alignment from Spaln_nt2Genome GAAGGCCCGGGCGGGGGGCCT-GCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG cttataagtctcatgagtcagggcatggtctgttcttgccccttctatagGGAGGCCCAGGTGGGGGGCCTCGCGCTGGGCAGGGAGCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCCAAGGTGTTTCCCAACAAgtgagatcagactctcccatgcctgggtttgtctatccattccaggcttg Alignment from Pairagon GAAGGCCCGGGCGGGGGGCCT-GCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG cttataagtctcatgagtcagggcatggtctgttcttgccccttctatagGGAGGCCCAGGTGGGGGGCCTCGCGCTGGGCAGGGAGCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCCAAGGTGTTTCCCAACAAgtgagatcagactctcccatgcctgggtttgtctatccattccaggcttg Alignment from Exonerate_protein2genome GAAGGCCCGGGCGGGGGGCCT-GCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG cttataagtctcatgagtcagggcatggtctgttcttgccccttctatagGGAGGCCCAGGTGGGGGGCCTCGCGCTGGGCAGGGAGCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCCAAGGTGTTTCCCAACAAgtgagatcagactctcccatgcctgggtttgtctatccattccaggcttg Alignment from Exonerate_coding2genome GAAGGCCCGGGCGGGGGGCCT-GCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG cttataagtctcatgagtcagggcatggtctgttcttgccccttctatagGGAGGCCCAGGTGGGGGGCCTCGCGCTGGGCAGGGAGCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCCAAGGTGTTTCCCAACAAgtgagatcagactctcccatgcctgggtttgtctatccattccaggcttg Alignment from GeneWise ---CTGAGCTGCCTGCTGTTGCACTTGCTGGTTCTCTGCCTCCAAGCCCAGGAAGGCCCGGGCGGGGGGCCTGCGCTGGGCAGGGAGCCCACTTCCCTGCTCCGAGCTGGCCGGGAGCCCCAGGGTGTTTCCCAACAG CTTATAAGTCTCATGAGTCAGGGCATGGTCTGTTCTTGCCCCTTCTATAGGGAGGCCCAGGTGGGGGGCCTCGCGCTGGGCAGGGAGCCCACATCCCTGCTCCGAGCTGGCCGGGAGCCCCAAGGTGTTTCCCAACAAgtgagatcagactctcccatgcctgggtttgtctatccattccaggcttg #### Fibp_ID1009_6 --> 2 - 2 Original Alignment acTCTCAGGTGGACGAC-ATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGag atatccaagatgttttatgcatatggaaaactgtagaaaaacttttacagacCCTCAGGTGGATGACCATGGATGTTGACTTAGATAAAGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTTGTGGCTGACAAGGACCTCCTAGACCTGCACAAGaggtaagggtgggatacatgggggcataggttacaacactcagtttatagaa Alignment from CESAR acTCTCAGGTGGACGAC-ATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGag atatccaagatgttttatgcatatggaaaactgtagaaaaacttttacagacCCTCAGGTGGATGACCATGGATGTTGACTTAGATAAAGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTTGTGGCTGACAAGGACCTCCTAGACCTGCACAAGaggtaagggtgggatacatgggggcataggttacaacactcagtttatagaa Alignment from Spaln_aa2Genome ACTCTCAGGTGGACGAC-ATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG atatccaagatgttttatgcatatggaaaactgtagaaaaacttttacagACCCTCAGGTGGATGACcATGGATGTTGACTTAGATAAAGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTTGTGGCTGACAAGGACCTCCTAGACCTGCACAAGAGgtaagggtgggatacatgggggcataggttacaacactcagtttatagaa Alignment from Spaln_nt2Genome ACTCTCAGGTGGACGAC-ATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG atatccaagatgttttatgcatatggaaaactgtagaaaaacttttacagACCCTCAGGTGGATGACCATGGATGTTGACTTAGATAAAGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTTGTGGCTGACAAGGACCTCCTAGACCTGCACAAGAGgtaagggtgggatacatgggggcataggttacaacactcagtttatagaa Alignment from Pairagon ACTCTCAGGTGGACGA-CATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG atatccaagatgttttatgcatatggaaaactgtagaaaaacttttacagACCCTCAGGTGGATGACCATGGATGTTGACTTAGATAAAGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTTGTGGCTGACAAGGACCTCCTAGACCTGCACAAGAGgtaagggtgggatacatgggggcataggttacaacactcagtttatagaa Alignment from Exonerate_protein2genome ACTCTCAGGTGGACGAC-ATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG atatccaagatgttttatgcatatggaaaactgtagaaaaacttttacagACCCTCAGGTGGATGACCATGGATGTTGACTTAGATAAAGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTTGTGGCTGACAAGGACCTCCTAGACCTGCACAAGAGgtaagggtgggatacatgggggcataggttacaacactcagtttatagaa Alignment from Exonerate_coding2genome ACTCTCAGGTGGACGAC-ATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG atatccaagatgttttatgcatatggaaaactgtagaaaaacttttacagACCCTCAGGTGGATGACCATGGATGTTGACTTAGATAAAGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTTGTGGCTGACAAGGACCTCCTAGACCTGCACAAGAGgtaagggtgggatacatgggggcataggttacaacactcagtttatagaa Alignment from GeneWise TCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG atatccaagatgttttatgcatatggaaaactgtagaaaaacttttacagaccctcagGTGGATGACC---ATGGATGTTGACTTAGATAAAGAGTTTCTCCAAGACTTGAAGGAGCTCAAGGTTCTTGTGGCTGACAAGGACCTCCTAGACCTGCACAAGAGgtaagggtgggatacatgggggcataggttacaacactcagtttatagaa #### Fibp_ID1011_8 --> 0 - 0 Original Alignment AATCTGTCTCGGGGGCTGGTGAAC-GTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG cccacattaaaagcaggaggcagaaccactgagggaccttgttcttgcagAATCTGTCTAGGGGTCTGGTGAATCGTGGCTGCCAAG------CACAATAAGGATGTCAGAGTCTTATTCGTAGACCTTTTGGAGAAGgtaagaagtgcttagatgtgtggcagtcacgggaccaggggcagggccag Alignment from CESAR AATCTGTCTCGGGGGCTGGTGAAC-GTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG cccacattaaaagcaggaggcagaaccactgagggaccttgttcttgcagAATCTGTCTAGGGGTCTGGTGAATCGTGGCTGCCAAG------CACAATAAGGATGTCAGAGTCTTATTCGTAGACCTTTTGGAGAAGgtaagaagtgcttagatgtgtggcagtcacgggaccaggggcagggccag Alignment from Spaln_aa2Genome AATCTGTCTCGGGGGCTGGTGAAC-GTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG cccacattaaaagcaggaggcagaaccactgagggaccttgttcttgcagAATCTGTCTAGGGGTCTGGTGAATcGTGGCTGCCAAG------CACAATAAGGATGTCAGAGTCTTATTCGTAGACCTTTTGGAGAAGgtaagaagtgcttagatgtgtggcagtcacgggaccaggggcagggccag Alignment from Spaln_nt2Genome AATCTGTCTCGGGGGCTGGTGAA-CGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG cccacattaaaagcaggaggcagaaccactgagggaccttgttcttgcagAATCTGTCTAGGGGTCTGGTGAATCGTGGCTGCCAAG------CACAATAAGGATGTCAGAGTCTTATTCGTAGACCTTTTGGAGAAGgtaagaagtgcttagatgtgtggcagtcacgggaccaggggcagggccag Alignment from Pairagon AATCTGTCTCGGGGGCTGGTGAA-CGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG cccacattaaaagcaggaggcagaaccactgagggaccttgttcttgcagAATCTGTCTAGGGGTCTGGTGAATCGTGGCTGCCAAG------CACAATAAGGATGTCAGAGTCTTATTCGTAGACCTTTTGGAGAAGgtaagaagtgcttagatgtgtggcagtcacgggaccaggggcagggccag Alignment from Exonerate_protein2genome AATCTGTCTCGGGGGCTGGTGAAC-GTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG cccacattaaaagcaggaggcagaaccactgagggaccttgttcttgcagAATCTGTCTAGGGGTCTGGTGAATCGTGGCTGCCAAG------CACAATAAGGATGTCAGAGTCTTATTCGTAGACCTTTTGGAGAAGgtaagaagtgcttagatgtgtggcagtcacgggaccaggggcagggccag Alignment from Exonerate_coding2genome AATCTGTCTCGGGGGCTGGTGAAC-GTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG cccacattaaaagcaggaggcagaaccactgagggaccttgttcttgcagAATCTGTCTAGGGGTCTGGTGAATCGTGGCTGCCAAG------CACAATAAGGATGTCAGAGTCTTATTCGTAGACCTTTTGGAGAAGgtaagaagtgcttagatgtgtggcagtcacgggaccaggggcagggccag Alignment from GeneWise AATCTGTCTCGGGGGCTGGTGAAC-GTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG cccacattaaaagcaggaggcagaaccactgagggaccttgttcttgcagAATCTGTCTAGGGGTCTGGTGAATCGTGGCTGCCAAG------CACAATAAGGATGTCAGAGTCTTATTCGTAGACCTTTTGGAGAAGgtaagaagtgcttagatgtgtggcagtcacgggaccaggggcagggccag #### Fibp_ID1012_9 --> 0 - 2 Original Alignment TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCAC-TCCCTGGATGGCTTCcg agttgagcacaggactgtttgtggtgacggcctcaccgtctgtctttcagTTTGTTGAACCATGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCTTAGCCAGTATTCAGTGTCAGTCCATCTCCCTGGATGGTTTCcggtaaagagtggtaagcatgtttgctagcttccttggcctccttgctgctc Alignment from CESAR TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCAC-TCCCTGGATGGCTTCcg agttgagcacaggactgtttgtggtgacggcctcaccgtctgtctttcagTTTGTTGAACCATGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCTTAGCCAGTATTCAGTGTCAGTCCATCTCCCTGGATGGTTTCcggtaaagagtggtaagcatgtttgctagcttccttggcctccttgctgctc Alignment from Spaln_aa2Genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCAC-TCCCTGGATGGCTTCCG agttgagcacaggactgtttgtggtgacggcctcaccgtctgtctttcagTTTGTTGAACCATGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCTTAGCCAGTATTCAGTGTCAGTCCATcTCCCTGGATGGTTTCCGgtaaagagtggtaagcatgtttgctagcttccttggcctccttgctgctc Alignment from Spaln_nt2Genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCA-CTCCCTGGATGGCTTCCG agttgagcacaggactgtttgtggtgacggcctcaccgtctgtctttcagTTTGTTGAACCATGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCTTAGCCAGTATTCAGTGTCAGTCCATCTCCCTGGATGGTTTCCGgtaaagagtggtaagcatgtttgctagcttccttggcctccttgctgctc Alignment from Pairagon TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCA-CTCCCTGGATGGCTTCCG agttgagcacaggactgtttgtggtgacggcctcaccgtctgtctttcagTTTGTTGAACCATGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCTTAGCCAGTATTCAGTGTCAGTCCATCTCCCTGGATGGTTTCCGgtaaagagtggtaagcatgtttgctagcttccttggcctccttgctgctc Alignment from Exonerate_protein2genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCAC-TCCCTGGATGGCTTCCG agttgagcacaggactgtttgtggtgacggcctcaccgtctgtctttcagTTTGTTGAACCATGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCTTAGCCAGTATTCAGTGTCAGTCCATCTCCCTGGATGGTTTCCGgtaaagagtggtaagcatgtttgctagcttccttggcctccttgctgctc Alignment from Exonerate_coding2genome TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCAC-TCCCTGGATGGCTTCCG agttgagcacaggactgtttgtggtgacggcctcaccgtctgtctttcagTTTGTTGAACCATGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCTTAGCCAGTATTCAGTGTCAGTCCATCTCCCTGGATGGTTTCCGgtaaagagtggtaagcatgtttgctagcttccttggcctccttgctgctc Alignment from GeneWise TTTGTGGAACCCTGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTCCTCAGCCAGTATTCAGCGTCAGTCCACTCCCTGGATGGCTT agttgagcacaggactgtttgtggtgacggcctcaccgtctgtctttcagTTTGTTGAACCATGCCGCTCTGACCACTGGCCACTGAGTGATGTGCGGCTCTTTCTTAGCCAGTATTCAGTGTCAGTCCAT---CTCCCTGGATGgtttccggtaaagagtggtaagcatgtttgctagcttccttggcctccttgctgctc #### Fkbp2_ID1945_4 --> 2 - 1 Original Alignment ggTATGGAGAGCGGGGA-GCCCCCCCAAAGATCCCAg gtG agaagagtgcctggaccccacttaacttcctttccctcctacctggtcaggtTATGGGGAATGGGGACGCCCCCCCAAAGATCCCAggtaagacccctaccaccctgacctctgggtttatttatgtcttctaggtG Alignment from CESAR ggTATGGAGAGCGGGGA-GCCCCCCCAAAGATCCCAg gtG agaagagtgcctggaccccacttaacttcctttccctcctacctggtcaggtTATGGGGAATGGGGACGCCCCCCCAAAGATCCCAggtaagacccctaccaccctgacctcaaaatatgtgtctgtgttttaggtG Alignment from Spaln_aa2Genome GGTATGGAGAGCGGGGA-GCCCCCCCAAAGATCCCAG GTG agaagagtgcctggaccccacttaacttcctttccctcctacctggtcagGTTATGGGGAATGGGGAcGCCCCCCCAAAGATCCCAGgtaagacccctaccaccctgacctctgggtttatttatgtcttctagGTG Alignment from Spaln_nt2Genome GGTATGGAGAGCGGGGA-GCCCCCCCAAAGATCCCAG GTG agaagagtgcctggaccccacttaacttcctttccctcctacctggtcagGTTATGGGGAATGGGGACGCCCCCCCAAAGATCCCAGgtaagacccctaccaccctgacctctgggtttatttatgtcttctagGTG Alignment from Pairagon GGTATGGAGAGCGGGGA-GCCCCCCCAAAGATCCCAG GTG agaagagtgcctggaccccacttaacttcctttccctcctacctggtcagGTTATGGGGAATGGGGACGCCCCCCCAAAGATCCCAGgtaagacccctaccaccctgacctctgggtttatttatgtcttctagGTG Alignment from Exonerate_protein2genome GGTATGGAGAGCGGGGA-GCCCCCCCAAAGATCCCAG GTG agaagagtgcctggaccccacttaacttcctttccctcctacctggtcagGTTATGGGGAATGGGGACGCCCCCCCAAAGATCCCAGgtaagacccctaccaccctgacctctgggtttatttatgtcttctagGTG Alignment from Exonerate_coding2genome AGCCCCCCCAAAGATCCCAGGTG agaagagtgcctggaccccacttaacttcctttccctcctacctggtcaggttatggggaatggggacgcccccccaaagatcccaggtaagacccctaccaccctgacctctgGGTTTATTTATGTCTTCTAGGTG Alignment from GeneWise -----GGGTATGGAGAGCGGGGAGCCCCCCCAAAGATCCCAGGTG agaagagtgcctggaccccacttaacttcctttccctcctacctggtcaggttatggggaatggggacgcccccccaaagatcccaggtaagACCCCTACCACCCTGACCTCTGGGTTTATTTATGTCTTCTAGGTG #### Fkbp2_ID1947_2 --> 0 - 2 Original Alignment GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTC-TCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGgg gtggaacaacctctcctgactaggttttacttgtccctttcccttctcagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATCTTCCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTACTGgggtgagtctcgcctttaatacaagttgtagtgagtgctacagtgagtgggt Alignment from CESAR GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTC-TCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGgg gtggaacaacctctcctgactaggttttacttgtccctttcccttctcagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATCTTCCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTACTGgggtgagtctcgcctttaatacaagttgtagtgagtgctacagtgagtgggt Alignment from Spaln_aa2Genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTC-TCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gtggaacaacctctcctgactaggttttacttgtccctttcccttctcagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATCTTCcTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTACTGGGgtgagtctcgcctttaatacaagttgtagtgagtgctacagtgagtgggt Alignment from Spaln_nt2Genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTC-TCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gtggaacaacctctcctgactaggttttacttgtccctttcccttctcagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATCTTCCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTACTGGGgtgagtctcgcctttaatacaagttgtagtgagtgctacagtgagtgggt Alignment from Pairagon GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGT-TTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gtggaacaacctctcctgactaggttttacttgtccctttcccttctcagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATCTTCCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTACTGGGgtgagtctcgcctttaatacaagttgtagtgagtgctacagtgagtgggt Alignment from Exonerate_protein2genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTC-TCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gtggaacaacctctcctgactaggttttacttgtccctttcccttctcagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATCTTCCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTACTGGGgtgagtctcgcctttaatacaagttgtagtgagtgctacagtgagtgggt Alignment from Exonerate_coding2genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTC-TCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gtggaacaacctctcctgactaggttttacttgtccctttcccttctcagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATCTTCCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTACTGGGgtgagtctcgcctttaatacaagttgtagtgagtgctacagtgagtgggt Alignment from GeneWise GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTC-TCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gtggaacaacctctcctgactaggttttacttgtccctttcccttctcagGGAAAGCTAGAAGATGGGACAGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATCTTCCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTACTGGGgtgagtctcgcctttaatacaagttgtagtgagtgctacagtgagtgggt #### Fth1_ID2624_3 --> 0 - 0 Original Alignment AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACT-GACAAGAATGATCCCCAC tgctggctaggactaatgattaggatgaacacttactttatttgctttagAAACCGGACCGTGATGACTGGGAGAGTGGGCTGAATGGAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGCTGCACAAACTGGCGACTCGACAAGAATGACCCCCATgtgagaaacagttgggtggaggagatgatttgctaggacctgggagacct Alignment from CESAR AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACT-GACAAGAATGATCCCCAC tgctggctaggactaatgattaggatgaacacttactttatttgctttagAAACCGGACCGTGATGACTGGGAGAGTGGGCTGAATGGAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGCTGCACAAACTGGCGACTCGACAAGAATGACCCCCATgtgagaaacagttgggtggaggagatgatttgctaggacctgggagacct Alignment from Spaln_aa2Genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACT-GACAAGAATGATCCCCAC tgctggctaggactaatgattaggatgaacacttactttatttgctttagAAACCGGACCGTGATGACTGGGAGAGTGGGCTGAATGGAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGCTGCACAAACTGGCGACTcGACAAGAATGACCCCCATgtgagaaacagttgggtggaggagatgatttgctaggacctgggagacct Alignment from Spaln_nt2Genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACT-GACAAGAATGATCCCCAC tgctggctaggactaatgattaggatgaacacttactttatttgctttagAAACCGGACCGTGATGACTGGGAGAGTGGGCTGAATGGAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGCTGCACAAACTGGCGACTCGACAAGAATGACCCCCATgtgagaaacagttgggtggaggagatgatttgctaggacctgggagacct Alignment from Pairagon AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACT-GACAAGAATGATCCCCAC tgctggctaggactaatgattaggatgaacacttactttatttgctttagAAACCGGACCGTGATGACTGGGAGAGTGGGCTGAATGGAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGCTGCACAAACTGGCGACTCGACAAGAATGACCCCCATgtgagaaacagttgggtggaggagatgatttgctaggacctgggagacct Alignment from Exonerate_protein2genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACT-GACAAGAATGATCCCCAC tgctggctaggactaatgattaggatgaacacttactttatttgctttagAAACCGGACCGTGATGACTGGGAGAGTGGGCTGAATGGAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGCTGCACAAACTGGCGACTCGACAAGAATGACCCCCATgtgagaaacagttgggtggaggagatgatttgctaggacctgggagacct Alignment from Exonerate_coding2genome AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCTACT-GACAAGAATGATCCCCAC tgctggctaggactaatgattaggatgaacacttactttatttgctttagAAACCGGACCGTGATGACTGGGAGAGTGGGCTGAATGGAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGCTGCACAAACTGGCGACTCGACAAGAATGACCCCCATgtgagaaacagttgggtggaggagatgatttgctaggacctgggagacct Alignment from GeneWise AAACCAGACCGTGATGACTGGGAGAGCGGGCTGAATGCAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTACTGGAACTGCACAAACTGGCT-ACTGACAAGAATGATCCCCAC tgctggctaggactaatgattaggatgaacacttactttatttgctttagAAACCGGACCGTGATGACTGGGAGAGTGGGCTGAATGGAATGGAGTGTGCACTGCACTTGGAAAAGAGTGTGAATCAGTCACTGCTGGAGCTGCACAAACTGGCGACTCGACAAGAATGACCCCCATgtgagaaacagttgggtggaggagatgatttgctaggacctgggagacct #### Gal_ID62_4 --> 2 - 1 Original Alignment gaAGTGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATA-ATGGAGTTTCTCAGTTTCTTGCACCTTAAAg aagggggtggtcaggaagtggcctgtaattttgtgtcttgaatatcctaggaAGTGTTGATGTGCCCCTGCCTGAGAGTATCATTGTTCGCACTATACATGGAGTTTCTCAGTTTCTTGCACCTTAAAggtaagtcaacaacttttctctaaagtatctacattgattggctgccttca Alignment from CESAR gaAGTGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATA-ATGGAGTTTCTCAGTTTCTTGCACCTTAAAg aagggggtggtcaggaagtggcctgtaattttgtgtcttgaatatcctaggaAGTGTTGATGTGCCCCTGCCTGAGAGTATCATTGTTCGCACTATACATGGAGTTTCTCAGTTTCTTGCACCTTAAAggtaagtcaacaacttttctctaaagtatctacattgattggctgccttca Alignment from Spaln_aa2Genome GAAGTGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATA-ATGGAGTTTCTCAGTTTCTTGCACCTTAAAG aagggggtggtcaggaagtggcctgtaattttgtgtcttgaatatcctagGAAGTGTTGATGTGCCCCTGCCTGAGAGTATCATTGTTCGCACTATAcATGGAGTTTCTCAGTTTCTTGCACCTTAAAGgtaagtcaacaacttttctctaaagtatctacattgattggctgccttca Alignment from Spaln_nt2Genome GAAGTGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATA-ATGGAGTTTCTCAGTTTCTTGCACCTTAAAG aagggggtggtcaggaagtggcctgtaattttgtgtcttgaatatcctagGAAGTGTTGATGTGCCCCTGCCTGAGAGTATCATTGTTCGCACTATACATGGAGTTTCTCAGTTTCTTGCACCTTAAAGgtaagtcaacaacttttctctaaagtatctacattgattggctgccttca Alignment from Pairagon GAAGTGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATA-ATGGAGTTTCTCAGTTTCTTGCACCTTAAAG aagggggtggtcaggaagtggcctgtaattttgtgtcttgaatatcctagGAAGTGTTGATGTGCCCCTGCCTGAGAGTATCATTGTTCGCACTATACATGGAGTTTCTCAGTTTCTTGCACCTTAAAGgtaagtcaacaacttttctctaaagtatctacattgattggctgccttca Alignment from Exonerate_protein2genome GAAGTGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATA-ATGGAGTTTCTCAGTTTCTTGCACCTTAAAG aagggggtggtcaggaagtggcctgtaattttgtgtcttgaatatcctagGAAGTGTTGATGTGCCCCTGCCTGAGAGTATCATTGTTCGCACTATACATGGAGTTTCTCAGTTTCTTGCACCTTAAAGgtaagtcaacaacttttctctaaagtatctacattgattggctgccttca Alignment from Exonerate_coding2genome GAAGTGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACTATA-ATGGAGTTTCTCAGTTTCTTGCACCTTAAAG aagggggtggtcaggaagtggcctgtaattttgtgtcttgaatatcctagGAAGTGTTGATGTGCCCCTGCCTGAGAGTATCATTGTTCGCACTATACATGGAGTTTCTCAGTTTCTTGCACCTTAAAGgtaagtcaacaacttttctctaaagtatctacattgattggctgccttca Alignment from GeneWise GAAGTGTTGATGTGCCCCTGCCTGAGAGCAACATTGTCCGCACT-ATAATGGAGTTTCTCAGTTTCTTGCACCTTAAAG aagggggtggtcaggaagtggcctgtaattttgtgtcttgaatatcctagGAAGTGTTGATGTGCCCCTGCCTGAGAGTATCATTGTTCGCACTATACATGGAGTTTCTCAGTTTCTTGCACCTTAAAGgtaagtcaacaacttttctctaaagtatctacattgattggctgccttca #### Ganab_ID2469_8 --> 0 - 1 Original Alignment CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAG-ACATTCAAAACACATTCTGACAGCAAGCCTTATg ggggagacatagctgaggtgcaagtgggaacatttgcttatctcttacagCCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAACACATTCAAAACACCTTCTGACAGCAAGCCTTATggtatggaattgggcaagaccaaagagtcgagatcttttctccttttccca Alignment from CESAR CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAG-ACATTCAAAACACATTCTGACAGCAAGCCTTATg ggggagacatagctgaggtgcaagtgggaacatttgcttatctcttacagCCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAACACATTCAAAACACCTTCTGACAGCAAGCCTTATggtatggaattgggcaagaccaaagagtcgttaacagaatttgtctttata Alignment from Spaln_aa2Genome CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAG-ACATTCAAAACACATTCTGACAGCAAGCCTTATG ggggagacatagctgaggtgcaagtgggaacatttgcttatctcttacagCCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAAcACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtatggaattgggcaagaccaaagagtcgagatcttttctccttttccca Alignment from Spaln_nt2Genome CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAG-ACATTCAAAACACATTCTGACAGCAAGCCTTATG ggggagacatagctgaggtgcaagtgggaacatttgcttatctcttacagCCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAACACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtatggaattgggcaagaccaaagagtcgagatcttttctccttttccca Alignment from Pairagon CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAG-ACATTCAAAACACATTCTGACAGCAAGCCTTATG ggggagacatagctgaggtgcaagtgggaacatttgcttatctcttacagCCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAACACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtatggaattgggcaagaccaaagagtcgagatcttttctccttttccca Alignment from Exonerate_protein2genome CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAG-ACATTCAAAACACATTCTGACAGCAAGCCTTATG ggggagacatagctgaggtgcaagtgggaacatttgcttatctcttacagCCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAACACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtatggaattgggcaagaccaaagagtcgagatcttttctccttttccca Alignment from Exonerate_coding2genome CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAG-ACATTCAAAACACATTCTGACAGCAAGCCTTATG ggggagacatagctgaggtgcaagtgggaacatttgcttatctcttacagCCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAACACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtatggaattgggcaagaccaaagagtcgagatcttttctccttttccca Alignment from GeneWise CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAG-ACATTCAAAACACATTCTGACAGCAAGCCTTAT--------------------------------------------------- ggggagacatagctgaggtgcaagtgggaacatttgcttatctcttacagCCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCAGGAGCCTGGGAGGAACACATTCAAAACACCTTCTGACAGCAAGCCTTATGGTATGGAATTGGGCAAGACCAAAGAGTCGAGATCTTTTCTCCTTTTCCCA #### Ganab_ID2470_9 --> 2 - 2 Original Alignment gcCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATG-GAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTga taaaaaattgggcaagaccaaagagtcgttaacagaatttgtctttataggtCCCATGTCTGTTGGTTTGGACTTTTCTCTGCCATGGATGCGAACATGCATACGGGATCCCTGAGCATGCTGACAGCTTGAGACTGAAGGTCACTgagtaaggccatgctaaatagggttaacaaaggtgatgaaaaaccaaagttt Alignment from CESAR gcCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATG-GAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTga tatggaattgggcaagaccaaagagtcgttaacagaatttgtctttataggtCCCATGTCTGTTGGTTTGGACTTTTCTCTGCCATGGATGCGAACATGCATACGGGATCCCTGAGCATGCTGACAGCTTGAGACTGAAGGTCACTgagtaaggccatgctaaatagggttaacaaaggtgatgaaaaaccaaagttt Alignment from Spaln_aa2Genome GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATG-GAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA taaaaaattgggcaagaccaaagagtcgttaacagaatttgtctttatagGTCCCATGTCTGTTGGTTTGGACTTTTCTCTGCCATGGATGcGAACATGCATACGGGATCCCTGAGCATGCTGACAGCTTGAGACTGAAGGTCACTGAgtaaggccatgctaaatagggttaacaaaggtgatgaaaaaccaaagttt Alignment from Spaln_nt2Genome GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATG-GAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA taaaaaattgggcaagaccaaagagtcgttaacagaatttgtctttatagGTCCCATGTCTGTTGGTTTGGACTTTTCTCTGCCATGGATGCGAACATGCATACGGGATCCCTGAGCATGCTGACAGCTTGAGACTGAAGGTCACTGAgtaaggccatgctaaatagggttaacaaaggtgatgaaaaaccaaagttt Alignment from Pairagon GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCAGGAATG-GAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA taaaaaattgggcaagaccaaagagtcgttaacagaatttgtctttatagGTCCCATGTCTGTTGGTTTGGACTTTTCTCTGCCATGGATGCGAACATGCATACGGGATCCCTGAGCATGCTGACAGCTTGAGACTGAAGGTCACTGAgtaaggccatgctaaatagggttaacaaaggtgatgaaaaaccaaagttt Alignment from Exonerate_protein2genome GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCA-GGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA taaaaaattgggcaagaccaaagagtcgttaacagaatttgtctttatagGTCCCATGTCTGTTGGTTTGGACTTTTCTCTGCCATGGATGCGAACATGCATACGGGATCCCTGAGCATGCTGACAGCTTGAGACTGAAGGTCACTGAgtaaggccatgctaaatagggttaacaaaggtgatgaaaaaccaaagttt Alignment from Exonerate_coding2genome GCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCA-GGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA taaaaaattgggcaagaccaaagagtcgttaacagaatttgtctttatagGTCCCATGTCTGTTGGTTTGGACTTTTCTCTGCCATGGATGCGAACATGCATACGGGATCCCTGAGCATGCTGACAGCTTGAGACTGAAGGTCACTGAgtaaggccatgctaaatagggttaacaaaggtgatgaaaaaccaaagttt Alignment from GeneWise -------------------------------------------------GGCCCCACGTCTGTAGGTTTGGACTTTTCTCTGCCA-GGAATGGAACATGTGTATGGGATCCCTGAGCATGCTGACAGCCTGAGACTGAAGGTCACTGA TAAAAAATTGGGCAAGACCAAAGAGTCGTTAACAGAATTTGTCTTTATAGGTCCCATGTCTGTTGGTTTGGACTTTTCTCTGCCATGGATGCGAACATGCATACGGGATCCCTGAGCATGCTGACAGCTTGAGACTGAAGGTCACTGAgtaaggccatgctaaatagggttaacaaaggtgatgaaaaaccaaagttt #### Ganab_ID2473_12 --> 2 - 0 Original Alignment ggACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGC-TGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG tacaaagttttacacttttaccagcctgcttagctcccgtcctctctcagggACCCAGGCATTGCCCCCACCCTCATCCCTTGGCTATCACCAAAGTCGCCTGGAACTACCGTGATGAGGCAGATATCTTGGAAGTGGGCCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGACATTGAACATGCTGATGGCAAAAGGTACTTCACCTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGCTTGATCACCTGGCTTCCAAGAGGCGGAAGgtaagcgggtgctgcagctgtgaaggtgccttttgtacagtgctggggat Alignment from CESAR ggACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGC-TGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG tacaaagttttacacttttaccagcctgcttagctcccgtcctctctcagggACCCAGGCATTGCCCCCACCCTCATCCCTTGGCTATCACCAAAGTCGCCTGGAACTACCGTGATGAGGCAGATATCTTGGAAGTGGGCCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGACATTGAACATGCTGATGGCAAAAGGTACTTCACCTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGCTTGATCACCTGGCTTCCAAGAGGCGGAAGgtaagcgggtgctgcagctgtgaaggtgccttttgtacagtgctggggat Alignment from Spaln_aa2Genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGC-TGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG tacaaagttttacacttttaccagcctgcttagctcccgtcctctctcagGGACCCAGGCATTGCCCCCACCCTCATCCCTTGGCTATCACCAAAGTCGCcTGGAACTACCGTGATGAGGCAGATATCTTGGAAGTGGGCCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGACATTGAACATGCTGATGGCAAAAGGTACTTCACCTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGCTTGATCACCTGGCTTCCAAGAGGCGGAAGgtaagcgggtgctgcagctgtgaaggtgccttttgtacagtgctggggat Alignment from Spaln_nt2Genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCG-CTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG tacaaagttttacacttttaccagcctgcttagctcccgtcctctctcagGGACCCAGGCATTGCCCCCACCCTCATCCCTTGGCTATCACCAAAGTCGCCTGGAACTACCGTGATGAGGCAGATATCTTGGAAGTGGGCCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGACATTGAACATGCTGATGGCAAAAGGTACTTCACCTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGCTTGATCACCTGGCTTCCAAGAGGCGGAAGgtaagcgggtgctgcagctgtgaaggtgccttttgtacagtgctggggat Alignment from Pairagon GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCG-CTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG tacaaagttttacacttttaccagcctgcttagctcccgtcctctctcagGGACCCAGGCATTGCCCCCACCCTCATCCCTTGGCTATCACCAAAGTCGCCTGGAACTACCGTGATGAGGCAGATATCTTGGAAGTGGGCCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGACATTGAACATGCTGATGGCAAAAGGTACTTCACCTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGCTTGATCACCTGGCTTCCAAGAGGCGGAAGgtaagcgggtgctgcagctgtgaaggtgccttttgtacagtgctggggat Alignment from Exonerate_protein2genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGC-TGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG tacaaagttttacacttttaccagcctgcttagctcccgtcctctctcagGGACCCAGGCATTGCCCCCACCCTCATCCCTTGGCTATCACCAAAGTCGCCTGGAACTACCGTGATGAGGCAGATATCTTGGAAGTGGGCCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGACATTGAACATGCTGATGGCAAAAGGTACTTCACCTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGCTTGATCACCTGGCTTCCAAGAGGCGGAAGgtaagcgggtgctgcagctgtgaaggtgccttttgtacagtgctggggat Alignment from Exonerate_coding2genome GGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGTCGC-TGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG tacaaagttttacacttttaccagcctgcttagctcccgtcctctctcagGGACCCAGGCATTGCCCCCACCCTCATCCCTTGGCTATCACCAAAGTCGCCTGGAACTACCGTGATGAGGCAGATATCTTGGAAGTGGGCCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGACATTGAACATGCTGATGGCAAAAGGTACTTCACCTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGCTTGATCACCTGGCTTCCAAGAGGCGGAAGgtaagcgggtgctgcagctgtgaaggtgccttttgtacagtgctggggat Alignment from GeneWise -------------------------------------------------GGGACCCAGGCATTGCCCCCACTCTTCTCCCTCGGCTATCACCAGAGT-CGCTGGAACTACCGGGATGAGGCTGATGTTTTGGAAGTGGATCAGGGTTTTGATGATCACAACATGCCTTGTGATGTCATTTGGTTGGACATTGAACATGCTGATGGCAAGCGGTACTTCACTTGGGACCCCACCCGATTTCCTCAGCCCCTCAATATGCTTGAGCACTTGGCTTCCAAGAGGCGGAAG TACAAAGTTTTACACTTTTACCAGCCTGCTTAGCTCCCGTCCTCTCTCAGGGACCCAGGCATTGCCCCCACCCTCATCCCTTGGCTATCACCAAAGTCGCCTGGAACTACCGTGATGAGGCAGATATCTTGGAAGTGGGCCAGGGTTTTGATGATCATAACATGCCCTGTGATGTTATATGGTTGGACATTGAACATGCTGATGGCAAAAGGTACTTCACCTGGGACCCCACCCGATTCCCCCAGCCACTCAATATGCTTGATCACCTGGCTTCCAAGAGGCGGAAGgtaagcgggtgctgcagctgtgaaggtgccttttgtacagtgctggggat #### Ganab_ID2477_16 --> 0 - 1 Original Alignment CACATGGCGACTGCTGAT-GGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTg accagaaggcagatgggatttgttcttcccttttttttttttttttgtagCACATGGCAACTGCTGATCGGGCTGATACAGTGCTCAGGGGGCATAGAGCGTTCCTTTGTGTTGAGTAGGGCTTTCTTCTCGGGTTCCCAGCGGTTTggtgagttgttgaaactagggctgtagcttcagtcacctagcctggttaaa Alignment from CESAR CACATGGCGACTGCTGAT-GGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTg accagaaggcagatgggatttgttcttcccttttttttttttttttgtagCACATGGCAACTGCTGATCGGGCTGATACAGTGCTCAGGGGGCATAGAGCGTTCCTTTGTGTTGAGTAGGGCTTTCTTCTCGGGTTCCCAGCGGTTTggtgagttgttgaaactagggctgtagcttcagtcacctagcctggttaaa Alignment from Spaln_aa2Genome CACATGGCGACTGCTGAT-GGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggcagatgggatttgttcttcccttttttttttttttttgtagCACATGGCAACTGCTGATcGGGCTGATACAGTGCTCAGGGGGCATAGAGCGTTCCTTTGTGTTGAGTAGGGCTTTCTTCTCGGGTTCCCAGCGGTTTGgtgagttgttgaaactagggctgtagcttcagtcacctagcctggttaaa Alignment from Spaln_nt2Genome CACATGGCGACTGCTGAT-GGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggcagatgggatttgttcttcccttttttttttttttttgtagCACATGGCAACTGCTGATCGGGCTGATACAGTGCTCAGGGGGCATAGAGCGTTCCTTTGTGTTGAGTAGGGCTTTCTTCTCGGGTTCCCAGCGGTTTGgtgagttgttgaaactagggctgtagcttcagtcacctagcctggttaaa Alignment from Pairagon CACATGGCGACTGCTGAT-GGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggcagatgggatttgttcttcccttttttttttttttttgtagCACATGGCAACTGCTGATCGGGCTGATACAGTGCTCAGGGGGCATAGAGCGTTCCTTTGTGTTGAGTAGGGCTTTCTTCTCGGGTTCCCAGCGGTTTGgtgagttgttgaaactagggctgtagcttcagtcacctagcctggttaaa Alignment from Exonerate_protein2genome CACATGGCGACTGCTGAT-GGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggcagatgggatttgttcttcccttttttttttttttttgtagCACATGGCAACTGCTGATCGGGCTGATACAGTGCTCAGGGGGCATAGAGCGTTCCTTTGTGTTGAGTAGGGCTTTCTTCTCGGGTTCCCAGCGGTTTGgtgagttgttgaaactagggctgtagcttcagtcacctagcctggttaaa Alignment from Exonerate_coding2genome CACATGGCGACTGCTGAT-GGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggcagatgggatttgttcttcccttttttttttttttttgtagCACATGGCAACTGCTGATCGGGCTGATACAGTGCTCAGGGGGCATAGAGCGTTCCTTTGTGTTGAGTAGGGCTTTCTTCTCGGGTTCCCAGCGGTTTGgtgagttgttgaaactagggctgtagcttcagtcacctagcctggttaaa Alignment from GeneWise CACATGGCGACTGCTGAT-GGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCAGGCTCCCAGCGCTTTG accagaaggcagatgggatttgttcttcccttttttttttttttttgtagCACATGGCAACTGCTGATCGGGCTGATACAGTGCTCAGGGGGCATAGAGCGTTCCTTTGTGTTGAGTAGGGCTTTCTTCTCGGGTTCCCAGCGGTTTGgtgagttgttgaaactagggctgtagcttcagtcacctagcctggttaaa #### Ganab_ID2482_21 --> 0 - 0 Original Alignment GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACC-TTGTATCTGCCAGTAACTTTGAGCAGT aaacatagatgccctatgtaccgtgtgagtgttttccatttctattttagGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCCTTGTATCTGCCAGTAACTTTGAGCAGTgtaatgatgactctctagccactatctctgtttgcttgttcactcctgga Alignment from CESAR GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACC-TTGTATCTGCCAGTAACTTTGAGCAGT aaacatagatgccctatgtaccgtgtgagtgttttccatttctattttagGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCCTTGTATCTGCCAGTAACTTTGAGCAGTgtaatgatgactctctagccactatctctgtttgcttgttcactcctgga Alignment from Spaln_aa2Genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTG-TATCTGCCAGTAACTTTGAGCAGT aaacatagatgccctatgtaccgtgtgagtgttttccatttctattttagGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCCTTgTATCTGCCAGTAACTTTGAGCAGTgtaatgatgactctctagccactatctctgtttgcttgttcactcctgga Alignment from Spaln_nt2Genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACC-TTGTATCTGCCAGTAACTTTGAGCAGT aaacatagatgccctatgtaccgtgtgagtgttttccatttctattttagGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCCTTGTATCTGCCAGTAACTTTGAGCAGTgtaatgatgactctctagccactatctctgtttgcttgttcactcctgga Alignment from Pairagon GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGA-CCTTGTATCTGCCAGTAACTTTGAGCAGT aaacatagatgccctatgtaccgtgtgagtgttttccatttctattttagGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCCTTGTATCTGCCAGTAACTTTGAGCAGTgtaatgatgactctctagccactatctctgtttgcttgttcactcctgga Alignment from Exonerate_protein2genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACC-TTGTATCTGCCAGTAACTTTGAGCAGT aaacatagatgccctatgtaccgtgtgagtgttttccatttctattttagGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCCTTGTATCTGCCAGTAACTTTGAGCAGTgtaatgatgactctctagccactatctctgtttgcttgttcactcctgga Alignment from Exonerate_coding2genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACC-TTGTATCTGCCAGTAACTTTGAGCAGT aaacatagatgccctatgtaccgtgtgagtgttttccatttctattttagGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCCTTGTATCTGCCAGTAACTTTGAGCAGTgtaatgatgactctctagccactatctctgtttgcttgttcactcctgga Alignment from GeneWise GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACC-TTGTATCTGCCAGTAACTTTGAGCAGT aaacatagatgccctatgtaccgtgtgagtgttttccatttctattttagGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAAACCCTTGTATCTGCCAGTAACTTTGAGCAGTgtaatgatgactctctagccactatctctgtttgcttgttcactcctgga #### Gbf1_ID9796_15 --> 2 - 1 Original Alignment ctGAGAGAGCAACCAGTGATGGG-AAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGg atcaccagccataagtttttgatcaatgcatggccttacccttcctgaagctGAGAGAGCAACCAGTGATGGGCAAATCCACAGGGGTGGCCTTGGATGCACGAGGCCTTCATTTTCCCAGCGGAGGGTGGTTGTCAACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCGGGTGACTCTAGCagtgagactgtccagtatattgtctctaactgagcctcccagtcaatgttt Alignment from CESAR ctGAGAGAGCAACCAGTGATGGG-AAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGg atcaccagccataagtttttgatcaatgcatggccttacccttcctgaagctGAGAGAGCAACCAGTGATGGGCAAATCCACAGGGGTGGCCTTGGATGCACGAGGCCTTCATTTTCCCAGCGGAGGGTGGTTGTCAACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCGGGTGACTCTAGCagtgagactgtccagtatattgtctctaactgagcctcccagtcaatgttt Alignment from Spaln_aa2Genome CTGAGAGAGCAACCAGTGAT-GGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccataagtttttgatcaatgcatggccttacccttcctgaagCTGAGAGAGCAACCAGTGATgGGCAAATCCACAGGGGTGGCCTTGGATGCACGAGGCCTTCATTTTCCCAGCGGAGGGTGGTTGTCAACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCGGGTGACTCTAGCAgtgagactgtccagtatattgtctctaactgagcctcccagtcaatgttt Alignment from Spaln_nt2Genome CTGAGAGAGCAACCAGTGAT-GGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccataagtttttgatcaatgcatggccttacccttcctgaagCTGAGAGAGCAACCAGTGATGGGCAAATCCACAGGGGTGGCCTTGGATGCACGAGGCCTTCATTTTCCCAGCGGAGGGTGGTTGTCAACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCGGGTGACTCTAGCAgtgagactgtccagtatattgtctctaactgagcctcccagtcaatgttt Alignment from Pairagon CTGAGAGAGCAACCAGTGATGGG-AAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccataagtttttgatcaatgcatggccttacccttcctgaagCTGAGAGAGCAACCAGTGATGGGCAAATCCACAGGGGTGGCCTTGGATGCACGAGGCCTTCATTTTCCCAGCGGAGGGTGGTTGTCAACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCGGGTGACTCTAGCAgtgagactgtccagtatattgtctctaactgagcctcccagtcaatgttt Alignment from Exonerate_protein2genome CTGAGAGAGCAACCAGTGAT-GGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccataagtttttgatcaatgcatggccttacccttcctgaagCTGAGAGAGCAACCAGTGATGGGCAAATCCACAGGGGTGGCCTTGGATGCACGAGGCCTTCATTTTCCCAGCGGAGGGTGGTTGTCAACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCGGGTGACTCTAGCAgtgagactgtccagtatattgtctctaactgagcctcccagtcaatgttt Alignment from Exonerate_coding2genome CTGAGAGAGCAACCAGTGAT-GGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccataagtttttgatcaatgcatggccttacccttcctgaagCTGAGAGAGCAACCAGTGATGGGCAAATCCACAGGGGTGGCCTTGGATGCACGAGGCCTTCATTTTCCCAGCGGAGGGTGGTTGTCAACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCGGGTGACTCTAGCAgtgagactgtccagtatattgtctctaactgagcctcccagtcaatgttt Alignment from GeneWise CTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTGACTCTGGGG atcaccagccataagtttttgatcaatgcatggccttacccttcctgaagctgagagAGCAACCAGTGATG------GGCAAATCCACAGGGGTGGCCTTGGATGCACGAGGCCTTCATTTTCCCAGCGGAGGGTGGTTGTCAACTGACCATGGAAAGCCAGGGTGCAGAGACCTAGAGGAAGCGGGTGACTCTAGCAgtgagactgtccagtatattgtctctaactgagcctcccagtcaatgttt #### Gbf1_ID9797_16 --> 2 - 0 Original Alignment ctGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAA-ATTAAAAACAAAAAAAAG gaatccctcatgttgagggttgtgtatttacatttccttttctcccacagctGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCATGGGAATTAATTGAACATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatatctcaactggttagtcccctctaaacttac Alignment from CESAR ctGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAA-ATTAAAAACAAAAAAAAG gaatccctcatgttgagggttgtgtatttacatttccttttctcccacagctGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCATGGGAATTAATTGAACATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatatctcaactggttagtcccctctaaacttac Alignment from Spaln_aa2Genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAA-ATTAAAAACAAAAAAAAG gaatccctcatgttgagggttgtgtatttacatttccttttctcccacagCTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCATGGGAATTAATTGAAcATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatatctcaactggttagtcccctctaaacttac Alignment from Spaln_nt2Genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAA-ATTAAAAACAAAAAAAAG gaatccctcatgttgagggttgtgtatttacatttccttttctcccacagCTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCATGGGAATTAATTGAACATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatatctcaactggttagtcccctctaaacttac Alignment from Pairagon CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAA-ATTAAAAACAAAAAAAAG gaatccctcatgttgagggttgtgtatttacatttccttttctcccacagCTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCATGGGAATTAATTGAACATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatatctcaactggttagtcccctctaaacttac Alignment from Exonerate_protein2genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAA-ATTAAAAACAAAAAAAAG gaatccctcatgttgagggttgtgtatttacatttccttttctcccacagCTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCATGGGAATTAATTGAACATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatatctcaactggttagtcccctctaaacttac Alignment from Exonerate_coding2genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAA-ATTAAAAACAAAAAAAAG gaatccctcatgttgagggttgtgtatttacatttccttttctcccacagCTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCATGGGAATTAATTGAACATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatatctcaactggttagtcccctctaaacttac Alignment from GeneWise CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTCTGCCAGATCCACGGGAACTAATTGAA-ATTAAAAACAAAAAAAAG gaatccctcatgttgagggttgtgtatttacatttccttttctcccacagCTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCCTGCCAGATCCATGGGAATTAATTGAACATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatatctcaactggttagtcccctctaaacttac #### Gbf1_ID9803_22 --> 1 - 0 Original Alignment gAAGTGTGCCATG-ATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctggtggatgttcactgggtgtttctttgatgcttctctgccaccaggAAGTGTGCCACGCATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtattttggaacaggaaaactagttagaggacaatgaacctcttcctcca Alignment from CESAR gAAGTGTGCCATG-ATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctggtggatgttcactgggtgtttctttgatgcttctctgccaccaggAAGTGTGCCACGCATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtattttggaacaggaaaactagttagaggacaatgaacctcttcctcca Alignment from Spaln_aa2Genome GAAGTGTGCCATG-ATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctggtggatgttcactgggtgtttctttgatgcttctctgccaccagGAAGTGTGCCACGcATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtattttggaacaggaaaactagttagaggacaatgaacctcttcctcca Alignment from Spaln_nt2Genome GAAGTGTGCCATG-ATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctggtggatgttcactgggtgtttctttgatgcttctctgccaccagGAAGTGTGCCACGCATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtattttggaacaggaaaactagttagaggacaatgaacctcttcctcca Alignment from Pairagon GAAGTGTGCCATG-ATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctggtggatgttcactgggtgtttctttgatgcttctctgccaccagGAAGTGTGCCACGCATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtattttggaacaggaaaactagttagaggacaatgaacctcttcctcca Alignment from Exonerate_protein2genome GAAGTGTGCC-ATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctggtggatgttcactgggtgtttctttgatgcttctctgccaccagGAAGTGTGCCACGCATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtattttggaacaggaaaactagttagaggacaatgaacctcttcctcca Alignment from Exonerate_coding2genome GAAGTGTGCC-ATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctggtggatgttcactgggtgtttctttgatgcttctctgccaccagGAAGTGTGCCACGCATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtattttggaacaggaaaactagttagaggacaatgaacctcttcctcca Alignment from GeneWise GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG gacctggtggatgttcactgggtgtttctttgatgcttctctgccaccaggaagT---GTGCCACGCATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtattttggaacaggaaaactagttagaggacaatgaacctcttcctcca #### Gbf1_ID9805_24 --> 0 - 2 Original Alignment GTAGAAGATTTTGTGGATCCCAAT-GGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACcg agtgcgctcaggactgagccattcgtcacttttccacttcctgtccacagGTAGAAGATTTTGTGGACCCCAATCGGCAAGATCTCTTTACAACGCGAGGAGACACCATCAAACcggtatgtgttgattaataattaaggcctagagaagtagttgtaataagttg Alignment from CESAR GTAGAAGATTTTGTGGATCCCAAT-GGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACcg agtgcgctcaggactgagccattcgtcacttttccacttcctgtccacagGTAGAAGATTTTGTGGACCCCAATCGGCAAGATCTCTTTACAACGCGAGGAGACACCATCAAACcggtatgtgttgattaataattaaggcctagagaagtagttgtaataagttg Alignment from Spaln_aa2Genome GTAGAAGATTTTGTGGATCCCAAT-GGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agtgcgctcaggactgagccattcgtcacttttccacttcctgtccacagGTAGAAGATTTTGTGGACCCCAATcGGCAAGATCTCTTTACAACGCGAGGAGACACCATCAAACCGgtatgtgttgattaataattaaggcctagagaagtagttgtaataagttg Alignment from Spaln_nt2Genome GTAGAAGATTTTGTGGATCCCAAT-GGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agtgcgctcaggactgagccattcgtcacttttccacttcctgtccacagGTAGAAGATTTTGTGGACCCCAATCGGCAAGATCTCTTTACAACGCGAGGAGACACCATCAAACCGgtatgtgttgattaataattaaggcctagagaagtagttgtaataagttg Alignment from Pairagon GTAGAAGATTTTGTGGATCCCAAT-GGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agtgcgctcaggactgagccattcgtcacttttccacttcctgtccacagGTAGAAGATTTTGTGGACCCCAATCGGCAAGATCTCTTTACAACGCGAGGAGACACCATCAAACCGgtatgtgttgattaataattaaggcctagagaagtagttgtaataagttg Alignment from Exonerate_protein2genome GTAGAAGATTTTGTGGATCCCAAT-GGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agtgcgctcaggactgagccattcgtcacttttccacttcctgtccacagGTAGAAGATTTTGTGGACCCCAATCGGCAAGATCTCTTTACAACGCGAGGAGACACCATCAAACCGgtatgtgttgattaataattaaggcctagagaagtagttgtaataagttg Alignment from Exonerate_coding2genome GTAGAAGATTTTGTGGATCCCAAT-GGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agtgcgctcaggactgagccattcgtcacttttccacttcctgtccacagGTAGAAGATTTTGTGGACCCCAATCGGCAAGATCTCTTTACAACGCGAGGAGACACCATCAAACCGgtatgtgttgattaataattaaggcctagagaagtagttgtaataagttg Alignment from GeneWise GTAGAAGATTTTGTGGATCCCAAT-GGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agtgcgctcaggactgagccattcgtcacttttccacttcctgtccacagGTAGAAGATTTTGTGGACCCCAATCGGCAAGATCTCTTTACAACGCGAGGAGACACCATCAAACCGgtatgtgttgattaataattaaggcctagagaagtagttgtaataagttg #### Gbf1_ID9808_27 --> 0 - 2 Original Alignment GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGAC-GAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACag aagagcacttgaatcctatctccttactggtattctttctcttctttcagGCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGATCGAAGAAGATGCCGCTTTCTGTCTTGAAATGCTGCTAAGGATTGTGCTGGAGAACaggtgggataaggcaggcctgcagaacccagaaggccctatactaggttccc Alignment from CESAR GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGAC-GAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACag aagagcacttgaatcctatctccttactggtattctttctcttctttcagGCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGATCGAAGAAGATGCCGCTTTCTGTCTTGAAATGCTGCTAAGGATTGTGCTGGAGAACaggtgggataaggcaggcctgcagaacccagaaggccctatactaggttccc Alignment from Spaln_aa2Genome GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGAC-GAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG aagagcacttgaatcctatctccttactggtattctttctcttctttcagGCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGATcGAAGAAGATGCCGCTTTCTGTCTTGAAATGCTGCTAAGGATTGTGCTGGAGAACAGgtgggataaggcaggcctgcagaacccagaaggccctatactaggttccc Alignment from Spaln_nt2Genome GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGA-CGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG aagagcacttgaatcctatctccttactggtattctttctcttctttcagGCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGATCGAAGAAGATGCCGCTTTCTGTCTTGAAATGCTGCTAAGGATTGTGCTGGAGAACAGgtgggataaggcaggcctgcagaacccagaaggccctatactaggttccc Alignment from Pairagon GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGA-CGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG aagagcacttgaatcctatctccttactggtattctttctcttctttcagGCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGATCGAAGAAGATGCCGCTTTCTGTCTTGAAATGCTGCTAAGGATTGTGCTGGAGAACAGgtgggataaggcaggcctgcagaacccagaaggccctatactaggttccc Alignment from Exonerate_protein2genome GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGAC-GAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG aagagcacttgaatcctatctccttactggtattctttctcttctttcagGCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGATCGAAGAAGATGCCGCTTTCTGTCTTGAAATGCTGCTAAGGATTGTGCTGGAGAACAGgtgggataaggcaggcctgcagaacccagaaggccctatactaggttccc Alignment from Exonerate_coding2genome GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGAC-GAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG aagagcacttgaatcctatctccttactggtattctttctcttctttcagGCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGATCGAAGAAGATGCCGCTTTCTGTCTTGAAATGCTGCTAAGGATTGTGCTGGAGAACAGgtgggataaggcaggcctgcagaacccagaaggccctatactaggttccc Alignment from GeneWise GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGAC-GAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG aagagcacttgaatcctatctccttactggtattctttctcttctttcagGCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGATCGAAGAAGATGCCGCTTTCTGTCTTGAAATGCTGCTAAGGATTGTGCTGGAGAACAGgtgggataaggcaggcctgcagaacccagaaggccctatactaggttccc #### Gbf1_ID9816_35 --> 0 - 0 Original Alignment GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACC-CGGATGCGGGCTTCCACACTGCTCTCAAAG cccatgcccaactggctgggttaatgtgttttttttttttgtatatatagGTGCTGTTTCCCCTCCTTTCCAAGCTCTTGGAAAATATCAGCCCTGCAGATGTGGGTGGGATGGAAGAGACCCCGGATGCGGGCTTCCACGCTACTCTCAAAGgtgaggcttttccggtttgcacccatctctctacctcattccatctccca Alignment from CESAR GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACC-CGGATGCGGGCTTCCACACTGCTCTCAAAG cccatgcccaactggctgggttaatgtgttttttttttttgtatatatagGTGCTGTTTCCCCTCCTTTCCAAGCTCTTGGAAAATATCAGCCCTGCAGATGTGGGTGGGATGGAAGAGACCCCGGATGCGGGCTTCCACGCTACTCTCAAAGgtgaggcttttccggtttgcacccatctctctacctcattccatctccca Alignment from Spaln_aa2Genome GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACC-CGGATGCGGGCTTCCACACTGCTCTCAAAG cccatgcccaactggctgggttaatgtgttttttttttttgtatatatagGTGCTGTTTCCCCTCCTTTCCAAGCTCTTGGAAAATATCAGCCCTGCAGATGTGGGTGGGATGGAAGAGACCcCGGATGCGGGCTTCCACGCTACTCTCAAAGgtgaggcttttccggtttgcacccatctctctacctcattccatctccca Alignment from Spaln_nt2Genome GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACC-CGGATGCGGGCTTCCACACTGCTCTCAAAG cccatgcccaactggctgggttaatgtgttttttttttttgtatatatagGTGCTGTTTCCCCTCCTTTCCAAGCTCTTGGAAAATATCAGCCCTGCAGATGTGGGTGGGATGGAAGAGACCCCGGATGCGGGCTTCCACGCTACTCTCAAAGgtgaggcttttccggtttgcacccatctctctacctcattccatctccca Alignment from Pairagon GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGA-CCCGGATGCGGGCTTCCACACTGCTCTCAAAG cccatgcccaactggctgggttaatgtgttttttttttttgtatatatagGTGCTGTTTCCCCTCCTTTCCAAGCTCTTGGAAAATATCAGCCCTGCAGATGTGGGTGGGATGGAAGAGACCCCGGATGCGGGCTTCCACGCTACTCTCAAAGgtgaggcttttccggtttgcacccatctctctacctcattccatctccca Alignment from Exonerate_protein2genome GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACC-CGGATGCGGGCTTCCACACTGCTCTCAAAG cccatgcccaactggctgggttaatgtgttttttttttttgtatatatagGTGCTGTTTCCCCTCCTTTCCAAGCTCTTGGAAAATATCAGCCCTGCAGATGTGGGTGGGATGGAAGAGACCCCGGATGCGGGCTTCCACGCTACTCTCAAAGgtgaggcttttccggtttgcacccatctctctacctcattccatctccca Alignment from Exonerate_coding2genome GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACC-CGGATGCGGGCTTCCACACTGCTCTCAAAG cccatgcccaactggctgggttaatgtgttttttttttttgtatatatagGTGCTGTTTCCCCTCCTTTCCAAGCTCTTGGAAAATATCAGCCCTGCAGATGTGGGTGGGATGGAAGAGACCCCGGATGCGGGCTTCCACGCTACTCTCAAAGgtgaggcttttccggtttgcacccatctctctacctcattccatctccca Alignment from GeneWise GTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAG-ACCCGGATGCGGGCTTCCACACTGCTCTCAAAG cccatgcccaactggctgggttaatgtgttttttttttttgtatatatagGTGCTGTTTCCCCTCCTTTCCAAGCTCTTGGAAAATATCAGCCCTGCAGATGTGGGTGGGATGGAAGAGACCCCGGATGCGGGCTTCCACGCTACTCTCAAAGgtgaggcttttccggtttgcacccatctctctacctcattccatctccca #### Gpam_ID11538_11 --> 0 - 2 Original Alignment GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCT-GCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAag attccatattttcaagtaaaggattatttctcctgtgttgtaccttctagGAATACCTAGAAGGCCAGGGTCAGAAGCCTGTGTCTCGCCCCCCTTTCTCTGGAGCAGGCACTATTACCAGCAATCCTTCCCTCAaggtgagggtgagtacctgtagggctcggctatcccctaactcatgtacttg Alignment from CESAR GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCT-GCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAag attccatattttcaagtaaaggattatttctcctgtgttgtaccttctagGAATACCTAGAAGGCCAGGGTCAGAAGCCTGTGTCTCGCCCCCCTTTCTCTGGAGCAGGCACTATTACCAGCAATCCTTCCCTCAaggtgagggtgagtacctgtagggctcggctatcccctaactcatgtacttg Alignment from Spaln_aa2Genome GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCT-GCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG attccatattttcaagtaaaggattatttctcctgtgttgtaccttctagGAATACCTAGAAGGCCAGGGTCAGAAGCCTGTGTCTcGCCCCCCTTTCTCTGGAGCAGGCACTATTACCAGCAATCCTTCCCTCAAGgtgagggtgagtacctgtagggctcggctatcccctaactcatgtacttg Alignment from Spaln_nt2Genome GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCT-GCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG attccatattttcaagtaaaggattatttctcctgtgttgtaccttctagGAATACCTAGAAGGCCAGGGTCAGAAGCCTGTGTCTCGCCCCCCTTTCTCTGGAGCAGGCACTATTACCAGCAATCCTTCCCTCAAGgtgagggtgagtacctgtagggctcggctatcccctaactcatgtacttg Alignment from Pairagon GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCT-GCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG attccatattttcaagtaaaggattatttctcctgtgttgtaccttctagGAATACCTAGAAGGCCAGGGTCAGAAGCCTGTGTCTCGCCCCCCTTTCTCTGGAGCAGGCACTATTACCAGCAATCCTTCCCTCAAGgtgagggtgagtacctgtagggctcggctatcccctaactcatgtacttg Alignment from Exonerate_protein2genome GAATATTTAGAAGGCCAGAGTCAGAAACCTGTATCT-GCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG attccatattttcaagtaaaggattatttctcctgtgttgtaccttctagGAATACCTAGAAGGCCAGGGTCAGAAGCCTGTGTCTCGCCCCCCTTTCTCTGGAGCAGGCACTATTACCAGCAATCCTTCCCTCAAGgtgagggtgagtacctgtagggctcggctatcccctaactcatgtacttg Alignment from Exonerate_coding2genome GAATATTTAGAAGGCCAGAGTCAGAAACCT--GTATCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG attccatattttcaagtaaaggattatttctcctgtgttgtaccttctagGAATACCTAGAAGGCCAGGGTCAGAAGCCTGTGTCTCG-CCCCCCTTTCTCTGGAGCAGGCACTATTACCAGCAATCCTTCCCTCAAGgtgagggtgagtacctgtagggctcggctatcccctaactcatgtacttg Alignment from GeneWise GAATATTTAGAAGGCCAGAGTCAGAAACCTGTA-TCTGCCCCCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAG attccatattttcaagtaaaggattatttctcctgtgttgtaccttctagGAATACCTAGAAGGCCAGGGTCAGAAGCCTGTGTCTCGCCCCCCTTTCTCTGGAGCAGGCACTATTACCAGCAATCCTTCCCTCAAGgtgagggtgagtacctgtagggctcggctatcccctaactcatgtacttg #### Gpr137_ID1885_6 --> 0 - 2 Original Alignment AGCACCAGTCGAATCCTCAATGGGCAGGTT-TTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCag cagttgcagcagaagaacagtgctacagttggttttgttttctcattcagAGCACCAGTCAAATCCTCAATGGGCAGGTTCTTTGGCTCCCGATCCTACTTCTTTGACAGGGCTGGACACTGTGAGGATGATGGCTGCTCCTGGGAGCATAGCCGGAGCGAGAGCACTaggtgagatccttgacagcactggtcactgtgtggatgctcctgggaacata Alignment from CESAR AGCACCAGTCGAATCCTCAATGGGCAGGTT-TTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCag cagttgcagcagaagaacagtgctacagttggttttgttttctcattcagAGCACCAGTCAAATCCTCAATGGGCAGGTTCTTTGGCTCCCGATCCTACTTCTTTGACAGGGCTGGACACTGTGAGGATGATGGCTGCTCCTGGGAGCATAGCCGGAGCGAGAGCACTaggtgagatccttgacagcactggtcactgtgtggatgctcctgggaacata Alignment from Spaln_aa2Genome AGCACCAGTCGAATCCTCAATGGGCAGGTT-TTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG cagttgcagcagaagaacagtgctacagttggttttgttttctcattcagAGCACCAGTCAAATCCTCAATGGGCAGGTTcTTTGGCTCCCGATCCTACTTCTTTGACAGGGCTGGACACTGTGAGGATGATGGCTGCTCCTGGGAGCATAGCCGGAGCGAGAGCACTAGgtgagatccttgacagcactggtcactgtgtggatgctcctgggaacata Alignment from Spaln_nt2Genome AGCACCAGTCGAATCCTCAATGGGCAGGTT-TTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG cagttgcagcagaagaacagtgctacagttggttttgttttctcattcagAGCACCAGTCAAATCCTCAATGGGCAGGTTCTTTGGCTCCCGATCCTACTTCTTTGACAGGGCTGGACACTGTGAGGATGATGGCTGCTCCTGGGAGCATAGCCGGAGCGAGAGCACTAGgtgagatccttgacagcactggtcactgtgtggatgctcctgggaacata Alignment from Pairagon AGCACCAGTCGAATCCTCAATGGGCAGGTT-TTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG cagttgcagcagaagaacagtgctacagttggttttgttttctcattcagAGCACCAGTCAAATCCTCAATGGGCAGGTTCTTTGGCTCCCGATCCTACTTCTTTGACAGGGCTGGACACTGTGAGGATGATGGCTGCTCCTGGGAGCATAGCCGGAGCGAGAGCACTAGgtgagatccttgacagcactggtcactgtgtggatgctcctgggaacata Alignment from Exonerate_protein2genome AGCACCAGTCGAATCCTCAATGGGCAGGTT-TTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG cagttgcagcagaagaacagtgctacagttggttttgttttctcattcagAGCACCAGTCAAATCCTCAATGGGCAGGTTCTTTGGCTCCCGATCCTACTTCTTTGACAGGGCTGGACACTGTGAGGATGATGGCTGCTCCTGGGAGCATAGCCGGAGCGAGAGCACTAGgtgagatccttgacagcactggtcactgtgtggatgctcctgggaacata Alignment from Exonerate_coding2genome AGCACCAGTCGAATCCTCAATGGGCAGGTT-TTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG cagttgcagcagaagaacagtgctacagttggttttgttttctcattcagAGCACCAGTCAAATCCTCAATGGGCAGGTTCTTTGGCTCCCGATCCTACTTCTTTGACAGGGCTGGACACTGTGAGGATGATGGCTGCTCCTGGGAGCATAGCCGGAGCGAGAGCACTAGgtgagatccttgacagcactggtcactgtgtggatgctcctgggaacata Alignment from GeneWise --ACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG cagttgcagcagaagaacagtgctacagttggttttgttttctcattcagagCACCAGTCAAATCCTCAATGGGCAGGTTCTTTGGCTCCCGATCCTACTTCTTTGACAGGGCTGGACACTGTGAGGATGATGGCTGCTCCTGGGAGCATAGCCGGAGCGAGAGCACTAGgtgagatccttgacagcactggtcactgtgtggatgctcctgggaacata #### Gpr137_ID1886_5 --> 0 - 0 Original Alignment GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACC-ACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG tttgccattagcttctgtattgacaaactctgaaaccaaacctacttcagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTGGTGTTTGGTCTCATTCTC---TTTTGGGAACTGCTGCCCACCCACGTTGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtaatgacctcttgccacgacatgctaactcctctccatgtaatatatgg Alignment from CESAR GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACC-ACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG tttgccattagcttctgtattgacaaactctgaaaccaaacctacttcagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTGGTGTTTGGTCTCATTCTCTTT---TGGGAACTGCTGCCCACCCACGTTGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtaatgacctcttgccacgacatgctaactcctctccatgtaatatatgg Alignment from Spaln_aa2Genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACC-ACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG tttgccattagcttctgtattgacaaactctgaaaccaaacctacttcagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTGGTGTTTGGTCTCATTCTCTTT---TGGGAACTGCTGCCCACCcACGTTGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtaatgacctcttgccacgacatgctaactcctctccatgtaatatatgg Alignment from Spaln_nt2Genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACC-ACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG tttgccattagcttctgtattgacaaactctgaaaccaaacctacttcagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTGGTGTTTGGTCTCATTCTCT---TTTGGGAACTGCTGCCCACCCACGTTGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtaatgacctcttgccacgacatgctaactcctctccatgtaatatatgg Alignment from Pairagon GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCA-CCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG tttgccattagcttctgtattgacaaactctgaaaccaaacctacttcagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTGGTGTTTGGTCTCATTCTCT---TTTGGGAACTGCTGCCCACCCACGTTGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtaatgacctcttgccacgacatgctaactcctctccatgtaatatatgg Alignment from Exonerate_protein2genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACC-ACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG tttgccattagcttctgtattgacaaactctgaaaccaaacctacttcagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTGGTGTTTGGTCTCATTCTCTTT---TGGGAACTGCTGCCCACCCACGTTGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtaatgacctcttgccacgacatgctaactcctctccatgtaatatatgg Alignment from Exonerate_coding2genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACC-ACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG tttgccattagcttctgtattgacaaactctgaaaccaaacctacttcagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTGGTGTTTGGTCTCATTCTCTTT---TGGGAACTGCTGCCCACCCACGTTGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtaatgacctcttgccacgacatgctaactcctctccatgtaatatatgg Alignment from GeneWise GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACC-ACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG tttgccattagcttctgtattgacaaactctgaaaccaaacctacttcagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTGGTGTTTGGTCTCATTCTCTTT---TGGGAACTGCTGCCCACCCACGTTGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtaatgacctcttgccacgacatgctaactcctctccatgtaatatatgg #### Gpr137_ID1887_4 --> 0 - 0 Original Alignment GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCT-CTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tgtagaggaatctaggacccctcctccccacctacttcttctccaaacagGGGACAAGTGTATGTCAGGTGGCTGCAATAGGG---GCCATGGTCCTGCTCTATGCCAGCCGGGCCTGCTATAACCTGGCAGCCCCTGGCCTTGGCACCTCGGAGCCGGCTAGATGCCTTCGATTATGACTGGTATAATGTATCAGACCAGgtgagcactatacagtttatttctggctgaccaaggctttgccattagct Alignment from CESAR GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCT-CTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tgtagaggaatctaggacccctcctccccacctacttcttctccaaacagGGGACAAGTGTATGTCAGGTGGCTGCAATAGGG---GCCATGGTCCTGCTCTATGCCAGCCGGGCCTGCTATAACCTGGCAGCCCCTGGCCTTGGCACCTCGGAGCCGGCTAGATGCCTTCGATTATGACTGGTATAATGTATCAGACCAGgtgagcactatacagtttatttctggctgaccaaggctttgccattagct Alignment from Spaln_aa2Genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCT-CTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tgtagaggaatctaggacccctcctccccacctacttcttctccaaacagGGGACAAGTGTATGTCAGGTGGCTGCAATA---GGGGCCATGGTCCTGCTCTATGCCAGCCGGGCCTGCTATAACCTGGCAGCCcCTGGCCTTGGCACCTCGGAGCCGGCTAGATGCCTTCGATTATGACTGGTATAATGTATCAGACCAGgtgagcactatacagtttatttctggctgaccaaggctttgccattagct Alignment from Spaln_nt2Genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTC-TGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tgtagaggaatctaggacccctcctccccacctacttcttctccaaacagGGGACAAGTGTATGTCAGGTGGCTGCAATAGGG---GCCATGGTCCTGCTCTATGCCAGCCGGGCCTGCTATAACCTGGCAGCCCCTGGCCTTGGCACCTCGGAGCCGGCTAGATGCCTTCGATTATGACTGGTATAATGTATCAGACCAGgtgagcactatacagtttatttctggctgaccaaggctttgccattagct Alignment from Pairagon GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAG-CTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tgtagaggaatctaggacccctcctccccacctacttcttctccaaacagGGGACAAGTGTATGTCAGGTGGCTGCAATAGGG---GCCATGGTCCTGCTCTATGCCAGCCGGGCCTGCTATAACCTGGCAGCCCCTGGCCTTGGCACCTCGGAGCCGGCTAGATGCCTTCGATTATGACTGGTATAATGTATCAGACCAGgtgagcactatacagtttatttctggctgaccaaggctttgccattagct Alignment from Exonerate_protein2genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCT-CTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tgtagaggaatctaggacccctcctccccacctacttcttctccaaacagGGGACAAGTGTATGTCAGGTGGCTGCAATA---GGGGCCATGGTCCTGCTCTATGCCAGCCGGGCCTGCTATAACCTGGCAGCCCCTGGCCTTGGCACCTCGGAGCCGGCTAGATGCCTTCGATTATGACTGGTATAATGTATCAGACCAGgtgagcactatacagtttatttctggctgaccaaggctttgccattagct Alignment from Exonerate_coding2genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCT-CTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tgtagaggaatctaggacccctcctccccacctacttcttctccaaacagGGGACAAGTGTATGTCAGGTGGCTGCAATA---GGGGCCATGGTCCTGCTCTATGCCAGCCGGGCCTGCTATAACCTGGCAGCCCCTGGCCTTGGCACCTCGGAGCCGGCTAGATGCCTTCGATTATGACTGGTATAATGTATCAGACCAGgtgagcactatacagtttatttctggctgaccaaggctttgccattagct Alignment from GeneWise GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCA-GCTCTGGCCTTGGCCCCTCGGAGCCGGCTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tgtagaggaatctaggacccctcctccccacctacttcttctccaaacagGGGACAAGTGTATGTCAGGTGGCTGCAATAGGG---GCCATGGTCCTGCTCTATGCCAGCCGGGCCTGCTATAACCTGGCAGCCCCTGGCCTTGGCACCTCGGAGCCGGCTAGATGCCTTCGATTATGACTGGTATAATGTATCAGACCAGgtgagcactatacagtttatttctggctgaccaaggctttgccattagct #### Gpr137_ID1889_2 --> 0 - 2 Original Alignment GTGGTGTTCAAGGCCAAG-GCGAAGCGTCGGCCAGAGATGAGCCGAGGCtt tagaagggtaatctcacaggtccaaagatgcctctttgctctttccttagGTGGTATTCAAGGCCAAACGCTAGGCGTCGACCAGCAATGAGCCGAGGGctgtaggaacaatagctcattggcagtgagtaagcccatggctgagataggg Alignment from CESAR GTGGTGTTCAAGGCCAAG-GCGAAGCGTCGGCCAGAGATGAGCCGAGGCtt tagaagggtaatctcacaggtccaaagatgcctctttgctctttccttagGTGGTATTCAAGGCCAAACGCTAGGCGTCGACCAGCAATGAGCCGAGGGctgtaggaacaatagctcattggcagtgagtaagcccatggctgagataggg Alignment from Spaln_aa2Genome GTGGTGTTCAAGGCCAAG-GCGAAGCGTCGGCCAGAGATGAGCCGAGGCTT tagaagggtaatctcacaggtccaaagatgcctctttgctctttccttagGTGGTATTCAAGGCCAAAcGCTAGGCGTCGACCAGCAATGAGCCGAGGGCTgtaggaacaatagctcattggcagtgagtaagcccatggctgagataggg Alignment from Spaln_nt2Genome GTGGTGTTCAAGGCCAAG-GCGAAGCGTCGGCCAGAGATGAGCCGAGGCTT tagaagggtaatctcacaggtccaaagatgcctctttgctctttccttagGTGGTATTCAAGGCCAAACGCTAGGCGTCGACCAGCAATGAGCCGAGGGCTgtaggaacaatagctcattggcagtgagtaagcccatggctgagataggg Alignment from Pairagon GTGGTGTTCAAGGCCAAG-GCGAAGCGTCGGCCAGAGATGAGCCGAGGCTT tagaagggtaatctcacaggtccaaagatgcctctttgctctttccttagGTGGTATTCAAGGCCAAACGCTAGGCGTCGACCAGCAATGAGCCGAGGGCTgtaggaacaatagctcattggcagtgagtaagcccatggctgagataggg Alignment from Exonerate_protein2genome GTGGTGTTCAAGGCCAAG-GCGAAGCGTCGGCCAGAGATGAGCCGAGGCTT tagaagggtaatctcacaggtccaaagatgcctctttgctctttccttagGTGGTATTCAAGGCCAAACGCTAGGCGTCGACCAGCAATGAGCCGAGGGCTgtaggaacaatagctcattggcagtgagtaagcccatggctgagataggg Alignment from Exonerate_coding2genome GGCCAGAGATGAGCCGAGG TAGAAGGGTAATCTCACAGgtccaaagatgcctctttgctctttccttaggtggtattcaaggccaaacgctaggcgtcgaccagcaatgagccgagggctgtaggaacaatagctcattggcagtgagtaagcccatggctgagataggg Alignment from GeneWise tagaagggtaatctcacaggtccaaagatgcctctttgctctttccttaggtggtattcaaggccaaacgctaggcgtcgaccagcaatgagccgagggctgtaggaacaatagctcattggcagtgagtaagcccatggctgagataggg #### Hnrnpul2_ID2399_3 --> 1 - 1 Original Alignment cTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTT-GTGAACCTGGACACGt ggataagttctaattataacatatttgtagagtcatctgttctcctgcagcTCGAAGTCCCCCTCACCTCCAGAGGAAGAAGCTAAAGATGAGGAGGAGGCCCAGTCACTTCGTCAACCTGGACACAtgtaaggggaatgcgtggaatggcttacttttacagatagaacattgttct Alignment from CESAR cTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTT-GTGAACCTGGACACGt ggataagttctaattataacatatttgtagagtcatctgttctcctgcagcTCGAAGTCCCCCTCACCTCCAGAGGAAGAAGCTAAAGATGAGGAGGAGGCCCAGTCACTTCGTCAACCTGGACACAtgtaaggggaatgcgtggaatggcttacttttacagatagaacattgttct Alignment from Spaln_aa2Genome CTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTT-GTGAACCTGGACACGT ggataagttctaattataacatatttgtagagtcatctgttctcctgcagCTCGAAGTCCCCCTCACCTCCAGAGGAAGAAGCTAAAGATGAGGAGGAGGCCCAGTCACTTcGTCAACCTGGACACATgtaaggggaatgcgtggaatggcttacttttacagatagaacattgttct Alignment from Spaln_nt2Genome CTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTT-GTGAACCTGGACACGT ggataagttctaattataacatatttgtagagtcatctgttctcctgcagCTCGAAGTCCCCCTCACCTCCAGAGGAAGAAGCTAAAGATGAGGAGGAGGCCCAGTCACTTCGTCAACCTGGACACATgtaaggggaatgcgtggaatggcttacttttacagatagaacattgttct Alignment from Pairagon CTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTT-GTGAACCTGGACACGT ggataagttctaattataacatatttgtagagtcatctgttctcctgcagCTCGAAGTCCCCCTCACCTCCAGAGGAAGAAGCTAAAGATGAGGAGGAGGCCCAGTCACTTCGTCAACCTGGACACATgtaaggggaatgcgtggaatggcttacttttacagatagaacattgttct Alignment from Exonerate_protein2genome CTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTT-GTGAACCTGGACACGT ggataagttctaattataacatatttgtagagtcatctgttctcctgcagCTCGAAGTCCCCCTCACCTCCAGAGGAAGAAGCTAAAGATGAGGAGGAGGCCCAGTCACTTCGTCAACCTGGACACATgtaaggggaatgcgtggaatggcttacttttacagatagaacattgttct Alignment from Exonerate_coding2genome CTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTT-GTGAACCTGGACACGT ggataagttctaattataacatatttgtagagtcatctgttctcctgcagCTCGAAGTCCCCCTCACCTCCAGAGGAAGAAGCTAAAGATGAGGAGGAGGCCCAGTCACTTCGTCAACCTGGACACATgtaaggggaatgcgtggaatggcttacttttacagatagaacattgttct Alignment from GeneWise CTCAAAGTCCCCACCACCTCCAGAAGAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTTG ggataagttctaattataacatatttgtagagtcatctgttctcctgcagCTCGAAGTCCCCCTCACCTCCAGAGGAAGAAGCTAAAGATGAGGAGGAGGCCCAGTCACTTCgtcaacctggacacatgtaaggggaatgcgtggaatggcttacttttacagatagaacattgttct #### Hnrnpul2_ID2400_4 --> 2 - 0 Original Alignment atACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCA-AGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactctttggtgctgaatgttgtagtgagcccctcttctctgtcttgtagatACATCAGATCTTCACTTCCAAATTAGCAAAGACCGTTATGGAGGCCAGCCACTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCACAGAAGTACCTATGGAGTAACAAAGGGAAAAGTATGCTTCGAAGCTAAGgtgagtcattaatttagaatgggacaaagtatactgtctaatttttcact Alignment from CESAR atACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCA-AGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactctttggtgctgaatgttgtagtgagcccctcttctctgtcttgtagatACATCAGATCTTCACTTCCAAATTAGCAAAGACCGTTATGGAGGCCAGCCACTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCACAGAAGTACCTATGGAGTAACAAAGGGAAAAGTATGCTTCGAAGCTAAGgtgagtcattaatttagaatgggacaaagtatactgtctaatttttcact Alignment from Spaln_aa2Genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCA-AGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactctttggtgctgaatgttgtagtgagcccctcttctctgtcttgtagATACATCAGATCTTCACTTCCAAATTAGCAAAGACCGTTATGGAGGCCAGCCACTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCAcAGAAGTACCTATGGAGTAACAAAGGGAAAAGTATGCTTCGAAGCTAAGgtgagtcattaatttagaatgggacaaagtatactgtctaatttttcact Alignment from Spaln_nt2Genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCA-AGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactctttggtgctgaatgttgtagtgagcccctcttctctgtcttgtagATACATCAGATCTTCACTTCCAAATTAGCAAAGACCGTTATGGAGGCCAGCCACTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCACAGAAGTACCTATGGAGTAACAAAGGGAAAAGTATGCTTCGAAGCTAAGgtgagtcattaatttagaatgggacaaagtatactgtctaatttttcact Alignment from Pairagon ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCA-AGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactctttggtgctgaatgttgtagtgagcccctcttctctgtcttgtagATACATCAGATCTTCACTTCCAAATTAGCAAAGACCGTTATGGAGGCCAGCCACTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCACAGAAGTACCTATGGAGTAACAAAGGGAAAAGTATGCTTCGAAGCTAAGgtgagtcattaatttagaatgggacaaagtatactgtctaatttttcact Alignment from Exonerate_protein2genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCA-AGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactctttggtgctgaatgttgtagtgagcccctcttctctgtcttgtagATACATCAGATCTTCACTTCCAAATTAGCAAAGACCGTTATGGAGGCCAGCCACTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCACAGAAGTACCTATGGAGTAACAAAGGGAAAAGTATGCTTCGAAGCTAAGgtgagtcattaatttagaatgggacaaagtatactgtctaatttttcact Alignment from Exonerate_coding2genome ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCA-AGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactctttggtgctgaatgttgtagtgagcccctcttctctgtcttgtagATACATCAGATCTTCACTTCCAAATTAGCAAAGACCGTTATGGAGGCCAGCCACTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCACAGAAGTACCTATGGAGTAACAAAGGGAAAAGTATGCTTCGAAGCTAAGgtgagtcattaatttagaatgggacaaagtatactgtctaatttttcact Alignment from GeneWise ATACCTCGGATCTCCATTTTCAAATAAGCAAAGACCGATATGGAGGCCAGCCGCTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGG-GCAAGAAGTACTTATGGAGTAACAAAGGGAAAAGTATGCTTTGAAGCCAAG cactctttggtgctgaatgttgtagtgagcccctcttctctgtcttgtagATACATCAGATCTTCACTTCCAAATTAGCAAAGACCGTTATGGAGGCCAGCCACTCTTCTCAGAAAAGTTCCCTACCCTTTGGTCTGGGGCACAGAAGTACCTATGGAGTAACAAAGGGAAAAGTATGCTTCGAAGCTAAGgtgagtcattaatttagaatgggacaaagtatactgtctaatttttcact #### Hnrnpul2_ID2401_5 --> 0 - 1 Original Alignment GTAACTCAGAATCTCCCAATGAAAGAAGGCTGCACAGAAGTCTCTCTCCTTAGAGTTGGGTGGTCTGTTGATTTTTCC-TGTTCACAGCTTg tacttttagacctgcatttgtcataagagagtctttcctccttcccttagGTGACACAGAATCTTCCAATGCAAGAAGGCTGCACAGAAGTCTCTCTCCTTAGAGTTGGGTGGTCTGTAGATTTTTCCCTGTTCACAGCTTggtaagttgattcagttaggtaaccctggcacttcttatttgtacttttta Alignment from CESAR GTAACTCAGAATCTCCCAATGAAAGAAGGCTGCACAGAAGTCTCTCTCCTTAGAGTTGGGTGGTCTGTTGATTTTTCC-TGTTCACAGCTTg tacttttagacctgcatttgtcataagagagtctttcctccttcccttagGTGACACAGAATCTTCCAATGCAAGAAGGCTGCACAGAAGTCTCTCTCCTTAGAGTTGGGTGGTCTGTAGATTTTTCCCTGTTCACAGCTTggtaagttgattcagttaggtaaccctggcacttcttatttgtacttttta Alignment from Spaln_aa2Genome GTAACTCAGAATCTCCCAATGAAAGAAGGCTGCACAGAAGTCTCTCTCCTTAGAGTTGGGTGGTCTGTTGATTTTTCC-TGTTCACAGCTTG tacttttagacctgcatttgtcataagagagtctttcctccttcccttagGTGACACAGAATCTTCCAATGCAAGAAGGCTGCACAGAAGTCTCTCTCCTTAGAGTTGGGTGGTCTGTAGATTTTTCCcTGTTCACAGCTTGgtaagttgattcagttaggtaaccctggcacttcttatttgtacttttta Alignment from Spaln_nt2Genome GTAACTCAGAATCTCCCAATGAAAGAAGGCTGCACAGAAGTCTCTCTCCTTAGAGTTGGGTGGTCTGTTGATTTTTC-CTGTTCACAGCTTG tacttttagacctgcatttgtcataagagagtctttcctccttcccttagGTGACACAGAATCTTCCAATGCAAGAAGGCTGCACAGAAGTCTCTCTCCTTAGAGTTGGGTGGTCTGTAGATTTTTCCCTGTTCACAGCTTGgtaagttgattcagttaggtaaccctggcacttcttatttgtacttttta Alignment from Pairagon GTAACTCAGAATCTCCCAATGAAAGAAGGCTGCACAGAAGTCTCTCTCCTTAGAGTTGGGTGGTCTGTTGATTTTT-CCTGTTCACAGCTTG tacttttagacctgcatttgtcataagagagtctttcctccttcccttagGTGACACAGAATCTTCCAATGCAAGAAGGCTGCACAGAAGTCTCTCTCCTTAGAGTTGGGTGGTCTGTAGATTTTTCCCTGTTCACAGCTTGgtaagttgattcagttaggtaaccctggcacttcttatttgtacttttta Alignment from Exonerate_protein2genome GTAACTCAGAATCTCCCAATGAAAGAAGGCTGCACAGAAGTCTCTCTCCTTAGAGTTGGGTGGTCTGTTGATTTTTCC-TGTTCACAGCTTG tacttttagacctgcatttgtcataagagagtctttcctccttcccttagGTGACACAGAATCTTCCAATGCAAGAAGGCTGCACAGAAGTCTCTCTCCTTAGAGTTGGGTGGTCTGTAGATTTTTCCCTGTTCACAGCTTGgtaagttgattcagttaggtaaccctggcacttcttatttgtacttttta Alignment from Exonerate_coding2genome GTAACTCAGAATCTCCCAATGAAAGAAGGCTGCACAGAAGTCTCTCTCCTTAGAGTTGGGTGGTCTGTTGATTTTTCC-TGTTCACAGCTTG tacttttagacctgcatttgtcataagagagtctttcctccttcccttagGTGACACAGAATCTTCCAATGCAAGAAGGCTGCACAGAAGTCTCTCTCCTTAGAGTTGGGTGGTCTGTAGATTTTTCCCTGTTCACAGCTTGgtaagttgattcagttaggtaaccctggcacttcttatttgtacttttta Alignment from GeneWise GTAACTCAGAATCTCCCAATGAAAGAAGGCTGCACAGAAGTCTCTCTCCTTAGAGTTGGGTGGTCT tacttttagacctgcatttgtcataagagagtctttcctccttcccttagGTGACACAGAATCTTCCAATGCAAGAAGGCTGCACAGAAGTCTCTCTCCTTAGAGTTGGGTGGTCTgtagatttttccctgttcacagcttggtaagttgattcagttaggtaaccctggcacttcttatttgtacttttta #### Hnrnpul2_ID2408_12 --> 2 - 0 Original Alignment tgGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTAC-TGGGGGCAGTCTGGAAACAGAGGG atttgtttgtgtatatgcaatgtaaatctttgaccttgactgttttgcagtgGGTGGGCAGCGCCGAGGCTACGACAACCGGGCCTATGGGCAGCAGTACCTGGGGGCAGTCTGGAACCAGAGGGgtgggggcatgtctttttctactcctccctccggcctgtgaaggatttga Alignment from CESAR tgGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTAC-TGGGGGCAGTCTGGAAACAGAGGG atttgtttgtgtatatgcaatgtaaatctttgaccttgactgttttgcagtgGGTGGGCAGCGCCGAGGCTACGACAACCGGGCCTATGGGCAGCAGTACCTGGGGGCAGTCTGGAACCAGAGGGgtgggggcatgtctttttctactcctccctccggcctgtgaaggatttga Alignment from Spaln_aa2Genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTAC-TGGGGGCAGTCTGGAAACAGAGGG atttgtttgtgtatatgcaatgtaaatctttgaccttgactgttttgcagTGGGTGGGCAGCGCCGAGGCTACGACAACCGGGCCTATGGGCAGCAGTACcTGGGGGCAGTCTGGAACCAGAGGGgtgggggcatgtctttttctactcctccctccggcctgtgaaggatttga Alignment from Spaln_nt2Genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTA-CTGGGGGCAGTCTGGAAACAGAGGG atttgtttgtgtatatgcaatgtaaatctttgaccttgactgttttgcagTGGGTGGGCAGCGCCGAGGCTACGACAACCGGGCCTATGGGCAGCAGTACCTGGGGGCAGTCTGGAACCAGAGGGgtgggggcatgtctttttctactcctccctccggcctgtgaaggatttga Alignment from Pairagon TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTA-CTGGGGGCAGTCTGGAAACAGAGGG atttgtttgtgtatatgcaatgtaaatctttgaccttgactgttttgcagTGGGTGGGCAGCGCCGAGGCTACGACAACCGGGCCTATGGGCAGCAGTACCTGGGGGCAGTCTGGAACCAGAGGGgtgggggcatgtctttttctactcctccctccggcctgtgaaggatttga Alignment from Exonerate_protein2genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTAC-TGGGGGCAGTCTGGAAACAGAGGG atttgtttgtgtatatgcaatgtaaatctttgaccttgactgttttgcagTGGGTGGGCAGCGCCGAGGCTACGACAACCGGGCCTATGGGCAGCAGTACCTGGGGGCAGTCTGGAACCAGAGGGgtgggggcatgtctttttctactcctccctccggcctgtgaaggatttga Alignment from Exonerate_coding2genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAGTAC-TGGGGGCAGTCTGGAAACAGAGGG atttgtttgtgtatatgcaatgtaaatctttgaccttgactgttttgcagTGGGTGGGCAGCGCCGAGGCTACGACAACCGGGCCTATGGGCAGCAGTACCTGGGGGCAGTCTGGAACCAGAGGGgtgggggcatgtctttttctactcctccctccggcctgtgaaggatttga Alignment from GeneWise TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAGCAG-TACTGGGGGCAGTCTGGAAACAGAGGG atttgtttgtgtatatgcaatgtaaatctttgaccttgactgttttgcagTGGGTGGGCAGCGCCGAGGCTACGACAACCGGGCCTATGGGCAGCAGTACCTGGGGGCAGTCTGGAACCAGAGGGgtgggggcatgtctttttctactcctccctccggcctgtgaaggatttga #### Hnrnpul2_ID2409_13 --> 0 - 0 Original Alignment GGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAACGA-TTCTACAGTCGAGATTATGAGTACAACAGATACAGAGACTATTACAGACAATACAACCGGGAT tgatcttaaaggcccataaagcattgaatcctgccctctactcctgtcagGGCTACCGCAATTTCTATGATCGATACAAAGGTGACTATGAACGACTTCTATAGTCGGGATTATGAGTACAATAGATATAGGGGATATTACAGAGAATACAACCAAGATgtaagtatatgggatagagcggggaagaaaagtacacaatccactggatg Alignment from CESAR GGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAACGA-TTCTACAGTCGAGATTATGAGTACAACAGATACAGAGACTATTACAGACAATACAACCGGGAT tgatcttaaaggcccataaagcattgaatcctgccctctactcctgtcagGGCTACCGCAATTTCTATGATCGATACAAAGGTGACTATGAACGACTTCTATAGTCGGGATTATGAGTACAATAGATATAGGGGATATTACAGAGAATACAACCAAGATgtaagtatatgggatagagcggggaagaaaagtacacaatccactggatg Alignment from Spaln_aa2Genome GGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAACGA-TTCTACAGTCGAGATTATGAGTACAACAGATACAGAGACTATTACAGACAATACAACCGGGAT tgatcttaaaggcccataaagcattgaatcctgccctctactcctgtcagGGCTACCGCAATTTCTATGATCGATACAAAGGTGACTATGAACGAcTTCTATAGTCGGGATTATGAGTACAATAGATATAGGGGATATTACAGAGAATACAACCAAGATgtaagtatatgggatagagcggggaagaaaagtacacaatccactggatg Alignment from Spaln_nt2Genome GGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAACGA-TTCTACAGTCGAGATTATGAGTACAACAGATACAGAGACTATTACAGACAATACAACCGGGAT tgatcttaaaggcccataaagcattgaatcctgccctctactcctgtcagGGCTACCGCAATTTCTATGATCGATACAAAGGTGACTATGAACGACTTCTATAGTCGGGATTATGAGTACAATAGATATAGGGGATATTACAGAGAATACAACCAAGATgtaagtatatgggatagagcggggaagaaaagtacacaatccactggatg Alignment from Pairagon GGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAACGA-TTCTACAGTCGAGATTATGAGTACAACAGATACAGAGACTATTACAGACAATACAACCGGGAT tgatcttaaaggcccataaagcattgaatcctgccctctactcctgtcagGGCTACCGCAATTTCTATGATCGATACAAAGGTGACTATGAACGACTTCTATAGTCGGGATTATGAGTACAATAGATATAGGGGATATTACAGAGAATACAACCAAGATgtaagtatatgggatagagcggggaagaaaagtacacaatccactggatg Alignment from Exonerate_protein2genome GGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAACGA-TTCTACAGTCGAGATTATGAGTACAACAGATACAGAGACTATTACAGACAATACAACCGGGAT tgatcttaaaggcccataaagcattgaatcctgccctctactcctgtcagGGCTACCGCAATTTCTATGATCGATACAAAGGTGACTATGAACGACTTCTATAGTCGGGATTATGAGTACAATAGATATAGGGGATATTACAGAGAATACAACCAAGATgtaagtatatgggatagagcggggaagaaaagtacacaatccactggatg Alignment from Exonerate_coding2genome GGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAACGA-TTCTACAGTCGAGATTATGAGTACAACAGATACAGAGACTATTACAGACAATACAACCGGGAT tgatcttaaaggcccataaagcattgaatcctgccctctactcctgtcagGGCTACCGCAATTTCTATGATCGATACAAAGGTGACTATGAACGACTTCTATAGTCGGGATTATGAGTACAATAGATATAGGGGATATTACAGAGAATACAACCAAGATgtaagtatatgggatagagcggggaagaaaagtacacaatccactggatg Alignment from GeneWise GGCTACCGTAATTTCTATGATCGATACAGAGGTGACTATGAA-CGATTCTACAGTCGAGATTATGAGTACAACAGATACAGAGACTATTACAGACAATACAACCGGGAT tgatcttaaaggcccataaagcattgaatcctgccctctactcctgtcagGGCTACCGCAATTTCTATGATCGATACAAAGGTGACTATGAACGACTTCTATAGTCGGGATTATGAGTACAATAGATATAGGGGATATTACAGAGAATACAACCAAGATgtaagtatatgggatagagcggggaagaaaagtacacaatccactggatg #### Hps1_ID8614_14 --> 1 - 2 Original Alignment gGAGAGGCTTCTG-GACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGtc catcaacaattgcccctgcctgagcttccgtatgtgtttgtgcgttttaggGAGAGACTTTTGCGACTGGAAGGACTTTTCCCTGGTGAATAGCTGGAGAAATGTCACCATGGTAgcgtatgttcttgatatatattcataggaataacccatggctatcggagagt Alignment from CESAR gGAGAGGCTTCTG-GACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGtc catcaacaattgcccctgcctgagcttccgtatgtgtttgtgcgttttaggGAGAGACTTTTGCGACTGGAAGGACTTTTCCCTGGTGAATAGCTGGAGAAATGTCACCATGGTAgcgtatgttcttgatatatattcataggaataacccatggctatcggagagt Alignment from Spaln_aa2Genome GGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGTC catcaacaattgcccctgcctgagcttccgtatgtgtttgtgcgttttagggagAGAC---TTTTGCGACTGGAAGGACTTTTCCCTGGTGAATAGCTGGAGAAATGTCACCATGGTAGCgtatgttcttgatatatattcataggaataacccatggctatcggagagt Alignment from Spaln_nt2Genome GGAGAGGCTTCTG-GACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGTC catcaacaattgcccctgcctgagcttccgtatgtgtttgtgcgttttagGGAGAGACTTTTGCGACTGGAAGGACTTTTCCCTGGTGAATAGCTGGAGAAATGTCACCATGGTAGCgtatgttcttgatatatattcataggaataacccatggctatcggagagt Alignment from Pairagon GGAGAGGCTTCTG-GACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGTC catcaacaattgcccctgcctgagcttccgtatgtgtttgtgcgttttagGGAGAGACTTTTGCGACTGGAAGGACTTTTCCCTGGTGAATAGCTGGAGAAATGTCACCATGGTAGCgtatgttcttgatatatattcataggaataacccatggctatcggagagt Alignment from Exonerate_protein2genome GGAGAGGCTTCTG-GACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGTC catcaacaattgcccctgcctgagcttccgtatgtgtttgtgcgttttagGGAGAGACTTTTGCGACTGGAAGGACTTTTCCCTGGTGAATAGCTGGAGAAATGTCACCATGGTAGCgtatgttcttgatatatattcataggaataacccatggctatcggagagt Alignment from Exonerate_coding2genome GGAGAGGCTTCTG-GACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGTC catcaacaattgcccctgcctgagcttccgtatgtgtttgtgcgttttagGGAGAGACTTTTGCGACTGGAAGGACTTTTCCCTGGTGAATAGCTGGAGAAATGTCACCATGGTAGCgtatgttcttgatatatattcataggaataacccatggctatcggagagt Alignment from GeneWise GGAGAGGCTTCTGGACTGGAAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGTC catcaacaattgcccctgcctgagcttccgtatgtgtttgtgcgttttagggagAGAC---TTTTGCGACTGGAAGGACTTTTCCCTGGTGAATAGCTGGAGAAATGTCACCATGGTAGCgtatgttcttgatatatattcataggaataacccatggctatcggagagt #### Hps1_ID8615_13 --> 1 - 2 Original Alignment gCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGG-CTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGaa ctgtattctgtggtggagagctcaatgtcactgctggcctctctccccaggTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATCTACCAGCCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCACCTACAGGACCAAGCCCAAAAACTTATGaagtaagtgtgtcgtgcttgaagatgagaccagtagttagggcacatcaaca Alignment from CESAR gCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGG-CTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGaa ctgtattctgtggtggagagctcaatgtcactgctggcctctctccccaggTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATCTACCAGCCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCACCTACAGGACCAAGCCCAAAAACTTATGaagtaagtgtgtcgtgcttgaagatgagaccagtagttagggcacatcaaca Alignment from Spaln_aa2Genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGG-CTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ctgtattctgtggtggagagctcaatgtcactgctggcctctctccccagGTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATCTACCAGcCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCACCTACAGGACCAAGCCCAAAAACTTATGAAgtaagtgtgtcgtgcttgaagatgagaccagtagttagggcacatcaaca Alignment from Spaln_nt2Genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGGC-TTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ctgtattctgtggtggagagctcaatgtcactgctggcctctctccccagGTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATCTACCAGCCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCACCTACAGGACCAAGCCCAAAAACTTATGAAgtaagtgtgtcgtgcttgaagatgagaccagtagttagggcacatcaaca Alignment from Pairagon GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGG-CTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ctgtattctgtggtggagagctcaatgtcactgctggcctctctccccagGTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATCTACCAGCCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCACCTACAGGACCAAGCCCAAAAACTTATGAAgtaagtgtgtcgtgcttgaagatgagaccagtagttagggcacatcaaca Alignment from Exonerate_protein2genome GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTACCGG-CTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ctgtattctgtggtggagagctcaatgtcactgctggcctctctccccagGTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATCTACCAGCCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCACCTACAGGACCAAGCCCAAAAACTTATGAAgtaagtgtgtcgtgcttgaagatgagaccagtagttagggcacatcaaca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GCTGCTCCAGGTCTGTGGAAAGCTGAAGCGACAGCTGTGTGTCATCTAC-CGGCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGACCGCACCTGCCCCAGCACCTGCAGGACCGAGCCCAGAAACTCATGAA ctgtattctgtggtggagagctcaatgtcactgctggcctctctccccagGTTGCTCCAGGTCTGTGGAAAGTTGAAGCGACAGTTGTGTATAATCTACCAGCCTTAGCTTCCTGGTCACTGCACCCAGCAGAGGAGGGCCACACCTGCCCCAGCACCTACAGGACCAAGCCCAAAAACTTATGAAgtaagtgtgtcgtgcttgaagatgagaccagtagttagggcacatcaaca #### Il33_ID6362_5 --> 2 - 1 Original Alignment acCAGGTGCTACTACGCTACTATGAGTCTCCC-TGTCCTGCAAGTCAATCAg aactccacagtctcatctttgttaaatcaaaatgtgcttgctctgtctagacCAAGTGCTGCTGTGCTACTATGAGTCACCCCTGTCCTGCAAGTCAATCCggtaagtcaatagtcagcaggagagaatggtgcttagggtgttaacgaagc Alignment from CESAR acCAGGTGCTACTACGCTACTATGAGTCTCCC-TGTCCTGCAAGTCAATCAg aactccacagtctcatctttgttaaatcaaaatgtgcttgctctgtctagacCAAGTGCTGCTGTGCTACTATGAGTCACCCCTGTCCTGCAAGTCAATCCggtaagtcaatagtcagcaggagagaatggtgcttagggtgttaacgaagc Alignment from Spaln_aa2Genome ACCAGGTGCTACTACGCTACTATGAGTCTCCC-TGTCCTGCAAGTCAATCAG aactccacagtctcatctttgttaaatcaaaatgtgcttgctctgtctagACCAAGTGCTGCTGTGCTACTATGAGTCACCCcTGTCCTGCAAGTCAATCCGgtaagtcaatagtcagcaggagagaatggtgcttagggtgttaacgaagc Alignment from Spaln_nt2Genome ACCAGGTGCTACTACGCTACTATGAGTCT-CCCTGTCCTGCAAGTCAATCAG aactccacagtctcatctttgttaaatcaaaatgtgcttgctctgtctagACCAAGTGCTGCTGTGCTACTATGAGTCACCCCTGTCCTGCAAGTCAATCCGgtaagtcaatagtcagcaggagagaatggtgcttagggtgttaacgaagc Alignment from Pairagon ACCAGGTGCTACTACGCTACTATGAGTC-TCCCTGTCCTGCAAGTCAATCAG aactccacagtctcatctttgttaaatcaaaatgtgcttgctctgtctagACCAAGTGCTGCTGTGCTACTATGAGTCACCCCTGTCCTGCAAGTCAATCCGgtaagtcaatagtcagcaggagagaatggtgcttagggtgttaacgaagc Alignment from Exonerate_protein2genome ACCAGGTGCTACTACGCTACTATGAGTCT-CCCTGTCCTGCAAGTCAATCAG aactccacagtctcatctttgttaaatcaaaatgtgcttgctctgtctagACCAAGTGCTGCTGTGCTACTATGAGTCACCCCTGTCCTGCAAGTCAATCCGgtaagtcaatagtcagcaggagagaatggtgcttagggtgttaacgaagc Alignment from Exonerate_coding2genome aactccacagtctcatctttgttaaatcaaaatgtgcttgctctgtctagaccaagtgctgctgtgctactatgagtcacccctgtcctgcaagtcaatccggtaagtcaatagtcagcaggagagaatggtgcttagggtgttaacgaagc Alignment from GeneWise aactccacagtctcatctttgttaaatcaaaatgtgcttgctctgtctagaccaagtgctgctgtgctactatgagtcacccctgtcctgcaagtcaatccggtaagtcaatagtcagcaggagagaatggtgcttagggtgttaacgaagc #### Incenp_ID2604_15 --> 0 - 0 Original Alignment GAAGAGCAACAGCGCCTGGCT-GAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaaggggggaggatgttatcttttttacttacagGAGGAGCAACAGCGCCTGGCTCAAGCAGCAGCCACAGGAAGAGCAGGCAAGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAAGGTACTCAACATGACTGTGGATGTGCGGgtaagtcgaagaagctgtcttcctgttcaaaccaacctgtgcccggaagc Alignment from CESAR GAAGAGCAACAGCGCCTGGCT-GAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaaggggggaggatgttatcttttttacttacagGAGGAGCAACAGCGCCTGGCTCAAGCAGCAGCCACAGGAAGAGCAGGCAAGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAAGGTACTCAACATGACTGTGGATGTGCGGgtaagtcgaagaagctgtcttcctgttcaaaccaacctgtgcccggaagc Alignment from Spaln_aa2Genome GAAGAGCAACAGCGCCTGGCTGAG-CAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaaggggggaggatgttatcttttttacttacagGAGGAGCAACAGCGCCTGGCTCAAgCAGCAGCCACAGGAAGAGCAGGCAAGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAAGGTACTCAACATGACTGTGGATGTGCGGgtaagtcgaagaagctgtcttcctgttcaaaccaacctgtgcccggaagc Alignment from Spaln_nt2Genome GAAGAGCAACAGCGCCTGGCTGA-GCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaaggggggaggatgttatcttttttacttacagGAGGAGCAACAGCGCCTGGCTCAAGCAGCAGCCACAGGAAGAGCAGGCAAGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAAGGTACTCAACATGACTGTGGATGTGCGGgtaagtcgaagaagctgtcttcctgttcaaaccaacctgtgcccggaagc Alignment from Pairagon GAAGAGCAACAGCGCCTGGCT-GAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaaggggggaggatgttatcttttttacttacagGAGGAGCAACAGCGCCTGGCTCAAGCAGCAGCCACAGGAAGAGCAGGCAAGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAAGGTACTCAACATGACTGTGGATGTGCGGgtaagtcgaagaagctgtcttcctgttcaaaccaacctgtgcccggaagc Alignment from Exonerate_protein2genome GAAGAGCAACAGCGCCTGGCTGAG-CAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaaggggggaggatgttatcttttttacttacagGAGGAGCAACAGCGCCTGGCTCAAGCAGCAGCCACAGGAAGAGCAGGCAAGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAAGGTACTCAACATGACTGTGGATGTGCGGgtaagtcgaagaagctgtcttcctgttcaaaccaacctgtgcccggaagc Alignment from Exonerate_coding2genome GAAGAGCAACAGCGCCTGGCTGAG-CAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaaggggggaggatgttatcttttttacttacagGAGGAGCAACAGCGCCTGGCTCAAGCAGCAGCCACAGGAAGAGCAGGCAAGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAAGGTACTCAACATGACTGTGGATGTGCGGgtaagtcgaagaagctgtcttcctgttcaaaccaacctgtgcccggaagc Alignment from GeneWise GCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gggggtagtggtgcggtaaggggggaggatgttatcttttttacttacaggaggagcaacagCGCCTGGCTCAAGCAGCAGCCACAGGAAGAGCAGGCAAGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAAGGTACTCAACATGACTGTGGATGTGCGGgtaagtcgaagaagctgtcttcctgttcaaaccaacctgtgcccggaagc #### Incenp_ID2605_14 --> 1 - 0 Original Alignment gGAGATGCAGGAGAGAGAGAAAGCC-CTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG agcttggaaattctcttggttggaagaaacttcctgttctcttcttctaggGAGATGCAGGAGAGAGAGAAAGCCCTTGAGACTCCAAAAGGAACGACTTCAAAAGGAACTGGGGGAAAAGAAGCGGAAGgtgagtgctttgtaaagatgtgtactccaggttgaatatgtgtaaagcag Alignment from CESAR gGAGATGCAGGAGAGAGAGAAAGCC-CTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG agcttggaaattctcttggttggaagaaacttcctgttctcttcttctaggGAGATGCAGGAGAGAGAGAAAGCCCTTGAGACTCCAAAAGGAACGACTTCAAAAGGAACTGGGGGAAAAGAAGCGGAAGgtgagtgctttgtaaagatgtgtactccaggttgaatatgtgtaaagcag Alignment from Spaln_aa2Genome GGAGATGCAGGAGAGAGAGAAAGCC-CTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG agcttggaaattctcttggttggaagaaacttcctgttctcttcttctagGGAGATGCAGGAGAGAGAGAAAGCCcTTGAGACTCCAAAAGGAACGACTTCAAAAGGAACTGGGGGAAAAGAAGCGGAAGgtgagtgctttgtaaagatgtgtactccaggttgaatatgtgtaaagcag Alignment from Spaln_nt2Genome GGAGATGCAGGAGAGAGAGAAAG-CCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG agcttggaaattctcttggttggaagaaacttcctgttctcttcttctagGGAGATGCAGGAGAGAGAGAAAGCCCTTGAGACTCCAAAAGGAACGACTTCAAAAGGAACTGGGGGAAAAGAAGCGGAAGgtgagtgctttgtaaagatgtgtactccaggttgaatatgtgtaaagcag Alignment from Pairagon GGAGATGCAGGAGAGAGAGAAAGCCC-TGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG agcttggaaattctcttggttggaagaaacttcctgttctcttcttctagGGAGATGCAGGAGAGAGAGAAAGCCCTTGAGACTCCAAAAGGAACGACTTCAAAAGGAACTGGGGGAAAAGAAGCGGAAGgtgagtgctttgtaaagatgtgtactccaggttgaatatgtgtaaagcag Alignment from Exonerate_protein2genome GGAGATGCAGGAGAGAGAGAAAGCC-CTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG agcttggaaattctcttggttggaagaaacttcctgttctcttcttctagGGAGATGCAGGAGAGAGAGAAAGCCCTTGAGACTCCAAAAGGAACGACTTCAAAAGGAACTGGGGGAAAAGAAGCGGAAGgtgagtgctttgtaaagatgtgtactccaggttgaatatgtgtaaagcag Alignment from Exonerate_coding2genome GGAGATGCAGGAGAGAGAGAAAGCC-CTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG agcttggaaattctcttggttggaagaaacttcctgttctcttcttctagGGAGATGCAGGAGAGAGAGAAAGCCCTTGAGACTCCAAAAGGAACGACTTCAAAAGGAACTGGGGGAAAAGAAGCGGAAGgtgagtgctttgtaaagatgtgtactccaggttgaatatgtgtaaagcag Alignment from GeneWise GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG agcttggaaattctcttggttggaagaaacttcctgttctcttcttctagggagATGCAGGAGAGAGAGA---AAGCCCTTGAGACTCCAAAAGGAACGACTTCAAAAGGAACTGGGGGAAAAGAAGCGGAAGgtgagtgctttgtaaagatgtgtactccaggttgaatatgtgtaaagcag #### Incenp_ID2611_8 --> 1 - 0 Original Alignment gAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAG-AATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG agagggctattgacacttgttaatgacaccactcattttctttctggcaggAGGAAACGCAGTTACAAAAAGGCAATAAGTAAGCCAGATGAGGAGCAACTGGAAGATGAAGAACTGAAGCCCTGCCAGCAATAAAACACCTTCACCACCCTGCCCGCCCAACAAGgtatggaactgctcatgtttgatgcctttgttgtgcattctgtccaagcc Alignment from CESAR gAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAG-AATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG agagggctattgacacttgttaatgacaccactcattttctttctggcaggAGGAAACGCAGTTACAAAAAGGCAATAAGTAAGCCAGATGAGGAGCAACTGGAAGATGAAGAACTGAAGCCCTGCCAGCAATAAAACACCTTCACCACCCTGCCCGCCCAACAAGgtatggaactgctcatgtttgatgcctttgttgtgcattctgtccaagcc Alignment from Spaln_aa2Genome GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAG-AATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG agagggctattgacacttgttaatgacaccactcattttctttctggcagGAGGAAACGCAGTTACAAAAAGGCAATAAGTAAGCCAGATGAGGAGCAACTGGAAGATGAAGAACTGAAGCCCTGCCAGcAATAAAACACCTTCACCACCCTGCCCGCCCAACAAGgtatggaactgctcatgtttgatgcctttgttgtgcattctgtccaagcc Alignment from Spaln_nt2Genome GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAG-AATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG agagggctattgacacttgttaatgacaccactcattttctttctggcagGAGGAAACGCAGTTACAAAAAGGCAATAAGTAAGCCAGATGAGGAGCAACTGGAAGATGAAGAACTGAAGCCCTGCCAGCAATAAAACACCTTCACCACCCTGCCCGCCCAACAAGgtatggaactgctcatgtttgatgcctttgttgtgcattctgtccaagcc Alignment from Pairagon GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAG-AATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG agagggctattgacacttgttaatgacaccactcattttctttctggcagGAGGAAACGCAGTTACAAAAAGGCAATAAGTAAGCCAGATGAGGAGCAACTGGAAGATGAAGAACTGAAGCCCTGCCAGCAATAAAACACCTTCACCACCCTGCCCGCCCAACAAGgtatggaactgctcatgtttgatgcctttgttgtgcattctgtccaagcc Alignment from Exonerate_protein2genome GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAG-AATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG agagggctattgacacttgttaatgacaccactcattttctttctggcagGAGGAAACGCAGTTACAAAAAGGCAATAAGTAAGCCAGATGAGGAGCAACTGGAAGATGAAGAACTGAAGCCCTGCCAGCAATAAAACACCTTCACCACCCTGCCCGCCCAACAAGgtatggaactgctcatgtttgatgcctttgttgtgcattctgtccaagcc Alignment from Exonerate_coding2genome GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGCCAG-AATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG agagggctattgacacttgttaatgacaccactcattttctttctggcagGAGGAAACGCAGTTACAAAAAGGCAATAAGTAAGCCAGATGAGGAGCAACTGGAAGATGAAGAACTGAAGCCCTGCCAGCAATAAAACACCTTCACCACCCTGCCCGCCCAACAAGgtatggaactgctcatgtttgatgcctttgttgtgcattctgtccaagcc Alignment from GeneWise GAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAGAACTGCAGCCCTGC-CAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAG agagggctattgacacttgttaatgacaccactcattttctttctggcagGAGGAAACGCAGTTACAAAAAGGCAATAAGTAAGCCAGATGAGGAGCAACTGGAAGATGAAGAACTGAAGCCCTGCCAGCAATAAAACACCTTCACCACCCTGCCCGCCCAACAAGgtatggaactgctcatgtttgatgcctttgttgtgcattctgtccaagcc #### Incenp_ID2614_5 --> 1 - 0 Original Alignment cCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCT-GAGGAGGCAGAAGAGGAGCAAGAG atgtactgtgaagataccagaaactttggtctctgattttttatctccagcCTGGAGCAGGAGCCTGTCGAGGTTACTGAACCTCGAGGAGGCAGAAGAGGAGCAGGAGgtgagtttacaagccacacatgggtaggctctgactcccccaagcttgtg Alignment from CESAR cCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCT-GAGGAGGCAGAAGAGGAGCAAGAG atgtactgtgaagataccagaaactttggtctctgattttttatctccagcCTGGAGCAGGAGCCTGTCGAGGTTACTGAACCTCGAGGAGGCAGAAGAGGAGCAGGAGgtgagtttacaagccacacatgggtaggctctgactcccccaagcttgtg Alignment from Spaln_aa2Genome CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCT-GAGGAGGCAGAAGAGGAGCAAGAG atgtactgtgaagataccagaaactttggtctctgattttttatctccagCCTGGAGCAGGAGCCTGTCGAGGTTACTGAACCTcGAGGAGGCAGAAGAGGAGCAGGAGgtgagtttacaagccacacatgggtaggctctgactcccccaagcttgtg Alignment from Spaln_nt2Genome CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCT-GAGGAGGCAGAAGAGGAGCAAGAG atgtactgtgaagataccagaaactttggtctctgattttttatctccagCCTGGAGCAGGAGCCTGTCGAGGTTACTGAACCTCGAGGAGGCAGAAGAGGAGCAGGAGgtgagtttacaagccacacatgggtaggctctgactcccccaagcttgtg Alignment from Pairagon CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCT-GAGGAGGCAGAAGAGGAGCAAGAG atgtactgtgaagataccagaaactttggtctctgattttttatctccagCCTGGAGCAGGAGCCTGTCGAGGTTACTGAACCTCGAGGAGGCAGAAGAGGAGCAGGAGgtgagtttacaagccacacatgggtaggctctgactcccccaagcttgtg Alignment from Exonerate_protein2genome CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCT-GAGGAGGCAGAAGAGGAGCAAGAG atgtactgtgaagataccagaaactttggtctctgattttttatctccagCCTGGAGCAGGAGCCTGTCGAGGTTACTGAACCTCGAGGAGGCAGAAGAGGAGCAGGAGgtgagtttacaagccacacatgggtaggctctgactcccccaagcttgtg Alignment from Exonerate_coding2genome CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCT-GAGGAGGCAGAAGAGGAGCAAGAG atgtactgtgaagataccagaaactttggtctctgattttttatctccagCCTGGAGCAGGAGCCTGTCGAGGTTACTGAACCTCGAGGAGGCAGAAGAGGAGCAGGAGgtgagtttacaagccacacatgggtaggctctgactcccccaagcttgtg Alignment from GeneWise CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCT-GAGGAGGCAGAAGAGGAGCAAGAG atgtactgtgaagataccagaaactttggtctctgattttttatctccagCCTGGAGCAGGAGCCTGTCGAGGTTACTGAACCTCGAGGAGGCAGAAGAGGAGCAGGAGgtgagtttacaagccacacatgggtaggctctgactcccccaagcttgtg #### Jak2_ID6240_16 --> 0 - 1 Original Alignment AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTAT-GAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAg ccagttgtgaagcaacctgcatctctaacgggtgtccatcttccttttagAAACTGCAGTTCTATGAAGACAAGCATCAGCTTCCTGCCCCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATCGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGATCTTAACAGCCTGTTTACTCCTggtgggtgctggtcagactcctctgaccactgatgatctatttatcttcct Alignment from CESAR AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTAT-GAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAg ccagttgtgaagcaacctgcatctctaacgggtgtccatcttccttttagAAACTGCAGTTCTATGAAGACAAGCATCAGCTTCCTGCCCCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATCGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGATCTTAACAGCCTGTTTACTCCTggtgggtgctggtcagactcctctgaccactgatgatctatttatcttcct Alignment from Spaln_aa2Genome AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTAT-GAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG ccagttgtgaagcaacctgcatctctaacgggtgtccatcttccttttagAAACTGCAGTTCTATGAAGACAAGCATCAGCTTCCTGCCCCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATcGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGATCTTAACAGCCTGTTTACTCCTGgtgggtgctggtcagactcctctgaccactgatgatctatttatcttcct Alignment from Spaln_nt2Genome AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTAT-GAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG ccagttgtgaagcaacctgcatctctaacgggtgtccatcttccttttagAAACTGCAGTTCTATGAAGACAAGCATCAGCTTCCTGCCCCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATCGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGATCTTAACAGCCTGTTTACTCCTGgtgggtgctggtcagactcctctgaccactgatgatctatttatcttcct Alignment from Pairagon AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTAT-GAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG ccagttgtgaagcaacctgcatctctaacgggtgtccatcttccttttagAAACTGCAGTTCTATGAAGACAAGCATCAGCTTCCTGCCCCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATCGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGATCTTAACAGCCTGTTTACTCCTGgtgggtgctggtcagactcctctgaccactgatgatctatttatcttcct Alignment from Exonerate_protein2genome AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTAT-GAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG ccagttgtgaagcaacctgcatctctaacgggtgtccatcttccttttagAAACTGCAGTTCTATGAAGACAAGCATCAGCTTCCTGCCCCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATCGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGATCTTAACAGCCTGTTTACTCCTGgtgggtgctggtcagactcctctgaccactgatgatctatttatcttcct Alignment from Exonerate_coding2genome AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTAT-GAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG ccagttgtgaagcaacctgcatctctaacgggtgtccatcttccttttagAAACTGCAGTTCTATGAAGACAAGCATCAGCTTCCTGCCCCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATCGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGATCTTAACAGCCTGTTTACTCCTGgtgggtgctggtcagactcctctgaccactgatgatctatttatcttcct Alignment from GeneWise AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTAT-GAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTGTTTACTCCAG ccagttgtgaagcaacctgcatctctaacgggtgtccatcttccttttagAAACTGCAGTTCTATGAAGACAAGCATCAGCTTCCTGCCCCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATCGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGATCTTAACAGCCTGTTTACTCCTGgtgggtgctggtcagactcctctgaccactgatgatctatttatcttcct #### Kat5_ID1110_12 --> 2 - 2 Original Alignment gcTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTG-ATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCaa accaccccacttcaacatcccctcttccctgtttcttccctatcttacaggcTATGAACTCTCGAAAGTAGATGGGAAGACTGGCACTCCCGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGCATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCaagtgagttgaagtgctaactgggggaatgtggtacggtctatctgttctgg Alignment from CESAR gcTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTG-ATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCaa accaccccacttcaacatcccctcttccctgtttcttccctatcttacaggcTATGAACTCTCGAAAGTAGATGGGAAGACTGGCACTCCCGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGCATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCaagtgagttgaagtgctaactgggggaatgtggtacggtctatctgttctgg Alignment from Spaln_aa2Genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTG-ATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA accaccccacttcaacatcccctcttccctgtttcttccctatcttacagGCTATGAACTCTCGAAAGTAGATGGGAAGACTGGCACTCCCGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGcATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtgagttgaagtgctaactgggggaatgtggtacggtctatctgttctgg Alignment from Spaln_nt2Genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTG-ATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA accaccccacttcaacatcccctcttccctgtttcttccctatcttacagGCTATGAACTCTCGAAAGTAGATGGGAAGACTGGCACTCCCGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGCATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtgagttgaagtgctaactgggggaatgtggtacggtctatctgttctgg Alignment from Pairagon GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTG-ATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA accaccccacttcaacatcccctcttccctgtttcttccctatcttacagGCTATGAACTCTCGAAAGTAGATGGGAAGACTGGCACTCCCGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGCATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtgagttgaagtgctaactgggggaatgtggtacggtctatctgttctgg Alignment from Exonerate_protein2genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTG-ATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA accaccccacttcaacatcccctcttccctgtttcttccctatcttacagGCTATGAACTCTCGAAAGTAGATGGGAAGACTGGCACTCCCGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGCATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtgagttgaagtgctaactgggggaatgtggtacggtctatctgttctgg Alignment from Exonerate_coding2genome GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTG-ATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA accaccccacttcaacatcccctcttccctgtttcttccctatcttacagGCTATGAACTCTCGAAAGTAGATGGGAAGACTGGCACTCCCGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGCATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtgagttgaagtgctaactgggggaatgtggtacggtctatctgttctgg Alignment from GeneWise GCTATGAACTCTCGAAAGTAGAAGGGAAGACCGGAACTCCTGAGAAACCCCTGTCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATC-CTGATGGGGCTGAAGTCGGAGAGCGGGGAGAGGCCACAGATCACCATCAA accaccccacttcaacatcccctcttccctgtttcttccctatcttacagGCTATGAACTCTCGAAAGTAGATGGGAAGACTGGCACTCCCGAGAAACCCCTATCAGATCTTGGCCTCCTATCCTACCGAAGTTACTGGTCCCAAACCATCTTGGAGATCCTGCATGGGGCTGAAGTCAGAGAGTGGGGAGAGGCCCCAGATCACCATCAAgtgagttgaagtgctaactgggggaatgtggtacggtctatctgttctgg #### Kat5_ID1115_7 --> 0 - 0 Original Alignment AATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAAT-TGCTTGGGCACTGATGAG cagtttcctcctccagaacaatctcacatattttccttctttatggttagAATGGATCAACATGTAGAGCTGTAGCAGCCCAGCCAGGGTGGAAGCGAAAATCTAACCTGCTTGGGCACTGATGAGgtgagtccccagccagggtggaagtaaaatctaactgcttgggcgctgat Alignment from CESAR AATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAAT-TGCTTGGGCACTGATGAG cagtttcctcctccagaacaatctcacatattttccttctttatggttagAATGGATCAACATGTAGAGCTGTAGCAGCCCAGCCAGGGTGGAAGCGAAAATCTAACCTGCTTGGGCACTGATGAGgtgagtccccagccagggtggaagtaaaatctaactgcttgggcgctgat Alignment from Spaln_aa2Genome AATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAAT-TGCTTGGGCACTGATGAG cagtttcctcctccagaacaatctcacatattttccttctttatggttagAATGGATCAACATGTAGAGCTGTAGCAGCCCAGCCAGGGTGGAAGCGAAAATCTAACcTGCTTGGGCACTGATGAGgtgagtccccagccagggtggaagtaaaatctaactgcttgggcgctgat Alignment from Spaln_nt2Genome AATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCTGG ACGGAAGCGGAAATCTAATTGCTTGGGCACTGAT cagtttcctcctccagaacaatctcacatattttccttctttatggttagAATGGATCAACATGTAGAGCTGTAGCAGCCCAGCCAGGgtggaagcgaaaatctaacctgcttgggcactgatgaggtgagtccccagccagGGTGGAAGTAAAATCTAACTGCTTGGGCGCTGAT Alignment from Pairagon AATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAA-TTGCTTGGGCACTGATGAG cagtttcctcctccagaacaatctcacatattttccttctttatggttagAATGGATCAACATGTAGAGCTGTAGCAGCCCAGCCAGGGTGGAAGCGAAAATCTAACCTGCTTGGGCACTGATGAGgtgagtccccagccagggtggaagtaaaatctaactgcttgggcgctgat Alignment from Exonerate_protein2genome AATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGGAAATCTAAT-TGCTTGGGCACTGATGAG cagtttcctcctccagaacaatctcacatattttccttctttatggttagAATGGATCAACATGTAGAGCTGTAGCAGCCCAGCCAGGGTGGAAGCGAAAATCTAACCTGCTTGGGCACTGATGAGgtgagtccccagccagggtggaagtaaaatctaactgcttgggcgctgat Alignment from Exonerate_coding2genome cagtttcctcctccagaacaatctcacatattttccttctttatggttagaatggatcaacatgtagagctgtagcagcccagccagggtggaagcgaaaatctaacctgcttgggcactgatgaggtgagtccccagccagggtggaagtaaaatctaactgcttgggcgctgat Alignment from GeneWise AATGGGTCAGCCCGTAGGGCAGTGGCAGCCCAGCCTGGACGGAAGCGGAAATCT-AATTGCTTGGGCACTGATGAG cagtttcctcctccagaacaatctcacatattttccttctttatggttagAATGGATCAACATGTAGAGCTGTAGCAGCCCAGCCAGGGTGGAAGCGAAAATCTAACCTGCTTGGGCACTGATGAGgtgagtccccagccagggtggaagtaaaatctaactgcttgggcgctgat #### Kat5_ID1116_6 --> 0 - 0 Original Alignment AAACGGAAGGTGGAGGTGGTTTCACCA-GCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG tacccacctcctgcgccctctaacctggttgacagcaggttctcttgcagAAACGGAAGGTTGAGGTGGTTTCACCACACAAGCCTGGTGCCCAGTGAGACAGCTGCAGTCTCAGTTTTCCCTCAGgtaagtcttcgactctttcttcaagtactgaaatgttttgtcttcacttc Alignment from CESAR AAACGGAAGGTGGAGGTGGTTTCACCA-GCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG tacccacctcctgcgccctctaacctggttgacagcaggttctcttgcagAAACGGAAGGTTGAGGTGGTTTCACCACACAAGCCTGGTGCCCAGTGAGACAGCTGCAGTCTCAGTTTTCCCTCAGgtaagtcttcgactctttcttcaagtactgaaatgttttgtcttcacttc Alignment from Spaln_aa2Genome AAACGGAAGGTGGAGGTGGTTTCACCA-GCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG tacccacctcctgcgccctctaacctggttgacagcaggttctcttgcagAAACGGAAGGTTGAGGTGGTTTCACCAcACAAGCCTGGTGCCCAGTGAGACAGCTGCAGTCTCAGTTTTCCCTCAGgtaagtcttcgactctttcttcaagtactgaaatgttttgtcttcacttc Alignment from Spaln_nt2Genome AAACGGAAGGTGGAGGTGGTTTCACCAG-CAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG tacccacctcctgcgccctctaacctggttgacagcaggttctcttgcagAAACGGAAGGTTGAGGTGGTTTCACCACACAAGCCTGGTGCCCAGTGAGACAGCTGCAGTCTCAGTTTTCCCTCAGgtaagtcttcgactctttcttcaagtactgaaatgttttgtcttcacttc Alignment from Pairagon AAACGGAAGGTGGAGGTGGTTTCACCA-GCAACCCCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG tacccacctcctgcgccctctaacctggttgacagcaggttctcttgcagAAACGGAAGGTTGAGGTGGTTTCACCACACAAGCCTGGTGCCCAGTGAGACAGCTGCAGTCTCAGTTTTCCCTCAGgtaagtcttcgactctttcttcaagtactgaaatgttttgtcttcacttc Alignment from Exonerate_protein2genome AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCA-GTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG tacccacctcctgcgccctctaacctggttgacagcaggttctcttgcagAAACGGAAGGTTGAGGTGGTTTCACCACACAAGCCTGGTGCCCAGTGAGACAGCTGCAGTCTCAGTTTTCCCTCAGgtaagtcttcgactctttcttcaagtactgaaatgttttgtcttcacttc Alignment from Exonerate_coding2genome AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCA-GTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG tacccacctcctgcgccctctaacctggttgacagcaggttctcttgcagAAACGGAAGGTTGAGGTGGTTTCACCACACAAGCCTGGTGCCCAGTGAGACAGCTGCAGTCTCAGTTTTCCCTCAGgtaagtcttcgactctttcttcaagtactgaaatgttttgtcttcacttc Alignment from GeneWise AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCA-GTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG tacccacctcctgcgccctctaacctggttgacagcaggttctcttgcagAAACGGAAGGTTGAGGTGGTTTCACCACACAAGCCTGGTGCCCAGTGAGACAGCTGCAGTCTCAGTTTTCCCTCAGgtaagtcttcgactctttcttcaagtactgaaatgttttgtcttcacttc #### Kat5_ID1119_3 --> 2 - 1 Original Alignment ccCTGGCTGAGATCCTGAGC-GTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACt ctccagacctgccctgcttgttaaactctttctggacccctcttttgcagcaCTGGCTGAGATCCTAAGTCGTGAAGGACATAAGTGGCCGAAAGCTTTTCTATGTTTATTACATTGACtgtaagctcaagcctagatagaggggggttgctagataaggttaaggaaac Alignment from CESAR ccCTGGCTGAGATCCTGAGC-GTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACt ctccagacctgccctgcttgttaaactctttctggacccctcttttgcagcaCTGGCTGAGATCCTAAGTCGTGAAGGACATAAGTGGCCGAAAGCTTTTCTATGTTTATTACATTGACtgtaagctcaagcctagatagaggggggttgctagataaggttaaggaaac Alignment from Spaln_aa2Genome CCCTGGCTGAGATCCTGAGC-GTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT ctccagacctgccctgcttgttaaactctttctggacccctcttttgcagCACTGGCTGAGATCCTAAGTcGTGAAGGACATAAGTGGCCGAAAGCTTTTCTATGTTTATTACATTGACTgtaagctcaagcctagatagaggggggttgctagataaggttaaggaaac Alignment from Spaln_nt2Genome CCCTGGCTGAGATCCTGAG-CGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT ctccagacctgccctgcttgttaaactctttctggacccctcttttgcagCACTGGCTGAGATCCTAAGTCGTGAAGGACATAAGTGGCCGAAAGCTTTTCTATGTTTATTACATTGACTgtaagctcaagcctagatagaggggggttgctagataaggttaaggaaac Alignment from Pairagon CCCTGGCTGAGATCCTGAG-CGTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT ctccagacctgccctgcttgttaaactctttctggacccctcttttgcagCACTGGCTGAGATCCTAAGTCGTGAAGGACATAAGTGGCCGAAAGCTTTTCTATGTTTATTACATTGACTgtaagctcaagcctagatagaggggggttgctagataaggttaaggaaac Alignment from Exonerate_protein2genome CCCTGGCTGAGATCCTGAGC-GTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT ctccagacctgccctgcttgttaaactctttctggacccctcttttgcagCACTGGCTGAGATCCTAAGTCGTGAAGGACATAAGTGGCCGAAAGCTTTTCTATGTTTATTACATTGACTgtaagctcaagcctagatagaggggggttgctagataaggttaaggaaac Alignment from Exonerate_coding2genome CCCTGGCTGAGATCCTGAGC-GTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT ctccagacctgccctgcttgttaaactctttctggacccctcttttgcagCACTGGCTGAGATCCTAAGTCGTGAAGGACATAAGTGGCCGAAAGCTTTTCTATGTTTATTACATTGACTgtaagctcaagcctagatagaggggggttgctagataaggttaaggaaac Alignment from GeneWise --GTGAAGGACATCAGTGGCCGAAAGCTTTTCTATGTCCATTACATTGACT ctccagacctgccctgcttgttaaactctttctggacccctcttttgcagcactggctgagatcctaagTCGTGAAGGACATAAGTGGCCGAAAGCTTTTCTATGTTTATTACATTGACTgtaagctcaagcctagatagaggggggttgctagataaggttaaggaaac #### Kazald1_ID9301_3 --> 0 - 1 Original Alignment TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACA-GTGCTCACACCAg ggagcaggacttctgcaaataactttcccattgtattttctacattttagTTCAGGGGTGGACCACAAAAATTCGAAGTGACCAGTTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGTTGCCTCACCCGAAATGCTCTTGGCCAAGCTGAAGCCTCTGCAACCCTGACACGTACTCACACCAggtgagtattagcactgggtgctaagatgagtcatgatttgggctcttaga Alignment from CESAR TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACA-GTGCTCACACCAg ggagcaggacttctgcaaataactttcccattgtattttctacattttagTTCAGGGGTGGACCACAAAAATTCGAAGTGACCAGTTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGTTGCCTCACCCGAAATGCTCTTGGCCAAGCTGAAGCCTCTGCAACCCTGACACGTACTCACACCAggtgagtattagcactgggtgctaagatgagtcatgatttgggctcttaga Alignment from Spaln_aa2Genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACA-GTGCTCACACCAG ggagcaggacttctgcaaataactttcccattgtattttctacattttagTTCAGGGGTGGACCACAAAAATTCGAAGTGACCAGTTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGTTGCCTCACCCGAAATGCTCTTGGCCAAGCTGAAGCCTCTGCAACCCTGACAcGTACTCACACCAGgtgagtattagcactgggtgctaagatgagtcatgatttgggctcttaga Alignment from Spaln_nt2Genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACA-GTGCTCACACCAG ggagcaggacttctgcaaataactttcccattgtattttctacattttagTTCAGGGGTGGACCACAAAAATTCGAAGTGACCAGTTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGTTGCCTCACCCGAAATGCTCTTGGCCAAGCTGAAGCCTCTGCAACCCTGACACGTACTCACACCAGgtgagtattagcactgggtgctaagatgagtcatgatttgggctcttaga Alignment from Pairagon TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACA-GTGCTCACACCAG ggagcaggacttctgcaaataactttcccattgtattttctacattttagTTCAGGGGTGGACCACAAAAATTCGAAGTGACCAGTTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGTTGCCTCACCCGAAATGCTCTTGGCCAAGCTGAAGCCTCTGCAACCCTGACACGTACTCACACCAGgtgagtattagcactgggtgctaagatgagtcatgatttgggctcttaga Alignment from Exonerate_protein2genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACA-GTGCTCACACCAG ggagcaggacttctgcaaataactttcccattgtattttctacattttagTTCAGGGGTGGACCACAAAAATTCGAAGTGACCAGTTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGTTGCCTCACCCGAAATGCTCTTGGCCAAGCTGAAGCCTCTGCAACCCTGACACGTACTCACACCAGgtgagtattagcactgggtgctaagatgagtcatgatttgggctcttaga Alignment from Exonerate_coding2genome TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACA-GTGCTCACACCAG ggagcaggacttctgcaaataactttcccattgtattttctacattttagTTCAGGGGTGGACCACAAAAATTCGAAGTGACCAGTTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGTTGCCTCACCCGAAATGCTCTTGGCCAAGCTGAAGCCTCTGCAACCCTGACACGTACTCACACCAGgtgagtattagcactgggtgctaagatgagtcatgatttgggctcttaga Alignment from GeneWise TTTAGGGGTGGACCTCAGAAGTTTGAGGTGACTGGCTGGCTACAGATTCAAGCTTTGCGCCCTAGTGATGAGGGCACCTACCGTTGCCTTGCCCGGAATGCTCTGGGCCAAGCGGAAGCTTCTGCAACCCTCACAG ggagcaggacttctgcaaataactttcccattgtattttctacattttagTTCAGGGGTGGACCACAAAAATTCGAAGTGACCAGTTCACTACAGATTCAGGCTTTGCACCATAGTGATGAAGGCACTTACCGTTGCCTCACCCGAAATGCTCTTGGCCAAGCTGAAGCCTCTGCAACCCTGACACgtactcacaccaggtgagtattagcactgggtgctaagatgagtcatgatttgggctcttaga #### Kcnip2_ID9603_9 --> 0 - 0 Original Alignment AAGATGGACAGA-AACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG tgaggaaaggtttcactcaactattcatgatgctgtttccacttccacagAAGATGGACAGACAACAAGGATGGTGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAGgtaataaaatgagcaaacaggagtgggaggtggggtgggacatcaggtct Alignment from CESAR AAGATGGACAGA-AACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG tgaggaaaggtttcactcaactattcatgatgctgtttccacttccacagAAGATGGACAGACAACAAGGATGGTGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAGgtaataaaatgagcaaacaggagtgggaggtggggtgggacatcaggtct Alignment from Spaln_aa2Genome AAGATGGACAGA-AACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG tgaggaaaggtttcactcaactattcatgatgctgtttccacttccacagAAGATGGACAGAcAACAAGGATGGTGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAGgtaataaaatgagcaaacaggagtgggaggtggggtgggacatcaggtct Alignment from Spaln_nt2Genome AAGATGGACAGA-AACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG tgaggaaaggtttcactcaactattcatgatgctgtttccacttccacagAAGATGGACAGACAACAAGGATGGTGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAGgtaataaaatgagcaaacaggagtgggaggtggggtgggacatcaggtct Alignment from Pairagon AAGATGGACAGA-AACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG tgaggaaaggtttcactcaactattcatgatgctgtttccacttccacagAAGATGGACAGACAACAAGGATGGTGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAGgtaataaaatgagcaaacaggagtgggaggtggggtgggacatcaggtct Alignment from Exonerate_protein2genome AAGATGGACAGA-AACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG tgaggaaaggtttcactcaactattcatgatgctgtttccacttccacagAAGATGGACAGACAACAAGGATGGTGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAGgtaataaaatgagcaaacaggagtgggaggtggggtgggacatcaggtct Alignment from Exonerate_coding2genome AAGATGGACAGA-AACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG tgaggaaaggtttcactcaactattcatgatgctgtttccacttccacagAAGATGGACAGACAACAAGGATGGTGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAGgtaataaaatgagcaaacaggagtgggaggtggggtgggacatcaggtct Alignment from GeneWise ----GACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAG tgaggaaaggtttcactcaactattcatgatgctgtttccacttccacagaagATGGACAGACAACAAGGATGGTGTGGTGACCATTGAGGAATTCATTGAGTCTTGTCAACAGgtaataaaatgagcaaacaggagtgggaggtggggtgggacatcaggtct #### Kcnip2_ID9604_8 --> 0 - 0 Original Alignment GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCC-CTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ttaacctcaactagtttgctctttagagacattgtctttattatttttagGAAATGATTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCGCCTCCGGGAGGAAGCCCCAAGGGAACACGTGGAGAGCTTCTTCCAAgtacctgggttgactttttgattaatgagatatgtctagtctagtagtca Alignment from CESAR GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCC-CTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ttaacctcaactagtttgctctttagagacattgtctttattatttttagGAAATGATTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCGCCTCCGGGAGGAAGCCCCAAGGGAACACGTGGAGAGCTTCTTCCAAgtacctgggttgactttttgattaatgagatatgtctagtctagtagtca Alignment from Spaln_aa2Genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCC-CTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ttaacctcaactagtttgctctttagagacattgtctttattatttttagGAAATGATTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCGcCTCCGGGAGGAAGCCCCAAGGGAACACGTGGAGAGCTTCTTCCAAgtacctgggttgactttttgattaatgagatatgtctagtctagtagtca Alignment from Spaln_nt2Genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGC-CCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ttaacctcaactagtttgctctttagagacattgtctttattatttttagGAAATGATTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCGCCTCCGGGAGGAAGCCCCAAGGGAACACGTGGAGAGCTTCTTCCAAgtacctgggttgactttttgattaatgagatatgtctagtctagtagtca Alignment from Pairagon GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGC-CCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ttaacctcaactagtttgctctttagagacattgtctttattatttttagGAAATGATTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCGCCTCCGGGAGGAAGCCCCAAGGGAACACGTGGAGAGCTTCTTCCAAgtacctgggttgactttttgattaatgagatatgtctagtctagtagtca Alignment from Exonerate_protein2genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCC-CTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ttaacctcaactagtttgctctttagagacattgtctttattatttttagGAAATGATTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCGCCTCCGGGAGGAAGCCCCAAGGGAACACGTGGAGAGCTTCTTCCAAgtacctgggttgactttttgattaatgagatatgtctagtctagtagtca Alignment from Exonerate_coding2genome GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCTGCC-CTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ttaacctcaactagtttgctctttagagacattgtctttattatttttagGAAATGATTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCGCCTCCGGGAGGAAGCCCCAAGGGAACACGTGGAGAGCTTCTTCCAAgtacctgggttgactttttgattaatgagatatgtctagtctagtagtca Alignment from GeneWise GAAATGCTCGACATCATGAAGTCCATCTATGACATGATGGGCAAGTACACCTACCCT-GCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG ttaacctcaactagtttgctctttagagacattgtctttattatttttagGAAATGATTGACATCATGAAATCCATCTATGACATGATGGGCAAATACACCTACCCTGCGCCTCCGGGAGGAAGCCCCAAGGGAACACGTGGAGAGCTTCTTCCAAgtacctgggttgactttttgattaatgagatatgtctagtctagtagtca #### Kcnip2_ID9606_6 --> 2 - 0 Original Alignment acTCCAGCAACTACGCTACTTTTCTCTTCAATGCCTTTGACACCAACCATGATGGCTCT-GTCAGTTTTGAG ccggccaagggaaagtagatatgaaacctctactatttgtatgtgcttagacTCCAGCAACTATGCTACTTTCCTCTTCAATGCCTTTGACACCAACCATGATGGCTCTCGTCAGTTTTGAAgttgaccaggaaagatgatgcgctaaacaaactaagcctcttaacctgga Alignment from CESAR acTCCAGCAACTACGCTACTTTTCTCTTCAATGCCTTTGACACCAACCATGATGGCTCT-GTCAGTTTTGAG ccggccaagggaaagtagatatgaaacctctactatttgtatgtgcttagacTCCAGCAACTATGCTACTTTCCTCTTCAATGCCTTTGACACCAACCATGATGGCTCTCGTCAGTTTTGAAgttgaccaggaaagatgatgcgctaaacaaactaagcctcttaacctgga Alignment from Spaln_aa2Genome ACTCCAGCAACTACGCTACTTTTCTCTTCAATGCCTTTGACACCAACCATGATGGCTCT-GTCAGTTTTGAG ccggccaagggaaagtagatatgaaacctctactatttgtatgtgcttagACTCCAGCAACTATGCTACTTTCCTCTTCAATGCCTTTGACACCAACCATGATGGCTCTcGTCAGTTTTGAAgttgaccaggaaagatgatgcgctaaacaaactaagcctcttaacctgga Alignment from Spaln_nt2Genome ACTCCAGCAACTACGCTACTTTTCTCTTCAATGCCTTTGACACCAACCATGATGGCTCT-GTCAGTTTTGAG ccggccaagggaaagtagatatgaaacctctactatttgtatgtgcttagACTCCAGCAACTATGCTACTTTCCTCTTCAATGCCTTTGACACCAACCATGATGGCTCTCGTCAGTTTTGAAgttgaccaggaaagatgatgcgctaaacaaactaagcctcttaacctgga Alignment from Pairagon ACTCCAGCAACTACGCTACTTTTCTCTTCAATGCCTTTGACACCAACCATGATGGCTCT-GTCAGTTTTGAG ccggccaagggaaagtagatatgaaacctctactatttgtatgtgcttagACTCCAGCAACTATGCTACTTTCCTCTTCAATGCCTTTGACACCAACCATGATGGCTCTCGTCAGTTTTGAAgttgaccaggaaagatgatgcgctaaacaaactaagcctcttaacctgga Alignment from Exonerate_protein2genome ACTCCAGCAACTACGCTACTTTTCTCTTCAATGCCTTTGACACCAACCATGATGGCTCT-GTCAGTTTTGAG ccggccaagggaaagtagatatgaaacctctactatttgtatgtgcttagACTCCAGCAACTATGCTACTTTCCTCTTCAATGCCTTTGACACCAACCATGATGGCTCTCGTCAGTTTTGAAgttgaccaggaaagatgatgcgctaaacaaactaagcctcttaacctgga Alignment from Exonerate_coding2genome ACTCCAGCAACTACGCTACTTTTCTCTTCAATGCCTTTGACACCAACCATGATGGCTCT-GTCAGTTTTGAG ccggccaagggaaagtagatatgaaacctctactatttgtatgtgcttagACTCCAGCAACTATGCTACTTTCCTCTTCAATGCCTTTGACACCAACCATGATGGCTCTCGTCAGTTTTGAAgttgaccaggaaagatgatgcgctaaacaaactaagcctcttaacctgga Alignment from GeneWise ACTCCAGCAACTACGCTACTTTTCTCTTCAATGCCTTTGACACCAACCATGATGGC-TCTGTCAGTTTTGAG ccggccaagggaaagtagatatgaaacctctactatttgtatgtgcttagACTCCAGCAACTATGCTACTTTCCTCTTCAATGCCTTTGACACCAACCATGATGGCTCTCGTCAGTTTTGAAgttgaccaggaaagatgatgcgctaaacaaactaagcctcttaacctgga #### Kcnip2_ID9607_5 --> 0 - 1 Original Alignment GAATGTCCCAGCGGAATTGTCAACGAGGAG-AACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAg atgtggtgggttagtccatgtttatttttctcatgccagctctcttccagGAATGTCCCAGTGGCATTGTCAATGAAAAGCAACTTCAAGCAAGTTTATTCACAGTTCTTTCCACAAGAGggtgagctggcaggcatccaagaaaactaacactgcccataggctgcacag Alignment from CESAR GAATGTCCCAGCGGAATTGTCAACGAGGAG-AACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAg atgtggtgggttagtccatgtttatttttctcatgccagctctcttccagGAATGTCCCAGTGGCATTGTCAATGAAAAGCAACTTCAAGCAAGTTTATTCACAGTTCTTTCCACAAGAGggtgagctggcaggcatccaagaaaactaacactgcccataggctgcacag Alignment from Spaln_aa2Genome GAATGTCCCAGCGGAATTGTCAACGAGGAG-AACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAG atgtggtgggttagtccatgtttatttttctcatgccagctctcttccagGAATGTCCCAGTGGCATTGTCAATGAAAAGcAACTTCAAGCAAGTTTATTCACAGTTCTTTCCACAAGAGGgtgagctggcaggcatccaagaaaactaacactgcccataggctgcacag Alignment from Spaln_nt2Genome GAATGTCCCAGCGGAATTGTCAACGAGGAG-AACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAG atgtggtgggttagtccatgtttatttttctcatgccagctctcttccagGAATGTCCCAGTGGCATTGTCAATGAAAAGCAACTTCAAGCAAGTTTATTCACAGTTCTTTCCACAAGAGGgtgagctggcaggcatccaagaaaactaacactgcccataggctgcacag Alignment from Pairagon GAATGTCCCAGCGGAATTGTCAACGAGGAG-AACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAG atgtggtgggttagtccatgtttatttttctcatgccagctctcttccagGAATGTCCCAGTGGCATTGTCAATGAAAAGCAACTTCAAGCAAGTTTATTCACAGTTCTTTCCACAAGAGGgtgagctggcaggcatccaagaaaactaacactgcccataggctgcacag Alignment from Exonerate_protein2genome GAATGTCCCAGCGGAATTGTCAACGAGGAG-AACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAG atgtggtgggttagtccatgtttatttttctcatgccagctctcttccagGAATGTCCCAGTGGCATTGTCAATGAAAAGCAACTTCAAGCAAGTTTATTCACAGTTCTTTCCACAAGAGGgtgagctggcaggcatccaagaaaactaacactgcccataggctgcacag Alignment from Exonerate_coding2genome GAATGTCCCAGCGGAATTGTCAACGAGGAG-AACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAG atgtggtgggttagtccatgtttatttttctcatgccagctctcttccagGAATGTCCCAGTGGCATTGTCAATGAAAAGCAACTTCAAGCAAGTTTATTCACAGTTCTTTCCACAAGAGGgtgagctggcaggcatccaagaaaactaacactgcccataggctgcacag Alignment from GeneWise GAATGTCCCAGCGGAATTGTCAACGAG-GAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGAG atgtggtgggttagtccatgtttatttttctcatgccagctctcttccagGAATGTCCCAGTGGCATTGTCAATGAAAAGCAACTTCAAGCAAGTTTATTCACAGTTCTTTCCACAAGAGGgtgagctggcaggcatccaagaaaactaacactgcccataggctgcacag #### Kif20b_ID7002_7 --> 2 - 1 Original Alignment gaCACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTAT-TCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAg ggaaagtgacaaacattgcagtcaaagtttctgtatgtttttttccacaggaCACTTTACAAATTCTCTAACTATCCCAGAGTTTGAAGAACCTGTGAACAGG---------TCCAGTCTAAATGTGGATAATATAAAGTATCTCTGTGTGGGTCTCTTTCTTTGAAATTTACAACAAAAGCATTTATGATTTGTTTGTGCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTGCGAATTTCCCAGGATATAAAGGGGTATTCTTTTATAAAAggtgagctagtgaccgtcttatgaaagaagcagtgtactttctaaatcttt Alignment from CESAR gaCACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTAT-TCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAg ggaaagtgacaaacattgcagtcaaagtttctgtatgtttttttccacaggaCACTTTACAAATTCTCTAACTATCCCAGAGTTTGAAGAACCTGTGAAC---------AGGTCCAGTCTAAATGTGGATAATATAAAGTATCTCTGTGTGGGTCTCTTTCTTTGAAATTTACAACAAAAGCATTTATGATTTGTTTGTGCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTGCGAATTTCCCAGGATATAAAGGGGTATTCTTTTATAAAAggtgagctagtgaccgtcttatgaaagaagcagtgtactttctaaatcttt Alignment from Spaln_aa2Genome GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTAT-TCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG ggaaagtgacaaacattgcagtcaaagtttctgtatgtttttttccacagGACACTTTACAAATTCTCTAACTATCCCAGAGTTTGAAGAACCTGTGAAC---------AGGTCCAGTCTAAATGTGGATAATATAAAGTATcTCTGTGTGGGTCTCTTTCTTTGAAATTTACAACAAAAGCATTTATGATTTGTTTGTGCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTGCGAATTTCCCAGGATATAAAGGGGTATTCTTTTATAAAAGgtgagctagtgaccgtcttatgaaagaagcagtgtactttctaaatcttt Alignment from Spaln_nt2Genome GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTAT-TCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG ggaaagtgacaaacattgcagtcaaagtttctgtatgtttttttccacagGACACTTTACAAATTCTCTAACTATCCCAGAGTTTGAAGAACCTGTGA---------ACAGGTCCAGTCTAAATGTGGATAATATAAAGTATCTCTGTGTGGGTCTCTTTCTTTGAAATTTACAACAAAAGCATTTATGATTTGTTTGTGCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTGCGAATTTCCCAGGATATAAAGGGGTATTCTTTTATAAAAGgtgagctagtgaccgtcttatgaaagaagcagtgtactttctaaatcttt Alignment from Pairagon GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTAT-TCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG ggaaagtgacaaacattgcagtcaaagtttctgtatgtttttttccacagGACACTTTACAAATTCTCTAACTATCCCAGAGTTTGAAGAACCTGTGAACAG---------GTCCAGTCTAAATGTGGATAATATAAAGTATCTCTGTGTGGGTCTCTTTCTTTGAAATTTACAACAAAAGCATTTATGATTTGTTTGTGCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTGCGAATTTCCCAGGATATAAAGGGGTATTCTTTTATAAAAGgtgagctagtgaccgtcttatgaaagaagcagtgtactttctaaatcttt Alignment from Exonerate_protein2genome GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTAT-TCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG ggaaagtgacaaacattgcagtcaaagtttctgtatgtttttttccacagGACACTTTACAAATTCTCTAACTATCCCAGAGTTTGAAGAACCTGTGAAC---------AGGTCCAGTCTAAATGTGGATAATATAAAGTATCTCTGTGTGGGTCTCTTTCTTTGAAATTTACAACAAAAGCATTTATGATTTGTTTGTGCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTGCGAATTTCCCAGGATATAAAGGGGTATTCTTTTATAAAAGgtgagctagtgaccgtcttatgaaagaagcagtgtactttctaaatcttt Alignment from Exonerate_coding2genome GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTAT-TCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG ggaaagtgacaaacattgcagtcaaagtttctgtatgtttttttccacagGACACTTTACAAATTCTCTAACTATCCCAGAGTTTGAAGAACCTGTGAAC---------AGGTCCAGTCTAAATGTGGATAATATAAAGTATCTCTGTGTGGGTCTCTTTCTTTGAAATTTACAACAAAAGCATTTATGATTTGTTTGTGCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTGCGAATTTCCCAGGATATAAAGGGGTATTCTTTTATAAAAGgtgagctagtgaccgtcttatgaaagaagcagtgtactttctaaatcttt Alignment from GeneWise GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTAT-TCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG ggaaagtgacaaacattgcagtcaaagtttctgtatgtttttttccacagGACACTTTACAAATTCTCTAACTATCCCAGAGTTTGAAGAACCTGTGAAC---------AGGTCCAGTCTAAATGTGGATAATATAAAGTATCTCTGTGTGGGTCTCTTTCTTTGAAATTTACAACAAAAGCATTTATGATTTGTTTGTGCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTGCGAATTTCCCAGGATATAAAGGGGTATTCTTTTATAAAAGgtgagctagtgaccgtcttatgaaagaagcagtgtactttctaaatcttt #### Kif20b_ID7008_13 --> 0 - 2 Original Alignment GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTA-ACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTaa ccaaagatgcaatcatagatgacttggagtgaccctgagcctgcccctagGAACTGTTGGATTTGATAGAAAAGTTGAATAAAAGATTAATAAATGAGAATCAAGAAAAATTACTCATTGGAACTTAAGATCCGAGAAGATGTTACACAGGAATTCACACAGTATTGGAGCCAACGGGAAGCTGATTTTaagtgagttaatcctttgttatatcctggcaatgatttagacttgttctttt Alignment from CESAR GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTA-ACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTaa ccaaagatgcaatcatagatgacttggagtgaccctgagcctgcccctagGAACTGTTGGATTTGATAGAAAAGTTGAATAAAAGATTAATAAATGAGAATCAAGAAAAATTACTCATTGGAACTTAAGATCCGAGAAGATGTTACACAGGAATTCACACAGTATTGGAGCCAACGGGAAGCTGATTTTaagtgagttaatcctttgttatatcctggcaatgatttagacttgttctttt Alignment from Spaln_aa2Genome GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTA-ACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAA ccaaagatgcaatcatagatgacttggagtgaccctgagcctgcccctagGAACTGTTGGATTTGATAGAAAAGTTGAATAAAAGATTAATAAATGAGAATCAAGAAAAATTAcTCATTGGAACTTAAGATCCGAGAAGATGTTACACAGGAATTCACACAGTATTGGAGCCAACGGGAAGCTGATTTTAAgtgagttaatcctttgttatatcctggcaatgatttagacttgttctttt Alignment from Spaln_nt2Genome GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAA-CATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAA ccaaagatgcaatcatagatgacttggagtgaccctgagcctgcccctagGAACTGTTGGATTTGATAGAAAAGTTGAATAAAAGATTAATAAATGAGAATCAAGAAAAATTACTCATTGGAACTTAAGATCCGAGAAGATGTTACACAGGAATTCACACAGTATTGGAGCCAACGGGAAGCTGATTTTAAgtgagttaatcctttgttatatcctggcaatgatttagacttgttctttt Alignment from Pairagon GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTAA-CATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAA ccaaagatgcaatcatagatgacttggagtgaccctgagcctgcccctagGAACTGTTGGATTTGATAGAAAAGTTGAATAAAAGATTAATAAATGAGAATCAAGAAAAATTACTCATTGGAACTTAAGATCCGAGAAGATGTTACACAGGAATTCACACAGTATTGGAGCCAACGGGAAGCTGATTTTAAgtgagttaatcctttgttatatcctggcaatgatttagacttgttctttt Alignment from Exonerate_protein2genome GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTA-ACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAA ccaaagatgcaatcatagatgacttggagtgaccctgagcctgcccctagGAACTGTTGGATTTGATAGAAAAGTTGAATAAAAGATTAATAAATGAGAATCAAGAAAAATTACTCATTGGAACTTAAGATCCGAGAAGATGTTACACAGGAATTCACACAGTATTGGAGCCAACGGGAAGCTGATTTTAAgtgagttaatcctttgttatatcctggcaatgatttagacttgttctttt Alignment from Exonerate_coding2genome GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTA-ACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAA ccaaagatgcaatcatagatgacttggagtgaccctgagcctgcccctagGAACTGTTGGATTTGATAGAAAAGTTGAATAAAAGATTAATAAATGAGAATCAAGAAAAATTACTCATTGGAACTTAAGATCCGAGAAGATGTTACACAGGAATTCACACAGTATTGGAGCCAACGGGAAGCTGATTTTAAgtgagttaatcctttgttatatcctggcaatgatttagacttgttctttt Alignment from GeneWise GAACTGTTGGATTTAATAGAAAAGTTGAATAAAAGACTAATAAATGAAAATAAAGAAAAATTA-ACATTGGAACTTAAAATCCGAGAAGAAGTTACACAGGAATTCACTCAGTATTGGAGCCAACGGGAAGCCGATTTTAA ccaaagatgcaatcatagatgacttggagtgaccctgagcctgcccctagGAACTGTTGGATTTGATAGAAAAGTTGAATAAAAGATTAATAAATGAGAATCAAGAAAAATTACTCATTGGAACTTAAGATCCGAGAAGATGTTACACAGGAATTCACACAGTATTGGAGCCAACGGGAAGCTGATTTTAAgtgagttaatcctttgttatatcctggcaatgatttagacttgttctttt #### Klc2_ID853_13 --> 0 - 2 Original Alignment GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGA-CGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTag ggtgagcggtaaggctaccatgaatggattcctcggcctcccatttctagGATGGCAGTGGCTCCCTTCAGTGCAGTGGATCCTTTGGGAAACTCCGAGATGCTCTGAGACCGTAGCAGTGAAATGCTTGTAAGGAAGCTGCAGGGAGGAGGCCCACAGGAGCCCTCTAATTCTaggtgagtcatcagctctcccttcattctgttaacatactattgatcatgag Alignment from CESAR GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGA-CGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTag ggtgagcggtaaggctaccatgaatggattcctcggcctcccatttctagGATGGCAGTGGCTCCCTTCAGTGCAGTGGATCCTTTGGGAAACTCCGAGATGCTCTGAGACCGTAGCAGTGAAATGCTTGTAAGGAAGCTGCAGGGAGGAGGCCCACAGGAGCCCTCTAATTCTaggtgagtcatcagctctcccttcattctgttaacatactattgatcatgag Alignment from Spaln_aa2Genome GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGA-CGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG ggtgagcggtaaggctaccatgaatggattcctcggcctcccatttctagGATGGCAGTGGCTCCCTTCAGTGCAGTGGATCCTTTGGGAAACTCCGAGATGCTCTGAGAcCGTAGCAGTGAAATGCTTGTAAGGAAGCTGCAGGGAGGAGGCCCACAGGAGCCCTCTAATTCTAGgtgagtcatcagctctcccttcattctgttaacatactattgatcatgag Alignment from Spaln_nt2Genome GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGAC-GCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG ggtgagcggtaaggctaccatgaatggattcctcggcctcccatttctagGATGGCAGTGGCTCCCTTCAGTGCAGTGGATCCTTTGGGAAACTCCGAGATGCTCTGAGACCGTAGCAGTGAAATGCTTGTAAGGAAGCTGCAGGGAGGAGGCCCACAGGAGCCCTCTAATTCTAGgtgagtcatcagctctcccttcattctgttaacatactattgatcatgag Alignment from Pairagon GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGA-CGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG ggtgagcggtaaggctaccatgaatggattcctcggcctcccatttctagGATGGCAGTGGCTCCCTTCAGTGCAGTGGATCCTTTGGGAAACTCCGAGATGCTCTGAGACCGTAGCAGTGAAATGCTTGTAAGGAAGCTGCAGGGAGGAGGCCCACAGGAGCCCTCTAATTCTAGgtgagtcatcagctctcccttcattctgttaacatactattgatcatgag Alignment from Exonerate_protein2genome GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGA-CGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG ggtgagcggtaaggctaccatgaatggattcctcggcctcccatttctagGATGGCAGTGGCTCCCTTCAGTGCAGTGGATCCTTTGGGAAACTCCGAGATGCTCTGAGACCGTAGCAGTGAAATGCTTGTAAGGAAGCTGCAGGGAGGAGGCCCACAGGAGCCCTCTAATTCTAGgtgagtcatcagctctcccttcattctgttaacatactattgatcatgag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GACGGCAGCGGCTCTCTGCGGCGCAGTGGCTCCTTTGGGAAGCTCCGGGATGCTCTGAGA-CGCAGCAGTGAGATGCTGGTGAGGAAGCTGCAGGGAGGGGGCCCACAGGAGCCCCCTAACTCTAG ggtgagcggtaaggctaccatgaatggattcctcggcctcccatttctagGATGGCAGTGGCTCCCTTCAGTGCAGTGGATCCTTTGGGAAACTCCGAGATGCTCTGAGACCGTAGCAGTGAAATGCTTGTAAGGAAGCTGCAGGGAGGAGGCCCACAGGAGCCCTCTAATTCTAGgtgagtcatcagctctcccttcattctgttaacatactattgatcatgag #### Klc2_ID855_11 --> 1 - 0 Original Alignment tCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGG-CGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tggaggggaagaccacagggtttacaataggtttttctttcttctgacagcCCTACAGTCAATACCAAATTGCGAAGCTTGGGTGCCCTGTACTGGCCGTGAGGGCAAACTGGAGGCTACACACACACTGGAAGACTGTGCAAGCCGGAGCTGCAAACAAgtagtactttcatcatggaggacggaaagtagggacctgcaagacttcat Alignment from CESAR tCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGG-CGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tggaggggaagaccacagggtttacaataggtttttctttcttctgacagcCCTACAGTCAATACCAAATTGCGAAGCTTGGGTGCCCTGTACTGGCCGTGAGGGCAAACTGGAGGCTACACACACACTGGAAGACTGTGCAAGCCGGAGCTGCAAACAAgtagtactttcatcatggaggacggaaagtagggacctgcaagacttcat Alignment from Spaln_aa2Genome TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTAC-CGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tggaggggaagaccacagggtttacaataggtttttctttcttctgacagCCCTACAGTCAATACCAAATTGCGAAGCTTGGGTGCCCTGTACtGGCCGTGAGGGCAAACTGGAGGCTACACACACACTGGAAGACTGTGCAAGCCGGAGCTGCAAACAAgtagtactttcatcatggaggacggaaagtagggacctgcaagacttcat Alignment from Spaln_nt2Genome TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGC-GCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tggaggggaagaccacagggtttacaataggtttttctttcttctgacagCCCTACAGTCAATACCAAATTGCGAAGCTTGGGTGCCCTGTACTGGCCGTGAGGGCAAACTGGAGGCTACACACACACTGGAAGACTGTGCAAGCCGGAGCTGCAAACAAgtagtactttcatcatggaggacggaaagtagggacctgcaagacttcat Alignment from Pairagon TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTACCGG-CGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAAC---------------------------------------------------- tggaggggaagaccacagggtttacaataggtttttctttcttctgacagCCCTACAGTCAATACCAAATTGCGAAGCTTGGGTGCCCTGTACTGGCCGTGAGGGCAAACTGGAGGCTACACACACACTGGAAGACTGTGCAAGCCGGAGCTGCAAACAAGTAGTACTTTCATCATGGAGGACGGAAAGTAGGGACCTGCAAGACTTCAT Alignment from Exonerate_protein2genome TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTAC-CGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tggaggggaagaccacagggtttacaataggtttttctttcttctgacagCCCTACAGTCAATACCAAATTGCGAAGCTTGGGTGCCCTGTACTGGCCGTGAGGGCAAACTGGAGGCTACACACACACTGGAAGACTGTGCAAGCCGGAGCTGCAAACAAgtagtactttcatcatggaggacggaaagtagggacctgcaagacttcat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TCCCACAGTCAACACCACTCTGCGAAGCTTGGGCGCCCTGTAC-CGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tggaggggaagaccacagggtttacaataggtttttctttcttctgacagCCCTACAGTCAATACCAAATTGCGAAGCTTGGGTGCCCTGTACTGGCCGTGAGGGCAAACTGGAGGCTACACACACACTGGAAGACTGTGCAAGCCGGAGCTGCAAACAAgtagtactttcatcatggaggacggaaagtagggacctgcaagacttcat #### Klc2_ID859_7 --> 0 - 0 Original Alignment GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAAC-CAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caagcagtagaattctggtaattctgaaactgttttatgtgtccctttagGTCCTTGGCAAGTTTCACCCAGATGTGGCTGAGCAGCTTAGCAACCTGGCCTTGCTATGCCAGAACCCAGGGCAAAGCTGAAGAGGTGGAATACTATTACCAGCGGGGCCTGAAGATCTATGCCACACGCCTTAGTCCTGAAGATCCCAATGTGGCAAAGACCAAGAACAACCTGgtatgttgtaatggtgtgggatgctgataaggaaggaagcagggacagat Alignment from CESAR GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAAC-CAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caagcagtagaattctggtaattctgaaactgttttatgtgtccctttagGTCCTTGGCAAGTTTCACCCAGATGTGGCTGAGCAGCTTAGCAACCTGGCCTTGCTATGCCAGAACCCAGGGCAAAGCTGAAGAGGTGGAATACTATTACCAGCGGGGCCTGAAGATCTATGCCACACGCCTTAGTCCTGAAGATCCCAATGTGGCAAAGACCAAGAACAACCTGgtatgttgtaatggtgtgggatgctgataaggaaggaagcagggacagat Alignment from Spaln_aa2Genome GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAACCAGGGC-AAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caagcagtagaattctggtaattctgaaactgttttatgtgtccctttagGTCCTTGGCAAGTTTCACCCAGATGTGGCTGAGCAGCTTAGCAACCTGGCCTTGCTATGCCAGAACCCAGGGcAAAGCTGAAGAGGTGGAATACTATTACCAGCGGGGCCTGAAGATCTATGCCACACGCCTTAGTCCTGAAGATCCCAATGTGGCAAAGACCAAGAACAACCTGgtatgttgtaatggtgtgggatgctgataaggaaggaagcagggacagat Alignment from Spaln_nt2Genome GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAA-CCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caagcagtagaattctggtaattctgaaactgttttatgtgtccctttagGTCCTTGGCAAGTTTCACCCAGATGTGGCTGAGCAGCTTAGCAACCTGGCCTTGCTATGCCAGAACCCAGGGCAAAGCTGAAGAGGTGGAATACTATTACCAGCGGGGCCTGAAGATCTATGCCACACGCCTTAGTCCTGAAGATCCCAATGTGGCAAAGACCAAGAACAACCTGgtatgttgtaatggtgtgggatgctgataaggaaggaagcagggacagat Alignment from Pairagon GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAA-CCAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caagcagtagaattctggtaattctgaaactgttttatgtgtccctttagGTCCTTGGCAAGTTTCACCCAGATGTGGCTGAGCAGCTTAGCAACCTGGCCTTGCTATGCCAGAACCCAGGGCAAAGCTGAAGAGGTGGAATACTATTACCAGCGGGGCCTGAAGATCTATGCCACACGCCTTAGTCCTGAAGATCCCAATGTGGCAAAGACCAAGAACAACCTGgtatgttgtaatggtgtgggatgctgataaggaaggaagcagggacagat Alignment from Exonerate_protein2genome GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAAC-CAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caagcagtagaattctggtaattctgaaactgttttatgtgtccctttagGTCCTTGGCAAGTTTCACCCAGATGTGGCTGAGCAGCTTAGCAACCTGGCCTTGCTATGCCAGAACCCAGGGCAAAGCTGAAGAGGTGGAATACTATTACCAGCGGGGCCTGAAGATCTATGCCACACGCCTTAGTCCTGAAGATCCCAATGTGGCAAAGACCAAGAACAACCTGgtatgttgtaatggtgtgggatgctgataaggaaggaagcagggacagat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTCCTGGGCAAGTTTCACCCAGATGTGGCCAAGCAGCTCAGCAACCTGGCCTTGCTGTGCCAGAAC-CAGGGCAAAGCTGAGGAGGTGGAATACTACTACCGGAGAGCCCTGGAGATCTATGCCACACGCCTTGGTCCTGATGACCCCAATGTGGCGAAGACCAAGAACAACCTG caagcagtagaattctggtaattctgaaactgttttatgtgtccctttagGTCCTTGGCAAGTTTCACCCAGATGTGGCTGAGCAGCTTAGCAACCTGGCCTTGCTATGCCAGAACCCAGGGCAAAGCTGAAGAGGTGGAATACTATTACCAGCGGGGCCTGAAGATCTATGCCACACGCCTTAGTCCTGAAGATCCCAATGTGGCAAAGACCAAGAACAACCTGgtatgttgtaatggtgtgggatgctgataaggaaggaagcagggacagat #### Klc2_ID860_6 --> 0 - 0 Original Alignment GTGGCTGCGACCCTCAACAATCTGGCTGTT-CTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG gattccttcagggccctgaatgaagacaacacctagtcctcgttctacagGTG------GCCCTCAATAATCTGGCTGTGCCTTTATGGCAAACGAGGTAAGTACCAGGAAGCTGAGCCACTATGCAAAAGGGCACTTGAAATCCGAGAGAAGgtaagttcaggtacgacagcatggcatgagtgccaagcaagcagtagaat Alignment from CESAR GTGGCTGCGACCCTCAACAATCTGGCTGTT-CTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG gattccttcagggccctgaatgaagacaacacctagtcctcgttctacagGTGGCC------CTCAATAATCTGGCTGTGCCTTTATGGCAAACGAGGTAAGTACCAGGAAGCTGAGCCACTATGCAAAAGGGCACTTGAAATCCGAGAGAAGgtaagttcaggtacgacagcatggcatgagtgccaagcaagcagtagaat Alignment from Spaln_aa2Genome GTGGCTGCGACCCTCAACAATCTGGCTGTT-CTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG gattccttcagggccctgaatgaagacaacacctagtcctcgttctacagGTGGCC------CTCAATAATCTGGCTGTGcCTTTATGGCAAACGAGGTAAGTACCAGGAAGCTGAGCCACTATGCAAAAGGGCACTTGAAATCCGAGAGAAGgtaagttcaggtacgacagcatggcatgagtgccaagcaagcagtagaat Alignment from Spaln_nt2Genome GCGACCCTCAACAATCTGGCTGTTC-TCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG gattccttcagggccctgaatgaagacaacacctagtcctcgttctacagGTGGCCCTCAATAATCTGGCTGTGCCTTTATGGCAAACGAGGTAAGTACCAGGAAGCTGAGCCACTATGCAAAAGGGCACTTGAAATCCGAGAGAAGgtaagttcaggtacgacagcatggcatgagtgccaagcaagcagtagaat Alignment from Pairagon GTGGCTGCGACCCTCAACAATCTGGCTGT-TCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG gattccttcagggccctgaatgaagacaacacctagtcctcgttctacagGTGG------CCCTCAATAATCTGGCTGTGCCTTTATGGCAAACGAGGTAAGTACCAGGAAGCTGAGCCACTATGCAAAAGGGCACTTGAAATCCGAGAGAAGgtaagttcaggtacgacagcatggcatgagtgccaagcaagcagtagaat Alignment from Exonerate_protein2genome GCTGCGACCCTCAACAATCTGGCTGTT-CTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG gattccttcagggccctgaatgaagacaacacctagtcctcgttctacagGTGGCC---CTCAATAATCTGGCTGTGCCTTTATGGCAAACGAGGTAAGTACCAGGAAGCTGAGCCACTATGCAAAAGGGCACTTGAAATCCGAGAGAAGgtaagttcaggtacgacagcatggcatgagtgccaagcaagcagtagaat Alignment from Exonerate_coding2genome gattccttcagggccctgaatgaagacaacacctagtcctcgttctacaggtggccctcaataatctggctgtgcctttatggcaaacgaggtaagtaccaggaagctgagccactatgcaaaagggcacttgaaatccgagagaaggtaagttcaggtacgacagcatggcatgagtgccaagcaagcagtagaat Alignment from GeneWise GTGGCTGCGACCCTCAACAATCTGGCT-GTTCTCTACGGCAAACGGGGCAAGTACAAAGAGGCTGAGCCACTGTGCAAGAGAGCACTGGAGATCCGGGAGAAG gattccttcagggccctgaatgaagacaacacctagtcctcgttctacagGTGGCC------CTCAATAATCTGGCTGTGCCTTTATGGCAAACGAGGTAAGTACCAGGAAGCTGAGCCACTATGCAAAAGGGCACTTGAAATCCGAGAGAAGgtaagttcaggtacgacagcatggcatgagtgccaagcaagcagtagaat #### Ldb1_ID9691_9 --> 0 - 1 Original Alignment CTCTGTGTGATACTAGAGCCCATGCAG-GAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCg caatccttcctctgttttagaggccaattcacacaccctccttttcgcagCTCTGTGTGATACTAGAACCCATGCAGCGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTggtattccccttgactaatcctgctaaaatagttgtggtccaacctccttc Alignment from CESAR CTCTGTGTGATACTAGAGCCCATGCAG-GAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCg caatccttcctctgttttagaggccaattcacacaccctccttttcgcagCTCTGTGTGATACTAGAACCCATGCAGCGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTggtattccccttgactaatcctgctaaaatagttgtggtccaacctccttc Alignment from Spaln_aa2Genome CTCTGTGTGATACTAGAGCCCATGCAG-GAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG caatccttcctctgttttagaggccaattcacacaccctccttttcgcagCTCTGTGTGATACTAGAACCCATGCAGcGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtattccccttgactaatcctgctaaaatagttgtggtccaacctccttc Alignment from Spaln_nt2Genome CTCTGTGTGATACTAGAGCCCATGCAG-GAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG caatccttcctctgttttagaggccaattcacacaccctccttttcgcagCTCTGTGTGATACTAGAACCCATGCAGCGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtattccccttgactaatcctgctaaaatagttgtggtccaacctccttc Alignment from Pairagon CTCTGTGTGATACTAGAGCCCATGCAG-GAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG caatccttcctctgttttagaggccaattcacacaccctccttttcgcagCTCTGTGTGATACTAGAACCCATGCAGCGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtattccccttgactaatcctgctaaaatagttgtggtccaacctccttc Alignment from Exonerate_protein2genome CTCTGTGTGATACTAGAGCCCATGCAG-GAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG caatccttcctctgttttagaggccaattcacacaccctccttttcgcagCTCTGTGTGATACTAGAACCCATGCAGCGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtattccccttgactaatcctgctaaaatagttgtggtccaacctccttc Alignment from Exonerate_coding2genome CTCTGTGTGATACTAGAGCCCATGCAG-GAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG caatccttcctctgttttagaggccaattcacacaccctccttttcgcagCTCTGTGTGATACTAGAACCCATGCAGCGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtattccccttgactaatcctgctaaaatagttgtggtccaacctccttc Alignment from GeneWise CTCTGTGTGATACTAGAGCCCATGCAG-GAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGCCTCTTCCAGAAGTGGCAGCGAATGGTAGCGCCTCCCG caatccttcctctgttttagaggccaattcacacaccctccttttcgcagCTCTGTGTGATACTAGAACCCATGCAGCGAACTTATGTCCCGCCACAAGACCTACAGCCTCAGCCCCCGAGACTGCCTCAAGACCTGTCTCTTCCAGAAGTGGCAGCGAATGGTAGCACCTCCTGgtattccccttgactaatcctgctaaaatagttgtggtccaacctccttc #### Ldb1_ID9693_7 --> 0 - 0 Original Alignment GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACAC-AGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC ttgtagtaaatgaccaaggccaaaggatacaaactctccttgctatgcagGTGTGTGTCGAAGGACGGTTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCGGCAACACCAGAGAACTTATCCCAAGAAGTATCCTGGCCATGCATgtaaggttgtgccagcacctgagataagggttggggagaccacttcttgg Alignment from CESAR GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACAC-AGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC ttgtagtaaatgaccaaggccaaaggatacaaactctccttgctatgcagGTGTGTGTCGAAGGACGGTTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCGGCAACACCAGAGAACTTATCCCAAGAAGTATCCTGGCCATGCATgtaaggttgtgccagcacctgagataagggttggggagaccacttcttgg Alignment from Spaln_aa2Genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACAC-AGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC ttgtagtaaatgaccaaggccaaaggatacaaactctccttgctatgcagGTGTGTGTCGAAGGACGGTTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCGGCAACACcAGAGAACTTATCCCAAGAAGTATCCTGGCCATGCATgtaaggttgtgccagcacctgagataagggttggggagaccacttcttgg Alignment from Spaln_nt2Genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACAC-AGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC ttgtagtaaatgaccaaggccaaaggatacaaactctccttgctatgcagGTGTGTGTCGAAGGACGGTTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCGGCAACACCAGAGAACTTATCCCAAGAAGTATCCTGGCCATGCATgtaaggttgtgccagcacctgagataagggttggggagaccacttcttgg Alignment from Pairagon GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACA-CAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC ttgtagtaaatgaccaaggccaaaggatacaaactctccttgctatgcagGTGTGTGTCGAAGGACGGTTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCGGCAACACCAGAGAACTTATCCCAAGAAGTATCCTGGCCATGCATgtaaggttgtgccagcacctgagataagggttggggagaccacttcttgg Alignment from Exonerate_protein2genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACAC-AGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC ttgtagtaaatgaccaaggccaaaggatacaaactctccttgctatgcagGTGTGTGTCGAAGGACGGTTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCGGCAACACCAGAGAACTTATCCCAAGAAGTATCCTGGCCATGCATgtaaggttgtgccagcacctgagataagggttggggagaccacttcttgg Alignment from Exonerate_coding2genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACAC-AGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC ttgtagtaaatgaccaaggccaaaggatacaaactctccttgctatgcagGTGTGTGTCGAAGGACGGTTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCGGCAACACCAGAGAACTTATCCCAAGAAGTATCCTGGCCATGCATgtaaggttgtgccagcacctgagataagggttggggagaccacttcttgg Alignment from GeneWise GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCACTTCAGCATCCGGCAACAC-AGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC ttgtagtaaatgaccaaggccaaaggatacaaactctccttgctatgcagGTGTGTGTCGAAGGACGGTTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACTTCAGCATCCGGCAACACCAGAGAACTTATCCCAAGAAGTATCCTGGCCATGCATgtaaggttgtgccagcacctgagataagggttggggagaccacttcttgg #### Ldb1_ID9697_3 --> 1 - 2 Original Alignment cCCAACTCCCATGTACCCACCTACA-TACCTGGAGCCTGGGATCgg agtcagttctctgttccatggtcacactaacagcattgtttcccttgcagcCCAACTCCCATGTACCCACCTACACTACCTGGAGCCTGGGATTgggtaggtggactgcattataccattaagtcttgtctctacatcatctgtcc Alignment from CESAR cCCAACTCCCATGTACCCACCTACA-TACCTGGAGCCTGGGATCgg agtcagttctctgttccatggtcacactaacagcattgtttcccttgcagcCCAACTCCCATGTACCCACCTACACTACCTGGAGCCTGGGATTgggtaggtggactgcattataccattaagtcttgtctctacatcatctgtcc Alignment from Spaln_aa2Genome agtcagttctctgttccatggtcacactaacagcattgtttcccttgcagcccaactcccatgtacccacctacactacctggagcctgggattgggtaggtggactgcattataccattaagtcttgtctctacatcatctgtcc Alignment from Spaln_nt2Genome agtcagttctctgttccatggtcacactaacagcattgtttcccttgcagcccaactcccatgtacccacctacactacctggagcctgggattgggtaggtggactgcattataccattaagtcttgtctctacatcatctgtcc Alignment from Pairagon CCCAACTCCCATGTACCCACCTACA-TACCTGGAGCCTGGGATCGG agtcagttctctgttccatggtcacactaacagcattgtttcccttgcagCCCAACTCCCATGTACCCACCTACACTACCTGGAGCCTGGGATTGGgtaggtggactgcattataccattaagtcttgtctctacatcatctgtcc Alignment from Exonerate_protein2genome CCCAACTCCCATGTACCCACCTACA-TACCTGGAGCCTGGGATCGG agtcagttctctgttccatggtcacactaacagcattgtttcccttgcagCCCAACTCCCATGTACCCACCTACACTACCTGGAGCCTGGGATTGGgtaggtggactgcattataccattaagtcttgtctctacatcatctgtcc Alignment from Exonerate_coding2genome CCCAACTCCCATGTACCCACCTACA-TACCTGGAGCCTGGGATCGG agtcagttctctgttccatggtcacactaacagcattgtttcccttgcagCCCAACTCCCATGTACCCACCTACACTACCTGGAGCCTGGGATTGGgtaggtggactgcattataccattaagtcttgtctctacatcatctgtcc Alignment from GeneWise agtcagttctctgttccatggtcacactaacagcattgtttcccttgcagcccaactcccatgtacccacctacactacctggagcctgggattgggtaggtggactgcattataccattaagtcttgtctctacatcatctgtcc #### Lgals12_ID2187_6 --> 0 - 0 Original Alignment CCCTTCCTGCTGTAT-AGCCCCAGGCTG ctgtgcccaagcaaatagtaaccatcctaacatttgctcatcctttatagTCCTTCTTGCTGTACCAGTCCCAGGCTAgtgagaaactcttaccccaggcctctcctgtaggtgcagggaaatcccat Alignment from CESAR CCCTTCCTGCTGTAT-AGCCCCAGGCTG ctgtgcccaagcaaatagtaaccatcctaacatttgctcatcctttatagTCCTTCTTGCTGTACCAGTCCCAGGCTAgtgagaaactcttaccccaggcctctcctgtaggtgcagggaaatcccat Alignment from Spaln_aa2Genome CCCTTCCTGCTGTATAGCCCCAGG ctgtgcccaagcaaatagtaaccatcctaacatttgctcatcctttatagTCCTTCTTGCTGTACCAGTCCCAGgctagtgagaaactcttaccccaggcctctcctgtaggtgcagggaaatcccat Alignment from Spaln_nt2Genome CCCTTCCTGCTGTAT-AGCCCCAGGCTG ctgtgcccaagcaaatagtaaccatcctaacatttgctcatcctttatagTCCTTCTTGCTGTACCAGTCCCAGGCTAgtgagaaactcttaccccaggcctctcctgtaggtgcagggaaatcccat Alignment from Pairagon CCCTTCCTGCTGTA-TAGCCCCAGGCTG ctgtgcccaagcaaatagtaaccatcctaacatttgctcatcctttatagTCCTTCTTGCTGTACCAGTCCCAGGCTAgtgagaaactcttaccccaggcctctcctgtaggtgcagggaaatcccat Alignment from Exonerate_protein2genome ctgtgcccaagcaaatagtaaccatcctaacatttgctcatcctttatagtccttcttgctgtaccagtcccaggctagtgagaaactcttaccccaggcctctcctgtaggtgcagggaaatcccat Alignment from Exonerate_coding2genome ctgtgcccaagcaaatagtaaccatcctaacatttgctcatcctttatagtccttcttgctgtaccagtcccaggctagtgagaaactcttaccccaggcctctcctgtaggtgcagggaaatcccat Alignment from GeneWise ctgtgcccaagcaaatagtaaccatcctaacatttgctcatcctttatagtccttcttgctgtaccagtcccaggctagtgagaaactcttaccccaggcctctcctgtaggtgcagggaaatcccat #### Lpxn_ID3473_6 --> 0 - 0 Original Alignment GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTC-GGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT tcagatatagtctgctacacagccctgtatgcacattttgtgtcctttagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACACTGTGCCTACTGTGCTACTCCCATCACAGATgtcagtgatgccccacaccaatagcacacatgcactaatggataatcacc Alignment from CESAR GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTC-GGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT tcagatatagtctgctacacagccctgtatgcacattttgtgtcctttagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACACTGTGCCTACTGTGCTACTCCCATCACAGATgtcagtgatgccccacaccaatagcacacatgcactaatggataatcatt Alignment from Spaln_aa2Genome GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTC-GGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT tcagatatagtctgctacacagccctgtatgcacattttgtgtcctttagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCcGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACACTGTGCCTACTGTGCTACTCCCATCACAGATgtcagtgatgccccacaccaatagcacacatgcactaatggataatcacc Alignment from Spaln_nt2Genome GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCT-CGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT tcagatatagtctgctacacagccctgtatgcacattttgtgtcctttagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACACTGTGCCTACTGTGCTACTCCCATCACAGATgtcagtgatgccccacaccaatagcacacatgcactaatggataatcacc Alignment from Pairagon GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCT-CGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT tcagatatagtctgctacacagccctgtatgcacattttgtgtcctttagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACACTGTGCCTACTGTGCTACTCCCATCACAGATgtcagtgatgccccacaccaatagcacacatgcactaatggataatcacc Alignment from Exonerate_protein2genome GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTC-GGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT tcagatatagtctgctacacagccctgtatgcacattttgtgtcctttagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACACTGTGCCTACTGTGCTACTCCCATCACAGATgtcagtgatgccccacaccaatagcacacatgcactaatggataatcacc Alignment from Exonerate_coding2genome GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTC-GGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT tcagatatagtctgctacacagccctgtatgcacattttgtgtcctttagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACACTGTGCCTACTGTGCTACTCCCATCACAGATgtcagtgatgccccacaccaatagcacacatgcactaatggataatcacc Alignment from GeneWise GTGATCCATGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAG-CTCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCAAAAGACTACCACCGCCTGTTCTCTCCACGCTGTGCCTACTGTGCTGCTCCCATCACAGAT tcagatatagtctgctacacagccctgtatgcacattttgtgtcctttagGTGATCCACGCTCTGGGGCAATCCTGGCACCCAGAGCACTTTGTCTGCACTCACTGCAAGGAGGAGCTCCGGCTCCAGTCCCTTCTTTGAGCGGAGTGGCCTGGCCTACTGCTCCAAAGACTACCACCGCCTGTTCTCTCCACACTGTGCCTACTGTGCTACTCCCATCACAGATgtcagtgatgccccacaccaatagcacacatgcactaatggataatcacc #### Ltbp3_ID1255_7 --> 2 - 1 Original Alignment ccGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTC-TGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAg tagaagagcaccagaaatgtggcagctccccatcctaacttcctctgcagctGACAAACCAGAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCACCCTCTGACCACACGTTTAACCCACCAGCTTCTGCTGTTGTAGTGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAggttctgtagaagctccttgggaatgacaggacaaacttgtgtaccaggcc Alignment from CESAR ccGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTC-TGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAg tagaagagcaccagaaatgtggcagctccccatcctaacttcctctgcagctGACAAACCAGAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCACCCTCTGACCACACGTTTAACCCACCAGCTTCTGCTGTTGTAGTGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAggttctgtagaagctccttgggaatgacaggacaaacttgtgtaccaggcc Alignment from Spaln_aa2Genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTC-TGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG tagaagagcaccagaaatgtggcagctccccatcctaacttcctctgcagCTGACAAACCAGAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCACCCTCTGACCACACGTTTAACCCACCAGCTTcTGCTGTTGTAGTGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAGgttctgtagaagctccttgggaatgacaggacaaacttgtgtaccaggcc Alignment from Spaln_nt2Genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGC-TCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG tagaagagcaccagaaatgtggcagctccccatcctaacttcctctgcagCTGACAAACCAGAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCACCCTCTGACCACACGTTTAACCCACCAGCTTCTGCTGTTGTAGTGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAGgttctgtagaagctccttgggaatgacaggacaaacttgtgtaccaggcc Alignment from Pairagon CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGC-TCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG tagaagagcaccagaaatgtggcagctccccatcctaacttcctctgcagCTGACAAACCAGAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCACCCTCTGACCACACGTTTAACCCACCAGCTTCTGCTGTTGTAGTGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAGgttctgtagaagctccttgggaatgacaggacaaacttgtgtaccaggcc Alignment from Exonerate_protein2genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTC-TGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG tagaagagcaccagaaatgtggcagctccccatcctaacttcctctgcagCTGACAAACCAGAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCACCCTCTGACCACACGTTTAACCCACCAGCTTCTGCTGTTGTAGTGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAGgttctgtagaagctccttgggaatgacaggacaaacttgtgtaccaggcc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAG-CTCTGCTGCTGTAGTGTGGGTAAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG tagaagagcaccagaaatgtggcagctccccatcctaacttcctctgcagCTGACAAACCAGAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCACCCTCTGACCACACGTTTAACCCACCAGCTTCTGCTGTTGTAGTGTTGGTAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAGgttctgtagaagctccttgggaatgacaggacaaacttgtgtaccaggcc #### Ltbp3_ID1258_10 --> 0 - 1 Original Alignment CCAGTGAGTGAGGAGCGATCG-GTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAg ggggaaggcttgtggtatcatcaggaggacttctttctatgttttcacagCCGGTGAGTGAAGAGCGCTCACGTGCAACAGAGCCATCCCACTACCACTACCTCACCTTCTCGGCCTTTCCTAggtattgaggtgggggggggtgagctaatcaggcaggggggggtgagctaa Alignment from CESAR CCAGTGAGTGAGGAGCGATCG-GTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAg ggggaaggcttgtggtatcatcaggaggacttctttctatgttttcacagCCGGTGAGTGAAGAGCGCTCACGTGCAACAGAGCCATCCCACTACCACTACCTCACCTTCTCGGCCTTTCCTAggtattgaggtgggggggggtgagctaatcaggcaggggggggtgagctaa Alignment from Spaln_aa2Genome CCAGTGAGTGAGGAGCGATCG-GTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG ggggaaggcttgtggtatcatcaggaggacttctttctatgttttcacagCCGGTGAGTGAAGAGCGCTCAcGTGCAACAGAGCCATCCCACTACCACTACCTCACCTTCTCGGCCTTTCCTAGgtattgaggtgggggggggtgagctaatcaggcaggggggggtgagctaa Alignment from Spaln_nt2Genome CCAGTGAGTGAGGAGCGATCG-GTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG ggggaaggcttgtggtatcatcaggaggacttctttctatgttttcacagCCGGTGAGTGAAGAGCGCTCACGTGCAACAGAGCCATCCCACTACCACTACCTCACCTTCTCGGCCTTTCCTAGgtattgaggtgggggggggtgagctaatcaggcaggggggggtgagctaa Alignment from Pairagon CCAGTGAGTGAGGAGCGATCG-GTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG ggggaaggcttgtggtatcatcaggaggacttctttctatgttttcacagCCGGTGAGTGAAGAGCGCTCACGTGCAACAGAGCCATCCCACTACCACTACCTCACCTTCTCGGCCTTTCCTAGgtattgaggtgggggggggtgagctaatcaggcaggggggggtgagctaa Alignment from Exonerate_protein2genome CCAGTGAGTGAGGAGCGATCG-GTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG ggggaaggcttgtggtatcatcaggaggacttctttctatgttttcacagCCGGTGAGTGAAGAGCGCTCACGTGCAACAGAGCCATCCCACTACCACTACCTCACCTTCTCGGCCTTTCCTAGgtattgaggtgggggggggtgagctaatcaggcaggggggggtgagctaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAGCGATCGGTGCAGCAGAGCCACCCCACTACCACCACCTCACCCCCCCGGCCTTACCCAG ggggaaggcttgtggtatcatcaggaggacttctttctatgttttcacagccggtgagtgaagAGCGCTCACGTGCAACAGAGCCATCCCACTACCACTACCTCACCTTCTCGGCCTTTCCTAGgtattgaggtgggggggggtgagctaatcaggcaggggggggtgagctaa #### Ltbp3_ID1262_14 --> 2 - 1 Original Alignment acCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCT-GGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAg gggctgttcctgttcttgaccccgccctctcttttcttttgctcccaaagacCTGAATGAGTGCACGAAGCCTCATCTGTGTGGCGATGGTGGCTTTTGCATCAACTTCCCTGGCCACTACACGTGCAACTGTTATCCTCGGCTACAGGCTCAAGGCCTCCAGACCACCCATCTGGGAAggtaagttgtcatcctattgaagcagcataattcccctccctggacttagg Alignment from CESAR acCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCT-GGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAg gggctgttcctgttcttgaccccgccctctcttttcttttgctcccaaagacCTGAATGAGTGCACGAAGCCTCATCTGTGTGGCGATGGTGGCTTTTGCATCAACTTCCCTGGCCACTACACGTGCAACTGTTATCCTCGGCTACAGGCTCAAGGCCTCCAGACCACCCATCTGGGAAggtaagttgtcatcctattgaagcagcataattcccctccctggacttagg Alignment from Spaln_aa2Genome ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCT-GGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG gggctgttcctgttcttgaccccgccctctcttttcttttgctcccaaagACCTGAATGAGTGCACGAAGCCTCATCTGTGTGGCGATGGTGGCTTTTGCATCAACTTCCCTGGCCACTACACGTGCAACTGTTATCCTcGGCTACAGGCTCAAGGCCTCCAGACCACCCATCTGGGAAGgtaagttgtcatcctattgaagcagcataattcccctccctggacttagg Alignment from Spaln_nt2Genome ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCT-GGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG gggctgttcctgttcttgaccccgccctctcttttcttttgctcccaaagACCTGAATGAGTGCACGAAGCCTCATCTGTGTGGCGATGGTGGCTTTTGCATCAACTTCCCTGGCCACTACACGTGCAACTGTTATCCTCGGCTACAGGCTCAAGGCCTCCAGACCACCCATCTGGGAAGgtaagttgtcatcctattgaagcagcataattcccctccctggacttagg Alignment from Pairagon ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCT-GGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG gggctgttcctgttcttgaccccgccctctcttttcttttgctcccaaagACCTGAATGAGTGCACGAAGCCTCATCTGTGTGGCGATGGTGGCTTTTGCATCAACTTCCCTGGCCACTACACGTGCAACTGTTATCCTCGGCTACAGGCTCAAGGCCTCCAGACCACCCATCTGGGAAGgtaagttgtcatcctattgaagcagcataattcccctccctggacttagg Alignment from Exonerate_protein2genome ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCT-GGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG gggctgttcctgttcttgaccccgccctctcttttcttttgctcccaaagACCTGAATGAGTGCACGAAGCCTCATCTGTGTGGCGATGGTGGCTTTTGCATCAACTTCCCTGGCCACTACACGTGCAACTGTTATCCTCGGCTACAGGCTCAAGGCCTCCAGACCACCCATCTGGGAAGgtaagttgtcatcctattgaagcagcataattcccctccctggacttagg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAACTGCTATCCT-GGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG gggctgttcctgttcttgaccccgccctctcttttcttttgctcccaaagACCTGAATGAGTGCACGAAGCCTCATCTGTGTGGCGATGGTGGCTTTTGCATCAACTTCCCTGGCCACTACACGTGCAACTGTTATCCTCGGCTACAGGCTCAAGGCCTCCAGACCACCCATCTGGGAAGgtaagttgtcatcctattgaagcagcataattcccctccctggacttagg #### Ltbp3_ID1263_15 --> 2 - 1 Original Alignment acATCGACGAGTGTCGCGAC-CCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTg acaccagatttgagtattacaccacccttttcttttgaattgttttctagacATTGACGAGTGTCATGACCCCTAGCACCTGCCCTGATGGCAAGTGTGAAAACAAACTTGGTAGCTTCAAGTGCATTGCCTGCCAGCCTGGCTACCGAAGCCAGGGGGGTGGGACATGTCGTggtgagtcaggtctaattccccctaaaggggtggcctgtcctggatagggt Alignment from CESAR acATCGACGAGTGTCGCGAC-CCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTg acaccagatttgagtattacaccacccttttcttttgaattgttttctagacATTGACGAGTGTCATGACCCCTAGCACCTGCCCTGATGGCAAGTGTGAAAACAAACTTGGTAGCTTCAAGTGCATTGCCTGCCAGCCTGGCTACCGAAGCCAGGGGGGTGGGACATGTCGTggtgagtcaggtctaattccccctaaaggggtggcctgtcctggatagggt Alignment from Spaln_aa2Genome ACATCGACGAGTGTCGCGAC-CCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG acaccagatttgagtattacaccacccttttcttttgaattgttttctagACATTGACGAGTGTCATGACcCCTAGCACCTGCCCTGATGGCAAGTGTGAAAACAAACTTGGTAGCTTCAAGTGCATTGCCTGCCAGCCTGGCTACCGAAGCCAGGGGGGTGGGACATGTCGTGgtgagtcaggtctaattccccctaaaggggtggcctgtcctggatagggt Alignment from Spaln_nt2Genome ACATCGACGAGTGTCGCGACCC-TAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG acaccagatttgagtattacaccacccttttcttttgaattgttttctagACATTGACGAGTGTCATGACCCCTAGCACCTGCCCTGATGGCAAGTGTGAAAACAAACTTGGTAGCTTCAAGTGCATTGCCTGCCAGCCTGGCTACCGAAGCCAGGGGGGTGGGACATGTCGTGgtgagtcaggtctaattccccctaaaggggtggcctgtcctggatagggt Alignment from Pairagon ACATCGACGAGTGTCGCGA-CCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG acaccagatttgagtattacaccacccttttcttttgaattgttttctagACATTGACGAGTGTCATGACCCCTAGCACCTGCCCTGATGGCAAGTGTGAAAACAAACTTGGTAGCTTCAAGTGCATTGCCTGCCAGCCTGGCTACCGAAGCCAGGGGGGTGGGACATGTCGTGgtgagtcaggtctaattccccctaaaggggtggcctgtcctggatagggt Alignment from Exonerate_protein2genome ACATCGACGAGTGTCGCGAC-CCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG acaccagatttgagtattacaccacccttttcttttgaattgttttctagACATTGACGAGTGTCATGACCCCTAGCACCTGCCCTGATGGCAAGTGTGAAAACAAACTTGGTAGCTTCAAGTGCATTGCCTGCCAGCCTGGCTACCGAAGCCAGGGGGGTGGGACATGTCGTGgtgagtcaggtctaattccccctaaaggggtggcctgtcctggatagggt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ACATCGACGAGTGTCGCGACCCT-AGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG acaccagatttgagtattacaccacccttttcttttgaattgttttctagACATTGACGAGTGTCATGACCCCTAGCACCTGCCCTGATGGCAAGTGTGAAAACAAACTTGGTAGCTTCAAGTGCATTGCCTGCCAGCCTGGCTACCGAAGCCAGGGGGGTGGGACATGTCGTGgtgagtcaggtctaattccccctaaaggggtggcctgtcctggatagggt #### Ltbp3_ID1270_22 --> 2 - 1 Original Alignment acATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGC-AAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGg caagtgatgtatagggccactgcgaacttcttgttccatctgttgtacagacATTGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTTTGTGAACACGCAGCCTGGCTATGAGTGCTACTGCCAAGCAGGGCTTCTATTACGATGGTAATCTGCTAGAGTGCGTGggtgagttagattatagtgctactcaaggaacagctgaacttccacctcac Alignment from CESAR acATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGC-AAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGg caagtgatgtatagggccactgcgaacttcttgttccatctgttgtacagacATTGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTTTGTGAACACGCAGCCTGGCTATGAGTGCTACTGCCAAGCAGGGCTTCTATTACGATGGTAATCTGCTAGAGTGCGTGggtgagttagattatagtgctactcaaggaacagctgaacttgggtctgtt Alignment from Spaln_aa2Genome ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGC-AAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG caagtgatgtatagggccactgcgaacttcttgttccatctgttgtacagACATTGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTTTGTGAACACGCAGCCTGGCTATGAGTGCTACTGCcAAGCAGGGCTTCTATTACGATGGTAATCTGCTAGAGTGCGTGGgtgagttagattatagtgctactcaaggaacagctgaacttccacctcac Alignment from Spaln_nt2Genome ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTG-CAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG caagtgatgtatagggccactgcgaacttcttgttccatctgttgtacagACATTGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTTTGTGAACACGCAGCCTGGCTATGAGTGCTACTGCCAAGCAGGGCTTCTATTACGATGGTAATCTGCTAGAGTGCGTGGgtgagttagattatagtgctactcaaggaacagctgaacttccacctcac Alignment from Pairagon ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTG-CAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG caagtgatgtatagggccactgcgaacttcttgttccatctgttgtacagACATTGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTTTGTGAACACGCAGCCTGGCTATGAGTGCTACTGCCAAGCAGGGCTTCTATTACGATGGTAATCTGCTAGAGTGCGTGGgtgagttagattatagtgctactcaaggaacagctgaacttccacctcac Alignment from Exonerate_protein2genome ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGC-AAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG caagtgatgtatagggccactgcgaacttcttgttccatctgttgtacagACATTGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTTTGTGAACACGCAGCCTGGCTATGAGTGCTACTGCCAAGCAGGGCTTCTATTACGATGGTAATCTGCTAGAGTGCGTGGgtgagttagattatagtgctactcaaggaacagctgaacttccacctcac Alignment from Exonerate_coding2genome ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGC-AAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG caagtgatgtatagggccactgcgaacttcttgttccatctgttgtacagACATTGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTTTGTGAACACGCAGCCTGGCTATGAGTGCTACTGCCAAGCAGGGCTTCTATTACGATGGTAATCTGCTAGAGTGCGTGGgtgagttagattatagtgctactcaaggaacagctgaacttccacctcac Alignment from GeneWise ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTACGAGTGCTACTGC-AAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTG--------------------------------------------------- caagtgatgtatagggccactgcgaacttcttgttccatctgttgtacagACATTGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTTTGTGAACACGCAGCCTGGCTATGAGTGCTACTGCCAAGCAGGGCTTCTATTACGATGGTAATCTGCTAGAGTGCGTGGGTGAGTTAGATTATAGTGCTACTCAAGGAACAGCTGAACTTCCACCTCAC #### Macrod1_ID2051_6 --> 2 - 0 Original Alignment atGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCC-ACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG aaaagtgaatgattgaaggatattgaaattttcttaacttcacatgccagatGTCATCCACACAGTGGGGCTCATTGCAGTGGGCCGACCACACTGCCAGTGAGGCAGCTGAACTCCACAGCTGTTATTTGAGCAGTCTGGATCTGCTGCTGGAGCACAGGTTGTGTCCAGTTgtaccgttcaagtggttgaagcgtcaactacaacataccagaatctctgg Alignment from CESAR atGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCC-ACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG aaaagtgaatgattgaaggatattgaaattttcttaacttcacatgccagatGTCATCCACACAGTGGGGCTCATTGCAGTGGGCCGACCACACTGCCAGTGAGGCAGCTGAACTCCACAGCTGTTATTTGAGCAGTCTGGATCTGCTGCTGGAGCACAGGTTGTGTCCAGTTgtaccgttcaagtggttgaagcgtcaactacaacataccagaatctctgg Alignment from Spaln_aa2Genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCC-ACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG aaaagtgaatgattgaaggatattgaaattttcttaacttcacatgccagATGTCATCCACACAGTGGGGCTCATTGCAGTGGGCCGACCAcACTGCCAGTGAGGCAGCTGAACTCCACAGCTGTTATTTGAGCAGTCTGGATCTGCTGCTGGAGCACAGGTTGTGTCCAGTTgtaccgttcaagtggttgaagcgtcaactacaacataccagaatctctgg Alignment from Spaln_nt2Genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACC-CACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG aaaagtgaatgattgaaggatattgaaattttcttaacttcacatgccagATGTCATCCACACAGTGGGGCTCATTGCAGTGGGCCGACCACACTGCCAGTGAGGCAGCTGAACTCCACAGCTGTTATTTGAGCAGTCTGGATCTGCTGCTGGAGCACAGGTTGTGTCCAGTTgtaccgttcaagtggttgaagcgtcaactacaacataccagaatctctgg Alignment from Pairagon ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACC-CACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG aaaagtgaatgattgaaggatattgaaattttcttaacttcacatgccagATGTCATCCACACAGTGGGGCTCATTGCAGTGGGCCGACCACACTGCCAGTGAGGCAGCTGAACTCCACAGCTGTTATTTGAGCAGTCTGGATCTGCTGCTGGAGCACAGGTTGTGTCCAGTTgtaccgttcaagtggttgaagcgtcaactacaacataccagaatctctgg Alignment from Exonerate_protein2genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCC-ACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG aaaagtgaatgattgaaggatattgaaattttcttaacttcacatgccagATGTCATCCACACAGTGGGGCTCATTGCAGTGGGCCGACCACACTGCCAGTGAGGCAGCTGAACTCCACAGCTGTTATTTGAGCAGTCTGGATCTGCTGCTGGAGCACAGGTTGTGTCCAGTTgtaccgttcaagtggttgaagcgtcaactacaacataccagaatctctgg Alignment from Exonerate_coding2genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCA--CTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTGGCTTTCCCGTGCATCTCCACAG aaaagtgaatgattgaaggatattgaaattttcttaacttcacatgccagATGTCATCCACACAGTGGGGCTCATTGCAGTGGGCCGA-CCACACTGCCAGTGAGGCAGCTGAACTCCACAGCTGTTATTTGAGCAGTCTGGATCTGCTGCTGGAGCACAGGTTGTGTCCAGTTGTACCGTTCAAGTGGTTGAAGCgtcaactacaacataccagaatctctgg Alignment from GeneWise ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCC-ACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCCTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG aaaagtgaatgattgaaggatattgaaattttcttaacttcacatgccagATGTCATCCACACAGTGGGGCTCATTGCAGTGGGCCGACCACACTGCCAGTGAGGCAGCTGAACTCCACAGCTGTTATTTGAGCAGTCTGGATCTGCTGCTGGAGCACAGGTTGTGTCCAGTTgtaccgttcaagtggttgaagcgtcaactacaacataccagaatctctgg #### Macrod1_ID2054_9 --> 0 - 1 Original Alignment GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAG-CGCCTTCCCCATTATTTCCCAGTAg gtaggccagttacagtccagcttaagctttctcccatctgcatcccacagGTGGATCGGCTCATCATCTGTGTGTTCTTGGAGAAGGATGAGGGCATTTACAGGGAACCGCCTTCCCCATTATTTCCCAGTAggtaagcacccattcctcctatgctcctggacatctgaaagtgctcacctc Alignment from CESAR GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAG-CGCCTTCCCCATTATTTCCCAGTAg gtaggccagttacagtccagcttaagctttctcccatctgcatcccacagGTGGATCGGCTCATCATCTGTGTGTTCTTGGAGAAGGATGAGGGCATTTACAGGGAACCGCCTTCCCCATTATTTCCCAGTAggtaagcacccattcctcctatgctcctggacatcttaattgtgtctgtct Alignment from Spaln_aa2Genome GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAG-CGCCTTCCCCATTATTTCCCAGTAG gtaggccagttacagtccagcttaagctttctcccatctgcatcccacagGTGGATCGGCTCATCATCTGTGTGTTCTTGGAGAAGGATGAGGGCATTTACAGGGAAcCGCCTTCCCCATTATTTCCCAGTAGgtaagcacccattcctcctatgctcctggacatctgaaagtgctcacctc Alignment from Spaln_nt2Genome GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAGC-GCCTTCCCCATTATTTCCCAGTAGCC gtaggccagttacagtccagcttaagctttctcccatctgcatcccacagGTGGATCGGCTCATCATCTGTGTGTTCTTGGAGAAGGATGAGGGCATTTACAGGGAACCGCCTTCCCCATTATTTCCCAGTAGGTaagcacccattcctcctatgctcctggacatctgaaagtgctcacctc Alignment from Pairagon GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAG-CGCCTTCCCCATTATTTCCCAGTAGCC gtaggccagttacagtccagcttaagctttctcccatctgcatcccacagGTGGATCGGCTCATCATCTGTGTGTTCTTGGAGAAGGATGAGGGCATTTACAGGGAACCGCCTTCCCCATTATTTCCCAGTAGGTaagcacccattcctcctatgctcctggacatctgaaagtgctcacctc Alignment from Exonerate_protein2genome GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAG-CGCCTTCCCCATTATTTCCCAGTA gtaggccagttacagtccagcttaagctttctcccatctgcatcccacagGTGGATCGGCTCATCATCTGTGTGTTCTTGGAGAAGGATGAGGGCATTTACAGGGAACCGCCTTCCCCATTATTTCCCAGTAggtaagcacccattcctcctatgctcctggacatctgaaagtgctcacctc Alignment from Exonerate_coding2genome GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGGGAG-CGCCTTCCCCATTATTTCCCAGTA gtaggccagttacagtccagcttaagctttctcccatctgcatcccacagGTGGATCGGCTCATCATCTGTGTGTTCTTGGAGAAGGATGAGGGCATTTACAGGGAACCGCCTTCCCCATTATTTCCCAGTAggtaagcacccattcctcctatgctcctggacatctgaaagtgctcacctc Alignment from GeneWise --------------------------------------GATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGCATTTACCGG-GAGCGCCTTCCCCATTATTTCCCAGTAGCC gtaggccagttacagTCCAGCTTAAGCTTTCTCCCATCTGCATCCCACAGGTGGATCGGCTCATCATCTGTGTGTTCTTGGAGAAGGATGAGGGCATTTACAGGGAACCGCCTTCCCCATTATTTCCCAGTAGGTaagcacccattcctcctatgctcctggacatctgaaagtgctcacctc #### Map3k11_ID1202_3 --> 1 - 1 Original Alignment cTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTG-CCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTg tagttcctcctgagttgtaggttcacatccccatgtcctttaatctatagtTTTGGAGTGTTGCTGTGGGAGCTGCTGACTGGGAAAGTGCCCATACCGAGGCATCGACTGTCTTGCTGTAGTCTATGGTGTGGCTGTAAACAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTggtgagggagatgaggttgtggagatgaaaggcaagccccccaacctggtg Alignment from CESAR cTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCC-TACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTg tagttcctcctgagttgtaggttcacatccccatgtcctttaatctatagtTTTGGAGTGTTGCTGTGGGAGCTGCTGACTGGGAAAGTGCCCATACCGAGGCATCGACTGTCTTGCTGTAGTCTATGGTGTGGCTGTAAACAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTggtgagggagatgaggttgtggagatgaaaggcaagccccccaacctggtg Alignment from Spaln_aa2Genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCC-TACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctcctgagttgtaggttcacatccccatgtcctttaatctatagTTTTGGAGTGTTGCTGTGGGAGCTGCTGACTGGGAAAGTGCCCaTACCGAGGCATCGACTGTCTTGCTGTAGTCTATGGTGTGGCTGTAAACAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtgagggagatgaggttgtggagatgaaaggcaagccccccaacctggtg Alignment from Spaln_nt2Genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCC-TACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctcctgagttgtaggttcacatccccatgtcctttaatctatagTTTTGGAGTGTTGCTGTGGGAGCTGCTGACTGGGAAAGTGCCCATACCGAGGCATCGACTGTCTTGCTGTAGTCTATGGTGTGGCTGTAAACAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtgagggagatgaggttgtggagatgaaaggcaagccccccaacctggtg Alignment from Pairagon CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTGCCC-TACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctcctgagttgtaggttcacatccccatgtcctttaatctatagTTTTGGAGTGTTGCTGTGGGAGCTGCTGACTGGGAAAGTGCCCATACCGAGGCATCGACTGTCTTGCTGTAGTCTATGGTGTGGCTGTAAACAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtgagggagatgaggttgtggagatgaaaggcaagccccccaacctggtg Alignment from Exonerate_protein2genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTG-CCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctcctgagttgtaggttcacatccccatgtcctttaatctatagTTTTGGAGTGTTGCTGTGGGAGCTGCTGACTGGGAAAGTGCCCATACCGAGGCATCGACTGTCTTGCTGTAGTCTATGGTGTGGCTGTAAACAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtgagggagatgaggttgtggagatgaaaggcaagccccccaacctggtg Alignment from Exonerate_coding2genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAGGTG-CCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctcctgagttgtaggttcacatccccatgtcctttaatctatagTTTTGGAGTGTTGCTGTGGGAGCTGCTGACTGGGAAAGTGCCCATACCGAGGCATCGACTGTCTTGCTGTAGTCTATGGTGTGGCTGTAAACAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtgagggagatgaggttgtggagatgaaaggcaagccccccaacctggtg Alignment from GeneWise CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAG-GTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG tagttcctcctgagttgtaggttcacatccccatgtcctttaatctatagTTTTGGAGTGTTGCTGTGGGAGCTGCTGACTGGGAAAGTGCCCATACCGAGGCATCGACTGTCTTGCTGTAGTCTATGGTGTGGCTGTAAACAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtgagggagatgaggttgtggagatgaaaggcaagccccccaacctggtg #### Map3k11_ID1204_5 --> 0 - 1 Original Alignment GAACTACTGAGCCGGGAG-GAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGg ctagataagttaacagataagttaacctgtcagtgctgtcatgctcacagGAACTACTTAGTCGAGAGCGAAGAATTGACATGGGCTGCATGTGTGCAATGGTCTCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACGATTGCCTGCACTAACACTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTCCAAGTGGAGCAAACTTCGAGCAAGAGATGGTGAAGAACGCATCAGCATGCCCTTGggtaagagctggggcttcaatgcctgcctgcaatttgctattgttggtgga Alignment from CESAR GAACTACTGAGCCGGGAG-GAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGg ctagataagttaacagataagttaacctgtcagtgctgtcatgctcacagGAACTACTTAGTCGAGAGCGAAGAATTGACATGGGCTGCATGTGTGCAATGGTCTCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACGATTGCCTGCACTAACACTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTCCAAGTGGAGCAAACTTCGAGCAAGAGATGGTGAAGAACGCATCAGCATGCCCTTGggtaagagctggggcttcaatgcctgcctgcaatttgctattgttggtgga Alignment from Spaln_aa2Genome GAACTACTGAGCCGGGAG-GAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctagataagttaacagataagttaacctgtcagtgctgtcatgctcacagGAACTACTTAGTCGAGAGcGAAGAATTGACATGGGCTGCATGTGTGCAATGGTCTCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACGATTGCCTGCACTAACACTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTCCAAGTGGAGCAAACTTCGAGCAAGAGATGGTGAAGAACGCATCAGCATGCCCTTGGgtaagagctggggcttcaatgcctgcctgcaatttgctattgttggtgga Alignment from Spaln_nt2Genome GAACTACTGAGCCGGGAG-GAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGCGAGC------TGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctagataagttaacagataagttaacctgtcagtgctgtcatgctcacagGAACTACTTAGTCGAGAGCGAAGAATTGACATGGGCTGCATGTGTGCAATGGTCTCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACGATTGCCTGCACTAACACTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTCCAAGTGGAGCAAACTTCGAGCAAGAGATGGTGAAGAACGCATCAGCATGCCCTTGGgtaagagctggggcttcaatgcctgcctgcaatttgctattgttggtgga Alignment from Pairagon GAACTACTGAGCCGGGAG-GAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCG------CGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctagataagttaacagataagttaacctgtcagtgctgtcatgctcacagGAACTACTTAGTCGAGAGCGAAGAATTGACATGGGCTGCATGTGTGCAATGGTCTCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACGATTGCCTGCACTAACACTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTCCAAGTGGAGCAAACTTCGAGCAAGAGATGGTGAAGAACGCATCAGCATGCCCTTGGgtaagagctggggcttcaatgcctgcctgcaatttgctattgttggtgga Alignment from Exonerate_protein2genome GAACTACTGAGCCGGGAG-GAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctagataagttaacagataagttaacctgtcagtgctgtcatgctcacagGAACTACTTAGTCGAGAGCGAAGAATTGACATGGGCTGCATGTGTGCAATGGTCTCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACGATTGCCTGCACTAACACTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTCCAAGTGGAGCAAACTTCGAGCAAGAGATGGTGAAGAACGCATCAGCATGCCCTTGGgtaagagctggggcttcaatgcctgcctgcaatttgctattgttggtgga Alignment from Exonerate_coding2genome GAACTACTGAGCCGGGAG-GAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctagataagttaacagataagttaacctgtcagtgctgtcatgctcacagGAACTACTTAGTCGAGAGCGAAGAATTGACATGGGCTGCATGTGTGCAATGGTCTCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACGATTGCCTGCACTAACACTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTCCAAGTGGAGCAAACTTCGAGCAAGAGATGGTGAAGAACGCATCAGCATGCCCTTGGgtaagagctggggcttcaatgcctgcctgcaatttgctattgttggtgga Alignment from GeneWise -GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctagataagttaacagataagttaacctgtcagtgctgtcatgctcacagGAACTACTTAGTCGAGAGCGAAGAATTGACATGGGCTGCATGTGTGCAATGGTCTCAGGCAGAGCAGCTGCGACGACGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACGATTGCCTGCACTAACACTGCTACTGCAGCAGGTGGATCGAGAACAGCCACATGTACACCGGCGCCGGGGCACCTCCAAGTGGAGCAAACTTCGAGCAAGAGATGGTGAAGAACGCATCAGCATGCCCTTGGgtaagagctggggcttcaatgcctgcctgcaatttgctattgttggtgga #### Map4k2_ID1623_3 --> 2 - 2 Original Alignment ggGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGC-CGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCag ataccatttaggcactgaacaatgcatgcctcgtcacctctctccctcagggGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCCGCCACCCCAATGTTGTGGCCTACATCAGCAGCTACCTCaggtgggtctgttcatccccccaccctctggtgtccattgtgccattcgctt Alignment from CESAR ggGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGC-CGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCag ataccatttaggcactgaacaatgcatgcctcgtcacctctctccctcagggGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCCGCCACCCCAATGTTGTGGCCTACATCAGCAGCTACCTCaggtgggtctgttcatccccccaccctctggtgtccattgtgccacatctgt Alignment from Spaln_aa2Genome GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGC-CGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG ataccatttaggcactgaacaatgcatgcctcgtcacctctctccctcagGGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCcCGCCACCCCAATGTTGTGGCCTACATCAGCAGCTACCTCAGgtgggtctgttcatccccccaccctctggtgtccattgtgccattcgctt Alignment from Spaln_nt2Genome GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATG-CCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG ataccatttaggcactgaacaatgcatgcctcgtcacctctctccctcagGGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCCGCCACCCCAATGTTGTGGCCTACATCAGCAGCTACCTCAGgtgggtctgttcatccccccaccctctggtgtccattgtgccattcgctt Alignment from Pairagon GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATG-CCGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG ataccatttaggcactgaacaatgcatgcctcgtcacctctctccctcagGGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCCGCCACCCCAATGTTGTGGCCTACATCAGCAGCTACCTCAGgtgggtctgttcatccccccaccctctggtgtccattgtgccattcgctt Alignment from Exonerate_protein2genome GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGC-CGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG ataccatttaggcactgaacaatgcatgcctcgtcacctctctccctcagGGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCCGCCACCCCAATGTTGTGGCCTACATCAGCAGCTACCTCAGgtgggtctgttcatccccccaccctctggtgtccattgtgccattcgctt Alignment from Exonerate_coding2genome GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGC-CGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG ataccatttaggcactgaacaatgcatgcctcgtcacctctctccctcagGGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCCGCCACCCCAATGTTGTGGCCTACATCAGCAGCTACCTCAGgtgggtctgttcatccccccaccctctggtgtccattgtgccattcgctt Alignment from GeneWise GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGC-CGCCACCCCAATGTCGTGGCCTACATCGGCAGCTACCTCAG ataccatttaggcactgaacaatgcatgcctcgtcacctctctccctcagGGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCCGCCACCCCAATGTTGTGGCCTACATCAGCAGCTACCTCAGgtgggtctgttcatccccccaccctctggtgtccattgtgccattcgctt #### Map4k2_ID1625_5 --> 2 - 0 Original Alignment ccACTGGGCCCCTGGAAGAACGGCAGATTGCCTATGTT-TGCCGGGAGGCACTGAAG ccttcaagatctcaagtccttctattcattgttatctccctttaatccagccACTGGGCCCCTGGAAGAACGGCAGATTGCCTATGTTCTGCCGGGAGGCACTTAGGgtaagcgatttgcaaacagtacccatttggggacccgaattacttgtgga Alignment from CESAR ccACTGGGCCCCTGGAAGAACGGCAGATTGCCTATGTT-TGCCGGGAGGCACTGAAG ccttcaagatctcaagtccttctattcattgttatctccctttaatccagccACTGGGCCCCTGGAAGAACGGCAGATTGCCTATGTTCTGCCGGGAGGCACTTAGGgtaagcgatttgcaaacagtacccatttggggacccgaattacttgtgga Alignment from Spaln_aa2Genome CCACTGGGCCCCTGGAAGAACGGCAGATTGCCTATGTT-TGCCGGGAGGCACTGAAG ccttcaagatctcaagtccttctattcattgttatctccctttaatccagCCACTGGGCCCCTGGAAGAACGGCAGATTGCCTATGTTcTGCCGGGAGGCACTTAGGgtaagcgatttgcaaacagtacccatttggggacccgaattacttgtgga Alignment from Spaln_nt2Genome CCACTGGGCCCCTGGAAGAACGGCAGATTGCCTATGTT-TGCCGGGAGGCACTGAAG ccttcaagatctcaagtccttctattcattgttatctccctttaatccagCCACTGGGCCCCTGGAAGAACGGCAGATTGCCTATGTTCTGCCGGGAGGCACTTAGGgtaagcgatttgcaaacagtacccatttggggacccgaattacttgtgga Alignment from Pairagon CCACTGGGCCCCTGGAAGAACGGCAGATTGCCTATGTT-TGCCGGGAGGCACTGAAG ccttcaagatctcaagtccttctattcattgttatctccctttaatccagCCACTGGGCCCCTGGAAGAACGGCAGATTGCCTATGTTCTGCCGGGAGGCACTTAGGgtaagcgatttgcaaacagtacccatttggggacccgaattacttgtgga Alignment from Exonerate_protein2genome CCACTGGGCCCCTGGAAGAACGGCAGATTGCCTATGTT-TGCCGGGAGGCACTGAAG ccttcaagatctcaagtccttctattcattgttatctccctttaatccagCCACTGGGCCCCTGGAAGAACGGCAGATTGCCTATGTTCTGCCGGGAGGCACTTAGGgtaagcgatttgcaaacagtacccatttggggacccgaattacttgtgga Alignment from Exonerate_coding2genome CCACTGGGCCCCTGGAAGAACGGCAGATTGCCTATGTT-TGCCGGGAGGCACTGAAG ccttcaagatctcaagtccttctattcattgttatctccctttaatccagCCACTGGGCCCCTGGAAGAACGGCAGATTGCCTATGTTCTGCCGGGAGGCACTTAGGgtaagcgatttgcaaacagtacccatttggggacccgaattacttgtgga Alignment from GeneWise CCACTGGGCCCCTGGAAGAACGGCAGATTGCCTAT-GTTTGCCGGGAGGCACTGAAG ccttcaagatctcaagtccttctattcattgttatctccctttaatccagCCACTGGGCCCCTGGAAGAACGGCAGATTGCCTATGTTCTGCCGGGAGGCACTTAGGgtaagcgatttgcaaacagtacccatttggggacccgaattacttgtgga #### Map4k2_ID1629_8 --> 2 - 2 Original Alignment cgGACTTTGGGGTGTCA-GGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACtg gtgtgggaagcaaatgtggtcctgggtctttcctttcccctttatttcagcaGATTTTGGGGTGTCGCGGTGAGGCAACAGCATCTGTTGCCAAGAGGCATTCTTTCATTGGCACTCCATACtggtaagatgttccacggcaatgggtgaagggcatatggagaagaccaccag Alignment from CESAR cgGACTTTGGGGTGTCA-GGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACtg gtgtgggaagcaaatgtggtcctgggtctttcctttcccctttatttcagcaGATTTTGGGGTGTCGCGGTGAGGCAACAGCATCTGTTGCCAAGAGGCATTCTTTCATTGGCACTCCATACtggtaagatgttccacggcaatgggtgaagggcatatggagaagaccaccag Alignment from Spaln_aa2Genome CGGACTTTGGGGTGTCA-GGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gtgtgggaagcaaatgtggtcctgggtctttcctttcccctttatttcagCAGATTTTGGGGTGTCGcGGTGAGGCAACAGCATCTGTTGCCAAGAGGCATTCTTTCATTGGCACTCCATACTGgtaagatgttccacggcaatgggtgaagggcatatggagaagaccaccag Alignment from Spaln_nt2Genome CGGACTTTGGGGTGTCA-GGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gtgtgggaagcaaatgtggtcctgggtctttcctttcccctttatttcagCAGATTTTGGGGTGTCGCGGTGAGGCAACAGCATCTGTTGCCAAGAGGCATTCTTTCATTGGCACTCCATACTGgtaagatgttccacggcaatgggtgaagggcatatggagaagaccaccag Alignment from Pairagon CGGACTTTGGGGTGTCA-GGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gtgtgggaagcaaatgtggtcctgggtctttcctttcccctttatttcagCAGATTTTGGGGTGTCGCGGTGAGGCAACAGCATCTGTTGCCAAGAGGCATTCTTTCATTGGCACTCCATACTGgtaagatgttccacggcaatgggtgaagggcatatggagaagaccaccag Alignment from Exonerate_protein2genome CGGACTTTGGGGTGTCA-GGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gtgtgggaagcaaatgtggtcctgggtctttcctttcccctttatttcagCAGATTTTGGGGTGTCGCGGTGAGGCAACAGCATCTGTTGCCAAGAGGCATTCTTTCATTGGCACTCCATACTGgtaagatgttccacggcaatgggtgaagggcatatggagaagaccaccag Alignment from Exonerate_coding2genome CGGACTTTGGGGTGTCA-GGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gtgtgggaagcaaatgtggtcctgggtctttcctttcccctttatttcagCAGATTTTGGGGTGTCGCGGTGAGGCAACAGCATCTGTTGCCAAGAGGCATTCTTTCATTGGCACTCCATACTGgtaagatgttccacggcaatgggtgaagggcatatggagaagaccaccag Alignment from GeneWise CGGACTTTGGGGTG-TCAGGCGAGCTGACAGCATCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG gtgtgggaagcaaatgtggtcctgggtctttcctttcccctttatttcagCAGATTTTGGGGTGTCGCGGTGAGGCAACAGCATCTGTTGCCAAGAGGCATTCTTTCATTGGCACTCCATACTGgtaagatgttccacggcaatgggtgaagggcatatggagaagaccaccag #### Map4k2_ID1630_9 --> 1 - 2 Original Alignment gATGGCACCAGAGGTT-GCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGag gggcatatggagaagaccaccagatttctgctgtctcttgtcttttgcaggATGGCCCCGGAAGTTCGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTATGTGACGTATGGGCATTGGGTATCACTCCAATTGAATCGAGTGAGCTCCAACCTCCGCTACTCCACCTGCACCCCATGaggtaggtttaatacttgcctcttgcctgtccccctgatgatccttgacggc Alignment from CESAR gATGGCACCAGAGGTT-GCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGag gggcatatggagaagaccaccagatttctgctgtctcttgtcttttgcaggATGGCCCCGGAAGTTCGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTATGTGACGTATGGGCATTGGGTATCACTCCAATTGAATCGAGTGAGCTCCAACCTCCGCTACTCCACCTGCACCCCATGaggtaggtttaatacttgcctcttgcctgtccccctgatgatccttgactgt Alignment from Spaln_aa2Genome GATGGCACCAGAGGTT-GCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGAG gggcatatggagaagaccaccagatttctgctgtctcttgtcttttgcagGATGGCCCCGGAAGTTcGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTATGTGACGTATGGGCATTGGGTATCACTCCAATTGAATCGAGTGAGCTCCAACCTCCGCTACTCCACCTGCACCCCATGAGgtaggtttaatacttgcctcttgcctgtccccctgatgatccttgacggc Alignment from Spaln_nt2Genome GATGGCACCAGAGGTT-GCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGAG gggcatatggagaagaccaccagatttctgctgtctcttgtcttttgcagGATGGCCCCGGAAGTTCGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTATGTGACGTATGGGCATTGGGTATCACTCCAATTGAATCGAGTGAGCTCCAACCTCCGCTACTCCACCTGCACCCCATGAGgtaggtttaatacttgcctcttgcctgtccccctgatgatccttgacggc Alignment from Pairagon GATGGCACCAGAGGTT-GCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGAG gggcatatggagaagaccaccagatttctgctgtctcttgtcttttgcagGATGGCCCCGGAAGTTCGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTATGTGACGTATGGGCATTGGGTATCACTCCAATTGAATCGAGTGAGCTCCAACCTCCGCTACTCCACCTGCACCCCATGAGgtaggtttaatacttgcctcttgcctgtccccctgatgatccttgacggc Alignment from Exonerate_protein2genome GATGGCACCAGAGGTT-GCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGAG gggcatatggagaagaccaccagatttctgctgtctcttgtcttttgcagGATGGCCCCGGAAGTTCGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTATGTGACGTATGGGCATTGGGTATCACTCCAATTGAATCGAGTGAGCTCCAACCTCCGCTACTCCACCTGCACCCCATGAGgtaggtttaatacttgcctcttgcctgtccccctgatgatccttgacggc Alignment from Exonerate_coding2genome GATGGCACCAGAGGTT-GCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGAG gggcatatggagaagaccaccagatttctgctgtctcttgtcttttgcagGATGGCCCCGGAAGTTCGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTATGTGACGTATGGGCATTGGGTATCACTCCAATTGAATCGAGTGAGCTCCAACCTCCGCTACTCCACCTGCACCCCATGAGgtaggtttaatacttgcctcttgcctgtccccctgatgatccttgacggc Alignment from GeneWise GATGGCACCAGAGGTT-GCCGCTGTGGAACGCAAGGGTGGCTACAATGAGCTGTGTGACGTCTGGGCCCTGGGCATCACTGCCATTGAGTTGGGCGAGCTGCAACCGCCACTGTTCCACCTGCACCCCATGAG gggcatatggagaagaccaccagatttctgctgtctcttgtcttttgcagGATGGCCCCGGAAGTTCGCTGCTGTGGAACGTAAGGGTGGCTACAATGAGCTATGTGACGTATGGGCATTGGGTATCACTCCAATTGAATCGAGTGAGCTCCAACCTCCGCTACTCCACCTGCACCCCATGAGgtaggtttaatacttgcctcttgcctgtccccctgatgatccttgacggc #### Map4k2_ID1631_10 --> 1 - 2 Original Alignment gGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAG-CCACCCAAGCTAAGAGATAAGACGCGTtg cttgcctgtccccctgatgatccttgactgtcttttttttaatattacaggGCACTGATGCTCATGTCAAAGAGTAGTTTCCAGCCCACCTAAGCTAAGAGATAAGACACGTtggtgagacctcacccacagctgagaaatttccagcctactgtatgagagag Alignment from CESAR gGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAG-CCACCCAAGCTAAGAGATAAGACGCGTtg cttgcctgtccccctgatgatccttgactgtcttttttttaatattacaggGCACTGATGCTCATGTCAAAGAGTAGTTTCCAGCCCACCTAAGCTAAGAGATAAGACACGTtggtgagacctcacccacagctgagaaatttccagcctactgtatgagagag Alignment from Spaln_aa2Genome GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCA-CCCAAGCTAAGAGATAAGACGCGTTG cttgcctgtccccctgatgatccttgactgtcttttttttaatattacagGGCACTGATGCTCATGTCAAAGAGTAGTTTCCAGCCCaCCTAAGCTAAGAGATAAGACACGTTGgtgagacctcacccacagctgagaaatttccagcctactgtatgagagag Alignment from Spaln_nt2Genome GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCC-ACCCAAGCTAAGAGATAAGACGCGTTG cttgcctgtccccctgatgatccttgactgtcttttttttaatattacagGGCACTGATGCTCATGTCAAAGAGTAGTTTCCAGCCCACCTAAGCTAAGAGATAAGACACGTTGgtgagacctcacccacagctgagaaatttccagcctactgtatgagagag Alignment from Pairagon GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAG-CCACCCAAGCTAAGAGATAAGACGCGTTG cttgcctgtccccctgatgatccttgactgtcttttttttaatattacagGGCACTGATGCTCATGTCAAAGAGTAGTTTCCAGCCCACCTAAGCTAAGAGATAAGACACGTTGgtgagacctcacccacagctgagaaatttccagcctactgtatgagagag Alignment from Exonerate_protein2genome GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAG-CCACCCAAGCTAAGAGATAAGACGCGTTG cttgcctgtccccctgatgatccttgactgtcttttttttaatattacagGGCACTGATGCTCATGTCAAAGAGTAGTTTCCAGCCCACCTAAGCTAAGAGATAAGACACGTTGgtgagacctcacccacagctgagaaatttccagcctactgtatgagagag Alignment from Exonerate_coding2genome GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAG-CCACCCAAGCTAAGAGATAAGACGCGTTG cttgcctgtccccctgatgatccttgactgtcttttttttaatattacagGGCACTGATGCTCATGTCAAAGAGTAGTTTCCAGCCCACCTAAGCTAAGAGATAAGACACGTTGgtgagacctcacccacagctgagaaatttccagcctactgtatgagagag Alignment from GeneWise GGCCTTGATGCTCATGTCGAAAAGCAGCTTC-CAGCCACCCAAGCTAAGAGATAAGACGCGTTG cttgcctgtccccctgatgatccttgactgtcttttttttaatattacagGGCACTGATGCTCATGTCAAAGAGTAGTTTCCAGCCCACCTAAGCTAAGAGATAAGACACGTTGgtgagacctcacccacagctgagaaatttccagcctactgtatgagagag #### Map4k2_ID1632_11 --> 1 - 0 Original Alignment gACCCAGAATTTCCACCACTTCCTC-AAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tcagtgcctagtttgcatttgggtgggtcgccccccatgctctctcccaggACCCAGAATTTCCACCACTTCCGCCAAGCTAGCCCTGACCAAAAACCCAAAGAAGAGGCCCACAGCAGAGAGGCTTCTGCAAgtaggcagcagagaataactggtgacttgagcctttgaaaacatgacctg Alignment from CESAR gACCCAGAATTTCCACCACTTC-CTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tcagtgcctagtttgcatttgggtgggtcgccccccatgctctctcccaggACCCAGAATTTCCACCACTTCCGCCAAGCTAGCCCTGACCAAAAACCCAAAGAAGAGGCCCACAGCAGAGAGGCTTCTGCAAgtaggcagcagagaataactggtgacttgagcctttgaaaacatgacctg Alignment from Spaln_aa2Genome GACCCAGAATTTCCACCACTTC-CTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tcagtgcctagtttgcatttgggtgggtcgccccccatgctctctcccagGACCCAGAATTTCCACCACTTCcGCCAAGCTAGCCCTGACCAAAAACCCAAAGAAGAGGCCCACAGCAGAGAGGCTTCTGCAAgtaggcagcagagaataactggtgacttgagcctttgaaaacatgacctg Alignment from Spaln_nt2Genome GACCCAGAATTTCCACCACTTCCTC-AAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tcagtgcctagtttgcatttgggtgggtcgccccccatgctctctcccagGACCCAGAATTTCCACCACTTCCGCCAAGCTAGCCCTGACCAAAAACCCAAAGAAGAGGCCCACAGCAGAGAGGCTTCTGCAAgtaggcagcagagaataactggtgacttgagcctttgaaaacatgacctg Alignment from Pairagon GACCCAGAATTTCCACCACTTCC-TCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tcagtgcctagtttgcatttgggtgggtcgccccccatgctctctcccagGACCCAGAATTTCCACCACTTCCGCCAAGCTAGCCCTGACCAAAAACCCAAAGAAGAGGCCCACAGCAGAGAGGCTTCTGCAAgtaggcagcagagaataactggtgacttgagcctttgaaaacatgacctg Alignment from Exonerate_protein2genome GACCCAGAATTTCCACCACTTC-CTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tcagtgcctagtttgcatttgggtgggtcgccccccatgctctctcccagGACCCAGAATTTCCACCACTTCCGCCAAGCTAGCCCTGACCAAAAACCCAAAGAAGAGGCCCACAGCAGAGAGGCTTCTGCAAgtaggcagcagagaataactggtgacttgagcctttgaaaacatgacctg Alignment from Exonerate_coding2genome GACCCAGAATTTCCACCACTTC-CTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tcagtgcctagtttgcatttgggtgggtcgccccccatgctctctcccagGACCCAGAATTTCCACCACTTCCGCCAAGCTAGCCCTGACCAAAAACCCAAAGAAGAGGCCCACAGCAGAGAGGCTTCTGCAAgtaggcagcagagaataactggtgacttgagcctttgaaaacatgacctg Alignment from GeneWise GACCCAGAATTTCCACCACTTC-CTCAAGCTGGCCCTAACCAAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG tcagtgcctagtttgcatttgggtgggtcgccccccatgctctctcccagGACCCAGAATTTCCACCACTTCCGCCAAGCTAGCCCTGACCAAAAACCCAAAGAAGAGGCCCACAGCAGAGAGGCTTCTGCAAgtaggcagcagagaataactggtgacttgagcctttgaaaacatgacctg #### Map4k2_ID1637_16 --> 1 - 2 Original Alignment gAGCCTGCTGCAGTCA-GTCCAGGAGGCCCTGGAGGAAag caggcagaaccctgtcgaagattgggtctctgatctttgtctttttgtaggAGCCTGTTGCAGTCACGTGCAGGAAGCTCTGGAGGACaggtgagcgtttatcacttgatgagaaggtgggaagatgctgtcacgcctga Alignment from CESAR gAGCCTGCTGCAGTCA-GTCCAGGAGGCCCTGGAGGAAag caggcagaaccctgtcgaagattgggtctctgatctttgtctttttgtaggAGCCTGTTGCAGTCACGTGCAGGAAGCTCTGGAGGACaggtgagcgtttatcacttgatgagaaggtgggaagatgctgtcacgcctga Alignment from Spaln_aa2Genome GAGCCTGCTGCAGTCA-GTCCAGGAGGCCCTGGAGGAAAG caggcagaaccctgtcgaagattgggtctctgatctttgtctttttgtagGAGCCTGTTGCAGTCAcGTGCAGGAAGCTCTGGAGGACAGgtgagcgtttatcacttgatgagaaggtgggaagatgctgtcacgcctga Alignment from Spaln_nt2Genome GAGCCTGCTGCAGTCA-GTCCAGGAGGCCCTGGAGGAAAG caggcagaaccctgtcgaagattgggtctctgatctttgtctttttgtagGAGCCTGTTGCAGTCACGTGCAGGAAGCTCTGGAGGACAGgtgagcgtttatcacttgatgagaaggtgggaagatgctgtcacgcctga Alignment from Pairagon GAGCCTGCTGCAGTCA-GTCCAGGAGGCCCTGGAGGAAAG caggcagaaccctgtcgaagattgggtctctgatctttgtctttttgtagGAGCCTGTTGCAGTCACGTGCAGGAAGCTCTGGAGGACAGgtgagcgtttatcacttgatgagaaggtgggaagatgctgtcacgcctga Alignment from Exonerate_protein2genome GAGCCTGCTGCAGTCA-GTCCAGGAGGCCCTGGAGGAAAG caggcagaaccctgtcgaagattgggtctctgatctttgtctttttgtagGAGCCTGTTGCAGTCACGTGCAGGAAGCTCTGGAGGACAGgtgagcgtttatcacttgatgagaaggtgggaagatgctgtcacgcctga Alignment from Exonerate_coding2genome caggcagaaccctgtcgaagattgggtctctgatctttgtctttttgtaggagcctgttgcagtcacgtgcaggaagctctggaggacaggtgagcgtttatcacttgatgagaaggtgggaagatgctgtcacgcctga Alignment from GeneWise caggcagaaccctgtcgaagattgggtctctgatctttgtctttttgtaggagcctgttgcagtcacgtgcaggaagctctggaggacaggtgagcgtttatcacttgatgagaaggtgggaagatgctgtcacgcctga #### Map4k2_ID1638_17 --> 1 - 0 Original Alignment gAGCCTGACTATCCGGCCA-GCCTTAGAACTCCAG agacagccccctcttacacataataatataaaatgtacactgctttgcaggAGCCTGGCTATCCGGCCACGCCTTAGAACTTCAGgtgagtgttgaagagtgtgatacttgaaaaggactcataaactagtgtgc Alignment from CESAR gAGCCTGACTATCCGGCCA-GCCTTAGAACTCCAG agacagccccctcttacacataataatataaaatgtacactgctttgcaggAGCCTGGCTATCCGGCCACGCCTTAGAACTTCAGgtgagtgttgaagagtgtgatacttgaaaaggactcataaactagtgtgc Alignment from Spaln_aa2Genome GAGCCTGACTATCCGGCCA-GCCTTAGAACTCCAG agacagccccctcttacacataataatataaaatgtacactgctttgcagGAGCCTGGCTATCCGGCCAcGCCTTAGAACTTCAGgtgagtgttgaagagtgtgatacttgaaaaggactcataaactagtgtgc Alignment from Spaln_nt2Genome GAGCCTGACTATCCGGCCA-GCCTTAGAACTCCAG agacagccccctcttacacataataatataaaatgtacactgctttgcagGAGCCTGGCTATCCGGCCACGCCTTAGAACTTCAGgtgagtgttgaagagtgtgatacttgaaaaggactcataaactagtgtgc Alignment from Pairagon GAGCCTGACTATCCGGCCA-GCCTTAGAACTCCAG agacagccccctcttacacataataatataaaatgtacactgctttgcagGAGCCTGGCTATCCGGCCACGCCTTAGAACTTCAGgtgagtgttgaagagtgtgatacttgaaaaggactcataaactagtgtgc Alignment from Exonerate_protein2genome agacagccccctcttacacataataatataaaatgtacactgctttgcaggagcctggctatccggccacgccttagaacttcaggtgagtgttgaagagtgtgatacttgaaaaggactcataaactagtgtgc Alignment from Exonerate_coding2genome agacagccccctcttacacataataatataaaatgtacactgctttgcaggagcctggctatccggccacgccttagaacttcaggtgagtgttgaagagtgtgatacttgaaaaggactcataaactagtgtgc Alignment from GeneWise ----GGGAGCCTGCTGCAG agacagccccctcttacacataataatataaaatgtacactgctttgcaggagcctggctatccggccacgccttagaacttcaggtgagtgttgaagagtgtgatacttgaaaagGACTCATAAACTAGTGTGC #### Mark2_ID2107_14 --> 0 - 2 Original Alignment AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTT-TTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACag agcctaattggactacactagagtccatttcctttgttgttaaactatagAACGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCGCTTCTTGGATAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACaggtgagctaactggactgcttagcatagtcccaagggcggcttcaccaggg Alignment from CESAR AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTT-TTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACag agcctaattggactacactagagtccatttcctttgttgttaaactatagAACGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCGCTTCTTGGATAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACaggtgagctaactggactgcttagcatagtcccaagggcggcttcaccaggg Alignment from Spaln_aa2Genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTTTTG-GACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agcctaattggactacactagagtccatttcctttgttgttaaactatagAACGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCGCTTCTTgGATAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACAGgtgagctaactggactgcttagcatagtcccaagggcggcttcaccaggg Alignment from Spaln_nt2Genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTT-TTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agcctaattggactacactagagtccatttcctttgttgttaaactatagAACGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCGCTTCTTGGATAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACAGgtgagctaactggactgcttagcatagtcccaagggcggcttcaccaggg Alignment from Pairagon AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTT-TTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agcctaattggactacactagagtccatttcctttgttgttaaactatagAACGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCGCTTCTTGGATAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACAGgtgagctaactggactgcttagcatagtcccaagggcggcttcaccaggg Alignment from Exonerate_protein2genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTT-TTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agcctaattggactacactagagtccatttcctttgttgttaaactatagAACGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCGCTTCTTGGATAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACAGgtgagctaactggactgcttagcatagtcccaagggcggcttcaccaggg Alignment from Exonerate_coding2genome AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTT-TTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agcctaattggactacactagagtccatttcctttgttgttaaactatagAACGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCGCTTCTTGGATAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACAGgtgagctaactggactgcttagcatagtcccaagggcggcttcaccaggg Alignment from GeneWise AACAGCGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCACTT-TTGGACAGGGCCAGCCTTGGCCAGGCCTCCATCCAGAATGGTAAAGACAG agcctaattggactacactagagtccatttcctttgttgttaaactatagAACGGTGTCCTTTCCACCAGCACAAACCGAAGCAGGAACTCCCCGCTTCTTGGATAGGGCCAGCCTTGGCCAGGCCTCCATTCAGAATGGAAAAGACAGgtgagctaactggactgcttagcatagtcccaagggcggcttcaccaggg #### Mark2_ID2111_10 --> 0 - 1 Original Alignment CAAATTATG---------------AAA-GATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAg tgctaagttttctttctgcctgtaccctttgattttttccttcctattagCAAATTATGAAAGATCAGTGGATGAAACGATCAGTGGATGAATGTGGGACATGAGGATGTTGAACTAAAGCCTTATGTGGAACCTCTTCCTGACTATAAGGAACCCCGGCGAACGggtgagtccatgctgctgggagcctgagatgcccccacatgggagctagcc Alignment from CESAR CAAATTATGAAAGATCGGTGGATG-AAC---------------GTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAg tgctaagttttctttctgcctgtaccctttgattttttccttcctattagCAAATTATGAAAGATCAGTGGATGAAACGATCAGTGGATGAATGTGGGACATGAGGATGTTGAACTAAAGCCTTATGTGGAACCTCTTCCTGACTATAAGGAACCCCGGCGAACGggtgagtccatgctgctgggagcctgagatgcccccacatgggagctagcc Alignment from Spaln_aa2Genome CAAATTATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACA----------------- tgctaagttttctttctgcctgtaccctttgattttttccttcctattagCAAATTATGAAAGATCAGTGGATGAAACGATCAGTGGATGAATGTGGGACATGAGGATGTTGAACTAAAGCCTTATGTGGAACCTCTTCCTGACTATAAGGAACCCCGGCGAACGGgtgagtccatgctgctgggagcctgagatgcccccacatgggagctagcc Alignment from Spaln_nt2Genome CAAATTATGAAA----------------GATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG tgctaagttttctttctgcctgtaccctttgattttttccttcctattagCAAATTATGAAAGATCAGTGGATGAAACGATCAGTGGATGAATGTGGGACATGAGGATGTTGAACTAAAGCCTTATGTGGAACCTCTTCCTGACTATAAGGAACCCCGGCGAACGGgtgagtccatgctgctgggagcctgagatgcccccacatgggagctagcc Alignment from Pairagon CAAATTATGAAA----------------GATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG tgctaagttttctttctgcctgtaccctttgattttttccttcctattagCAAATTATGAAAGATCAGTGGATGAAACGATCAGTGGATGAATGTGGGACATGAGGATGTTGAACTAAAGCCTTATGTGGAACCTCTTCCTGACTATAAGGAACCCCGGCGAACGGgtgagtccatgctgctgggagcctgagatgcccccacatgggagctagcc Alignment from Exonerate_protein2genome AAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG tgctaagttttctttctgcctgtaccctttgattttttccttcctattagcaaattatgaaagatcagtggatgaAACGATCAGTGGATGAATGTGGGACATGAGGATGTTGAACTAAAGCCTTATGTGGAACCTCTTCCTGACTATAAGGAACCCCGGCGAACGGgtgagtccatgctgctgggagcctgagatgcccccacatgggagctagcc Alignment from Exonerate_coding2genome GAGAGGCACTTTAGAGCAAATTATGAAAGATCGGTGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCT-CCCTGACTACAAGGACCCCCGGCGGACAG tgctaagttttctttctgcctgtaccctttgattttttccttcctattagCAAATTATGAAAGATCAGTGGATGAAACGATCAGTGGATGAATGTGGGACATGAGGATGTTGAACTAAAGCCTTATGTGGAACCTCTTCCT-GACTATAAGGAACCCCGGCGAACGGgtgagtccatgctgctgggagcctgagatgcccccacatgggagctagcc Alignment from GeneWise TGGATGAACGTGGGGCATGAGGACGATGAGCTAAAGCCTTATGTGGAACCTCTCCCTGACTACAAGGACCCCCGGCGGACAG tgctaagttttctttctgcctgtaccctttgattttttccttcctattagcaaattatgaaagatcagtggatgaaacgatcagTGGATGAATGTGGGACATGAGGATGTTGAACTAAAGCCTTATGTGGAACCTCTTCCTGACTATAAGGAACCCCGGCGAACGGgtgagtccatgctgctgggagcctgagatgcccccacatgggagctagcc #### Mark2_ID2114_7 --> 0 - 0 Original Alignment ATAGTGTCTGCTGTGCAGTACTGT-CACCAGAAGTTCATTGTTCATAGAGATCTAAAG ctgttatgcctccttgtttcactctcagttttgtctttttgtgtccatagATAGTGTCTGCTGTGCAGTACTGTCCACCAGAAGTTCATTGTTCATAGAGATCTAAAGgtattttatgttcctgtccctataacctgctgtgagtgggccaggtggcc Alignment from CESAR ATAGTGTCTGCTGTGCAGTACTGT-CACCAGAAGTTCATTGTTCATAGAGATCTAAAG ctgttatgcctccttgtttcactctcagttttgtctttttgtgtccatagATAGTGTCTGCTGTGCAGTACTGTCCACCAGAAGTTCATTGTTCATAGAGATCTAAAGgtattttatgttcctgtccctataacctgctgtgagtgggccaggtggcc Alignment from Spaln_aa2Genome ATAGTGTCTGCTGTGCAGTACTGT-CACCAGAAGTTCATTGTTCATAGAGATCTAAAG ctgttatgcctccttgtttcactctcagttttgtctttttgtgtccatagATAGTGTCTGCTGTGCAGTACTGTcCACCAGAAGTTCATTGTTCATAGAGATCTAAAGgtattttatgttcctgtccctataacctgctgtgagtgggccaggtggcc Alignment from Spaln_nt2Genome ATAGTGTCTGCTGTGCAGTACTGT-CACCAGAAGTTCATTGTTCATAGAGATCTAAAG ctgttatgcctccttgtttcactctcagttttgtctttttgtgtccatagATAGTGTCTGCTGTGCAGTACTGTCCACCAGAAGTTCATTGTTCATAGAGATCTAAAGgtattttatgttcctgtccctataacctgctgtgagtgggccaggtggcc Alignment from Pairagon ATAGTGTCTGCTGTGCAGTACTGT-CACCAGAAGTTCATTGTTCATAGAGATCTAAAG ctgttatgcctccttgtttcactctcagttttgtctttttgtgtccatagATAGTGTCTGCTGTGCAGTACTGTCCACCAGAAGTTCATTGTTCATAGAGATCTAAAGgtattttatgttcctgtccctataacctgctgtgagtgggccaggtggcc Alignment from Exonerate_protein2genome ATAGTGTCTGCTGTGCAGTACTGT-CACCAGAAGTTCATTGTTCATAGAGATCTAAAG ctgttatgcctccttgtttcactctcagttttgtctttttgtgtccatagATAGTGTCTGCTGTGCAGTACTGTCCACCAGAAGTTCATTGTTCATAGAGATCTAAAGgtattttatgttcctgtccctataacctgctgtgagtgggccaggtggcc Alignment from Exonerate_coding2genome ATAGTGTCTGCTGTGCAGTACTGT-CACCAGAAGTTCATTGTTCATAGAGATCTAAAG ctgttatgcctccttgtttcactctcagttttgtctttttgtgtccatagATAGTGTCTGCTGTGCAGTACTGTCCACCAGAAGTTCATTGTTCATAGAGATCTAAAGgtattttatgttcctgtccctataacctgctgtgagtgggccaggtggcc Alignment from GeneWise ATAGTGTCTGCTGTGCAGTACTGT-CACCAGAAGTTCATTGTTCATAGAGATCTAAAG ctgttatgcctccttgtttcactctcagttttgtctttttgtgtccatagATAGTGTCTGCTGTGCAGTACTGTCCACCAGAAGTTCATTGTTCATAGAGATCTAAAGgtattttatgttcctgtccctataacctgctgtgagtgggccaggtggcc #### Mark2_ID2115_6 --> 2 - 0 Original Alignment gaGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATG-AAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ccaaccctcacccattattctcacagtctgacgatggtgtgtctctgtaggaGAGGTGTTTGATTATCTAGTGGCTCATGGCAGGATGCAAAGAAAAAGAAGCTCGAGCCAAATTCCGCCAGgtaagagtgtctccactcttggctttagatctaggatgaggatatggcac Alignment from CESAR gaGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATG-AAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ccaaccctcacccattattctcacagtctgacgatggtgtgtctctgtaggaGAGGTGTTTGATTATCTAGTGGCTCATGGCAGGATGCAAAGAAAAAGAAGCTCGAGCCAAATTCCGCCAGgtaagagtgtctccactcttggctttagatctaggatgaggatatggcac Alignment from Spaln_aa2Genome GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATG-AAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ccaaccctcacccattattctcacagtctgacgatggtgtgtctctgtagGAGAGGTGTTTGATTATCTAGTGGCTCATGGCAGGATGcAAAGAAAAAGAAGCTCGAGCCAAATTCCGCCAGgtaagagtgtctccactcttggctttagatctaggatgaggatatggcac Alignment from Spaln_nt2Genome GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATG-AAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ccaaccctcacccattattctcacagtctgacgatggtgtgtctctgtagGAGAGGTGTTTGATTATCTAGTGGCTCATGGCAGGATGCAAAGAAAAAGAAGCTCGAGCCAAATTCCGCCAGgtaagagtgtctccactcttggctttagatctaggatgaggatatggcac Alignment from Pairagon GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATG-AAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ccaaccctcacccattattctcacagtctgacgatggtgtgtctctgtagGAGAGGTGTTTGATTATCTAGTGGCTCATGGCAGGATGCAAAGAAAAAGAAGCTCGAGCCAAATTCCGCCAGgtaagagtgtctccactcttggctttagatctaggatgaggatatggcac Alignment from Exonerate_protein2genome GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATG-AAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ccaaccctcacccattattctcacagtctgacgatggtgtgtctctgtagGAGAGGTGTTTGATTATCTAGTGGCTCATGGCAGGATGCAAAGAAAAAGAAGCTCGAGCCAAATTCCGCCAGgtaagagtgtctccactcttggctttagatctaggatgaggatatggcac Alignment from Exonerate_coding2genome GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATG-AAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ccaaccctcacccattattctcacagtctgacgatggtgtgtctctgtagGAGAGGTGTTTGATTATCTAGTGGCTCATGGCAGGATGCAAAGAAAAAGAAGCTCGAGCCAAATTCCGCCAGgtaagagtgtctccactcttggctttagatctaggatgaggatatggcac Alignment from GeneWise GAGAGGTGTTTGATTACCTAGTGGCCCATGGCAGGATG-AAAGAAAAAGAAGCTCGAGCCAAATTTCGCCAG ccaaccctcacccattattctcacagtctgacgatggtgtgtctctgtagGAGAGGTGTTTGATTATCTAGTGGCTCATGGCAGGATGCAAAGAAAAAGAAGCTCGAGCCAAATTCCGCCAGgtaagagtgtctccactcttggctttagatctaggatgaggatatggcac #### Mrpl43_ID9260_2 --> 1 - 1 Original Alignment gGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCA-CGAATAGTGGCCGAATACc aaactgatgcatgagctagtctctctactcttccccttcttgtttggcaggGAGTTGGTGGAGCGTGAGGTGACTGACTTTGCCCGATGGAACCCAGGAGTTGTGGTATATGTGAACCCTCGGCCATGCACCATGCCACCGAATGGTGGCAGAATACcgtatgtgtagctgagtgagggcaggggtgcgcagggcatgatctgctaca Alignment from CESAR gGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCA-CGAATAGTGGCCGAATACc aaactgatgcatgagctagtctctctactcttccccttcttgtttggcaggGAGTTGGTGGAGCGTGAGGTGACTGACTTTGCCCGATGGAACCCAGGAGTTGTGGTATATGTGAACCCTCGGCCATGCACCATGCCACCGAATGGTGGCAGAATACcgtatgtgtagctgagtgagggcaggggtgcgcagggcatgatctgctaca Alignment from Spaln_aa2Genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCA-CGAATAGTGGCCGAATACC aaactgatgcatgagctagtctctctactcttccccttcttgtttggcagGGAGTTGGTGGAGCGTGAGGTGACTGACTTTGCCCGATGGAACCCAGGAGTTGTGGTATATGTGAACCCTCGGCCATGCACCATGCCAcCGAATGGTGGCAGAATACCgtatgtgtagctgagtgagggcaggggtgcgcagggcatgatctgctaca Alignment from Spaln_nt2Genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCAC-GAATAGTGGCCGAATACC aaactgatgcatgagctagtctctctactcttccccttcttgtttggcagGGAGTTGGTGGAGCGTGAGGTGACTGACTTTGCCCGATGGAACCCAGGAGTTGTGGTATATGTGAACCCTCGGCCATGCACCATGCCACCGAATGGTGGCAGAATACCgtatgtgtagctgagtgagggcaggggtgcgcagggcatgatctgctaca Alignment from Pairagon GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCA-CGAATAGTGGCCGAATACC aaactgatgcatgagctagtctctctactcttccccttcttgtttggcagGGAGTTGGTGGAGCGTGAGGTGACTGACTTTGCCCGATGGAACCCAGGAGTTGTGGTATATGTGAACCCTCGGCCATGCACCATGCCACCGAATGGTGGCAGAATACCgtatgtgtagctgagtgagggcaggggtgcgcagggcatgatctgctaca Alignment from Exonerate_protein2genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCA-CGAATAGTGGCCGAATACC aaactgatgcatgagctagtctctctactcttccccttcttgtttggcagGGAGTTGGTGGAGCGTGAGGTGACTGACTTTGCCCGATGGAACCCAGGAGTTGTGGTATATGTGAACCCTCGGCCATGCACCATGCCACCGAATGGTGGCAGAATACCgtatgtgtagctgagtgagggcaggggtgcgcagggcatgatctgctaca Alignment from Exonerate_coding2genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCA-CGAATAGTGGCCGAATACC aaactgatgcatgagctagtctctctactcttccccttcttgtttggcagGGAGTTGGTGGAGCGTGAGGTGACTGACTTTGCCCGATGGAACCCAGGAGTTGTGGTATATGTGAACCCTCGGCCATGCACCATGCCACCGAATGGTGGCAGAATACCgtatgtgtagctgagtgagggcaggggtgcgcagggcatgatctgctaca Alignment from GeneWise GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCA-CGAATAGTGGCCGAATACC aaactgatgcatgagctagtctctctactcttccccttcttgtttggcagGGAGTTGGTGGAGCGTGAGGTGACTGACTTTGCCCGATGGAACCCAGGAGTTGTGGTATATGTGAACCCTCGGCCATGCACCATGCCACCGAATGGTGGCAGAATACCgtatgtgtagctgagtgagggcaggggtgcgcagggcatgatctgctaca #### Ms4a2_ID3243_2 --> 1 - 0 Original Alignment tGCACCTGACATTGAACTCTTGGAA-GCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattagaatatgctaagaagcctttcccttgtgtgcctccagtGCACCTGACATTGAACTCCTGGAACGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGACATGGCGGACATTTCTGAAGAAAGAATTGGAGTTCCTGGGAgtaaatgtctggcttttattcccagacgaaagcgctgccccctcctactt Alignment from CESAR tGCACCTGACATTGAACTCTTGGAA-GCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattagaatatgctaagaagcctttcccttgtgtgcctccagtGCACCTGACATTGAACTCCTGGAACGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGACATGGCGGACATTTCTGAAGAAAGAATTGGAGTTCCTGGGAgtaaatgtctggcttttattcccagacgaaagcgctgccccctcctactt Alignment from Spaln_aa2Genome TGCACCTGACATTGAACTCTTGGAA-GCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattagaatatgctaagaagcctttcccttgtgtgcctccagTGCACCTGACATTGAACTCCTGGAAcGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGACATGGCGGACATTTCTGAAGAAAGAATTGGAGTTCCTGGGAgtaaatgtctggcttttattcccagacgaaagcgctgccccctcctactt Alignment from Spaln_nt2Genome TGCACCTGACATTGAACTCTTGGAA-GCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattagaatatgctaagaagcctttcccttgtgtgcctccagTGCACCTGACATTGAACTCCTGGAACGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGACATGGCGGACATTTCTGAAGAAAGAATTGGAGTTCCTGGGAgtaaatgtctggcttttattcccagacgaaagcgctgccccctcctactt Alignment from Pairagon TGCACCTGACATTGAACTCTTGGAA-GCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattagaatatgctaagaagcctttcccttgtgtgcctccagTGCACCTGACATTGAACTCCTGGAACGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGACATGGCGGACATTTCTGAAGAAAGAATTGGAGTTCCTGGGAgtaaatgtctggcttttattcccagacgaaagcgctgccccctcctactt Alignment from Exonerate_protein2genome TGCACCTGACATTGAACTCTTGGAA-GCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattagaatatgctaagaagcctttcccttgtgtgcctccagTGCACCTGACATTGAACTCCTGGAACGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGACATGGCGGACATTTCTGAAGAAAGAATTGGAGTTCCTGGGAgtaaatgtctggcttttattcccagacgaaagcgctgccccctcctactt Alignment from Exonerate_coding2genome TGCACCTGACATTGAACTCTTGGAA-GCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattagaatatgctaagaagcctttcccttgtgtgcctccagTGCACCTGACATTGAACTCCTGGAACGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGACATGGCGGACATTTCTGAAGAAAGAATTGGAGTTCCTGGGAgtaaatgtctggcttttattcccagacgaaagcgctgccccctcctactt Alignment from GeneWise TGCACCTGACATTGAACTCTTGGAA-GCATCTCCTGCCAAAGCAGCCCCACCAAAGCAGACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattagaatatgctaagaagcctttcccttgtgtgcctccagTGCACCTGACATTGAACTCCTGGAACGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGACATGGCGGACATTTCTGAAGAAAGAATTGGAGTTCCTGGGAgtaaatgtctggcttttattcccagacgaaagcgctgccccctcctactt #### Mta2_ID2534_7 --> 2 - 2 Original Alignment gaGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAG-ATTGATCAGTTTCTCGTGGTGGCCcg gtttctgacttatttccctttctcccacaccccactctgttgtattgcaggaGAATCAGATAATCGAAATCAACAGAAAATGGAGATGAAAGTCTGGGACCCAGGCAACCCCCTCACAGACCGACAGCATTGACCAATTTCTTGTGGTGGCTcggtatgtagatgttcagggaggtggcataggtgcattggattgaaatttgc Alignment from CESAR gaGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAG-ATTGATCAGTTTCTCGTGGTGGCCcg gtttctgacttatttccctttctcccacaccccactctgttgtattgcaggaGAATCAGATAATCGAAATCAACAGAAAATGGAGATGAAAGTCTGGGACCCAGGCAACCCCCTCACAGACCGACAGCATTGACCAATTTCTTGTGGTGGCTcggtatgtagatgttcagggaggtggcataggtgcattggattgaaatttgc Alignment from Spaln_aa2Genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAG-ATTGATCAGTTTCTCGTGGTGGCCCG gtttctgacttatttccctttctcccacaccccactctgttgtattgcagGAGAATCAGATAATCGAAATCAACAGAAAATGGAGATGAAAGTCTGGGACCCAGGCAACCCCCTCACAGACCGACAGcATTGACCAATTTCTTGTGGTGGCTCGgtatgtagatgttcagggaggtggcataggtgcattggattgaaatttgc Alignment from Spaln_nt2Genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAG-ATTGATCAGTTTCTCGTGGTGGCCCG gtttctgacttatttccctttctcccacaccccactctgttgtattgcagGAGAATCAGATAATCGAAATCAACAGAAAATGGAGATGAAAGTCTGGGACCCAGGCAACCCCCTCACAGACCGACAGCATTGACCAATTTCTTGTGGTGGCTCGgtatgtagatgttcagggaggtggcataggtgcattggattgaaatttgc Alignment from Pairagon GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAG-ATTGATCAGTTTCTCGTGGTGGCCCG gtttctgacttatttccctttctcccacaccccactctgttgtattgcagGAGAATCAGATAATCGAAATCAACAGAAAATGGAGATGAAAGTCTGGGACCCAGGCAACCCCCTCACAGACCGACAGCATTGACCAATTTCTTGTGGTGGCTCGgtatgtagatgttcagggaggtggcataggtgcattggattgaaatttgc Alignment from Exonerate_protein2genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAG-ATTGATCAGTTTCTCGTGGTGGCCCG gtttctgacttatttccctttctcccacaccccactctgttgtattgcagGAGAATCAGATAATCGAAATCAACAGAAAATGGAGATGAAAGTCTGGGACCCAGGCAACCCCCTCACAGACCGACAGCATTGACCAATTTCTTGTGGTGGCTCGgtatgtagatgttcagggaggtggcataggtgcattggattgaaatttgc Alignment from Exonerate_coding2genome GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAG-ATTGATCAGTTTCTCGTGGTGGCCCG gtttctgacttatttccctttctcccacaccccactctgttgtattgcagGAGAATCAGATAATCGAAATCAACAGAAAATGGAGATGAAAGTCTGGGACCCAGGCAACCCCCTCACAGACCGACAGCATTGACCAATTTCTTGTGGTGGCTCGgtatgtagatgttcagggaggtggcataggtgcattggattgaaatttgc Alignment from GeneWise GAGAATCAGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAG-ATTGATCAGTTTCTCGTGGTGGCCCG gtttctgacttatttccctttctcccacaccccactctgttgtattgcagGAGAATCAGATAATCGAAATCAACAGAAAATGGAGATGAAAGTCTGGGACCCAGGCAACCCCCTCACAGACCGACAGCATTGACCAATTTCTTGTGGTGGCTCGgtatgtagatgttcagggaggtggcataggtgcattggattgaaatttgc #### Mta2_ID2535_8 --> 1 - 0 Original Alignment aGCTGTGGGAACCTTCGCGAGAGCC-CTAGACTGCAGCAGCTCAATT------CGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaacgtgacttccaataggaagaaccactctcttttgctcatgtgaagtGCTGTGGGAACTTTTGTTAGAGCTCCTAGACTGCACCAGCTCCATCTCAATTCGGCAGTCAAGCTTGCACATGAGTGCA------GCTACCAGAGATATTACTCTGgtatgtgccaactcacagatattttagtacgctaagctaagagtggagcg Alignment from CESAR aGCTGTGGGAACCTTCGCGAGAGCC-CTAGACTGCAGCAGC------TCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaacgtgacttccaataggaagaaccactctcttttgctcatgtgaagtGCTGTGGGAACTTTTGTTAGAGCTCCTAGACTGCACCAGCTCCATCTCAATTCGGCAGTCAAGCTTGCACATGAGTGCAGCT------ACCAGAGATATTACTCTGgtatgtgccaactcacagatattttagtacgctaagctaagagtggagcg Alignment from Spaln_aa2Genome GAGCCCTAGACTGCAGCAGC------TCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaacgtgacttccaataggaagaaccactctcttttgctcatgtgaagtgctgtgggaacttttgttagAGCTCCTAGACTGCACCAGCTCCATCTCAATTCGGCAGTCAAGCTTGCACATGAGTGCAGCTACC------AGAGATATTACTCTGgtatgtgccaactcacagatattttagtacgctaagctaagagtggagcg Alignment from Spaln_nt2Genome AGCTGTGGGAACCTTCGCGAGAGC-CCTAGACTGCAGCAGCTC------AATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaacgtgacttccaataggaagaaccactctcttttgctcatgtgaagTGCTGTGGGAACTTTTGTTAGAGCTCCTAGACTGCACCAGCTCCATCTCAATTCGGCAGTCAAGCTTGCACATGAGTGCAGCT------ACCAGAGATATTACTCTGgtatgtgccaactcacagatattttagtacgctaagctaagagtggagcg Alignment from Pairagon AGCTGTGGGAACCTTCGCGAGAGC-CCTAGACTGCAGCAG------CTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaacgtgacttccaataggaagaaccactctcttttgctcatgtgaagTGCTGTGGGAACTTTTGTTAGAGCTCCTAGACTGCACCAGCTCCATCTCAATTCGGCAGTCAAGCTTGCACATGAGTGCAGCTA------CCAGAGATATTACTCTGgtatgtgccaactcacagatattttagtacgctaagctaagagtggagcg Alignment from Exonerate_protein2genome AGCTGTGGGAACCTTCGCGAGAGCC-CTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaacgtgacttccaataggaagaaccactctcttttgctcatgtgaagTGCTGTGGGAACTTTTGTTAGAGCTCCTAGACTGCACCAGCTCCATCTCAATTCGGCAGTCAAGCTTGCACATGAGTGCAGCTACCAGAGATATTACTCTGgtatgtgccaactcacagatattttagtacgctaagctaagagtggagcg Alignment from Exonerate_coding2genome AGCTGTGGGAACCTTCGCGAGAGCC-CTAGACTGCAGCAGCTCAATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaacgtgacttccaataggaagaaccactctcttttgctcatgtgaagTGCTGTGGGAACTTTTGTTAGAGCTCCTAGACTGCACCAGCTCCATCTCAATTCGGCAGTCAAGCTTGCACATGAGTGCAGCTACCAGAGATATTACTCTGgtatgtgccaactcacagatattttagtacgctaagctaagagtggagcg Alignment from GeneWise GAGCCCTAGACTGCAGCAGCTCAATT------CGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACTCTG gctaacgtgacttccaataggaagaaccactctcttttgctcatgtgaagtgctgtgggaacttttgttagAGCTCCTAGACTGCACCAGCTCCATCTCAATTCGGCAGTCAAGCTTGCACATGAGTGCAGCT------ACCAGAGATATTACTCTGgtatgtgccaactcacagatattttagtacgctaagctaagagtggagcg #### Mta2_ID2536_9 --> 0 - 0 Original Alignment TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTG-CTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT ggctgaaaagagagtagcaagcccttacagatgaatcttgtcttccaaagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTGGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCGGTGCCTCTGTCGAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTCGAAGAAGCTTTGGAGAAGTATGGAAAAGATTTCAATGACATCCGCCAGGACTTCgtaactgatcaagaccaagaagggagagaacgatgaggagactgagaacg Alignment from CESAR TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTG-CTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT ggctgaaaagagagtagcaagcccttacagatgaatcttgtcttccaaagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTGGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCGGTGCCTCTGTCGAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTCGAAGAAGCTTTGGAGAAGTATGGAAAAGATTTCAATGACATCCGCCAGGACTTCgtaactgatcaagaccaagaagggagagaacgatgaggagactgagaacg Alignment from Spaln_aa2Genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTG-CTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT ggctgaaaagagagtagcaagcccttacagatgaatcttgtcttccaaagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTGGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCGGTGcCTCTGTCGAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTCGAAGAAGCTTTGGAGAAGTATGGAAAAGATTTCAATGACATCCGCCAGGACTTCgtaactgatcaagaccaagaagggagagaacgatgaggagactgagaacg Alignment from Spaln_nt2Genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTG-CTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT ggctgaaaagagagtagcaagcccttacagatgaatcttgtcttccaaagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTGGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCGGTGCCTCTGTCGAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTCGAAGAAGCTTTGGAGAAGTATGGAAAAGATTTCAATGACATCCGCCAGGACTTCgtaactgatcaagaccaagaagggagagaacgatgaggagactgagaacg Alignment from Pairagon TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTG-CTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT ggctgaaaagagagtagcaagcccttacagatgaatcttgtcttccaaagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTGGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCGGTGCCTCTGTCGAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTCGAAGAAGCTTTGGAGAAGTATGGAAAAGATTTCAATGACATCCGCCAGGACTTCgtaactgatcaagaccaagaagggagagaacgatgaggagactgagaacg Alignment from Exonerate_protein2genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTG-CTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT ggctgaaaagagagtagcaagcccttacagatgaatcttgtcttccaaagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTGGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCGGTGCCTCTGTCGAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTCGAAGAAGCTTTGGAGAAGTATGGAAAAGATTTCAATGACATCCGCCAGGACTTCgtaactgatcaagaccaagaagggagagaacgatgaggagactgagaacg Alignment from Exonerate_coding2genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTG-CTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT ggctgaaaagagagtagcaagcccttacagatgaatcttgtcttccaaagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTGGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCGGTGCCTCTGTCGAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTCGAAGAAGCTTTGGAGAAGTATGGAAAAGATTTCAATGACATCCGCCAGGACTTCgtaactgatcaagaccaagaagggagagaacgatgaggagactgagaacg Alignment from GeneWise TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCG-GTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGATTTCAATGATATCCGCCAGGACTTT ggctgaaaagagagtagcaagcccttacagatgaatcttgtcttccaaagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTGGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCGGTGCCTCTGTCGAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTCGAAGAAGCTTTGGAGAAGTATGGAAAAGATTTCAATGACATCCGCCAGGACTTCgtaactgatcaagaccaagaagggagagaacgatgaggagactgagaacg #### Mta2_ID2538_11 --> 0 - 2 Original Alignment AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTC-TACATCCCCACTta tactgcctgagatgatttaaaatttatcactgtttgtgtctccttcccagAAAAGGTTAAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCCTATATCCCCACTtagtgagtctgccagcattgcaaaacaagaacccctcattggccagggtgac Alignment from CESAR AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTC-TACATCCCCACTta tactgcctgagatgatttaaaatttatcactgtttgtgtctccttcccagAAAAGGTTAAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCCTATATCCCCACTtagtgagtctgccagcattgcaaaacaagaacccctcattggccagggtgac Alignment from Spaln_aa2Genome AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTC-TACATCCCCACTTA tactgcctgagatgatttaaaatttatcactgtttgtgtctccttcccagAAAAGGTTAAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCcTATATCCCCACTTAgtgagtctgccagcattgcaaaacaagaacccctcattggccagggtgac Alignment from Spaln_nt2Genome AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTC-TACATCCCCACTTA tactgcctgagatgatttaaaatttatcactgtttgtgtctccttcccagAAAAGGTTAAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCCTATATCCCCACTTAgtgagtctgccagcattgcaaaacaagaacccctcattggccagggtgac Alignment from Pairagon AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGT-CTACATCCCCACTTA tactgcctgagatgatttaaaatttatcactgtttgtgtctccttcccagAAAAGGTTAAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCCTATATCCCCACTTAgtgagtctgccagcattgcaaaacaagaacccctcattggccagggtgac Alignment from Exonerate_protein2genome AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTC-TACATCCCCACTTA tactgcctgagatgatttaaaatttatcactgtttgtgtctccttcccagAAAAGGTTAAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCCTATATCCCCACTTAgtgagtctgccagcattgcaaaacaagaacccctcattggccagggtgac Alignment from Exonerate_coding2genome AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTC-TACATCCCCACTTA tactgcctgagatgatttaaaatttatcactgtttgtgtctccttcccagAAAAGGTTAAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCCTATATCCCCACTTAgtgagtctgccagcattgcaaaacaagaacccctcattggccagggtgac Alignment from GeneWise AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAACTGAAACAG-GTCTACATCCCCACTTA tactgcctgagatgatttaaaatttatcactgtttgtgtctccttcccagAAAAGGTTAAAAGCTGCTGAAGCAGACAGCAAACTGAAACAGGTCCTATATCCCCACTTAgtgagtctgccagcattgcaaaacaagaacccctcattggccagggtgac #### Mta2_ID2539_12 --> 1 - 1 Original Alignment tACCAAGCCAAACCCTAACCAGATCATTTCT-GTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACa gcttatttcccttactgccatctttctcccagctaggtctgcctctccagtACTAAGCCAAATCCCAACCAGATCATCTCTCGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCCAGAAGGGACTGACTTGTGAGAGCTGTCACagtgagttggaagtgggaacatggttggttagcatggtcccagttggctta Alignment from CESAR tACCAAGCCAAACCCTAACCAGATCATTTCT-GTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACa gcttatttcccttactgccatctttctcccagctaggtctgcctctccagtACTAAGCCAAATCCCAACCAGATCATCTCTCGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCCAGAAGGGACTGACTTGTGAGAGCTGTCACagtgagttggaagtgggaacatggttggttagcatggtcccagttggctta Alignment from Spaln_aa2Genome TACCAAGCCAAACCCTAACCAGATCATTTCT-GTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA gcttatttcccttactgccatctttctcccagctaggtctgcctctccagTACTAAGCCAAATCCCAACCAGATCATCTCTcGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCCAGAAGGGACTGACTTGTGAGAGCTGTCACAgtgagttggaagtgggaacatggttggttagcatggtcccagttggctta Alignment from Spaln_nt2Genome TACCAAGCCAAACCCTAACCAGATCATTTCT-GTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA gcttatttcccttactgccatctttctcccagctaggtctgcctctccagTACTAAGCCAAATCCCAACCAGATCATCTCTCGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCCAGAAGGGACTGACTTGTGAGAGCTGTCACAgtgagttggaagtgggaacatggttggttagcatggtcccagttggctta Alignment from Pairagon TACCAAGCCAAACCCTAACCAGATCATTTCT-GTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA gcttatttcccttactgccatctttctcccagctaggtctgcctctccagTACTAAGCCAAATCCCAACCAGATCATCTCTCGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCCAGAAGGGACTGACTTGTGAGAGCTGTCACAgtgagttggaagtgggaacatggttggttagcatggtcccagttggctta Alignment from Exonerate_protein2genome TACCAAGCCAAACCCTAACCAGATCATTTCT-GTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA gcttatttcccttactgccatctttctcccagctaggtctgcctctccagTACTAAGCCAAATCCCAACCAGATCATCTCTCGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCCAGAAGGGACTGACTTGTGAGAGCTGTCACAgtgagttggaagtgggaacatggttggttagcatggtcccagttggctta Alignment from Exonerate_coding2genome TACCAAGCCAAACCCTAACCAGATCATTTCT-GTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA gcttatttcccttactgccatctttctcccagctaggtctgcctctccagTACTAAGCCAAATCCCAACCAGATCATCTCTCGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCCAGAAGGGACTGACTTGTGAGAGCTGTCACAgtgagttggaagtgggaacatggttggttagcatggtcccagttggctta Alignment from GeneWise TACCAAGCCAAACCCTAACCAGATCATT-TCTGTGGGTTCAAAACCTGGCATGAATGGGGCTGGATTCCAGAAGGGCCTGACTTGTGAGAGCTGCCACA gcttatttcccttactgccatctttctcccagctaggtctgcctctccagTACTAAGCCAAATCCCAACCAGATCATCTCTCGTGGGTTCAAAGCCTGGCATGAATGGGGCTGGATTCCAGAAGGGACTGACTTGTGAGAGCTGTCACAgtgagttggaagtgggaacatggttggttagcatggtcccagttggctta #### Mta2_ID2540_13 --> 2 - 0 Original Alignment ccACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGA-CTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA aaggatcactgtagcgccagcataattcggacatgcttctatcttctcagcaACACAGTCTGCACAGTGGTATGCCTGGGGACCGCCTAACATGCAGTACCGACCTTTGTGCTTCCTGTTGGGTTTATTGGAAAAAATATGGGGGCTTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGAGCACCACAgtaagtgtgagtgggttggaaaccagcatgggaactgagccagaggggga Alignment from CESAR ccACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGA-CTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA aaggatcactgtagcgccagcataattcggacatgcttctatcttctcagcaACACAGTCTGCACAGTGGTATGCCTGGGGACCGCCTAACATGCAGTACCGACCTTTGTGCTTCCTGTTGGGTTTATTGGAAAAAATATGGGGGCTTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGAGCACCACAgtaagtgtgagtgggttggaaaccagcatgggaactgagccagaggggga Alignment from Spaln_aa2Genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGA-CTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA aaggatcactgtagcgccagcataattcggacatgcttctatcttctcagCAACACAGTCTGCACAGTGGTATGCCTGGGGACCGCCTAACATGCAGTACCGAcCTTTGTGCTTCCTGTTGGGTTTATTGGAAAAAATATGGGGGCTTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGAGCACCACAgtaagtgtgagtgggttggaaaccagcatgggaactgagccagaggggga Alignment from Spaln_nt2Genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGA-CTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA aaggatcactgtagcgccagcataattcggacatgcttctatcttctcagCAACACAGTCTGCACAGTGGTATGCCTGGGGACCGCCTAACATGCAGTACCGACCTTTGTGCTTCCTGTTGGGTTTATTGGAAAAAATATGGGGGCTTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGAGCACCACAgtaagtgtgagtgggttggaaaccagcatgggaactgagccagaggggga Alignment from Pairagon CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGA-CTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA aaggatcactgtagcgccagcataattcggacatgcttctatcttctcagCAACACAGTCTGCACAGTGGTATGCCTGGGGACCGCCTAACATGCAGTACCGACCTTTGTGCTTCCTGTTGGGTTTATTGGAAAAAATATGGGGGCTTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGAGCACCACAgtaagtgtgagtgggttggaaaccagcatgggaactgagccagaggggga Alignment from Exonerate_protein2genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGA-CTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA aaggatcactgtagcgccagcataattcggacatgcttctatcttctcagCAACACAGTCTGCACAGTGGTATGCCTGGGGACCGCCTAACATGCAGTACCGACCTTTGTGCTTCCTGTTGGGTTTATTGGAAAAAATATGGGGGCTTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGAGCACCACAgtaagtgtgagtgggttggaaaccagcatgggaactgagccagaggggga Alignment from Exonerate_coding2genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGA-CTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA aaggatcactgtagcgccagcataattcggacatgcttctatcttctcagCAACACAGTCTGCACAGTGGTATGCCTGGGGACCGCCTAACATGCAGTACCGACCTTTGTGCTTCCTGTTGGGTTTATTGGAAAAAATATGGGGGCTTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGAGCACCACAgtaagtgtgagtgggttggaaaccagcatgggaactgagccagaggggga Alignment from GeneWise CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGA-CTTTGTGCTTCCTGTTGGATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA aaggatcactgtagcgccagcataattcggacatgcttctatcttctcagCAACACAGTCTGCACAGTGGTATGCCTGGGGACCGCCTAACATGCAGTACCGACCTTTGTGCTTCCTGTTGGGTTTATTGGAAAAAATATGGGGGCTTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGAGCACCACAgtaagtgtgagtgggttggaaaccagcatgggaactgagccagaggggga #### Mta2_ID2542_15 --> 2 - 1 Original Alignment gcTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTG-CGGCTGCCCTTGGCAACTATCGTCAAAGATCTGg gccaagcacccaggagatccttctctcatttctcccctttaaacccacaggcTCAATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTTGTGCCGGCTGCCCTTGGCAACTATCATCAAAGATCTGggtaagtaggatgacttttcaagctaggtcagatcttctatctctttccac Alignment from CESAR gcTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTG-CGGCTGCCCTTGGCAACTATCGTCAAAGATCTGg gccaagcacccaggagatccttctctcatttctcccctttaaacccacaggcTCAATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTTGTGCCGGCTGCCCTTGGCAACTATCATCAAAGATCTGggtaagtaggatgacttttcaagctaggtcagatcttctatctcgtcattc Alignment from Spaln_aa2Genome GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTG-CGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG gccaagcacccaggagatccttctctcatttctcccctttaaacccacagGCTCAATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTTGTGcCGGCTGCCCTTGGCAACTATCATCAAAGATCTGGgtaagtaggatgacttttcaagctaggtcagatcttctatctctttccac Alignment from Spaln_nt2Genome GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTG-CGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG gccaagcacccaggagatccttctctcatttctcccctttaaacccacagGCTCAATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTTGTGCCGGCTGCCCTTGGCAACTATCATCAAAGATCTGGgtaagtaggatgacttttcaagctaggtcagatcttctatctctttccac Alignment from Pairagon GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTG-CGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG gccaagcacccaggagatccttctctcatttctcccctttaaacccacagGCTCAATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTTGTGCCGGCTGCCCTTGGCAACTATCATCAAAGATCTGGgtaagtaggatgacttttcaagctaggtcagatcttctatctctttccac Alignment from Exonerate_protein2genome GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTG-CGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG gccaagcacccaggagatccttctctcatttctcccctttaaacccacagGCTCAATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTTGTGCCGGCTGCCCTTGGCAACTATCATCAAAGATCTGGgtaagtaggatgacttttcaagctaggtcagatcttctatctctttccac Alignment from Exonerate_coding2genome GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTGGTG-CGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG gccaagcacccaggagatccttctctcatttctcccctttaaacccacagGCTCAATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTTGTGCCGGCTGCCCTTGGCAACTATCATCAAAGATCTGGgtaagtaggatgacttttcaagctaggtcagatcttctatctctttccac Alignment from GeneWise GCTCGATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTG-GTGCGGCTGCCCTTGGCAACTATCGTCAAAGATCTGG gccaagcacccaggagatccttctctcatttctcccctttaaacccacagGCTCAATCCGACTTCCTAAGGCTGCCAAGACGCCACTGAAAATTCACCCTCTTGTGCCGGCTGCCCTTGGCAACTATCATCAAAGATCTGGgtaagtaggatgacttttcaagctaggtcagatcttctatctctttccac #### Mta2_ID2543_16 --> 2 - 0 Original Alignment tgGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAA-CGTTCCTATGAGACT tttcaagctaggtcagatcttctatctcgtcattcgtcttcgctgcccagtgGCTCAGGCACTTCTAAAGCCAAAAACGCCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACCGTTCCTATGAGACTgtgaagtgagcagaataaaagcagagcaggttaattatttttttttttta Alignment from CESAR tgGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAA-CGTTCCTATGAGACT tttcaagctaggtcagatcttctatctcgtcattcgtcttcgctgcccagtgGCTCAGGCACTTCTAAAGCCAAAAACGCCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACCGTTCCTATGAGACTgtgaagtgagcagaataaaagcagagcaggttaattatttttttttttta Alignment from Spaln_aa2Genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAA-CGTTCCTATGAGACT tttcaagctaggtcagatcttctatctcgtcattcgtcttcgctgcccagTGGCTCAGGCACTTCTAAAGCCAAAAACGCCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAAcCGTTCCTATGAGACTgtgaagtgagcagaataaaagcagagcaggttaattatttttttttttta Alignment from Spaln_nt2Genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAAC-GTTCCTATGAGACT tttcaagctaggtcagatcttctatctcgtcattcgtcttcgctgcccagTGGCTCAGGCACTTCTAAAGCCAAAAACGCCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACCGTTCCTATGAGACTgtgaagtgagcagaataaaagcagagcaggttaattatttttttttttta Alignment from Pairagon TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAA-CGTTCCTATGAGACT tttcaagctaggtcagatcttctatctcgtcattcgtcttcgctgcccagTGGCTCAGGCACTTCTAAAGCCAAAAACGCCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACCGTTCCTATGAGACTgtgaagtgagcagaataaaagcagagcaggttaattatttttttttttta Alignment from Exonerate_protein2genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAA-CGTTCCTATGAGACT tttcaagctaggtcagatcttctatctcgtcattcgtcttcgctgcccagTGGCTCAGGCACTTCTAAAGCCAAAAACGCCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACCGTTCCTATGAGACTgtgaagtgagcagaataaaagcagagcaggttaattatttttttttttta Alignment from Exonerate_coding2genome TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAA-CGTTCCTATGAGACT tttcaagctaggtcagatcttctatctcgtcattcgtcttcgctgcccagTGGCTCAGGCACTTCTAAAGCCAAAAACGCCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACCGTTCCTATGAGACTgtgaagtgagcagaataaaagcagagcaggttaattatttttttttttta Alignment from GeneWise TGGCTCAGGCACCTCTGAAACCAAAAACACCTCGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTG-AAACGTTCCTATGAGACT tttcaagctaggtcagatcttctatctcgtcattcgtcttcgctgcccagTGGCTCAGGCACTTCTAAAGCCAAAAACGCCTAGGGGTACCAAGACACCAATCAACAGAAACCAGCTGACCCAGAATCGAGGCCTGGGGGGCATTATGGTGAAACCGTTCCTATGAGACTgtgaagtgagcagaataaaagcagagcaggttaattatttttttttttta #### Myrf_ID2720_17 --> 0 - 2 Original Alignment TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAG-GGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCag cctgactctactatctagtgctgtgtttgttttttcttactctattttagTCATCATCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGCGGAACTATCATAGCTCTCGTGGTAGTCATGGCCTTCaggtgagccccttcactagggaggcttctttaaaaggccacacagtgagtca Alignment from CESAR TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAG-GGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCag cctgactctactatctagtgctgtgtttgttttttcttactctattttagTCATCATCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGCGGAACTATCATAGCTCTCGTGGTAGTCATGGCCTTCaggtgagccccttcactagggaggcttctttaaaaggccacacagtgagtca Alignment from Spaln_aa2Genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAG-GGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctgactctactatctagtgctgtgtttgttttttcttactctattttagTCATCATCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGcGGAACTATCATAGCTCTCGTGGTAGTCATGGCCTTCAGgtgagccccttcactagggaggcttctttaaaaggccacacagtgagtca Alignment from Spaln_nt2Genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAG-GGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctgactctactatctagtgctgtgtttgttttttcttactctattttagTCATCATCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGCGGAACTATCATAGCTCTCGTGGTAGTCATGGCCTTCAGgtgagccccttcactagggaggcttctttaaaaggccacacagtgagtca Alignment from Pairagon TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAG-GGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctgactctactatctagtgctgtgtttgttttttcttactctattttagTCATCATCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGCGGAACTATCATAGCTCTCGTGGTAGTCATGGCCTTCAGgtgagccccttcactagggaggcttctttaaaaggccacacagtgagtca Alignment from Exonerate_protein2genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAG-GGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctgactctactatctagtgctgtgtttgttttttcttactctattttagTCATCATCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGCGGAACTATCATAGCTCTCGTGGTAGTCATGGCCTTCAGgtgagccccttcactagggaggcttctttaaaaggccacacagtgagtca Alignment from Exonerate_coding2genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTGCAG-GGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctgactctactatctagtgctgtgtttgttttttcttactctattttagTCATCATCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGCGGAACTATCATAGCTCTCGTGGTAGTCATGGCCTTCAGgtgagccccttcactagggaggcttctttaaaaggccacacagtgagtca Alignment from GeneWise TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGTCAGCGTTTTCTG-CAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG cctgactctactatctagtgctgtgtttgttttttcttactctattttagTCATCATCAGCAGTCCCAGACCAAGCCTGCATCAGTCAGCGTTTTCTGCAGCGGAACTATCATAGCTCTCGTGGTAGTCATGGCCTTCAGgtgagccccttcactagggaggcttctttaaaaggccacacagtgagtca #### Myrf_ID2721_16 --> 1 - 0 Original Alignment cCATGCAGGGAGCCAGTTTAGC-CGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG ggaggtgcagtaggtgagcctgcatttccttaatgtattttttttaatagtCATGCAGGGAGTGAGTTTAGTCAGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAGgtacaactgtgcaagagtgaaaggcttctactcacctgttggttctatct Alignment from CESAR cCATGCAGGGAGCCAGTTTAGC-CGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG ggaggtgcagtaggtgagcctgcatttccttaatgtattttttttaatagtCATGCAGGGAGTGAGTTTAGTCAGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAGgtacaactgtgcaagagtgaaaggcttctactcacctgttggttctatct Alignment from Spaln_aa2Genome CCATGCAGGGAGCCAGTTTAGC-CGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG ggaggtgcagtaggtgagcctgcatttccttaatgtattttttttaatagTCATGCAGGGAGTGAGTTTAGTcAGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAGgtacaactgtgcaagagtgaaaggcttctactcacctgttggttctatct Alignment from Spaln_nt2Genome CCATGCAGGGAGCCAGTTTAGCC-GGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG ggaggtgcagtaggtgagcctgcatttccttaatgtattttttttaatagTCATGCAGGGAGTGAGTTTAGTCAGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAGgtacaactgtgcaagagtgaaaggcttctactcacctgttggttctatct Alignment from Pairagon CCATGCAGGGAGCCAGTTTAGCC-GGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG ggaggtgcagtaggtgagcctgcatttccttaatgtattttttttaatagTCATGCAGGGAGTGAGTTTAGTCAGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAGgtacaactgtgcaagagtgaaaggcttctactcacctgttggttctatct Alignment from Exonerate_protein2genome CCATGCAGGGAGCCAGTTTAGC-CGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG ggaggtgcagtaggtgagcctgcatttccttaatgtattttttttaatagTCATGCAGGGAGTGAGTTTAGTCAGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAGgtacaactgtgcaagagtgaaaggcttctactcacctgttggttctatct Alignment from Exonerate_coding2genome CCATGCAGGGAGCCAGTTTAGC-CGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG ggaggtgcagtaggtgagcctgcatttccttaatgtattttttttaatagTCATGCAGGGAGTGAGTTTAGTCAGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAGgtacaactgtgcaagagtgaaaggcttctactcacctgttggttctatct Alignment from GeneWise CCATGCAGGGAGCCAGTTT-AGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG ggaggtgcagtaggtgagcctgcatttccttaatgtattttttttaatagTCATGCAGGGAGTGAGTTTAGTCAGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAGgtacaactgtgcaagagtgaaaggcttctactcacctgttggttctatct #### Myrf_ID2723_14 --> 2 - 0 Original Alignment gtGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTC-TTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagattcctggttccaagaccacacacatctgacactccctcccataggtGTCATTGCCCAGGAGGTGAAGGAGATTTTGCCTGAAGCTGTGGAGGACACAGGGGATGTGGTCCTTTGCAAATGGAAAAAGCATAGAGAACTTCCTTGTAGTGAACAAAgtgacatataggatccaatgtggctctgggttcgagcatggcaagctgga Alignment from CESAR gtGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTC-TTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagattcctggttccaagaccacacacatctgacactccctcccataggtGTCATTGCCCAGGAGGTGAAGGAGATTTTGCCTGAAGCTGTGGAGGACACAGGGGATGTGGTCCTTTGCAAATGGAAAAAGCATAGAGAACTTCCTTGTAGTGAACAAAgtgacatataggatccaatgtggctctgggttcgagcatggcaagctgga Alignment from Spaln_aa2Genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTC-TTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagattcctggttccaagaccacacacatctgacactccctcccatagGTGTCATTGCCCAGGAGGTGAAGGAGATTTTGCCTGAAGCTGTGGAGGACACAGGGGATGTGGTCcTTTGCAAATGGAAAAAGCATAGAGAACTTCCTTGTAGTGAACAAAgtgacatataggatccaatgtggctctgggttcgagcatggcaagctgga Alignment from Spaln_nt2Genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGT-CTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagattcctggttccaagaccacacacatctgacactccctcccatagGTGTCATTGCCCAGGAGGTGAAGGAGATTTTGCCTGAAGCTGTGGAGGACACAGGGGATGTGGTCCTTTGCAAATGGAAAAAGCATAGAGAACTTCCTTGTAGTGAACAAAgtgacatataggatccaatgtggctctgggttcgagcatggcaagctgga Alignment from Pairagon GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGT-CTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagattcctggttccaagaccacacacatctgacactccctcccatagGTGTCATTGCCCAGGAGGTGAAGGAGATTTTGCCTGAAGCTGTGGAGGACACAGGGGATGTGGTCCTTTGCAAATGGAAAAAGCATAGAGAACTTCCTTGTAGTGAACAAAgtgacatataggatccaatgtggctctgggttcgagcatggcaagctgga Alignment from Exonerate_protein2genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTC-TTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagattcctggttccaagaccacacacatctgacactccctcccatagGTGTCATTGCCCAGGAGGTGAAGGAGATTTTGCCTGAAGCTGTGGAGGACACAGGGGATGTGGTCCTTTGCAAATGGAAAAAGCATAGAGAACTTCCTTGTAGTGAACAAAgtgacatataggatccaatgtggctctgggttcgagcatggcaagctgga Alignment from Exonerate_coding2genome GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTAGTC-TTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagattcctggttccaagaccacacacatctgacactccctcccatagGTGTCATTGCCCAGGAGGTGAAGGAGATTTTGCCTGAAGCTGTGGAGGACACAGGGGATGTGGTCCTTTGCAAATGGAAAAAGCATAGAGAACTTCCTTGTAGTGAACAAAgtgacatataggatccaatgtggctctgggttcgagcatggcaagctgga Alignment from GeneWise GTGTCATCGCCCAGGAAGTGAAGGAGATCCTGCCTGAAGCTGTGAAGGACACAGGGGATGTA-GTCTTTGCCAATGGGAAAACCATAGAGAACTTCCTTGTAGTGAACAAG ggtagattcctggttccaagaccacacacatctgacactccctcccatagGTGTCATTGCCCAGGAGGTGAAGGAGATTTTGCCTGAAGCTGTGGAGGACACAGGGGATGTGGTCCTTTGCAAATGGAAAAAGCATAGAGAACTTCCTTGTAGTGAACAAAgtgacatataggatccaatgtggctctgggttcgagcatggcaagctgga #### Myrf_ID2724_13 --> 0 - 1 Original Alignment GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTG-CACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAg gtgattacaggaggatgggaggattcagtcctgtctttccatctttgcagGTTGATACCACTGAACACCTAAAGAGGATCTCACGGATGCGGTTAGTGCCACTACAGGTACAAGCCTGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAggtacgagtgtgcgtctgaggggtccctagctatgcctgaatccatctcta Alignment from CESAR GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTG-CACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAg gtgattacaggaggatgggaggattcagtcctgtctttccatctttgcagGTTGATACCACTGAACACCTAAAGAGGATCTCACGGATGCGGTTAGTGCCACTACAGGTACAAGCCTGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAggtacgagtgtgcgtctgaggggtccctagctatgcctgaatccatctcta Alignment from Spaln_aa2Genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTG-CACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattacaggaggatgggaggattcagtcctgtctttccatctttgcagGTTGATACCACTGAACACCTAAAGAGGATCTCACGGATGCGGTTAGTGcCACTACAGGTACAAGCCTGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtacgagtgtgcgtctgaggggtccctagctatgcctgaatccatctcta Alignment from Spaln_nt2Genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGC-ACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattacaggaggatgggaggattcagtcctgtctttccatctttgcagGTTGATACCACTGAACACCTAAAGAGGATCTCACGGATGCGGTTAGTGCCACTACAGGTACAAGCCTGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtacgagtgtgcgtctgaggggtccctagctatgcctgaatccatctcta Alignment from Pairagon GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTG-CACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattacaggaggatgggaggattcagtcctgtctttccatctttgcagGTTGATACCACTGAACACCTAAAGAGGATCTCACGGATGCGGTTAGTGCCACTACAGGTACAAGCCTGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtacgagtgtgcgtctgaggggtccctagctatgcctgaatccatctcta Alignment from Exonerate_protein2genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTG-CACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattacaggaggatgggaggattcagtcctgtctttccatctttgcagGTTGATACCACTGAACACCTAAAGAGGATCTCACGGATGCGGTTAGTGCCACTACAGGTACAAGCCTGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtacgagtgtgcgtctgaggggtccctagctatgcctgaatccatctcta Alignment from Exonerate_coding2genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTG-CACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattacaggaggatgggaggattcagtcctgtctttccatctttgcagGTTGATACCACTGAACACCTAAAGAGGATCTCACGGATGCGGTTAGTGCCACTACAGGTACAAGCCTGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtacgagtgtgcgtctgaggggtccctagctatgcctgaatccatctcta Alignment from GeneWise GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTG-GTGCACTACAGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgattacaggaggatgggaggattcagtcctgtctttccatctttgcagGTTGATACCACTGAACACCTAAAGAGGATCTCACGGATGCGGTTAGTGCCACTACAGGTACAAGCCTGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtacgagtgtgcgtctgaggggtccctagctatgcctgaatccatctcta #### Myrf_ID2726_11 --> 1 - 0 Original Alignment gTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTG-GCAGCCCAGATCTCAGAGCGTATCATTGTGCGG gagaatgggtacaggtatccctggatgtccacctccctactctccaacaggTATTTCATGCTGGTGGTTGCCCTCCAGGCACATGCACAGAACCAAAACTACACCCTGCGCAGCCCAGATTTCGGAGCGTATCATTGTGCGGgtgagcatcattcctccttatccttaaaggtaatgtcctccccatcctct Alignment from CESAR gTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTG-GCAGCCCAGATCTCAGAGCGTATCATTGTGCGG gagaatgggtacaggtatccctggatgtccacctccctactctccaacaggTATTTCATGCTGGTGGTTGCCCTCCAGGCACATGCACAGAACCAAAACTACACCCTGCGCAGCCCAGATTTCGGAGCGTATCATTGTGCGGgtgagcatcattcctccttatccttaaaggtaatgtcctccccatcctct Alignment from Spaln_aa2Genome GTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTG-GCAGCCCAGATCTCAGAGCGTATCATTGTGCGG gagaatgggtacaggtatccctggatgtccacctccctactctccaacagGTATTTCATGCTGGTGGTTGCCCTCCAGGCACATGCACAGAACCAAAACTACACCCTGcGCAGCCCAGATTTCGGAGCGTATCATTGTGCGGgtgagcatcattcctccttatccttaaaggtaatgtcctccccatcctct Alignment from Spaln_nt2Genome GTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTG-GCAGCCCAGATCTCAGAGCGTATCATTGTGCGG gagaatgggtacaggtatccctggatgtccacctccctactctccaacagGTATTTCATGCTGGTGGTTGCCCTCCAGGCACATGCACAGAACCAAAACTACACCCTGCGCAGCCCAGATTTCGGAGCGTATCATTGTGCGGgtgagcatcattcctccttatccttaaaggtaatgtcctccccatcctct Alignment from Pairagon GTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTG-GCAGCCCAGATCTCAGAGCGTATCATTGTGCGG gagaatgggtacaggtatccctggatgtccacctccctactctccaacagGTATTTCATGCTGGTGGTTGCCCTCCAGGCACATGCACAGAACCAAAACTACACCCTGCGCAGCCCAGATTTCGGAGCGTATCATTGTGCGGgtgagcatcattcctccttatccttaaaggtaatgtcctccccatcctct Alignment from Exonerate_protein2genome GTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTG-GCAGCCCAGATCTCAGAGCGTATCATTGTGCGG gagaatgggtacaggtatccctggatgtccacctccctactctccaacagGTATTTCATGCTGGTGGTTGCCCTCCAGGCACATGCACAGAACCAAAACTACACCCTGCGCAGCCCAGATTTCGGAGCGTATCATTGTGCGGgtgagcatcattcctccttatccttaaaggtaatgtcctccccatcctct Alignment from Exonerate_coding2genome GTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTG-GCAGCCCAGATCTCAGAGCGTATCATTGTGCGG gagaatgggtacaggtatccctggatgtccacctccctactctccaacagGTATTTCATGCTGGTGGTTGCCCTCCAGGCACATGCACAGAACCAAAACTACACCCTGCGCAGCCCAGATTTCGGAGCGTATCATTGTGCGGgtgagcatcattcctccttatccttaaaggtaatgtcctccccatcctct Alignment from GeneWise GTATTTCATGCTGGTGGTGGCCCTCCAGGCACATGCACAGAACCAGAACTACACACTG-GCAGCCCAGATCTCAGAGCGTATCATTGTGCGG gagaatgggtacaggtatccctggatgtccacctccctactctccaacagGTATTTCATGCTGGTGGTTGCCCTCCAGGCACATGCACAGAACCAAAACTACACCCTGCGCAGCCCAGATTTCGGAGCGTATCATTGTGCGGgtgagcatcattcctccttatccttaaaggtaatgtcctccccatcctct #### Naa40_ID2075_5 --> 1 - 2 Original Alignment gTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATG-ACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACtg atctggtactagagggcagtctactgatattccgtgaacatattttacaggTATGAGCAAAGTGAATGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGCACTGATGATCGTGCCTGGTACCTCATTGCGTGGGAAAACAGTTCCATCCCAGTTGCCTTCTCTCACTTCCGGTTTGATGTGGAGTGTGGGGATGAGGTCTTGTATtggtgagcacttatgccttcagtataggcacttacgccattagtggaataga Alignment from CESAR gTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATG-ACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACtg atctggtactagagggcagtctactgatattccgtgaacatattttacaggTATGAGCAAAGTGAATGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGCACTGATGATCGTGCCTGGTACCTCATTGCGTGGGAAAACAGTTCCATCCCAGTTGCCTTCTCTCACTTCCGGTTTGATGTGGAGTGTGGGGATGAGGTCTTGTATtggtgagcacttatgccttcagtataggcacttacgccattagtggaataga Alignment from Spaln_aa2Genome GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATG-ACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG atctggtactagagggcagtctactgatattccgtgaacatattttacagGTATGAGCAAAGTGAATGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGcACTGATGATCGTGCCTGGTACCTCATTGCGTGGGAAAACAGTTCCATCCCAGTTGCCTTCTCTCACTTCCGGTTTGATGTGGAGTGTGGGGATGAGGTCTTGTATTGgtgagcacttatgccttcagtataggcacttacgccattagtggaataga Alignment from Spaln_nt2Genome GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATG-ACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG atctggtactagagggcagtctactgatattccgtgaacatattttacagGTATGAGCAAAGTGAATGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGCACTGATGATCGTGCCTGGTACCTCATTGCGTGGGAAAACAGTTCCATCCCAGTTGCCTTCTCTCACTTCCGGTTTGATGTGGAGTGTGGGGATGAGGTCTTGTATTGgtgagcacttatgccttcagtataggcacttacgccattagtggaataga Alignment from Pairagon GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATG-ACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG atctggtactagagggcagtctactgatattccgtgaacatattttacagGTATGAGCAAAGTGAATGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGCACTGATGATCGTGCCTGGTACCTCATTGCGTGGGAAAACAGTTCCATCCCAGTTGCCTTCTCTCACTTCCGGTTTGATGTGGAGTGTGGGGATGAGGTCTTGTATTGgtgagcacttatgccttcagtataggcacttacgccattagtggaataga Alignment from Exonerate_protein2genome GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATG-ACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG atctggtactagagggcagtctactgatattccgtgaacatattttacagGTATGAGCAAAGTGAATGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGCACTGATGATCGTGCCTGGTACCTCATTGCGTGGGAAAACAGTTCCATCCCAGTTGCCTTCTCTCACTTCCGGTTTGATGTGGAGTGTGGGGATGAGGTCTTGTATTGgtgagcacttatgccttcagtataggcacttacgccattagtggaataga Alignment from Exonerate_coding2genome GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATG-ACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG atctggtactagagggcagtctactgatattccgtgaacatattttacagGTATGAGCAAAGTGAATGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGCACTGATGATCGTGCCTGGTACCTCATTGCGTGGGAAAACAGTTCCATCCCAGTTGCCTTCTCTCACTTCCGGTTTGATGTGGAGTGTGGGGATGAGGTCTTGTATTGgtgagcacttatgccttcagtataggcacttacgccattagtggaataga Alignment from GeneWise GTATGAGCAAAGTGAGTGGGGCTGGAAGGACCGAGAAAAACGGGAGGAAATG-ACCGATGACCGAGCCTGGTACCTCATTGCTTGGGAAAACAGTTCCATCCCAGTTGCCTTTTCTCACTTCCGGTTTGATGTGGAGTGCGGGGATGAAGTCCTGTACTG atctggtactagagggcagtctactgatattccgtgaacatattttacagGTATGAGCAAAGTGAATGGGGCTGGAAGGACCGGGAAAAGCGGGAGGAAATGCACTGATGATCGTGCCTGGTACCTCATTGCGTGGGAAAACAGTTCCATCCCAGTTGCCTTCTCTCACTTCCGGTTTGATGTGGAGTGTGGGGATGAGGTCTTGTATTGgtgagcacttatgccttcagtataggcacttacgccattagtggaataga #### Naaladl1_ID1443_2 --> 1 - 1 Original Alignment aGAACTCTCCAAGGAACCACAC-GTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCg cagaggcttcgaccgctgatggattttaaccgctgacttttttgttacagaGAACTTGCAAAGGAACCACATCGTGGCCACCAGCACTCGGGATGATGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACTCAGCCAAGACCTATGAGTATCGGGTGTTGCTCTCTTTCCCCAATGCAGAGCAGGCTAACAGTGTGGAGGTTggtaggttcaagtctaggaatgtcagggggggatggcttttctttccttca Alignment from CESAR aGAACTCTCCAAGGAACCACAC-GTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCg cagaggcttcgaccgctgatggattttaaccgctgacttttttgttacagaGAACTTGCAAAGGAACCACATCGTGGCCACCAGCACTCGGGATGATGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACTCAGCCAAGACCTATGAGTATCGGGTGTTGCTCTCTTTCCCCAATGCAGAGCAGGCTAACAGTGTGGAGGTTggtaggttcaagtctaggaatgtcagggggggatggttcttttttttttta Alignment from Spaln_aa2Genome AGAACTCTCCAAGGAACCACAC-GTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG cagaggcttcgaccgctgatggattttaaccgctgacttttttgttacagAGAACTTGCAAAGGAACCACATcGTGGCCACCAGCACTCGGGATGATGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACTCAGCCAAGACCTATGAGTATCGGGTGTTGCTCTCTTTCCCCAATGCAGAGCAGGCTAACAGTGTGGAGGTTGgtaggttcaagtctaggaatgtcagggggggatggcttttctttccttca Alignment from Spaln_nt2Genome AGAACTCTCCAAGGAACCACA-CGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG cagaggcttcgaccgctgatggattttaaccgctgacttttttgttacagAGAACTTGCAAAGGAACCACATCGTGGCCACCAGCACTCGGGATGATGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACTCAGCCAAGACCTATGAGTATCGGGTGTTGCTCTCTTTCCCCAATGCAGAGCAGGCTAACAGTGTGGAGGTTGgtaggttcaagtctaggaatgtcagggggggatggcttttctttccttca Alignment from Pairagon AGAACTCTCCAAGGAACCACA-CGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG cagaggcttcgaccgctgatggattttaaccgctgacttttttgttacagAGAACTTGCAAAGGAACCACATCGTGGCCACCAGCACTCGGGATGATGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACTCAGCCAAGACCTATGAGTATCGGGTGTTGCTCTCTTTCCCCAATGCAGAGCAGGCTAACAGTGTGGAGGTTGgtaggttcaagtctaggaatgtcagggggggatggcttttctttccttca Alignment from Exonerate_protein2genome AGAACTCTCCAAGGAACCACAC-GTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG cagaggcttcgaccgctgatggattttaaccgctgacttttttgttacagAGAACTTGCAAAGGAACCACATCGTGGCCACCAGCACTCGGGATGATGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACTCAGCCAAGACCTATGAGTATCGGGTGTTGCTCTCTTTCCCCAATGCAGAGCAGGCTAACAGTGTGGAGGTTGgtaggttcaagtctaggaatgtcagggggggatggcttttctttccttca Alignment from Exonerate_coding2genome AGAACTCTCCAAGGAACCACAC-GTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG cagaggcttcgaccgctgatggattttaaccgctgacttttttgttacagAGAACTTGCAAAGGAACCACATCGTGGCCACCAGCACTCGGGATGATGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACTCAGCCAAGACCTATGAGTATCGGGTGTTGCTCTCTTTCCCCAATGCAGAGCAGGCTAACAGTGTGGAGGTTGgtaggttcaagtctaggaatgtcagggggggatggcttttctttccttca Alignment from GeneWise AGAACTCTCCAAGGAACCACAC-GTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTC--------------------------------------------------- cagaggcttcgaccgctgatggattttaaccgctgacttttttgttacagAGAACTTGCAAAGGAACCACATCGTGGCCACCAGCACTCGGGATGATGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCTGGACTGGACTCAGCCAAGACCTATGAGTATCGGGTGTTGCTCTCTTTCCCCAATGCAGAGCAGGCTAACAGTGTGGAGGTTGGTAGGTTCAAGTCTAGGAATGTCAGGGGGGGATGGCTTTTCTTTCCTTCA #### Naaladl1_ID1447_6 --> 1 - 2 Original Alignment tAACCTCACCGGAACCTCTGCCCCTGCC-TTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGag aattgaaggtaatgagactgcctaccctgtgctctgtgtgtcttgctcagtAACCTCACGGGAACCTCTGCCCCTACTCTTCTGGCAGAGAGCCCTAGGCTGTGAATACAAACTAGGACCTGGATTTGAGCCAAACGAAAGCTTCCCTGATGGGaggtgagacaggacatcctttatctatcccttccttcacttgttggtttgtt Alignment from CESAR tAACCTCACCGGAACCTCTGCCCCTGCC-TTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGag aattgaaggtaatgagactgcctaccctgtgctctgtgtgtcttgctcagtAACCTCACGGGAACCTCTGCCCCTACTCTTCTGGCAGAGAGCCCTAGGCTGTGAATACAAACTAGGACCTGGATTTGAGCCAAACGAAAGCTTCCCTGATGGGaggtgagacaggacatcctttatctatcccttccttcacttgttggtttgtt Alignment from Spaln_aa2Genome TAACCTCACCGGAACCTCTGCCCCTGCC-TTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgaaggtaatgagactgcctaccctgtgctctgtgtgtcttgctcagTAACCTCACGGGAACCTCTGCCCCTACTcTTCTGGCAGAGAGCCCTAGGCTGTGAATACAAACTAGGACCTGGATTTGAGCCAAACGAAAGCTTCCCTGATGGGAGgtgagacaggacatcctttatctatcccttccttcacttgttggtttgtt Alignment from Spaln_nt2Genome TAACCTCACCGGAACCTCTGCCCCTGC-CTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgaaggtaatgagactgcctaccctgtgctctgtgtgtcttgctcagTAACCTCACGGGAACCTCTGCCCCTACTCTTCTGGCAGAGAGCCCTAGGCTGTGAATACAAACTAGGACCTGGATTTGAGCCAAACGAAAGCTTCCCTGATGGGAGgtgagacaggacatcctttatctatcccttccttcacttgttggtttgtt Alignment from Pairagon TAACCTCACCGGAACCTCTGCCCCTGC-CTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgaaggtaatgagactgcctaccctgtgctctgtgtgtcttgctcagTAACCTCACGGGAACCTCTGCCCCTACTCTTCTGGCAGAGAGCCCTAGGCTGTGAATACAAACTAGGACCTGGATTTGAGCCAAACGAAAGCTTCCCTGATGGGAGgtgagacaggacatcctttatctatcccttccttcacttgttggtttgtt Alignment from Exonerate_protein2genome TAACCTCACCGGAACCTCTGCCCCTGCC-TTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgaaggtaatgagactgcctaccctgtgctctgtgtgtcttgctcagTAACCTCACGGGAACCTCTGCCCCTACTCTTCTGGCAGAGAGCCCTAGGCTGTGAATACAAACTAGGACCTGGATTTGAGCCAAACGAAAGCTTCCCTGATGGGAGgtgagacaggacatcctttatctatcccttccttcacttgttggtttgtt Alignment from Exonerate_coding2genome TAACCTCACCGGAACCTCTGCCCCTGCC-TTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgaaggtaatgagactgcctaccctgtgctctgtgtgtcttgctcagTAACCTCACGGGAACCTCTGCCCCTACTCTTCTGGCAGAGAGCCCTAGGCTGTGAATACAAACTAGGACCTGGATTTGAGCCAAACGAAAGCTTCCCTGATGGGAGgtgagacaggacatcctttatctatcccttccttcacttgttggtttgtt Alignment from GeneWise TAACCTCACCGGAACCTCTGCCCCT-GCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgaaggtaatgagactgcctaccctgtgctctgtgtgtcttgctcagTAACCTCACGGGAACCTCTGCCCCTACTCTTCTGGCAGAGAGCCCTAGGCTGTGAATACAAACTAGGACCTGGATTTGAGCCAAACGAAAGCTTCCCTGATGGGAGgtgagacaggacatcctttatctatcccttccttcacttgttggtttgtt #### Naaladl1_ID1451_10 --> 0 - 1 Original Alignment GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGAC-ATCTCTGTTTTCt aaaatccaaagcattcttatacaccaattcctttccctttttaattatagGAATCTCTCAGCAAACTGCAAGAGCGCACAGTGGACTATATCAATGTCGACCATCTCTGTTTTTtgtaaagtaaggttggccagctgagctcagaacaactctaaggttttggcc Alignment from CESAR GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGAC-ATCTCTGTTTTCt aaaatccaaagcattcttatacaccaattcctttccctttttaattatagGAATCTCTCAGCAAACTGCAAGAGCGCACAGTGGACTATATCAATGTCGACCATCTCTGTTTTTtgtaaagtaaggttggccagctgagctcagaacaactctaaggttttggcc Alignment from Spaln_aa2Genome GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCT aaaatccaaagcattcttatacaccaattcctttccctttttaattatagGAATCTCTCAGCAAACTGCAAGAGCGCACAGTGGACTATATCAATGTCGACCAT------CTCTgttttttgtaaagtaaggttggccagctgagctcagaacaactctaaggttttggcc Alignment from Spaln_nt2Genome GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGAC-ATCTCTGTTTTCT aaaatccaaagcattcttatacaccaattcctttccctttttaattatagGAATCTCTCAGCAAACTGCAAGAGCGCACAGTGGACTATATCAATGTCGACCATCTCTGTTTTTTgtaaagtaaggttggccagctgagctcagaacaactctaaggttttggcc Alignment from Pairagon GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGA-CATCTCTGTTTTCT aaaatccaaagcattcttatacaccaattcctttccctttttaattatagGAATCTCTCAGCAAACTGCAAGAGCGCACAGTGGACTATATCAATGTCGACCATCTCTGTTTTTTgtaaagtaaggttggccagctgagctcagaacaactctaaggttttggcc Alignment from Exonerate_protein2genome GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGAC-ATCTCTGTTTTCT aaaatccaaagcattcttatacaccaattcctttccctttttaattatagGAATCTCTCAGCAAACTGCAAGAGCGCACAGTGGACTATATCAATGTCGACCATCTCTGTTTTTTgtaaagtaaggttggccagctgagctcagaacaactctaaggttttggcc Alignment from Exonerate_coding2genome aaaatccaaagcattcttatacaccaattcctttccctttttaattataggaatctctcagcaaactgcaagagcgcacagtggactatatcaatgtcgaccatctctgttttttgtaaagtaaggttggccagctgagctcagaacaactctaaggttttggcc Alignment from GeneWise GAGTTTCTCAGCAAGCTGCAGGAGCGCACGGTGGCCTACATCAATGTGGACATCTCTGTTTTCT aaaatccaaagcattcttatacaccaattcctttccctttttaattatagGAATCTCTCAGCAAACTGCAAGAGCGCACAGTGGACTATATCAATGTCGACCAT------CTCTgttttttgtaaagtaaggttggccagctgagctcagaacaactctaaggttttggcc #### Naaladl1_ID1456_15 --> 2 - 1 Original Alignment gtTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAG-AAACAGAACATCAGCCTGg ggC ggcataagggtgggacttggatgtggcttttctggcctttcactctctaggtTTTAGCAGCCAACAAGCTGTCGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGCAAGCAGAATGTTAGCCTGggtaagtcacggagtccccaggcaggagccttctttacactgttgcagggC Alignment from CESAR gtTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAG-AAACAGAACATCAGCCTGg ggC ggcataagggtgggacttggatgtggcttttctggcctttcactctctaggtTTTAGCAGCCAACAAGCTGTCGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGCAAGCAGAATGTTAGCCTGggtaagtcacggagtccccaggcaggcagctctcatgtcaccctccagggC Alignment from Spaln_aa2Genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAG-AAACAGAACATCAGCCTGG GGC ggcataagggtgggacttggatgtggcttttctggcctttcactctctagGTTTTAGCAGCCAACAAGCTGTCGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGcAAGCAGAATGTTAGCCTGGgtaagtcacggagtccccaggcaggagccttctttacactgttgcagGGC Alignment from Spaln_nt2Genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAA-CAGAACATCAGCCTGG GGC ggcataagggtgggacttggatgtggcttttctggcctttcactctctagGTTTTAGCAGCCAACAAGCTGTCGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGCAAGCAGAATGTTAGCCTGGgtaagtcacggagtccccaggcaggagccttctttacactgttgcagGGC Alignment from Pairagon GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAG-AAACAGAACATCAGCCTGG GGC ggcataagggtgggacttggatgtggcttttctggcctttcactctctagGTTTTAGCAGCCAACAAGCTGTCGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGCAAGCAGAATGTTAGCCTGGgtaagtcacggagtccccaggcaggagccttctttacactgttgcagGGC Alignment from Exonerate_protein2genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAG-AAACAGAACATCAGCCTGG GGC ggcataagggtgggacttggatgtggcttttctggcctttcactctctagGTTTTAGCAGCCAACAAGCTGTCGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGCAAGCAGAATGTTAGCCTGGgtaagtcacggagtccccaggcaggagccttctttacactgttgcagGGC Alignment from Exonerate_coding2genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAG-AAACAGAACATCAGCCTGG GGC ggcataagggtgggacttggatgtggcttttctggcctttcactctctagGTTTTAGCAGCCAACAAGCTGTCGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGCAAGCAGAATGTTAGCCTGGgtaagtcacggagtccccaggcaggagccttctttacactgttgcagGGC Alignment from GeneWise GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAAC- -----------------ATCAGCCTGGGGC ggcataagggtgggacttggatgtggcttttctggcctttcactctctagGTTTTAGCAGCCAACAAGCTGTCGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCTGCTCAAGAGGCCCTGGGCACCCAGTTAGAGCAAGCAGAATgttagcctgggtaagtcacggagtccccagGCAGGAGCCTTCTTTACACTGTTGCAGGGC #### Naaladl1_ID1458_17 --> 1 - 2 Original Alignment tCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATG-CTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACag atggtacctgagctgctggctgtcagtgttttctgctgttcctatattagtCCTCTGCAGGTCCAAATGGTTAATGACCAACTGATGCCTCTTAGAGTGTGCATTTTTGAACCCAAGAGCTTTCCCAGAAGAGAGGCACTACaggtaagtctatgctgaaaccctgaggaaagggggtgtagtggtaacccctc Alignment from CESAR tCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATG-CTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACag atggtacctgagctgctggctgtcagtgttttctgctgttcctatattagtCCTCTGCAGGTCCAAATGGTTAATGACCAACTGATGCCTCTTAGAGTGTGCATTTTTGAACCCAAGAGCTTTCCCAGAAGAGAGGCACTACaggtaagtctatgctgaaaccctgaggaaagggggtgtagtggtaacccctc Alignment from Spaln_aa2Genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATG-CTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG atggtacctgagctgctggctgtcagtgttttctgctgttcctatattagTCCTCTGCAGGTCCAAATGGTTAATGACCAACTGATGcCTCTTAGAGTGTGCATTTTTGAACCCAAGAGCTTTCCCAGAAGAGAGGCACTACAGgtaagtctatgctgaaaccctgaggaaagggggtgtagtggtaacccctc Alignment from Spaln_nt2Genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGC-TCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG atggtacctgagctgctggctgtcagtgttttctgctgttcctatattagTCCTCTGCAGGTCCAAATGGTTAATGACCAACTGATGCCTCTTAGAGTGTGCATTTTTGAACCCAAGAGCTTTCCCAGAAGAGAGGCACTACAGgtaagtctatgctgaaaccctgaggaaagggggtgtagtggtaacccctc Alignment from Pairagon TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATG-CTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG atggtacctgagctgctggctgtcagtgttttctgctgttcctatattagTCCTCTGCAGGTCCAAATGGTTAATGACCAACTGATGCCTCTTAGAGTGTGCATTTTTGAACCCAAGAGCTTTCCCAGAAGAGAGGCACTACAGgtaagtctatgctgaaaccctgaggaaagggggtgtagtggtaacccctc Alignment from Exonerate_protein2genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATG-CTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG atggtacctgagctgctggctgtcagtgttttctgctgttcctatattagTCCTCTGCAGGTCCAAATGGTTAATGACCAACTGATGCCTCTTAGAGTGTGCATTTTTGAACCCAAGAGCTTTCCCAGAAGAGAGGCACTACAGgtaagtctatgctgaaaccctgaggaaagggggtgtagtggtaacccctc Alignment from Exonerate_coding2genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATG-CTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG atggtacctgagctgctggctgtcagtgttttctgctgttcctatattagTCCTCTGCAGGTCCAAATGGTTAATGACCAACTGATGCCTCTTAGAGTGTGCATTTTTGAACCCAAGAGCTTTCCCAGAAGAGAGGCACTACAGgtaagtctatgctgaaaccctgaggaaagggggtgtagtggtaacccctc Alignment from GeneWise TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATG-CTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG atggtacctgagctgctggctgtcagtgttttctgctgttcctatattagTCCTCTGCAGGTCCAAATGGTTAATGACCAACTGATGCCTCTTAGAGTGTGCATTTTTGAACCCAAGAGCTTTCCCAGAAGAGAGGCACTACAGgtaagtctatgctgaaaccctgaggaaagggggtgtagtggtaacccctc #### Ndufs8_ID194_2 --> 2 - 1 Original Alignment gaCATCTTAATGGACAAAGCCTT-CATAGCAGCGCAGTGGCGGCAACGTACa tcctgggggttgaggaacaggtcttccatcaattcaactcttgaatataggaCATCTTAATGGACAAAGCCTGCCACAGCAGTGCAGTGGCATCAACATACagtaggaagccaacattcaaattaggcttatacgacccttggcacactgaa Alignment from CESAR gaCATCTTAATGGACAAAGCCTT-CATAGCAGCGCAGTGGCGGCAACGTACa tcctgggggttgaggaacaggtcttccatcaattcaactcttgaatataggaCATCTTAATGGACAAAGCCTGCCACAGCAGTGCAGTGGCATCAACATACagtaggaagccaacattcaaattaggcttatacgacccttggcacactgaa Alignment from Spaln_aa2Genome GACATCTTAATGGACAAAGCCTT-CATAGCAGCGCAGTGGCGGCAACGTACA tcctgggggttgaggaacaggtcttccatcaattcaactcttgaatatagGACATCTTAATGGACAAAGCCTGcCACAGCAGTGCAGTGGCATCAACATACAgtaggaagccaacattcaaattaggcttatacgacccttggcacactgaa Alignment from Spaln_nt2Genome GACATCTTAATGGACAAAGCCTTC-ATAGCAGCGCAGTGGCGGCAACGTACA tcctgggggttgaggaacaggtcttccatcaattcaactcttgaatatagGACATCTTAATGGACAAAGCCTGCCACAGCAGTGCAGTGGCATCAACATACAgtaggaagccaacattcaaattaggcttatacgacccttggcacactgaa Alignment from Pairagon GACATCTTAATGGACAAAGCCT-TCATAGCAGCGCAGTGGCGGCAACGTACA tcctgggggttgaggaacaggtcttccatcaattcaactcttgaatatagGACATCTTAATGGACAAAGCCTGCCACAGCAGTGCAGTGGCATCAACATACAgtaggaagccaacattcaaattaggcttatacgacccttggcacactgaa Alignment from Exonerate_protein2genome GACATCTTAATGGACAAAGCCTT-CATAGCAGCGCAGTGGCGGCAACGTACA tcctgggggttgaggaacaggtcttccatcaattcaactcttgaatatagGACATCTTAATGGACAAAGCCTGCCACAGCAGTGCAGTGGCATCAACATACAgtaggaagccaacattcaaattaggcttatacgacccttggcacactgaa Alignment from Exonerate_coding2genome tcctgggggttgaggaacaggtcttccatcaattcaactcttgaatataggacatcttaatggacaaagcctgccacagcagtgcagtggcatcaacatacagtaggaagccaacattcaaattaggcttatacgacccttggcacactgaa Alignment from GeneWise GACATCTTAATGGACAAAGC-CTTCATAGCAGCGCAGTGGCGGCAACGTACA tcctgggggttgaggaacaggtcttccatcaattcaactcttgaatatagGACATCTTAATGGACAAAGCCTGCCACAGCAGTGCAGTGGCATCAACATACAgtaggaagccaacattcaaattaggcttatacgacccttggcacactgaa #### Ndufv1_ID273_9 --> 2 - 0 Original Alignment gcGTTGACTGGATGAACAAG-GTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctctgtgaagtgtttttcttcccccacagggGTTGACTGGATGAACACACGTGGTGGCCAGATTTGTGAAAGGCGATGCCTGTCCGGCTGAGATTGATTCTCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaagcaacatcttcctgtattcatccttcctgtattacaggaggggctg Alignment from CESAR gcGTTGACTGGATGAACAAG-GTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctctgtgaagtgtttttcttcccccacagggGTTGACTGGATGAACACACGTGGTGGCCAGATTTGTGAAAGGCGATGCCTGTCCGGCTGAGATTGATTCTCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaagcaacatcttcctgtattcatccttcctgtattacaggaggggctg Alignment from Spaln_aa2Genome GCGTTGACTGGATGAAC-AAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctctgtgaagtgtttttcttcccccacagGGGTTGACTGGATGAACaCACGTGGTGGCCAGATTTGTGAAAGGCGATGCCTGTCCGGCTGAGATTGATTCTCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaagcaacatcttcctgtattcatccttcctgtattacaggaggggctg Alignment from Spaln_nt2Genome GCGTTGACTGGATGAACA-AGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctctgtgaagtgtttttcttcccccacagGGGTTGACTGGATGAACACACGTGGTGGCCAGATTTGTGAAAGGCGATGCCTGTCCGGCTGAGATTGATTCTCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaagcaacatcttcctgtattcatccttcctgtattacaggaggggctg Alignment from Pairagon GCGTTGACTGGATGAACA-AGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctctgtgaagtgtttttcttcccccacagGGGTTGACTGGATGAACACACGTGGTGGCCAGATTTGTGAAAGGCGATGCCTGTCCGGCTGAGATTGATTCTCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaagcaacatcttcctgtattcatccttcctgtattacaggaggggctg Alignment from Exonerate_protein2genome GCGTTGACTGGATGAAC-AAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctctgtgaagtgtttttcttcccccacagGGGTTGACTGGATGAACACACGTGGTGGCCAGATTTGTGAAAGGCGATGCCTGTCCGGCTGAGATTGATTCTCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaagcaacatcttcctgtattcatccttcctgtattacaggaggggctg Alignment from Exonerate_coding2genome GCGTTGACTGGATGAAC-AAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctctgtgaagtgtttttcttcccccacagGGGTTGACTGGATGAACACACGTGGTGGCCAGATTTGTGAAAGGCGATGCCTGTCCGGCTGAGATTGATTCTCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaagcaacatcttcctgtattcatccttcctgtattacaggaggggctg Alignment from GeneWise GCGTTGACTGGATGAAC-AAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctctgtgaagtgtttttcttcccccacagGGGTTGACTGGATGAACACACGTGGTGGCCAGATTTGTGAAAGGCGATGCCTGTCCGGCTGAGATTGATTCTCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaagcaacatcttcctgtattcatccttcctgtattacaggaggggctg #### Ndufv1_ID274_8 --> 0 - 1 Original Alignment ACAGACATTGTGAAAGCCATCGCT-CGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGg tattctggggcgatggctaggatgtctgatgtcttgcctttgcctttcagACAGACATTGTGAAAGCCATTGCTCCATCTCATTGAGTTCTACAAGCATGAGAGCTGTGGGCAGTGTACCCCATGCCGAGAAggtgagttttctgtaaatattgatgtgttgttgtaatgttcacaagattct Alignment from CESAR ACAGACATTGTGAAAGCCATCGCT-CGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGg tattctggggcgatggctaggatgtctgatgtcttgcctttgcctttcagACAGACATTGTGAAAGCCATTGCTCCATCTCATTGAGTTCTACAAGCATGAGAGCTGTGGGCAGTGTACCCCATGCCGAGAAggtgagttttctgtaaatattgatgtgttgttgtaatgttcacaagattct Alignment from Spaln_aa2Genome ACAGACATTGTGAAAGCCATCGCT-CGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGG tattctggggcgatggctaggatgtctgatgtcttgcctttgcctttcagACAGACATTGTGAAAGCCATTGCTcCATCTCATTGAGTTCTACAAGCATGAGAGCTGTGGGCAGTGTACCCCATGCCGAGAAGgtgagttttctgtaaatattgatgtgttgttgtaatgttcacaagattct Alignment from Spaln_nt2Genome ACAGACATTGTGAAAGCCATCGCTCG-TCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGG tattctggggcgatggctaggatgtctgatgtcttgcctttgcctttcagACAGACATTGTGAAAGCCATTGCTCCATCTCATTGAGTTCTACAAGCATGAGAGCTGTGGGCAGTGTACCCCATGCCGAGAAGgtgagttttctgtaaatattgatgtgttgttgtaatgttcacaagattct Alignment from Pairagon ACAGACATTGTGAAAGCCATCGCT-CGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGG tattctggggcgatggctaggatgtctgatgtcttgcctttgcctttcagACAGACATTGTGAAAGCCATTGCTCCATCTCATTGAGTTCTACAAGCATGAGAGCTGTGGGCAGTGTACCCCATGCCGAGAAGgtgagttttctgtaaatattgatgtgttgttgtaatgttcacaagattct Alignment from Exonerate_protein2genome ACAGACATTGTGAAAGCCATCGCT-CGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGG tattctggggcgatggctaggatgtctgatgtcttgcctttgcctttcagACAGACATTGTGAAAGCCATTGCTCCATCTCATTGAGTTCTACAAGCATGAGAGCTGTGGGCAGTGTACCCCATGCCGAGAAGgtgagttttctgtaaatattgatgtgttgttgtaatgttcacaagattct Alignment from Exonerate_coding2genome ACAGACATTGTGAAAGCCATCGCT-CGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGG tattctggggcgatggctaggatgtctgatgtcttgcctttgcctttcagACAGACATTGTGAAAGCCATTGCTCCATCTCATTGAGTTCTACAAGCATGAGAGCTGTGGGCAGTGTACCCCATGCCGAGAAGgtgagttttctgtaaatattgatgtgttgttgtaatgttcacaagattct Alignment from GeneWise ACAGACATTGTGAAAGCCATCGCT-CGTCTCATTGAGTTCTACAAGCATGAGAGCTGTGGCCAGTGTACCCCGTGCCGTGAGG tattctggggcgatggctaggatgtctgatgtcttgcctttgcctttcagACAGACATTGTGAAAGCCATTGCTCCATCTCATTGAGTTCTACAAGCATGAGAGCTGTGGGCAGTGTACCCCATGCCGAGAAGgtgagttttctgtaaatattgatgtgttgttgtaatgttcacaagattct #### Ndufv1_ID275_7 --> 2 - 0 Original Alignment gtGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCC-AAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agagggggccctgtaaagagccctgacaatatttttcctacatatttaaggtGGTGTCACGGGTGGCTGGGATAATCTCCTTGCTGTGACCCCAGGTGGCTCATCT---ACATTGATTCCCCAAATCTGTGTGTGAGACTGTGCTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGCCTAGGAACAGCTACAGTTATTGTCATGGATCGCCTGgtaagtgaccttgaacccccttgcacttgtcacaggtaggagtgtttccc Alignment from CESAR gtGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATT-CCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agagggggccctgtaaagagccctgacaatatttttcctacatatttaaggtGGTGTCACGGGTGGCTGGGATAATCTCCTTGCTGTGACCCCAGGTGGCTCATCTACA---TTGATTCCCCAAATCTGTGTGTGAGACTGTGCTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGCCTAGGAACAGCTACAGTTATTGTCATGGATCGCCTGgtaagtgaccttgaacccccttgcacttgtcacaggtaggagtgtttccc Alignment from Spaln_aa2Genome GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agagggggccctgtaaagagccctgacaatatttttcctacatatttaagGTGGTGTCACGGGTGGCTGGGATAATCTCCTTGCTGTGACCCCAGGTGGCTCATCTACATTGATTC--CCCAAATCTGTGTGTGAGACTGTGCTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGCCTAGGAACAGCTACAGTTATTGTCATGGATCGCCTGgtaagtgaccttgaacccccttgcacttgtcacaggtaggagtgtttccc Alignment from Spaln_nt2Genome GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCC-AAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agagggggccctgtaaagagccctgacaatatttttcctacatatttaagGTGGTGTCACGGGTGGCTGGGATAATCTCCTTGCTGTGACCCCAGGTGGCTCATCTA---CATTGATTCCCCAAATCTGTGTGTGAGACTGTGCTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGCCTAGGAACAGCTACAGTTATTGTCATGGATCGCCTGgtaagtgaccttgaacccccttgcacttgtcacaggtaggagtgtttccc Alignment from Pairagon GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATT-CCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agagggggccctgtaaagagccctgacaatatttttcctacatatttaagGTGGTGTCACGGGTGGCTGGGATAATCTCCTTGCTGTGACCCCAGGTGGCTCATCTA---CATTGATTCCCCAAATCTGTGTGTGAGACTGTGCTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGCCTAGGAACAGCTACAGTTATTGTCATGGATCGCCTGgtaagtgaccttgaacccccttgcacttgtcacaggtaggagtgtttccc Alignment from Exonerate_protein2genome GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATT-CCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agagggggccctgtaaagagccctgacaatatttttcctacatatttaagGTGGTGTCACGGGTGGCTGGGATAATCTCCTTGCTGTGACCCCAGGTGGCTCATCTACA---TTGATTCCCCAAATCTGTGTGTGAGACTGTGCTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGCCTAGGAACAGCTACAGTTATTGTCATGGATCGCCTGgtaagtgaccttgaacccccttgcacttgtcacaggtaggagtgtttccc Alignment from Exonerate_coding2genome GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATT-CCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agagggggccctgtaaagagccctgacaatatttttcctacatatttaagGTGGTGTCACGGGTGGCTGGGATAATCTCCTTGCTGTGACCCCAGGTGGCTCATCTACA---TTGATTCCCCAAATCTGTGTGTGAGACTGTGCTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGCCTAGGAACAGCTACAGTTATTGTCATGGATCGCCTGgtaagtgaccttgaacccccttgcacttgtcacaggtaggagtgtttccc Alignment from GeneWise GTGGTGTCACAGGTGGCTGGGACAACCTCCTTGCTGTGATTCCTGGTGGCTCATCTACTCCACTGATTCCCAAATCTGTGTGTGAGACCGTGCTAATGGACTTCGATGCACTGGTGCAGGCTCAGACAGGCCTGGGCACGGCTGCAGTTATTGTTATGGATCGCTCG agagggggccctgtaaagagccctgacaatatttttcctacatatttaagGTGGTGTCACGGGTGGCTGGGATAATCTCCTTGCTGTGACCCCAGGTGGCTCATCTACATTGATTC--CCCAAATCTGTGTGTGAGACTGTGCTAATGGATTTTGATGCTCTAGTGCAGGCTCAGACAGGCCTAGGAACAGCTACAGTTATTGTCATGGATCGCCTGgtaagtgaccttgaacccccttgcacttgtcacaggtaggagtgtttccc #### Nfkb2_ID9826_4 --> 0 - 0 Original Alignment CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACC-TATCCTACTGTCAAG gggggttcgcttctcctccttattaccgcagtcagtggctgtgtttgcagCGAGGCTATCGATTCCGATATGGCTGTGAAGGCCCCTCCCATGGAGGCTTGCCAGGTGCATCTAGTGAGAAGGGCCGGAAGACCCTATCCTACTGTAAAGgtaagatcagatgacacaggtgaccatgttctgtagggtgcatggactga Alignment from CESAR CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACC-TATCCTACTGTCAAG gggggttcgcttctcctccttattaccgcagtcagtggctgtgtttgcagCGAGGCTATCGATTCCGATATGGCTGTGAAGGCCCCTCCCATGGAGGCTTGCCAGGTGCATCTAGTGAGAAGGGCCGGAAGACCCTATCCTACTGTAAAGgtaagatcagatgacacaggtgaccatgttctgtagggtgcatggaaggc Alignment from Spaln_aa2Genome CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACC-TATCCTACTGTCAAG gggggttcgcttctcctccttattaccgcagtcagtggctgtgtttgcagCGAGGCTATCGATTCCGATATGGCTGTGAAGGCCCCTCCCATGGAGGCTTGCCAGGTGCATCTAGTGAGAAGGGCCGGAAGACCcTATCCTACTGTAAAGgtaagatcagatgacacaggtgaccatgttctgtagggtgcatggactga Alignment from Spaln_nt2Genome CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACC-TATCCTACTGTCAAG gggggttcgcttctcctccttattaccgcagtcagtggctgtgtttgcagCGAGGCTATCGATTCCGATATGGCTGTGAAGGCCCCTCCCATGGAGGCTTGCCAGGTGCATCTAGTGAGAAGGGCCGGAAGACCCTATCCTACTGTAAAGgtaagatcagatgacacaggtgaccatgttctgtagggtgcatggactga Alignment from Pairagon CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGA-CCTATCCTACTGTCAAG gggggttcgcttctcctccttattaccgcagtcagtggctgtgtttgcagCGAGGCTATCGATTCCGATATGGCTGTGAAGGCCCCTCCCATGGAGGCTTGCCAGGTGCATCTAGTGAGAAGGGCCGGAAGACCCTATCCTACTGTAAAGgtaagatcagatgacacaggtgaccatgttctgtagggtgcatggactga Alignment from Exonerate_protein2genome CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACC-TATCCTACTGTCAAG gggggttcgcttctcctccttattaccgcagtcagtggctgtgtttgcagCGAGGCTATCGATTCCGATATGGCTGTGAAGGCCCCTCCCATGGAGGCTTGCCAGGTGCATCTAGTGAGAAGGGCCGGAAGACCCTATCCTACTGTAAAGgtaagatcagatgacacaggtgaccatgttctgtagggtgcatggactga Alignment from Exonerate_coding2genome CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACC-TATCCTACTGTCAAG gggggttcgcttctcctccttattaccgcagtcagtggctgtgtttgcagCGAGGCTATCGATTCCGATATGGCTGTGAAGGCCCCTCCCATGGAGGCTTGCCAGGTGCATCTAGTGAGAAGGGCCGGAAGACCCTATCCTACTGTAAAGgtaagatcagatgacacaggtgaccatgttctgtagggtgcatggactga Alignment from GeneWise CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAG-ACCTATCCTACTGTCAAG gggggttcgcttctcctccttattaccgcagtcagtggctgtgtttgcagCGAGGCTATCGATTCCGATATGGCTGTGAAGGCCCCTCCCATGGAGGCTTGCCAGGTGCATCTAGTGAGAAGGGCCGGAAGACCCTATCCTACTGTAAAGgtaagatcagatgacacaggtgaccatgttctgtagggtgcatggactga #### Nfkb2_ID9827_5 --> 0 - 2 Original Alignment ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTG-GGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTca ggtgaccatgttctgtagggtgcatggaaggccctttgattcccctgcagATCTGTAACTACGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTACGGGGTGTGTGCCATCTCTGTAGGACCCAAGGACATGACTGCTcagtatccgatgcttccctgtcctggagtggcatgattttctggatagcctc Alignment from CESAR ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTG-GGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTca ggtgaccatgttctgtagggtgcatggaaggccctttgattcccctgcagATCTGTAACTACGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTACGGGGTGTGTGCCATCTCTGTAGGACCCAAGGACATGACTGCTcagtatccgatgcttccctgtcctggagtggcatgattttctggatagcctc Alignment from Spaln_aa2Genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTG-GGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA ggtgaccatgttctgtagggtgcatggaaggccctttgattcccctgcagATCTGTAACTACGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTAcGGGGTGTGTGCCATCTCTGTAGGACCCAAGGACATGACTGCTCAgtatccgatgcttccctgtcctggagtggcatgattttctggatagcctc Alignment from Spaln_nt2Genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTG-GGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA ggtgaccatgttctgtagggtgcatggaaggccctttgattcccctgcagATCTGTAACTACGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTACGGGGTGTGTGCCATCTCTGTAGGACCCAAGGACATGACTGCTCAgtatccgatgcttccctgtcctggagtggcatgattttctggatagcctc Alignment from Pairagon ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTG-GGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA ggtgaccatgttctgtagggtgcatggaaggccctttgattcccctgcagATCTGTAACTACGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTACGGGGTGTGTGCCATCTCTGTAGGACCCAAGGACATGACTGCTCAgtatccgatgcttccctgtcctggagtggcatgattttctggatagcctc Alignment from Exonerate_protein2genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTG-GGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA ggtgaccatgttctgtagggtgcatggaaggccctttgattcccctgcagATCTGTAACTACGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTACGGGGTGTGTGCCATCTCTGTAGGACCCAAGGACATGACTGCTCAgtatccgatgcttccctgtcctggagtggcatgattttctggatagcctc Alignment from Exonerate_coding2genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAGTTG-GGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA ggtgaccatgttctgtagggtgcatggaaggccctttgattcccctgcagATCTGTAACTACGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTACGGGGTGTGTGCCATCTCTGTAGGACCCAAGGACATGACTGCTCAgtatccgatgcttccctgtcctggagtggcatgattttctggatagcctc Alignment from GeneWise ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAG-TTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA ggtgaccatgttctgtagggtgcatggaaggccctttgattcccctgcagATCTGTAACTACGAGGGACCAGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGGGCAAGCAGTGTTCAGAACTACGGGGTGTGTGCCATCTCTGTAGGACCCAAGGACATGACTGCTCAgtatccgatgcttccctgtcctggagtggcatgattttctggatagcctc #### Nfkb2_ID9828_6 --> 1 - 1 Original Alignment aTTTAATAATCTG-GGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAg gagacctcatgtcaagctgcatccagaataaatattgtattaaattttagaTTTAATAATTTGCGGT------CATGTAACCAAGAAGAACATGATGGAGATAATGATACAGAAACTTCAAAGGCAGCGTCTCCAATCCAAACCACAGGGCCTTGCTggtaagacgatcaaaggtgtcctgggaggtgctcctaaaaaggccaaaaag Alignment from CESAR aTTTAATAATCTG-GGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAg gagacctcatgtcaagctgcatccagaataaatattgtattaaattttagaTTTAATAATTTGCGGT------CATGTAACCAAGAAGAACATGATGGAGATAATGATACAGAAACTTCAAAGGCAGCGTCTCCAATCCAAACCACAGGGCCTTGCTggtaagacgatcaaaggtgtcctgggaggtgctcctaaaaaggccaaaaag Alignment from Spaln_aa2Genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG gagacctcatgtcaagctgcatccagaataaatattgtattaaattttagATTTAATAATTTGCGGT-----CATGTAACCAAGAAGAACATGATGGAGATAATGATACAGAAACTTCAAAGGCAGCGTCTCCAATCCAAACCACAGGGCCTTGCTGgtaagacgatcaaaggtgtcctgggaggtgctcctaaaaaggccaaaaag Alignment from Spaln_nt2Genome ATTTAATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG gagacctcatgtcaagctgcatccagaataaatattgtattaaattttagATTTAATAATTTGCG-GT----CATGTAACCAAGAAGAACATGATGGAGATAATGATACAGAAACTTCAAAGGCAGCGTCTCCAATCCAAACCACAGGGCCTTGCTGgtaagacgatcaaaggtgtcctgggaggtgctcctaaaaaggccaaaaag Alignment from Pairagon ATTTAATAATCTG-GGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG gagacctcatgtcaagctgcatccagaataaatattgtattaaattttagATTTAATAATTTGCGGT------CATGTAACCAAGAAGAACATGATGGAGATAATGATACAGAAACTTCAAAGGCAGCGTCTCCAATCCAAACCACAGGGCCTTGCTGgtaagacgatcaaaggtgtcctgggaggtgctcctaaaaaggccaaaaag Alignment from Exonerate_protein2genome ATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG gagacctcatgtcaagctgcatccagaataaatattgtattaaattttagATTTAATAATTTGCGGTCATGTAACCAAGAAGAACATGATGGAGATAATGATACAGAAACTTCAAAGGCAGCGTCTCCAATCCAAACCACAGGGCCTTGCTGgtaagacgatcaaaggtgtcctgggaggtgctcctaaaaaggccaaaaag Alignment from Exonerate_coding2genome ATAATCTGGGTGTCCTGCATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG gagacctcatgtcaagctgcatccagaataaatattgtattaaattttagATTTAATAATTTGCGGTCATGTAACCAAGAAGAACATGATGGAGATAATGATACAGAAACTTCAAAGGCAGCGTCTCCAATCCAAACCACAGGGCCTTGCTGgtaagacgatcaaaggtgtcctgggaggtgctcctaaaaaggccaaaaag Alignment from GeneWise TCCTG------------CATGTAACCAAGAAGAACATGATGGAGATTATGATCCAGAAACTTCAGAGGCAGCGTCTCCGCTCCAAGCCTCAGGGCCTTACAG gagacctcatgtcaagctgcatccagaataaatattgtattaaattttagATTTAATAATTTGCGGTCATGTAACCAAGAAGAACATGATGGAGATAATGATACAGAAACTTCAAAGGCAGCGTCTCCAATCCAAACCACAGGGCCTTGCTGgtaagacgatcaaaggtgtcctgggaggtgctcctaaaaaggccaaaaag #### Nfkb2_ID9829_7 --> 2 - 1 Original Alignment agGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTG-AGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCa aggccaaaaagaacagcttgacacttgcaatcgtgtgatatctatttcagagGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGCAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCGATCCATGACAGCagtaggaactctgcaggaggccaggtacacactgataagagttcagttgag Alignment from CESAR agGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTG-AGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCa aggccaaaaagaacagcttgacacttgcaatcgtgtgatatctatttcagagGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGCAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCGATCCATGACAGCagtaggaactctgcaggaggccaggtacacactgataagagttcagttgag Alignment from Spaln_aa2Genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTG-AGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA aggccaaaaagaacagcttgacacttgcaatcgtgtgatatctatttcagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGcAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCGATCCATGACAGCAgtaggaactctgcaggaggccaggtacacactgataagagttcagttgag Alignment from Spaln_nt2Genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTG-AGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA aggccaaaaagaacagcttgacacttgcaatcgtgtgatatctatttcagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGCAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCGATCCATGACAGCAgtaggaactctgcaggaggccaggtacacactgataagagttcagttgag Alignment from Pairagon AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTG-AGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA aggccaaaaagaacagcttgacacttgcaatcgtgtgatatctatttcagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGCAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCGATCCATGACAGCAgtaggaactctgcaggaggccaggtacacactgataagagttcagttgag Alignment from Exonerate_protein2genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTG-AGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA aggccaaaaagaacagcttgacacttgcaatcgtgtgatatctatttcagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGCAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCGATCCATGACAGCAgtaggaactctgcaggaggccaggtacacactgataagagttcagttgag Alignment from Exonerate_coding2genome AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTG-AGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA aggccaaaaagaacagcttgacacttgcaatcgtgtgatatctatttcagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGCAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCGATCCATGACAGCAgtaggaactctgcaggaggccaggtacacactgataagagttcagttgag Alignment from GeneWise AGGCTGAGCGGCGGGAGCTAGAGCAGGAGGCCAAGGAGCTGAAGAAAGTCATGGATCTG-AGCATTGTACGGCTGCGCTTCTCAGCTTTCCTTCGAGCTAGCGATGGCTCCTTCTCCTTGCCCCTGAAGCCTGTGATCTCCCAGCCCATCCATGACAGCA aggccaaaaagaacagcttgacacttgcaatcgtgtgatatctatttcagAGGCTGAGCGCCGAGAGCTTGAACAGGAGGCCAAGGAGCTGAAGAAAGTTATGGATCTGCAGCATTGTACGGCTGCGCTTCTCTGCTTTCCTTCGGGCCAGTGATGGTTCTTTCTCCTTGCCCCTGAAGCCTGTAATCTCCCAGCCGATCCATGACAGCAgtaggaactctgcaggaggccaggtacacactgataagagttcagttgag #### Nfkb2_ID9831_9 --> 2 - 0 Original Alignment acGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGG-CAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG ggaaatcacttgccccctccatatggctttcctttcccctccacacccagatGACATTGAGGTTCAATTCTATGAGGATGATGAGAATGGGTGGCCAAGCTTTTGGGGACTTTTCTCCCACAGATGTTTATAAACAGgtcaggagcagcctgagccttattccttctctttagcgaaaatatgctgg Alignment from CESAR acGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGG-CAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG ggaaatcacttgccccctccatatggctttcctttcccctccacacccagatGACATTGAGGTTCAATTCTATGAGGATGATGAGAATGGGTGGCCAAGCTTTTGGGGACTTTTCTCCCACAGATGTTTATAAACAGgtcaggagcagcctgagccttattccttctctttagcgaaaatatgctgg Alignment from Spaln_aa2Genome ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGG-CAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG ggaaatcacttgccccctccatatggctttcctttcccctccacacccagATGACATTGAGGTTCAATTCTATGAGGATGATGAGAATGGGTGGcCAAGCTTTTGGGGACTTTTCTCCCACAGATGTTTATAAACAGgtcaggagcagcctgagccttattccttctctttagcgaaaatatgctgg Alignment from Spaln_nt2Genome ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGG-CAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG ggaaatcacttgccccctccatatggctttcctttcccctccacacccagATGACATTGAGGTTCAATTCTATGAGGATGATGAGAATGGGTGGCCAAGCTTTTGGGGACTTTTCTCCCACAGATGTTTATAAACAGgtcaggagcagcctgagccttattccttctctttagcgaaaatatgctgg Alignment from Pairagon ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGG-CAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG ggaaatcacttgccccctccatatggctttcctttcccctccacacccagATGACATTGAGGTTCAATTCTATGAGGATGATGAGAATGGGTGGCCAAGCTTTTGGGGACTTTTCTCCCACAGATGTTTATAAACAGgtcaggagcagcctgagccttattccttctctttagcgaaaatatgctgg Alignment from Exonerate_protein2genome ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGG-CAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG ggaaatcacttgccccctccatatggctttcctttcccctccacacccagATGACATTGAGGTTCAATTCTATGAGGATGATGAGAATGGGTGGCCAAGCTTTTGGGGACTTTTCTCCCACAGATGTTTATAAACAGgtcaggagcagcctgagccttattccttctctttagcgaaaatatgctgg Alignment from Exonerate_coding2genome ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGG-CAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG ggaaatcacttgccccctccatatggctttcctttcccctccacacccagATGACATTGAGGTTCAATTCTATGAGGATGATGAGAATGGGTGGCCAAGCTTTTGGGGACTTTTCTCCCACAGATGTTTATAAACAGgtcaggagcagcctgagccttattccttctctttagcgaaaatatgctgg Alignment from GeneWise ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGG-CAAGCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG ggaaatcacttgccccctccatatggctttcctttcccctccacacccagATGACATTGAGGTTCAATTCTATGAGGATGATGAGAATGGGTGGCCAAGCTTTTGGGGACTTTTCTCCCACAGATGTTTATAAACAGgtcaggagcagcctgagccttattccttctctttagcgaaaatatgctgg #### Nfkb2_ID9834_12 --> 2 - 1 Original Alignment gtGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCG-GGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAg tgccttccccatgccttttcggggttgctctgttgctcctggccctacaggtGGCAGCCTTGGCTTCTTATCCTCCCCATTGGCCTATAACCCCTACCAATCTGGTGCATCCCCAATGGGTTATTATCTGCGGTGGGGGGGGTGGAACACAGATGGCTGGCTCTAGACGGGACACCGATGCTGGTGAGGGTGCAGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACATTGCATCGAggtcagtgtcaggcttgagggttagcatgcaccaatggaggtgcaaggcag Alignment from CESAR gtGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCG-GGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAg tgccttccccatgccttttcggggttgctctgttgctcctggccctacaggtGGCAGCCTTGGCTTCTTATCCTCCCCATTGGCCTATAACCCCTACCAATCTGGTGCATCCCCAATGGGTTATTATCTGCGGTGGGGGGGGTGGAACACAGATGGCTGGCTCTAGACGGGACACCGATGCTGGTGAGGGTGCAGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACATTGCATCGAggtcagtgtcaggcttgagggttagcatgcaccaatggaggtgcaaggcag Alignment from Spaln_aa2Genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCG-GGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tgccttccccatgccttttcggggttgctctgttgctcctggccctacagGTGGCAGCCTTGGCTTCTTATCCTCCCCATTGGCCTATAACCCCTACCAATCTGGTGCATCCCCAATGGGTTATTATCTGcGGTGGGGGGGGTGGAACACAGATGGCTGGCTCTAGACGGGACACCGATGCTGGTGAGGGTGCAGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACATTGCATCGAGgtcagtgtcaggcttgagggttagcatgcaccaatggaggtgcaaggcag Alignment from Spaln_nt2Genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCG-GGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tgccttccccatgccttttcggggttgctctgttgctcctggccctacagGTGGCAGCCTTGGCTTCTTATCCTCCCCATTGGCCTATAACCCCTACCAATCTGGTGCATCCCCAATGGGTTATTATCTGCGGTGGGGGGGGTGGAACACAGATGGCTGGCTCTAGACGGGACACCGATGCTGGTGAGGGTGCAGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACATTGCATCGAGgtcagtgtcaggcttgagggttagcatgcaccaatggaggtgcaaggcag Alignment from Pairagon GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCG-GGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tgccttccccatgccttttcggggttgctctgttgctcctggccctacagGTGGCAGCCTTGGCTTCTTATCCTCCCCATTGGCCTATAACCCCTACCAATCTGGTGCATCCCCAATGGGTTATTATCTGCGGTGGGGGGGGTGGAACACAGATGGCTGGCTCTAGACGGGACACCGATGCTGGTGAGGGTGCAGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACATTGCATCGAGgtcagtgtcaggcttgagggttagcatgcaccaatggaggtgcaaggcag Alignment from Exonerate_protein2genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTAT-CCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tgccttccccatgccttttcggggttgctctgttgctcctggccctacagGTGGCAGCCTTGGCTTCTTATCCTCCCCATTGGCCTATAACCCCTACCAATCTGGTGCATCCCCAATGGGTTATTATCTGCGGTGGGGGGGGTGGAACACAGATGGCTGGCTCTAGACGGGACACCGATGCTGGTGAGGGTGCAGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACATTGCATCGAGgtcagtgtcaggcttgagggttagcatgcaccaatggaggtgcaaggcag Alignment from Exonerate_coding2genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTAT-CCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tgccttccccatgccttttcggggttgctctgttgctcctggccctacagGTGGCAGCCTTGGCTTCTTATCCTCCCCATTGGCCTATAACCCCTACCAATCTGGTGCATCCCCAATGGGTTATTATCTGCGGTGGGGGGGGTGGAACACAGATGGCTGGCTCTAGACGGGACACCGATGCTGGTGAGGGTGCAGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACATTGCATCGAGgtcagtgtcaggcttgagggttagcatgcaccaatggaggtgcaaggcag Alignment from GeneWise GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTAT-CCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGGACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tgccttccccatgccttttcggggttgctctgttgctcctggccctacagGTGGCAGCCTTGGCTTCTTATCCTCCCCATTGGCCTATAACCCCTACCAATCTGGTGCATCCCCAATGGGTTATTATCTGCGGTGGGGGGGGTGGAACACAGATGGCTGGCTCTAGACGGGACACCGATGCTGGTGAGGGTGCAGAGGAGCCCAGGACACCCCCAGAGGCTCCCCAGGGTGAACCACAGGCCCTTGACACATTGCATCGAGgtcagtgtcaggcttgagggttagcatgcaccaatggaggtgcaaggcag #### Nfkb2_ID9840_18 --> 2 - 0 Original Alignment gtGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCAT-ACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaaccttaactagtcttttcatgtgggatttgtgtttggcaggtGCTGATATCCACACAGAGAATGAAGAACCTCTGTGTCCACTGCCATCCCCCTCAACCTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGAGGGCATCACCCCTCTTGATCTCACTTGCAGTACCAAGgtaagtctacccttggagaagattggctgaggaacagggtctgctgcagt Alignment from CESAR gtGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCAT-ACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaaccttaactagtcttttcatgtgggatttgtgtttggcaggtGCTGATATCCACACAGAGAATGAAGAACCTCTGTGTCCACTGCCATCCCCCTCAACCTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGAGGGCATCACCCCTCTTGATCTCACTTGCAGTACCAAGgtaagtctacccttggagaagattggctgaggaacagggtctgctgcagt Alignment from Spaln_aa2Genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCAT-ACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaaccttaactagtcttttcatgtgggatttgtgtttggcagGTGCTGATATCCACACAGAGAATGAAGAACCTCTGTGTCCACTGCCATCCCCCTCAACCTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGAGGGCATcACCCCTCTTGATCTCACTTGCAGTACCAAGgtaagtctacccttggagaagattggctgaggaacagggtctgctgcagt Alignment from Spaln_nt2Genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCAT-ACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaaccttaactagtcttttcatgtgggatttgtgtttggcagGTGCTGATATCCACACAGAGAATGAAGAACCTCTGTGTCCACTGCCATCCCCCTCAACCTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGAGGGCATCACCCCTCTTGATCTCACTTGCAGTACCAAGgtaagtctacccttggagaagattggctgaggaacagggtctgctgcagt Alignment from Pairagon GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCAT-ACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaaccttaactagtcttttcatgtgggatttgtgtttggcagGTGCTGATATCCACACAGAGAATGAAGAACCTCTGTGTCCACTGCCATCCCCCTCAACCTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGAGGGCATCACCCCTCTTGATCTCACTTGCAGTACCAAGgtaagtctacccttggagaagattggctgaggaacagggtctgctgcagt Alignment from Exonerate_protein2genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCAT-ACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaaccttaactagtcttttcatgtgggatttgtgtttggcagGTGCTGATATCCACACAGAGAATGAAGAACCTCTGTGTCCACTGCCATCCCCCTCAACCTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGAGGGCATCACCCCTCTTGATCTCACTTGCAGTACCAAGgtaagtctacccttggagaagattggctgaggaacagggtctgctgcagt Alignment from Exonerate_coding2genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCAT-ACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaaccttaactagtcttttcatgtgggatttgtgtttggcagGTGCTGATATCCACACAGAGAATGAAGAACCTCTGTGTCCACTGCCATCCCCCTCAACCTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGAGGGCATCACCCCTCTTGATCTCACTTGCAGTACCAAGgtaagtctacccttggagaagattggctgaggaacagggtctgctgcagt Alignment from GeneWise GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCAT-ACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaaccttaactagtcttttcatgtgggatttgtgtttggcagGTGCTGATATCCACACAGAGAATGAAGAACCTCTGTGTCCACTGCCATCCCCCTCAACCTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGAGGGCATCACCCCTCTTGATCTCACTTGCAGTACCAAGgtaagtctacccttggagaagattggctgaggaacagggtctgctgcagt #### Nfkb2_ID9841_19 --> 0 - 1 Original Alignment GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTG-GCCCCACCCAGCCCTGCAg cagggaaagttaggtttaaggtctaatgcccctttgcattccattcttagGTGAAGACCCTGCTGCTAAATGCTGCTCAGAATACCACGGAGCCACCCCTGCGCCCCACCCACCCCGGTAggtaggtctgcagtggcctctggcacctcaatcaagaggtgatacccttag Alignment from CESAR GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTG-GCCCCACCCAGCCCTGCAg cagggaaagttaggtttaaggtctaatgcccctttgcattccattcttagGTGAAGACCCTGCTGCTAAATGCTGCTCAGAATACCACGGAGCCACCCCTGCGCCCCACCCACCCCGGTAggtaggtctgcagtggcctctggcacctcaatcaagaggtgatacccttag Alignment from Spaln_aa2Genome GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCT- cagggaaagttaggtttaaggtctaatgcccctttgcattccattcttagGTGAAGACCCTGCTGCTAAATGCTGCTCAGAATACCACGGAGCCACCCCTGCGCCCCACCCACCCCGgtaggtaggtctgcagtggcctctggcacctcaatcaagaggtgatacccttag Alignment from Spaln_nt2Genome GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTG-GCCCCACCCAGCCCTGCAG cagggaaagttaggtttaaggtctaatgcccctttgcattccattcttagGTGAAGACCCTGCTGCTAAATGCTGCTCAGAATACCACGGAGCCACCCCTGCGCCCCACCCACCCCGGTAGgtaggtctgcagtggcctctggcacctcaatcaagaggtgatacccttag Alignment from Pairagon GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTG-GCCCCACCCAGCCCTGCAG cagggaaagttaggtttaaggtctaatgcccctttgcattccattcttagGTGAAGACCCTGCTGCTAAATGCTGCTCAGAATACCACGGAGCCACCCCTGCGCCCCACCCACCCCGGTAGgtaggtctgcagtggcctctggcacctcaatcaagaggtgatacccttag Alignment from Exonerate_protein2genome GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTG-GCCCCACCCAGCCCTGCAG cagggaaagttaggtttaaggtctaatgcccctttgcattccattcttagGTGAAGACCCTGCTGCTAAATGCTGCTCAGAATACCACGGAGCCACCCCTGCGCCCCACCCACCCCGGTAGgtaggtctgcagtggcctctggcacctcaatcaagaggtgatacccttag Alignment from Exonerate_coding2genome GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTG-GCCCCACCCAGCCCTGCAG cagggaaagttaggtttaaggtctaatgcccctttgcattccattcttagGTGAAGACCCTGCTGCTAAATGCTGCTCAGAATACCACGGAGCCACCCCTGCGCCCCACCCACCCCGGTAGgtaggtctgcagtggcctctggcacctcaatcaagaggtgatacccttag Alignment from GeneWise GTGAAGACTCTGCTGCTAAATGCTGCTCAGAACACCACGGAGCCACCCCTGGCCCCACCCAGCCCTG cagggaaagttaggtttaaggtctaatgcccctttgcattccattcttagGTGAAGACCCTGCTGCTAAATGCTGCTCAGAATACCACGGAGCCACCCCTGCGCCCCACCCACCCCGgtaggtaggtctgcagtggcctctggcacctcaatcaagaggtgatacccttag #### Nfkb2_ID9842_20 --> 2 - 0 Original Alignment ggCCAGGGCTGTCCCTGGGGGATGCAGCC-CTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG gctcctgcacatatgtgaactagattactttgacgccgcgctgtccgcagggCCAGGGCTGTCCCTAGGGGATACAGCCCCTACAGAACTTGCAACAACTGTTAGATGGTCCTGAAGCGCAAGGTAGCTGGGCAGAGCTAGCAGAGCGACTGGGATTGAGAAGCCTGGTGGACACATACAGGAAAACTCCGTCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtaagccagctagacactatgccgaagcctcaatccccttccctcaatcg Alignment from CESAR ggCCAGGGCTGTCCCTGGGGGATGCAGCC-CTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG gctcctgcacatatgtgaactagattactttgacgccgcgctgtccgcagggCCAGGGCTGTCCCTAGGGGATACAGCCCCTACAGAACTTGCAACAACTGTTAGATGGTCCTGAAGCGCAAGGTAGCTGGGCAGAGCTAGCAGAGCGACTGGGATTGAGAAGCCTGGTGGACACATACAGGAAAACTCCGTCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtaagccagctagacactatgccgaagcctcaatcccctacaaatgtggc Alignment from Spaln_aa2Genome GGCCAGGGCTGTCCCTGGGGGATGCAGCC-CTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG gctcctgcacatatgtgaactagattactttgacgccgcgctgtccgcagGGCCAGGGCTGTCCCTAGGGGATACAGCCcCTACAGAACTTGCAACAACTGTTAGATGGTCCTGAAGCGCAAGGTAGCTGGGCAGAGCTAGCAGAGCGACTGGGATTGAGAAGCCTGGTGGACACATACAGGAAAACTCCGTCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtaagccagctagacactatgccgaagcctcaatccccttccctcaatcg Alignment from Spaln_nt2Genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCC-TGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG gctcctgcacatatgtgaactagattactttgacgccgcgctgtccgcagGGCCAGGGCTGTCCCTAGGGGATACAGCCCCTACAGAACTTGCAACAACTGTTAGATGGTCCTGAAGCGCAAGGTAGCTGGGCAGAGCTAGCAGAGCGACTGGGATTGAGAAGCCTGGTGGACACATACAGGAAAACTCCGTCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtaagccagctagacactatgccgaagcctcaatccccttccctcaatcg Alignment from Pairagon GGCCAGGGCTGTCCCTGGGGGATGCAG-CCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG gctcctgcacatatgtgaactagattactttgacgccgcgctgtccgcagGGCCAGGGCTGTCCCTAGGGGATACAGCCCCTACAGAACTTGCAACAACTGTTAGATGGTCCTGAAGCGCAAGGTAGCTGGGCAGAGCTAGCAGAGCGACTGGGATTGAGAAGCCTGGTGGACACATACAGGAAAACTCCGTCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtaagccagctagacactatgccgaagcctcaatccccttccctcaatcg Alignment from Exonerate_protein2genome GGCCAGGGCTGTCCCTGGGGGATGCAGCC-CTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG gctcctgcacatatgtgaactagattactttgacgccgcgctgtccgcagGGCCAGGGCTGTCCCTAGGGGATACAGCCCCTACAGAACTTGCAACAACTGTTAGATGGTCCTGAAGCGCAAGGTAGCTGGGCAGAGCTAGCAGAGCGACTGGGATTGAGAAGCCTGGTGGACACATACAGGAAAACTCCGTCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtaagccagctagacactatgccgaagcctcaatccccttccctcaatcg Alignment from Exonerate_coding2genome GGCCAGGGCTGTCCCTGGGGGATGCAGCC-CTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG gctcctgcacatatgtgaactagattactttgacgccgcgctgtccgcagGGCCAGGGCTGTCCCTAGGGGATACAGCCCCTACAGAACTTGCAACAACTGTTAGATGGTCCTGAAGCGCAAGGTAGCTGGGCAGAGCTAGCAGAGCGACTGGGATTGAGAAGCCTGGTGGACACATACAGGAAAACTCCGTCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtaagccagctagacactatgccgaagcctcaatccccttccctcaatcg Alignment from GeneWise GGCCAGGGCTGTCCCTGGGGGATGCA-GCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG gctcctgcacatatgtgaactagattactttgacgccgcgctgtccgcagGGCCAGGGCTGTCCCTAGGGGATACAGCCCCTACAGAACTTGCAACAACTGTTAGATGGTCCTGAAGCGCAAGGTAGCTGGGCAGAGCTAGCAGAGCGACTGGGATTGAGAAGCCTGGTGGACACATACAGGAAAACTCCGTCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtaagccagctagacactatgccgaagcctcaatccccttccctcaatcg #### Nmrk1_ID4439_5 --> 1 - 2 Original Alignment gCCTCTGGACACCATATGGAACAGAAGTTAC-TTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGag agaagatgggaagaacattgtcttgggcactgttattattttatctttaggCTTCTGGATACCATATGGAATAGAAGTTACCTGCCTAACTGTTCCATATGAACAATGTAAGAGGAGAAGGaggtgagtctggagattgtctgtgaattgtaagcagaatcatgagaacagta Alignment from CESAR gCCTCTGGACACCATATGGAACAGAAGTTACTTC-CTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGag agaagatgggaagaacattgtcttgggcactgttattattttatctttaggCTTCTGGATACCATATGGAATAGAAGTTACCTGCCTAACTGTTCCATATGAACAATGTAAGAGGAGAAGGaggtgagtctggagattgtctgtgaattgtaagcagaatcatgagaacagta Alignment from Spaln_aa2Genome GCCTCTGGACACCATATGGAACAGAAGTTACTTC-CTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGAG agaagatgggaagaacattgtcttgggcactgttattattttatctttagGCTTCTGGATACCATATGGAATAGAAGTTACCTGcCTAACTGTTCCATATGAACAATGTAAGAGGAGAAGGAGgtgagtctggagattgtctgtgaattgtaagcagaatcatgagaacagta Alignment from Spaln_nt2Genome GCCTCTGGACACCATATGGAACAGAAGTTACTT-CCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGAG agaagatgggaagaacattgtcttgggcactgttattattttatctttagGCTTCTGGATACCATATGGAATAGAAGTTACCTGCCTAACTGTTCCATATGAACAATGTAAGAGGAGAAGGAGgtgagtctggagattgtctgtgaattgtaagcagaatcatgagaacagta Alignment from Pairagon GCCTCTGGACACCATATGGAACAGAAGTTACTT-CCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGAG agaagatgggaagaacattgtcttgggcactgttattattttatctttagGCTTCTGGATACCATATGGAATAGAAGTTACCTGCCTAACTGTTCCATATGAACAATGTAAGAGGAGAAGGAGgtgagtctggagattgtctgtgaattgtaagcagaatcatgagaacagta Alignment from Exonerate_protein2genome GCCTCTGGACACCATATGGAACAGAAGTTACTTC-CTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGAG agaagatgggaagaacattgtcttgggcactgttattattttatctttagGCTTCTGGATACCATATGGAATAGAAGTTACCTGCCTAACTGTTCCATATGAACAATGTAAGAGGAGAAGGAGgtgagtctggagattgtctgtgaattgtaagcagaatcatgagaacagta Alignment from Exonerate_coding2genome GCCTCTGGACACCATATGGAACAGAAGTTACTTC-CTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGAG agaagatgggaagaacattgtcttgggcactgttattattttatctttagGCTTCTGGATACCATATGGAATAGAAGTTACCTGCCTAACTGTTCCATATGAACAATGTAAGAGGAGAAGGAGgtgagtctggagattgtctgtgaattgtaagcagaatcatgagaacagta Alignment from GeneWise GCCTCTGGACACCATATGGAACAGAAGTTAC-TTCCTGACCGTTCCATATGAAGAATGTAAGAGGAGAAGGAG agaagatgggaagaacattgtcttgggcactgttattattttatctttagGCTTCTGGATACCATATGGAATAGAAGTTACCTGCCTAACTGTTCCATATGAACAATGTAAGAGGAGAAGGAGgtgagtctggagattgtctgtgaattgtaagcagaatcatgagaacagta #### Noc3l_ID7659_16 --> 2 - 1 Original Alignment gtGATGTTTTAAATATTGAC-CCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAg ttggtctccctttcacttaactaaatttagggatttgcttccttccttaggaGATGTTTTGAATATTGACCCCCATGAAATTTTATACCCCTCTCTTCCAGACACTGTTTACGTTACATGCAggtatggcattgtggctgaaagcctttttgttcagagtagtagccaatgtg Alignment from CESAR gtGATGTTTTAAATATTGACCCG-ATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAg ttggtctccctttcacttaactaaatttagggatttgcttccttccttaggaGATGTTTTGAATATTGACCCCCATGAAATTTTATACCCCTCTCTTCCAGACACTGTTTACGTTACATGCAggtatggcattgtggctgaaagcctttttgttcagagtagtagccaatgtg Alignment from Spaln_aa2Genome GTGATGTTTTAAATATTGAC-CCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG ttggtctccctttcacttaactaaatttagggatttgcttccttccttagGAGATGTTTTGAATATTGACcCCCATGAAATTTTATACCCCTCTCTTCCAGACACTGTTTACGTTACATGCAGgtatggcattgtggctgaaagcctttttgttcagagtagtagccaatgtg Alignment from Spaln_nt2Genome GTGATGTTTTAAATATTGACCCG-ATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG ttggtctccctttcacttaactaaatttagggatttgcttccttccttagGAGATGTTTTGAATATTGACCCCCATGAAATTTTATACCCCTCTCTTCCAGACACTGTTTACGTTACATGCAGgtatggcattgtggctgaaagcctttttgttcagagtagtagccaatgtg Alignment from Pairagon GTGATGTTTTAAATATTGA-CCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG ttggtctccctttcacttaactaaatttagggatttgcttccttccttagGAGATGTTTTGAATATTGACCCCCATGAAATTTTATACCCCTCTCTTCCAGACACTGTTTACGTTACATGCAGgtatggcattgtggctgaaagcctttttgttcagagtagtagccaatgtg Alignment from Exonerate_protein2genome GTGATGTTTTAAATATTGAC-CCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG ttggtctccctttcacttaactaaatttagggatttgcttccttccttagGAGATGTTTTGAATATTGACCCCCATGAAATTTTATACCCCTCTCTTCCAGACACTGTTTACGTTACATGCAGgtatggcattgtggctgaaagcctttttgttcagagtagtagccaatgtg Alignment from Exonerate_coding2genome GTGATGTTTTAAATATTGAC-CCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG ttggtctccctttcacttaactaaatttagggatttgcttccttccttagGAGATGTTTTGAATATTGACCCCCATGAAATTTTATACCCCTCTCTTCCAGACACTGTTTACGTTACATGCAGgtatggcattgtggctgaaagcctttttgttcagagtagtagccaatgtg Alignment from GeneWise GTGATGTTTTAAATATTGACCCG-ATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG ttggtctccctttcacttaactaaatttagggatttgcttccttccttagGAGATGTTTTGAATATTGACCCCCATGAAATTTTATACCCCTCTCTTCCAGACACTGTTTACGTTACATGCAGgtatggcattgtggctgaaagcctttttgttcagagtagtagccaatgtg #### Noc3l_ID7660_15 --> 0 - 1 Original Alignment GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATT-CTTTCTGGACAAg ggaacagaaagcatgcatttttgttccttatctcactcttatttctatagGAACTTAGTTATCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCATATTCCTTTCTGGACCAggtgagttagtccatttggtctccctttcacttaactaaatttaagcctgg Alignment from CESAR GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATT-CTTTCTGGACAAg ggaacagaaagcatgcatttttgttccttatctcactcttatttctatagGAACTTAGTTATCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCATATTCCTTTCTGGACCAggtgagttagtccatttggtctccctttcacttaactaaatttagggattt Alignment from Spaln_aa2Genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATT-CTTTCTGGACAAG ggaacagaaagcatgcatttttgttccttatctcactcttatttctatagGAACTTAGTTATCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCATATTcCTTTCTGGACCAGgtgagttagtccatttggtctccctttcacttaactaaatttaagcctgg Alignment from Spaln_nt2Genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATTC-TTTCTGGACAAG ggaacagaaagcatgcatttttgttccttatctcactcttatttctatagGAACTTAGTTATCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCATATTCCTTTCTGGACCAGgtgagttagtccatttggtctccctttcacttaactaaatttaagcctgg Alignment from Pairagon GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATT-CTTTCTGGACAAG ggaacagaaagcatgcatttttgttccttatctcactcttatttctatagGAACTTAGTTATCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCATATTCCTTTCTGGACCAGgtgagttagtccatttggtctccctttcacttaactaaatttaagcctgg Alignment from Exonerate_protein2genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATT-CTTTCTGGACAAG ggaacagaaagcatgcatttttgttccttatctcactcttatttctatagGAACTTAGTTATCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCATATTCCTTTCTGGACCAGgtgagttagtccatttggtctccctttcacttaactaaatttaagcctgg Alignment from Exonerate_coding2genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATT-CTTTCTGGACAAG ggaacagaaagcatgcatttttgttccttatctcactcttatttctatagGAACTTAGTTATCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCATATTCCTTTCTGGACCAGgtgagttagtccatttggtctccctttcacttaactaaatttaagcctgg Alignment from GeneWise GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACTGCTTTTCATATT-CTTTCTGGACAAG ggaacagaaagcatgcatttttgttccttatctcactcttatttctatagGAACTTAGTTATCAAGAAAGTCTCCATTGTGTTCAAACTGCTTTTCATATTCCTTTCTGGACCAGgtgagttagtccatttggtctccctttcacttaactaaatttaagcctgg #### Npm3_ID9577_3 --> 0 - 0 Original Alignment CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGG-TTGTCTTGCCAGCCCATG tttcctcagccaatcatcacctaaggcattgtgtgaccttcctgctctagCTCTGCCTTACTGAGGCAGCCACAGATGAGTGTAATGTGATAGAAGTTGTGGCCCGGGATTATGATAATCAGGAAATTGCGGTTCCTGTTGCAAACCTCAGGCCTGTCTTGTCAGCCGATGgtaagtttgagccattcagtcctgttgagccctaacaggattaataactt Alignment from CESAR CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGG-TTGTCTTGCCAGCCCATG tttcctcagccaatcatcacctaaggcattgtgtgaccttcctgctctagCTCTGCCTTACTGAGGCAGCCACAGATGAGTGTAATGTGATAGAAGTTGTGGCCCGGGATTATGATAATCAGGAAATTGCGGTTCCTGTTGCAAACCTCAGGCCTGTCTTGTCAGCCGATGgtaagtttgagccattcagtcctgttgagccctaacaggattaataactt Alignment from Spaln_aa2Genome CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGG-TTGTCTTGCCAGCCCATG tttcctcagccaatcatcacctaaggcattgtgtgaccttcctgctctagCTCTGCCTTACTGAGGCAGCCACAGATGAGTGTAATGTGATAGAAGTTGTGGCCCGGGATTATGATAATCAGGAAATTGCGGTTCCTGTTGCAAACCTCAGGcCTGTCTTGTCAGCCGATGgtaagtttgagccattcagtcctgttgagccctaacaggattaataactt Alignment from Spaln_nt2Genome CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGT-TGTCTTGCCAGCCCATG tttcctcagccaatcatcacctaaggcattgtgtgaccttcctgctctagCTCTGCCTTACTGAGGCAGCCACAGATGAGTGTAATGTGATAGAAGTTGTGGCCCGGGATTATGATAATCAGGAAATTGCGGTTCCTGTTGCAAACCTCAGGCCTGTCTTGTCAGCCGATGgtaagtttgagccattcagtcctgttgagccctaacaggattaataactt Alignment from Pairagon CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGG-TTGTCTTGCCAGCCCATG tttcctcagccaatcatcacctaaggcattgtgtgaccttcctgctctagCTCTGCCTTACTGAGGCAGCCACAGATGAGTGTAATGTGATAGAAGTTGTGGCCCGGGATTATGATAATCAGGAAATTGCGGTTCCTGTTGCAAACCTCAGGCCTGTCTTGTCAGCCGATGgtaagtttgagccattcagtcctgttgagccctaacaggattaataactt Alignment from Exonerate_protein2genome CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGG-TTGTCTTGCCAGCCCATG tttcctcagccaatcatcacctaaggcattgtgtgaccttcctgctctagCTCTGCCTTACTGAGGCAGCCACAGATGAGTGTAATGTGATAGAAGTTGTGGCCCGGGATTATGATAATCAGGAAATTGCGGTTCCTGTTGCAAACCTCAGGCCTGTCTTGTCAGCCGATGgtaagtttgagccattcagtcctgttgagccctaacaggattaataactt Alignment from Exonerate_coding2genome CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGG-TTGTCTTGCCAGCCCATG tttcctcagccaatcatcacctaaggcattgtgtgaccttcctgctctagCTCTGCCTTACTGAGGCAGCCACAGATGAGTGTAATGTGATAGAAGTTGTGGCCCGGGATTATGATAATCAGGAAATTGCGGTTCCTGTTGCAAACCTCAGGCCTGTCTTGTCAGCCGATGgtaagtttgagccattcagtcctgttgagccctaacaggattaataactt Alignment from GeneWise CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGG-TTGTCTTGCCAGCCCATG tttcctcagccaatcatcacctaaggcattgtgtgaccttcctgctctagCTCTGCCTTACTGAGGCAGCCACAGATGAGTGTAATGTGATAGAAGTTGTGGCCCGGGATTATGATAATCAGGAAATTGCGGTTCCTGTTGCAAACCTCAGGCCTGTCTTGTCAGCCGATGgtaagtttgagccattcagtcctgttgagccctaacaggattaataactt #### Npm3_ID9578_2 --> 2 - 0 Original Alignment gtTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAG-CACGTGCTGGCGTTGAACATG actttccccttcacatgtgtacctaggcggtgcttaatcgtgcttttcagggTGTGAGCTCTCTGATCACACACGCTCCTTCACTTTCAAGGTTGAAGAGGAAGATGACACAGAGCCAGGTGCTGGCATTGAACATGgtaagtgttacagaaggagtttgagatcgggcacacccgtggtatctctc Alignment from CESAR gtTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAG-CACGTGCTGGCGTTGAACATG actttccccttcacatgtgtacctaggcggtgcttaatcgtgcttttcagggTGTGAGCTCTCTGATCACACACGCTCCTTCACTTTCAAGGTTGAAGAGGAAGATGACACAGAGCCAGGTGCTGGCATTGAACATGgtaagtgttacagaaggagtttgagatcgggcacacccgtggtatctctc Alignment from Spaln_aa2Genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAG-CACGTGCTGGCGTTGAACATG actttccccttcacatgtgtacctaggcggtgcttaatcgtgcttttcagGGTGTGAGCTCTCTGATCACACACGCTCCTTCACTTTCAAGGTTGAAGAGGAAGATGACACAGAGcCAGGTGCTGGCATTGAACATGgtaagtgttacagaaggagtttgagatcgggcacacccgtggtatctctc Alignment from Spaln_nt2Genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGC-ACGTGCTGGCGTTGAACATG actttccccttcacatgtgtacctaggcggtgcttaatcgtgcttttcagGGTGTGAGCTCTCTGATCACACACGCTCCTTCACTTTCAAGGTTGAAGAGGAAGATGACACAGAGCCAGGTGCTGGCATTGAACATGgtaagtgttacagaaggagtttgagatcgggcacacccgtggtatctctc Alignment from Pairagon GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAG-CACGTGCTGGCGTTGAACATG actttccccttcacatgtgtacctaggcggtgcttaatcgtgcttttcagGGTGTGAGCTCTCTGATCACACACGCTCCTTCACTTTCAAGGTTGAAGAGGAAGATGACACAGAGCCAGGTGCTGGCATTGAACATGgtaagtgttacagaaggagtttgagatcgggcacacccgtggtatctctc Alignment from Exonerate_protein2genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAG-CACGTGCTGGCGTTGAACATG actttccccttcacatgtgtacctaggcggtgcttaatcgtgcttttcagGGTGTGAGCTCTCTGATCACACACGCTCCTTCACTTTCAAGGTTGAAGAGGAAGATGACACAGAGCCAGGTGCTGGCATTGAACATGgtaagtgttacagaaggagtttgagatcgggcacacccgtggtatctctc Alignment from Exonerate_coding2genome GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAG-CACGTGCTGGCGTTGAACATG actttccccttcacatgtgtacctaggcggtgcttaatcgtgcttttcagGGTGTGAGCTCTCTGATCACACACGCTCCTTCACTTTCAAGGTTGAAGAGGAAGATGACACAGAGCCAGGTGCTGGCATTGAACATGgtaagtgttacagaaggagtttgagatcgggcacacccgtggtatctctc Alignment from GeneWise GTTGTGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAG-CACGTGCTGGCGTTGAACATG actttccccttcacatgtgtacctaggcggtgcttaatcgtgcttttcagGGTGTGAGCTCTCTGATCACACACGCTCCTTCACTTTCAAGGTTGAAGAGGAAGATGACACAGAGCCAGGTGCTGGCATTGAACATGgtaagtgttacagaaggagtttgagatcgggcacacccgtggtatctctc #### Nt5c2_ID10037_16 --> 1 - 0 Original Alignment gCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGT-TCCATCCAGAGACGGATTAAG gacttagggaggtgtgttctcctagaccgaaaaaataaaatgttttctaggCATTTGGACAGCAGTAGCAATGAACACCCAGACATTAGTCCCTATCCAGAGACAGATTAAGgtactcagatcgcatttggggagcaatatcaggagtaagttgtttcagta Alignment from CESAR gCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGTTCC-ATCCAGAGACGGATTAAG gacttagggaggtgtgttctcctagaccgaaaaaataaaatgttttctaggCATTTGGACAGCAGTAGCAATGAACACCCAGACATTAGTCCCTATCCAGAGACAGATTAAGgtactcagatcgcatttggggagcaatatcaggagtaagttgtttcagta Alignment from Spaln_aa2Genome GCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGT-TCCATCCAGAGACGGATTAAG gacttagggaggtgtgttctcctagaccgaaaaaataaaatgttttctagGCATTTGGACAGCAGTAGCAATGAACACCCAGACATTAGTcCCTATCCAGAGACAGATTAAGgtactcagatcgcatttggggagcaatatcaggagtaagttgtttcagta Alignment from Spaln_nt2Genome GCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGTTCC-ATCCAGAGACGGATTAAG gacttagggaggtgtgttctcctagaccgaaaaaataaaatgttttctagGCATTTGGACAGCAGTAGCAATGAACACCCAGACATTAGTCCCTATCCAGAGACAGATTAAGgtactcagatcgcatttggggagcaatatcaggagtaagttgtttcagta Alignment from Pairagon GCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGTTCC-ATCCAGAGACGGATTAAG gacttagggaggtgtgttctcctagaccgaaaaaataaaatgttttctagGCATTTGGACAGCAGTAGCAATGAACACCCAGACATTAGTCCCTATCCAGAGACAGATTAAGgtactcagatcgcatttggggagcaatatcaggagtaagttgtttcagta Alignment from Exonerate_protein2genome GCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGT-TCCATCCAGAGACGGATTAAG gacttagggaggtgtgttctcctagaccgaaaaaataaaatgttttctagGCATTTGGACAGCAGTAGCAATGAACACCCAGACATTAGTCCCTATCCAGAGACAGATTAAGgtactcagatcgcatttggggagcaatatcaggagtaagttgtttcagta Alignment from Exonerate_coding2genome GCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGT-TCCATCCAGAGACGGATTAAG gacttagggaggtgtgttctcctagaccgaaaaaataaaatgttttctagGCATTTGGACAGCAGTAGCAATGAACACCCAGACATTAGTCCCTATCCAGAGACAGATTAAGgtactcagatcgcatttggggagcaatatcaggagtaagttgtttcagta Alignment from GeneWise GCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGT-TCCATCCAGAGACGGATTAAG gacttagggaggtgtgttctcctagaccgaaaaaataaaatgttttctagGCATTTGGACAGCAGTAGCAATGAACACCCAGACATTAGTCCCTATCCAGAGACAGATTAAGgtactcagatcgcatttggggagcaatatcaggagtaagttgtttcagta #### Nt5c2_ID10040_13 --> 0 - 1 Original Alignment AAAACTGGAAAACTGAAAATTGGCACC-TACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGg tgaatatcagtctaatgagaaaactgaaatctctttttcttggtttttagAAAACTGGAAAACTGAAGATTGGCTCCCTACACAGGCCCCCTGCAGCAT---GTTGTCTATTCAGGGggtgagtgggctgcttggctgcttcctgttcttgtgattgactctgtatgg Alignment from CESAR AAAACTGGAAAACTGAAAATTGGCACC-TACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGg tgaatatcagtctaatgagaaaactgaaatctctttttcttggtttttagAAAACTGGAAAACTGAAGATTGGCTCCCTACACAGGCCCCCTGCAGCAT---GTTGTCTATTCAGGGggtgagtgggctgcttggctgcttcctgttcttgtgattgactctgtatgg Alignment from Spaln_aa2Genome AAAACTGGAAAACTGAAAATTGGCACC-TACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgaatatcagtctaatgagaaaactgaaatctctttttcttggtttttagAAAACTGGAAAACTGAAGATTGGCTCCcTACACAGGCCCCCTGCAGCAT---GTTGTCTATTCAGGGGgtgagtgggctgcttggctgcttcctgttcttgtgattgactctgtatgg Alignment from Spaln_nt2Genome AAAACTGGAAAACTGAAAATTGGCA-CCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgaatatcagtctaatgagaaaactgaaatctctttttcttggtttttagAAAACTGGAAAACTGAAGATTGGCTCCCTACACAGGCCCCCTGCAGCATG---TTGTCTATTCAGGGGgtgagtgggctgcttggctgcttcctgttcttgtgattgactctgtatgg Alignment from Pairagon AAAACTGGAAAACTGAAAATTGGC-ACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgaatatcagtctaatgagaaaactgaaatctctttttcttggtttttagAAAACTGGAAAACTGAAGATTGGCTCCCTACACAGGCCCCCTGCAGCATG---TTGTCTATTCAGGGGgtgagtgggctgcttggctgcttcctgttcttgtgattgactctgtatgg Alignment from Exonerate_protein2genome AAAACTGGAAAACTGAAAATTGGCACC-TACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgaatatcagtctaatgagaaaactgaaatctctttttcttggtttttagAAAACTGGAAAACTGAAGATTGGCTCCCTACACAGGCCCCCTGCAGCAT---GTTGTCTATTCAGGGGgtgagtgggctgcttggctgcttcctgttcttgtgattgactctgtatgg Alignment from Exonerate_coding2genome tgaatatcagtctaatgagaaaactgaaatctctttttcttggtttttagaaaactggaaaactgaagattggctccctacacaggccccctgcagcatgttgtctattcagggggtgagtgggctgcttggctgcttcctgttcttgtgattgactctgtatgg Alignment from GeneWise AAAACTGGAAAACTGAAAATTGGC-ACCTACACGGGCCCCCTGCAGCACGGCATTGTCTACTCAGGGG tgaatatcagtctaatgagaaaactgaaatctctttttcttggtttttagAAAACTGGAAAACTGAAGATTGGCTCCCTACACAGGCCCCCTGCAGCAT---GTTGTCTATTCAGGGGgtgagtgggctgcttggctgcttcctgttcttgtgattgactctgtatgg #### Nudt8_ID267_2 --> 1 - 0 Original Alignment tTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCAC-GTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctagctgtggtcccagtgttcgcatgggcattgcagtTTCCCAGGTGGTAAGTGTGATCCTGATGACCGAGATGTAGTAATACACACTGCCCTTCAGGAGACACAGGAGGAACTAGACCTAGAGGTACCCAAGGAGCATCGTCTGGGGGGTGCTGCAACCAGTGTATGACCGGgtgggatctttacactcccatagcacaaccctattgtccagataactgag Alignment from CESAR tTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCAC-GTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctagctgtggtcccagtgttcgcatgggcattgcagtTTCCCAGGTGGTAAGTGTGATCCTGATGACCGAGATGTAGTAATACACACTGCCCTTCAGGAGACACAGGAGGAACTAGACCTAGAGGTACCCAAGGAGCATCGTCTGGGGGGTGCTGCAACCAGTGTATGACCGGgtgggatctttacactcccatagcacaaccctattgtccagataactgag Alignment from Spaln_aa2Genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCAC-GTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctagctgtggtcccagtgttcgcatgggcattgcagTTTCCCAGGTGGTAAGTGTGATCCTGATGACCGAGATGTAGTAATACACACTGCCCTTCAGGAGACACAGGAGGAACTAGACCTAGAGGTACCCAAGGAGCATcGTCTGGGGGGTGCTGCAACCAGTGTATGACCGGgtgggatctttacactcccatagcacaaccctattgtccagataactgag Alignment from Spaln_nt2Genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAA---TACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCA-CGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctagctgtggtcccagtgttcgcatgggcattgcagTTTCCCAGGTGGTAAGTGTGATCCTGATGACCGAGATGTAGTAATACACACTGCCCTTCAGGAGACACAGGAGGAACTAGACCTAGAGGTACCCAAGGAGCATCGTCTGGGGGGTGCTGCAACCAGTGTATGACCGGgtgggatctttacactcccatagcacaaccctattgtccagataactgag Alignment from Pairagon TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCA-CGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctagctgtggtcccagtgttcgcatgggcattgcagTTTCCCAGGTGGTAAGTGTGATCCTGATGACCGAGATGTAGTAATACACACTGCCCTTCAGGAGACACAGGAGGAACTAGACCTAGAGGTACCCAAGGAGCATCGTCTGGGGGGTGCTGCAACCAGTGTATGACCGGgtgggatctttacactcccatagcacaaccctattgtccagataactgag Alignment from Exonerate_protein2genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCAC-GTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctagctgtggtcccagtgttcgcatgggcattgcagTTTCCCAGGTGGTAAGTGTGATCCTGATGACCGAGATGTAGTAATACACACTGCCCTTCAGGAGACACAGGAGGAACTAGACCTAGAGGTACCCAAGGAGCATCGTCTGGGGGGTGCTGCAACCAGTGTATGACCGGgtgggatctttacactcccatagcacaaccctattgtccagataactgag Alignment from Exonerate_coding2genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCAC-GTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctagctgtggtcccagtgttcgcatgggcattgcagTTTCCCAGGTGGTAAGTGTGATCCTGATGACCGAGATGTAGTAATACACACTGCCCTTCAGGAGACACAGGAGGAACTAGACCTAGAGGTACCCAAGGAGCATCGTCTGGGGGGTGCTGCAACCAGTGTATGACCGGgtgggatctttacactcccatagcacaaccctattgtccagataactgag Alignment from GeneWise TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCAC-GTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctagctgtggtcccagtgttcgcatgggcattgcagTTTCCCAGGTGGTAAGTGTGATCCTGATGACCGAGATGTAGTAATACACACTGCCCTTCAGGAGACACAGGAGGAACTAGACCTAGAGGTACCCAAGGAGCATCGTCTGGGGGGTGCTGCAACCAGTGTATGACCGGgtgggatctttacactcccatagcacaaccctattgtccagataactgag #### Nxf1_ID2344_4 --> 0 - 0 Original Alignment ATTCCTTATGGTAGAAAGTATGACAAAACG-TGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG tctgaaatacctgtctcagttatgtgttacaaaatgtctcttctccacagATACCCTATGGTAAAAAGCATGACAAAACTCTGGCTTCTGAGCATGATTCAGAGCAAATGTAGTGTCCCATTCAACCCCATTGAGgtaagtaaaatagagtcagatccgagagggtgtgtatggatgtggactac Alignment from CESAR ATTCCTTATGGTAGAAAGTATGACAAAACG-TGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG tctgaaatacctgtctcagttatgtgttacaaaatgtctcttctccacagATACCCTATGGTAAAAAGCATGACAAAACTCTGGCTTCTGAGCATGATTCAGAGCAAATGTAGTGTCCCATTCAACCCCATTGAGgtaagtaaaatagagtcagatccgagagggtgtgtatggatgtggactac Alignment from Spaln_aa2Genome ATTCCTTATGGTAGAAAGTATGACAAAACG-TGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG tctgaaatacctgtctcagttatgtgttacaaaatgtctcttctccacagATACCCTATGGTAAAAAGCATGACAAAACTcTGGCTTCTGAGCATGATTCAGAGCAAATGTAGTGTCCCATTCAACCCCATTGAGgtaagtaaaatagagtcagatccgagagggtgtgtatggatgtggactac Alignment from Spaln_nt2Genome ATTCCTTATGGTAGAAAGTATGACAAAACG-TGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG tctgaaatacctgtctcagttatgtgttacaaaatgtctcttctccacagATACCCTATGGTAAAAAGCATGACAAAACTCTGGCTTCTGAGCATGATTCAGAGCAAATGTAGTGTCCCATTCAACCCCATTGAGgtaagtaaaatagagtcagatccgagagggtgtgtatggatgtggactac Alignment from Pairagon ATTCCTTATGGTAGAAAGTATGACAAAAC-GTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG tctgaaatacctgtctcagttatgtgttacaaaatgtctcttctccacagATACCCTATGGTAAAAAGCATGACAAAACTCTGGCTTCTGAGCATGATTCAGAGCAAATGTAGTGTCCCATTCAACCCCATTGAGgtaagtaaaatagagtcagatccgagagggtgtgtatggatgtggactac Alignment from Exonerate_protein2genome ATTCCTTATGGTAGAAAGTATGACAAAACG-TGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG tctgaaatacctgtctcagttatgtgttacaaaatgtctcttctccacagATACCCTATGGTAAAAAGCATGACAAAACTCTGGCTTCTGAGCATGATTCAGAGCAAATGTAGTGTCCCATTCAACCCCATTGAGgtaagtaaaatagagtcagatccgagagggtgtgtatggatgtggactac Alignment from Exonerate_coding2genome ATTCCTTATGGTAGAAAGTATGACAAAACG-TGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG tctgaaatacctgtctcagttatgtgttacaaaatgtctcttctccacagATACCCTATGGTAAAAAGCATGACAAAACTCTGGCTTCTGAGCATGATTCAGAGCAAATGTAGTGTCCCATTCAACCCCATTGAGgtaagtaaaatagagtcagatccgagagggtgtgtatggatgtggactac Alignment from GeneWise ATTCCTTATGGTAGAAAGTATGACAAA-ACGTGGCTTCTGAGCATGATTCAGAGCAAATGCAGTGTCCCCTTCAATCCCATCGAG tctgaaatacctgtctcagttatgtgttacaaaatgtctcttctccacagATACCCTATGGTAAAAAGCATGACAAAACTCTGGCTTCTGAGCATGATTCAGAGCAAATGTAGTGTCCCATTCAACCCCATTGAGgtaagtaaaatagagtcagatccgagagggtgtgtatggatgtggactac #### Nxf1_ID2345_5 --> 0 - 0 Original Alignment TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGAT-GCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtatggatgtggactacaaattgaaggctatgttgtttcctttacagTTTCACTATGAAAATACACGTGCTCATTTCTTTGTGGAGGATCGCAACTACTGGTTCCACATTAAAAGGTGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtacgtagacaccattaaaatggactagttgttactactggtttttacat Alignment from CESAR TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGAT-GCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtatggatgtggactacaaattgaaggctatgttgtttcctttacagTTTCACTATGAAAATACACGTGCTCATTTCTTTGTGGAGGATCGCAACTACTGGTTCCACATTAAAAGGTGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtacgtagacaccattaaaatggactagttgttactactggtttttacat Alignment from Spaln_aa2Genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGAT-GCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtatggatgtggactacaaattgaaggctatgttgtttcctttacagTTTCACTATGAAAATACACGTGCTCATTTCTTTGTGGAGGATcGCAACTACTGGTTCCACATTAAAAGGTGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtacgtagacaccattaaaatggactagttgttactactggtttttacat Alignment from Spaln_nt2Genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGAT-GCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtatggatgtggactacaaattgaaggctatgttgtttcctttacagTTTCACTATGAAAATACACGTGCTCATTTCTTTGTGGAGGATCGCAACTACTGGTTCCACATTAAAAGGTGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtacgtagacaccattaaaatggactagttgttactactggtttttacat Alignment from Pairagon TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGAT-GCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtatggatgtggactacaaattgaaggctatgttgtttcctttacagTTTCACTATGAAAATACACGTGCTCATTTCTTTGTGGAGGATCGCAACTACTGGTTCCACATTAAAAGGTGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtacgtagacaccattaaaatggactagttgttactactggtttttacat Alignment from Exonerate_protein2genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGAT-GCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtatggatgtggactacaaattgaaggctatgttgtttcctttacagTTTCACTATGAAAATACACGTGCTCATTTCTTTGTGGAGGATCGCAACTACTGGTTCCACATTAAAAGGTGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtacgtagacaccattaaaatggactagttgttactactggtttttacat Alignment from Exonerate_coding2genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGAT-GCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtatggatgtggactacaaattgaaggctatgttgtttcctttacagTTTCACTATGAAAATACACGTGCTCATTTCTTTGTGGAGGATCGCAACTACTGGTTCCACATTAAAAGGTGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtacgtagacaccattaaaatggactagttgttactactggtttttacat Alignment from GeneWise TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGAT-GCCACTACTGCTTCTGCATTAAAGGGTGTCAACCATAAGATCCAGGATCGAGAAAACAGAAGG tgtgtatggatgtggactacaaattgaaggctatgttgtttcctttacagTTTCACTATGAAAATACACGTGCTCATTTCTTTGTGGAGGATCGCAACTACTGGTTCCACATTAAAAGGTGTAAACCATAAGATCCAGGATCGAGAGAACAGACGGgtacgtagacaccattaaaatggactagttgttactactggtttttacat #### Nxf1_ID2348_8 --> 2 - 0 Original Alignment atTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATG-GCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccatttctgagacattccatgcactatgggatgtttgcagatTTGGTGGCTCAGAACATTGTTGTTGTTCTAAACCGCAGGAGCTGCATGCGCAGCAACTGTCCGCACCATCAAAGAGAATATTCCTGAGgtaaaggttctctcttttatcgtctcaccattctaacttaattagctggt Alignment from CESAR atTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATG-GCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccatttctgagacattccatgcactatgggatgtttgcagatTTGGTGGCTCAGAACATTGTTGTTGTTCTAAACCGCAGGAGCTGCATGCGCAGCAACTGTCCGCACCATCAAAGAGAATATTCCTGAGgtaaaggttctctcttttatcgtctcaccattctaacttaattagctggt Alignment from Spaln_aa2Genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATG-GCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccatttctgagacattccatgcactatgggatgtttgcagATTTGGTGGCTCAGAACATTGTTGTTGTTCTAAACCGCAGGAGCTGCATGcGCAGCAACTGTCCGCACCATCAAAGAGAATATTCCTGAGgtaaaggttctctcttttatcgtctcaccattctaacttaattagctggt Alignment from Spaln_nt2Genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATG-GCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccatttctgagacattccatgcactatgggatgtttgcagATTTGGTGGCTCAGAACATTGTTGTTGTTCTAAACCGCAGGAGCTGCATGCGCAGCAACTGTCCGCACCATCAAAGAGAATATTCCTGAGgtaaaggttctctcttttatcgtctcaccattctaacttaattagctggt Alignment from Pairagon ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATG-GCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccatttctgagacattccatgcactatgggatgtttgcagATTTGGTGGCTCAGAACATTGTTGTTGTTCTAAACCGCAGGAGCTGCATGCGCAGCAACTGTCCGCACCATCAAAGAGAATATTCCTGAGgtaaaggttctctcttttatcgtctcaccattctaacttaattagctggt Alignment from Exonerate_protein2genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATG-GCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccatttctgagacattccatgcactatgggatgtttgcagATTTGGTGGCTCAGAACATTGTTGTTGTTCTAAACCGCAGGAGCTGCATGCGCAGCAACTGTCCGCACCATCAAAGAGAATATTCCTGAGgtaaaggttctctcttttatcgtctcaccattctaacttaattagctggt Alignment from Exonerate_coding2genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATG-GCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccatttctgagacattccatgcactatgggatgtttgcagATTTGGTGGCTCAGAACATTGTTGTTGTTCTAAACCGCAGGAGCTGCATGCGCAGCAACTGTCCGCACCATCAAAGAGAATATTCCTGAGgtaaaggttctctcttttatcgtctcaccattctaacttaattagctggt Alignment from GeneWise ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATG-GCAGCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG ggtatgggcaccatttctgagacattccatgcactatgggatgtttgcagATTTGGTGGCTCAGAACATTGTTGTTGTTCTAAACCGCAGGAGCTGCATGCGCAGCAACTGTCCGCACCATCAAAGAGAATATTCCTGAGgtaaaggttctctcttttatcgtctcaccattctaacttaattagctggt #### Nxf1_ID2349_9 --> 0 - 0 Original Alignment CTATTGTCTTTGAACTTG-AGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA tgtaaaatgaataggttaaaattagatatgctattttttttttctaacagCTATTGTCTTTGAATTTGCAGCAGCAACAGGCTATTCAAGCTGGATGACATGTCTAGCATTGTGCAGACAGCGCCAAACGTAAAGACCTTAAATCTTTCTGGAAATGAAgtatgactgacatttagggcgctctttttgtagtagtagttgactggcta Alignment from CESAR CTATTGTCTTTGAACTTG-AGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA tgtaaaatgaataggttaaaattagatatgctattttttttttctaacagCTATTGTCTTTGAATTTGCAGCAGCAACAGGCTATTCAAGCTGGATGACATGTCTAGCATTGTGCAGACAGCGCCAAACGTAAAGACCTTAAATCTTTCTGGAAATGAAgtatgactgacatttagggcgctctttttgtagtagtagttgactggcta Alignment from Spaln_aa2Genome CTATTGTCTTTGAACTTG-AGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA tgtaaaatgaataggttaaaattagatatgctattttttttttctaacagCTATTGTCTTTGAATTTGcAGCAGCAACAGGCTATTCAAGCTGGATGACATGTCTAGCATTGTGCAGACAGCGCCAAACGTAAAGACCTTAAATCTTTCTGGAAATGAAgtatgactgacatttagggcgctctttttgtagtagtagttgactggcta Alignment from Spaln_nt2Genome CTATTGTCTTTGAACTTG-AGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA tgtaaaatgaataggttaaaattagatatgctattttttttttctaacagCTATTGTCTTTGAATTTGCAGCAGCAACAGGCTATTCAAGCTGGATGACATGTCTAGCATTGTGCAGACAGCGCCAAACGTAAAGACCTTAAATCTTTCTGGAAATGAAgtatgactgacatttagggcgctctttttgtagtagtagttgactggcta Alignment from Pairagon CTATTGTCTTTGAACTTG-AGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA tgtaaaatgaataggttaaaattagatatgctattttttttttctaacagCTATTGTCTTTGAATTTGCAGCAGCAACAGGCTATTCAAGCTGGATGACATGTCTAGCATTGTGCAGACAGCGCCAAACGTAAAGACCTTAAATCTTTCTGGAAATGAAgtatgactgacatttagggcgctctttttgtagtagtagttgactggcta Alignment from Exonerate_protein2genome CTATTGTCTTTGAACTTG-AGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA tgtaaaatgaataggttaaaattagatatgctattttttttttctaacagCTATTGTCTTTGAATTTGCAGCAGCAACAGGCTATTCAAGCTGGATGACATGTCTAGCATTGTGCAGACAGCGCCAAACGTAAAGACCTTAAATCTTTCTGGAAATGAAgtatgactgacatttagggcgctctttttgtagtagtagttgactggcta Alignment from Exonerate_coding2genome CTATTGTCTTTGAACTTG-AGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA tgtaaaatgaataggttaaaattagatatgctattttttttttctaacagCTATTGTCTTTGAATTTGCAGCAGCAACAGGCTATTCAAGCTGGATGACATGTCTAGCATTGTGCAGACAGCGCCAAACGTAAAGACCTTAAATCTTTCTGGAAATGAAgtatgactgacatttagggcgctctttttgtagtagtagttgactggcta Alignment from GeneWise CTATTGTCTTTGAACTTG-AGCAGCAACAGGCTATACAAGCTGGATGATATGTCTAGCATTGTGCAGAAGGCGCCAAACCTAAAGACCCTAAATCTCTCCGGAAACGAA tgtaaaatgaataggttaaaattagatatgctattttttttttctaacagCTATTGTCTTTGAATTTGCAGCAGCAACAGGCTATTCAAGCTGGATGACATGTCTAGCATTGTGCAGACAGCGCCAAACGTAAAGACCTTAAATCTTTCTGGAAATGAAgtatgactgacatttagggcgctctttttgtagtagtagttgactggcta #### Nxf1_ID2350_10 --> 0 - 2 Original Alignment TTGAAGACTGAGCGGGAATTAGACAAG-ATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATCag ggttcttagtgagactgttttttcccctaatcgtgattatttctccgcagTTAAAGACTGAGCGGAAATTAGAAACACATAAAAGGGCTAAAGCTTGAAGAGCTATGGCTTGACAGAAACCCCATGTGTGAAAACTTCGGAGACCAGTCCAGCCATATCaggtaatgtcaagagttatctatcttcctgggggcactcacccatgggcagt Alignment from CESAR TTGAAGACTGAGCGGGAATTAGACAAG-ATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATCag ggttcttagtgagactgttttttcccctaatcgtgattatttctccgcagTTAAAGACTGAGCGGAAATTAGAAACACATAAAAGGGCTAAAGCTTGAAGAGCTATGGCTTGACAGAAACCCCATGTGTGAAAACTTCGGAGACCAGTCCAGCCATATCaggtaatgtcaagagttatctatcttcctgggggcactcacccatgggcagt Alignment from Spaln_aa2Genome TTGAAGACTGAGCGGGAATTAGAC-AAGATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATCAG ggttcttagtgagactgttttttcccctaatcgtgattatttctccgcagTTAAAGACTGAGCGGAAATTAGAAaCACATAAAAGGGCTAAAGCTTGAAGAGCTATGGCTTGACAGAAACCCCATGTGTGAAAACTTCGGAGACCAGTCCAGCCATATCAGgtaatgtcaagagttatctatcttcctgggggcactcacccatgggcagt Alignment from Spaln_nt2Genome TTGAAGACTGAGCGGGAATTAGACA-AGATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATCAG ggttcttagtgagactgttttttcccctaatcgtgattatttctccgcagTTAAAGACTGAGCGGAAATTAGAAACACATAAAAGGGCTAAAGCTTGAAGAGCTATGGCTTGACAGAAACCCCATGTGTGAAAACTTCGGAGACCAGTCCAGCCATATCAGgtaatgtcaagagttatctatcttcctgggggcactcacccatgggcagt Alignment from Pairagon TTGAAGACTGAGCGGGAATTAGACA-AGATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATCAG ggttcttagtgagactgttttttcccctaatcgtgattatttctccgcagTTAAAGACTGAGCGGAAATTAGAAACACATAAAAGGGCTAAAGCTTGAAGAGCTATGGCTTGACAGAAACCCCATGTGTGAAAACTTCGGAGACCAGTCCAGCCATATCAGgtaatgtcaagagttatctatcttcctgggggcactcacccatgggcagt Alignment from Exonerate_protein2genome TTGAAGACTGAGCGGGAATTAGAC-AAGATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATCAG ggttcttagtgagactgttttttcccctaatcgtgattatttctccgcagTTAAAGACTGAGCGGAAATTAGAAACACATAAAAGGGCTAAAGCTTGAAGAGCTATGGCTTGACAGAAACCCCATGTGTGAAAACTTCGGAGACCAGTCCAGCCATATCAGgtaatgtcaagagttatctatcttcctgggggcactcacccatgggcagt Alignment from Exonerate_coding2genome TTGAAGACTGAGCGGGAATTAGAC-AAGATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATCAG ggttcttagtgagactgttttttcccctaatcgtgattatttctccgcagTTAAAGACTGAGCGGAAATTAGAAACACATAAAAGGGCTAAAGCTTGAAGAGCTATGGCTTGACAGAAACCCCATGTGTGAAAACTTCGGAGACCAGTCCAGCCATATCAGgtaatgtcaagagttatctatcttcctgggggcactcacccatgggcagt Alignment from GeneWise TTGAAGACTGAGCGGGAATTAGAC-AAGATAAAAGGGCTGAAGCTGGAAGAGCTGTGGCTTGACAGAAACCCCATGTGTGACAACTTCGGAGACCAGTCCAGCTATATCAG ggttcttagtgagactgttttttcccctaatcgtgattatttctccgcagTTAAAGACTGAGCGGAAATTAGAAACACATAAAAGGGCTAAAGCTTGAAGAGCTATGGCTTGACAGAAACCCCATGTGTGAAAACTTCGGAGACCAGTCCAGCCATATCAGgtaatgtcaagagttatctatcttcctgggggcactcacccatgggcagt #### Nxf1_ID2353_13 --> 0 - 2 Original Alignment GGAAGCTATTTT-GGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGca gatagaagagaacactggtcctatgattaatatcctatttgattttctagGGAAGTTATTTTCGGAACCGAGAACCTAAAGAGTCTGGTCCTGCACTTCTTGCAGcagtaggtgccccaggcacaatagtcctcagggtaacaactggactatgcat Alignment from CESAR GGAAGCTATTTT-GGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGca gatagaagagaacactggtcctatgattaatatcctatttgattttctagGGAAGTTATTTTCGGAACCGAGAACCTAAAGAGTCTGGTCCTGCACTTCTTGCAGcagtaggtgccccaggcacaatagtcctcagggtaacaactggactatgcat Alignment from Spaln_aa2Genome GCTATTTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA gatagaagagaacactggtcctatgattaatatcctatttgattttctagggaagTTATTTTCGGAACCGAGAACCTAAAGAGTCTGGTCCTGCACTTCTTGCAGCAgtaggtgccccaggcacaatagtcctcagggtaacaactggactatgcat Alignment from Spaln_nt2Genome GGAAGCTATTTT-GGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA gatagaagagaacactggtcctatgattaatatcctatttgattttctagGGAAGTTATTTTCGGAACCGAGAACCTAAAGAGTCTGGTCCTGCACTTCTTGCAGCAgtaggtgccccaggcacaatagtcctcagggtaacaactggactatgcat Alignment from Pairagon GGAAGCTATTTT-GGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA gatagaagagaacactggtcctatgattaatatcctatttgattttctagGGAAGTTATTTTCGGAACCGAGAACCTAAAGAGTCTGGTCCTGCACTTCTTGCAGCAgtaggtgccccaggcacaatagtcctcagggtaacaactggactatgcat Alignment from Exonerate_protein2genome GGAAGCTAT-TTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA gatagaagagaacactggtcctatgattaatatcctatttgattttctagGGAAGTTATTTTCGGAACCGAGAACCTAAAGAGTCTGGTCCTGCACTTCTTGCAGCAgtaggtgccccaggcacaatagtcctcagggtaacaactggactatgcat Alignment from Exonerate_coding2genome GGAAGCTAT-TTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA gatagaagagaacactggtcctatgattaatatcctatttgattttctagGGAAGTTATTTTCGGAACCGAGAACCTAAAGAGTCTGGTCCTGCACTTCTTGCAGCAgtaggtgccccaggcacaatagtcctcagggtaacaactggactatgcat Alignment from GeneWise GCTATTTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA gatagaagagaacactggtcctatgattaatatcctatttgattttctagggaagTTATTTTCGGAACCGAGAACCTAAAGAGTCTGGTCCTGCACTTCTTGCAGCAgtaggtgccccaggcacaatagtcctcagggtaacaactggactatgcat #### Nxf1_ID2357_17 --> 0 - 1 Original Alignment AGCACATTACTGTGTTTTTCTGTCAAT-GGAGTCTTCAAGGAAg acacaagtaattctaagcctccctagcttatcaataattttttttaatagAGTACATTACTGTGTCTATCTCTAAATCGAAGTCCTCAAGGAAtgtaaggaatgttagttctgaacctctgccattatcttggcgtatctcctc Alignment from CESAR AGCACATTACTGTGTTTTTCTGTCAAT-GGAGTCTTCAAGGAAg acacaagtaattctaagcctccctagcttatcaataattttttttaatagAGTACATTACTGTGTCTATCTCTAAATCGAAGTCCTCAAGGAAtgtaaggaatgttagttctgaacctctgccattatcttggcgtatctcctc Alignment from Spaln_aa2Genome AGCACATTACTGTGTTTTTCTGTCAATGGA-GTCTTCAAGGAAG acacaagtaattctaagcctccctagcttatcaataattttttttaatagAGTACATTACTGTGTCTATCTCTAAATCGAaGTCCTCAAGGAATgtaaggaatgttagttctgaacctctgccattatcttggcgtatctcctc Alignment from Spaln_nt2Genome AGCACATTACTGTGTTTTTCTGTCAATGGA-GTCTTCAAGGAAG acacaagtaattctaagcctccctagcttatcaataattttttttaatagAGTACATTACTGTGTCTATCTCTAAATCGAAGTCCTCAAGGAATgtaaggaatgttagttctgaacctctgccattatcttggcgtatctcctc Alignment from Pairagon AGCACATTACTGTGTTTTTCTGTCAAT-GGAGTCTTCAAGGAAG acacaagtaattctaagcctccctagcttatcaataattttttttaatagAGTACATTACTGTGTCTATCTCTAAATCGAAGTCCTCAAGGAATgtaaggaatgttagttctgaacctctgccattatcttggcgtatctcctc Alignment from Exonerate_protein2genome acacaagtaattctaagcctccctagcttatcaataattttttttaatagagtacattactgtgtctatctctaaatcgaagtcctcaaggaatgtaaggaatgttagttctgaacctctgccattatcttggcgtatctcctc Alignment from Exonerate_coding2genome acacaagtaattctaagcctccctagcttatcaataattttttttaatagagtacattactgtgtctatctctaaatcgaagtcctcaaggaatgtaaggaatgttagttctgaacctctgccattatcttggcgtatctcctc Alignment from GeneWise acacaagtaattctaagcctccctagcttatcaataattttttttaatagagtacattactgtgtctatctctaaatcgaagtcctcaaggaatgtaaggaatgttagttctgaacctctgccattatcttggcgtatctcctc #### Nxf1_ID2358_18 --> 2 - 2 Original Alignment tgGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGA-ACGTTCATTGCTGTTCCTGCCAGCAATTCAgg ggactccccggctcctcgagccatttgatgttcttactgtttttctccagtgGATGGGAAGTCTCGAGACTCTTTACATGCTTTCACAAGGCACATTCATTGCTGTTCCTGCAAGCAATACTgggtaagaagttccgattaggttgagtcctatcatgggtgtgggtggaaagt Alignment from CESAR tgGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGA-ACGTTCATTGCTGTTCCTGCCAGCAATTCAgg ggactccccggctcctcgagccatttgatgttcttactgtttttctccagtgGATGGGAAGTCTCGAGACTCTTTACATGCTTTCACAAGGCACATTCATTGCTGTTCCTGCAAGCAATACTgggtaagaagttccgattaggttgagtcctatcatgggtgtgggtggaaagt Alignment from Spaln_aa2Genome TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGA-ACGTTCATTGCTGTTCCTGCCAGCAATTCAGG ggactccccggctcctcgagccatttgatgttcttactgtttttctccagTGGATGGGAAGTCTCGAGACTCTTTACATGCTTTCACAAGGcACATTCATTGCTGTTCCTGCAAGCAATACTGGgtaagaagttccgattaggttgagtcctatcatgggtgtgggtggaaagt Alignment from Spaln_nt2Genome TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGA-ACGTTCATTGCTGTTCCTGCCAGCAATTCAGG ggactccccggctcctcgagccatttgatgttcttactgtttttctccagTGGATGGGAAGTCTCGAGACTCTTTACATGCTTTCACAAGGCACATTCATTGCTGTTCCTGCAAGCAATACTGGgtaagaagttccgattaggttgagtcctatcatgggtgtgggtggaaagt Alignment from Pairagon TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGA-ACGTTCATTGCTGTTCCTGCCAGCAATTCAGG ggactccccggctcctcgagccatttgatgttcttactgtttttctccagTGGATGGGAAGTCTCGAGACTCTTTACATGCTTTCACAAGGCACATTCATTGCTGTTCCTGCAAGCAATACTGGgtaagaagttccgattaggttgagtcctatcatgggtgtgggtggaaagt Alignment from Exonerate_protein2genome CTTCAAGGAAGTGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGA-ACGTTCATTGCTGTTCCTGCCAGCAATTCAGG ggactccccggctcctcgagccatttgatgttcttactgTTTTTCTCCAGTGGATGGGAAGTCTCGAGACTCTTTACATGCTTTCACAAGGCACATTCATTGCTGTTCCTGCAAGCAATACTGGgtaagaagttccgattaggttgagtcctatcatgggtgtgggtggaaagt Alignment from Exonerate_coding2genome CTTCAAGGAAGTGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGA-ACGTTCATTGCTGTTCCTGCCAGCAATTCAGG ggactccccggctcctcgagccatttgatgttcttactgTTTTTCTCCAGTGGATGGGAAGTCTCGAGACTCTTTACATGCTTTCACAAGGCACATTCATTGCTGTTCCTGCAAGCAATACTGGgtaagaagttccgattaggttgagtcctatcatgggtgtgggtggaaagt Alignment from GeneWise TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACAAGA-ACGTTCATTGCTGTTCCTGCCAGCAATTCAGG ggactccccggctcctcgagccatttgatgttcttactgtttttctccagTGGATGGGAAGTCTCGAGACTCTTTACATGCTTTCACAAGGCACATTCATTGCTGTTCCTGCAAGCAATACTGGgtaagaagttccgattaggttgagtcctatcatgggtgtgggtggaaagt #### Osbp_ID3346_5 --> 2 - 2 Original Alignment atCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTT-TTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACaa ctgggagttgggatacaacagggaaacatcttcatttgtttttgctgcagatCAGTGCTGTTCTGGAAAAGGGGACATGAGTAAGGAAGATGATGAGAATGAGTTTCTTTGATGCACCAGAGATAATCACCATGCCTGAAAATTTAAGCCACaagtaggccctttggcggctacatgaacaaacacatatgtttacacaggaga Alignment from CESAR atCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTT-TTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACaa ctgggagttgggatacaacagggaaacatcttcatttgtttttgctgcagatCAGTGCTGTTCTGGAAAAGGGGACATGAGTAAGGAAGATGATGAGAATGAGTTTCTTTGATGCACCAGAGATAATCACCATGCCTGAAAATTTAAGCCACaagtaggccctttggcggctacatgaacaaacacatatgtttacacaggaga Alignment from Spaln_aa2Genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTT-TTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA ctgggagttgggatacaacagggaaacatcttcatttgtttttgctgcagATCAGTGCTGTTCTGGAAAAGGGGACATGAGTAAGGAAGATGATGAGAATGAGTTTcTTTGATGCACCAGAGATAATCACCATGCCTGAAAATTTAAGCCACAAgtaggccctttggcggctacatgaacaaacacatatgtttacacaggaga Alignment from Spaln_nt2Genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAG-TTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA ctgggagttgggatacaacagggaaacatcttcatttgtttttgctgcagATCAGTGCTGTTCTGGAAAAGGGGACATGAGTAAGGAAGATGATGAGAATGAGTTTCTTTGATGCACCAGAGATAATCACCATGCCTGAAAATTTAAGCCACAAgtaggccctttggcggctacatgaacaaacacatatgtttacacaggaga Alignment from Pairagon ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTT-TTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA ctgggagttgggatacaacagggaaacatcttcatttgtttttgctgcagATCAGTGCTGTTCTGGAAAAGGGGACATGAGTAAGGAAGATGATGAGAATGAGTTTCTTTGATGCACCAGAGATAATCACCATGCCTGAAAATTTAAGCCACAAgtaggccctttggcggctacatgaacaaacacatatgtttacacaggaga Alignment from Exonerate_protein2genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAG-TTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA ctgggagttgggatacaacagggaaacatcttcatttgtttttgctgcagATCAGTGCTGTTCTGGAAAAGGGGACATGAGTAAGGAAGATGATGAGAATGAGTTTCTTTGATGCACCAGAGATAATCACCATGCCTGAAAATTTAAGCCACAAgtaggccctttggcggctacatgaacaaacacatatgtttacacaggaga Alignment from Exonerate_coding2genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAG-TTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA ctgggagttgggatacaacagggaaacatcttcatttgtttttgctgcagATCAGTGCTGTTCTGGAAAAGGGGACATGAGTAAGGAAGATGATGAGAATGAGTTTCTTTGATGCACCAGAGATAATCACCATGCCTGAAAATTTAAGCCACAAgtaggccctttggcggctacatgaacaaacacatatgtttacacaggaga Alignment from GeneWise ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAAT-GAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA ctgggagttgggatacaacagggaaacatcttcatttgtttttgctgcagATCAGTGCTGTTCTGGAAAAGGGGACATGAGTAAGGAAGATGATGAGAATGAGTTTCTTTGATGCACCAGAGATAATCACCATGCCTGAAAATTTAAGCCACAAgtaggccctttggcggctacatgaacaaacacatatgtttacacaggaga #### Osbp_ID3347_6 --> 1 - 0 Original Alignment aCGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGAT-GTCAGCCTTGATGAACAG tgtagctcttttgtgtgtgtgaactctcatgacatagttaatatgtttagaCGTACTGGCAGCAATATCAGTGGGCCCAGCAGTGATCGTCAGCCTTGATGAACAGgtgagtcactctttgcaaattggcacatttgaatggactgggagtttgct Alignment from CESAR aCGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGAT-GTCAGCCTTGATGAACAG tgtagctcttttgtgtgtgtgaactctcatgacatagttaatatgtttagaCGTACTGGCAGCAATATCAGTGGGCCCAGCAGTGATCGTCAGCCTTGATGAACAGgtgagtcactctttgcaaattggcacatttgaatggactgggagtttgct Alignment from Spaln_aa2Genome ACGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGAT-GTCAGCCTTGATGAACAG tgtagctcttttgtgtgtgtgaactctcatgacatagttaatatgtttagACGTACTGGCAGCAATATCAGTGGGCCCAGCAGTGATcGTCAGCCTTGATGAACAGgtgagtcactctttgcaaattggcacatttgaatggactgggagtttgct Alignment from Spaln_nt2Genome ACGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGAT-GTCAGCCTTGATGAACAG tgtagctcttttgtgtgtgtgaactctcatgacatagttaatatgtttagACGTACTGGCAGCAATATCAGTGGGCCCAGCAGTGATCGTCAGCCTTGATGAACAGgtgagtcactctttgcaaattggcacatttgaatggactgggagtttgct Alignment from Pairagon ACGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGAT-GTCAGCCTTGATGAACAG tgtagctcttttgtgtgtgtgaactctcatgacatagttaatatgtttagACGTACTGGCAGCAATATCAGTGGGCCCAGCAGTGATCGTCAGCCTTGATGAACAGgtgagtcactctttgcaaattggcacatttgaatggactgggagtttgct Alignment from Exonerate_protein2genome ACGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGAT-GTCAGCCTTGATGAACAG tgtagctcttttgtgtgtgtgaactctcatgacatagttaatatgtttagACGTACTGGCAGCAATATCAGTGGGCCCAGCAGTGATCGTCAGCCTTGATGAACAGgtgagtcactctttgcaaattggcacatttgaatggactgggagtttgct Alignment from Exonerate_coding2genome ACGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGAT-GTCAGCCTTGATGAACAG tgtagctcttttgtgtgtgtgaactctcatgacatagttaatatgtttagACGTACTGGCAGCAATATCAGTGGGCCCAGCAGTGATCGTCAGCCTTGATGAACAGgtgagtcactctttgcaaattggcacatttgaatggactgggagtttgct Alignment from GeneWise ACGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGAT-GTCAGCCTTGATGAACAG tgtagctcttttgtgtgtgtgaactctcatgacatagttaatatgtttagACGTACTGGCAGCAATATCAGTGGGCCCAGCAGTGATCGTCAGCCTTGATGAACAGgtgagtcactctttgcaaattggcacatttgaatggactgggagtttgct #### Otub1_ID2060_6 --> 0 - 0 Original Alignment TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTT-AAGGAGTTCTGCCAGCAG tgccatttttgtcagatcacccttagtgctctctttttctccacaaatagTTCATGGACTTTATTGAGCAGGTGGAGAAACAGACCTCTGTCACTGACCTGCTGGCCTCCTTCAATGACCAGAGCACTTCAGACTACCTCGTGGTCTACCTGCAGCTGCTAACCTCAGGCTACCTACAGCGGAAAAGCAAGTTCTTTGAGCACTTCATTGAAGGCGGCCGGACTGTTCAAGGAATTTTGTCAAGAGgtaggtcctcctctatcatctgcactggggccccccttttctttctgggt Alignment from CESAR TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTT-AAGGAGTTCTGCCAGCAG tgccatttttgtcagatcacccttagtgctctctttttctccacaaatagTTCATGGACTTTATTGAGCAGGTGGAGAAACAGACCTCTGTCACTGACCTGCTGGCCTCCTTCAATGACCAGAGCACTTCAGACTACCTCGTGGTCTACCTGCAGCTGCTAACCTCAGGCTACCTACAGCGGAAAAGCAAGTTCTTTGAGCACTTCATTGAAGGCGGCCGGACTGTTCAAGGAATTTTGTCAAGAGgtaggtcctcctctatcatctgcactggggccccccttttctttctgggt Alignment from Spaln_aa2Genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTT-AAGGAGTTCTGCCAGCAG tgccatttttgtcagatcacccttagtgctctctttttctccacaaatagTTCATGGACTTTATTGAGCAGGTGGAGAAACAGACCTCTGTCACTGACCTGCTGGCCTCCTTCAATGACCAGAGCACTTCAGACTACCTCGTGGTCTACCTGCAGCTGCTAACCTCAGGCTACCTACAGCGGAAAAGCAAGTTCTTTGAGCACTTCATTGAAGGCGGCCGGACTGTTcAAGGAATTTTGTCAAGAGgtaggtcctcctctatcatctgcactggggccccccttttctttctgggt Alignment from Spaln_nt2Genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTT-AAGGAGTTCTGCCAGCAG tgccatttttgtcagatcacccttagtgctctctttttctccacaaatagTTCATGGACTTTATTGAGCAGGTGGAGAAACAGACCTCTGTCACTGACCTGCTGGCCTCCTTCAATGACCAGAGCACTTCAGACTACCTCGTGGTCTACCTGCAGCTGCTAACCTCAGGCTACCTACAGCGGAAAAGCAAGTTCTTTGAGCACTTCATTGAAGGCGGCCGGACTGTTCAAGGAATTTTGTCAAGAGgtaggtcctcctctatcatctgcactggggccccccttttctttctgggt Alignment from Pairagon TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTT-AAGGAGTTCTGCCAGCAG tgccatttttgtcagatcacccttagtgctctctttttctccacaaatagTTCATGGACTTTATTGAGCAGGTGGAGAAACAGACCTCTGTCACTGACCTGCTGGCCTCCTTCAATGACCAGAGCACTTCAGACTACCTCGTGGTCTACCTGCAGCTGCTAACCTCAGGCTACCTACAGCGGAAAAGCAAGTTCTTTGAGCACTTCATTGAAGGCGGCCGGACTGTTCAAGGAATTTTGTCAAGAGgtaggtcctcctctatcatctgcactggggccccccttttctttctgggt Alignment from Exonerate_protein2genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTT-AAGGAGTTCTGCCAGCAG tgccatttttgtcagatcacccttagtgctctctttttctccacaaatagTTCATGGACTTTATTGAGCAGGTGGAGAAACAGACCTCTGTCACTGACCTGCTGGCCTCCTTCAATGACCAGAGCACTTCAGACTACCTCGTGGTCTACCTGCAGCTGCTAACCTCAGGCTACCTACAGCGGAAAAGCAAGTTCTTTGAGCACTTCATTGAAGGCGGCCGGACTGTTCAAGGAATTTTGTCAAGAGgtaggtcctcctctatcatctgcactggggccccccttttctttctgggt Alignment from Exonerate_coding2genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACTGTT-AAGGAGTTCTGCCAGCAG tgccatttttgtcagatcacccttagtgctctctttttctccacaaatagTTCATGGACTTTATTGAGCAGGTGGAGAAACAGACCTCTGTCACTGACCTGCTGGCCTCCTTCAATGACCAGAGCACTTCAGACTACCTCGTGGTCTACCTGCAGCTGCTAACCTCAGGCTACCTACAGCGGAAAAGCAAGTTCTTTGAGCACTTCATTGAAGGCGGCCGGACTGTTCAAGGAATTTTGTCAAGAGgtaggtcctcctctatcatctgcactggggccccccttttctttctgggt Alignment from GeneWise TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTCATCGAGGGTGGCCGGACT-GTTAAGGAGTTCTGCCAGCAG tgccatttttgtcagatcacccttagtgctctctttttctccacaaatagTTCATGGACTTTATTGAGCAGGTGGAGAAACAGACCTCTGTCACTGACCTGCTGGCCTCCTTCAATGACCAGAGCACTTCAGACTACCTCGTGGTCTACCTGCAGCTGCTAACCTCAGGCTACCTACAGCGGAAAAGCAAGTTCTTTGAGCACTTCATTGAAGGCGGCCGGACTGTTCAAGGAATTTTGTCAAGAGgtaggtcctcctctatcatctgcactggggccccccttttctttctgggt #### Otub1_ID2061_5 --> 1 - 0 Original Alignment gTTCAAAGCCGTGTCTGCCAAGAGTAAAGAG-GACCTGGTATCCCAGGGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG cctggtgtccaatgagctcactttggcacccttaaactgtttgtttgaaggTTTAAAGCAGTGTCAGCCAAGAGTAAAGAACGACCTGGTGTCCCAGGGCATCACTGAGTTCACAATTGAAGACTTCCACAACACAgtgagtaagctcacccatacttaactagattggtactgttgccatttttg Alignment from CESAR gTTCAAAGCCGTGTCTGCCAAGAGTAAAGAG-GACCTGGTATCCCAGGGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG cctggtgtccaatgagctcactttggcacccttaaactgtttgtttgaaggTTTAAAGCAGTGTCAGCCAAGAGTAAAGAACGACCTGGTGTCCCAGGGCATCACTGAGTTCACAATTGAAGACTTCCACAACACAgtgagtaagctcacccatacttaactagattggtactgttgccatttttg Alignment from Spaln_aa2Genome GTTCAAAGCCGTGTCTGCCAAGAGTAAAGAG-GACCTGGTATCCCAGGGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG cctggtgtccaatgagctcactttggcacccttaaactgtttgtttgaagGTTTAAAGCAGTGTCAGCCAAGAGTAAAGAAcGACCTGGTGTCCCAGGGCATCACTGAGTTCACAATTGAAGACTTCCACAACACAgtgagtaagctcacccatacttaactagattggtactgttgccatttttg Alignment from Spaln_nt2Genome GTTCAAAGCCGTGTCTGCCAAGAGT-AAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG cctggtgtccaatgagctcactttggcacccttaaactgtttgtttgaagGTTTAAAGCAGTGTCAGCCAAGAGTAAAGAACGACCTGGTGTCCCAGGGCATCACTGAGTTCACAATTGAAGACTTCCACAACACAgtgagtaagctcacccatacttaactagattggtactgttgccatttttg Alignment from Pairagon GTTCAAAGCCGTGTCTGCCAAGAGTAAAGAG-GACCTGGTATCCCAGGGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG cctggtgtccaatgagctcactttggcacccttaaactgtttgtttgaagGTTTAAAGCAGTGTCAGCCAAGAGTAAAGAACGACCTGGTGTCCCAGGGCATCACTGAGTTCACAATTGAAGACTTCCACAACACAgtgagtaagctcacccatacttaactagattggtactgttgccatttttg Alignment from Exonerate_protein2genome GTTCAAAGCCGTGTCTGCCAAGAGTAAAGAG-GACCTGGTATCCCAGGGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG cctggtgtccaatgagctcactttggcacccttaaactgtttgtttgaagGTTTAAAGCAGTGTCAGCCAAGAGTAAAGAACGACCTGGTGTCCCAGGGCATCACTGAGTTCACAATTGAAGACTTCCACAACACAgtgagtaagctcacccatacttaactagattggtactgttgccatttttg Alignment from Exonerate_coding2genome GTTCAAAGCCGTGTCTGCCAAGAGTAAAGAG-GACCTGGTATCCCAGGGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG cctggtgtccaatgagctcactttggcacccttaaactgtttgtttgaagGTTTAAAGCAGTGTCAGCCAAGAGTAAAGAACGACCTGGTGTCCCAGGGCATCACTGAGTTCACAATTGAAGACTTCCACAACACAgtgagtaagctcacccatacttaactagattggtactgttgccatttttg Alignment from GeneWise GTTCAAAGCCGTGTCTGCCAAGAGTAAA-GAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG cctggtgtccaatgagctcactttggcacccttaaactgtttgtttgaagGTTTAAAGCAGTGTCAGCCAAGAGTAAAGAACGACCTGGTGTCCCAGGGCATCACTGAGTTCACAATTGAAGACTTCCACAACACAgtgagtaagctcacccatacttaactagattggtactgttgccatttttg #### Pacs1_ID876_18 --> 2 - 2 Original Alignment agCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTG-CCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGtt cggtgctctctgaggaacataatacttgaaaagctctgcctctcccccagagCCACTAGACGTGGTGGGTCGTGTGATGCTGTATATCAATGGAGCTATCACAACACACCAGCTTCCCCGTCGCTGAAGCCATGTTGACCTGCAGGCATAAGttgtaatactaatatcagtagctttctggaattaggtagaacagagggagtt Alignment from CESAR agCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCT-GTGGCTGAAGCCATGTTGACCTGCAGGCATAAGtt cggtgctctctgaggaacataatacttgaaaagctctgcctctcccccagagCCACTAGACGTGGTGGGTCGTGTGATGCTGTATATCAATGGAGCTATCACAACACACCAGCTTCCCCGTCGCTGAAGCCATGTTGACCTGCAGGCATAAGttgtaatactaatatcagtagctttctggaattaggtagaacagagggagtt Alignment from Spaln_aa2Genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCT-GTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT cggtgctctctgaggaacataatacttgaaaagctctgcctctcccccagAGCCACTAGACGTGGTGGGTCGTGTGATGCTGTATATCAATGGAGCTATCACAACACACCAGCTTCCCcGTCGCTGAAGCCATGTTGACCTGCAGGCATAAGTTgtaatactaatatcagtagctttctggaattaggtagaacagagggagtt Alignment from Spaln_nt2Genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCT-GTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT cggtgctctctgaggaacataatacttgaaaagctctgcctctcccccagAGCCACTAGACGTGGTGGGTCGTGTGATGCTGTATATCAATGGAGCTATCACAACACACCAGCTTCCCCGTCGCTGAAGCCATGTTGACCTGCAGGCATAAGTTgtaatactaatatcagtagctttctggaattaggtagaacagagggagtt Alignment from Pairagon AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGC-TGCCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT cggtgctctctgaggaacataatacttgaaaagctctgcctctcccccagAGCCACTAGACGTGGTGGGTCGTGTGATGCTGTATATCAATGGAGCTATCACAACACACCAGCTTCCCCGTCGCTGAAGCCATGTTGACCTGCAGGCATAAGTTgtaatactaatatcagtagctttctggaattaggtagaacagagggagtt Alignment from Exonerate_protein2genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTG-CCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT cggtgctctctgaggaacataatacttgaaaagctctgcctctcccccagAGCCACTAGACGTGGTGGGTCGTGTGATGCTGTATATCAATGGAGCTATCACAACACACCAGCTTCCCCGTCGCTGAAGCCATGTTGACCTGCAGGCATAAGTTgtaatactaatatcagtagctttctggaattaggtagaacagagggagtt Alignment from Exonerate_coding2genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTG-CCTGTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT cggtgctctctgaggaacataatacttgaaaagctctgcctctcccccagAGCCACTAGACGTGGTGGGTCGTGTGATGCTGTATATCAATGGAGCTATCACAACACACCAGCTTCCCCGTCGCTGAAGCCATGTTGACCTGCAGGCATAAGTTgtaatactaatatcagtagctttctggaattaggtagaacagagggagtt Alignment from GeneWise AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCT-GTGGCTGAAGCCATGTTGACCTGCAGGCATAAGTT cggtgctctctgaggaacataatacttgaaaagctctgcctctcccccagAGCCACTAGACGTGGTGGGTCGTGTGATGCTGTATATCAATGGAGCTATCACAACACACCAGCTTCCCCGTCGCTGAAGCCATGTTGACCTGCAGGCATAAGTTgtaatactaatatcagtagctttctggaattaggtagaacagagggagtt #### Pacs1_ID877_17 --> 2 - 1 Original Alignment gtTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAG-CCTCCAGTGTCAg gtgtgcggtagcaaccaatacttcacttattcatgtaattttgctaacaggtTCTCACCCAGTAGCCAAGTACTTAGGTTCTGTAGATAGTAGATATAGCAGTACATTTCTGGATCCTGCATGGAGAGATCTATTCAGCCAGTCGGAGCCCCCTAGTGTCAggtaaggacccccagtaggaatcaccgaccagtggttctagcccccaacgc Alignment from CESAR gtTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCA-GTGTCAg gtgtgcggtagcaaccaatacttcacttattcatgtaattttgctaacaggtTCTCACCCAGTAGCCAAGTACTTAGGTTCTGTAGATAGTAGATATAGCAGTACATTTCTGGATCCTGCATGGAGAGATCTATTCAGCCAGTCGGAGCCCCCTAGTGTCAggtaaggacccccagtaggaatcaccgaccagtggttctagcccccaacgc Alignment from Spaln_aa2Genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCA- gtgtgcggtagcaaccaatacttcacttattcatgtaattttgctaacagGTTCTCACCCAGTAGCCAAGTACTTAGGTTCTGTAGATAGTAGATATAGCAGTACATTTCTGGATCCTGCATGGAGAGATCTATTCAGCCAGTCGGAGCCCCCTAgtgtcaggtaaggacccccagtaggaatcaccgaccagtggttctagcccccaacgc Alignment from Spaln_nt2Genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCC-AGTGTCAG gtgtgcggtagcaaccaatacttcacttattcatgtaattttgctaacagGTTCTCACCCAGTAGCCAAGTACTTAGGTTCTGTAGATAGTAGATATAGCAGTACATTTCTGGATCCTGCATGGAGAGATCTATTCAGCCAGTCGGAGCCCCCTAGTGTCAGgtaaggacccccagtaggaatcaccgaccagtggttctagcccccaacgc Alignment from Pairagon GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCC-AGTGTCAG gtgtgcggtagcaaccaatacttcacttattcatgtaattttgctaacagGTTCTCACCCAGTAGCCAAGTACTTAGGTTCTGTAGATAGTAGATATAGCAGTACATTTCTGGATCCTGCATGGAGAGATCTATTCAGCCAGTCGGAGCCCCCTAGTGTCAGgtaaggacccccagtaggaatcaccgaccagtggttctagcccccaacgc Alignment from Exonerate_protein2genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCA-GTGTCAG gtgtgcggtagcaaccaatacttcacttattcatgtaattttgctaacagGTTCTCACCCAGTAGCCAAGTACTTAGGTTCTGTAGATAGTAGATATAGCAGTACATTTCTGGATCCTGCATGGAGAGATCTATTCAGCCAGTCGGAGCCCCCTAGTGTCAGgtaaggacccccagtaggaatcaccgaccagtggttctagcccccaacgc Alignment from Exonerate_coding2genome GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCA-GTGTCAG gtgtgcggtagcaaccaatacttcacttattcatgtaattttgctaacagGTTCTCACCCAGTAGCCAAGTACTTAGGTTCTGTAGATAGTAGATATAGCAGTACATTTCTGGATCCTGCATGGAGAGATCTATTCAGCCAGTCGGAGCCCCCTAGTGTCAGgtaaggacccccagtaggaatcaccgaccagtggttctagcccccaacgc Alignment from GeneWise GTTCTCATCCAGTGGCCAAATACTTGGGCTCAGTAGATAGTAGATATAGCAGCACCTTTCTTGATTCTGCCTGGAGAGACCTATTCAGTCGCTCAGAGCCTCCAG gtgtgcggtagcaaccaatacttcacttattcatgtaattttgctaacagGTTCTCACCCAGTAGCCAAGTACTTAGGTTCTGTAGATAGTAGATATAGCAGTACATTTCTGGATCCTGCATGGAGAGATCTATTCAGCCAGTCGGAGCCCCCTAgtgtcaggtaaggacccccagtaggaatcaccgaccagtggttctagcccccaacgc #### Pacs1_ID885_9 --> 0 - 2 Original Alignment GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAA-CTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCaa ctaagtgttgctggcgaggacccatagattttaattcccctaatggctagGTGGGTTTTGGGTTAGAACACGTGTCCCGGGAGCAGATTCGAGAAGTGGAGGAGGACTTGGATGAACCTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACCCCGAAGCCCAAACTCaagtgagtccccaaagccctttccacccaagctccctattgcttctctttgt Alignment from CESAR GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAA-CTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCaa ctaagtgttgctggcgaggacccatagattttaattcccctaatggctagGTGGGTTTTGGGTTAGAACACGTGTCCCGGGAGCAGATTCGAGAAGTGGAGGAGGACTTGGATGAACCTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACCCCGAAGCCCAAACTCaagtgagtccccaaagccctttccacccaagctccctattgcttctctttgt Alignment from Spaln_aa2Genome GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAA-CTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ctaagtgttgctggcgaggacccatagattttaattcccctaatggctagGTGGGTTTTGGGTTAGAACACGTGTCCCGGGAGCAGATTCGAGAAGTGGAGGAGGACTTGGATGAAcCTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACCCCGAAGCCCAAACTCAAgtgagtccccaaagccctttccacccaagctccctattgcttctctttgt Alignment from Spaln_nt2Genome GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAA-CTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ctaagtgttgctggcgaggacccatagattttaattcccctaatggctagGTGGGTTTTGGGTTAGAACACGTGTCCCGGGAGCAGATTCGAGAAGTGGAGGAGGACTTGGATGAACCTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACCCCGAAGCCCAAACTCAAgtgagtccccaaagccctttccacccaagctccctattgcttctctttgt Alignment from Pairagon GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAA-CTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ctaagtgttgctggcgaggacccatagattttaattcccctaatggctagGTGGGTTTTGGGTTAGAACACGTGTCCCGGGAGCAGATTCGAGAAGTGGAGGAGGACTTGGATGAACCTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACCCCGAAGCCCAAACTCAAgtgagtccccaaagccctttccacccaagctccctattgcttctctttgt Alignment from Exonerate_protein2genome GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAA-CTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ctaagtgttgctggcgaggacccatagattttaattcccctaatggctagGTGGGTTTTGGGTTAGAACACGTGTCCCGGGAGCAGATTCGAGAAGTGGAGGAGGACTTGGATGAACCTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACCCCGAAGCCCAAACTCAAgtgagtccccaaagccctttccacccaagctccctattgcttctctttgt Alignment from Exonerate_coding2genome GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAA-CTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ctaagtgttgctggcgaggacccatagattttaattcccctaatggctagGTGGGTTTTGGGTTAGAACACGTGTCCCGGGAGCAGATTCGAGAAGTGGAGGAGGACTTGGATGAACCTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACCCCGAAGCCCAAACTCAAgtgagtccccaaagccctttccacccaagctccctattgcttctctttgt Alignment from GeneWise GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAA-CTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ctaagtgttgctggcgaggacccatagattttaattcccctaatggctagGTGGGTTTTGGGTTAGAACACGTGTCCCGGGAGCAGATTCGAGAAGTGGAGGAGGACTTGGATGAACCTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACCCCGAAGCCCAAACTCAAgtgagtccccaaagccctttccacccaagctccctattgcttctctttgt #### Pacs1_ID888_6 --> 2 - 0 Original Alignment atCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGAC-GACCCATTGCATGGGCAG caggtgttacaaaaccctcactgcagtcttccctctcggctccctaacagatCGCTCCCCAGACATTGACAATTACTCAGAAGAGGAGGAAGAAAGCTTCTCCTCAGAGCAAGATGACAGTGATCGATCCACTGCATGGGCAGgtatggacctgacagtggatgagtagaatgccatatttcccagttccatt Alignment from CESAR atCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGAC-GACCCATTGCATGGGCAG caggtgttacaaaaccctcactgcagtcttccctctcggctccctaacagatCGCTCCCCAGACATTGACAATTACTCAGAAGAGGAGGAAGAAAGCTTCTCCTCAGAGCAAGATGACAGTGATCGATCCACTGCATGGGCAGgtatggacctgacagtggatgagtagaatgccatatttcccagttccatt Alignment from Spaln_aa2Genome ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGAC-GACCCATTGCATGGGCAG caggtgttacaaaaccctcactgcagtcttccctctcggctccctaacagATCGCTCCCCAGACATTGACAATTACTCAGAAGAGGAGGAAGAAAGCTTCTCCTCAGAGCAAGATGACAGTGATcGATCCACTGCATGGGCAGgtatggacctgacagtggatgagtagaatgccatatttcccagttccatt Alignment from Spaln_nt2Genome ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGA-CGACCCATTGCATGGGCAG caggtgttacaaaaccctcactgcagtcttccctctcggctccctaacagATCGCTCCCCAGACATTGACAATTACTCAGAAGAGGAGGAAGAAAGCTTCTCCTCAGAGCAAGATGACAGTGATCGATCCACTGCATGGGCAGgtatggacctgacagtggatgagtagaatgccatatttcccagttccatt Alignment from Pairagon ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGA-CGACCCATTGCATGGGCAG caggtgttacaaaaccctcactgcagtcttccctctcggctccctaacagATCGCTCCCCAGACATTGACAATTACTCAGAAGAGGAGGAAGAAAGCTTCTCCTCAGAGCAAGATGACAGTGATCGATCCACTGCATGGGCAGgtatggacctgacagtggatgagtagaatgccatatttcccagttccatt Alignment from Exonerate_protein2genome ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGAC-GACCCATTGCATGGGCAG caggtgttacaaaaccctcactgcagtcttccctctcggctccctaacagATCGCTCCCCAGACATTGACAATTACTCAGAAGAGGAGGAAGAAAGCTTCTCCTCAGAGCAAGATGACAGTGATCGATCCACTGCATGGGCAGgtatggacctgacagtggatgagtagaatgccatatttcccagttccatt Alignment from Exonerate_coding2genome ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGTGAC-GACCCATTGCATGGGCAG caggtgttacaaaaccctcactgcagtcttccctctcggctccctaacagATCGCTCCCCAGACATTGACAATTACTCAGAAGAGGAGGAAGAAAGCTTCTCCTCAGAGCAAGATGACAGTGATCGATCCACTGCATGGGCAGgtatggacctgacagtggatgagtagaatgccatatttcccagttccatt Alignment from GeneWise ATCGCTCCCCAGATATTGACAACTACTCTGAAGAAGAGGAGGAAAGCTTCTCCTCAGAGCAGGAAGGCAGT-GACGACCCATTGCATGGGCAG caggtgttacaaaaccctcactgcagtcttccctctcggctccctaacagATCGCTCCCCAGACATTGACAATTACTCAGAAGAGGAGGAAGAAAGCTTCTCCTCAGAGCAAGATGACAGTGATCGATCCACTGCATGGGCAGgtatggacctgacagtggatgagtagaatgccatatttcccagttccatt #### Pcnxl3_ID1159_34 --> 2 - 0 Original Alignment gcAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCC-CCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tatgtgagacatcatgccagctgccatgtatgtggttctatttgttccaggcAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCACCCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCTGGCCCTGCTCTCCTCAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCGGAAGGGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGGGGTAGCCCCAAGTCTCAGgtgagcaacctgcggataaaggagcctccctgatcatgagctggatgctc Alignment from CESAR gcAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCA-CCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tatgtgagacatcatgccagctgccatgtatgtggttctatttgttccaggcAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCACCCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCTGGCCCTGCTCTCCTCAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCGGAAGGGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGGGGTAGCCCCAAGTCTCAGgtgagcaacctgcggataaaggagcctccctgatcatgagctggatgctc Alignment from Spaln_aa2Genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCA-CCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tatgtgagacatcatgccagctgccatgtatgtggttctatttgttccagGCAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCAcCCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCTGGCCCTGCTCTCCTCAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCGGAAGGGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGGGGTAGCCCCAAGTCTCAGgtgagcaacctgcggataaaggagcctccctgatcatgagctggatgctc Alignment from Spaln_nt2Genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCA-CCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tatgtgagacatcatgccagctgccatgtatgtggttctatttgttccagGCAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCACCCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCTGGCCCTGCTCTCCTCAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCGGAAGGGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGGGGTAGCCCCAAGTCTCAGgtgagcaacctgcggataaaggagcctccctgatcatgagctggatgctc Alignment from Pairagon GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCA-CCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tatgtgagacatcatgccagctgccatgtatgtggttctatttgttccagGCAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCACCCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCTGGCCCTGCTCTCCTCAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCGGAAGGGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGGGGTAGCCCCAAGTCTCAGgtgagcaacctgcggataaaggagcctccctgatcatgagctggatgctc Alignment from Exonerate_protein2genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCA-CCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tatgtgagacatcatgccagctgccatgtatgtggttctatttgttccagGCAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCACCCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCTGGCCCTGCTCTCCTCAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCGGAAGGGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGGGGTAGCCCCAAGTCTCAGgtgagcaacctgcggataaaggagcctccctgatcatgagctggatgctc Alignment from Exonerate_coding2genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCA-CCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tatgtgagacatcatgccagctgccatgtatgtggttctatttgttccagGCAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCACCCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCTGGCCCTGCTCTCCTCAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCGGAAGGGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGGGGTAGCCCCAAGTCTCAGgtgagcaacctgcggataaaggagcctccctgatcatgagctggatgctc Alignment from GeneWise GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCT-GCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG tatgtgagacatcatgccagctgccatgtatgtggttctatttgttccagGCAGCAGTGAGCAGCCCCTTCCACCAGGTCCTAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGGTGATGGGCGACCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCACCCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCTGGCCCTGCTCTCCTCAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCGGAAGGGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGGGGTAGCCCCAAGTCTCAGgtgagcaacctgcggataaaggagcctccctgatcatgagctggatgctc #### Pcnxl3_ID1161_32 --> 0 - 2 Original Alignment GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAG-CGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGag gcctatgttgctcctttgccccccctgactgccccttcctccatccacagGTAAACTGGGAATGTGTACGAGGACTGTGGGCTGGGCAGCAGCAAGAGCTGGTCTTTCTGTGCAATCGCAACCCTGAGCCGGGGCAGTGTTCAGAATGCCCAGCAGGCACTCTGCAACAAGATTAATTCCTCCTGTGACCAGCCACTAGGATATCCAATCTTTGTGTCACCACTGACCACGTCTTTGCCTGGGACCCATCCCCAATTGCAGGCACTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTTTTGCATAGCTGGGAGaggtaagttctggcggtccccaaacttgggaagcttttgcccaaacttggga Alignment from CESAR GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAG-CGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGag gcctatgttgctcctttgccccccctgactgccccttcctccatccacagGTAAACTGGGAATGTGTACGAGGACTGTGGGCTGGGCAGCAGCAAGAGCTGGTCTTTCTGTGCAATCGCAACCCTGAGCCGGGGCAGTGTTCAGAATGCCCAGCAGGCACTCTGCAACAAGATTAATTCCTCCTGTGACCAGCCACTAGGATATCCAATCTTTGTGTCACCACTGACCACGTCTTTGCCTGGGACCCATCCCCAATTGCAGGCACTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTTTTGCATAGCTGGGAGaggtaagttctggcggtccccaaacttgggaagcttttgcccaaacttggga Alignment from Spaln_aa2Genome GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGCGCGGC-AGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG gcctatgttgctcctttgccccccctgactgccccttcctccatccacagGTAAACTGGGAATGTGTACGAGGACTGTGGGCTGGGCAGCAGCAAGAGCTGGTCTTTCTGTGCAATCGCAACCCTGAGCCGGGGcAGTGTTCAGAATGCCCAGCAGGCACTCTGCAACAAGATTAATTCCTCCTGTGACCAGCCACTAGGATATCCAATCTTTGTGTCACCACTGACCACGTCTTTGCCTGGGACCCATCCCCAATTGCAGGCACTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTTTTGCATAGCTGGGAGAGgtaagttctggcggtccccaaacttgggaagcttttgcccaaacttggga Alignment from Spaln_nt2Genome GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAGC-GCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG gcctatgttgctcctttgccccccctgactgccccttcctccatccacagGTAAACTGGGAATGTGTACGAGGACTGTGGGCTGGGCAGCAGCAAGAGCTGGTCTTTCTGTGCAATCGCAACCCTGAGCCGGGGCAGTGTTCAGAATGCCCAGCAGGCACTCTGCAACAAGATTAATTCCTCCTGTGACCAGCCACTAGGATATCCAATCTTTGTGTCACCACTGACCACGTCTTTGCCTGGGACCCATCCCCAATTGCAGGCACTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTTTTGCATAGCTGGGAGAGgtaagttctggcggtccccaaacttgggaagcttttgcccaaacttggga Alignment from Pairagon GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAG-CGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG gcctatgttgctcctttgccccccctgactgccccttcctccatccacagGTAAACTGGGAATGTGTACGAGGACTGTGGGCTGGGCAGCAGCAAGAGCTGGTCTTTCTGTGCAATCGCAACCCTGAGCCGGGGCAGTGTTCAGAATGCCCAGCAGGCACTCTGCAACAAGATTAATTCCTCCTGTGACCAGCCACTAGGATATCCAATCTTTGTGTCACCACTGACCACGTCTTTGCCTGGGACCCATCCCCAATTGCAGGCACTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTTTTGCATAGCTGGGAGAGgtaagttctggcggtccccaaacttgggaagcttttgcccaaacttggga Alignment from Exonerate_protein2genome GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAG-CGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG gcctatgttgctcctttgccccccctgactgccccttcctccatccacagGTAAACTGGGAATGTGTACGAGGACTGTGGGCTGGGCAGCAGCAAGAGCTGGTCTTTCTGTGCAATCGCAACCCTGAGCCGGGGCAGTGTTCAGAATGCCCAGCAGGCACTCTGCAACAAGATTAATTCCTCCTGTGACCAGCCACTAGGATATCCAATCTTTGTGTCACCACTGACCACGTCTTTGCCTGGGACCCATCCCCAATTGCAGGCACTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTTTTGCATAGCTGGGAGAGgtaagttctggcggtccccaaacttgggaagcttttgcccaaacttggga Alignment from Exonerate_coding2genome GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCTGAG-CGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG gcctatgttgctcctttgccccccctgactgccccttcctccatccacagGTAAACTGGGAATGTGTACGAGGACTGTGGGCTGGGCAGCAGCAAGAGCTGGTCTTTCTGTGCAATCGCAACCCTGAGCCGGGGCAGTGTTCAGAATGCCCAGCAGGCACTCTGCAACAAGATTAATTCCTCCTGTGACCAGCCACTAGGATATCCAATCTTTGTGTCACCACTGACCACGTCTTTGCCTGGGACCCATCCCCAATTGCAGGCACTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTTTTGCATAGCTGGGAGAGgtaagttctggcggtccccaaacttgggaagcttttgcccaaacttggga Alignment from GeneWise GTAAACCGAGAGTGTGTGCGTGGGCTGTGGGCTGGGCAGCAACAAGAGCTGGTGTTCCTGCGCAACCGCAACCCT-GAGCGCGGCAGCATCCAGAATGCCAAGCAGGCACTCCGCAACATGATCAATTCCTCCTGCGACCAGCCACTGGGATATCCCATCTACGTGTCACCTCTTACCACATCTCTGGCTGGTAGCCACCCCCAACTGCGGGCGCTGTGGGGTGGTCCTGTCAGCCTGGGTGCCATTGCCCGATGGCTCTTGCGCAGCTGGGAGAG gcctatgttgctcctttgccccccctgactgccccttcctccatccacagGTAAACTGGGAATGTGTACGAGGACTGTGGGCTGGGCAGCAGCAAGAGCTGGTCTTTCTGTGCAATCGCAACCCTGAGCCGGGGCAGTGTTCAGAATGCCCAGCAGGCACTCTGCAACAAGATTAATTCCTCCTGTGACCAGCCACTAGGATATCCAATCTTTGTGTCACCACTGACCACGTCTTTGCCTGGGACCCATCCCCAATTGCAGGCACTGTGGGGTGGTCCTGTCAGCTTGGGTGCCATTGCCCGATGGCTTTTGCATAGCTGGGAGAGgtaagttctggcggtccccaaacttgggaagcttttgcccaaacttggga #### Pcnxl3_ID1162_31 --> 0 - 0 Original Alignment GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAG-TACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG acatgccttccccttaacttggtccctgttactgacatctgtgctcttagGATCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCCCTGTATGACACCATTGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCCATTCTCAGCAACACCCCCTCCCTACTGGTGCTCCGCCATGACATGGATGACGCCTCTGATGAGCTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatcaattaagcagcctatgttgctcctttgcc Alignment from CESAR GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAG-TACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG acatgccttccccttaacttggtccctgttactgacatctgtgctcttagGATCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCCCTGTATGACACCATTGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCCATTCTCAGCAACACCCCCTCCCTACTGGTGCTCCGCCATGACATGGATGACGCCTCTGATGAGCTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatcaattaagcagcctatgttgctcctttgcc Alignment from Spaln_aa2Genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAG-TACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG acatgccttccccttaacttggtccctgttactgacatctgtgctcttagGATCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCCCTGTATGACACCATTGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCCATTCTCAGCAACACCCCCTCCCTACTGGTGCTCCGCCATGACATGGATGACGCCTCTGATGAGcTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatcaattaagcagcctatgttgctcctttgcc Alignment from Spaln_nt2Genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAG-TACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG acatgccttccccttaacttggtccctgttactgacatctgtgctcttagGATCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCCCTGTATGACACCATTGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCCATTCTCAGCAACACCCCCTCCCTACTGGTGCTCCGCCATGACATGGATGACGCCTCTGATGAGCTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatcaattaagcagcctatgttgctcctttgcc Alignment from Pairagon GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAG-TACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG acatgccttccccttaacttggtccctgttactgacatctgtgctcttagGATCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCCCTGTATGACACCATTGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCCATTCTCAGCAACACCCCCTCCCTACTGGTGCTCCGCCATGACATGGATGACGCCTCTGATGAGCTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatcaattaagcagcctatgttgctcctttgcc Alignment from Exonerate_protein2genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAG-TACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG acatgccttccccttaacttggtccctgttactgacatctgtgctcttagGATCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCCCTGTATGACACCATTGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCCATTCTCAGCAACACCCCCTCCCTACTGGTGCTCCGCCATGACATGGATGACGCCTCTGATGAGCTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatcaattaagcagcctatgttgctcctttgcc Alignment from Exonerate_coding2genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGACGAG-TACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG acatgccttccccttaacttggtccctgttactgacatctgtgctcttagGATCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCCCTGTATGACACCATTGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCCATTCTCAGCAACACCCCCTCCCTACTGGTGCTCCGCCATGACATGGATGACGCCTCTGATGAGCTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatcaattaagcagcctatgttgctcctttgcc Alignment from GeneWise GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCATGTCATGGACGACGCTTCTGAC-GAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG acatgccttccccttaacttggtccctgttactgacatctgtgctcttagGATCATTTCACATCTCCTGACGAGTATGAGGAACCAGCAGCCCTGTATGACACCATTGCAGCCAATGAGGAACGGCTTGTCATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCCATTCTCAGCAACACCCCCTCCCTACTGGTGCTCCGCCATGACATGGATGACGCCTCTGATGAGCTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtaaggcaaatggtcttaatcaattaagcagcctatgttgctcctttgcc #### Pcnxl3_ID1164_29 --> 0 - 2 Original Alignment CCCGTGGACCAGGACTGGAATTCACCGTTG-GTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCag attgtgttgcctggggtctttgggtaaatcttttatttttttgtttctagCCCGTGGACCAGGACTGGAATTCACCATTGCGTTACATTGTGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCaggtaggagcccacaggcagcagaagagcccaacaactcattagtacactta Alignment from CESAR CCCGTGGACCAGGACTGGAATTCACCGTTG-GTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCag attgtgttgcctggggtctttgggtaaatcttttatttttttgtttctagCCCGTGGACCAGGACTGGAATTCACCATTGCGTTACATTGTGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCaggtaggagcccacaggcagcagaagagcccaacaactcattagtacactta Alignment from Spaln_aa2Genome CCCGTGGACCAGGACTGGAATTCACCGTTG-GTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG attgtgttgcctggggtctttgggtaaatcttttatttttttgtttctagCCCGTGGACCAGGACTGGAATTCACCATTGcGTTACATTGTGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCAGgtaggagcccacaggcagcagaagagcccaacaactcattagtacactta Alignment from Spaln_nt2Genome CCCGTGGACCAGGACTGGAATTCACCGTTG-GTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG attgtgttgcctggggtctttgggtaaatcttttatttttttgtttctagCCCGTGGACCAGGACTGGAATTCACCATTGCGTTACATTGTGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCAGgtaggagcccacaggcagcagaagagcccaacaactcattagtacactta Alignment from Pairagon CCCGTGGACCAGGACTGGAATTCACCGTTG-GTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG attgtgttgcctggggtctttgggtaaatcttttatttttttgtttctagCCCGTGGACCAGGACTGGAATTCACCATTGCGTTACATTGTGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCAGgtaggagcccacaggcagcagaagagcccaacaactcattagtacactta Alignment from Exonerate_protein2genome CCCGTGGACCAGGACTGGAATTCACCGTTG-GTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG attgtgttgcctggggtctttgggtaaatcttttatttttttgtttctagCCCGTGGACCAGGACTGGAATTCACCATTGCGTTACATTGTGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCAGgtaggagcccacaggcagcagaagagcccaacaactcattagtacactta Alignment from Exonerate_coding2genome CCCGTGGACCAGGACTGGAATTCACCGTTG-GTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG attgtgttgcctggggtctttgggtaaatcttttatttttttgtttctagCCCGTGGACCAGGACTGGAATTCACCATTGCGTTACATTGTGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCAGgtaggagcccacaggcagcagaagagcccaacaactcattagtacactta Alignment from GeneWise CCCGTGGACCAGGACTGGAATTCACCGTTG-GTTACACTGTGCTTTGGCCTGTGTGTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG attgtgttgcctggggtctttgggtaaatcttttatttttttgtttctagCCCGTGGACCAGGACTGGAATTCACCATTGCGTTACATTGTGCTTTGGCTTGTGTGTGTTGGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCAGgtaggagcccacaggcagcagaagagcccaacaactcattagtacactta #### Pcnxl3_ID1174_19 --> 0 - 0 Original Alignment CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTG-CTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgtcacagtgctattggcagtcactgtaggtgtttggcccttccctcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGCCTCATCTTTGCTGTCAGTGCTAGTACTGTGTTCATTGCCTTGAAAgtgagtgcagaatgggtacaccttttggcatagatcaggatgctgctatg Alignment from CESAR CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTG-CTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgtcacagtgctattggcagtcactgtaggtgtttggcccttccctcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGCCTCATCTTTGCTGTCAGTGCTAGTACTGTGTTCATTGCCTTGAAAgtgagtgcagaatgggtacaccttttggcatagatcaggatgctgctatg Alignment from Spaln_aa2Genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTG-CTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgtcacagtgctattggcagtcactgtaggtgtttggcccttccctcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGcCTCATCTTTGCTGTCAGTGCTAGTACTGTGTTCATTGCCTTGAAAgtgagtgcagaatgggtacaccttttggcatagatcaggatgctgctatg Alignment from Spaln_nt2Genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTG-CTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgtcacagtgctattggcagtcactgtaggtgtttggcccttccctcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGCCTCATCTTTGCTGTCAGTGCTAGTACTGTGTTCATTGCCTTGAAAgtgagtgcagaatgggtacaccttttggcatagatcaggatgctgctatg Alignment from Pairagon CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTG-CTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgtcacagtgctattggcagtcactgtaggtgtttggcccttccctcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGCCTCATCTTTGCTGTCAGTGCTAGTACTGTGTTCATTGCCTTGAAAgtgagtgcagaatgggtacaccttttggcatagatcaggatgctgctatg Alignment from Exonerate_protein2genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTG-CTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgtcacagtgctattggcagtcactgtaggtgtttggcccttccctcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGCCTCATCTTTGCTGTCAGTGCTAGTACTGTGTTCATTGCCTTGAAAgtgagtgcagaatgggtacaccttttggcatagatcaggatgctgctatg Alignment from Exonerate_coding2genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTG-CTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgtcacagtgctattggcagtcactgtaggtgtttggcccttccctcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGCCTCATCTTTGCTGTCAGTGCTAGTACTGTGTTCATTGCCTTGAAAgtgagtgcagaatgggtacaccttttggcatagatcaggatgctgctatg Alignment from GeneWise CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCC-GTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG ctgtcacagtgctattggcagtcactgtaggtgtttggcccttccctcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGCCTCATCTTTGCTGTCAGTGCTAGTACTGTGTTCATTGCCTTGAAAgtgagtgcagaatgggtacaccttttggcatagatcaggatgctgctatg #### Pcnxl3_ID1175_18 --> 1 - 0 Original Alignment gTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACA-GCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG ttacctgtgtgtaaagcttgccttgatccatttttttttcttctttacaggTCTCTAGTCCAAAGTAAACTTTTCCCTGAGCTAGAAGAGCGGAGCCTAGAGACACGCCCGGGTGGAACCCCCAGACCCACTGCCAGAGAAGATGCATCAGTCAGTGgtaagtagccagcagttgatgagtgtttgtttgtatggggttccagcagg Alignment from CESAR gTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACA-GCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG ttacctgtgtgtaaagcttgccttgatccatttttttttcttctttacaggTCTCTAGTCCAAAGTAAACTTTTCCCTGAGCTAGAAGAGCGGAGCCTAGAGACACGCCCGGGTGGAACCCCCAGACCCACTGCCAGAGAAGATGCATCAGTCAGTGgtaagtagccagcagttgatgagtgtttgtttgtatggggttccagcagg Alignment from Spaln_aa2Genome GTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACA-GCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG ttacctgtgtgtaaagcttgccttgatccatttttttttcttctttacagGTCTCTAGTCCAAAGTAAACTTTTCCCTGAGCTAGAAGAGCGGAGCCTAGAGACAcGCCCGGGTGGAACCCCCAGACCCACTGCCAGAGAAGATGCATCAGTCAGTGgtaagtagccagcagttgatgagtgtttgtttgtatggggttccagcagg Alignment from Spaln_nt2Genome GTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACA-GCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG ttacctgtgtgtaaagcttgccttgatccatttttttttcttctttacagGTCTCTAGTCCAAAGTAAACTTTTCCCTGAGCTAGAAGAGCGGAGCCTAGAGACACGCCCGGGTGGAACCCCCAGACCCACTGCCAGAGAAGATGCATCAGTCAGTGgtaagtagccagcagttgatgagtgtttgtttgtatggggttccagcagg Alignment from Pairagon GTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACA-GCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG ttacctgtgtgtaaagcttgccttgatccatttttttttcttctttacagGTCTCTAGTCCAAAGTAAACTTTTCCCTGAGCTAGAAGAGCGGAGCCTAGAGACACGCCCGGGTGGAACCCCCAGACCCACTGCCAGAGAAGATGCATCAGTCAGTGgtaagtagccagcagttgatgagtgtttgtttgtatggggttccagcagg Alignment from Exonerate_protein2genome GTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACA-GCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG ttacctgtgtgtaaagcttgccttgatccatttttttttcttctttacagGTCTCTAGTCCAAAGTAAACTTTTCCCTGAGCTAGAAGAGCGGAGCCTAGAGACACGCCCGGGTGGAACCCCCAGACCCACTGCCAGAGAAGATGCATCAGTCAGTGgtaagtagccagcagttgatgagtgtttgtttgtatggggttccagcagg Alignment from Exonerate_coding2genome GTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACA-GCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG ttacctgtgtgtaaagcttgccttgatccatttttttttcttctttacagGTCTCTAGTCCAAAGTAAACTTTTCCCTGAGCTAGAAGAGCGGAGCCTAGAGACACGCCCGGGTGGAACCCCCAGACCCACTGCCAGAGAAGATGCATCAGTCAGTGgtaagtagccagcagttgatgagtgtttgtttgtatggggttccagcagg Alignment from GeneWise GTCTCTAGTCCGGAGTAAACTCTTCCCTGAGCTAGAGGAGCGGAGCCTAGAGACA-GCCCGGGTCGAACCCCCAGACCCACTGCCAGAGAAGATGCGTCAGTCAGTG ttacctgtgtgtaaagcttgccttgatccatttttttttcttctttacagGTCTCTAGTCCAAAGTAAACTTTTCCCTGAGCTAGAAGAGCGGAGCCTAGAGACACGCCCGGGTGGAACCCCCAGACCCACTGCCAGAGAAGATGCATCAGTCAGTGgtaagtagccagcagttgatgagtgtttgtttgtatggggttccagcagg #### Pcnxl3_ID1179_14 --> 0 - 1 Original Alignment GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTAC-GGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTg atggtccaaaatcctcgttagcccactctaaaaatgtgtttggcctttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTCTACTTTTGTATTTGTTGTCTGCTCATCTGGTTGCTGGACGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTGTATCGGCCTCACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCCACTggtaagtcgggacaagatagatcaagggactgagtctgaatgctgggcttt Alignment from CESAR GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTAC-GGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTg atggtccaaaatcctcgttagcccactctaaaaatgtgtttggcctttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTCTACTTTTGTATTTGTTGTCTGCTCATCTGGTTGCTGGACGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTGTATCGGCCTCACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCCACTggtaagtcgggacaagatagatcaagggactgagtctgaatgctgggcttt Alignment from Spaln_aa2Genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTAC-GGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG atggtccaaaatcctcgttagcccactctaaaaatgtgtttggcctttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTCTACTTTTGTATTTGTTGTCTGCTCATCTGGTTGCTGGACGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTGTATcGGCCTCACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCCACTGgtaagtcgggacaagatagatcaagggactgagtctgaatgctgggcttt Alignment from Spaln_nt2Genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTA-CGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG atggtccaaaatcctcgttagcccactctaaaaatgtgtttggcctttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTCTACTTTTGTATTTGTTGTCTGCTCATCTGGTTGCTGGACGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTGTATCGGCCTCACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCCACTGgtaagtcgggacaagatagatcaagggactgagtctgaatgctgggcttt Alignment from Pairagon GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTA-CGGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG atggtccaaaatcctcgttagcccactctaaaaatgtgtttggcctttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTCTACTTTTGTATTTGTTGTCTGCTCATCTGGTTGCTGGACGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTGTATCGGCCTCACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCCACTGgtaagtcgggacaagatagatcaagggactgagtctgaatgctgggcttt Alignment from Exonerate_protein2genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTAC-GGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG atggtccaaaatcctcgttagcccactctaaaaatgtgtttggcctttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTCTACTTTTGTATTTGTTGTCTGCTCATCTGGTTGCTGGACGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTGTATCGGCCTCACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCCACTGgtaagtcgggacaagatagatcaagggactgagtctgaatgctgggcttt Alignment from Exonerate_coding2genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTAC-GGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG atggtccaaaatcctcgttagcccactctaaaaatgtgtttggcctttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTCTACTTTTGTATTTGTTGTCTGCTCATCTGGTTGCTGGACGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTGTATCGGCCTCACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCCACTGgtaagtcgggacaagatagatcaagggactgagtctgaatgctgggcttt Alignment from GeneWise GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTAC-GGCCTCACACTCTTCTCTGCCTCTTTCTTCTTTTGTGCCCGAGATGTGGCCACTG atggtccaaaatcctcgttagcccactctaaaaatgtgtttggcctttagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTCTACTTTTGTATTTGTTGTCTGCTCATCTGGTTGCTGGACGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTGTATCGGCCTCACCCTCTTTTCTGCCTCTTTCTTCTTTTGTGCACGAGATGTGGCCACTGgtaagtcgggacaagatagatcaagggactgagtctgaatgctgggcttt #### Pcnxl3_ID1186_7 --> 2 - 2 Original Alignment caCCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTG-AGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTag gctcctcccagctcagtttgtgacttatctgtttctatttttaacccaagcaCCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGCGCAGGAGAGCGCAGGCTATCTGGAGACGTCACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGGGCTCACCACCTaggtgagtagctgttcaatgattccagtacagaaggggggactgggtctcct Alignment from CESAR caCCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTG-AGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTag gctcctcccagctcagtttgtgacttatctgtttctatttttaacccaagcaCCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGCGCAGGAGAGCGCAGGCTATCTGGAGACGTCACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGGGCTCACCACCTaggtgagtagctgttcaatgattccagtacagaaggggggactgggtctcct Alignment from Spaln_aa2Genome CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTG-AGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAG gctcctcccagctcagtttgtgacttatctgtttctatttttaacccaagCACCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGCGcAGGAGAGCGCAGGCTATCTGGAGACGTCACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGGGCTCACCACCTAGgtgagtagctgttcaatgattccagtacagaaggggggactgggtctcct Alignment from Spaln_nt2Genome CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTG-AGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAG gctcctcccagctcagtttgtgacttatctgtttctatttttaacccaagCACCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGCGCAGGAGAGCGCAGGCTATCTGGAGACGTCACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGGGCTCACCACCTAGgtgagtagctgttcaatgattccagtacagaaggggggactgggtctcct Alignment from Pairagon CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTG-AGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAG gctcctcccagctcagtttgtgacttatctgtttctatttttaacccaagCACCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGCGCAGGAGAGCGCAGGCTATCTGGAGACGTCACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGGGCTCACCACCTAGgtgagtagctgttcaatgattccagtacagaaggggggactgggtctcct Alignment from Exonerate_protein2genome CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTG-AGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAG gctcctcccagctcagtttgtgacttatctgtttctatttttaacccaagCACCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGCGCAGGAGAGCGCAGGCTATCTGGAGACGTCACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGGGCTCACCACCTAGgtgagtagctgttcaatgattccagtacagaaggggggactgggtctcct Alignment from Exonerate_coding2genome CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAATGTG-AGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAG gctcctcccagctcagtttgtgacttatctgtttctatttttaacccaagCACCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGCGCAGGAGAGCGCAGGCTATCTGGAGACGTCACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGGGCTCACCACCTAGgtgagtagctgttcaatgattccagtacagaaggggggactgggtctcct Alignment from GeneWise CACCTGAGGAAACAGGTCAGCGGGAATGCACAAGCAAT-GTGAGGAGAGCTCAAGCTATCCGGAGACGACACAATGCAGGCAGCAACCCTACGCCTCCAGCCTCTGTCATGGGCTCACCACCTAG gctcctcccagctcagtttgtgacttatctgtttctatttttaacccaagCACCTGAGGAGACAGGTCAGCGGGAATGCACAAGCAATGCGCAGGAGAGCGCAGGCTATCTGGAGACGTCACAATGCAGGCAGCAACCCCACACCTCCAGCCTCTGTCATGGGCTCACCACCTAGgtgagtagctgttcaatgattccagtacagaaggggggactgggtctcct #### Pcx_ID553_3 --> 2 - 0 Original Alignment gtGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGG-CAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcaggaccaggatggtctctccatctctttctgtttgtaggtGAAATTGCAATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGGCTGTGTACTCAGAGCAGGACACAGGGCAGATGCACAGGCCAGAAAGCAGATGAGGGTTATCTTCTTGGCCGTGGCCTGGCACCTGTTCAAGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtgagtatgccagggtttctgcaggctgggtaggatcctgttttacactc Alignment from CESAR gtGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGG-CAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcaggaccaggatggtctctccatctctttctgtttgtaggtGAAATTGCAATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGGCTGTGTACTCAGAGCAGGACACAGGGCAGATGCACAGGCCAGAAAGCAGATGAGGGTTATCTTCTTGGCCGTGGCCTGGCACCTGTTCAAGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtgagtatgccagggtttctgcaggctgggtaggatcctgttttacactc Alignment from Spaln_aa2Genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGG-CAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcaggaccaggatggtctctccatctctttctgtttgtagGTGAAATTGCAATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGGCTGTGTACTCAGAGCAGGACACAGGGCAGATGCACAGGcCAGAAAGCAGATGAGGGTTATCTTCTTGGCCGTGGCCTGGCACCTGTTCAAGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtgagtatgccagggtttctgcaggctgggtaggatcctgttttacactc Alignment from Spaln_nt2Genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGC-AGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcaggaccaggatggtctctccatctctttctgtttgtagGTGAAATTGCAATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGGCTGTGTACTCAGAGCAGGACACAGGGCAGATGCACAGGCCAGAAAGCAGATGAGGGTTATCTTCTTGGCCGTGGCCTGGCACCTGTTCAAGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtgagtatgccagggtttctgcaggctgggtaggatcctgttttacactc Alignment from Pairagon GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGG-CAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcaggaccaggatggtctctccatctctttctgtttgtagGTGAAATTGCAATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGGCTGTGTACTCAGAGCAGGACACAGGGCAGATGCACAGGCCAGAAAGCAGATGAGGGTTATCTTCTTGGCCGTGGCCTGGCACCTGTTCAAGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtgagtatgccagggtttctgcaggctgggtaggatcctgttttacactc Alignment from Exonerate_protein2genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGG-CAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcaggaccaggatggtctctccatctctttctgtttgtagGTGAAATTGCAATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGGCTGTGTACTCAGAGCAGGACACAGGGCAGATGCACAGGCCAGAAAGCAGATGAGGGTTATCTTCTTGGCCGTGGCCTGGCACCTGTTCAAGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtgagtatgccagggtttctgcaggctgggtaggatcctgttttacactc Alignment from Exonerate_coding2genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGG-CAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcaggaccaggatggtctctccatctctttctgtttgtagGTGAAATTGCAATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGGCTGTGTACTCAGAGCAGGACACAGGGCAGATGCACAGGCCAGAAAGCAGATGAGGGTTATCTTCTTGGCCGTGGCCTGGCACCTGTTCAAGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtgagtatgccagggtttctgcaggctgggtaggatcctgttttacactc Alignment from GeneWise GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGG-CAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcaggaccaggatggtctctccatctctttctgtttgtagGTGAAATTGCAATCCGAGTGTTTCGTGCATGCACAGAACTGGGTATCCGCACAGTGGCTGTGTACTCAGAGCAGGACACAGGGCAGATGCACAGGCCAGAAAGCAGATGAGGGTTATCTTCTTGGCCGTGGCCTGGCACCTGTTCAAGCCTACCTGCACATTCCAGACATCATCAGGGTGGCCAAAgtgagtatgccagggtttctgcaggctgggtaggatcctgttttacactc #### Pcx_ID554_4 --> 0 - 1 Original Alignment GAAAATGGTGTAGATGCGGTG-CATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAg gactaaagagagtgaagaacatcagtagcgctctattttctttgccctagGAAAATGGTGAAGATGCAGTGCCATCCCGGCTATGGATTTCTCTCAGAGCGGGCTGACTTTGCCCAGGCCTGCCAAGATACTGGAGTTCGATTCATTGGTCCAAGCCCAGAGGTTGTACTTAAAATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATAGATGCAggtaacctaagaaacacaccctgagccaggagagacagtacaggcattctg Alignment from CESAR GAAAATGGTGTAGATGCGGTG-CATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAg gactaaagagagtgaagaacatcagtagcgctctattttctttgccctagGAAAATGGTGAAGATGCAGTGCCATCCCGGCTATGGATTTCTCTCAGAGCGGGCTGACTTTGCCCAGGCCTGCCAAGATACTGGAGTTCGATTCATTGGTCCAAGCCCAGAGGTTGTACTTAAAATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATAGATGCAggtaacctaagaaacacaccctgagccaggagagacagtacaggcattctg Alignment from Spaln_aa2Genome GAAAATGGTGTAGATGCGGTG-CATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gactaaagagagtgaagaacatcagtagcgctctattttctttgccctagGAAAATGGTGAAGATGCAGTGcCATCCCGGCTATGGATTTCTCTCAGAGCGGGCTGACTTTGCCCAGGCCTGCCAAGATACTGGAGTTCGATTCATTGGTCCAAGCCCAGAGGTTGTACTTAAAATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATAGATGCAGgtaacctaagaaacacaccctgagccaggagagacagtacaggcattctg Alignment from Spaln_nt2Genome GAAAATGGTGTAGATGCGGTGC-ATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gactaaagagagtgaagaacatcagtagcgctctattttctttgccctagGAAAATGGTGAAGATGCAGTGCCATCCCGGCTATGGATTTCTCTCAGAGCGGGCTGACTTTGCCCAGGCCTGCCAAGATACTGGAGTTCGATTCATTGGTCCAAGCCCAGAGGTTGTACTTAAAATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATAGATGCAGgtaacctaagaaacacaccctgagccaggagagacagtacaggcattctg Alignment from Pairagon GAAAATGGTGTAGATGCGGTG-CATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gactaaagagagtgaagaacatcagtagcgctctattttctttgccctagGAAAATGGTGAAGATGCAGTGCCATCCCGGCTATGGATTTCTCTCAGAGCGGGCTGACTTTGCCCAGGCCTGCCAAGATACTGGAGTTCGATTCATTGGTCCAAGCCCAGAGGTTGTACTTAAAATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATAGATGCAGgtaacctaagaaacacaccctgagccaggagagacagtacaggcattctg Alignment from Exonerate_protein2genome GAAAATGGTGTAGATGCGGTG-CATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gactaaagagagtgaagaacatcagtagcgctctattttctttgccctagGAAAATGGTGAAGATGCAGTGCCATCCCGGCTATGGATTTCTCTCAGAGCGGGCTGACTTTGCCCAGGCCTGCCAAGATACTGGAGTTCGATTCATTGGTCCAAGCCCAGAGGTTGTACTTAAAATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATAGATGCAGgtaacctaagaaacacaccctgagccaggagagacagtacaggcattctg Alignment from Exonerate_coding2genome GAAAATGGTGTAGATGCGGTG-CATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gactaaagagagtgaagaacatcagtagcgctctattttctttgccctagGAAAATGGTGAAGATGCAGTGCCATCCCGGCTATGGATTTCTCTCAGAGCGGGCTGACTTTGCCCAGGCCTGCCAAGATACTGGAGTTCGATTCATTGGTCCAAGCCCAGAGGTTGTACTTAAAATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATAGATGCAGgtaacctaagaaacacaccctgagccaggagagacagtacaggcattctg Alignment from GeneWise GAAAATGGTGTAGATGCG-GTGCATCCTGGCTATGGGTTCCTCTCAGAGCGAGCAGACTTTGCCCAGGCCTGCCAAGATGCTGGAGTCCGGTTCATTGGTCCAAGCCCAGAGGTGGTCCGCAAGATGGGAGACAAGGTGGAAGCCCGGGCCATTGCCATCGCTGCAG gactaaagagagtgaagaacatcagtagcgctctattttctttgccctagGAAAATGGTGAAGATGCAGTGCCATCCCGGCTATGGATTTCTCTCAGAGCGGGCTGACTTTGCCCAGGCCTGCCAAGATACTGGAGTTCGATTCATTGGTCCAAGCCCAGAGGTTGTACTTAAAATGGGAGACAAGGTGGAAGCCCGGGCTATTGCCATAGATGCAGgtaacctaagaaacacaccctgagccaggagagacagtacaggcattctg #### Pcx_ID555_5 --> 2 - 0 Original Alignment gcGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGC-CGCGGCATGCGGGTCGTGCATAGCTATGAG agccaggagagacagtacaggcattctgttttgtctcccttgaattttaggtGCTCCAGTGGTTCCTGGAACAGACTCCCCCATCAGCTCCTTACATGAAGCACATGAGTTCTCCAACACCTATGATTCTCCAATTATTTTCAAGGCTGCCTATGGAGGTGGGGGCCCGTGGTATGAGGGTTGTGCATAGCTATGAGgtaagtggaggagcatatatactatagtctctgtggtaagctagcagcca Alignment from CESAR gcGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGC-CGCGGCATGCGGGTCGTGCATAGCTATGAG agccaggagagacagtacaggcattctgttttgtctcccttgaattttaggtGCTCCAGTGGTTCCTGGAACAGACTCCCCCATCAGCTCCTTACATGAAGCACATGAGTTCTCCAACACCTATGATTCTCCAATTATTTTCAAGGCTGCCTATGGAGGTGGGGGCCCGTGGTATGAGGGTTGTGCATAGCTATGAGgtaagtggaggagcatatatactatagtctctgtggtaagctagcagcca Alignment from Spaln_aa2Genome GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGC-CGCGGCATGCGGGTCGTGCATAGCTATGAG agccaggagagacagtacaggcattctgttttgtctcccttgaattttagGTGCTCCAGTGGTTCCTGGAACAGACTCCCCCATCAGCTCCTTACATGAAGCACATGAGTTCTCCAACACCTATGATTCTCCAATTATTTTCAAGGCTGCCTATGGAGGTGGGGGCcCGTGGTATGAGGGTTGTGCATAGCTATGAGgtaagtggaggagcatatatactatagtctctgtggtaagctagcagcca Alignment from Spaln_nt2Genome GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCC-GCGGCATGCGGGTCGTGCATAGCTATGAG agccaggagagacagtacaggcattctgttttgtctcccttgaattttagGTGCTCCAGTGGTTCCTGGAACAGACTCCCCCATCAGCTCCTTACATGAAGCACATGAGTTCTCCAACACCTATGATTCTCCAATTATTTTCAAGGCTGCCTATGGAGGTGGGGGCCCGTGGTATGAGGGTTGTGCATAGCTATGAGgtaagtggaggagcatatatactatagtctctgtggtaagctagcagcca Alignment from Pairagon GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGG-CCGCGGCATGCGGGTCGTGCATAGCTATGAG agccaggagagacagtacaggcattctgttttgtctcccttgaattttagGTGCTCCAGTGGTTCCTGGAACAGACTCCCCCATCAGCTCCTTACATGAAGCACATGAGTTCTCCAACACCTATGATTCTCCAATTATTTTCAAGGCTGCCTATGGAGGTGGGGGCCCGTGGTATGAGGGTTGTGCATAGCTATGAGgtaagtggaggagcatatatactatagtctctgtggtaagctagcagcca Alignment from Exonerate_protein2genome GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGC-CGCGGCATGCGGGTCGTGCATAGCTATGAG agccaggagagacagtacaggcattctgttttgtctcccttgaattttagGTGCTCCAGTGGTTCCTGGAACAGACTCCCCCATCAGCTCCTTACATGAAGCACATGAGTTCTCCAACACCTATGATTCTCCAATTATTTTCAAGGCTGCCTATGGAGGTGGGGGCCCGTGGTATGAGGGTTGTGCATAGCTATGAGgtaagtggaggagcatatatactatagtctctgtggtaagctagcagcca Alignment from Exonerate_coding2genome GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGC-CGCGGCATGCGGGTCGTGCATAGCTATGAG agccaggagagacagtacaggcattctgttttgtctcccttgaattttagGTGCTCCAGTGGTTCCTGGAACAGACTCCCCCATCAGCTCCTTACATGAAGCACATGAGTTCTCCAACACCTATGATTCTCCAATTATTTTCAAGGCTGCCTATGGAGGTGGGGGCCCGTGGTATGAGGGTTGTGCATAGCTATGAGgtaagtggaggagcatatatactatagtctctgtggtaagctagcagcca Alignment from GeneWise GCGTTCCAGTGGTCCCCGGCACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGC-CGCGGCATGCGGGTCGTGCATAGCTATGAG agccaggagagacagtacaggcattctgttttgtctcccttgaattttagGTGCTCCAGTGGTTCCTGGAACAGACTCCCCCATCAGCTCCTTACATGAAGCACATGAGTTCTCCAACACCTATGATTCTCCAATTATTTTCAAGGCTGCCTATGGAGGTGGGGGCCCGTGGTATGAGGGTTGTGCATAGCTATGAGgtaagtggaggagcatatatactatagtctctgtggtaagctagcagcca #### Pcx_ID556_6 --> 0 - 1 Original Alignment GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCA-AGGCACATTGAGGTGCAGATCCTAg cacatccacagtgctgccacatgcctgcgtcgggtcgcggtgtctcccagGAGCTGGAAGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCTTTTGGGAACAGAGCACTGTTTGTGGAGAAGTTTATTGGACAGCCACAGCCACATTGAGGTGCAGATCCTAggtaagagaggaactgtctggaactgtctgacacaacagaaacctaccttg Alignment from CESAR GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGG-CACATTGAGGTGCAGATCCTAg cacatccacagtgctgccacatgcctgcgtcgggtcgcggtgtctcccagGAGCTGGAAGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCTTTTGGGAACAGAGCACTGTTTGTGGAGAAGTTTATTGGACAGCCACAGCCACATTGAGGTGCAGATCCTAggtaagagaggaactgtctggaactgtctgacacaacagaaacctaccttg Alignment from Spaln_aa2Genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGG-CACATTGAGGTGCAGATCCTAG cacatccacagtgctgccacatgcctgcgtcgggtcgcggtgtctcccagGAGCTGGAAGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCTTTTGGGAACAGAGCACTGTTTGTGGAGAAGTTTATTGGACAGCCACAGcCACATTGAGGTGCAGATCCTAGgtaagagaggaactgtctggaactgtctgacacaacagaaacctaccttg Alignment from Spaln_nt2Genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCA-AGGCACATTGAGGTGCAGATCCTAG cacatccacagtgctgccacatgcctgcgtcgggtcgcggtgtctcccagGAGCTGGAAGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCTTTTGGGAACAGAGCACTGTTTGTGGAGAAGTTTATTGGACAGCCACAGCCACATTGAGGTGCAGATCCTAGgtaagagaggaactgtctggaactgtctgacacaacagaaacctaccttg Alignment from Pairagon GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCA-AGGCACATTGAGGTGCAGATCCTAG cacatccacagtgctgccacatgcctgcgtcgggtcgcggtgtctcccagGAGCTGGAAGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCTTTTGGGAACAGAGCACTGTTTGTGGAGAAGTTTATTGGACAGCCACAGCCACATTGAGGTGCAGATCCTAGgtaagagaggaactgtctggaactgtctgacacaacagaaacctaccttg Alignment from Exonerate_protein2genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGG-CACATTGAGGTGCAGATCCTAG cacatccacagtgctgccacatgcctgcgtcgggtcgcggtgtctcccagGAGCTGGAAGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCTTTTGGGAACAGAGCACTGTTTGTGGAGAAGTTTATTGGACAGCCACAGCCACATTGAGGTGCAGATCCTAGgtaagagaggaactgtctggaactgtctgacacaacagaaacctaccttg Alignment from Exonerate_coding2genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGG-CACATTGAGGTGCAGATCCTAG cacatccacagtgctgccacatgcctgcgtcgggtcgcggtgtctcccagGAGCTGGAAGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCTTTTGGGAACAGAGCACTGTTTGTGGAGAAGTTTATTGGACAGCCACAGCCACATTGAGGTGCAGATCCTAGgtaagagaggaactgtctggaactgtctgacacaacagaaacctaccttg Alignment from GeneWise GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCA-AGGCACATTGAGGTGCAGATCCTAG cacatccacagtgctgccacatgcctgcgtcgggtcgcggtgtctcccagGAGCTGGAAGAGAATTATACCCGAGCCTACTCCGAGGCCTTGGCAGCTTTTGGGAACAGAGCACTGTTTGTGGAGAAGTTTATTGGACAGCCACAGCCACATTGAGGTGCAGATCCTAGgtaagagaggaactgtctggaactgtctgacacaacagaaacctaccttg #### Pcx_ID563_12 --> 2 - 1 Original Alignment gaCATGTCATGGTGAATGGCCCTACCACTCCAATCCCT-GTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAg actctggactcctggaagcagccgtcactgtgttttttgttgttttgcaggaCATGTTATGGTGAATGGCCCTACCACCCCAATCCCACGTCAATGTGACCCCCAGTCCTGTAGATCCTGCTGTTCCTGCAGTCCCTATAggtatgctatggtacatgtttacatcttaatgagaagatgtgggatggttt Alignment from CESAR gaCATGTCATGGTGAATGGCCCTACCACTCCAATCCCT-GTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAg actctggactcctggaagcagccgtcactgtgttttttgttgttttgcaggaCATGTTATGGTGAATGGCCCTACCACCCCAATCCCACGTCAATGTGACCCCCAGTCCTGTAGATCCTGCTGTTCCTGCAGTCCCTATAggtatgctatggtacatgtttacatcttaatgagaagatgtgggatggttt Alignment from Spaln_aa2Genome GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCT-GTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG actctggactcctggaagcagccgtcactgtgttttttgttgttttgcagGACATGTTATGGTGAATGGCCCTACCACCCCAATCCCAcGTCAATGTGACCCCCAGTCCTGTAGATCCTGCTGTTCCTGCAGTCCCTATAGgtatgctatggtacatgtttacatcttaatgagaagatgtgggatggttt Alignment from Spaln_nt2Genome GACATGTCATGGTGAATGGCCCTACCACTCCAAT-CCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG actctggactcctggaagcagccgtcactgtgttttttgttgttttgcagGACATGTTATGGTGAATGGCCCTACCACCCCAATCCCACGTCAATGTGACCCCCAGTCCTGTAGATCCTGCTGTTCCTGCAGTCCCTATAGgtatgctatggtacatgtttacatcttaatgagaagatgtgggatggttt Alignment from Pairagon GACATGTCATGGTGAATGGCCCTACCACTCCAATCCC-TGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG actctggactcctggaagcagccgtcactgtgttttttgttgttttgcagGACATGTTATGGTGAATGGCCCTACCACCCCAATCCCACGTCAATGTGACCCCCAGTCCTGTAGATCCTGCTGTTCCTGCAGTCCCTATAGgtatgctatggtacatgtttacatcttaatgagaagatgtgggatggttt Alignment from Exonerate_protein2genome GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCT-GTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG actctggactcctggaagcagccgtcactgtgttttttgttgttttgcagGACATGTTATGGTGAATGGCCCTACCACCCCAATCCCACGTCAATGTGACCCCCAGTCCTGTAGATCCTGCTGTTCCTGCAGTCCCTATAGgtatgctatggtacatgtttacatcttaatgagaagatgtgggatggttt Alignment from Exonerate_coding2genome GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCT-GTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG actctggactcctggaagcagccgtcactgtgttttttgttgttttgcagGACATGTTATGGTGAATGGCCCTACCACCCCAATCCCACGTCAATGTGACCCCCAGTCCTGTAGATCCTGCTGTTCCTGCAGTCCCTATAGgtatgctatggtacatgtttacatcttaatgagaagatgtgggatggttt Alignment from GeneWise GACATGTCATGGTGAATGGCCCTACCACTCCAATCCCT-GTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG actctggactcctggaagcagccgtcactgtgttttttgttgttttgcagGACATGTTATGGTGAATGGCCCTACCACCCCAATCCCACGTCAATGTGACCCCCAGTCCTGTAGATCCTGCTGTTCCTGCAGTCCCTATAGgtatgctatggtacatgtttacatcttaatgagaagatgtgggatggttt #### Pcx_ID565_14 --> 1 - 0 Original Alignment gTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTAC-TACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agagaattacaggagtcagaaacatatcaatacttcctgtgtacccacaggTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGGGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGGGTATGAAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACTGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCGCTGGAGTACCTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATCTTGTGCATTAAGgtaaatgggccatacagtgtgtctctcttgatcataattctttccctatc Alignment from CESAR gTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTAC-TACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agagaattacaggagtcagaaacatatcaatacttcctgtgtacccacaggTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGGGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGGGTATGAAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACTGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCGCTGGAGTACCTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATCTTGTGCATTAAGgtaaatgggccatacagtgtgtctctcttgatcataattcacttgtattt Alignment from Spaln_aa2Genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTAC-TACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agagaattacaggagtcagaaacatatcaatacttcctgtgtacccacagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGGGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGGGTATGAAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACTGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCGCTGGAGTACcTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATCTTGTGCATTAAGgtaaatgggccatacagtgtgtctctcttgatcataattctttccctatc Alignment from Spaln_nt2Genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTA-CTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agagaattacaggagtcagaaacatatcaatacttcctgtgtacccacagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGGGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGGGTATGAAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACTGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCGCTGGAGTACCTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATCTTGTGCATTAAGgtaaatgggccatacagtgtgtctctcttgatcataattctttccctatc Alignment from Pairagon GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTA-CTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agagaattacaggagtcagaaacatatcaatacttcctgtgtacccacagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGGGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGGGTATGAAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACTGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCGCTGGAGTACCTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATCTTGTGCATTAAGgtaaatgggccatacagtgtgtctctcttgatcataattctttccctatc Alignment from Exonerate_protein2genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTAC-TACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agagaattacaggagtcagaaacatatcaatacttcctgtgtacccacagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGGGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGGGTATGAAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACTGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCGCTGGAGTACCTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATCTTGTGCATTAAGgtaaatgggccatacagtgtgtctctcttgatcataattctttccctatc Alignment from Exonerate_coding2genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTAC-TACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agagaattacaggagtcagaaacatatcaatacttcctgtgtacccacagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGGGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGGGTATGAAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACTGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCGCTGGAGTACCTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATCTTGTGCATTAAGgtaaatgggccatacagtgtgtctctcttgatcataattctttccctatc Alignment from GeneWise GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTAC-TACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG agagaattacaggagtcagaaacatatcaatacttcctgtgtacccacagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGGGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGGGTATGAAAGCAGCGGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCCTACACTGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCGCTGGAGTACCTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATCTTGTGCATTAAGgtaaatgggccatacagtgtgtctctcttgatcataattctttccctatc #### Pcx_ID568_17 --> 0 - 0 Original Alignment GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGG-GCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ttacctctggtgcttgcctgacaaccctaactgggtgcttatggccctagGTGAAGTCATCCTCCAAGATTGTGGGAGACCTAGCTCAGTTCATGGTACAGAATGGGTCAAGCCGGCGCCGAGGCAGAAGCTCAGGCAGAAGAGCTTTCCTTCCCCTGTTCTGTAGTGGAGTTCCTACAGGGCTATATTGGCATCCCACATGGAGGTTTCCCTAAGCCATTTCATTCTAAAgtgagttaggtccatcatggtggaaacagagcttagccttccttccctct Alignment from CESAR GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGG-GCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ttacctctggtgcttgcctgacaaccctaactgggtgcttatggccctagGTGAAGTCATCCTCCAAGATTGTGGGAGACCTAGCTCAGTTCATGGTACAGAATGGGTCAAGCCGGCGCCGAGGCAGAAGCTCAGGCAGAAGAGCTTTCCTTCCCCTGTTCTGTAGTGGAGTTCCTACAGGGCTATATTGGCATCCCACATGGAGGTTTCCCTAAGCCATTTCATTCTAAAgtgagttaggtccatcatggtggaaacagagcttagtatctttgtcttcc Alignment from Spaln_aa2Genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGG-GCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ttacctctggtgcttgcctgacaaccctaactgggtgcttatggccctagGTGAAGTCATCCTCCAAGATTGTGGGAGACCTAGCTCAGTTCATGGTACAGAATGGGTCAAGCCGGcGCCGAGGCAGAAGCTCAGGCAGAAGAGCTTTCCTTCCCCTGTTCTGTAGTGGAGTTCCTACAGGGCTATATTGGCATCCCACATGGAGGTTTCCCTAAGCCATTTCATTCTAAAgtgagttaggtccatcatggtggaaacagagcttagccttccttccctct Alignment from Spaln_nt2Genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGG-GCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ttacctctggtgcttgcctgacaaccctaactgggtgcttatggccctagGTGAAGTCATCCTCCAAGATTGTGGGAGACCTAGCTCAGTTCATGGTACAGAATGGGTCAAGCCGGCGCCGAGGCAGAAGCTCAGGCAGAAGAGCTTTCCTTCCCCTGTTCTGTAGTGGAGTTCCTACAGGGCTATATTGGCATCCCACATGGAGGTTTCCCTAAGCCATTTCATTCTAAAgtgagttaggtccatcatggtggaaacagagcttagccttccttccctct Alignment from Pairagon ---------------------------------------------------------CATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGG-GCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG TTACCTCTGGTGCTTGCCTGACAACCCTAACTGGGTGCTTATGGCCCTAGGTGAAGTCATCCTCCAAGATTGTGGGAGACCTAGCTCAGTTCATGGTACAGAATGGGTCAAGCCGGCGCCGAGGCAGAAGCTCAGGCAGAAGAGCTTTCCTTCCCCTGTTCTGTAGTGGAGTTCCTACAGGGCTATATTGGCATCCCACATGGAGGTTTCCCTAAGCCATTTCATTCTAAAgtgagttaggtccatcatggtggaaacagagcttagccttccttccctct Alignment from Exonerate_protein2genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGG-GCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ttacctctggtgcttgcctgacaaccctaactgggtgcttatggccctagGTGAAGTCATCCTCCAAGATTGTGGGAGACCTAGCTCAGTTCATGGTACAGAATGGGTCAAGCCGGCGCCGAGGCAGAAGCTCAGGCAGAAGAGCTTTCCTTCCCCTGTTCTGTAGTGGAGTTCCTACAGGGCTATATTGGCATCCCACATGGAGGTTTCCCTAAGCCATTTCATTCTAAAgtgagttaggtccatcatggtggaaacagagcttagccttccttccctct Alignment from Exonerate_coding2genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGG-GCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ttacctctggtgcttgcctgacaaccctaactgggtgcttatggccctagGTGAAGTCATCCTCCAAGATTGTGGGAGACCTAGCTCAGTTCATGGTACAGAATGGGTCAAGCCGGCGCCGAGGCAGAAGCTCAGGCAGAAGAGCTTTCCTTCCCCTGTTCTGTAGTGGAGTTCCTACAGGGCTATATTGGCATCCCACATGGAGGTTTCCCTAAGCCATTTCATTCTAAAgtgagttaggtccatcatggtggaaacagagcttagccttccttccctct Alignment from GeneWise GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGCAGAATGGGTTGAGCCGG-GCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ttacctctggtgcttgcctgacaaccctaactgggtgcttatggccctagGTGAAGTCATCCTCCAAGATTGTGGGAGACCTAGCTCAGTTCATGGTACAGAATGGGTCAAGCCGGCGCCGAGGCAGAAGCTCAGGCAGAAGAGCTTTCCTTCCCCTGTTCTGTAGTGGAGTTCCTACAGGGCTATATTGGCATCCCACATGGAGGTTTCCCTAAGCCATTTCATTCTAAAgtgagttaggtccatcatggtggaaacagagcttagccttccttccctct #### Pdcd11_ID10119_13 --> 0 - 0 Original Alignment GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGG-ATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcctgaaggcctactgccgcaaggaggtttattcctgtctcttactgcagGTGGTAAAGGTGGCTGTGCTGAGCTGTGAGCCTTCCAAGGAAAGGCATGCTCCTCTCCTTCAGGTTGCTGAGTGACTCACGGCCAAAAGATCCAGGTGTTGAGAGCAGTCAGAAGAAAACAGAAGCTGTGCGCATTGGGCAAgtgagtaggcaatgacttcatctaatggtgacagtgtttgcagaggaagg Alignment from CESAR GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGG-ATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcctgaaggcctactgccgcaaggaggtttattcctgtctcttactgcagGTGGTAAAGGTGGCTGTGCTGAGCTGTGAGCCTTCCAAGGAAAGGCATGCTCCTCTCCTTCAGGTTGCTGAGTGACTCACGGCCAAAAGATCCAGGTGTTGAGAGCAGTCAGAAGAAAACAGAAGCTGTGCGCATTGGGCAAgtgagtaggcaatgacttcatctaatggtgacagtgtttgcagaggaagg Alignment from Spaln_aa2Genome GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGG-ATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcctgaaggcctactgccgcaaggaggtttattcctgtctcttactgcagGTGGTAAAGGTGGCTGTGCTGAGCTGTGAGCCTTCCAAGGAAAGGcATGCTCCTCTCCTTCAGGTTGCTGAGTGACTCACGGCCAAAAGATCCAGGTGTTGAGAGCAGTCAGAAGAAAACAGAAGCTGTGCGCATTGGGCAAgtgagtaggcaatgacttcatctaatggtgacagtgtttgcagaggaagg Alignment from Spaln_nt2Genome GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGG-ATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcctgaaggcctactgccgcaaggaggtttattcctgtctcttactgcagGTGGTAAAGGTGGCTGTGCTGAGCTGTGAGCCTTCCAAGGAAAGGCATGCTCCTCTCCTTCAGGTTGCTGAGTGACTCACGGCCAAAAGATCCAGGTGTTGAGAGCAGTCAGAAGAAAACAGAAGCTGTGCGCATTGGGCAAgtgagtaggcaatgacttcatctaatggtgacagtgtttgcagaggaagg Alignment from Pairagon GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGG-ATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcctgaaggcctactgccgcaaggaggtttattcctgtctcttactgcagGTGGTAAAGGTGGCTGTGCTGAGCTGTGAGCCTTCCAAGGAAAGGCATGCTCCTCTCCTTCAGGTTGCTGAGTGACTCACGGCCAAAAGATCCAGGTGTTGAGAGCAGTCAGAAGAAAACAGAAGCTGTGCGCATTGGGCAAgtgagtaggcaatgacttcatctaatggtgacagtgtttgcagaggaagg Alignment from Exonerate_protein2genome GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGG-ATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcctgaaggcctactgccgcaaggaggtttattcctgtctcttactgcagGTGGTAAAGGTGGCTGTGCTGAGCTGTGAGCCTTCCAAGGAAAGGCATGCTCCTCTCCTTCAGGTTGCTGAGTGACTCACGGCCAAAAGATCCAGGTGTTGAGAGCAGTCAGAAGAAAACAGAAGCTGTGCGCATTGGGCAAgtgagtaggcaatgacttcatctaatggtgacagtgtttgcagaggaagg Alignment from Exonerate_coding2genome GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAGAGG-ATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcctgaaggcctactgccgcaaggaggtttattcctgtctcttactgcagGTGGTAAAGGTGGCTGTGCTGAGCTGTGAGCCTTCCAAGGAAAGGCATGCTCCTCTCCTTCAGGTTGCTGAGTGACTCACGGCCAAAAGATCCAGGTGTTGAGAGCAGTCAGAAGAAAACAGAAGCTGTGCGCATTGGGCAAgtgagtaggcaatgacttcatctaatggtgacagtgtttgcagaggaagg Alignment from GeneWise GTGGTAAAGGTGGCAGTGCTGAGCTGTGAGCCTTCCAAGGAG-AGGATGCTCCTGTCCTTCAGACTGTTGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAG tcctgaaggcctactgccgcaaggaggtttattcctgtctcttactgcagGTGGTAAAGGTGGCTGTGCTGAGCTGTGAGCCTTCCAAGGAAAGGCATGCTCCTCTCCTTCAGGTTGCTGAGTGACTCACGGCCAAAAGATCCAGGTGTTGAGAGCAGTCAGAAGAAAACAGAAGCTGTGCGCATTGGGCAAgtgagtaggcaatgacttcatctaatggtgacagtgtttgcagaggaagg #### Pdcd11_ID10134_28 --> 1 - 0 Original Alignment cGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGG-AGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG tggtgtgcagacaccttctgccccatctccccattctttatcccttgtagcATCAATCCCATGAAGAACCTGATAGAGCTGTCCCTCCTTCCCAGTGACACTGGGCAGGCCGGATGTTTCCTCTCCTGCTCCAGAACCAAAACAAGAGGAAGGGAGCGGAGGGGCTGAGGGGGGCCAAAAAAAGAAGGAGAAGAACCAGAAGAGACGGGATGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgtgtaccactccccaggcagtatgtattgcctcatctcacccattagt Alignment from CESAR cGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGG-AGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG tggtgtgcagacaccttctgccccatctccccattctttatcccttgtagcATCAATCCCATGAAGAACCTGATAGAGCTGTCCCTCCTTCCCAGTGACACTGGGCAGGCCGGATGTTTCCTCTCCTGCTCCAGAACCAAAACAAGAGGAAGGGAGCGGAGGGGCTGAGGGGGGCCAAAAAAAGAAGGAGAAGAACCAGAAGAGACGGGATGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgtgtaccactccccaggcagtatgtattgcctcatctcacccattagt Alignment from Spaln_aa2Genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACT-GGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG tggtgtgcagacaccttctgccccatctccccattctttatcccttgtagCATCAATCCCATGAAGAACCTGATAGAGCTGTCCCTCCTTCCCAGTGACACTgGGCAGGCCGGATGTTTCCTCTCCTGCTCCAGAACCAAAACAAGAGGAAGGGAGCGGAGGGGCTGAGGGGGGCCAAAAAAAGAAGGAGAAGAACCAGAAGAGACGGGATGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgtgtaccactccccaggcagtatgtattgcctcatctcacccattagt Alignment from Spaln_nt2Genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGG-AGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG tggtgtgcagacaccttctgccccatctccccattctttatcccttgtagCATCAATCCCATGAAGAACCTGATAGAGCTGTCCCTCCTTCCCAGTGACACTGGGCAGGCCGGATGTTTCCTCTCCTGCTCCAGAACCAAAACAAGAGGAAGGGAGCGGAGGGGCTGAGGGGGGCCAAAAAAAGAAGGAGAAGAACCAGAAGAGACGGGATGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgtgtaccactccccaggcagtatgtattgcctcatctcacccattagt Alignment from Pairagon CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGG-AGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG tggtgtgcagacaccttctgccccatctccccattctttatcccttgtagCATCAATCCCATGAAGAACCTGATAGAGCTGTCCCTCCTTCCCAGTGACACTGGGCAGGCCGGATGTTTCCTCTCCTGCTCCAGAACCAAAACAAGAGGAAGGGAGCGGAGGGGCTGAGGGGGGCCAAAAAAAGAAGGAGAAGAACCAGAAGAGACGGGATGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgtgtaccactccccaggcagtatgtattgcctcatctcacccattagt Alignment from Exonerate_protein2genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACT-GGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG tggtgtgcagacaccttctgccccatctccccattctttatcccttgtagCATCAATCCCATGAAGAACCTGATAGAGCTGTCCCTCCTTCCCAGTGACACTGGGCAGGCCGGATGTTTCCTCTCCTGCTCCAGAACCAAAACAAGAGGAAGGGAGCGGAGGGGCTGAGGGGGGCCAAAAAAAGAAGGAGAAGAACCAGAAGAGACGGGATGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgtgtaccactccccaggcagtatgtattgcctcatctcacccattagt Alignment from Exonerate_coding2genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACT-GGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG tggtgtgcagacaccttctgccccatctccccattctttatcccttgtagCATCAATCCCATGAAGAACCTGATAGAGCTGTCCCTCCTTCCCAGTGACACTGGGCAGGCCGGATGTTTCCTCTCCTGCTCCAGAACCAAAACAAGAGGAAGGGAGCGGAGGGGCTGAGGGGGGCCAAAAAAAGAAGGAGAAGAACCAGAAGAGACGGGATGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgtgtaccactccccaggcagtatgtattgcctcatctcacccattagt Alignment from GeneWise CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGAC-ACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG tggtgtgcagacaccttctgccccatctccccattctttatcccttgtagCATCAATCCCATGAAGAACCTGATAGAGCTGTCCCTCCTTCCCAGTGACACTGGGCAGGCCGGATGTTTCCTCTCCTGCTCCAGAACCAAAACAAGAGGAAGGGAGCGGAGGGGCTGAGGGGGGCCAAAAAAAGAAGGAGAAGAACCAGAAGAGACGGGATGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgtgtaccactccccaggcagtatgtattgcctcatctcacccattagt #### Pdcd11_ID10135_29 --> 0 - 0 Original Alignment GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCA-GAAGAAGACGACAGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctaagggtgaggggaaaccccccagatgtgtgtctgtgttttccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCACGAGGAGGATGATAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCAAAGCTGCCGCCCAGGgtaagtttcactgggtgtgtactgggggatagctttggtgaagagctcct Alignment from CESAR GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCA-GAAGAAGACGACAGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctaagggtgaggggaaaccccccagatgtgtgtctgtgttttccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCACGAGGAGGATGATAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCAAAGCTGCCGCCCAGGgtaagtttcactgggtgtgtactgggggatagctttggtgaagagctcct Alignment from Spaln_aa2Genome GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCA-GAAGAAGACGACAGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctaagggtgaggggaaaccccccagatgtgtgtctgtgttttccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAcGAGGAGGATGATAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCAAAGCTGCCGCCCAGGgtaagtttcactgggtgtgtactgggggatagctttggtgaagagctcct Alignment from Spaln_nt2Genome GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCA-GAAGAAGACGACAGTGGTGTGGAAG------TGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctaagggtgaggggaaaccccccagatgtgtgtctgtgttttccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCACGAGGAGGATGATAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCAAAGCTGCCGCCCAGGgtaagtttcactgggtgtgtactgggggatagctttggtgaagagctcct Alignment from Pairagon GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCA-GAAGAAGACGACAGTGGTGTGGA------AGTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctaagggtgaggggaaaccccccagatgtgtgtctgtgttttccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCACGAGGAGGATGATAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCAAAGCTGCCGCCCAGGgtaagtttcactgggtgtgtactgggggatagctttggtgaagagctcct Alignment from Exonerate_protein2genome GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCA-GAAGAAGACGACAGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctaagggtgaggggaaaccccccagatgtgtgtctgtgttttccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCACGAGGAGGATGATAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCAAAGCTGCCGCCCAGGgtaagtttcactgggtgtgtactgggggatagctttggtgaagagctcct Alignment from Exonerate_coding2genome GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCA-GAAGAAGACGACAGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctaagggtgaggggaaaccccccagatgtgtgtctgtgttttccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCACGAGGAGGATGATAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCAAAGCTGCCGCCCAGGgtaagtttcactgggtgtgtactgggggatagctttggtgaagagctcct Alignment from GeneWise GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCC-GCAGAAGAAGACGACAGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCGAAGCTGCCACCCAGG tgctctaagggtgaggggaaaccccccagatgtgtgtctgtgttttccagGACCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCACGAGGAGGATGATAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGATGAGGTGGGGGAGCCAAAGCTGCCGCCCAGGgtaagtttcactgggtgtgtactgggggatagctttggtgaagagctcct #### Pdcd11_ID10137_31 --> 0 - 2 Original Alignment AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAG-AAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCag ctcatttcactcaaaggagatggaactccttacagtgagctctgttccagAAGAAGAAAGGTAAGAAGGAGAGGGAGCTGGAGAAGCAGCAAGGCAGAGAAAGAGCTGTCACGCATTGAAGAGGCACTGATGGACCCTGGGCGACAGCCAGAGTCTGCTGATGATTTTGACCGGCTGGTGCTAAGTTCTCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCGTTCCATCTGCAAACTACAGAGATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCTCATTCcggtaggcactctgacattccagcagtccagatgagtaatttgttataagct Alignment from CESAR AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAG-AAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCag ctcatttcactcaaaggagatggaactccttacagtgagctctgttccagAAGAAGAAAGGTAAGAAGGAGAGGGAGCTGGAGAAGCAGCAAGGCAGAGAAAGAGCTGTCACGCATTGAAGAGGCACTGATGGACCCTGGGCGACAGCCAGAGTCTGCTGATGATTTTGACCGGCTGGTGCTAAGTTCTCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCGTTCCATCTGCAAACTACAGAGATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCTCATTCcggtaggcactctgacattccagcagtccagatgagtaatttgttataagct Alignment from Spaln_aa2Genome AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAG-AAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG ctcatttcactcaaaggagatggaactccttacagtgagctctgttccagAAGAAGAAAGGTAAGAAGGAGAGGGAGCTGGAGAAGCAGcAAGGCAGAGAAAGAGCTGTCACGCATTGAAGAGGCACTGATGGACCCTGGGCGACAGCCAGAGTCTGCTGATGATTTTGACCGGCTGGTGCTAAGTTCTCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCGTTCCATCTGCAAACTACAGAGATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCTCATTCCGgtaggcactctgacattccagcagtccagatgagtaatttgttataagct Alignment from Spaln_nt2Genome AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAG-AAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG ctcatttcactcaaaggagatggaactccttacagtgagctctgttccagAAGAAGAAAGGTAAGAAGGAGAGGGAGCTGGAGAAGCAGCAAGGCAGAGAAAGAGCTGTCACGCATTGAAGAGGCACTGATGGACCCTGGGCGACAGCCAGAGTCTGCTGATGATTTTGACCGGCTGGTGCTAAGTTCTCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCGTTCCATCTGCAAACTACAGAGATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCTCATTCCGgtaggcactctgacattccagcagtccagatgagtaatttgttataagct Alignment from Pairagon AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAG-AAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG ctcatttcactcaaaggagatggaactccttacagtgagctctgttccagAAGAAGAAAGGTAAGAAGGAGAGGGAGCTGGAGAAGCAGCAAGGCAGAGAAAGAGCTGTCACGCATTGAAGAGGCACTGATGGACCCTGGGCGACAGCCAGAGTCTGCTGATGATTTTGACCGGCTGGTGCTAAGTTCTCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCGTTCCATCTGCAAACTACAGAGATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCTCATTCCGgtaggcactctgacattccagcagtccagatgagtaatttgttataagct Alignment from Exonerate_protein2genome AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAG-AAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG ctcatttcactcaaaggagatggaactccttacagtgagctctgttccagAAGAAGAAAGGTAAGAAGGAGAGGGAGCTGGAGAAGCAGCAAGGCAGAGAAAGAGCTGTCACGCATTGAAGAGGCACTGATGGACCCTGGGCGACAGCCAGAGTCTGCTGATGATTTTGACCGGCTGGTGCTAAGTTCTCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCGTTCCATCTGCAAACTACAGAGATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCTCATTCCGgtaggcactctgacattccagcagtccagatgagtaatttgttataagct Alignment from Exonerate_coding2genome AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAG-AAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG ctcatttcactcaaaggagatggaactccttacagtgagctctgttccagAAGAAGAAAGGTAAGAAGGAGAGGGAGCTGGAGAAGCAGCAAGGCAGAGAAAGAGCTGTCACGCATTGAAGAGGCACTGATGGACCCTGGGCGACAGCCAGAGTCTGCTGATGATTTTGACCGGCTGGTGCTAAGTTCTCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCGTTCCATCTGCAAACTACAGAGATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCTCATTCCGgtaggcactctgacattccagcagtccagatgagtaatttgttataagct Alignment from GeneWise AAGAAGAAGGGCAAGAAGGAGAGGGAGCTGGAGAAGCAG-AAGGCAGAGAAGGAGCTGTCGCGCATTGAGGAGGCACTCATGGACCCTGGGCGACAGCCAGAGTCTGCGGATGACTTTGACCGGCTGGTGCTAAGCTCTCCCAACAGCTCCATCCTTTGGCTGCAGTACATGGCTTTCCACCTACAGGCCACGGAGATCGAGAAGGCCCGGGCTGTGGCTGAGAGGGCCCTGAAGACCATCTCATTCAG ctcatttcactcaaaggagatggaactccttacagtgagctctgttccagAAGAAGAAAGGTAAGAAGGAGAGGGAGCTGGAGAAGCAGCAAGGCAGAGAAAGAGCTGTCACGCATTGAAGAGGCACTGATGGACCCTGGGCGACAGCCAGAGTCTGCTGATGATTTTGACCGGCTGGTGCTAAGTTCTCCTAACAGCTCCATCCTTTGGCTGCAGTACATGGCGTTCCATCTGCAAACTACAGAGATTGAAAGGGCCCGGGCTGTAGCTGAGAGGGCTTTGAAGACCATCTCATTCCGgtaggcactctgacattccagcagtccagatgagtaatttgttataagct #### Pdcd11_ID10139_33 --> 0 - 1 Original Alignment GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATC-AAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGG------GCCAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAc actttatcaacatagtgccacactccaatcttgtgtttttataattacagGAAGCTGGAGAGCTGTATAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGTATCCAAATATGGTTCCTTTGGTTTGGGAAGGAGCCAGGCTGGGGCTGGAGTCAGTCACCATGTCCTACAGCGAGCACCGGAGTGCTTGCCGGCCAAAGAAcgtcggatcttttgctggcacctgatcccacccaattcgatacatatctag Alignment from CESAR GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATC-AAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAc actttatcaacatagtgccacactccaatcttgtgtttttataattacagGAAGCTGGAGAGCTGTATAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGTATCCAAATATGGTTCCTTTGGTTTGGGAAGGAGCCAGGCTGGGGCTGGAGTCAGTCACCATGTCCTACAGCGAGCACCGGAGTGCTTGCCGGCCAAAGAAcgtcggatcttttgctggcacctgatcccacccaattcgatacatatctag Alignment from Spaln_aa2Genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATC-AAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC actttatcaacatagtgccacactccaatcttgtgtttttataattacagGAAGCTGGAGAGCTGTATAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGTATCcAAATATGGTTCCTTTGGTTTGGGAAGGAGCCAGGCTGGGGCTGGAGTCAGTCACCATGTCCTACAGCGAGCACCGGAGTGCTTGCCGGCCAAAGAACgtcggatcttttgctggcacctgatcccacccaattcgatacatatctag Alignment from Spaln_nt2Genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGAT-CAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGC------CAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC actttatcaacatagtgccacactccaatcttgtgtttttataattacagGAAGCTGGAGAGCTGTATAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGTATCCAAATATGGTTCCTTTGGTTTGGGAAGGAGCCAGGCTGGGGCTGGAGTCAGTCACCATGTCCTACAGCGAGCACCGGAGTGCTTGCCGGCCAAAGAACgtcggatcttttgctggcacctgatcccacccaattcgatacatatctag Alignment from Pairagon GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGAT-CAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGC------CAGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC actttatcaacatagtgccacactccaatcttgtgtttttataattacagGAAGCTGGAGAGCTGTATAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGTATCCAAATATGGTTCCTTTGGTTTGGGAAGGAGCCAGGCTGGGGCTGGAGTCAGTCACCATGTCCTACAGCGAGCACCGGAGTGCTTGCCGGCCAAAGAACgtcggatcttttgctggcacctgatcccacccaattcgatacatatctag Alignment from Exonerate_protein2genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATC-AAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC actttatcaacatagtgccacactccaatcttgtgtttttataattacagGAAGCTGGAGAGCTGTATAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGTATCCAAATATGGTTCCTTTGGTTTGGGAAGGAGCCAGGCTGGGGCTGGAGTCAGTCACCATGTCCTACAGCGAGCACCGGAGTGCTTGCCGGCCAAAGAACgtcggatcttttgctggcacctgatcccacccaattcgatacatatctag Alignment from Exonerate_coding2genome GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTCTGGATC-AAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC actttatcaacatagtgccacactccaatcttgtgtttttataattacagGAAGCTGGAGAGCTGTATAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGTATCCAAATATGGTTCCTTTGGTTTGGGAAGGAGCCAGGCTGGGGCTGGAGTCAGTCACCATGTCCTACAGCGAGCACCGGAGTGCTTGCCGGCCAAAGAACgtcggatcttttgctggcacctgatcccacccaattcgatacatatctag Alignment from GeneWise GAAGCTGGTGAGCTGTACAACCGGATGCTGAAACGGTTCCGGCAGGAGAAGGCTGTC-TGGATCAAATATGGTGCCTTTGTTTTGGGGAGGAGTCAGGCTGGGGCC------AGTCACCGAGTGCTGCAGCGAGCCCTGGAGTGCCTGCCCGCCAAGGAAC actttatcaacatagtgccacactccaatcttgtgtttttataattacagGAAGCTGGAGAGCTGTATAACCGGATGATCAAACGGTTCCGGCAGGAGAAGGCTGTCTGTATCCAAATATGGTTCCTTTGGTTTGGGAAGGAGCCAGGCTGGGGCTGGAGTCAGTCACCATGTCCTACAGCGAGCACCGGAGTGCTTGCCGGCCAAAGAACgtcggatcttttgctggcacctgatcccacccaattcgatacatatctag #### Pdcd4_ID11402_9 --> 0 - 0 Original Alignment GCCATTGTAATGGTTTTAGAGTCAACT-GGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA gatgagttgtttaccaaaggttgattcactttatgttttactttccatagGCCATTGTGATGGTGTTAGAGTCAACTCGGGGAGAGTGCATTTAAGATGATCTTAGATTTATTTAAATCTCTATGGAAGTCTTCTACAATCACTATAGACCAAATGAAACGAgtaatcgttattctctagggagggatagttttattattaattaagatgtg Alignment from CESAR GCCATTGTAATGGTTTTAGAGTCAACT-GGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA gatgagttgtttaccaaaggttgattcactttatgttttactttccatagGCCATTGTGATGGTGTTAGAGTCAACTCGGGGAGAGTGCATTTAAGATGATCTTAGATTTATTTAAATCTCTATGGAAGTCTTCTACAATCACTATAGACCAAATGAAACGAgtaatcgttattctctagggagggatagttttattattaattaagatgtg Alignment from Spaln_aa2Genome GCCATTGTAATGGTTTTAGAGTCAACT-GGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA gatgagttgtttaccaaaggttgattcactttatgttttactttccatagGCCATTGTGATGGTGTTAGAGTCAACTcGGGGAGAGTGCATTTAAGATGATCTTAGATTTATTTAAATCTCTATGGAAGTCTTCTACAATCACTATAGACCAAATGAAACGAgtaatcgttattctctagggagggatagttttattattaattaagatgtg Alignment from Spaln_nt2Genome GCCATTGTAATGGTTTTAGAGTCAACT-GGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA gatgagttgtttaccaaaggttgattcactttatgttttactttccatagGCCATTGTGATGGTGTTAGAGTCAACTCGGGGAGAGTGCATTTAAGATGATCTTAGATTTATTTAAATCTCTATGGAAGTCTTCTACAATCACTATAGACCAAATGAAACGAgtaatcgttattctctagggagggatagttttattattaattaagatgtg Alignment from Pairagon GCCATTGTAATGGTTTTAGAGTCAACT-GGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA gatgagttgtttaccaaaggttgattcactttatgttttactttccatagGCCATTGTGATGGTGTTAGAGTCAACTCGGGGAGAGTGCATTTAAGATGATCTTAGATTTATTTAAATCTCTATGGAAGTCTTCTACAATCACTATAGACCAAATGAAACGAgtaatcgttattctctagggagggatagttttattattaattaagatgtg Alignment from Exonerate_protein2genome GCCATTGTAATGGTTTTAGAGTCAACT-GGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA gatgagttgtttaccaaaggttgattcactttatgttttactttccatagGCCATTGTGATGGTGTTAGAGTCAACTCGGGGAGAGTGCATTTAAGATGATCTTAGATTTATTTAAATCTCTATGGAAGTCTTCTACAATCACTATAGACCAAATGAAACGAgtaatcgttattctctagggagggatagttttattattaattaagatgtg Alignment from Exonerate_coding2genome GCCATTGTAATGGTTTTAGAGTCAACT-GGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA gatgagttgtttaccaaaggttgattcactttatgttttactttccatagGCCATTGTGATGGTGTTAGAGTCAACTCGGGGAGAGTGCATTTAAGATGATCTTAGATTTATTTAAATCTCTATGGAAGTCTTCTACAATCACTATAGACCAAATGAAACGAgtaatcgttattctctagggagggatagttttattattaattaagatgtg Alignment from GeneWise GCCATTGTAATGGTTTTAGAGTCA-ACTGGAGAAAGTGCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA gatgagttgtttaccaaaggttgattcactttatgttttactttccatagGCCATTGTGATGGTGTTAGAGTCAACTCGGGGAGAGTGCATTTAAGATGATCTTAGATTTATTTAAATCTCTATGGAAGTCTTCTACAATCACTATAGACCAAATGAAACGAgtaatcgttattctctagggagggatagttttattattaattaagatgtg #### Peo1_ID9266_3 --> 1 - 2 Original Alignment gTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAG-CAGCTCTCCTCTGACag ttcctcaatagtgtcccgatagtactaaccccccccttttttttttctaggTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTATGACATCTGCCATGTAGTCATTGACAACTTGCAATTCATGATGGGTCATGAGCCAGCTCTCCTCTGACaggtaagctgatgaattcatgggtctgactgacagatgttggctcactttaa Alignment from CESAR gTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAG-CAGCTCTCCTCTGACag ttcctcaatagtgtcccgatagtactaaccccccccttttttttttctaggTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTATGACATCTGCCATGTAGTCATTGACAACTTGCAATTCATGATGGGTCATGAGCCAGCTCTCCTCTGACaggtaagctgatgaattcatgggtctgactgacagatgttggctcactttaa Alignment from Spaln_aa2Genome GTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAG-CAGCTCTCCTCTGACAG ttcctcaatagtgtcccgatagtactaaccccccccttttttttttctagGTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTATGACATCTGCCATGTAGTCATTGACAACTTGCAATTCATGATGGGTCATGAGcCAGCTCTCCTCTGACAGgtaagctgatgaattcatgggtctgactgacagatgttggctcactttaa Alignment from Spaln_nt2Genome GTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAG-CAGCTCTCCTCTGACAG ttcctcaatagtgtcccgatagtactaaccccccccttttttttttctagGTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTATGACATCTGCCATGTAGTCATTGACAACTTGCAATTCATGATGGGTCATGAGCCAGCTCTCCTCTGACAGgtaagctgatgaattcatgggtctgactgacagatgttggctcactttaa Alignment from Pairagon GTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAG-CAGCTCTCCTCTGACAG ttcctcaatagtgtcccgatagtactaaccccccccttttttttttctagGTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTATGACATCTGCCATGTAGTCATTGACAACTTGCAATTCATGATGGGTCATGAGCCAGCTCTCCTCTGACAGgtaagctgatgaattcatgggtctgactgacagatgttggctcactttaa Alignment from Exonerate_protein2genome GTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAG-CAGCTCTCCTCTGACAG ttcctcaatagtgtcccgatagtactaaccccccccttttttttttctagGTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTATGACATCTGCCATGTAGTCATTGACAACTTGCAATTCATGATGGGTCATGAGCCAGCTCTCCTCTGACAGgtaagctgatgaattcatgggtctgactgacagatgttggctcactttaa Alignment from Exonerate_coding2genome GTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAG-CAGCTCTCCTCTGACAG ttcctcaatagtgtcccgatagtactaaccccccccttttttttttctagGTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTATGACATCTGCCATGTAGTCATTGACAACTTGCAATTCATGATGGGTCATGAGCCAGCTCTCCTCTGACAGgtaagctgatgaattcatgggtctgactgacagatgttggctcactttaa Alignment from GeneWise GTCCGTCATAGACACAATGCAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCAC-GAGCAGCTCTCCTCTGACAG ttcctcaatagtgtcccgatagtactaaccccccccttttttttttctagGTCTGTCATAGACACAATGCAACATGCAGTCTATGTCTATGACATCTGCCATGTAGTCATTGACAACTTGCAATTCATGATGGGTCATGAGCCAGCTCTCCTCTGACAGgtaagctgatgaattcatgggtctgactgacagatgttggctcactttaa #### Pga5_ID2970_8 --> 0 - 0 Original Alignment TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATT-GTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG tgggcagcctgctctgggcctcctgccaaccttctaccctttattgctagTACTTTCTAAAGTGCGAC---GTCAACTGCTTGCCTGATATTCGTCTTCCCCATT------GTTACATACCCAGTGCCAGCTAGTGCCTACATTCGAAAGgtgtgccaggtgggagtgggtgagcacctcatcttgctttggtttctatg Alignment from CESAR TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATT-GTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG tgggcagcctgctctgggcctcctgccaaccttctaccctttattgctagTACTTTCTAAAGTGCGAC---GTCAACTGCTTGCCTGATATTCGTCTTCCCCATT------GTTACATACCCAGTGCCAGCTAGTGCCTACATTCGAAAGgtgtgccaggtgggagtgggtgagcacctcatcttgctttggtttctatg Alignment from Spaln_aa2Genome TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATT-GTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG tgggcagcctgctctgggcctcctgccaaccttctaccctttattgctagTACTTTCTAAAGTGCGAC---GTCAACTGCTTGCCTGATATTcGTCTTCCCCATT------GTTACATACCCAGTGCCAGCTAGTGCCTACATTCGAAAGgtgtgccaggtgggagtgggtgagcacctcatcttgctttggtttctatg Alignment from Spaln_nt2Genome TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATT-GTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG tgggcagcctgctctgggcctcctgccaaccttctaccctttattgctagTACTTTCTAAAGTGCGA---CGTCAACTGCTTGCCTGATATTCGTCTTCCCCAT------TGTTACATACCCAGTGCCAGCTAGTGCCTACATTCGAAAGgtgtgccaggtgggagtgggtgagcacctcatcttgctttggtttctatg Alignment from Pairagon TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATT-GTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG tgggcagcctgctctgggcctcctgccaaccttctaccctttattgctagTACTTTCTAAAGTGCGA---CGTCAACTGCTTGCCTGATATTCGTCTTCCCCAT------TGTTACATACCCAGTGCCAGCTAGTGCCTACATTCGAAAGgtgtgccaggtgggagtgggtgagcacctcatcttgctttggtttctatg Alignment from Exonerate_protein2genome TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATT-GTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG tgggcagcctgctctgggcctcctgccaaccttctaccctttattgctagTACTTTCTAAAGTGCGAC---GTCAACTGCTTGCCTGATATTCGTCTTCCCCATT------GTTACATACCCAGTGCCAGCTAGTGCCTACATTCGAAAGgtgtgccaggtgggagtgggtgagcacctcatcttgctttggtttctatg Alignment from Exonerate_coding2genome TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATT-GTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG tgggcagcctgctctgggcctcctgccaaccttctaccctttattgctagTACTTTCTAAAGTGCGAC---GTCAACTGCTTGCCTGATATTCGTCTTCCCCATT------GTTACATACCCAGTGCCAGCTAGTGCCTACATTCGAAAGgtgtgccaggtgggagtgggtgagcacctcatcttgctttggtttctatg Alignment from GeneWise TACTTCCTCAAGTGTGACACCATCAACACCCTGCCTGATATT-GTCTTCACCATCGGCAGTGTTACCTACCCAGTGCCAGCCAGTGCCTACATCCGAAAG tgggcagcctgctctgggcctcctgccaaccttctaccctttattgctagTACTTTCTAAAGTGCGAC---GTCAACTGCTTGCCTGATATTCGTCTTCCCCATT------GTTACATACCCAGTGCCAGCTAGTGCCTACATTCGAAAGgtgtgccaggtgggagtgggtgagcacctcatcttgctttggtttctatg #### Pitpnm1_ID309_6 --> 2 - 1 Original Alignment gcGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATG-CAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATg gacagggcaccatcctgagcttccaaggctgagccagatctttcttgaaggtGGTGTATCTCCACAGAGCTTGTCTGAATGGCACATGCCAGAATGTTGCCCGAGACTCCAAAAACAGCTCTGAGGAAGAATTCTTTGATCCCCATggtaagtaagctagcttgtaaagacagattgtggagaatgctgctatgggc Alignment from CESAR gcGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATG-CAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATg gacagggcaccatcctgagcttccaaggctgagccagatctttcttgaaggtGGTGTATCTCCACAGAGCTTGTCTGAATGGCACATGCCAGAATGTTGCCCGAGACTCCAAAAACAGCTCTGAGGAAGAATTCTTTGATCCCCATggtaagtaagctagcttgtaaagacagattgtggagaatgctgctatgggc Alignment from Spaln_aa2Genome GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATG-CAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG gacagggcaccatcctgagcttccaaggctgagccagatctttcttgaagGTGGTGTATCTCCACAGAGCTTGTCTGAATGGCACATGcCAGAATGTTGCCCGAGACTCCAAAAACAGCTCTGAGGAAGAATTCTTTGATCCCCATGgtaagtaagctagcttgtaaagacagattgtggagaatgctgctatgggc Alignment from Spaln_nt2Genome GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATG-CAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG gacagggcaccatcctgagcttccaaggctgagccagatctttcttgaagGTGGTGTATCTCCACAGAGCTTGTCTGAATGGCACATGCCAGAATGTTGCCCGAGACTCCAAAAACAGCTCTGAGGAAGAATTCTTTGATCCCCATGgtaagtaagctagcttgtaaagacagattgtggagaatgctgctatgggc Alignment from Pairagon GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATG-CAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG gacagggcaccatcctgagcttccaaggctgagccagatctttcttgaagGTGGTGTATCTCCACAGAGCTTGTCTGAATGGCACATGCCAGAATGTTGCCCGAGACTCCAAAAACAGCTCTGAGGAAGAATTCTTTGATCCCCATGgtaagtaagctagcttgtaaagacagattgtggagaatgctgctatgggc Alignment from Exonerate_protein2genome GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATG-CAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG gacagggcaccatcctgagcttccaaggctgagccagatctttcttgaagGTGGTGTATCTCCACAGAGCTTGTCTGAATGGCACATGCCAGAATGTTGCCCGAGACTCCAAAAACAGCTCTGAGGAAGAATTCTTTGATCCCCATGgtaagtaagctagcttgtaaagacagattgtggagaatgctgctatgggc Alignment from Exonerate_coding2genome GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATG-CAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG gacagggcaccatcctgagcttccaaggctgagccagatctttcttgaagGTGGTGTATCTCCACAGAGCTTGTCTGAATGGCACATGCCAGAATGTTGCCCGAGACTCCAAAAACAGCTCTGAGGAAGAATTCTTTGATCCCCATGgtaagtaagctagcttgtaaagacagattgtggagaatgctgctatgggc Alignment from GeneWise -------------------------------------------------GGCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATG-CAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG GACAGGGCACCATCCTGAGCTTCCAAGGCTGAGCCAGATCTTTCTTGAAGGTGGTGTATCTCCACAGAGCTTGTCTGAATGGCACATGCCAGAATGTTGCCCGAGACTCCAAAAACAGCTCTGAGGAAGAATTCTTTGATCCCCATGgtaagtaagctagcttgtaaagacagattgtggagaatgctgctatgggc #### Pitpnm1_ID315_12 --> 0 - 2 Original Alignment AACAATGAGATGCTCTCCCCTGAAGTTGGT---CCAGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCT-GCTCAGCGTACCTTCAGTGACATGGCCAATCCT------GATCCTGATGGCTCTCAGAACag ccagatggggtaagaagaggtctcagattttttccccctctctctggcagATGAATGAGATACTCTCACCTGAAGTTGGTCGTCCAGTACGAGACCCACTGGCAGATGGGGTGGAGGTGCTGGGTCATGCTAGTCCAGAACCCTCAGCCCTACTTCGCTCAGTGTACCTTCAGCGACATGGCCAACCCTAACCCTGATCCTGATGGCTCACAAAATaggtaatgagttttcacagtagtcctagcacaaaaaccaaggttgacctcaa Alignment from CESAR AACAATGAGATGCTCTCCCCTGAAGTTGGT---CCAGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCT-GCTCAGCGTACCTTCAGTGACATGGCCAATCCT------GATCCTGATGGCTCTCAGAACag ccagatggggtaagaagaggtctcagattttttccccctctctctggcagATGAATGAGATACTCTCACCTGAAGTTGGTCGTCCAGTACGAGACCCACTGGCAGATGGGGTGGAGGTGCTGGGTCATGCTAGTCCAGAACCCTCAGCCCTACTTCGCTCAGTGTACCTTCAGCGACATGGCCAACCCTAACCCTGATCCTGATGGCTCACAAAATaggtaatgagttttcacagtagtcctagcacaaaaaccaaggttgacctcaa Alignment from Spaln_aa2Genome AACAATGAGATGCTCTCCCCTGAAGTTGGT---CCAGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCT-GCTCAGCGTACCTTCAGTGACATGGCCAAT------CCTGATCCTGATGGCTCTCAGAACAG ccagatggggtaagaagaggtctcagattttttccccctctctctggcagATGAATGAGATACTCTCACCTGAAGTTGGTCGTCCAGTACGAGACCCACTGGCAGATGGGGTGGAGGTGCTGGGTCATGCTAGTCCAGAACCCTCAGCCCTACTTcGCTCAGTGTACCTTCAGCGACATGGCCAACCCTAACCCTGATCCTGATGGCTCACAAAATAGgtaatgagttttcacagtagtcctagcacaaaaaccaaggttgacctcaa Alignment from Spaln_nt2Genome AACAATGAGATGCTCTCCCCTGAAGTTG---GTCCAGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCT-GCTCAGCGTACCTTCAGTGACATGGCCAATCCTGAT------CCTGATGGCTCTCAGAACAG ccagatggggtaagaagaggtctcagattttttccccctctctctggcagATGAATGAGATACTCTCACCTGAAGTTGGTCGTCCAGTACGAGACCCACTGGCAGATGGGGTGGAGGTGCTGGGTCATGCTAGTCCAGAACCCTCAGCCCTACTTCGCTCAGTGTACCTTCAGCGACATGGCCAACCCTAACCCTGATCCTGATGGCTCACAAAATAGgtaatgagttttcacagtagtcctagcacaaaaaccaaggttgacctcaa Alignment from Pairagon AACAATGAGATGCTCTCCCCTGAAGTTG---GTCCAGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCT-GCTCAGCGTACCTTCAGTGACATGGCC------AATCCTGATCCTGATGGCTCTCAGAACAG ccagatggggtaagaagaggtctcagattttttccccctctctctggcagATGAATGAGATACTCTCACCTGAAGTTGGTCGTCCAGTACGAGACCCACTGGCAGATGGGGTGGAGGTGCTGGGTCATGCTAGTCCAGAACCCTCAGCCCTACTTCGCTCAGTGTACCTTCAGCGACATGGCCAACCCTAACCCTGATCCTGATGGCTCACAAAATAGgtaatgagttttcacagtagtcctagcacaaaaaccaaggttgacctcaa Alignment from Exonerate_protein2genome AACAATGAGATGCTCTCCCCTGAAGTTGGT---CCAGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCT-GCTCAGCGTACCTTCAGTGACATGGCC------AATCCTGATCCTGATGGCTCTCAGAACAG ccagatggggtaagaagaggtctcagattttttccccctctctctggcagATGAATGAGATACTCTCACCTGAAGTTGGTCGTCCAGTACGAGACCCACTGGCAGATGGGGTGGAGGTGCTGGGTCATGCTAGTCCAGAACCCTCAGCCCTACTTCGCTCAGTGTACCTTCAGCGACATGGCCAACCCTAACCCTGATCCTGATGGCTCACAAAATAGgtaatgagttttcacagtagtcctagcacaaaaaccaaggttgacctcaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AACAATGAGATGCTCTCCCCTGAAGTTGGT---CCAGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTA-CCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCT------GATCCTGATGGCTCTCAGAACAG ccagatggggtaagaagaggtctcagattttttccccctctctctggcagATGAATGAGATACTCTCACCTGAAGTTGGTCGTCCAGTACGAGACCCACTGGCAGATGGGGTGGAGGTGCTGGGTCATGCTAGTCCAGAACCCTCAGCCCTACTTCGCTCAGTGTACCTTCAGCGACATGGCCAACCCTAACCCTGATCCTGATGGCTCACAAAATAGgtaatgagttttcacagtagtcctagcacaaaaaccaaggttgacctcaa #### Pitpnm1_ID321_18 --> 0 - 0 Original Alignment AACGTCACTTCCAACCACCGAGCGAGTGACACCGTG-GTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGC tcaactgaccctgctctctgtcttctgtctgtggtggatgtgtttttcagAATGTCACTTCCAACCACAGAGCAAGTGACACTGTGCGTATGTGAGGGCCGTCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCATTGGATGTAGTCACACTCACTGGAGAAGAGgtaattctcctcgatgcctttttagGTTGATGTCTATGTCATGACACAGC Alignment from CESAR AACGTCACTTCCAACCACCGAGCGAGTGACACCGTG-GTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGC tcaactgaccctgctctctgtcttctgtctgtggtggatgtgtttttcagAATGTCACTTCCAACCACAGAGCAAGTGACACTGTGCGTATGTGAGGGCCGTCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCATTGGATGTAGTCACACTCACTGGAGAAGAGgtcttggtaattgcaatttaactagGTTGATGTCTATGTCATGACACAGC Alignment from Spaln_aa2Genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTG-GTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG-------------------------GTGGATGTCTACGTCATGACACAGC tcaactgaccctgctctctgtcttctgtctgtggtggatgtgtttttcagAATGTCACTTCCAACCACAGAGCAAGTGACACTGTGcGTATGTGAGGGCCGTCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCATTGGATGTAGTCACACTCACTGGAGAAGAGGTAATTCTCCTCGATGCCTTTTTAgGTTGATGTCTATGTCATGACACAGC Alignment from Spaln_nt2Genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTG-GTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGA----------------GA---------AGGTGGATGTCTACGTCATGACACAGC tcaactgaccctgctctctgtcttctgtctgtggtggatgtgtttttcagAATGTCACTTCCAACCACAGAGCAAGTGACACTGTGCGTATGTGAGGGCCGTCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCATTGGATGTAGTCACACTCACTGGAGAAGAGGTAATTCTCCTCGATGCCTTTTTAGGTTGATGTCTATGTCATGACACAGC Alignment from Pairagon AACGTCACTTCCAACCACCGAGCGAGTGACACCGTG-GTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG-------------------------GTGGATGTCTACGTCATGACACAGC tcaactgaccctgctctctgtcttctgtctgtggtggatgtgtttttcagAATGTCACTTCCAACCACAGAGCAAGTGACACTGTGCGTATGTGAGGGCCGTCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCATTGGATGTAGTCACACTCACTGGAGAAGAGGTAATTCTCCTCGATGCCTTTTTAGGTTGATGTCTATGTCATGACACAGC Alignment from Exonerate_protein2genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTG-GTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGA tcaactgaccctgctctctgtcttctgtctgtggtggatgtgtttttcagAATGTCACTTCCAACCACAGAGCAAGTGACACTGTGCGTATGTGAGGGCCGTCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCATTGGATGTAGTCACACTCACTGGAGAAGAGgtaattctcctcgatgcctttttaggttgatGTC------TATGTCATGA Alignment from Exonerate_coding2genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTG-GTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGA tcaactgaccctgctctctgtcttctgtctgtggtggatgtgtttttcagAATGTCACTTCCAACCACAGAGCAAGTGACACTGTGCGTATGTGAGGGCCGTCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCATTGGATGTAGTCACACTCACTGGAGAAGAGgtaattctcctcgatgcctttttaggttgatGTC------TATGTCATGA Alignment from GeneWise AACGTCACTTCCAACCACCGAGCGAGTGACACCGTG-GTATGTGAGGGCCGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGC tcaactgaccctgctctctgtcttctgtctgtggtggatgtgtttttcagAATGTCACTTCCAACCACAGAGCAAGTGACACTGTGCGTATGTGAGGGCCGTCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCATTGGATGTAGTCACACTCACTGGAGAAGAGgtaattctcctcgatgcctttttagGTTGATGTCTATGTCATGACACAGC #### Pitpnm1_ID322_19 --> 0 - 2 Original Alignment TGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTG-CCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCag TGTAGTCACACTCACTGGAGAAGAGgtaagggtaattgcaatttaactagGTTGATGTCTATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGTTCTGGCCGTCTTACCTTCCCAGTGCTCATCAGAACATGCGCTGGGCATTGGTGTCTACCCTGTGCACATGGTGGTCaggtgaggaagtcagcaagtagctcagctcctgtgaaactggacactaccaa Alignment from CESAR TGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTG-CCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCag TGTAGTCACACTCACTGGAGAAGAGgtcttggtaattgcaatttaactagGTTGATGTCTATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGTTCTGGCCGTCTTACCTTCCCAGTGCTCATCAGAACATGCGCTGGGCATTGGTGTCTACCCTGTGCACATGGTGGTCaggtgaggaagtcagcaagtagctcagctcctgtgaaactggacactaccaa Alignment from Spaln_aa2Genome TGTGGTCACGCTCACTGGAGAGAAG-------------------------GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTG-CCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTAGTCACACTCACTGGAGAAGAGGTAAGGGTAATTGCAATTTAACTAgGTTGATGTCTATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGTTCTGGCCGTCTTACCTTCCCAGTGcTCATCAGAACATGCGCTGGGCATTGGTGTCTACCCTGTGCACATGGTGGTCAGgtgaggaagtcagcaagtagctcagctcctgtgaaactggacactaccaa Alignment from Spaln_nt2Genome TGTGGTCACGCTCACTGGAGA-GA------------------------AGGTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCC-TCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTAGTCACACTCACTGGAGAAGAGGTAAGGGTAATTGCAATTTAACTAGGTTGATGTCTATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGTTCTGGCCGTCTTACCTTCCCAGTGCTCATCAGAACATGCGCTGGGCATTGGTGTCTACCCTGTGCACATGGTGGTCAGgtgaggaagtcagcaagtagctcagctcctgtgaaactggacactaccaa Alignment from Pairagon TGTGGTCACGCTCACTGGAGAGAAGGTG-------------------------GATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCCC-TCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTAGTCACACTCACTGGAGAAGAGGTAAGGGTAATTGCAATTTAACTAGGTTGATGTCTATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGTTCTGGCCGTCTTACCTTCCCAGTGCTCATCAGAACATGCGCTGGGCATTGGTGTCTACCCTGTGCACATGGTGGTCAGgtgaggaagtcagcaagtagctcagctcctgtgaaactggacactaccaa Alignment from Exonerate_protein2genome TGTGGTCACGCTCACTGGAGAGAAGGTGGATGTC TGTAGTCACACTCACTGGAGAAGAGGTAAGGGTAattgcaatttaactaggttgatgtctatgtcatgacacagcctctgtcaggcaagtggatccactttggcacagaggtcactaacagttctggccgtcttaccttcccagtgctcatcagaacatgcgctgggcattggtgtctaccctgtgcacatggtggtcaggtgaggaagtcagcaagtagctcagctcctgtgaaactggacactaccaa Alignment from Exonerate_coding2genome TGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTGCC-CTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAGG TGTAGTCACACTCACTGGAGAAGAGgtaagggtaattgcaatttaactaggttgatGTCTATGT------CATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGTTCTGGCCGTCTTACCTTCCCAGTGCTCATCAGAACATGCGCTGGGCATTGGTGTCTACCCTGTGCACATGGTGGTCAG-gtgaggaagtcagcaagtagctcagctcctgtgaaactggacactacca Alignment from GeneWise TGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGCCACTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGCTCAGGCCGTCTCACCTTCCCAGTG-CCCTCAGAACGTGCACTGGGCATTGGTGTCTACCCTGTGCGCATGGTGGTCAG TGTAGTCACACTCACTGGAGAAGAGgtaagggtaattgcaatttaactagGTTGATGTCTATGTCATGACACAGCCTCTGTCAGGCAAGTGGATCCACTTTGGCACAGAGGTCACTAACAGTTCTGGCCGTCTTACCTTCCCAGTGCTCATCAGAACATGCGCTGGGCATTGGTGTCTACCCTGTGCACATGGTGGTCAGgtgaggaagtcagcaagtagctcagctcctgtgaaactggacactaccaa #### Pkd2l1_ID8958_10 --> 0 - 0 Original Alignment AACATGTTCCTGGCCATCATCAACGACACATACTCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTT-TCTGACTTCCTGAAACAG gaagagcggatagcttcagagattgctgactctcctccctcggtccctagAATATGTTCCTGGCCATTATCAATGACACATACTCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGCTGCAGCTTCTCTGACTTCCTGAAACAGgtaaaggccctagctctgcatagctgccatatagtatcctcagttttgga Alignment from CESAR AACATGTTCCTGGCCATCATCAACGACACATACTCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTT-TCTGACTTCCTGAAACAG gaagagcggatagcttcagagattgctgactctcctccctcggtccctagAATATGTTCCTGGCCATTATCAATGACACATACTCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGCTGCAGCTTCTCTGACTTCCTGAAACAGgtaaaggccctagctctgcatagctgccatatagtatcctcagttttgga Alignment from Spaln_aa2Genome AACATGTTCCTGGCCATCATCAACGACACATACTCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTT-TCTGACTTCCTGAAACAG gaagagcggatagcttcagagattgctgactctcctccctcggtccctagAATATGTTCCTGGCCATTATCAATGACACATACTCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGCTGCAGCTTcTCTGACTTCCTGAAACAGgtaaaggccctagctctgcatagctgccatatagtatcctcagttttgga Alignment from Spaln_nt2Genome AACATGTTCCTGGCCATCATCAACGACACATACTCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTT-TCTGACTTCCTGAAACAG gaagagcggatagcttcagagattgctgactctcctccctcggtccctagAATATGTTCCTGGCCATTATCAATGACACATACTCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGCTGCAGCTTCTCTGACTTCCTGAAACAGgtaaaggccctagctctgcatagctgccatatagtatcctcagttttgga Alignment from Pairagon AACATGTTCCTGGCCATCATCAACGACACATACTCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTT-TCTGACTTCCTGAAACAG gaagagcggatagcttcagagattgctgactctcctccctcggtccctagAATATGTTCCTGGCCATTATCAATGACACATACTCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGCTGCAGCTTCTCTGACTTCCTGAAACAGgtaaaggccctagctctgcatagctgccatatagtatcctcagttttgga Alignment from Exonerate_protein2genome AACATGTTCCTGGCCATCATCAACGACACATACTCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTT-TCTGACTTCCTGAAACAG gaagagcggatagcttcagagattgctgactctcctccctcggtccctagAATATGTTCCTGGCCATTATCAATGACACATACTCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGCTGCAGCTTCTCTGACTTCCTGAAACAGgtaaaggccctagctctgcatagctgccatatagtatcctcagttttgga Alignment from Exonerate_coding2genome AACATGTTCCTGGCCATCATCAACGACACATACTCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTT-TCTGACTTCCTGAAACAG gaagagcggatagcttcagagattgctgactctcctccctcggtccctagAATATGTTCCTGGCCATTATCAATGACACATACTCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGCTGCAGCTTCTCTGACTTCCTGAAACAGgtaaaggccctagctctgcatagctgccatatagtatcctcagttttgga Alignment from GeneWise AACATGTTCCTGGCCATCATCAACGACACATACTCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTT-TCTGACTTCCTGAAACAG gaagagcggatagcttcagagattgctgactctcctccctcggtccctagAATATGTTCCTGGCCATTATCAATGACACATACTCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGCTGCAGCTTCTCTGACTTCCTGAAACAGgtaaaggccctagctctgcatagctgccatatagtatcctcagttttgga #### Pkd2l1_ID8959_9 --> 1 - 0 Original Alignment tTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTC-GTCTTCTTCGTGCTCCTG ctcagatacatagcaggcttctgacagagttttgtcttatttgaatttagtTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCCGTCTTCTTCGTGCTCCTGgtaagtgtcacttagagggctggtggtctggaagacctttaaagtgtcgt Alignment from CESAR tTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTC-GTCTTCTTCGTGCTCCTG ctcagatacatagcaggcttctgacagagttttgtcttatttgaatttagtTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCCGTCTTCTTCGTGCTCCTGgtaagtgtcacttagagggctggtggtctggaagacctttaaagtgtcgt Alignment from Spaln_aa2Genome TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTC-GTCTTCTTCGTGCTCCTG ctcagatacatagcaggcttctgacagagttttgtcttatttgaatttagTTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCcGTCTTCTTCGTGCTCCTGgtaagtgtcacttagagggctggtggtctggaagacctttaaagtgtcgt Alignment from Spaln_nt2Genome TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTT-CGTCTTCTTCGTGCTCCTG ctcagatacatagcaggcttctgacagagttttgtcttatttgaatttagTTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCCGTCTTCTTCGTGCTCCTGgtaagtgtcacttagagggctggtggtctggaagacctttaaagtgtcgt Alignment from Pairagon TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTT-CGTCTTCTTCGTGCTCCTG ctcagatacatagcaggcttctgacagagttttgtcttatttgaatttagTTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCCGTCTTCTTCGTGCTCCTGgtaagtgtcacttagagggctggtggtctggaagacctttaaagtgtcgt Alignment from Exonerate_protein2genome TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTC-GTCTTCTTCGTGCTCCTG ctcagatacatagcaggcttctgacagagttttgtcttatttgaatttagTTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCCGTCTTCTTCGTGCTCCTGgtaagtgtcacttagagggctggtggtctggaagacctttaaagtgtcgt Alignment from Exonerate_coding2genome TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTC-GTCTTCTTCGTGCTCCTG ctcagatacatagcaggcttctgacagagttttgtcttatttgaatttagTTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCCGTCTTCTTCGTGCTCCTGgtaagtgtcacttagagggctggtggtctggaagacctttaaagtgtcgt Alignment from GeneWise TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAATGCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTC-GTCTTCTTCGTGCTCCTG ctcagatacatagcaggcttctgacagagttttgtcttatttgaatttagTTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATGCTAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCCGTCTTCTTCGTGCTCCTGgtaagtgtcacttagagggctggtggtctggaagacctttaaagtgtcgt #### Plcb3_ID1902_29 --> 1 - 0 Original Alignment gGAACTGACAGAGATTAATCGGCGGCACATC-ACTGAGTCGGTAAACTCCATCAGACGG gtcagtgggtgcagggaaatagcttagcctcattttgctttcttctctaggGAACTGACAGAGATTAATCGGCAACACATCCACTGAGTCTGTAAATTCCAACAGACGGgtacctgggtctcatctctctgtcaccaacaggagctaagctttactgtt Alignment from CESAR gGAACTGACAGAGATTAATCGGCGGCACATC-ACTGAGTCGGTAAACTCCATCAGACGG gtcagtgggtgcagggaaatagcttagcctcattttgctttcttctctaggGAACTGACAGAGATTAATCGGCAACACATCCACTGAGTCTGTAAATTCCAACAGACGGgtacctgggtctcatctctctgtcaccaacaggagctaagctttactgtt Alignment from Spaln_aa2Genome GGAACTGACAGAGATTAATCGGCGGCACATC-ACTGAGTCGGTAAACTCCATCAGACGG gtcagtgggtgcagggaaatagcttagcctcattttgctttcttctctagGGAACTGACAGAGATTAATCGGCAACACATCcACTGAGTCTGTAAATTCCAACAGACGGgtacctgggtctcatctctctgtcaccaacaggagctaagctttactgtt Alignment from Spaln_nt2Genome GGAACTGACAGAGATTAATCGGCGGCACAT-CACTGAGTCGGTAAACTCCATCAGACGG gtcagtgggtgcagggaaatagcttagcctcattttgctttcttctctagGGAACTGACAGAGATTAATCGGCAACACATCCACTGAGTCTGTAAATTCCAACAGACGGgtacctgggtctcatctctctgtcaccaacaggagctaagctttactgtt Alignment from Pairagon GGAACTGACAGAGATTAATCGGCGGCACAT-CACTGAGTCGGTAAACTCCATCAGACGG gtcagtgggtgcagggaaatagcttagcctcattttgctttcttctctagGGAACTGACAGAGATTAATCGGCAACACATCCACTGAGTCTGTAAATTCCAACAGACGGgtacctgggtctcatctctctgtcaccaacaggagctaagctttactgtt Alignment from Exonerate_protein2genome GGAACTGACAGAGATTAATCGGCGGCACATC-ACTGAGTCGGTAAACTCCATCAGACGG gtcagtgggtgcagggaaatagcttagcctcattttgctttcttctctagGGAACTGACAGAGATTAATCGGCAACACATCCACTGAGTCTGTAAATTCCAACAGACGGgtacctgggtctcatctctctgtcaccaacaggagctaagctttactgtt Alignment from Exonerate_coding2genome ATCACT GTCAGTgggtgcagggaaatagcttagcctcattttgctttcttctctagggaactgacagagattaatcggcaacacatccactgagtctgtaaattccaacagacgggtacctgggtctcatctctctgtcaccaacaggagctaagctttactgtt Alignment from GeneWise GGAACTGACAGAGATTAATCGGCGGCAC-ATCACTGAGTCGGTAAACTCCATCAGACGG gtcagtgggtgcagggaaatagcttagcctcattttgctttcttctctagGGAACTGACAGAGATTAATCGGCAACACATCCACTGAGTCTGTAAATTCCAACAGACGGgtacctgggtctcatctctctgtcaccaacaggagctaagctttactgtt #### Plcb3_ID1904_27 --> 0 - 2 Original Alignment GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACAC-ACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAag gctaacacatcagccccatatcacctgcaatcaaatgctctgttcgatagGCTCATCAGTGGGTCAAGGAAGTTGTCCTGGATACACACCACAACCCAATTCAAGAGGCTAAGGGAATTGAAAGAAaggttggtacagatagaaggtcagtgggactccctttacccaatgtctgagt Alignment from CESAR GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACAC-ACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAag gctaacacatcagccccatatcacctgcaatcaaatgctctgttcgatagGCTCATCAGTGGGTCAAGGAAGTTGTCCTGGATACACACCACAACCCAATTCAAGAGGCTAAGGGAATTGAAAGAAaggttggtacagatagaaggtcagtgggactccctttacccaatgtctgagt Alignment from Spaln_aa2Genome GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACAC-ACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG gctaacacatcagccccatatcacctgcaatcaaatgctctgttcgatagGCTCATCAGTGGGTCAAGGAAGTTGTCCTGGATACACACcACAACCCAATTCAAGAGGCTAAGGGAATTGAAAGAAAGgttggtacagatagaaggtcagtgggactccctttacccaatgtctgagt Alignment from Spaln_nt2Genome GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACAC-ACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG gctaacacatcagccccatatcacctgcaatcaaatgctctgttcgatagGCTCATCAGTGGGTCAAGGAAGTTGTCCTGGATACACACCACAACCCAATTCAAGAGGCTAAGGGAATTGAAAGAAAGgttggtacagatagaaggtcagtgggactccctttacccaatgtctgagt Alignment from Pairagon GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACA-CACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG gctaacacatcagccccatatcacctgcaatcaaatgctctgttcgatagGCTCATCAGTGGGTCAAGGAAGTTGTCCTGGATACACACCACAACCCAATTCAAGAGGCTAAGGGAATTGAAAGAAAGgttggtacagatagaaggtcagtgggactccctttacccaatgtctgagt Alignment from Exonerate_protein2genome GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACAC-ACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG gctaacacatcagccccatatcacctgcaatcaaatgctctgttcgatagGCTCATCAGTGGGTCAAGGAAGTTGTCCTGGATACACACCACAACCCAATTCAAGAGGCTAAGGGAATTGAAAGAAAGgttggtacagatagaaggtcagtgggactccctttacccaatgtctgagt Alignment from Exonerate_coding2genome GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACAC-ACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAG gctaacacatcagccccatatcacctgcaatcaaatgctctgttcgatagGCTCATCAGTGGGTCAAGGAAGTTGTCCTGGATACACACCACAACCCAATTCAAGAGGCTAAGGGAATTGAAAGAAAGgttggtacagatagaaggtcagtgggactccctttacccaatgtctgagt Alignment from GeneWise GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACAC-ACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAA---------------------------------------------------- gctaacacatcagccccatatcacctgcaatcaaatgctctgttcgatagGCTCATCAGTGGGTCAAGGAAGTTGTCCTGGATACACACCACAACCCAATTCAAGAGGCTAAGGGAATTGAAAGAAAGGTTGGTACAGATAGAAGGTCAGTGGGACTCCCTTTACCCAATGTCTGAGT #### Plcb3_ID1913_18 --> 2 - 0 Original Alignment atTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCC-TTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG tggtcctggatctatgatctctggctgcctccttctgttctcccacccagatTTGCCAATGCAGCTCAACGCAGGCGTGGTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTCTTCGCTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagggggcaagggttttggcatagggtgttttgaagaagatacaacag Alignment from CESAR atTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCC-TTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG tggtcctggatctatgatctctggctgcctccttctgttctcccacccagatTTGCCAATGCAGCTCAACGCAGGCGTGGTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTCTTCGCTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagggggcaagggttttggcatagggtgttttgaagaagatacaacag Alignment from Spaln_aa2Genome ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCC-TTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG tggtcctggatctatgatctctggctgcctccttctgttctcccacccagATTTGCCAATGCAGCTCAACGCAGGCGTGGTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTcTTCGCTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagggggcaagggttttggcatagggtgttttgaagaagatacaacag Alignment from Spaln_nt2Genome ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCC-CTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG tggtcctggatctatgatctctggctgcctccttctgttctcccacccagATTTGCCAATGCAGCTCAACGCAGGCGTGGTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTCTTCGCTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagggggcaagggttttggcatagggtgttttgaagaagatacaacag Alignment from Pairagon ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCC-CTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG tggtcctggatctatgatctctggctgcctccttctgttctcccacccagATTTGCCAATGCAGCTCAACGCAGGCGTGGTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTCTTCGCTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagggggcaagggttttggcatagggtgttttgaagaagatacaacag Alignment from Exonerate_protein2genome ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCC-TTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG tggtcctggatctatgatctctggctgcctccttctgttctcccacccagATTTGCCAATGCAGCTCAACGCAGGCGTGGTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTCTTCGCTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagggggcaagggttttggcatagggtgttttgaagaagatacaacag Alignment from Exonerate_coding2genome ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCC-TTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG tggtcctggatctatgatctctggctgcctccttctgttctcccacccagATTTGCCAATGCAGCTCAACGCAGGCGTGGTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTCTTCGCTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagggggcaagggttttggcatagggtgttttgaagaagatacaacag Alignment from GeneWise ATTTGCCAATGCAGCTCAACGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTC-ACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG tggtcctggatctatgatctctggctgcctccttctgttctcccacccagATTTGCCAATGCAGCTCAACGCAGGCGTGGTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTCTTCGCTGAGGTCATTGTAGATGGCATAGTGGCCAACGCGTTGCGGGTCAAGgtaagggggcaagggttttggcatagggtgttttgaagaagatacaacag #### Plcb3_ID1915_16 --> 2 - 2 Original Alignment aaAGGAACAAGTGCTTCGAGATGTCA-TCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGga cagggagatgggtctgccaggccatggcctctctctctggcctgtggcagaaAGGAACAAGTGCTTTAGGATGTCACTCCTTTGTGGAAACCAAAGCAATGGACCAACTGACCAAGAGCCCTATGGAGTTCGTGgagtgtgttcaccaataccatggctagtgcggggccaggagtcctacctcgt Alignment from CESAR aaAGGAACAAGTGCTTCGAGATGTCA-TCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGga cagggagatgggtctgccaggccatggcctctctctctggcctgtggcagaaAGGAACAAGTGCTTTAGGATGTCACTCCTTTGTGGAAACCAAAGCAATGGACCAACTGACCAAGAGCCCTATGGAGTTCGTGgagtgtgttcaccaataccatggctagtgcggggccaggagtcctacctcgt Alignment from Spaln_aa2Genome AAAGGAACAAGTGCTTCGAGATGTCA-TCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA cagggagatgggtctgccaggccatggcctctctctctggcctgtggcagAAAGGAACAAGTGCTTTAGGATGTCAcTCCTTTGTGGAAACCAAAGCAATGGACCAACTGACCAAGAGCCCTATGGAGTTCGTGGAgtgtgttcaccaataccatggctagtgcggggccaggagtcctacctcgt Alignment from Spaln_nt2Genome AAAGGAACAAGTGCTTCGAGATGTCA-TCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA cagggagatgggtctgccaggccatggcctctctctctggcctgtggcagAAAGGAACAAGTGCTTTAGGATGTCACTCCTTTGTGGAAACCAAAGCAATGGACCAACTGACCAAGAGCCCTATGGAGTTCGTGGAgtgtgttcaccaataccatggctagtgcggggccaggagtcctacctcgt Alignment from Pairagon AAAGGAACAAGTGCTTCGAGATGTCA-TCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA cagggagatgggtctgccaggccatggcctctctctctggcctgtggcagAAAGGAACAAGTGCTTTAGGATGTCACTCCTTTGTGGAAACCAAAGCAATGGACCAACTGACCAAGAGCCCTATGGAGTTCGTGGAgtgtgttcaccaataccatggctagtgcggggccaggagtcctacctcgt Alignment from Exonerate_protein2genome AAAGGAACAAGTGCTTCGAGATGTCA-TCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA cagggagatgggtctgccaggccatggcctctctctctggcctgtggcagAAAGGAACAAGTGCTTTAGGATGTCACTCCTTTGTGGAAACCAAAGCAATGGACCAACTGACCAAGAGCCCTATGGAGTTCGTGGAgtgtgttcaccaataccatggctagtgcggggccaggagtcctacctcgt Alignment from Exonerate_coding2genome AAAGGAACAAGTGCTTCGAGATGTCA-TCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA cagggagatgggtctgccaggccatggcctctctctctggcctgtggcagAAAGGAACAAGTGCTTTAGGATGTCACTCCTTTGTGGAAACCAAAGCAATGGACCAACTGACCAAGAGCCCTATGGAGTTCGTGGAgtgtgttcaccaataccatggctagtgcggggccaggagtcctacctcgt Alignment from GeneWise AAAGGAACAAGTGCTTCGAGATGTCA-TCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA cagggagatgggtctgccaggccatggcctctctctctggcctgtggcagAAAGGAACAAGTGCTTTAGGATGTCACTCCTTTGTGGAAACCAAAGCAATGGACCAACTGACCAAGAGCCCTATGGAGTTCGTGGAgtgtgttcaccaataccatggctagtgcggggccaggagtcctacctcgt #### Plcb3_ID1918_13 --> 0 - 1 Original Alignment CTATCTGCGGGCATCCCC-CTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTg ctttgcagctaggaatggtcagcatttctgctctcccgtctctgttgcagCTATCTGAGGGTATCCCGCCTGCCTAGTCCACAGGACCTCATG---GGTATTCTGGTGAAGAATCGGAAGCGACATCGGCCCCGCACAGGAGTCCCTGACAGTGCAGTACGCAAGCAGCCTCTGGAACTGAGCAACTTAGCACTGAGTGAGAGCTCTGCAGCCTCAGAGCCTTTATCACCTCAGCTTggtatgtgcaatgccctgtcttccactgctgaacctaatggtcagtgtatt Alignment from CESAR CTATCTGCGGGCATCCCC-CTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTg ctttgcagctaggaatggtcagcatttctgctctcccgtctctgttgcagCTATCTGAGGGTATCCCGCCTGCCTAGTCCACAGGACCTCATGGGT---ATTCTGGTGAAGAATCGGAAGCGACATCGGCCCCGCACAGGAGTCCCTGACAGTGCAGTACGCAAGCAGCCTCTGGAACTGAGCAACTTAGCACTGAGTGAGAGCTCTGCAGCCTCAGAGCCTTTATCACCTCAGCTTggtatgtgcaatgccctgtcttccactgctgaacctaatggtcagtgtatt Alignment from Spaln_aa2Genome CTATCTGCGGGCATCCCC-CTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG ctttgcagctaggaatggtcagcatttctgctctcccgtctctgttgcagCTATCTGAGGGTATCCCGcCTGCCTAGTCCACAGGACCTCATGGGT---ATTCTGGTGAAGAATCGGAAGCGACATCGGCCCCGCACAGGAGTCCCTGACAGTGCAGTACGCAAGCAGCCTCTGGAACTGAGCAACTTAGCACTGAGTGAGAGCTCTGCAGCCTCAGAGCCTTTATCACCTCAGCTTGgtatgtgcaatgccctgtcttccactgctgaacctaatggtcagtgtatt Alignment from Spaln_nt2Genome CTATCTGCGGGCATCCC-CCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG ctttgcagctaggaatggtcagcatttctgctctcccgtctctgttgcagCTATCTGAGGGTATCCCGCCTGCCTAGTCCACAGGACCTCATGG---GTATTCTGGTGAAGAATCGGAAGCGACATCGGCCCCGCACAGGAGTCCCTGACAGTGCAGTACGCAAGCAGCCTCTGGAACTGAGCAACTTAGCACTGAGTGAGAGCTCTGCAGCCTCAGAGCCTTTATCACCTCAGCTTGgtatgtgcaatgccctgtcttccactgctgaacctaatggtcagtgtatt Alignment from Pairagon CTATCTGCGGGCATCCC-CCTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG ctttgcagctaggaatggtcagcatttctgctctcccgtctctgttgcagCTATCTGAGGGTATCCCGCCTGCCTAGTCCACAGGACCTCATGG---GTATTCTGGTGAAGAATCGGAAGCGACATCGGCCCCGCACAGGAGTCCCTGACAGTGCAGTACGCAAGCAGCCTCTGGAACTGAGCAACTTAGCACTGAGTGAGAGCTCTGCAGCCTCAGAGCCTTTATCACCTCAGCTTGgtatgtgcaatgccctgtcttccactgctgaacctaatggtcagtgtatt Alignment from Exonerate_protein2genome CTATCTGCGGGCATCCCC-CTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG ctttgcagctaggaatggtcagcatttctgctctcccgtctctgttgcagCTATCTGAGGGTATCCCGCCTGCCTAGTCCACAGGACCTCATGGGT---ATTCTGGTGAAGAATCGGAAGCGACATCGGCCCCGCACAGGAGTCCCTGACAGTGCAGTACGCAAGCAGCCTCTGGAACTGAGCAACTTAGCACTGAGTGAGAGCTCTGCAGCCTCAGAGCCTTTATCACCTCAGCTTGgtatgtgcaatgccctgtcttccactgctgaacctaatggtcagtgtatt Alignment from Exonerate_coding2genome CTATCTGCGGGCATCCCC-CTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG ctttgcagctaggaatggtcagcatttctgctctcccgtctctgttgcagCTATCTGAGGGTATCCCGCCTGCCTAGTCCACAGGACCTCATGGGT---ATTCTGGTGAAGAATCGGAAGCGACATCGGCCCCGCACAGGAGTCCCTGACAGTGCAGTACGCAAGCAGCCTCTGGAACTGAGCAACTTAGCACTGAGTGAGAGCTCTGCAGCCTCAGAGCCTTTATCACCTCAGCTTGgtatgtgcaatgccctgtcttccactgctgaacctaatggtcagtgtatt Alignment from GeneWise ----------CTGCCTAGTCCACAGGACCTGATGGGCCGTATCCTGGTGAAGAATAAGAAGCGACATCGGCCCAGCACAGGTGTCCCTGACAGCTCAGTGCGCAAGCGGCCTCTGGAACAGAGCAACTCGGCCTTGAGTGAGAGCTCGGCCGCCACAGAGCCCTCCTCACCTCAGCTTG ctttgcagctaggaatggtcagcatttctgctctcccgtctctgttgcagctatctgagGGTATCCCGCCTGCCTAGTCCACAGGACCTCATGGGT---ATTCTGGTGAAGAATCGGAAGCGACATCGGCCCCGCACAGGAGTCCCTGACAGTGCAGTACGCAAGCAGCCTCTGGAACTGAGCAACTTAGCACTGAGTGAGAGCTCTGCAGCCTCAGAGCCTTTATCACCTCAGCTTGgtatgtgcaatgccctgtcttccactgctgaacctaatggtcagtgtatt #### Plcb3_ID1922_9 --> 1 - 1 Original Alignment aGGTGCCAAGGGCAAG-CCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAAC------CAGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCg cacatcttgtggttaccaccaggggagtggacttctgtcctctctctcagaGGCATGAAGGGCAAGCCCATACCTT---CTTGAGCAGCTGATGGACTTTGTCAACCAACAAGAGAAGCAGAGAGACCCAAGATTG---------------------------TCCTCACAAGCCCGTCTACTTATTGAGAAGTATGAGACAAACAAACAGTTCCTGGAGCGTggtaaattcctataggcaaaatggcagtgtgggtgggacccacctagccca Alignment from CESAR aGGTGCCAAGGGCAAG-CCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCAG------AAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCg cacatcttgtggttaccaccaggggagtggacttctgtcctctctctcagaGGCATGAAGGGCAAGCCCATACCTT---CTTGAGCAGCTGATGGACTTTGTCAACCAACAAGAGAAGCAGAGAGACCCAAGATTG---------------------------TCCTCACAAGCCCGTCTACTTATTGAGAAGTATGAGACAAACAAACAGTTCCTGGAGCGTggtaaattcctataggcaaaatggcagtgtgggtgggacccacctagccca Alignment from Spaln_aa2Genome AGGTGCCAAGGGCAAG-CCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCAG------AAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG cacatcttgtggttaccaccaggggagtggacttctgtcctctctctcagAGGCATGAAGGGCAAGcCCATACCTT---CTTGAGCAGCTGATGGACTTTGTCAACCAACAAGAGAAGCAGAGAGACCCAAGATTG---------------------------TCCTCACAAGCCCGTCTACTTATTGAGAAGTATGAGACAAACAAACAGTTCCTGGAGCGTGgtaaattcctataggcaaaatggcagtgtgggtgggacccacctagccca Alignment from Spaln_nt2Genome AGGTGCCAAGGGCAAGCCG-TACCTCACTCTGGAGCAGCTCATGGACTTTATCAACC------AGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG cacatcttgtggttaccaccaggggagtggacttctgtcctctctctcagAGGCATGAAGGGCAAGCCCATACCT---TCTTGAGCAGCTGATGGACTTTGTCAACCAACAAGAGAAGCAGAGAGACCCAAGATT---------------------------GTCCTCACAAGCCCGTCTACTTATTGAGAAGTATGAGACAAACAAACAGTTCCTGGAGCGTGgtaaattcctataggcaaaatggcagtgtgggtgggacccacctagccca Alignment from Pairagon AGGTGCCAAGGGCAAG-CCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACC------AGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG cacatcttgtggttaccaccaggggagtggacttctgtcctctctctcagAGGCATGAAGGGCAAGCCCATACCT---TCTTGAGCAGCTGATGGACTTTGTCAACCAACAAGAGAAGCAGAGAGACCCAAGATT---------------------------GTCCTCACAAGCCCGTCTACTTATTGAGAAGTATGAGACAAACAAACAGTTCCTGGAGCGTGgtaaattcctataggcaaaatggcagtgtgggtgggacccacctagccca Alignment from Exonerate_protein2genome AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCAGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG cacatcttgtggttaccaccaggggagTGGACTTCTGTCCTCTCTCTCAGAGGCATGAAGGGCAAGCCCATACCTTCTTGAGCAGCTGATGGACTTTGTCAACCAACAAGAGAAGCAGAGAGACCCAAGATTGTCCTCACAAGCCCGTCTACTTATTGAGAAGTATGAGACAAACAAACAGTTCCTGGAGCGTGgtaaattcctataggcaaaatggcagtgtgggtgggacccacctagccca Alignment from Exonerate_coding2genome AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCAGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG cacatcttgtggttaccaccaggggagTGGACTTCTGTCCTCTCTCTCAGAGGCATGAAGGGCAAGCCCATACCTTCTTGAGCAGCTGATGGACTTTGTCAACCAACAAGAGAAGCAGAGAGACCCAAGATTGTCCTCACAAGCCCGTCTACTTATTGAGAAGTATGAGACAAACAAACAGTTCCTGGAGCGTGgtaaattcctataggcaaaatggcagtgtgggtgggacccacctagccca Alignment from GeneWise AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCAG------AAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG cacatcttgtggttaccaccaggggagtggacttctgtcctctctctcagaggcatgaagGGCAAGC---------CCATACCTT---CTTGAGCAGCTGATGGACTTTGTCAACCAACAAGAGAAGCAGAGAGACCCAAGATTG---------------------------TCCTCACAAGCCCGTCTACTTATTGAGAAGTATGAGACAAACAAACAGTTCCTGGAGCGTGgtaaattcctataggcaaaatggcagtgtgggtgggacccacctagccca #### Plcb3_ID1923_8 --> 1 - 2 Original Alignment tGAGTCCATTCGCCCTGATGAGTTTCCCTTG-GAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGat tttggaactggctgaccaagattctcacactttgtcctcttattatttagtGAATCCATTCGCCCTGATGAATTTCCCTTGCGAAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGACCAGATATTGACAAGATCCTGCTGGAGatgtgcgtaacttggaaatggattccatagggtggactctgtctccggtgca Alignment from CESAR tGAGTCCATTCGCCCTGATGAGTTTCCCTTG-GAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGat tttggaactggctgaccaagattctcacactttgtcctcttattatttagtGAATCCATTCGCCCTGATGAATTTCCCTTGCGAAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGACCAGATATTGACAAGATCCTGCTGGAGatgtgcgtaacttggaaatggattccatagggtggactctgtctccggtgca Alignment from Spaln_aa2Genome TGAGTCCATTCGCCCTGATGAGTTTCCCTTG-GAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGAT tttggaactggctgaccaagattctcacactttgtcctcttattatttagTGAATCCATTCGCCCTGATGAATTTCCCTTGcGAAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGACCAGATATTGACAAGATCCTGCTGGAGATgtgcgtaacttggaaatggattccatagggtggactctgtctccggtgca Alignment from Spaln_nt2Genome TGAGTCCATTCGCCCTGATGAGTTTCCCTTG-GAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGAT tttggaactggctgaccaagattctcacactttgtcctcttattatttagTGAATCCATTCGCCCTGATGAATTTCCCTTGCGAAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGACCAGATATTGACAAGATCCTGCTGGAGATgtgcgtaacttggaaatggattccatagggtggactctgtctccggtgca Alignment from Pairagon TGAGTCCATTCGCCCTGATGAGTTTCCCTTG-GAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGAT tttggaactggctgaccaagattctcacactttgtcctcttattatttagTGAATCCATTCGCCCTGATGAATTTCCCTTGCGAAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGACCAGATATTGACAAGATCCTGCTGGAGATgtgcgtaacttggaaatggattccatagggtggactctgtctccggtgca Alignment from Exonerate_protein2genome tttggaactggctgaccaagattctcacactttgtcctcttattatttagtgaatccattcgccctgatgaatttcccttgcgaagtttttgagcggttcttgaataaactgtgtctgcgaccagatattgacaagatcctgctggagatgtgcgtaacttggaaatggattccatagggtggactctgtctccggtgca Alignment from Exonerate_coding2genome tttggaactggctgaccaagattctcacactttgtcctcttattatttagtgaatccattcgccctgatgaatttcccttgcgaagtttttgagcggttcttgaataaactgtgtctgcgaccagatattgacaagatcctgctggagatgtgcgtaacttggaaatggattccatagggtggactctgtctccggtgca Alignment from GeneWise TGAGTCCATTCGCCCTGATGAGTTTCCC-TTGGAAATTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGAT tttggaactggctgaccaagattctcacactttgtcctcttattatttagTGAATCCATTCGCCCTGATGAATTTCCCTTGCGAAGTTTTTGAGCGGTTCTTGAATAAACTGTGTCTGCGACCAGATATTGACAAGATCCTGCTGGAGATgtgcgtaacttggaaatggattccatagggtggactctgtctccggtgca #### Plcb3_ID1926_5 --> 0 - 2 Original Alignment GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCTCAG-AACGCCTCCCGGAACACCTTCCTGCGGAAAgc gggttaacctccttgcccccttcgactatccttcttgttccccaccacagGTATGGTCAGAGGAGTTGTTTAGACTAGCCATGAACATATTGGCTCAGCAATGCCTCCCAGAACACATTCCTGCGGAAAgcgtaaggctgcagctacttagggagtgctgggagtcccactgtgcaagttt Alignment from CESAR GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCTCAG-AACGCCTCCCGGAACACCTTCCTGCGGAAAgc gggttaacctccttgcccccttcgactatccttcttgttccccaccacagGTATGGTCAGAGGAGTTGTTTAGACTAGCCATGAACATATTGGCTCAGCAATGCCTCCCAGAACACATTCCTGCGGAAAgcgtaaggctgcagctacttagggagtgctgggagtcccactgtgcaagttt Alignment from Spaln_aa2Genome GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCTCAG-AACGCCTCCCGGAACACCTTCCTGCGGAAAGC gggttaacctccttgcccccttcgactatccttcttgttccccaccacagGTATGGTCAGAGGAGTTGTTTAGACTAGCCATGAACATATTGGCTCAGcAATGCCTCCCAGAACACATTCCTGCGGAAAGCgtaaggctgcagctacttagggagtgctgggagtcccactgtgcaagttt Alignment from Spaln_nt2Genome GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCTCAG-AACGCCTCCCGGAACACCTTCCTGCGGAAAGC gggttaacctccttgcccccttcgactatccttcttgttccccaccacagGTATGGTCAGAGGAGTTGTTTAGACTAGCCATGAACATATTGGCTCAGCAATGCCTCCCAGAACACATTCCTGCGGAAAGCgtaaggctgcagctacttagggagtgctgggagtcccactgtgcaagttt Alignment from Pairagon GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCTCAG-AACGCCTCCCGGAACACCTTCCTGCGGAAAGC gggttaacctccttgcccccttcgactatccttcttgttccccaccacagGTATGGTCAGAGGAGTTGTTTAGACTAGCCATGAACATATTGGCTCAGCAATGCCTCCCAGAACACATTCCTGCGGAAAGCgtaaggctgcagctacttagggagtgctgggagtcccactgtgcaagttt Alignment from Exonerate_protein2genome GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCTCAG-AACGCCTCCCGGAACACCTTCCTGCGGAAAGC gggttaacctccttgcccccttcgactatccttcttgttccccaccacagGTATGGTCAGAGGAGTTGTTTAGACTAGCCATGAACATATTGGCTCAGCAATGCCTCCCAGAACACATTCCTGCGGAAAGCgtaaggctgcagctacttagggagtgctgggagtcccactgtgcaagttt Alignment from Exonerate_coding2genome GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCTCAG-AACGCCTCCCGGAACACCTTCCTGCGGAAAGC gggttaacctccttgcccccttcgactatccttcttgttccccaccacagGTATGGTCAGAGGAGTTGTTTAGACTAGCCATGAACATATTGGCTCAGCAATGCCTCCCAGAACACATTCCTGCGGAAAGCgtaaggctgcagctacttagggagtgctgggagtcccactgtgcaagttt Alignment from GeneWise GTCTGGTCAGAGGAGTTGTTTAAACTGGCCATGAACATATTGGCT-CAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC gggttaacctccttgcccccttcgactatccttcttgttccccaccacagGTATGGTCAGAGGAGTTGTTTAGACTAGCCATGAACATATTGGCTCAGCAATGCCTCCCAGAACACATTCCTGCGGAAAGCgtaaggctgcagctacttagggagtgctgggagtcccactgtgcaagttt #### Plcb3_ID1927_4 --> 0 - 0 Original Alignment GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTA-AATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gctcctccccttcttgttcattctatacacttgccttcttctctctttagGACCCTAAGATTCGAGAAGTT------TTTGGCGGCCCTGATACACGACTGGAGGAGAGATTGATGACAGTGGTTGCTGGGCCAGATTTAGTACACTACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtgagctggtgtcaactgacaaccaagggaggaggggttggattgtaaaa Alignment from CESAR GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTA-AATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gctcctccccttcttgttcattctatacacttgccttcttctctctttagGACCCTAAGATTCGAGAAGTT------TTTGGCGGCCCTGATACACGACTGGAGGAGAGATTGATGACAGTGGTTGCTGGGCCAGATTTAGTACACTACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtgagctggtgtcaactgacaaccaagggaggaggggttggattgtaaaa Alignment from Spaln_aa2Genome GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAAT-ACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gctcctccccttcttgttcattctatacacttgccttcttctctctttagGACCCTAAGATTCGAGAAGTT------TTTGGCGGCCCTGATACACGACTGGAGGAGAGATTGATGACAGTGGTTGCTGGGCCAGATTTAGTACACtACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtgagctggtgtcaactgacaaccaagggaggaggggttggattgtaaaa Alignment from Spaln_nt2Genome GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAA-TACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gctcctccccttcttgttcattctatacacttgccttcttctctctttagGACCCTAAGATTCGAGAAGT------TTTTGGCGGCCCTGATACACGACTGGAGGAGAGATTGATGACAGTGGTTGCTGGGCCAGATTTAGTACACTACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtgagctggtgtcaactgacaaccaagggaggaggggttggattgtaaaa Alignment from Pairagon GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTA-AATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gctcctccccttcttgttcattctatacacttgccttcttctctctttagGACCCTAAGATTCGAGAAGT------TTTTGGCGGCCCTGATACACGACTGGAGGAGAGATTGATGACAGTGGTTGCTGGGCCAGATTTAGTACACTACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtgagctggtgtcaactgacaaccaagggaggaggggttggattgtaaaa Alignment from Exonerate_protein2genome GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAAT-ACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gctcctccccttcttgttcattctatacacttgccttcttctctctttagGACCCTAAGATTCGAGAAGTT------TTTGGCGGCCCTGATACACGACTGGAGGAGAGATTGATGACAGTGGTTGCTGGGCCAGATTTAGTACACTACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtgagctggtgtcaactgacaaccaagggaggaggggttggattgtaaaa Alignment from Exonerate_coding2genome GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAAT-ACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gctcctccccttcttgttcattctatacacttgccttcttctctctttagGACCCTAAGATTCGAGAAGTT------TTTGGCGGCCCTGATACACGACTGGAGGAGAGATTGATGACAGTGGTTGCTGGGCCAGATTTAGTACACTACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtgagctggtgtcaactgacaaccaagggaggaggggttggattgtaaaa Alignment from GeneWise GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTA-AATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gctcctccccttcttgttcattctatacacttgccttcttctctctttagGACCCTAAGATTCGAGAAGTT------TTTGGCGGCCCTGATACACGACTGGAGGAGAGATTGATGACAGTGGTTGCTGGGCCAGATTTAGTACACTACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtgagctggtgtcaactgacaaccaagggaggaggggttggattgtaaaa #### Pola2_ID1324_16 --> 1 - 2 Original Alignment cTCTTCCGGGACGTCAGACAGATTCAGCCGA-GTCCTTAAGCATATCCTGACGCAGAGAag gcactgattagtaacctgtcttatccccacaatactttgtcttttcttagcTCTTTAGGGACACCAGATAGATTCAGCAGACGTCCTTAAGCACATTCTGACACAGAGGaggtaggggatgtccttccaaccacaagaggaatggaccatatttactagca Alignment from CESAR cTCTTCCGGGACGTCAGACAGATTCAGCCGA-GTCCTTAAGCATATCCTGACGCAGAGAag gcactgattagtaacctgtcttatccccacaatactttgtcttttcttagcTCTTTAGGGACACCAGATAGATTCAGCAGACGTCCTTAAGCACATTCTGACACAGAGGaggtaggggatgtccttccaaccacaagaggaatggaccatatttactagca Alignment from Spaln_aa2Genome CTCTTCCGGGACGTCAGACAGATTCAGCCGA-GTCCTTAAGCATATCCTGACGCAGAGAAG gcactgattagtaacctgtcttatccccacaatactttgtcttttcttagCTCTTTAGGGACACCAGATAGATTCAGCAGAcGTCCTTAAGCACATTCTGACACAGAGGAGgtaggggatgtccttccaaccacaagaggaatggaccatatttactagca Alignment from Spaln_nt2Genome CTCTTCCGGGACGTCAGACAGATTCAGCCGA-GTCCTTAAGCATATCCTGACGCAGAGAAG gcactgattagtaacctgtcttatccccacaatactttgtcttttcttagCTCTTTAGGGACACCAGATAGATTCAGCAGACGTCCTTAAGCACATTCTGACACAGAGGAGgtaggggatgtccttccaaccacaagaggaatggaccatatttactagca Alignment from Pairagon CTCTTCCGGGACGTCAGACAGATTCAGCCGA-GTCCTTAAGCATATCCTGACGCAGAGAAG gcactgattagtaacctgtcttatccccacaatactttgtcttttcttagCTCTTTAGGGACACCAGATAGATTCAGCAGACGTCCTTAAGCACATTCTGACACAGAGGAGgtaggggatgtccttccaaccacaagaggaatggaccatatttactagca Alignment from Exonerate_protein2genome CTCTTCCGGGACGTCAGACAGATTCAGCCGA-GTCCTTAAGCATATCCTGACGCAGAGAAG gcactgattagtaacctgtcttatccccacaatactttgtcttttcttagCTCTTTAGGGACACCAGATAGATTCAGCAGACGTCCTTAAGCACATTCTGACACAGAGGAGgtaggggatgtccttccaaccacaagaggaatggaccatatttactagca Alignment from Exonerate_coding2genome gcactgattagtaacctgtcttatccccacaatactttgtcttttcttagctctttagggacaccagatagattcagcagacgtccttaagcacattctgacacagaggaggtaggggatgtccttccaaccacaagaggaatggaccatatttactagca Alignment from GeneWise gcactgattagtaacctgtcttatccccacaatactttgtcttttcttagctctttagggacaccagatagattcagcagacgtccttaagcacattctgacacagaggaggtaggggatgtccttccaaccacaagaggaatggaccatatttactagca #### Pold4_ID438_3 --> 2 - 2 Original Alignment gtATCACAAGG---CTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTA-GAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCag catgccactaccaccccctgcctgtcacgctgtaatgtgtcttgctgcaggtATCACTAGGCTGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTACGAGGTGTATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCaggtgagtatagacccagacagcttcctcctggttatgtaggagctcacctg Alignment from CESAR gtATCACAAGGCTG---CAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTA-GAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCag catgccactaccaccccctgcctgtcacgctgtaatgtgtcttgctgcaggtATCACTAGGCTGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTACGAGGTGTATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCaggtgagtatagacccagacagcttcctcctggttatgtaggagctcacctg Alignment from Spaln_aa2Genome GTATCACAAGG---CTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTA-GAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG catgccactaccaccccctgcctgtcacgctgtaatgtgtcttgctgcagGTATCACTAGGCTGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAcGAGGTGTATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCAGgtgagtatagacccagacagcttcctcctggttatgtaggagctcacctg Alignment from Spaln_nt2Genome GTATCACAAGGCTGC---AGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTA-GAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG catgccactaccaccccctgcctgtcacgctgtaatgtgtcttgctgcagGTATCACTAGGCTGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTACGAGGTGTATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCAGgtgagtatagacccagacagcttcctcctggttatgtaggagctcacctg Alignment from Pairagon GTATCACAAG---GCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTA-GAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG catgccactaccaccccctgcctgtcacgctgtaatgtgtcttgctgcagGTATCACTAGGCTGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTACGAGGTGTATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCAGgtgagtatagacccagacagcttcctcctggttatgtaggagctcacctg Alignment from Exonerate_protein2genome GTATCACAAGG---CTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTA-GAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG catgccactaccaccccctgcctgtcacgctgtaatgtgtcttgctgcagGTATCACTAGGCTGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTACGAGGTGTATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCAGgtgagtatagacccagacagcttcctcctggttatgtaggagctcacctg Alignment from Exonerate_coding2genome GTATCACAAGG---CTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTA-GAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGC catgccactaccaccccctgcctgtcacgctgtaatgtgtcttgctgcagGTATCACTAGGCTGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTACGAGGTGTATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCaggtgagtatagacccagacagcttcctcctggttatgtaggagctcacctg Alignment from GeneWise GTATCACAAGGCTG---CAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCC-CTAGAGGTGTACCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGC catgccactaccaccccctgcctgtcacgctgtaatgtgtcttgctgcagGTATCACTAGGCTGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTACGAGGTGTATCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCAATGCaggtgagtatagacccagacagcttcctcctggttatgtaggagctcacctg #### Polr2g_ID2378_5 --> 0 - 0 Original Alignment TCCATCCCTTCAGAGATG-GAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAGACCATGGACGAG gtctagagttcctggttcctggaagtcactgatccggtttcctttggcagTCCATACCCTCAGAGATGCGAGTTTGACCCAAATTCAAACCCCCCTTGTTATAAGACCATGGATGAAgtactggagcatggaggagagggagagatgaagggtgaggaaagcaacac Alignment from CESAR TCCATCCCTTCAGAGATG-GAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAGACCATGGACGAG gtctagagttcctggttcctggaagtcactgatccggtttcctttggcagTCCATACCCTCAGAGATGCGAGTTTGACCCAAATTCAAACCCCCCTTGTTATAAGACCATGGATGAAgtactggagcatggaggagagggagagatgaagggtgaggaaagcaacac Alignment from Spaln_aa2Genome TCCATCCCTTCAGAGATG-GAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAGACCATGGACGAG gtctagagttcctggttcctggaagtcactgatccggtttcctttggcagTCCATACCCTCAGAGATGcGAGTTTGACCCAAATTCAAACCCCCCTTGTTATAAGACCATGGATGAAgtactggagcatggaggagagggagagatgaagggtgaggaaagcaacac Alignment from Spaln_nt2Genome TCCATCCCTTCAGAGATG-GAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAGACCATGGACGAG gtctagagttcctggttcctggaagtcactgatccggtttcctttggcagTCCATACCCTCAGAGATGCGAGTTTGACCCAAATTCAAACCCCCCTTGTTATAAGACCATGGATGAAgtactggagcatggaggagagggagagatgaagggtgaggaaagcaacac Alignment from Pairagon TCCATCCCTTCAGAGATG-GAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAGACCATGGACGAG gtctagagttcctggttcctggaagtcactgatccggtttcctttggcagTCCATACCCTCAGAGATGCGAGTTTGACCCAAATTCAAACCCCCCTTGTTATAAGACCATGGATGAAgtactggagcatggaggagagggagagatgaagggtgaggaaagcaacac Alignment from Exonerate_protein2genome TCCATCCCTTCAGAGATG-GAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAGACCATGGACGAG gtctagagttcctggttcctggaagtcactgatccggtttcctttggcagTCCATACCCTCAGAGATGCGAGTTTGACCCAAATTCAAACCCCCCTTGTTATAAGACCATGGATGAAgtactggagcatggaggagagggagagatgaagggtgaggaaagcaacac Alignment from Exonerate_coding2genome TCCATCCCTTCAGAGATG-GAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAGACCATGGACGAG gtctagagttcctggttcctggaagtcactgatccggtttcctttggcagTCCATACCCTCAGAGATGCGAGTTTGACCCAAATTCAAACCCCCCTTGTTATAAGACCATGGATGAAgtactggagcatggaggagagggagagatgaagggtgaggaaagcaacac Alignment from GeneWise CCATC-- -------CCTTCAGAGATGGAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAGACCATGGACGAG GTCTAGAgttcctggttcctggaagtcactgatccggtttcctttggcagTCCATACCCTCAGAGATGCGAGTTTGACCCAAATTCAAACCCCCCTTGTTATAAGACCATGGATGAAgtactggagcatggaggagagggagagatgaagggtgaggaaagcaacac #### Ppp1ca_ID408_2 --> 2 - 1 Original Alignment tgCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAA-TCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTg accatcatggtctatggggtcacgttcctttgttttgttttgttttttagtgCAGGGGTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGAATGAGATTCGTGGTCTGTGCCTCAAACTCTCGGGAGATTTTCCTAAGCCAGCCCATTCTTCTGGAACTTGAAGCACCGCTCAAGATCTGTggtgaggctggcatagaacactcttcccaggacatggatgcccctgcaagt Alignment from CESAR tgCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAA-TCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTg accatcatggtctatggggtcacgttcctttgttttgttttgttttttagtgCAGGGGTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGAATGAGATTCGTGGTCTGTGCCTCAAACTCTCGGGAGATTTTCCTAAGCCAGCCCATTCTTCTGGAACTTGAAGCACCGCTCAAGATCTGTggtgaggctggcatagaacactcttcccaggacatggatgcccctgcaagt Alignment from Spaln_aa2Genome TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAA-TCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG accatcatggtctatggggtcacgttcctttgttttgttttgttttttagTGCAGGGGTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGAATGAGATTCGTGGTCTGTGCCTCAAAcTCTCGGGAGATTTTCCTAAGCCAGCCCATTCTTCTGGAACTTGAAGCACCGCTCAAGATCTGTGgtgaggctggcatagaacactcttcccaggacatggatgcccctgcaagt Alignment from Spaln_nt2Genome TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTC-AAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG accatcatggtctatggggtcacgttcctttgttttgttttgttttttagTGCAGGGGTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGAATGAGATTCGTGGTCTGTGCCTCAAACTCTCGGGAGATTTTCCTAAGCCAGCCCATTCTTCTGGAACTTGAAGCACCGCTCAAGATCTGTGgtgaggctggcatagaacactcttcccaggacatggatgcccctgcaagt Alignment from Pairagon TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAA-TCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG accatcatggtctatggggtcacgttcctttgttttgttttgttttttagTGCAGGGGTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGAATGAGATTCGTGGTCTGTGCCTCAAACTCTCGGGAGATTTTCCTAAGCCAGCCCATTCTTCTGGAACTTGAAGCACCGCTCAAGATCTGTGgtgaggctggcatagaacactcttcccaggacatggatgcccctgcaagt Alignment from Exonerate_protein2genome TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAA-TCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG accatcatggtctatggggtcacgttcctttgttttgttttgttttttagTGCAGGGGTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGAATGAGATTCGTGGTCTGTGCCTCAAACTCTCGGGAGATTTTCCTAAGCCAGCCCATTCTTCTGGAACTTGAAGCACCGCTCAAGATCTGTGgtgaggctggcatagaacactcttcccaggacatggatgcccctgcaagt Alignment from Exonerate_coding2genome TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAA-TCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG accatcatggtctatggggtcacgttcctttgttttgttttgttttttagTGCAGGGGTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGAATGAGATTCGTGGTCTGTGCCTCAAACTCTCGGGAGATTTTCCTAAGCCAGCCCATTCTTCTGGAACTTGAAGCACCGCTCAAGATCTGTGgtgaggctggcatagaacactcttcccaggacatggatgcccctgcaagt Alignment from GeneWise TGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAA-TCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTG accatcatggtctatggggtcacgttcctttgttttgttttgttttttagTGCAGGGGTCTAGGCCTGGGAAAAATGTACAGCTAACAGAGAATGAGATTCGTGGTCTGTGCCTCAAACTCTCGGGAGATTTTCCTAAGCCAGCCCATTCTTCTGGAACTTGAAGCACCGCTCAAGATCTGTGgtgaggctggcatagaacactcttcccaggacatggatgcccctgcaagt #### Ppp1r32_ID2842_9 --> 0 - 0 Original Alignment GTGCCTACTCCAGCCCCACAGTCT-GCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tggaatatatcctgaagtgagccttgcatttggtatctcattctcctcagGTTCCTACCTCAGCCCCCCAGTCTCGCCAGCATGAGCCACAGATCCTACCGCCCCCCCCGGCGGATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAGgtactgattccaacactaatcctagtcccagcctgttctcttgaatcctg Alignment from CESAR GTGCCTACTCCAGCCCCACAGTCT-GCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tggaatatatcctgaagtgagccttgcatttggtatctcattctcctcagGTTCCTACCTCAGCCCCCCAGTCTCGCCAGCATGAGCCACAGATCCTACCGCCCCCCCCGGCGGATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAGgtactgattccaacactaatcctagtcccagcctgttctcttgaatcctg Alignment from Spaln_aa2Genome GTGCCTACTCCAGCCCCACAGTCT-GCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tggaatatatcctgaagtgagccttgcatttggtatctcattctcctcagGTTCCTACCTCAGCCCCCCAGTCTcGCCAGCATGAGCCACAGATCCTACCGCCCCCCCCGGCGGATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAGgtactgattccaacactaatcctagtcccagcctgttctcttgaatcctg Alignment from Spaln_nt2Genome GTGCCTACTCCAGCCCCACAGTCT-GCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tggaatatatcctgaagtgagccttgcatttggtatctcattctcctcagGTTCCTACCTCAGCCCCCCAGTCTCGCCAGCATGAGCCACAGATCCTACCGCCCCCCCCGGCGGATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAGgtactgattccaacactaatcctagtcccagcctgttctcttgaatcctg Alignment from Pairagon GTGCCTACTCCAGCCCCACAGTCT-GCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tggaatatatcctgaagtgagccttgcatttggtatctcattctcctcagGTTCCTACCTCAGCCCCCCAGTCTCGCCAGCATGAGCCACAGATCCTACCGCCCCCCCCGGCGGATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAGgtactgattccaacactaatcctagtcccagcctgttctcttgaatcctg Alignment from Exonerate_protein2genome GTGCCTACTCCAGCCCCACAGTCT-GCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tggaatatatcctgaagtgagccttgcatttggtatctcattctcctcagGTTCCTACCTCAGCCCCCCAGTCTCGCCAGCATGAGCCACAGATCCTACCGCCCCCCCCGGCGGATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAGgtactgattccaacactaatcctagtcccagcctgttctcttgaatcctg Alignment from Exonerate_coding2genome GTGCCTACTCCAGCCCCACAGTCT-GCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tggaatatatcctgaagtgagccttgcatttggtatctcattctcctcagGTTCCTACCTCAGCCCCCCAGTCTCGCCAGCATGAGCCACAGATCCTACCGCCCCCCCCGGCGGATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAGgtactgattccaacactaatcctagtcccagcctgttctcttgaatcctg Alignment from GeneWise GTGCCTACTCCAGCCCCACAG-TCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG tggaatatatcctgaagtgagccttgcatttggtatctcattctcctcagGTTCCTACCTCAGCCCCCCAGTCTCGCCAGCATGAGCCACAGATCCTACCGCCCCCCCCGGCGGATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAGgtactgattccaacactaatcctagtcccagcctgttctcttgaatcctg #### Ppp1r32_ID2843_8 --> 0 - 0 Original Alignment GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTC-AGCCGAGTGAATGAAAGGACCTTGAACCCCAGA gcatggattgtgtgaagaggtgatatccgttgttttgtttttataaatagGGGAGTGATTTCCTACCTGTGCTGTCCAGAGGATCTGATCGGGACACGGGATTTCAGCCGAGTAAATGAAAGAACTTTAAACCTGAGAgtaagtgccactgagagtagggaaatgtatagtagtagatcaggggtatg Alignment from CESAR GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGA-TTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA gcatggattgtgtgaagaggtgatatccgttgttttgtttttataaatagGGGAGTGATTTCCTACCTGTGCTGTCCAGAGGATCTGATCGGGACACGGGATTTCAGCCGAGTAAATGAAAGAACTTTAAACCTGAGAgtaagtgccactgagagtagggaaatgtatagtagtagatcaggggtatg Alignment from Spaln_aa2Genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTC-AGCCGAGTGAATGAAAGGACCTTGAACCCCAGA gcatggattgtgtgaagaggtgatatccgttgttttgtttttataaatagGGGAGTGATTTCCTACCTGTGCTGTCCAGAGGATCTGATCGGGACACGGGATTTcAGCCGAGTAAATGAAAGAACTTTAAACCTGAGAgtaagtgccactgagagtagggaaatgtatagtagtagatcaggggtatg Alignment from Spaln_nt2Genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGAT-TCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA gcatggattgtgtgaagaggtgatatccgttgttttgtttttataaatagGGGAGTGATTTCCTACCTGTGCTGTCCAGAGGATCTGATCGGGACACGGGATTTCAGCCGAGTAAATGAAAGAACTTTAAACCTGAGAgtaagtgccactgagagtagggaaatgtatagtagtagatcaggggtatg Alignment from Pairagon GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGA-TTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA gcatggattgtgtgaagaggtgatatccgttgttttgtttttataaatagGGGAGTGATTTCCTACCTGTGCTGTCCAGAGGATCTGATCGGGACACGGGATTTCAGCCGAGTAAATGAAAGAACTTTAAACCTGAGAgtaagtgccactgagagtagggaaatgtatagtagtagatcaggggtatg Alignment from Exonerate_protein2genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGA-TTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA gcatggattgtgtgaagaggtgatatccgttgttttgtttttataaatagGGGAGTGATTTCCTACCTGTGCTGTCCAGAGGATCTGATCGGGACACGGGATTTCAGCCGAGTAAATGAAAGAACTTTAAACCTGAGAgtaagtgccactgagagtagggaaatgtatagtagtagatcaggggtatg Alignment from Exonerate_coding2genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGA-TTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA gcatggattgtgtgaagaggtgatatccgttgttttgtttttataaatagGGGAGTGATTTCCTACCTGTGCTGTCCAGAGGATCTGATCGGGACACGGGATTTCAGCCGAGTAAATGAAAGAACTTTAAACCTGAGAgtaagtgccactgagagtagggaaatgtatagtagtagatcaggggtatg Alignment from GeneWise GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGGGACACTGGATTC-AGCCGAGTGAATGAAAGGACCTTGAACCCCAGA gcatggattgtgtgaagaggtgatatccgttgttttgtttttataaatagGGGAGTGATTTCCTACCTGTGCTGTCCAGAGGATCTGATCGGGACACGGGATTTCAGCCGAGTAAATGAAAGAACTTTAAACCTGAGAgtaagtgccactgagagtagggaaatgtatagtagtagatcaggggtatg #### Ppp1r32_ID2844_7 --> 0 - 0 Original Alignment GTCCTCCATCCAGGACGGAGTATCACCAAGTCA-GACTACCTCCCTGTAACTCACCCTCAG gtctgcaacacacatctactctctactgtttcttgttttccctcttatagGTCCTTCATCCAGGTCGAAGTATCACCAAGTCACGACTACCTTCCTCTAACTCACCCTCAGgtaagtactgctccgctaaggggacagggctgcctatgggtacaactatg Alignment from CESAR GTCCTCCATCCAGGACGGAGTATCACCAAGTCA-GACTACCTCCCTGTAACTCACCCTCAG gtctgcaacacacatctactctctactgtttcttgttttccctcttatagGTCCTTCATCCAGGTCGAAGTATCACCAAGTCACGACTACCTTCCTCTAACTCACCCTCAGgtaagtactgctccgctaaggggacagggctgcctatgggtacaactatg Alignment from Spaln_aa2Genome GTCCTCCATCCAGGACGGAGTATCACCAAGTCA-GACTACCTCCCTGTAACTCACCCTCAG gtctgcaacacacatctactctctactgtttcttgttttccctcttatagGTCCTTCATCCAGGTCGAAGTATCACCAAGTCAcGACTACCTTCCTCTAACTCACCCTCAGgtaagtactgctccgctaaggggacagggctgcctatgggtacaactatg Alignment from Spaln_nt2Genome GTCCTCCATCCAGGACGGAGTATCACCAAGTCA-GACTACCTCCCTGTAACTCACCCTCAG gtctgcaacacacatctactctctactgtttcttgttttccctcttatagGTCCTTCATCCAGGTCGAAGTATCACCAAGTCACGACTACCTTCCTCTAACTCACCCTCAGgtaagtactgctccgctaaggggacagggctgcctatgggtacaactatg Alignment from Pairagon GTCCTCCATCCAGGACGGAGTATCACCAAGTCA-GACTACCTCCCTGTAACTCACCCTCAG gtctgcaacacacatctactctctactgtttcttgttttccctcttatagGTCCTTCATCCAGGTCGAAGTATCACCAAGTCACGACTACCTTCCTCTAACTCACCCTCAGgtaagtactgctccgctaaggggacagggctgcctatgggtacaactatg Alignment from Exonerate_protein2genome GTCCTCCATCCAGGACGGAGTATCACCAAGTCA-GACTACCTCCCTGTAACTCACCCTCAG gtctgcaacacacatctactctctactgtttcttgttttccctcttatagGTCCTTCATCCAGGTCGAAGTATCACCAAGTCACGACTACCTTCCTCTAACTCACCCTCAGgtaagtactgctccgctaaggggacagggctgcctatgggtacaactatg Alignment from Exonerate_coding2genome GTCCTCCATCCAGGACGGAGTATCACCAAGTCA-GACTACCTCCCTGTAACTCACCCTCAG gtctgcaacacacatctactctctactgtttcttgttttccctcttatagGTCCTTCATCCAGGTCGAAGTATCACCAAGTCACGACTACCTTCCTCTAACTCACCCTCAGgtaagtactgctccgctaaggggacagggctgcctatgggtacaactatg Alignment from GeneWise GTCCTCCATCCAGGACGGAGTATCACCAAG-TCAGACTACCTCCCTGTAACTCACCCTCAG gtctgcaacacacatctactctctactgtttcttgttttccctcttatagGTCCTTCATCCAGGTCGAAGTATCACCAAGTCACGACTACCTTCCTCTAACTCACCCTCAGgtaagtactgctccgctaaggggacagggctgcctatgggtacaactatg #### Pprc1_ID9716_4 --> 0 - 0 Original Alignment CCCCTCGGGAGAGCTCCTCT CTGCACAAGCTGCTCAATCTCTCTCGGACACCCCCAGAA-CGTGACCTTATCACCCCAATTGACCCTTTGGGGCCCAGCACAGGAAGTAGTCGGGTGAGTGGG CAGCTCGAGAGAGTTCATCTgtaaagaatactcccccactcgcccaccagTTGCACAAGCTCCTGAATCTGTCTCGCACACCCCCAGAACCGCGATCTTATCACCCCGATTGATCCTTTGGGGCCTAGCACTGGAAGTAGTCGAGTGAGTGGTgtgagcgatctaggaaccttctgacagagggcgagggcgtggataggcag Alignment from CESAR CCCCTCGGGAGAGCTCCTCT CTGCACAAGCTGCTCAATCTCTCTCGGACACCCCCAGAA-CGTGACCTTATCACCCCAATTGACCCTTTGGGGCCCAGCACAGGAAGTAGTCGGGTGAGTGGG CAGCTCGAGAGAGTTCATCTgtatgtaatactcccccactcgcccaccagTTGCACAAGCTCCTGAATCTGTCTCGCACACCCCCAGAACCGCGATCTTATCACCCCGATTGATCCTTTGGGGCCTAGCACTGGAAGTAGTCGAGTGAGTGGTgtgagcgatctaggaaccttctgacagagggcgagggcgtggataggcag Alignment from Spaln_aa2Genome CCCCTCGGGAGAGCTCCTCT------------------------------CTGCACAAGCTGCTCAATCTCTCTCGGACACCCCCAGAA-CGTGACCTTATCACCCCAATTGACCCTTTGGGGCCCAGCACAGGAAGTAGTCGGGTGAGTGGG CAGCTCGAGAGAGTTCATCTGTAAAGAATACTCCCCCACTCGCCCACCAGTTGCACAAGCTCCTGAATCTGTCTCGCACACCCCCAGAAcCGCGATCTTATCACCCCGATTGATCCTTTGGGGCCTAGCACTGGAAGTAGTCGAGTGAGTGGTgtgagcgatctaggaaccttctgacagagggcgagggcgtggataggcag Alignment from Spaln_nt2Genome CCCCTCGGGAGA GCTCCTCTCTGCACAAGCTGCTCAATCTCTCTCGGACACCCCCAGAAC-GTGACCTTATCACCCCAATTGACCCTTTGGGGCCCAGCACAGGAAGTAGTCGGGTGAGTGGG CAGCTCGAGAGAgttcatctgtaaagaatactcccccactcgcccaccag--------TTGCACAAGCTCCTGAATCTGTCTCGCACACCCCCAGAACCGCGATCTTATCACCCCGATTGATCCTTTGGGGCCTAGCACTGGAAGTAGTCGAGTGAGTGGTgtgagcgatctaggaaccttctgacagagggcgagggcgtggataggcag Alignment from Pairagon CCCCTCGGGAGAGCTCCTCT CTGCACAAGCTGCTCAATCTCTCTCGGACACCCCCAGAA-CGTGACCTTATCACCCCAATTGACCCTTTGGGGCCCAGCACAGGAAGTAGTCGGGTGAGTGGG CAGCTCGAGAGAGTTCATCTgtaaagaatactcccccactcgcccaccagTTGCACAAGCTCCTGAATCTGTCTCGCACACCCCCAGAACCGCGATCTTATCACCCCGATTGATCCTTTGGGGCCTAGCACTGGAAGTAGTCGAGTGAGTGGTgtgagcgatctaggaaccttctgacagagggcgagggcgtggataggcag Alignment from Exonerate_protein2genome CCCCTCGGGAGAGCTCCTCT CTGCACAAGCTGCTCAATCTCTCTCGGACACCCCCAGAA-CGTGACCTTATCACCCCAATTGACCCTTTGGGGCCCAGCACAGGAAGTAGTCGGGTGAGTGGG CAGCTCGAGAGAGTTCATCTgtaaagaatactcccccactcgcccaccagTTGCACAAGCTCCTGAATCTGTCTCGCACACCCCCAGAACCGCGATCTTATCACCCCGATTGATCCTTTGGGGCCTAGCACTGGAAGTAGTCGAGTGAGTGGTgtgagcgatctaggaaccttctgacagagggcgagggcgtggataggcag Alignment from Exonerate_coding2genome CCCCTCGGGAGAGCTCCTCT CTGCACAAGCTGCTCAATCTCTCTCGGACACCCCCAGAA-CGTGACCTTATCACCCCAATTGACCCTTTGGGGCCCAGCACAGGAAGTAGTCGGGTGAGTGGG CAGCTCGAGAGAGTTCATCTgtaaagaatactcccccactcgcccaccagTTGCACAAGCTCCTGAATCTGTCTCGCACACCCCCAGAACCGCGATCTTATCACCCCGATTGATCCTTTGGGGCCTAGCACTGGAAGTAGTCGAGTGAGTGGTgtgagcgatctaggaaccttctgacagagggcgagggcgtggataggcag Alignment from GeneWise CCCCTCGGGAGAGCTCCTCT------------------------------CTGCACAAGCTGCTCAATCTCTCTCGGACACCCCCA-GAACGTGACCTTATCACCCCAATTGACCCTTTGGGGCCCAGCACAGGAAGTAGTCGGGTGAGTGGG CAGCTCGAGAGAGTTCATCTGTAAAGAATACTCCCCCACTCGCCCACCAGTTGCACAAGCTCCTGAATCTGTCTCGCACACCCCCAGAACCGCGATCTTATCACCCCGATTGATCCTTTGGGGCCTAGCACTGGAAGTAGTCGAGTGAGTGGTgtgagcgatctaggaaccttctgacagagggcgagggcgtggataggcag #### Pprc1_ID9724_12 --> 0 - 2 Original Alignment GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCGGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAG-TGTACCATTCATTTTCGTGTCCAAgg tcaacagctgtagatgcagcttgaagtccatactaaacaacccctcctagGAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGGATGACTCGGTCAGAGCTTAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGCTGTACCATCCATTTTAGGGTGCAAgggtgaggcataaaggcaggttctctctgttgcgttttcctgttgaaattta Alignment from CESAR GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCGGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAG-TGTACCATTCATTTTCGTGTCCAAgg tcaacagctgtagatgcagcttgaagtccatactaaacaacccctcctagGAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGGATGACTCGGTCAGAGCTTAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGCTGTACCATCCATTTTAGGGTGCAAgggtgaggcataaaggcaggttctctctgttgcgttttcctgttgaaattta Alignment from Spaln_aa2Genome GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCGGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAG-TGTACCATTCATTTTCGTGTCCAAGG tcaacagctgtagatgcagcttgaagtccatactaaacaacccctcctagGAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGGATGACTCGGTCAGAGCTTAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGcTGTACCATCCATTTTAGGGTGCAAGGgtgaggcataaaggcaggttctctctgttgcgttttcctgttgaaattta Alignment from Spaln_nt2Genome GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCGGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAG-TGTACCATTCATTTTCGTGTCCAAGG tcaacagctgtagatgcagcttgaagtccatactaaacaacccctcctagGAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGGATGACTCGGTCAGAGCTTAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGCTGTACCATCCATTTTAGGGTGCAAGGgtgaggcataaaggcaggttctctctgttgcgttttcctgttgaaattta Alignment from Pairagon GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCGGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAG-TGTACCATTCATTTTCGTGTCCAAGG tcaacagctgtagatgcagcttgaagtccatactaaacaacccctcctagGAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGGATGACTCGGTCAGAGCTTAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGCTGTACCATCCATTTTAGGGTGCAAGGgtgaggcataaaggcaggttctctctgttgcgttttcctgttgaaattta Alignment from Exonerate_protein2genome GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCGGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAG-TGTACCATTCATTTTCGTGTCCAAGG tcaacagctgtagatgcagcttgaagtccatactaaacaacccctcctagGAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGGATGACTCGGTCAGAGCTTAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGCTGTACCATCCATTTTAGGGTGCAAGGgtgaggcataaaggcaggttctctctgttgcgttttcctgttgaaattta Alignment from Exonerate_coding2genome GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCGGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAG-TGTACCATTCATTTTCGTGTCCAAGG tcaacagctgtagatgcagcttgaagtccatactaaacaacccctcctagGAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGGATGACTCGGTCAGAGCTTAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGCTGTACCATCCATTTTAGGGTGCAAGGgtgaggcataaaggcaggttctctctgttgcgttttcctgttgaaattta Alignment from GeneWise GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCGGAGCTGAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAG-GAGTGTACCATTCATTTTCGTGTCCAAGG tcaacagctgtagatgcagcttgaagtccatactaaacaacccctcctagGAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGGATGACTCGGTCAGAGCTTAAACAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGCTGTACCATCCATTTTAGGGTGCAAGGgtgaggcataaaggcaggttctctctgttgcgttttcctgttgaaattta #### Prdx5_ID1853_4 --> 0 - 0 Original Alignment GTTCGGCTCCTGGCTGACCCCACT-GGAGCCTTTGGGAAG ctgagagtcggcacctccactcaccaagaccctgttgcctctgccctcagGTTCGGCTCCTGGCTGACCCCACTCGGAGCCTTTGGGAAGgtaagagtaccttgccatgcaatcagtctttgaaggacacatatacaggg Alignment from CESAR GTTCGGCTCCTGGCTGACCCCACT-GGAGCCTTTGGGAAG ctgagagtcggcacctccactcaccaagaccctgttgcctctgccctcagGTTCGGCTCCTGGCTGACCCCACTCGGAGCCTTTGGGAAGgtaagagtaccttgccatgcaatcagtctttgaaggacacatatacaggg Alignment from Spaln_aa2Genome GTTCGGCTCCTGGCTGACCCCACTGGAGCCTTTGGGAAGGCGACAG ctgagagtcggcacctccactcaccaagaccctgttgcctctgccctcagGTTCGGCTCCTGGCTGACCCCACTCGGAGCCTTTGGGAAGGTAAGAgtaccttgccatgcaatcagtctttgaaggacacatatacaggg Alignment from Spaln_nt2Genome GTTCGGCTCCTGGCTGACCCCACT-GGAGCCTTTGGGAAG ctgagagtcggcacctccactcaccaagaccctgttgcctctgccctcagGTTCGGCTCCTGGCTGACCCCACTCGGAGCCTTTGGGAAGgtaagagtaccttgccatgcaatcagtctttgaaggacacatatacaggg Alignment from Pairagon GTTCGGCTCCTGGCTGACCCCACT-GGAGCCTTTGGGAAG ctgagagtcggcacctccactcaccaagaccctgttgcctctgccctcagGTTCGGCTCCTGGCTGACCCCACTCGGAGCCTTTGGGAAGgtaagagtaccttgccatgcaatcagtctttgaaggacacatatacaggg Alignment from Exonerate_protein2genome GTTCGGCTCCTGGCTGACCCCACT-GGAGCCTTTGGGAAG ctgagagtcggcacctccactcaccaagaccctgttgcctctgccctcagGTTCGGCTCCTGGCTGACCCCACTCGGAGCCTTTGGGAAGgtaagagtaccttgccatgcaatcagtctttgaaggacacatatacaggg Alignment from Exonerate_coding2genome GTTCGGCTCCTGGCTGACCCCACT-GGAGCCTTTGGGAAG ctgagagtcggcacctccactcaccaagaccctgttgcctctgccctcagGTTCGGCTCCTGGCTGACCCCACTCGGAGCCTTTGGGAAGgtaagagtaccttgccatgcaatcagtctttgaaggacacatatacaggg Alignment from GeneWise ctgagagtcggcacctccactcaccaagaccctgttgcctctgccctcaggttcggctcctggctgaccccactcggagcctttgggaaggtaagagtaccttgccatgcaatcagtctttgaaggacacatatacaggg #### Prdx5_ID1854_3 --> 0 - 0 Original Alignment ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGA-GCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG gccataagtatctgtacctatttttcatttctgccactggccttgcacagACCCACCTGCCTGGCTTGGTGGAGCAGGCTGGACGCTCGGAAAGCCAAGGGAGCGCAGGTAGTGGCTTGTCTAAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAGgtgagtaatctctgcggctaattgtgaaggtctagggccaggtaggaagt Alignment from CESAR ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGA-GCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG gccataagtatctgtacctatttttcatttctgccactggccttgcacagACCCACCTGCCTGGCTTGGTGGAGCAGGCTGGACGCTCGGAAAGCCAAGGGAGCGCAGGTAGTGGCTTGTCTAAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAGgtgagtaatctctgcggctaattgtgaaggtctagggccaggtaggaagt Alignment from Spaln_aa2Genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGA-GCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG gccataagtatctgtacctatttttcatttctgccactggccttgcacagACCCACCTGCCTGGCTTGGTGGAGCAGGCTGGAcGCTCGGAAAGCCAAGGGAGCGCAGGTAGTGGCTTGTCTAAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAGgtgagtaatctctgcggctaattgtgaaggtctagggccaggtaggaagt Alignment from Spaln_nt2Genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGA-GCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG gccataagtatctgtacctatttttcatttctgccactggccttgcacagACCCACCTGCCTGGCTTGGTGGAGCAGGCTGGACGCTCGGAAAGCCAAGGGAGCGCAGGTAGTGGCTTGTCTAAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAGgtgagtaatctctgcggctaattgtgaaggtctagggccaggtaggaagt Alignment from Pairagon ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGA-GCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG gccataagtatctgtacctatttttcatttctgccactggccttgcacagACCCACCTGCCTGGCTTGGTGGAGCAGGCTGGACGCTCGGAAAGCCAAGGGAGCGCAGGTAGTGGCTTGTCTAAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAGgtgagtaatctctgcggctaattgtgaaggtctagggccaggtaggaagt Alignment from Exonerate_protein2genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGA-GCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG gccataagtatctgtacctatttttcatttctgccactggccttgcacagACCCACCTGCCTGGCTTGGTGGAGCAGGCTGGACGCTCGGAAAGCCAAGGGAGCGCAGGTAGTGGCTTGTCTAAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAGgtgagtaatctctgcggctaattgtgaaggtctagggccaggtaggaagt Alignment from Exonerate_coding2genome ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGA-GCTCTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG gccataagtatctgtacctatttttcatttctgccactggccttgcacagACCCACCTGCCTGGCTTGGTGGAGCAGGCTGGACGCTCGGAAAGCCAAGGGAGCGCAGGTAGTGGCTTGTCTAAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAGgtgagtaatctctgcggctaattgtgaaggtctagggccaggtaggaagt Alignment from GeneWise ACCCACCTGCCTGGGTTTGTGGAGCAAGCTGGAGCT-CTGAAGGCCAAGGGAGCGCAGGTGGTGGCCTGTCTGAGCGTTAATGACGTCTTTGTGATTGAAGAGTGGGGTCGAGCCCACCAGGCAGAAGGCAAG gccataagtatctgtacctatttttcatttctgccactggccttgcacagACCCACCTGCCTGGCTTGGTGGAGCAGGCTGGACGCTCGGAAAGCCAAGGGAGCGCAGGTAGTGGCTTGTCTAAGTGTTAATGATGTCTTTGTGATTGAGGAGTGGGGCCGAGCCCATGAAGCAGAAGGTAAGgtgagtaatctctgcggctaattgtgaaggtctagggccaggtaggaagt #### Prpf19_ID3043_2 --> 2 - 1 Original Alignment tcTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGC-ACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAg gatatagcttttctcctgtatacaccctaaaaaaatttcctatgttttagtcTCCAATGAAGTGCCAGAGCACCCATGCGTGTCACCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGACATCAAAggtactagcctgctgcaggttcactgccagtgccactcagcctccaagcca Alignment from CESAR tcTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGC-ACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAg gatatagcttttctcctgtatacaccctaaaaaaatttcctatgttttagtcTCCAATGAAGTGCCAGAGCACCCATGCGTGTCACCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGACATCAAAggtactagcctgctgcaggttcactgccagtgccactcagcctccaagcca Alignment from Spaln_aa2Genome TCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGC-ACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatagcttttctcctgtatacaccctaaaaaaatttcctatgttttagTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCACCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCcACAGATCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGACATCAAAGgtactagcctgctgcaggttcactgccagtgccactcagcctccaagcca Alignment from Spaln_nt2Genome TCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGG-CACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatagcttttctcctgtatacaccctaaaaaaatttcctatgttttagTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCACCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGACATCAAAGgtactagcctgctgcaggttcactgccagtgccactcagcctccaagcca Alignment from Pairagon TCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGG-CACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatagcttttctcctgtatacaccctaaaaaaatttcctatgttttagTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCACCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGACATCAAAGgtactagcctgctgcaggttcactgccagtgccactcagcctccaagcca Alignment from Exonerate_protein2genome ATCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGC-ACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatagcttttctcctgtatacaccctaaaaaaatttcctatgttttaGTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCACCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGACATCAAAGgtactagcctgctgcaggttcactgccagtgccactcagcctccaagcca Alignment from Exonerate_coding2genome ATCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGC-ACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatagcttttctcctgtatacaccctaaaaaaatttcctatgttttaGTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCACCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGACATCAAAGgtactagcctgctgcaggttcactgccagtgccactcagcctccaagcca Alignment from GeneWise TCCCTGATCTGCTCGATCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGC-ACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG atagcttttctcctgtatacaccctaaaaaaattTCCTATGTTTTA---GTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCACCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGACATCAAAGgtactagcctgctgcaggttcactgccagtgccactcagcctccaagcca #### Prpf19_ID3044_3 --> 2 - 0 Original Alignment ttGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATC-CCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA agctccctgcatcccagatctctatactgaatctctgtcctttctcctagtgGCACACCCAATCCGACCCAAGCCTCCCTCTGCCACCAGTATCCCCAGCCATTCTGAAGGCCTTGCAAGATGAGTGGgtgagtccaatttcttttgcttcatttttttagGATGCAGTCATGCTGCA Alignment from CESAR ttGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATC-CCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA agctccctgcatcccagatctctatactgaatctctgtcctttctcctagtgGCACACCCAATCCGACCCAAGCCTCCCTCTGCCACCAGTATCCCCAGCCATTCTGAAGGCCTTGCAAGATGAGTGGgtgagtccaatctgtctcttgatgcctctgcagGATGCAGTCATGCTGCA Alignment from Spaln_aa2Genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCA-GCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA agctccctgcatcccagatctctatactgaatctctgtcctttctcctagTGGCACACCCAATCCGACCCAAGCCTCCCTCTGCCACCAGTATCCCCaGCCATTCTGAAGGCCTTGCAAGATGAGTGGgtgagtccaatttcttttgcttcatttttttagGATGCAGTCATGCTGCA Alignment from Spaln_nt2Genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCC-CAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA agctccctgcatcccagatctctatactgaatctctgtcctttctcctagTGGCACACCCAATCCGACCCAAGCCTCCCTCTGCCACCAGTATCCCCAGCCATTCTGAAGGCCTTGCAAGATGAGTGGgtgagtccaatttcttttgcttcatttttttagGATGCAGTCATGCTGCA Alignment from Pairagon TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCAT-CCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA agctccctgcatcccagatctctatactgaatctctgtcctttctcctagTGGCACACCCAATCCGACCCAAGCCTCCCTCTGCCACCAGTATCCCCAGCCATTCTGAAGGCCTTGCAAGATGAGTGGgtgagtccaatttcttttgcttcatttttttagGATGCAGTCATGCTGCA Alignment from Exonerate_protein2genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATC-CCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA agctccctgcatcccagatctctatactgaatctctgtcctttctcctagTGGCACACCCAATCCGACCCAAGCCTCCCTCTGCCACCAGTATCCCCAGCCATTCTGAAGGCCTTGCAAGATGAGTGGgtgagtccaatttcttttgcttcatttttttagGATGCAGTCATGCTGCA Alignment from Exonerate_coding2genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATC-CCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA agctccctgcatcccagatctctatactgaatctctgtcctttctcctagTGGCACACCCAATCCGACCCAAGCCTCCCTCTGCCACCAGTATCCCCAGCCATTCTGAAGGCCTTGCAAGATGAGTGGgtgagtccaatttcttttgcttcatttttttagGATGCAGTCATGCTGCA Alignment from GeneWise TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACCAGCATCCCA-GCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA agctccctgcatcccagatctctatactgaatctctgtcctttctcctagTGGCACACCCAATCCGACCCAAGCCTCCCTCTGCCACCAGTATCCCCAGCCATTCTGAAGGCCTTGCAAGATGAGTGGgtgagtccaatttcttttgcttcatttttttagGATGCAGTCATGCTGCA #### Prpf19_ID3045_4 --> 0 - 1 Original Alignment CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTC-ACTGCTGCTCGAGAAg CCTTGCAAGATGAGTGGgtgtgtccaatctgtctcttgatgcctctgcagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCCACTGCTGCTCGAGAAggtaagtcatatttcattgtaaagtccctatacggtttcttctttattcct Alignment from CESAR CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTC-ACTGCTGCTCGAGAAg CCTTGCAAGATGAGTGGgtgagtccaatctgtctcttgatgcctctgcagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCCACTGCTGCTCGAGAAggtaagtcatatttcattgtaaagtccctatcaacctcctttcccattccc Alignment from Spaln_aa2Genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTC-ACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtgtgtccaatctgtctcttgatgcctctgcagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCcACTGCTGCTCGAGAAGgtaagtcatatttcattgtaaagtccctatacggtttcttctttattcct Alignment from Spaln_nt2Genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGT-CACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtgtgtccaatctgtctcttgatgcctctgcagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCCACTGCTGCTCGAGAAGgtaagtcatatttcattgtaaagtccctatacggtttcttctttattcct Alignment from Pairagon CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGT-CACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtgtgtccaatctgtctcttgatgcctctgcagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCCACTGCTGCTCGAGAAGgtaagtcatatttcattgtaaagtccctatacggtttcttctttattcct Alignment from Exonerate_protein2genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTC-ACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtgtgtccaatctgtctcttgatgcctctgcagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCCACTGCTGCTCGAGAAGgtaagtcatatttcattgtaaagtccctatacggtttcttctttattcct Alignment from Exonerate_coding2genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTC-ACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtgtgtccaatctgtctcttgatgcctctgcagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCCACTGCTGCTCGAGAAGgtaagtcatatttcattgtaaagtccctatacggtttcttctttattcct Alignment from GeneWise CCTTGCAGGATGAGTGG---------------------------------GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAG-GTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGGTGTGTCCAATCTGTCTCTTGATGCCTCTGCAGGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCCACTGCTGCTCGAGAAGgtaagtcatatttcattgtaaagtccctatacggtttcttctttattcct #### Prpf19_ID3047_6 --> 0 - 0 Original Alignment GGTGCAGGAGAGCCC-ATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG gttcttgttgttgtgagtttgccccactcccaggcccttcctcccctcagGGAGCTGGAGAGGCCCATGGACTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAAgtgaaatgagagcacacctcccatgagactgtaatctcatcattacaacc Alignment from CESAR GGTGCAGGAGAG-CCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG gttcttgttgttgtgagtttgccccactcccaggcccttcctcccctcagGGAGCTGGAGAGGCCCATGGACTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAAgtgaaatgagagcacacctcccatgagactgtaatctcatcattacaacc Alignment from Spaln_aa2Genome -GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG gttcttgttgttgtgagtttgccccactcccaggcccttcctcccctcagGGAGCTGGAGAGGCCCATGGACTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAAgtgaaatgagagcacacctcccatgagactgtaatctcatcattacaacc Alignment from Spaln_nt2Genome GGTGCAGGAGAG-CCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG gttcttgttgttgtgagtttgccccactcccaggcccttcctcccctcagGGAGCTGGAGAGGCCCATGGACTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAAgtgaaatgagagcacacctcccatgagactgtaatctcatcattacaacc Alignment from Pairagon GGTGCAGGAGA-GCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG gttcttgttgttgtgagtttgccccactcccaggcccttcctcccctcagGGAGCTGGAGAGGCCCATGGACTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAAgtgaaatgagagcacacctcccatgagactgtaatctcatcattacaacc Alignment from Exonerate_protein2genome GGTGCAGGAGAG-CCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG gttcttgttgttgtgagtttgccccactcccaggcccttcctcccctcagGGAGCTGGAGAGGCCCATGGACTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAAgtgaaatgagagcacacctcccatgagactgtaatctcatcattacaacc Alignment from Exonerate_coding2genome GGTGCAGGAGAG-CCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG gttcttgttgttgtgagtttgccccactcccaggcccttcctcccctcagGGAGCTGGAGAGGCCCATGGACTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAAgtgaaatgagagcacacctcccatgagactgtaatctcatcattacaacc Alignment from GeneWise GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAG gttcttgttgttgtgagtttgccccactcccaggcccttcctcccctcagggagCTGGAG---AGGCCCATGGACTTGGGTGAGCTGGTGGGAATGACCCCTGAGATTATCCAGAAAgtgaaatgagagcacacctcccatgagactgtaatctcatcattacaacc #### Prpf19_ID3048_7 --> 0 - 0 Original Alignment CTTCAAGACAAG-GCTACTGTGCTAACCACGGAGCGTAAGAAG gcccactttattcgaaaataattatttttatgtgtttccttcccatctagCTTCAAGACAAGCGCCACTGTGTTAACCACAGAACGAAAGAAGgtgaggctgtctgttacgaagatagctgcatctttggagagaagtgtagg Alignment from CESAR CTTCAAGACAAG-GCTACTGTGCTAACCACGGAGCGTAAGAAG gcccactttattcgaaaataattatttttatgtgtttccttcccatctagCTTCAAGACAAGCGCCACTGTGTTAACCACAGAACGAAAGAAGgtgaggctgtctgttacgaagatagctgcatctttggagagaagtgtagg Alignment from Spaln_aa2Genome CTTCAAGACAAG-GCTACTGTGCTAACCACGGAGCGTAAGAAG gcccactttattcgaaaataattatttttatgtgtttccttcccatctagCTTCAAGACAAGcGCCACTGTGTTAACCACAGAACGAAAGAAGgtgaggctgtctgttacgaagatagctgcatctttggagagaagtgtagg Alignment from Spaln_nt2Genome CTTCAAGACAAG-GCTACTGTGCTAACCACGGAGCGTAAGAAG gcccactttattcgaaaataattatttttatgtgtttccttcccatctagCTTCAAGACAAGCGCCACTGTGTTAACCACAGAACGAAAGAAGgtgaggctgtctgttacgaagatagctgcatctttggagagaagtgtagg Alignment from Pairagon CTTCAAGACAAG-GCTACTGTGCTAACCACGGAGCGTAAGAAG gcccactttattcgaaaataattatttttatgtgtttccttcccatctagCTTCAAGACAAGCGCCACTGTGTTAACCACAGAACGAAAGAAGgtgaggctgtctgttacgaagatagctgcatctttggagagaagtgtagg Alignment from Exonerate_protein2genome CTTCAAGACAAG-GCTACTGTGCTAACCACGGAGCGTAAGAAG gcccactttattcgaaaataattatttttatgtgtttccttcccatctagCTTCAAGACAAGCGCCACTGTGTTAACCACAGAACGAAAGAAGgtgaggctgtctgttacgaagatagctgcatctttggagagaagtgtagg Alignment from Exonerate_coding2genome gcccactttattcgaaaataattatttttatgtgtttccttcccatctagcttcaagacaagcgccactgtgttaaccacagaacgaaagaaggtgaggctgtctgttacgaagatagctgcatctttggagagaagtgtagg Alignment from GeneWise --------- gcccactttattcgaaaataattatttttatgtgtttccttcccatctagcttcaagacaagcgccactgtgttaaccacagaacgaaagaaggtgaggctgtctgttacgaagatagctgcatctttggagagAAGTGTAGG #### Prpf19_ID3054_13 --> 2 - 0 Original Alignment ctCTTACCTGTGCACAGTTC-CACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG ggccctgtagaccactgattatactacatgttacaatgttattcatgcagccCTTACCTGTGCACAGTTCCCACCCTGATGGGCTCATCTTTGGAACTGGAACCATGGACTCCCAAATTAAGATTTGGGACCTAAAGgtaagtggacatatagacgcaaccggagggagtagtgggggggaattgat Alignment from CESAR ctCTTACCTGTGCACAGTTC-CACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG ggccctgtagaccactgattatactacatgttacaatgttattcatgcagccCTTACCTGTGCACAGTTCCCACCCTGATGGGCTCATCTTTGGAACTGGAACCATGGACTCCCAAATTAAGATTTGGGACCTAAAGgtaagtggacatatagacgcaaccggagggagtagtgggggggaattgat Alignment from Spaln_aa2Genome CTCTTACCTGTGCACAGTTC-CACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG ggccctgtagaccactgattatactacatgttacaatgttattcatgcagCCCTTACCTGTGCACAGTTCcCACCCTGATGGGCTCATCTTTGGAACTGGAACCATGGACTCCCAAATTAAGATTTGGGACCTAAAGgtaagtggacatatagacgcaaccggagggagtagtgggggggaattgat Alignment from Spaln_nt2Genome CTCTTACCTGTGCACAGTT-CCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG ggccctgtagaccactgattatactacatgttacaatgttattcatgcagCCCTTACCTGTGCACAGTTCCCACCCTGATGGGCTCATCTTTGGAACTGGAACCATGGACTCCCAAATTAAGATTTGGGACCTAAAGgtaagtggacatatagacgcaaccggagggagtagtgggggggaattgat Alignment from Pairagon CTCTTACCTGTGCACAGTT-CCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG ggccctgtagaccactgattatactacatgttacaatgttattcatgcagCCCTTACCTGTGCACAGTTCCCACCCTGATGGGCTCATCTTTGGAACTGGAACCATGGACTCCCAAATTAAGATTTGGGACCTAAAGgtaagtggacatatagacgcaaccggagggagtagtgggggggaattgat Alignment from Exonerate_protein2genome CTCTTACCTGTGCACAGTTC-CACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG ggccctgtagaccactgattatactacatgttacaatgttattcatgcagCCCTTACCTGTGCACAGTTCCCACCCTGATGGGCTCATCTTTGGAACTGGAACCATGGACTCCCAAATTAAGATTTGGGACCTAAAGgtaagtggacatatagacgcaaccggagggagtagtgggggggaattgat Alignment from Exonerate_coding2genome CTCTTACCTGTGCACAGTTC-CACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG ggccctgtagaccactgattatactacatgttacaatgttattcatgcagCCCTTACCTGTGCACAGTTCCCACCCTGATGGGCTCATCTTTGGAACTGGAACCATGGACTCCCAAATTAAGATTTGGGACCTAAAGgtaagtggacatatagacgcaaccggagggagtagtgggggggaattgat Alignment from GeneWise CTCTTACCTGTGCACAG-TTCCACCCTGATGGGCTCATCTTTGGAACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG ggccctgtagaccactgattatactacatgttacaatgttattcatgcagCCCTTACCTGTGCACAGTTCCCACCCTGATGGGCTCATCTTTGGAACTGGAACCATGGACTCCCAAATTAAGATTTGGGACCTAAAGgtaagtggacatatagacgcaaccggagggagtagtgggggggaattgat #### Pygm_ID1678_2 --> 0 - 0 Original Alignment AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAAC-ACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG ggaggtaaaaaattgagccacttctgtcgccacttctactttgcctgcagAGGATTTATTATCTGTCTTTGGAGTTCTACATGGGCCGGACACTACAAAACCACCATGGTAAATCTTGCCCTGGGGAATGCCTGTGATGAGGCCACTTACCAGgtaagggaattatataaggctgtgtggggagtgtcttgttatgttagcac Alignment from CESAR AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAAC-ACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG ggaggtaaaaaattgagccacttctgtcgccacttctactttgcctgcagAGGATTTATTATCTGTCTTTGGAGTTCTACATGGGCCGGACACTACAAAACCACCATGGTAAATCTTGCCCTGGGGAATGCCTGTGATGAGGCCACTTACCAGgtaagggaattatataaggctgtgtggggagtgtcttgttatgttagcac Alignment from Spaln_aa2Genome AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAAC-ACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG ggaggtaaaaaattgagccacttctgtcgccacttctactttgcctgcagAGGATTTATTATCTGTCTTTGGAGTTCTACATGGGCCGGACACTACAAAACcACCATGGTAAATCTTGCCCTGGGGAATGCCTGTGATGAGGCCACTTACCAGgtaagggaattatataaggctgtgtggggagtgtcttgttatgttagcac Alignment from Spaln_nt2Genome AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAA-CACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG ggaggtaaaaaattgagccacttctgtcgccacttctactttgcctgcagAGGATTTATTATCTGTCTTTGGAGTTCTACATGGGCCGGACACTACAAAACCACCATGGTAAATCTTGCCCTGGGGAATGCCTGTGATGAGGCCACTTACCAGgtaagggaattatataaggctgtgtggggagtgtcttgttatgttagcac Alignment from Pairagon AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAA-CACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG ggaggtaaaaaattgagccacttctgtcgccacttctactttgcctgcagAGGATTTATTATCTGTCTTTGGAGTTCTACATGGGCCGGACACTACAAAACCACCATGGTAAATCTTGCCCTGGGGAATGCCTGTGATGAGGCCACTTACCAGgtaagggaattatataaggctgtgtggggagtgtcttgttatgttagcac Alignment from Exonerate_protein2genome AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAAC-ACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG ggaggtaaaaaattgagccacttctgtcgccacttctactttgcctgcagAGGATTTATTATCTGTCTTTGGAGTTCTACATGGGCCGGACACTACAAAACCACCATGGTAAATCTTGCCCTGGGGAATGCCTGTGATGAGGCCACTTACCAGgtaagggaattatataaggctgtgtggggagtgtcttgttatgttagcac Alignment from Exonerate_coding2genome AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAAC-ACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG ggaggtaaaaaattgagccacttctgtcgccacttctactttgcctgcagAGGATTTATTATCTGTCTTTGGAGTTCTACATGGGCCGGACACTACAAAACCACCATGGTAAATCTTGCCCTGGGGAATGCCTGTGATGAGGCCACTTACCAGgtaagggaattatataaggctgtgtggggagtgtcttgttatgttagcac Alignment from GeneWise AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACACTGCAGAAC-ACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG ggaggtaaaaaattgagccacttctgtcgccacttctactttgcctgcagAGGATTTATTATCTGTCTTTGGAGTTCTACATGGGCCGGACACTACAAAACCACCATGGTAAATCTTGCCCTGGGGAATGCCTGTGATGAGGCCACTTACCAGgtaagggaattatataaggctgtgtggggagtgtcttgttatgttagcac #### Pygm_ID1684_8 --> 0 - 0 Original Alignment TTCTTTGAAGGGAAGGAGCTGCGGCTGAAG-CAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgctgttaatggttggctcttctctgggttcctccccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCCAGGAGTACTTGGTGGTGGCTGCCACCCTCCAAGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtacatttctggtccaaagtgtcttactctccctagcatcccatgacatg Alignment from CESAR TTCTTTGAAGGGAAGGAGCTGCGGCTGAAG-CAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgctgttaatggttggctcttctctgggttcctccccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCCAGGAGTACTTGGTGGTGGCTGCCACCCTCCAAGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtacatttctggtccaaagtgtcttactctccctagcatcccatgacatg Alignment from Spaln_aa2Genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAG-CAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgctgttaatggttggctcttctctgggttcctccccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGcCAGGAGTACTTGGTGGTGGCTGCCACCCTCCAAGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtacatttctggtccaaagtgtcttactctccctagcatcccatgacatg Alignment from Spaln_nt2Genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAG-CAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgctgttaatggttggctcttctctgggttcctccccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCCAGGAGTACTTGGTGGTGGCTGCCACCCTCCAAGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtacatttctggtccaaagtgtcttactctccctagcatcccatgacatg Alignment from Pairagon TTCTTTGAAGGGAAGGAGCTGCGGCTGAAG-CAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgctgttaatggttggctcttctctgggttcctccccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCCAGGAGTACTTGGTGGTGGCTGCCACCCTCCAAGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtacatttctggtccaaagtgtcttactctccctagcatcccatgacatg Alignment from Exonerate_protein2genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAG-CAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgctgttaatggttggctcttctctgggttcctccccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCCAGGAGTACTTGGTGGTGGCTGCCACCCTCCAAGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtacatttctggtccaaagtgtcttactctccctagcatcccatgacatg Alignment from Exonerate_coding2genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAG-CAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgctgttaatggttggctcttctctgggttcctccccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCCAGGAGTACTTGGTGGTGGCTGCCACCCTCCAAGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtacatttctggtccaaagtgtcttactctccctagcatcccatgacatg Alignment from GeneWise TTCTTTGAAGGGAAGGAGCTGCGGCTG-AAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgctgttaatggttggctcttctctgggttcctccccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCCAGGAGTACTTGGTGGTGGCTGCCACCCTCCAAGACATCATCCGACGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtacatttctggtccaaagtgtcttactctccctagcatcccatgacatg #### Pygm_ID1686_10 --> 0 - 0 Original Alignment GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTC-ATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtgaaggtcaactgaaatgaccttctgtccccacccacagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCTGTGCATCTCCATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtacgttagggacaatgagagaggagccccagcatgagggagcatatgta Alignment from CESAR GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTC-ATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtgaaggtcaactgaaatgaccttctgtccccacccacagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCTGTGCATCTCCATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtacgttagggacaatgagagaggagccccagcatgagggagcatatgta Alignment from Spaln_aa2Genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTC-ATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtgaaggtcaactgaaatgaccttctgtccccacccacagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCTGTGCATCTCcATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtacgttagggacaatgagagaggagccccagcatgagggagcatatgta Alignment from Spaln_nt2Genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCT-CATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtgaaggtcaactgaaatgaccttctgtccccacccacagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCTGTGCATCTCCATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtacgttagggacaatgagagaggagccccagcatgagggagcatatgta Alignment from Pairagon GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCT-CATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtgaaggtcaactgaaatgaccttctgtccccacccacagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCTGTGCATCTCCATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtacgttagggacaatgagagaggagccccagcatgagggagcatatgta Alignment from Exonerate_protein2genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTC-ATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtgaaggtcaactgaaatgaccttctgtccccacccacagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCTGTGCATCTCCATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtacgttagggacaatgagagaggagccccagcatgagggagcatatgta Alignment from Exonerate_coding2genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTC-ATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtgaaggtcaactgaaatgaccttctgtccccacccacagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCTGTGCATCTCCATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtacgttagggacaatgagagaggagccccagcatgagggagcatatgta Alignment from GeneWise GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCAC-CTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtgaaggtcaactgaaatgaccttctgtccccacccacagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCTGTGCATCTCCATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtacgttagggacaatgagagaggagccccagcatgagggagcatatgta #### Rab1b_ID845_3 --> 0 - 0 Original Alignment GATGACACTTAC-ACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT ctgtatgtcagttttgttgcctactcaggtttttcacacaaataccctagGATGATACTTACCACAGAGAGCTACATCAGCACCATTGGTGTGGATTTTAAGATACGAACCATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgtaggcttaagcctgttccagccgcctgttcgagacagctgactgaggtc Alignment from CESAR GATGACACTTAC-ACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT ctgtatgtcagttttgttgcctactcaggtttttcacacaaataccctagGATGATACTTACCACAGAGAGCTACATCAGCACCATTGGTGTGGATTTTAAGATACGAACCATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgtaggcttaagcctgttccagccgcctgttcgagacagctgactgaggtc Alignment from Spaln_aa2Genome GATGACACTTAC-ACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT ctgtatgtcagttttgttgcctactcaggtttttcacacaaataccctagGATGATACTTACcACAGAGAGCTACATCAGCACCATTGGTGTGGATTTTAAGATACGAACCATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgtaggcttaagcctgttccagccgcctgttcgagacagctgactgaggtc Alignment from Spaln_nt2Genome GATGACACTTAC-ACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT ctgtatgtcagttttgttgcctactcaggtttttcacacaaataccctagGATGATACTTACCACAGAGAGCTACATCAGCACCATTGGTGTGGATTTTAAGATACGAACCATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgtaggcttaagcctgttccagccgcctgttcgagacagctgactgaggtc Alignment from Pairagon GATGACACTTA-CACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT ctgtatgtcagttttgttgcctactcaggtttttcacacaaataccctagGATGATACTTACCACAGAGAGCTACATCAGCACCATTGGTGTGGATTTTAAGATACGAACCATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgtaggcttaagcctgttccagccgcctgttcgagacagctgactgaggtc Alignment from Exonerate_protein2genome GATGACACTTAC-ACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT ctgtatgtcagttttgttgcctactcaggtttttcacacaaataccctagGATGATACTTACCACAGAGAGCTACATCAGCACCATTGGTGTGGATTTTAAGATACGAACCATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgtaggcttaagcctgttccagccgcctgttcgagacagctgactgaggtc Alignment from Exonerate_coding2genome GATGACACTTAC-ACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT ctgtatgtcagttttgttgcctactcaggtttttcacacaaataccctagGATGATACTTACCACAGAGAGCTACATCAGCACCATTGGTGTGGATTTTAAGATACGAACCATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgtaggcttaagcctgttccagccgcctgttcgagacagctgactgaggtc Alignment from GeneWise GATGACACTTAC-ACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT ctgtatgtcagttttgttgcctactcaggtttttcacacaaataccctagGATGATACTTACCACAGAGAGCTACATCAGCACCATTGGTGTGGATTTTAAGATACGAACCATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgtaggcttaagcctgttccagccgcctgttcgagacagctgactgaggtc #### Rab3il1_ID2648_4 --> 0 - 0 Original Alignment GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAG-CAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG tgtccaggcttttttagtgagaactcctatgtgtttgctgctgtttccagGAAGCCCACAAGATGGTTCAGGAAGCAAACATGAAACCAGGCAACATCAGAAAAGCAGTTGAAGGAAGCTTGGGGCAAGgtaaggtctagccctgtgtgcctaaggcagccctgtgtgcctaaggcagt Alignment from CESAR GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAG-CAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG tgtccaggcttttttagtgagaactcctatgtgtttgctgctgtttccagGAAGCCCACAAGATGGTTCAGGAAGCAAACATGAAACCAGGCAACATCAGAAAAGCAGTTGAAGGAAGCTTGGGGCAAGgtaaggtctagccctgtgtgcctaaggcagccctgtgtgcctaaggcagt Alignment from Spaln_aa2Genome GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAG-CAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG tgtccaggcttttttagtgagaactcctatgtgtttgctgctgtttccagGAAGCCCACAAGATGGTTCAGGAAGCAAACATGAAAcCAGGCAACATCAGAAAAGCAGTTGAAGGAAGCTTGGGGCAAGgtaaggtctagccctgtgtgcctaaggcagccctgtgtgcctaaggcagt Alignment from Spaln_nt2Genome GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGC-AGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG tgtccaggcttttttagtgagaactcctatgtgtttgctgctgtttccagGAAGCCCACAAGATGGTTCAGGAAGCAAACATGAAACCAGGCAACATCAGAAAAGCAGTTGAAGGAAGCTTGGGGCAAGgtaaggtctagccctgtgtgcctaaggcagccctgtgtgcctaaggcagt Alignment from Pairagon GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAG-CAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG tgtccaggcttttttagtgagaactcctatgtgtttgctgctgtttccagGAAGCCCACAAGATGGTTCAGGAAGCAAACATGAAACCAGGCAACATCAGAAAAGCAGTTGAAGGAAGCTTGGGGCAAGgtaaggtctagccctgtgtgcctaaggcagccctgtgtgcctaaggcagt Alignment from Exonerate_protein2genome GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAG-CAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG tgtccaggcttttttagtgagaactcctatgtgtttgctgctgtttccagGAAGCCCACAAGATGGTTCAGGAAGCAAACATGAAACCAGGCAACATCAGAAAAGCAGTTGAAGGAAGCTTGGGGCAAGgtaaggtctagccctgtgtgcctaaggcagccctgtgtgcctaaggcagt Alignment from Exonerate_coding2genome GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAG-CAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG tgtccaggcttttttagtgagaactcctatgtgtttgctgctgtttccagGAAGCCCACAAGATGGTTCAGGAAGCAAACATGAAACCAGGCAACATCAGAAAAGCAGTTGAAGGAAGCTTGGGGCAAGgtaaggtctagccctgtgtgcctaaggcagccctgtgtgcctaaggcagt Alignment from GeneWise GAAGCTCACAAGATGGTTCGGGAAGCCAACATG-AAGCAGGCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG tgtccaggcttttttagtgagaactcctatgtgtttgctgctgtttccagGAAGCCCACAAGATGGTTCAGGAAGCAAACATGAAACCAGGCAACATCAGAAAAGCAGTTGAAGGAAGCTTGGGGCAAGgtaaggtctagccctgtgtgcctaaggcagccctgtgtgcctaaggcagt #### Rab3il1_ID2652_7 --> 0 - 2 Original Alignment CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACA-CTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCaa tctgatagtgatctgtcaccatctcaatgtctttctctcttccctcttagCTTTCAGCTCTGGTTCGAACTGCTGTAGAGGACAATACACTCACCATCGAGCCTGTAGCTTCACAGACACTTGCCTGCAGTGAAGGTGCCTAGTGTTGAGTGTAACAACACCaagtaagattaactgtctgggccatcaggctcaggggggcagtggaggtggg Alignment from CESAR CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACA-CTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCaa tctgatagtgatctgtcaccatctcaatgtctttctctcttccctcttagCTTTCAGCTCTGGTTCGAACTGCTGTAGAGGACAATACACTCACCATCGAGCCTGTAGCTTCACAGACACTTGCCTGCAGTGAAGGTGCCTAGTGTTGAGTGTAACAACACCaagtaagattaactgtctgggccatcaggctcaggggggcagtggaggtggg Alignment from Spaln_aa2Genome CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACTG-CCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tctgatagtgatctgtcaccatctcaatgtctttctctcttccctcttagCTTTCAGCTCTGGTTCGAACTGCTGTAGAGGACAATACACTCACCATCGAGCCTGTAGCTTCACAGACACTTgCCTGCAGTGAAGGTGCCTAGTGTTGAGTGTAACAACACCAAgtaagattaactgtctgggccatcaggctcaggggggcagtggaggtggg Alignment from Spaln_nt2Genome CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACACT-GCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tctgatagtgatctgtcaccatctcaatgtctttctctcttccctcttagCTTTCAGCTCTGGTTCGAACTGCTGTAGAGGACAATACACTCACCATCGAGCCTGTAGCTTCACAGACACTTGCCTGCAGTGAAGGTGCCTAGTGTTGAGTGTAACAACACCAAgtaagattaactgtctgggccatcaggctcaggggggcagtggaggtggg Alignment from Pairagon CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACAC-TGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tctgatagtgatctgtcaccatctcaatgtctttctctcttccctcttagCTTTCAGCTCTGGTTCGAACTGCTGTAGAGGACAATACACTCACCATCGAGCCTGTAGCTTCACAGACACTTGCCTGCAGTGAAGGTGCCTAGTGTTGAGTGTAACAACACCAAgtaagattaactgtctgggccatcaggctcaggggggcagtggaggtggg Alignment from Exonerate_protein2genome CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACA-CTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tctgatagtgatctgtcaccatctcaatgtctttctctcttccctcttagCTTTCAGCTCTGGTTCGAACTGCTGTAGAGGACAATACACTCACCATCGAGCCTGTAGCTTCACAGACACTTGCCTGCAGTGAAGGTGCCTAGTGTTGAGTGTAACAACACCAAgtaagattaactgtctgggccatcaggctcaggggggcagtggaggtggg Alignment from Exonerate_coding2genome CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACA-CTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tctgatagtgatctgtcaccatctcaatgtctttctctcttccctcttagCTTTCAGCTCTGGTTCGAACTGCTGTAGAGGACAATACACTCACCATCGAGCCTGTAGCTTCACAGACACTTGCCTGCAGTGAAGGTGCCTAGTGTTGAGTGTAACAACACCAAgtaagattaactgtctgggccatcaggctcaggggggcagtggaggtggg Alignment from GeneWise CTCTCAGCTCTGGTTCGGACTGCTGTGGAGGACAACACACTCACCATTGAGCCTGTGGCTTCACAGACA-CTGCCCGCTGTGAAGGTGCCCACTGTTGAGTGTAACAACACCAA tctgatagtgatctgtcaccatctcaatgtctttctctcttccctcttagCTTTCAGCTCTGGTTCGAACTGCTGTAGAGGACAATACACTCACCATCGAGCCTGTAGCTTCACAGACACTTGCCTGCAGTGAAGGTGCCTAGTGTTGAGTGTAACAACACCAAgtaagattaactgtctgggccatcaggctcaggggggcagtggaggtggg #### Rasgrp2_ID1707_6 --> 0 - 0 Original Alignment TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCT-CAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agggttaggaaattggccaacagttgctacttgctttcctcttcccttagTTTCATGACTATCACAGTTTTGTGACGCATGGCTGCACTGTAGACAACCCAGTCCTGGAGCGATTTATCTCTCTCTTCAACAGTGTGCCTCCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACAGCCACACAGCAGGCACTGGTCATTACCCACTTTGTGCATGTGGCAGAGgtcagcacctttccattgtgtccagaccagattctatgtacacatccaag Alignment from CESAR TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCT-CAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agggttaggaaattggccaacagttgctacttgctttcctcttcccttagTTTCATGACTATCACAGTTTTGTGACGCATGGCTGCACTGTAGACAACCCAGTCCTGGAGCGATTTATCTCTCTCTTCAACAGTGTGCCTCCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACAGCCACACAGCAGGCACTGGTCATTACCCACTTTGTGCATGTGGCAGAGgtcagcacctttccattgtgtccagaccagattctatgtacacatccaag Alignment from Spaln_aa2Genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCT-CAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agggttaggaaattggccaacagttgctacttgctttcctcttcccttagTTTCATGACTATCACAGTTTTGTGACGCATGGCTGCACTGTAGACAACCCAGTCCTGGAGCGATTTATCTCTCTCTTCAACAGTGTGCCTcCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACAGCCACACAGCAGGCACTGGTCATTACCCACTTTGTGCATGTGGCAGAGgtcagcacctttccattgtgtccagaccagattctatgtacacatccaag Alignment from Spaln_nt2Genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTC-AGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agggttaggaaattggccaacagttgctacttgctttcctcttcccttagTTTCATGACTATCACAGTTTTGTGACGCATGGCTGCACTGTAGACAACCCAGTCCTGGAGCGATTTATCTCTCTCTTCAACAGTGTGCCTCCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACAGCCACACAGCAGGCACTGGTCATTACCCACTTTGTGCATGTGGCAGAGgtcagcacctttccattgtgtccagaccagattctatgtacacatccaag Alignment from Pairagon TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCT-CAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agggttaggaaattggccaacagttgctacttgctttcctcttcccttagTTTCATGACTATCACAGTTTTGTGACGCATGGCTGCACTGTAGACAACCCAGTCCTGGAGCGATTTATCTCTCTCTTCAACAGTGTGCCTCCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACAGCCACACAGCAGGCACTGGTCATTACCCACTTTGTGCATGTGGCAGAGgtcagcacctttccattgtgtccagaccagattctatgtacacatccaag Alignment from Exonerate_protein2genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCT-CAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agggttaggaaattggccaacagttgctacttgctttcctcttcccttagTTTCATGACTATCACAGTTTTGTGACGCATGGCTGCACTGTAGACAACCCAGTCCTGGAGCGATTTATCTCTCTCTTCAACAGTGTGCCTCCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACAGCCACACAGCAGGCACTGGTCATTACCCACTTTGTGCATGTGGCAGAGgtcagcacctttccattgtgtccagaccagattctatgtacacatccaag Alignment from Exonerate_coding2genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCT-CAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agggttaggaaattggccaacagttgctacttgctttcctcttcccttagTTTCATGACTATCACAGTTTTGTGACGCATGGCTGCACTGTAGACAACCCAGTCCTGGAGCGATTTATCTCTCTCTTCAACAGTGTGCCTCCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACAGCCACACAGCAGGCACTGGTCATTACCCACTTTGTGCATGTGGCAGAGgtcagcacctttccattgtgtccagaccagattctatgtacacatccaag Alignment from GeneWise TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTC-TCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agggttaggaaattggccaacagttgctacttgctttcctcttcccttagTTTCATGACTATCACAGTTTTGTGACGCATGGCTGCACTGTAGACAACCCAGTCCTGGAGCGATTTATCTCTCTCTTCAACAGTGTGCCTCCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACAGCCACACAGCAGGCACTGGTCATTACCCACTTTGTGCATGTGGCAGAGgtcagcacctttccattgtgtccagaccagattctatgtacacatccaag #### Rbp4_ID7525_2 --> 0 - 0 Original Alignment GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCG-CTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggccctttgcccctgggtgttaacctacatttctaaccagGGCAGTCTCCGAGGTGAAATGGCATGGGTGTGGGCACCTTGTGCTCCTGTCAGCTCTGGGAGGTGGCAGTGCAGAGCATGAC------TTGAGCAGCTTTCGAGTTAAAGAAAACTTTGACAAGGCTCATgtaactatcagcccatttttcccaactttgcaggtgggaggtgaacctag Alignment from CESAR GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCG-CTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggccctttgcccctgggtgttaacctacatttctaaccagGGCAGTCTCCGAGGTGAAATGGCATGGGTGTGGGCACCTTGTGCTCCTGTCAGCTCTGGGAGGTGGCAGTGCAGAGCATGAC------TTGAGCAGCTTTCGAGTTAAAGAAAACTTTGACAAGGCTCATgtaactatcagcccatttttcccaactttgcaggtgggaggtgaacctag Alignment from Spaln_aa2Genome GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCG-CTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggccctttgcccctgggtgttaacctacatttctaaccagGGCAGTCTCCGAGGTGAAATGGCATGGGTGTGGGCAcCTTGTGCTCCTGTCAGCTCTGGGAGGTGGCAGTGCAGAGCATGAC------TTGAGCAGCTTTCGAGTTAAAGAAAACTTTGACAAGGCTCATgtaactatcagcccatttttcccaactttgcaggtgggaggtgaacctag Alignment from Spaln_nt2Genome GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCG-CTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggccctttgcccctgggtgttaacctacatttctaaccagGGCAGTCTCCGAGGTGAAATGGCATGGGTGTGGGCACCTTGTGCTCCTGTCAGCTCTGGGAGGTGGCAGTGCAGAGCATGACT------TGAGCAGCTTTCGAGTTAAAGAAAACTTTGACAAGGCTCATgtaactatcagcccatttttcccaactttgcaggtgggaggtgaacctag Alignment from Pairagon GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGC-TCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggccctttgcccctgggtgttaacctacatttctaaccagGGCAGTCTCCGAGGTGAAATGGCATGGGTGTGGGCACCTTGTGCTCCTGTCAGCTCTGGGAGGTGGCAGTGCAGAGCATGACT------TGAGCAGCTTTCGAGTTAAAGAAAACTTTGACAAGGCTCATgtaactatcagcccatttttcccaactttgcaggtgggaggtgaacctag Alignment from Exonerate_protein2genome GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCG-CTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggccctttgcccctgggtgttaacctacatttctaaccagGGCAGTCTCCGAGGTGAAATGGCATGGGTGTGGGCACCTTGTGCTCCTGTCAGCTCTGGGAGGTGGCAGTGCAGAGCATGAC------TTGAGCAGCTTTCGAGTTAAAGAAAACTTTGACAAGGCTCATgtaactatcagcccatttttcccaactttgcaggtgggaggtgaacctag Alignment from Exonerate_coding2genome aggtggccctggccctttgcccctgggtgttaacctacatttctaaccagggcagtctccgaggtgaaatggcatgggtgtgggcaccttgtgctcctgtcagctctgggaggtggcagtgcagagcatgacttgagcagctttcgagttaaagaaaactttgacaaggctcatgtaactatcagcccatttttcccaactttgcaggtgggaggtgaacctag Alignment from GeneWise GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGG-GCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT aggtggccctggccctttgcccctgggtgttaacctacatttctaaccagGGCAGTCTCCGAGGTGAAATGGCATGGGTGTGGGCACCTTGTGCTCCTGTCAGCTCTGGGAGGTGGCAGTGCAGAGCATGAC------TTGAGCAGCTTTCGAGTTAAAGAAAACTTTGACAAGGCTCATgtaactatcagcccatttttcccaactttgcaggtgggaggtgaacctag #### Rce1_ID575_7 --> 2 - 1 Original Alignment cgTTCCAGTTCTCCTACACCGCT-GTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAg ttgagggtatgtgggtgtgatcttgtggattgacattcttttgtttgcagcgTTTCAGTTCTCCTACACTGCTCGTCTTTGGTGCTTATACAGCCTTCCTCTTCATTCGCACAggtaagtcaccatctcatcatggaacaaggcaaaggtttgatcaccatctt Alignment from CESAR cgTTCCAGTTCTCCTACACCGCT-GTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAg ttgagggtatgtgggtgtgatcttgtggattgacattcttttgtttgcagcgTTTCAGTTCTCCTACACTGCTCGTCTTTGGTGCTTATACAGCCTTCCTCTTCATTCGCACAggtaagtcaccatctcatcatggaacaaggcaaaggtttgatcaccatctt Alignment from Spaln_aa2Genome CGTTCCAGTTCTCCTACACCGCT-GTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG ttgagggtatgtgggtgtgatcttgtggattgacattcttttgtttgcagCGTTTCAGTTCTCCTACACTGCTcGTCTTTGGTGCTTATACAGCCTTCCTCTTCATTCGCACAGgtaagtcaccatctcatcatggaacaaggcaaaggtttgatcaccatctt Alignment from Spaln_nt2Genome CGTTCCAGTTCTCCTACACCGCT-GTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG ttgagggtatgtgggtgtgatcttgtggattgacattcttttgtttgcagCGTTTCAGTTCTCCTACACTGCTCGTCTTTGGTGCTTATACAGCCTTCCTCTTCATTCGCACAGgtaagtcaccatctcatcatggaacaaggcaaaggtttgatcaccatctt Alignment from Pairagon CGTTCCAGTTCTCCTACACCGCT-GTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG ttgagggtatgtgggtgtgatcttgtggattgacattcttttgtttgcagCGTTTCAGTTCTCCTACACTGCTCGTCTTTGGTGCTTATACAGCCTTCCTCTTCATTCGCACAGgtaagtcaccatctcatcatggaacaaggcaaaggtttgatcaccatctt Alignment from Exonerate_protein2genome CGTTCCAGTTCTCCTACACCGCT-GTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG ttgagggtatgtgggtgtgatcttgtggattgacattcttttgtttgcagCGTTTCAGTTCTCCTACACTGCTCGTCTTTGGTGCTTATACAGCCTTCCTCTTCATTCGCACAGgtaagtcaccatctcatcatggaacaaggcaaaggtttgatcaccatctt Alignment from Exonerate_coding2genome CGTTCCAGTTCTCCTACACCGCT-GTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG ttgagggtatgtgggtgtgatcttgtggattgacattcttttgtttgcagCGTTTCAGTTCTCCTACACTGCTCGTCTTTGGTGCTTATACAGCCTTCCTCTTCATTCGCACAGgtaagtcaccatctcatcatggaacaaggcaaaggtttgatcaccatctt Alignment from GeneWise ttgagggtatgtgggtgtgatcttgtggattgacattcttttgtttgcagcgtttcagttctcctacactgctcgtctttggtgcttatacagccttcctcttcattcgcacaggtaagtcaccatctcatcatggaacaaggcaaaggtttgatcaccatctt #### Rce1_ID576_6 --> 2 - 1 Original Alignment CCCACTCTTTTTTGGAGTCg ccCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTG-GGAAGTATCTTCGTGTCTGCAg CCCACTCTTTTTTGGGGTTggtgggactttgttgttttttcctatcacagccCATTTTCACCACATTATTGAGCAGTTACGCTTCCGCCAGAGCAGTGTGCGGGAGCATCTTTGTGTCTACAggtaggtccctggaaatatactcagttgactaaggggacaaagggtagggt Alignment from CESAR CCCACTCTTTTTTGGAGTCg ccCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTG-GGAAGTATCTTCGTGTCTGCAg CCCACTCTTTTTTGGGGTTggtgagcctttgttgttttttcctatcacagccCATTTTCACCACATTATTGAGCAGTTACGCTTCCGCCAGAGCAGTGTGCGGGAGCATCTTTGTGTCTACAggtaggtccctggaaatatactcagttgactaaggggacaaagggtagggt Alignment from Spaln_aa2Genome CCCACTCTTTTTTGGAGTC------------------------------GCCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTG-GGAAGTATCTTCGTGTCTGCAG CCCACTCTTTTTTGGGGTTGGTGGGACTTTGTTGTTTTTTCCTATCACAGCCCATTTTCACCACATTATTGAGCAGTTACGCTTCCGCCAGAGCAGTGTGcGGGAGCATCTTTGTGTCTACAGgtaggtccctggaaatatactcagttgactaaggggacaaagggtagggt Alignment from Spaln_nt2Genome CTCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTG-GGAAGTATCTTCGTGTCTGCAG CTCTTTTTTGG----GgttggtgggactttgttgttttttcctatcacagCCCATTTTCACCACATTATTGAGCAGTTACGCTTCCGCCAGAGCAGTGTGCGGGAGCATCTTTGTGTCTACAGgtaggtccctggaaatatactcagttgactaaggggacaaagggtagggt Alignment from Pairagon CCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTG-GGAAGTATCTTCGTGTCTGCAG CCCACTCTTTTTTGGGGTTGgtgggactttgttgttttttcctatcacagCCCATTTTCACCACATTATTGAGCAGTTACGCTTCCGCCAGAGCAGTGTGCGGGAGCATCTTTGTGTCTACAGgtaggtccctggaaatatactcagttgactaaggggacaaagggtagggt Alignment from Exonerate_protein2genome CCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTG-GGAAGTATCTTCGTGTCTGCAG CCCACTCTTTTTTGGGGTTGgtgggactttgttgttttttcctatcacagCCCATTTTCACCACATTATTGAGCAGTTACGCTTCCGCCAGAGCAGTGTGCGGGAGCATCTTTGTGTCTACAGgtaggtccctggaaatatactcagttgactaaggggacaaagggtagggt Alignment from Exonerate_coding2genome CCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTG-GGAAGTATCTTCGTGTCTGCAG CCCACTCTTTTTTGGGGTTGgtgggactttgttgttttttcctatcacagCCCATTTTCACCACATTATTGAGCAGTTACGCTTCCGCCAGAGCAGTGTGCGGGAGCATCTTTGTGTCTACAGgtaggtccctggaaatatactcagttgactaaggggacaaagggtagggt Alignment from GeneWise CCCACTCTTTTTTGGAGTC------------------------------GCCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGT-GTGGGAAGTATCTTCGTGTCTGCAG CCCACTCTTTTTTGGGGTTGGTGGGACTTTGTTGTTTTTTCCTATCACAGCCCATTTTCACCACATTATTGAGCAGTTACGCTTCCGCCAGAGCAGTGTGCGGGAGCATCTTTGTGTCTACAGgtaggtccctggaaatatactcagttgactaaggggacaaagggtagggt #### Rce1_ID577_5 --> 2 - 1 Original Alignment ccCCTCGTTCTTGGGCCCGCTGC-CTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCg ccCATTTTCACCACATTATT aatagatatggaagtcagggctagcctactcttgctggtcctaaccgtagccCCTTGTTCGTGGGCTCGCTGCCCTCACAGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCACTGACAGGGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGGGGTTggtgagtctacaactttgccctctcttccagccCATTTTCACCACATTATT Alignment from CESAR ccCCTCGTTCTTGGGCCCGCTGC-CTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCg ccCATTTTCACCACATTATT aatagatatggaagtcagggctagcctactcttgctggtcctaaccgtagccCCTTGTTCGTGGGCTCGCTGCCCTCACAGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCACTGACAGGGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGGGGTTggtgagcctttgttgttttttcctatcacagccCATTTTCACCACATTATT Alignment from Spaln_aa2Genome CCCCTCGTTCTTGGGCCCGCTGC-CTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTC------------------------------GCCCATTTTCACCACATTATT aatagatatggaagtcagggctagcctactcttgctggtcctaaccgtagCCCCTTGTTCGTGGGCTCGCTGCcCTCACAGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCACTGACAGGGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGGGGTTGGTGAGTCTACAACTTTGCCCTCTCTTCCAGCCCATTTTCACCACATTATT Alignment from Spaln_nt2Genome CCCCTCGTTCTTGGGCCCGCTGCC-TCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATT aatagatatggaagtcagggctagcctactcttgctggtcctaaccgtagCCCCTTGTTCGTGGGCTCGCTGCCCTCACAGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCACTGACAGGGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGG----GgttggtgagtctacaactttgccctctcttccagCCCATTTTCACCACATTATT Alignment from Pairagon CCCCTCGTTCTTGGGCCCGCTG-CCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATT aatagatatggaagtcagggctagcctactcttgctggtcctaaccgtagCCCCTTGTTCGTGGGCTCGCTGCCCTCACAGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCACTGACAGGGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGGGGTTGgtgagtctacaactttgccctctcttccagCCCATTTTCACCACATTATT Alignment from Exonerate_protein2genome CCCCTCGTTCTTGGGCCCGCTGC-CTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATT aatagatatggaagtcagggctagcctactcttgctggtcctaaccgtagCCCCTTGTTCGTGGGCTCGCTGCCCTCACAGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCACTGACAGGGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGGGGTTGgtgagtctacaactttgccctctcttccagCCCATTTTCACCACATTATT Alignment from Exonerate_coding2genome CCCCTCGTTCTTGGGCCCGCTGC-CTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATT aatagatatggaagtcagggctagcctactcttgctggtcctaaccgtagCCCCTTGTTCGTGGGCTCGCTGCCCTCACAGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCACTGACAGGGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGGGGTTGgtgagtctacaactttgccctctcttccagCCCATTTTCACCACATTATT Alignment from GeneWise CCCCTCGTTCTTGGGCCCGCTGC-CTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGCATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTC------------------------------GCCCATTTTCACCACATTATT aatagatatggaagtcagggctagcctactcttgctggtcctaaccgtagCCCCTTGTTCGTGGGCTCGCTGCCCTCACAGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCACTGACAGGGGAACTGGTGTTCCGGGCATGCATGCTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCTGTGTTCACATGCCCACTCTTTTTTGGGGTTGGTGAGTCTACAACTTTGCCCTCTCTTCCAGCCCATTTTCACCACATTATT #### Rce1_ID579_3 --> 0 - 0 Original Alignment CCAGGCACATCACTG-CTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgctcgcaaaagcataaccaaataatgtgtgatgtaatttcagCCTGGAACATCACTGCCTCACCTTGATGGGTTTCAGGCTTGAGGGCATTTTCCCAGCAGCACTGCTGCCGCTGCTGCTAACTATGgtgagtcatgcttgatattttcactactctattgtaactagtgtaatgga Alignment from CESAR CCAGGCACATCACTG-CTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgctcgcaaaagcataaccaaataatgtgtgatgtaatttcagCCTGGAACATCACTGCCTCACCTTGATGGGTTTCAGGCTTGAGGGCATTTTCCCAGCAGCACTGCTGCCGCTGCTGCTAACTATGgtgagtcatgcttgatattttcactactctattgtaactagtgtaatgga Alignment from Spaln_aa2Genome CCAGGCACATCACTG-CTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgctcgcaaaagcataaccaaataatgtgtgatgtaatttcagCCTGGAACATCACTGcCTCACCTTGATGGGTTTCAGGCTTGAGGGCATTTTCCCAGCAGCACTGCTGCCGCTGCTGCTAACTATGgtgagtcatgcttgatattttcactactctattgtaactagtgtaatgga Alignment from Spaln_nt2Genome CCAGGCACATCACTGCTT-ACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgctcgcaaaagcataaccaaataatgtgtgatgtaatttcagCCTGGAACATCACTGCCTCACCTTGATGGGTTTCAGGCTTGAGGGCATTTTCCCAGCAGCACTGCTGCCGCTGCTGCTAACTATGgtgagtcatgcttgatattttcactactctattgtaactagtgtaatgga Alignment from Pairagon CCAGGCACATCACTG-CTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgctcgcaaaagcataaccaaataatgtgtgatgtaatttcagCCTGGAACATCACTGCCTCACCTTGATGGGTTTCAGGCTTGAGGGCATTTTCCCAGCAGCACTGCTGCCGCTGCTGCTAACTATGgtgagtcatgcttgatattttcactactctattgtaactagtgtaatgga Alignment from Exonerate_protein2genome CCAGGCACATCACTG-CTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgctcgcaaaagcataaccaaataatgtgtgatgtaatttcagCCTGGAACATCACTGCCTCACCTTGATGGGTTTCAGGCTTGAGGGCATTTTCCCAGCAGCACTGCTGCCGCTGCTGCTAACTATGgtgagtcatgcttgatattttcactactctattgtaactagtgtaatgga Alignment from Exonerate_coding2genome CCAGGCACATCACTG-CTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgctcgcaaaagcataaccaaataatgtgtgatgtaatttcagCCTGGAACATCACTGCCTCACCTTGATGGGTTTCAGGCTTGAGGGCATTTTCCCAGCAGCACTGCTGCCGCTGCTGCTAACTATGgtgagtcatgcttgatattttcactactctattgtaactagtgtaatgga Alignment from GeneWise CCAGGCACATCACTG-CTTACCTTGATGGGCTTCAGGCTGGAGGGCATTTTCCCAGCAGCGCTGCTGCCCCTGCTGCTAACTATG agaattttgctcgcaaaagcataaccaaataatgtgtgatgtaatttcagCCTGGAACATCACTGCCTCACCTTGATGGGTTTCAGGCTTGAGGGCATTTTCCCAGCAGCACTGCTGCCGCTGCTGCTAACTATGgtgagtcatgcttgatattttcactactctattgtaactagtgtaatgga #### Rcor2_ID2092_3 --> 2 - 0 Original Alignment ttGACAAGTACATTGCAATGGCCAAGGAGAAG-CATGGCTATAACATTGAGCAG gacttcaatagtagttggatggatgcctctgtgttatgtttactgtgtagttGACAAGTACATTGCAATGGCCAAAGAGAAGCCGTGGCTATAACATTGAGCAGgtaggtaagattttgagagatccttacgggtggaagtggggcctaccagg Alignment from CESAR ttGACAAGTACATTGCAATGGCCAAGGAGAAG-CATGGCTATAACATTGAGCAG gacttcaatagtagttggatggatgcctctgtgttatgtttactgtgtagttGACAAGTACATTGCAATGGCCAAAGAGAAGCCGTGGCTATAACATTGAGCAGgtaggtaagattttgagagatccttacgggtggaagtggggcctaccagg Alignment from Spaln_aa2Genome TTGACAAGTACATTGCAATGGCCAAGGAGAAG-CATGGCTATAACATTGAGCAG gacttcaatagtagttggatggatgcctctgtgttatgtttactgtgtagTTGACAAGTACATTGCAATGGCCAAAGAGAAGcCGTGGCTATAACATTGAGCAGgtaggtaagattttgagagatccttacgggtggaagtggggcctaccagg Alignment from Spaln_nt2Genome TTGACAAGTACATTGCAATGGCCAAGGAGAAGCA-TGGCTATAACATTGAGCAG gacttcaatagtagttggatggatgcctctgtgttatgtttactgtgtagTTGACAAGTACATTGCAATGGCCAAAGAGAAGCCGTGGCTATAACATTGAGCAGgtaggtaagattttgagagatccttacgggtggaagtggggcctaccagg Alignment from Pairagon TTGACAAGTACATTGCAATGGCCAAGGAGAAG-CATGGCTATAACATTGAGCAG gacttcaatagtagttggatggatgcctctgtgttatgtttactgtgtagTTGACAAGTACATTGCAATGGCCAAAGAGAAGCCGTGGCTATAACATTGAGCAGgtaggtaagattttgagagatccttacgggtggaagtggggcctaccagg Alignment from Exonerate_protein2genome TTGACAAGTACATTGCAATGGCCAAGGAGAAG-CATGGCTATAACATTGAGCAG gacttcaatagtagttggatggatgcctctgtgttatgtttactgtgtagTTGACAAGTACATTGCAATGGCCAAAGAGAAGCCGTGGCTATAACATTGAGCAGgtaggtaagattttgagagatccttacgggtggaagtggggcctaccagg Alignment from Exonerate_coding2genome TTGACAAGTACATTGCAATGGCCAAGGAGAAG-CATGGCTATAACATTGAGCAG gacttcaatagtagttggatggatgcctctgtgttatgtttactgtgtagTTGACAAGTACATTGCAATGGCCAAAGAGAAGCCGTGGCTATAACATTGAGCAGgtaggtaagattttgagagatccttacgggtggaagtggggcctaccagg Alignment from GeneWise TTGACAAGTACATTGCAATGGCCAAGGAGAAG-CATGGCTATAACATTGAGCAG gacttcaatagtagttggatggatgcctctgtgttatgtttactgtgtagTTGACAAGTACATTGCAATGGCCAAAGAGAAGCCGTGGCTATAACATTGAGCAGgtaggtaagattttgagagatccttacgggtggaagtggggcctaccagg #### Rcor2_ID2093_4 --> 0 - 0 Original Alignment GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAG-GTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG taatgtagcactggcatggccaatgcttatttttggggggcttgttttagGCACTCGGTATGCTTCTGTGGCATAAACATGATGTGGAGAAATCACTAGCTGACCTTGCCAATTTCACTCCCTTTCCTGATGAGTGGACAGTAGAAGATAAGCGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGTTTCCAGCGTATCCAGCAGATGgtaaggctgtaattggggccccttgaatactcctcagccctttagtcaga Alignment from CESAR GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAG-GTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG taatgtagcactggcatggccaatgcttatttttggggggcttgttttagGCACTCGGTATGCTTCTGTGGCATAAACATGATGTGGAGAAATCACTAGCTGACCTTGCCAATTTCACTCCCTTTCCTGATGAGTGGACAGTAGAAGATAAGCGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGTTTCCAGCGTATCCAGCAGATGgtaaggctgtaattggggccccttgaatactcctcagccctttagtcaga Alignment from Spaln_aa2Genome GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAG-GTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG taatgtagcactggcatggccaatgcttatttttggggggcttgttttagGCACTCGGTATGCTTCTGTGGCATAAACATGATGTGGAGAAATCACTAGCTGACCTTGCCAATTTCACTCCCTTTCCTGATGAGTGGACAGTAGAAGATAAGcGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGTTTCCAGCGTATCCAGCAGATGgtaaggctgtaattggggccccttgaatactcctcagccctttagtcaga Alignment from Spaln_nt2Genome GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAG-GTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG taatgtagcactggcatggccaatgcttatttttggggggcttgttttagGCACTCGGTATGCTTCTGTGGCATAAACATGATGTGGAGAAATCACTAGCTGACCTTGCCAATTTCACTCCCTTTCCTGATGAGTGGACAGTAGAAGATAAGCGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGTTTCCAGCGTATCCAGCAGATGgtaaggctgtaattggggccccttgaatactcctcagccctttagtcaga Alignment from Pairagon GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAG-GTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG taatgtagcactggcatggccaatgcttatttttggggggcttgttttagGCACTCGGTATGCTTCTGTGGCATAAACATGATGTGGAGAAATCACTAGCTGACCTTGCCAATTTCACTCCCTTTCCTGATGAGTGGACAGTAGAAGATAAGCGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGTTTCCAGCGTATCCAGCAGATGgtaaggctgtaattggggccccttgaatactcctcagccctttagtcaga Alignment from Exonerate_protein2genome GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAG-GTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG taatgtagcactggcatggccaatgcttatttttggggggcttgttttagGCACTCGGTATGCTTCTGTGGCATAAACATGATGTGGAGAAATCACTAGCTGACCTTGCCAATTTCACTCCCTTTCCTGATGAGTGGACAGTAGAAGATAAGCGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGTTTCCAGCGTATCCAGCAGATGgtaaggctgtaattggggccccttgaatactcctcagccctttagtcaga Alignment from Exonerate_coding2genome GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAG-GTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG taatgtagcactggcatggccaatgcttatttttggggggcttgttttagGCACTCGGTATGCTTCTGTGGCATAAACATGATGTGGAGAAATCACTAGCTGACCTTGCCAATTTCACTCCCTTTCCTGATGAGTGGACAGTAGAAGATAAGCGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGTTTCCAGCGTATCCAGCAGATGgtaaggctgtaattggggccccttgaatactcctcagccctttagtcaga Alignment from GeneWise GCACTCGGCATGCTTCTGTGGCATAAACACGATGTGGAGAAATCACTGGCTGACCTAGCCAACTTCACTCCCTTCCCTGATGAGTGGACGGTGGAGGACAAG-GTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGCTTCCAGCGGATCCAGCAGATG taatgtagcactggcatggccaatgcttatttttggggggcttgttttagGCACTCGGTATGCTTCTGTGGCATAAACATGATGTGGAGAAATCACTAGCTGACCTTGCCAATTTCACTCCCTTTCCTGATGAGTGGACAGTAGAAGATAAGCGTGCTGTTTGAACAGGCCTTTGGGTTCCATGGCAAGTGTTTCCAGCGTATCCAGCAGATGgtaaggctgtaattggggccccttgaatactcctcagccctttagtcaga #### Rcor2_ID2098_9 --> 0 - 1 Original Alignment GCTAATACCAAGTTCAACTCC-CGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAg ctttccttattttttgctttcgttgatgtctattattcttttcactgtagGCTAATACCAAGTTCAACTCCCCGCTGGACCACTGACGAGGAACTTCTAGCAGTTCAAggtgagccaggctattgtgagactcaagaactccggggacctttgggacct Alignment from CESAR GCTAATACCAAGTTCAACTCC-CGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAg ctttccttattttttgctttcgttgatgtctattattcttttcactgtagGCTAATACCAAGTTCAACTCCCCGCTGGACCACTGACGAGGAACTTCTAGCAGTTCAAggtgagccaggctattgtgagactcaagaactccggggacctttgggacct Alignment from Spaln_aa2Genome GCTAATACCAAGTTCAACTCC-CGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG ctttccttattttttgctttcgttgatgtctattattcttttcactgtagGCTAATACCAAGTTCAACTCCcCGCTGGACCACTGACGAGGAACTTCTAGCAGTTCAAGgtgagccaggctattgtgagactcaagaactccggggacctttgggacct Alignment from Spaln_nt2Genome GCTAATACCAAGTTCAACT-CCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG ctttccttattttttgctttcgttgatgtctattattcttttcactgtagGCTAATACCAAGTTCAACTCCCCGCTGGACCACTGACGAGGAACTTCTAGCAGTTCAAGgtgagccaggctattgtgagactcaagaactccggggacctttgggacct Alignment from Pairagon GCTAATACCAAGTTCAACT-CCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG ctttccttattttttgctttcgttgatgtctattattcttttcactgtagGCTAATACCAAGTTCAACTCCCCGCTGGACCACTGACGAGGAACTTCTAGCAGTTCAAGgtgagccaggctattgtgagactcaagaactccggggacctttgggacct Alignment from Exonerate_protein2genome GCTAATACCAAGTTCAACTCC-CGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG ctttccttattttttgctttcgttgatgtctattattcttttcactgtagGCTAATACCAAGTTCAACTCCCCGCTGGACCACTGACGAGGAACTTCTAGCAGTTCAAGgtgagccaggctattgtgagactcaagaactccggggacctttgggacct Alignment from Exonerate_coding2genome GCTAATACCAAGTTCAACTCC-CGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG ctttccttattttttgctttcgttgatgtctattattcttttcactgtagGCTAATACCAAGTTCAACTCCCCGCTGGACCACTGACGAGGAACTTCTAGCAGTTCAAGgtgagccaggctattgtgagactcaagaactccggggacctttgggacct Alignment from GeneWise GCTAATACCAAGTTCAAC-TCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAG ctttccttattttttgctttcgttgatgtctattattcttttcactgtagGCTAATACCAAGTTCAACTCCCCGCTGGACCACTGACGAGGAACTTCTAGCAGTTCAAGgtgagccaggctattgtgagactcaagaactccggggacctttgggacct #### Rela_ID1130_7 --> 2 - 1 Original Alignment ggGCCCCCAACACTGCCGAG-CTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAg tggtgggggctagagcccctataggtaccttgacccgatgtttcattcagggGCCCCCAACACTGCTGAGCCTTAAAATCTGCAGAGTAAACCGGAACTCTGGGAGCTGTCTTGGAGGGGATGAGATATTCCTACTGTGTGACAGGGTGCAAAAGggtaagtagtgaactacgcatagagaggggaggcggaaattggggtcaagg Alignment from CESAR ggGCCCCCAACACTGCCGAG-CTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAg tggtgggggctagagcccctataggtaccttgacccgatgtttcattcagggGCCCCCAACACTGCTGAGCCTTAAAATCTGCAGAGTAAACCGGAACTCTGGGAGCTGTCTTGGAGGGGATGAGATATTCCTACTGTGTGACAGGGTGCAAAAGggtaagtagtgaactacgcatagagaggggaggcggaaattggggtcaagg Alignment from Spaln_aa2Genome GCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG tggtgggggctagagcccctataggtaccttgacccgatgtttcattcaggggcccccaacactgctgagCCTTAAAATCTGCAGAGTAAACCGGAACTCTGGGAGCTGTCTTGGAGGGGATGAGATATTCCTACTGTGTGACAGGGTGCAAAAGGgtaagtagtgaactacgcatagagaggggaggcggaaattggggtcaagg Alignment from Spaln_nt2Genome GGGCCCCCAACACTGCCGAGC-TCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG tggtgggggctagagcccctataggtaccttgacccgatgtttcattcagGGGCCCCCAACACTGCTGAGCCTTAAAATCTGCAGAGTAAACCGGAACTCTGGGAGCTGTCTTGGAGGGGATGAGATATTCCTACTGTGTGACAGGGTGCAAAAGGgtaagtagtgaactacgcatagagaggggaggcggaaattggggtcaagg Alignment from Pairagon GGGCCCCCAACACTGCCGAG-CTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG tggtgggggctagagcccctataggtaccttgacccgatgtttcattcagGGGCCCCCAACACTGCTGAGCCTTAAAATCTGCAGAGTAAACCGGAACTCTGGGAGCTGTCTTGGAGGGGATGAGATATTCCTACTGTGTGACAGGGTGCAAAAGGgtaagtagtgaactacgcatagagaggggaggcggaaattggggtcaagg Alignment from Exonerate_protein2genome GGGCCCCCAACACTGCCGAG-CTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG tggtgggggctagagcccctataggtaccttgacccgatgtttcattcagGGGCCCCCAACACTGCTGAGCCTTAAAATCTGCAGAGTAAACCGGAACTCTGGGAGCTGTCTTGGAGGGGATGAGATATTCCTACTGTGTGACAGGGTGCAAAAGGgtaagtagtgaactacgcatagagaggggaggcggaaattggggtcaagg Alignment from Exonerate_coding2genome GGGCCCCCAACACTGCCGAG-CTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG tggtgggggctagagcccctataggtaccttgacccgatgtttcattcagGGGCCCCCAACACTGCTGAGCCTTAAAATCTGCAGAGTAAACCGGAACTCTGGGAGCTGTCTTGGAGGGGATGAGATATTCCTACTGTGTGACAGGGTGCAAAAGGgtaagtagtgaactacgcatagagaggggaggcggaaattggggtcaagg Alignment from GeneWise GCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATCTTCTTGCTGTGCGACAAGGTGCAGAAAG tggtgggggctagagcccctataggtaccttgacccgatgtttcattcaggggcccccaacactgctgagCCTTAAAATCTGCAGAGTAAACCGGAACTCTGGGAGCTGTCTTGGAGGGGATGAGATATTCCTACTGTGTGACAGGGTGCAAAAGGgtaagtagtgaactacgcatagagaggggaggcggaaattggggtcaagg #### Rin1_ID807_2 --> 1 - 0 Original Alignment gCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTG-CGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggaccgggagatggggttgcccctaatctcctgttgtttttttaggCCCTCCACAGACCCACTGTATGACACACCTGATACAAGAGGTGTGCAGGCCGGTGGGTCACAACAGCCAGCATGTACAGTGAGCCTCCATGAGCGGCTCTTGATCACACGTCCTGTGTGGTTACGGCTCCCGGGCCAATGCAGCTGCTGCACTGCATGTGCTAAGGACAGAGCCTCCAGGGgtaatgcatcttacttgccagttggtcaaatccaagcctgattgggacgg Alignment from CESAR gCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTG-CGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggaccgggagatggggttgcccctaatctcctgttgtttttttaggCCCTCCACAGACCCACTGTATGACACACCTGATACAAGAGGTGTGCAGGCCGGTGGGTCACAACAGCCAGCATGTACAGTGAGCCTCCATGAGCGGCTCTTGATCACACGTCCTGTGTGGTTACGGCTCCCGGGCCAATGCAGCTGCTGCACTGCATGTGCTAAGGACAGAGCCTCCAGGGgtaatgcatcttacttgccagttggtcaaatccaagcctgattgggacgg Alignment from Spaln_aa2Genome GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTG-CGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggaccgggagatggggttgcccctaatctcctgttgtttttttagGCCCTCCACAGACCCACTGTATGACACACCTGATACAAGAGGTGTGCAGGCCGGTGGGTCACAACAGCCAGCATGTACAGTGAGCCTCCATGAGCGGCTCTTGATCACACGTCCTGTGTGGTTACGGCTCcCGGGCCAATGCAGCTGCTGCACTGCATGTGCTAAGGACAGAGCCTCCAGGGgtaatgcatcttacttgccagttggtcaaatccaagcctgattgggacgg Alignment from Spaln_nt2Genome GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGC-GGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggaccgggagatggggttgcccctaatctcctgttgtttttttagGCCCTCCACAGACCCACTGTATGACACACCTGATACAAGAGGTGTGCAGGCCGGTGGGTCACAACAGCCAGCATGTACAGTGAGCCTCCATGAGCGGCTCTTGATCACACGTCCTGTGTGGTTACGGCTCCCGGGCCAATGCAGCTGCTGCACTGCATGTGCTAAGGACAGAGCCTCCAGGGgtaatgcatcttacttgccagttggtcaaatccaagcctgattgggacgg Alignment from Pairagon GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCT-GCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggaccgggagatggggttgcccctaatctcctgttgtttttttagGCCCTCCACAGACCCACTGTATGACACACCTGATACAAGAGGTGTGCAGGCCGGTGGGTCACAACAGCCAGCATGTACAGTGAGCCTCCATGAGCGGCTCTTGATCACACGTCCTGTGTGGTTACGGCTCCCGGGCCAATGCAGCTGCTGCACTGCATGTGCTAAGGACAGAGCCTCCAGGGgtaatgcatcttacttgccagttggtcaaatccaagcctgattgggacgg Alignment from Exonerate_protein2genome GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTG-CGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggaccgggagatggggttgcccctaatctcctgttgtttttttagGCCCTCCACAGACCCACTGTATGACACACCTGATACAAGAGGTGTGCAGGCCGGTGGGTCACAACAGCCAGCATGTACAGTGAGCCTCCATGAGCGGCTCTTGATCACACGTCCTGTGTGGTTACGGCTCCCGGGCCAATGCAGCTGCTGCACTGCATGTGCTAAGGACAGAGCCTCCAGGGgtaatgcatcttacttgccagttggtcaaatccaagcctgattgggacgg Alignment from Exonerate_coding2genome GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTG-CGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggaccgggagatggggttgcccctaatctcctgttgtttttttagGCCCTCCACAGACCCACTGTATGACACACCTGATACAAGAGGTGTGCAGGCCGGTGGGTCACAACAGCCAGCATGTACAGTGAGCCTCCATGAGCGGCTCTTGATCACACGTCCTGTGTGGTTACGGCTCCCGGGCCAATGCAGCTGCTGCACTGCATGTGCTAAGGACAGAGCCTCCAGGGgtaatgcatcttacttgccagttggtcaaatccaagcctgattgggacgg Alignment from GeneWise GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAGGCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAG-CTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG gcccaggaccgggagatggggttgcccctaatctcctgttgtttttttagGCCCTCCACAGACCCACTGTATGACACACCTGATACAAGAGGTGTGCAGGCCGGTGGGTCACAACAGCCAGCATGTACAGTGAGCCTCCATGAGCGGCTCTTGATCACACGTCCTGTGTGGTTACGGCTCCCGGGCCAATGCAGCTGCTGCACTGCATGTGCTAAGGACAGAGCCTCCAGGGgtaatgcatcttacttgccagttggtcaaatccaagcctgattgggacgg #### Rin1_ID809_4 --> 2 - 2 Original Alignment gtGTCTCTTTGGAGGGCTCAGAGCTCATG-TTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCag tacatgaatggggacctcaatgagatagggcattctttactgtttgacaggtATCTCTTTGGAGGTCTCGGAACTCATGCTTCCAGGACCTCGTACAACTCATC------TATTGTCGTACCaggtgattctacctgtgggcacctgccgagctttcaagcccactcactgcac Alignment from CESAR gtGTCTCTTTGGAGGGCTCAGAGCTCATG-TTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCag tacatgaatggggacctcaatgagatagggcattctttactgtttgacaggtATCTCTTTGGAGGTCTCGGAACTCATGCTTCCAGGACCTCGTACAACTCATC------TATTGTCGTACCaggtgattctacctgtgggcacctgccgagctttcaagcccactcactgcac Alignment from Spaln_aa2Genome GTGTCTCTTTGGAGGGCTCAGAGCTCATG-TTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG tacatgaatggggacctcaatgagatagggcattctttactgtttgacagGTATCTCTTTGGAGGTCTCGGAACTCATGcTTCCAGGACCTCGTACAACTCATC------TATTGTCGTACCAGgtgattctacctgtgggcacctgccgagctttcaagcccactcactgcac Alignment from Spaln_nt2Genome GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTC-CAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG tacatgaatggggacctcaatgagatagggcattctttactgtttgacagGTATCTCTTTGGAGGTCTCGGAACTCATGCTTCCAGGACCTCGTACAACTCATC------TATTGTCGTACCAGgtgattctacctgtgggcacctgccgagctttcaagcccactcactgcac Alignment from Pairagon GTGTCTCTTTGGAGGGCTCAGAGCTCATG-TTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG tacatgaatggggacctcaatgagatagggcattctttactgtttgacagGTATCTCTTTGGAGGTCTCGGAACTCATGCTTCCAGGACCTCGTACAACTCATC------TATTGTCGTACCAGgtgattctacctgtgggcacctgccgagctttcaagcccactcactgcac Alignment from Exonerate_protein2genome GTGTCTCTTTGGAGGGCTCAGAGCTCATG-TTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG tacatgaatggggacctcaatgagatagggcattctttactgtttgacagGTATCTCTTTGGAGGTCTCGGAACTCATGCTTCCAGGACCTCGTACAACTCATC------TATTGTCGTACCAGgtgattctacctgtgggcacctgccgagctttcaagcccactcactgcac Alignment from Exonerate_coding2genome tacatgaatggggacctcaatgagatagggcattctttactgtttgacaggtatctctttggaggtctcggaactcatgcttccaggacctcgtacaactcatctattgtcgtaccaggtgattctacctgtgggcacctgccgagctttcaagcccactcactgcac Alignment from GeneWise GTGTCTCTTTGGAGGGCTCAGAGCTC-ATGTTCCAGGACCTGGTGCAGCTCATCTGTGGATACTGCCGTACCAG tacatgaatggggacctcaatgagatagggcattctttactgtttgacagGTATCTCTTTGGAGGTCTCGGAACTCATGCTTCCAGGACCTCGTACAACTCATC------TATTGTCGTACCAGgtgattctacctgtgggcacctgccgagctttcaagcccactcactgcac #### Rin1_ID810_5 --> 1 - 1 Original Alignment aGCCATTCATCAGGCAGCC-ACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGg cttgctccctggagccatttcattaggctggtgtgatgaatttatttcagaGCAATTCATCAGGCAGCCCACCCACAAAGAGCTAGAGGCTATCTCCCATCTGGGCATGggtgagcgtatcctgtagccttttatataagacatgcggaggttaattggt Alignment from CESAR aGCCATTCATCAGGCAGCC-ACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGg cttgctccctggagccatttcattaggctggtgtgatgaatttatttcagaGCAATTCATCAGGCAGCCCACCCACAAAGAGCTAGAGGCTATCTCCCATCTGGGCATGggtgagcgtatcctgtagccttttatataagacatgcggaggttaattggt Alignment from Spaln_aa2Genome AGCCATTCATCAGGCAGCC-ACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG cttgctccctggagccatttcattaggctggtgtgatgaatttatttcagAGCAATTCATCAGGCAGCCcACCCACAAAGAGCTAGAGGCTATCTCCCATCTGGGCATGGgtgagcgtatcctgtagccttttatataagacatgcggaggttaattggt Alignment from Spaln_nt2Genome AGCCATTCATCAGGCAG-CCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG cttgctccctggagccatttcattaggctggtgtgatgaatttatttcagAGCAATTCATCAGGCAGCCCACCCACAAAGAGCTAGAGGCTATCTCCCATCTGGGCATGGgtgagcgtatcctgtagccttttatataagacatgcggaggttaattggt Alignment from Pairagon AGCCATTCATCAGGCAG-CCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG cttgctccctggagccatttcattaggctggtgtgatgaatttatttcagAGCAATTCATCAGGCAGCCCACCCACAAAGAGCTAGAGGCTATCTCCCATCTGGGCATGGgtgagcgtatcctgtagccttttatataagacatgcggaggttaattggt Alignment from Exonerate_protein2genome AGCCATTCATCAGGCAGCC-ACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG cttgctccctggagccatttcattaggctggtgtgatgaatttatttcagAGCAATTCATCAGGCAGCCCACCCACAAAGAGCTAGAGGCTATCTCCCATCTGGGCATGGgtgagcgtatcctgtagccttttatataagacatgcggaggttaattggt Alignment from Exonerate_coding2genome AGCCATTCATCAGGCAGCC-ACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG cttgctccctggagccatttcattaggctggtgtgatgaatttatttcagAGCAATTCATCAGGCAGCCCACCCACAAAGAGCTAGAGGCTATCTCCCATCTGGGCATGGgtgagcgtatcctgtagccttttatataagacatgcggaggttaattggt Alignment from GeneWise AGCCATTCATCAGGCA-GCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG cttgctccctggagccatttcattaggctggtgtgatgaatttatttcagAGCAATTCATCAGGCAGCCCACCCACAAAGAGCTAGAGGCTATCTCCCATCTGGGCATGGgtgagcgtatcctgtagccttttatataagacatgcggaggttaattggt #### Rin1_ID811_6 --> 2 - 1 Original Alignment agTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGT-CCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGg cctaaaatcaactatgagcacccctcccactatatgtcttactgttttagagTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCTGAAGCCTCACCCATCCCTCAGCTGAAGGCTCGCTCCCCTCAGGACCTGGCCCAGGGGTCTGGGGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTGGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCCTGTCCCTACCTGCTGTACCTCCTCCCCCTGTCCATGTGCTTCCAGGGACATCTTCCAGCCAAACGGAACGACTACCC---CAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGTATCATGTGCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTTCAGGAAGTGGACTGTTGCTCTCCTAGCAGTTCAGAAGAGGAAGGCTCTTCAGGAAGCCCTACAACCTCACCACGCCTAAGCCGACCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCAGCCACAACGCTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACCCAAGTTCAGGCGGGACCCTGAGCCCAGGGAATTCCAGGGCATCCGAGAGGCCCTAAGTCGGGCACGAGCCATGCTGAGTGCAGAGCTGGGGCCCGAGAAGCTACTGCCGCCAGAGTGGCTTggtaggtcctttcaagggtatggtttcgcacaaactcccctaaccctgcca Alignment from CESAR agTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCC-GAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGg cctaaaatcaactatgagcacccctcccactatatgtcttactgttttagagTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCTGAAGCCTCACCCATCCCTCAGCTGAAGGCTCGCTCCCCTCAGGACCTGGCCCAGGGGTCTGGGGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTGGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCCTGTCCCTACCTGCTGTACCTCCTCCCCCTGTCCATGTGCTTCCAGGGACATCTTCCAGCCAAACGGAACGACTACCC---CAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGTATCATGTGCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTTCAGGAAGTGGACTGTTGCTCTCCTAGCAGTTCAGAAGAGGAAGGCTCTTCAGGAAGCCCTACAACCTCACCACGCCTAAGCCGACCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCAGCCACAACGCTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACCCAAGTTCAGGCGGGACCCTGAGCCCAGGGAATTCCAGGGCATCCGAGAGGCCCTAAGTCGGGCACGAGCCATGCTGAGTGCAGAGCTGGGGCCCGAGAAGCTACTGCCGCCAGAGTGGCTTggtaggtcctttcaagggtatggtttcgcacaaactcccctaactttatgc Alignment from Spaln_aa2Genome AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGT-CCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG cctaaaatcaactatgagcacccctcccactatatgtcttactgttttagAGTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCTGAAGCCTCACCCATCCCTCAGCTGAAGGCTCGCTCCCCTCAGGACCTGGCCCAGGGGTCTGGGGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTGGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCCTGTCCCTACCTGCTGTACCTCCTCCCCCTGTCCATGTGCTTCCAGGGACATCTTCCAGCCAAACGGAACGACTA---CCCCAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGTATCATGTGCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTTCAGGAAGTGGACTGTTGCTCTCCTAGCAGTTCAGAAGAGGAAGGCTCTTCAGGAAGCCCTACAACCTCACCACGCCTAAGCCGACCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCAGCCACAACGCTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACCCAAGTTCAGGCGGGAcCCTGAGCCCAGGGAATTCCAGGGCATCCGAGAGGCCCTAAGTCGGGCACGAGCCATGCTGAGTGCAGAGCTGGGGCCCGAGAAGCTACTGCCGCCAGAGTGGCTTGgtaggtcctttcaagggtatggtttcgcacaaactcccctaaccctgcca Alignment from Spaln_nt2Genome AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCC-GAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG cctaaaatcaactatgagcacccctcccactatatgtcttactgttttagAGTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCTGAAGCCTCACCCATCCCTCAGCTGAAGGCTCGCTCCCCTCAGGACCTGGCCCAGGGGTCTGGGGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTGGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCCTGTCCCTACCTGCTGTACCTCCTCCCCCTGTCCATGTGCTTCCAGGGACATCTTCCAGCCAAACGGAACGACTACCC---CAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGTATCATGTGCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTTCAGGAAGTGGACTGTTGCTCTCCTAGCAGTTCAGAAGAGGAAGGCTCTTCAGGAAGCCCTACAACCTCACCACGCCTAAGCCGACCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCAGCCACAACGCTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACCCAAGTTCAGGCGGGACCCTGAGCCCAGGGAATTCCAGGGCATCCGAGAGGCCCTAAGTCGGGCACGAGCCATGCTGAGTGCAGAGCTGGGGCCCGAGAAGCTACTGCCGCCAGAGTGGCTTGgtaggtcctttcaagggtatggtttcgcacaaactcccctaaccctgcca Alignment from Pairagon AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCC-GAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG cctaaaatcaactatgagcacccctcccactatatgtcttactgttttagAGTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCTGAAGCCTCACCCATCCCTCAGCTGAAGGCTCGCTCCCCTCAGGACCTGGCCCAGGGGTCTGGGGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTGGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCCTGTCCCTACCTGCTGTACCTCCTCCCCCTGTCCATGTGCTTCCAGGGACATCTTCCAGCCAAACGGAACGACTACCC---CAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGTATCATGTGCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTTCAGGAAGTGGACTGTTGCTCTCCTAGCAGTTCAGAAGAGGAAGGCTCTTCAGGAAGCCCTACAACCTCACCACGCCTAAGCCGACCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCAGCCACAACGCTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACCCAAGTTCAGGCGGGACCCTGAGCCCAGGGAATTCCAGGGCATCCGAGAGGCCCTAAGTCGGGCACGAGCCATGCTGAGTGCAGAGCTGGGGCCCGAGAAGCTACTGCCGCCAGAGTGGCTTGgtaggtcctttcaagggtatggtttcgcacaaactcccctaaccctgcca Alignment from Exonerate_protein2genome AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGT-CCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG cctaaaatcaactatgagcacccctcccactatatgtcttactgttttagAGTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCTGAAGCCTCACCCATCCCTCAGCTGAAGGCTCGCTCCCCTCAGGACCTGGCCCAGGGGTCTGGGGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTGGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCCTGTCCCTACCTGCTGTACCTCCTCCCCCTGTCCATGTGCTTCCAGGGACATCTTCCAGCCAAACGGAACGACTA---CCCCAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGTATCATGTGCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTTCAGGAAGTGGACTGTTGCTCTCCTAGCAGTTCAGAAGAGGAAGGCTCTTCAGGAAGCCCTACAACCTCACCACGCCTAAGCCGACCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCAGCCACAACGCTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACCCAAGTTCAGGCGGGACCCTGAGCCCAGGGAATTCCAGGGCATCCGAGAGGCCCTAAGTCGGGCACGAGCCATGCTGAGTGCAGAGCTGGGGCCCGAGAAGCTACTGCCGCCAGAGTGGCTTGgtaggtcctttcaagggtatggtttcgcacaaactcccctaaccctgcca Alignment from Exonerate_coding2genome AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGT-CCCGAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG cctaaaatcaactatgagcacccctcccactatatgtcttactgttttagAGTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCTGAAGCCTCACCCATCCCTCAGCTGAAGGCTCGCTCCCCTCAGGACCTGGCCCAGGGGTCTGGGGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTGGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCCTGTCCCTACCTGCTGTACCTCCTCCCCCTGTCCATGTGCTTCCAGGGACATCTTCCAGCCAAACGGAACGACTA---CCCCAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGTATCATGTGCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTTCAGGAAGTGGACTGTTGCTCTCCTAGCAGTTCAGAAGAGGAAGGCTCTTCAGGAAGCCCTACAACCTCACCACGCCTAAGCCGACCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCAGCCACAACGCTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACCCAAGTTCAGGCGGGACCCTGAGCCCAGGGAATTCCAGGGCATCCGAGAGGCCCTAAGTCGGGCACGAGCCATGCTGAGTGCAGAGCTGGGGCCCGAGAAGCTACTGCCGCCAGAGTGGCTTGgtaggtcctttcaagggtatggtttcgcacaaactcccctaaccctgcca Alignment from GeneWise AGTTCTGGAGCTCCTCACTCAACACCAAGGACCAACAGAGGCCTTCGGAAGCCCCACCCATACCCCGGCTGAAGGCTCGCTCCCCTCAAGAGCTGGATCAGGGCACTGGTGCTGCCCTCTGCTTCTTCAACCCCCTCTTCCCCGGGGATCTGGGCCCCACCAAACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCCACCGAGACCTCCAGCCCTCTGTCTCCACCTGCTGTGCCGCCTCCCCCAGTCCCGGTGCTTCCAGGGACATCTTCCAGCCAAACGGAAAGACTGCCCCCTCGACAGCTGCTGCAGAGGGAGAGCTCAGTGGGATATCGTGTGCCAGGAAGTGCTGCCAGCCCTTGTCTTCCTCCCCTACCTTCCCTTCAGGAGGTGGACTGCTGCTCTCCCAGCAGCTCAGAGGAGGAGGGCTCTTCAGGAAGCCCTACAACCTCCCCACGCCTAAGCCGCCCAAGGCACCGGCGGCCTCTGCTTCGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTGGCACCAGAGAGGCAGGTGGGCCGGGCAGCCACAATGCTAATGCAAAACCGATACACAGCCGTGGGTCAGCTAGTGCAGGACCTACTGACCCAGGTTCGGGCTGGTCCC-GAGCCCCGGGAGTTGCAGGGCATCCGCCAGGCCCTAAGTCGGGCCCGGGCCATGCTGAGCGCAGAGCTGGGCCCTGAGAAGCTGCTACCACCAGAGCGGCTGG cctaaaatcaactatgagcacccctcccactatatgtcttactgttttagAGTTCTGGAGCTCTTCACTGAATACCAAGGACCAACAGAGACCTTCTGAAGCCTCACCCATCCCTCAGCTGAAGGCTCGCTCCCCTCAGGACCTGGCCCAGGGGTCTGGGGCTGCCCTCTGCTTCTTCAACCCTCTCTTATCAGGGGATCTGGGCCCCACTAGACGAGAGAAATTCAAGAGGAGTTTCAAAGTGCGAGTGTCAACTGATACCTCCAGCCCCCTGTCCCTACCTGCTGTACCTCCTCCCCCTGTCCATGTGCTTCCAGGGACATCTTCCAGCCAAACGGAACGACTACCC---CAACAGTTGCAGCAGAGGGAAGGCTCAGTGGGGTATCATGTGCCAGGAAGTGCTGCCAGCCCATGTCTTCCTCCGCTGCCATCCCTTCAGGAAGTGGACTGTTGCTCTCCTAGCAGTTCAGAAGAGGAAGGCTCTTCAGGAAGCCCTACAACCTCACCACGCCTAAGCCGACCAAGGCAGCGGCAACCTCTACTCAGGTCCATGAGTTCTGCTTTCTGCTCTCTGCTAATACCAGAACGGCAGGTGGGCCGGGCAGCCACAACGCTAATGCAAAACCGATGCACAGTTGTGGGTCAGCTGGTTCAAGACACCCTGACCCAAGTTCAGGCGGGACCCTGAGCCCAGGGAATTCCAGGGCATCCGAGAGGCCCTAAGTCGGGCACGAGCCATGCTGAGTGCAGAGCTGGGGCCCGAGAAGCTACTGCCGCCAGAGTGGCTTGgtaggtcctttcaagggtatggtttcgcacaaactcccctaaccctgcca #### Rin1_ID812_7 --> 2 - 1 Original Alignment aaTTGGTCCTGGAGAAGTCC-CTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAg gggtatggtttcgcacaaactcccctaactttatgcgttctcttttccagaaTTGGTCCTGGAGAAGTCCCCTGCATCGCTCAGTTCTCAAACCACTTCGACCCATCCTGGCTGCTCGCCTACGGCACCGGCTTTCTGCTGATGGTTCCCTTGGCCGCCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGGGCCTTTGGGCCCCACCTGACTCTTTCTTCTCCGGTGGAGACAGAACAGGTGCGTCAGAAGCTTCTACAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTTAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAggtaggagccgcccatcttctcctgtaccactctgctagagtatgagtgat Alignment from CESAR aaTTGGTCCTGGAGAAGTCC-CTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAg gggtatggtttcgcacaaactcccctaactttatgcgttctcttttccagaaTTGGTCCTGGAGAAGTCCCCTGCATCGCTCAGTTCTCAAACCACTTCGACCCATCCTGGCTGCTCGCCTACGGCACCGGCTTTCTGCTGATGGTTCCCTTGGCCGCCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGGGCCTTTGGGCCCCACCTGACTCTTTCTTCTCCGGTGGAGACAGAACAGGTGCGTCAGAAGCTTCTACAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTTAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAggtaggagccgcccatcttctcctgtaccactctgctagagtatgagtgat Alignment from Spaln_aa2Genome AATTGGTCCTGGAGAAGTCC-CTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gggtatggtttcgcacaaactcccctaactttatgcgttctcttttccagAATTGGTCCTGGAGAAGTCCcCTGCATCGCTCAGTTCTCAAACCACTTCGACCCATCCTGGCTGCTCGCCTACGGCACCGGCTTTCTGCTGATGGTTCCCTTGGCCGCCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGGGCCTTTGGGCCCCACCTGACTCTTTCTTCTCCGGTGGAGACAGAACAGGTGCGTCAGAAGCTTCTACAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTTAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAGgtaggagccgcccatcttctcctgtaccactctgctagagtatgagtgat Alignment from Spaln_nt2Genome AATTGGTCCTGGAGAAGT-CCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gggtatggtttcgcacaaactcccctaactttatgcgttctcttttccagAATTGGTCCTGGAGAAGTCCCCTGCATCGCTCAGTTCTCAAACCACTTCGACCCATCCTGGCTGCTCGCCTACGGCACCGGCTTTCTGCTGATGGTTCCCTTGGCCGCCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGGGCCTTTGGGCCCCACCTGACTCTTTCTTCTCCGGTGGAGACAGAACAGGTGCGTCAGAAGCTTCTACAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTTAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAGgtaggagccgcccatcttctcctgtaccactctgctagagtatgagtgat Alignment from Pairagon AATTGGTCCTGGAGAAGT-CCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gggtatggtttcgcacaaactcccctaactttatgcgttctcttttccagAATTGGTCCTGGAGAAGTCCCCTGCATCGCTCAGTTCTCAAACCACTTCGACCCATCCTGGCTGCTCGCCTACGGCACCGGCTTTCTGCTGATGGTTCCCTTGGCCGCCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGGGCCTTTGGGCCCCACCTGACTCTTTCTTCTCCGGTGGAGACAGAACAGGTGCGTCAGAAGCTTCTACAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTTAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAGgtaggagccgcccatcttctcctgtaccactctgctagagtatgagtgat Alignment from Exonerate_protein2genome AATTGGTCCTGGAGAAGTCC-CTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gggtatggtttcgcacaaactcccctaactttatgcgttctcttttccagAATTGGTCCTGGAGAAGTCCCCTGCATCGCTCAGTTCTCAAACCACTTCGACCCATCCTGGCTGCTCGCCTACGGCACCGGCTTTCTGCTGATGGTTCCCTTGGCCGCCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGGGCCTTTGGGCCCCACCTGACTCTTTCTTCTCCGGTGGAGACAGAACAGGTGCGTCAGAAGCTTCTACAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTTAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAGgtaggagccgcccatcttctcctgtaccactctgctagagtatgagtgat Alignment from Exonerate_coding2genome AATTGGTCCTGGAGAAGTCC-CTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG gggtatggtttcgcacaaactcccctaactttatgcgttctcttttccagAATTGGTCCTGGAGAAGTCCCCTGCATCGCTCAGTTCTCAAACCACTTCGACCCATCCTGGCTGCTCGCCTACGGCACCGGCTTTCTGCTGATGGTTCCCTTGGCCGCCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGGGCCTTTGGGCCCCACCTGACTCTTTCTTCTCCGGTGGAGACAGAACAGGTGCGTCAGAAGCTTCTACAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTTAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAGgtaggagccgcccatcttctcctgtaccactctgctagagtatgagtgat Alignment from GeneWise AA GTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCCATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG GGgtatggtttcgcacaaactcccctaactttatgcgttctcttttccagaattggtcctggagaagTCCCCTGCATCGCTCAGTTCTCAAACCACTTCGACCCATCCTGGCTGCTCGCCTACGGCACCGGCTTTCTGCTGATGGTTCCCTTGGCCGCCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGGGCCTTTGGGCCCCACCTGACTCTTTCTTCTCCGGTGGAGACAGAACAGGTGCGTCAGAAGCTTCTACAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTTAAGTGGCTCCTGCAGGCCTGCAAGCTGCTGTACACAGCCCTGAAGAGCCAGGCAGgtaggagccgcccatcttctcctgtaccactctgctagagtatgagtgat #### Rin1_ID813_8 --> 2 - 1 Original Alignment gaGAGAATGCAGGTGCTGATGAGTTCCTG-CCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTC---ACTGGAGAGg gaccctagctcccagacctccagtaagatcaggtcatgtcctgtgttcaggaGAAAATGCAGGAGCTGATGAGTTCCTTCCCCCTGCTAAGCCTTGTTTTGGCACAGTGTGACCTGCCTGACCTCCTGTTGGAAGCTGAGTATATGTCAGAGCTTCTCGAACCAACCCTGCTCACTGCAGGTGAGggttagaatccctcattgcttctatagttggacctggtacttgtggataaa Alignment from CESAR gaGAGAATGCAGGTGCTGATGAGTTCCTGCCT-CTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGg gaccctagctcccagacctccagtaagatcaggtcatgtcctgtgttcaggaGAAAATGCAGGAGCTGATGAGTTCCTTCCCCCTGCTAAGCCTTGTTTTGGCACAGTGTGACCTGCCTGACCTCCTGTTGGAAGCTGAGTATATGTCAGAGCTTCTCGAACCAACCCTGCTCACTGCAGGTGAGggttagaatccctcattgcttctatagttggacctggtacttgtggataaa Alignment from Spaln_aa2Genome GAGAGAATGCAGGTGCTGATGAGTTCCTG-CCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGG gaccctagctcccagacctccagtaagatcaggtcatgtcctgtgttcagGAGAAAATGCAGGAGCTGATGAGTTCCTTcCCCCTGCTAAGCCTTGTTTTGGCACAGTGTGACCTGCCTGACCTCCTGTTGGAAGCTGAGTATATGTCAGAGCTTCTCGAACCAACCCTGCTCACTGCAGGTGAGGgttagaatccctcattgcttctatagttggacctggtacttgtggataaa Alignment from Spaln_nt2Genome GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTC-TGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACTGGAG gaccctagctcccagacctccagtaagatcaggtcatgtcctgtgttcagGAGAAAATGCAGGAGCTGATGAGTTCCTTCCCCCTGCTAAGCCTTGTTTTGGCACAGTGTGACCTGCCTGACCTCCTGTTGGAAGCTGAGTATATGTCAGAGCTTCTCGAACCAACCCTGCTCACTGCAGgtgagggttagaatccctcattgcttctatagttggacctggtacttgtggataaa Alignment from Pairagon GAGAGAATGCAGGTGCTGATGAGTTCC-TGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACTGGAG gaccctagctcccagacctccagtaagatcaggtcatgtcctgtgttcagGAGAAAATGCAGGAGCTGATGAGTTCCTTCCCCCTGCTAAGCCTTGTTTTGGCACAGTGTGACCTGCCTGACCTCCTGTTGGAAGCTGAGTATATGTCAGAGCTTCTCGAACCAACCCTGCTCACTGCAGgtgagggttagaatccctcattgcttctatagttggacctggtacttgtggataaa Alignment from Exonerate_protein2genome GAGAGAATGCAGGTGCTGATGAGTTCCTG-CCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGG gaccctagctcccagacctccagtaagatcaggtcatgtcctgtgttcagGAGAAAATGCAGGAGCTGATGAGTTCCTTCCCCCTGCTAAGCCTTGTTTTGGCACAGTGTGACCTGCCTGACCTCCTGTTGGAAGCTGAGTATATGTCAGAGCTTCTCGAACCAACCCTGCTCACTGCAGGTGAGGgttagaatccctcattgcttctatagttggacctggtacttgtggataaa Alignment from Exonerate_coding2genome GAGAGAATGCAGGTGCTGATGAGTTCCTG-CCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGG gaccctagctcccagacctccagtaagatcaggtcatgtcctgtgttcagGAGAAAATGCAGGAGCTGATGAGTTCCTTCCCCCTGCTAAGCCTTGTTTTGGCACAGTGTGACCTGCCTGACCTCCTGTTGGAAGCTGAGTATATGTCAGAGCTTCTCGAACCAACCCTGCTCACTGCAGGTGAGGgttagaatccctcattgcttctatagttggacctggtacttgtggataaa Alignment from GeneWise GAGAGAATGCAGGTGCTGATGAGTTC-CTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGG gaccctagctcccagacctccagtaagatcaggtcatgtcctgtgttcagGAGAAAATGCAGGAGCTGATGAGTTCCTTCCCCCTGCTAAGCCTTGTTTTGGCACAGTGTGACCTGCCTGACCTCCTGTTGGAAGCTGAGTATATGTCAGAGCTTCTCGAACCAACCCTGCTCACTGCAGGTGAGGgttagaatccctcattgcttctatagttggacctggtacttgtggataaa #### Rnaseh2c_ID1103_2 --> 2 - 0 Original Alignment ggCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAG-CCGCTGGAGCGGGACTTC tcttgggctttgtgggctgcagtggcactgatattgtttttcttttttagggTTACAGGCACCATTTCATGGTCGTGGGCTGTGGGGTGAGGAGGTAGCTGTGCCACCAGGGTTTGCAGGATTTGTGATGGTGACAGAG------------------------------------------------------------GACGATGCCCAAGAGCCCATTAGAGAGAGACTTCgtatgtatggagagatagtacagtttgggtgagggcattttgcatgaggg Alignment from CESAR ggCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAG-CCGCTGGAGCGGGACTTC tcttgggctttgtgggctgcagtggcactgatattgtttttcttttttagggTTACAGGCACCATTTCATGGTCGTGGGCTGTGGGGTGAGGAGGTAGCTGTGCCACCAGGGTTTGCAGGATTTGTGATGGTGACAGAG------------------------------------------------------------GACGATGCCCAAGAGCCCATTAGAGAGAGACTTCgtatgtatggagagatagtacagtttgggtgagggcattttgcatgaggg Alignment from Spaln_aa2Genome GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC tcttgggctttgtgggctgcagtggcactgatattgtttttcttttttagGGTTACAGGCACCATTTCATGGTCGTGGGCTGTGGGGTGAGGAGGTAGCTGTGCCACCAGGGTTTGCAGGATTTGTGATGGTGACAGAGGACGATGCCCAAGAGCCCATTAGAGAG------------------------------------------AGACTTCGTATGTATGGAGAGATAgtacagtttgggtgagggcattttgcatgaggg Alignment from Spaln_nt2Genome GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGG---AGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGA tcttgggctttgtgggctgcagtggcactgatattgtttttcttttttagGGTTACAGGCACCATTTCATGGTCGTGGGCTGTGGGGTGAGGAGGTAGCTGTGCCACCAGGGTTTGCAGGATTTGTGATGGTGACAGAGGACGATGCCCAAGAGCCCATTAGAGAGAGACT--TCGTATGTATGGAGAGATAGTACAGTTTGGGTGAGG-GCA--------TTTT Alignment from Pairagon GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAG-CCGCTGGAGCGGGACTTC tcttgggctttgtgggctgcagtggcactgatattgtttttcttttttagGGTTACAGGCACCATTTCATGGTCGTGGGCTGTGGGGTGAGGAGGTAGCTGTGCCACCAGGGTTTGCAGGATTTGTGATGGTGACAGA------------------------------------------------------------GGACGATGCCCAAGAGCCCATTAGAGAGAGACTTCgtatgtatggagagatagtacagtttgggtgagggcattttgcatgaggg Alignment from Exonerate_protein2genome GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAG tcttgggctttgtgggctgcagtggcactgatattgtttttcttttttagGGTTACAGGCACCATTTCATGGTCGTGGGCTGTGGGGTGAGGAGGTAGCTGTGCCACCAGGGTTTGCAGGATTTGTGATGGTGACAGAGGACGATGCCCAAgagcccattagagagagacttcgtatgtatggagagatagtacagtttgggtgagggcattttgcatgaggg Alignment from Exonerate_coding2genome GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAG tcttgggctttgtgggctgcagtggcactgatattgtttttcttttttagGGTTACAGGCACCATTTCATGGTCGTGGGCTGTGGGGTGAGGAGGTAGCTGTGCCACCAGGGTTTGCAGGATTTGTGATGGTGACAGAGGACGATGCCCAAgagcccattagagagagacttcgtatgtatggagagatagtacagtttgggtgagggcattttgcatgaggg Alignment from GeneWise GGCTACAGGCGTCGTTTCGCGGTCGCGGCCTGCGGGGCGAGGAGGTAGCTGTGCCGCCAGGGTTTGCGGGATTCGTGATGGTGACGGAGGAGAAGGGAGAGGGGTTGATAGGGAAACTGAACTTCTCCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTC tcttgggctttgtgggctgcagtggcactgatattgtttttcttttttagGGTTACAGGCACCATTTCATGGTCGTGGGCTGTGGGGTGAGGAGGTAGCTGTGCCACCAGGGTTTGCAGGATTTGTGATGGTGACAGAGGAC---------------------------------------GATGCCCAAGAGCCCATTAGAGAGAGACTTCGT---ATGTATGGAGAGATAgtacagtttgggtgagggcattttgcatga #### Rom1_ID2497_2 --> 1 - 0 Original Alignment cCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTC-CCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tcaatgcttttacactgcatctcatcatcttttgctctgctcgtccctagtCGGATCCCAAGCAATGTAGAAGGCTTATACCTGATTGATGGGGTCCCCCTTCTCCTGCTGTAATCCCCACTCACCT------TGCCTGCAAAGCCAACTCTCAGACCCCTATGCCCATCCACTTCTT---CCTCAGCAGCCCAACCTAAACCTCTGGGCCCAAGGATGCCACAAAGTGCTGTTGGAACACCTGCAGGGTTTATCCGGAACATTGGGGAGTATTCTGGTGATAACTTTATTGCTGCAGgtacggcattaaggtccctaactcccacattcagttttgtgaccttaaaa Alignment from CESAR cCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCC-TTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tcaatgcttttacactgcatctcatcatcttttgctctgctcgtccctagtCGGATCCCAAGCAATGTAGAAGGCTTATACCTGATTGATGGGGTCCCCCTTCTCCTGCTGTAATCCCCACTCA------CCTTGCCTGCAAAGCCAACTCTCAGACCCCTATGCCCATCCACTTCTT---CCTCAGCAGCCCAACCTAAACCTCTGGGCCCAAGGATGCCACAAAGTGCTGTTGGAACACCTGCAGGGTTTATCCGGAACATTGGGGAGTATTCTGGTGATAACTTTATTGCTGCAGgtacggcattaaggtccctaactcccacattcagttttgtgaccttaaaa Alignment from Spaln_aa2Genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTC-CCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tcaatgcttttacactgcatctcatcatcttttgctctgctcgtccctagTCGGATCCCAAGCAATGTAGAAGGCTTATACCTGATTGATGGGGTCcCCCTTCTCCTGCTGTAATCCCCACTCA------CCTTGCCTGCAAAGCCAACTCTCAGACCCCTATGCCCATCCACTTCTT---CCTCAGCAGCCCAACCTAAACCTCTGGGCCCAAGGATGCCACAAAGTGCTGTTGGAACACCTGCAGGGTTTATCCGGAACATTGGGGAGTATTCTGGTGATAACTTTATTGCTGCAGgtacggcattaaggtccctaactcccacattcagttttgtgaccttaaaa Alignment from Spaln_nt2Genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCC-CTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tcaatgcttttacactgcatctcatcatcttttgctctgctcgtccctagTCGGATCCCAAGCAATGTAGAAGGCTTATACCTGATTGATGGGGTCCCCCTTCTCCTGCTGTAATCCCCACTCA------CCTTGCCTGCAAAGCCAACTCTCAGACCCCTATGCCCATCCACTTCT---TCCTCAGCAGCCCAACCTAAACCTCTGGGCCCAAGGATGCCACAAAGTGCTGTTGGAACACCTGCAGGGTTTATCCGGAACATTGGGGAGTATTCTGGTGATAACTTTATTGCTGCAGgtacggcattaaggtccctaactcccacattcagttttgtgaccttaaaa Alignment from Pairagon CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTCCCC-TTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tcaatgcttttacactgcatctcatcatcttttgctctgctcgtccctagTCGGATCCCAAGCAATGTAGAAGGCTTATACCTGATTGATGGGGTCCCCCTTCTCCTGCTGTAATCCCCACTCA------CCTTGCCTGCAAAGCCAACTCTCAGACCCCTATGCCCATCCACTTCT---TCCTCAGCAGCCCAACCTAAACCTCTGGGCCCAAGGATGCCACAAAGTGCTGTTGGAACACCTGCAGGGTTTATCCGGAACATTGGGGAGTATTCTGGTGATAACTTTATTGCTGCAGgtacggcattaaggtccctaactcccacattcagttttgtgaccttaaaa Alignment from Exonerate_protein2genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTC-CCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tcaatgcttttacactgcatctcatcatcttttgctctgctcgtccctagTCGGATCCCAAGCAATGTAGAAGGCTTATACCTGATTGATGGGGTCCCCCTTCTCCTGCTGTAATCCCCACTCA------CCTTGCCTGCAAAGCCAACTCTCAGACCCCTATGCCCATCCACTTCTT---CCTCAGCAGCCCAACCTAAACCTCTGGGCCCAAGGATGCCACAAAGTGCTGTTGGAACACCTGCAGGGTTTATCCGGAACATTGGGGAGTATTCTGGTGATAACTTTATTGCTGCAGgtacggcattaaggtccctaactcccacattcagttttgtgaccttaaaa Alignment from Exonerate_coding2genome CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGCGTC-CCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tcaatgcttttacactgcatctcatcatcttttgctctgctcgtccctagTCGGATCCCAAGCAATGTAGAAGGCTTATACCTGATTGATGGGGTCCCCCTTCTCCTGCTGTAATCCCCACTCA------CCTTGCCTGCAAAGCCAACTCTCAGACCCCTATGCCCATCCACTTCTT---CCTCAGCAGCCCAACCTAAACCTCTGGGCCCAAGGATGCCACAAAGTGCTGTTGGAACACCTGCAGGGTTTATCCGGAACATTGGGGAGTATTCTGGTGATAACTTTATTGCTGCAGgtacggcattaaggtccctaactcccacattcagttttgtgaccttaaaa Alignment from GeneWise CCGGATCCAGAGCAATGTGGAAGGCTTATATCTGATTGATGGC-GTCCCCTTCTCCTGTTGTAATCCCCACTCACCCCGGCCTTGCCTGCAAAGCCAACTCTCGGACCCCTATGCCCATCCACTCTTCGATCCTCGGCAGCCCAACCTAAACCTCTGGGCCCAAGGGTGCCATGAAGTGCTGCTGGAACACCTGCAGGGTTTATCAGGCACACTGGGAAGTATTCTGGCTGTCACCTTATTGCTGCAG tcaatgcttttacactgcatctcatcatcttttgctctgctcgtccctagTCGGATCCCAAGCAATGTAGAAGGCTTATACCTGATTGATGGGGTCCCCCTTCTCCTGCTGTAATCCCCACTCACCT------TGCCTGCAAAGCCAACTCTCAGACCCCTATGCCCATCCACTTCTT---CCTCAGCAGCCCAACCTAAACCTCTGGGCCCAAGGATGCCACAAAGTGCTGTTGGAACACCTGCAGGGTTTATCCGGAACATTGGGGAGTATTCTGGTGATAACTTTATTGCTGCAGgtacggcattaaggtccctaactcccacattcagttttgtgaccttaaaa #### Rps6kb2_ID373_9 --> 1 - 0 Original Alignment gGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATG-CTCACTGGATCG gagtaccacaaagggcctacacttatattcctgaattcatcttcttctaggGTGCCAGAGATTCTATTGCGCACAGGTCATAATCGGGCAGTGGACTGGTGGAGCCTTGGGGCCCTAATGTATGACATGCCTCACTGAATCAgtaatttcacttcactggtggtgttaaggagataatgtagggagctcttt Alignment from CESAR gGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATG-CTCACTGGATCG gagtaccacaaagggcctacacttatattcctgaattcatcttcttctaggGTGCCAGAGATTCTATTGCGCACAGGTCATAATCGGGCAGTGGACTGGTGGAGCCTTGGGGCCCTAATGTATGACATGCCTCACTGAATCAgtaatttcacttcactggtggtgttaaggagataatgtagggagctcttt Alignment from Spaln_aa2Genome GGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATG-CTCACTGGATCG gagtaccacaaagggcctacacttatattcctgaattcatcttcttctagGGTGCCAGAGATTCTATTGCGCACAGGTCATAATCGGGCAGTGGACTGGTGGAGCCTTGGGGCCCTAATGTATGACATGcCTCACTGAATCAgtaatttcacttcactggtggtgttaaggagataatgtagggagctcttt Alignment from Spaln_nt2Genome GGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATGC-TCACTGGATCG gagtaccacaaagggcctacacttatattcctgaattcatcttcttctagGGTGCCAGAGATTCTATTGCGCACAGGTCATAATCGGGCAGTGGACTGGTGGAGCCTTGGGGCCCTAATGTATGACATGCCTCACTGAATCAgtaatttcacttcactggtggtgttaaggagataatgtagggagctcttt Alignment from Pairagon GGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATG-CTCACTGGATCG gagtaccacaaagggcctacacttatattcctgaattcatcttcttctagGGTGCCAGAGATTCTATTGCGCACAGGTCATAATCGGGCAGTGGACTGGTGGAGCCTTGGGGCCCTAATGTATGACATGCCTCACTGAATCAgtaatttcacttcactggtggtgttaaggagataatgtagggagctcttt Alignment from Exonerate_protein2genome GGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATG-CTCACTGGATCG gagtaccacaaagggcctacacttatattcctgaattcatcttcttctagGGTGCCAGAGATTCTATTGCGCACAGGTCATAATCGGGCAGTGGACTGGTGGAGCCTTGGGGCCCTAATGTATGACATGCCTCACTGAATCAgtaatttcacttcactggtggtgttaaggagataatgtagggagctcttt Alignment from Exonerate_coding2genome GGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATG-CTCACTGGATCG gagtaccacaaagggcctacacttatattcctgaattcatcttcttctagGGTGCCAGAGATTCTATTGCGCACAGGTCATAATCGGGCAGTGGACTGGTGGAGCCTTGGGGCCCTAATGTATGACATGCCTCACTGAATCAgtaatttcacttcactggtggtgttaaggagataatgtagggagctcttt Alignment from GeneWise GGCCCCAGAGATTCTAGTGCGCACTGGTCACAACCGGGCAGTGGACTGGTGGAGCCTGGGAGCCCTGATGTACGACATG-CTCACTGGATCG gagtaccacaaagggcctacacttatattcctgaattcatcttcttctagGGTGCCAGAGATTCTATTGCGCACAGGTCATAATCGGGCAGTGGACTGGTGGAGCCTTGGGGCCCTAATGTATGACATGCCTCACTGAATCAgtaatttcacttcactggtggtgttaaggagataatgtagggagctcttt #### Rps6kb2_ID374_8 --> 2 - 2 Original Alignment gcCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACT-CACACCTTCTGTGGCACCATTGAGTACat cctggtcacatgatttaaggacttcttgcagcttatctgtttctttttaggcCACATCAAACTGACATACTTAGGACTTTGCAAGGAGTCTATTCATGAGGGTGCTATCACCCCATACTTTCTGTGGCACCATTGAGTACatgtttgtttggaaggagtaccacaaagggcctacacttatatcagctgccc Alignment from CESAR gcCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACT-CACACCTTCTGTGGCACCATTGAGTACat cctggtcacatgatttaaggacttcttgcagcttatctgtttctttttaggcCACATCAAACTGACATACTTAGGACTTTGCAAGGAGTCTATTCATGAGGGTGCTATCACCCCATACTTTCTGTGGCACCATTGAGTACatgtttgtttggaaggagtaccacaaagggcctacacttatattcctgaatt Alignment from Spaln_aa2Genome GCCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACT-CACACCTTCTGTGGCACCATTGAGTACAT cctggtcacatgatttaaggacttcttgcagcttatctgtttctttttagGCCACATCAAACTGACATACTTAGGACTTTGCAAGGAGTCTATTCATGAGGGTGCTATCACCcCATACTTTCTGTGGCACCATTGAGTACATgtttgtttggaaggagtaccacaaagggcctacacttatatcagctgccc Alignment from Spaln_nt2Genome GCCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTC-ACACCTTCTGTGGCACCATTGAGTACAT cctggtcacatgatttaaggacttcttgcagcttatctgtttctttttagGCCACATCAAACTGACATACTTAGGACTTTGCAAGGAGTCTATTCATGAGGGTGCTATCACCCCATACTTTCTGTGGCACCATTGAGTACATgtttgtttggaaggagtaccacaaagggcctacacttatatcagctgccc Alignment from Pairagon GCCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCA-CTCACACCTTCTGTGGCACCATTGAGTACAT cctggtcacatgatttaaggacttcttgcagcttatctgtttctttttagGCCACATCAAACTGACATACTTAGGACTTTGCAAGGAGTCTATTCATGAGGGTGCTATCACCCCATACTTTCTGTGGCACCATTGAGTACATgtttgtttggaaggagtaccacaaagggcctacacttatatcagctgccc Alignment from Exonerate_protein2genome GCCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACT-CACACCTTCTGTGGCACCATTGAGTACAT cctggtcacatgatttaaggacttcttgcagcttatctgtttctttttagGCCACATCAAACTGACATACTTAGGACTTTGCAAGGAGTCTATTCATGAGGGTGCTATCACCCCATACTTTCTGTGGCACCATTGAGTACATgtttgtttggaaggagtaccacaaagggcctacacttatatcagctgccc Alignment from Exonerate_coding2genome GCCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACT-CACACCTTCTGTGGCACCATTGAGTACAT cctggtcacatgatttaaggacttcttgcagcttatctgtttctttttagGCCACATCAAACTGACATACTTAGGACTTTGCAAGGAGTCTATTCATGAGGGTGCTATCACCCCATACTTTCTGTGGCACCATTGAGTACATgtttgtttggaaggagtaccacaaagggcctacacttatatcagctgccc Alignment from GeneWise GCCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATC-ACTCACACCTTCTGTGGCACCATTGAGTACATG------------------------------------------------- cctggtcacatgatttaaggacttcttgcagcttatctgtttctttttagGCCACATCAAACTGACATACTTAGGACTTTGCAAGGAGTCTATTCATGAGGGTGCTATCACCCCATACTTTCTGTGGCACCATTGAGTACATGTTTGTTTGGAAGGAGTACCACAAAGGGCCTACACTTATATCAGCTGCCC #### Rps6kb2_ID380_2 --> 0 - 2 Original Alignment GACGTGTGTCCC-CTTGGCGAATTAAGGGCTGCTGGCCTGga gagcctatgttaggaggatgtatacttcactgtaatggcatatcccttagGATGTGTGTCCCCCTTGGCAAATTAAGGGCTGCTGGCCTGgagtgggtgggggtctagcttagaggctaggggtctaaagaaggctttggag Alignment from CESAR GACGTGTGT-CCCCTTGGCGAATTAAGGGCTGCTGGCCTGga gagcctatgttaggaggatgtatacttcactgtaatggcatatcccttagGATGTGTGTCCCCCTTGGCAAATTAAGGGCTGCTGGCCTGgagtgggtgggggtctagcttagaggctaggggtctaaagaaggctttggag Alignment from Spaln_aa2Genome GACGTGTGT-CCCCTTGGCGAATTAAGGGCTGCTGGCCTGGA gagcctatgttaggaggatgtatacttcactgtaatggcatatcccttagGATGTGTGTcCCCCTTGGCAAATTAAGGGCTGCTGGCCTGGAgtgggtgggggtctagcttagaggctaggggtctaaagaaggctttggag Alignment from Spaln_nt2Genome GACGTGTGTCCCC-TTGGCGAATTAAGGGCTGCTGGCCTGGA gagcctatgttaggaggatgtatacttcactgtaatggcatatcccttagGATGTGTGTCCCCCTTGGCAAATTAAGGGCTGCTGGCCTGGAgtgggtgggggtctagcttagaggctaggggtctaaagaaggctttggag Alignment from Pairagon GACGTGTGT-CCCCTTGGCGAATTAAGGGCTGCTGGCCTGGA gagcctatgttaggaggatgtatacttcactgtaatggcatatcccttagGATGTGTGTCCCCCTTGGCAAATTAAGGGCTGCTGGCCTGGAgtgggtgggggtctagcttagaggctaggggtctaaagaaggctttggag Alignment from Exonerate_protein2genome GACGTGTGT-CCCCTTGGCGAATTAAGGGCTGCTGGCCTGGA gagcctatgttaggaggatgtatacttcactgtaatggcatatcccttagGATGTGTGTCCCCCTTGGCAAATTAAGGGCTGCTGGCCTGGAgtgggtgggggtctagcttagaggctaggggtctaaagaaggctttggag Alignment from Exonerate_coding2genome GACGTGTGT-CCCCTTGGCGAATTAAGGGCTGCTGGCCTGGA gagcctatgttaggaggatgtatacttcactgtaatggcatatcccttagGATGTGTGTCCCCCTTGGCAAATTAAGGGCTGCTGGCCTGGAgtgggtgggggtctagcttagaggctaggggtctaaagaaggctttggag Alignment from GeneWise gagcctatgttaggaggatgtatacttcactgtaatggcatatcccttaggatgtgtgtcccccttggcaaattaagggctgctggcctggagtgggtgggggtctagcttagaggctaggggtctaaagaaggctttggag #### Rrp12_ID8296_27 --> 1 - 2 Original Alignment aTTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAACATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAG-GAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACag gatgaggggttcttggtaacgtcaagactataccttttccatctccacaggTTTGAGTTGGTGAAGGGCTTGTTACCTGCAGAGTACCACAAAGTACTGATTAACATAAGGAAAGCAGAGACCCGAGCAAAGAAATATCGGGCCTTGAGTCAGGCTGCTGTAGAGCGAGGAGGAAGTTGAAGAAGAGGAAGAGGAGCCTGTTCAGAGCAAAGGTGACaggtgagtcatgactcttctcagcaatgagttagctggggttagatagcctt Alignment from CESAR aTTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAACATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAG-GAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACag gatgaggggttcttggtaacgtcaagactataccttttccatctccacaggTTTGAGTTGGTGAAGGGCTTGTTACCTGCAGAGTACCACAAAGTACTGATTAACATAAGGAAAGCAGAGACCCGAGCAAAGAAATATCGGGCCTTGAGTCAGGCTGCTGTAGAGCGAGGAGGAAGTTGAAGAAGAGGAAGAGGAGCCTGTTCAGAGCAAAGGTGACaggtgagtcatgactcttctcagcaatgagttagctggggttagatagcctt Alignment from Spaln_aa2Genome ATTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAACATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAG-GAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAG gatgaggggttcttggtaacgtcaagactataccttttccatctccacagGTTTGAGTTGGTGAAGGGCTTGTTACCTGCAGAGTACCACAAAGTACTGATTAACATAAGGAAAGCAGAGACCCGAGCAAAGAAATATCGGGCCTTGAGTCAGGCTGCTGTAGAGcGAGGAGGAAGTTGAAGAAGAGGAAGAGGAGCCTGTTCAGAGCAAAGGTGACAGgtgagtcatgactcttctcagcaatgagttagctggggttagatagcctt Alignment from Spaln_nt2Genome ATTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAACATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAG-GAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAG gatgaggggttcttggtaacgtcaagactataccttttccatctccacagGTTTGAGTTGGTGAAGGGCTTGTTACCTGCAGAGTACCACAAAGTACTGATTAACATAAGGAAAGCAGAGACCCGAGCAAAGAAATATCGGGCCTTGAGTCAGGCTGCTGTAGAGCGAGGAGGAAGTTGAAGAAGAGGAAGAGGAGCCTGTTCAGAGCAAAGGTGACAGgtgagtcatgactcttctcagcaatgagttagctggggttagatagcctt Alignment from Pairagon ATTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAACATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAG-GAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAG gatgaggggttcttggtaacgtcaagactataccttttccatctccacagGTTTGAGTTGGTGAAGGGCTTGTTACCTGCAGAGTACCACAAAGTACTGATTAACATAAGGAAAGCAGAGACCCGAGCAAAGAAATATCGGGCCTTGAGTCAGGCTGCTGTAGAGCGAGGAGGAAGTTGAAGAAGAGGAAGAGGAGCCTGTTCAGAGCAAAGGTGACAGgtgagtcatgactcttctcagcaatgagttagctggggttagatagcctt Alignment from Exonerate_protein2genome ATTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAACATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAG-GAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAG gatgaggggttcttggtaacgtcaagactataccttttccatctccacagGTTTGAGTTGGTGAAGGGCTTGTTACCTGCAGAGTACCACAAAGTACTGATTAACATAAGGAAAGCAGAGACCCGAGCAAAGAAATATCGGGCCTTGAGTCAGGCTGCTGTAGAGCGAGGAGGAAGTTGAAGAAGAGGAAGAGGAGCCTGTTCAGAGCAAAGGTGACAGgtgagtcatgactcttctcagcaatgagttagctggggttagatagcctt Alignment from Exonerate_coding2genome ATTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAACATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAG-GAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAG gatgaggggttcttggtaacgtcaagactataccttttccatctccacagGTTTGAGTTGGTGAAGGGCTTGTTACCTGCAGAGTACCACAAAGTACTGATTAACATAAGGAAAGCAGAGACCCGAGCAAAGAAATATCGGGCCTTGAGTCAGGCTGCTGTAGAGCGAGGAGGAAGTTGAAGAAGAGGAAGAGGAGCCTGTTCAGAGCAAAGGTGACAGgtgagtcatgactcttctcagcaatgagttagctggggttagatagcctt Alignment from GeneWise ATTCGAGTTGGTGAAGGGTCTGCTACCCGCAGAATACCACAAAGTCCTGATAAACATCAGGAAAGCTGAGACCCGAGCCAAGAAGCATCGTGCCCTGAGCCAGGCTGCTGTAGAG-GAGGAGGAAGAGGAGGAAGAGGAAGAGGAGCCTGTCCAGAGCAAAGGTGACAG gatgaggggttcttggtaacgtcaagactataccttttccatctccacagGTTTGAGTTGGTGAAGGGCTTGTTACCTGCAGAGTACCACAAAGTACTGATTAACATAAGGAAAGCAGAGACCCGAGCAAAGAAATATCGGGCCTTGAGTCAGGCTGCTGTAGAGCGAGGAGGAAGTTGAAGAAGAGGAAGAGGAGCCTGTTCAGAGCAAAGGTGACAGgtgagtcatgactcttctcagcaatgagttagctggggttagatagcctt #### Rrp12_ID8301_22 --> 0 - 0 Original Alignment CCCCGTTTGAAGTGCCTCATACAT-ATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagggcaaactggcaggggggaaccaatatgcattttatttagCCCCGTTTAAAATGCCTCATACATCATTGTGAAGACACTATTGGCTGAGCATGAAGAGTTCATAGCTGCTCTGATCCCTGAGgtaagtcggtgtggaaggctctggaatcccaagccacacctgaggaggga Alignment from CESAR CCCCGTTTGAAGTGCCTCATACAT-ATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagggcaaactggcaggggggaaccaatatgcattttatttagCCCCGTTTAAAATGCCTCATACATCATTGTGAAGACACTATTGGCTGAGCATGAAGAGTTCATAGCTGCTCTGATCCCTGAGgtaagtcggtgtggaaggctctggaatcccaagccacacctgaggaggga Alignment from Spaln_aa2Genome CCCCGTTTGAAGTGCCTCATACAT-ATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagggcaaactggcaggggggaaccaatatgcattttatttagCCCCGTTTAAAATGCCTCATACATcATTGTGAAGACACTATTGGCTGAGCATGAAGAGTTCATAGCTGCTCTGATCCCTGAGgtaagtcggtgtggaaggctctggaatcccaagccacacctgaggaggga Alignment from Spaln_nt2Genome CCCCGTTTGAAGTGCCTCATACAT-ATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagggcaaactggcaggggggaaccaatatgcattttatttagCCCCGTTTAAAATGCCTCATACATCATTGTGAAGACACTATTGGCTGAGCATGAAGAGTTCATAGCTGCTCTGATCCCTGAGgtaagtcggtgtggaaggctctggaatcccaagccacacctgaggaggga Alignment from Pairagon CCCCGTTTGAAGTGCCTCATACAT-ATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagggcaaactggcaggggggaaccaatatgcattttatttagCCCCGTTTAAAATGCCTCATACATCATTGTGAAGACACTATTGGCTGAGCATGAAGAGTTCATAGCTGCTCTGATCCCTGAGgtaagtcggtgtggaaggctctggaatcccaagccacacctgaggaggga Alignment from Exonerate_protein2genome CCCCGTTTGAAGTGCCTCATACAT-ATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagggcaaactggcaggggggaaccaatatgcattttatttagCCCCGTTTAAAATGCCTCATACATCATTGTGAAGACACTATTGGCTGAGCATGAAGAGTTCATAGCTGCTCTGATCCCTGAGgtaagtcggtgtggaaggctctggaatcccaagccacacctgaggaggga Alignment from Exonerate_coding2genome CCCCGTTTGAAGTGCCTCATACAT-ATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagggcaaactggcaggggggaaccaatatgcattttatttagCCCCGTTTAAAATGCCTCATACATCATTGTGAAGACACTATTGGCTGAGCATGAAGAGTTCATAGCTGCTCTGATCCCTGAGgtaagtcggtgtggaaggctctggaatcccaagccacacctgaggaggga Alignment from GeneWise CCCCGTTTGAAGTGCCTCATACAT-ATTGTGAAGACGCTGTCGGCTGAGCATGAGGAGTTCATAGCTGCCCTCATCCCAGAG gaatggttagggcaaactggcaggggggaaccaatatgcattttatttagCCCCGTTTAAAATGCCTCATACATCATTGTGAAGACACTATTGGCTGAGCATGAAGAGTTCATAGCTGCTCTGATCCCTGAGgtaagtcggtgtggaaggctctggaatcccaagccacacctgaggaggga #### Rrp12_ID8302_21 --> 0 - 0 Original Alignment AGCAAGGTCCACGGTGTACAGAAGAAGGCCTAC-CGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAGACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG attcttacttggccctgttcttacctggtctacctgcacctcccacacagAGTAAAGTCCATGGAATACAGAAAAAGGCTTACCCGTGTCCTGGAAGAAGTGTGTGACAGTTCTCAGGGCCCAGCAGCTCACTTTGTGCAAAGCCATCGGGATGATCTGAAAAAGACTCTCCTGGACTCACTTCGGACCACATCCTCACCCGCTAAAAGGgtaatagctctgggttgacttaccacaggcaagtgagggcatgtgcaagc Alignment from CESAR AGCAAGGTCCACGGTGTACAGAAGAAGGCCTAC-CGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAGACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG attcttacttggccctgttcttacctggtctacctgcacctcccacacagAGTAAAGTCCATGGAATACAGAAAAAGGCTTACCCGTGTCCTGGAAGAAGTGTGTGACAGTTCTCAGGGCCCAGCAGCTCACTTTGTGCAAAGCCATCGGGATGATCTGAAAAAGACTCTCCTGGACTCACTTCGGACCACATCCTCACCCGCTAAAAGGgtaatagctctgggttgacttaccacaggcaagtgagggcatgtgcaagc Alignment from Spaln_aa2Genome AGCAAGGTCCACGGTGTACAGAAGAAGGCCTAC-CGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAGACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG attcttacttggccctgttcttacctggtctacctgcacctcccacacagAGTAAAGTCCATGGAATACAGAAAAAGGCTTACcCGTGTCCTGGAAGAAGTGTGTGACAGTTCTCAGGGCCCAGCAGCTCACTTTGTGCAAAGCCATCGGGATGATCTGAAAAAGACTCTCCTGGACTCACTTCGGACCACATCCTCACCCGCTAAAAGGgtaatagctctgggttgacttaccacaggcaagtgagggcatgtgcaagc Alignment from Spaln_nt2Genome AGCAAGGTCCACGGTGTACAGAAGAAGGCCTACC-GCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAGACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG attcttacttggccctgttcttacctggtctacctgcacctcccacacagAGTAAAGTCCATGGAATACAGAAAAAGGCTTACCCGTGTCCTGGAAGAAGTGTGTGACAGTTCTCAGGGCCCAGCAGCTCACTTTGTGCAAAGCCATCGGGATGATCTGAAAAAGACTCTCCTGGACTCACTTCGGACCACATCCTCACCCGCTAAAAGGgtaatagctctgggttgacttaccacaggcaagtgagggcatgtgcaagc Alignment from Pairagon AGCAAGGTCCACGGTGTACAGAAGAAGGCCTA-CCGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAGACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG attcttacttggccctgttcttacctggtctacctgcacctcccacacagAGTAAAGTCCATGGAATACAGAAAAAGGCTTACCCGTGTCCTGGAAGAAGTGTGTGACAGTTCTCAGGGCCCAGCAGCTCACTTTGTGCAAAGCCATCGGGATGATCTGAAAAAGACTCTCCTGGACTCACTTCGGACCACATCCTCACCCGCTAAAAGGgtaatagctctgggttgacttaccacaggcaagtgagggcatgtgcaagc Alignment from Exonerate_protein2genome AGCAAGGTCCACGGTGTACAGAAGAAGGCCTAC-CGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAGACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG attcttacttggccctgttcttacctggtctacctgcacctcccacacagAGTAAAGTCCATGGAATACAGAAAAAGGCTTACCCGTGTCCTGGAAGAAGTGTGTGACAGTTCTCAGGGCCCAGCAGCTCACTTTGTGCAAAGCCATCGGGATGATCTGAAAAAGACTCTCCTGGACTCACTTCGGACCACATCCTCACCCGCTAAAAGGgtaatagctctgggttgacttaccacaggcaagtgagggcatgtgcaagc Alignment from Exonerate_coding2genome AGCAAGGTCCACGGTGTACAGAAGAAGGCCTAC-CGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAGACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG attcttacttggccctgttcttacctggtctacctgcacctcccacacagAGTAAAGTCCATGGAATACAGAAAAAGGCTTACCCGTGTCCTGGAAGAAGTGTGTGACAGTTCTCAGGGCCCAGCAGCTCACTTTGTGCAAAGCCATCGGGATGATCTGAAAAAGACTCTCCTGGACTCACTTCGGACCACATCCTCACCCGCTAAAAGGgtaatagctctgggttgacttaccacaggcaagtgagggcatgtgcaagc Alignment from GeneWise AGCAAGGTCCACGGTGTACAGAAGAAGGCCTAC-CGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAGACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG attcttacttggccctgttcttacctggtctacctgcacctcccacacagAGTAAAGTCCATGGAATACAGAAAAAGGCTTACCCGTGTCCTGGAAGAAGTGTGTGACAGTTCTCAGGGCCCAGCAGCTCACTTTGTGCAAAGCCATCGGGATGATCTGAAAAAGACTCTCCTGGACTCACTTCGGACCACATCCTCACCCGCTAAAAGGgtaatagctctgggttgacttaccacaggcaagtgagggcatgtgcaagc #### Sart1_ID956_19 --> 0 - 2 Original Alignment CTCCTGAAGAAAATGAGCTCCAGT-GACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATgc gtaatatgttaggcctggtatcactgattgctctttgatctcattcatagCTCCGTAAGAAAATGAGCTCTAGTCGATACACCCCTGGGCACTGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAAAAGACACCTCATATTGTACTCAGTGGCAGTGGTAAGAGTATGAATgcgtaagtgtgggtaggagttggcagggtggatggtaagctgaataattagt Alignment from CESAR CTCCTGAAGAAAATGAGCTCCAGT-GACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATgc gtaatatgttaggcctggtatcactgattgctctttgatctcattcatagCTCCGTAAGAAAATGAGCTCTAGTCGATACACCCCTGGGCACTGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAAAAGACACCTCATATTGTACTCAGTGGCAGTGGTAAGAGTATGAATgcgtaagtgtgggtaggagttggcagggtggatggtaagctgaataattagt Alignment from Spaln_aa2Genome CTCCTGAAGAAAATGAGCTCCAGT-GACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC gtaatatgttaggcctggtatcactgattgctctttgatctcattcatagCTCCGTAAGAAAATGAGCTCTAGTcGATACACCCCTGGGCACTGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAAAAGACACCTCATATTGTACTCAGTGGCAGTGGTAAGAGTATGAATGCgtaagtgtgggtaggagttggcagggtggatggtaagctgaataattagt Alignment from Spaln_nt2Genome CTCCTGAAGAAAATGAGCTCCAGT-GACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC gtaatatgttaggcctggtatcactgattgctctttgatctcattcatagCTCCGTAAGAAAATGAGCTCTAGTCGATACACCCCTGGGCACTGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAAAAGACACCTCATATTGTACTCAGTGGCAGTGGTAAGAGTATGAATGCgtaagtgtgggtaggagttggcagggtggatggtaagctgaataattagt Alignment from Pairagon CTCCTGAAGAAAATGAGCTCCAGT-GACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC gtaatatgttaggcctggtatcactgattgctctttgatctcattcatagCTCCGTAAGAAAATGAGCTCTAGTCGATACACCCCTGGGCACTGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAAAAGACACCTCATATTGTACTCAGTGGCAGTGGTAAGAGTATGAATGCgtaagtgtgggtaggagttggcagggtggatggtaagctgaataattagt Alignment from Exonerate_protein2genome CTCCTGAAGAAAATGAGCTCCAGT-GACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCG gtaatatgttaggcctggtatcactgattgctctttgatctcattcatagCTCCGTAAGAAAATGAGCTCTAGTCGATACACCCCTGGGCACTGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAAAAGACACCTCATATTGTACTCAGTGGCAGTGGTAAGAGTATGAATGCGtaagtgtgggtaggagttggcagggtggatggtaagctgaataattagt Alignment from Exonerate_coding2genome CTCCTGAAGAAAATGAGCTCCAGT-GACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCG gtaatatgttaggcctggtatcactgattgctctttgatctcattcatagCTCCGTAAGAAAATGAGCTCTAGTCGATACACCCCTGGGCACTGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAAAAGACACCTCATATTGTACTCAGTGGCAGTGGTAAGAGTATGAATGCGtaagtgtgggtaggagttggcagggtggatggtaagctgaataattagt Alignment from GeneWise CTCCTGAAGAAAATGAGCTCC-AGTGACACGCCCCTGGGCACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCG gtaatatgttaggcctggtatcactgattgctctttgatctcattcatagCTCCGTAAGAAAATGAGCTCTAGTCGATACACCCCTGGGCACTGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAAAAGACACCTCATATTGTACTCAGTGGCAGTGGTAAGAGTATGAATGCGtaagtgtgggtaggagttggcagggtggatggtaagctgaataattagt #### Sart1_ID957_18 --> 0 - 0 Original Alignment GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAG-GGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG tgaggcctggattacagccttgcacccagttgctgcacatcttttcttagGCATTCCGGCAACTGTCCCACCGCTTCCATGGAAAGCGGCTCAGGCAAGATGAAGACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtataacttggaagcaaggtggccactctccattcctatgaaatgtaata Alignment from CESAR GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAG-GGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG tgaggcctggattacagccttgcacccagttgctgcacatcttttcttagGCATTCCGGCAACTGTCCCACCGCTTCCATGGAAAGCGGCTCAGGCAAGATGAAGACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtataacttggaagcaaggtggccactctccattcctatgaaatgtaata Alignment from Spaln_aa2Genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAG-GGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG tgaggcctggattacagccttgcacccagttgctgcacatcttttcttagGCATTCCGGCAACTGTCCCACCGCTTCCATGGAAAGcGGCTCAGGCAAGATGAAGACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtataacttggaagcaaggtggccactctccattcctatgaaatgtaata Alignment from Spaln_nt2Genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAG-GGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG tgaggcctggattacagccttgcacccagttgctgcacatcttttcttagGCATTCCGGCAACTGTCCCACCGCTTCCATGGAAAGCGGCTCAGGCAAGATGAAGACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtataacttggaagcaaggtggccactctccattcctatgaaatgtaata Alignment from Pairagon GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAG-GGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGC--------------------------------------------------- tgaggcctggattacagccttgcacccagttgctgcacatcttttcttagGCATTCCGGCAACTGTCCCACCGCTTCCATGGAAAGCGGCTCAGGCAAGATGAAGACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAGTATAACTTGGAAGCAAGGTGGCCACTCTCCATTCCTATGAAATGTAATA Alignment from Exonerate_protein2genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAG-GGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG tgaggcctggattacagccttgcacccagttgctgcacatcttttcttagGCATTCCGGCAACTGTCCCACCGCTTCCATGGAAAGCGGCTCAGGCAAGATGAAGACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtataacttggaagcaaggtggccactctccattcctatgaaatgtaata Alignment from Exonerate_coding2genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAG-GGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG tgaggcctggattacagccttgcacccagttgctgcacatcttttcttagGCATTCCGGCAACTGTCCCACCGCTTCCATGGAAAGCGGCTCAGGCAAGATGAAGACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtataacttggaagcaaggtggccactctccattcctatgaaatgtaata Alignment from GeneWise GCATTCCGGCAGCTGTCCCACCGCTTCCACGGA-AAGGGCTCAGGCAAGATGAAGACTGAGCGGCGGATGAAGAAGCTGGATGAGGAGGCG tgaggcctggattacagccttgcacccagttgctgcacatcttttcttagGCATTCCGGCAACTGTCCCACCGCTTCCATGGAAAGCGGCTCAGGCAAGATGAAGACTGAGCGGTGGATGAAGAAGCTGGATGAGGAGGCAgtataacttggaagcaaggtggccactctccattcctatgaaatgtaata #### Sart1_ID958_17 --> 1 - 0 Original Alignment gGCCATTGATGACAAGTACAGCCGACGGGAGGAGTAC-AGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gaagttctcagaggacctgatgaagctggcctgttcccctttcgccccaggGCCATTGATGACAAGTACAGCCGACAGGAGGAGTATCAGGGGCTTCACCCAGGACTTTAAGGAGAAAGATGGCTATAAGCCTGATGTTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCTGACTCCCAAAAAGgtaagaagaacctgtggaaatggtcagcccactggtgacagtgtatatga Alignment from CESAR gGCCATTGATGACAAGTACAGCCGACGGGAGGAGTAC-AGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gaagttctcagaggacctgatgaagctggcctgttcccctttcgccccaggGCCATTGATGACAAGTACAGCCGACAGGAGGAGTATCAGGGGCTTCACCCAGGACTTTAAGGAGAAAGATGGCTATAAGCCTGATGTTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCTGACTCCCAAAAAGgtaagaagaacctgtggaaatggtcagcccactggtgacagtgtatatga Alignment from Spaln_aa2Genome GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTAC-AGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gaagttctcagaggacctgatgaagctggcctgttcccctttcgccccagGGCCATTGATGACAAGTACAGCCGACAGGAGGAGTATcAGGGGCTTCACCCAGGACTTTAAGGAGAAAGATGGCTATAAGCCTGATGTTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCTGACTCCCAAAAAGgtaagaagaacctgtggaaatggtcagcccactggtgacagtgtatatga Alignment from Spaln_nt2Genome GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTA-CAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gaagttctcagaggacctgatgaagctggcctgttcccctttcgccccagGGCCATTGATGACAAGTACAGCCGACAGGAGGAGTATCAGGGGCTTCACCCAGGACTTTAAGGAGAAAGATGGCTATAAGCCTGATGTTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCTGACTCCCAAAAAGgtaagaagaacctgtggaaatggtcagcccactggtgacagtgtatatga Alignment from Pairagon GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTA-CAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gaagttctcagaggacctgatgaagctggcctgttcccctttcgccccagGGCCATTGATGACAAGTACAGCCGACAGGAGGAGTATCAGGGGCTTCACCCAGGACTTTAAGGAGAAAGATGGCTATAAGCCTGATGTTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCTGACTCCCAAAAAGgtaagaagaacctgtggaaatggtcagcccactggtgacagtgtatatga Alignment from Exonerate_protein2genome GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTAC-AGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gaagttctcagaggacctgatgaagctggcctgttcccctttcgccccagGGCCATTGATGACAAGTACAGCCGACAGGAGGAGTATCAGGGGCTTCACCCAGGACTTTAAGGAGAAAGATGGCTATAAGCCTGATGTTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCTGACTCCCAAAAAGgtaagaagaacctgtggaaatggtcagcccactggtgacagtgtatatga Alignment from Exonerate_coding2genome GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTAC-AGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gaagttctcagaggacctgatgaagctggcctgttcccctttcgccccagGGCCATTGATGACAAGTACAGCCGACAGGAGGAGTATCAGGGGCTTCACCCAGGACTTTAAGGAGAAAGATGGCTATAAGCCTGATGTTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCTGACTCCCAAAAAGgtaagaagaacctgtggaaatggtcagcccactggtgacagtgtatatga Alignment from GeneWise GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTAC-AGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAGACGGGCAGGAAACTGACTCCCAAGGAG gaagttctcagaggacctgatgaagctggcctgttcccctttcgccccagGGCCATTGATGACAAGTACAGCCGACAGGAGGAGTATCAGGGGCTTCACCCAGGACTTTAAGGAGAAAGATGGCTATAAGCCTGATGTTAAGATTGAATATGTAGATAAGACAAGCAGGAAGCTGACTCCCAAAAAGgtaagaagaacctgtggaaatggtcagcccactggtgacagtgtatatga #### Sart1_ID959_16 --> 2 - 2 Original Alignment gaCTGCTGGAGACCACAGTA-CAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGat gctccaagaattcaacctgagcccaggattcagtcgctttctactcttaggaCTGCTAGAGACCACAGTACCAAAAGGTTGCCTGGGTGAAGGCTCCCAATAGGACCTTGCCTTCAGCAGTGTACTGCATAGAGGATAAGatgtatctgttatcaaggcaacatgccatagggaccgctatgaacatgggga Alignment from CESAR gaCTGCTGGAGACCACAGTA-CAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGat gctccaagaattcaacctgagcccaggattcagtcgctttctactcttaggaCTGCTAGAGACCACAGTACCAAAAGGTTGCCTGGGTGAAGGCTCCCAATAGGACCTTGCCTTCAGCAGTGTACTGCATAGAGGATAAGatgtatctgttatcaaggcaacatgccatagggaccgctatgaacatgggga Alignment from Spaln_aa2Genome GACTGCTGGAGACCACAGTA-CAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT gctccaagaattcaacctgagcccaggattcagtcgctttctactcttagGACTGCTAGAGACCACAGTAcCAAAAGGTTGCCTGGGTGAAGGCTCCCAATAGGACCTTGCCTTCAGCAGTGTACTGCATAGAGGATAAGATgtatctgttatcaaggcaacatgccatagggaccgctatgaacatgggga Alignment from Spaln_nt2Genome GACTGCTGGAGACCACAGTA-CAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT gctccaagaattcaacctgagcccaggattcagtcgctttctactcttagGACTGCTAGAGACCACAGTACCAAAAGGTTGCCTGGGTGAAGGCTCCCAATAGGACCTTGCCTTCAGCAGTGTACTGCATAGAGGATAAGATgtatctgttatcaaggcaacatgccatagggaccgctatgaacatgggga Alignment from Pairagon GACTGCTGGAGACCACAGTA-CAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT gctccaagaattcaacctgagcccaggattcagtcgctttctactcttagGACTGCTAGAGACCACAGTACCAAAAGGTTGCCTGGGTGAAGGCTCCCAATAGGACCTTGCCTTCAGCAGTGTACTGCATAGAGGATAAGATgtatctgttatcaaggcaacatgccatagggaccgctatgaacatgggga Alignment from Exonerate_protein2genome GACTGCTGGAGACCACAGTA-CAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT gctccaagaattcaacctgagcccaggattcagtcgctttctactcttagGACTGCTAGAGACCACAGTACCAAAAGGTTGCCTGGGTGAAGGCTCCCAATAGGACCTTGCCTTCAGCAGTGTACTGCATAGAGGATAAGATgtatctgttatcaaggcaacatgccatagggaccgctatgaacatgggga Alignment from Exonerate_coding2genome GACTGCTGGAGACCACAGTA-CAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT gctccaagaattcaacctgagcccaggattcagtcgctttctactcttagGACTGCTAGAGACCACAGTACCAAAAGGTTGCCTGGGTGAAGGCTCCCAATAGGACCTTGCCTTCAGCAGTGTACTGCATAGAGGATAAGATgtatctgttatcaaggcaacatgccatagggaccgctatgaacatgggga Alignment from GeneWise GTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT gctccaagaattcaacctgagcccaggattcagtcgctttctactcttaggactgctagagaccacagTACCAAAAGGTTGCCTGGGTGAAGGCTCCCAATAGGACCTTGCCTTCAGCAGTGTACTGCATAGAGGATAAGATgtatctgttatcaaggcaacatgccatagggaccgctatgaacatgggga #### Sart1_ID960_15 --> 0 - 1 Original Alignment TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGA-GGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAg tggcagggggatatggggctaccttctctgctgtccccttttccatgcagTTCTCTGCTTCTTCTACCACTATCCTGGATGAGGAGCCCATCGTGAACCGACGGGCTAGCTGCTGCCCTGCTCCTATGTCAGAACAGAggtaatggtttgggaggggtgctctggcagtgtgtatatttcatccaggac Alignment from CESAR TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGA-GGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAg tggcagggggatatggggctaccttctctgctgtccccttttccatgcagTTCTCTGCTTCTTCTACCACTATCCTGGATGAGGAGCCCATCGTGAACCGACGGGCTAGCTGCTGCCCTGCTCCTATGTCAGAACAGAggtaatggtttgggaggggtgctctggcagtgtgtatatttcatccaggac Alignment from Spaln_aa2Genome TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGA-GGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggcagggggatatggggctaccttctctgctgtccccttttccatgcagTTCTCTGCTTCTTCTACCACTATCCTGGATGAGGAGCCCATCGTGAACCGAcGGGCTAGCTGCTGCCCTGCTCCTATGTCAGAACAGAGgtaatggtttgggaggggtgctctggcagtgtgtatatttcatccaggac Alignment from Spaln_nt2Genome TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGA-GGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggcagggggatatggggctaccttctctgctgtccccttttccatgcagTTCTCTGCTTCTTCTACCACTATCCTGGATGAGGAGCCCATCGTGAACCGACGGGCTAGCTGCTGCCCTGCTCCTATGTCAGAACAGAGgtaatggtttgggaggggtgctctggcagtgtgtatatttcatccaggac Alignment from Pairagon TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGA-GGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggcagggggatatggggctaccttctctgctgtccccttttccatgcagTTCTCTGCTTCTTCTACCACTATCCTGGATGAGGAGCCCATCGTGAACCGACGGGCTAGCTGCTGCCCTGCTCCTATGTCAGAACAGAGgtaatggtttgggaggggtgctctggcagtgtgtatatttcatccaggac Alignment from Exonerate_protein2genome TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGA-GGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggcagggggatatggggctaccttctctgctgtccccttttccatgcagTTCTCTGCTTCTTCTACCACTATCCTGGATGAGGAGCCCATCGTGAACCGACGGGCTAGCTGCTGCCCTGCTCCTATGTCAGAACAGAGgtaatggtttgggaggggtgctctggcagtgtgtatatttcatccaggac Alignment from Exonerate_coding2genome TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAACAGA-GGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggcagggggatatggggctaccttctctgctgtccccttttccatgcagTTCTCTGCTTCTTCTACCACTATCCTGGATGAGGAGCCCATCGTGAACCGACGGGCTAGCTGCTGCCCTGCTCCTATGTCAGAACAGAGgtaatggtttgggaggggtgctctggcagtgtgtatatttcatccaggac Alignment from GeneWise TTCTCTGCTTCCTCTACCACCATCCTGGATGAGGAGCCCATCGTGAAC-AGAGGGCTGGCTGCTGCCCTGCTCCTGTGTCAGAACAAAG tggcagggggatatggggctaccttctctgctgtccccttttccatgcagTTCTCTGCTTCTTCTACCACTATCCTGGATGAGGAGCCCATCGTGAACCGACGGGCTAGCTGCTGCCCTGCTCCTATGTCAGAACAGAGgtaatggtttgggaggggtgctctggcagtgtgtatatttcatccaggac #### Sart1_ID961_14 --> 0 - 0 Original Alignment GACTTTGAAAGGGAT-GAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tagcaggtagggtggagtccgtccatgaactccttctcttctggttttagGACTTTGAGAGGGATCGAGGAGCACTCAGCCAATGGTGGCTCTGAATCGGATGGGGAAGAGAACATTGGCTGGAGCACAGTCAACCTGGATGATGAGAAGCAACCTCAGGATgtacttactgatggccatgggtgaaggggatccagggtgactgttcagta Alignment from CESAR GACTTTGAAAGGGAT-GAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tagcaggtagggtggagtccgtccatgaactccttctcttctggttttagGACTTTGAGAGGGATCGAGGAGCACTCAGCCAATGGTGGCTCTGAATCGGATGGGGAAGAGAACATTGGCTGGAGCACAGTCAACCTGGATGATGAGAAGCAACCTCAGGATgtacttactgatggccatgggtgaaggggatccagggtgactgttcagta Alignment from Spaln_aa2Genome GACTTTGAAAGGGAT-GAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tagcaggtagggtggagtccgtccatgaactccttctcttctggttttagGACTTTGAGAGGGATcGAGGAGCACTCAGCCAATGGTGGCTCTGAATCGGATGGGGAAGAGAACATTGGCTGGAGCACAGTCAACCTGGATGATGAGAAGCAACCTCAGGATgtacttactgatggccatgggtgaaggggatccagggtgactgttcagta Alignment from Spaln_nt2Genome GACTTTGAAAGGGAT-GAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tagcaggtagggtggagtccgtccatgaactccttctcttctggttttagGACTTTGAGAGGGATCGAGGAGCACTCAGCCAATGGTGGCTCTGAATCGGATGGGGAAGAGAACATTGGCTGGAGCACAGTCAACCTGGATGATGAGAAGCAACCTCAGGATgtacttactgatggccatgggtgaaggggatccagggtgactgttcagta Alignment from Pairagon GACTTTGAAAGGGAT-GAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tagcaggtagggtggagtccgtccatgaactccttctcttctggttttagGACTTTGAGAGGGATCGAGGAGCACTCAGCCAATGGTGGCTCTGAATCGGATGGGGAAGAGAACATTGGCTGGAGCACAGTCAACCTGGATGATGAGAAGCAACCTCAGGATgtacttactgatggccatgggtgaaggggatccagggtgactgttcagta Alignment from Exonerate_protein2genome GACTTTGAAAGGGAT-GAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tagcaggtagggtggagtccgtccatgaactccttctcttctggttttagGACTTTGAGAGGGATCGAGGAGCACTCAGCCAATGGTGGCTCTGAATCGGATGGGGAAGAGAACATTGGCTGGAGCACAGTCAACCTGGATGATGAGAAGCAACCTCAGGATgtacttactgatggccatgggtgaaggggatccagggtgactgttcagta Alignment from Exonerate_coding2genome GACTTTGAAAGGGAT-GAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tagcaggtagggtggagtccgtccatgaactccttctcttctggttttagGACTTTGAGAGGGATCGAGGAGCACTCAGCCAATGGTGGCTCTGAATCGGATGGGGAAGAGAACATTGGCTGGAGCACAGTCAACCTGGATGATGAGAAGCAACCTCAGGATgtacttactgatggccatgggtgaaggggatccagggtgactgttcagta Alignment from GeneWise -AGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAGCATCAGGAT tagcaggtagggtggagtccgtccatgaactccttctcttctggttttaggactttgagAGGGATCGAGGAGCACTCAGCCAATGGTGGCTCTGAATCGGATGGGGAAGAGAACATTGGCTGGAGCACAGTCAACCTGGATGATGAGAAGCAACCTCAGGATgtacttactgatggccatgggtgaaggggatccagggtgactgttcagta #### Sart1_ID962_13 --> 0 - 0 Original Alignment GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACC-ATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG atcctgtgaactcaggatctgcccacagctccatggtgcctctatcttagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCGTCAGCGTGGCTGGGAGGAGGGGGAGGACCCAAAGAGGAAGGGGACACTCAGTGTTCAATGCCACCTCGGAATTCTGCTGTACACTAGGGGAGTCTCCCACCTATGGGTTGGCAGGTAACCGTGAGGGGCAGGAGGAGCTGATGgtaaggcaagagtttcctggcttttattgttaggctgatgatgcttctag Alignment from CESAR GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATC-GTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG atcctgtgaactcaggatctgcccacagctccatggtgcctctatcttagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCGTCAGCGTGGCTGGGAGGAGGGGGAGGACCCAAAGAGGAAGGGGACACTCAGTGTTCAATGCCACCTCGGAATTCTGCTGTACACTAGGGGAGTCTCCCACCTATGGGTTGGCAGGTAACCGTGAGGGGCAGGAGGAGCTGATGgtaaggcaagagtttcctggcttttattgttaggctgatgatgcttctag Alignment from Spaln_aa2Genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATC-GTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG atcctgtgaactcaggatctgcccacagctccatggtgcctctatcttagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCGTCAGCGTGGCTGGGAGGAGGGGGAGGACCCAAAGAGGAAGGGGACACTCaGTGTTCAATGCCACCTCGGAATTCTGCTGTACACTAGGGGAGTCTCCCACCTATGGGTTGGCAGGTAACCGTGAGGGGCAGGAGGAGCTGATGgtaaggcaagagtttcctggcttttattgttaggctgatgatgcttctag Alignment from Spaln_nt2Genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATC-GTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG atcctgtgaactcaggatctgcccacagctccatggtgcctctatcttagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCGTCAGCGTGGCTGGGAGGAGGGGGAGGACCCAAAGAGGAAGGGGACACTCAGTGTTCAATGCCACCTCGGAATTCTGCTGTACACTAGGGGAGTCTCCCACCTATGGGTTGGCAGGTAACCGTGAGGGGCAGGAGGAGCTGATGgtaaggcaagagtttcctggcttttattgttaggctgatgatgcttctag Alignment from Pairagon GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATC-GTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG atcctgtgaactcaggatctgcccacagctccatggtgcctctatcttagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCGTCAGCGTGGCTGGGAGGAGGGGGAGGACCCAAAGAGGAAGGGGACACTCAGTGTTCAATGCCACCTCGGAATTCTGCTGTACACTAGGGGAGTCTCCCACCTATGGGTTGGCAGGTAACCGTGAGGGGCAGGAGGAGCTGATGgtaaggcaagagtttcctggcttttattgttaggctgatgatgcttctag Alignment from Exonerate_protein2genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATC-GTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG atcctgtgaactcaggatctgcccacagctccatggtgcctctatcttagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCGTCAGCGTGGCTGGGAGGAGGGGGAGGACCCAAAGAGGAAGGGGACACTCAGTGTTCAATGCCACCTCGGAATTCTGCTGTACACTAGGGGAGTCTCCCACCTATGGGTTGGCAGGTAACCGTGAGGGGCAGGAGGAGCTGATGgtaaggcaagagtttcctggcttttattgttaggctgatgatgcttctag Alignment from Exonerate_coding2genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATC-GTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG atcctgtgaactcaggatctgcccacagctccatggtgcctctatcttagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCGTCAGCGTGGCTGGGAGGAGGGGGAGGACCCAAAGAGGAAGGGGACACTCAGTGTTCAATGCCACCTCGGAATTCTGCTGTACACTAGGGGAGTCTCCCACCTATGGGTTGGCAGGTAACCGTGAGGGGCAGGAGGAGCTGATGgtaaggcaagagtttcctggcttttattgttaggctgatgatgcttctag Alignment from GeneWise GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACC-ATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAGCAGGAAGAGCTCATG atcctgtgaactcaggatctgcccacagctccatggtgcctctatcttagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCGTCAGCGTGGCTGGGAGGAGGGGGAGGACCCAAAGAGGAAGGGGACACTCAGTGTTCAATGCCACCTCGGAATTCTGCTGTACACTAGGGGAGTCTCCCACCTATGGGTTGGCAGGTAACCGTGAGGGGCAGGAGGAGCTGATGgtaaggcaagagtttcctggcttttattgttaggctgatgatgcttctag #### Sart1_ID964_11 --> 1 - 1 Original Alignment gCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAG-GAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAg ggggcagcttaaaagatacaatttacaccagttggactttgtcactgcaggCTTCGGGGCCGGGGTAGACACCGAGTTCCC------AAGCGAGGAGACCCTTGAGGATGAGGAGAAGGACCTTGTGGCCAAGCCACCACCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAggtaggtggttgagtaacaggggccagggtgaatctgcaggcaagggcagt Alignment from CESAR gCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAg ggggcagcttaaaagatacaatttacaccagttggactttgtcactgcaggCTTCGGGGCCGGGGTAGACACCGAGTTCCCAAG-----CGAGGAGACCCTTGAGGATGAGGAGAAGGACCTTGTGGCCAAGCCACCACCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAggtaggtggttgagtaacaggggccagggtgaatctgcaggcaagggcagt Alignment from Spaln_aa2Genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG ggggcagcttaaaagatacaatttacaccagttggactttgtcactgcagGCTTCGGGGCCGGGGTAGACACCGAGTTCCCAAGC-----GAGGAGACCCTTGAGGATGAGGAGAAGGACCTTGTGGCCAAGCCACCACCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAGgtaggtggttgagtaacaggggccagggtgaatctgcaggcaagggcagt Alignment from Spaln_nt2Genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG ggggcagcttaaaagatacaatttacaccagttggactttgtcactgcagGCTTCGGGGCCGGGGTAGACACCGAGTTCCCAAG-----CGAGGAGACCCTTGAGGATGAGGAGAAGGACCTTGTGGCCAAGCCACCACCATCAGATGACACTCGAGT------CATGGACATCAGTGATGAAGgtaggtggttgagtaacaggggccagggtgaatctgcaggcaagggcagt Alignment from Pairagon GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG ggggcagcttaaaagatacaatttacaccagttggactttgtcactgcagGCTTCGGGGCCGGGGTAGACACCGAGTTCCCAAG-----CGAGGAGACCCTTGAGGATGAGGAGAAGGACCTTGTGGCCAAGCCACCACCATCAGATGACACTCGAGT------CATGGACATCAGTGATGAAGgtaggtggttgagtaacaggggccagggtgaatctgcaggcaagggcagt Alignment from Exonerate_protein2genome GCTCCGGGGCCGGGGTCGGCGCCGAGTT-CCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG ggggcagcttaaaagatacaatttacaccagttggactttgtcactgcagGCTTCGGGGCCGGGGTAGACACCGAGTTCCCA------AGCGAGGAGACCCTTGAGGATGAGGAGAAGGACCTTGTGGCCAAGCCACCACCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAGgtaggtggttgagtaacaggggccagggtgaatctgcaggcaagggcagt Alignment from Exonerate_coding2genome GCTCCGGGGCCGGGGTCGGCGCCGAGTT-CCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG ggggcagcttaaaagatacaatttacaccagttggactttgtcactgcagGCTTCGGGGCCGGGGTAGACACCGAGTTCCCA------AGCGAGGAGACCCTTGAGGATGAGGAGAAGGACCTTGTGGCCAAGCCACCACCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAGgtaggtggttgagtaacaggggccagggtgaatctgcaggcaagggcagt Alignment from GeneWise GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG ggggcagcttaaaagatacaatttacaccagttggactttgtcactgcagGCTTCGGGGCCGGGGTAGACACCGAGTTCCCAAGC--GAGGAG---ACCCTTGAGGATGAGGAGAAGGACCTTGTGGCCAAGCCACCACCATCAGATGACACTCGAGTC------ATGGACATCAGTGATGAAGgtaggtggttgagtaacaggggccagggtgaatctgcaggcaagggcagt #### Sart1_ID965_10 --> 0 - 2 Original Alignment GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAG-ACTCAGGATGGGGACTTTGGATCCag tctgaaactaagagggcatactcactccaggccctcttgtgtctctccagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAAAAAACCAGAAAGAAGGAGCAGGAGGTGATAATGCGGGCTGATGACTTACTGCCTCTGGGTGATCAGCACTCAGGATGGG---TTTGGATCAaggtgagtatggatgcagtagtgggtgtgaggtggggcagcttaaaagatac Alignment from CESAR GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAG-ACTCAGGATGGGGACTTTGGATCCag tctgaaactaagagggcatactcactccaggccctcttgtgtctctccagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAAAAAACCAGAAAGAAGGAGCAGGAGGTGATAATGCGGGCTGATGACTTACTGCCTCTGGGTGATCAGCACTCAGGATGGG---TTTGGATCAaggtgagtatggatgcagtagtgggtgtgaggtggggcagcttaaaagatac Alignment from Spaln_aa2Genome GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAG-ACTCAGGATGGGGACTTTGGATCCAG tctgaaactaagagggcatactcactccaggccctcttgtgtctctccagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAAAAAACCAGAAAGAAGGAGCAGGAGGTGATAATGCGGGCTGATGACTTACTGCCTCTGGGTGATCAGcACTCAGGATGGG---TTTGGATCAAGgtgagtatggatgcagtagtgggtgtgaggtggggcagcttaaaagatac Alignment from Spaln_nt2Genome GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAG-ACTCAGGATGGGGACTTTGGATCCAG tctgaaactaagagggcatactcactccaggccctcttgtgtctctccagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAAAAAACCAGAAAGAAGGAGCAGGAGGTGATAATGCGGGCTGATGACTTACTGCCTCTGGGTGATCAGCACTCAGGATGGG---TTTGGATCAAGgtgagtatggatgcagtagtgggtgtgaggtggggcagcttaaaagatac Alignment from Pairagon GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAG-ACTCAGGATGGGGACTTTGGATCCAG tctgaaactaagagggcatactcactccaggccctcttgtgtctctccagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAAAAAACCAGAAAGAAGGAGCAGGAGGTGATAATGCGGGCTGATGACTTACTGCCTCTGGGTGATCAGCACTCAGGATGGG---TTTGGATCAAGgtgagtatggatgcagtagtgggtgtgaggtggggcagcttaaaagatac Alignment from Exonerate_protein2genome GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAG-ACTCAGGATGGGGACTTTGGATCCAG tctgaaactaagagggcatactcactccaggccctcttgtgtctctccagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAAAAAACCAGAAAGAAGGAGCAGGAGGTGATAATGCGGGCTGATGACTTACTGCCTCTGGGTGATCAGCACTCAGGATGGG---TTTGGATCAAGgtgagtatggatgcagtagtgggtgtgaggtggggcagcttaaaagatac Alignment from Exonerate_coding2genome GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAG-ACTCAGGATGGGGACTTTGGATCCAG tctgaaactaagagggcatactcactccaggccctcttgtgtctctccagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAAAAAACCAGAAAGAAGGAGCAGGAGGTGATAATGCGGGCTGATGACTTACTGCCTCTGGGTGATCAGCACTCAGGATGGG---TTTGGATCAAGgtgagtatggatgcagtagtgggtgtgaggtggggcagcttaaaagatac Alignment from GeneWise GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGACCAG-ACTCAGGATGGGGACTTTGGATCCAG tctgaaactaagagggcatactcactccaggccctcttgtgtctctccagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAAAAAACCAGAAAGAAGGAGCAGGAGGTGATAATGCGGGCTGATGACTTACTGCCTCTGGGTGATCAGCACTCAGGATGGG---TTTGGATCAAGgtgagtatggatgcagtagtgggtgtgaggtggggcagcttaaaagatac #### Sart1_ID967_8 --> 2 - 0 Original Alignment ggGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGAC-GATTTGGCACAG ggagatgtgacatgacaaatggtgtctggatgtttcatgcctccctgcagggGTACTCCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTAGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCTGATTACCTGACCTATGTGGAAGATGAGGGTGTGGATCGACTTGGCACAGgtaagtctgttgagtctgggagatatccactggggctgatggtgcttgct Alignment from CESAR ggGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGAC-GATTTGGCACAG ggagatgtgacatgacaaatggtgtctggatgtttcatgcctccctgcagggGTACTCCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTAGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCTGATTACCTGACCTATGTGGAAGATGAGGGTGTGGATCGACTTGGCACAGgtaagtctgttgagtctgggagatatccactggggctgatggtgcttgct Alignment from Spaln_aa2Genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGAC-GATTTGGCACAG ggagatgtgacatgacaaatggtgtctggatgtttcatgcctccctgcagGGGTACTCCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTAGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCTGATTACCTGACCTATGTGGAAGATGAGGGTGTGGATcGACTTGGCACAGgtaagtctgttgagtctgggagatatccactggggctgatggtgcttgct Alignment from Spaln_nt2Genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGA-CGATTTGGCACAG ggagatgtgacatgacaaatggtgtctggatgtttcatgcctccctgcagGGGTACTCCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTAGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCTGATTACCTGACCTATGTGGAAGATGAGGGTGTGGATCGACTTGGCACAGgtaagtctgttgagtctgggagatatccactggggctgatggtgcttgct Alignment from Pairagon GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGA-CGATTTGGCACAG ggagatgtgacatgacaaatggtgtctggatgtttcatgcctccctgcagGGGTACTCCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTAGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCTGATTACCTGACCTATGTGGAAGATGAGGGTGTGGATCGACTTGGCACAGgtaagtctgttgagtctgggagatatccactggggctgatggtgcttgct Alignment from Exonerate_protein2genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGAC-GATTTGGCACAG ggagatgtgacatgacaaatggtgtctggatgtttcatgcctccctgcagGGGTACTCCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTAGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCTGATTACCTGACCTATGTGGAAGATGAGGGTGTGGATCGACTTGGCACAGgtaagtctgttgagtctgggagatatccactggggctgatggtgcttgct Alignment from Exonerate_coding2genome GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGAC-GATTTGGCACAG ggagatgtgacatgacaaatggtgtctggatgtttcatgcctccctgcagGGGTACTCCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTAGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCTGATTACCTGACCTATGTGGAAGATGAGGGTGTGGATCGACTTGGCACAGgtaagtctgttgagtctgggagatatccactggggctgatggtgcttgct Alignment from GeneWise GGGTACTGCAGGACGGGGAGGACGTGCTGGTGAATGTGAACATGGTGGACAAGGAGCGGGCGGACAAGAACGTGGAGCTTCGGAAAAAGAAGCCTGACTACCTGCCCTATGCGGAAGATGAGAGTGTGGACGATTTGGCACAG--------- ggagatgtgacatgacaaatggtgtctggatgtttcatgcctccctgcagGGGTACTCCAGGACGGGGAAGATGTGCTGGTGAATGTGAACATGGTAGACAAGGAGCGGGCAGATAAAAATGTGGAGCTTCGGAAAGAGAAGCCTGATTACCTGACCTATGTGGAAGATGAGGGTGTGGATCGACTTGGCACAGGTAAGTCTgttgagtctgggagatatccactggggctgatggtgcttgct #### Sart1_ID968_7 --> 0 - 1 Original Alignment GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACAT-GCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAg cccggattcagctggtacctggcttttgctcatgtgtgcttgcccaccagGACCTGTACAGTGCCCGAGACCTGCAAGGCCTCACTGTGGAACATCGCTATTGATTCTTTTCAAGAAGGGGAGACTGTGGTTCTCACCCTCAAGGACAAAggtaaagggtatctggtaaccctgcttaggctagaatacaatggagatgtg Alignment from CESAR GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACAT-GCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAg cccggattcagctggtacctggcttttgctcatgtgtgcttgcccaccagGACCTGTACAGTGCCCGAGACCTGCAAGGCCTCACTGTGGAACATCGCTATTGATTCTTTTCAAGAAGGGGAGACTGTGGTTCTCACCCTCAAGGACAAAggtaaagggtatctggtaaccctgcttaggctagaatacaatggagatgtg Alignment from Spaln_aa2Genome GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACAT-GCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG cccggattcagctggtacctggcttttgctcatgtgtgcttgcccaccagGACCTGTACAGTGCCCGAGACCTGCAAGGCCTCACTGTGGAACATcGCTATTGATTCTTTTCAAGAAGGGGAGACTGTGGTTCTCACCCTCAAGGACAAAGgtaaagggtatctggtaaccctgcttaggctagaatacaatggagatgtg Alignment from Spaln_nt2Genome GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACAT-GCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG cccggattcagctggtacctggcttttgctcatgtgtgcttgcccaccagGACCTGTACAGTGCCCGAGACCTGCAAGGCCTCACTGTGGAACATCGCTATTGATTCTTTTCAAGAAGGGGAGACTGTGGTTCTCACCCTCAAGGACAAAGgtaaagggtatctggtaaccctgcttaggctagaatacaatggagatgtg Alignment from Pairagon GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACAT-GCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG cccggattcagctggtacctggcttttgctcatgtgtgcttgcccaccagGACCTGTACAGTGCCCGAGACCTGCAAGGCCTCACTGTGGAACATCGCTATTGATTCTTTTCAAGAAGGGGAGACTGTGGTTCTCACCCTCAAGGACAAAGgtaaagggtatctggtaaccctgcttaggctagaatacaatggagatgtg Alignment from Exonerate_protein2genome GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACAT-GCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG cccggattcagctggtacctggcttttgctcatgtgtgcttgcccaccagGACCTGTACAGTGCCCGAGACCTGCAAGGCCTCACTGTGGAACATCGCTATTGATTCTTTTCAAGAAGGGGAGACTGTGGTTCTCACCCTCAAGGACAAAGgtaaagggtatctggtaaccctgcttaggctagaatacaatggagatgtg Alignment from Exonerate_coding2genome GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACAT-GCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG cccggattcagctggtacctggcttttgctcatgtgtgcttgcccaccagGACCTGTACAGTGCCCGAGACCTGCAAGGCCTCACTGTGGAACATCGCTATTGATTCTTTTCAAGAAGGGGAGACTGTGGTTCTCACCCTCAAGGACAAAGgtaaagggtatctggtaaccctgcttaggctagaatacaatggagatgtg Alignment from GeneWise GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACAT-GCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG cccggattcagctggtacctggcttttgctcatgtgtgcttgcccaccagGACCTGTACAGTGCCCGAGACCTGCAAGGCCTCACTGTGGAACATCGCTATTGATTCTTTTCAAGAAGGGGAGACTGTGGTTCTCACCCTCAAGGACAAAGgtaaagggtatctggtaaccctgcttaggctagaatacaatggagatgtg #### Sart1_ID969_6 --> 0 - 0 Original Alignment GCTAAGCTACTAGAG-GAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG cggggcatcttgtgagtttttggacacctctttctcccttgcaccaacagGCTAAGCTATTGGAGCGAGATGGGTCAAGAGTTTGGTGTGAGCACTTTAGTTGAGGAGGAGTTTGAGCAGAAGCGACAGgtaaggaccaattaccagaattatctggtagtcatcatttcaattttggg Alignment from CESAR GCTAAGCTACTAGAG-GAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG cggggcatcttgtgagtttttggacacctctttctcccttgcaccaacagGCTAAGCTATTGGAGCGAGATGGGTCAAGAGTTTGGTGTGAGCACTTTAGTTGAGGAGGAGTTTGAGCAGAAGCGACAGgtaaggaccaattaccagaattatctggtagtcatcatttcaattttggg Alignment from Spaln_aa2Genome ATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG cggggcatcttgtgagtttttggacacctctttctcccttgcaccaacaggctaagctattggagcgagATGGGTCAAGAGTTTGGTGTGAGCACTTTAGTTGAGGAGGAGTTTGAGCAGAAGCGACAGgtaaggaccaattaccagaattatctggtagtcatcatttcaattttggg Alignment from Spaln_nt2Genome GCTAAGCTACTAGAG-GAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG cggggcatcttgtgagtttttggacacctctttctcccttgcaccaacagGCTAAGCTATTGGAGCGAGATGGGTCAAGAGTTTGGTGTGAGCACTTTAGTTGAGGAGGAGTTTGAGCAGAAGCGACAGgtaaggaccaattaccagaattatctggtagtcatcatttcaattttggg Alignment from Pairagon GCTAAGCTACTAGAG-GAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG cggggcatcttgtgagtttttggacacctctttctcccttgcaccaacagGCTAAGCTATTGGAGCGAGATGGGTCAAGAGTTTGGTGTGAGCACTTTAGTTGAGGAGGAGTTTGAGCAGAAGCGACAGgtaaggaccaattaccagaattatctggtagtcatcatttcaattttggg Alignment from Exonerate_protein2genome GCTAAGCTACTAGAG-GAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG cggggcatcttgtgagtttttggacacctctttctcccttgcaccaacagGCTAAGCTATTGGAGCGAGATGGGTCAAGAGTTTGGTGTGAGCACTTTAGTTGAGGAGGAGTTTGAGCAGAAGCGACAGgtaaggaccaattaccagaattatctggtagtcatcatttcaattttggg Alignment from Exonerate_coding2genome GCTAAGCTACTAGAG-GAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG cggggcatcttgtgagtttttggacacctctttctcccttgcaccaacagGCTAAGCTATTGGAGCGAGATGGGTCAAGAGTTTGGTGTGAGCACTTTAGTTGAGGAGGAGTTTGAGCAGAAGCGACAGgtaaggaccaattaccagaattatctggtagtcatcatttcaattttggg Alignment from GeneWise ATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG cggggcatcttgtgagtttttggacacctctttctcccttgcaccaacaggctaagctattggagcgagATGGGTCAAGAGTTTGGTGTGAGCACTTTAGTTGAGGAGGAGTTTGAGCAGAAGCGACAGgtaaggaccaattaccagaattatctggtagtcatcatttcaattttggg #### Sec31b_ID9028_24 --> 0 - 0 Original Alignment AAAACAAAAAGGAAGCTG-GAGGAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctagtgtcaggagccaatattaggaccacttgtatttcttctcctcctagAAAACAAAAAAGAAGCTACGAGGAGGCAGCCCGACACCTTGAATGTCTGTATGAGAAGCTTTGTGAAGGGACAgtctgtcctctgtgcaggggacctacacttctacctagttccaaggagat Alignment from CESAR AAAACAAAAAGGAAGCTG-GAGGAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctagtgtcaggagccaatattaggaccacttgtatttcttctcctcctagAAAACAAAAAAGAAGCTACGAGGAGGCAGCCCGACACCTTGAATGTCTGTATGAGAAGCTTTGTGAAGGGACAgtctgtcctctgtgcaggggacctacacttctacctagttccaaggagat Alignment from Spaln_aa2Genome AAAACAAAAAGGAAGCTG-GAGGAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctagtgtcaggagccaatattaggaccacttgtatttcttctcctcctagAAAACAAAAAAGAAGCTAcGAGGAGGCAGCCCGACACCTTGAATGTCTGTATGAGAAGCTTTGTGAAGGGACAgtctgtcctctgtgcaggggacctacacttctacctagttccaaggagat Alignment from Spaln_nt2Genome AAAACAAAAAGGAAGCTG-GAGGAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctagtgtcaggagccaatattaggaccacttgtatttcttctcctcctagAAAACAAAAAAGAAGCTACGAGGAGGCAGCCCGACACCTTGAATGTCTGTATGAGAAGCTTTGTGAAGGGACAgtctgtcctctgtgcaggggacctacacttctacctagttccaaggagat Alignment from Pairagon AAAACAAAAAGGAAGCTG-GAGGAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctagtgtcaggagccaatattaggaccacttgtatttcttctcctcctagAAAACAAAAAAGAAGCTACGAGGAGGCAGCCCGACACCTTGAATGTCTGTATGAGAAGCTTTGTGAAGGGACAgtctgtcctctgtgcaggggacctacacttctacctagttccaaggagat Alignment from Exonerate_protein2genome AAAACAAAAAGGAAGCTG-GAGGAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctagtgtcaggagccaatattaggaccacttgtatttcttctcctcctagAAAACAAAAAAGAAGCTACGAGGAGGCAGCCCGACACCTTGAATGTCTGTATGAGAAGCTTTGTGAAGGGACAgtctgtcctctgtgcaggggacctacacttctacctagttccaaggagat Alignment from Exonerate_coding2genome AAAACAAAAAGGAAGCTG-GAGGAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctagtgtcaggagccaatattaggaccacttgtatttcttctcctcctagAAAACAAAAAAGAAGCTACGAGGAGGCAGCCCGACACCTTGAATGTCTGTATGAGAAGCTTTGTGAAGGGACAgtctgtcctctgtgcaggggacctacacttctacctagttccaaggagat Alignment from GeneWise AAAACAAAAAGGAAG-CTGGAGGAGGCAGCCCGCCGCCTAGAATGTCTGTATGAGAAGCTTTGCGAGGGGACA ctagtgtcaggagccaatattaggaccacttgtatttcttctcctcctagAAAACAAAAAAGAAGCTACGAGGAGGCAGCCCGACACCTTGAATGTCTGTATGAGAAGCTTTGTGAAGGGACAgtctgtcctctgtgcaggggacctacacttctacctagttccaaggagat #### Sec31b_ID9029_23 --> 0 - 0 Original Alignment CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCA-GAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtgggatttccattaggtcgggattgaatctatctgctacctcagCAACTACAGCCATTGCCTCCTGAGAGGACAGAGAAAGAGTCGCCCGCACGAGCATCAGTGTGTTAAGGACAGTTTCGATGCACTCCTCCAGCACTGCTCCTTGACTGCAACTAGCCTTgtaagtacaagtcttcatttcctcaagctctgaactgttcagggccacag Alignment from CESAR CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCA-GAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtgggatttccattaggtcgggattgaatctatctgctacctcagCAACTACAGCCATTGCCTCCTGAGAGGACAGAGAAAGAGTCGCCCGCACGAGCATCAGTGTGTTAAGGACAGTTTCGATGCACTCCTCCAGCACTGCTCCTTGACTGCAACTAGCCTTgtaagtacaagtcttcatttcctcaagctctgaactgttcagggccacag Alignment from Spaln_aa2Genome CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTG-CCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtgggatttccattaggtcgggattgaatctatctgctacctcagCAACTACAGCCATTGCCTCCTGAGAGGACAGAGAAAGAGTCGcCCGCACGAGCATCAGTGTGTTAAGGACAGTTTCGATGCACTCCTCCAGCACTGCTCCTTGACTGCAACTAGCCTTgtaagtacaagtcttcatttcctcaagctctgaactgttcagggccacag Alignment from Spaln_nt2Genome CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCA-GAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtgggatttccattaggtcgggattgaatctatctgctacctcagCAACTACAGCCATTGCCTCCTGAGAGGACAGAGAAAGAGTCGCCCGCACGAGCATCAGTGTGTTAAGGACAGTTTCGATGCACTCCTCCAGCACTGCTCCTTGACTGCAACTAGCCTTgtaagtacaagtcttcatttcctcaagctctgaactgttcagggccacag Alignment from Pairagon CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCA-GAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtgggatttccattaggtcgggattgaatctatctgctacctcagCAACTACAGCCATTGCCTCCTGAGAGGACAGAGAAAGAGTCGCCCGCACGAGCATCAGTGTGTTAAGGACAGTTTCGATGCACTCCTCCAGCACTGCTCCTTGACTGCAACTAGCCTTgtaagtacaagtcttcatttcctcaagctctgaactgttcagggccacag Alignment from Exonerate_protein2genome CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCA-GAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtgggatttccattaggtcgggattgaatctatctgctacctcagCAACTACAGCCATTGCCTCCTGAGAGGACAGAGAAAGAGTCGCCCGCACGAGCATCAGTGTGTTAAGGACAGTTTCGATGCACTCCTCCAGCACTGCTCCTTGACTGCAACTAGCCTTgtaagtacaagtcttcatttcctcaagctctgaactgttcagggccacag Alignment from Exonerate_coding2genome CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCA-GAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtgggatttccattaggtcgggattgaatctatctgctacctcagCAACTACAGCCATTGCCTCCTGAGAGGACAGAGAAAGAGTCGCCCGCACGAGCATCAGTGTGTTAAGGACAGTTTCGATGCACTCCTCCAGCACTGCTCCTTGACTGCAACTAGCCTTgtaagtacaagtcttcatttcctcaagctctgaactgttcagggccacag Alignment from GeneWise CAACTCCAGCCACTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCC-CCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtgggatttccattaggtcgggattgaatctatctgctacctcagCAACTACAGCCATTGCCTCCTGAGAGGACAGAGAAAGAGTCGCCCGCACGAGCATCAGTGTGTTAAGGACAGTTTCGATGCACTCCTCCAGCACTGCTCCTTGACTGCAACTAGCCTTgtaagtacaagtcttcatttcctcaagctctgaactgttcagggccacag #### Sec31b_ID9031_21 --> 2 - 0 Original Alignment gaCCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAAC-CTCCAAAGGAAAAAG acattgtcaaggctcttaatgcctagaattatccctgtttttctctgcaggaCCCCAAGACTCATGGAAAGTCTCTCCTGCCTCCCAGGGAAACCCTTCAAAGGAAAAAAgtaagtgcacctttccctaaccattaacccatttcataattcagcccccc Alignment from CESAR gaCCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAAC-CTCCAAAGGAAAAAG acattgtcaaggctcttaatgcctagaattatccctgtttttctctgcaggaCCCCAAGACTCATGGAAAGTCTCTCCTGCCTCCCAGGGAAACCCTTCAAAGGAAAAAAgtaagtgcacctttccctaaccattaacccatttcataattcagcccccc Alignment from Spaln_aa2Genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAAC-CTCCAAAGGAAAAAG acattgtcaaggctcttaatgcctagaattatccctgtttttctctgcagGACCCCAAGACTCATGGAAAGTCTCTCCTGCCTCCCAGGGAAACcCTTCAAAGGAAAAAAgtaagtgcacctttccctaaccattaacccatttcataattcagcccccc Alignment from Spaln_nt2Genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAACC-TCCAAAGGAAAAAG acattgtcaaggctcttaatgcctagaattatccctgtttttctctgcagGACCCCAAGACTCATGGAAAGTCTCTCCTGCCTCCCAGGGAAACCCTTCAAAGGAAAAAAgtaagtgcacctttccctaaccattaacccatttcataattcagcccccc Alignment from Pairagon GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAA-CCTCCAAAGGAAAAAG acattgtcaaggctcttaatgcctagaattatccctgtttttctctgcagGACCCCAAGACTCATGGAAAGTCTCTCCTGCCTCCCAGGGAAACCCTTCAAAGGAAAAAAgtaagtgcacctttccctaaccattaacccatttcataattcagcccccc Alignment from Exonerate_protein2genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAAC-CTCCAAAGGAAAAAG acattgtcaaggctcttaatgcctagaattatccctgtttttctctgcagGACCCCAAGACTCATGGAAAGTCTCTCCTGCCTCCCAGGGAAACCCTTCAAAGGAAAAAAgtaagtgcacctttccctaaccattaacccatttcataattcagcccccc Alignment from Exonerate_coding2genome GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAAC-CTCCAAAGGAAAAAG acattgtcaaggctcttaatgcctagaattatccctgtttttctctgcagGACCCCAAGACTCATGGAAAGTCTCTCCTGCCTCCCAGGGAAACCCTTCAAAGGAAAAAAgtaagtgcacctttccctaaccattaacccatttcataattcagcccccc Alignment from GeneWise GACCCCAGGACTCCTGGAAAGTTTCTCCAGCCTCCCAGGGAAAC-CTCCAAAGGAAAAAG acattgtcaaggctcttaatgcctagaattatccctgtttttctctgcagGACCCCAAGACTCATGGAAAGTCTCTCCTGCCTCCCAGGGAAACCCTTCAAAGGAAAAAAgtaagtgcacctttccctaaccattaacccatttcataattcagcccccc #### Sec31b_ID9047_5 --> 0 - 0 Original Alignment AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTC-CAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG gattggtgggacaatatggtcagtgttcctctcattaatgttggttctagAACCCCCCGGAGGATATCAAGGTGTTGTCTTGGAACCTCCAAGTCCCAGCACATCCTTGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATAAAGGTCAGTAGTCACAGTAGCAGGgtaggtaatgggtgagcaatgacagccattggctgtcaaagtgacagaca Alignment from CESAR AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTC-CAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG gattggtgggacaatatggtcagtgttcctctcattaatgttggttctagAACCCCCCGGAGGATATCAAGGTGTTGTCTTGGAACCTCCAAGTCCCAGCACATCCTTGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATAAAGGTCAGTAGTCACAGTAGCAGGgtaggtaatgggtgagcaatgacagccattggctgtcaaagtgacagaca Alignment from Spaln_aa2Genome AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTC-CAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG gattggtgggacaatatggtcagtgttcctctcattaatgttggttctagAACCCCCCGGAGGATATCAAGGTGTTGTCTTGGAACCTCCAAGTCcCAGCACATCCTTGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATAAAGGTCAGTAGTCACAGTAGCAGGgtaggtaatgggtgagcaatgacagccattggctgtcaaagtgacagaca Alignment from Spaln_nt2Genome AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGT-CCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG gattggtgggacaatatggtcagtgttcctctcattaatgttggttctagAACCCCCCGGAGGATATCAAGGTGTTGTCTTGGAACCTCCAAGTCCCAGCACATCCTTGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATAAAGGTCAGTAGTCACAGTAGCAGGgtaggtaatgggtgagcaatgacagccattggctgtcaaagtgacagaca Alignment from Pairagon AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGT-CCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG gattggtgggacaatatggtcagtgttcctctcattaatgttggttctagAACCCCCCGGAGGATATCAAGGTGTTGTCTTGGAACCTCCAAGTCCCAGCACATCCTTGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATAAAGGTCAGTAGTCACAGTAGCAGGgtaggtaatgggtgagcaatgacagccattggctgtcaaagtgacagaca Alignment from Exonerate_protein2genome AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTC-CAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG gattggtgggacaatatggtcagtgttcctctcattaatgttggttctagAACCCCCCGGAGGATATCAAGGTGTTGTCTTGGAACCTCCAAGTCCCAGCACATCCTTGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATAAAGGTCAGTAGTCACAGTAGCAGGgtaggtaatgggtgagcaatgacagccattggctgtcaaagtgacagaca Alignment from Exonerate_coding2genome AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTC-CAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG gattggtgggacaatatggtcagtgttcctctcattaatgttggttctagAACCCCCCGGAGGATATCAAGGTGTTGTCTTGGAACCTCCAAGTCCCAGCACATCCTTGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATAAAGGTCAGTAGTCACAGTAGCAGGgtaggtaatgggtgagcaatgacagccattggctgtcaaagtgacagaca Alignment from GeneWise AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAA-GTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCAGCAGCCACAGCAGCAGG gattggtgggacaatatggtcagtgttcctctcattaatgttggttctagAACCCCCCGGAGGATATCAAGGTGTTGTCTTGGAACCTCCAAGTCCCAGCACATCCTTGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATAAAGGTCAGTAGTCACAGTAGCAGGgtaggtaatgggtgagcaatgacagccattggctgtcaaagtgacagaca #### Sec31b_ID9048_4 --> 0 - 0 Original Alignment GGCAATCTCCTGGCCTCAGGAGCCAGTGACTCTGAGATCTTC-ATTTGGGATTTGAACCACCTGAGTGTCCCAATGACACCTGGACCCAAGTCACAG gctgtctgtgatatggggtgcatttctatgctttgttttgctgatttaagGGCAATCTCCTTGCCTCAGGAGCCAGTGACTCTGAGATCTTCCAATTGGGACTGGAATCACCTGAGTGTCTCGATGACACCAGGACCCAAGTCACAGgtaagaagctcactactgccctttacctagggtagccacttaggagaggg Alignment from CESAR GGCAATCTCCTGGCCTCAGGAGCCAGTGACTCTGAGATCTTC-ATTTGGGATTTGAACCACCTGAGTGTCCCAATGACACCTGGACCCAAGTCACAG gctgtctgtgatatggggtgcatttctatgctttgttttgctgatttaagGGCAATCTCCTTGCCTCAGGAGCCAGTGACTCTGAGATCTTCCAATTGGGACTGGAATCACCTGAGTGTCTCGATGACACCAGGACCCAAGTCACAGgtaagaagctcactactgccctttacctagggtagccacttaggagaggg Alignment from Spaln_aa2Genome GGCAATCTCCTGGCCTCAGGAGCCAGTGACTCTGAGATCTTC-ATTTGGGATTTGAACCACCTGAGTGTCCCAATGACACCTGGACCCAAGTCACAG gctgtctgtgatatggggtgcatttctatgctttgttttgctgatttaagGGCAATCTCCTTGCCTCAGGAGCCAGTGACTCTGAGATCTTCcAATTGGGACTGGAATCACCTGAGTGTCTCGATGACACCAGGACCCAAGTCACAGgtaagaagctcactactgccctttacctagggtagccacttaggagaggg Alignment from Spaln_nt2Genome GGCAATCTCCTGGCCTCAGGAGCCAGTGACTCTGAGATCTTC-ATTTGGGATTTGAACCACCTGAGTGTCCCAATGACACCTGGACCCAAGTCACAG gctgtctgtgatatggggtgcatttctatgctttgttttgctgatttaagGGCAATCTCCTTGCCTCAGGAGCCAGTGACTCTGAGATCTTCCAATTGGGACTGGAATCACCTGAGTGTCTCGATGACACCAGGACCCAAGTCACAGgtaagaagctcactactgccctttacctagggtagccacttaggagaggg Alignment from Pairagon GGCAATCTCCTGGCCTCAGGAGCCAGTGACTCTGAGATCTT-CATTTGGGATTTGAACCACCTGAGTGTCCCAATGACACCTGGACCCAAGTCACAG gctgtctgtgatatggggtgcatttctatgctttgttttgctgatttaagGGCAATCTCCTTGCCTCAGGAGCCAGTGACTCTGAGATCTTCCAATTGGGACTGGAATCACCTGAGTGTCTCGATGACACCAGGACCCAAGTCACAGgtaagaagctcactactgccctttacctagggtagccacttaggagaggg Alignment from Exonerate_protein2genome GGCAATCTCCTGGCCTCAGGAGCCAGTGACTCTGAGATCTTC-ATTTGGGATTTGAACCACCTGAGTGTCCCAATGACACCTGGACCCAAGTCACAG gctgtctgtgatatggggtgcatttctatgctttgttttgctgatttaagGGCAATCTCCTTGCCTCAGGAGCCAGTGACTCTGAGATCTTCCAATTGGGACTGGAATCACCTGAGTGTCTCGATGACACCAGGACCCAAGTCACAGgtaagaagctcactactgccctttacctagggtagccacttaggagaggg Alignment from Exonerate_coding2genome GGCAATCTCCTGGCCTCAGGAGCCAGTGACTCTGAGATCTTC-ATTTGGGATTTGAACCACCTGAGTGTCCCAATGACACCTGGACCCAAGTCACAG gctgtctgtgatatggggtgcatttctatgctttgttttgctgatttaagGGCAATCTCCTTGCCTCAGGAGCCAGTGACTCTGAGATCTTCCAATTGGGACTGGAATCACCTGAGTGTCTCGATGACACCAGGACCCAAGTCACAGgtaagaagctcactactgccctttacctagggtagccacttaggagaggg Alignment from GeneWise GGCAATCTCCTGGCCTCAGGAGCCAGTGACTCTGAGATCTTC-ATTTGGGATTTGAACCACCTGAGTGTCCCAATGACACCTGGACCCAAGTCACAG gctgtctgtgatatggggtgcatttctatgctttgttttgctgatttaagGGCAATCTCCTTGCCTCAGGAGCCAGTGACTCTGAGATCTTCCAATTGGGACTGGAATCACCTGAGTGTCTCGATGACACCAGGACCCAAGTCACAGgtaagaagctcactactgccctttacctagggtagccacttaggagaggg #### Sema4g_ID9244_2 --> 2 - 0 Original Alignment agCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCT-CGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gggcataataaagtatttcccagctggctggccacctgctttgtctacagagGTATCACAGGTACAACACTTCAAGGGTCAGGCCCAAAATTATTCAACCCTGCTGTTGGAGGAGGCTTCTGAAAAGCTGCTAGTGGGGGCTCCGAGGTTCACTGTTCTCCCTCAGTGCACGTGAAATCAGAGAGAGGACACATAAAGAGgtaagtcactgatgtttggtcttacgggatctctagctatggcaccagga Alignment from CESAR agCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCT-CGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gggcataataaagtatttcccagctggctggccacctgctttgtctacagagGTATCACAGGTACAACACTTCAAGGGTCAGGCCCAAAATTATTCAACCCTGCTGTTGGAGGAGGCTTCTGAAAAGCTGCTAGTGGGGGCTCCGAGGTTCACTGTTCTCCCTCAGTGCACGTGAAATCAGAGAGAGGACACATAAAGAGgtaagtcactgatgtttggtcttacgggatctctagctatggcaccagga Alignment from Spaln_aa2Genome AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCT-CGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gggcataataaagtatttcccagctggctggccacctgctttgtctacagAGGTATCACAGGTACAACACTTCAAGGGTCAGGCCCAAAATTATTCAACCCTGCTGTTGGAGGAGGCTTCTGAAAAGCTGCTAGTGGGGGCTcCGAGGTTCACTGTTCTCCCTCAGTGCACGTGAAATCAGAGAGAGGACACATAAAGAGgtaagtcactgatgtttggtcttacgggatctctagctatggcaccagga Alignment from Spaln_nt2Genome AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTC-GAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gggcataataaagtatttcccagctggctggccacctgctttgtctacagAGGTATCACAGGTACAACACTTCAAGGGTCAGGCCCAAAATTATTCAACCCTGCTGTTGGAGGAGGCTTCTGAAAAGCTGCTAGTGGGGGCTCCGAGGTTCACTGTTCTCCCTCAGTGCACGTGAAATCAGAGAGAGGACACATAAAGAGgtaagtcactgatgtttggtcttacgggatctctagctatggcaccagga Alignment from Pairagon AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCT-CGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gggcataataaagtatttcccagctggctggccacctgctttgtctacagAGGTATCACAGGTACAACACTTCAAGGGTCAGGCCCAAAATTATTCAACCCTGCTGTTGGAGGAGGCTTCTGAAAAGCTGCTAGTGGGGGCTCCGAGGTTCACTGTTCTCCCTCAGTGCACGTGAAATCAGAGAGAGGACACATAAAGAGgtaagtcactgatgtttggtcttacgggatctctagctatggcaccagga Alignment from Exonerate_protein2genome AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCT-CGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gggcataataaagtatttcccagctggctggccacctgctttgtctacagAGGTATCACAGGTACAACACTTCAAGGGTCAGGCCCAAAATTATTCAACCCTGCTGTTGGAGGAGGCTTCTGAAAAGCTGCTAGTGGGGGCTCCGAGGTTCACTGTTCTCCCTCAGTGCACGTGAAATCAGAGAGAGGACACATAAAGAGgtaagtcactgatgtttggtcttacgggatctctagctatggcaccagga Alignment from Exonerate_coding2genome AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCT-CGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gggcataataaagtatttcccagctggctggccacctgctttgtctacagAGGTATCACAGGTACAACACTTCAAGGGTCAGGCCCAAAATTATTCAACCCTGCTGTTGGAGGAGGCTTCTGAAAAGCTGCTAGTGGGGGCTCCGAGGTTCACTGTTCTCCCTCAGTGCACGTGAAATCAGAGAGAGGACACATAAAGAGgtaagtcactgatgtttggtcttacgggatctctagctatggcaccagga Alignment from GeneWise AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGG-GCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gggcataataaagtatttcccagctggctggccacctgctttgtctacagAGGTATCACAGGTACAACACTTCAAGGGTCAGGCCCAAAATTATTCAACCCTGCTGTTGGAGGAGGCTTCTGAAAAGCTGCTAGTGGGGGCTCCGAGGTTCACTGTTCTCCCTCAGTGCACGTGAAATCAGAGAGAGGACACATAAAGAGgtaagtcactgatgtttggtcttacgggatctctagctatggcaccagga #### Sema4g_ID9247_5 --> 0 - 1 Original Alignment GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGG-GGCTTCACAGGCCTTATCATTg aagccttgttgcccctcatgtaccattaacattcctttcattcttctcagGATGCTGAAACCTTCATCTTGCCTACTAGTTTTGAAGAGGGAAAAGAGGAATGTCCTTATGACCCGGCCCGGCGGCTTCACAGGCCTTATCATTggtttgtatagtgtaaccaggcccccagccccacaattctgtgacctgaat Alignment from CESAR GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGG-GGCTTCACAGGCCTTATCATTg aagccttgttgcccctcatgtaccattaacattcctttcattcttctcagGATGCTGAAACCTTCATCTTGCCTACTAGTTTTGAAGAGGGAAAAGAGGAATGTCCTTATGACCCGGCCCGGCGGCTTCACAGGCCTTATCATTggtttgtatagtgtaaccaggcccccagccccacaattctgtgacctgaat Alignment from Spaln_aa2Genome GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGG-GGCTTCACAGGCCTTATCATTG aagccttgttgcccctcatgtaccattaacattcctttcattcttctcagGATGCTGAAACCTTCATCTTGCCTACTAGTTTTGAAGAGGGAAAAGAGGAATGTCCTTATGACCCGGCCCGGcGGCTTCACAGGCCTTATCATTGgtttgtatagtgtaaccaggcccccagccccacaattctgtgacctgaat Alignment from Spaln_nt2Genome GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGG-GGCTTCACAGGCCTTATCATTG aagccttgttgcccctcatgtaccattaacattcctttcattcttctcagGATGCTGAAACCTTCATCTTGCCTACTAGTTTTGAAGAGGGAAAAGAGGAATGTCCTTATGACCCGGCCCGGCGGCTTCACAGGCCTTATCATTGgtttgtatagtgtaaccaggcccccagccccacaattctgtgacctgaat Alignment from Pairagon GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGG-GGCTTCACAGGCCTTATCATTG aagccttgttgcccctcatgtaccattaacattcctttcattcttctcagGATGCTGAAACCTTCATCTTGCCTACTAGTTTTGAAGAGGGAAAAGAGGAATGTCCTTATGACCCGGCCCGGCGGCTTCACAGGCCTTATCATTGgtttgtatagtgtaaccaggcccccagccccacaattctgtgacctgaat Alignment from Exonerate_protein2genome GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGG-GGCTTCACAGGCCTTATCATTG aagccttgttgcccctcatgtaccattaacattcctttcattcttctcagGATGCTGAAACCTTCATCTTGCCTACTAGTTTTGAAGAGGGAAAAGAGGAATGTCCTTATGACCCGGCCCGGCGGCTTCACAGGCCTTATCATTGgtttgtatagtgtaaccaggcccccagccccacaattctgtgacctgaat Alignment from Exonerate_coding2genome GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGG-GGCTTCACAGGCCTTATCATTG aagccttgttgcccctcatgtaccattaacattcctttcattcttctcagGATGCTGAAACCTTCATCTTGCCTACTAGTTTTGAAGAGGGAAAAGAGGAATGTCCTTATGACCCGGCCCGGCGGCTTCACAGGCCTTATCATTGgtttgtatagtgtaaccaggcccccagccccacaattctgtgacctgaat Alignment from GeneWise GATGCTGAAACCTTCATCTTGCCTACTAGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCC-CGGGGCTTCACAGGCCTTATCATTG aagccttgttgcccctcatgtaccattaacattcctttcattcttctcagGATGCTGAAACCTTCATCTTGCCTACTAGTTTTGAAGAGGGAAAAGAGGAATGTCCTTATGACCCGGCCCGGCGGCTTCACAGGCCTTATCATTGgtttgtatagtgtaaccaggcccccagccccacaattctgtgacctgaat #### Sema4g_ID9250_8 --> 0 - 2 Original Alignment GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCAC-ATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGtg taatgcaaaggccagacctctgaactgatttgtgactttttgttttctagGGAGATCTGGGTGGGGAAAAGATCCTACAGAAGAAGTGGGAATCCTTCCTGAAGGCTCGACTCATCTGCCATCGTTCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTGAATGCCGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTGACAACCCAGtggtgagttaggagaatgggcacagatgttgggcaaaggcaagggaacagat Alignment from CESAR GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCAC-ATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGtg taatgcaaaggccagacctctgaactgatttgtgactttttgttttctagGGAGATCTGGGTGGGGAAAAGATCCTACAGAAGAAGTGGGAATCCTTCCTGAAGGCTCGACTCATCTGCCATCGTTCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTGAATGCCGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTGACAACCCAGtggtgagttaggagaatgggcacagatgttgggcaaaggcaagggaacagat Alignment from Spaln_aa2Genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCAC-ATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG taatgcaaaggccagacctctgaactgatttgtgactttttgttttctagGGAGATCTGGGTGGGGAAAAGATCCTACAGAAGAAGTGGGAATCCTTCCTGAAGGCTCGACTCATCTGCCATcGTTCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTGAATGCCGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTGACAACCCAGTGgtgagttaggagaatgggcacagatgttgggcaaaggcaagggaacagat Alignment from Spaln_nt2Genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCA-CATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG taatgcaaaggccagacctctgaactgatttgtgactttttgttttctagGGAGATCTGGGTGGGGAAAAGATCCTACAGAAGAAGTGGGAATCCTTCCTGAAGGCTCGACTCATCTGCCATCGTTCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTGAATGCCGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTGACAACCCAGTGgtgagttaggagaatgggcacagatgttgggcaaaggcaagggaacagat Alignment from Pairagon GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCA-CATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG taatgcaaaggccagacctctgaactgatttgtgactttttgttttctagGGAGATCTGGGTGGGGAAAAGATCCTACAGAAGAAGTGGGAATCCTTCCTGAAGGCTCGACTCATCTGCCATCGTTCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTGAATGCCGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTGACAACCCAGTGgtgagttaggagaatgggcacagatgttgggcaaaggcaagggaacagat Alignment from Exonerate_protein2genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCAC-ATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG taatgcaaaggccagacctctgaactgatttgtgactttttgttttctagGGAGATCTGGGTGGGGAAAAGATCCTACAGAAGAAGTGGGAATCCTTCCTGAAGGCTCGACTCATCTGCCATCGTTCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTGAATGCCGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTGACAACCCAGTGgtgagttaggagaatgggcacagatgttgggcaaaggcaagggaacagat Alignment from Exonerate_coding2genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCAC-ATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG taatgcaaaggccagacctctgaactgatttgtgactttttgttttctagGGAGATCTGGGTGGGGAAAAGATCCTACAGAAGAAGTGGGAATCCTTCCTGAAGGCTCGACTCATCTGCCATCGTTCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTGAATGCCGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTGACAACCCAGTGgtgagttaggagaatgggcacagatgttgggcaaaggcaagggaacagat Alignment from GeneWise GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCAC-ATCCCACAGTATGAGACACTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG taatgcaaaggccagacctctgaactgatttgtgactttttgttttctagGGAGATCTGGGTGGGGAAAAGATCCTACAGAAGAAGTGGGAATCCTTCCTGAAGGCTCGACTCATCTGCCATCGTTCCACAGTATGAGACACTACGTGGAGTCTGCAGTCTGAATGCCGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTGACAACCCAGTGgtgagttaggagaatgggcacagatgttgggcaaaggcaagggaacagat #### Sema4g_ID9253_11 --> 2 - 0 Original Alignment ctGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATG-CACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccataaggcctccagttagaaagtccatctctcctctccccctcagcaGATGGCTGGATCCACAAAGCTGTAGTCCAGGGCTCTGGAATGCCACATCATTGAAGAGATACAAGTGCTTAGGGAGCCCCAGTCAGTGGACAATCTAGTTATCTCACCAATGCAGgtacggtagtgtcactatgctaggagtcaccaatataggttatcttacca Alignment from CESAR ctGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATG-CACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccataaggcctccagttagaaagtccatctctcctctccccctcagcaGATGGCTGGATCCACAAAGCTGTAGTCCAGGGCTCTGGAATGCCACATCATTGAAGAGATACAAGTGCTTAGGGAGCCCCAGTCAGTGGACAATCTAGTTATCTCACCAATGCAGgtacggtagtgtcactatgctaggagtcaccaatataggttatcttacca Alignment from Spaln_aa2Genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATG-CACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccataaggcctccagttagaaagtccatctctcctctccccctcagCAGATGGCTGGATCCACAAAGCTGTAGTCCAGGGCTCTGGAATGcCACATCATTGAAGAGATACAAGTGCTTAGGGAGCCCCAGTCAGTGGACAATCTAGTTATCTCACCAATGCAGgtacggtagtgtcactatgctaggagtcaccaatataggttatcttacca Alignment from Spaln_nt2Genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGC-ACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccataaggcctccagttagaaagtccatctctcctctccccctcagCAGATGGCTGGATCCACAAAGCTGTAGTCCAGGGCTCTGGAATGCCACATCATTGAAGAGATACAAGTGCTTAGGGAGCCCCAGTCAGTGGACAATCTAGTTATCTCACCAATGCAGgtacggtagtgtcactatgctaggagtcaccaatataggttatcttacca Alignment from Pairagon CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATG-CACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccataaggcctccagttagaaagtccatctctcctctccccctcagCAGATGGCTGGATCCACAAAGCTGTAGTCCAGGGCTCTGGAATGCCACATCATTGAAGAGATACAAGTGCTTAGGGAGCCCCAGTCAGTGGACAATCTAGTTATCTCACCAATGCAGgtacggtagtgtcactatgctaggagtcaccaatataggttatcttacca Alignment from Exonerate_protein2genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATG-CACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccataaggcctccagttagaaagtccatctctcctctccccctcagCAGATGGCTGGATCCACAAAGCTGTAGTCCAGGGCTCTGGAATGCCACATCATTGAAGAGATACAAGTGCTTAGGGAGCCCCAGTCAGTGGACAATCTAGTTATCTCACCAATGCAGgtacggtagtgtcactatgctaggagtcaccaatataggttatcttacca Alignment from Exonerate_coding2genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATG-CACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccataaggcctccagttagaaagtccatctctcctctccccctcagCAGATGGCTGGATCCACAAAGCTGTAGTCCAGGGCTCTGGAATGCCACATCATTGAAGAGATACAAGTGCTTAGGGAGCCCCAGTCAGTGGACAATCTAGTTATCTCACCAATGCAGgtacggtagtgtcactatgctaggagtcaccaatataggttatcttacca Alignment from GeneWise CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGG-ATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccataaggcctccagttagaaagtccatctctcctctccccctcagCAGATGGCTGGATCCACAAAGCTGTAGTCCAGGGCTCTGGAATGCCACATCATTGAAGAGATACAAGTGCTTAGGGAGCCCCAGTCAGTGGACAATCTAGTTATCTCACCAATGCAGgtacggtagtgtcactatgctaggagtcaccaatataggttatcttacca #### Sema4g_ID9254_12 --> 0 - 2 Original Alignment CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCA-CGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACag ggggtggctgcgagagacatgacttgtctcctgttatttccactgtttagCATAGCCTATATGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTGTCCAGCTGCTCACCGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACTGTAGCCAACaggtgcgtgggtgctggatgagagacagggtagataggtgcctgtggaggag Alignment from CESAR CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCA-CGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACag ggggtggctgcgagagacatgacttgtctcctgttatttccactgtttagCATAGCCTATATGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTGTCCAGCTGCTCACCGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACTGTAGCCAACaggtgcgtgggtgctggatgagagacagggtagataggtgcctgtggaggag Alignment from Spaln_aa2Genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCA-CGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG ggggtggctgcgagagacatgacttgtctcctgttatttccactgtttagCATAGCCTATATGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTGTCCAGCTGCTCAcCGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACTGTAGCCAACAGgtgcgtgggtgctggatgagagacagggtagataggtgcctgtggaggag Alignment from Spaln_nt2Genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCA-CGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG ggggtggctgcgagagacatgacttgtctcctgttatttccactgtttagCATAGCCTATATGTGGGGGCTGCTAGTGGA---ATTCAGTTTCCTCTGTCCAGCTGCTCACCGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACTGTAGCCAACAGgtgcgtgggtgctggatgagagacagggtagataggtgcctgtggaggag Alignment from Pairagon CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCA-CGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG ggggtggctgcgagagacatgacttgtctcctgttatttccactgtttagCATAGCCTATATGTGGGGGCTGCTAGTGGAA---TTCAGTTTCCTCTGTCCAGCTGCTCACCGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACTGTAGCCAACAGgtgcgtgggtgctggatgagagacagggtagataggtgcctgtggaggag Alignment from Exonerate_protein2genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCA-CGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG ggggtggctgcgagagacatgacttgtctcctgttatttccactgtttagCATAGCCTATATGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTGTCCAGCTGCTCACCGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACTGTAGCCAACAGgtgcgtgggtgctggatgagagacagggtagataggtgcctgtggaggag Alignment from Exonerate_coding2genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCA-CGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG ggggtggctgcgagagacatgacttgtctcctgttatttccactgtttagCATAGCCTATATGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTGTCCAGCTGCTCACCGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACTGTAGCCAACAGgtgcgtgggtgctggatgagagacagggtagataggtgcctgtggaggag Alignment from GeneWise CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGC-TCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG ggggtggctgcgagagacatgacttgtctcctgttatttccactgtttagCATAGCCTATATGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTGTCCAGCTGCTCACCGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACTGTAGCCAACAGgtgcgtgggtgctggatgagagacagggtagataggtgcctgtggaggag #### Sf1_ID1664_5 --> 1 - 2 Original Alignment gCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCA-GAAATCAATTTTGTGGGGCTCCTAATTGGACCCag aatgcatgagaccttccaaagatagatgtgtctttttaaatattgtttagaCCTCCAGCAACACGTGTGAGTGATAAAGTGATGATACCACAATACGAATATCCACGAAATCAATTTTGTGGGCCTTCTAATTGGACCCaggtgagtaattagtggtctatggcaccctgggtatccattgtagttgaagc Alignment from CESAR gCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCA-GAAATCAATTTTGTGGGGCTCCTAATTGGACCCag aatgcatgagaccttccaaagatagatgtgtctttttaaatattgtttagaCCTCCAGCAACACGTGTGAGTGATAAAGTGATGATACCACAATACGAATATCCACGAAATCAATTTTGTGGGCCTTCTAATTGGACCCaggtgagtaattagtggtctatggcaccctgggtatccattgtagttgaagc Alignment from Spaln_aa2Genome GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCA-GAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG aatgcatgagaccttccaaagatagatgtgtctttttaaatattgtttagACCTCCAGCAACACGTGTGAGTGATAAAGTGATGATACCACAATACGAATATCCAcGAAATCAATTTTGTGGGCCTTCTAATTGGACCCAGgtgagtaattagtggtctatggcaccctgggtatccattgtagttgaagc Alignment from Spaln_nt2Genome GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCA-GAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG aatgcatgagaccttccaaagatagatgtgtctttttaaatattgtttagACCTCCAGCAACACGTGTGAGTGATAAAGTGATGATACCACAATACGAATATCCACGAAATCAATTTTGTGGGCCTTCTAATTGGACCCAGgtgagtaattagtggtctatggcaccctgggtatccattgtagttgaagc Alignment from Pairagon GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCA-GAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG aatgcatgagaccttccaaagatagatgtgtctttttaaatattgtttagACCTCCAGCAACACGTGTGAGTGATAAAGTGATGATACCACAATACGAATATCCACGAAATCAATTTTGTGGGCCTTCTAATTGGACCCAGgtgagtaattagtggtctatggcaccctgggtatccattgtagttgaagc Alignment from Exonerate_protein2genome GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCA-GAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG aatgcatgagaccttccaaagatagatgtgtctttttaaatattgtttagACCTCCAGCAACACGTGTGAGTGATAAAGTGATGATACCACAATACGAATATCCACGAAATCAATTTTGTGGGCCTTCTAATTGGACCCAGgtgagtaattagtggtctatggcaccctgggtatccattgtagttgaagc Alignment from Exonerate_coding2genome GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCA-GAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG aatgcatgagaccttccaaagatagatgtgtctttttaaatattgtttagACCTCCAGCAACACGTGTGAGTGATAAAGTGATGATACCACAATACGAATATCCACGAAATCAATTTTGTGGGCCTTCTAATTGGACCCAGgtgagtaattagtggtctatggcaccctgggtatccattgtagttgaagc Alignment from GeneWise GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAAGACGAATATCCA-GAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG aatgcatgagaccttccaaagatagatgtgtctttttaaatattgtttagACCTCCAGCAACACGTGTGAGTGATAAAGTGATGATACCACAATACGAATATCCACGAAATCAATTTTGTGGGCCTTCTAATTGGACCCAGgtgagtaattagtggtctatggcaccctgggtatccattgtagttgaagc #### Sf1_ID1667_8 --> 1 - 2 Original Alignment gATCTTAAGGCCCTGGCAGAGCTCAGAGACGCGCAGCATTACCAATACTACTGTGTGTACCAAGTGTGGAGGG-GCTGGTCACATTGCTTCTGATTGCAAATTTCAGag gttttattgaagggggatggggtctctggaactttgtccttgccttctagaATCTTAAGGCCCTGGCAGAGCTCAGAGACACGAAGTATTACCAATACTACTGTGTGTACCAAATGTGGAGGGCGCTGGTCATATTGCCTCTGATTGCAAAGTTCAGaggtaggaccaacctagaaaagctgattgctgcacaggttcataagatggac Alignment from CESAR gATCTTAAGGCCCTGGCAGAGCTCAGAGACGCGCAGCATTACCAATACTACTGTGTGTACCAAGTGTGGAGGG-GCTGGTCACATTGCTTCTGATTGCAAATTTCAGag gttttattgaagggggatggggtctctggaactttgtccttgccttctagaATCTTAAGGCCCTGGCAGAGCTCAGAGACACGAAGTATTACCAATACTACTGTGTGTACCAAATGTGGAGGGCGCTGGTCATATTGCCTCTGATTGCAAAGTTCAGaggtaggaccaacctagaaaagctgattgctgcacaggttcataagatggac Alignment from Spaln_aa2Genome GATCTTAAGGCCCTGGCAGAGCTCAGAGACGCGCAGCATTACCAATACTACTGTGTGTACCAAGTGTGGAGGG-GCTGGTCACATTGCTTCTGATTGCAAATTTCAGAG gttttattgaagggggatggggtctctggaactttgtccttgccttctagAATCTTAAGGCCCTGGCAGAGCTCAGAGACACGAAGTATTACCAATACTACTGTGTGTACCAAATGTGGAGGGcGCTGGTCATATTGCCTCTGATTGCAAAGTTCAGAGgtaggaccaacctagaaaagctgattgctgcacaggttcataagatggac Alignment from Spaln_nt2Genome GATCTTAAGGCCCTGGCAGAGCTCAGAGACGCGCAGCATTACCAATACTACTGTGTGTACCAAGTGTGGAGGG-GCTGGTCACATTGCTTCTGATTGCAAATTTCAGAG gttttattgaagggggatggggtctctggaactttgtccttgccttctagAATCTTAAGGCCCTGGCAGAGCTCAGAGACACGAAGTATTACCAATACTACTGTGTGTACCAAATGTGGAGGGCGCTGGTCATATTGCCTCTGATTGCAAAGTTCAGAGgtaggaccaacctagaaaagctgattgctgcacaggttcataagatggac Alignment from Pairagon GATCTTAAGGCCCTGGCAGAGCTCAGAGACGCGCAGCATTACCAATACTACTGTGTGTACCAAGTGTGGAGGG-GCTGGTCACATTGCTTCTGATTGCAAATTTCAGAG gttttattgaagggggatggggtctctggaactttgtccttgccttctagAATCTTAAGGCCCTGGCAGAGCTCAGAGACACGAAGTATTACCAATACTACTGTGTGTACCAAATGTGGAGGGCGCTGGTCATATTGCCTCTGATTGCAAAGTTCAGAGgtaggaccaacctagaaaagctgattgctgcacaggttcataagatggac Alignment from Exonerate_protein2genome GATCTTAAGGCCCTGGCAGAGCTCAGAGACGCGCAGCATTACCAATACTACTGTGTGTACCAAGTGTGGA-GGGGCTGGTCACATTGCTTCTGATTGCAAATTTCAGAG gttttattgaagggggatggggtctctggaactttgtccttgccttctagAATCTTAAGGCCCTGGCAGAGCTCAGAGACACGAAGTATTACCAATACTACTGTGTGTACCAAATGTGGAGGGCGCTGGTCATATTGCCTCTGATTGCAAAGTTCAGAGgtaggaccaacctagaaaagctgattgctgcacaggttcataagatggac Alignment from Exonerate_coding2genome GATCTTAAGGCCCTGGCAGAGCTCAGAGACGCGCAGCATTACCAATACTACTGTGTGTACCAAGTGTGGA-GGGGCTGGTCACATTGCTTCTGATTGCAAATTTCAGAG gttttattgaagggggatggggtctctggaactttgtccttgccttctagAATCTTAAGGCCCTGGCAGAGCTCAGAGACACGAAGTATTACCAATACTACTGTGTGTACCAAATGTGGAGGGCGCTGGTCATATTGCCTCTGATTGCAAAGTTCAGAGgtaggaccaacctagaaaagctgattgctgcacaggttcataagatggac Alignment from GeneWise GATCTTAAGGCCCTGGCAGAGCTCAGAGACGCGCAGCATTACCAATACTACTGTGTGTACCAAGTGTGGAGGG-GCTGGTCACATTGCTTCTGATTGCAAATTTCAGAG gttttattgaagggggatggggtctctggaactttgtccttgccttctagAATCTTAAGGCCCTGGCAGAGCTCAGAGACACGAAGTATTACCAATACTACTGTGTGTACCAAATGTGGAGGGCGCTGGTCATATTGCCTCTGATTGCAAAGTTCAGAGgtaggaccaacctagaaaagctgattgctgcacaggttcataagatggac #### Sf1_ID1670_11 --> 2 - 1 Original Alignment atCAGTACCTGGGAAGTACG-CCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAg aggccagttcaaatgtcctactaatttcattccactgccctgtgtcacagatCAGTATCTGGGAAGTACACCCAGTGGCCTCTGGGGTCTATCGCCTGCATCAAGGAAAAggtgagaccattactttcttgggaggtctctctgggctgggctcaaatggt Alignment from CESAR atCAGTACCTGGGAAGTACG-CCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAg aggccagttcaaatgtcctactaatttcattccactgccctgtgtcacagatCAGTATCTGGGAAGTACACCCAGTGGCCTCTGGGGTCTATCGCCTGCATCAAGGAAAAggtgagaccattactttcttgggaggtctctctgggctgggctcaaatggt Alignment from Spaln_aa2Genome ATCAGTACCTGGGAAGTACG-CCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG aggccagttcaaatgtcctactaatttcattccactgccctgtgtcacagATCAGTATCTGGGAAGTACAcCCAGTGGCCTCTGGGGTCTATCGCCTGCATCAAGGAAAAGgtgagaccattactttcttgggaggtctctctgggctgggctcaaatggt Alignment from Spaln_nt2Genome ATCAGTACCTGGGAAGTACGCCT-GTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG aggccagttcaaatgtcctactaatttcattccactgccctgtgtcacagATCAGTATCTGGGAAGTACACCCAGTGGCCTCTGGGGTCTATCGCCTGCATCAAGGAAAAGgtgagaccattactttcttgggaggtctctctgggctgggctcaaatggt Alignment from Pairagon ATCAGTACCTGGGAAGTACGCCT-GTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG aggccagttcaaatgtcctactaatttcattccactgccctgtgtcacagATCAGTATCTGGGAAGTACACCCAGTGGCCTCTGGGGTCTATCGCCTGCATCAAGGAAAAGgtgagaccattactttcttgggaggtctctctgggctgggctcaaatggt Alignment from Exonerate_protein2genome ATCAGTACCTGGGAAGTACG-CCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG aggccagttcaaatgtcctactaatttcattccactgccctgtgtcacagATCAGTATCTGGGAAGTACACCCAGTGGCCTCTGGGGTCTATCGCCTGCATCAAGGAAAAGgtgagaccattactttcttgggaggtctctctgggctgggctcaaatggt Alignment from Exonerate_coding2genome ATCAGTACCTGGGAAGTACG-CCTGTGGGCTCTGGGGTCTATCGCCTGCATCAAGGAAAAG aggccagttcaaatgtcctactaatttcattccactgccctgtgtcacagATCAGTATCTGGGAAGTACACCCAGTGGCCTCTGGGGTCTATCGCCTGCATCAAGGAAAAGgtgagaccattactttcttgggaggtctctctgggctgggctcaaatggt Alignment from GeneWise ATCAGTACCTGGGAAGTACGCCTGTGGGC-TCTGGGGTCTATCGCCTGCATCAAGGAAAAG aggccagttcaaatgtcctactaatttcattccactgccctgtgtcacagATCAGTATCTGGGAAGTACACCCAGTGGCCTCTGGGGTCTATCGCCTGCATCAAGGAAAAGgtgagaccattactttcttgggaggtctctctgggctgggctcaaatggt #### Sf3b2_ID898_20 --> 0 - 0 Original Alignment GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGAC-TTCAGCGAC---ATGGTGGCTGAGCATGCTGCTAAGCAGAAG tgaggcccccatctctaggacctcagagctgtttcctgttcctctactagGTTATGAGCCAGAAGGGTGCTGCCCCTGAGTTACAAGGTGTGGAAGTAGCATTGGCGCCTGAGGAATTGGACTTGGATCCTATGGCTACAATGCAGAAGTATGAGGAGCATGTTCGGGAAAAACAGGCACAAGTGGAGAAGGGAGACCTTCAGTGATATGATGGTGGCTGAGCATGCTGCAAAGCATAAAgtaggtgtgattggtatatttagcatgagggctattctctctggtgggaa Alignment from CESAR GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGAC-TTCAGCGAC---ATGGTGGCTGAGCATGCTGCTAAGCAGAAG tgaggcccccatctctaggacctcagagctgtttcctgttcctctactagGTTATGAGCCAGAAGGGTGCTGCCCCTGAGTTACAAGGTGTGGAAGTAGCATTGGCGCCTGAGGAATTGGACTTGGATCCTATGGCTACAATGCAGAAGTATGAGGAGCATGTTCGGGAAAAACAGGCACAAGTGGAGAAGGGAGACCTTCAGTGATATGATGGTGGCTGAGCATGCTGCAAAGCATAAAgtaggtgtgattggtatatttagcatgagggctattctctctggtgggaa Alignment from Spaln_aa2Genome GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGAC-TTCAGCGAC---ATGGTGGCTGAGCATGCTGCTAAGCAGAAG tgaggcccccatctctaggacctcagagctgtttcctgttcctctactagGTTATGAGCCAGAAGGGTGCTGCCCCTGAGTTACAAGGTGTGGAAGTAGCATTGGCGCCTGAGGAATTGGACTTGGATCCTATGGCTACAATGCAGAAGTATGAGGAGCATGTTCGGGAAAAACAGGCACAAGTGGAGAAGGGAGACcTTCAGTGATATGATGGTGGCTGAGCATGCTGCAAAGCATAAAgtaggtgtgattggtatatttagcatgagggctattctctctggtgggaa Alignment from Spaln_nt2Genome GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGAC-TTCAGCGACATG---GTGGCTGAGCATGCTGCTAAGCAGAAG tgaggcccccatctctaggacctcagagctgtttcctgttcctctactagGTTATGAGCCAGAAGGGTGCTGCCCCTGAGTTACAAGGTGTGGAAGTAGCATTGGCGCCTGAGGAATTGGACTTGGATCCTATGGCTACAATGCAGAAGTATGAGGAGCATGTTCGGGAAAAACAGGCACAAGTGGAGAAGGGAGACCTTCAGTGATATGATGGTGGCTGAGCATGCTGCAAAGCATAAAgtaggtgtgattggtatatttagcatgagggctattctctctggtgggaa Alignment from Pairagon GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGA-CTTCAGCGAC---ATGGTGGCTGAGCATGCTGCTAAGCAGAAG tgaggcccccatctctaggacctcagagctgtttcctgttcctctactagGTTATGAGCCAGAAGGGTGCTGCCCCTGAGTTACAAGGTGTGGAAGTAGCATTGGCGCCTGAGGAATTGGACTTGGATCCTATGGCTACAATGCAGAAGTATGAGGAGCATGTTCGGGAAAAACAGGCACAAGTGGAGAAGGGAGACCTTCAGTGATATGATGGTGGCTGAGCATGCTGCAAAGCATAAAgtaggtgtgattggtatatttagcatgagggctattctctctggtgggaa Alignment from Exonerate_protein2genome GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAG-GAAGACTTCAGCGAC---ATGGTGGCTGAGCATGCTGCTAAGCAGAAG tgaggcccccatctctaggacctcagagctgtttcctgttcctctactagGTTATGAGCCAGAAGGGTGCTGCCCCTGAGTTACAAGGTGTGGAAGTAGCATTGGCGCCTGAGGAATTGGACTTGGATCCTATGGCTACAATGCAGAAGTATGAGGAGCATGTTCGGGAAAAACAGGCACAAGTGGAGAAGGGAGACCTTCAGTGATATGATGGTGGCTGAGCATGCTGCAAAGCATAAAgtaggtgtgattggtatatttagcatgagggctattctctctggtgggaa Alignment from Exonerate_coding2genome GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAG-GAAGACTTCAGCGAC---ATGGTGGCTGAGCATGCTGCTAAGCAGAAG tgaggcccccatctctaggacctcagagctgtttcctgttcctctactagGTTATGAGCCAGAAGGGTGCTGCCCCTGAGTTACAAGGTGTGGAAGTAGCATTGGCGCCTGAGGAATTGGACTTGGATCCTATGGCTACAATGCAGAAGTATGAGGAGCATGTTCGGGAAAAACAGGCACAAGTGGAGAAGGGAGACCTTCAGTGATATGATGGTGGCTGAGCATGCTGCAAAGCATAAAgtaggtgtgattggtatatttagcatgagggctattctctctggtgggaa Alignment from GeneWise GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAG-AAGGAAGACTTCAGCGAC---ATGGTGGCTGAGCATGCTGCTAAGCAGAAG tgaggcccccatctctaggacctcagagctgtttcctgttcctctactagGTTATGAGCCAGAAGGGTGCTGCCCCTGAGTTACAAGGTGTGGAAGTAGCATTGGCGCCTGAGGAATTGGACTTGGATCCTATGGCTACAATGCAGAAGTATGAGGAGCATGTTCGGGAAAAACAGGCACAAGTGGAGAAGGGAGACCTTCAGTGATATGATGGTGGCTGAGCATGCTGCAAAGCATAAAgtaggtgtgattggtatatttagcatgagggctattctctctggtgggaa #### Sf3b2_ID901_17 --> 0 - 2 Original Alignment ACCAAAACGGAAGAAGAAGAA-ATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACag gccagattcagtaactccctgttgtgaaattctctctgtgttttgcaaagACCAAAACGGAAGAGGAGGAACATCGACCAAACCCCGTGGGGGGAGCTGGAACCTTCTGACGAAGAATCCTCAGAGGAGGAGGAAGAGGAGGAGAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACaggtaagaacagaggctgttcccctagagttgcttgcctgccattgctattg Alignment from CESAR ACCAAAACGGAAGAAGAAGAA-ATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACag gccagattcagtaactccctgttgtgaaattctctctgtgttttgcaaagACCAAAACGGAAGAGGAGGAACATCGACCAAACCCCGTGGGGGGAGCTGGAACCTTCTGACGAAGAATCCTCAGAGGAGGAGGAAGAGGAGGAGAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACaggtaagaacagaggctgttcccctagagttgcttgcctgccattgctattg Alignment from Spaln_aa2Genome ACCAAAACGGAAGAAGAAGAA-ATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagattcagtaactccctgttgtgaaattctctctgtgttttgcaaagACCAAAACGGAAGAGGAGGAAcATCGACCAAACCCCGTGGGGGGAGCTGGAACCTTCTGACGAAGAATCCTCAGAGGAGGAGGAAGAGGAGGAGAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtaagaacagaggctgttcccctagagttgcttgcctgccattgctattg Alignment from Spaln_nt2Genome ACCAAAACGGAAGAAGAAGAA-ATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagattcagtaactccctgttgtgaaattctctctgtgttttgcaaagACCAAAACGGAAGAGGAGGAACATCGACCAAACCCCGTGGGGGGAGCTGGAACCTTCTGACGAAGAATCCTCAGAGGAGGAGGAAGAGGAGGAGAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtaagaacagaggctgttcccctagagttgcttgcctgccattgctattg Alignment from Pairagon ACCAAAACGGAAGAAGAAGAA-ATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagattcagtaactccctgttgtgaaattctctctgtgttttgcaaagACCAAAACGGAAGAGGAGGAACATCGACCAAACCCCGTGGGGGGAGCTGGAACCTTCTGACGAAGAATCCTCAGAGGAGGAGGAAGAGGAGGAGAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtaagaacagaggctgttcccctagagttgcttgcctgccattgctattg Alignment from Exonerate_protein2genome ACCAAAACGGAAGAAGAAGAA-ATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagattcagtaactccctgttgtgaaattctctctgtgttttgcaaagACCAAAACGGAAGAGGAGGAACATCGACCAAACCCCGTGGGGGGAGCTGGAACCTTCTGACGAAGAATCCTCAGAGGAGGAGGAAGAGGAGGAGAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtaagaacagaggctgttcccctagagttgcttgcctgccattgctattg Alignment from Exonerate_coding2genome ACCAAAACGGAAGAAGAAGAA-ATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagattcagtaactccctgttgtgaaattctctctgtgttttgcaaagACCAAAACGGAAGAGGAGGAACATCGACCAAACCCCGTGGGGGGAGCTGGAACCTTCTGACGAAGAATCCTCAGAGGAGGAGGAAGAGGAGGAGAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtaagaacagaggctgttcccctagagttgcttgcctgccattgctattg Alignment from GeneWise ACCAAAACGGAAGAAGAAGAA-ATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagattcagtaactccctgttgtgaaattctctctgtgttttgcaaagACCAAAACGGAAGAGGAGGAACATCGACCAAACCCCGTGGGGGGAGCTGGAACCTTCTGACGAAGAATCCTCAGAGGAGGAGGAAGAGGAGGAGAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtaagaacagaggctgttcccctagagttgcttgcctgccattgctattg #### Sf3b2_ID910_8 --> 2 - 0 Original Alignment agGAGGAGGAAATGGAGACAGATACTCGCTCATCT-CTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagcttttacagttaggagaggtcactcattttctctttctgcccagagAAGGAAGAAATGGAGACAGTCACTCGCTCATCTCCTAGGACCATCTGCATCAGAGACTGAGGAGGACACAGTGTCCATATCCAAAAAAGAGgtaaatgtttagtaggagtatgccacttttctgtgagcttcttggttgtc Alignment from CESAR agGAGGAGGAAATGGAGACAGATACTCGCTCATCT-CTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagcttttacagttaggagaggtcactcattttctctttctgcccagagAAGGAAGAAATGGAGACAGTCACTCGCTCATCTCCTAGGACCATCTGCATCAGAGACTGAGGAGGACACAGTGTCCATATCCAAAAAAGAGgtaaatgtttagtaggagtatgccacttttctgtgagcttcttggttgtc Alignment from Spaln_aa2Genome CAGGAGGAGGAGGAAATGGAGACAGATACTCGCTCATCT-CTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG aagcttttacagttaggagaggtcactcattttctctttctgccca gAGAAGGAAGAAATGGAGACAGTCACTCGCTCATCTcCTAGGACCATCTGCATCAGAGACTGAGGAGGACACAGTGTCCATATCCAAAAAAGAGgtaaatgtttagtaggagtatgccacttttctgtgagcttcttggttgtc Alignment from Spaln_nt2Genome AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTC-TGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagcttttacagttaggagaggtcactcattttctctttctgcccagAGAAGGAAGAAATGGAGACAGTCACTCGCTCATCTCCTAGGACCATCTGCATCAGAGACTGAGGAGGACACAGTGTCCATATCCAAAAAAGAGgtaaatgtttagtaggagtatgccacttttctgtgagcttcttggttgtc Alignment from Pairagon AGGAGGAGGAAATGGAGACAGATACTCGCTCATCT-CTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagcttttacagttaggagaggtcactcattttctctttctgcccagAGAAGGAAGAAATGGAGACAGTCACTCGCTCATCTCCTAGGACCATCTGCATCAGAGACTGAGGAGGACACAGTGTCCATATCCAAAAAAGAGgtaaatgtttagtaggagtatgccacttttctgtgagcttcttggttgtc Alignment from Exonerate_protein2genome AGGAGGAGGAAATGGAGACAGATACTCGCTCATCT-CTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagcttttacagttaggagaggtcactcattttctctttctgcccagAGAAGGAAGAAATGGAGACAGTCACTCGCTCATCTCCTAGGACCATCTGCATCAGAGACTGAGGAGGACACAGTGTCCATATCCAAAAAAGAGgtaaatgtttagtaggagtatgccacttttctgtgagcttcttggttgtc Alignment from Exonerate_coding2genome AGGAGGAGGAAATGGAGACAGATACTCGCTCATCT-CTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagcttttacagttaggagaggtcactcattttctctttctgcccagAGAAGGAAGAAATGGAGACAGTCACTCGCTCATCTCCTAGGACCATCTGCATCAGAGACTGAGGAGGACACAGTGTCCATATCCAAAAAAGAGgtaaatgtttagtaggagtatgccacttttctgtgagcttcttggttgtc Alignment from GeneWise GAGGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagcttttacagttaggagaggtcactcattttctctttctgcccagAGAAGGAAGAAATGGAGACAGTCACTCGCTCATCTCCTAGGACCATCTGCATCAGAGACTGAGGAGGACACAGTGTCCATATCCAAAAAAGAGgtaaatgtttagtaggagtatgccacttttctgtgagcttcttggttgtc #### Sf3b2_ID916_2 --> 2 - 0 Original Alignment ggAGTCGCGAGGAGTTAGTAGAGCGGCTG-CAGACCTACACCCGTCAG agcttgtctactcaggaaatgagcatagtctccccacctggaccccacagggAGTCGTGAGGAATTAGTAGAGAGGCTGCCAGACCTATACCCGTCAGgtaagtatttccagtgggctatgtctcaagatttctgaagtcacctaaga Alignment from CESAR ggAGTCGCGAGGAGTTAGTAGAGCGGCTG-CAGACCTACACCCGTCAG agcttgtctactcaggaaatgagcatagtctccccacctggaccccacagggAGTCGTGAGGAATTAGTAGAGAGGCTGCCAGACCTATACCCGTCAGgtaagtatttccagtgggctatgtctcaagatttctgaagtcacctaaga Alignment from Spaln_aa2Genome GGAGTCGCGAGGAGTTAGTAGAGCGGCTG-CAGACCTACACCCGTCAG agcttgtctactcaggaaatgagcatagtctccccacctggaccccacagGGAGTCGTGAGGAATTAGTAGAGAGGCTGcCAGACCTATACCCGTCAGgtaagtatttccagtgggctatgtctcaagatttctgaagtcacctaaga Alignment from Spaln_nt2Genome GGAGTCGCGAGGAGTTAGTAGAGCGGCTGC-AGACCTACACCCGTCAG agcttgtctactcaggaaatgagcatagtctccccacctggaccccacagGGAGTCGTGAGGAATTAGTAGAGAGGCTGCCAGACCTATACCCGTCAGgtaagtatttccagtgggctatgtctcaagatttctgaagtcacctaaga Alignment from Pairagon GGAGTCGCGAGGAGTTAGTAGAGCGGCTG-CAGACCTACACCCGTCAG agcttgtctactcaggaaatgagcatagtctccccacctggaccccacagGGAGTCGTGAGGAATTAGTAGAGAGGCTGCCAGACCTATACCCGTCAGgtaagtatttccagtgggctatgtctcaagatttctgaagtcacctaaga Alignment from Exonerate_protein2genome GGAGTCGCGAGGAGTTAGTAGAGCGGCTG-CAGACCTACACCCGTCAG agcttgtctactcaggaaatgagcatagtctccccacctggaccccacagGGAGTCGTGAGGAATTAGTAGAGAGGCTGCCAGACCTATACCCGTCAGgtaagtatttccagtgggctatgtctcaagatttctgaagtcacctaaga Alignment from Exonerate_coding2genome agcttgtctactcaggaaatgagcatagtctccccacctggaccccacagggagtcgtgaggaattagtagagaggctgccagacctatacccgtcaggtaagtatttccagtgggctatgtctcaagatttctgaagtcacctaaga Alignment from GeneWise TCGCGAGGAGTTAGTAGAGCGG-CTGCAGACCTACACCCGTCAG agcttgtctactcaggaaatgagcatagtctccccacctggaccccacagggagTCGTGAGGAATTAGTAGAGAGGCTGCCAGACCTATACCCGTCAGgtaagtatttccagtgggctatgtctcaagatttctgaagtcacctaaga #### Sfxn3_ID9286_4 --> 1 - 0 Original Alignment gCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGG-GCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaatttttgggcactacggacttcaattttcatcatttttttacaggCAGTTAGGGACAGCCTATGTGAGTGCCACCACTGGACGCTGTGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtaagttctccctccactataagcctttcctgaattctttaccccttgtc Alignment from CESAR gCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGG-GCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaatttttgggcactacggacttcaattttcatcatttttttacaggCAGTTAGGGACAGCCTATGTGAGTGCCACCACTGGACGCTGTGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtaagttctccctccactataagcctttcctgaattctttaccccttgtc Alignment from Spaln_aa2Genome GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGG-GCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaatttttgggcactacggacttcaattttcatcatttttttacagGCAGTTAGGGACAGCCTATGTGAGTGCCACCACTGGAcGCTGTGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtaagttctccctccactataagcctttcctgaattctttaccccttgtc Alignment from Spaln_nt2Genome GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGG-GCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaatttttgggcactacggacttcaattttcatcatttttttacagGCAGTTAGGGACAGCCTATGTGAGTGCCACCACTGGACGCTGTGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtaagttctccctccactataagcctttcctgaattctttaccccttgtc Alignment from Pairagon GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGG-GCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaatttttgggcactacggacttcaattttcatcatttttttacagGCAGTTAGGGACAGCCTATGTGAGTGCCACCACTGGACGCTGTGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtaagttctccctccactataagcctttcctgaattctttaccccttgtc Alignment from Exonerate_protein2genome GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGG-GCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaatttttgggcactacggacttcaattttcatcatttttttacagGCAGTTAGGGACAGCCTATGTGAGTGCCACCACTGGACGCTGTGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtaagttctccctccactataagcctttcctgaattctttaccccttgtc Alignment from Exonerate_coding2genome GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGG-GCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaatttttgggcactacggacttcaattttcatcatttttttacagGCAGTTAGGGACAGCCTATGTGAGTGCCACCACTGGACGCTGTGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtaagttctccctccactataagcctttcctgaattctttaccccttgtc Alignment from GeneWise GCAGTTGGGGACAGCCTATGTGAGTGCCACCACTGGG-GCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaatttttgggcactacggacttcaattttcatcatttttttacagGCAGTTAGGGACAGCCTATGTGAGTGCCACCACTGGACGCTGTGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtaagttctccctccactataagcctttcctgaattctttaccccttgtc #### Sfxn3_ID9291_9 --> 1 - 2 Original Alignment cTTGGTATTTGCCACACCCCTGTGCTGCGCT-CTGTTCCCTCAGAGAag actttatcctgatcagtgtcacagtcataatatgcacttttctttgttagcTTGGTATTTGCCACCCCCCTGTGTTGTGCCCTTGTTCCCTCAGAGAgcgtaatcgataccaatctaattgatttgcattgataagtagcgtgtttcca Alignment from CESAR cTTGGTATTTGCCACACCCCTGTGCTGCGCT-CTGTTCCCTCAGAGAag actttatcctgatcagtgtcacagtcataatatgcacttttctttgttagcTTGGTATTTGCCACCCCCCTGTGTTGTGCCCTTGTTCCCTCAGAGAgcgtaatcgataccaatctaattgatttgcattgataagtagcgtgtttcca Alignment from Spaln_aa2Genome CTTGGTATTTGCCACACCCCTGTGCTGCGCT-CTGTTCCCTCAGAGAAG actttatcctgatcagtgtcacagtcataatatgcacttttctttgttagCTTGGTATTTGCCACCCCCCTGTGTTGTGCCcTTGTTCCCTCAGAGAGCgtaatcgataccaatctaattgatttgcattgataagtagcgtgtttcca Alignment from Spaln_nt2Genome CTTGGTATTTGCCACACCCCTGTGCTGCGCTCT-GTTCCCTCAGAGAAG actttatcctgatcagtgtcacagtcataatatgcacttttctttgttagCTTGGTATTTGCCACCCCCCTGTGTTGTGCCCTTGTTCCCTCAGAGAGCgtaatcgataccaatctaattgatttgcattgataagtagcgtgtttcca Alignment from Pairagon CTTGGTATTTGCCACACCCCTGTGCTGCGCTC-TGTTCCCTCAGAGAAG actttatcctgatcagtgtcacagtcataatatgcacttttctttgttagCTTGGTATTTGCCACCCCCCTGTGTTGTGCCCTTGTTCCCTCAGAGAGCgtaatcgataccaatctaattgatttgcattgataagtagcgtgtttcca Alignment from Exonerate_protein2genome CTTGGTATTTGCCACACCCCTGTGCTGCGCT-CTGTTCCCTCAGAGAAG actttatcctgatcagtgtcacagtcataatatgcacttttctttgttagCTTGGTATTTGCCACCCCCCTGTGTTGTGCCCTTGTTCCCTCAGAGAGCgtaatcgataccaatctaattgatttgcattgataagtagcgtgtttcca Alignment from Exonerate_coding2genome CTTGGTATTTGCCACACCCCTGTGCTGCGCT-CTGTTCCCTCAGAGAAG actttatcctgatcagtgtcacagtcataatatgcacttttctttgttagCTTGGTATTTGCCACCCCCCTGTGTTGTGCCCTTGTTCCCTCAGAGAGCgtaatcgataccaatctaattgatttgcattgataagtagcgtgtttcca Alignment from GeneWise CTTGGTATTTGCCACACCCCTGTGCTGCGCTCTGTTCCCTCAGAGAAGC actttatcctgatcagtgtcacagtcataatatgcacttttctttgttagCTTGGTATTTGCCACCCCCCTGTGTTGTGCCCTTGTTCCCTCAGAGAGCgtaatcgataccaatctaattgatttgcattgataagtagcgtgtttcca #### Sipa1_ID1138_14 --> 1 - 0 Original Alignment gCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCC-ATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cctgatttcctgttgcatgtggcatcctctcatgctcaccctccctacaggCCA---CCTGGGAGCCTATCAGAAAAGATCTCTCATCTAGAGTCCCATGCTCTGGAAATTGCAAGAGGACTCGCAGAGGgtgacttgtctacctgggaagggtacacagggctgccatggacatgggac Alignment from CESAR gCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCC-ATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cctgatttcctgttgcatgtggcatcctctcatgctcaccctccctacaggCCA---CCTGGGAGCCTATCAGAAAAGATCTCTCATCTAGAGTCCCATGCTCTGGAAATTGCAAGAGGACTCGCAGAGGgtgacttgtctacctgggaagggtacacagggctgccatggacatgggac Alignment from Spaln_aa2Genome GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCC-ATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cctgatttcctgttgcatgtggcatcctctcatgctcaccctccctacagGCCA---CCTGGGAGCCTATCAGAAAAGATCTCTCATCTAGAGTCCcATGCTCTGGAAATTGCAAGAGGACTCGCAGAGGgtgacttgtctacctgggaagggtacacagggctgccatggacatgggac Alignment from Spaln_nt2Genome GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGT-CCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cctgatttcctgttgcatgtggcatcctctcatgctcaccctccctacagGCC---ACCTGGGAGCCTATCAGAAAAGATCTCTCATCTAGAGTCCCATGCTCTGGAAATTGCAAGAGGACTCGCAGAGGgtgacttgtctacctgggaagggtacacagggctgccatggacatgggac Alignment from Pairagon GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGT-CCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cctgatttcctgttgcatgtggcatcctctcatgctcaccctccctacagGCC---ACCTGGGAGCCTATCAGAAAAGATCTCTCATCTAGAGTCCCATGCTCTGGAAATTGCAAGAGGACTCGCAGAGGgtgacttgtctacctgggaagggtacacagggctgccatggacatgggac Alignment from Exonerate_protein2genome GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAGTCC-ATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cctgatttcctgttgcatgtggcatcctctcatgctcaccctccctacagGCCA---CCTGGGAGCCTATCAGAAAAGATCTCTCATCTAGAGTCCCATGCTCTGGAAATTGCAAGAGGACTCGCAGAGGgtgacttgtctacctgggaagggtacacagggctgccatggacatgggac Alignment from Exonerate_coding2genome cctgatttcctgttgcatgtggcatcctctcatgctcaccctccctacaggccacctgggagcctatcagaaaagatctctcatctagagtcccatgctctggaaattgcaagaggactcgcagagggtgacttgtctacctgggaagggtacacagggctgccatggacatgggac Alignment from GeneWise GCCAGAACCCGGGAGCCTGTCAGAAAAGGTCTCTCACCTAGAG-TCCATGCTCTGGAAGCTCCAGGAGGACCTGCAGAGG cctgatttcctgttgcatgtggcatcctctcatgctcaccctccctacagGCCA---CCTGGGAGCCTATCAGAAAAGATCTCTCATCTAGAGTCCCATGCTCTGGAAATTGCAAGAGGACTCGCAGAGGgtgacttgtctacctgggaagggtacacagggctgccatggacatgggac #### Sipa1_ID1140_12 --> 2 - 1 Original Alignment ttATGTCGGAAGCTGGCAGTGAGACCCTGGAGGAT-GAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGg ccctccctcctcccgatgcttcccttttaagcatgcttttgttttactagttATGCCAGAAGCTGGTACTGAGACCTTGGAT---CGAATGGCAGTCCATCTCAGAGATCACCTCCACTTGCAACACAATTTTGGAGTCACTGTCACGGGAAggtgagactgccagttggatgttagctccctcaaagaattctctgcctcat Alignment from CESAR ttATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGg ccctccctcctcccgatgcttcccttttaagcatgcttttgttttactagttATGCCAGAAGCTGGTACTGAGACCTTGGAT--CGAATGGCAGTCCATCTCAGAGATCACCTCCACTTGCAACACAATTTTGGAGTCACTGTCACGGGAAggtgagactgccagttggatgttagctccctcatgtttctgtttctgtctt Alignment from Spaln_aa2Genome ATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG ccctccctcctcccgatgcttcccttttaagcatgcttttgttttactagttatgccagaagctggtactgagaccttggatcgaatggcagtccatctcagagATCACCTCCACTTGCAACACAATTTTGGAGTCACTGTCACGGGAAGgtgagactgccagttggatgttagctccctcaaagaattctctgcctcat Alignment from Spaln_nt2Genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG ccctccctcctcccgatgcttcccttttaagcatgcttttgttttactagTTATGCCAGAAGCTGGTACTGAGACCTTGGA--TCGAATGGCAGTCCATCTCAGAGATCACCTCCACTTGCAACACAATTTTGGAGTCACTGTCACGGGAAGgtgagactgccagttggatgttagctccctcaaagaattctctgcctcat Alignment from Pairagon TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG ccctccctcctcccgatgcttcccttttaagcatgcttttgttttactagTTATGCCAGAAGCTGGTACTGAGACCTTGGA--TCGAATGGCAGTCCATCTCAGAGATCACCTCCACTTGCAACACAATTTTGGAGTCACTGTCACGGGAAGgtgagactgccagttggatgttagctccctcaaagaattctctgcctcat Alignment from Exonerate_protein2genome ATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG ccctccctcctcccgatgcttcccttttaagcatgcttttgttttactagttatgccagaagctggtactgagaccttggatcgaatggcagtccatctcagagATCACCTCCACTTGCAACACAATTTTGGAGTCACTGTCACGGGAAGgtgagactgccagttggatgttagctccctcaaagaattctctgcctcat Alignment from Exonerate_coding2genome ATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAGG ccctccctcctcccgatgcttcccttttaagcatgcttttgttttactagttatgccagaagctggtactgagaccttggatcgaatggcagtccatctcagagATCACCTCCACTTGCAACACAATTTTGGAGTCACTGTCACGGGAAGgtgagactgccagttggatgttagctccctcaaagaattctctgcctcat Alignment from GeneWise TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTGGAGTCACTGTCCCGGGAG--------------------------------------------------- ccctccctcctcccgatgcttcccttttaagcatgcttttgttttactagTTATGCCAGAAGCTGGTACTGAGACCTTGGATC--GAATGGCAGTCCATCTCAGAGATCACCTCCACTTGCAACACAATTTTGGAGTCACTGTCACGGGAAGGTGAGACTGCCAGTTGGATGTTAGCTCCCTCAAAGAATTCTCTGCCTCAT #### Sipa1_ID1142_10 --> 1 - 0 Original Alignment cTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCA-TCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG agggtctccaagccaaaggaagcaccacgcgattgatgtctttgtttcagcTCCCTGTCTGATGAGGTCCCCGTCCTACCCAAGACTACACCAGATCTCCTCCTTGTTACCACAGCCAACACTCTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtgggttgccaagttaacattggatgccatattattcactccctttcttg Alignment from CESAR cTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCA-TCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG agggtctccaagccaaaggaagcaccacgcgattgatgtctttgtttcagcTCCCTGTCTGATGAGGTCCCCGTCCTACCCAAGACTACACCAGATCTCCTCCTTGTTACCACAGCCAACACTCTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtgggttgccaagttaacattggatgccatattatcagtgcacgtttctt Alignment from Spaln_aa2Genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAAC-CCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG agggtctccaagccaaaggaagcaccacgcgattgatgtctttgtttcagCTCCCTGTCTGATGAGGTCCCCGTCCTACCCAAGACTACACCAGATCTCCTCCTTGTTACCACAGCCAACaCTCTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtgggttgccaagttaacattggatgccatattattcactccctttcttg Alignment from Spaln_nt2Genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCA-TCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG agggtctccaagccaaaggaagcaccacgcgattgatgtctttgtttcagCTCCCTGTCTGATGAGGTCCCCGTCCTACCCAAGACTACACCAGATCTCCTCCTTGTTACCACAGCCAACACTCTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtgggttgccaagttaacattggatgccatattattcactccctttcttg Alignment from Pairagon CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAAC-CCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG agggtctccaagccaaaggaagcaccacgcgattgatgtctttgtttcagCTCCCTGTCTGATGAGGTCCCCGTCCTACCCAAGACTACACCAGATCTCCTCCTTGTTACCACAGCCAACACTCTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtgggttgccaagttaacattggatgccatattattcactccctttcttg Alignment from Exonerate_protein2genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCA-TCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG agggtctccaagccaaaggaagcaccacgcgattgatgtctttgtttcagCTCCCTGTCTGATGAGGTCCCCGTCCTACCCAAGACTACACCAGATCTCCTCCTTGTTACCACAGCCAACACTCTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtgggttgccaagttaacattggatgccatattattcactccctttcttg Alignment from Exonerate_coding2genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCA-TCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG agggtctccaagccaaaggaagcaccacgcgattgatgtctttgtttcagCTCCCTGTCTGATGAGGTCCCCGTCCTACCCAAGACTACACCAGATCTCCTCCTTGTTACCACAGCCAACACTCTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtgggttgccaagttaacattggatgccatattattcactccctttcttg Alignment from GeneWise CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAAC-CCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCC----------------------------------------------------- agggtctccaagccaaaggaagcaccacgcgattgatgtctttgtttcagCTCCCTGTCTGATGAGGTCCCCGTCCTACCCAAGACTACACCAGATCTCCTCCTTGTTACCACAGCCAACACTCTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGGTGGGTTGCCAAGTTAACATTGGATGCCATATTATTCACTCCCTTTCTTG #### Sipa1_ID1145_7 --> 1 - 0 Original Alignment gGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCA-GGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gctggctcctccgacccctctttccctctctttgtttctcctttcttcaggGTGGCAGTGAGTCGAACCAAAGACACTCCTGCTTTCAGACCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGAGCCTTCCCATGGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTTGCTGGACTTGGCCTCACGGTTCGGCTTACCATCTCTAGGTGGTAGACGCCATTCAAACCCACGGAGTTCTCGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCAGGGGCACGGGTTGCAGCAGGGGCCGAAACAAGAGGTCCAGAGGATACTGAGGTGCCTTGCTTATTGGGCATCTCAGCTGAAACGCTAGTGCTGGTGGCACCTTGTGATGGTCATGTGGTCTTTAACTGTGCCTGCCGTGATGTATTGGCCTGGACCTTTTCTGAGCACCAACTTGACCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTTGTGGCACGTCTGCAGgtaaactacaatcacacagtgtgatccttgattttgtgtgcaacaggggc Alignment from CESAR gGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCA-GGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gctggctcctccgacccctctttccctctctttgtttctcctttcttcaggGTGGCAGTGAGTCGAACCAAAGACACTCCTGCTTTCAGACCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGAGCCTTCCCATGGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTTGCTGGACTTGGCCTCACGGTTCGGCTTACCATCTCTAGGTGGTAGACGCCATTCAAACCCACGGAGTTCTCGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCAGGGGCACGGGTTGCAGCAGGGGCCGAAACAAGAGGTCCAGAGGATACTGAGGTGCCTTGCTTATTGGGCATCTCAGCTGAAACGCTAGTGCTGGTGGCACCTTGTGATGGTCATGTGGTCTTTAACTGTGCCTGCCGTGATGTATTGGCCTGGACCTTTTCTGAGCACCAACTTGACCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTTGTGGCACGTCTGCAGgtaaactacaatcacacagtgtgatccttgattttgtgtgcaacaggggc Alignment from Spaln_aa2Genome GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCA-GGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gctggctcctccgacccctctttccctctctttgtttctcctttcttcagGGTGGCAGTGAGTCGAACCAAAGACACTCCTGCTTTCAGACCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGAGCCTTCCCATGGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTTGCTGGACTTGGCCTCACGGTTCGGCTTACCATCTCTAGGTGGTAGACGCCATTCAAACCCACGGAGTTCTcGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCAGGGGCACGGGTTGCAGCAGGGGCCGAAACAAGAGGTCCAGAGGATACTGAGGTGCCTTGCTTATTGGGCATCTCAGCTGAAACGCTAGTGCTGGTGGCACCTTGTGATGGTCATGTGGTCTTTAACTGTGCCTGCCGTGATGTATTGGCCTGGACCTTTTCTGAGCACCAACTTGACCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTTGTGGCACGTCTGCAGgtaaactacaatcacacagtgtgatccttgattttgtgtgcaacaggggc Alignment from Spaln_nt2Genome GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCA-GGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gctggctcctccgacccctctttccctctctttgtttctcctttcttcagGGTGGCAGTGAGTCGAACCAAAGACACTCCTGCTTTCAGACCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGAGCCTTCCCATGGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTTGCTGGACTTGGCCTCACGGTTCGGCTTACCATCTCTAGGTGGTAGACGCCATTCAAACCCACGGAGTTCTCGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCAGGGGCACGGGTTGCAGCAGGGGCCGAAACAAGAGGTCCAGAGGATACTGAGGTGCCTTGCTTATTGGGCATCTCAGCTGAAACGCTAGTGCTGGTGGCACCTTGTGATGGTCATGTGGTCTTTAACTGTGCCTGCCGTGATGTATTGGCCTGGACCTTTTCTGAGCACCAACTTGACCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTTGTGGCACGTCTGCAGgtaaactacaatcacacagtgtgatccttgattttgtgtgcaacaggggc Alignment from Pairagon GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAG-CCCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gctggctcctccgacccctctttccctctctttgtttctcctttcttcagGGTGGCAGTGAGTCGAACCAAAGACACTCCTGCTTTCAGACCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGAGCCTTCCCATGGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTTGCTGGACTTGGCCTCACGGTTCGGCTTACCATCTCTAGGTGGTAGACGCCATTCAAACCCACGGAGTTCTCGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCAGGGGCACGGGTTGCAGCAGGGGCCGAAACAAGAGGTCCAGAGGATACTGAGGTGCCTTGCTTATTGGGCATCTCAGCTGAAACGCTAGTGCTGGTGGCACCTTGTGATGGTCATGTGGTCTTTAACTGTGCCTGCCGTGATGTATTGGCCTGGACCTTTTCTGAGCACCAACTTGACCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTTGTGGCACGTCTGCAGgtaaactacaatcacacagtgtgatccttgattttgtgtgcaacaggggc Alignment from Exonerate_protein2genome GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCA-GGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gctggctcctccgacccctctttccctctctttgtttctcctttcttcagGGTGGCAGTGAGTCGAACCAAAGACACTCCTGCTTTCAGACCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGAGCCTTCCCATGGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTTGCTGGACTTGGCCTCACGGTTCGGCTTACCATCTCTAGGTGGTAGACGCCATTCAAACCCACGGAGTTCTCGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCAGGGGCACGGGTTGCAGCAGGGGCCGAAACAAGAGGTCCAGAGGATACTGAGGTGCCTTGCTTATTGGGCATCTCAGCTGAAACGCTAGTGCTGGTGGCACCTTGTGATGGTCATGTGGTCTTTAACTGTGCCTGCCGTGATGTATTGGCCTGGACCTTTTCTGAGCACCAACTTGACCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTTGTGGCACGTCTGCAGgtaaactacaatcacacagtgtgatccttgattttgtgtgcaacaggggc Alignment from Exonerate_coding2genome GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGCCCA-GGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gctggctcctccgacccctctttccctctctttgtttctcctttcttcagGGTGGCAGTGAGTCGAACCAAAGACACTCCTGCTTTCAGACCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGAGCCTTCCCATGGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTTGCTGGACTTGGCCTCACGGTTCGGCTTACCATCTCTAGGTGGTAGACGCCATTCAAACCCACGGAGTTCTCGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCAGGGGCACGGGTTGCAGCAGGGGCCGAAACAAGAGGTCCAGAGGATACTGAGGTGCCTTGCTTATTGGGCATCTCAGCTGAAACGCTAGTGCTGGTGGCACCTTGTGATGGTCATGTGGTCTTTAACTGTGCCTGCCGTGATGTATTGGCCTGGACCTTTTCTGAGCACCAACTTGACCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTTGTGGCACGTCTGCAGgtaaactacaatcacacagtgtgatccttgattttgtgtgcaacaggggc Alignment from GeneWise GGTGGCAGTGAGCCGCACCCAGGACACTCCTGCCTTCGGTCCTGCGCTGCCAGAAGGCGGAGGCCCCTTTGCAGCCAATGCCGATTTCCGGGCCTTTCTGTTGGCTAAGGCACTCAATGGTGAGCAAGCGGCTGGTCATGCACGCCAGTTCCACGCCATGGCTACACGCACACGCCAACAGTACCTGCAGGACCTGGCTACTAATGAAGTGACCACTACTTCGCTGGACTCGGCTTCGCGGTTTGGCCTGCCATCTCTGGGGGGTAGGCGCCGGGCAACCCCTCGGAGC-CCAGGCGCGGAGCTACAGGCGGCGGGTGCGCTGATGTGGGGCGTACGCGCGGCTCCAGGGGCGCGGGTCGCAGCGGGAGCTGAAACGAGCGGTCCGGAGGACGCCGAGGTGCCCTGCTTGTTGGGCATCTCAGCAGAGACACTGGTGCTGGTGGCACCTCGCGACGGCCGCGTGGTCTTCAATTGTGCCTGTCGCGACGTATTGGCCTGGACCTTCTCAGAGCACCAACTCGATCTGTACCACGGGCGCGGGGAGGCGATCACGCTGCGGCTCGACGGGGCCCCAGGGCAAGCCGTGGGCGAAGTCGTGGCACGTCTGCAG gctggctcctccgacccctctttccctctctttgtttctcctttcttcagGGTGGCAGTGAGTCGAACCAAAGACACTCCTGCTTTCAGACCTGCACTACCAGAAGGCGGAGGTCCCTTTGCAGCCAATGCTGACTTCCGAGCCTTCCCATGGGCTAAGGCACTCAATGGTGAGCAAGCAGCTGGGCACACAAGGCAGTTCCATGCCATGGCTACATGTACACGGCAACAGTACCTGCAGGACCTGGCTACTAATGAGGTGAGCACTACTTTGCTGGACTTGGCCTCACGGTTCGGCTTACCATCTCTAGGTGGTAGACGCCATTCAAACCCACGGAGTTCTCGGTGCAAAGCTACAGGCAGCTGATGCACTGATGTGGGGTGTGCGTGCAGCTCCAGGGGCACGGGTTGCAGCAGGGGCCGAAACAAGAGGTCCAGAGGATACTGAGGTGCCTTGCTTATTGGGCATCTCAGCTGAAACGCTAGTGCTGGTGGCACCTTGTGATGGTCATGTGGTCTTTAACTGTGCCTGCCGTGATGTATTGGCCTGGACCTTTTCTGAGCACCAACTTGACCTGTACCATGGGCGTGGGGAAGCAATCACACTGCGACTGGATGGGCCTCCAGGACAAGCTGTGGGTGATGTTGTGGCACGTCTGCAGgtaaactacaatcacacagtgtgatccttgattttgtgtgcaacaggggc #### Sipa1_ID1146_6 --> 0 - 2 Original Alignment CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCT-ACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACag ttgggcgcactaaagatcacagatttttcccctgccctccctccccgcagCTCCTGAGGAAACGTCATATCAGCAATGATATTGTGACCATTGTGTTCCAGGAACCTGGCAGCAAGCCCTTCTGTCCTCATGACAATCTGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACCTCATACaggtaagaactagggtgaacttatgtcatagggtggggtaaactatcatcat Alignment from CESAR CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCT-ACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACag ttgggcgcactaaagatcacagatttttcccctgccctccctccccgcagCTCCTGAGGAAACGTCATATCAGCAATGATATTGTGACCATTGTGTTCCAGGAACCTGGCAGCAAGCCCTTCTGTCCTCATGACAATCTGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACCTCATACaggtaagaactagggtgaacttatgtcatagggtggggtaaactatcatcat Alignment from Spaln_aa2Genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCT-ACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgggcgcactaaagatcacagatttttcccctgccctccctccccgcagCTCCTGAGGAAACGTCATATCAGCAATGATATTGTGACCATTGTGTTCCAGGAACCTGGCAGCAAGCCCTTCTGTCCTcATGACAATCTGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACCTCATACAGgtaagaactagggtgaacttatgtcatagggtggggtaaactatcatcat Alignment from Spaln_nt2Genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGC-CCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgggcgcactaaagatcacagatttttcccctgccctccctccccgcagCTCCTGAGGAAACGTCATATCAGCAATGATATTGTGACCATTGTGTTCCAGGAACCTGGCAGCAAGCCCTTCTGTCCTCATGACAATCTGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACCTCATACAGgtaagaactagggtgaacttatgtcatagggtggggtaaactatcatcat Alignment from Pairagon CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCT-ACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgggcgcactaaagatcacagatttttcccctgccctccctccccgcagCTCCTGAGGAAACGTCATATCAGCAATGATATTGTGACCATTGTGTTCCAGGAACCTGGCAGCAAGCCCTTCTGTCCTCATGACAATCTGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACCTCATACAGgtaagaactagggtgaacttatgtcatagggtggggtaaactatcatcat Alignment from Exonerate_protein2genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCT-ACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgggcgcactaaagatcacagatttttcccctgccctccctccccgcagCTCCTGAGGAAACGTCATATCAGCAATGATATTGTGACCATTGTGTTCCAGGAACCTGGCAGCAAGCCCTTCTGTCCTCATGACAATCTGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACCTCATACAGgtaagaactagggtgaacttatgtcatagggtggggtaaactatcatcat Alignment from Exonerate_coding2genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCT-ACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgggcgcactaaagatcacagatttttcccctgccctccctccccgcagCTCCTGAGGAAACGTCATATCAGCAATGATATTGTGACCATTGTGTTCCAGGAACCTGGCAGCAAGCCCTTCTGTCCTCATGACAATCTGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACCTCATACAGgtaagaactagggtgaacttatgtcatagggtggggtaaactatcatcat Alignment from GeneWise CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCT-ACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgggcgcactaaagatcacagatttttcccctgccctccctccccgcagCTCCTGAGGAAACGTCATATCAGCAATGATATTGTGACCATTGTGTTCCAGGAACCTGGCAGCAAGCCCTTCTGTCCTCATGACAATCTGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACCTCATACAGgtaagaactagggtgaacttatgtcatagggtggggtaaactatcatcat #### Sipa1_ID1150_2 --> 2 - 0 Original Alignment aaCACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGC-TACCGGGTCATCGTGCGGACCACGCAG agagccactctccaaccaaccaacaacactcctgccccgttctcttccagaaCATCAGAACTTCTTTGGGCTAGACGAGGCACTGGGCCCCGTGGCTCTGAGTCTTCAACGGGAGGAAAAAGAGGGCAGCGGAGGGGCCCCCCTACACAGCCTTCCGAGTCATTGTGCGAACCATGCAGgtaagggaagatcacagggtgcaatagcctatactttcacacatattcat Alignment from CESAR aaCACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGC-TACCGGGTCATCGTGCGGACCACGCAG agagccactctccaaccaaccaacaacactcctgccccgttctcttccagaaCATCAGAACTTCTTTGGGCTAGACGAGGCACTGGGCCCCGTGGCTCTGAGTCTTCAACGGGAGGAAAAAGAGGGCAGCGGAGGGGCCCCCCTACACAGCCTTCCGAGTCATTGTGCGAACCATGCAGgtaagggaagatcacagggtgcaatagcctatactctctttctgcctcta Alignment from Spaln_aa2Genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGC-TACCGGGTCATCGTGCGGACCACGCAG agagccactctccaaccaaccaacaacactcctgccccgttctcttccagAACATCAGAACTTCTTTGGGCTAGACGAGGCACTGGGCCCCGTGGCTCTGAGTCTTCAACGGGAGGAAAAAGAGGGCAGCGGAGGGGCCCCCCTACACAGCcTTCCGAGTCATTGTGCGAACCATGCAGgtaagggaagatcacagggtgcaatagcctatactttcacacatattcat Alignment from Spaln_nt2Genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGC-TACCGGGTCATCGTGCGGACCACGCAG agagccactctccaaccaaccaacaacactcctgccccgttctcttccagAACATCAGAACTTCTTTGGGCTAGACGAGGCACTGGGCCCCGTGGCTCTGAGTCTTCAACGGGAGGAAAAAGAGGGCAGCGGAGGGGCCCCCCTACACAGCCTTCCGAGTCATTGTGCGAACCATGCAGgtaagggaagatcacagggtgcaatagcctatactttcacacatattcat Alignment from Pairagon AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAG-CTACCGGGTCATCGTGCGGACCACGCAG agagccactctccaaccaaccaacaacactcctgccccgttctcttccagAACATCAGAACTTCTTTGGGCTAGACGAGGCACTGGGCCCCGTGGCTCTGAGTCTTCAACGGGAGGAAAAAGAGGGCAGCGGAGGGGCCCCCCTACACAGCCTTCCGAGTCATTGTGCGAACCATGCAGgtaagggaagatcacagggtgcaatagcctatactttcacacatattcat Alignment from Exonerate_protein2genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGC-TACCGGGTCATCGTGCGGACCACGCAG agagccactctccaaccaaccaacaacactcctgccccgttctcttccagAACATCAGAACTTCTTTGGGCTAGACGAGGCACTGGGCCCCGTGGCTCTGAGTCTTCAACGGGAGGAAAAAGAGGGCAGCGGAGGGGCCCCCCTACACAGCCTTCCGAGTCATTGTGCGAACCATGCAGgtaagggaagatcacagggtgcaatagcctatactttcacacatattcat Alignment from Exonerate_coding2genome AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGC-TACCGGGTCATCGTGCGGACCACGCAG agagccactctccaaccaaccaacaacactcctgccccgttctcttccagAACATCAGAACTTCTTTGGGCTAGACGAGGCACTGGGCCCCGTGGCTCTGAGTCTTCAACGGGAGGAAAAAGAGGGCAGCGGAGGGGCCCCCCTACACAGCCTTCCGAGTCATTGTGCGAACCATGCAGgtaagggaagatcacagggtgcaatagcctatactttcacacatattcat Alignment from GeneWise AACACCAGAACTTCTTTGGGCTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGC-TACCGGGTCATCGTGCGGACCACGCAG agagccactctccaaccaaccaacaacactcctgccccgttctcttccagAACATCAGAACTTCTTTGGGCTAGACGAGGCACTGGGCCCCGTGGCTCTGAGTCTTCAACGGGAGGAAAAAGAGGGCAGCGGAGGGGCCCCCCTACACAGCCTTCCGAGTCATTGTGCGAACCATGCAGgtaagggaagatcacagggtgcaatagcctatactttcacacatattcat #### Slc15a3_ID3029_4 --> 0 - 0 Original Alignment ATGCAGTCCACCTATGTCCTC-CAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttagggctctacctcactatgtctcctaggtaaaatctgtgctcttctagATGCAGTCAACTTACATCCTCCCAAGGTCTACACCTCCATATCCCAAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtgagtgagtaatgctatgctggctccatcttgaccaggttggtgagaat Alignment from CESAR ATGCAGTCCACCTATGTCCTC-CAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttagggctctacctcactatgtctcctaggtaaaatctgtgctcttctagATGCAGTCAACTTACATCCTCCCAAGGTCTACACCTCCATATCCCAAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtgagtgagtaatgctatgctggctccatcttgaccaggttggtgagaat Alignment from Spaln_aa2Genome ATGCAGTCCACCTATGTCCTC-CAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttagggctctacctcactatgtctcctaggtaaaatctgtgctcttctagATGCAGTCAACTTACATCCTCcCAAGGTCTACACCTCCATATCCCAAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtgagtgagtaatgctatgctggctccatcttgaccaggttggtgagaat Alignment from Spaln_nt2Genome ATGCAGTCCACCTATGTCCTCC-AAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttagggctctacctcactatgtctcctaggtaaaatctgtgctcttctagATGCAGTCAACTTACATCCTCCCAAGGTCTACACCTCCATATCCCAAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtgagtgagtaatgctatgctggctccatcttgaccaggttggtgagaat Alignment from Pairagon ATGCAGTCCACCTATGTCCT-CCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttagggctctacctcactatgtctcctaggtaaaatctgtgctcttctagATGCAGTCAACTTACATCCTCCCAAGGTCTACACCTCCATATCCCAAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtgagtgagtaatgctatgctggctccatcttgaccaggttggtgagaat Alignment from Exonerate_protein2genome ATGCAGTCCACCTATGTCCTC-CAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttagggctctacctcactatgtctcctaggtaaaatctgtgctcttctagATGCAGTCAACTTACATCCTCCCAAGGTCTACACCTCCATATCCCAAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtgagtgagtaatgctatgctggctccatcttgaccaggttggtgagaat Alignment from Exonerate_coding2genome ATGCAGTCCACCTATGTCCTC-CAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttagggctctacctcactatgtctcctaggtaaaatctgtgctcttctagATGCAGTCAACTTACATCCTCCCAAGGTCTACACCTCCATATCCCAAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtgagtgagtaatgctatgctggctccatcttgaccaggttggtgagaat Alignment from GeneWise ATGCAGTCCACCTATGTC-CTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttagggctctacctcactatgtctcctaggtaaaatctgtgctcttctagATGCAGTCAACTTACATCCTCCCAAGGTCTACACCTCCATATCCCAAACATCTTCAGGACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtgagtgagtaatgctatgctggctccatcttgaccaggttggtgagaat #### Slc18a2_ID12936_4 --> 2 - 1 Original Alignment tgTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGA-ATCGGCTCCTCTTGCTCATCTGTGGCTg gatatgtcggtcctattgacaagggcaatcatcgcgtcttctccccgcagtgTTTGCATTTTCTAGTAGTTATGCCTTTCTGCTGATTGCCAAGTCACTGCAGGGACATTGGTTCATCCTGCTCATCTGTGGCTggtgggcttaaaattcagtgtatggatagatgagccaaggactcatatgta Alignment from CESAR tgTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGA-ATCGGCTCCTCTTGCTCATCTGTGGCTg gatatgtcggtcctattgacaagggcaatcatcgcgtcttctccccgcagtgTTTGCATTTTCTAGTAGTTATGCCTTTCTGCTGATTGCCAAGTCACTGCAGGGACATTGGTTCATCCTGCTCATCTGTGGCTggtgggcttaaaattcagtgtatggatagatgagccaaggactcatatgta Alignment from Spaln_aa2Genome TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGA-ATCGGCTCCTCTTGCTCATCTGTGGCTG gatatgtcggtcctattgacaagggcaatcatcgcgtcttctccccgcagTGTTTGCATTTTCTAGTAGTTATGCCTTTCTGCTGATTGCCAAGTCACTGCAGGGAcATTGGTTCATCCTGCTCATCTGTGGCTGgtgggcttaaaattcagtgtatggatagatgagccaaggactcatatgta Alignment from Spaln_nt2Genome TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGA-ATCGGCTCCTCTTGCTCATCTGTGGCTG gatatgtcggtcctattgacaagggcaatcatcgcgtcttctccccgcagTGTTTGCATTTTCTAGTAGTTATGCCTTTCTGCTGATTGCCAAGTCACTGCAGGGACATTGGTTCATCCTGCTCATCTGTGGCTGgtgggcttaaaattcagtgtatggatagatgagccaaggactcatatgta Alignment from Pairagon TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGA-ATCGGCTCCTCTTGCTCATCTGTGGCTG gatatgtcggtcctattgacaagggcaatcatcgcgtcttctccccgcagTGTTTGCATTTTCTAGTAGTTATGCCTTTCTGCTGATTGCCAAGTCACTGCAGGGACATTGGTTCATCCTGCTCATCTGTGGCTGgtgggcttaaaattcagtgtatggatagatgagccaaggactcatatgta Alignment from Exonerate_protein2genome TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGA-ATCGGCTCCTCTTGCTCATCTGTGGCTG gatatgtcggtcctattgacaagggcaatcatcgcgtcttctccccgcagTGTTTGCATTTTCTAGTAGTTATGCCTTTCTGCTGATTGCCAAGTCACTGCAGGGACATTGGTTCATCCTGCTCATCTGTGGCTGgtgggcttaaaattcagtgtatggatagatgagccaaggactcatatgta Alignment from Exonerate_coding2genome gatatgtcggtcctattgacaagggcaatcatcgcgtcttctccccgcagtgtttgcattttctagtagttatgcctttctgctgattgccaagtcactgcagggacattggttcatcctgctcatctgtggctggtgggcttaaaattcagtgtatggatagatgagccaaggactcatatgta Alignment from GeneWise TGTTTGCCTTCTCCAGCAGCTATGCCTTCCTGCTGATCGCCAGGTCCCTGCAGGGA-ATCGGCTCCTCTTGCTCATCTGTGGCTG gatatgtcggtcctattgacaagggcaatcatcgcgtcttctccccgcagTGTTTGCATTTTCTAGTAGTTATGCCTTTCTGCTGATTGCCAAGTCACTGCAGGGACATTGGTTCATCCTGCTCATCTGTGGCTGgtgggcttaaaattcagtgtatggatagatgagccaaggactcatatgta #### Slc18a2_ID12940_8 --> 0 - 1 Original Alignment AGTCAGAAGGGGACACCTCTTACG-ACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAg gataagggccaacaatgggtaagtttctgtatccattcctctgggtccagAGTCAGAAGGGGACACCTCTCACACACCTTACTGGAAGACCCATACATTCTGATAGCTGCAggtgagaagactttaattttttgatggcatgaaaaatactagagggataga Alignment from CESAR AGTCAGAAGGGGACACCTCTTACG-ACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAg gataagggccaacaatgggtaagtttctgtatccattcctctgggtccagAGTCAGAAGGGGACACCTCTCACACACCTTACTGGAAGACCCATACATTCTGATAGCTGCAggtgagaagactttaattttttgatggcatgaaaaatactagagggataga Alignment from Spaln_aa2Genome AGTCAGAAGGGGACACCTCTTACGACC-TTGCTGAAGGACCCATACATTCTCATCGCTGCAG gataagggccaacaatgggtaagtttctgtatccattcctctgggtccagAGTCAGAAGGGGACACCTCTCACACACcTTACTGGAAGACCCATACATTCTGATAGCTGCAGgtgagaagactttaattttttgatggcatgaaaaatactagagggataga Alignment from Spaln_nt2Genome AGTCAGAAGGGGACACCTCTTACG-ACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAG gataagggccaacaatgggtaagtttctgtatccattcctctgggtccagAGTCAGAAGGGGACACCTCTCACACACCTTACTGGAAGACCCATACATTCTGATAGCTGCAGgtgagaagactttaattttttgatggcatgaaaaatactagagggataga Alignment from Pairagon GTGCTCCAGCCATCCCGAGTGCAGCCAGAAAGTCAGAAGGGGACACCTCTTACG-ACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAG gataagggccaacaatgggtaagtttctgtatccattcctctgggtccag------------------------------AGTCAGAAGGGGACACCTCTCACACACCTTACTGGAAGACCCATACATTCTGATAGCTGCAGgtgagaagactttaattttttgatggcatgaaaaatactagagggataga Alignment from Exonerate_protein2genome AGTCAGAAGGGGACACCTCTTACG-ACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAG gataagggccaacaatgggtaagtttctgtatccattcctctgggtccagAGTCAGAAGGGGACACCTCTCACACACCTTACTGGAAGACCCATACATTCTGATAGCTGCAGgtgagaagactttaattttttgatggcatgaaaaatactagagggataga Alignment from Exonerate_coding2genome CTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAAAGTCAGAAGGGGACACCTCTTACG-ACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAG gataagGGCCAACAATGGGTAAGTTTCTGTATCCATTCCTCTGGGTCCAGAGTCAGAAGGGGACACCTCTCACACACCTTACTGGAAGACCCATACATTCTGATAGCTGCAGgtgagaagactttaattttttgatggcatgaaaaatactagagggataga Alignment from GeneWise TCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAAAGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGACCCATACATTCTCATCGCTGCAG gataagggccaacaatgggtaagTTTCTGTATCCATTCCTCTGGGTCCAGAGTCAGA------------AGGGGACACCTCTCACACACCTTACTGGAAGACCCATACATTCTGATAGCTGCAGgtgagaagactttaattttttgatggcatgaaaaatactagagggataga #### Slc22a12_ID1790_7 --> 1 - 1 Original Alignment gTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACA-GGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATg gagcaattgacccaggctagtctgtctaccaaatgcgttcttgatttcaggTTTTCCTTTGGCTTCACCTTTTATGGCCTAGCCATTGAC---------CTTGGAAGCAATATATTCCTCCTCCAGTCAATCATTGGGATAGTGGATTTCCCAGTAAAGACACGGCAGCTTGCTCTTGATCACCCGTTTGGGCCAACACCTTTGTCAGGTCAGCTTTCTGGTGCTCCCTGGACTATGTGTCCTTTCCAATATACTGGTGCCCCATggtgagacacctcttgctgagggtgagcgtacagacacaaaacttgtaatg Alignment from CESAR gTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACA-GGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATg gagcaattgacccaggctagtctgtctaccaaatgcgttcttgatttcaggTTTTCCTTTGGCTTCACCTTTTATGGCCTAGCCATTGAC---------CTTGGAAGCAATATATTCCTCCTCCAGTCAATCATTGGGATAGTGGATTTCCCAGTAAAGACACGGCAGCTTGCTCTTGATCACCCGTTTGGGCCAACACCTTTGTCAGGTCAGCTTTCTGGTGCTCCCTGGACTATGTGTCCTTTCCAATATACTGGTGCCCCATggtgagacacctcttgctgagggtgagcgtacagacacaaaacttgtaatg Alignment from Spaln_aa2Genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACA-GGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcaattgacccaggctagtctgtctaccaaatgcgttcttgatttcagGTTTTCCTTTGGCTTCACCTTTTATGGCCTAGCCATTGAC---------CTTGGAAGCAATATATTCCTCCTCCAGTCAATCATTGGGATAGTGGATTTCCCAGTAAAGACAcGGCAGCTTGCTCTTGATCACCCGTTTGGGCCAACACCTTTGTCAGGTCAGCTTTCTGGTGCTCCCTGGACTATGTGTCCTTTCCAATATACTGGTGCCCCATGgtgagacacctcttgctgagggtgagcgtacagacacaaaacttgtaatg Alignment from Spaln_nt2Genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACA-GGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcaattgacccaggctagtctgtctaccaaatgcgttcttgatttcagGTTTTCCTTTGGCTTCACCTTTTATGGCCTAGCCATTGA---------CCTTGGAAGCAATATATTCCTCCTCCAGTCAATCATTGGGATAGTGGATTTCCCAGTAAAGACACGGCAGCTTGCTCTTGATCACCCGTTTGGGCCAACACCTTTGTCAGGTCAGCTTTCTGGTGCTCCCTGGACTATGTGTCCTTTCCAATATACTGGTGCCCCATGgtgagacacctcttgctgagggtgagcgtacagacacaaaacttgtaatg Alignment from Pairagon GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACA-GGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcaattgacccaggctagtctgtctaccaaatgcgttcttgatttcagGTTTTCCTTTGGCTTCACCTTTTATGGCCTAGCCATTGA---------CCTTGGAAGCAATATATTCCTCCTCCAGTCAATCATTGGGATAGTGGATTTCCCAGTAAAGACACGGCAGCTTGCTCTTGATCACCCGTTTGGGCCAACACCTTTGTCAGGTCAGCTTTCTGGTGCTCCCTGGACTATGTGTCCTTTCCAATATACTGGTGCCCCATGgtgagacacctcttgctgagggtgagcgtacagacacaaaacttgtaatg Alignment from Exonerate_protein2genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACA-GGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcaattgacccaggctagtctgtctaccaaatgcgttcttgatttcagGTTTTCCTTTGGCTTCACCTTTTATGGCCTAGCCATTGAC---------CTTGGAAGCAATATATTCCTCCTCCAGTCAATCATTGGGATAGTGGATTTCCCAGTAAAGACACGGCAGCTTGCTCTTGATCACCCGTTTGGGCCAACACCTTTGTCAGGTCAGCTTTCTGGTGCTCCCTGGACTATGTGTCCTTTCCAATATACTGGTGCCCCATGgtgagacacctcttgctgagggtgagcgtacagacacaaaacttgtaatg Alignment from Exonerate_coding2genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACA-GGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcaattgacccaggctagtctgtctaccaaatgcgttcttgatttcagGTTTTCCTTTGGCTTCACCTTTTATGGCCTAGCCATTGAC---------CTTGGAAGCAATATATTCCTCCTCCAGTCAATCATTGGGATAGTGGATTTCCCAGTAAAGACACGGCAGCTTGCTCTTGATCACCCGTTTGGGCCAACACCTTTGTCAGGTCAGCTTTCTGGTGCTCCCTGGACTATGTGTCCTTTCCAATATACTGGTGCCCCATGgtgagacacctcttgctgagggtgagcgtacagacacaaaacttgtaatg Alignment from GeneWise GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAG-ACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gagcaattgacccaggctagtctgtctaccaaatgcgttcttgatttcagGTTTTCCTTTGGCTTCACCTTTTATGGCCTAGCCATTGACCTT---------GGAAGCAATATATTCCTCCTCCAGTCAATCATTGGGATAGTGGATTTCCCAGTAAAGACACGGCAGCTTGCTCTTGATCACCCGTTTGGGCCAACACCTTTGTCAGGTCAGCTTTCTGGTGCTCCCTGGACTATGTGTCCTTTCCAATATACTGGTGCCCCATGgtgagacacctcttgctgagggtgagcgtacagacacaaaacttgtaatg #### Slc22a12_ID1791_6 --> 0 - 2 Original Alignment GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCC-AGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCtg tggactgggggtggacctagagactttgcttctgcttgcaaccttggcagGTACTGTGGTCAGCTATGGACAAGGAACCAAGCAGGGACCAGGCTGGTGCCCAGTCTTGGCACTTTACTTCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCctgtacttgcttctacctaaaattgtcagccagtggatgttgccctttccct Alignment from CESAR GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCC-AGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCtg tggactgggggtggacctagagactttgcttctgcttgcaaccttggcagGTACTGTGGTCAGCTATGGACAAGGAACCAAGCAGGGACCAGGCTGGTGCCCAGTCTTGGCACTTTACTTCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCctgtacttgcttctacctaaaattgtcagccagtggatgttgccctttccct Alignment from Spaln_aa2Genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCC-AGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG tggactgggggtggacctagagactttgcttctgcttgcaaccttggcagGTACTGTGGTCAGCTATGGACAAGGAACCAAGCAGGGACCAGGCTGGTGCCcAGTCTTGGCACTTTACTTCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCCTgtacttgcttctacctaaaattgtcagccagtggatgttgccctttccct Alignment from Spaln_nt2Genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCC-AGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG tggactgggggtggacctagagactttgcttctgcttgcaaccttggcagGTACTGTGGTCAGCTATGGACAAGGAACCAAGCAGGGACCAGGCTGGTGCCCAGTCTTGGCACTTTACTTCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCCTgtacttgcttctacctaaaattgtcagccagtggatgttgccctttccct Alignment from Pairagon GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTG-CCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG tggactgggggtggacctagagactttgcttctgcttgcaaccttggcagGTACTGTGGTCAGCTATGGACAAGGAACCAAGCAGGGACCAGGCTGGTGCCCAGTCTTGGCACTTTACTTCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCCTgtacttgcttctacctaaaattgtcagccagtggatgttgccctttccct Alignment from Exonerate_protein2genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCC-AGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG tggactgggggtggacctagagactttgcttctgcttgcaaccttggcagGTACTGTGGTCAGCTATGGACAAGGAACCAAGCAGGGACCAGGCTGGTGCCCAGTCTTGGCACTTTACTTCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCCTgtacttgcttctacctaaaattgtcagccagtggatgttgccctttccct Alignment from Exonerate_coding2genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCC-AGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG tggactgggggtggacctagagactttgcttctgcttgcaaccttggcagGTACTGTGGTCAGCTATGGACAAGGAACCAAGCAGGGACCAGGCTGGTGCCCAGTCTTGGCACTTTACTTCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCCTgtacttgcttctacctaaaattgtcagccagtggatgttgccctttccct Alignment from GeneWise GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCC-AGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG tggactgggggtggacctagagactttgcttctgcttgcaaccttggcagGTACTGTGGTCAGCTATGGACAAGGAACCAAGCAGGGACCAGGCTGGTGCCCAGTCTTGGCACTTTACTTCACACACCTGGGTTGCGCCACCGAACCATCATCTCTATGCTGTGCCTgtacttgcttctacctaaaattgtcagccagtggatgttgccctttccct #### Slc22a20_ID1351_2 --> 0 - 2 Original Alignment TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTG-TTTGGTGGTCTTGCTGACag gtcgatgagtaatcacaagcaaagcctactgtatgcctcctcttccatagTGGGACCTGGTGTGCGAGACCCGCACTCTACATGACCTGGCTCAATCTATCTATATGTCTGGAGTGTTGGTTGGAGCTGCCTTGCTTCGGTTGTCTAGCAGACaggtaacgtttttggataccaactatttcctcactctcatatcgtcatttct Alignment from CESAR TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTG-TTTGGTGGTCTTGCTGACag gtcgatgagtaatcacaagcaaagcctactgtatgcctcctcttccatagTGGGACCTGGTGTGCGAGACCCGCACTCTACATGACCTGGCTCAATCTATCTATATGTCTGGAGTGTTGGTTGGAGCTGCCTTGCTTCGGTTGTCTAGCAGACaggtaacgtttttggataccaactatttcctcactctcatatcgtcatttct Alignment from Spaln_aa2Genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTG-TTTGGTGGTCTTGCTGACAG gtcgatgagtaatcacaagcaaagcctactgtatgcctcctcttccatagTGGGACCTGGTGTGCGAGACCCGCACTCTACATGACCTGGCTCAATCTATCTATATGTCTGGAGTGTTGGTTGGAGCTGCCTTGcTTCGGTTGTCTAGCAGACAGgtaacgtttttggataccaactatttcctcactctcatatcgtcatttct Alignment from Spaln_nt2Genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTT-GGTGGTCTTGCTGACAG gtcgatgagtaatcacaagcaaagcctactgtatgcctcctcttccatagTGGGACCTGGTGTGCGAGACCCGCACTCTACATGACCTGGCTCAATCTATCTATATGTCTGGAGTGTTGGTTGGAGCTGCCTTGCTTCGGTTGTCTAGCAGACAGgtaacgtttttggataccaactatttcctcactctcatatcgtcatttct Alignment from Pairagon TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTG-TTTGGTGGTCTTGCTGACAG gtcgatgagtaatcacaagcaaagcctactgtatgcctcctcttccatagTGGGACCTGGTGTGCGAGACCCGCACTCTACATGACCTGGCTCAATCTATCTATATGTCTGGAGTGTTGGTTGGAGCTGCCTTGCTTCGGTTGTCTAGCAGACAGgtaacgtttttggataccaactatttcctcactctcatatcgtcatttct Alignment from Exonerate_protein2genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTG-TTTGGTGGTCTTGCTGACAG gtcgatgagtaatcacaagcaaagcctactgtatgcctcctcttccatagTGGGACCTGGTGTGCGAGACCCGCACTCTACATGACCTGGCTCAATCTATCTATATGTCTGGAGTGTTGGTTGGAGCTGCCTTGCTTCGGTTGTCTAGCAGACAGgtaacgtttttggataccaactatttcctcactctcatatcgtcatttct Alignment from Exonerate_coding2genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTG-TTTGGTGGTCTTGCTGACAG gtcgatgagtaatcacaagcaaagcctactgtatgcctcctcttccatagTGGGACCTGGTGTGCGAGACCCGCACTCTACATGACCTGGCTCAATCTATCTATATGTCTGGAGTGTTGGTTGGAGCTGCCTTGCTTCGGTTGTCTAGCAGACAGgtaacgtttttggataccaactatttcctcactctcatatcgtcatttct Alignment from GeneWise TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAGG-- gtcgatgagtaatcacaagcaaagcctactgtatgcctcctcttccatagTGGGACCTGGTGTGCGAGACCCGCACTCTACATGACCTGGCTCAATCTATCTATATGTCTGGAGTGTTGGTTGGAGCTGCCTTGCTT---------------CGGTTgtctagcagacaggtaacgtttttggataccaactatttcctcactctcatatcgtcatttct #### Slc22a6_ID2281_2 --> 0 - 2 Original Alignment TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCC-CAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACag cccctaaaattgacaaatttcttgctcattacattctgctttttcctcagTGGAACCTTGTCTGCTCACATAGAGCCTTCCACCGATTGGCCCCAGTCACTGTTCATGGTGGGAGTGTTACTGGGCGCCATGATGTTTGGTTACCTTGCGGATaggtgagatctgaggagtgaaagtgctcatttgcagtgagattaggggtacc Alignment from CESAR TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCC-CAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACag cccctaaaattgacaaatttcttgctcattacattctgctttttcctcagTGGAACCTTGTCTGCTCACATAGAGCCTTCCACCGATTGGCCCCAGTCACTGTTCATGGTGGGAGTGTTACTGGGCGCCATGATGTTTGGTTACCTTGCGGATaggtgagatctgaggagtgaaagtgctcatttgcagtgagattaggggtacc Alignment from Spaln_aa2Genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCC-CAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG cccctaaaattgacaaatttcttgctcattacattctgctttttcctcagTGGAACCTTGTCTGCTCACATAGAGCCTTCCACCGATTGGCCcCAGTCACTGTTCATGGTGGGAGTGTTACTGGGCGCCATGATGTTTGGTTACCTTGCGGATAGgtgagatctgaggagtgaaagtgctcatttgcagtgagattaggggtacc Alignment from Spaln_nt2Genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCCC-AGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG cccctaaaattgacaaatttcttgctcattacattctgctttttcctcagTGGAACCTTGTCTGCTCACATAGAGCCTTCCACCGATTGGCCCCAGTCACTGTTCATGGTGGGAGTGTTACTGGGCGCCATGATGTTTGGTTACCTTGCGGATAGgtgagatctgaggagtgaaagtgctcatttgcagtgagattaggggtacc Alignment from Pairagon TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGG-CCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG cccctaaaattgacaaatttcttgctcattacattctgctttttcctcagTGGAACCTTGTCTGCTCACATAGAGCCTTCCACCGATTGGCCCCAGTCACTGTTCATGGTGGGAGTGTTACTGGGCGCCATGATGTTTGGTTACCTTGCGGATAGgtgagatctgaggagtgaaagtgctcatttgcagtgagattaggggtacc Alignment from Exonerate_protein2genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCC-CAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG cccctaaaattgacaaatttcttgctcattacattctgctttttcctcagTGGAACCTTGTCTGCTCACATAGAGCCTTCCACCGATTGGCCCCAGTCACTGTTCATGGTGGGAGTGTTACTGGGCGCCATGATGTTTGGTTACCTTGCGGATAGgtgagatctgaggagtgaaagtgctcatttgcagtgagattaggggtacc Alignment from Exonerate_coding2genome TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTGGCC-CAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG cccctaaaattgacaaatttcttgctcattacattctgctttttcctcagTGGAACCTTGTCTGCTCACATAGAGCCTTCCACCGATTGGCCCCAGTCACTGTTCATGGTGGGAGTGTTACTGGGCGCCATGATGTTTGGTTACCTTGCGGATAGgtgagatctgaggagtgaaagtgctcatttgcagtgagattaggggtacc Alignment from GeneWise TGGAACCTTGTGTGCTCTCATCGGGCCTTCCGCCAGCTG-GCCCAGTCCCTGTTCATGGTGGGAGTGTTACTGGGAGCCATGATGTTTGGCTACCTGGCGGACAG cccctaaaattgacaaatttcttgctcattacattctgctttttcctcagTGGAACCTTGTCTGCTCACATAGAGCCTTCCACCGATTGGCCCCAGTCACTGTTCATGGTGGGAGTGTTACTGGGCGCCATGATGTTTGGTTACCTTGCGGATAGgtgagatctgaggagtgaaagtgctcatttgcagtgagattaggggtacc #### Slc29a2_ID792_6 --> 2 - 0 Original Alignment gtGGCGTGGATGCCCAGACCTCTGCTCTTGGA-TACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG ctacgaaggagcagcattgggagacttgcttttgtgttccctccctacaggtGGTGTGGATGCCCAGACCTCTGCTCTTGGACTACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtgagttgctgcatagtttaggttatgcaccattttaacatctaaaaaat Alignment from CESAR gtGGCGTGGATGCCCAGACCTCTGCTCTTGGA-TACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG ctacgaaggagcagcattgggagacttgcttttgtgttccctccctacaggtGGTGTGGATGCCCAGACCTCTGCTCTTGGACTACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtgagttgctgcatagtttaggttatgcaccattttaacatctaaaaaat Alignment from Spaln_aa2Genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGA-TACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG ctacgaaggagcagcattgggagacttgcttttgtgttccctccctacagGTGGTGTGGATGCCCAGACCTCTGCTCTTGGAcTACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtgagttgctgcatagtttaggttatgcaccattttaacatctaaaaaat Alignment from Spaln_nt2Genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGA-TACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG ctacgaaggagcagcattgggagacttgcttttgtgttccctccctacagGTGGTGTGGATGCCCAGACCTCTGCTCTTGGACTACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtgagttgctgcatagtttaggttatgcaccattttaacatctaaaaaat Alignment from Pairagon GTGGCGTGGATGCCCAGACCTCTGCTCTTGGA-TACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG ctacgaaggagcagcattgggagacttgcttttgtgttccctccctacagGTGGTGTGGATGCCCAGACCTCTGCTCTTGGACTACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtgagttgctgcatagtttaggttatgcaccattttaacatctaaaaaat Alignment from Exonerate_protein2genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGA-TACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG ctacgaaggagcagcattgggagacttgcttttgtgttccctccctacagGTGGTGTGGATGCCCAGACCTCTGCTCTTGGACTACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtgagttgctgcatagtttaggttatgcaccattttaacatctaaaaaat Alignment from Exonerate_coding2genome GTGGCGTGGATGCCCAGACCTCTGCTCTTGGA-TACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG ctacgaaggagcagcattgggagacttgcttttgtgttccctccctacagGTGGTGTGGATGCCCAGACCTCTGCTCTTGGACTACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtgagttgctgcatagtttaggttatgcaccattttaacatctaaaaaat Alignment from GeneWise GTGGCGTGGATGCCCAGACCTCTGCTCTT-GGATACTTCATCACACCCTGTGTGGGCATCCTCCTCTCCATCGTATGTTACCTCAGCCTGCCTCATCTG ctacgaaggagcagcattgggagacttgcttttgtgttccctccctacagGTGGTGTGGATGCCCAGACCTCTGCTCTTGGACTACTTCATCACACCCTGTGTGGGCATCCTCCTCCCCATTGTATGTTACCTCAGCCTGCCTCACCTGgtgagttgctgcatagtttaggttatgcaccattttaacatctaaaaaat #### Slc29a2_ID794_8 --> 2 - 0 Original Alignment atGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGC-CCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG ccttatgcatctccttgatgccatatgtttgtttgtttatacctccacagatGCGAAGAATGGGGTTCCTATCAGTCCTCAGCAGGCTAGTCCCAACTCTTGAGCTTGACCCGGAGAGGGAGCCAGAGCCAGAGCAGCCACAGAAACCAGGAAAACCCTCGGTCTTTGTGGTTTTCCGGAAAgtgagataccttgtgcagctgggggcagagggttgcatggtgcaacgggg Alignment from CESAR atGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGC-CCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG ccttatgcatctccttgatgccatatgtttgtttgtttatacctccacagatGCGAAGAATGGGGTTCCTATCAGTCCTCAGCAGGCTAGTCCCAACTCTTGAGCTTGACCCGGAGAGGGAGCCAGAGCCAGAGCAGCCACAGAAACCAGGAAAACCCTCGGTCTTTGTGGTTTTCCGGAAAgtgagataccttgtgcagctgggggcagagggttgcatggtgcaacgggg Alignment from Spaln_aa2Genome ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGC-CCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG ccttatgcatctccttgatgccatatgtttgtttgtttatacctccacagATGCGAAGAATGGGGTTCCTATCAGTCCTCAGCAGGCTAGTcCCAACTCTTGAGCTTGACCCGGAGAGGGAGCCAGAGCCAGAGCAGCCACAGAAACCAGGAAAACCCTCGGTCTTTGTGGTTTTCCGGAAAgtgagataccttgtgcagctgggggcagagggttgcatggtgcaacgggg Alignment from Spaln_nt2Genome ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAG-CCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG ccttatgcatctccttgatgccatatgtttgtttgtttatacctccacagATGCGAAGAATGGGGTTCCTATCAGTCCTCAGCAGGCTAGTCCCAACTCTTGAGCTTGACCCGGAGAGGGAGCCAGAGCCAGAGCAGCCACAGAAACCAGGAAAACCCTCGGTCTTTGTGGTTTTCCGGAAAgtgagataccttgtgcagctgggggcagagggttgcatggtgcaacgggg Alignment from Pairagon ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAG-CCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG ccttatgcatctccttgatgccatatgtttgtttgtttatacctccacagATGCGAAGAATGGGGTTCCTATCAGTCCTCAGCAGGCTAGTCCCAACTCTTGAGCTTGACCCGGAGAGGGAGCCAGAGCCAGAGCAGCCACAGAAACCAGGAAAACCCTCGGTCTTTGTGGTTTTCCGGAAAgtgagataccttgtgcagctgggggcagagggttgcatggtgcaacgggg Alignment from Exonerate_protein2genome ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGC-CCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG ccttatgcatctccttgatgccatatgtttgtttgtttatacctccacagATGCGAAGAATGGGGTTCCTATCAGTCCTCAGCAGGCTAGTCCCAACTCTTGAGCTTGACCCGGAGAGGGAGCCAGAGCCAGAGCAGCCACAGAAACCAGGAAAACCCTCGGTCTTTGTGGTTTTCCGGAAAgtgagataccttgtgcagctgggggcagagggttgcatggtgcaacgggg Alignment from Exonerate_coding2genome ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGC-CCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG ccttatgcatctccttgatgccatatgtttgtttgtttatacctccacagATGCGAAGAATGGGGTTCCTATCAGTCCTCAGCAGGCTAGTCCCAACTCTTGAGCTTGACCCGGAGAGGGAGCCAGAGCCAGAGCAGCCACAGAAACCAGGAAAACCCTCGGTCTTTGTGGTTTTCCGGAAAgtgagataccttgtgcagctgggggcagagggttgcatggtgcaacgggg Alignment from GeneWise ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCC-AGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG ccttatgcatctccttgatgccatatgtttgtttgtttatacctccacagATGCGAAGAATGGGGTTCCTATCAGTCCTCAGCAGGCTAGTCCCAACTCTTGAGCTTGACCCGGAGAGGGAGCCAGAGCCAGAGCAGCCACAGAAACCAGGAAAACCCTCGGTCTTTGTGGTTTTCCGGAAAgtgagataccttgtgcagctgggggcagagggttgcatggtgcaacgggg #### Slc29a2_ID796_10 --> 2 - 0 Original Alignment gtCTGTTCTTCAACCCTATCTGTTGC-TTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG gtgggtaggacctggggactgggttgagttctcttcccctctctttccaggtCTGTTCTTCAACCCTATCTGTTGCCTTTCTGCTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtgagattctgggccaaacaactgagcagcactcactagaagactagagg Alignment from CESAR gtCTGTTCTTCAACCCTATCTGTTGC-TTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG gtgggtaggacctggggactgggttgagttctcttcccctctctttccaggtCTGTTCTTCAACCCTATCTGTTGCCTTTCTGCTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtgagattctgggccaaacaactgagcagcactcactagaagactagagg Alignment from Spaln_aa2Genome GTCTGTTCTTCAACCCTATCTGTTGC-TTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG gtgggtaggacctggggactgggttgagttctcttcccctctctttccagGTCTGTTCTTCAACCCTATCTGTTGCcTTTCTGCTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtgagattctgggccaaacaactgagcagcactcactagaagactagagg Alignment from Spaln_nt2Genome GTCTGTTCTTCAACCCTATCTGTTG-CTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG gtgggtaggacctggggactgggttgagttctcttcccctctctttccagGTCTGTTCTTCAACCCTATCTGTTGCCTTTCTGCTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtgagattctgggccaaacaactgagcagcactcactagaagactagagg Alignment from Pairagon GTCTGTTCTTCAACCCTATCTGTTG-CTTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG gtgggtaggacctggggactgggttgagttctcttcccctctctttccagGTCTGTTCTTCAACCCTATCTGTTGCCTTTCTGCTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtgagattctgggccaaacaactgagcagcactcactagaagactagagg Alignment from Exonerate_protein2genome GTCTGTTCTTCAACCCTATCTGTTGC-TTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG gtgggtaggacctggggactgggttgagttctcttcccctctctttccagGTCTGTTCTTCAACCCTATCTGTTGCCTTTCTGCTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtgagattctgggccaaacaactgagcagcactcactagaagactagagg Alignment from Exonerate_coding2genome GTCTGTTCTTCAACCCTATCTGTTGC-TTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG gtgggtaggacctggggactgggttgagttctcttcccctctctttccagGTCTGTTCTTCAACCCTATCTGTTGCCTTTCTGCTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtgagattctgggccaaacaactgagcagcactcactagaagactagagg Alignment from GeneWise GTCTGTTCTTCAACCCTATCTGTTGC-TTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG gtgggtaggacctggggactgggttgagttctcttcccctctctttccagGTCTGTTCTTCAACCCTATCTGTTGCCTTTCTGCTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtgagattctgggccaaacaactgagcagcactcactagaagactagagg #### Slc3a2_ID2300_9 --> 0 - 0 Original Alignment CCTGCGAAGGCCCCACTCATGCCGTGG-AATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG atgggagatcagttctttgttttttaaacccccttcccccctctctttagCCTGTGAAGGCCCCACTGATGCCTTGGCAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGTCTTAACATGACAGTGAAGgtgggtagatgcagactgctcctcagagtagtcaagtcttgtacagatgg Alignment from CESAR CCTGCGAAGGCCCCACTCATGCCGTGG-AATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG atgggagatcagttctttgttttttaaacccccttcccccctctctttagCCTGTGAAGGCCCCACTGATGCCTTGGCAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGTCTTAACATGACAGTGAAGgtgggtagatgcagactgctcctcagagtagtcaagtcttgtacagatgg Alignment from Spaln_aa2Genome CCTGCGAAGGCCCCACTCATGCCGTGG-AATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG atgggagatcagttctttgttttttaaacccccttcccccctctctttagCCTGTGAAGGCCCCACTGATGCCTTGGcAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGTCTTAACATGACAGTGAAGgtgggtagatgcagactgctcctcagagtagtcaagtcttgtacagatgg Alignment from Spaln_nt2Genome CCTGCGAAGGCCCCACTCATGCCGTGG-AATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG atgggagatcagttctttgttttttaaacccccttcccccctctctttagCCTGTGAAGGCCCCACTGATGCCTTGGCAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGTCTTAACATGACAGTGAAGgtgggtagatgcagactgctcctcagagtagtcaagtcttgtacagatgg Alignment from Pairagon CCTGCGAAGGCCCCACTCATGCCGTGG-AATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG atgggagatcagttctttgttttttaaacccccttcccccctctctttagCCTGTGAAGGCCCCACTGATGCCTTGGCAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGTCTTAACATGACAGTGAAGgtgggtagatgcagactgctcctcagagtagtcaagtcttgtacagatgg Alignment from Exonerate_protein2genome CCTGCGAAGGCCCCACTCATGCCGTGG-AATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG atgggagatcagttctttgttttttaaacccccttcccccctctctttagCCTGTGAAGGCCCCACTGATGCCTTGGCAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGTCTTAACATGACAGTGAAGgtgggtagatgcagactgctcctcagagtagtcaagtcttgtacagatgg Alignment from Exonerate_coding2genome CCTGCGAAGGCCCCACTCATGCCGTGG-AATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG atgggagatcagttctttgttttttaaacccccttcccccctctctttagCCTGTGAAGGCCCCACTGATGCCTTGGCAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGTCTTAACATGACAGTGAAGgtgggtagatgcagactgctcctcagagtagtcaagtcttgtacagatgg Alignment from GeneWise CCTGCGAAGGCCCCACTCATGCCGTGG-AATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGCCTCAACATGACAGTGAAG atgggagatcagttctttgttttttaaacccccttcccccctctctttagCCTGTGAAGGCCCCACTGATGCCTTGGCAATGAGTCCAGCATCTTTCACATCCCAAGACCTGTAAGTCTTAACATGACAGTGAAGgtgggtagatgcagactgctcctcagagtagtcaagtcttgtacagatgg #### Slc3a2_ID2303_6 --> 0 - 2 Original Alignment AATGCACCCTTGTACTTGGCTGAGTGGCAGAAT-ATCACCAAGAACTTAAGTGAGGACag ccttggtaggttcatgttctgtgtgcaattttcttggactttctttgtagAATGCACCTTTGTACTTAGCAGAATGGCAGAACCATCTCCAAGAACCTT---GAAGACaggtaagtactcagcagtccatcctggctcaactccttgtgagcgctctgag Alignment from CESAR AATGCACCCTTGTACTTGGCTGAGTGGCAGAAT-ATCACCAAGAACTTAAGTGAGGACag ccttggtaggttcatgttctgtgtgcaattttcttggactttctttgtagAATGCACCTTTGTACTTAGCAGAATGGCAGAACCATCTCCAAGAACCTT---GAAGACaggtaagtactcagcagtccatcctggctcaactccttgtgagcgctctgag Alignment from Spaln_aa2Genome AATGCACCCTTGTACTTGGCTGAGTGGCAGAAT-ATCACCAAGAACTTAAGTGAGGACAG ccttggtaggttcatgttctgtgtgcaattttcttggactttctttgtagAATGCACCTTTGTACTTAGCAGAATGGCAGAACcATCTCCAAGAACCTT---GAAGACAGgtaagtactcagcagtccatcctggctcaactccttgtgagcgctctgag Alignment from Spaln_nt2Genome AATGCACCCTTGTACTTGGCTGAGTGGCAGAAT-ATCACCAAGAACTTAAGTGAGGACAG ccttggtaggttcatgttctgtgtgcaattttcttggactttctttgtagAATGCACCTTTGTACTTAGCAGAATGGCAGAACCATCTCCAAGAACCT---TGAAGACAGgtaagtactcagcagtccatcctggctcaactccttgtgagcgctctgag Alignment from Pairagon AATGCACCCTTGTACTTGGCTGAGTGGCAGAA-TATCACCAAGAACTTAAGTGAGGACAG ccttggtaggttcatgttctgtgtgcaattttcttggactttctttgtagAATGCACCTTTGTACTTAGCAGAATGGCAGAACCATCTCCAAGAACCT---TGAAGACAGgtaagtactcagcagtccatcctggctcaactccttgtgagcgctctgag Alignment from Exonerate_protein2genome AATGCACCCTTGTACTTGGCTGAGTGGCAGAAT-ATCACCAAGAACTTAAGTGAGGACAG ccttggtaggttcatgttctgtgtgcaattttcttggactttctttgtagAATGCACCTTTGTACTTAGCAGAATGGCAGAACCATCTCCAAGAACCTT---GAAGACAGgtaagtactcagcagtccatcctggctcaactccttgtgagcgctctgag Alignment from Exonerate_coding2genome ccttggtaggttcatgttctgtgtgcaattttcttggactttctttgtagaatgcacctttgtacttagcagaatggcagaaccatctccaagaaccttgaagacaggtaagtactcagcagtccatcctggctcaactccttgtgagcgctctgag Alignment from GeneWise ccttggtaggttcatgttctgtgtgcaattttcttggactttctttgtagaatgcacctttgtacttagcagaatggcagaaccatctccaagaaccttgaagacaggtaagtactcagcagtccatcctggctcaactccttgtgagcgctctgag #### Slit1_ID8222_17 --> 1 - 2 Original Alignment aCGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTT-AAGAAGCTCTCACATCTGAAGAAAat ctggatgggggggggagctaggtgttaaaacttttcaatttttttcttagtCGACTAAACAACAATGAGATCTCTATCCTAGAGGCCACTGGGTTGTTTCAGGAAGCTCTCACATCTGAAGAAAatgtattcttcccactcaccagagggtccctagctagatgcaggtaggatgg Alignment from CESAR aCGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTT-AAGAAGCTCTCACATCTGAAGAAAat ctggatgggggggggagctaggtgttaaaacttttcaatttttttcttagtCGACTAAACAACAATGAGATCTCTATCCTAGAGGCCACTGGGTTGTTTCAGGAAGCTCTCACATCTGAAGAAAatgtattcttcccactcaccagagggtccctagctagatgcaggtaggatgg Alignment from Spaln_aa2Genome ACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTT-AAGAAGCTCTCACATCTGAAGAAAAT ctggatgggggggggagctaggtgttaaaacttttcaatttttttcttagTCGACTAAACAACAATGAGATCTCTATCCTAGAGGCCACTGGGTTGTTTcAGGAAGCTCTCACATCTGAAGAAAATgtattcttcccactcaccagagggtccctagctagatgcaggtaggatgg Alignment from Spaln_nt2Genome ACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAG-AAGCTCTCACATCTGAAGAAAAT ctggatgggggggggagctaggtgttaaaacttttcaatttttttcttagTCGACTAAACAACAATGAGATCTCTATCCTAGAGGCCACTGGGTTGTTTCAGGAAGCTCTCACATCTGAAGAAAATgtattcttcccactcaccagagggtccctagctagatgcaggtaggatgg Alignment from Pairagon ACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTT-AAGAAGCTCTCACATCTGAAGAAAAT ctggatgggggggggagctaggtgttaaaacttttcaatttttttcttagTCGACTAAACAACAATGAGATCTCTATCCTAGAGGCCACTGGGTTGTTTCAGGAAGCTCTCACATCTGAAGAAAATgtattcttcccactcaccagagggtccctagctagatgcaggtaggatgg Alignment from Exonerate_protein2genome ACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTG-TTTAAGAAGCTCTCACATCTGAAGAAAAT ctggatgggggggggagctaggtgttaaaacttttcaatttttttcttagTCGACTAAACAACAATGAGATCTCTATCCTAGAGGCCACTGGGTTGTTTCAGGAAGCTCTCACATCTGAAGAAAATgtattcttcccactcaccagagggtccctagctagatgcaggtaggatgg Alignment from Exonerate_coding2genome ACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTG-TTTAAGAAGCTCTCACATCTGAAGAAAAT ctggatgggggggggagctaggtgttaaaacttttcaatttttttcttagTCGACTAAACAACAATGAGATCTCTATCCTAGAGGCCACTGGGTTGTTTCAGGAAGCTCTCACATCTGAAGAAAATgtattcttcccactcaccagagggtccctagctagatgcaggtaggatgg Alignment from GeneWise ACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTT-AAGAAGCTCTCACATCTGAAGAAAAT ctggatgggggggggagctaggtgttaaaacttttcaatttttttcttagTCGACTAAACAACAATGAGATCTCTATCCTAGAGGCCACTGGGTTGTTTCAGGAAGCTCTCACATCTGAAGAAAATgtattcttcccactcaccagagggtccctagctagatgcaggtaggatgg #### Slit1_ID8232_7 --> 1 - 2 Original Alignment gACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCAT-ATGCCCAAGCTTCGGACCtt tgcttttttgggtgtgggctaccaggcacaatcatttcttctctttccaggACACTGAATAACAATAACATCAGCACCATTCCTGTGTCAAGTTTCAATCATCATCCCTAAGCTGCGCACTttgtgagtcaccttggccatgggaaaagagtcttgttgcaagttggtttgcc Alignment from CESAR gACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCAT-ATGCCCAAGCTTCGGACCtt tgcttttttgggtgtgggctaccaggcacaatcatttcttctctttccaggACACTGAATAACAATAACATCAGCACCATTCCTGTGTCAAGTTTCAATCATCATCCCTAAGCTGCGCACTttgtgagtcaccttggccatgggaaaagagtcttgttgcaagttggtttgcc Alignment from Spaln_aa2Genome GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCAT-ATGCCCAAGCTTCGGACCTT tgcttttttgggtgtgggctaccaggcacaatcatttcttctctttccagGACACTGAATAACAATAACATCAGCACCATTCCTGTGTCAAGTTTCAATCATcATCCCTAAGCTGCGCACTTTgtgagtcaccttggccatgggaaaagagtcttgttgcaagttggtttgcc Alignment from Spaln_nt2Genome GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCAT-ATGCCCAAGCTTCGGACCTT tgcttttttgggtgtgggctaccaggcacaatcatttcttctctttccagGACACTGAATAACAATAACATCAGCACCATTCCTGTGTCAAGTTTCAATCATCATCCCTAAGCTGCGCACTTTgtgagtcaccttggccatgggaaaagagtcttgttgcaagttggtttgcc Alignment from Pairagon GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCAT-ATGCCCAAGCTTCGGACCTT tgcttttttgggtgtgggctaccaggcacaatcatttcttctctttccagGACACTGAATAACAATAACATCAGCACCATTCCTGTGTCAAGTTTCAATCATCATCCCTAAGCTGCGCACTTTgtgagtcaccttggccatgggaaaagagtcttgttgcaagttggtttgcc Alignment from Exonerate_protein2genome GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCAT-ATGCCCAAGCTTCGGACCTT tgcttttttgggtgtgggctaccaggcacaatcatttcttctctttccagGACACTGAATAACAATAACATCAGCACCATTCCTGTGTCAAGTTTCAATCATCATCCCTAAGCTGCGCACTTTgtgagtcaccttggccatgggaaaagagtcttgttgcaagttggtttgcc Alignment from Exonerate_coding2genome tgcttttttgggtgtgggctaccaggcacaatcatttcttctctttccaggacactgaataacaataacatcagcaccattcctgtgtcaagtttcaatcatcatccctaagctgcgcactttgtgagtcaccttggccatgggaaaagagtcttgttgcaagttggtttgcc Alignment from GeneWise GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCAT-ATGCCCAAGCTTCGGACCTT tgcttttttgggtgtgggctaccaggcacaatcatttcttctctttccagGACACTGAATAACAATAACATCAGCACCATTCCTGTGTCAAGTTTCAATCATCATCCCTAAGCTGCGCACTTTgtgagtcaccttggccatgggaaaagagtcttgttgcaagttggtttgcc #### Smc3_ID11318_6 --> 0 - 2 Original Alignment ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAG-GATCAGTATTTCCTAGATAAGAAGATGGTCac ttgttcaggttggccatctgggctctctagacttgttttctttttctaagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCTAAAAAGCGATCCGTATTTTCTAGATCAGAAGATGGTCacgtatgttttctttttgctcatagtgtgttacagatgttcatgaaaacatg Alignment from CESAR ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAG-GATCAGTATTTCCTAGATAAGAAGATGGTCac ttgttcaggttggccatctgggctctctagacttgttttctttttctaagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCTAAAAAGCGATCCGTATTTTCTAGATCAGAAGATGGTCacgtatgttttctttttgctcatagtgtgttacagatgttcatgaaaacatg Alignment from Spaln_aa2Genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAG-GATCAGTATTTCCTAGATAAGAAGATGGTCAC ttgttcaggttggccatctgggctctctagacttgttttctttttctaagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCTAAAAAGcGATCCGTATTTTCTAGATCAGAAGATGGTCACgtatgttttctttttgctcatagtgtgttacagatgttcatgaaaacatg Alignment from Spaln_nt2Genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAG-GATCAGTATTTCCTAGATAAGAAGATGGTCAC ttgttcaggttggccatctgggctctctagacttgttttctttttctaagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCTAAAAAGCGATCCGTATTTTCTAGATCAGAAGATGGTCACgtatgttttctttttgctcatagtgtgttacagatgttcatgaaaacatg Alignment from Pairagon ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAG-GATCAGTATTTCCTAGATAAGAAGATGGTCAC ttgttcaggttggccatctgggctctctagacttgttttctttttctaagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCTAAAAAGCGATCCGTATTTTCTAGATCAGAAGATGGTCACgtatgttttctttttgctcatagtgtgttacagatgttcatgaaaacatg Alignment from Exonerate_protein2genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAG-GATCAGTATTTCCTAGATAAGAAGATGGTCAC ttgttcaggttggccatctgggctctctagacttgttttctttttctaagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCTAAAAAGCGATCCGTATTTTCTAGATCAGAAGATGGTCACgtatgttttctttttgctcatagtgtgttacagatgttcatgaaaacatg Alignment from Exonerate_coding2genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAG-GATCAGTATTTCCTAGATAAGAAGATGGTCAC ttgttcaggttggccatctgggctctctagacttgttttctttttctaagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCTAAAAAGCGATCCGTATTTTCTAGATCAGAAGATGGTCACgtatgttttctttttgctcatagtgtgttacagatgttcatgaaaacatg Alignment from GeneWise ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAA-AAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC ttgttcaggttggccatctgggctctctagacttgttttctttttctaagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCTAAAAAGCGATCCGTATTTTCTAGATCAGAAGATGGTCACgtatgttttctttttgctcatagtgtgttacagatgttcatgaaaacatg #### Smc3_ID11337_25 --> 0 - 0 Original Alignment TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTA-ACTTTCAAACAG ggaaactcacttgctgtgtctagtaattagtgttctctgtttctccacagTTGTTCCGAAAACTGGAGCAATGCAACACAGAATTAAAGAAGTACGGCCGTGTGAACAAAAAGGCACTTGATCAGCTTGTGAACTTTTCTGAGCAGAAGGAAAAGTTGATAAAGCGGCAAGAGGAACTGGATAGC---TATAAATCAGTCATGGAACTGATGAATGTACTGGAACTTAAGAAACATGAAGCTGTTCATTTACACTTTCAAGCAAgtaagtaataagttatcctagtgtgcagagggagtgaatgtgtgtaaaaa Alignment from CESAR TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTA-ACTTTCAAACAG ggaaactcacttgctgtgtctagtaattagtgttctctgtttctccacagTTGTTCCGAAAACTGGAGCAATGCAACACAGAATTAAAGAAGTACGGCCGTGTGAACAAAAAGGCACTTGATCAGCTTGTGAACTTTTCTGAGCAGAAGGAAAAGTTGATAAAGCGGCAAGAGGAACTGGAT---AGCTATAAATCAGTCATGGAACTGATGAATGTACTGGAACTTAAGAAACATGAAGCTGTTCATTTACACTTTCAAGCAAgtaagtaataagttatcctagtgtgcagagggagtgaatgtgtgtaaaaa Alignment from Spaln_aa2Genome TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG ggaaactcacttgctgtgtctagtaattagtgttctctgtttctccacagTTGTTCCGAAAACTGGAGCAATGCAACACAGAATTAAAGAAGTACGGCCGTGTGAACAAAAAGGCACTTGATCAGCTTGTGAACTTTTCTGAGCAGAAGGAAAAGTTGATAAAGCGGCAAGAGGAACTGGAT---AGCTATAAATCAGTCATGGAACTGATGAATGTACTGGAACTTAAGAAACATGAAGCTGTTCATTTACACTTT---CAAgcaagtaagtaataagttatcctagtgtgcagagggagtgaatgtgtgtaaaaa Alignment from Spaln_nt2Genome TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTA-ACTTTCAAACAG ggaaactcacttgctgtgtctagtaattagtgttctctgtttctccacagTTGTTCCGAAAACTGGAGCAATGCAACACAGAATTAAAGAAGTACGGCCGTGTGAACAAAAAGGCACTTGATCAGCTTGTGAACTTTTCTGAGCAGAAGGAAAAGTTGATAAAGCGGCAAGAGGAACTGGATAG---CTATAAATCAGTCATGGAACTGATGAATGTACTGGAACTTAAGAAACATGAAGCTGTTCATTTACACTTTCAAGCAAgtaagtaataagttatcctagtgtgcagagggagtgaatgtgtgtaaaaa Alignment from Pairagon TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTA-ACTTTCAAACAG ggaaactcacttgctgtgtctagtaattagtgttctctgtttctccacagTTGTTCCGAAAACTGGAGCAATGCAACACAGAATTAAAGAAGTACGGCCGTGTGAACAAAAAGGCACTTGATCAGCTTGTGAACTTTTCTGAGCAGAAGGAAAAGTTGATAAAGCGGCAAGAGGAACTGGATA---GCTATAAATCAGTCATGGAACTGATGAATGTACTGGAACTTAAGAAACATGAAGCTGTTCATTTACACTTTCAAGCAAgtaagtaataagttatcctagtgtgcagagggagtgaatgtgtgtaaaaa Alignment from Exonerate_protein2genome TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTA-ACTTTCAAACAG ggaaactcacttgctgtgtctagtaattagtgttctctgtttctccacagTTGTTCCGAAAACTGGAGCAATGCAACACAGAATTAAAGAAGTACGGCCGTGTGAACAAAAAGGCACTTGATCAGCTTGTGAACTTTTCTGAGCAGAAGGAAAAGTTGATAAAGCGGCAAGAGGAACTGGAT---AGCTATAAATCAGTCATGGAACTGATGAATGTACTGGAACTTAAGAAACATGAAGCTGTTCATTTACACTTTCAAGCAAgtaagtaataagttatcctagtgtgcagagggagtgaatgtgtgtaaaaa Alignment from Exonerate_coding2genome TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTA-ACTTTCAAACAG ggaaactcacttgctgtgtctagtaattagtgttctctgtttctccacagTTGTTCCGAAAACTGGAGCAATGCAACACAGAATTAAAGAAGTACGGCCGTGTGAACAAAAAGGCACTTGATCAGCTTGTGAACTTTTCTGAGCAGAAGGAAAAGTTGATAAAGCGGCAAGAGGAACTGGAT---AGCTATAAATCAGTCATGGAACTGATGAATGTACTGGAACTTAAGAAACATGAAGCTGTTCATTTACACTTTCAAGCAAgtaagtaataagttatcctagtgtgcagagggagtgaatgtgtgtaaaaa Alignment from GeneWise TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTACAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAA-------- ggaaactcacttgctgtgtctagtaattagtgttctctgtttctccacagTTGTTCCGAAAACTGGAGCAATGCAACACAGAATTAAAGAAGTACGGCCGTGTGAACAAAAAGGCACTTGATCAGCTTGTGAACTTTTCTGAGCAGAAGGAAAAGTTGATAAAGCGGCAAGAGGAACTGGAT---AGCTATAAATCAGTCATGGAACTGATGAATGTACTGGAACTTAAGAAACATGAAGCTGTTCATTTACACTTTCAAGCAAGTAAgtaataagttatcctagtgtgcagagggagtgaatgtgtgtaaaaa #### Smc3_ID11338_26 --> 0 - 0 Original Alignment GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGG-GGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG cttcaagcatagaagcatgccacctaagtatgttttctcaccctcctcagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTGGTGGCAAAGCAACTTTGGTGATGAAGAAAGGTGATGTGGAGGGTAGTGAGTCTCAGGACAAAGGAGAAGGGAGTGGTGAGAGTGAGCGGCGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaattgactttttatgcttagtttctgctacacctttacgattcaaaac Alignment from CESAR GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGG-GGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG cttcaagcatagaagcatgccacctaagtatgttttctcaccctcctcagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTGGTGGCAAAGCAACTTTGGTGATGAAGAAAGGTGATGTGGAGGGTAGTGAGTCTCAGGACAAAGGAGAAGGGAGTGGTGAGAGTGAGCGGCGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaattgactttttatgcttagtttctgctacacctttacgattcaaaac Alignment from Spaln_aa2Genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGG-GGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG cttcaagcatagaagcatgccacctaagtatgttttctcaccctcctcagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTGGTGGCAAAGCAACTTTGGTGATGAAGAAAGGTGATGTGGAGGGTAGTGAGTCTCAGGACAAAGGAGAAGGGAGTGGTGAGAGTGAGCGGcGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaattgactttttatgcttagtttctgctacacctttacgattcaaaac Alignment from Spaln_nt2Genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGG-GGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG cttcaagcatagaagcatgccacctaagtatgttttctcaccctcctcagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTGGTGGCAAAGCAACTTTGGTGATGAAGAAAGGTGATGTGGAGGGTAGTGAGTCTCAGGACAAAGGAGAAGGGAGTGGTGAGAGTGAGCGGCGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaattgactttttatgcttagtttctgctacacctttacgattcaaaac Alignment from Pairagon GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGG-GGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG cttcaagcatagaagcatgccacctaagtatgttttctcaccctcctcagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTGGTGGCAAAGCAACTTTGGTGATGAAGAAAGGTGATGTGGAGGGTAGTGAGTCTCAGGACAAAGGAGAAGGGAGTGGTGAGAGTGAGCGGCGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaattgactttttatgcttagtttctgctacacctttacgattcaaaac Alignment from Exonerate_protein2genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGG-GGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG cttcaagcatagaagcatgccacctaagtatgttttctcaccctcctcagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTGGTGGCAAAGCAACTTTGGTGATGAAGAAAGGTGATGTGGAGGGTAGTGAGTCTCAGGACAAAGGAGAAGGGAGTGGTGAGAGTGAGCGGCGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaattgactttttatgcttagtttctgctacacctttacgattcaaaac Alignment from Exonerate_coding2genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGG-GGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG cttcaagcatagaagcatgccacctaagtatgttttctcaccctcctcagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTGGTGGCAAAGCAACTTTGGTGATGAAGAAAGGTGATGTGGAGGGTAGTGAGTCTCAGGACAAAGGAGAAGGGAGTGGTGAGAGTGAGCGGCGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaattgactttttatgcttagtttctgctacacctttacgattcaaaac Alignment from GeneWise GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCCAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAG-CGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG cttcaagcatagaagcatgccacctaagtatgttttctcaccctcctcagGTATCTAAGAACTTCAGTGAAGTTTTCCAGAAATTGGTACCTGGTGGCAAAGCAACTTTGGTGATGAAGAAAGGTGATGTGGAGGGTAGTGAGTCTCAGGACAAAGGAGAAGGGAGTGGTGAGAGTGAGCGGCGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaattgactttttatgcttagtttctgctacacctttacgattcaaaac #### Smc5_ID5110_21 --> 0 - 0 Original Alignment GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAG-TTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG ttttattttatcccttgataaattttaactgcttccatacccctacccagGTGGTTGAGAAGTATTCAAAAAGAGAAGTAGAGATACAGCAACTTGACTGAAGAACTGCAAGGTAAAAAAGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtaagtcatagtctgattcatttgtcatgattgtgatgtgcttacaaact Alignment from CESAR GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAG-TTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG ttttattttatcccttgataaattttaactgcttccatacccctacccagGTGGTTGAGAAGTATTCAAAAAGAGAAGTAGAGATACAGCAACTTGACTGAAGAACTGCAAGGTAAAAAAGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtaagtcatagtctgattcatttgtcatgattgtgatgtgcttacaaact Alignment from Spaln_aa2Genome GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAG-TTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG ttttattttatcccttgataaattttaactgcttccatacccctacccagGTGGTTGAGAAGTATTCAAAAAGAGAAGTAGAGATACAGCAAcTTGACTGAAGAACTGCAAGGTAAAAAAGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtaagtcatagtctgattcatttgtcatgattgtgatgtgcttacaaact Alignment from Spaln_nt2Genome GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAG-TTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG ttttattttatcccttgataaattttaactgcttccatacccctacccagGTGGTTGAGAAGTATTCAAAAAGAGAAGTAGAGATACAGCAACTTGACTGAAGAACTGCAAGGTAAAAAAGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtaagtcatagtctgattcatttgtcatgattgtgatgtgcttacaaact Alignment from Pairagon GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAG-TTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG ttttattttatcccttgataaattttaactgcttccatacccctacccagGTGGTTGAGAAGTATTCAAAAAGAGAAGTAGAGATACAGCAACTTGACTGAAGAACTGCAAGGTAAAAAAGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtaagtcatagtctgattcatttgtcatgattgtgatgtgcttacaaact Alignment from Exonerate_protein2genome GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAG-TTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG ttttattttatcccttgataaattttaactgcttccatacccctacccagGTGGTTGAGAAGTATTCAAAAAGAGAAGTAGAGATACAGCAACTTGACTGAAGAACTGCAAGGTAAAAAAGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtaagtcatagtctgattcatttgtcatgattgtgatgtgcttacaaact Alignment from Exonerate_coding2genome GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAG-TTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG ttttattttatcccttgataaattttaactgcttccatacccctacccagGTGGTTGAGAAGTATTCAAAAAGAGAAGTAGAGATACAGCAACTTGACTGAAGAACTGCAAGGTAAAAAAGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtaagtcatagtctgattcatttgtcatgattgtgatgtgcttacaaact Alignment from GeneWise GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATACAGCAG-TTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG ttttattttatcccttgataaattttaactgcttccatacccctacccagGTGGTTGAGAAGTATTCAAAAAGAGAAGTAGAGATACAGCAACTTGACTGAAGAACTGCAAGGTAAAAAAGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtaagtcatagtctgattcatttgtcatgattgtgatgtgcttacaaact #### Snx15_ID1469_3 --> 0 - 1 Original Alignment GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCC-TTCCCCCGTGCCCAGGTGTTTg ggtgtcttacccagctcacactcaggtcctgactgacgtttctccaccagGTAGTAGTCTGGAAGCAGTACAGCGACTTCCGTAAGCTTCATGGGGACTTAGCCTATACTCACCGGAATCTCTTTCGGCATCTAGAGGAGTTCCCAGCCCTTCCCCCAAGCCCAGGTGTTTggtaagttttggactctgtacctctccagctcagggcatcaggaatttggc Alignment from CESAR GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCC-TTCCCCCGTGCCCAGGTGTTTg ggtgtcttacccagctcacactcaggtcctgactgacgtttctccaccagGTAGTAGTCTGGAAGCAGTACAGCGACTTCCGTAAGCTTCATGGGGACTTAGCCTATACTCACCGGAATCTCTTTCGGCATCTAGAGGAGTTCCCAGCCCTTCCCCCAAGCCCAGGTGTTTggtaagttttggactctgtacctctccagctcagggcatcaggaatttggc Alignment from Spaln_aa2Genome GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCC-TTCCCCCGTGCCCAGGTGTTTG ggtgtcttacccagctcacactcaggtcctgactgacgtttctccaccagGTAGTAGTCTGGAAGCAGTACAGCGACTTCCGTAAGCTTCATGGGGACTTAGCCTATACTCACCGGAATCTCTTTCGGCATCTAGAGGAGTTCCCAGCCcTTCCCCCAAGCCCAGGTGTTTGgtaagttttggactctgtacctctccagctcagggcatcaggaatttggc Alignment from Spaln_nt2Genome GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCC-TTCCCCCGTGCCCAGGTGTTTG ggtgtcttacccagctcacactcaggtcctgactgacgtttctccaccagGTAGTAGTCTGGAAGCAGTACAGCGACTTCCGTAAGCTTCATGGGGACTTAGCCTATACTCACCGGAATCTCTTTCGGCATCTAGAGGAGTTCCCAGCCCTTCCCCCAAGCCCAGGTGTTTGgtaagttttggactctgtacctctccagctcagggcatcaggaatttggc Alignment from Pairagon GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGG-CCTTCCCCCGTGCCCAGGTGTTTG ggtgtcttacccagctcacactcaggtcctgactgacgtttctccaccagGTAGTAGTCTGGAAGCAGTACAGCGACTTCCGTAAGCTTCATGGGGACTTAGCCTATACTCACCGGAATCTCTTTCGGCATCTAGAGGAGTTCCCAGCCCTTCCCCCAAGCCCAGGTGTTTGgtaagttttggactctgtacctctccagctcagggcatcaggaatttggc Alignment from Exonerate_protein2genome GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCC-TTCCCCCGTGCCCAGGTGTTTG ggtgtcttacccagctcacactcaggtcctgactgacgtttctccaccagGTAGTAGTCTGGAAGCAGTACAGCGACTTCCGTAAGCTTCATGGGGACTTAGCCTATACTCACCGGAATCTCTTTCGGCATCTAGAGGAGTTCCCAGCCCTTCCCCCAAGCCCAGGTGTTTGgtaagttttggactctgtacctctccagctcagggcatcaggaatttggc Alignment from Exonerate_coding2genome GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCC-TTCCCCCGTGCCCAGGTGTTTG ggtgtcttacccagctcacactcaggtcctgactgacgtttctccaccagGTAGTAGTCTGGAAGCAGTACAGCGACTTCCGTAAGCTTCATGGGGACTTAGCCTATACTCACCGGAATCTCTTTCGGCATCTAGAGGAGTTCCCAGCCCTTCCCCCAAGCCCAGGTGTTTGgtaagttttggactctgtacctctccagctcagggcatcaggaatttggc Alignment from GeneWise GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAG- ggtgtcttacccagctcacactcaggtcctgactgacgtttctccaccagGTAGTAGTCTGGAAGCAGTACAGCGACTTCCGTAAGCTTCATGGGGACTTAGCCTATACTCACCGGAATCTCTTTCGGCATCTAGAGGAGTTCCCAGCCCTTCCCCCAAGCCCAGgtgtttggtaagttttggactctgtacctctccagctcagggcatcaggaatttggc #### Sptbn2_ID615_10 --> 0 - 0 Original Alignment GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGAC-CGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacctgttctgcccctacctccacttgtaaacttactttgcattttagGCCTGGGAGCGGTTGGAGAAAGCTGAACATGAGAGAGAGCTAGCATTGCGCACGGAGCTGATTCGCCAGAAAAAACTAGAGCAACTAGCTGCTCGATTTGACCCATAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAACGTCTTGTTTCTCAAgtaagctttatctttaagacacaggtttcaggcatgggctcatggttcag Alignment from CESAR GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGAC-CGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacctgttctgcccctacctccacttgtaaacttactttgcattttagGCCTGGGAGCGGTTGGAGAAAGCTGAACATGAGAGAGAGCTAGCATTGCGCACGGAGCTGATTCGCCAGAAAAAACTAGAGCAACTAGCTGCTCGATTTGACCCATAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAACGTCTTGTTTCTCAAgtaagctttatctttaagacacaggtttcaggcatgggctcatggttcag Alignment from Spaln_aa2Genome GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGAC-CGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacctgttctgcccctacctccacttgtaaacttactttgcattttagGCCTGGGAGCGGTTGGAGAAAGCTGAACATGAGAGAGAGCTAGCATTGCGCACGGAGCTGATTCGCCAGAAAAAACTAGAGCAACTAGCTGCTCGATTTGACcCATAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAACGTCTTGTTTCTCAAgtaagctttatctttaagacacaggtttcaggcatgggctcatggttcag Alignment from Spaln_nt2Genome GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGACCGC-AAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacctgttctgcccctacctccacttgtaaacttactttgcattttagGCCTGGGAGCGGTTGGAGAAAGCTGAACATGAGAGAGAGCTAGCATTGCGCACGGAGCTGATTCGCCAGAAAAAACTAGAGCAACTAGCTGCTCGATTTGACCCATAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAACGTCTTGTTTCTCAAgtaagctttatctttaagacacaggtttcaggcatgggctcatggttcag Alignment from Pairagon GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGA-CCGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacctgttctgcccctacctccacttgtaaacttactttgcattttagGCCTGGGAGCGGTTGGAGAAAGCTGAACATGAGAGAGAGCTAGCATTGCGCACGGAGCTGATTCGCCAGAAAAAACTAGAGCAACTAGCTGCTCGATTTGACCCATAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAACGTCTTGTTTCTCAAgtaagctttatctttaagacacaggtttcaggcatgggctcatggttcag Alignment from Exonerate_protein2genome GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGAC-CGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacctgttctgcccctacctccacttgtaaacttactttgcattttagGCCTGGGAGCGGTTGGAGAAAGCTGAACATGAGAGAGAGCTAGCATTGCGCACGGAGCTGATTCGCCAGAAAAAACTAGAGCAACTAGCTGCTCGATTTGACCCATAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAACGTCTTGTTTCTCAAgtaagctttatctttaagacacaggtttcaggcatgggctcatggttcag Alignment from Exonerate_coding2genome GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGAC-CGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacctgttctgcccctacctccacttgtaaacttactttgcattttagGCCTGGGAGCGGTTGGAGAAAGCTGAACATGAGAGAGAGCTAGCATTGCGCACGGAGCTGATTCGCCAGAAAAAACTAGAGCAACTAGCTGCTCGATTTGACCCATAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAACGTCTTGTTTCTCAAgtaagctttatctttaagacacaggtttcaggcatgggctcatggttcag Alignment from GeneWise GCCTGGGAGCGGCTGGAGAAAGCCGAACATGAGCGAGAGCTAGCGCTGCGCACAGAGCTGATCCGCCAGGAGAAGCTGGAGCAACTGGCTGCTCGCTTCGAC-CGCAAGGCTGCCATGCGGGAGACCTGGCTCAGTGAGAACCAGCGACTTGTGTCCCAG ctaacctgttctgcccctacctccacttgtaaacttactttgcattttagGCCTGGGAGCGGTTGGAGAAAGCTGAACATGAGAGAGAGCTAGCATTGCGCACGGAGCTGATTCGCCAGAAAAAACTAGAGCAACTAGCTGCTCGATTTGACCCATAAGGCTGCCATGCGGAAGACCTGGCTCAGAGAGAACCAACGTCTTGTTTCTCAAgtaagctttatctttaagacacaggtttcaggcatgggctcatggttcag #### Sptbn2_ID622_17 --> 1 - 0 Original Alignment gCACAGAAAGAATCAGGAGGCGGTGCAG-CAGCTTTTAGGACGCCTTCGGGACAACCGAGAG---CAGCAGCACTTCTTGCAAGACTGTCAGGAG atagcttcggggaagtcaagggattgctatattgcctgtctattttataggCACAGGAAGAATCAGGAAGCAGTACAACCAGCTTTTA---CGCCCTCAGGACAACCGCAAGGAGCGGCAGCACTTCATACAGGACTGTCAGGAGgtgacataaccctacagttattcatctctcatacccatatagcctgtcat Alignment from CESAR gCACAGAAAGAATCAGGAGGCGGTGCAG-CAGCTTTTAGGACGCCTTCGGGACAACCGA---GAGCAGCAGCACTTCTTGCAAGACTGTCAGGAG atagcttcggggaagtcaagggattgctatattgcctgtctattttataggCACAGGAAGAATCAGGAAGCAGTACAACCAGCTTTTA---CGCCCTCAGGACAACCGCAAGGAGCGGCAGCACTTCATACAGGACTGTCAGGAGgtgacataaccctacagttattcatctctcatacccatatagcctgtcat Alignment from Spaln_aa2Genome GCACAGAAAGAATCAGGAGGCGGTGCAG-CAGCTTTTAGGACGCCTTCGGGACAACCGAGAGCAGCAGCACTTCTTGCAAGACTGTCAGGAG atagcttcggggaagtcaagggattgctatattgcctgtctattttatagGCACAGGAAGAATCAGGAAGCAGTACAAcCAGCTTTTACGCCCTCAGGACAACCGCAAGGAGCGGCAGCACTTCATACAGGACTGTCAGGAGgtgacataaccctacagttattcatctctcatacccatatagcctgtcat Alignment from Spaln_nt2Genome GCACAGAAAGAATCAGGAGGCGGTGCAGC-AGCTTTTAGGACGCCTTCGGGACAACCGA---GAGCAGCAGCACTTCTTGCAAGACTGTCAGGAG atagcttcggggaagtcaagggattgctatattgcctgtctattttatagGCACAGGAAGAATCAGGAAGCAGTACAACCAGCTTTT---ACGCCCTCAGGACAACCGCAAGGAGCGGCAGCACTTCATACAGGACTGTCAGGAGgtgacataaccctacagttattcatctctcatacccatatagcctgtcat Alignment from Pairagon GCACAGAAAGAATCAGGAGGCGGTGCAG-CAGCTTTTAGGACGCCTTCGGGACAACCG---AGAGCAGCAGCACTTCTTGCAAGACTGTCAGGAG atagcttcggggaagtcaagggattgctatattgcctgtctattttatagGCACAGGAAGAATCAGGAAGCAGTACAACCAGCTTTT---ACGCCCTCAGGACAACCGCAAGGAGCGGCAGCACTTCATACAGGACTGTCAGGAGgtgacataaccctacagttattcatctctcatacccatatagcctgtcat Alignment from Exonerate_protein2genome GCACAGAAAGAATCAGGAGGCGGTGCAG-CAGCTTTTAGGACGCCTTCGGGACAACCGAGAGCAGCAGCACTTCTTGCAAGACTGTCAGGAG atagcttcggggaagtcaagggattgctatattgcctgtctattttatagGCACAGGAAGAATCAGGAAGCAGTACAACCAGCTTTTACGCCCTCAGGACAACCGCAAGGAGCGGCAGCACTTCATACAGGACTGTCAGGAGgtgacataaccctacagttattcatctctcatacccatatagcctgtcat Alignment from Exonerate_coding2genome GCACAGAAAGAATCAGGAGGCGGTGCAG-CAGCTTTTAGGACGCCTTCGGGACAACCGAGAGCAGCAGCACTTCTTGCAAGACTGTCAGGAG atagcttcggggaagtcaagggattgctatattgcctgtctattttatagGCACAGGAAGAATCAGGAAGCAGTACAACCAGCTTTTACGCCCTCAGGACAACCGCAAGGAGCGGCAGCACTTCATACAGGACTGTCAGGAGgtgacataaccctacagttattcatctctcatacccatatagcctgtcat Alignment from GeneWise GCACAGAAAGAATCAGGAGGCGGTGCAGCAGCTTTTAGGACGCCTTCGGGACAACCGA---GAGCAGCAGCACTTCTTGCAAGACTGTCAGGAG atagcttcggggaagtcaagggattgctatattgcctgtctattttatagGCACAGGAAGAATCAGGAAGCAGTACAACCAG--CTTTTACGCCCTCAGGACAACCGCAAGGAGCGGCAGCACTTCATACAGGACTGTCAGGAGgtgacataaccctacagttattcatctctcatacccatatagcctgtcat #### Sptbn2_ID628_23 --> 0 - 2 Original Alignment GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCC-CTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGag tcttactcccaaagacctgaagtttagagatgctctcccaccccacccagGATGAGCTGAGTGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAACAAGCCCCTTGCTGATTACGCCCAAACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGaggtccgcgcatgtatgtgacacatagcaagttgtggtttttctttaaatta Alignment from CESAR GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCC-CTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGag tcttactcccaaagacctgaagtttagagatgctctcccaccccacccagGATGAGCTGAGTGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAACAAGCCCCTTGCTGATTACGCCCAAACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGaggtccgcgcatgtatgtgacacatagcaagtgttttgttttgtttttttaa Alignment from Spaln_aa2Genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCC-CTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG tcttactcccaaagacctgaagtttagagatgctctcccaccccacccagGATGAGCTGAGTGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAACAAGCCcCTTGCTGATTACGCCCAAACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtccgcgcatgtatgtgacacatagcaagttgtggtttttctttaaatta Alignment from Spaln_nt2Genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAG-CCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG tcttactcccaaagacctgaagtttagagatgctctcccaccccacccagGATGAGCTGAGTGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAACAAGCCCCTTGCTGATTACGCCCAAACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtccgcgcatgtatgtgacacatagcaagttgtggtttttctttaaatta Alignment from Pairagon GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAG-CCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAG---------------------------------------------------A tcttactcccaaagacctgaagtttagagatgctctcccaccccacccagGATGAGCTGAGTGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAACAAGCCCCTTGCTGATTACGCCCAAACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGGTCCGCGCATGTATGTGACACATAGCAAGTTGTGGTTTTTCTTTAAATTA Alignment from Exonerate_protein2genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCC-CTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG tcttactcccaaagacctgaagtttagagatgctctcccaccccacccagGATGAGCTGAGTGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAACAAGCCCCTTGCTGATTACGCCCAAACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtccgcgcatgtatgtgacacatagcaagttgtggtttttctttaaatta Alignment from Exonerate_coding2genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCC-CTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG tcttactcccaaagacctgaagtttagagatgctctcccaccccacccagGATGAGCTGAGTGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAACAAGCCCCTTGCTGATTACGCCCAAACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtccgcgcatgtatgtgacacatagcaagttgtggtttttctttaaatta Alignment from GeneWise GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAA-GCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG tcttactcccaaagacctgaagtttagagatgctctcccaccccacccagGATGAGCTGAGTGCCCAGGCAGAAGTGAGGAAGCATCAGGTATTGGAACAAGCCCCTTGCTGATTACGCCCAAACCATTAAACAACTATCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtccgcgcatgtatgtgacacatagcaagttgtggtttttctttaaatta #### Sptbn2_ID632_27 --> 1 - 0 Original Alignment gGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGAC-AGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggcccacctgtaactaatattttgtattttgttagaGATGTGTCCTCTGCAGATTTAGTCATCAAGAATCAGCAAGGAATCAAGGCAGAGATAGAGGCTAGAGCAGACCAGGTTTTCTTCCTGCATTGACATGGGCCAGGAGCTGCTGGCCAGGAGCCATTATGCTGCTCAGGAAgtaggtaagatctagagaaagtccagctagatgcacccaaccggacccac Alignment from CESAR gGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGAC-AGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggcccacctgtaactaatattttgtattttgttagaGATGTGTCCTCTGCAGATTTAGTCATCAAGAATCAGCAAGGAATCAAGGCAGAGATAGAGGCTAGAGCAGACCAGGTTTTCTTCCTGCATTGACATGGGCCAGGAGCTGCTGGCCAGGAGCCATTATGCTGCTCAGGAAgtaggtaagatctagagaaagtccagctagatgcacccaaccggacccac Alignment from Spaln_aa2Genome GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGAC-AGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggcccacctgtaactaatattttgtattttgttagAGATGTGTCCTCTGCAGATTTAGTCATCAAGAATCAGCAAGGAATCAAGGCAGAGATAGAGGCTAGAGCAGACcAGGTTTTCTTCCTGCATTGACATGGGCCAGGAGCTGCTGGCCAGGAGCCATTATGCTGCTCAGGAAgtaggtaagatctagagaaagtccagctagatgcacccaaccggacccac Alignment from Spaln_nt2Genome GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGA-CAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggcccacctgtaactaatattttgtattttgttagAGATGTGTCCTCTGCAGATTTAGTCATCAAGAATCAGCAAGGAATCAAGGCAGAGATAGAGGCTAGAGCAGACCAGGTTTTCTTCCTGCATTGACATGGGCCAGGAGCTGCTGGCCAGGAGCCATTATGCTGCTCAGGAAgtaggtaagatctagagaaagtccagctagatgcacccaaccggacccac Alignment from Pairagon GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGA-CAGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggcccacctgtaactaatattttgtattttgttagAGATGTGTCCTCTGCAGATTTAGTCATCAAGAATCAGCAAGGAATCAAGGCAGAGATAGAGGCTAGAGCAGACCAGGTTTTCTTCCTGCATTGACATGGGCCAGGAGCTGCTGGCCAGGAGCCATTATGCTGCTCAGGAAgtaggtaagatctagagaaagtccagctagatgcacccaaccggacccac Alignment from Exonerate_protein2genome GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGAC-AGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggcccacctgtaactaatattttgtattttgttagAGATGTGTCCTCTGCAGATTTAGTCATCAAGAATCAGCAAGGAATCAAGGCAGAGATAGAGGCTAGAGCAGACCAGGTTTTCTTCCTGCATTGACATGGGCCAGGAGCTGCTGGCCAGGAGCCATTATGCTGCTCAGGAAgtaggtaagatctagagaaagtccagctagatgcacccaaccggacccac Alignment from Exonerate_coding2genome GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGAC-AGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggcccacctgtaactaatattttgtattttgttagAGATGTGTCCTCTGCAGATTTAGTCATCAAGAATCAGCAAGGAATCAAGGCAGAGATAGAGGCTAGAGCAGACCAGGTTTTCTTCCTGCATTGACATGGGCCAGGAGCTGCTGGCCAGGAGCCATTATGCTGCTCAGGAAgtaggtaagatctagagaaagtccagctagatgcacccaaccggacccac Alignment from GeneWise GGATGTGTCCTCTGCAGATTTAGTCATCAAAAACCAACAAGGAATCAAAGCAGAGATAGAGGCCAGAGCAGAC-AGGTTCTCCTCCTGCATTGACATGGGGCAGGAGCTGCTGGCCCGGAGCCACTATGCTGCTGAGGAG gctgtggtggggctgggcccacctgtaactaatattttgtattttgttagAGATGTGTCCTCTGCAGATTTAGTCATCAAGAATCAGCAAGGAATCAAGGCAGAGATAGAGGCTAGAGCAGACCAGGTTTTCTTCCTGCATTGACATGGGCCAGGAGCTGCTGGCCAGGAGCCATTATGCTGCTCAGGAAgtaggtaagatctagagaaagtccagctagatgcacccaaccggacccac #### Sptbn2_ID633_28 --> 0 - 1 Original Alignment ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAG-GAGAAGATGGACTGGCTACAGCTTg gtcatcatggtcaagtcccaatactcatggacctggctttgtgcccacagATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACCGCTGACAAGTGGCAGCGAGAAGATGGACTGGTTACAACTTggtaaattatttagcaatatcacaggaggtaggggttatgggagggtgtac Alignment from CESAR ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAG-GAGAAGATGGACTGGCTACAGCTTg gtcatcatggtcaagtcccaatactcatggacctggctttgtgcccacagATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACCGCTGACAAGTGGCAGCGAGAAGATGGACTGGTTACAACTTggtaaattatttagcaatatcacaggaggtaggggttatgggagggtgtac Alignment from Spaln_aa2Genome ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAG-GAGAAGATGGACTGGCTACAGCTTG gtcatcatggtcaagtcccaatactcatggacctggctttgtgcccacagATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACCGCTGACAAGTGGCAGcGAGAAGATGGACTGGTTACAACTTGgtaaattatttagcaatatcacaggaggtaggggttatgggagggtgtac Alignment from Spaln_nt2Genome ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAG-GAGAAGATGGACTGGCTACAGCTTG gtcatcatggtcaagtcccaatactcatggacctggctttgtgcccacagATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACCGCTGACAAGTGGCAGCGAGAAGATGGACTGGTTACAACTTGgtaaattatttagcaatatcacaggaggtaggggttatgggagggtgtac Alignment from Pairagon ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAG-GAGAAGATGGACTGGCTACAGCTTG gtcatcatggtcaagtcccaatactcatggacctggctttgtgcccacagATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACCGCTGACAAGTGGCAGCGAGAAGATGGACTGGTTACAACTTGgtaaattatttagcaatatcacaggaggtaggggttatgggagggtgtac Alignment from Exonerate_protein2genome ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAG-GAGAAGATGGACTGGCTACAGCTTG gtcatcatggtcaagtcccaatactcatggacctggctttgtgcccacagATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACCGCTGACAAGTGGCAGCGAGAAGATGGACTGGTTACAACTTGgtaaattatttagcaatatcacaggaggtaggggttatgggagggtgtac Alignment from Exonerate_coding2genome ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAG-GAGAAGATGGACTGGCTACAGCTTG gtcatcatggtcaagtcccaatactcatggacctggctttgtgcccacagATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACCGCTGACAAGTGGCAGCGAGAAGATGGACTGGTTACAACTTGgtaaattatttagcaatatcacaggaggtaggggttatgggagggtgtac Alignment from GeneWise ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAG-GAGAAGATGGACTGGCTACAGCTTG gtcatcatggtcaagtcccaatactcatggacctggctttgtgcccacagATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACCGCTGACAAGTGGCAGCGAGAAGATGGACTGGTTACAACTTGgtaaattatttagcaatatcacaggaggtaggggttatgggagggtgtac #### Sptbn2_ID638_33 --> 0 - 2 Original Alignment GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTG---CCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATG-GAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACag aagaaggatacaattgatgtcattgtttctgctttgctgtttgtccccagGGCTCTGGTATGGGAGATGAGTCCCGTGGGCCCCAGGGTGAGAGACAGACCCTGCTGCCACGTGGCCCTGCTCCTTCTCCTATGCCACAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGAGGTCCAGAGCTCTCTGCACAGGAACAGATGCGAAGGGATGCTGTGCCGTGAACAAGACATGGAAGCGTTCAACAAGAAAGCTGCCAACaggtgagcatcatgcctactgatgcctgtgcctctctgactctggcctctga Alignment from CESAR GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACC---CTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATG-GAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACag aagaaggatacaattgatgtcattgtttctgctttgctgtttgtccccagGGCTCTGGTATGGGAGATGAGTCCCGTGGGCCCCAGGGTGAGAGACAGACCCTGCTGCCACGTGGCCCTGCTCCTTCTCCTATGCCACAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGAGGTCCAGAGCTCTCTGCACAGGAACAGATGCGAAGGGATGCTGTGCCGTGAACAAGACATGGAAGCGTTCAACAAGAAAGCTGCCAACaggtgagcatcatgcctactgatgcctgtgcctctctgactctggcctctga Alignment from Spaln_aa2Genome GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACC---CTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATG-GAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG aagaaggatacaattgatgtcattgtttctgctttgctgtttgtccccagGGCTCTGGTATGGGAGATGAGTCCCGTGGGCCCCAGGGTGAGAGACAGACCCTGCTGCCACGTGGCCCTGCTCCTTCTCCTATGCCACAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGAGGTCCAGAGCTCTCTGCACAGGAACAGATGcGAAGGGATGCTGTGCCGTGAACAAGACATGGAAGCGTTCAACAAGAAAGCTGCCAACAGgtgagcatcatgcctactgatgcctgtgcctctctgactctggcctctga Alignment from Spaln_nt2Genome GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGC---CCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATG-GAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG aagaaggatacaattgatgtcattgtttctgctttgctgtttgtccccagGGCTCTGGTATGGGAGATGAGTCCCGTGGGCCCCAGGGTGAGAGACAGACCCTGCTGCCACGTGGCCCTGCTCCTTCTCCTATGCCACAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGAGGTCCAGAGCTCTCTGCACAGGAACAGATGCGAAGGGATGCTGTGCCGTGAACAAGACATGGAAGCGTTCAACAAGAAAGCTGCCAACAGgtgagcatcatgcctactgatgcctgtgcctctctgactctggcctctga Alignment from Pairagon GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACC---CTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATG-GAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG aagaaggatacaattgatgtcattgtttctgctttgctgtttgtccccagGGCTCTGGTATGGGAGATGAGTCCCGTGGGCCCCAGGGTGAGAGACAGACCCTGCTGCCACGTGGCCCTGCTCCTTCTCCTATGCCACAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGAGGTCCAGAGCTCTCTGCACAGGAACAGATGCGAAGGGATGCTGTGCCGTGAACAAGACATGGAAGCGTTCAACAAGAAAGCTGCCAACAGgtgagcatcatgcctactgatgcctgtgcctctctgactctggcctctga Alignment from Exonerate_protein2genome GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACC---CTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATG-GAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG aagaaggatacaattgatgtcattgtttctgctttgctgtttgtccccagGGCTCTGGTATGGGAGATGAGTCCCGTGGGCCCCAGGGTGAGAGACAGACCCTGCTGCCACGTGGCCCTGCTCCTTCTCCTATGCCACAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGAGGTCCAGAGCTCTCTGCACAGGAACAGATGCGAAGGGATGCTGTGCCGTGAACAAGACATGGAAGCGTTCAACAAGAAAGCTGCCAACAGgtgagcatcatgcctactgatgcctgtgcctctctgactctggcctctga Alignment from Exonerate_coding2genome GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACC---CTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATG-GAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG aagaaggatacaattgatgtcattgtttctgctttgctgtttgtccccagGGCTCTGGTATGGGAGATGAGTCCCGTGGGCCCCAGGGTGAGAGACAGACCCTGCTGCCACGTGGCCCTGCTCCTTCTCCTATGCCACAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGAGGTCCAGAGCTCTCTGCACAGGAACAGATGCGAAGGGATGCTGTGCCGTGAACAAGACATGGAAGCGTTCAACAAGAAAGCTGCCAACAGgtgagcatcatgcctactgatgcctgtgcctctctgactctggcctctga Alignment from GeneWise GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTG---CCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATG-GAAGGGATGCTGTGCCGCAAACAAGAGATGGAAGCCTTCAACAAGAAAGCTGCCAACAG aagaaggatacaattgatgtcattgtttctgctttgctgtttgtccccagGGCTCTGGTATGGGAGATGAGTCCCGTGGGCCCCAGGGTGAGAGACAGACCCTGCTGCCACGTGGCCCTGCTCCTTCTCCTATGCCACAAAGCAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGAGGTCCAGAGCTCTCTGCACAGGAACAGATGCGAAGGGATGCTGTGCCGTGAACAAGACATGGAAGCGTTCAACAAGAAAGCTGCCAACAGgtgagcatcatgcctactgatgcctgtgcctctctgactctggcctctga #### Ssh3_ID444_12 --> 1 - 2 Original Alignment aGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTC-CGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCag aggttacttggggtagaaagacatggacaacttgtatttgcttcacacagaGCACAGGGCACTCGTGTACTAGTCCACTGCAAGACAGGTGTCAGTCGATCAGCTGCAACAGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAGAAGCTCCCGCCCCATAGTGCACCCCAATCACAGTTTTCTGCACCAGCTACGGACTTACCAAGGCATTTTGACTGCCaggtgagtgtggagaattgaaggttgattttgtgcatattgaggcgttgatt Alignment from CESAR aGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTC-CGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCag aggttacttggggtagaaagacatggacaacttgtatttgcttcacacagaGCACAGGGCACTCGTGTACTAGTCCACTGCAAGACAGGTGTCAGTCGATCAGCTGCAACAGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAGAAGCTCCCGCCCCATAGTGCACCCCAATCACAGTTTTCTGCACCAGCTACGGACTTACCAAGGCATTTTGACTGCCaggtgagtgtggagaattgaaggttgattttgtgcatattgaggcgttgatt Alignment from Spaln_aa2Genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCC-ATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggttacttggggtagaaagacatggacaacttgtatttgcttcacacagAGCACAGGGCACTCGTGTACTAGTCCACTGCAAGACAGGTGTCAGTCGATCAGCTGCAACAGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAGAAGCTCCCGCCCcATAGTGCACCCCAATCACAGTTTTCTGCACCAGCTACGGACTTACCAAGGCATTTTGACTGCCAGgtgagtgtggagaattgaaggttgattttgtgcatattgaggcgttgatt Alignment from Spaln_nt2Genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCC-ATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggttacttggggtagaaagacatggacaacttgtatttgcttcacacagAGCACAGGGCACTCGTGTACTAGTCCACTGCAAGACAGGTGTCAGTCGATCAGCTGCAACAGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAGAAGCTCCCGCCCCATAGTGCACCCCAATCACAGTTTTCTGCACCAGCTACGGACTTACCAAGGCATTTTGACTGCCAGgtgagtgtggagaattgaaggttgattttgtgcatattgaggcgttgatt Alignment from Pairagon AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCT-CCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggttacttggggtagaaagacatggacaacttgtatttgcttcacacagAGCACAGGGCACTCGTGTACTAGTCCACTGCAAGACAGGTGTCAGTCGATCAGCTGCAACAGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAGAAGCTCCCGCCCCATAGTGCACCCCAATCACAGTTTTCTGCACCAGCTACGGACTTACCAAGGCATTTTGACTGCCAGgtgagtgtggagaattgaaggttgattttgtgcatattgaggcgttgatt Alignment from Exonerate_protein2genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTC-CGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggttacttggggtagaaagacatggacaacttgtatttgcttcacacagAGCACAGGGCACTCGTGTACTAGTCCACTGCAAGACAGGTGTCAGTCGATCAGCTGCAACAGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAGAAGCTCCCGCCCCATAGTGCACCCCAATCACAGTTTTCTGCACCAGCTACGGACTTACCAAGGCATTTTGACTGCCAGgtgagtgtggagaattgaaggttgattttgtgcatattgaggcgttgatt Alignment from Exonerate_coding2genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTC-CGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggttacttggggtagaaagacatggacaacttgtatttgcttcacacagAGCACAGGGCACTCGTGTACTAGTCCACTGCAAGACAGGTGTCAGTCGATCAGCTGCAACAGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAGAAGCTCCCGCCCCATAGTGCACCCCAATCACAGTTTTCTGCACCAGCTACGGACTTACCAAGGCATTTTGACTGCCAGgtgagtgtggagaattgaaggttgattttgtgcatattgaggcgttgatt Alignment from GeneWise AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAG-CTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG aggttacttggggtagaaagacatggacaacttgtatttgcttcacacagAGCACAGGGCACTCGTGTACTAGTCCACTGCAAGACAGGTGTCAGTCGATCAGCTGCAACAGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAGAAGCTCCCGCCCCATAGTGCACCCCAATCACAGTTTTCTGCACCAGCTACGGACTTACCAAGGCATTTTGACTGCCAGgtgagtgtggagaattgaaggttgattttgtgcatattgaggcgttgatt #### Ssh3_ID445_11 --> 1 - 2 Original Alignment aGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAG-ACACATCGATTCATTGAGGATGCCag tgagagagtcattagtggttcctcatcgaaaccttcttcctctcctgcagaGTAAGTCACATCTTGAACATGGCCCGGGAGATCGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGCACACATCGATTTATTGAGGATGCCaggtaagactgctcccaggtttgatgccccatccactagtacagactgggac Alignment from CESAR aGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAG-ACACATCGATTCATTGAGGATGCCag tgagagagtcattagtggttcctcatcgaaaccttcttcctctcctgcagaGTAAGTCACATCTTGAACATGGCCCGGGAGATCGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGCACACATCGATTTATTGAGGATGCCaggtaagactgctcccaggtttgatgccccatccactagtacagactgggac Alignment from Spaln_aa2Genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAG-ACACATCGATTCATTGAGGATGCCAG tgagagagtcattagtggttcctcatcgaaaccttcttcctctcctgcagAGTAAGTCACATCTTGAACATGGCCCGGGAGATCGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGcACACATCGATTTATTGAGGATGCCAGgtaagactgctcccaggtttgatgccccatccactagtacagactgggac Alignment from Spaln_nt2Genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAG-ACACATCGATTCATTGAGGATGCCAG tgagagagtcattagtggttcctcatcgaaaccttcttcctctcctgcagAGTAAGTCACATCTTGAACATGGCCCGGGAGATCGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGCACACATCGATTTATTGAGGATGCCAGgtaagactgctcccaggtttgatgccccatccactagtacagactgggac Alignment from Pairagon AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAG-ACACATCGATTCATTGAGGATGCCAG tgagagagtcattagtggttcctcatcgaaaccttcttcctctcctgcagAGTAAGTCACATCTTGAACATGGCCCGGGAGATCGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGCACACATCGATTTATTGAGGATGCCAGgtaagactgctcccaggtttgatgccccatccactagtacagactgggac Alignment from Exonerate_protein2genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAG-ACACATCGATTCATTGAGGATGCCAG tgagagagtcattagtggttcctcatcgaaaccttcttcctctcctgcagAGTAAGTCACATCTTGAACATGGCCCGGGAGATCGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGCACACATCGATTTATTGAGGATGCCAGgtaagactgctcccaggtttgatgccccatccactagtacagactgggac Alignment from Exonerate_coding2genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAG-ACACATCGATTCATTGAGGATGCCAG tgagagagtcattagtggttcctcatcgaaaccttcttcctctcctgcagAGTAAGTCACATCTTGAACATGGCCCGGGAGATCGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGCACACATCGATTTATTGAGGATGCCAGgtaagactgctcccaggtttgatgccccatccactagtacagactgggac Alignment from GeneWise AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAG-ACACATCGATTCATTGAGGATGCCAG tgagagagtcattagtggttcctcatcgaaaccttcttcctctcctgcagAGTAAGTCACATCTTGAACATGGCCCGGGAGATCGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGCACACATCGATTTATTGAGGATGCCAGgtaagactgctcccaggtttgatgccccatccactagtacagactgggac #### Ssh3_ID446_10 --> 0 - 2 Original Alignment CCCACCTCTACTTG GGCTCTGAGTGGAATGCT-GCCAACCTGGAGGAACTTCAGAAAAACag CACACCTCTACTTGgtgaggggtcctttggctccatctctctgtccccagGGCTCTGAATGGAATGCTCGCCAACCTAGAGGAACTTCAAAAGAACaggtaaggtttctggctgtgggtgcctcttttttctcccagcctctctgtgg Alignment from CESAR CCCACCTCTACTTG GGCTCTGAGTGGAATGCT-GCCAACCTGGAGGAACTTCAGAAAAACag CACACCTCTACTTGgtaaggggtcctttggctccatctctctgtccccagGGCTCTGAATGGAATGCTCGCCAACCTAGAGGAACTTCAAAAGAACaggtaaggtttctggctgtgggtgcctcttttttctcccagcctctctgtgg Alignment from Spaln_aa2Genome CCCACCTCTACTTG GGCTCTGAGTGGAATGCT-GCCAACCTGGAGGAACTTCAGAAAAACAG CACACCTCTACTTGgtgaggggtcctttggctccatctctctgtccccagGGCTCTGAATGGAATGCTcGCCAACCTAGAGGAACTTCAAAAGAACAGgtaaggtttctggctgtgggtgcctcttttttctcccagcctctctgtgg Alignment from Spaln_nt2Genome CCCACCTCTACTTG GGCTCTGAGTGGAATGCT-GCCAACCTGGAGGAACTTCAGAAAAACAG CACACCTCTACTTGgtgaggggtcctttggctccatctctctgtccccagGGCTCTGAATGGAATGCTCGCCAACCTAGAGGAACTTCAAAAGAACAGgtaaggtttctggctgtgggtgcctcttttttctcccagcctctctgtgg Alignment from Pairagon CCCACCTCTACTTG GGCTCTGAGTGGAATGCT-GCCAACCTGGAGGAACTTCAGAAAAACAG CACACCTCTACTTGgtgaggggtcctttggctccatctctctgtccccagGGCTCTGAATGGAATGCTCGCCAACCTAGAGGAACTTCAAAAGAACAGgtaaggtttctggctgtgggtgcctcttttttctcccagcctctctgtgg Alignment from Exonerate_protein2genome CCCACCTCTACTTG GGCTCTGAGTGGAATGCT-GCCAACCTGGAGGAACTTCAGAAAAACAG CACACCTCTACTTGgtgaggggtcctttggctccatctctctgtccccagGGCTCTGAATGGAATGCTCGCCAACCTAGAGGAACTTCAAAAGAACAGgtaaggtttctggctgtgggtgcctcttttttctcccagcctctctgtgg Alignment from Exonerate_coding2genome CCCACCTCTACTTGGGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAG CACACCTCTACTTGGTGAGGGGTCCTTTGGCTCCATCTCTCTGTCCCCAGGGCTCTGAATGgaatgctcgccaacctagaggaacttcaaaagaacaggtaaggtttctggctgtgggtgcctcttttttctcccagcctctctgtgg Alignment from GeneWise CCCACCTCTACTTG------------------------------------GGCTCTGAGTGGAATGCT-GCCAACCTGGAGGAACTTCAGAAAAACAG CACACCTCTACTTGGTGAGGGGTCCTTTGGCTCCATCTCTCTGTCCCCAGGGCTCTGAATGGAATGCTCGCCAACCTAGAGGAACTTCAAAAGAACAGgtaaggtttctggctgtgggtgcctcttttttctcccagcctctctgtgg #### Ssh3_ID448_8 --> 1 - 0 Original Alignment gGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCT-GAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgagatgtacacccgcgtccgggcgcgcgcaggGCCTCAGAGCAGGAAAAGACGGAACAGGCAATCCTGGTACGAATTGTGGCAGGTGTTAGATACTAGTGATCTGGAGAGTGTCACTTCCAAAGAGgtacttgatgaccaggatgaccaggctggctggtggttgccttcctttgt Alignment from CESAR gGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCT-GAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgagatgtacacccgcgtccgggcgcgcgcaggGCCTCAGAGCAGGAAAAGACGGAACAGGCAATCCTGGTACGAATTGTGGCAGGTGTTAGATACTAGTGATCTGGAGAGTGTCACTTCCAAAGAGgtacttgatgaccaggatgaccaggctggctggtggttgccttcctttgt Alignment from Spaln_aa2Genome GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCT-GAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgagatgtacacccgcgtccgggcgcgcgcagGGCCTCAGAGCAGGAAAAGACGGAACAGGCAATCCTGGTAcGAATTGTGGCAGGTGTTAGATACTAGTGATCTGGAGAGTGTCACTTCCAAAGAGgtacttgatgaccaggatgaccaggctggctggtggttgccttcctttgt Alignment from Spaln_nt2Genome GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCT-GAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgagatgtacacccgcgtccgggcgcgcgcagGGCCTCAGAGCAGGAAAAGACGGAACAGGCAATCCTGGTACGAATTGTGGCAGGTGTTAGATACTAGTGATCTGGAGAGTGTCACTTCCAAAGAGgtacttgatgaccaggatgaccaggctggctggtggttgccttcctttgt Alignment from Pairagon GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGC-TGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgagatgtacacccgcgtccgggcgcgcgcagGGCCTCAGAGCAGGAAAAGACGGAACAGGCAATCCTGGTACGAATTGTGGCAGGTGTTAGATACTAGTGATCTGGAGAGTGTCACTTCCAAAGAGgtacttgatgaccaggatgaccaggctggctggtggttgccttcctttgt Alignment from Exonerate_protein2genome GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCT-GAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgagatgtacacccgcgtccgggcgcgcgcagGGCCTCAGAGCAGGAAAAGACGGAACAGGCAATCCTGGTACGAATTGTGGCAGGTGTTAGATACTAGTGATCTGGAGAGTGTCACTTCCAAAGAGgtacttgatgaccaggatgaccaggctggctggtggttgccttcctttgt Alignment from Exonerate_coding2genome GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTGGCT-GAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgagatgtacacccgcgtccgggcgcgcgcagGGCCTCAGAGCAGGAAAAGACGGAACAGGCAATCCTGGTACGAATTGTGGCAGGTGTTAGATACTAGTGATCTGGAGAGTGTCACTTCCAAAGAGgtacttgatgaccaggatgaccaggctggctggtggttgccttcctttgt Alignment from GeneWise GGCTTCAGAGCAGGAAAAGATGGAGCAGGCGATCCTG-GCTGAATTGTGGCAGGTGTTGGACACCAGTGACCTGGACAGTGTCACTTCTAAAGAG ttgctgctggtaactaagtgagatgtacacccgcgtccgggcgcgcgcagGGCCTCAGAGCAGGAAAAGACGGAACAGGCAATCCTGGTACGAATTGTGGCAGGTGTTAGATACTAGTGATCTGGAGAGTGTCACTTCCAAAGAGgtacttgatgaccaggatgaccaggctggctggtggttgccttcctttgt #### Ssh3_ID450_6 --> 1 - 2 Original Alignment gGGCTTCAGTGTGACATCTGGTGGT-CAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGtg tgcagctaatcacctggtattgggttcttgtttactctattctattccagcGGCTTAAGTGTGACGTCTGGTGGTCCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGtggtaagcggtgcacagctataaggtttgccagcacacttggttggcagcct Alignment from CESAR gGGCTTCAGTGTGACATCTGGTGGT-CAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGtg tgcagctaatcacctggtattgggttcttgtttactctattctattccagcGGCTTAAGTGTGACGTCTGGTGGTCCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGtggtaagcggtgcacagctataaggtttgccagcacacttggttggcagcct Alignment from Spaln_aa2Genome GGGCTTCAGTGTGACATCTGGTGGT-CAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG tgcagctaatcacctggtattgggttcttgtttactctattctattccagCGGCTTAAGTGTGACGTCTGGTGGTcCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTGgtaagcggtgcacagctataaggtttgccagcacacttggttggcagcct Alignment from Spaln_nt2Genome GGGCTTCAGTGTGACATCTGGTGGT-CAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG tgcagctaatcacctggtattgggttcttgtttactctattctattccagCGGCTTAAGTGTGACGTCTGGTGGTCCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTGgtaagcggtgcacagctataaggtttgccagcacacttggttggcagcct Alignment from Pairagon GGGCTTCAGTGTGACATCTGGTGGT-CAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG tgcagctaatcacctggtattgggttcttgtttactctattctattccagCGGCTTAAGTGTGACGTCTGGTGGTCCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTGgtaagcggtgcacagctataaggtttgccagcacacttggttggcagcct Alignment from Exonerate_protein2genome GGGCTTCAGTGTGACATCTGGTGGT-CAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG tgcagctaatcacctggtattgggttcttgtttactctattctattccagCGGCTTAAGTGTGACGTCTGGTGGTCCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTGgtaagcggtgcacagctataaggtttgccagcacacttggttggcagcct Alignment from Exonerate_coding2genome GGGCTTCAGTGTGACATCTGGTGGT-CAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG tgcagctaatcacctggtattgggttcttgtttactctattctattccagCGGCTTAAGTGTGACGTCTGGTGGTCCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTGgtaagcggtgcacagctataaggtttgccagcacacttggttggcagcct Alignment from GeneWise GGGCTTCAGTGTGACATCTGGTGGT-CAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG tgcagctaatcacctggtattgggttcttgtttactctattctattccagCGGCTTAAGTGTGACGTCTGGTGGTCCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTGgtaagcggtgcacagctataaggtttgccagcacacttggttggcagcct #### Ssh3_ID451_5 --> 1 - 2 Original Alignment tTCCCAC---------AGCTGC-ACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATgg gcccaggctgcaatgtgctggggaacaaattttattttgaatcttaacagtTGCCACAGCTGCACCAGCTGCCACACTAGGTCTTGTCCTGCCCCTCTGGAGTGATACCCAAGTATACCTGGATGGGGATgggtaaggggctcctctctgtaggaacaagagggggttgacaagaatgggta Alignment from CESAR tTCCCACAGC---------TGC-ACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATgg gcccaggctgcaatgtgctggggaacaaattttattttgaatcttaacagtTGCCACAGCTGCACCAGCTGCCACACTAGGTCTTGTCCTGCCCCTCTGGAGTGATACCCAAGTATACCTGGATGGGGATgggtaaggggctcctctctgtaggaacaagagggggttgacaagaatgggta Alignment from Spaln_aa2Genome GCAGTTCCCACAGCTGCACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG gcccaggctgcaatgtgctggggaacaaattttattttgaatcttaacagttgccacagCTGCACCA---GCTGCCACACTAGGTCTTGTCCTGCCCCTCTGGAGTGATACCCAAGTATACCTGGATGGGGATGGgtaaggggctcctctctgtaggaacaagagggggttgacaagaatgggta Alignment from Spaln_nt2Genome TTCCCACAGCTGCACC----------CTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG gcccaggctgcaatgtgctggggaacaaattttattttgaatcttaacagTTGCCACAGCTGCACCAGCTGCCACACTAGGTCTTGTCCTGCCCCTCTGGAGTGATACCCAAGTATACCTGGATGGGGATGGgtaaggggctcctctctgtaggaacaagagggggttgacaagaatgggta Alignment from Pairagon TTCCCACAGCTGCACC----------CTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG gcccaggctgcaatgtgctggggaacaaattttattttgaatcttaacagTTGCCACAGCTGCACCAGCTGCCACACTAGGTCTTGTCCTGCCCCTCTGGAGTGATACCCAAGTATACCTGGATGGGGATGGgtaaggggctcctctctgtaggaacaagagggggttgacaagaatgggta Alignment from Exonerate_protein2genome TTCCCACAGCTGC-ACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG gcccaggctgcaatgtgctggggaacaaattttattttgaatcttaacagttgccacagCTGCACCAGCTGCCACACTAGGTCTTGTCCTGCCCCTCTGGAGTGATACCCAAGTATACCTGGATGGGGATGGgtaaggggctcctctctgtaggaacaagagggggttgacaagaatgggta Alignment from Exonerate_coding2genome TTCCCACAGCTGC-ACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG gcccaggctgcaatgtgctggggaacaaattttattttgaatcttaacagttgccacagCTGCACCAGCTGCCACACTAGGTCTTGTCCTGCCCCTCTGGAGTGATACCCAAGTATACCTGGATGGGGATGGgtaaggggctcctctctgtaggaacaagagggggttgacaagaatgggta Alignment from GeneWise TTCCCACAGCTGC-ACCCTGGGCCTGGTCTTGCCCCTCTGGAGTGATACCCAGGTGTACCTGGACGGCGATGG gcccaggctgcaatgtgctggggaacaaattttattttgaatcttaacagttgccacagCTGCACCAGCTGCCACACTAGGTCTTGTCCTGCCCCTCTGGAGTGATACCCAAGTATACCTGGATGGGGATGGgtaaggggctcctctctgtaggaacaagagggggttgacaagaatgggta #### Stip1_ID1989_12 --> 2 - 0 Original Alignment tcAAGGGTTATACACGGAAA-GCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG tgagaggattgagggtagtaggaccagcgagggataccctcccatttcagacAAGGGTTATACCCGGCAACGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGCAC------CAAAAGGCATTAGACCTGGACTCCAGTTGTAAAgtgagttgctgctagcttatacacacatccctgcttacttcccctaggat Alignment from CESAR tcAAGGGTTATACACGGAAA-GCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG tgagaggattgagggtagtaggaccagcgagggataccctcccatttcagacAAGGGTTATACCCGGCAACGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATG------CACCAAAAGGCATTAGACCTGGACTCCAGTTGTAAAgtgagttgctgctagcttatacacacatccctgcttacttcccctaggat Alignment from Spaln_aa2Genome TCAAGGGTTATACACGGAAA-GCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG tgagaggattgagggtagtaggaccagcgagggataccctcccatttcagACAAGGGTTATACCCGGCAAcGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATG------CACCAAAAGGCATTAGACCTGGACTCCAGTTGTAAAgtgagttgctgctagcttatacacacatccctgcttacttcccctaggat Alignment from Spaln_nt2Genome TCAAGGGTTATACACGGAAA-GCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG tgagaggattgagggtagtaggaccagcgagggataccctcccatttcagACAAGGGTTATACCCGGCAACGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCA------TGCACCAAAAGGCATTAGACCTGGACTCCAGTTGTAAAgtgagttgctgctagcttatacacacatccctgcttacttcccctaggat Alignment from Pairagon TCAAGGGTTATACACGG-AAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG tgagaggattgagggtagtaggaccagcgagggataccctcccatttcagACAAGGGTTATACCCGGCAACGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCA------TGCACCAAAAGGCATTAGACCTGGACTCCAGTTGTAAAgtgagttgctgctagcttatacacacatccctgcttacttcccctaggat Alignment from Exonerate_protein2genome TCAAGGGTTATACACGGAAA-GCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG tgagaggattgagggtagtaggaccagcgagggataccctcccatttcagACAAGGGTTATACCCGGCAACGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATG------CACCAAAAGGCATTAGACCTGGACTCCAGTTGTAAAgtgagttgctgctagcttatacacacatccctgcttacttcccctaggat Alignment from Exonerate_coding2genome TCAAGGGTTATACACGGAAA-GCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG tgagaggattgagggtagtaggaccagcgagggataccctcccatttcagACAAGGGTTATACCCGGCAACGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATG------CACCAAAAGGCATTAGACCTGGACTCCAGTTGTAAAgtgagttgctgctagcttatacacacatccctgcttacttcccctaggat Alignment from GeneWise TCAAGGGTTATACACGG-AAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG tgagaggattgagggtagtaggaccagcgagggataccctcccatttcagACAAGGGTTATACCCGGCAACGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATG------CACCAAAAGGCATTAGACCTGGACTCCAGTTGTAAAgtgagttgctgctagcttatacacacatccctgcttacttcccctaggat #### Stx3_ID3299_7 --> 2 - 0 Original Alignment ctGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCA-GCCATCTTCACTTCTGGG cacgctgctcattcttcctaaatttcatctgccttgtttgtttgtttcagctGGCAAGAAGACAACAGATGAGGAGCTAGAGGAGATGTTGGAGAGTGGTAATCCACGCCATCTTCACTTCTGGGgtgagatacatatgcatttggttacagtcaaagtagactggtatgggccc Alignment from CESAR ctGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCA-GCCATCTTCACTTCTGGG cacgctgctcattcttcctaaatttcatctgccttgtttgtttgtttcagctGGCAAGAAGACAACAGATGAGGAGCTAGAGGAGATGTTGGAGAGTGGTAATCCACGCCATCTTCACTTCTGGGgtgagatacatatgcatttggttacagtcaaagtagactggtatgggccc Alignment from Spaln_aa2Genome CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCA-GCCATCTTCACTTCTGGG cacgctgctcattcttcctaaatttcatctgccttgtttgtttgtttcagCTGGCAAGAAGACAACAGATGAGGAGCTAGAGGAGATGTTGGAGAGTGGTAATCCAcGCCATCTTCACTTCTGGGgtgagatacatatgcatttggttacagtcaaagtagactggtatgggccc Alignment from Spaln_nt2Genome CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCA-GCCATCTTCACTTCTGGG cacgctgctcattcttcctaaatttcatctgccttgtttgtttgtttcagCTGGCAAGAAGACAACAGATGAGGAGCTAGAGGAGATGTTGGAGAGTGGTAATCCACGCCATCTTCACTTCTGGGgtgagatacatatgcatttggttacagtcaaagtagactggtatgggccc Alignment from Pairagon CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCA-GCCATCTTCACTTCTGGG cacgctgctcattcttcctaaatttcatctgccttgtttgtttgtttcagCTGGCAAGAAGACAACAGATGAGGAGCTAGAGGAGATGTTGGAGAGTGGTAATCCACGCCATCTTCACTTCTGGGgtgagatacatatgcatttggttacagtcaaagtagactggtatgggccc Alignment from Exonerate_protein2genome CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCA-GCCATCTTCACTTCTGGG cacgctgctcattcttcctaaatttcatctgccttgtttgtttgtttcagCTGGCAAGAAGACAACAGATGAGGAGCTAGAGGAGATGTTGGAGAGTGGTAATCCACGCCATCTTCACTTCTGGGgtgagatacatatgcatttggttacagtcaaagtagactggtatgggccc Alignment from Exonerate_coding2genome CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCA-GCCATCTTCACTTCTGGG cacgctgctcattcttcctaaatttcatctgccttgtttgtttgtttcagCTGGCAAGAAGACAACAGATGAGGAGCTAGAGGAGATGTTGGAGAGTGGTAATCCACGCCATCTTCACTTCTGGGgtgagatacatatgcatttggttacagtcaaagtagactggtatgggccc Alignment from GeneWise CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCA-GCCATCTTCACTTCTGGG cacgctgctcattcttcctaaatttcatctgccttgtttgtttgtttcagCTGGCAAGAAGACAACAGATGAGGAGCTAGAGGAGATGTTGGAGAGTGGTAATCCACGCCATCTTCACTTCTGGGgtgagatacatatgcatttggttacagtcaaagtagactggtatgggccc #### Stx5a_ID2330_2 --> 0 - 2 Original Alignment AATGGAATCCAAACAAGC-AAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCag gaataactaagcaacagtgactaaattaattcttatttcttcattcctagAATGGAATCCAAACAAGCCAAACCAGCTCTGCATGCAGCCCGTCAGTGCAGTGAACTTACCCTTATGGCTaggtgcggtgtaggaattttggaatgggcggattgtcttttgaaatttgtaa Alignment from CESAR AATGGAATCCAAACAAGC-AAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCag gaataactaagcaacagtgactaaattaattcttatttcttcattcctagAATGGAATCCAAACAAGCCAAACCAGCTCTGCATGCAGCCCGTCAGTGCAGTGAACTTACCCTTATGGCTaggtgcggtgtaggaattttggaatgggcggattgtcttttgaaatttgtaa Alignment from Spaln_aa2Genome GCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG gaataactaagcaacagtgactaaattaattcttatttcttcattcctagaatggaatccaaacaagCCAAACCAGCTCTGCATGCAGCCCGTCAGTGCAGTGAACTTACCCTTATGGCTAGgtgcggtgtaggaattttggaatgggcggattgtcttttgaaatttgtaa Alignment from Spaln_nt2Genome AATGGAATCCAAACAAG-CAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG gaataactaagcaacagtgactaaattaattcttatttcttcattcctagAATGGAATCCAAACAAGCCAAACCAGCTCTGCATGCAGCCCGTCAGTGCAGTGAACTTACCCTTATGGCTAGgtgcggtgtaggaattttggaatgggcggattgtcttttgaaatttgtaa Alignment from Pairagon AATGGAATCCAAACAAG-CAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG gaataactaagcaacagtgactaaattaattcttatttcttcattcctagAATGGAATCCAAACAAGCCAAACCAGCTCTGCATGCAGCCCGTCAGTGCAGTGAACTTACCCTTATGGCTAGgtgcggtgtaggaattttggaatgggcggattgtcttttgaaatttgtaa Alignment from Exonerate_protein2genome AATGGAATCCAAACAAGC-AAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG gaataactaagcaacagtgactaaattaattcttatttcttcattcctagAATGGAATCCAAACAAGCCAAACCAGCTCTGCATGCAGCCCGTCAGTGCAGTGAACTTACCCTTATGGCTAGgtgcggtgtaggaattttggaatgggcggattgtcttttgaaatttgtaa Alignment from Exonerate_coding2genome AATGGAATCCAAACAAGC-AAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG gaataactaagcaacagtgactaaattaattcttatttcttcattcctagAATGGAATCCAAACAAGCCAAACCAGCTCTGCATGCAGCCCGTCAGTGCAGTGAACTTACCCTTATGGCTAGgtgcggtgtaggaattttggaatgggcggattgtcttttgaaatttgtaa Alignment from GeneWise GCAAACCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAG gaataactaagcaacagtgactaaattaattcttatttcttcattcctagaatggaatccaaacaagCCAAACCAGCTCTGCATGCAGCCCGTCAGTGCAGTGAACTTACCCTTATGGCTAGgtgcggtgtaggaattttggaatgggcggattgtcttttgaaatttgtaa #### Stx5a_ID2334_6 --> 0 - 0 Original Alignment TCAAAGCTGGCTTCTATG-TCCAATGACTTCAAGTCAGTTCTAGAAGTGAGGACTGAG gggggggaaagcaaaataaattctctgttttatgatgctgttgtttttagTCAAAGCTGGCTTCTATGCTCCAATGACTTCAAGTCAGTTCTAGAAGTGAGGACTGAGgtaaaagggataagtagtagggttaaggagtttttgtagggtacaccaca Alignment from CESAR TCAAAGCTGGCTTCTATG-TCCAATGACTTCAAGTCAGTTCTAGAAGTGAGGACTGAG gggggggaaagcaaaataaattctctgttttatgatgctgttgtttttagTCAAAGCTGGCTTCTATGCTCCAATGACTTCAAGTCAGTTCTAGAAGTGAGGACTGAGgtaaaagggataagtagtagggttaaggagtttttgtagggtacaccaca Alignment from Spaln_aa2Genome TCAAAGCTGGCTTCTATG-TCCAATGACTTCAAGTCAGTTCTAGAAGTGAGGACTGAG gggggggaaagcaaaataaattctctgttttatgatgctgttgtttttagTCAAAGCTGGCTTCTATGcTCCAATGACTTCAAGTCAGTTCTAGAAGTGAGGACTGAGgtaaaagggataagtagtagggttaaggagtttttgtagggtacaccaca Alignment from Spaln_nt2Genome TCAAAGCTGGCTTCTATG-TCCAATGACTTCAAGTCAGTTCTAGAAGTGAGGACTGAG gggggggaaagcaaaataaattctctgttttatgatgctgttgtttttagTCAAAGCTGGCTTCTATGCTCCAATGACTTCAAGTCAGTTCTAGAAGTGAGGACTGAGgtaaaagggataagtagtagggttaaggagtttttgtagggtacaccaca Alignment from Pairagon TCAAAGCTGGCTTCTATG-TCCAATGACTTCAAGTCAGTTCTAGAAGTGAGGACTGAG gggggggaaagcaaaataaattctctgttttatgatgctgttgtttttagTCAAAGCTGGCTTCTATGCTCCAATGACTTCAAGTCAGTTCTAGAAGTGAGGACTGAGgtaaaagggataagtagtagggttaaggagtttttgtagggtacaccaca Alignment from Exonerate_protein2genome TCAAAGCTGGCTTCTATG-TCCAATGACTTCAAGTCAGTTCTAGAAGTGAGGACTGAG gggggggaaagcaaaataaattctctgttttatgatgctgttgtttttagTCAAAGCTGGCTTCTATGCTCCAATGACTTCAAGTCAGTTCTAGAAGTGAGGACTGAGgtaaaagggataagtagtagggttaaggagtttttgtagggtacaccaca Alignment from Exonerate_coding2genome TCAAAGCTGGCTTCTATG-TCCAATGACTTCAAGTCAGTTCTAGAAGTGAGGACTGAG gggggggaaagcaaaataaattctctgttttatgatgctgttgtttttagTCAAAGCTGGCTTCTATGCTCCAATGACTTCAAGTCAGTTCTAGAAGTGAGGACTGAGgtaaaagggataagtagtagggttaaggagtttttgtagggtacaccaca Alignment from GeneWise TCAAAGCTGGCTTCTATG-TCCAATGACTTCAAGTCAGTTCTAGAAGTGAGGACTGAG gggggggaaagcaaaataaattctctgttttatgatgctgttgtttttagTCAAAGCTGGCTTCTATGCTCCAATGACTTCAAGTCAGTTCTAGAAGTGAGGACTGAGgtaaaagggataagtagtagggttaaggagtttttgtagggtacaccaca #### Stx5a_ID2335_7 --> 0 - 1 Original Alignment AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCA-GCCCTGCCTCTTGCCCCCAACAACCTTg acacaccaatattctcagagcctagacttgtgttctgcttctgtcctcagAATCTGAAACAGCAGAGGAACCGGCGAGCCCAGTTATCCAGGGCACCAGTGTCTCGCCCTGCCGCTAGCCCCCAACAACCTTggtgagtttgcattaactatgcctaggggatatgttctgacctggtccctc Alignment from CESAR AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCA-GCCCTGCCTCTTGCCCCCAACAACCTTg acacaccaatattctcagagcctagacttgtgttctgcttctgtcctcagAATCTGAAACAGCAGAGGAACCGGCGAGCCCAGTTATCCAGGGCACCAGTGTCTCGCCCTGCCGCTAGCCCCCAACAACCTTggtgagtttgcattaactatgcctaggggatatgttctgacctggtccctc Alignment from Spaln_aa2Genome AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCA-GCCCTGCCTCTTGCCCCCAACAACCTTG acacaccaatattctcagagcctagacttgtgttctgcttctgtcctcagAATCTGAAACAGCAGAGGAACCGGCGAGCCCAGTTATCCAGGGCACCAGTGTCTcGCCCTGCCGCTAGCCCCCAACAACCTTGgtgagtttgcattaactatgcctaggggatatgttctgacctggtccctc Alignment from Spaln_nt2Genome AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCA-GCCCTGCCTCTTGCCCCCAACAACCTTG acacaccaatattctcagagcctagacttgtgttctgcttctgtcctcagAATCTGAAACAGCAGAGGAACCGGCGAGCCCAGTTATCCAGGGCACCAGTGTCTCGCCCTGCCGCTAGCCCCCAACAACCTTGgtgagtttgcattaactatgcctaggggatatgttctgacctggtccctc Alignment from Pairagon AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTC-AGCCCTGCCTCTTGCCCCCAACAACCTTG acacaccaatattctcagagcctagacttgtgttctgcttctgtcctcagAATCTGAAACAGCAGAGGAACCGGCGAGCCCAGTTATCCAGGGCACCAGTGTCTCGCCCTGCCGCTAGCCCCCAACAACCTTGgtgagtttgcattaactatgcctaggggatatgttctgacctggtccctc Alignment from Exonerate_protein2genome AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCA-GCCCTGCCTCTTGCCCCCAACAACCTTG acacaccaatattctcagagcctagacttgtgttctgcttctgtcctcagAATCTGAAACAGCAGAGGAACCGGCGAGCCCAGTTATCCAGGGCACCAGTGTCTCGCCCTGCCGCTAGCCCCCAACAACCTTGgtgagtttgcattaactatgcctaggggatatgttctgacctggtccctc Alignment from Exonerate_coding2genome AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTGTCA-GCCCTGCCTCTTGCCCCCAACAACCTTG acacaccaatattctcagagcctagacttgtgttctgcttctgtcctcagAATCTGAAACAGCAGAGGAACCGGCGAGCCCAGTTATCCAGGGCACCAGTGTCTCGCCCTGCCGCTAGCCCCCAACAACCTTGgtgagtttgcattaactatgcctaggggatatgttctgacctggtccctc Alignment from GeneWise AATCTGAAACAGCAGAGGAACCGTCGGGAACAGTTCTCCAGGGCACCAGTG-TCAGCCCTGCCTCTTGCCCCCAACAACCTTG acacaccaatattctcagagcctagacttgtgttctgcttctgtcctcagAATCTGAAACAGCAGAGGAACCGGCGAGCCCAGTTATCCAGGGCACCAGTGTCTCGCCCTGCCGCTAGCCCCCAACAACCTTGgtgagtttgcattaactatgcctaggggatatgttctgacctggtccctc #### Syvn1_ID1384_3 --> 0 - 0 Original Alignment CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTG-GCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggcaaggtgtctgaatgctgtttcatgcttgctgccctccaaccctcagCACCTCCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTTACTGTTATTCGAGACGACTCAAGTCCCCGATTTGTGCGCACTCTTTATGCTCCTTCTCTTCCTCAAATGTTTCCAGTGGCTAGCTGAAGACCATGTGGATTTTgtaagttcagatttgctgatgaacatgtgggtgtatcgtgtgggacctcc Alignment from CESAR CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTG-GCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggcaaggtgtctgaatgctgtttcatgcttgctgccctccaaccctcagCACCTCCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTTACTGTTATTCGAGACGACTCAAGTCCCCGATTTGTGCGCACTCTTTATGCTCCTTCTCTTCCTCAAATGTTTCCAGTGGCTAGCTGAAGACCATGTGGATTTTgtaagttcagatttgctgatgaacatgtgggtgtatcgtgtgggaccttt Alignment from Spaln_aa2Genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTG-GCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggcaaggtgtctgaatgctgtttcatgcttgctgccctccaaccctcagCACCTCCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTTACTGTTATTCGAGACGACTCAAGTCCCCGATTTGTGcGCACTCTTTATGCTCCTTCTCTTCCTCAAATGTTTCCAGTGGCTAGCTGAAGACCATGTGGATTTTgtaagttcagatttgctgatgaacatgtgggtgtatcgtgtgggacctcc Alignment from Spaln_nt2Genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTG-GCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggcaaggtgtctgaatgctgtttcatgcttgctgccctccaaccctcagCACCTCCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTTACTGTTATTCGAGACGACTCAAGTCCCCGATTTGTGCGCACTCTTTATGCTCCTTCTCTTCCTCAAATGTTTCCAGTGGCTAGCTGAAGACCATGTGGATTTTgtaagttcagatttgctgatgaacatgtgggtgtatcgtgtgggacctcc Alignment from Pairagon CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTG-GCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggcaaggtgtctgaatgctgtttcatgcttgctgccctccaaccctcagCACCTCCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTTACTGTTATTCGAGACGACTCAAGTCCCCGATTTGTGCGCACTCTTTATGCTCCTTCTCTTCCTCAAATGTTTCCAGTGGCTAGCTGAAGACCATGTGGATTTTgtaagttcagatttgctgatgaacatgtgggtgtatcgtgtgggacctcc Alignment from Exonerate_protein2genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTG-GCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggcaaggtgtctgaatgctgtttcatgcttgctgccctccaaccctcagCACCTCCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTTACTGTTATTCGAGACGACTCAAGTCCCCGATTTGTGCGCACTCTTTATGCTCCTTCTCTTCCTCAAATGTTTCCAGTGGCTAGCTGAAGACCATGTGGATTTTgtaagttcagatttgctgatgaacatgtgggtgtatcgtgtgggacctcc Alignment from Exonerate_coding2genome CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTG-GCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggcaaggtgtctgaatgctgtttcatgcttgctgccctccaaccctcagCACCTCCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTTACTGTTATTCGAGACGACTCAAGTCCCCGATTTGTGCGCACTCTTTATGCTCCTTCTCTTCCTCAAATGTTTCCAGTGGCTAGCTGAAGACCATGTGGATTTTgtaagttcagatttgctgatgaacatgtgggtgtatcgtgtgggacctcc Alignment from GeneWise CACCTTCTGGAACGGTCCTGGTACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTG-GCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT gggcaaggtgtctgaatgctgtttcatgcttgctgccctccaaccctcagCACCTCCTGGAACGGTCCTGGTATGCTGTTACTGAAACTTGTTTGGCCTTTACTGTTATTCGAGACGACTCAAGTCCCCGATTTGTGCGCACTCTTTATGCTCCTTCTCTTCCTCAAATGTTTCCAGTGGCTAGCTGAAGACCATGTGGATTTTgtaagttcagatttgctgatgaacatgtgggtgtatcgtgtgggacctcc #### Syvn1_ID1385_4 --> 0 - 1 Original Alignment ATGGAACGCAGC-CCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCt gaacatgtgggtgtatcgtgtgggacctttcacacctctctcccgtgcagATGGAGCGTAGCCCCCAACATTTCCTGGCTCTTCCACTGCCGGATTGTCtgtatcggaaacttgatacattagaggggtgtgtatagtctgtttgagggt Alignment from CESAR ATGGAACGCAGC-CCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCt gaacatgtgggtgtatcgtgtgggacctttcacacctctctcccgtgcagATGGAGCGTAGCCCCCAACATTTCCTGGCTCTTCCACTGCCGGATTGTCtgtatcggaaacttgatacattagaggggtgtgtatagtctgtttgagggt Alignment from Spaln_aa2Genome ATGGAACGCAGC-CCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT gaacatgtgggtgtatcgtgtgggacctttcacacctctctcccgtgcagATGGAGCGTAGCcCCCAACATTTCCTGGCTCTTCCACTGCCGGATTGTCTgtatcggaaacttgatacattagaggggtgtgtatagtctgtttgagggt Alignment from Spaln_nt2Genome ATGGAACGCAGCCCC-AACATCTCCTGGCTCTTCCACTGCCGCATCGTCT gaacatgtgggtgtatcgtgtgggacctttcacacctctctcccgtgcagATGGAGCGTAGCCCCCAACATTTCCTGGCTCTTCCACTGCCGGATTGTCTgtatcggaaacttgatacattagaggggtgtgtatagtctgtttgagggt Alignment from Pairagon ATGGAACGCAG-CCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT gaacatgtgggtgtatcgtgtgggacctttcacacctctctcccgtgcagATGGAGCGTAGCCCCCAACATTTCCTGGCTCTTCCACTGCCGGATTGTCTgtatcggaaacttgatacattagaggggtgtgtatagtctgtttgagggt Alignment from Exonerate_protein2genome ATGGAACGCAGC-CCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT gaacatgtgggtgtatcgtgtgggacctttcacacctctctcccgtgcagATGGAGCGTAGCCCCCAACATTTCCTGGCTCTTCCACTGCCGGATTGTCTgtatcggaaacttgatacattagaggggtgtgtatagtctgtttgagggt Alignment from Exonerate_coding2genome ATGGAACGCAGC-CCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT gaacatgtgggtgtatcgtgtgggacctttcacacctctctcccgtgcagATGGAGCGTAGCCCCCAACATTTCCTGGCTCTTCCACTGCCGGATTGTCTgtatcggaaacttgatacattagaggggtgtgtatagtctgtttgagggt Alignment from GeneWise GGAA-- -CGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT GAACATgtgggtgtatcgtgtgggacctttcacacctctctcccgtgcagatggagCGTAGCCCCCAACATTTCCTGGCTCTTCCACTGCCGGATTGTCTgtatcggaaacttgatacattagaggggtgtgtatagtctgtttgagggt #### Syvn1_ID1388_7 --> 2 - 2 Original Alignment gcTTCATCAAGGTCCTGCTGTACATG-GCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGag ggtgtatctgccagccctgcagttggcttctttgttttactaaaaaataggcTTCATCAAGGTGCTGCTGTATATGCGCCTTCATGACCATCATGATCAAGGTGCACACATTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGaggtggggtgggccttgtctttgtcactccgatattcgtcttcatgtcacac Alignment from CESAR gcTTCATCAAGGTCCTGCTGTACATG-GCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGag ggtgtatctgccagccctgcagttggcttctttgttttactaaaaaataggcTTCATCAAGGTGCTGCTGTATATGCGCCTTCATGACCATCATGATCAAGGTGCACACATTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGaggtggggtgggccttgtctttgtcactccgatattcgtcttcatgtcacac Alignment from Spaln_aa2Genome GCTTCATCAAGGTCCTGCTGTACATG-GCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtatctgccagccctgcagttggcttctttgttttactaaaaaatagGCTTCATCAAGGTGCTGCTGTATATGcGCCTTCATGACCATCATGATCAAGGTGCACACATTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtggggtgggccttgtctttgtcactccgatattcgtcttcatgtcacac Alignment from Spaln_nt2Genome GCTTCATCAAGGTCCTGCTGTACATG-GCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtatctgccagccctgcagttggcttctttgttttactaaaaaatagGCTTCATCAAGGTGCTGCTGTATATGCGCCTTCATGACCATCATGATCAAGGTGCACACATTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtggggtgggccttgtctttgtcactccgatattcgtcttcatgtcacac Alignment from Pairagon GCTTCATCAAGGTCCTGCTGTACATG-GCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtatctgccagccctgcagttggcttctttgttttactaaaaaatagGCTTCATCAAGGTGCTGCTGTATATGCGCCTTCATGACCATCATGATCAAGGTGCACACATTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtggggtgggccttgtctttgtcactccgatattcgtcttcatgtcacac Alignment from Exonerate_protein2genome GCTTCATCAAGGTCCTGCTGTACATG-GCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtatctgccagccctgcagttggcttctttgttttactaaaaaatagGCTTCATCAAGGTGCTGCTGTATATGCGCCTTCATGACCATCATGATCAAGGTGCACACATTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtggggtgggccttgtctttgtcactccgatattcgtcttcatgtcacac Alignment from Exonerate_coding2genome GCTTCATCAAGGTCCTGCTGTACATG-GCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtatctgccagccctgcagttggcttctttgttttactaaaaaatagGCTTCATCAAGGTGCTGCTGTATATGCGCCTTCATGACCATCATGATCAAGGTGCACACATTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtggggtgggccttgtctttgtcactccgatattcgtcttcatgtcacac Alignment from GeneWise GCTTCATCAAGGTCCTGCTGTACATG-GCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgtatctgccagccctgcagttggcttctttgttttactaaaaaatagGCTTCATCAAGGTGCTGCTGTATATGCGCCTTCATGACCATCATGATCAAGGTGCACACATTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtggggtgggccttgtctttgtcactccgatattcgtcttcatgtcacac #### Syvn1_ID1392_11 --> 2 - 1 Original Alignment tcCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATG-GGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAg gtggtactgacagctgagctttgttctcgcttaccagaccctctctgcagtcCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCAATGCGGTCCCTTTCCGCCTGTCCCACCTCCCCCAAGTTCTGGAAAGGCTGCTGCGGCTCCACCCACCAGTACAggcaagttctgtgcatgccagggtagatagtggtggccagcaacatctgga Alignment from CESAR tcCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATG-GGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAg gtggtactgacagctgagctttgttctcgcttaccagaccctctctgcagtcCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCAATGCGGTCCCTTTCCGCCTGTCCCACCTCCCCCAAGTTCTGGAAAGGCTGCTGCGGCTCCACCCACCAGTACAggcaagttctgtgcatgccagggtagatagtggtggccagcaacatctgga Alignment from Spaln_aa2Genome TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATG-GGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG gtggtactgacagctgagctttgttctcgcttaccagaccctctctgcagTCCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCAATGcGGTCCCTTTCCGCCTGTCCCACCTCCCCCAAGTTCTGGAAAGGCTGCTGCGGCTCCACCCACCAGTACAGgcaagttctgtgcatgccagggtagatagtggtggccagcaacatctgga Alignment from Spaln_nt2Genome TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATG-GGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG gtggtactgacagctgagctttgttctcgcttaccagaccctctctgcagTCCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCAATGCGGTCCCTTTCCGCCTGTCCCACCTCCCCCAAGTTCTGGAAAGGCTGCTGCGGCTCCACCCACCAGTACAGgcaagttctgtgcatgccagggtagatagtggtggccagcaacatctgga Alignment from Pairagon TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATG-GGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG gtggtactgacagctgagctttgttctcgcttaccagaccctctctgcagTCCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCAATGCGGTCCCTTTCCGCCTGTCCCACCTCCCCCAAGTTCTGGAAAGGCTGCTGCGGCTCCACCCACCAGTACAGgcaagttctgtgcatgccagggtagatagtggtggccagcaacatctgga Alignment from Exonerate_protein2genome TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATG-GGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG gtggtactgacagctgagctttgttctcgcttaccagaccctctctgcagTCCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCAATGCGGTCCCTTTCCGCCTGTCCCACCTCCCCCAAGTTCTGGAAAGGCTGCTGCGGCTCCACCCACCAGTACAGgcaagttctgtgcatgccagggtagatagtggtggccagcaacatctgga Alignment from Exonerate_coding2genome TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCAATG-GGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACAG gtggtactgacagctgagctttgttctcgcttaccagaccctctctgcagTCCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCAATGCGGTCCCTTTCCGCCTGTCCCACCTCCCCCAAGTTCTGGAAAGGCTGCTGCGGCTCCACCCACCAGTACAGgcaagttctgtgcatgccagggtagatagtggtggccagcaacatctgga Alignment from GeneWise TCCCCCAGGGCCTCCTGCCTCCTTTTCCTCCAGGCATGTTCCCACTGTGGCCCCCA-ATGGGTCCCTTTCCACCTGTCCCGCCTCCCCCAAGCTCAGGAGAGGCTGCGGCCCCTCCACCCACCAGTACA---------G gtggtactgacagctgagctttgttctcgcttaccagaccctctctgcagTCCCCCAGGGCCTCCTGCCATCTTTTCCTCCAGGCATGTTCCCACTATGGCCCCCAATGCGGTCCCTTTCCGCCTGTCCCACCTCCCCCAAGTTCTGGAAAGGCTGCTGCGGCTCCACCCACCAGTACAGGCAAGTTCTgtgcatgccagggtagatagtggtggccagcaacatctgga #### Syvn1_ID1394_13 --> 2 - 2 Original Alignment ccTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGA-GCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGgg gatgtggaatactgaggcccaggtagctctagcagcctacctttttacagccTTCCCCCCAATGCCAGTGCCACCTGCAGGATTTGCTGGTCTAACGCCGGAGGAGTTGCGACGCACTAGAAGGCCATGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGgggtaaacaagtatattcaattgcacattctcctgtaaccagaccacctatc Alignment from CESAR ccTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGA-GCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGgg gatgtggaatactgaggcccaggtagctctagcagcctacctttttacagccTTCCCCCCAATGCCAGTGCCACCTGCAGGATTTGCTGGTCTAACGCCGGAGGAGTTGCGACGCACTAGAAGGCCATGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGgggtaaacaagtatattcaattgcacattctcctgtaaccagaccacctatc Alignment from Spaln_aa2Genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGA-GCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG gatgtggaatactgaggcccaggtagctctagcagcctacctttttacagCCTTCCCCCCAATGCCAGTGCCACCTGCAGGATTTGCTGGTCTAACGCCGGAGGAGTTGCGAcGCACTAGAAGGCCATGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGGGgtaaacaagtatattcaattgcacattctcctgtaaccagaccacctatc Alignment from Spaln_nt2Genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGA-GCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG gatgtggaatactgaggcccaggtagctctagcagcctacctttttacagCCTTCCCCCCAATGCCAGTGCCACCTGCAGGATTTGCTGGTCTAACGCCGGAGGAGTTGCGACGCACTAGAAGGCCATGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGGGgtaaacaagtatattcaattgcacattctcctgtaaccagaccacctatc Alignment from Pairagon CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGA-GCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG gatgtggaatactgaggcccaggtagctctagcagcctacctttttacagCCTTCCCCCCAATGCCAGTGCCACCTGCAGGATTTGCTGGTCTAACGCCGGAGGAGTTGCGACGCACTAGAAGGCCATGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGGGgtaaacaagtatattcaattgcacattctcctgtaaccagaccacctatc Alignment from Exonerate_protein2genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGA-GCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG gatgtggaatactgaggcccaggtagctctagcagcctacctttttacagCCTTCCCCCCAATGCCAGTGCCACCTGCAGGATTTGCTGGTCTAACGCCGGAGGAGTTGCGACGCACTAGAAGGCCATGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGGGgtaaacaagtatattcaattgcacattctcctgtaaccagaccacctatc Alignment from Exonerate_coding2genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGA-GCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG gatgtggaatactgaggcccaggtagctctagcagcctacctttttacagCCTTCCCCCCAATGCCAGTGCCACCTGCAGGATTTGCTGGTCTAACGCCGGAGGAGTTGCGACGCACTAGAAGGCCATGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGGGgtaaacaagtatattcaattgcacattctcctgtaaccagaccacctatc Alignment from GeneWise -------------------------------------------------GCCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGA-GCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG GATGTGGAATACTGAGGCCCAGGTAGCTCTAGCAGCCTACCTTTTTACAGCCTTCCCCCCAATGCCAGTGCCACCTGCAGGATTTGCTGGTCTAACGCCGGAGGAGTTGCGACGCACTAGAAGGCCATGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGGGgtaaacaagtatattcaattgcacattctcctgtaaccagaccacctatc #### Syvn1_ID1395_14 --> 1 - 1 Original Alignment gCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCC-AGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTg cagcaatcccagaaggccaaggttgggacccgtgtgtttatcctccacaggCCCCCAAGGCCAGCCACCTCTGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATCTGCTGCACCTTCCAGTAGTGCTCCACAGCTCCGAGGCTCCAACTCCCTCCCCGGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTggtgagttagaagaagaataggcctgcacaatctaggtggcattatggctt Alignment from CESAR gCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCC-AGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTg cagcaatcccagaaggccaaggttgggacccgtgtgtttatcctccacaggCCCCCAAGGCCAGCCACCTCTGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATCTGCTGCACCTTCCAGTAGTGCTCCACAGCTCCGAGGCTCCAACTCCCTCCCCGGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTggtgagttagaagaagaataggcctgcacaatctaggtggcattatggctt Alignment from Spaln_aa2Genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCC-AGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG cagcaatcccagaaggccaaggttgggacccgtgtgtttatcctccacagGCCCCCAAGGCCAGCCACCTCTGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATCTGCTGCACCTTCCAGTAGTGCTCCAcAGCTCCGAGGCTCCAACTCCCTCCCCGGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtgagttagaagaagaataggcctgcacaatctaggtggcattatggctt Alignment from Spaln_nt2Genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCC-CAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG cagcaatcccagaaggccaaggttgggacccgtgtgtttatcctccacagGCCCCCAAGGCCAGCCACCTCTGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATCTGCTGCACCTTCCAGTAGTGCTCCACAGCTCCGAGGCTCCAACTCCCTCCCCGGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtgagttagaagaagaataggcctgcacaatctaggtggcattatggctt Alignment from Pairagon GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCC-CAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG cagcaatcccagaaggccaaggttgggacccgtgtgtttatcctccacagGCCCCCAAGGCCAGCCACCTCTGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATCTGCTGCACCTTCCAGTAGTGCTCCACAGCTCCGAGGCTCCAACTCCCTCCCCGGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtgagttagaagaagaataggcctgcacaatctaggtggcattatggctt Alignment from Exonerate_protein2genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCC-AGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG cagcaatcccagaaggccaaggttgggacccgtgtgtttatcctccacagGCCCCCAAGGCCAGCCACCTCTGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATCTGCTGCACCTTCCAGTAGTGCTCCACAGCTCCGAGGCTCCAACTCCCTCCCCGGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtgagttagaagaagaataggcctgcacaatctaggtggcattatggctt Alignment from Exonerate_coding2genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCC-AGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG cagcaatcccagaaggccaaggttgggacccgtgtgtttatcctccacagGCCCCCAAGGCCAGCCACCTCTGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATCTGCTGCACCTTCCAGTAGTGCTCCACAGCTCCGAGGCTCCAACTCCCTCCCCGGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtgagttagaagaagaataggcctgcacaatctaggtggcattatggctt Alignment from GeneWise GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCC-AGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG cagcaatcccagaaggccaaggttgggacccgtgtgtttatcctccacagGCCCCCAAGGCCAGCCACCTCTGTGAACCACACTGAAGAAACTGCATCTACTGTGGTATCTGCTGCACCTTCCAGTAGTGCTCCACAGCTCCGAGGCTCCAACTCCCTCCCCGGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtgagttagaagaagaataggcctgcacaatctaggtggcattatggctt #### Tbc1d10c_ID398_6 --> 0 - 0 Original Alignment GAGGCCTTCTGGTGCTTGGTGCAGATC-TGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG tccttagtaagactcatacccatgcatttgggtcttcttctctttcccagGAGGCCTTCTGGTGCTTAGTGCAGATCCTGTGAGGTTTACCTCCCGGGCTACTATGGGCCCCACATGgtaggagcttgggttgacggttgaaaaaaggacactgagccatttgaagc Alignment from CESAR GAGGCCTTCTGGTGCTTGGTGCAGATC-TGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG tccttagtaagactcatacccatgcatttgggtcttcttctctttcccagGAGGCCTTCTGGTGCTTAGTGCAGATCCTGTGAGGTTTACCTCCCGGGCTACTATGGGCCCCACATGgtaggagcttgggttgacggttgaaaaaaggacactgagccatttgaagc Alignment from Spaln_aa2Genome GAGGCCTTCTGGTGCTTGGTGCAGATC-TGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG tccttagtaagactcatacccatgcatttgggtcttcttctctttcccagGAGGCCTTCTGGTGCTTAGTGCAGATCcTGTGAGGTTTACCTCCCGGGCTACTATGGGCCCCACATGgtaggagcttgggttgacggttgaaaaaaggacactgagccatttgaagc Alignment from Spaln_nt2Genome GAGGCCTTCTGGTGCTTGGTGCAGAT-CTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG tccttagtaagactcatacccatgcatttgggtcttcttctctttcccagGAGGCCTTCTGGTGCTTAGTGCAGATCCTGTGAGGTTTACCTCCCGGGCTACTATGGGCCCCACATGgtaggagcttgggttgacggttgaaaaaaggacactgagccatttgaagc Alignment from Pairagon GAGGCCTTCTGGTGCTTGGTGCAGAT-CTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG tccttagtaagactcatacccatgcatttgggtcttcttctctttcccagGAGGCCTTCTGGTGCTTAGTGCAGATCCTGTGAGGTTTACCTCCCGGGCTACTATGGGCCCCACATGgtaggagcttgggttgacggttgaaaaaaggacactgagccatttgaagc Alignment from Exonerate_protein2genome GAGGCCTTCTGGTGCTTGGTGCAGATC-TGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG tccttagtaagactcatacccatgcatttgggtcttcttctctttcccagGAGGCCTTCTGGTGCTTAGTGCAGATCCTGTGAGGTTTACCTCCCGGGCTACTATGGGCCCCACATGgtaggagcttgggttgacggttgaaaaaaggacactgagccatttgaagc Alignment from Exonerate_coding2genome GAGGCCTTCTGGTGCTTGGTGCAGATC-TGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG tccttagtaagactcatacccatgcatttgggtcttcttctctttcccagGAGGCCTTCTGGTGCTTAGTGCAGATCCTGTGAGGTTTACCTCCCGGGCTACTATGGGCCCCACATGgtaggagcttgggttgacggttgaaaaaaggacactgagccatttgaagc Alignment from GeneWise GAGGCCTTCTGGTGCTTGGTGCAG-ATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG tccttagtaagactcatacccatgcatttgggtcttcttctctttcccagGAGGCCTTCTGGTGCTTAGTGCAGATCCTGTGAGGTTTACCTCCCGGGCTACTATGGGCCCCACATGgtaggagcttgggttgacggttgaaaaaaggacactgagccatttgaagc #### Tbc1d10c_ID399_5 --> 1 - 0 Original Alignment gCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGATAC------TGCCAGGCTCAGGGACCTGTAGCTGCTGTG-CTGCTCATGCATCTACCCCCAGAG agatgggaggatgccagggtggctagatattcccatctccgcccttccaggCAGCAGGGGCTACTGCAGGTTATGAAAGCTTACAACCTACACCGCCCAGAACAAGGATATTGTCACTGTCAGGCCCAGGGACCTGTAGCTGCTGTGCCTTCTCATGCATCTACCACCAGAGgtaagcaaccctggacctgatctgagaccctcaatccctaatgatgcaca Alignment from CESAR gCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGATACTGC------CAGGCTCAGGGACCTGTAGCTGCTGTG-CTGCTCATGCATCTACCCCCAGAG agatgggaggatgccagggtggctagatattcccatctccgcccttccaggCAGCAGGGGCTACTGCAGGTTATGAAAGCTTACAACCTACACCGCCCAGAACAAGGATATTGTCACTGTCAGGCCCAGGGACCTGTAGCTGCTGTGCCTTCTCATGCATCTACCACCAGAGgtaagcaaccctggacctgatctgagaccctcaatccctaatgatgcaca Alignment from Spaln_aa2Genome GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGATAC------TGCCAGGCTCAGGGACCTGTAGCTGCTGTG-CTGCTCATGCATCTACCCCCAGAG agatgggaggatgccagggtggctagatattcccatctccgcccttccagGCAGCAGGGGCTACTGCAGGTTATGAAAGCTTACAACCTACACCGCCCAGAACAAGGATATTGTCACTGTCAGGCCCAGGGACCTGTAGCTGCTGTGcCTTCTCATGCATCTACCACCAGAGgtaagcaaccctggacctgatctgagaccctcaatccctaatgatgcaca Alignment from Spaln_nt2Genome GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGATA------CTGCCAGGCTCAGGGACCTGTAGCTGCTGTGC-TGCTCATGCATCTACCCCCAGAG agatgggaggatgccagggtggctagatattcccatctccgcccttccagGCAGCAGGGGCTACTGCAGGTTATGAAAGCTTACAACCTACACCGCCCAGAACAAGGATATTGTCACTGTCAGGCCCAGGGACCTGTAGCTGCTGTGCCTTCTCATGCATCTACCACCAGAGgtaagcaaccctggacctgatctgagaccctcaatccctaatgatgcaca Alignment from Pairagon GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGAT------ACTGCCAGGCTCAGGGACCTGTAGCTGCTGTG-CTGCTCATGCATCTACCCCCAGAG agatgggaggatgccagggtggctagatattcccatctccgcccttccagGCAGCAGGGGCTACTGCAGGTTATGAAAGCTTACAACCTACACCGCCCAGAACAAGGATATTGTCACTGTCAGGCCCAGGGACCTGTAGCTGCTGTGCCTTCTCATGCATCTACCACCAGAGgtaagcaaccctggacctgatctgagaccctcaatccctaatgatgcaca Alignment from Exonerate_protein2genome GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGATAC------TGCCAGGCTCAGGGACCTGTAGCTGCTGTG-CTGCTCATGCATCTACCCCCAGAG agatgggaggatgccagggtggctagatattcccatctccgcccttccagGCAGCAGGGGCTACTGCAGGTTATGAAAGCTTACAACCTACACCGCCCAGAACAAGGATATTGTCACTGTCAGGCCCAGGGACCTGTAGCTGCTGTGCCTTCTCATGCATCTACCACCAGAGgtaagcaaccctggacctgatctgagaccctcaatccctaatgatgcaca Alignment from Exonerate_coding2genome GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGATAC------TGCCAGGCTCAGGGACCTGTAGCTGCTGTG-CTGCTCATGCATCTACCCCCAGAG agatgggaggatgccagggtggctagatattcccatctccgcccttccagGCAGCAGGGGCTACTGCAGGTTATGAAAGCTTACAACCTACACCGCCCAGAACAAGGATATTGTCACTGTCAGGCCCAGGGACCTGTAGCTGCTGTGCCTTCTCATGCATCTACCACCAGAGgtaagcaaccctggacctgatctgagaccctcaatccctaatgatgcaca Alignment from GeneWise GCAGCAGGGGCTGCTGCAGGTTCTCAAGGCCTACACCCTGTACCGGCCAGAGCAGGGATACTGC------CAGGCTCAGGGACCTGTAGCTGCT-GTGCTGCTCATGCATCTACCCCCAGAG agatgggaggatgccagggtggctagatattcccatctccgcccttccagGCAGCAGGGGCTACTGCAGGTTATGAAAGCTTACAACCTACACCGCCCAGAACAAGGATATTGTCACTGTCAGGCCCAGGGACCTGTAGCTGCTGTGCCTTCTCATGCATCTACCACCAGAGgtaagcaaccctggacctgatctgagaccctcaatccctaatgatgcaca #### Tbc1d10c_ID400_4 --> 0 - 2 Original Alignment GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCT-CTGCATGAGATGTTTGTGTCACCCCAGGGACACgg ataactgctagctacccagcctcttatattactctgtgttttccttctagGAACTGGCATCAGCCCCTGGGGACCCGCAGTGGATGGAGGCCACTGGCAGGGACTTGCACCAACAGTTTCCCCTTGCATGAGATGTTTGTGTCGCCTCAAGGACATgggtaatatgtcaggagtctactcagaccataatctccattgtccacagatg Alignment from CESAR GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCT-CTGCATGAGATGTTTGTGTCACCCCAGGGACACgg ataactgctagctacccagcctcttatattactctgtgttttccttctagGAACTGGCATCAGCCCCTGGGGACCCGCAGTGGATGGAGGCCACTGGCAGGGACTTGCACCAACAGTTTCCCCTTGCATGAGATGTTTGTGTCGCCTCAAGGACATgggtaatatgtcaggagtctactcagaccataatctccattgtccacagatg Alignment from Spaln_aa2Genome GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCTG-CATGAGATGTTTGTGTCACCCCAGGGACACGG ataactgctagctacccagcctcttatattactctgtgttttccttctagGAACTGGCATCAGCCCCTGGGGACCCGCAGTGGATGGAGGCCACTGGCAGGGACTTGCACCAACAGTTTCCCCTTgCATGAGATGTTTGTGTCGCCTCAAGGACATGGgtaatatgtcaggagtctactcagaccataatctccattgtccacagatg Alignment from Spaln_nt2Genome GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTCT-GCATGAGATGTTTGTGTCACCCCAGGGACACGG ataactgctagctacccagcctcttatattactctgtgttttccttctagGAACTGGCATCAGCCCCTGGGGACCCGCAGTGGATGGAGGCCACTGGCAGGGACTTGCACCAACAGTTTCCCCTTGCATGAGATGTTTGTGTCGCCTCAAGGACATGGgtaatatgtcaggagtctactcagaccataatctccattgtccacagatg Alignment from Pairagon GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCTC-TGCATGAGATGTTTGTGTCACCCCAGGGACACGG ataactgctagctacccagcctcttatattactctgtgttttccttctagGAACTGGCATCAGCCCCTGGGGACCCGCAGTGGATGGAGGCCACTGGCAGGGACTTGCACCAACAGTTTCCCCTTGCATGAGATGTTTGTGTCGCCTCAAGGACATGGgtaatatgtcaggagtctactcagaccataatctccattgtccacagatg Alignment from Exonerate_protein2genome GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAG-TTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG ataactgctagctacccagcctcttatattactctgtgttttccttctagGAACTGGCATCAGCCCCTGGGGACCCGCAGTGGATGGAGGCCACTGGCAGGGACTTGCACCAACAGTTTCCCCTTGCATGAGATGTTTGTGTCGCCTCAAGGACATGGgtaatatgtcaggagtctactcagaccataatctccattgtccacagatg Alignment from Exonerate_coding2genome GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAG-TTTCCTCTGCATGAGATGTTTGTGTCACCCCAGGGACACGG ataactgctagctacccagcctcttatattactctgtgttttccttctagGAACTGGCATCAGCCCCTGGGGACCCGCAGTGGATGGAGGCCACTGGCAGGGACTTGCACCAACAGTTTCCCCTTGCATGAGATGTTTGTGTCGCCTCAAGGACATGGgtaatatgtcaggagtctactcagaccataatctccattgtccacagatg Alignment from GeneWise GAGCTGGCAGCAGCCCCCGGGGACCCGCAGTGGATGGAGACCATTGGCAGAGACTTGCACCGTCAGTTTCCT-CTGCATGAGATGTTTGTGTCACCCCAGGGACACGG ataactgctagctacccagcctcttatattactctgtgttttccttctagGAACTGGCATCAGCCCCTGGGGACCCGCAGTGGATGGAGGCCACTGGCAGGGACTTGCACCAACAGTTTCCCCTTGCATGAGATGTTTGTGTCGCCTCAAGGACATGGgtaatatgtcaggagtctactcagaccataatctccattgtccacagatg #### Tbc1d10c_ID401_3 --> 0 - 0 Original Alignment GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGG-CCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG cagagtgtgagagcagaggaacccctgaactttttattgtgaccaaccagGTAAAGATACAGTGCCGCAAGGGCATTCCCACTGTCTTGCGTGCCCGGTGCTGGCCCCCTCCTGTGTGGCGCCCGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtaaggaagctaggaggtgcccttcaagaagtctatttatggagagcacc Alignment from CESAR GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCC-CTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG cagagtgtgagagcagaggaacccctgaactttttattgtgaccaaccagGTAAAGATACAGTGCCGCAAGGGCATTCCCACTGTCTTGCGTGCCCGGTGCTGGCCCCCTCCTGTGTGGCGCCCGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtaaggaagctaggaggtgcccttcaagaagtctatttatggagagcacc Alignment from Spaln_aa2Genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGG-CCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG cagagtgtgagagcagaggaacccctgaactttttattgtgaccaaccagGTAAAGATACAGTGCCGCAAGGGCATTCCCACTGTCTTGCGTGCCCGGTGCTGGcCCCCTCCTGTGTGGCGCCCGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtaaggaagctaggaggtgcccttcaagaagtctatttatggagagcacc Alignment from Spaln_nt2Genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCCC-TCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG cagagtgtgagagcagaggaacccctgaactttttattgtgaccaaccagGTAAAGATACAGTGCCGCAAGGGCATTCCCACTGTCTTGCGTGCCCGGTGCTGGCCCCCTCCTGTGTGGCGCCCGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtaaggaagctaggaggtgcccttcaagaagtctatttatggagagcacc Alignment from Pairagon GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGG-CCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG cagagtgtgagagcagaggaacccctgaactttttattgtgaccaaccagGTAAAGATACAGTGCCGCAAGGGCATTCCCACTGTCTTGCGTGCCCGGTGCTGGCCCCCTCCTGTGTGGCGCCCGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtaaggaagctaggaggtgcccttcaagaagtctatttatggagagcacc Alignment from Exonerate_protein2genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGG-CCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG cagagtgtgagagcagaggaacccctgaactttttattgtgaccaaccagGTAAAGATACAGTGCCGCAAGGGCATTCCCACTGTCTTGCGTGCCCGGTGCTGGCCCCCTCCTGTGTGGCGCCCGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtaaggaagctaggaggtgcccttcaagaagtctatttatggagagcacc Alignment from Exonerate_coding2genome GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGG-CCCCTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG cagagtgtgagagcagaggaacccctgaactttttattgtgaccaaccagGTAAAGATACAGTGCCGCAAGGGCATTCCCACTGTCTTGCGTGCCCGGTGCTGGCCCCCTCCTGTGTGGCGCCCGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtaaggaagctaggaggtgcccttcaagaagtctatttatggagagcacc Alignment from GeneWise GTAAAGATCCAGTGCCGCAAGGGCATCCCCTCAGCCCTGCGTGCCCGGTGTTGGCCC-CTCCTGTGTGGGGCCCGGATGTGTCAGAAGAACAACCCTGGCACCTACCAG cagagtgtgagagcagaggaacccctgaactttttattgtgaccaaccagGTAAAGATACAGTGCCGCAAGGGCATTCCCACTGTCTTGCGTGCCCGGTGCTGGCCCCCTCCTGTGTGGCGCCCGGATGTGTCAGAAGAATAACCCTGGCACATATCAGgtaaggaagctaggaggtgcccttcaagaagtctatttatggagagcacc #### Tcirg1_ID169_18 --> 2 - 2 Original Alignment agCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTG-TTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACtg gtgagggtagtgacaggcattctcaagttgtctcttttttttcttctcagagCTGTCTGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTCGGCATGGGCCGAGAGATTGGGGTGGCGGCTGTGGTGCTGGTCCCTGTGCTTTGCTGCCTTTGCTGTATTAACTGTGGCCATTCTGTTAGTGATGGAGGGTCTCTTAGCCTTCTTGCATGCTCTGCGGTTGCATtggtaagtgcctatgtagtgggatttggcagggaacatgggtggatttgtcc Alignment from CESAR agCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTG-TTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACtg gtgagggtagtgacaggcattctcaagttgtctcttttttttcttctcagagCTGTCTGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTCGGCATGGGCCGAGAGATTGGGGTGGCGGCTGTGGTGCTGGTCCCTGTGCTTTGCTGCCTTTGCTGTATTAACTGTGGCCATTCTGTTAGTGATGGAGGGTCTCTTAGCCTTCTTGCATGCTCTGCGGTTGCATtggtaagtgcctatgtagtgggatttggcagggaacatgggtggatttgtcc Alignment from Spaln_aa2Genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTG-TTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG gtgagggtagtgacaggcattctcaagttgtctcttttttttcttctcagAGCTGTCTGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTCGGCATGGGCCGAGAGATTGGGGTGGCGGCTGTGGTGCTGGTCCCTGTGcTTTGCTGCCTTTGCTGTATTAACTGTGGCCATTCTGTTAGTGATGGAGGGTCTCTTAGCCTTCTTGCATGCTCTGCGGTTGCATTGgtaagtgcctatgtagtgggatttggcagggaacatgggtggatttgtcc Alignment from Spaln_nt2Genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTG-TTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG gtgagggtagtgacaggcattctcaagttgtctcttttttttcttctcagAGCTGTCTGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTCGGCATGGGCCGAGAGATTGGGGTGGCGGCTGTGGTGCTGGTCCCTGTGCTTTGCTGCCTTTGCTGTATTAACTGTGGCCATTCTGTTAGTGATGGAGGGTCTCTTAGCCTTCTTGCATGCTCTGCGGTTGCATTGgtaagtgcctatgtagtgggatttggcagggaacatgggtggatttgtcc Alignment from Pairagon AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTG-TTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG gtgagggtagtgacaggcattctcaagttgtctcttttttttcttctcagAGCTGTCTGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTCGGCATGGGCCGAGAGATTGGGGTGGCGGCTGTGGTGCTGGTCCCTGTGCTTTGCTGCCTTTGCTGTATTAACTGTGGCCATTCTGTTAGTGATGGAGGGTCTCTTAGCCTTCTTGCATGCTCTGCGGTTGCATTGgtaagtgcctatgtagtgggatttggcagggaacatgggtggatttgtcc Alignment from Exonerate_protein2genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTG-TTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG gtgagggtagtgacaggcattctcaagttgtctcttttttttcttctcagAGCTGTCTGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTCGGCATGGGCCGAGAGATTGGGGTGGCGGCTGTGGTGCTGGTCCCTGTGCTTTGCTGCCTTTGCTGTATTAACTGTGGCCATTCTGTTAGTGATGGAGGGTCTCTTAGCCTTCTTGCATGCTCTGCGGTTGCATTGgtaagtgcctatgtagtgggatttggcagggaacatgggtggatttgtcc Alignment from Exonerate_coding2genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCTGTG-TTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG gtgagggtagtgacaggcattctcaagttgtctcttttttttcttctcagAGCTGTCTGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTCGGCATGGGCCGAGAGATTGGGGTGGCGGCTGTGGTGCTGGTCCCTGTGCTTTGCTGCCTTTGCTGTATTAACTGTGGCCATTCTGTTAGTGATGGAGGGTCTCTTAGCCTTCTTGCATGCTCTGCGGTTGCATTGgtaagtgcctatgtagtgggatttggcagggaacatgggtggatttgtcc Alignment from GeneWise AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCTGTGGTGCTGGTCCCT-GTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG gtgagggtagtgacaggcattctcaagttgtctcttttttttcttctcagAGCTGTCTGAGGTCCTTTGGGCAATGGTGATGCACATAGGCCTCGGCATGGGCCGAGAGATTGGGGTGGCGGCTGTGGTGCTGGTCCCTGTGCTTTGCTGCCTTTGCTGTATTAACTGTGGCCATTCTGTTAGTGATGGAGGGTCTCTTAGCCTTCTTGCATGCTCTGCGGTTGCATTGgtaagtgcctatgtagtgggatttggcagggaacatgggtggatttgtcc #### Tcirg1_ID173_14 --> 1 - 0 Original Alignment gCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTT-GTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agacttgcctcatcctggcgtgagcagtccctggaattctgccctggtaggCACTTTGGCCAGGCCCACCGGCTGCTGCTTGGGACATTGTCAGAGCTCATCTTCCTCCTGGGCCTC------TACCTTCGTGTTCCTGATTGTCTACAAGTGGGTGAATGTCTCCGCAACTAGTGCTGCCTCTGCCCCC------ATTATTCACTTCATCAAT---TTCCTCTTCTCCCAAAACCCC---AATCATCTGCTCTTCCATGGGCAGgtgagaggtggctgacctgctcactggggttgttctagtcccttgtatcc Alignment from CESAR gCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTT-GTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agacttgcctcatcctggcgtgagcagtccctggaattctgccctggtaggCACTTTGGCCAGGCCCACCGGCTGCTGCTTGGGACATTGTCAGAGCTCATCTTCCTCCTGGGCCTC------TACCTTCGTGTTCCTGATTGTCTACAAGTGGGTGAATGTCTCCGCAACTAGTGCTGCCTCTGCCCCC------ATTATTCACTTCATCAAT---TTCCTCTTCTCCCAAAACCCC---AATCATCTGCTCTTCCATGGGCAGgtgagaggtggctgacctgctcactggggttgttctagtcccttgtatcc Alignment from Spaln_aa2Genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agacttgcctcatcctggcgtgagcagtccctggaattctgccctggtagGCACTTTGGCCAGGCCCACCGGCTGCTGCTTGGGACATTGTCAGAGCTCATCTTCCTCCTGGGCCTCTACC-----TTCGTGTTCCTGATTGTCTACAAGTGGGTGAATGTCTCCGCAACTAGTGCTGCCTCTGCCCCC------ATTATTCACTTCATCAAT---TTCCTCTTCTCCCAAAACCCC---AATCATCTGCTCTTCCATGGGCAGgtgagaggtggctgacctgctcactggggttgttctagtcccttgtatcc Alignment from Spaln_nt2Genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTT-GTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agacttgcctcatcctggcgtgagcagtccctggaattctgccctggtagGCACTTTGGCCAGGCCCACCGGCTGCTGCTTGGGACATTGTCAGAGCTCATCTTCCTCCTGGGCCT------CTACCTTCGTGTTCCTGATTGTCTACAAGTGGGTGAATGTCTCCGCAACTAGTGCTGCCTCTGCCCCCA------TTATTCACTTCATCAAT---TTCCTCTTCTCCCAAAACC---CCAATCATCTGCTCTTCCATGGGCAGgtgagaggtggctgacctgctcactggggttgttctagtcccttgtatcc Alignment from Pairagon GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTT-GTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agacttgcctcatcctggcgtgagcagtccctggaattctgccctggtagGCACTTTGGCCAGGCCCACCGGCTGCTGCTTGGGACATTGTCAGAGCTCATCTTCCTCCTGGGCCT------CTACCTTCGTGTTCCTGATTGTCTACAAGTGGGTGAATGTCTCCGCAACTAGTGCTGCCTCTGCCCCCA------TTATTCACTTCATCAAT---TTCCTCTTCTCCCAAAACC---CCAATCATCTGCTCTTCCATGGGCAGgtgagaggtggctgacctgctcactggggttgttctagtcccttgtatcc Alignment from Exonerate_protein2genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTT-GTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agacttgcctcatcctggcgtgagcagtccctggaattctgccctggtagGCACTTTGGCCAGGCCCACCGGCTGCTGCTTGGGACATTGTCAGAGCTCATCTTCCTCCTGGGCCTC------TACCTTCGTGTTCCTGATTGTCTACAAGTGGGTGAATGTCTCCGCAACTAGTGCTGCCTCTGCCCCC------ATTATTCACTTCATCAAT---TTCCTCTTCTCCCAAAACCCC---AATCATCTGCTCTTCCATGGGCAGgtgagaggtggctgacctgctcactggggttgttctagtcccttgtatcc Alignment from Exonerate_coding2genome GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTT-GTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agacttgcctcatcctggcgtgagcagtccctggaattctgccctggtagGCACTTTGGCCAGGCCCACCGGCTGCTGCTTGGGACATTGTCAGAGCTCATCTTCCTCCTGGGCCTC------TACCTTCGTGTTCCTGATTGTCTACAAGTGGGTGAATGTCTCCGCAACTAGTGCTGCCTCTGCCCCC------ATTATTCACTTCATCAAT---TTCCTCTTCTCCCAAAACCCC---AATCATCTGCTCTTCCATGGGCAGgtgagaggtggctgacctgctcactggggttgttctagtcccttgtatcc Alignment from GeneWise GCACTTTGGCCAGGCCCACCGGCTACTGCTGGAGACCTTGCCTGAGCTCATCTTCCTGCTGGGTCTCTTTGGCTACCTTGTGTTCCTCATTGTCTACAAGTGGGTGAATGTCTCAGCTGCTAGCGCCTCCTCGGCCCCCAGTATCCTCATTCACTTCATCAATATGTTCCTCTTCTCTCAAAACCCCACCAATCATCTGCTCTTCCATGGGCAG agacttgcctcatcctggcgtgagcagtccctggaattctgccctggtagGCACTTTGGCCAGGCCCACCGGCTGCTGCTTGGGACATTGTCAGAGCTCATCTTCCTCCTGGGCCTCTACC--TTC---GTGTTCCTGATTGTCTACAAGTGGGTGAATGTCTCCGCAACTAGTGCTGCCTCTGCCCCC------ATTATTCACTTCATCAAT---TTCCTCTTCTCCCAAAACCCC---AATCATCTGCTCTTCCATGGGCAGgtgagaggtggctgacctgctcactggggttgttctagtcccttgtatcc #### Tcirg1_ID174_13 --> 0 - 2 Original Alignment ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAG-ATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACgt ggcaggatccagcatgttgccaagtgttatgttttgaattgtgcaagcagCTCTGGAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGCATGTCAGTCATCCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCATgtgtaagataaggggtgtatgcatgggtagtatgtgcccagacttgcctcat Alignment from CESAR ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAG-ATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACgt ggcaggatccagcatgttgccaagtgttatgttttgaattgtgcaagcagCTCTGGAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGCATGTCAGTCATCCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCATgtgtaagataaggggtgtatgcatgggtagtatgtgcccagacttgcctcat Alignment from Spaln_aa2Genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAG-ATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcaggatccagcatgttgccaagtgttatgttttgaattgtgcaagcagCTCTGGAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGcATGTCAGTCATCCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCATGTgtaagataaggggtgtatgcatgggtagtatgtgcccagacttgcctcat Alignment from Spaln_nt2Genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAG-ATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcaggatccagcatgttgccaagtgttatgttttgaattgtgcaagcagCTCTGGAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGCATGTCAGTCATCCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCATGTgtaagataaggggtgtatgcatgggtagtatgtgcccagacttgcctcat Alignment from Pairagon ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAG-ATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcaggatccagcatgttgccaagtgttatgttttgaattgtgcaagcagCTCTGGAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGCATGTCAGTCATCCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCATGTgtaagataaggggtgtatgcatgggtagtatgtgcccagacttgcctcat Alignment from Exonerate_protein2genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAG-ATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcaggatccagcatgttgccaagtgttatgttttgaattgtgcaagcagCTCTGGAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGCATGTCAGTCATCCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCATGTgtaagataaggggtgtatgcatgggtagtatgtgcccagacttgcctcat Alignment from Exonerate_coding2genome ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAG-ATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcaggatccagcatgttgccaagtgttatgttttgaattgtgcaagcagCTCTGGAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGCATGTCAGTCATCCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCATGTgtaagataaggggtgtatgcatgggtagtatgtgcccagacttgcctcat Alignment from GeneWise ATCTGGAGCCTGGCCACGAACCACCTGAGCTTTCTCAACTCCTTCAAGATG-AAGATGTCTGTCATCCTTGGGGTCACGCACATGGCCTTTGGGGTGTTCCTCAGCATCTTCAACCACGT ggcaggatccagcatgttgccaagtgttatgttttgaattgtgcaagcagCTCTGGAGTCTGGCCACAAACCACCTGAGCTTTCTCAACTCCTTCAAGATGAAGCATGTCAGTCATCCTAGGGGTCACACACATGGCCTTTGGGGTTTTCCTCAGCATCTTCAATCATGTgtaagataaggggtgtatgcatgggtagtatgtgcccagacttgcctcat #### Tcirg1_ID175_12 --> 1 - 0 Original Alignment tGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACT-GGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG cagggtacctgacccaatgtatagctcactgcctgcctccccacccccagtGATGAGTATCTATCCCAGCACTCCATGCTAACCTTGAACCCTAACATTACTCGGAGTCCTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtgagtgagcatacgagtgcatgggaaggaggtgcctgggaagacttgtc Alignment from CESAR tGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACT-GGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG cagggtacctgacccaatgtatagctcactgcctgcctccccacccccagtGATGAGTATCTATCCCAGCACTCCATGCTAACCTTGAACCCTAACATTACTCGGAGTCCTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtgagtgagcatacgagtgcatgggaaggaggtgcctgggaagacttgtc Alignment from Spaln_aa2Genome TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACT-GGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG cagggtacctgacccaatgtatagctcactgcctgcctccccacccccagTGATGAGTATCTATCCCAGCACTCCATGCTAACCTTGAACCCTAACATTACTcGGAGTCCTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtgagtgagcatacgagtgcatgggaaggaggtgcctgggaagacttgtc Alignment from Spaln_nt2Genome TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACT-GGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG cagggtacctgacccaatgtatagctcactgcctgcctccccacccccagTGATGAGTATCTATCCCAGCACTCCATGCTAACCTTGAACCCTAACATTACTCGGAGTCCTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtgagtgagcatacgagtgcatgggaaggaggtgcctgggaagacttgtc Alignment from Pairagon ------------------------------------------------AGTGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACT-GGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG CAGGGTACCTGACCCAATGTATAGCTCACTGCCTGCCTCCCCACCCCCAGTGATGAGTATCTATCCCAGCACTCCATGCTAACCTTGAACCCTAACATTACTCGGAGTCCTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtgagtgagcatacgagtgcatgggaaggaggtgcctgggaagacttgtc Alignment from Exonerate_protein2genome TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACT-GGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG cagggtacctgacccaatgtatagctcactgcctgcctccccacccccagTGATGAGTATCTATCCCAGCACTCCATGCTAACCTTGAACCCTAACATTACTCGGAGTCCTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtgagtgagcatacgagtgcatgggaaggaggtgcctgggaagacttgtc Alignment from Exonerate_coding2genome TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATCACT-GGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG cagggtacctgacccaatgtatagctcactgcctgcctccccacccccagTGATGAGTATCTATCCCAGCACTCCATGCTAACCTTGAACCCTAACATTACTCGGAGTCCTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtgagtgagcatacgagtgcatgggaaggaggtgcctgggaagacttgtc Alignment from GeneWise TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCTAACATC-ACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG cagggtacctgacccaatgtatagctcactgcctgcctccccacccccagTGATGAGTATCTATCCCAGCACTCCATGCTAACCTTGAACCCTAACATTACTCGGAGTCCTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtgagtgagcatacgagtgcatgggaaggaggtgcctgggaagacttgtc #### Tcirg1_ID179_8 --> 0 - 0 Original Alignment AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTG-TTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAGgtaagtgcctatgtaaactgaagtctcaccttttccctcttacagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCCTAGGTCGAGTGCAGCAGTTACTGCCTCCATGGCAGGTGCAAATCCATAAGATGAAGGCTGTCTACCTAACCCTCAATCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCGgtaggtatccagcgtcctattggagtacccaatcagcaagacagacacca Alignment from CESAR AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTG-TTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAGgtcagtgcctatgtaaactgaagtctcaccttttccctcttacagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCCTAGGTCGAGTGCAGCAGTTACTGCCTCCATGGCAGGTGCAAATCCATAAGATGAAGGCTGTCTACCTAACCCTCAATCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCGgtaggtatccagcgtcctattggagtacccaatcagcaagacagacacca Alignment from Spaln_aa2Genome AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTG-TTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAGgtaagtgcctatgtaaactgaagtctcaccttttccctcttacagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGcCTAGGTCGAGTGCAGCAGTTACTGCCTCCATGGCAGGTGCAAATCCATAAGATGAAGGCTGTCTACCTAACCCTCAATCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCGgtaggtatccagcgtcctattggagtacccaatcagcaagacagacacca Alignment from Spaln_nt2Genome AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGT-TGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAGgtaagtgcctatgtaaactgaagtctcaccttttccctcttacagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCCTAGGTCGAGTGCAGCAGTTACTGCCTCCATGGCAGGTGCAAATCCATAAGATGAAGGCTGTCTACCTAACCCTCAATCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCGgtaggtatccagcgtcctattggagtacccaatcagcaagacagacacca Alignment from Pairagon AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTG-TTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAGgtaagtgcctatgtaaactgaagtctcaccttttccctcttacagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCCTAGGTCGAGTGCAGCAGTTACTGCCTCCATGGCAGGTGCAAATCCATAAGATGAAGGCTGTCTACCTAACCCTCAATCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCGgtaggtatccagcgtcctattggagtacccaatcagcaagacagacacca Alignment from Exonerate_protein2genome AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTG-TTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAGgtaagtgcctatgtaaactgaagtctcaccttttccctcttacagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCCTAGGTCGAGTGCAGCAGTTACTGCCTCCATGGCAGGTGCAAATCCATAAGATGAAGGCTGTCTACCTAACCCTCAATCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCGgtaggtatccagcgtcctattggagtacccaatcagcaagacagacacca Alignment from Exonerate_coding2genome AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTG-TTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAGgtaagtgcctatgtaaactgaagtctcaccttttccctcttacagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCCTAGGTCGAGTGCAGCAGTTACTGCCTCCATGGCAGGTGCAAATCCATAAGATGAAGGCTGTCTACCTAACCCTCAATCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCGgtaggtatccagcgtcctattggagtacccaatcagcaagacagacacca Alignment from GeneWise AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAG-GTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCGCTGCAGAGCGGCTCA AGGAGgtaagtgcctatgtaaactgaagtctcaccttttccctcttacagGTCTTGGGGGAGACAGACCGGTTCTTAAGCCAAGTGCCTAGGTCGAGTGCAGCAGTTACTGCCTCCATGGCAGGTGCAAATCCATAAGATGAAGGCTGTCTACCTAACCCTCAATCCATGCAGTGTGAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTGTGCTGCAAGGGACCTGCCCACAGTGCAACAGGCCCTACAAAGTGGCTCGgtaggtatccagcgtcctattggagtacccaatcagcaagacagacacca #### Tcirg1_ID182_5 --> 1 - 0 Original Alignment tTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCC-CTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT aggcgaggagaattgaggggaggctgcaagtttttctgttaatataccagcTTTGTGGCAGGTGCAGTGGAGCCCTACAAGGCAGCAGCCCTTAGAGCGCCTGCTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGGAGGACCCAGTGACAgtgaggctaaagggaagactaagatgtttctttaaatacagGGTGAGCCT Alignment from CESAR tTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTG-GAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT aggcgaggagaattgaggggaggctgcaagtttttctgttaatataccagcTTTGTGGCAGGTGCAGTGGAGCCCTACAAGGCAGCAGCCCTTAGAGCGCCTGCTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGGAGGACCCAGTGACAgtgaggctaaagggaagactaacttccgttttcttcctaagGGTGAGCCT Alignment from Spaln_aa2Genome TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCC-CTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT aggcgaggagaattgaggggaggctgcaagtttttctgttaatataccagCTTTGTGGCAGGTGCAGTGGAGCCCTACAAGGCAGCAGCCcTTAGAGCGCCTGCTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGGAGGACCCAGTGACAgtgaggctaaagggaagactaagatgtttctttaaatacagGGTGAGCCT Alignment from Spaln_nt2Genome TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTG-GAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT aggcgaggagaattgaggggaggctgcaagtttttctgttaatataccagCTTTGTGGCAGGTGCAGTGGAGCCCTACAAGGCAGCAGCCCTTAGAGCGCCTGCTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGGAGGACCCAGTGACAgtgaggctaaagggaagactaagatgtttctttaaatacagGGTGAGCCT Alignment from Pairagon TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCC-TGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGAC-----------------------------------------GGGTGAGCCT aggcgaggagaattgaggggaggctgcaagtttttctgttaatataccagCTTTGTGGCAGGTGCAGTGGAGCCCTACAAGGCAGCAGCCCTTAGAGCGCCTGCTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGGAGGACCCAGTGACAGTGAGGCTAAAGGGAAGACTAAGATGTTTCTTTAAATACAGGGTGAGCCT Alignment from Exonerate_protein2genome TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCC-CTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT aggcgaggagaattgaggggaggctgcaagtttttctgttaatataccagCTTTGTGGCAGGTGCAGTGGAGCCCTACAAGGCAGCAGCCCTTAGAGCGCCTGCTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGGAGGACCCAGTGACAgtgaggctaaagggaagactaagatgtttctttaaatacagGGTGAGCCT Alignment from Exonerate_coding2genome TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCC-CTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT aggcgaggagaattgaggggaggctgcaagtttttctgttaatataccagCTTTGTGGCAGGTGCAGTGGAGCCCTACAAGGCAGCAGCCCTTAGAGCGCCTGCTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGGAGGACCCAGTGACAgtgaggctaaagggaagactaagatgtttctttaaatacagGGTGAGCCT Alignment from GeneWise TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCG-GCCCTGGAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCCT aggcgaggagaattgaggggaggctgcaagtttttctgttaatataccagCTTTGTGGCAGGTGCAGTGGAGCCCTACAAGGCAGCAGCCCTTAGAGCGCCTGCTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGGAGGACCCAGTGACAgtgaggctaaagggaagactaagatgtttctttaaatacagGGTGAGCCT #### Tcirg1_ID185_2 --> 0 - 1 Original Alignment CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGC-TGCGAGGAACTGGAGAAGACGTTTa ctgagtggttctaatacatataaagacacacagaatgtctttggttctagTTCAATGAATCTGTAAGTGCATTCCAGAGACGCTTTGTGGTGGATGTCCAGCACCTGTGAGGAACTGGACAAGACATTTagtgagttggactcagcaggtttgggctgaaggagagtggcccatttaccc Alignment from CESAR CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGC-TGCGAGGAACTGGAGAAGACGTTTa ctgagtggttctaatacatataaagacacacagaatgtctttggttctagTTCAATGAATCTGTAAGTGCATTCCAGAGACGCTTTGTGGTGGATGTCCAGCACCTGTGAGGAACTGGACAAGACATTTagtgagttggactcagcaggtttgggctgaaggagagtggcccatttaccc Alignment from Spaln_aa2Genome CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGC-TGCGAGGAACTGGAGAAGACGTTTA ctgagtggttctaatacatataaagacacacagaatgtctttggttctagTTCAATGAATCTGTAAGTGCATTCCAGAGACGCTTTGTGGTGGATGTCCAGCACcTGTGAGGAACTGGACAAGACATTTAgtgagttggactcagcaggtttgggctgaaggagagtggcccatttaccc Alignment from Spaln_nt2Genome CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGC-TGCGAGGAACTGGAGAAGACGTTTA ctgagtggttctaatacatataaagacacacagaatgtctttggttctagTTCAATGAATCTGTAAGTGCATTCCAGAGACGCTTTGTGGTGGATGTCCAGCACCTGTGAGGAACTGGACAAGACATTTAgtgagttggactcagcaggtttgggctgaaggagagtggcccatttaccc Alignment from Pairagon CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCG-CTGCGAGGAACTGGAGAAGACGTTTA ctgagtggttctaatacatataaagacacacagaatgtctttggttctagTTCAATGAATCTGTAAGTGCATTCCAGAGACGCTTTGTGGTGGATGTCCAGCACCTGTGAGGAACTGGACAAGACATTTAgtgagttggactcagcaggtttgggctgaaggagagtggcccatttaccc Alignment from Exonerate_protein2genome CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGC-TGCGAGGAACTGGAGAAGACGTTTA ctgagtggttctaatacatataaagacacacagaatgtctttggttctagTTCAATGAATCTGTAAGTGCATTCCAGAGACGCTTTGTGGTGGATGTCCAGCACCTGTGAGGAACTGGACAAGACATTTAgtgagttggactcagcaggtttgggctgaaggagagtggcccatttaccc Alignment from Exonerate_coding2genome CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGGCGC-TGCGAGGAACTGGAGAAGACGTTTA ctgagtggttctaatacatataaagacacacagaatgtctttggttctagTTCAATGAATCTGTAAGTGCATTCCAGAGACGCTTTGTGGTGGATGTCCAGCACCTGTGAGGAACTGGACAAGACATTTAgtgagttggactcagcaggtttgggctgaaggagagtggcccatttaccc Alignment from GeneWise CTCAACGAATCCGTGAGCGCCTTCCAGAGACGCTTCGTGGTAGACGTCCGG-CGCTGCGAGGAACTGGAGAAGACGTTTA ctgagtggttctaatacatataaagacacacagaatgtctttggttctagTTCAATGAATCTGTAAGTGCATTCCAGAGACGCTTTGTGGTGGATGTCCAGCACCTGTGAGGAACTGGACAAGACATTTAgtgagttggactcagcaggtttgggctgaaggagagtggcccatttaccc #### Tctn3_ID7990_11 --> 0 - 2 Original Alignment ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTA-TCTGGGTGCCAGTTAag aaacacactgatctctcaaataggctcaaaaaggtgaatctgtttcttagATGACCCTGTTGCAGAGTGAGGGTAATGGACTTTGCTCTGCTAAGAGACATGCAGTACAGTTCGGTGTGAATGCATTACTCTGGATGCCAATTAaggtgagtaatttgcctgagatgacatcttgtcagtggcacttaagtgccat Alignment from CESAR ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTA-TCTGGGTGCCAGTTAag aaacacactgatctctcaaataggctcaaaaaggtgaatctgtttcttagATGACCCTGTTGCAGAGTGAGGGTAATGGACTTTGCTCTGCTAAGAGACATGCAGTACAGTTCGGTGTGAATGCATTACTCTGGATGCCAATTAaggtgagtaatttgcctgagatgacatcttgtcagtggcacttaagtgccat Alignment from Spaln_aa2Genome ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTA-TCTGGGTGCCAGTTAAG aaacacactgatctctcaaataggctcaaaaaggtgaatctgtttcttagATGACCCTGTTGCAGAGTGAGGGTAATGGACTTTGCTCTGCTAAGAGACATGCAGTACAGTTCGGTGTGAATGCATTAcTCTGGATGCCAATTAAGgtgagtaatttgcctgagatgacatcttgtcagtggcacttaagtgccat Alignment from Spaln_nt2Genome ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTA-TCTGGGTGCCAGTTAAG aaacacactgatctctcaaataggctcaaaaaggtgaatctgtttcttagATGACCCTGTTGCAGAGTGAGGGTAATGGACTTTGCTCTGCTAAGAGACATGCAGTACAGTTCGGTGTGAATGCATTACTCTGGATGCCAATTAAGgtgagtaatttgcctgagatgacatcttgtcagtggcacttaagtgccat Alignment from Pairagon ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTA-TCTGGGTGCCAGTTAAG aaacacactgatctctcaaataggctcaaaaaggtgaatctgtttcttagATGACCCTGTTGCAGAGTGAGGGTAATGGACTTTGCTCTGCTAAGAGACATGCAGTACAGTTCGGTGTGAATGCATTACTCTGGATGCCAATTAAGgtgagtaatttgcctgagatgacatcttgtcagtggcacttaagtgccat Alignment from Exonerate_protein2genome ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTA-TCTGGGTGCCAGTTAAG aaacacactgatctctcaaataggctcaaaaaggtgaatctgtttcttagATGACCCTGTTGCAGAGTGAGGGTAATGGACTTTGCTCTGCTAAGAGACATGCAGTACAGTTCGGTGTGAATGCATTACTCTGGATGCCAATTAAGgtgagtaatttgcctgagatgacatcttgtcagtggcacttaagtgccat Alignment from Exonerate_coding2genome ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTA-TCTGGGTGCCAGTTAAG aaacacactgatctctcaaataggctcaaaaaggtgaatctgtttcttagATGACCCTGTTGCAGAGTGAGGGTAATGGACTTTGCTCTGCTAAGAGACATGCAGTACAGTTCGGTGTGAATGCATTACTCTGGATGCCAATTAAGgtgagtaatttgcctgagatgacatcttgtcagtggcacttaagtgccat Alignment from GeneWise ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCA-GTATCTGGGTGCCAGTTAAG aaacacactgatctctcaaataggctcaaaaaggtgaatctgtttcttagATGACCCTGTTGCAGAGTGAGGGTAATGGACTTTGCTCTGCTAAGAGACATGCAGTACAGTTCGGTGTGAATGCATTACTCTGGATGCCAATTAAGgtgagtaatttgcctgagatgacatcttgtcagtggcacttaagtgccat #### Tctn3_ID7995_6 --> 2 - 0 Original Alignment gtTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCG-GAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG ctcagttactggggctgccatccccttacactttcctgaaggatattgagggTTTCTAGAGACTAAAAGCACAACCTCTCCCCGTTTCTTTAAGGACCTCGCCAGTAGCTGCACCTCTCGAGCCAGCTCTGGATGCAGTCTCAGATTATAACTTCAGAGTCTTGAAGgtgagacacaccacctttctcactccttctgatttctcctcacatggttt Alignment from CESAR gt---------TTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCG-GAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG tggggctgccatccccgccatccccttacactttcctgaaggaTATTGAGGGTTTCTAGAGACTAAAAGCACAACCTCTCCCCGTTTCTTTAAGGACCTCGCCAGTAGCTGCACCTCTCGAGCCAGCTCTGGATGCAGTCTCAGATTATAACTTCAGAGTCTTGAAGgtgagacacaccacctttctcactccttctgatttctcctcacatggttt Alignment from Spaln_aa2Genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCG-GAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG ctcagttactggggctgccatccccttacactttcctgaaggatattgagGGTTTCTAGAGACTAAAAGCACAACCTCTCCCCGTTTCTTTAAGGACCTCGCCAGTAGCTGCACCTCTcGAGCCAGCTCTGGATGCAGTCTCAGATTATAACTTCAGAGTCTTGAAGgtgagacacaccacctttctcactccttctgatttctcctcacatggttt Alignment from Spaln_nt2Genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCG-GAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG ctcagttactggggctgccatccccttacactttcctgaaggatattgagGGTTTCTAGAGACTAAAAGCACAACCTCTCCCCGTTTCTTTAAGGACCTCGCCAGTAGCTGCACCTCTCGAGCCAGCTCTGGATGCAGTCTCAGATTATAACTTCAGAGTCTTGAAGgtgagacacaccacctttctcactccttctgatttctcctcacatggttt Alignment from Pairagon GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTC-GGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG ctcagttactggggctgccatccccttacactttcctgaaggatattgagGGTTTCTAGAGACTAAAAGCACAACCTCTCCCCGTTTCTTTAAGGACCTCGCCAGTAGCTGCACCTCTCGAGCCAGCTCTGGATGCAGTCTCAGATTATAACTTCAGAGTCTTGAAGgtgagacacaccacctttctcactccttctgatttctcctcacatggttt Alignment from Exonerate_protein2genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCG-GAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG ctcagttactggggctgccatccccttacactttcctgaaggatattgagGGTTTCTAGAGACTAAAAGCACAACCTCTCCCCGTTTCTTTAAGGACCTCGCCAGTAGCTGCACCTCTCGAGCCAGCTCTGGATGCAGTCTCAGATTATAACTTCAGAGTCTTGAAGgtgagacacaccacctttctcactccttctgatttctcctcacatggttt Alignment from Exonerate_coding2genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCG-GAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG ctcagttactggggctgccatccccttacactttcctgaaggatattgagGGTTTCTAGAGACTAAAAGCACAACCTCTCCCCGTTTCTTTAAGGACCTCGCCAGTAGCTGCACCTCTCGAGCCAGCTCTGGATGCAGTCTCAGATTATAACTTCAGAGTCTTGAAGgtgagacacaccacctttctcactccttctgatttctcctcacatggttt Alignment from GeneWise GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACC-TCGGAGCCAGCCCTGGATGCTGCCTCTTACTATAACTTCAGAGTCTTGAAG ctcagttactggggctgccatccccttacactttcctgaaggatattgagGGTTTCTAGAGACTAAAAGCACAACCTCTCCCCGTTTCTTTAAGGACCTCGCCAGTAGCTGCACCTCTCGAGCCAGCTCTGGATGCAGTCTCAGATTATAACTTCAGAGTCTTGAAGgtgagacacaccacctttctcactccttctgatttctcctcacatggttt #### Tdrd1_ID12205_6 --> 0 - 0 Original Alignment GTTGACTGTCCCCCGGGAGTTACTAAAGAA-ATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG gacacatgggagctgggctgcctcaagctaagaaaacgctttcttttcagGTTGATTGCCCCCCAGGAGTTACTAAACAACATAACAGTAGGTGCTGAGAGAGTTATGTTCTCTGATTTGAGAAGTCTTCAACTAAAGAAAACAATGGAGATAAAAgtaagtggatttgcctcccacttgcctcccacatgtgatcccactgaaat Alignment from CESAR GTTGACTGTCCCCCGGGAGTTACTAAAGAA-ATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG gacacatgggagctgggctgcctcaagctaagaaaacgctttcttttcagGTTGATTGCCCCCCAGGAGTTACTAAACAACATAACAGTAGGTGCTGAGAGAGTTATGTTCTCTGATTTGAGAAGTCTTCAACTAAAGAAAACAATGGAGATAAAAgtaagtggatttgcctcccacttgcctcccacatgtgatcccactgaaat Alignment from Spaln_aa2Genome GTTGACTGTCCCCCGGGAGTTACTAAAGAA-ATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG gacacatgggagctgggctgcctcaagctaagaaaacgctttcttttcagGTTGATTGCCCCCCAGGAGTTACTAAACAAcATAACAGTAGGTGCTGAGAGAGTTATGTTCTCTGATTTGAGAAGTCTTCAACTAAAGAAAACAATGGAGATAAAAgtaagtggatttgcctcccacttgcctcccacatgtgatcccactgaaat Alignment from Spaln_nt2Genome GTTGACTGTCCCCCGGGAGTTACTAAAGAA-ATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG gacacatgggagctgggctgcctcaagctaagaaaacgctttcttttcagGTTGATTGCCCCCCAGGAGTTACTAAACAACATAACAGTAGGTGCTGAGAGAGTTATGTTCTCTGATTTGAGAAGTCTTCAACTAAAGAAAACAATGGAGATAAAAgtaagtggatttgcctcccacttgcctcccacatgtgatcccactgaaat Alignment from Pairagon GTTGACTGTCCCCCGGGAGTTACTAAAGAA-ATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG gacacatgggagctgggctgcctcaagctaagaaaacgctttcttttcagGTTGATTGCCCCCCAGGAGTTACTAAACAACATAACAGTAGGTGCTGAGAGAGTTATGTTCTCTGATTTGAGAAGTCTTCAACTAAAGAAAACAATGGAGATAAAAgtaagtggatttgcctcccacttgcctcccacatgtgatcccactgaaat Alignment from Exonerate_protein2genome GTTGACTGTCCCCCGGGAGTTACTAAAGAA-ATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG gacacatgggagctgggctgcctcaagctaagaaaacgctttcttttcagGTTGATTGCCCCCCAGGAGTTACTAAACAACATAACAGTAGGTGCTGAGAGAGTTATGTTCTCTGATTTGAGAAGTCTTCAACTAAAGAAAACAATGGAGATAAAAgtaagtggatttgcctcccacttgcctcccacatgtgatcccactgaaat Alignment from Exonerate_coding2genome GAAGATAATAAATCACCATTTGAAACAAAGGCCATTGAAGTGAAGAGTGAGGTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG GACACATGGGAGCTGGGCTGCCTCAAGCTAAGAAAACGCTTTCTTTTCAGGTTGATTGCCCCCCAGGAGTTACTAAACAACATAACAGTAGGTGCTGAGAGAGTTATGTTCTCTGATTTGAGAAGTCTTCAACTAAAGAAAACAATGGAGATAAAAgtaagtggatttgcctcccacttgcctcccacatgtgatcccactgaaat Alignment from GeneWise GTTGACTGTCCCCCGGGAGTTACTAAA-GAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTCTCCAACTCAAGAAAACCATGGAGATAAAG gacacatgggagctgggctgcctcaagctaagaaaacgctttcttttcagGTTGATTGCCCCCCAGGAGTTACTAAACAACATAACAGTAGGTGCTGAGAGAGTTATGTTCTCTGATTTGAGAAGTCTTCAACTAAAGAAAACAATGGAGATAAAAgtaagtggatttgcctcccacttgcctcccacatgtgatcccactgaaat #### Tdrd1_ID12222_23 --> 2 - 0 Original Alignment agATACCACACAGCAGAGACTGC-TGTTGCACAGAGTTACAGAAACAG ggatctgtctccgccttgacctagtccaagcctatgttcatctcaattagagATACCTCACAGTAGGGACTGCCTGCTGCACGGAATTACAGAAACAGgtataggtttactgctgctcaaaccagtgtgctgcttcccattgacatag Alignment from CESAR agATACCACACAGCAGAGACTGC-TGTTGCACAGAGTTACAGAAACAG ggatctgtctccgccttgacctagtccaagcctatgttcatctcaattagagATACCTCACAGTAGGGACTGCCTGCTGCACGGAATTACAGAAACAGgtataggtttactgctgctcaaaccagtgtgctgcttcccattgacatag Alignment from Spaln_aa2Genome AGATACCACACAGCAGAGACTGC-TGTTGCACAGAGTTACAGAAACAG ggatctgtctccgccttgacctagtccaagcctatgttcatctcaattagAGATACCTCACAGTAGGGACTGCcTGCTGCACGGAATTACAGAAACAGgtataggtttactgctgctcaaaccagtgtgctgcttcccattgacatag Alignment from Spaln_nt2Genome AGATACCACACAGCAGAGACTGC-TGTTGCACAGAGTTACAGAAACAG ggatctgtctccgccttgacctagtccaagcctatgttcatctcaattagAGATACCTCACAGTAGGGACTGCCTGCTGCACGGAATTACAGAAACAGgtataggtttactgctgctcaaaccagtgtgctgcttcccattgacatag Alignment from Pairagon AGATACCACACAGCAGAGACTG-CTGTTGCACAGAGTTACAGAAACAG ggatctgtctccgccttgacctagtccaagcctatgttcatctcaattagAGATACCTCACAGTAGGGACTGCCTGCTGCACGGAATTACAGAAACAGgtataggtttactgctgctcaaaccagtgtgctgcttcccattgacatag Alignment from Exonerate_protein2genome AGATACCACACAGCAGAGACTGC-TGTTGCACAGAGTTACAGAAACAG ggatctgtctccgccttgacctagtccaagcctatgttcatctcaattagAGATACCTCACAGTAGGGACTGCCTGCTGCACGGAATTACAGAAACAGgtataggtttactgctgctcaaaccagtgtgctgcttcccattgacatag Alignment from Exonerate_coding2genome AGATACCACACAGCAGAGACTGC-TGTTGCACAGAGTTACAGAAACAG ggatctgtctccgccttgacctagtccaagcctatgttcatctcaattagAGATACCTCACAGTAGGGACTGCCTGCTGCACGGAATTACAGAAACAGgtataggtttactgctgctcaaaccagtgtgctgcttcccattgacatag Alignment from GeneWise AGATACCACACAGCAGAGACTGC-TGTTGCACAGAGTTACAGAAACAG ggatctgtctccgccttgacctagtccaagcctatgttcatctcaattagAGATACCTCACAGTAGGGACTGCCTGCTGCACGGAATTACAGAAACAGgtataggtttactgctgctcaaaccagtgtgctgcttcccattgacatag #### Tle4_ID3619_18 --> 0 - 1 Original Alignment ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATAC-CAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTg tcgctccacaggagaagtgtcctcacccttctctgtttctaatgtctcagATTTTTTCATTGGGCTATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAACAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCACTGCagtaagaaaactcccagttttcagtttcaatttgaatgattgcttggttcc Alignment from CESAR ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATAC-CAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTg tcgctccacaggagaagtgtcctcacccttctctgtttctaatgtctcagATTTTTTCATTGGGCTATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAACAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCACTGCagtaagaaaactcccagttttcagtttcaatttgaatgattgcttggttcc Alignment from Spaln_aa2Genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATAC-CAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tcgctccacaggagaagtgtcctcacccttctctgtttctaatgtctcagATTTTTTCATTGGGCTATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAACAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACcCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCACTGCAgtaagaaaactcccagttttcagtttcaatttgaatgattgcttggttcc Alignment from Spaln_nt2Genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATA-CCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tcgctccacaggagaagtgtcctcacccttctctgtttctaatgtctcagATTTTTTCATTGGGCTATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAACAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCACTGCAgtaagaaaactcccagttttcagtttcaatttgaatgattgcttggttcc Alignment from Pairagon ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATA-CCAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tcgctccacaggagaagtgtcctcacccttctctgtttctaatgtctcagATTTTTTCATTGGGCTATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAACAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCACTGCAgtaagaaaactcccagttttcagtttcaatttgaatgattgcttggttcc Alignment from Exonerate_protein2genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATAC-CAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tcgctccacaggagaagtgtcctcacccttctctgtttctaatgtctcagATTTTTTCATTGGGCTATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAACAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCACTGCAgtaagaaaactcccagttttcagtttcaatttgaatgattgcttggttcc Alignment from Exonerate_coding2genome ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATAC-CAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tcgctccacaggagaagtgtcctcacccttctctgtttctaatgtctcagATTTTTTCATTGGGCTATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAACAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCACTGCAgtaagaaaactcccagttttcagtttcaatttgaatgattgcttggttcc Alignment from GeneWise ATCTTTTCATTGGGCTATTGCCCAACTGGAGAGTGGCTTGCAGTGGGGATGGAGAATAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATAC-CAGTTGCATCTTCATGAGAGCTGTGTGCTGTCACTCAAGTTTGCCCACTGTG tcgctccacaggagaagtgtcctcacccttctctgtttctaatgtctcagATTTTTTCATTGGGCTATTGCCCAACTGGAAAGTGGCTTGCAGTGGGGATGGAGAACAGCAATGTGGAAGTATTGCATGTCACCAAACCAGACAAATACCCAGTTGCATCTTCATGAGAGCTGCGTGCTGTCCCTCAAGTTTGCCCACTGCAgtaagaaaactcccagttttcagtttcaatttgaatgattgcttggttcc #### Tm7sf2_ID1412_8 --> 2 - 1 Original Alignment ttATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAAT-CCTTCTGACCCCAGCGTGGCTg aaggcttggaattctaccccaccatctcattgaatctttcttgttcacagttATTGGTTATTATATCTTCCGAGGGGCCAACTCTGAGAAAAACACTTTCAGGCAGAATCCCTTCCGAGCCCAGTGCGGCAggtaagttgggtttgtcagagcttatgcctaagtgaacctgagggcctgta Alignment from CESAR ttATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAAT-CCTTCTGACCCCAGCGTGGCTg aaggcttggaattctaccccaccatctcattgaatctttcttgttcacagttATTGGTTATTATATCTTCCGAGGGGCCAACTCTGAGAAAAACACTTTCAGGCAGAATCCCTTCCGAGCCCAGTGCGGCAggtaagttgggtttgtcagagcttatgcctaagtgaacctgagggcctgta Alignment from Spaln_aa2Genome TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTG aaggcttggaattctaccccaccatctcattgaatctttcttgttcacagTTATTGGTTATTATATCTTCCGAGGGGCCAACTCTGAGAAAAACACTTTCAGGCAGAATCCCTTCCGAGCCCAG---TGCGgcaggtaagttgggtttgtcagagcttatgcctaagtgaacctgagggcctgta Alignment from Spaln_nt2Genome TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCC-TTCTGACCCCAGCGTGGCTG aaggcttggaattctaccccaccatctcattgaatctttcttgttcacagTTATTGGTTATTATATCTTCCGAGGGGCCAACTCTGAGAAAAACACTTTCAGGCAGAATCCCTTCCGAGCCCAGTGCGGCAGgtaagttgggtttgtcagagcttatgcctaagtgaacctgagggcctgta Alignment from Pairagon TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAAT-CCTTCTGACCCCAGCGTGGCTG aaggcttggaattctaccccaccatctcattgaatctttcttgttcacagTTATTGGTTATTATATCTTCCGAGGGGCCAACTCTGAGAAAAACACTTTCAGGCAGAATCCCTTCCGAGCCCAGTGCGGCAGgtaagttgggtttgtcagagcttatgcctaagtgaacctgagggcctgta Alignment from Exonerate_protein2genome TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAAT-CCTTCTGACCCCAGCGTGGCTG aaggcttggaattctaccccaccatctcattgaatctttcttgttcacagTTATTGGTTATTATATCTTCCGAGGGGCCAACTCTGAGAAAAACACTTTCAGGCAGAATCCCTTCCGAGCCCAGTGCGGCAGgtaagttgggtttgtcagagcttatgcctaagtgaacctgagggcctgta Alignment from Exonerate_coding2genome TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAAT-CCTTCTGACCCCAGCGTGGCTG aaggcttggaattctaccccaccatctcattgaatctttcttgttcacagTTATTGGTTATTATATCTTCCGAGGGGCCAACTCTGAGAAAAACACTTTCAGGCAGAATCCCTTCCGAGCCCAGTGCGGCAGgtaagttgggtttgtcagagcttatgcctaagtgaacctgagggcctgta Alignment from GeneWise TTATTGGTTACTACATCTTCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCT-TCTGACCCCAGCGTGGCTG aaggcttggaattctaccccaccatctcattgaatctttcttgttcacagTTATTGGTTATTATATCTTCCGAGGGGCCAACTCTGAGAAAAACACTTTCAGGCAGAATCCCTTCCGAGCCCAGTGCGGCAGgtaagttgggtttgtcagagcttatgcctaagtgaacctgagggcctgta #### Tm7sf2_ID1413_7 --> 0 - 1 Original Alignment GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCC-TTGCTCATCTGCCTCCTTAAGg tgtgaggacatcaactgtactaagtcaatgacctgttcctttgttttcagGAGTCTGTCCTCACCACCATGGATATCATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATTTAGCCTGGATACCACTTACCTACAGCCTGCAGGCCCAGTTCCTTTTATACCATCCACAACCCCTGGGGTTCCCAATGGCCCTTACTCATCTGCCTGCTTCGGggtaagtattagataccctcaatgccccatccccttccatccatgttgtat Alignment from CESAR GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCC-TTGCTCATCTGCCTCCTTAAGg tgtgaggacatcaactgtactaagtcaatgacctgttcctttgttttcagGAGTCTGTCCTCACCACCATGGATATCATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATTTAGCCTGGATACCACTTACCTACAGCCTGCAGGCCCAGTTCCTTTTATACCATCCACAACCCCTGGGGTTCCCAATGGCCCTTACTCATCTGCCTGCTTCGGggtaagtattagataccctcaatgccccatccccttccatccatgttgtat Alignment from Spaln_aa2Genome GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCCTTG-CTCATCTGCCTCCTTAAGG tgtgaggacatcaactgtactaagtcaatgacctgttcctttgttttcagGAGTCTGTCCTCACCACCATGGATATCATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATTTAGCCTGGATACCACTTACCTACAGCCTGCAGGCCCAGTTCCTTTTATACCATCCACAACCCCTGGGGTTCCCAATGGCCCTTaCTCATCTGCCTGCTTCGGGgtaagtattagataccctcaatgccccatccccttccatccatgttgtat Alignment from Spaln_nt2Genome GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCC-TTGCTCATCTGCCTCCTTAAGG tgtgaggacatcaactgtactaagtcaatgacctgttcctttgttttcagGAGTCTGTCCTCACCACCATGGATATCATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATTTAGCCTGGATACCACTTACCTACAGCCTGCAGGCCCAGTTCCTTTTATACCATCCACAACCCCTGGGGTTCCCAATGGCCCTTACTCATCTGCCTGCTTCGGGgtaagtattagataccctcaatgccccatccccttccatccatgttgtat Alignment from Pairagon GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGG-CCTTGCTCATCTGCCTCCTTAAGG tgtgaggacatcaactgtactaagtcaatgacctgttcctttgttttcagGAGTCTGTCCTCACCACCATGGATATCATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATTTAGCCTGGATACCACTTACCTACAGCCTGCAGGCCCAGTTCCTTTTATACCATCCACAACCCCTGGGGTTCCCAATGGCCCTTACTCATCTGCCTGCTTCGGGgtaagtattagataccctcaatgccccatccccttccatccatgttgtat Alignment from Exonerate_protein2genome GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCC-TTGCTCATCTGCCTCCTTAAGG tgtgaggacatcaactgtactaagtcaatgacctgttcctttgttttcagGAGTCTGTCCTCACCACCATGGATATCATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATTTAGCCTGGATACCACTTACCTACAGCCTGCAGGCCCAGTTCCTTTTATACCATCCACAACCCCTGGGGTTCCCAATGGCCCTTACTCATCTGCCTGCTTCGGGgtaagtattagataccctcaatgccccatccccttccatccatgttgtat Alignment from Exonerate_coding2genome GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATGGCC-TTGCTCATCTGCCTCCTTAAGG tgtgaggacatcaactgtactaagtcaatgacctgttcctttgttttcagGAGTCTGTCCTCACCACCATGGATATCATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATTTAGCCTGGATACCACTTACCTACAGCCTGCAGGCCCAGTTCCTTTTATACCATCCACAACCCCTGGGGTTCCCAATGGCCCTTACTCATCTGCCTGCTTCGGGgtaagtattagataccctcaatgccccatccccttccatccatgttgtat Alignment from GeneWise GAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGGTTGCCCATG-GCCTTGCTCATCTGCCTCCTTAAGG tgtgaggacatcaactgtactaagtcaatgacctgttcctttgttttcagGAGTCTGTCCTCACCACCATGGATATCATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGATTTAGCCTGGATACCACTTACCTACAGCCTGCAGGCCCAGTTCCTTTTATACCATCCACAACCCCTGGGGTTCCCAATGGCCCTTACTCATCTGCCTGCTTCGGGgtaagtattagataccctcaatgccccatccccttccatccatgttgtat #### Tm7sf2_ID1417_3 --> 0 - 1 Original Alignment GTGGCCGAAGGCCTGGAA-CTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATg tatgctgtgaaatgatccatgccctgttctggtgtcctcctcattggcagGTAGCTGAAGGCGTGGAACCTGAAGGATAAGAGTCGCTTGCGTTACCCTATTAATggtaggtgagtaccccctccctccataaatcaactccctccataaatcaaa Alignment from CESAR GTGGCCGAAGGCCTGGAA-CTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATg tatgctgtgaaatgatccatgccctgttctggtgtcctcctcattggcagGTAGCTGAAGGCGTGGAACCTGAAGGATAAGAGTCGCTTGCGTTACCCTATTAATggtaggtgagtaccccctccctccataaatcaactccctccataaatcaaa Alignment from Spaln_aa2Genome GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG tatgctgtgaaatgatccatgccctgttctggtgtcctcctcattggcaggtagCTG---AAGGCGTGGAACCTGAAGGATAAGAGTCGCTTGCGTTACCCTATTAATGgtaggtgagtaccccctccctccataaatcaactccctccataaatcaaa Alignment from Spaln_nt2Genome GTGGCCGAAGGCCTGGAAC-TGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG tatgctgtgaaatgatccatgccctgttctggtgtcctcctcattggcagGTAGCTGAAGGCGTGGAACCTGAAGGATAAGAGTCGCTTGCGTTACCCTATTAATGgtaggtgagtaccccctccctccataaatcaactccctccataaatcaaa Alignment from Pairagon GTGGCCGAAGGCCTGGAA-CTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG tatgctgtgaaatgatccatgccctgttctggtgtcctcctcattggcagGTAGCTGAAGGCGTGGAACCTGAAGGATAAGAGTCGCTTGCGTTACCCTATTAATGgtaggtgagtaccccctccctccataaatcaactccctccataaatcaaa Alignment from Exonerate_protein2genome GTGGCCGAAGGCCTGGAA-CTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG tatgctgtgaaatgatccatgccctgttctggtgtcctcctcattggcagGTAGCTGAAGGCGTGGAACCTGAAGGATAAGAGTCGCTTGCGTTACCCTATTAATGgtaggtgagtaccccctccctccataaatcaactccctccataaatcaaa Alignment from Exonerate_coding2genome GTGGCCGAAGGCCTGGAA-CTGAAGGACAAGAGTCGCCTGCGCTACCCTATTAATG tatgctgtgaaatgatccatgccctgttctggtgtcctcctcattggcagGTAGCTGAAGGCGTGGAACCTGAAGGATAAGAGTCGCTTGCGTTACCCTATTAATGgtaggtgagtaccccctccctccataaatcaactccctccataaatcaaa Alignment from GeneWise tatgctgtgaaatgatccatgccctgttctggtgtcctcctcattggcaggtagctgaaggcgtggaacctgaaggataagagtcgcttgcgttaccctattaatggtaggtgagtaccccctccctccataaatcaactccctccataaatcaaa #### Tm7sf2_ID1418_2 --> 2 - 0 Original Alignment gcGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAG-GTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagataatgcttggaaccagtcaggttattcttttctctctccccaaaggtGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACTTCCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACTCCTGGCCCTACCAGCTTATCTACCTGGGCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGCTGTTCATCTGGCTTGGCCTGCAGCGTGGCACTCTATTTGCTGCCTGCATGCAGGgtaggggatctatcacaacataggaagcatatgctgtgaaatgatccatg Alignment from CESAR gcGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAG-GTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagataatgcttggaaccagtcaggttattcttttctctctccccaaaggtGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACTTCCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACTCCTGGCCCTACCAGCTTATCTACCTGGGCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGCTGTTCATCTGGCTTGGCCTGCAGCGTGGCACTCTATTTGCTGCCTGCATGCAGGgtaggggatctatcacaacataggaagcatatgctgtgaaatgatccatg Alignment from Spaln_aa2Genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAG-GTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagataatgcttggaaccagtcaggttattcttttctctctccccaaagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACTTCCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACTCCTGGCCCTACCAGCTTATCTACCTGGGCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGCTGTTCATCTGGCTTGGCCTGCAGcGTGGCACTCTATTTGCTGCCTGCATGCAGGgtaggggatctatcacaacataggaagcatatgctgtgaaatgatccatg Alignment from Spaln_nt2Genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAG-GTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagataatgcttggaaccagtcaggttattcttttctctctccccaaagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACTTCCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACTCCTGGCCCTACCAGCTTATCTACCTGGGCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGCTGTTCATCTGGCTTGGCCTGCAGCGTGGCACTCTATTTGCTGCCTGCATGCAGGgtaggggatctatcacaacataggaagcatatgctgtgaaatgatccatg Alignment from Pairagon GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAG-GTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagataatgcttggaaccagtcaggttattcttttctctctccccaaagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACTTCCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACTCCTGGCCCTACCAGCTTATCTACCTGGGCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGCTGTTCATCTGGCTTGGCCTGCAGCGTGGCACTCTATTTGCTGCCTGCATGCAGGgtaggggatctatcacaacataggaagcatatgctgtgaaatgatccatg Alignment from Exonerate_protein2genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAG-GTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagataatgcttggaaccagtcaggttattcttttctctctccccaaagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACTTCCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACTCCTGGCCCTACCAGCTTATCTACCTGGGCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGCTGTTCATCTGGCTTGGCCTGCAGCGTGGCACTCTATTTGCTGCCTGCATGCAGGgtaggggatctatcacaacataggaagcatatgctgtgaaatgatccatg Alignment from Exonerate_coding2genome GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAG-GTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagataatgcttggaaccagtcaggttattcttttctctctccccaaagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACTTCCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACTCCTGGCCCTACCAGCTTATCTACCTGGGCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGCTGTTCATCTGGCTTGGCCTGCAGCGTGGCACTCTATTTGCTGCCTGCATGCAGGgtaggggatctatcacaacataggaagcatatgctgtgaaatgatccatg Alignment from GeneWise GCGTCGCGGCTTTACTGATCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCTACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTCGGCCTGCAG-GTGGCGCTCTATTTGCTGCCTGCACGCAAG tgagataatgcttggaaccagtcaggttattcttttctctctccccaaagGTGTTGCAGCTTTATTGATACTGCTGCCTGCCACCATGTCTCACTTCCTCCTCGCCGCTCGCTCAGGGCCAGCGCGACTCCTGGCCCTACCAGCTTATCTACCTGGGCTGGAGGAGCTATGGAGCCCATGGGCTCTGCTCCTGCTGTTCATCTGGCTTGGCCTGCAGCGTGGCACTCTATTTGCTGCCTGCATGCAGGgtaggggatctatcacaacataggaagcatatgctgtgaaatgatccatg #### Tmem179b_ID2369_4 --> 1 - 0 Original Alignment cTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCT-GTGCAGTTTTACTCCAACCTACATACTGCTGAA ccattcttcctatgcttgtcaccacctgttaaactgtttggcttctccagcTGCTCCGAAGCACAGAAGACTGCATGGACACCTTCAGGAACTGCTCGTGCAGCTTTACTCCAACCTACATACTGCTGAAgtgagttgcaggtatatatcaagattaagcaacaagcttaagtttgccca Alignment from CESAR cTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCT-GTGCAGTTTTACTCCAACCTACATACTGCTGAA ccattcttcctatgcttgtcaccacctgttaaactgtttggcttctccagcTGCTCCGAAGCACAGAAGACTGCATGGACACCTTCAGGAACTGCTCGTGCAGCTTTACTCCAACCTACATACTGCTGAAgtgagttgcaggtatatatcaagattaagcaacaagcttaagtttgccca Alignment from Spaln_aa2Genome CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCT-GTGCAGTTTTACTCCAACCTACATACTGCTGAA ccattcttcctatgcttgtcaccacctgttaaactgtttggcttctccagCTGCTCCGAAGCACAGAAGACTGCATGGACACCTTCAGGAACTGCTcGTGCAGCTTTACTCCAACCTACATACTGCTGAAgtgagttgcaggtatatatcaagattaagcaacaagcttaagtttgccca Alignment from Spaln_nt2Genome CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCT-GTGCAGTTTTACTCCAACCTACATACTGCTGAA ccattcttcctatgcttgtcaccacctgttaaactgtttggcttctccagCTGCTCCGAAGCACAGAAGACTGCATGGACACCTTCAGGAACTGCTCGTGCAGCTTTACTCCAACCTACATACTGCTGAAgtgagttgcaggtatatatcaagattaagcaacaagcttaagtttgccca Alignment from Pairagon CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCT-GTGCAGTTTTACTCCAACCTACATACTGCTGAA ccattcttcctatgcttgtcaccacctgttaaactgtttggcttctccagCTGCTCCGAAGCACAGAAGACTGCATGGACACCTTCAGGAACTGCTCGTGCAGCTTTACTCCAACCTACATACTGCTGAAgtgagttgcaggtatatatcaagattaagcaacaagcttaagtttgccca Alignment from Exonerate_protein2genome CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCT-GTGCAGTTTTACTCCAACCTACATACTGCTGAA ccattcttcctatgcttgtcaccacctgttaaactgtttggcttctccagCTGCTCCGAAGCACAGAAGACTGCATGGACACCTTCAGGAACTGCTCGTGCAGCTTTACTCCAACCTACATACTGCTGAAgtgagttgcaggtatatatcaagattaagcaacaagcttaagtttgccca Alignment from Exonerate_coding2genome CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCT-GTGCAGTTTTACTCCAACCTACATACTGCTGAA ccattcttcctatgcttgtcaccacctgttaaactgtttggcttctccagCTGCTCCGAAGCACAGAAGACTGCATGGACACCTTCAGGAACTGCTCGTGCAGCTTTACTCCAACCTACATACTGCTGAAgtgagttgcaggtatatatcaagattaagcaacaagcttaagtttgccca Alignment from GeneWise CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACT-GCTGTGCAGTTTTACTCCAACCTACATACTGCTGAA ccattcttcctatgcttgtcaccacctgttaaactgtttggcttctccagCTGCTCCGAAGCACAGAAGACTGCATGGACACCTTCAGGAACTGCTCGTGCAGCTTTACTCCAACCTACATACTGCTGAAgtgagttgcaggtatatatcaagattaagcaacaagcttaagtttgccca #### Tmem179b_ID2371_2 --> 0 - 2 Original Alignment GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGC-ATCGAAGACTCCCACag cagtccccccttccacctcaacttcactctctctcctgtgcttaacacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGTAGCTGTCATA---GATTCCCACaggtaagtgtccatgagaaatgagaaatacttgggagagattatcaatataa Alignment from CESAR GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACag cagtccccccttccacctcaacttcactctctctcctgtgcttaacacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGTAGCT--GTCATAGATTCCCACaggtaagtgtccatgagaaatgagaaatacttgggagagattatcaatataa Alignment from Spaln_aa2Genome GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAGAG cagtccccccttccacctcaacttcactctctctcctgtgcttaacacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGTAGCTGTCATAGATTCCCACAGGTAAgtgtccatgagaaatgagaaatacttgggagagattatcaatataa Alignment from Spaln_nt2Genome GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG cagtccccccttccacctcaacttcactctctctcctgtgcttaacacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGTAGCTG--TCATAGATTCCCACAGgtaagtgtccatgagaaatgagaaatacttgggagagattatcaatataa Alignment from Pairagon GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAG cagtccccccttccacctcaacttcactctctctcctgtgcttaacacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGTAGCTG--TCATAGATTCCCACAGgtaagtgtccatgagaaatgagaaatacttgggagagattatcaatataa Alignment from Exonerate_protein2genome GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGC-ATCGAAGACTCCCACAG cagtccccccttccacctcaacttcactctctctcctgtgcttaacacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGTAGCTGTCATA---GATTCCCACAGgtaagtgtccatgagaaatgagaaatacttgggagagattatcaatataa Alignment from Exonerate_coding2genome GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGC-ATCGAAGACTCCCACAG cagtccccccttccacctcaacttcactctctctcctgtgcttaacacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGTAGCTGTCATA---GATTCCCACAGgtaagtgtccatgagaaatgagaaatacttgggagagattatcaatataa Alignment from GeneWise GGCTCCTTTGGTGGTAACTGTCCCTTGTATGGTGTGGCTGCACTCAATGGCTCCTCTCTGGCCTTGTTAGGTCCCTCAGCCCCTTCCCTCTGCTACTTCGTGGCTGGGGCTTCAGGCATCTTGGCACTCTACTGCCTTCTGCTTCTCTTCTTCTGGGTCTACAGCAGCTGCATCGAAGACTCCCACAGAG cagtccccccttccacctcaacttcactctctctcctgtgcttaacacagGGCTCCTTTGGTGGCAACTGTCCATTGTATGGTGCTGCTGCACTCAATGGCTCCTCGCTAGCTTTGCTAGGTCCGGCAGCCCCTTCCCTCTGCTACTTTGTAGCTGGGGGTTCAGGCATCTTGGCCCTCTACTGCCTTCTGCTTCTGTTTTTCTGGGTCTACAGTAGCTGTCATAGATTCCCACAGGTAAgtgtccatgagaaatgagaaatacttgggagagattatcaatataa #### Tmem180_ID9862_4 --> 1 - 0 Original Alignment cGTGTGTGAAGAGGAG-CCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTGGGCCAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG ctaggcccagactagcatgagcatgctatgtgtgtgtggttcttttcaagtGTGTGTGAAGAGGAGCCCACCAGTGGGTGGTGAGGAGGCAGGTAACATCACCTTGGGGCAGTACCTCCGGCAACTGGCACACCACCAGAACTTCCTATGGTTTGTGGGTATGGATTTGGTGCAGgtatgtcaacccatccctcacctctctgtcagcctctgccacacccaaga Alignment from CESAR cGTGTGTGAAGAGGAG-CCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTGGGCCAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG ctaggcccagactagcatgagcatgctatgtgtgtgtggttcttttcaagtGTGTGTGAAGAGGAGCCCACCAGTGGGTGGTGAGGAGGCAGGTAACATCACCTTGGGGCAGTACCTCCGGCAACTGGCACACCACCAGAACTTCCTATGGTTTGTGGGTATGGATTTGGTGCAGgtatgtcaacccatccctcacctctctgtcagcctctgccacacccaaga Alignment from Spaln_aa2Genome CGTGTGTGAAGAGGAG-CCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTGGGCCAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG ctaggcccagactagcatgagcatgctatgtgtgtgtggttcttttcaagTGTGTGTGAAGAGGAGcCCACCAGTGGGTGGTGAGGAGGCAGGTAACATCACCTTGGGGCAGTACCTCCGGCAACTGGCACACCACCAGAACTTCCTATGGTTTGTGGGTATGGATTTGGTGCAGgtatgtcaacccatccctcacctctctgtcagcctctgccacacccaaga Alignment from Spaln_nt2Genome CGTGTGTGAAGAGGAG-CCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTGGGCCAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG ctaggcccagactagcatgagcatgctatgtgtgtgtggttcttttcaagTGTGTGTGAAGAGGAGCCCACCAGTGGGTGGTGAGGAGGCAGGTAACATCACCTTGGGGCAGTACCTCCGGCAACTGGCACACCACCAGAACTTCCTATGGTTTGTGGGTATGGATTTGGTGCAGgtatgtcaacccatccctcacctctctgtcagcctctgccacacccaaga Alignment from Pairagon CGTGTGTGAAGAGGAG-CCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTGGGCCAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG ctaggcccagactagcatgagcatgctatgtgtgtgtggttcttttcaagTGTGTGTGAAGAGGAGCCCACCAGTGGGTGGTGAGGAGGCAGGTAACATCACCTTGGGGCAGTACCTCCGGCAACTGGCACACCACCAGAACTTCCTATGGTTTGTGGGTATGGATTTGGTGCAGgtatgtcaacccatccctcacctctctgtcagcctctgccacacccaaga Alignment from Exonerate_protein2genome CGTGTGTGAAGAGGAG-CCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTGGGCCAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG ctaggcccagactagcatgagcatgctatgtgtgtgtggttcttttcaagTGTGTGTGAAGAGGAGCCCACCAGTGGGTGGTGAGGAGGCAGGTAACATCACCTTGGGGCAGTACCTCCGGCAACTGGCACACCACCAGAACTTCCTATGGTTTGTGGGTATGGATTTGGTGCAGgtatgtcaacccatccctcacctctctgtcagcctctgccacacccaaga Alignment from Exonerate_coding2genome CGTGTGTGAAGAGGAG-CCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTGGGCCAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG ctaggcccagactagcatgagcatgctatgtgtgtgtggttcttttcaagTGTGTGTGAAGAGGAGCCCACCAGTGGGTGGTGAGGAGGCAGGTAACATCACCTTGGGGCAGTACCTCCGGCAACTGGCACACCACCAGAACTTCCTATGGTTTGTGGGTATGGATTTGGTGCAGgtatgtcaacccatccctcacctctctgtcagcctctgccacacccaaga Alignment from GeneWise GTGGCGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTGGGCCAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG ctaggcccagactagcatgagcatgctatgtgtgtgtggttcttttcaagTGTGTGTG---AAGAGGAGCCCACCAGTGGGTGGTGAGGAGGCAGGTAACATCACCTTGGGGCAGTACCTCCGGCAACTGGCACACCACCAGAACTTCCTATGGTTTGTGGGTATGGATTTGGTGCAGgtatgtcaacccatccctcacctctctgtcagcctctgccacacccaaga #### Trpt1_ID1980_3 --> 2 - 0 Original Alignment atGGCTTTGTGCCCCTGCAA-GCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTCGTGGTCAATACCAACGAAAAGCAGCGGTTTACCCTGCAGCCAGGCGAGCCGAGCACTGGGCTCCTCATCAGGGCCAATCAGGGCCACTCCCTACAA ccctctctcctcagcattttatcagcagtacacgctgtgtccttccacagatGGATTCGTGCCCCTACAACGCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTTGTGGCAAATACCAATGAGAAGCAGCGATTTACTCTACAGCCAGGCAAGCCAAGTACTGGGCTCCTCATCAGGGCAAATCAGGGACACTCCCTACAAgtaagaggcaatatgtgggtgaggagtcagatcttgtttgaatgcatgaa Alignment from CESAR atGGCTTTGTGCCCCTGCAA-GCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTCGTGGTCAATACCAACGAAAAGCAGCGGTTTACCCTGCAGCCAGGCGAGCCGAGCACTGGGCTCCTCATCAGGGCCAATCAGGGCCACTCCCTACAA ccctctctcctcagcattttatcagcagtacacgctgtgtccttccacagatGGATTCGTGCCCCTACAACGCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTTGTGGCAAATACCAATGAGAAGCAGCGATTTACTCTACAGCCAGGCAAGCCAAGTACTGGGCTCCTCATCAGGGCAAATCAGGGACACTCCCTACAAgtaagaggcaatatgtgggtgaggagtcagatcttgtttgaatgcatgaa Alignment from Spaln_aa2Genome ATGGCTTTGTGCCCCTGCAA-GCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTCGTGGTCAATACCAACGAAAAGCAGCGGTTTACCCTGCAGCCAGGCGAGCCGAGCACTGGGCTCCTCATCAGGGCCAATCAGGGCCACTCCCTACAA ccctctctcctcagcattttatcagcagtacacgctgtgtccttccacagATGGATTCGTGCCCCTACAAcGCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTTGTGGCAAATACCAATGAGAAGCAGCGATTTACTCTACAGCCAGGCAAGCCAAGTACTGGGCTCCTCATCAGGGCAAATCAGGGACACTCCCTACAAgtaagaggcaatatgtgggtgaggagtcagatcttgtttgaatgcatgaa Alignment from Spaln_nt2Genome ATGGCTTTGTGCCCCTGCAA-GCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTCGTGGTCAATACCAACGAAAAGCAGCGGTTTACCCTGCAGCCAGGCGAGCCGAGCACTGGGCTCCTCATCAGGGCCAATCAGGGCCACTCCCTACAA ccctctctcctcagcattttatcagcagtacacgctgtgtccttccacagATGGATTCGTGCCCCTACAACGCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTTGTGGCAAATACCAATGAGAAGCAGCGATTTACTCTACAGCCAGGCAAGCCAAGTACTGGGCTCCTCATCAGGGCAAATCAGGGACACTCCCTACAAgtaagaggcaatatgtgggtgaggagtcagatcttgtttgaatgcatgaa Alignment from Pairagon ATGGCTTTGTGCCCCTGCAA-GCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTCGTGGTCAATACCAACGAAAAGCAGCGGTTTACCCTGCAGCCAGGCGAGCCGAGCACTGGGCTCCTCATCAGGGCCAATCAGGGCCACTCCCTACAA ccctctctcctcagcattttatcagcagtacacgctgtgtccttccacagATGGATTCGTGCCCCTACAACGCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTTGTGGCAAATACCAATGAGAAGCAGCGATTTACTCTACAGCCAGGCAAGCCAAGTACTGGGCTCCTCATCAGGGCAAATCAGGGACACTCCCTACAAgtaagaggcaatatgtgggtgaggagtcagatcttgtttgaatgcatgaa Alignment from Exonerate_protein2genome ATGGCTTTGTGCCCCTGCAA-GCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTCGTGGTCAATACCAACGAAAAGCAGCGGTTTACCCTGCAGCCAGGCGAGCCGAGCACTGGGCTCCTCATCAGGGCCAATCAGGGCCACTCCCTACAA ccctctctcctcagcattttatcagcagtacacgctgtgtccttccacagATGGATTCGTGCCCCTACAACGCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTTGTGGCAAATACCAATGAGAAGCAGCGATTTACTCTACAGCCAGGCAAGCCAAGTACTGGGCTCCTCATCAGGGCAAATCAGGGACACTCCCTACAAgtaagaggcaatatgtgggtgaggagtcagatcttgtttgaatgcatgaa Alignment from Exonerate_coding2genome ATGGCTTTGTGCCCCTGCAA-GCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTCGTGGTCAATACCAACGAAAAGCAGCGGTTTACCCTGCAGCCAGGCGAGCCGAGCACTGGGCTCCTCATCAGGGCCAATCAGGGCCACTCCCTACAA ccctctctcctcagcattttatcagcagtacacgctgtgtccttccacagATGGATTCGTGCCCCTACAACGCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTTGTGGCAAATACCAATGAGAAGCAGCGATTTACTCTACAGCCAGGCAAGCCAAGTACTGGGCTCCTCATCAGGGCAAATCAGGGACACTCCCTACAAgtaagaggcaatatgtgggtgaggagtcagatcttgtttgaatgcatgaa Alignment from GeneWise ATGGCTTTGTGCCCCTGCAA-GCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTCGTGGTCAATACCAACGAAAAGCAGCGGTTTACCCTGCAGCCAGGCGAGCCGAGCACTGGGCTCCTCATCAGGGCCAATCAGGGCCACTCCCTACAA ccctctctcctcagcattttatcagcagtacacgctgtgtccttccacagATGGATTCGTGCCCCTACAACGCCCTCCTGCAGCTGCCCCAGTTCCACAGCTTTTCCATTGAAGATGTGCAGCTTGTGGCAAATACCAATGAGAAGCAGCGATTTACTCTACAGCCAGGCAAGCCAAGTACTGGGCTCCTCATCAGGGCAAATCAGGGACACTCCCTACAAgtaagaggcaatatgtgggtgaggagtcagatcttgtttgaatgcatgaa #### Tut1_ID2554_7 --> 2 - 1 Original Alignment gaGGTGGCCCCCTTCTCAATAACTACGCC-TTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAg tggtcttgtaaatagctactttccaactttgcccatctcttgtgctgtaggaGGTGGCCCCCTCCTCAATAACTAT---CGTAACCTTGTTGGTTATCTACTTGCTTCAGACTAGAGACCCTCCAGTGCTTCCTACTGTGGCCCAGCTAACCCAGAGGGCAggtaagtaatggcctctacaatccggatcacagcttcactctggcaatgcc Alignment from CESAR gaGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAg tggtcttgtaaatagctactttccaactttgcccatctcttgtgctgtaggaGGTGGCCCCCTCCTCAATAACTAT--CGTAACCTTGTTGGTTATCTACTTGCTTCAGACTAGAGACCCTCCAGTGCTTCCTACTGTGGCCCAGCTAACCCAGAGGGCAggtaagtaatggcctctacaatccggatcacagcttcactctggcaatgcc Alignment from Spaln_aa2Genome GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG tggtcttgtaaatagctactttccaactttgcccatctcttgtgctgtagGAGGTGGCCCCCTCCTCAATAACTATC--GTAACCTTGTTGGTTATCTACTTGCTTCAGACTAGAGACCCTCCAGTGCTTCCTACTGTGGCCCAGCTAACCCAGAGGGCAGgtaagtaatggcctctacaatccggatcacagcttcactctggcaatgcc Alignment from Spaln_nt2Genome GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG tggtcttgtaaatagctactttccaactttgcccatctcttgtgctgtagGAGGTGGCCCCCTCCTCAATAACTA--TCGTAACCTTGTTGGTTATCTACTTGCTTCAGACTAGAGACCCTCCAGTGCTTCCTACTGTGGCCCAGCTAACCCAGAGGGCAGgtaagtaatggcctctacaatccggatcacagcttcactctggcaatgcc Alignment from Pairagon GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG tggtcttgtaaatagctactttccaactttgcccatctcttgtgctgtagGAGGTGGCCCCCTCCTCAATAACTA--TCGTAACCTTGTTGGTTATCTACTTGCTTCAGACTAGAGACCCTCCAGTGCTTCCTACTGTGGCCCAGCTAACCCAGAGGGCAGgtaagtaatggcctctacaatccggatcacagcttcactctggcaatgcc Alignment from Exonerate_protein2genome GAGGTGGCCCCCTTCTCAATAACTAC-GCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG tggtcttgtaaatagctactttccaactttgcccatctcttgtgctgtagGAGGTGGCCCCCTCCTCAATAACTATC---GTAACCTTGTTGGTTATCTACTTGCTTCAGACTAGAGACCCTCCAGTGCTTCCTACTGTGGCCCAGCTAACCCAGAGGGCAGgtaagtaatggcctctacaatccggatcacagcttcactctggcaatgcc Alignment from Exonerate_coding2genome GAGGTGGCCCCCTTCTCAATAACTAC-GCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG tggtcttgtaaatagctactttccaactttgcccatctcttgtgctgtagGAGGTGGCCCCCTCCTCAATAACTATC---GTAACCTTGTTGGTTATCTACTTGCTTCAGACTAGAGACCCTCCAGTGCTTCCTACTGTGGCCCAGCTAACCCAGAGGGCAGgtaagtaatggcctctacaatccggatcacagcttcactctggcaatgcc Alignment from GeneWise GAGGTGGCCCCCTTCTCAATAACTACGCCTTGACGTTGTTAGTGATCTACTTCCTTCAGACCAGAGACCCTCCAGTACTTCCTACTGTGGCCCAGCTTACCCAGAGAGCAG tggtcttgtaaatagctactttccaactttgcccatctcttgtgctgtagGAGGTGGCCCCCTCCTCAATAACTATC--GTAACCTTGTTGGTTATCTACTTGCTTCAGACTAGAGACCCTCCAGTGCTTCCTACTGTGGCCCAGCTAACCCAGAGGGCAGgtaagtaatggcctctacaatccggatcacagcttcactctggcaatgcc #### Ubxn1_ID2439_3 --> 1 - 1 Original Alignment gCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCA-GAGCAAGTTGGCCCTGAAg gccaatccacaaggtgggccccagaatatcctctacctcctgtcctgcaggCTGATGGAGCATGAAGATGACCCTGATGTGGATGAGCCTCTGGAGACTTCCCTCAGCCATGTCTTGGGACGAAAACCCAAGCCCTCACGAGCAAGTTGGCCCTGAAggtaaagattgggacacatcttggttttgcaaccttaaaagggccctgaca Alignment from CESAR gCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCA-GAGCAAGTTGGCCCTGAAg gccaatccacaaggtgggccccagaatatcctctacctcctgtcctgcaggCTGATGGAGCATGAAGATGACCCTGATGTGGATGAGCCTCTGGAGACTTCCCTCAGCCATGTCTTGGGACGAAAACCCAAGCCCTCACGAGCAAGTTGGCCCTGAAggtaaagattgggacacatcttggttttgcaaccttaaaagggccctgaca Alignment from Spaln_aa2Genome GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCA-GAGCAAGTTGGCCCTGAAG gccaatccacaaggtgggccccagaatatcctctacctcctgtcctgcagGCTGATGGAGCATGAAGATGACCCTGATGTGGATGAGCCTCTGGAGACTTCCCTCAGCCATGTCTTGGGACGAAAACCCAAGCCCTCAcGAGCAAGTTGGCCCTGAAGgtaaagattgggacacatcttggttttgcaaccttaaaagggccctgaca Alignment from Spaln_nt2Genome GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCA-GAGCAAGTTGGCCCTGAAG gccaatccacaaggtgggccccagaatatcctctacctcctgtcctgcagGCTGATGGAGCATGAAGATGACCCTGATGTGGATGAGCCTCTGGAGACTTCCCTCAGCCATGTCTTGGGACGAAAACCCAAGCCCTCACGAGCAAGTTGGCCCTGAAGgtaaagattgggacacatcttggttttgcaaccttaaaagggccctgaca Alignment from Pairagon GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCA-GAGCAAGTTGGCCCTGAAG gccaatccacaaggtgggccccagaatatcctctacctcctgtcctgcagGCTGATGGAGCATGAAGATGACCCTGATGTGGATGAGCCTCTGGAGACTTCCCTCAGCCATGTCTTGGGACGAAAACCCAAGCCCTCACGAGCAAGTTGGCCCTGAAGgtaaagattgggacacatcttggttttgcaaccttaaaagggccctgaca Alignment from Exonerate_protein2genome GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCA-GAGCAAGTTGGCCCTGAAG gccaatccacaaggtgggccccagaatatcctctacctcctgtcctgcagGCTGATGGAGCATGAAGATGACCCTGATGTGGATGAGCCTCTGGAGACTTCCCTCAGCCATGTCTTGGGACGAAAACCCAAGCCCTCACGAGCAAGTTGGCCCTGAAGgtaaagattgggacacatcttggttttgcaaccttaaaagggccctgaca Alignment from Exonerate_coding2genome GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCCTCA-GAGCAAGTTGGCCCTGAAG gccaatccacaaggtgggccccagaatatcctctacctcctgtcctgcagGCTGATGGAGCATGAAGATGACCCTGATGTGGATGAGCCTCTGGAGACTTCCCTCAGCCATGTCTTGGGACGAAAACCCAAGCCCTCACGAGCAAGTTGGCCCTGAAGgtaaagattgggacacatcttggttttgcaaccttaaaagggccctgaca Alignment from GeneWise GCTGATGGAGCATGAAGACGACCCCGATGTGGATGAGCCTCTGGAGACTCCCCTCAGCCATGTCCTGGGACGAGAACCCACGCCC-TCAGAGCAAGTTGGCCCTGAAG gccaatccacaaggtgggccccagaatatcctctacctcctgtcctgcagGCTGATGGAGCATGAAGATGACCCTGATGTGGATGAGCCTCTGGAGACTTCCCTCAGCCATGTCTTGGGACGAAAACCCAAGCCCTCACGAGCAAGTTGGCCCTGAAGgtaaagattgggacacatcttggttttgcaaccttaaaagggccctgaca #### Unc93b1_ID215_6 --> 0 - 1 Original Alignment TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTAT-GACCTGAACCACACACTGATCAACGTGCAGAGCTGCg tgcagtgaaagtatggtgtaggcttcaaactattttacttatatttatagTTGAGCTTCACATGTGCTCAGCTGCCAATGATTTACTTCCTCAACAACTATCTGTATCGACTTGAACCATACACTCATCAATGTACAGATATGTggtaggtctgtgggacctagaagcttggccttcgtttcttacacaattaat Alignment from CESAR TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTAT-GACCTGAACCACACACTGATCAACGTGCAGAGCTGCg tgcagtgaaagtatggtgtaggcttcaaactattttacttatatttatagTTGAGCTTCACATGTGCTCAGCTGCCAATGATTTACTTCCTCAACAACTATCTGTATCGACTTGAACCATACACTCATCAATGTACAGATATGTggtaggtctgtgggacctagaagcttggccttcgtttcttacacaattaat Alignment from Spaln_aa2Genome TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTG-AACCACACACTGATCAACGTGCAGAGCTGCG tgcagtgaaagtatggtgtaggcttcaaactattttacttatatttatagTTGAGCTTCACATGTGCTCAGCTGCCAATGATTTACTTCCTCAACAACTATCTGTATCGACTTgAACCATACACTCATCAATGTACAGATATGTGgtaggtctgtgggacctagaagcttggccttcgtttcttacacaattaat Alignment from Spaln_nt2Genome TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTAT-GACCTGAACCACACACTGATCAACGTGCAGAGCTGCG tgcagtgaaagtatggtgtaggcttcaaactattttacttatatttatagTTGAGCTTCACATGTGCTCAGCTGCCAATGATTTACTTCCTCAACAACTATCTGTATCGACTTGAACCATACACTCATCAATGTACAGATATGTGgtaggtctgtgggacctagaagcttggccttcgtttcttacacaattaat Alignment from Pairagon TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTAT-GACCTGAACCACACACTGATCAACGTGCAGAGCTGCG tgcagtgaaagtatggtgtaggcttcaaactattttacttatatttatagTTGAGCTTCACATGTGCTCAGCTGCCAATGATTTACTTCCTCAACAACTATCTGTATCGACTTGAACCATACACTCATCAATGTACAGATATGTGgtaggtctgtgggacctagaagcttggccttcgtttcttacacaattaat Alignment from Exonerate_protein2genome TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTAT-GACCTGAACCACACACTGATCAACGTGCAGAGCTGCG tgcagtgaaagtatggtgtaggcttcaaactattttacttatatttatagTTGAGCTTCACATGTGCTCAGCTGCCAATGATTTACTTCCTCAACAACTATCTGTATCGACTTGAACCATACACTCATCAATGTACAGATATGTGgtaggtctgtgggacctagaagcttggccttcgtttcttacacaattaat Alignment from Exonerate_coding2genome TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTAT-GACCTGAACCACACACTGATCAACGTGCAGAGCTGCG tgcagtgaaagtatggtgtaggcttcaaactattttacttatatttatagTTGAGCTTCACATGTGCTCAGCTGCCAATGATTTACTTCCTCAACAACTATCTGTATCGACTTGAACCATACACTCATCAATGTACAGATATGTGgtaggtctgtgggacctagaagcttggccttcgtttcttacacaattaat Alignment from GeneWise TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTAT-GACCTGAACCACACACTGATCAACGTGCAGAGCTGCG tgcagtgaaagtatggtgtaggcttcaaactattttacttatatttatagTTGAGCTTCACATGTGCTCAGCTGCCAATGATTTACTTCCTCAACAACTATCTGTATCGACTTGAACCATACACTCATCAATGTACAGATATGTGgtaggtctgtgggacctagaagcttggccttcgtttcttacacaattaat #### Unc93b1_ID217_8 --> 0 - 0 Original Alignment GTGCTGGGCCTGTGTGGAGCCGCTTACCGGCCCACGGAAGAGATCGACCTGCGCAGCGTGGGCTGGGGCAACATCTTCCAGCTGCCCTTCAAACACGTGCGTGACTTTCGCTTACGCCATCTGGTGCCC-TTCTTTATCTACAGTGGCTTTGAGGTGCTCTTTGCCTGCACTGGTTTTGCCCTG tatctagaatgggatacctgttatagaccatttttttttcttttaaacagGTCCTGGGCCTGTGTGGAGCAGCTTACCGGACCACGGAGGAGATCGACCTGCGTAGTGTGGGCTGGGGTAACATCTTCCAGTTGCCCTTCAAGCATGTACATGACTTTTGCTTACGGCACCTGGTGCCACTTCTTTATCTACAGTGGATTTGAGGTGCTCTTTGCCTGTACTGGTTTTGCACTCgtgagtgcagcactggtaataacacacaatacaggtggctcatatggcta Alignment from CESAR GTGCTGGGCCTGTGTGGAGCCGCTTACCGGCCCACGGAAGAGATCGACCTGCGCAGCGTGGGCTGGGGCAACATCTTCCAGCTGCCCTTCAAACACGTGCGTGACTTTCGCTTACGCCATCTGGTGCCC-TTCTTTATCTACAGTGGCTTTGAGGTGCTCTTTGCCTGCACTGGTTTTGCCCTG tatctagaatgggatacctgttatagaccatttttttttcttttaaacagGTCCTGGGCCTGTGTGGAGCAGCTTACCGGACCACGGAGGAGATCGACCTGCGTAGTGTGGGCTGGGGTAACATCTTCCAGTTGCCCTTCAAGCATGTACATGACTTTTGCTTACGGCACCTGGTGCCACTTCTTTATCTACAGTGGATTTGAGGTGCTCTTTGCCTGTACTGGTTTTGCACTCgtgagtgcagcactggtaataacacacaatacaggtggctcatatggcta Alignment from Spaln_aa2Genome GTGCTGGGCCTGTGTGGAGCCGCTTACCGGCCCACGGAAGAGATCGACCTGCGCAGCGTGGGCTGGGGCAACATCTTCCAGCTGCCCTTCAAACACGTGCGTGACTTTCGCTTACGCCATCTGGTGCCC-TTCTTTATCTACAGTGGCTTTGAGGTGCTCTTTGCCTGCACTGGTTTTGCCCTG tatctagaatgggatacctgttatagaccatttttttttcttttaaacagGTCCTGGGCCTGTGTGGAGCAGCTTACCGGACCACGGAGGAGATCGACCTGCGTAGTGTGGGCTGGGGTAACATCTTCCAGTTGCCCTTCAAGCATGTACATGACTTTTGCTTACGGCACCTGGTGCCAcTTCTTTATCTACAGTGGATTTGAGGTGCTCTTTGCCTGTACTGGTTTTGCACTCgtgagtgcagcactggtaataacacacaatacaggtggctcatatggcta Alignment from Spaln_nt2Genome GTGCTGGGCCTGTGTGGAGCCGCTTACCGGCCCACGGAAGAGATCGACCTGCGCAGCGTGGGCTGGGGCAACATCTTCCAGCTGCCCTTCAAACACGTGCGTGACTTTCGCTTACGCCATCTGGTGCC-CTTCTTTATCTACAGTGGCTTTGAGGTGCTCTTTGCCTGCACTGGTTTTGCCCTG tatctagaatgggatacctgttatagaccatttttttttcttttaaacagGTCCTGGGCCTGTGTGGAGCAGCTTACCGGACCACGGAGGAGATCGACCTGCGTAGTGTGGGCTGGGGTAACATCTTCCAGTTGCCCTTCAAGCATGTACATGACTTTTGCTTACGGCACCTGGTGCCACTTCTTTATCTACAGTGGATTTGAGGTGCTCTTTGCCTGTACTGGTTTTGCACTCgtgagtgcagcactggtaataacacacaatacaggtggctcatatggcta Alignment from Pairagon GTGCTGGGCCTGTGTGGAGCCGCTTACCGGCCCACGGAAGAGATCGACCTGCGCAGCGTGGGCTGGGGCAACATCTTCCAGCTGCCCTTCAAACACGTGCGTGACTTTCGCTTACGCCATCTGGTGCC-CTTCTTTATCTACAGTGGCTTTGAGGTGCTCTTTGCCTGCACTGGTTTTGCCCTG tatctagaatgggatacctgttatagaccatttttttttcttttaaacagGTCCTGGGCCTGTGTGGAGCAGCTTACCGGACCACGGAGGAGATCGACCTGCGTAGTGTGGGCTGGGGTAACATCTTCCAGTTGCCCTTCAAGCATGTACATGACTTTTGCTTACGGCACCTGGTGCCACTTCTTTATCTACAGTGGATTTGAGGTGCTCTTTGCCTGTACTGGTTTTGCACTCgtgagtgcagcactggtaataacacacaatacaggtggctcatatggcta Alignment from Exonerate_protein2genome GTGCTGGGCCTGTGTGGAGCCGCTTACCGGCCCACGGAAGAGATCGACCTGCGCAGCGTGGGCTGGGGCAACATCTTCCAGCTGCCCTTCAAACACGTGCGTGACTTTCGCTTACGCCATCTGGTGCCC-TTCTTTATCTACAGTGGCTTTGAGGTGCTCTTTGCCTGCACTGGTTTTGCCCTG tatctagaatgggatacctgttatagaccatttttttttcttttaaacagGTCCTGGGCCTGTGTGGAGCAGCTTACCGGACCACGGAGGAGATCGACCTGCGTAGTGTGGGCTGGGGTAACATCTTCCAGTTGCCCTTCAAGCATGTACATGACTTTTGCTTACGGCACCTGGTGCCACTTCTTTATCTACAGTGGATTTGAGGTGCTCTTTGCCTGTACTGGTTTTGCACTCgtgagtgcagcactggtaataacacacaatacaggtggctcatatggcta Alignment from Exonerate_coding2genome GTGCTGGGCCTGTGTGGAGCCGCTTACCGGCCCACGGAAGAGATCGACCTGCGCAGCGTGGGCTGGGGCAACATCTTCCAGCTGCCCTTCAAACACGTGCGTGACTTTCGCTTACGCCATCTGGTGCCC-TTCTTTATCTACAGTGGCTTTGAGGTGCTCTTTGCCTGCACTGGTTTTGCCCTG tatctagaatgggatacctgttatagaccatttttttttcttttaaacagGTCCTGGGCCTGTGTGGAGCAGCTTACCGGACCACGGAGGAGATCGACCTGCGTAGTGTGGGCTGGGGTAACATCTTCCAGTTGCCCTTCAAGCATGTACATGACTTTTGCTTACGGCACCTGGTGCCACTTCTTTATCTACAGTGGATTTGAGGTGCTCTTTGCCTGTACTGGTTTTGCACTCgtgagtgcagcactggtaataacacacaatacaggtggctcatatggcta Alignment from GeneWise GTGCTGGGCCTGTGTGGAGCCGCTTACCGGCCCACGGAAGAGATCGACCTGCGCAGCGTGGGCTGGGGCAACATCTTCCAGCTGCCCTTCAAACACGTGCGTGACTTTCGCTTACGCCATCTGGTGCCC-TTCTTTATCTACAGTGGCTTTGAGGTGCTCTTTGCCTGCACTGGTTTTGCCCTG tatctagaatgggatacctgttatagaccatttttttttcttttaaacagGTCCTGGGCCTGTGTGGAGCAGCTTACCGGACCACGGAGGAGATCGACCTGCGTAGTGTGGGCTGGGGTAACATCTTCCAGTTGCCCTTCAAGCATGTACATGACTTTTGCTTACGGCACCTGGTGCCACTTCTTTATCTACAGTGGATTTGAGGTGCTCTTTGCCTGTACTGGTTTTGCACTCgtgagtgcagcactggtaataacacacaatacaggtggctcatatggcta #### Vegfb_ID1955_5 --> 1 - 2 Original Alignment aCCAAAAAAAAAGGAG-AGTGCTGTGAAGCCAGACag tacacaagtgtgagaggtttgggtctgtatatctacccacatttttctagaCCTAAAAAGAAGGAGCACTACTGTGAGGCCCGACcggtaagagttttccatccctcaatgctggttagtgagagggaggccatttg Alignment from CESAR aCCAAAAAAAAAGGAG-AGTGCTGTGAAGCCAGACag tacacaagtgtgagaggtttgggtctgtatatctacccacatttttctagaCCTAAAAAGAAGGAGCACTACTGTGAGGCCCGACcggtaagagttttccatccctcaatgctggttagtgagagggaggccatttg Alignment from Spaln_aa2Genome ACCAAAAAAAAAGGAG-AGTGCTGTGAAGCCAGACAG tacacaagtgtgagaggtttgggtctgtatatctacccacatttttctagACCTAAAAAGAAGGAGcACTACTGTGAGGCCCGACCGgtaagagttttccatccctcaatgctggttagtgagagggaggccatttg Alignment from Spaln_nt2Genome ACCAAAAAAAAAGGAG-AGTGCTGTGAAGCCAGACAG tacacaagtgtgagaggtttgggtctgtatatctacccacatttttctagACCTAAAAAGAAGGAGCACTACTGTGAGGCCCGACCGgtaagagttttccatccctcaatgctggttagtgagagggaggccatttg Alignment from Pairagon ACCAAAAAAAAAGGAG-AGTGCTGTGAAGCCAGACAG tacacaagtgtgagaggtttgggtctgtatatctacccacatttttctagACCTAAAAAGAAGGAGCACTACTGTGAGGCCCGACCGgtaagagttttccatccctcaatgctggttagtgagagggaggccatttg Alignment from Exonerate_protein2genome ACCAAAAAAAAAGGAG-AGTGCTGTGAAGCCAGACAG tacacaagtgtgagaggtttgggtctgtatatctacccacatttttctagACCTAAAAAGAAGGAGCACTACTGTGAGGCCCGACCGgtaagagttttccatccctcaatgctggttagtgagagggaggccatttg Alignment from Exonerate_coding2genome tacacaagtgtgagaggtttgggtctgtatatctacccacatttttctagacctaaaaagaaggagcactactgtgaggcccgaccggtaagagttttccatccctcaatgctggttagtgagagggaggccatttg Alignment from GeneWise tacacaagtgtgagaggtttgggtctgtatatctacccacatttttctagacctaaaaagaaggagcactactgtgaggcccgaccggtaagagttttccatccctcaatgctggttagtgagagggaggccatttg #### Vldlr_ID5807_6 --> 2 - 1 Original Alignment ctTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGC-AGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACg cagaagcgggcacttgcctccttctttccctgtcccatgtctgcttccagctTCTCAAACCTGCAGACCTGATCATTTTGAATGTGAAGATGGTACTTGCATCCATGGTAGCCAGACAATGCAATGGCATCCAGGACTGTGTTGATGGATCTGATGAAGTAAACTGTAGAAACagtcatcgtctctttttgattgagtggggctgcacctctgtcagaagagca Alignment from CESAR ctTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGC-AGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACg cagaagcgggcacttgcctccttctttccctgtcccatgtctgcttccagctTCTCAAACCTGCAGACCTGATCATTTTGAATGTGAAGATGGTACTTGCATCCATGGTAGCCAGACAATGCAATGGCATCCAGGACTGTGTTGATGGATCTGATGAAGTAAACTGTAGAAACagtcatcgtctctttttgattgagtggggctgcacctctgtcagaagagca Alignment from Spaln_aa2Genome CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGC-AGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACG cagaagcgggcacttgcctccttctttccctgtcccatgtctgcttccagCTTCTCAAACCTGCAGACCTGATCATTTTGAATGTGAAGATGGTACTTGCATCCATGGTAGCcAGACAATGCAATGGCATCCAGGACTGTGTTGATGGATCTGATGAAGTAAACTGTAGAAACAgtcatcgtctctttttgattgagtggggctgcacctctgtcagaagagca Alignment from Spaln_nt2Genome CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGC-AGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACG cagaagcgggcacttgcctccttctttccctgtcccatgtctgcttccagCTTCTCAAACCTGCAGACCTGATCATTTTGAATGTGAAGATGGTACTTGCATCCATGGTAGCCAGACAATGCAATGGCATCCAGGACTGTGTTGATGGATCTGATGAAGTAAACTGTAGAAACAgtcatcgtctctttttgattgagtggggctgcacctctgtcagaagagca Alignment from Pairagon CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAG-CAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAAC--------------------------------------------------- cagaagcgggcacttgcctccttctttccctgtcccatgtctgcttccagCTTCTCAAACCTGCAGACCTGATCATTTTGAATGTGAAGATGGTACTTGCATCCATGGTAGCCAGACAATGCAATGGCATCCAGGACTGTGTTGATGGATCTGATGAAGTAAACTGTAGAAACAGTCATCGTCTCTTTTTGATTGAGTGGGGCTGCACCTCTGTCAGAAGAGCA Alignment from Exonerate_protein2genome CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGC-AGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACG cagaagcgggcacttgcctccttctttccctgtcccatgtctgcttccagCTTCTCAAACCTGCAGACCTGATCATTTTGAATGTGAAGATGGTACTTGCATCCATGGTAGCCAGACAATGCAATGGCATCCAGGACTGTGTTGATGGATCTGATGAAGTAAACTGTAGAAACAgtcatcgtctctttttgattgagtggggctgcacctctgtcagaagagca Alignment from Exonerate_coding2genome CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGC-AGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACG cagaagcgggcacttgcctccttctttccctgtcccatgtctgcttccagCTTCTCAAACCTGCAGACCTGATCATTTTGAATGTGAAGATGGTACTTGCATCCATGGTAGCCAGACAATGCAATGGCATCCAGGACTGTGTTGATGGATCTGATGAAGTAAACTGTAGAAACAgtcatcgtctctttttgattgagtggggctgcacctctgtcagaagagca Alignment from GeneWise CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGC-AGCAGGCAATGCAATGGCATCCGAGACTGTGTTGATGGCTCTGATGAAGTCAACTGCAAAAACG cagaagcgggcacttgcctccttctttccctgtcccatgtctgcttccagCTTCTCAAACCTGCAGACCTGATCATTTTGAATGTGAAGATGGTACTTGCATCCATGGTAGCCAGACAATGCAATGGCATCCAGGACTGTGTTGATGGATCTGATGAAGTAAACTGTAGAAACAgtcatcgtctctttttgattgagtggggctgcacctctgtcagaagagca #### Vps13a_ID4059_64 --> 0 - 1 Original Alignment GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGA-TTGAAAGCACTAGTTGGTGGAGCCGTTg cacagtgatgtcactccaggtctttattcctcactctgcctcccccgcagGGGGCTATCCAAGGTCCTGAAGAATTTGTGGCGGGAATGGCATTAGGACTTAAAAGCACTAGTTGGTGGAGCCGTTggtaagcagcaagagaactagtgacactagtcacaccagtgatgactgggc Alignment from CESAR GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGA-TTGAAAGCACTAGTTGGTGGAGCCGTTg cacagtgatgtcactccaggtctttattcctcactctgcctcccccgcagGGGGCTATCCAAGGTCCTGAAGAATTTGTGGCGGGAATGGCATTAGGACTTAAAAGCACTAGTTGGTGGAGCCGTTggtaagcagcaagagaactagtgacactagtcacaccagtgatgactgggc Alignment from Spaln_aa2Genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGA-TTGAAAGCACTAGTTGGTGGAGCCGTTG cacagtgatgtcactccaggtctttattcctcactctgcctcccccgcagGGGGCTATCCAAGGTCCTGAAGAATTTGTGGCGGGAATGGCATTAGGAcTTAAAAGCACTAGTTGGTGGAGCCGTTGgtaagcagcaagagaactagtgacactagtcacaccagtgatgactgggc Alignment from Spaln_nt2Genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGA-TTGAAAGCACTAGTTGGTGGAGCCGTTG cacagtgatgtcactccaggtctttattcctcactctgcctcccccgcagGGGGCTATCCAAGGTCCTGAAGAATTTGTGGCGGGAATGGCATTAGGACTTAAAAGCACTAGTTGGTGGAGCCGTTGgtaagcagcaagagaactagtgacactagtcacaccagtgatgactgggc Alignment from Pairagon GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGA-TTGAAAGCACTAGTTGGTGGAGCCGTTG cacagtgatgtcactccaggtctttattcctcactctgcctcccccgcagGGGGCTATCCAAGGTCCTGAAGAATTTGTGGCGGGAATGGCATTAGGACTTAAAAGCACTAGTTGGTGGAGCCGTTGgtaagcagcaagagaactagtgacactagtcacaccagtgatgactgggc Alignment from Exonerate_protein2genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGA-TTGAAAGCACTAGTTGGTGGAGCCGTTG cacagtgatgtcactccaggtctttattcctcactctgcctcccccgcagGGGGCTATCCAAGGTCCTGAAGAATTTGTGGCGGGAATGGCATTAGGACTTAAAAGCACTAGTTGGTGGAGCCGTTGgtaagcagcaagagaactagtgacactagtcacaccagtgatgactgggc Alignment from Exonerate_coding2genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGA-TTGAAAGCACTAGTTGGTGGAGCCGTTG cacagtgatgtcactccaggtctttattcctcactctgcctcccccgcagGGGGCTATCCAAGGTCCTGAAGAATTTGTGGCGGGAATGGCATTAGGACTTAAAAGCACTAGTTGGTGGAGCCGTTGgtaagcagcaagagaactagtgacactagtcacaccagtgatgactgggc Alignment from GeneWise GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTGAAA-GCACTAGTTGGTGGAGCCGTTG cacagtgatgtcactccaggtctttattcctcactctgcctcccccgcagGGGGCTATCCAAGGTCCTGAAGAATTTGTGGCGGGAATGGCATTAGGACTTAAAAGCACTAGTTGGTGGAGCCGTTGgtaagcagcaagagaactagtgacactagtcacaccagtgatgactgggc #### Vps13a_ID4074_49 --> 0 - 0 Original Alignment GTTCAGCTTATGGTAACT-GATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGCAAAGGTCTGAAAATGGAATACCAA tagaaatattttattcattaattgtaggatctttttttcttctttttaagGTTCAGCTTATGGTAACTCGATAGTGAGCTTTCAGATCAATTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGTAAAGGTCTGAAAATGGAATACCAAgtaagtttctcctgtgccttaaggaacttctggatacagtatagctacca Alignment from CESAR GTTCAGCTTATGGTAACT-GATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGCAAAGGTCTGAAAATGGAATACCAA tagaaatattttattcattaattgtaggatctttttttcttctttttaagGTTCAGCTTATGGTAACTCGATAGTGAGCTTTCAGATCAATTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGTAAAGGTCTGAAAATGGAATACCAAgtaagtttctcctgtgccttaaggaacttctggatacagtatagctacca Alignment from Spaln_aa2Genome GTTCAGCTTATGGTAACT-GATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGCAAAGGTCTGAAAATGGAATACCAA tagaaatattttattcattaattgtaggatctttttttcttctttttaagGTTCAGCTTATGGTAACTcGATAGTGAGCTTTCAGATCAATTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGTAAAGGTCTGAAAATGGAATACCAAgtaagtttctcctgtgccttaaggaacttctggatacagtatagctacca Alignment from Spaln_nt2Genome GTTCAGCTTATGGTAACT-GATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGCAAAGGTCTGAAAATGGAATACCAA tagaaatattttattcattaattgtaggatctttttttcttctttttaagGTTCAGCTTATGGTAACTCGATAGTGAGCTTTCAGATCAATTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGTAAAGGTCTGAAAATGGAATACCAAgtaagtttctcctgtgccttaaggaacttctggatacagtatagctacca Alignment from Pairagon GTTCAGCTTATGGTAACT-GATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGCAAAGGTCTGAAAATGGAATACCAA tagaaatattttattcattaattgtaggatctttttttcttctttttaagGTTCAGCTTATGGTAACTCGATAGTGAGCTTTCAGATCAATTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGTAAAGGTCTGAAAATGGAATACCAAgtaagtttctcctgtgccttaaggaacttctggatacagtatagctacca Alignment from Exonerate_protein2genome GTTCAGCTTATGGTAACT-GATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGCAAAGGTCTGAAAATGGAATACCAA tagaaatattttattcattaattgtaggatctttttttcttctttttaagGTTCAGCTTATGGTAACTCGATAGTGAGCTTTCAGATCAATTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGTAAAGGTCTGAAAATGGAATACCAAgtaagtttctcctgtgccttaaggaacttctggatacagtatagctacca Alignment from Exonerate_coding2genome GTTCAGCTTATGGTAACT-GATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGCAAAGGTCTGAAAATGGAATACCAA tagaaatattttattcattaattgtaggatctttttttcttctttttaagGTTCAGCTTATGGTAACTCGATAGTGAGCTTTCAGATCAATTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGTAAAGGTCTGAAAATGGAATACCAAgtaagtttctcctgtgccttaaggaacttctggatacagtatagctacca Alignment from GeneWise GTTCAGCTTATGGTA-ACTGATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGCAAAGGTCTGAAAATGGAATACCAA tagaaatattttattcattaattgtaggatctttttttcttctttttaagGTTCAGCTTATGGTAACTCGATAGTGAGCTTTCAGATCAATTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGATGTAAAGGTCTGAAAATGGAATACCAAgtaagtttctcctgtgccttaaggaacttctggatacagtatagctacca #### Vwce_ID2964_18 --> 2 - 0 Original Alignment acTGTAACTTCGAAGGGAGAAAGGTAGTG-AATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG ccaatgaacccagctgaatattggtcatgttaagggtccccgcaacccagacTGTAACTTTGAAGGGAGAAAGGTAGTGCAATGGTCAGGTTTTCACCCTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtaagatggctagagaacctggggctatcagttgcataaaggaccctcat Alignment from CESAR acTGTAACTTCGAAGGGAGAAAGGTAGTG-AATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG ccaatgaacccagctgaatattggtcatgttaagggtccccgcaacccagacTGTAACTTTGAAGGGAGAAAGGTAGTGCAATGGTCAGGTTTTCACCCTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtaagatggctagagaacctggggctatcagttgcataaaggaccctcat Alignment from Spaln_aa2Genome ACTGTAACTTCGAAGGGAGAAAGGTAGTG-AATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG ccaatgaacccagctgaatattggtcatgttaagggtccccgcaacccagACTGTAACTTTGAAGGGAGAAAGGTAGTGcAATGGTCAGGTTTTCACCCTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtaagatggctagagaacctggggctatcagttgcataaaggaccctcat Alignment from Spaln_nt2Genome ACTGTAACTTCGAAGGGAGAAAGGTAGTG-AATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG ccaatgaacccagctgaatattggtcatgttaagggtccccgcaacccagACTGTAACTTTGAAGGGAGAAAGGTAGTGCAATGGTCAGGTTTTCACCCTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtaagatggctagagaacctggggctatcagttgcataaaggaccctcat Alignment from Pairagon ACTGTAACTTCGAAGGGAGAAAGGTAGTG-AATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG ccaatgaacccagctgaatattggtcatgttaagggtccccgcaacccagACTGTAACTTTGAAGGGAGAAAGGTAGTGCAATGGTCAGGTTTTCACCCTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtaagatggctagagaacctggggctatcagttgcataaaggaccctcat Alignment from Exonerate_protein2genome ACTGTAACTTCGAAGGGAGAAAGGTAGTG-AATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG ccaatgaacccagctgaatattggtcatgttaagggtccccgcaacccagACTGTAACTTTGAAGGGAGAAAGGTAGTGCAATGGTCAGGTTTTCACCCTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtaagatggctagagaacctggggctatcagttgcataaaggaccctcat Alignment from Exonerate_coding2genome ACTGTAACTTCGAAGGGAGAAAGGTAGTG-AATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG ccaatgaacccagctgaatattggtcatgttaagggtccccgcaacccagACTGTAACTTTGAAGGGAGAAAGGTAGTGCAATGGTCAGGTTTTCACCCTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtaagatggctagagaacctggggctatcagttgcataaaggaccctcat Alignment from GeneWise ACTGTAACTTCGAAGGGAGAAAGGTA-GTGAATGGTCAGGTGTTCACCTTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAG ccaatgaacccagctgaatattggtcatgttaagggtccccgcaacccagACTGTAACTTTGAAGGGAGAAAGGTAGTGCAATGGTCAGGTTTTCACCCTGGATGATGAGCCCTGTACCCGGTGCATCTGCCAGgtaagatggctagagaacctggggctatcagttgcataaaggaccctcat #### Wdr74_ID2312_2 --> 2 - 0 Original Alignment ggGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGG-CGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA cagttgctgtattttgtcatctcagtatgatctcttctctcggatttcagggGTGAACCTTCAGCGCAAACATACAGCTAATTTCGCTCCATTGGGACAGCCACGGCCGGGAGCAGGCAGTGAATGCTCTGTGCTGGGGCACCGGCAGTGAGACCCAAgtaggcaggctatggctcagccagagccataagagccatagaatgcctga Alignment from CESAR ggGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGG-CGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA cagttgctgtattttgtcatctcagtatgatctcttctctcggatttcagggGTGAACCTTCAGCGCAAACATACAGCTAATTTCGCTCCATTGGGACAGCCACGGCCGGGAGCAGGCAGTGAATGCTCTGTGCTGGGGCACCGGCAGTGAGACCCAAgtaggcaggctatggctcagccagagccataagagccatagaatgcctga Alignment from Spaln_aa2Genome GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGG-CGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA cagttgctgtattttgtcatctcagtatgatctcttctctcggatttcagGGGTGAACCTTCAGCGCAAACATACAGCTAATTTCGCTCCATTGGGACAGCCACGGcCGGGAGCAGGCAGTGAATGCTCTGTGCTGGGGCACCGGCAGTGAGACCCAAgtaggcaggctatggctcagccagagccataagagccatagaatgcctga Alignment from Spaln_nt2Genome GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGGC-GGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA cagttgctgtattttgtcatctcagtatgatctcttctctcggatttcagGGGTGAACCTTCAGCGCAAACATACAGCTAATTTCGCTCCATTGGGACAGCCACGGCCGGGAGCAGGCAGTGAATGCTCTGTGCTGGGGCACCGGCAGTGAGACCCAAgtaggcaggctatggctcagccagagccataagagccatagaatgcctga Alignment from Pairagon GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGG-CGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA cagttgctgtattttgtcatctcagtatgatctcttctctcggatttcagGGGTGAACCTTCAGCGCAAACATACAGCTAATTTCGCTCCATTGGGACAGCCACGGCCGGGAGCAGGCAGTGAATGCTCTGTGCTGGGGCACCGGCAGTGAGACCCAAgtaggcaggctatggctcagccagagccataagagccatagaatgcctga Alignment from Exonerate_protein2genome GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGG-CGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA cagttgctgtattttgtcatctcagtatgatctcttctctcggatttcagGGGTGAACCTTCAGCGCAAACATACAGCTAATTTCGCTCCATTGGGACAGCCACGGCCGGGAGCAGGCAGTGAATGCTCTGTGCTGGGGCACCGGCAGTGAGACCCAAgtaggcaggctatggctcagccagagccataagagccatagaatgcctga Alignment from Exonerate_coding2genome GGGTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGG-CGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA cagttgctgtattttgtcatctcagtatgatctcttctctcggatttcagGGGTGAACCTTCAGCGCAAACATACAGCTAATTTCGCTCCATTGGGACAGCCACGGCCGGGAGCAGGCAGTGAATGCTCTGTGCTGGGGCACCGGCAGTGAGACCCAAgtaggcaggctatggctcagccagagccataagagccatagaatgcctga Alignment from GeneWise ----------------------------------------------------GTGAACCTTCAGCGGAAACATGCGGCAAATTTCACACCGTCCGGACAGCCGCGG-CGGGAGGAGGCAGTGAATGCTCTGTGCTGGGGCACTGGCGGCGAGACCCAA CAGTTGCTGTATTTTGTCATCTCAGTATGATCTCTTCTCTCGGATTTCAGGGGTGAACCTTCAGCGCAAACATACAGCTAATTTCGCTCCATTGGGACAGCCACGGCCGGGAGCAGGCAGTGAATGCTCTGTGCTGGGGCACCGGCAGTGAGACCCAAgtaggcaggctatggctcagccagagccataagagccatagaatgcctga #### Wdr74_ID2315_5 --> 0 - 0 Original Alignment CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCT-GTATTCAGGGCCAAAAAT tctaatggataagttggtaaagcaaggatgacaagtttattttctcctagCTCTTAGAACTCAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCGAGATCCCACACATACACATGTTGTTGTCACATGTGGGAAGGAAAATGCTCTGAAAGTATGGGACTTACAGGGGTCTGAGGAGCCTCGTTTTTAGGGCCAAAAATgtgagtgggggataaaggattggtgaaataccattattaagggctggaga Alignment from CESAR CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCT-GTATTCAGGGCCAAAAAT tctaatggataagttggtaaagcaaggatgacaagtttattttctcctagCTCTTAGAACTCAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCGAGATCCCACACATACACATGTTGTTGTCACATGTGGGAAGGAAAATGCTCTGAAAGTATGGGACTTACAGGGGTCTGAGGAGCCTCGTTTTTAGGGCCAAAAATgtgagtgggggataaaggattggtgaaataccattattaagggctggaga Alignment from Spaln_aa2Genome CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCT-GTATTCAGGGCCAAAAAT tctaatggataagttggtaaagcaaggatgacaagtttattttctcctagCTCTTAGAACTCAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCGAGATCCCACACATACACATGTTGTTGTCACATGTGGGAAGGAAAATGCTCTGAAAGTATGGGACTTACAGGGGTCTGAGGAGCCTcGTTTTTAGGGCCAAAAATgtgagtgggggataaaggattggtgaaataccattattaagggctggaga Alignment from Spaln_nt2Genome CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCT-GTATTCAGGGCCAAAAAT tctaatggataagttggtaaagcaaggatgacaagtttattttctcctagCTCTTAGAACTCAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCGAGATCCCACACATACACATGTTGTTGTCACATGTGGGAAGGAAAATGCTCTGAAAGTATGGGACTTACAGGGGTCTGAGGAGCCTCGTTTTTAGGGCCAAAAATgtgagtgggggataaaggattggtgaaataccattattaagggctggaga Alignment from Pairagon CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCT-GTATTCAGGGCCAAAAAT tctaatggataagttggtaaagcaaggatgacaagtttattttctcctagCTCTTAGAACTCAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCGAGATCCCACACATACACATGTTGTTGTCACATGTGGGAAGGAAAATGCTCTGAAAGTATGGGACTTACAGGGGTCTGAGGAGCCTCGTTTTTAGGGCCAAAAATgtgagtgggggataaaggattggtgaaataccattattaagggctggaga Alignment from Exonerate_protein2genome CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCT-GTATTCAGGGCCAAAAAT tctaatggataagttggtaaagcaaggatgacaagtttattttctcctagCTCTTAGAACTCAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCGAGATCCCACACATACACATGTTGTTGTCACATGTGGGAAGGAAAATGCTCTGAAAGTATGGGACTTACAGGGGTCTGAGGAGCCTCGTTTTTAGGGCCAAAAATgtgagtgggggataaaggattggtgaaataccattattaagggctggaga Alignment from Exonerate_coding2genome CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCT-GTATTCAGGGCCAAAAAT tctaatggataagttggtaaagcaaggatgacaagtttattttctcctagCTCTTAGAACTCAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCGAGATCCCACACATACACATGTTGTTGTCACATGTGGGAAGGAAAATGCTCTGAAAGTATGGGACTTACAGGGGTCTGAGGAGCCTCGTTTTTAGGGCCAAAAATgtgagtgggggataaaggattggtgaaataccattattaagggctggaga Alignment from GeneWise CTCTTGGAACTGAAGGTGGGTCCTGGGGTGTGTAGGATGCGCCAAGATCCCACACATACACATGTGGTTGCCACATGTGGGAAAGAAAATGCTTTGAAAGTATGGGACCTACAGGGGTCTGAGGAGCCT-GTATTCAGGGCCAAAAAT tctaatggataagttggtaaagcaaggatgacaagtttattttctcctagCTCTTAGAACTCAAAGTGGGTCCTGGGGTGGGTAGAATGCGCCGAGATCCCACACATACACATGTTGTTGTCACATGTGGGAAGGAAAATGCTCTGAAAGTATGGGACTTACAGGGGTCTGAGGAGCCTCGTTTTTAGGGCCAAAAATgtgagtgggggataaaggattggtgaaataccattattaagggctggaga #### Wdr74_ID2318_8 --> 1 - 1 Original Alignment tTCCGTCATCGTAGGGAACACTCATGGGCAG-CTGGCAGAAATTGATTTTCGGCAAg aaatgggatctaggaatcgcactgatccttatgaaagctttcttttacagtTCTGTCATTGTAGGGAACACTCATGGGCAACCTGGCAGAAATTGACTTTCGGCAAggtaagaataccatagatttcttgagaaggaaagtaaacgaggggtcacta Alignment from CESAR tTCCGTCATCGTAGGGAACACTCATGGGCAG-CTGGCAGAAATTGATTTTCGGCAAg aaatgggatctaggaatcgcactgatccttatgaaagctttcttttacagtTCTGTCATTGTAGGGAACACTCATGGGCAACCTGGCAGAAATTGACTTTCGGCAAggtaagaataccatagatttcttgagaaggaaagtaaacgaggggtcacta Alignment from Spaln_aa2Genome TTCCGTCATCGTAGGGAACACTCATGGGCAG-CTGGCAGAAATTGATTTTCGGCAAG aaatgggatctaggaatcgcactgatccttatgaaagctttcttttacagTTCTGTCATTGTAGGGAACACTCATGGGCAAcCTGGCAGAAATTGACTTTCGGCAAGgtaagaataccatagatttcttgagaaggaaagtaaacgaggggtcacta Alignment from Spaln_nt2Genome TTCCGTCATCGTAGGGAACACTCATGGGCAG-CTGGCAGAAATTGATTTTCGGCAAG aaatgggatctaggaatcgcactgatccttatgaaagctttcttttacagTTCTGTCATTGTAGGGAACACTCATGGGCAACCTGGCAGAAATTGACTTTCGGCAAGgtaagaataccatagatttcttgagaaggaaagtaaacgaggggtcacta Alignment from Pairagon TTCCGTCATCGTAGGGAACACTCATGGGCAG-CTGGCAGAAATTGATTTTCGGCAAG aaatgggatctaggaatcgcactgatccttatgaaagctttcttttacagTTCTGTCATTGTAGGGAACACTCATGGGCAACCTGGCAGAAATTGACTTTCGGCAAGgtaagaataccatagatttcttgagaaggaaagtaaacgaggggtcacta Alignment from Exonerate_protein2genome TTCCGTCATCGTAGGGAACACTCATGGGCAG-CTGGCAGAAATTGATTTTCGGCAAG aaatgggatctaggaatcgcactgatccttatgaaagctttcttttacagTTCTGTCATTGTAGGGAACACTCATGGGCAACCTGGCAGAAATTGACTTTCGGCAAGgtaagaataccatagatttcttgagaaggaaagtaaacgaggggtcacta Alignment from Exonerate_coding2genome TTCCGTCATCGTAGGGAACACTCATGGGCAG-CTGGCAGAAATTGATTTTCGGCAAG aaatgggatctaggaatcgcactgatccttatgaaagctttcttttacagTTCTGTCATTGTAGGGAACACTCATGGGCAACCTGGCAGAAATTGACTTTCGGCAAGgtaagaataccatagatttcttgagaaggaaagtaaacgaggggtcacta Alignment from GeneWise TTCCGTCATCGTAGGGAACACTCATGGGCAG-CTGGCAGAAATTGATTTTCGGCAAG aaatgggatctaggaatcgcactgatccttatgaaagctttcttttacagTTCTGTCATTGTAGGGAACACTCATGGGCAACCTGGCAGAAATTGACTTTCGGCAAGgtaagaataccatagatttcttgagaaggaaagtaaacgaggggtcacta #### Wdr74_ID2320_10 --> 0 - 0 Original Alignment GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCA-GGCCGGGATAACTGGGAG gtgtctgggaaagggactatatacacttaatgaatgtccttttattttagGTTTATCTCAAGTGTCAGCTTAACTGCCTTCTCTTGTCACGGCCGGGATAACTGGGAGgtaggcgaataagtaataagtgtgagggatttagagacatacctgggctc Alignment from CESAR GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCA-GGCCGGGATAACTGGGAG gtgtctgggaaagggactatatacacttaatgaatgtccttttattttagGTTTATCTCAAGTGTCAGCTTAACTGCCTTCTCTTGTCACGGCCGGGATAACTGGGAGgtaggcgaataagtaataagtgtgagggatttagagacatacctgggctc Alignment from Spaln_aa2Genome GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCA-GGCCGGGATAACTGGGAG gtgtctgggaaagggactatatacacttaatgaatgtccttttattttagGTTTATCTCAAGTGTCAGCTTAACTGCCTTCTCTTGTCAcGGCCGGGATAACTGGGAGgtaggcgaataagtaataagtgtgagggatttagagacatacctgggctc Alignment from Spaln_nt2Genome GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCA-GGCCGGGATAACTGGGAG gtgtctgggaaagggactatatacacttaatgaatgtccttttattttagGTTTATCTCAAGTGTCAGCTTAACTGCCTTCTCTTGTCACGGCCGGGATAACTGGGAGgtaggcgaataagtaataagtgtgagggatttagagacatacctgggctc Alignment from Pairagon GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCA-GGCCGGGATAACTGGGAG gtgtctgggaaagggactatatacacttaatgaatgtccttttattttagGTTTATCTCAAGTGTCAGCTTAACTGCCTTCTCTTGTCACGGCCGGGATAACTGGGAGgtaggcgaataagtaataagtgtgagggatttagagacatacctgggctc Alignment from Exonerate_protein2genome GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCA-GGCCGGGATAACTGGGAG gtgtctgggaaagggactatatacacttaatgaatgtccttttattttagGTTTATCTCAAGTGTCAGCTTAACTGCCTTCTCTTGTCACGGCCGGGATAACTGGGAGgtaggcgaataagtaataagtgtgagggatttagagacatacctgggctc Alignment from Exonerate_coding2genome GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTGTCA-GGCCGGGATAACTGGGAG gtgtctgggaaagggactatatacacttaatgaatgtccttttattttagGTTTATCTCAAGTGTCAGCTTAACTGCCTTCTCTTGTCACGGCCGGGATAACTGGGAGgtaggcgaataagtaataagtgtgagggatttagagacatacctgggctc Alignment from GeneWise GTTTATCTCAAGTCTCAACTGAACTGCCTTCTCCTG-TCAGGCCGGGATAACTGGGAG gtgtctgggaaagggactatatacacttaatgaatgtccttttattttagGTTTATCTCAAGTGTCAGCTTAACTGCCTTCTCTTGTCACGGCCGGGATAACTGGGAGgtaggcgaataagtaataagtgtgagggatttagagacatacctgggctc #### Wdr96_ID10334_37 --> 0 - 1 Original Alignment ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAA-GATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAg gtattatctcttcgaacattgttatgggtattttgttccctttcccgtagAATCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAGGAAGCTGGGCAAATACAGCAATCAGAAGCGCTGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAggtaaatccatttttctgctagagtagatggattccaacagtcccagcaac Alignment from CESAR ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAA-GATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAg gtattatctcttcgaacattgttatgggtattttgttccctttcccgtagAATCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAGGAAGCTGGGCAAATACAGCAATCAGAAGCGCTGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAggtaaatccatttttctgctagagtagatggattccaacagtcccagcaac Alignment from Spaln_aa2Genome ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAA-GATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG gtattatctcttcgaacattgttatgggtattttgttccctttcccgtagAATCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAGGAAGCTGGGCAAATACAGCAATCAGAAGcGCTGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAGgtaaatccatttttctgctagagtagatggattccaacagtcccagcaac Alignment from Spaln_nt2Genome ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAA-GATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG gtattatctcttcgaacattgttatgggtattttgttccctttcccgtagAATCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAGGAAGCTGGGCAAATACAGCAATCAGAAGCGCTGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAGgtaaatccatttttctgctagagtagatggattccaacagtcccagcaac Alignment from Pairagon ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAA-GATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG gtattatctcttcgaacattgttatgggtattttgttccctttcccgtagAATCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAGGAAGCTGGGCAAATACAGCAATCAGAAGCGCTGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAGgtaaatccatttttctgctagagtagatggattccaacagtcccagcaac Alignment from Exonerate_protein2genome ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAA-GATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG gtattatctcttcgaacattgttatgggtattttgttccctttcccgtagAATCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAGGAAGCTGGGCAAATACAGCAATCAGAAGCGCTGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAGgtaaatccatttttctgctagagtagatggattccaacagtcccagcaac Alignment from Exonerate_coding2genome ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAA-GATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG gtattatctcttcgaacattgttatgggtattttgttccctttcccgtagAATCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAGGAAGCTGGGCAAATACAGCAATCAGAAGCGCTGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAGgtaaatccatttttctgctagagtagatggattccaacagtcccagcaac Alignment from GeneWise ACTCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAAGAAACTGGGAAAATACAGCAATCAGAAA-GATGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAACTGGTGGCCGTCTCAGAGAGACAAGACATTTGCAATGAGATAG gtattatctcttcgaacattgttatgggtattttgttccctttcccgtagAATCATAAGAAGAATGTAGAAAACTGCAAAAAGCTACTCAGGAAGCTGGGCAAATACAGCAATCAGAAGCGCTGTTGCAAATTACACCCTAAGCTGTAATCTACGGGAAGAGCTTGTGGCTGTTTCAGAGAGACCAGACATTTGTAATGAAATAGgtaaatccatttttctgctagagtagatggattccaacagtcccagcaac #### Wnt8b_ID9022_5 --> 2 - 0 Original Alignment ggGGCCAAGGTTGGCTCTGG-GGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG agagtcagcacactttgaacccaggacttatttttgatcattcctattagggGGGCAAGGCTGGCTCTGGCGGTGGATGCAGTGACAATGTTGGCTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATGTCCTCAAGACAGGGCAAGATGCCCGAGCAGCCATCAACTTGCACAACAATGAGGCAGGTCGCAAAgtaaatcctgcagtggtcaatgggagtgtcatcattcctgtcatagagaa Alignment from CESAR ggGGCCAAGGTTGGCTCTGG-GGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG agagtcagcacactttgaacccaggacttatttttgatcattcctattagggGGGCAAGGCTGGCTCTGGCGGTGGATGCAGTGACAATGTTGGCTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATGTCCTCAAGACAGGGCAAGATGCCCGAGCAGCCATCAACTTGCACAACAATGAGGCAGGTCGCAAAgtaaatcctgcagtggtcaatgggagtgtcatcattcctgtcatagagaa Alignment from Spaln_aa2Genome GGGGCCAAGGTTGGCTCTGG-GGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG agagtcagcacactttgaacccaggacttatttttgatcattcctattagGGGGGCAAGGCTGGCTCTGGcGGTGGATGCAGTGACAATGTTGGCTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATGTCCTCAAGACAGGGCAAGATGCCCGAGCAGCCATCAACTTGCACAACAATGAGGCAGGTCGCAAAgtaaatcctgcagtggtcaatgggagtgtcatcattcctgtcatagagaa Alignment from Spaln_nt2Genome GGGGCCAAGGTTGGCTCTGG-GGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG agagtcagcacactttgaacccaggacttatttttgatcattcctattagGGGGGCAAGGCTGGCTCTGGCGGTGGATGCAGTGACAATGTTGGCTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATGTCCTCAAGACAGGGCAAGATGCCCGAGCAGCCATCAACTTGCACAACAATGAGGCAGGTCGCAAAgtaaatcctgcagtggtcaatgggagtgtcatcattcctgtcatagagaa Alignment from Pairagon GGGGCCAAGGTTGGCTCTGG-GGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG agagtcagcacactttgaacccaggacttatttttgatcattcctattagGGGGGCAAGGCTGGCTCTGGCGGTGGATGCAGTGACAATGTTGGCTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATGTCCTCAAGACAGGGCAAGATGCCCGAGCAGCCATCAACTTGCACAACAATGAGGCAGGTCGCAAAgtaaatcctgcagtggtcaatgggagtgtcatcattcctgtcatagagaa Alignment from Exonerate_protein2genome GGGGCCAAGGTTGGCTCTGG-GGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG agagtcagcacactttgaacccaggacttatttttgatcattcctattagGGGGGCAAGGCTGGCTCTGGCGGTGGATGCAGTGACAATGTTGGCTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATGTCCTCAAGACAGGGCAAGATGCCCGAGCAGCCATCAACTTGCACAACAATGAGGCAGGTCGCAAAgtaaatcctgcagtggtcaatgggagtgtcatcattcctgtcatagagaa Alignment from Exonerate_coding2genome GGGGCCAAGGTTGGCTCTGG-GGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG agagtcagcacactttgaacccaggacttatttttgatcattcctattagGGGGGCAAGGCTGGCTCTGGCGGTGGATGCAGTGACAATGTTGGCTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATGTCCTCAAGACAGGGCAAGATGCCCGAGCAGCCATCAACTTGCACAACAATGAGGCAGGTCGCAAAgtaaatcctgcagtggtcaatgggagtgtcatcattcctgtcatagagaa Alignment from GeneWise GGGGCCAAGGTTGGCTCTGG-GGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG agagtcagcacactttgaacccaggacttatttttgatcattcctattagGGGGGCAAGGCTGGCTCTGGCGGTGGATGCAGTGACAATGTTGGCTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATGTCCTCAAGACAGGGCAAGATGCCCGAGCAGCCATCAACTTGCACAACAATGAGGCAGGTCGCAAAgtaaatcctgcagtggtcaatgggagtgtcatcattcctgtcatagagaa #### Yif1a_ID833_5 --> 2 - 2 Original Alignment ccATGGCCTTCATCACA-TACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAag tggagggatgcacaggatatttcctttcgttttcttccctggcttcacagccATGGCCTTTATCACACGATGTGCTGCGGGCTGGGATGGCATTAGGCATTCAGCAAaggtgcagatccagcaaatgttacttgttactcttctcctgcctggtctagt Alignment from CESAR ccATGGCCTTCATCACA-TACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAag tggagggatgcacaggatatttcctttcgttttcttccctggcttcacagccATGGCCTTTATCACACGATGTGCTGCGGGCTGGGATGGCATTAGGCATTCAGCAAaggtgcagatccagcaaatgttacttgttactcttctcctgcctggtctagt Alignment from Spaln_aa2Genome CCATGGCCTTCATCACA-TACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAAG tggagggatgcacaggatatttcctttcgttttcttccctggcttcacagCCATGGCCTTTATCACAcGATGTGCTGCGGGCTGGGATGGCATTAGGCATTCAGCAAAGgtgcagatccagcaaatgttacttgttactcttctcctgcctggtctagt Alignment from Spaln_nt2Genome CCATGGCCTTCATCACAT-ACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAAG tggagggatgcacaggatatttcctttcgttttcttccctggcttcacagCCATGGCCTTTATCACACGATGTGCTGCGGGCTGGGATGGCATTAGGCATTCAGCAAAGgtgcagatccagcaaatgttacttgttactcttctcctgcctggtctagt Alignment from Pairagon CCATGGCCTTCATCACAT-ACGTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAAG tggagggatgcacaggatatttcctttcgttttcttccctggcttcacagCCATGGCCTTTATCACACGATGTGCTGCGGGCTGGGATGGCATTAGGCATTCAGCAAAGgtgcagatccagcaaatgttacttgttactcttctcctgcctggtctagt Alignment from Exonerate_protein2genome CCATGGCCTTCATCACATAC-GTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAAG tggagggatgcacaggatatttcctttcgttttcttccctggcttcacagCCATGGCCTTTATCACACGATGTGCTGCGGGCTGGGATGGCATTAGGCATTCAGCAAAGgtgcagatccagcaaatgttacttgttactcttctcctgcctggtctagt Alignment from Exonerate_coding2genome CCATGGCCTTCATCACATAC-GTGCTGCTGGCTGGAATGGCGCTAGGCATTCAGCAAAG tggagggatgcacaggatatttcctttcgttttcttccctggcttcacagCCATGGCCTTTATCACACGATGTGCTGCGGGCTGGGATGGCATTAGGCATTCAGCAAAGgtgcagatccagcaaatgttacttgttactcttctcctgcctggtctagt Alignment from GeneWise tggagggatgcacaggatatttcctttcgttttcttccctggcttcacagccatggcctttatcacacgatgtgctgcgggctgggatggcattaggcattcagcaaaggtgcagatccagcaaatgttacttgttactcttctcctgcctggtctagt #### Yif1a_ID834_6 --> 1 - 2 Original Alignment gTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGG-GTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGgg gtctaagctgacccaccttgggcacctacttgctcattccttctctgtaggTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGCGTGTTCATGGAGGTGCTAGCTCTACTTTTAGGGCTTTACTTGGCCACTGTACGCAGCGAACTCAGTACCTTCCACCTCTTGGCTTACAGCAGCTACAAACATGTGgggtaagtatccaaaggtcaagaggagtctagaaggtcctaggctagggtgt Alignment from CESAR gTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGG-GTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGgg gtctaagctgacccaccttgggcacctacttgctcattccttctctgtaggTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGCGTGTTCATGGAGGTGCTAGCTCTACTTTTAGGGCTTTACTTGGCCACTGTACGCAGCGAACTCAGTACCTTCCACCTCTTGGCTTACAGCAGCTACAAACATGTGgggtaagtatccaaaggtcaagaggagtctagaaggtcctaggctagggtgt Alignment from Spaln_aa2Genome GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGG-GTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctaagctgacccaccttgggcacctacttgctcattccttctctgtagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGcGTGTTCATGGAGGTGCTAGCTCTACTTTTAGGGCTTTACTTGGCCACTGTACGCAGCGAACTCAGTACCTTCCACCTCTTGGCTTACAGCAGCTACAAACATGTGGGgtaagtatccaaaggtcaagaggagtctagaaggtcctaggctagggtgt Alignment from Spaln_nt2Genome GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGG-GTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctaagctgacccaccttgggcacctacttgctcattccttctctgtagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGCGTGTTCATGGAGGTGCTAGCTCTACTTTTAGGGCTTTACTTGGCCACTGTACGCAGCGAACTCAGTACCTTCCACCTCTTGGCTTACAGCAGCTACAAACATGTGGGgtaagtatccaaaggtcaagaggagtctagaaggtcctaggctagggtgt Alignment from Pairagon GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGG-GTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctaagctgacccaccttgggcacctacttgctcattccttctctgtagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGCGTGTTCATGGAGGTGCTAGCTCTACTTTTAGGGCTTTACTTGGCCACTGTACGCAGCGAACTCAGTACCTTCCACCTCTTGGCTTACAGCAGCTACAAACATGTGGGgtaagtatccaaaggtcaagaggagtctagaaggtcctaggctagggtgt Alignment from Exonerate_protein2genome GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGG-GTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctaagctgacccaccttgggcacctacttgctcattccttctctgtagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGCGTGTTCATGGAGGTGCTAGCTCTACTTTTAGGGCTTTACTTGGCCACTGTACGCAGCGAACTCAGTACCTTCCACCTCTTGGCTTACAGCAGCTACAAACATGTGGGgtaagtatccaaaggtcaagaggagtctagaaggtcctaggctagggtgt Alignment from Exonerate_coding2genome GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGG-GTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctaagctgacccaccttgggcacctacttgctcattccttctctgtagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGCGTGTTCATGGAGGTGCTAGCTCTACTTTTAGGGCTTTACTTGGCCACTGTACGCAGCGAACTCAGTACCTTCCACCTCTTGGCTTACAGCAGCTACAAACATGTGGGgtaagtatccaaaggtcaagaggagtctagaaggtcctaggctagggtgt Alignment from GeneWise GTTCTCCCCAGAGGTGTTGGGCCTGTGTGCAAGCACAGCACTGGTGTGG-GTGTTCATGGAGGTGTTGGCTCTGCTTCTGGGCCTCTACCTGGCCACCGTACGCAGTGAACTGAGTACCTTCCACCTCTTGGCTTACAGCGGTTACAAATATGTGGG gtctaagctgacccaccttgggcacctacttgctcattccttctctgtagGTTTTCCCCAGAGGTGTTGGGCCTGTGTGCACGCACAGCACTGGTATGGCGTGTTCATGGAGGTGCTAGCTCTACTTTTAGGGCTTTACTTGGCCACTGTACGCAGCGAACTCAGTACCTTCCACCTCTTGGCTTACAGCAGCTACAAACATGTGGGgtaagtatccaaaggtcaagaggagtctagaaggtcctaggctagggtgt #### Yif1a_ID835_7 --> 1 - 0 Original Alignment gATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCG-CTTATGTACTTCATT tttgctcactgcattcctaattcactcatgtgatctggcgtttcttccaggATGATCTTGAGTGTGCTTACAGCACTGCTCTTTGGCAGTGACAGCTATTATGTGGTCTTGGCCTGGGCATCATCTCCACCTTATGTACTTCATTgtaacggtggggtggccctggcccccctcctctgagtaatatgttgccca Alignment from CESAR gATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCG-CTTATGTACTTCATT tttgctcactgcattcctaattcactcatgtgatctggcgtttcttccaggATGATCTTGAGTGTGCTTACAGCACTGCTCTTTGGCAGTGACAGCTATTATGTGGTCTTGGCCTGGGCATCATCTCCACCTTATGTACTTCATTgtaacggtggggtggccctggcccccctcctctgagtaatatgtgtcgtt Alignment from Spaln_aa2Genome GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCG-CTTATGTACTTCATT tttgctcactgcattcctaattcactcatgtgatctggcgtttcttccagGATGATCTTGAGTGTGCTTACAGCACTGCTCTTTGGCAGTGACAGCTATTATGTGGTCTTGGCCTGGGCATCATCTCCAcCTTATGTACTTCATTgtaacggtggggtggccctggcccccctcctctgagtaatatgttgccca Alignment from Spaln_nt2Genome GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCG-CTTATGTACTTCATT tttgctcactgcattcctaattcactcatgtgatctggcgtttcttccagGATGATCTTGAGTGTGCTTACAGCACTGCTCTTTGGCAGTGACAGCTATTATGTGGTCTTGGCCTGGGCATCATCTCCACCTTATGTACTTCATTgtaacggtggggtggccctggcccccctcctctgagtaatatgttgccca Alignment from Pairagon GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCG-CTTATGTACTTCATT tttgctcactgcattcctaattcactcatgtgatctggcgtttcttccagGATGATCTTGAGTGTGCTTACAGCACTGCTCTTTGGCAGTGACAGCTATTATGTGGTCTTGGCCTGGGCATCATCTCCACCTTATGTACTTCATTgtaacggtggggtggccctggcccccctcctctgagtaatatgttgccca Alignment from Exonerate_protein2genome GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCG-CTTATGTACTTCATT tttgctcactgcattcctaattcactcatgtgatctggcgtttcttccagGATGATCTTGAGTGTGCTTACAGCACTGCTCTTTGGCAGTGACAGCTATTATGTGGTCTTGGCCTGGGCATCATCTCCACCTTATGTACTTCATTgtaacggtggggtggccctggcccccctcctctgagtaatatgttgccca Alignment from Exonerate_coding2genome GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCG-CTTATGTACTTCATT tttgctcactgcattcctaattcactcatgtgatctggcgtttcttccagGATGATCTTGAGTGTGCTTACAGCACTGCTCTTTGGCAGTGACAGCTATTATGTGGTCTTGGCCTGGGCATCATCTCCACCTTATGTACTTCATTgtaacggtggggtggccctggcccccctcctctgagtaatatgttgccca Alignment from GeneWise GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCT-GCGCTTATGTACTTCATT tttgctcactgcattcctaattcactcatgtgatctggcgtttcttccagGATGATCTTGAGTGTGCTTACAGCACTGCTCTTTGGCAGTGACAGCTATTATGTGGTCTTGGCCTGGGCATCATCTCCACCTTATGTACTTCATTgtaacggtggggtggccctggcccccctcctctgagtaatatgttgccca #### Zdhhc16_ID8350_7 --> 1 - 0 Original Alignment tTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGG-TTACAGGCCAAGGGCAGG tgaatcacagccccaagacttccaggttctggttttgttcttcattccagtTCTGTGGCCCTGGCTCTGGGTGCCCTTACCATGTGGCATGCTGTCCTGATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGCTTACAGGCCAAGGGCAGGgtgagtgttggagggactgcatgattgcgtggagaaatggtcacaggtat Alignment from CESAR tTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGG-TTACAGGCCAAGGGCAGG tgaatcacagccccaagacttccaggttctggttttgttcttcattccagtTCTGTGGCCCTGGCTCTGGGTGCCCTTACCATGTGGCATGCTGTCCTGATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGCTTACAGGCCAAGGGCAGGgtgagtgttggagggactgcatgattgcgtggagaaatggtcacaggtat Alignment from Spaln_aa2Genome TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGG-TTACAGGCCAAGGGCAGG tgaatcacagccccaagacttccaggttctggttttgttcttcattccagTTCTGTGGCCCTGGCTCTGGGTGCCCTTACCATGTGGCATGCTGTCCTGATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGcTTACAGGCCAAGGGCAGGgtgagtgttggagggactgcatgattgcgtggagaaatggtcacaggtat Alignment from Spaln_nt2Genome TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGG-TTACAGGCCAAGGGCAGG tgaatcacagccccaagacttccaggttctggttttgttcttcattccagTTCTGTGGCCCTGGCTCTGGGTGCCCTTACCATGTGGCATGCTGTCCTGATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGCTTACAGGCCAAGGGCAGGgtgagtgttggagggactgcatgattgcgtggagaaatggtcacaggtat Alignment from Pairagon TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGG-TTACAGGCCAAGGGCAGG tgaatcacagccccaagacttccaggttctggttttgttcttcattccagTTCTGTGGCCCTGGCTCTGGGTGCCCTTACCATGTGGCATGCTGTCCTGATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGCTTACAGGCCAAGGGCAGGgtgagtgttggagggactgcatgattgcgtggagaaatggtcacaggtat Alignment from Exonerate_protein2genome TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGG-TTACAGGCCAAGGGCAGG tgaatcacagccccaagacttccaggttctggttttgttcttcattccagTTCTGTGGCCCTGGCTCTGGGTGCCCTTACCATGTGGCATGCTGTCCTGATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGCTTACAGGCCAAGGGCAGGgtgagtgttggagggactgcatgattgcgtggagaaatggtcacaggtat Alignment from Exonerate_coding2genome TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGG-TTACAGGCCAAGGGCAGG tgaatcacagccccaagacttccaggttctggttttgttcttcattccagTTCTGTGGCCCTGGCTCTGGGTGCCCTTACCATGTGGCATGCTGTCCTGATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGCTTACAGGCCAAGGGCAGGgtgagtgttggagggactgcatgattgcgtggagaaatggtcacaggtat Alignment from GeneWise TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG- tgaatcacagccccaagacttccaggttctggttttgttcttcattccagTTCTGTGGCCCTGGCTCTGGGTGCCCTTACCATGTGGCATGCTGTCCTGATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGCTTACAGGCCAAGGGCAGGgtgagtgttggagggactgcatgattgcgtggagaaatggtcacaggtat #### Zdhhc6_ID11621_8 --> 0 - 2 Original Alignment GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGA-GGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGcg acaacttagacatgggtacatcttagctttactctttctctttcttgcagGTTCACTATAAGTTCATAGATGATTACAATGGTGCCAGCTGCCCATTGAATAGACGGAGTGAGAACCTTCTTTACAAGCCCCTGTACTGAGGAGCCTCGGATTCGGCTGCAAAAAGGTGAGTTCATCCTAGCAATGAGAGGGCTGcggtaagtagaggggggtgtccttcatggaaaaactggcattgtaacagggc Alignment from CESAR GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGA-GGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGcg acaacttagacatgggtacatcttagctttactctttctctttcttgcagGTTCACTATAAGTTCATAGATGATTACAATGGTGCCAGCTGCCCATTGAATAGACGGAGTGAGAACCTTCTTTACAAGCCCCTGTACTGAGGAGCCTCGGATTCGGCTGCAAAAAGGTGAGTTCATCCTAGCAATGAGAGGGCTGcggtaagtagaggggggtgtccttcatggaaaaactggcattgtaactctgc Alignment from Spaln_aa2Genome GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGA-GGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaacttagacatgggtacatcttagctttactctttctctttcttgcagGTTCACTATAAGTTCATAGATGATTACAATGGTGCCAGCTGCCCATTGAATAGAcGGAGTGAGAACCTTCTTTACAAGCCCCTGTACTGAGGAGCCTCGGATTCGGCTGCAAAAAGGTGAGTTCATCCTAGCAATGAGAGGGCTGCGgtaagtagaggggggtgtccttcatggaaaaactggcattgtaacagggc Alignment from Spaln_nt2Genome GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGA-GGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaacttagacatgggtacatcttagctttactctttctctttcttgcagGTTCACTATAAGTTCATAGATGATTACAATGGTGCCAGCTGCCCATTGAATAGACGGAGTGAGAACCTTCTTTACAAGCCCCTGTACTGAGGAGCCTCGGATTCGGCTGCAAAAAGGTGAGTTCATCCTAGCAATGAGAGGGCTGCGgtaagtagaggggggtgtccttcatggaaaaactggcattgtaacagggc Alignment from Pairagon GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGA-GGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaacttagacatgggtacatcttagctttactctttctctttcttgcagGTTCACTATAAGTTCATAGATGATTACAATGGTGCCAGCTGCCCATTGAATAGACGGAGTGAGAACCTTCTTTACAAGCCCCTGTACTGAGGAGCCTCGGATTCGGCTGCAAAAAGGTGAGTTCATCCTAGCAATGAGAGGGCTGCGgtaagtagaggggggtgtccttcatggaaaaactggcattgtaacagggc Alignment from Exonerate_protein2genome GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGA-GGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaacttagacatgggtacatcttagctttactctttctctttcttgcagGTTCACTATAAGTTCATAGATGATTACAATGGTGCCAGCTGCCCATTGAATAGACGGAGTGAGAACCTTCTTTACAAGCCCCTGTACTGAGGAGCCTCGGATTCGGCTGCAAAAAGGTGAGTTCATCCTAGCAATGAGAGGGCTGCGgtaagtagaggggggtgtccttcatggaaaaactggcattgtaacagggc Alignment from Exonerate_coding2genome GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGA-GGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaacttagacatgggtacatcttagctttactctttctctttcttgcagGTTCACTATAAGTTCATAGATGATTACAATGGTGCCAGCTGCCCATTGAATAGACGGAGTGAGAACCTTCTTTACAAGCCCCTGTACTGAGGAGCCTCGGATTCGGCTGCAAAAAGGTGAGTTCATCCTAGCAATGAGAGGGCTGCGgtaagtagaggggggtgtccttcatggaaaaactggcattgtaacagggc Alignment from GeneWise GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAAT-AGAGGAGTGAGAACCTTCTTTACGAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaacttagacatgggtacatcttagctttactctttctctttcttgcagGTTCACTATAAGTTCATAGATGATTACAATGGTGCCAGCTGCCCATTGAATAGACGGAGTGAGAACCTTCTTTACAAGCCCCTGTACTGAGGAGCCTCGGATTCGGCTGCAAAAAGGTGAGTTCATCCTAGCAATGAGAGGGCTGCGgtaagtagaggggggtgtccttcatggaaaaactggcattgtaacagggc #### Zfand5_ID4879_2 --> 2 - 2 Original Alignment ggACAGCTAGTGGTTCCAACAGTCCTACCTCAGAT-TCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAag ttttctgtaagcaagaaacaaataagcatctgaacattctccatctccagggACAGCTAGTGGTTCTAACAGTCCCACCTCGGATCGCAGCATCAGTACAGAAACCAGATGCTGGTTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCGaggtgagtaggaatatttcttggattttctagactaagctatcttcactatg Alignment from CESAR ggACAGCTAGTGGTTCCAACAGTCCTACCTCAGAT-TCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAag ttttctgtaagcaagaaacaaataagcatctgaacattctccatctccagggACAGCTAGTGGTTCTAACAGTCCCACCTCGGATCGCAGCATCAGTACAGAAACCAGATGCTGGTTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCGaggtgagtaggaatatttcttggattttctagactaagctatcttcactatg Alignment from Spaln_aa2Genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGAT-TCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctgtaagcaagaaacaaataagcatctgaacattctccatctccagGGACAGCTAGTGGTTCTAACAGTCCCACCTCGGATcGCAGCATCAGTACAGAAACCAGATGCTGGTTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCGAGgtgagtaggaatatttcttggattttctagactaagctatcttcactatg Alignment from Spaln_nt2Genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATT-CTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctgtaagcaagaaacaaataagcatctgaacattctccatctccagGGACAGCTAGTGGTTCTAACAGTCCCACCTCGGATCGCAGCATCAGTACAGAAACCAGATGCTGGTTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCGAGgtgagtaggaatatttcttggattttctagactaagctatcttcactatg Alignment from Pairagon GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATT-CTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctgtaagcaagaaacaaataagcatctgaacattctccatctccagGGACAGCTAGTGGTTCTAACAGTCCCACCTCGGATCGCAGCATCAGTACAGAAACCAGATGCTGGTTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCGAGgtgagtaggaatatttcttggattttctagactaagctatcttcactatg Alignment from Exonerate_protein2genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGAT-TCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctgtaagcaagaaacaaataagcatctgaacattctccatctccagGGACAGCTAGTGGTTCTAACAGTCCCACCTCGGATCGCAGCATCAGTACAGAAACCAGATGCTGGTTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCGAGgtgagtaggaatatttcttggattttctagactaagctatcttcactatg Alignment from Exonerate_coding2genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGAT-TCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctgtaagcaagaaacaaataagcatctgaacattctccatctccagGGACAGCTAGTGGTTCTAACAGTCCCACCTCGGATCGCAGCATCAGTACAGAAACCAGATGCTGGTTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCGAGgtgagtaggaatatttcttggattttctagactaagctatcttcactatg Alignment from GeneWise GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGAT-TCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctgtaagcaagaaacaaataagcatctgaacattctccatctccagGGACAGCTAGTGGTTCTAACAGTCCCACCTCGGATCGCAGCATCAGTACAGAAACCAGATGCTGGTTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCGAGgtgagtaggaatatttcttggattttctagactaagctatcttcactatg #### Zp1_ID3064_8 --> 2 - 2 Original Alignment atAAGACTTTCAGCTCCTACTAT-CAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATgg gcagcttaaagtacagcctggcctatgtgcactgagaccctttctcccagatAAGACTTTCAGCTCCTTCTATCCAGGGAAGTGACTACCCCCTTGTAAGACTGCTTCAGAAACCAGTCTATGTGCAGGTGCGGCTCCTGCAGAAAACT---GCCAGCCTGGTTCTGGTGTTACACCAGTGCTGGGCCACACCCACCACTAGC---TTTGATCAGCCCCAATGGCCTATTCTGTCAGATgcgtgagggatagaagaagaatgtcctgcattcagggtcaaaagcactttct Alignment from CESAR atAAGACTTTCAGCTCCTACTAT-CAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATgg gcagcttaaagtacagcctggcctatgtgcactgagaccctttctcccagatAAGACTTTCAGCTCCTTCTATCCAGGGAAGTGACTACCCCCTTGTAAGACTGCTTCAGAAACCAGTCTATGTGCAGGTGCGGCTCCTGCAGAAAACT---GCCAGCCTGGTTCTGGTGTTACACCAGTGCTGGGCCACACCCACCACTAGC---TTTGATCAGCCCCAATGGCCTATTCTGTCAGATgcgtgagggatagaagaagaatgtcctgcattcagggtcaaaagcactttct Alignment from Spaln_aa2Genome ATAAGACTTTCAGCTCCTACTAT-CAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttaaagtacagcctggcctatgtgcactgagaccctttctcccagATAAGACTTTCAGCTCCTTCTATcCAGGGAAGTGACTACCCCCTTGTAAGACTGCTTCAGAAACCAGTCTATGTGCAGGTGCGGCTCCTGCAGAAAACT---GCCAGCCTGGTTCTGGTGTTACACCAGTGCTGGGCCACACCCACCACTAGC---TTTGATCAGCCCCAATGGCCTATTCTGTCAGATGCgtgagggatagaagaagaatgtcctgcattcagggtcaaaagcactttct Alignment from Spaln_nt2Genome ATAAGACTTTCAGCTCCTACTATC-AGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttaaagtacagcctggcctatgtgcactgagaccctttctcccagATAAGACTTTCAGCTCCTTCTATCCAGGGAAGTGACTACCCCCTTGTAAGACTGCTTCAGAAACCAGTCTATGTGCAGGTGCGGCTCCTGCAGAAAACTG---CCAGCCTGGTTCTGGTGTTACACCAGTGCTGGGCCACACCCACCACTAG---CTTTGATCAGCCCCAATGGCCTATTCTGTCAGATGCgtgagggatagaagaagaatgtcctgcattcagggtcaaaagcactttct Alignment from Pairagon ATAAGACTTTCAGCTCCTACTAT-CAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttaaagtacagcctggcctatgtgcactgagaccctttctcccagATAAGACTTTCAGCTCCTTCTATCCAGGGAAGTGACTACCCCCTTGTAAGACTGCTTCAGAAACCAGTCTATGTGCAGGTGCGGCTCCTGCAGAAAACTG---CCAGCCTGGTTCTGGTGTTACACCAGTGCTGGGCCACACCCACCACTAG---CTTTGATCAGCCCCAATGGCCTATTCTGTCAGATGCgtgagggatagaagaagaatgtcctgcattcagggtcaaaagcactttct Alignment from Exonerate_protein2genome ATAAGACTTTCAGCTCCTACTAT-CAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttaaagtacagcctggcctatgtgcactgagaccctttctcccagATAAGACTTTCAGCTCCTTCTATCCAGGGAAGTGACTACCCCCTTGTAAGACTGCTTCAGAAACCAGTCTATGTGCAGGTGCGGCTCCTGCAGAAAACT---GCCAGCCTGGTTCTGGTGTTACACCAGTGCTGGGCCACACCCACCACTAGC---TTTGATCAGCCCCAATGGCCTATTCTGTCAGATGCgtgagggatagaagaagaatgtcctgcattcagggtcaaaagcactttct Alignment from Exonerate_coding2genome ATAAGACTTTCAGCTCCTACTAT-CAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttaaagtacagcctggcctatgtgcactgagaccctttctcccagATAAGACTTTCAGCTCCTTCTATCCAGGGAAGTGACTACCCCCTTGTAAGACTGCTTCAGAAACCAGTCTATGTGCAGGTGCGGCTCCTGCAGAAAACT---GCCAGCCTGGTTCTGGTGTTACACCAGTGCTGGGCCACACCCACCACTAGC---TTTGATCAGCCCCAATGGCCTATTCTGTCAGATGCgtgagggatagaagaagaatgtcctgcattcagggtcaaaagcactttct Alignment from GeneWise GACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttaaagtacagcctggcctatgtgcactgagaccctttctcccagataagACTTTCAGCTCCTTCTATCCAGGGAAGTGACTACCCCCTTGTAAGACTGCTTCAGAAACCAGTCTATGTGCAGGTGCGGCTCCTGCAGAAAACT---GCCAGCCTGGTTCTGGTGTTACACCAGTGCTGGGCCACACCCACCACTAGC---TTTGATCAGCCCCAATGGCCTATTCTGTCAGATGCgtgagggatagaagaagaatgtcctgcattcagggtcaaaagcactttct #### Zp1_ID3066_6 --> 0 - 2 Original Alignment GTGGTCGGCGAACAACTCATCTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAAAAG-GGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCcg gataggatactcccatcccttcctgggatgtgccttatgctttcttccagGTGGTTGGCAAACAACTCATTTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAAAAGCGGGCCACAAGGTTCTATCACACGTGACAGTGCCTTCcggtatggactaactagattgtaagcctgtgtgtagactggtttacgagact Alignment from CESAR GTGGTCGGCGAACAACTCATCTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAAAAG-GGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCcg gataggatactcccatcccttcctgggatgtgccttatgctttcttccagGTGGTTGGCAAACAACTCATTTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAAAAGCGGGCCACAAGGTTCTATCACACGTGACAGTGCCTTCcggtatggactaactagattgtaagcctgtgtgtagactggtttacgagact Alignment from Spaln_aa2Genome GTGGTCGGCGAACAACTCATCTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAAAAG-GGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCCG gataggatactcccatcccttcctgggatgtgccttatgctttcttccagGTGGTTGGCAAACAACTCATTTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAAAAGcGGGCCACAAGGTTCTATCACACGTGACAGTGCCTTCCGgtatggactaactagattgtaagcctgtgtgtagactggtttacgagact Alignment from Spaln_nt2Genome GTGGTCGGCGAACAACTCATCTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAAAAG-GGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCCG gataggatactcccatcccttcctgggatgtgccttatgctttcttccagGTGGTTGGCAAACAACTCATTTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAAAAGCGGGCCACAAGGTTCTATCACACGTGACAGTGCCTTCCGgtatggactaactagattgtaagcctgtgtgtagactggtttacgagact Alignment from Pairagon GTGGTCGGCGAACAACTCATCTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAAAAG-GGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCCG gataggatactcccatcccttcctgggatgtgccttatgctttcttccagGTGGTTGGCAAACAACTCATTTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAAAAGCGGGCCACAAGGTTCTATCACACGTGACAGTGCCTTCCGgtatggactaactagattgtaagcctgtgtgtagactggtttacgagact Alignment from Exonerate_protein2genome GTGGTCGGCGAACAACTCATCTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAAAAG-GGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCCG gataggatactcccatcccttcctgggatgtgccttatgctttcttccagGTGGTTGGCAAACAACTCATTTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAAAAGCGGGCCACAAGGTTCTATCACACGTGACAGTGCCTTCCGgtatggactaactagattgtaagcctgtgtgtagactggtttacgagact Alignment from Exonerate_coding2genome GTGGTCGGCGAACAACTCATCTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAAAAG-GGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCCG gataggatactcccatcccttcctgggatgtgccttatgctttcttccagGTGGTTGGCAAACAACTCATTTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAAAAGCGGGCCACAAGGTTCTATCACACGTGACAGTGCCTTCCGgtatggactaactagattgtaagcctgtgtgtagactggtttacgagact Alignment from GeneWise GTGGTCGGCGAACAACTCATCTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAA-AAGGGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCCG gataggatactcccatcccttcctgggatgtgccttatgctttcttccagGTGGTTGGCAAACAACTCATTTATGAGAACCAGCTGGTGTCTGACATTGATGTCCAAAAGCGGGCCACAAGGTTCTATCACACGTGACAGTGCCTTCCGgtatggactaactagattgtaagcctgtgtgtagactggtttacgagact #### Zp1_ID3069_3 --> 0 - 1 Original Alignment GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTG-ACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAg gactaagccagagcctcactcagctgcttttttttgttgtttatttttagGATGGACGATTTCACCTGAGAGTTTTCATACAAGCTGTCTTACCAAATAGCCATGTGGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGCACTCCAGACCCCTACCTTGCTCCACCCACCACGCCTGAGCCTTTTTCACCTCATGCTTTTGCCCTGCACCCTATCCCTGAG---------GCCGGGTCTGGCCAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAACATCCAACTCCTGCTCCACCATCACTAGGACTTGGACCTACTGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAGCTAACTGAGCTGGACTCTGTAggtagtggaacctcatctgtgtacagactaagtactatgacctgtgggctg Alignment from CESAR GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTG-ACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAg gactaagccagagcctcactcagctgcttttttttgttgtttatttttagGATGGACGATTTCACCTGAGAGTTTTCATACAAGCTGTCTTACCAAATAGCCATGTGGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGCACTCCAGACCCCTACCTTGCTCCACCCACCACGCCTGAGCCTTTTTCACCTCATGCTTTTGCCCTGCACCCTATCCCTGAG---------GCCGGGTCTGGCCAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAACATCCAACTCCTGCTCCACCATCACTAGGACTTGGACCTACTGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAGCTAACTGAGCTGGACTCTGTAggtagtggaacctcatctgtgtacagactaagtactatgacctgtgggctg Alignment from Spaln_aa2Genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTG-ACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG gactaagccagagcctcactcagctgcttttttttgttgtttatttttagGATGGACGATTTCACCTGAGAGTTTTCATACAAGCTGTCTTACCAAATAGCCATGTGGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGcACTCCAGACCCCTACCTTGCTCCACCCACCACGCCTGAGCCTTTTTCACCTCATGCTTTTGCCCTGCACCCTATCCCTGAG---------GCCGGGTCTGGCCAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAACATCCAACTCCTGCTCCACCATCACTAGGACTTGGACCTACTGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAGCTAACTGAGCTGGACTCTGTAGgtagtggaacctcatctgtgtacagactaagtactatgacctgtgggctg Alignment from Spaln_nt2Genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTG-ACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG gactaagccagagcctcactcagctgcttttttttgttgtttatttttagGATGGACGATTTCACCTGAGAGTTTTCATACAAGCTGTCTTACCAAATAGCCATGTGGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGCACTCCAGACCCCTACCTTGCTCCACCCACCACGCCTGAGCCTTTTTCACCTCATGCTTTTGCCCTGCACCCTATCCCTGA---------GGCCGGGTCTGGCCA------TATCACTATGTTGTACCCAGAACAAAGCTTCAAACATCCAACTCCTGCTCCACCATCACTAGGACTTGGACCTACTGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAGCTAACTGAGCTGGACTCTGTAGgtagtggaacctcatctgtgtacagactaagtactatgacctgtgggctg Alignment from Pairagon GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTG-ACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG gactaagccagagcctcactcagctgcttttttttgttgtttatttttagGATGGACGATTTCACCTGAGAGTTTTCATACAAGCTGTCTTACCAAATAGCCATGTGGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGCACTCCAGACCCCTACCTTGCTCCACCCACCACGCCTGAGCCTTTTTCACCTCATGCTTTTGCCCTGCACCCTATCCCTGA---------GGCCGGGTCTGGCCATA------TCACTATGTTGTACCCAGAACAAAGCTTCAAACATCCAACTCCTGCTCCACCATCACTAGGACTTGGACCTACTGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAGCTAACTGAGCTGGACTCTGTAGgtagtggaacctcatctgtgtacagactaagtactatgacctgtgggctg Alignment from Exonerate_protein2genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTG-ACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG gactaagccagagcctcactcagctgcttttttttgttgtttatttttagGATGGACGATTTCACCTGAGAGTTTTCATACAAGCTGTCTTACCAAATAGCCATGTGGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGCACTCCAGACCCCTACCTTGCTCCACCCACCACGCCTGAGCCTTTTTCACCTCATGCTTTTGCCCTGCACCCTATCCCTGAG---------GCCGGGTCTGGCCAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAACATCCAACTCCTGCTCCACCATCACTAGGACTTGGACCTACTGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAGCTAACTGAGCTGGACTCTGTAGgtagtggaacctcatctgtgtacagactaagtactatgacctgtgggctg Alignment from Exonerate_coding2genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTG-ACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG gactaagccagagcctcactcagctgcttttttttgttgtttatttttagGATGGACGATTTCACCTGAGAGTTTTCATACAAGCTGTCTTACCAAATAGCCATGTGGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGCACTCCAGACCCCTACCTTGCTCCACCCACCACGCCTGAGCCTTTTTCACCTCATGCTTTTGCCCTGCACCCTATCCCTGAG---------GCCGGGTCTGGCCAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAACATCCAACTCCTGCTCCACCATCACTAGGACTTGGACCTACTGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAGCTAACTGAGCTGGACTCTGTAGgtagtggaacctcatctgtgtacagactaagtactatgacctgtgggctg Alignment from GeneWise GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACC-GTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAGGT- gactaagccagagcctcactcagctgcttttttttgttgtttatttttagGATGGACGATTTCACCTGAGAGTTTTCATACAAGCTGTCTTACCAAATAGCCATGTGGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGCACTCCAGACCCCTACCTTGCTCCACCCACCACGCCTGAGCCTTTTTCACCTCATGCTTTTGCCCTGCACCCTATCCCTGAG---------GCCGGGTCTGGCCAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAACATCCAACTCCTGCTCCACCATCACTAGGACTTGGACCTACTGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAGCTAACTGAGCTGGACTCTGTAGGTAgtggaacctcatctgtgtacagactaagtactatgacctgtgggctg ####