#### 1700055N04Rik_ID225_3 --> 0 - 0 Original Alignment TCAGGCTTCGAGTCAGACATG-AGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ctgaaaaatagacctagcctaacttgtgtgttgacccttcaatgtttcagTCAGGCCTCAAATCAGACATGCAGTGAGATCATTTTGTGTGAGAACGAGGTGGACCTGGCCCTTATGAACCTGCTGACCTGGATGAAAGAGGAATCTTTGTCCACCAACTTGgtgagtcaacacaccagatacacaaacccacaagatacaggtagtgatgg Alignment from CESAR TCAGGCTTCGAGTCAGACATG-AGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ctgaaaaatagacctagcctaacttgtgtgttgacccttcaatgtttcagTCAGGCCTCAAATCAGACATGCAGTGAGATCATTTTGTGTGAGAACGAGGTGGACCTGGCCCTTATGAACCTGCTGACCTGGATGAAAGAGGAATCTTTGTCCACCAACTTGgtgagtcaacacaccagatacacaaacccacaagatacaggtagtgatgg Alignment from Spaln_aa2Genome TCAGGCTTCGAGTCAGACATG-AGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ctgaaaaatagacctagcctaacttgtgtgttgacccttcaatgtttcagTCAGGCCTCAAATCAGACATGcAGTGAGATCATTTTGTGTGAGAACGAGGTGGACCTGGCCCTTATGAACCTGCTGACCTGGATGAAAGAGGAATCTTTGTCCACCAACTTGgtgagtcaacacaccagatacacaaacccacaagatacaggtagtgatgg Alignment from Spaln_nt2Genome TCAGGCTTCGAGTCAGACATG-AGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ctgaaaaatagacctagcctaacttgtgtgttgacccttcaatgtttcagTCAGGCCTCAAATCAGACATGCAGTGAGATCATTTTGTGTGAGAACGAGGTGGACCTGGCCCTTATGAACCTGCTGACCTGGATGAAAGAGGAATCTTTGTCCACCAACTTGgtgagtcaacacaccagatacacaaacccacaagatacaggtagtgatgg Alignment from Pairagon TCAGGCTTCGAGTCAGACATG-AGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ctgaaaaatagacctagcctaacttgtgtgttgacccttcaatgtttcagTCAGGCCTCAAATCAGACATGCAGTGAGATCATTTTGTGTGAGAACGAGGTGGACCTGGCCCTTATGAACCTGCTGACCTGGATGAAAGAGGAATCTTTGTCCACCAACTTGgtgagtcaacacaccagatacacaaacccacaagatacaggtagtgatgg Alignment from Exonerate_protein2genome TCAGGCTTCGAGTCAGACATG-AGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ctgaaaaatagacctagcctaacttgtgtgttgacccttcaatgtttcagTCAGGCCTCAAATCAGACATGCAGTGAGATCATTTTGTGTGAGAACGAGGTGGACCTGGCCCTTATGAACCTGCTGACCTGGATGAAAGAGGAATCTTTGTCCACCAACTTGgtgagtcaacacaccagatacacaaacccacaagatacaggtagtgatgg Alignment from Exonerate_coding2genome TCAGGCTTCGAGTCAGACATG-AGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ctgaaaaatagacctagcctaacttgtgtgttgacccttcaatgtttcagTCAGGCCTCAAATCAGACATGCAGTGAGATCATTTTGTGTGAGAACGAGGTGGACCTGGCCCTTATGAACCTGCTGACCTGGATGAAAGAGGAATCTTTGTCCACCAACTTGgtgagtcaacacaccagatacacaaacccacaagatacaggtagtgatgg Alignment from GeneWise TCAGGCTTCGAGTCAGACATGAGTGAGATCATTCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTG ctgaaaaatagacctagcctaacttgtgtgttgacccttcaatgtttcagtcagGCCTCAAATCAGACA---TGCAGTGAGATCATTTTGTGTGAGAACGAGGTGGACCTGGCCCTTATGAACCTGCTGACCTGGATGAAAGAGGAATCTTTGTCCACCAACTTGgtgagtcaacacaccagatacacaaacccacaagatacaggtagtgatgg #### 1700055N04Rik_ID226_4 --> 0 - 1 Original Alignment CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAG-CCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg cactcttactcctgcaataccttgtgatacctcaactctggcacttccagCTCACCAAACTGAGCACGGCCTTCATCTGGAAGGAACCCCTTTGGTCTGGTGCTTATCATTGCACCATGGAACTATCCTGTTAACCTCATGATCATACCTTCGGTGGGAGCTATTGCTACAggtaagaggcattccaagttcacaagcctgatttatctctatcttcttaag Alignment from CESAR CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAG-CCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAg cactcttactcctgcaataccttgtgatacctcaactctggcacttccagCTCACCAAACTGAGCACGGCCTTCATCTGGAAGGAACCCCTTTGGTCTGGTGCTTATCATTGCACCATGGAACTATCCTGTTAACCTCATGATCATACCTTCGGTGGGAGCTATTGCTACAggtaagaggcattccaagttcacaagcctgatttatctctatcttcttaag Alignment from Spaln_aa2Genome CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAG-CCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG cactcttactcctgcaataccttgtgatacctcaactctggcacttccagCTCACCAAACTGAGCACGGCCTTCATCTGGAAGGAAcCCCTTTGGTCTGGTGCTTATCATTGCACCATGGAACTATCCTGTTAACCTCATGATCATACCTTCGGTGGGAGCTATTGCTACAGgtaagaggcattccaagttcacaagcctgatttatctctatcttcttaag Alignment from Spaln_nt2Genome CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAGCCC-TTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG cactcttactcctgcaataccttgtgatacctcaactctggcacttccagCTCACCAAACTGAGCACGGCCTTCATCTGGAAGGAACCCCTTTGGTCTGGTGCTTATCATTGCACCATGGAACTATCCTGTTAACCTCATGATCATACCTTCGGTGGGAGCTATTGCTACAGgtaagaggcattccaagttcacaagcctgatttatctctatcttcttaag Alignment from Pairagon CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAG-CCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG cactcttactcctgcaataccttgtgatacctcaactctggcacttccagCTCACCAAACTGAGCACGGCCTTCATCTGGAAGGAACCCCTTTGGTCTGGTGCTTATCATTGCACCATGGAACTATCCTGTTAACCTCATGATCATACCTTCGGTGGGAGCTATTGCTACAGgtaagaggcattccaagttcacaagcctgatttatctctatcttcttaag Alignment from Exonerate_protein2genome CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAG-CCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG cactcttactcctgcaataccttgtgatacctcaactctggcacttccagCTCACCAAACTGAGCACGGCCTTCATCTGGAAGGAACCCCTTTGGTCTGGTGCTTATCATTGCACCATGGAACTATCCTGTTAACCTCATGATCATACCTTCGGTGGGAGCTATTGCTACAGgtaagaggcattccaagttcacaagcctgatttatctctatcttcttaag Alignment from Exonerate_coding2genome CTCACCAAGCTGAGCACAGCTTTCATCCGGAAAGAG-CCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG cactcttactcctgcaataccttgtgatacctcaactctggcacttccagCTCACCAAACTGAGCACGGCCTTCATCTGGAAGGAACCCCTTTGGTCTGGTGCTTATCATTGCACCATGGAACTATCCTGTTAACCTCATGATCATACCTTCGGTGGGAGCTATTGCTACAGgtaagaggcattccaagttcacaagcctgatttatctctatcttcttaag Alignment from GeneWise CTCACCAAGCTGAGCACAGCTTTCATCCGGAAA-GAGCCCTTTGGCCTGGTGCTTATCATTGCACCCTGGAATTATCCTGTGAACTTGATGATCATACCTTTAGTGGGGGCCATTGCTGCAG cactcttactcctgcaataccttgtgatacctcaactctggcacttccagCTCACCAAACTGAGCACGGCCTTCATCTGGAAGGAACCCCTTTGGTCTGGTGCTTATCATTGCACCATGGAACTATCCTGTTAACCTCATGATCATACCTTCGGTGGGAGCTATTGCTACAGgtaagaggcattccaagttcacaagcctgatttatctctatcttcttaag #### 1700055N04Rik_ID227_5 --> 2 - 0 Original Alignment gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTG-CTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagcgctcaaacatcaatctagtgtcgcctctctctccacaggaAACTGTGTGGTGCTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCCTGGCAGAGCTTCCACCTCAGTATCTAGATCAAgtaaggctagattaggtgcttgatatgacaccttgtgagggtgaagcatt Alignment from CESAR gaAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTG-CTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagcgctcaaacatcaatctagtgtcgcctctctctccacaggaAACTGTGTGGTGCTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCCTGGCAGAGCTTCCACCTCAGTATCTAGATCAAgtaaggctagattaggtgcttgatatgacaccttgtgagggtgaagcatt Alignment from Spaln_aa2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTG-CTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagcgctcaaacatcaatctagtgtcgcctctctctccacagGAAACTGTGTGGTGCTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGcCTGGCAGAGCTTCCACCTCAGTATCTAGATCAAgtaaggctagattaggtgcttgatatgacaccttgtgagggtgaagcatt Alignment from Spaln_nt2Genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTG-CTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagcgctcaaacatcaatctagtgtcgcctctctctccacagGAAACTGTGTGGTGCTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCCTGGCAGAGCTTCCACCTCAGTATCTAGATCAAgtaaggctagattaggtgcttgatatgacaccttgtgagggtgaagcatt Alignment from Pairagon GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTG-CTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagcgctcaaacatcaatctagtgtcgcctctctctccacagGAAACTGTGTGGTGCTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCCTGGCAGAGCTTCCACCTCAGTATCTAGATCAAgtaaggctagattaggtgcttgatatgacaccttgtgagggtgaagcatt Alignment from Exonerate_protein2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTG-CTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagcgctcaaacatcaatctagtgtcgcctctctctccacagGAAACTGTGTGGTGCTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCCTGGCAGAGCTTCCACCTCAGTATCTAGATCAAgtaaggctagattaggtgcttgatatgacaccttgtgagggtgaagcatt Alignment from Exonerate_coding2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTG-CTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagcgctcaaacatcaatctagtgtcgcctctctctccacagGAAACTGTGTGGTGCTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCCTGGCAGAGCTTCCACCTCAGTATCTAGATCAAgtaaggctagattaggtgcttgatatgacaccttgtgagggtgaagcatt Alignment from GeneWise GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAG-GTGCTGGCAGAGCTGCTACCCCAGTATCTGGACCAG ggcttgaggagcgctcaaacatcaatctagtgtcgcctctctctccacagGAAACTGTGTGGTGCTAAAGCCATCAGAAATTAGCAGGAACACAGAGAAGGTGCCTGGCAGAGCTTCCACCTCAGTATCTAGATCAAgtaaggctagattaggtgcttgatatgacaccttgtgagggtgaagcatt #### 1700123I01Rik_ID1493_5 --> 2 - 0 Original Alignment ggAAACCAGCAGATGAT-ATTCCTCTTGAGTTG acaggtattcctgtcttgccccatcatcctgctcttacctgtctctccaggtAAACCTGCAGATGATCATTCCACTTGAGTTGgtaaaatttagtggcttcttttatgtctccatccagattaatcaagccac Alignment from CESAR ggAAACCAGCAGATGAT-ATTCCTCTTGAGTTG acaggtattcctgtcttgccccatcatcctgctcttacctgtctctccaggtAAACCTGCAGATGATCATTCCACTTGAGTTGgtaaaatttagtggcttcttttatgtctccatccagattaatcaagccac Alignment from Spaln_aa2Genome GGAAACCAGCAGATGAT-ATTCCTCTTGAGTTG acaggtattcctgtcttgccccatcatcctgctcttacctgtctctccagGTAAACCTGCAGATGATcATTCCACTTGAGTTGgtaaaatttagtggcttcttttatgtctccatccagattaatcaagccac Alignment from Spaln_nt2Genome GGAAACCAGCAGATGAT-ATTCCTCTTGAGTTG acaggtattcctgtcttgccccatcatcctgctcttacctgtctctccagGTAAACCTGCAGATGATCATTCCACTTGAGTTGgtaaaatttagtggcttcttttatgtctccatccagattaatcaagccac Alignment from Pairagon GGAAACCAGCAGATGAT-ATTCCTCTTGAGTTG acaggtattcctgtcttgccccatcatcctgctcttacctgtctctccagGTAAACCTGCAGATGATCATTCCACTTGAGTTGgtaaaatttagtggcttcttttatgtctccatccagattaatcaagccac Alignment from Exonerate_protein2genome GGAAACCAGCAGATGAT-ATTCCTCTTGAGTTG acaggtattcctgtcttgccccatcatcctgctcttacctgtctctccagGTAAACCTGCAGATGATCATTCCACTTGAGTTGgtaaaatttagtggcttcttttatgtctccatccagattaatcaagccac Alignment from Exonerate_coding2genome acaggtattcctgtcttgccccatcatcctgctcttacctgtctctccaggtaaacctgcagatgatcattccacttgagttggtaaaatttagtggcttcttttatgtctccatccagattaatcaagccac Alignment from GeneWise acaggtattcctgtcttgccccatcatcctgctcttacctgtctctccaggtaaacctgcagatgatcattccacttgagttggtaaaatttagtggcttcttttatgtctccatccagattaatcaagccac #### 1810009A15Rik_ID2453_2 --> 0 - 2 Original Alignment GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGC-CAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGgc aggtgggaagccttggcctggcatggatccacattactttttttttaaagGAGCTAAAAAAGAAGTTGTCTAAGCGCCACAGGGTATTAAGTAAGGATTGGCAGAGGAAACGCCCAGGTGGTTGGTGCTGTGATAGATGAAGGCTTGACTATGAAGCACCACCTCAAGAAGCGGgcgtaggtacagagccacttcttactagatatagtgaatctttagtttactg Alignment from CESAR GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGC-CAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGgc aggtgggaagccttggcctggcatggatccacattactttttttttaaagGAGCTAAAAAAGAAGTTGTCTAAGCGCCACAGGGTATTAAGTAAGGATTGGCAGAGGAAACGCCCAGGTGGTTGGTGCTGTGATAGATGAAGGCTTGACTATGAAGCACCACCTCAAGAAGCGGgcgtaggtacagagccacttcttactagatatagtgaatctttagtttactg Alignment from Spaln_aa2Genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGC-CAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC aggtgggaagccttggcctggcatggatccacattactttttttttaaagGAGCTAAAAAAGAAGTTGTCTAAGCGCCACAGGGTATTAAGTAAGGATTGGCAGAGGAAACGCcCAGGTGGTTGGTGCTGTGATAGATGAAGGCTTGACTATGAAGCACCACCTCAAGAAGCGGGCgtaggtacagagccacttcttactagatatagtgaatctttagtttactg Alignment from Spaln_nt2Genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGCC-AGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGCGTCC aggtgggaagccttggcctggcatggatccacattactttttttttaaagGAGCTAAAAAAGAAGTTGTCTAAGCGCCACAGGGTATTAAGTAAGGATTGGCAGAGGAAACGCCCAGGTGGTTGGTGCTGTGATAGATGAAGGCTTGACTATGAAGCACCACCTCAAGAAGCGGGCGTAGgtacagagccacttcttactagatatagtgaatctttagtttactg Alignment from Pairagon GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACG-CCAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC aggtgggaagccttggcctggcatggatccacattactttttttttaaagGAGCTAAAAAAGAAGTTGTCTAAGCGCCACAGGGTATTAAGTAAGGATTGGCAGAGGAAACGCCCAGGTGGTTGGTGCTGTGATAGATGAAGGCTTGACTATGAAGCACCACCTCAAGAAGCGGGCgtaggtacagagccacttcttactagatatagtgaatctttagtttactg Alignment from Exonerate_protein2genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGC-CAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC aggtgggaagccttggcctggcatggatccacattactttttttttaaagGAGCTAAAAAAGAAGTTGTCTAAGCGCCACAGGGTATTAAGTAAGGATTGGCAGAGGAAACGCCCAGGTGGTTGGTGCTGTGATAGATGAAGGCTTGACTATGAAGCACCACCTCAAGAAGCGGGCgtaggtacagagccacttcttactagatatagtgaatctttagtttactg Alignment from Exonerate_coding2genome GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGC-CAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC aggtgggaagccttggcctggcatggatccacattactttttttttaaagGAGCTAAAAAAGAAGTTGTCTAAGCGCCACAGGGTATTAAGTAAGGATTGGCAGAGGAAACGCCCAGGTGGTTGGTGCTGTGATAGATGAAGGCTTGACTATGAAGCACCACCTCAAGAAGCGGGCgtaggtacagagccacttcttactagatatagtgaatctttagtttactg Alignment from GeneWise GAGCTGAAGAAGAAGTTGTTCAAGCGCCGCAGGGTATTAAGCAGGGATCGGCGACGGAAACGC-CAGGTGGTCGGGGCTGTGATAGACGAAGGGCTGACTACGAAGCACCACCTCAAGAAGCGGGC aggtgggaagccttggcctggcatggatccacattactttttttttaaagGAGCTAAAAAAGAAGTTGTCTAAGCGCCACAGGGTATTAAGTAAGGATTGGCAGAGGAAACGCCCAGGTGGTTGGTGCTGTGATAGATGAAGGCTTGACTATGAAGCACCACCTCAAGAAGCGGGCgtaggtacagagccacttcttactagatatagtgaatctttagtttactg #### 2010012O05Rik_ID10003_2 --> 0 - 0 Original Alignment CTGCTGGGGCAGGCAGCTCGAAACATGGTA-CTACAGGAAGATGCCATCTTACACTCGGAAGAT accctatagaggtgggatgatcattgctaatgctgatgttttcgtcgtagCTGCTGGGGCAGGCAGCTCGAAACATGGTACCTACAGGAAGATGCTATTTTGCGTTCAGAAGATgtgagaagcaattatttcatcatatgtgtgtgtaaggatctttgggtctg Alignment from CESAR CTGCTGGGGCAGGCAGCTCGAAACATGGTA-CTACAGGAAGATGCCATCTTACACTCGGAAGAT accctatagaggtgggatgatcattgctaatgctgatgttttcgtcgtagCTGCTGGGGCAGGCAGCTCGAAACATGGTACCTACAGGAAGATGCTATTTTGCGTTCAGAAGATgtgagaagcaattatttcatcatatgtgtgtgtaaggatctttgggtctg Alignment from Spaln_aa2Genome CTGCTGGGGCAGGCAGCTCGAAACATGGTA-CTACAGGAAGATGCCATCTTACACTCGGAAGAT accctatagaggtgggatgatcattgctaatgctgatgttttcgtcgtagCTGCTGGGGCAGGCAGCTCGAAACATGGTAcCTACAGGAAGATGCTATTTTGCGTTCAGAAGATgtgagaagcaattatttcatcatatgtgtgtgtaaggatctttgggtctg Alignment from Spaln_nt2Genome CTGCTGGGGCAGGCAGCTCGAAACATGGTAC-TACAGGAAGATGCCATCTTACACTCGGAAGAT accctatagaggtgggatgatcattgctaatgctgatgttttcgtcgtagCTGCTGGGGCAGGCAGCTCGAAACATGGTACCTACAGGAAGATGCTATTTTGCGTTCAGAAGATgtgagaagcaattatttcatcatatgtgtgtgtaaggatctttgggtctg Alignment from Pairagon CTGCTGGGGCAGGCAGCTCGAAACATGGTA-CTACAGGAAGATGCCATCTTACACTCGGAAGAT accctatagaggtgggatgatcattgctaatgctgatgttttcgtcgtagCTGCTGGGGCAGGCAGCTCGAAACATGGTACCTACAGGAAGATGCTATTTTGCGTTCAGAAGATgtgagaagcaattatttcatcatatgtgtgtgtaaggatctttgggtctg Alignment from Exonerate_protein2genome CTGCTGGGGCAGGCAGCTCGAAACATGGTA-CTACAGGAAGATGCCATCTTACACTCGGAAGAT accctatagaggtgggatgatcattgctaatgctgatgttttcgtcgtagCTGCTGGGGCAGGCAGCTCGAAACATGGTACCTACAGGAAGATGCTATTTTGCGTTCAGAAGATgtgagaagcaattatttcatcatatgtgtgtgtaaggatctttgggtctg Alignment from Exonerate_coding2genome CTGCTGGGGCAGGCAGCTCGAAACATGGTA-CTACAGGAAGATGCCATCTTACACTCGGAAGAT accctatagaggtgggatgatcattgctaatgctgatgttttcgtcgtagCTGCTGGGGCAGGCAGCTCGAAACATGGTACCTACAGGAAGATGCTATTTTGCGTTCAGAAGATgtgagaagcaattatttcatcatatgtgtgtgtaaggatctttgggtctg Alignment from GeneWise CTGCTGGGGCAGGCAGCTCGAAACATG-GTACTACAGGAAGATGCCATCTTACACTCGGAAGAT accctatagaggtgggatgatcattgctaatgctgatgttttcgtcgtagCTGCTGGGGCAGGCAGCTCGAAACATGGTACCTACAGGAAGATGCTATTTTGCGTTCAGAAGATgtgagaagcaattatttcatcatatgtgtgtgtaaggatctttgggtctg #### 2010012O05Rik_ID10004_3 --> 0 - 2 Original Alignment AGTTTAAGGAAGATGGCA-ATAATAACAACACACCTTCAGTACca tgcttgcatcaggagctctaccagtatgcaccatgctttcttttgtgcagAGTTTGAGGAAGATGGCACATAATAACAACGCACTTACAGTACcagtatggatgcttggtcaagtgggcggtggatggaggtagaaggggcattg Alignment from CESAR AGTTTAAGGAAGATGGCA-ATAATAACAACACACCTTCAGTACca tgcttgcatcaggagctctaccagtatgcaccatgctttcttttgtgcagAGTTTGAGGAAGATGGCACATAATAACAACGCACTTACAGTACcagtatggatgcttggtcaagtgggcggtggatggaggtagaaggggcattg Alignment from Spaln_aa2Genome GGAAGATGGCAATAATAACAACACACCTTCAGTACCA tgcttgcatcaggagctctaccagtatgcaccatgctttcttttgtgcagagtttgagGAAGATGGCACATAATAACAACGCACTTACAGTACCAgtatggatgcttggtcaagtgggcggtggatggaggtagaaggggcattg Alignment from Spaln_nt2Genome AGTTTAAGGAAGATGGCA-ATAATAACAACACACCTTCAGTACCA tgcttgcatcaggagctctaccagtatgcaccatgctttcttttgtgcagAGTTTGAGGAAGATGGCACATAATAACAACGCACTTACAGTACCAgtatggatgcttggtcaagtgggcggtggatggaggtagaaggggcattg Alignment from Pairagon AGTTTAAGGAAGATGGCA-ATAATAACAACACACCTTCAGTACCA tgcttgcatcaggagctctaccagtatgcaccatgctttcttttgtgcagAGTTTGAGGAAGATGGCACATAATAACAACGCACTTACAGTACCAgtatggatgcttggtcaagtgggcggtggatggaggtagaaggggcattg Alignment from Exonerate_protein2genome AGTTTAAGGAAGATGGCA-ATAATAACAACACACCTTCAGTACCAGCAAGAAGCTATTCAGAAGAA tgcttgcatcaggagctctaccagtatgcaccatgctttcttttgtgcagAGTTTGAGGAAGATGGCACATAATAACAACGCACTTACAGTACCAGTATGGATGCTTGGTCAAGTGggcggtggatggaggtagaaggggcattg Alignment from Exonerate_coding2genome tgcttgcatcaggagctctaccagtatgcaccatgctttcttttgtgcagagtttgaggaagatggcacataataacaacgcacttacagtaccagtatggatgcttggtcaagtgggcggtggatggaggtagaaggggcattg Alignment from GeneWise tgcttgcatcaggagctctaccagtatgcaccatgctttcttttgtgcagagtttgaggaagatggcacataataacaacgcacttacagtaccagtatggatgcttggtcaagtgggcggtggatggaggtagaaggggcattg #### 9130011E15Rik_ID9675_6 --> 0 - 0 Original Alignment GTCACAGATAATATCAGCCAGAACACT-ATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ataatttttactacaaataaaccaggaaagtctggggtctctctctacagGTCACAGATAATATCAGCCAGAACACTCATCCTGGAATATGTAATGATCAACAGCATATTTGAAGCCATTTTACAGgtaactttaactggcttgtcctttatgtgtagtccttcatttaaaatttt Alignment from CESAR GTCACAGATAATATCAGCCAGAACACT-ATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ataatttttactacaaataaaccaggaaagtctggggtctctctctacagGTCACAGATAATATCAGCCAGAACACTCATCCTGGAATATGTAATGATCAACAGCATATTTGAAGCCATTTTACAGgtaactttaactggcttgtcctttatgtgtagtccttcatttaaaatttt Alignment from Spaln_aa2Genome GTCACAGATAATATCAGCCAGAACACT-ATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ataatttttactacaaataaaccaggaaagtctggggtctctctctacagGTCACAGATAATATCAGCCAGAACACTcATCCTGGAATATGTAATGATCAACAGCATATTTGAAGCCATTTTACAGgtaactttaactggcttgtcctttatgtgtagtccttcatttaaaatttt Alignment from Spaln_nt2Genome GTCACAGATAATATCAGCCAGAACACT-ATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ataatttttactacaaataaaccaggaaagtctggggtctctctctacagGTCACAGATAATATCAGCCAGAACACTCATCCTGGAATATGTAATGATCAACAGCATATTTGAAGCCATTTTACAGgtaactttaactggcttgtcctttatgtgtagtccttcatttaaaatttt Alignment from Pairagon GTCACAGATAATATCAGCCAGAACACT-ATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ataatttttactacaaataaaccaggaaagtctggggtctctctctacagGTCACAGATAATATCAGCCAGAACACTCATCCTGGAATATGTAATGATCAACAGCATATTTGAAGCCATTTTACAGgtaactttaactggcttgtcctttatgtgtagtccttcatttaaaatttt Alignment from Exonerate_protein2genome GTCACAGATAATATCAGCCAGAACACT-ATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ataatttttactacaaataaaccaggaaagtctggggtctctctctacagGTCACAGATAATATCAGCCAGAACACTCATCCTGGAATATGTAATGATCAACAGCATATTTGAAGCCATTTTACAGgtaactttaactggcttgtcctttatgtgtagtccttcatttaaaatttt Alignment from Exonerate_coding2genome GTCACAGATAATATCAGCCAGAACACT-ATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ataatttttactacaaataaaccaggaaagtctggggtctctctctacagGTCACAGATAATATCAGCCAGAACACTCATCCTGGAATATGTAATGATCAACAGCATATTTGAAGCCATTTTACAGgtaactttaactggcttgtcctttatgtgtagtccttcatttaaaatttt Alignment from GeneWise GTCACAGATAATATCAGCCAGAACACT-ATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ataatttttactacaaataaaccaggaaagtctggggtctctctctacagGTCACAGATAATATCAGCCAGAACACTCATCCTGGAATATGTAATGATCAACAGCATATTTGAAGCCATTTTACAGgtaactttaactggcttgtcctttatgtgtagtccttcatttaaaatttt #### A630007B06Rik_ID12190_7 --> 0 - 0 Original Alignment GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTT-ACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aggagtttgtttgatggcaaggtccaaggatctgcctttttcttttttagGAATCAGAAGAAATCAAGTCAAATGAGCCCGATGCGAAGCTCAGGGTTCACAAAAGGAGAACTTGAAAAACAAATGCAAGAAAAATCTGACCAGCTGGAAgtaacttaaattcgtctacactccataaaacactcattctgctggggccg Alignment from CESAR GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTT-ACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aggagtttgtttgatggcaaggtccaaggatctgcctttttcttttttagGAATCAGAAGAAATCAAGTCAAATGAGCCCGATGCGAAGCTCAGGGTTCACAAAAGGAGAACTTGAAAAACAAATGCAAGAAAAATCTGACCAGCTGGAAgtaacttaaattcgtctacactccataaaacactcattctgctggggccg Alignment from Spaln_aa2Genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTT-ACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aggagtttgtttgatggcaaggtccaaggatctgcctttttcttttttagGAATCAGAAGAAATCAAGTCAAATGAGCCCGATGCGAAGCTCAGGGTTcACAAAAGGAGAACTTGAAAAACAAATGCAAGAAAAATCTGACCAGCTGGAAgtaacttaaattcgtctacactccataaaacactcattctgctggggccg Alignment from Spaln_nt2Genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTT-ACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aggagtttgtttgatggcaaggtccaaggatctgcctttttcttttttagGAATCAGAAGAAATCAAGTCAAATGAGCCCGATGCGAAGCTCAGGGTTCACAAAAGGAGAACTTGAAAAACAAATGCAAGAAAAATCTGACCAGCTGGAAgtaacttaaattcgtctacactccataaaacactcattctgctggggccg Alignment from Pairagon GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTT-ACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aggagtttgtttgatggcaaggtccaaggatctgcctttttcttttttagGAATCAGAAGAAATCAAGTCAAATGAGCCCGATGCGAAGCTCAGGGTTCACAAAAGGAGAACTTGAAAAACAAATGCAAGAAAAATCTGACCAGCTGGAAgtaacttaaattcgtctacactccataaaacactcattctgctggggccg Alignment from Exonerate_protein2genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTT-ACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aggagtttgtttgatggcaaggtccaaggatctgcctttttcttttttagGAATCAGAAGAAATCAAGTCAAATGAGCCCGATGCGAAGCTCAGGGTTCACAAAAGGAGAACTTGAAAAACAAATGCAAGAAAAATCTGACCAGCTGGAAgtaacttaaattcgtctacactccataaaacactcattctgctggggccg Alignment from Exonerate_coding2genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGAGTT-ACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aggagtttgtttgatggcaaggtccaaggatctgcctttttcttttttagGAATCAGAAGAAATCAAGTCAAATGAGCCCGATGCGAAGCTCAGGGTTCACAAAAGGAGAACTTGAAAAACAAATGCAAGAAAAATCTGACCAGCTGGAAgtaacttaaattcgtctacactccataaaacactcattctgctggggccg Alignment from GeneWise GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGCTCAGA-GTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG aggagtttgtttgatggcaaggtccaaggatctgcctttttcttttttagGAATCAGAAGAAATCAAGTCAAATGAGCCCGATGCGAAGCTCAGGGTTCACAAAAGGAGAACTTGAAAAACAAATGCAAGAAAAATCTGACCAGCTGGAAgtaacttaaattcgtctacactccataaaacactcattctgctggggccg #### AI846148_ID2143_3 --> 2 - 1 Original Alignment agTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATG-CCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCg gagtagagagagctgaaggctcccagtccctctgacttacctgtccacagaaTCAGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCAGATCCTGTGAGGATGCCCAGCAGAGATAGTAGTGCTCTTAGATTCTCAAGACAACCCATCTCTTCCCACTAGGCTACGGCCTAGAGGACTTCGCCCT---GAACTGCCGagtaagtcaccaagagtccttgggtttggtaggacatcatatagtagggca Alignment from CESAR agTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATG-CCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCg gagtagagagagctgaaggctcccagtccctctgacttacctgtccacagaaTCAGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCAGATCCTGTGAGGATGCCCAGCAGAGATAGTAGTGCTCTTAGATTCTCAAGACAACCCATCTCTTCCCACTAGGCTACGGCCTAGAGGACTTCGCCCT---GAACTGCCGagtaagtcaccaagagtccttgggtttggtaggacatcatatagtagggca Alignment from Spaln_aa2Genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATG-CCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagagagagctgaaggctcccagtccctctgacttacctgtccacagAATCAGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCAGATCCTGTGAGGATGcCCAGCAGAGATAGTAGTGCTCTTAGATTCTCAAGACAACCCATCTCTTCCCACTAGGCTACGGCCTAGAGGACTTCGCCCT---GAACTGCCGAgtaagtcaccaagagtccttgggtttggtaggacatcatatagtagggca Alignment from Spaln_nt2Genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGC-CAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagagagagctgaaggctcccagtccctctgacttacctgtccacagAATCAGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCAGATCCTGTGAGGATGCCCAGCAGAGATAGTAGTGCTCTTAGATTCTCAAGACAACCCATCTCTTCCCACTAGGCTACGGCCTAGAGGACTTCGCCC---TGAACTGCCGAgtaagtcaccaagagtccttgggtttggtaggacatcatatagtagggca Alignment from Pairagon AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATG-CCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagagagagctgaaggctcccagtccctctgacttacctgtccacagAATCAGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCAGATCCTGTGAGGATGCCCAGCAGAGATAGTAGTGCTCTTAGATTCTCAAGACAACCCATCTCTTCCCACTAGGCTACGGCCTAGAGGACTTCGCCC---TGAACTGCCGAgtaagtcaccaagagtccttgggtttggtaggacatcatatagtagggca Alignment from Exonerate_protein2genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATG-CCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagagagagctgaaggctcccagtccctctgacttacctgtccacagAATCAGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCAGATCCTGTGAGGATGCCCAGCAGAGATAGTAGTGCTCTTAGATTCTCAAGACAACCCATCTCTTCCCACTAGGCTACGGCCTAGAGGACTTCGCCCT---GAACTGCCGAgtaagtcaccaagagtccttgggtttggtaggacatcatatagtagggca Alignment from Exonerate_coding2genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATG-CCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagagagagctgaaggctcccagtccctctgacttacctgtccacagAATCAGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCAGATCCTGTGAGGATGCCCAGCAGAGATAGTAGTGCTCTTAGATTCTCAAGACAACCCATCTCTTCCCACTAGGCTACGGCCTAGAGGACTTCGCCCT---GAACTGCCGAgtaagtcaccaagagtccttgggtttggtaggacatcatatagtagggca Alignment from GeneWise AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCA-GCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagagagagctgaaggctcccagtccctctgacttacctgtccacagAATCAGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCAGATCCTGTGAGGATGCCCAGCAGAGATAGTAGTGCTCTTAGATTCTCAAGACAACCCATCTCTTCCCACTAGGCTACGGCCTAGAGGACTTCGCCCT---GAACTGCCGAgtaagtcaccaagagtccttgggtttggtaggacatcatatagtagggca #### Acsl5_ID11610_15 --> 2 - 0 Original Alignment gtCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAG-CTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG atacaaatgtgcttgctctacagttacctggctttccaacctgtctgcaggtCATGTTGGTACTCCAGTAGCATGCAATTTTGTAAAACCTTGAAGATGTAGCAGATATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtaagtgggagtgatacagcacctatctaatgcgcatggggaaaccttcc Alignment from CESAR gtCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAG-CTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG atacaaatgtgcttgctctacagttacctggctttccaacctgtctgcaggtCATGTTGGTACTCCAGTAGCATGCAATTTTGTAAAACCTTGAAGATGTAGCAGATATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtaagtgggagtgatacagcacctatctaatgcgcatggggaaaccttcc Alignment from Spaln_aa2Genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAG-CTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG atacaaatgtgcttgctctacagttacctggctttccaacctgtctgcagGTCATGTTGGTACTCCAGTAGCATGCAATTTTGTAAAAcCTTGAAGATGTAGCAGATATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtaagtgggagtgatacagcacctatctaatgcgcatggggaaaccttcc Alignment from Spaln_nt2Genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAG-CTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG atacaaatgtgcttgctctacagttacctggctttccaacctgtctgcagGTCATGTTGGTACTCCAGTAGCATGCAATTTTGTAAAACCTTGAAGATGTAGCAGATATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtaagtgggagtgatacagcacctatctaatgcgcatggggaaaccttcc Alignment from Pairagon GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAG-CTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG atacaaatgtgcttgctctacagttacctggctttccaacctgtctgcagGTCATGTTGGTACTCCAGTAGCATGCAATTTTGTAAAACCTTGAAGATGTAGCAGATATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtaagtgggagtgatacagcacctatctaatgcgcatggggaaaccttcc Alignment from Exonerate_protein2genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAG-CTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG atacaaatgtgcttgctctacagttacctggctttccaacctgtctgcagGTCATGTTGGTACTCCAGTAGCATGCAATTTTGTAAAACCTTGAAGATGTAGCAGATATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtaagtgggagtgatacagcacctatctaatgcgcatggggaaaccttcc Alignment from Exonerate_coding2genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAG-CTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG atacaaatgtgcttgctctacagttacctggctttccaacctgtctgcagGTCATGTTGGTACTCCAGTAGCATGCAATTTTGTAAAACCTTGAAGATGTAGCAGATATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtaagtgggagtgatacagcacctatctaatgcgcatggggaaaccttcc Alignment from GeneWise GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAG-CTGGAAGATGTGGCTGACATGAACTACTTTTCAGTAAACAACGAAGGCGAG atacaaatgtgcttgctctacagttacctggctttccaacctgtctgcagGTCATGTTGGTACTCCAGTAGCATGCAATTTTGTAAAACCTTGAAGATGTAGCAGATATGAACTACTTTTCAGTAAACAATAAAGGTGAGgtaagtgggagtgatacagcacctatctaatgcgcatggggaaaccttcc #### Acsl5_ID11614_19 --> 0 - 0 Original Alignment TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATT-GGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG tagttacaacccttgggtattgtctgtttctcttaattgttattttttagTGCGTAAAAGAAGCCATTTTAGAGGACTTGCAGAAAATTCGGGAAGGAGGGCGGCTTGAAATCCCTTGAGCAGgtgagtatgtggtatgccttttgcagttcaagttctcaaggtctagctag Alignment from CESAR TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATT-GGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG tagttacaacccttgggtattgtctgtttctcttaattgttattttttagTGCGTAAAAGAAGCCATTTTAGAGGACTTGCAGAAAATTCGGGAAGGAGGGCGGCTTGAAATCCCTTGAGCAGgtgagtatgtggtatgccttttgcagttcaagttctcaaggtctagctag Alignment from Spaln_aa2Genome TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATT-GGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG tagttacaacccttgggtattgtctgtttctcttaattgttattttttagTGCGTAAAAGAAGCCATTTTAGAGGACTTGCAGAAAATTcGGGAAGGAGGGCGGCTTGAAATCCCTTGAGCAGgtgagtatgtggtatgccttttgcagttcaagttctcaaggtctagctag Alignment from Spaln_nt2Genome TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATTGG-GAAAGAGGGTGGCCTGAAATCCTTTGAGCAG tagttacaacccttgggtattgtctgtttctcttaattgttattttttagTGCGTAAAAGAAGCCATTTTAGAGGACTTGCAGAAAATTCGGGAAGGAGGGCGGCTTGAAATCCCTTGAGCAGgtgagtatgtggtatgccttttgcagttcaagttctcaaggtctagctag Alignment from Pairagon TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATT-GGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG tagttacaacccttgggtattgtctgtttctcttaattgttattttttagTGCGTAAAAGAAGCCATTTTAGAGGACTTGCAGAAAATTCGGGAAGGAGGGCGGCTTGAAATCCCTTGAGCAGgtgagtatgtggtatgccttttgcagttcaagttctcaaggtctagctag Alignment from Exonerate_protein2genome TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATT-GGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG tagttacaacccttgggtattgtctgtttctcttaattgttattttttagTGCGTAAAAGAAGCCATTTTAGAGGACTTGCAGAAAATTCGGGAAGGAGGGCGGCTTGAAATCCCTTGAGCAGgtgagtatgtggtatgccttttgcagttcaagttctcaaggtctagctag Alignment from Exonerate_coding2genome TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAAATT-GGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG tagttacaacccttgggtattgtctgtttctcttaattgttattttttagTGCGTAAAAGAAGCCATTTTAGAGGACTTGCAGAAAATTCGGGAAGGAGGGCGGCTTGAAATCCCTTGAGCAGgtgagtatgtggtatgccttttgcagttcaagttctcaaggtctagctag Alignment from GeneWise TGTGTAAAGGAAGCCATTTTAGAAGACTTGCAGAAA-ATTGGGAAAGAGGGTGGCCTGAAATCCTTTGAGCAG tagttacaacccttgggtattgtctgtttctcttaattgttattttttagTGCGTAAAAGAAGCCATTTTAGAGGACTTGCAGAAAATTCGGGAAGGAGGGCGGCTTGAAATCCCTTGAGCAGgtgagtatgtggtatgccttttgcagttcaagttctcaaggtctagctag #### Actn3_ID691_19 --> 0 - 0 Original Alignment GACCGG AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGA-GCTTGTCTCATCTCCATGGGTTACGATCTG GACCGGgtatttgacttcacctgaattatgactctgttttctgctcacagAAGCGGAATGGGATGATGGAGCCCGACGACTTCCGACGCTTGTCTCATCTCCATGGGTTATGATCTGgtgagtaccttgcccagttctaacacaccattagatcagatctcctcctt Alignment from CESAR GACCGG AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGA-GCTTGTCTCATCTCCATGGGTTACGATCTG GACCGGgtgagtgacttcacctgaattatgactctgttttctgctcacagAAGCGGAATGGGATGATGGAGCCCGACGACTTCCGACGCTTGTCTCATCTCCATGGGTTATGATCTGgtgagtaccttgcccagttctaacacaccattagatcagatctcctcctt Alignment from Spaln_aa2Genome GACCGG AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGA-GCTTGTCTCATCTCCATGGGTTACGATCTG GACCGGgtatttgacttcacctgaattatgactctgttttctgctcacagAAGCGGAATGGGATGATGGAGCCCGACGACTTCCGAcGCTTGTCTCATCTCCATGGGTTATGATCTGgtgagtaccttgcccagttctaacacaccattagatcagatctcctcctt Alignment from Spaln_nt2Genome GACCGG AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGA-GCTTGTCTCATCTCCATGGGTTACGATCTG GACCGGgtatttgacttcacctgaattatgactctgttttctgctcacagAAGCGGAATGGGATGATGGAGCCCGACGACTTCCGACGCTTGTCTCATCTCCATGGGTTATGATCTGgtgagtaccttgcccagttctaacacaccattagatcagatctcctcctt Alignment from Pairagon GACCGG AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGA-GCTTGTCTCATCTCCATGGGTTACGATCTG GACCGGgtatttgacttcacctgaattatgactctgttttctgctcacagAAGCGGAATGGGATGATGGAGCCCGACGACTTCCGACGCTTGTCTCATCTCCATGGGTTATGATCTGgtgagtaccttgcccagttctaacacaccattagatcagatctcctcctt Alignment from Exonerate_protein2genome GACCGG AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGA-GCTTGTCTCATCTCCATGGGTTACGATCTG GACCGGgtatttgacttcacctgaattatgactctgttttctgctcacagAAGCGGAATGGGATGATGGAGCCCGACGACTTCCGACGCTTGTCTCATCTCCATGGGTTATGATCTGgtgagtaccttgcccagttctaacacaccattagatcagatctcctcctt Alignment from Exonerate_coding2genome GACCGG AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGA-GCTTGTCTCATCTCCATGGGTTACGATCTG GACCGGgtatttgacttcacctgaattatgactctgttttctgctcacagAAGCGGAATGGGATGATGGAGCCCGACGACTTCCGACGCTTGTCTCATCTCCATGGGTTATGATCTGgtgagtaccttgcccagttctaacacaccattagatcagatctcctcctt Alignment from GeneWise GACCGG AAGCGGAATGGGATGATGGAGCCCGACGACTTCCGA-GCTTGTCTCATCTCCATGGGTTACGATCTG GACCGGgtatttgacttcacctgaattatgactctgttttctgctcacagAAGCGGAATGGGATGATGGAGCCCGACGACTTCCGACGCTTGTCTCATCTCCATGGGTTATGATCTGgtgagtaccttgcccagttctaacacaccattagatcagatctcctcctt #### Actn3_ID692_18 --> 0 - 0 Original Alignment CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCC-ATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCACTTTGACCGG AAGCGG caagttacaggttaagctctatatgaagcctttttcctccttcccccaagCACATTCGTGTGGGCTGGGAGCAACTACTTACCTCCCATTGCCCGCACCATCAATGAAGTTGATAACCAGGTACTTACTAGAGATGCCAAGGGCCTGAGCCAGGAGCAACTCAATGAATTCCGTGCCTCCTTCAATTACTTTGACCGGgtgagtgacttcacctgaattaccttgctttaactttccaatagAAGCGG Alignment from CESAR CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCC-ATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCACTTTGACCGG AAGCGG caagttacaggttaagctctatatgaagcctttttcctccttcccccaagCACATTCGTGTGGGCTGGGAGCAACTACTTACCTCCCATTGCCCGCACCATCAATGAAGTTGATAACCAGGTACTTACTAGAGATGCCAAGGGCCTGAGCCAGGAGCAACTCAATGAATTCCGTGCCTCCTTCAATTACTTTGACCGGgtgagtgacttcacctgaattatgactctgttttctgctcacagAAGCGG Alignment from Spaln_aa2Genome CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCC-ATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCACTTTGACCGG AAGCGG caagttacaggttaagctctatatgaagcctttttcctccttcccccaagCACATTCGTGTGGGCTGGGAGCAACTACTTACCTCCcATTGCCCGCACCATCAATGAAGTTGATAACCAGGTACTTACTAGAGATGCCAAGGGCCTGAGCCAGGAGCAACTCAATGAATTCCGTGCCTCCTTCAATTACTTTGACCGGgtgagtgacttcacctgaattaccttgctttaactttccaatagAAGCGG Alignment from Spaln_nt2Genome CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCC-ATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCACTTTGACCGG AAGCGG caagttacaggttaagctctatatgaagcctttttcctccttcccccaagCACATTCGTGTGGGCTGGGAGCAACTACTTACCTCCCATTGCCCGCACCATCAATGAAGTTGATAACCAGGTACTTACTAGAGATGCCAAGGGCCTGAGCCAGGAGCAACTCAATGAATTCCGTGCCTCCTTCAATTACTTTGACCGGgtgagtgacttcacctgaattaccttgctttaactttccaatagAAGCGG Alignment from Pairagon CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCT-CCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCACTTTGACCGG AAGCGG caagttacaggttaagctctatatgaagcctttttcctccttcccccaagCACATTCGTGTGGGCTGGGAGCAACTACTTACCTCCCATTGCCCGCACCATCAATGAAGTTGATAACCAGGTACTTACTAGAGATGCCAAGGGCCTGAGCCAGGAGCAACTCAATGAATTCCGTGCCTCCTTCAATTACTTTGACCGGgtgagtgacttcacctgaattaccttgctttaactttccaatagAAGCGG Alignment from Exonerate_protein2genome CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCC-ATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCACTTTGACCGG AAGCGG caagttacaggttaagctctatatgaagcctttttcctccttcccccaagCACATTCGTGTGGGCTGGGAGCAACTACTTACCTCCCATTGCCCGCACCATCAATGAAGTTGATAACCAGGTACTTACTAGAGATGCCAAGGGCCTGAGCCAGGAGCAACTCAATGAATTCCGTGCCTCCTTCAATTACTTTGACCGGgtgagtgacttcacctgaattaccttgctttaactttccaatagAAGCGG Alignment from Exonerate_coding2genome CACATTCGTGTGGGCTGGGAGCAGTTGCTCACCTCC-ATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCACTTTGACCGG AAGCGG caagttacaggttaagctctatatgaagcctttttcctccttcccccaagCACATTCGTGTGGGCTGGGAGCAACTACTTACCTCCCATTGCCCGCACCATCAATGAAGTTGATAACCAGGTACTTACTAGAGATGCCAAGGGCCTGAGCCAGGAGCAACTCAATGAATTCCGTGCCTCCTTCAATTACTTTGACCGGgtgagtgacttcacctgaattaccttgctttaactttccaatagAAGCGG Alignment from GeneWise CACATTCGTGTGGGCTGGGAGCAGTTGCTCACC-TCCATTGCCCGCACCATCAATGAGGTCGAGAACCAGGTACTGACCCGAGATGCCAAGGGCCTGAGCCAGGAGCAGCTCAACGAATTCCGCGCCTCCTTCAACCACTTTGACCGG AAGCGG caagttacaggttaagctctatatgaagcctttttcctccttcccccaagCACATTCGTGTGGGCTGGGAGCAACTACTTACCTCCCATTGCCCGCACCATCAATGAAGTTGATAACCAGGTACTTACTAGAGATGCCAAGGGCCTGAGCCAGGAGCAACTCAATGAATTCCGTGCCTCCTTCAATTACTTTGACCGGgtgagtgacttcacctgaattaccttgctttaactttccaatagAAGCGG #### Actn3_ID693_17 --> 0 - 0 Original Alignment GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTC-TTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtaatgggtttggagaccttaccttcacccgtgtcttacccagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAATATCATCAATTACAAGAGCAACATCGACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgaggtctcacccataagaaaagtactggctcccagacggttgccagtc Alignment from CESAR GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTC-TTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtaatgggtttggagaccttaccttcacccgtgtcttacccagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAATATCATCAATTACAAGAGCAACATCGACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgaggtctcacccataagaaaagtactggctcccagacggttgccagtc Alignment from Spaln_aa2Genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTC-TTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtaatgggtttggagaccttaccttcacccgtgtcttacccagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAATATCATCAATTACAAGAGCAACATCGACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCcTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgaggtctcacccataagaaaagtactggctcccagacggttgccagtc Alignment from Spaln_nt2Genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGT-CTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtaatgggtttggagaccttaccttcacccgtgtcttacccagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAATATCATCAATTACAAGAGCAACATCGACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgaggtctcacccataagaaaagtactggctcccagacggttgccagtc Alignment from Pairagon GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGT-CTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtaatgggtttggagaccttaccttcacccgtgtcttacccagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAATATCATCAATTACAAGAGCAACATCGACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgaggtctcacccataagaaaagtactggctcccagacggttgccagtc Alignment from Exonerate_protein2genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTC-TTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtaatgggtttggagaccttaccttcacccgtgtcttacccagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAATATCATCAATTACAAGAGCAACATCGACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgaggtctcacccataagaaaagtactggctcccagacggttgccagtc Alignment from Exonerate_coding2genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTC-TTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtaatgggtttggagaccttaccttcacccgtgtcttacccagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAATATCATCAATTACAAGAGCAACATCGACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgaggtctcacccataagaaaagtactggctcccagacggttgccagtc Alignment from GeneWise GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATCATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTA-GTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtaatgggtttggagaccttaccttcacccgtgtcttacccagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAATATCATCAATTACAAGAGCAACATCGACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtgaggtctcacccataagaaaagtactggctcccagacggttgccagtc #### Actn3_ID694_16 --> 0 - 0 Original Alignment GTCAGA---AAGCTGGTA-CCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG acactttactattgcagatttggttatcgctgaagggggcatggcctcagGTCAGAAAAAAACTTGCCCCCTGCCCGTGACCAGACATTCCAAGAGAAGCTAGCCCGGCAGCAAGTTAATGAGAGGTCACGGCGGCAGTTTACAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAGGTGGAGgtagaagttgggaggctgggcccgtagagatcagcacggagcaaagtaat Alignment from CESAR GTCAGA---AAGCTGGTACCC-AGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG acactttactattgcagatttggttatcgctgaagggggcatggcctcagGTCAGAAAAAAACTTGCCCCCTGCCCGTGACCAGACATTCCAAGAGAAGCTAGCCCGGCAGCAAGTTAATGAGAGGTCACGGCGGCAGTTTACAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAGGTGGAGgtagaagttgggaggctgggcccgtagagatcagcacggagcaaagtaat Alignment from Spaln_aa2Genome GAAAG---CTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG acactttactattgcagatttggttatcgctgaagggggcatggcctcaggtcagAAAAAAACTTGCCCCCTGCCCGTGACCAGACATTCCAAGAGAAGCTAGCCCGGCAGCAAGTTAATGAGAGGTCACGGCGGCAGTTTACAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAGGTGGAGgtagaagttgggaggctgggcccgtagagatcagcacggagcaaagtaat Alignment from Spaln_nt2Genome GTCAGAAAG---CTGGTACCCAGCC-GTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG acactttactattgcagatttggttatcgctgaagggggcatggcctcagGTCAGAAAAAAACTTGCCCCCTGCCCGTGACCAGACATTCCAAGAGAAGCTAGCCCGGCAGCAAGTTAATGAGAGGTCACGGCGGCAGTTTACAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAGGTGGAGgtagaagttgggaggctgggcccgtagagatcagcacggagcaaagtaat Alignment from Pairagon GTCAGAAA--------------GCTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG acactttactattgcagatttggttatcgctgaagggggcatggcctcagGTCAGAAAAAAACTTGCCCCCTGC----------CCGTGACCAGACATTCCAAGAGAAGCTAGCCCGGCAGCAAGTTAATGAGAGGTCACGGCGGCAGTTTACAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAGGTGGAGgtagaagttgggaggctgggcccgtagagatcagcacggagcaaagtaat Alignment from Exonerate_protein2genome GTCAGAAAG----CTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG acactttactattgcagatttggttatcgctgaagggggcatggcctcagGTCAGAAAAAAACTTGCCCCCTGCCCGTGACCAGACATTCCAAGAGAAGCTAGCCCGGCAGCAAGTTAATGAGAGGTCACGGCGGCAGTTTACAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAGGTGGAGgtagaagttgggaggctgggcccgtagagatcagcacggagcaaagtaat Alignment from Exonerate_coding2genome GTCAGAAAG----CTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG acactttactattgcagatttggttatcgctgaagggggcatggcctcagGTCAGAAAAAAACTTGCCCCCTGCCCGTGACCAGACATTCCAAGAGAAGCTAGCCCGGCAGCAAGTTAATGAGAGGTCACGGCGGCAGTTTACAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAGGTGGAGgtagaagttgggaggctgggcccgtagagatcagcacggagcaaagtaat Alignment from GeneWise -----------GTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG acactttactattgcagatttggttatcgctgaagggggcatggcctcaggtcagAAAAAAACTTGCCCCCTGCCCGTGACCAGACATTCCAAGAGAAGCTAGCCCGGCAGCAAGTTAATGAGAGGTCACGGCGGCAGTTTACAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAGGTGGAGgtagaagttgggaggctgggcccgtagagatcagcacggagcaaagtaat #### Adrbk1_ID476_19 --> 0 - 0 Original Alignment CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATC-AAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT gtgagtatctgggtgcaccctaatttcactcaatctttttgaatggacagCAAAGCCTCCTGACAATGGAGGAAATTCAGTCTGTTGAAGGGGCAGAGATCCAAGGAACACAAGTGTCTACTACTTAAAGTCCGAGGTGGCAAGCAGTTTGTATTACAGTGTGATgtgagtgagtgtgaggggtgaggctgatggtaacgtttgaaggcaaatgc Alignment from CESAR CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATC-AAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT gtgagtatctgggtgcaccctaatttcactcaatctttttgaatggacagCAAAGCCTCCTGACAATGGAGGAAATTCAGTCTGTTGAAGGGGCAGAGATCCAAGGAACACAAGTGTCTACTACTTAAAGTCCGAGGTGGCAAGCAGTTTGTATTACAGTGTGATgtgagtgagtgtgaggggtgaggctgatggtaacgtttgaaggcaaatgc Alignment from Spaln_aa2Genome CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATC-AAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT gtgagtatctgggtgcaccctaatttcactcaatctttttgaatggacagCAAAGCCTCCTGACAATGGAGGAAATTCAGTCTGTTGAAGGGGCAGAGATCcAAGGAACACAAGTGTCTACTACTTAAAGTCCGAGGTGGCAAGCAGTTTGTATTACAGTGTGATgtgagtgagtgtgaggggtgaggctgatggtaacgtttgaaggcaaatgc Alignment from Spaln_nt2Genome CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATC-AAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT gtgagtatctgggtgcaccctaatttcactcaatctttttgaatggacagCAAAGCCTCCTGACAATGGAGGAAATTCAGTCTGTTGAAGGGGCAGAGATCCAAGGAACACAAGTGTCTACTACTTAAAGTCCGAGGTGGCAAGCAGTTTGTATTACAGTGTGATgtgagtgagtgtgaggggtgaggctgatggtaacgtttgaaggcaaatgc Alignment from Pairagon CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGAT-CAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT gtgagtatctgggtgcaccctaatttcactcaatctttttgaatggacagCAAAGCCTCCTGACAATGGAGGAAATTCAGTCTGTTGAAGGGGCAGAGATCCAAGGAACACAAGTGTCTACTACTTAAAGTCCGAGGTGGCAAGCAGTTTGTATTACAGTGTGATgtgagtgagtgtgaggggtgaggctgatggtaacgtttgaaggcaaatgc Alignment from Exonerate_protein2genome CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATC-AAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT gtgagtatctgggtgcaccctaatttcactcaatctttttgaatggacagCAAAGCCTCCTGACAATGGAGGAAATTCAGTCTGTTGAAGGGGCAGAGATCCAAGGAACACAAGTGTCTACTACTTAAAGTCCGAGGTGGCAAGCAGTTTGTATTACAGTGTGATgtgagtgagtgtgaggggtgaggctgatggtaacgtttgaaggcaaatgc Alignment from Exonerate_coding2genome CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAGATC-AAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT gtgagtatctgggtgcaccctaatttcactcaatctttttgaatggacagCAAAGCCTCCTGACAATGGAGGAAATTCAGTCTGTTGAAGGGGCAGAGATCCAAGGAACACAAGTGTCTACTACTTAAAGTCCGAGGTGGCAAGCAGTTTGTATTACAGTGTGATgtgagtgagtgtgaggggtgaggctgatggtaacgtttgaaggcaaatgc Alignment from GeneWise CAGAGCCTCCTGACCATGGAGGAGATCCAGTCAGTGGAAGAGACACAG-ATCAAGGAACGCAAGTGTCTCCTGCTTAAGATCCGAGGTGGCAAGCAGTTTGTCCTGCAGTGTGAT gtgagtatctgggtgcaccctaatttcactcaatctttttgaatggacagCAAAGCCTCCTGACAATGGAGGAAATTCAGTCTGTTGAAGGGGCAGAGATCCAAGGAACACAAGTGTCTACTACTTAAAGTCCGAGGTGGCAAGCAGTTTGTATTACAGTGTGATgtgagtgagtgtgaggggtgaggctgatggtaacgtttgaaggcaaatgc #### Adrbk1_ID477_18 --> 2 - 0 Original Alignment acTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTC-CCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gacaagcgtacggtgatttggtcataggcttaatgttttctctttcatagacTATGCCTTGGGTAAGGACTGCATAGTAGATGGCTACATGTCTGAGATGGGCAACCCCTTCCTGACCCAGTGGCAACAGAGATACTTCTACTTGTTCCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtaaaggaaaggacaggcagagcattaatggccctctgtgtctcttatga Alignment from CESAR acTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCC-AACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gacaagcgtacggtgatttggtcataggcttaatgttttctctttcatagacTATGCCTTGGGTAAGGACTGCATAGTAGATGGCTACATGTCTGAGATGGGCAACCCCTTCCTGACCCAGTGGCAACAGAGATACTTCTACTTGTTCCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtaaaggaaaggacaggcagagcattaatggccctctgtgtctcttatga Alignment from Spaln_aa2Genome ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCC-AACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gacaagcgtacggtgatttggtcataggcttaatgttttctctttcatagACTATGCCTTGGGTAAGGACTGCATAGTAGATGGCTACATGTCTGAGATGGGCAACCCCTTCCTGACCCAGTGGCAACAGAGATACTTCTACTTGTTCCCCcAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtaaaggaaaggacaggcagagcattaatggccctctgtgtctcttatga Alignment from Spaln_nt2Genome ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCC-CAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gacaagcgtacggtgatttggtcataggcttaatgttttctctttcatagACTATGCCTTGGGTAAGGACTGCATAGTAGATGGCTACATGTCTGAGATGGGCAACCCCTTCCTGACCCAGTGGCAACAGAGATACTTCTACTTGTTCCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtaaaggaaaggacaggcagagcattaatggccctctgtgtctcttatga Alignment from Pairagon ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTT-CCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gacaagcgtacggtgatttggtcataggcttaatgttttctctttcatagACTATGCCTTGGGTAAGGACTGCATAGTAGATGGCTACATGTCTGAGATGGGCAACCCCTTCCTGACCCAGTGGCAACAGAGATACTTCTACTTGTTCCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtaaaggaaaggacaggcagagcattaatggccctctgtgtctcttatga Alignment from Exonerate_protein2genome ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTC-CCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gacaagcgtacggtgatttggtcataggcttaatgttttctctttcatagACTATGCCTTGGGTAAGGACTGCATAGTAGATGGCTACATGTCTGAGATGGGCAACCCCTTCCTGACCCAGTGGCAACAGAGATACTTCTACTTGTTCCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtaaaggaaaggacaggcagagcattaatggccctctgtgtctcttatga Alignment from Exonerate_coding2genome ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTC-CCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gacaagcgtacggtgatttggtcataggcttaatgttttctctttcatagACTATGCCTTGGGTAAGGACTGCATAGTAGATGGCTACATGTCTGAGATGGGCAACCCCTTCCTGACCCAGTGGCAACAGAGATACTTCTACTTGTTCCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtaaaggaaaggacaggcagagcattaatggccctctgtgtctcttatga Alignment from GeneWise ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCC-AACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG gacaagcgtacggtgatttggtcataggcttaatgttttctctttcatagACTATGCCTTGGGTAAGGACTGCATAGTAGATGGCTACATGTCTGAGATGGGCAACCCCTTCCTGACCCAGTGGCAACAGAGATACTTCTACTTGTTCCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtaaaggaaaggacaggcagagcattaatggccctctgtgtctcttatga #### Adrbk1_ID479_16 --> 0 - 0 Original Alignment TACCCTCCTCCACTGATCCCCCCACGT-GGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctttggtgccactctcttctacaatgagtataatttggtcttgccctagTACCCTCCTCCACTGATCCCCCAACGTCGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgcaagtaacctgtttagctcaggatcctgtgtctggatcctgaagctgag Alignment from CESAR TACCCTCCTCCACTGATCCCCCCACGT-GGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctttggtgccactctcttctacaatgagtataatttggtcttgccctagTACCCTCCTCCACTGATCCCCCAACGTCGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgcaagtaacctgtttagctcaggatcctgtgtctggatcctgaagctgag Alignment from Spaln_aa2Genome TACCCTCCTCCACTGATCCCCCCACGT-GGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctttggtgccactctcttctacaatgagtataatttggtcttgccctagTACCCTCCTCCACTGATCCCCCAACGTcGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgcaagtaacctgtttagctcaggatcctgtgtctggatcctgaagctgag Alignment from Spaln_nt2Genome TACCCTCCTCCACTGATCCCCCCACGT-GGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctttggtgccactctcttctacaatgagtataatttggtcttgccctagTACCCTCCTCCACTGATCCCCCAACGTCGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgcaagtaacctgtttagctcaggatcctgtgtctggatcctgaagctgag Alignment from Pairagon TACCCTCCTCCACTGATCCCCCCACGT-GGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctttggtgccactctcttctacaatgagtataatttggtcttgccctagTACCCTCCTCCACTGATCCCCCAACGTCGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgcaagtaacctgtttagctcaggatcctgtgtctggatcctgaagctgag Alignment from Exonerate_protein2genome TACCCTCCTCCACTGATCCCCCCACGT-GGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctttggtgccactctcttctacaatgagtataatttggtcttgccctagTACCCTCCTCCACTGATCCCCCAACGTCGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgcaagtaacctgtttagctcaggatcctgtgtctggatcctgaagctgag Alignment from Exonerate_coding2genome TACCCTCCTCCACTGATCCCCCCACGT-GGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctttggtgccactctcttctacaatgagtataatttggtcttgccctagTACCCTCCTCCACTGATCCCCCAACGTCGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgcaagtaacctgtttagctcaggatcctgtgtctggatcctgaagctgag Alignment from GeneWise TACCCTCCTCCACTGATCCCCCCA-CGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGTTACTGGACAG tctttggtgccactctcttctacaatgagtataatttggtcttgccctagTACCCTCCTCCACTGATCCCCCAACGTCGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGGCAAGTAACCTgtttagctcaggatcctgtgtctggatcctgaagctgag #### Adrbk1_ID481_14 --> 0 - 2 Original Alignment GCTGTAGAGCTGCCTGACTCCTTC-TCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGC---CGTgg gttaggttctcttcctagttactgttgaactgggtgcctctgccctacagGCTGTAGAACTGCTTGATTCCTTCCTCCCCTGAACTCCGCTCCCTGTTGGGGGGTTTGCTGCAGAGGGACATCAACCGGAGGTCAGGCTGTCTGGGCCGTCAGgggtaagttcgtgaccttccagccatggcttttatttctgttagcccaagat Alignment from CESAR GCTGTAGAGCTGCCTGACTCCTTC-TCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGT---gg gttaggttctcttcctagttactgttgaactgggtgcctctgccctacagGCTGTAGAACTGCTTGATTCCTTCCTCCCCTGAACTCCGCTCCCTGTTGGGGGGTTTGCTGCAGAGGGACATCAACCGGAGGTCAGGCTGTCTGGGCCGTCAGgggtaagttcgtgaccttccagccatggcttttatttctgttagcccaagat Alignment from Spaln_aa2Genome GCTGTAGAGCTGCCTGACTCCTTC-TCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGTGGG-- gttaggttctcttcctagttactgttgaactgggtgcctctgccctacagGCTGTAGAACTGCTTGATTCCTTCcTCCCCTGAACTCCGCTCCCTGTTGGGGGGTTTGCTGCAGAGGGACATCAACCGGAGGTCAGGCTGTCTGGGCCGTCAGGGgtaagttcgtgaccttccagccatggcttttatttctgttagcccaagat Alignment from Spaln_nt2Genome GCTGTAGAGCTGCCTGACTCCTTC-TCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGT---GG gttaggttctcttcctagttactgttgaactgggtgcctctgccctacagGCTGTAGAACTGCTTGATTCCTTCCTCCCCTGAACTCCGCTCCCTGTTGGGGGGTTTGCTGCAGAGGGACATCAACCGGAGGTCAGGCTGTCTGGGCCGTCAGGGgtaagttcgtgaccttccagccatggcttttatttctgttagcccaagat Alignment from Pairagon GCTGTAGAGCTGCCTGACTCCTT-CTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGT---GG gttaggttctcttcctagttactgttgaactgggtgcctctgccctacagGCTGTAGAACTGCTTGATTCCTTCCTCCCCTGAACTCCGCTCCCTGTTGGGGGGTTTGCTGCAGAGGGACATCAACCGGAGGTCAGGCTGTCTGGGCCGTCAGGGgtaagttcgtgaccttccagccatggcttttatttctgttagcccaagat Alignment from Exonerate_protein2genome GCTGTAGAGCTGCCTGACTCCTTC-TCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGT---GG gttaggttctcttcctagttactgttgaactgggtgcctctgccctacagGCTGTAGAACTGCTTGATTCCTTCCTCCCCTGAACTCCGCTCCCTGTTGGGGGGTTTGCTGCAGAGGGACATCAACCGGAGGTCAGGCTGTCTGGGCCGTCAGGGgtaagttcgtgaccttccagccatggcttttatttctgttagcccaagat Alignment from Exonerate_coding2genome GCTGTAGAGCTGCCTGACTCCTTC-TCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGT---GG gttaggttctcttcctagttactgttgaactgggtgcctctgccctacagGCTGTAGAACTGCTTGATTCCTTCCTCCCCTGAACTCCGCTCCCTGTTGGGGGGTTTGCTGCAGAGGGACATCAACCGGAGGTCAGGCTGTCTGGGCCGTCAGGGgtaagttcgtgaccttccagccatggcttttatttctgttagcccaagat Alignment from GeneWise GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGTGGG-- gttaggttctcttcctagttactgttgaactgggtgcctctgccctacaggctgtagAACTGCTTGATTCCTTCC------TCCCCTGAACTCCGCTCCCTGTTGGGGGGTTTGCTGCAGAGGGACATCAACCGGAGGTCAGGCTGTCTGGGCCGTCAGGGgtaagttcgtgaccttccagccatggcttttatttctgttagcccaagat #### Adrbk1_ID482_13 --> 1 - 0 Original Alignment aCACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGC-ATGACGTTGACGATG cctatcagtctagttctgttccccatccctgttttgttttgactttctagcCACAGTCACTTCCGGCAGCACAAGACGAAAGATACGCATGACATTGACCGCCATGACACTCACTATGgtacggctaatagtagcattaagaactatgtcgtgcataatcataaatcc Alignment from CESAR aCACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGC-ATGACGTTGACGATG cctatcagtctagttctgttccccatccctgttttgttttgactttctagcCACAGTCACTTCCGGCAGCACAAGACGAAAGATACGCATGACATTGACCGCCATGACACTCACTATGgtacggctaatagtagcattaagaactatgtcgtgcataatcataaatcc Alignment from Spaln_aa2Genome ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGC-ATGACGTTGACGATG cctatcagtctagttctgttccccatccctgttttgttttgactttctagCCACAGTCACTTCCGGCAGCACAAGACGAAAGATACGCATGACATTGACCGCcATGACACTCACTATGgtacggctaatagtagcattaagaactatgtcgtgcataatcataaatcc Alignment from Spaln_nt2Genome ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGC-ATGACGTTGACGATG cctatcagtctagttctgttccccatccctgttttgttttgactttctagCCACAGTCACTTCCGGCAGCACAAGACGAAAGATACGCATGACATTGACCGCCATGACACTCACTATGgtacggctaatagtagcattaagaactatgtcgtgcataatcataaatcc Alignment from Pairagon ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCG-CATGACGTTGACGATG cctatcagtctagttctgttccccatccctgttttgttttgactttctagCCACAGTCACTTCCGGCAGCACAAGACGAAAGATACGCATGACATTGACCGCCATGACACTCACTATGgtacggctaatagtagcattaagaactatgtcgtgcataatcataaatcc Alignment from Exonerate_protein2genome ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGC-ATGACGTTGACGATG cctatcagtctagttctgttccccatccctgttttgttttgactttctagCCACAGTCACTTCCGGCAGCACAAGACGAAAGATACGCATGACATTGACCGCCATGACACTCACTATGgtacggctaatagtagcattaagaactatgtcgtgcataatcataaatcc Alignment from Exonerate_coding2genome ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGC-ATGACGTTGACGATG cctatcagtctagttctgttccccatccctgttttgttttgactttctagCCACAGTCACTTCCGGCAGCACAAGACGAAAGATACGCATGACATTGACCGCCATGACACTCACTATGgtacggctaatagtagcattaagaactatgtcgtgcataatcataaatcc Alignment from GeneWise ACACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGAC-CGCATGACGTTGACGATG cctatcagtctagttctgttccccatccctgttttgttttgactttctagCCACAGTCACTTCCGGCAGCACAAGACGAAAGATACGCATGACATTGACCGCCATGACACTCACTATGgtacggctaatagtagcattaagaactatgtcgtgcataatcataaatcc #### Adrbk1_ID486_9 --> 0 - 1 Original Alignment GACTGCCCCTTCATCGTGTGCATGTCATATGCATTC-CACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACg gtGGGGAC ccagtgttagcctgccttccatgattcaattattttcgtaccttttctagGACTGTTCTTTCACTGTGTGCATGTCATATGCATTCCCACACACCAGACAAGCTAAGCTTCATCCTGGACCTTATGAATggtataatagtttaggggatggcctttttttctttgacactaggtGGGGAA Alignment from CESAR GACTGCCCCTTCATCGTGTGCATGTCATATGCATTC-CACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACg gtGGGGAC ccagtgttagcctgccttccatgattcaattattttcgtaccttttctagGACTGTTCTTTCACTGTGTGCATGTCATATGCATTCCCACACACCAGACAAGCTAAGCTTCATCCTGGACCTTATGAATggtataatagtttaggggatggacacctgctctgtccctgcaggtGGGGAA Alignment from Spaln_aa2Genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTC-CACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC ccagtgttagcctgccttccatgattcaattattttcgtaccttttctagGACTGTTCTTTCACTGTGTGCATGTCATATGCATTCcCACACACCAGACAAGCTAAGCTTCATCCTGGACCTTATGAATGgtataatagtttaggggatggcctttttttctttgacactagGTGGGGAA Alignment from Spaln_nt2Genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATT-CCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC ccagtgttagcctgccttccatgattcaattattttcgtaccttttctagGACTGTTCTTTCACTGTGTGCATGTCATATGCATTCCCACACACCAGACAAGCTAAGCTTCATCCTGGACCTTATGAATGgtataatagtttaggggatggcctttttttctttgacactagGTGGGGAA Alignment from Pairagon GACTGCCCCTTCATCGTGTGCATGTCATATGCATT-CCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAAC------------------------------------------GGTGGGGAC ccagtgttagcctgccttccatgattcaattattttcgtaccttttctagGACTGTTCTTTCACTGTGTGCATGTCATATGCATTCCCACACACCAGACAAGCTAAGCTTCATCCTGGACCTTATGAATGGTATAATAGTTTAGGGGATGGCCTTTTTTTCTTTGACACTAGGTGGGGAA Alignment from Exonerate_protein2genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTC-CACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC ccagtgttagcctgccttccatgattcaattattttcgtaccttttctagGACTGTTCTTTCACTGTGTGCATGTCATATGCATTCCCACACACCAGACAAGCTAAGCTTCATCCTGGACCTTATGAATGgtataatagtttaggggatggcctttttttctttgacactagGTGGGGAA Alignment from Exonerate_coding2genome GACTGCCCCTTCATCGTGTGCATGTCATATGCATTC-CACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC ccagtgttagcctgccttccatgattcaattattttcgtaccttttctagGACTGTTCTTTCACTGTGTGCATGTCATATGCATTCCCACACACCAGACAAGCTAAGCTTCATCCTGGACCTTATGAATGgtataatagtttaggggatggcctttttttctttgacactagGTGGGGAA Alignment from GeneWise GACTGCCCCTTCATCGTGTGCATGTCATATGCA-TTCCACACACCAGACAAGCTCAGCTTCATCCTGGACCTCATGAACG GTGGGGAC ccagtgttagcctgccttccatgattcaattattttcgtaccttttctagGACTGTTCTTTCACTGTGTGCATGTCATATGCATTCCCACACACCAGACAAGCTAAGCTTCATCCTGGACCTTATGAATGgtataatagtttaggggatggcctttttttctttgacactagGTGGGGAA #### Adrbk1_ID489_6 --> 1 - 0 Original Alignment tGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTT-GAGCTCAACATCCAC agtctggtgcctcaatgaattactagagtccatgcttctctctgtgacagtGATAAGTTCACACATTTCTGTCAGTGGAAGAATATTCGAGCTCAACATCCATgtgacaggctgtacttcatgaatgcaactctaagtggaaattcaagtggc Alignment from CESAR tGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTT-GAGCTCAACATCCAC agtctggtgcctcaatgaattactagagtccatgcttctctctgtgacagtGATAAGTTCACACATTTCTGTCAGTGGAAGAATATTCGAGCTCAACATCCATgtgacaggctgtacttcatgaatgcaactctaagtggaaattcaagtggc Alignment from Spaln_aa2Genome TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTT-GAGCTCAACATCCAC agtctggtgcctcaatgaattactagagtccatgcttctctctgtgacagTGATAAGTTCACACATTTCTGTCAGTGGAAGAATATTcGAGCTCAACATCCATgtgacaggctgtacttcatgaatgcaactctaagtggaaattcaagtggc Alignment from Spaln_nt2Genome TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTT-GAGCTCAACATCCAC agtctggtgcctcaatgaattactagagtccatgcttctctctgtgacagTGATAAGTTCACACATTTCTGTCAGTGGAAGAATATTCGAGCTCAACATCCATgtgacaggctgtacttcatgaatgcaactctaagtggaaattcaagtggc Alignment from Pairagon TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTT-GAGCTCAACATCCAC agtctggtgcctcaatgaattactagagtccatgcttctctctgtgacagTGATAAGTTCACACATTTCTGTCAGTGGAAGAATATTCGAGCTCAACATCCATgtgacaggctgtacttcatgaatgcaactctaagtggaaattcaagtggc Alignment from Exonerate_protein2genome TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTT-GAGCTCAACATCCAC agtctggtgcctcaatgaattactagagtccatgcttctctctgtgacagTGATAAGTTCACACATTTCTGTCAGTGGAAGAATATTCGAGCTCAACATCCATgtgacaggctgtacttcatgaatgcaactctaagtggaaattcaagtggc Alignment from Exonerate_coding2genome TGACAAGTTCACACGGTTCTGCCAGTGGAAGAATGTT-GAGCTCAACATCCAC agtctggtgcctcaatgaattactagagtccatgcttctctctgtgacagTGATAAGTTCACACATTTCTGTCAGTGGAAGAATATTCGAGCTCAACATCCATgtgacaggctgtacttcatgaatgcaactctaagtggaaattcaagtggc Alignment from GeneWise TGACAAGTTCACACGGTTCTGCCAGTGGAAGAAT-GTTGAGCTCAACATCCAC agtctggtgcctcaatgaattactagagtccatgcttctctctgtgacagTGATAAGTTCACACATTTCTGTCAGTGGAAGAATATTCGAGCTCAACATCCATgtgacaggctgtacttcatgaatgcaactctaagtggaaattcaagtggc #### Adrbk1_ID490_5 --> 0 - 2 Original Alignment CCATACATTGAGGAGATTTGTCAG-AACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGag aggctgaggcttgccagattgattcaccgattctctcctgcctgttctagCCTTACATTGAGGAGATTTGTCAGCAAACTCCGAAGGGATTTATTCCAAAAGTTTATAGAGaggtgaggatgaagttgacttctctgcccctgcagccaagggtgttggaaaa Alignment from CESAR CCATACATTGAGGAGATTTGTCAG-AACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGag aggctgaggcttgccagattgattcaccgattctctcctgcctgttctagCCTTACATTGAGGAGATTTGTCAGCAAACTCCGAAGGGATTTATTCCAAAAGTTTATAGAGaggtgaggatgaagttgacttctctgcccctgcagccaagggtgttggaaaa Alignment from Spaln_aa2Genome CCATACATTGAGGAGATTTGTCAG-AACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG aggctgaggcttgccagattgattcaccgattctctcctgcctgttctagCCTTACATTGAGGAGATTTGTCAGcAAACTCCGAAGGGATTTATTCCAAAAGTTTATAGAGAGgtgaggatgaagttgacttctctgcccctgcagccaagggtgttggaaaa Alignment from Spaln_nt2Genome CCATACATTGAGGAGATTTGTCAG-AACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG aggctgaggcttgccagattgattcaccgattctctcctgcctgttctagCCTTACATTGAGGAGATTTGTCAGCAAACTCCGAAGGGATTTATTCCAAAAGTTTATAGAGAGgtgaggatgaagttgacttctctgcccctgcagccaagggtgttggaaaa Alignment from Pairagon CCATACATTGAGGAGATTTGTCAG-AACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG aggctgaggcttgccagattgattcaccgattctctcctgcctgttctagCCTTACATTGAGGAGATTTGTCAGCAAACTCCGAAGGGATTTATTCCAAAAGTTTATAGAGAGgtgaggatgaagttgacttctctgcccctgcagccaagggtgttggaaaa Alignment from Exonerate_protein2genome CCATACATTGAGGAGATTTGTCAG-AACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG aggctgaggcttgccagattgattcaccgattctctcctgcctgttctagCCTTACATTGAGGAGATTTGTCAGCAAACTCCGAAGGGATTTATTCCAAAAGTTTATAGAGAGgtgaggatgaagttgacttctctgcccctgcagccaagggtgttggaaaa Alignment from Exonerate_coding2genome ATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAGCCATACATTGAGGAGATTTGTCAG-AACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG AGGCTGAGGCTTGCCAGATTGATTCACCGATTCTCTCCTGCCTGTTCTAGCCTTACATTGAGGAGATTTGTCAGCAAACTCCGAAGGGATTTATTCCAAAAGTTTATAGAGAGgtgaggatgaagttgacttctctgcccctgcagccaagggtgttggaaaa Alignment from GeneWise CCATACATTGAGGAGATTTGTCAG-AACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG aggctgaggcttgccagattgattcaccgattctctcctgcctgttctagCCTTACATTGAGGAGATTTGTCAGCAAACTCCGAAGGGATTTATTCCAAAAGTTTATAGAGAGgtgaggatgaagttgacttctctgcccctgcagccaagggtgttggaaaa #### Adrbk1_ID491_4 --> 0 - 0 Original Alignment CCCTTTTCAAAGAAT-GCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG atttactattccgttttctttgttcatagttttgtttttttttcccacagCCCTTTTCACAAAACCGCTACAGAGCATGTGCAGGCCCACCTTGTGAAAAAGCAGGTCCCTCCAGATCTGTTTCAAgtaagcttggggtggtcatcatggtttcagacattcctaacacctcactc Alignment from CESAR CCCTTTTCA-AAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG atttactattccgttttctttgttcatagttttgtttttttttcccacagCCCTTTTCACAAAACCGCTACAGAGCATGTGCAGGCCCACCTTGTGAAAAAGCAGGTCCCTCCAGATCTGTTTCAAgtaagcttggggtggtcatcatggtttcagacattcctaacacctcactc Alignment from Spaln_aa2Genome CCCTTTTCAAAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG atttactattccgttttctttgttcatagttttgtttttttttcccacAGCCCTTTTCACAAAACCGCTACAGAGCATGTGCAGGCCCACCTTGTGAAAAAGCAGGTCCCTCCAGATCTGTTTCAAgtaagcttggggtggtcatcatggtttcagacattcctaacacctcactc Alignment from Spaln_nt2Genome CCCTTTTCAAAGAAT-GCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG atttactattccgttttctttgttcatagttttgtttttttttcccacagCCCTTTTCACAAAACCGCTACAGAGCATGTGCAGGCCCACCTTGTGAAAAAGCAGGTCCCTCCAGATCTGTTTCAAgtaagcttggggtggtcatcatggtttcagacattcctaacacctcactc Alignment from Pairagon CCCTTTTCA-AAGAATGCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG atttactattccgttttctttgttcatagttttgtttttttttcccacagCCCTTTTCACAAAACCGCTACAGAGCATGTGCAGGCCCACCTTGTGAAAAAGCAGGTCCCTCCAGATCTGTTTCAAgtaagcttggggtggtcatcatggtttcagacattcctaacacctcactc Alignment from Exonerate_protein2genome CCCTTTTCAAAGAAT-GCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG atttactattccgttttctttgttcatagttttgtttttttttcccacagCCCTTTTCACAAAACCGCTACAGAGCATGTGCAGGCCCACCTTGTGAAAAAGCAGGTCCCTCCAGATCTGTTTCAAgtaagcttggggtggtcatcatggtttcagacattcctaacacctcactc Alignment from Exonerate_coding2genome atttactattccgttttctttgttcatagttttgtttttttttcccacagcccttttcacaaaaccgctacagagcatgtgcaggcccaccttgtgaaaaagcaggtccctccagatctgtttcaagtaagcttggggtggtcatcatggtttcagacattcctaacacctcactc Alignment from GeneWise CCCTTTTCAAAGAAT-GCTACGGAGCATGTCCAGGGCCACCTGGTGAAGAAGCAGGTGCCTCCAGATCTCTTCCAG atttactattccgttttctttgttcatagttttgtttttttttcccacagCCCTTTTCACAAAACCGCTACAGAGCATGTGCAGGCCCACCTTGTGAAAAAGCAGGTCCCTCCAGATCTGTTTCAAgtaagcttggggtggtcatcatggtttcagacattcctaacacctcactc #### Aip_ID330_5 --> 0 - 1 Original Alignment GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGC-TCCTCCATCCTCAACAAGTATGATg ctgcagatggctgcagctgggacttaccccatgatctgtttatttctcagGAGCAGCCTGGTTCATCTGACTGGGTCCAGTTAGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTGGCTCCAGAGTATTATGAAGTGTTGGATCACTGCCTTGTCCATTCTCAACAAGTATGATggtacgtatcatgcccatttacagcccagacttcccacaagctgcagaggg Alignment from CESAR GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGC-TCCTCCATCCTCAACAAGTATGATg ctgcagatggctgcagctgggacttaccccatgatctgtttatttctcagGAGCAGCCTGGTTCATCTGACTGGGTCCAGTTAGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTGGCTCCAGAGTATTATGAAGTGTTGGATCACTGCCTTGTCCATTCTCAACAAGTATGATggtacgtatcatgcccatttacagcccagacttcccacaagctgcagaggg Alignment from Spaln_aa2Genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGC-TCCTCCATCCTCAACAAGTATGATG ctgcagatggctgcagctgggacttaccccatgatctgtttatttctcagGAGCAGCCTGGTTCATCTGACTGGGTCCAGTTAGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTGGCTCCAGAGTATTATGAAGTGTTGGATCACTGCcTTGTCCATTCTCAACAAGTATGATGgtacgtatcatgcccatttacagcccagacttcccacaagctgcagaggg Alignment from Spaln_nt2Genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGC-TCCTCCATCCTCAACAAGTATGATG ctgcagatggctgcagctgggacttaccccatgatctgtttatttctcagGAGCAGCCTGGTTCATCTGACTGGGTCCAGTTAGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTGGCTCCAGAGTATTATGAAGTGTTGGATCACTGCCTTGTCCATTCTCAACAAGTATGATGgtacgtatcatgcccatttacagcccagacttcccacaagctgcagaggg Alignment from Pairagon GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTG-CTCCTCCATCCTCAACAAGTATGATG ctgcagatggctgcagctgggacttaccccatgatctgtttatttctcagGAGCAGCCTGGTTCATCTGACTGGGTCCAGTTAGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTGGCTCCAGAGTATTATGAAGTGTTGGATCACTGCCTTGTCCATTCTCAACAAGTATGATGgtacgtatcatgcccatttacagcccagacttcccacaagctgcagaggg Alignment from Exonerate_protein2genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGC-TCCTCCATCCTCAACAAGTATGATG ctgcagatggctgcagctgggacttaccccatgatctgtttatttctcagGAGCAGCCTGGTTCATCTGACTGGGTCCAGTTAGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTGGCTCCAGAGTATTATGAAGTGTTGGATCACTGCCTTGTCCATTCTCAACAAGTATGATGgtacgtatcatgcccatttacagcccagacttcccacaagctgcagaggg Alignment from Exonerate_coding2genome GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGC-TCCTCCATCCTCAACAAGTATGATG ctgcagatggctgcagctgggacttaccccatgatctgtttatttctcagGAGCAGCCTGGTTCATCTGACTGGGTCCAGTTAGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTGGCTCCAGAGTATTATGAAGTGTTGGATCACTGCCTTGTCCATTCTCAACAAGTATGATGgtacgtatcatgcccatttacagcccagacttcccacaagctgcagaggg Alignment from GeneWise GAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGCTACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGC-TCCTCCATCCTCAACAAGTATGATG ctgcagatggctgcagctgggacttaccccatgatctgtttatttctcagGAGCAGCCTGGTTCATCTGACTGGGTCCAGTTAGACCTGCAGATCACACCACTGCTACCCAATTATTGCCAGTGCAAGCTGGTGGCTCCAGAGTATTATGAAGTGTTGGATCACTGCCTTGTCCATTCTCAACAAGTATGATGgtacgtatcatgcccatttacagcccagacttcccacaagctgcagaggg #### Aldh3b1_ID204_3 --> 0 - 1 Original Alignment GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTG-GGGGCCATAGCTGCAg gaccatattgcttgcctatacacaaggaccatcgccgcacccccgtccagGCTACACAGCTGGATGCCGCATTCATCAGGAAGGAGCCCTTTGGTCTGGTGCTAATCATTGTGCCTTGGAATTATCCCATTAACTTGACACTTGTGCCACTGGTGCGGGGCTGTAGCTGCAggtaagaagtttttaaacttctgacaggcccccacatcagggtgactgctg Alignment from CESAR GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTG-GGGGCCATAGCTGCAg gaccatattgcttgcctatacacaaggaccatcgccgcacccccgtccagGCTACACAGCTGGATGCCGCATTCATCAGGAAGGAGCCCTTTGGTCTGGTGCTAATCATTGTGCCTTGGAATTATCCCATTAACTTGACACTTGTGCCACTGGTGCGGGGCTGTAGCTGCAggtaagaagtttttaaacttctgacaggcccccacatcagggtgactgctg Alignment from Spaln_aa2Genome GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTGGGGGCCATAGCTGCAG gaccatattgcttgcctatacacaaggaccatcgccgcacccccgtccagGCTACACAGCTGGATGCCGCATTCATCAGGAAGGAGCCCTTTGGTCTGGTGCTAATCATTGTGCCTTGGAATTATCCCATTAACTTGACACTTGTGCCACTGGTGCGGGGC---TGTAGCTgcaggtaagaagtttttaaacttctgacaggcccccacatcagggtgactgctg Alignment from Spaln_nt2Genome GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTG-GGGGCCATAGCTGCAG gaccatattgcttgcctatacacaaggaccatcgccgcacccccgtccagGCTACACAGCTGGATGCCGCATTCATCAGGAAGGAGCCCTTTGGTCTGGTGCTAATCATTGTGCCTTGGAATTATCCCATTAACTTGACACTTGTGCCACTGGTGCGGGGCTGTAGCTGCAGgtaagaagtttttaaacttctgacaggcccccacatcagggtgactgctg Alignment from Pairagon GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTG-GGGGCCATAGCTGCAG gaccatattgcttgcctatacacaaggaccatcgccgcacccccgtccagGCTACACAGCTGGATGCCGCATTCATCAGGAAGGAGCCCTTTGGTCTGGTGCTAATCATTGTGCCTTGGAATTATCCCATTAACTTGACACTTGTGCCACTGGTGCGGGGCTGTAGCTGCAGgtaagaagtttttaaacttctgacaggcccccacatcagggtgactgctg Alignment from Exonerate_protein2genome GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTG-GGGGCCATAGCTGCAG gaccatattgcttgcctatacacaaggaccatcgccgcacccccgtccagGCTACACAGCTGGATGCCGCATTCATCAGGAAGGAGCCCTTTGGTCTGGTGCTAATCATTGTGCCTTGGAATTATCCCATTAACTTGACACTTGTGCCACTGGTGCGGGGCTGTAGCTGCAGgtaagaagtttttaaacttctgacaggcccccacatcagggtgactgctg Alignment from Exonerate_coding2genome GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTGGTG-GGGGCCATAGCTGCAG gaccatattgcttgcctatacacaaggaccatcgccgcacccccgtccagGCTACACAGCTGGATGCCGCATTCATCAGGAAGGAGCCCTTTGGTCTGGTGCTAATCATTGTGCCTTGGAATTATCCCATTAACTTGACACTTGTGCCACTGGTGCGGGGCTGTAGCTGCAGgtaagaagtttttaaacttctgacaggcccccacatcagggtgactgctg Alignment from GeneWise GCTACACAGCTGGACTCAGCCTTCATCCGGAAGGAGCCCTTCGGTCTGGTGCTTATCATCGTGCCCTGGAATTATCCCATTAACCTGACACTCGTGCCGCTG gaccatattgcttgcctatacacaaggaccatcgccgcacccccgtccagGCTACACAGCTGGATGCCGCATTCATCAGGAAGGAGCCCTTTGGTCTGGTGCTAATCATTGTGCCTTGGAATTATCCCATTAACTTGACACTTGTGCCACTGgtgcggggctgtagctgcaggtaagaagtttttaaacttctgacaggcccccacatcagggtgactgctg #### Aldh3b2_ID237_3 --> 0 - 0 Original Alignment TCAGGCTTCGAGTCAGACATGAGTGAG-ATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG gtgatgattaggttaagcctagcctcaacatcttctgttgtaatttttagTCAGGCTTTGAGTCAGACATGAGTGAGCATCTTTCTGTGTGAGAATGAGGTGGATTTGGCCCTGAAGAATCTGCAGACGTGGATGAAGGATGAACCTGTGCCCACAAATTTAgtcagccctgtcagtgtactgtagtgtcagtgagtggctagccccatatc Alignment from CESAR TCAGGCTTCGAGTCAGACATGAGTGAG-ATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG gtgatgattaggttaagcctagcctcaacatcttctgttgtaatttttagTCAGGCTTTGAGTCAGACATGAGTGAGCATCTTTCTGTGTGAGAATGAGGTGGATTTGGCCCTGAAGAATCTGCAGACGTGGATGAAGGATGAACCTGTGCCCACAAATTTAgtcagccctgtcagtgtactgtagtgtcagtgagtggctagccccatatc Alignment from Spaln_aa2Genome TCAGGCTTCGAGTCAGACATGAGTGAG-ATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG gtgatgattaggttaagcctagcctcaacatcttctgttgtaatttttagTCAGGCTTTGAGTCAGACATGAGTGAGcATCTTTCTGTGTGAGAATGAGGTGGATTTGGCCCTGAAGAATCTGCAGACGTGGATGAAGGATGAACCTGTGCCCACAAATTTAgtcagccctgtcagtgtactgtagtgtcagtgagtggctagccccatatc Alignment from Spaln_nt2Genome TCAGGCTTCGAGTCAGACATGAGTGAG-ATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG gtgatgattaggttaagcctagcctcaacatcttctgttgtaatttttagTCAGGCTTTGAGTCAGACATGAGTGAGCATCTTTCTGTGTGAGAATGAGGTGGATTTGGCCCTGAAGAATCTGCAGACGTGGATGAAGGATGAACCTGTGCCCACAAATTTAgtcagccctgtcagtgtactgtagtgtcagtgagtggctagccccatatc Alignment from Pairagon TCAGGCTTCGAGTCAGACATGAGTGAG-ATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG gtgatgattaggttaagcctagcctcaacatcttctgttgtaatttttagTCAGGCTTTGAGTCAGACATGAGTGAGCATCTTTCTGTGTGAGAATGAGGTGGATTTGGCCCTGAAGAATCTGCAGACGTGGATGAAGGATGAACCTGTGCCCACAAATTTAgtcagccctgtcagtgtactgtagtgtcagtgagtggctagccccatatc Alignment from Exonerate_protein2genome TCAGGCTTCGAGTCAGACATGAGTGAG-ATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG gtgatgattaggttaagcctagcctcaacatcttctgttgtaatttttagTCAGGCTTTGAGTCAGACATGAGTGAGCATCTTTCTGTGTGAGAATGAGGTGGATTTGGCCCTGAAGAATCTGCAGACGTGGATGAAGGATGAACCTGTGCCCACAAATTTAgtcagccctgtcagtgtactgtagtgtcagtgagtggctagccccatatc Alignment from Exonerate_coding2genome TCAGGCTTCGAGTCAGACATGAGTGAG-ATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG gtgatgattaggttaagcctagcctcaacatcttctgttgtaatttttagTCAGGCTTTGAGTCAGACATGAGTGAGCATCTTTCTGTGTGAGAATGAGGTGGATTTGGCCCTGAAGAATCTGCAGACGTGGATGAAGGATGAACCTGTGCCCACAAATTTAgtcagccctgtcagtgtactgtagtgtcagtgagtggctagccccatatc Alignment from GeneWise TCAGGCTTCGAGTCAGACATGAGTGAG-ATCATCCTGTGCGAGAATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG gtgatgattaggttaagcctagcctcaacatcttctgttgtaatttttagTCAGGCTTTGAGTCAGACATGAGTGAGCATCTTTCTGTGTGAGAATGAGGTGGATTTGGCCCTGAAGAATCTGCAGACGTGGATGAAGGATGAACCTGTGCCCACAAATTTAgtcagccctgtcagtgtactgtagtgtcagtgagtggctagccccatatc #### Aldh3b2_ID239_5 --> 2 - 0 Original Alignment gaAACTGTGTGGTGCTGAAGCCATCA-GAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG AGCTGCTTTGCTGTGATGTTG ccagaagtatacacaccctgttctcactttttctgtaatatcttgtacaggaAACTGTGTGGTATTGAGGCCATCTCGAAATCAGTAAGAACACAGAA---ATGCAGGCAGAGCTACTG---CAGCATCTGGATCAGgtataaatacctcccctgtttatatccagAGCTGTTTTGCTGTGATGCTG Alignment from CESAR gaAACTGTGTGGTGCTGAAGCCATCA-GAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG AGCTGCTTTGCTGTGATGTTG ccagaagtatacacaccctgttctcactttttctgtaatatcttgtacaggaAACTGTGTGGTATTGAGGCCATCTCGAAATCAGTAAGAACACAGAA---ATGCAGGCAGAGCTACTG---CAGCATCTGGATCAGgtatgcagtatcctttctttcatgtttagAGCTGTTTTGCTGTGATGCTG Alignment from Spaln_aa2Genome GCCCCAGTATCTGGACCAG AGCTGCTTTGCTGTGATGTTG CCAGAAGTATACACACCCTgttctcactttttctgtaatatcttgtacaggaaactgtgtggtattgaggccatctcgaaatcagtaagaacacagaaatgcaggcagagctactgcagcatctggatcaggtataaatacctcccctgtttatatccagAGCTGTTTTGCTGTGATGCTG Alignment from Spaln_nt2Genome GAAACTGTGTGGTGCTGAAGCCATCA-GAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGACCAG-------------------------------AGCTGCTTTGCTGTGATGT ccagaagtatacacaccctgttctcactttttctgtaatatcttgtacagGAAACTGTGTGGTATTGAGGCCATCTCGAAATCAGTAAGAACACAGAAA---TGCAGGCAGAGCTACTG---CAGCATCTGGATCAGGTATAAATACCTCCCCTGTTTATATCCAGAG--CTGTTTTGCTGTGATGC Alignment from Pairagon GAAACTGTGTGGTGCTGAAGCCATC-AGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTGCTGCCCCAGTATCTGGA-----------------------------CCAGAGCTGCTTTGCTGTGATGTTG ccagaagtatacacaccctgttctcactttttctgtaatatcttgtacagGAAACTGTGTGGTATTGAGGCCATCTCGAAATCAGTAAGAACACAGAAA---TGCAGGCAGAGCTACTG---CAGCATCTGGATCAGGTATAAATACCTCCCCTGTTTATATCCAGAGCTGTTTTGCTGTGATGCTG Alignment from Exonerate_protein2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTG-----CTGCCCCAGTATCTGGACCAGAGCTGCTTTGCTGTGATGTTG ccagaagtatacacaccctgttctcactttttctgtaatatcttgtacaggaaactgtgtggtattgagGCCATCTCGAAATCAGTAAGAACACAGAAATGCAGGCAGAGCTACTGCAGCATCTGGATCAGGTATAAATACCTCCCCTGTTTATATCCAGAGCTGTTTTGCTGTGATGCTG Alignment from Exonerate_coding2genome GAAACTGTGTGGTGCTGAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGTGCTGGCAGAGCTG-----CTGCCCCAGTATCTGGACCAGAGCTGCTTTGCTGTGATGTTG ccagaagtatacacaccctgttctcactttttctgtaatatcttgtacaggaaactgtgtggtattgagGCCATCTCGAAATCAGTAAGAACACAGAAATGCAGGCAGAGCTACTGCAGCATCTGGATCAGGTATAAATACCTCCCCTGTTTATATCCAGAGCTGTTTTGCTGTGATGCTG Alignment from GeneWise CCAG---TATCTGGACCAG AGCTGCTTTGCTGTGATGTTG CCAGAAGTATACACACCCTgttctcactttttctgtaatatcttgtacaggaaactgtgtggtattgaggccatctcgaaatcagtaagaacacagaaatgcaggcagagctactgcagcatctggatcaggtataaatacctcccctgtttatatccagAGCTGTTTTGCTGTGATGCTG #### Ankrd13d_ID460_13 --> 2 - 0 Original Alignment gaAGCCCTTTTCCATGTGAGGTGGACCCCACT-GTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG cccatctgactttctgataagcctttgtcgggctttcccctgcttcccaggaGGCCTTTATCCATGTGAGGTAGACTCCACTCGTGTTTGAGGCATCTGAGGGATACAGTGTCTTGGGTGCTGAGCGCAGTGAGCCCCTCCAGGATGAAGATGATGAGCTTCTGCAGTTTGCTATCCAGCAAAGCCTGCTTGAGGCAGGCATACAGGCAGAGCAGgtatgttgtgaaatagctagtatgacccttagtgcctcaggcccaaggtg Alignment from CESAR gaAGCCCTTTTCCATGTGAGGTGGACCCCACT-GTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG cccatctgactttctgataagcctttgtcgggctttcccctgcttcccaggaGGCCTTTATCCATGTGAGGTAGACTCCACTCGTGTTTGAGGCATCTGAGGGATACAGTGTCTTGGGTGCTGAGCGCAGTGAGCCCCTCCAGGATGAAGATGATGAGCTTCTGCAGTTTGCTATCCAGCAAAGCCTGCTTGAGGCAGGCATACAGGCAGAGCAGgtatgttgtgaaatagctagtatgacccttagtgcctcaggcccaaggtg Alignment from Spaln_aa2Genome GAAGCCCTTTTCCATGTGAGGTGGACCCCACT-GTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG cccatctgactttctgataagcctttgtcgggctttcccctgcttcccagGAGGCCTTTATCCATGTGAGGTAGACTCCACTcGTGTTTGAGGCATCTGAGGGATACAGTGTCTTGGGTGCTGAGCGCAGTGAGCCCCTCCAGGATGAAGATGATGAGCTTCTGCAGTTTGCTATCCAGCAAAGCCTGCTTGAGGCAGGCATACAGGCAGAGCAGgtatgttgtgaaatagctagtatgacccttagtgcctcaggcccaaggtg Alignment from Spaln_nt2Genome GAAGCCCTTTTCCATGTGAGGTGGACCCCACT-GTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG cccatctgactttctgataagcctttgtcgggctttcccctgcttcccagGAGGCCTTTATCCATGTGAGGTAGACTCCACTCGTGTTTGAGGCATCTGAGGGATACAGTGTCTTGGGTGCTGAGCGCAGTGAGCCCCTCCAGGATGAAGATGATGAGCTTCTGCAGTTTGCTATCCAGCAAAGCCTGCTTGAGGCAGGCATACAGGCAGAGCAGgtatgttgtgaaatagctagtatgacccttagtgcctcaggcccaaggtg Alignment from Pairagon GAAGCCCTTTTCCATGTGAGGTGGACCCCACT-GTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG cccatctgactttctgataagcctttgtcgggctttcccctgcttcccagGAGGCCTTTATCCATGTGAGGTAGACTCCACTCGTGTTTGAGGCATCTGAGGGATACAGTGTCTTGGGTGCTGAGCGCAGTGAGCCCCTCCAGGATGAAGATGATGAGCTTCTGCAGTTTGCTATCCAGCAAAGCCTGCTTGAGGCAGGCATACAGGCAGAGCAGgtatgttgtgaaatagctagtatgacccttagtgcctcaggcccaaggtg Alignment from Exonerate_protein2genome cccatctgactttctgataagcctttgtcgggctttcccctgcttcccaggaggcctttatccatgtgaggtagactccactcgtgtttgaggcatctgagggatacagtgtcttgggtgctgagcgcagtgagcccctccaggatgaagatgatgagcttctgcagtttgctatccagcaaagcctgcttgaggcaggcatacaggcagagcaggtatgttgtgaaatagctagtatgacccttagtgcctcaggcccaaggtg Alignment from Exonerate_coding2genome GAAGCCCTTTTCCATGTGAGGTGGACCCCACT---GTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG cccatctgactttctgataagcctttgtcgggctttcccctgcttcccagGAGGCCTTTATCCATGTGAGGTAGACTCCA--CTCGTGTTTGAGGCATCTGAGGGATACAGTGTCTTGGGTGCTGAGCGCAGTGAGCCCCTCCAGGATGAAGATGATGAGCTTCTGCAGTTTGCTATCCAGCAAAGCCTGCTTGAGGCAGGCATACAGGCAGAGCAGgtatgttgtgaaatagctagtatgacccttagtgcctcaggcccaaggtg Alignment from GeneWise GAAGCCCTTTTCCATGTGAGGTG-GACCCCACTGTATTCGAGGTGCCCGAGGGATACAGTGTGCTGGGTGCTGAGCGCAGCGAGCCCCTTCGGGATGAGGATGACGACCTGCTGCAGTTTGCCATCCAGCAGAGCCTGCTTGAGGCAGGCACAGAGGCAGAGCAG cccatctgactttctgataagcctttgtcgggctttcccctgcttcccagGAGGCCTTTATCCATGTGAGGTAGACTCCACTCGTGTTTGAGGCATCTGAGGGATACAGTGTCTTGGGTGCTGAGCGCAGTGAGCCCCTCCAGGATGAAGATGATGAGCTTCTGCAGTTTGCTATCCAGCAAAGCCTGCTTGAGGCAGGCATACAGGCAGAGCAGgtatgttgtgaaatagctagtatgacccttagtgcctcaggcccaaggtg #### Ankrd13d_ID461_12 --> 2 - 1 Original Alignment agATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGC-GTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAg aggggttactgggtcatattggcaacctgttctgtgaactgtcgtgatagaaATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCAGTGTGTCGTCCCCAACTCCAGTCTAGCAATTTCTGCTTCAggtaagtctatagccatgtaggatattcccatctgactttctgataagcct Alignment from CESAR agATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGC-GTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAg aggggttactgggtcatattggcaacctgttctgtgaactgtcgtgatagaaATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCAGTGTGTCGTCCCCAACTCCAGTCTAGCAATTTCTGCTTCAggtaagtctatagccatgtaggatattcccatctgactttctgataagcct Alignment from Spaln_aa2Genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGCGTCCCC-AACTCCAGTTCTGCCATTTCTGCTTCAG aggggttactgggtcatattggcaacctgttctgtgaactgtcgtgatagAAATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCAGTGTGTCGTCCCcAACTCCAGTCTAGCAATTTCTGCTTCAGgtaagtctatagccatgtaggatattcccatctgactttctgataagcct Alignment from Spaln_nt2Genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTG-CGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG aggggttactgggtcatattggcaacctgttctgtgaactgtcgtgatagAAATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCAGTGTGTCGTCCCCAACTCCAGTCTAGCAATTTCTGCTTCAGgtaagtctatagccatgtaggatattcccatctgactttctgataagcct Alignment from Pairagon AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTG-CGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG aggggttactgggtcatattggcaacctgttctgtgaactgtcgtgatagAAATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCAGTGTGTCGTCCCCAACTCCAGTCTAGCAATTTCTGCTTCAGgtaagtctatagccatgtaggatattcccatctgactttctgataagcct Alignment from Exonerate_protein2genome aggggttactgggtcatattggcaacctgttctgtgaactgtcgtgatagaaattcccctctttcatgtgcacaatgcccgcaccacctttagtaacctttgtggctgtgatgaacctgtgagctcagtgtgtcgtccccaactccagtctagcaatttctgcttcaggtaagtctatagccatgtaggatattcccatctgactttctgataagcct Alignment from Exonerate_coding2genome aggggttactgggtcatattggcaacctgttctgtgaactgtcgtgatagaaattcccctctttcatgtgcacaatgcccgcaccacctttagtaacctttgtggctgtgatgaacctgtgagctcagtgtgtcgtccccaactccagtctagcaatttctgcttcaggtaagtctatagccatgtaggatattcccatctgactttctgataagcct Alignment from GeneWise AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCGGTGTGC-GTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG aggggttactgggtcatattggcaacctgttctgtgaactgtcgtgatagAAATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCAGTGTGTCGTCCCCAACTCCAGTCTAGCAATTTCTGCTTCAGgtaagtctatagccatgtaggatattcccatctgactttctgataagcct #### Ankrd13d_ID464_9 --> 2 - 0 Original Alignment ggGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCC-CAGCAGCACTCCTCCCACACTTTG actggcttacttagacatacaagggtcttgaacttgctgtgtgttcccagggGGAAAGACTCCATTCCAATCCTTCTTGGGTATGGCCCCAGCAACATTCTTCACACACTTTGgtgagattgttgaaggtatgggttggtaaggctgggtaagtggggtttcc Alignment from CESAR ggGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCC-CAGCAGCACTCCTCCCACACTTTG actggcttacttagacatacaagggtcttgaacttgctgtgtgttcccagggGGAAAGACTCCATTCCAATCCTTCTTGGGTATGGCCCCAGCAACATTCTTCACACACTTTGgtgagattgttgaaggtatgggttggtaaggctgggtaagtggggtttcc Alignment from Spaln_aa2Genome GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCC-CAGCAGCACTCCTCCCACACTTTG actggcttacttagacatacaagggtcttgaacttgctgtgtgttcccagGGGGAAAGACTCCATTCCAATCCTTCTTGGGTATGGCCcCAGCAACATTCTTCACACACTTTGgtgagattgttgaaggtatgggttggtaaggctgggtaagtggggtttcc Alignment from Spaln_nt2Genome GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCC-AGCAGCACTCCTCCCACACTTTG actggcttacttagacatacaagggtcttgaacttgctgtgtgttcccagGGGGAAAGACTCCATTCCAATCCTTCTTGGGTATGGCCCCAGCAACATTCTTCACACACTTTGgtgagattgttgaaggtatgggttggtaaggctgggtaagtggggtttcc Alignment from Pairagon GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGG-CCCAGCAGCACTCCTCCCACACTTTG actggcttacttagacatacaagggtcttgaacttgctgtgtgttcccagGGGGAAAGACTCCATTCCAATCCTTCTTGGGTATGGCCCCAGCAACATTCTTCACACACTTTGgtgagattgttgaaggtatgggttggtaaggctgggtaagtggggtttcc Alignment from Exonerate_protein2genome GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCC-CAGCAGCACTCCTCCCACACTTTG actggcttacttagacatacaagggtcttgaacttgctgtgtgttcccagGGGGAAAGACTCCATTCCAATCCTTCTTGGGTATGGCCCCAGCAACATTCTTCACACACTTTGgtgagattgttgaaggtatgggttggtaaggctgggtaagtggggtttcc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATG-GCCCAGCAGCACTCCTCCCACACTTTG actggcttacttagacatacaagggtcttgaacttgctgtgtgttcccagGGGGAAAGACTCCATTCCAATCCTTCTTGGGTATGGCCCCAGCAACATTCTTCACACACTTTGgtgagattgttgaaggtatgggttggtaaggctgggtaagtggggtttcc #### Anxa1_ID4766_4 --> 0 - 0 Original Alignment CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCA-GATGAACTCCGTGGTGCCATGAAG aggccaggagaatggtacatacctaagtctgagtatgctctctccctcagCCCTTAGATGAAGTATTGAGAAAAGCCCTCACAGGCCATCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCACAATTT---GCACGATGAACTACATGGTGCCATGAAGgtaagctgttctaacagacttgctcctataacaggttcaaggagcttttg Alignment from CESAR CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaatggtacatacctaagtctgagtatgctctctccctcagCCCTTAGATGAAGTATTGAGAAAAGCCCTCACAGGCCATCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCACAATTTGCA--CGATGAACTACATGGTGCCATGAAGgtaagctgttctaacagacttgctcctataacaggttcaaggagcttttg Alignment from Spaln_aa2Genome CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaatggtacatacctaagtctgagtatgctctctccctcagCCCTTAGATGAAGTATTGAGAAAAGCCCTCACAGGCCATCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCACAATTTGCAC--GATGAACTACATGGTGCCATGAAGgtaagctgttctaacagacttgctcctataacaggttcaaggagcttttg Alignment from Spaln_nt2Genome CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCA-GATGAACTCCGTGGTGCCATGAAG aggccaggagaatggtacatacctaagtctgagtatgctctctccctcagCCCTTAGATGAAGTATTGAGAAAAGCCCTCACAGGCCATCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCACAATT---TGCACGATGAACTACATGGTGCCATGAAGgtaagctgttctaacagacttgctcctataacaggttcaaggagcttttg Alignment from Pairagon CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCA-GATGAACTCCGTGGTGCCATGAAG aggccaggagaatggtacatacctaagtctgagtatgctctctccctcagCCCTTAGATGAAGTATTGAGAAAAGCCCTCACAGGCCATCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCACAATT---TGCACGATGAACTACATGGTGCCATGAAGgtaagctgttctaacagacttgctcctataacaggttcaaggagcttttg Alignment from Exonerate_protein2genome CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCA-GATGAACTCCGTGGTGCCATGAAG aggccaggagaatggtacatacctaagtctgagtatgctctctccctcagCCCTTAGATGAAGTATTGAGAAAAGCCCTCACAGGCCATCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCACAATTT---GCACGATGAACTACATGGTGCCATGAAGgtaagctgttctaacagacttgctcctataacaggttcaaggagcttttg Alignment from Exonerate_coding2genome CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCA-GATGAACTCCGTGGTGCCATGAAG aggccaggagaatggtacatacctaagtctgagtatgctctctccctcagCCCTTAGATGAAGTATTGAGAAAAGCCCTCACAGGCCATCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCACAATTT---GCACGATGAACTACATGGTGCCATGAAGgtaagctgttctaacagacttgctcctataacaggttcaaggagcttttg Alignment from GeneWise CCCTTGGATGAAGTCTTGAGAAAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaatggtacatacctaagtctgagtatgctctctccctcagCCCTTAGATGAAGTATTGAGAAAAGCCCTCACAGGCCATCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCACAATTTGCAC--GATGAACTACATGGTGCCATGAAGgtaagctgttctaacagacttgctcctataacaggttcaaggagcttttg #### B3gat3_ID2492_4 --> 0 - 0 Original Alignment ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCC-CTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG actcagaccaaccttttcagccaacactctggtgcttgttttgcttctagATGCGCTGGACTCGTGGTGTCTCAGTGTGGCCTGTTGGTCTGGTGGGTGGCCTACGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCAGGATTTGCGATTGCCCCTGCCCTTGCTATTGGCTAAACCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTTCTAAGTCACCTTGTAGATCCAACGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtgagagaacggtagtcagatcagaggaaggggggggttctgggctgagc Alignment from CESAR ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCC-CTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG actcagaccaaccttttcagccaacactctggtgcttgttttgcttctagATGCGCTGGACTCGTGGTGTCTCAGTGTGGCCTGTTGGTCTGGTGGGTGGCCTACGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCAGGATTTGCGATTGCCCCTGCCCTTGCTATTGGCTAAACCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTTCTAAGTCACCTTGTAGATCCAACGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtgagagaacggtagtcagatcagaggaaggggggggttctgggctgagc Alignment from Spaln_aa2Genome ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCC-CTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG actcagaccaaccttttcagccaacactctggtgcttgttttgcttctagATGCGCTGGACTCGTGGTGTCTCAGTGTGGCCTGTTGGTCTGGTGGGTGGCCTACGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCAGGATTTGCGATTGCCcCTGCCCTTGCTATTGGCTAAACCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTTCTAAGTCACCTTGTAGATCCAACGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtgagagaacggtagtcagatcagaggaaggggggggttctgggctgagc Alignment from Spaln_nt2Genome ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTG-CCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG actcagaccaaccttttcagccaacactctggtgcttgttttgcttctagATGCGCTGGACTCGTGGTGTCTCAGTGTGGCCTGTTGGTCTGGTGGGTGGCCTACGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCAGGATTTGCGATTGCCCCTGCCCTTGCTATTGGCTAAACCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTTCTAAGTCACCTTGTAGATCCAACGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtgagagaacggtagtcagatcagaggaaggggggggttctgggctgagc Alignment from Pairagon ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTG-CCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG actcagaccaaccttttcagccaacactctggtgcttgttttgcttctagATGCGCTGGACTCGTGGTGTCTCAGTGTGGCCTGTTGGTCTGGTGGGTGGCCTACGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCAGGATTTGCGATTGCCCCTGCCCTTGCTATTGGCTAAACCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTTCTAAGTCACCTTGTAGATCCAACGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtgagagaacggtagtcagatcagaggaaggggggggttctgggctgagc Alignment from Exonerate_protein2genome ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCC-CTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG actcagaccaaccttttcagccaacactctggtgcttgttttgcttctagATGCGCTGGACTCGTGGTGTCTCAGTGTGGCCTGTTGGTCTGGTGGGTGGCCTACGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCAGGATTTGCGATTGCCCCTGCCCTTGCTATTGGCTAAACCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTTCTAAGTCACCTTGTAGATCCAACGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtgagagaacggtagtcagatcagaggaaggggggggttctgggctgagc Alignment from Exonerate_coding2genome ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTTGCC-CTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG actcagaccaaccttttcagccaacactctggtgcttgttttgcttctagATGCGCTGGACTCGTGGTGTCTCAGTGTGGCCTGTTGGTCTGGTGGGTGGCCTACGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCAGGATTTGCGATTGCCCCTGCCCTTGCTATTGGCTAAACCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTTCTAAGTCACCTTGTAGATCCAACGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtgagagaacggtagtcagatcagaggaaggggggggttctgggctgagc Alignment from GeneWise ATGCGTTGGACTCGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATGGCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGCGGTT-GCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTGGAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAG actcagaccaaccttttcagccaacactctggtgcttgttttgcttctagATGCGCTGGACTCGTGGTGTCTCAGTGTGGCCTGTTGGTCTGGTGGGTGGCCTACGATTTGAAGGTCCTCAGGTACAAGATGGTCGTGTTGTTGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCAGGATTTGCGATTGCCCCTGCCCTTGCTATTGGCTAAACCCAATGCCCGGTTTGATGCTACTGCACCCCGGGGACACCTGGAAAGTAGCCTTCTAAGTCACCTTGTAGATCCAACGGACTTGGAGTCGCGGGCTGCCAATTGTACTCAGgtgagagaacggtagtcagatcagaggaaggggggggttctgggctgagc #### Bbs1_ID728_6 --> 1 - 2 Original Alignment gGAAAAGGCAGACGTGCCT-TTGTCTGTGCAGTCACTCag cccaaaactcttcctatgggtccttgtctcttatctccttcaatttttaggGAAAAGGCAGATTTACCTCTTGTCTGTGCAGTCACTTaggtgagtgtttattgtagagaggatgggggggatacccgtagagctagcta Alignment from CESAR gGAAAAGGCAGACGTGCCT-TTGTCTGTGCAGTCACTCag cccaaaactcttcctatgggtccttgtctcttatctccttcaatttttaggGAAAAGGCAGATTTACCTCTTGTCTGTGCAGTCACTTaggtgagtgtttattgtagagaggatgggggggatacccgtagagctagcta Alignment from Spaln_aa2Genome GGAAAAGGCAGACGTGCCT-TTGTCTGTGCAGTCACTCAG cccaaaactcttcctatgggtccttgtctcttatctccttcaatttttagGGAAAAGGCAGATTTACCTcTTGTCTGTGCAGTCACTTAGgtgagtgtttattgtagagaggatgggggggatacccgtagagctagcta Alignment from Spaln_nt2Genome GGAAAAGGCAGACGTGCCT-TTGTCTGTGCAGTCACTCAG cccaaaactcttcctatgggtccttgtctcttatctccttcaatttttagGGAAAAGGCAGATTTACCTCTTGTCTGTGCAGTCACTTAGgtgagtgtttattgtagagaggatgggggggatacccgtagagctagcta Alignment from Pairagon GGAAAAGGCAGACGTGCCT-TTGTCTGTGCAGTCACTCAG cccaaaactcttcctatgggtccttgtctcttatctccttcaatttttagGGAAAAGGCAGATTTACCTCTTGTCTGTGCAGTCACTTAGgtgagtgtttattgtagagaggatgggggggatacccgtagagctagcta Alignment from Exonerate_protein2genome GGAAAAGGCAGACGTGCCT-TTGTCTGTGCAGTCACTCAG cccaaaactcttcctatgggtccttgtctcttatctccttcaatttttagGGAAAAGGCAGATTTACCTCTTGTCTGTGCAGTCACTTAGgtgagtgtttattgtagagaggatgggggggatacccgtagagctagcta Alignment from Exonerate_coding2genome GGAAAAG cccaaaactcttcctatgggtccttgtctcttatctccttcaatttttagggaaaaggcagatttacctcttgtctgtgcagtcacttaggtgagtgtttattgtagagaggatgggggggatacccgtagagCTAGCTA Alignment from GeneWise --- cccaaaactcttcctatgggtccttgtctcttatctccttcaatttttagggaaaaggcagatttacctcttgtctgtgcagtcacttaggtgagtgtttattgtagagaggatgggggggatacccgtagagctagCTA #### Bbs1_ID729_5 --> 0 - 2 Original Alignment GACCAGATTGAC-CCCTTAACCCTGAAGGAGATGCTGGAGGACATCag atgactgccaccagtgctcccaaacacacttgactggctcatttctgaagGATCAT---GACCCCCTTGACCTTGAAAGATATGCTGGAACATATCaggtaagcgttcaccttttcttcttggtggcccccaaaactcttcctatggg Alignment from CESAR GACCAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGACATCag atgactgccaccagtgctcccaaacacacttgactggctcatttctgaagGATC--ATGACCCCCTTGACCTTGAAAGATATGCTGGAACATATCaggtaagcgttcaccttttcttcttggtggcccccaaaactcttcctatggg Alignment from Spaln_aa2Genome GACCAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGACATCAG atgactgccaccagtgctcccaaacacacttgactggctcatttctgaagGATC--ATGACCCCCTTGACCTTGAAAGATATGCTGGAACATATCAGgtaagcgttcaccttttcttcttggtggcccccaaaactcttcctatggg Alignment from Spaln_nt2Genome GACCAGATTGACCCC-TTAACCCTGAAGGAGATGCTGGAGGACATCAG atgactgccaccagtgctcccaaacacacttgactggctcatttctgaagGATCA---TGACCCCCTTGACCTTGAAAGATATGCTGGAACATATCAGgtaagcgttcaccttttcttcttggtggcccccaaaactcttcctatggg Alignment from Pairagon GACCAGATTGA-CCCCTTAACCCTGAAGGAGATGCTGGAGGACATCAG atgactgccaccagtgctcccaaacacacttgactggctcatttctgaagGATCA---TGACCCCCTTGACCTTGAAAGATATGCTGGAACATATCAGgtaagcgttcaccttttcttcttggtggcccccaaaactcttcctatggg Alignment from Exonerate_protein2genome GACCAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGACATCAG atgactgccaccagtgctcccaaacacacttgactggctcatttctgaAGGATCATGACCCCCTTGACCTTGAAAGATATGCTGGAACATATCAGgtaagcgttcaccttttcttcttggtggcccccaaaactcttcctatggg Alignment from Exonerate_coding2genome atgactgccaccagtgctcccaaacacacttgactggctcatttctgaaggatcatgacccccttgaccttgaaagatatgctggaacatatcaggtaagcgttcaccttttcttcttggtggcccccaaaactcttcctatggg Alignment from GeneWise atgactgccaccagtgctcccaaacacacttgactggctcatttctgaaggatcatgacccccttgaccttgaaagatatgctggaacatatcaggtaagcgttcaccttttcttcttggtggcccccaaaactcttcctatggg #### Bbs1_ID732_2 --> 1 - 1 Original Alignment cAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCCAACATCCACACC-TTCTCCTCCTGCCTGt tattcatcaatctattctgggcataccttgacacagttcctcttccacaggAATGAGGCCAATTCCAAATGGCTGGATGCACACTATGACCCTATGGCTAACATCCATACTCTTCTCCTCCTGTCTGtgtatgcccccatgactcacctggaacatctggattctacgaggatgatct Alignment from CESAR cAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCCAACATCCACACC-TTCTCCTCCTGCCTGt tattcatcaatctattctgggcataccttgacacagttcctcttccacaggAATGAGGCCAATTCCAAATGGCTGGATGCACACTATGACCCTATGGCTAACATCCATACTCTTCTCCTCCTGTCTGtgtatgcccccatgactcacctggaacatctggattctacgaggatgaata Alignment from Spaln_aa2Genome CAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCCAACATCCACACC-TTCTCCTCCTGCCTGT tattcatcaatctattctgggcataccttgacacagttcctcttccacagGAATGAGGCCAATTCCAAATGGCTGGATGCACACTATGACCCTATGGCTAACATCCATACTcTTCTCCTCCTGTCTGTgtatgcccccatgactcacctggaacatctggattctacgaggatgatct Alignment from Spaln_nt2Genome CAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCCAACATCCACAC-CTTCTCCTCCTGCCTGT tattcatcaatctattctgggcataccttgacacagttcctcttccacagGAATGAGGCCAATTCCAAATGGCTGGATGCACACTATGACCCTATGGCTAACATCCATACTCTTCTCCTCCTGTCTGTgtatgcccccatgactcacctggaacatctggattctacgaggatgatct Alignment from Pairagon CAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCCAACATCCACAC-CTTCTCCTCCTGCCTGT tattcatcaatctattctgggcataccttgacacagttcctcttccacagGAATGAGGCCAATTCCAAATGGCTGGATGCACACTATGACCCTATGGCTAACATCCATACTCTTCTCCTCCTGTCTGTgtatgcccccatgactcacctggaacatctggattctacgaggatgatct Alignment from Exonerate_protein2genome CAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCCAACATCCACACC-TTCTCCTCCTGCCTGT tattcatcaatctattctgggcataccttgacacagttcctcttccacagGAATGAGGCCAATTCCAAATGGCTGGATGCACACTATGACCCTATGGCTAACATCCATACTCTTCTCCTCCTGTCTGTgtatgcccccatgactcacctggaacatctggattctacgaggatgatct Alignment from Exonerate_coding2genome tattcatcaatctattctgggcataccttgacacagttcctcttccacaggaatgaggccaattccaaatggctggatgcacactatgaccctatggctaacatccatactcttctcctcctgtctgtgtatgcccccatgactcacctggaacatctggattctacgaggatgatct Alignment from GeneWise AACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCCATGGCCAACATCCACACC---------------------------------------------------------------TTCT tattcatcaatctattctgggcataccttgacacagttcctcttccacaggAATGAGGCCAATTCCAAATGGCTGGATGCACACTATGACCCTATGGCTAACATCCATACTCTTCTCCTCCTGTCTGTGTATGCCCCCATGACTCACCTGGAACATCTGGATTCTACGAGGATGATCT #### Best1_ID2630_9 --> 1 - 1 Original Alignment cCTAAAGAAAGAAGACTTAGAGCTTTGGTCAAAAGAGGAGGCTGACACGGATAAGAAAGAGAGTGGCTATAGCAGCACCATAGGCTGCTTCTTAGGACTGCAACCCAAAAACTACCATCTTCCCTTGAAAGACTTAAAGACCAAACTATTGTGT-TCTAAGAACCCCCTCCTCGAAGGCCAGTGTAAGGATGCCAACCAGAAAAACCAGAAAGATGTCTGGAAATTTAAGGGTCTGGACTTCTTGAAATGTGTTCCAAGGTTTAAGAGGAGAGGCTCCCATTGTGGCCCACAGGCACCCAGCAGCCACCCTACTGAGCAGTCAGCACCCTCCAGTTCAGACACAg acaccaggttcccagtgagagcaagttgacccatccttggctctccccagtCTAAAGAAAGAAGACTTAGAGCTGTGGTCTAAAGAGGAGGCTGACATGGATAAGAAAGTGAGTGGCTACAGCAGCACCATAGGTTGTTTCCTAGGCCTAGAACCAAAAAACTACCATCTTCCCTTGAAAGACCTAAAGACCAAGCTATTGTGTCACTAAGAACCCCCTTCTTGAGGGCCAGTTTAAGGATGCAAATCAAAAAAACCAGAAAGATGTCTGGAAATTTAAG---GTGGACTTCTTAAAATGTGTCCCAAGGTTTAAGAGGAGAGGTGCTTATTGTGGGCCACAGGCACCTAGCAGCCATCCTACTGAGCAGTCAGCATCCTCCAGTTCACACACAggtaagtgctgttaagaataaaaggtaacacccatgacttctgtgatcaac Alignment from CESAR cCTAAAGAAAGAAGACTTAGAGCTTTGGTCAAAAGAGGAGGCTGACACGGATAAGAAAGAGAGTGGCTATAGCAGCACCATAGGCTGCTTCTTAGGACTGCAACCCAAAAACTACCATCTTCCCTTGAAAGACTTAAAGACCAAACTATTGTGT-TCTAAGAACCCCCTCCTCGAAGGCCAGTGTAAGGATGCCAACCAGAAAAACCAGAAAGATGTCTGGAAATTTAAGGGTCTGGACTTCTTGAAATGTGTTCCAAGGTTTAAGAGGAGAGGCTCCCATTGTGGCCCACAGGCACCCAGCAGCCACCCTACTGAGCAGTCAGCACCCTCCAGTTCAGACACAg acaccaggttcccagtgagagcaagttgacccatccttggctctccccagtCTAAAGAAAGAAGACTTAGAGCTGTGGTCTAAAGAGGAGGCTGACATGGATAAGAAAGTGAGTGGCTACAGCAGCACCATAGGTTGTTTCCTAGGCCTAGAACCAAAAAACTACCATCTTCCCTTGAAAGACCTAAAGACCAAGCTATTGTGTCACTAAGAACCCCCTTCTTGAGGGCCAGTTTAAGGATGCAAATCAAAAAAACCAGAAAGATGTCTGGAAATTTAAG---GTGGACTTCTTAAAATGTGTCCCAAGGTTTAAGAGGAGAGGTGCTTATTGTGGGCCACAGGCACCTAGCAGCCATCCTACTGAGCAGTCAGCATCCTCCAGTTCACACACAggtaagtgctgttaagaataaaaggtaacacccatgacttctgtgatcaac Alignment from Spaln_aa2Genome CCTAAAGAAAGAAGACTTAGAGCTTTGGTCAAAAGAGGAGGCTGACACGGATAAGAAAGAGAGTGGCTATAGCAGCACCATAGGCTGCTTCTTAGGACTGCAACCCAAAAACTACCATCTTCCCTTGAAAGACTTAAAGACCAAACTATTGTGT-TCTAAGAACCCCCTCCTCGAAGGCCAGTGTAAGGATGCCAACCAGAAAAACCAGAAAGATGTCTGGAAATTTAAGGGTCTGGACTTCTTGAAATGTGTTCCAAGGTTTAAGAGGAGAGGCTCCCATTGTGGCCCACAGGCACCCAGCAGCCACCCTACTGAGCAGTCAGCACCCTCCAGTTCAGACACAG acaccaggttcccagtgagagcaagttgacccatccttggctctccccagTCTAAAGAAAGAAGACTTAGAGCTGTGGTCTAAAGAGGAGGCTGACATGGATAAGAAAGTGAGTGGCTACAGCAGCACCATAGGTTGTTTCCTAGGCCTAGAACCAAAAAACTACCATCTTCCCTTGAAAGACCTAAAGACCAAGCTATTGTGTcACTAAGAACCCCCTTCTTGAGGGCCAGTTTAAGGATGCAAATCAAAAAAACCAGAAAGATGTCTGGAAATTTAAG---GTGGACTTCTTAAAATGTGTCCCAAGGTTTAAGAGGAGAGGTGCTTATTGTGGGCCACAGGCACCTAGCAGCCATCCTACTGAGCAGTCAGCATCCTCCAGTTCACACACAGgtaagtgctgttaagaataaaaggtaacacccatgacttctgtgatcaac Alignment from Spaln_nt2Genome CCTAAAGAAAGAAGACTTAGAGCTTTGGTCAAAAGAGGAGGCTGACACGGATAAGAAAGAGAGTGGCTATAGCAGCACCATAGGCTGCTTCTTAGGACTGCAACCCAAAAACTACCATCTTCCCTTGAAAGACTTAAAGACCAAACTATTGTGTT-CTAAGAACCCCCTCCTCGAAGGCCAGTGTAAGGATGCCAACCAGAAAAACCAGAAAGATGTCTGGAAATTTAAGGGTCTGGACTTCTTGAAATGTGTTCCAAGGTTTAAGAGGAGAGGCTCCCATTGTGGCCCACAGGCACCCAGCAGCCACCCTACTGAGCAGTCAGCACCCTCCAGTTCAGACACAG acaccaggttcccagtgagagcaagttgacccatccttggctctccccagTCTAAAGAAAGAAGACTTAGAGCTGTGGTCTAAAGAGGAGGCTGACATGGATAAGAAAGTGAGTGGCTACAGCAGCACCATAGGTTGTTTCCTAGGCCTAGAACCAAAAAACTACCATCTTCCCTTGAAAGACCTAAAGACCAAGCTATTGTGTCACTAAGAACCCCCTTCTTGAGGGCCAGTTTAAGGATGCAAATCAAAAAAACCAGAAAGATGTCTGGAAATTTAAGG---TGGACTTCTTAAAATGTGTCCCAAGGTTTAAGAGGAGAGGTGCTTATTGTGGGCCACAGGCACCTAGCAGCCATCCTACTGAGCAGTCAGCATCCTCCAGTTCACACACAGgtaagtgctgttaagaataaaaggtaacacccatgacttctgtgatcaac Alignment from Pairagon CCTAAAGAAAGAAGACTTAGAGCTTTGGTCAAAAGAGGAGGCTGACACGGATAAGAAAGAGAGTGGCTATAGCAGCACCATAGGCTGCTTCTTAGGACTGCAACCCAAAAACTACCATCTTCCCTTGAAAGACTTAAAGACCAAACTATTGTGTT-CTAAGAACCCCCTCCTCGAAGGCCAGTGTAAGGATGCCAACCAGAAAAACCAGAAAGATGTCTGGAAATTTAAGGGTCTGGACTTCTTGAAATGTGTTCCAAGGTTTAAGAGGAGAGGCTCCCATTGTGGCCCACAGGCACCCAGCAGCCACCCTACTGAGCAGTCAGCACCCTCCAGTTCAGACACAG acaccaggttcccagtgagagcaagttgacccatccttggctctccccagTCTAAAGAAAGAAGACTTAGAGCTGTGGTCTAAAGAGGAGGCTGACATGGATAAGAAAGTGAGTGGCTACAGCAGCACCATAGGTTGTTTCCTAGGCCTAGAACCAAAAAACTACCATCTTCCCTTGAAAGACCTAAAGACCAAGCTATTGTGTCACTAAGAACCCCCTTCTTGAGGGCCAGTTTAAGGATGCAAATCAAAAAAACCAGAAAGATGTCTGGAAATTTAAGG---TGGACTTCTTAAAATGTGTCCCAAGGTTTAAGAGGAGAGGTGCTTATTGTGGGCCACAGGCACCTAGCAGCCATCCTACTGAGCAGTCAGCATCCTCCAGTTCACACACAGgtaagtgctgttaagaataaaaggtaacacccatgacttctgtgatcaac Alignment from Exonerate_protein2genome CCTAAAGAAAGAAGACTTAGAGCTTTGGTCAAAAGAGGAGGCTGACACGGATAAGAAAGAGAGTGGCTATAGCAGCACCATAGGCTGCTTCTTAGGACTGCAACCCAAAAACTACCATCTTCCCTTGAAAGACTTAAAGACCAAACTATTGTGT-TCTAAGAACCCCCTCCTCGAAGGCCAGTGTAAGGATGCCAACCAGAAAAACCAGAAAGATGTCTGGAAATTTAAGGGTCTGGACTTCTTGAAATGTGTTCCAAGGTTTAAGAGGAGAGGCTCCCATTGTGGCCCACAGGCACCCAGCAGCCACCCTACTGAGCAGTCAGCACCCTCCAGTTCAGACACAG acaccaggttcccagtgagagcaagttgacccatccttggctctccccagTCTAAAGAAAGAAGACTTAGAGCTGTGGTCTAAAGAGGAGGCTGACATGGATAAGAAAGTGAGTGGCTACAGCAGCACCATAGGTTGTTTCCTAGGCCTAGAACCAAAAAACTACCATCTTCCCTTGAAAGACCTAAAGACCAAGCTATTGTGTCACTAAGAACCCCCTTCTTGAGGGCCAGTTTAAGGATGCAAATCAAAAAAACCAGAAAGATGTCTGGAAATTTAAG---GTGGACTTCTTAAAATGTGTCCCAAGGTTTAAGAGGAGAGGTGCTTATTGTGGGCCACAGGCACCTAGCAGCCATCCTACTGAGCAGTCAGCATCCTCCAGTTCACACACAGgtaagtgctgttaagaataaaaggtaacacccatgacttctgtgatcaac Alignment from Exonerate_coding2genome CCTAAAGAAAGAAGACTTAGAGCTTTGGTCAAAAGAGGAGGCTGACACGGATAAGAAAGAGAGTGGCTATAGCAGCACCATAGGCTGCTTCTTAGGACTGCAACCCAAAAACTACCATCTTCCCTTGAAAGACTTAAAGACCAAACTATTGTGT-TCTAAGAACCCCCTCCTCGAAGGCCAGTGTAAGGATGCCAACCAGAAAAACCAGAAAGATGTCTGGAAATTTAAGGGTCTGGACTTCTTGAAATGTGTTCCAAGGTTTAAGAGGAGAGGCTCCCATTGTGGCCCACAGGCACCCAGCAGCCACCCTACTGAGCAGTCAGCACCCTCCAGTTCAGACACAG acaccaggttcccagtgagagcaagttgacccatccttggctctccccagTCTAAAGAAAGAAGACTTAGAGCTGTGGTCTAAAGAGGAGGCTGACATGGATAAGAAAGTGAGTGGCTACAGCAGCACCATAGGTTGTTTCCTAGGCCTAGAACCAAAAAACTACCATCTTCCCTTGAAAGACCTAAAGACCAAGCTATTGTGTCACTAAGAACCCCCTTCTTGAGGGCCAGTTTAAGGATGCAAATCAAAAAAACCAGAAAGATGTCTGGAAATTTAAG---GTGGACTTCTTAAAATGTGTCCCAAGGTTTAAGAGGAGAGGTGCTTATTGTGGGCCACAGGCACCTAGCAGCCATCCTACTGAGCAGTCAGCATCCTCCAGTTCACACACAGgtaagtgctgttaagaataaaaggtaacacccatgacttctgtgatcaac Alignment from GeneWise CCTAAAGAAAGAAGACTTAGAGCTTTGGTCAAAAGAGGAGGCTGACACGGATAAGAAAGAGAGTGGCTATAGCAGCACCATAGGCTGCTTCTTAGGACTGCAACCCAAAAACTACCATCTTCCCTTGAAAGACTTAAAGACCAAACTATTGTGT-TCTAAGAACCCCCTCCTCGAAGGCCAGTGTAAGGATGCCAACCAGAAAAACCAGAAAGATGTCTGGAAATTTAAGGGTCTGGACTTCTTGAAATGTGTTCCAAGGTTTAAGAGGAGAGGCTCCCATTGTGGCCCACAGGCACCCAGCAGCCACCCTACTGAGCAGTCAGCACCCTCCAGTTCAGACACAG acaccaggttcccagtgagagcaagttgacccatccttggctctccccagTCTAAAGAAAGAAGACTTAGAGCTGTGGTCTAAAGAGGAGGCTGACATGGATAAGAAAGTGAGTGGCTACAGCAGCACCATAGGTTGTTTCCTAGGCCTAGAACCAAAAAACTACCATCTTCCCTTGAAAGACCTAAAGACCAAGCTATTGTGTCACTAAGAACCCCCTTCTTGAGGGCCAGTTTAAGGATGCAAATCAAAAAAACCAGAAAGATGTCTGGAAATTTAAG---GTGGACTTCTTAAAATGTGTCCCAAGGTTTAAGAGGAGAGGTGCTTATTGTGGGCCACAGGCACCTAGCAGCCATCCTACTGAGCAGTCAGCATCCTCCAGTTCACACACAGgtaagtgctgttaagaataaaaggtaacacccatgacttctgtgatcaac #### Best1_ID2631_8 --> 0 - 2 Original Alignment GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCG-CCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCag tggtaatagcttaggtgtattgactacagaaacgctcttcctatccacagGTATCCTTGTCATCTGTGGATAGGATGCACCAGAACCTGCCGCCCATGGAACGTGACATGTACTGGAATGAATCAGCACCCTCATCCC------ACGGCTGCCTCAGCCAGGTCTCGCCGGCATTCATTCATGGGATCTACCTTCAATCTCaggtgaggtgagctagggactgggtgaggtacccattaaatgcaaccagcgg Alignment from CESAR GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCG-CCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCag tggtaatagcttaggtgtattgactacagaaacgctcttcctatccacagGTATCCTTGTCATCTGTGGATAGGATGCACCAGAACCTGCCGCCCATGGAACGTGACATGTACTGGAATGAATCAGCACCCTCATCCC------ACGGCTGCCTCAGCCAGGTCTCGCCGGCATTCATTCATGGGATCTACCTTCAATCTCaggtgaggtgagctagggactgggtgaggtacccattaaatgcaaccagcgg Alignment from Spaln_aa2Genome GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG tggtaatagcttaggtgtattgactacagaaacgctcttcctatccacagGTATCCTTGTCATCTGTGGATAGGATGCACCAGAACCTGCCGCCCATGGAACGTGACATGTACTGGAATGAATCAGCACCCTCATCCC-----ACGGCTGCCTCAGCCAGGTCTCGCCGGCATTCATTCATGGGATCTACCTTCAATCTCAGgtgaggtgagctagggactgggtgaggtacccattaaatgcaaccagcgg Alignment from Spaln_nt2Genome GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCC-TCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG tggtaatagcttaggtgtattgactacagaaacgctcttcctatccacagGTATCCTTGTCATCTGTGGATAGGATGCACCAGAACCTGCCGCCCATGGAACGTGACATGTACTGGAATGAATCAGCACCCTCATCC------CACGGCTGCCTCAGCCAGGTCTCGCCGGCATTCATTCATGGGATCTACCTTCAATCTCAGgtgaggtgagctagggactgggtgaggtacccattaaatgcaaccagcgg Alignment from Pairagon GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCG-CCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG tggtaatagcttaggtgtattgactacagaaacgctcttcctatccacagGTATCCTTGTCATCTGTGGATAGGATGCACCAGAACCTGCCGCCCATGGAACGTGACATGTACTGGAATGAATCAGCACCCTCATCC------CACGGCTGCCTCAGCCAGGTCTCGCCGGCATTCATTCATGGGATCTACCTTCAATCTCAGgtgaggtgagctagggactgggtgaggtacccattaaatgcaaccagcgg Alignment from Exonerate_protein2genome GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCG-CCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG tggtaatagcttaggtgtattgactacagaaacgctcttcctatccacagGTATCCTTGTCATCTGTGGATAGGATGCACCAGAACCTGCCGCCCATGGAACGTGACATGTACTGGAATGAATCAGCACCCTCATCCC------ACGGCTGCCTCAGCCAGGTCTCGCCGGCATTCATTCATGGGATCTACCTTCAATCTCAGgtgaggtgagctagggactgggtgaggtacccattaaatgcaaccagcgg Alignment from Exonerate_coding2genome GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCG-CCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG tggtaatagcttaggtgtattgactacagaaacgctcttcctatccacagGTATCCTTGTCATCTGTGGATAGGATGCACCAGAACCTGCCGCCCATGGAACGTGACATGTACTGGAATGAATCAGCACCCTCATCCC------ACGGCTGCCTCAGCCAGGTCTCGCCGGCATTCATTCATGGGATCTACCTTCAATCTCAGgtgaggtgagctagggactgggtgaggtacccattaaatgcaaccagcgg Alignment from GeneWise GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG tggtaatagcttaggtgtattgactacagaaacgctcttcctatccacagGTATCCTTGTCATCTGTGGATAGGATGCACCAGAACCTGCCGCCCATGGAACGTGACATGTACTGGAATGAATCAGCACCCTCAT--CCC---ACGGCTGCCTCAGCCAGGTCTCGCCGGCATTCATTCATGGGATCTACCTTCAATCTCAGgtgaggtgagctagggactgggtgaggtacccattaaatgcaaccagcgg #### Bscl2_ID2422_5 --> 0 - 0 Original Alignment GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGC-TTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG cactaacactctattcaggcacccagaattacccctttcttcttttacagGTAATGCTGCAATATTGCTCACAGCTGCTCCAAGTGCTTGACAAACTGTTATTCTCCAGCCTCTTGCTGTTTGGCCTTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCACCACTAGAAATCTATACTGACTATAGGGAGAACTCAgtaagaggcagacaaccttgcaaagcacatcctcaatgagccagaatcat Alignment from CESAR GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGC-TTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG cactaacactctattcaggcacccagaattacccctttcttcttttacagGTAATGCTGCAATATTGCTCACAGCTGCTCCAAGTGCTTGACAAACTGTTATTCTCCAGCCTCTTGCTGTTTGGCCTTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCACCACTAGAAATCTATACTGACTATAGGGAGAACTCAgtaagaggcagacaaccttgcaaagcacatcctcaatgagccagaatcat Alignment from Spaln_aa2Genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGC-TTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG cactaacactctattcaggcacccagaattacccctttcttcttttacagGTAATGCTGCAATATTGCTCACAGCTGCTCCAAGTGCTTGACAAACTGTTATTCTCCAGCCTCTTGCTGTTTGGCcTTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCACCACTAGAAATCTATACTGACTATAGGGAGAACTCAgtaagaggcagacaaccttgcaaagcacatcctcaatgagccagaatcat Alignment from Spaln_nt2Genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGC-TTCGCTGAACAGAAGCAGCTCCTGGAAG---------------TAGAACTCTACTCTGACTATAGGGAGAATTCG cactaacactctattcaggcacccagaattacccctttcttcttttacagGTAATGCTGCAATATTGCTCACAGCTGCTCCAAGTGCTTGACAAACTGTTATTCTCCAGCCTCTTGCTGTTTGGCCTTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCACCACTAGAAATCTATACTGACTATAGGGAGAACTCAgtaagaggcagacaaccttgcaaagcacatcctcaatgagccagaatcat Alignment from Pairagon GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGG-CTTCGCTGAACAGAAGCAGCTCCTGGAAG---------------TAGAACTCTACTCTGACTATAGGGAGAATTCG cactaacactctattcaggcacccagaattacccctttcttcttttacagGTAATGCTGCAATATTGCTCACAGCTGCTCCAAGTGCTTGACAAACTGTTATTCTCCAGCCTCTTGCTGTTTGGCCTTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCACCACTAGAAATCTATACTGACTATAGGGAGAACTCAgtaagaggcagacaaccttgcaaagcacatcctcaatgagccagaatcat Alignment from Exonerate_protein2genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGC-TTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG cactaacactctattcaggcacccagaattacccctttcttcttttacagGTAATGCTGCAATATTGCTCACAGCTGCTCCAAGTGCTTGACAAACTGTTATTCTCCAGCCTCTTGCTGTTTGGCCTTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCACCACTAGAAATCTATACTGACTATAGGGAGAACTCAgtaagaggcagacaaccttgcaaagcacatcctcaatgagccagaatcat Alignment from Exonerate_coding2genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGC-TTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG cactaacactctattcaggcacccagaattacccctttcttcttttacagGTAATGCTGCAATATTGCTCACAGCTGCTCCAAGTGCTTGACAAACTGTTATTCTCCAGCCTCTTGCTGTTTGGCCTTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCACCACTAGAAATCTATACTGACTATAGGGAGAACTCAgtaagaggcagacaaccttgcaaagcacatcctcaatgagccagaatcat Alignment from GeneWise GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTT-GGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTACTCTGACTATAGGGAGAATTCG cactaacactctattcaggcacccagaattacccctttcttcttttacagGTAATGCTGCAATATTGCTCACAGCTGCTCCAAGTGCTTGACAAACTGTTATTCTCCAGCCTCTTGCTGTTTGGCCTTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCACCACTAGAAATCTATACTGACTATAGGGAGAACTCAgtaagaggcagacaaccttgcaaagcacatcctcaatgagccagaatcat #### Bscl2_ID2425_8 --> 0 - 1 Original Alignment GTTAATATCCGA-CAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAg ttcctgagaggggagtctaggatcacaaatttctctcttccctgtcccagGTCAATACATGTCCAAAGGGATAACTCACACCATGGA------GACCGCATTTCACACCACCAGCCAggtgagtaaattggttaataggagtttggggggaaaatacattaagagagt Alignment from CESAR GTTAATATCCGA-CAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAg ttcctgagaggggagtctaggatcacaaatttctctcttccctgtcccagGTCAATACATGTCCAAAGGGATAACTCACACCATGGAGAC------CGCATTTCACACCACCAGCCAggtgagtaaattggttaataggagtttggggggaaaatacattaagagagt Alignment from Spaln_aa2Genome GCAGGTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG ttcctgagaggggagtctaggatcacaaatttctctcttccctgtcccagGTCAATACATGTC---CAAAGGGATAACTCACACCATGGAGAC------CGCATTTCACACCACCAGCCAGgtgagtaaattggttaataggagtttggggggaaaatacattaagagagt Alignment from Spaln_nt2Genome GTTAATATCCGAC-AAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG ttcctgagaggggagtctaggatcacaaatttctctcttccctgtcccagGTCAATACATGTCCAAAGGGATAACTCACACCATGGAGAC------CGCATTTCACACCACCAGCCAGgtgagtaaattggttaataggagtttggggggaaaatacattaagagagt Alignment from Pairagon GTTAATA----TCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG ttcctgagaggggagtctaggatcacaaatttctctcttccctgtcccagGTCAATACATGTC---CAAAGGGATAACTCACACCATGGAGAC------CGCATTTCACACCACCAGCCAGgtgagtaaattggttaataggagtttggggggaaaatacattaagagagt Alignment from Exonerate_protein2genome GTTAATATC-CGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG ttcctgagaggggagtctaggatcacaaatttctctcttccctgtcccagGTCAATACATGTCCAAAGGGATAACTCACACCATGGA------GACCGCATTTCACACCACCAGCCAGgtgagtaaattggttaataggagtttggggggaaaatacattaagagagt Alignment from Exonerate_coding2genome TCTCGCGCCATCAGCC TTCCTGAGAGGGGAGTctaggatcacaaatttctctcttccctgtcccaggtcaatacatgtccaaagggataactcacaccatggagaccgcatttcacaccaccagccaggtgagtaaattggttaataggagtttggggggaaaatacattaagagagt Alignment from GeneWise TCTCGCGCCATCAG TTCCTGAGAGGGGAgtctaggatcacaaatttctctcttccctgtcccaggtcaatacatgtccaaagggataactcacaccatggagaccgcatttcacaccaccagccaggtgagtaaattggttaataggagtttggggggaaaatacattaagagagt #### Bscl2_ID2427_10 --> 2 - 1 Original Alignment agGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAG-GAGGAGCAAGAGCCAGAGGCTAGTGATg cagtgccagagctctcccctctgtctcaaggaaattcttatttttttaagagGGCCAA---CCAGAAGAGGAGAAAGCAAAGAAGTGGCCCCTGAATGGAGAGCGAGGAGCGAGAGCCAGACGCTGGTGATggtgagcgtgggggcagcatactcatagacaggggtactgtgtggtgggga Alignment from CESAR agGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAG-GAGGAGCAAGAGCCAGAGGCTAGTGATg cagtgccagagctctcccctctgtctcaaggaaattcttatttttttaagagGGCCAA---CCAGAAGAGGAGAAAGCAAAGAAGTGGCCCCTGAATGGAGAGCGAGGAGCGAGAGCCAGACGCTGGTGATggtgagcgtgggggcagcatactcatagacaggggtactgtgtggtgggga Alignment from Spaln_aa2Genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAG-GAGGAGCAAGAGCCAGAGGCTAGTGATG cagtgccagagctctcccctctgtctcaaggaaattcttatttttttaagAGGGCCAA---CCAGAAGAGGAGAAAGCAAAGAAGTGGCCCCTGAATGGAGAGcGAGGAGCGAGAGCCAGACGCTGGTGATGgtgagcgtgggggcagcatactcatagacaggggtactgtgtggtgggga Alignment from Spaln_nt2Genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAG-GAGGAGCAAGAGCCAGAGGCTAGTGATG cagtgccagagctctcccctctgtctcaaggaaattcttatttttttaagAGGGCCAAC---CAGAAGAGGAGAAAGCAAAGAAGTGGCCCCTGAATGGAGAGCGAGGAGCGAGAGCCAGACGCTGGTGATGgtgagcgtgggggcagcatactcatagacaggggtactgtgtggtgggga Alignment from Pairagon AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAG-GAGGAGCAAGAGCCAGAGGCTAGTGATG cagtgccagagctctcccctctgtctcaaggaaattcttatttttttaagAGGGCCAAC---CAGAAGAGGAGAAAGCAAAGAAGTGGCCCCTGAATGGAGAGCGAGGAGCGAGAGCCAGACGCTGGTGATGgtgagcgtgggggcagcatactcatagacaggggtactgtgtggtgggga Alignment from Exonerate_protein2genome cagtgccagagctctcccctctgtctcaaggaaattcttatttttttaagagggccaaccagaagaggagaaagcaaagaagtggcccctgaatggagagcgaggagcgagagccagacgctggtgatggtgagcgtgggggcagcatactcatagacaggggtactgtgtggtgggga Alignment from Exonerate_coding2genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAG-GAGGAGCAAGAGCCAGAGGCTAGTGATG cagtgccagagctctcccctctgtctcaaggaaattcttatttttttaagAGGGCCAA---CCAGAAGAGGAGAAAGCAAAGAAGTGGCCCCTGAATGGAGAGCGAGGAGCGAGAGCCAGACGCTGGTGATGgtgagcgtgggggcagcatactcatagacaggggtactgtgtggtgggga Alignment from GeneWise GAGGAGGAGCAAGAGCCAGAG- CAGTGCCAGAGCTCTCCCCTCTgtctcaaggaaattcttatttttttaagagggccaaccagaagaggagaaagcaaagaagtggcccctgaatggagagcgaggagcgagagccagacgctggtgatggtgagcgtgggggcagcatactcatagacaggggtactgtgtggtgggga #### Btrc_ID9458_8 --> 0 - 0 Original Alignment ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAAACAAGTAAAGGGGTTTACTGTTTACAGTACGACGACCAGAAGATAGTCAGCGGC-CTTCGAGACAACACCATCAAG caatgggtagttagattgtcttcattggtgtcttctctatttctttgcagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAAACAAGTAAAGGGGTCTACTGTTTACAGTATGATGATCAGAAGATAGTCAGTGGCCCTTCGAGACAACACCATCAAGgtgatggggaccacttcagtggagaagcaaacatccatagagtagtgtgc Alignment from CESAR ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAAACAAGTAAAGGGGTTTACTGTTTACAGTACGACGACCAGAAGATAGTCAGCGGC-CTTCGAGACAACACCATCAAG caatgggtagttagattgtcttcattggtgtcttctctatttctttgcagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAAACAAGTAAAGGGGTCTACTGTTTACAGTATGATGATCAGAAGATAGTCAGTGGCCCTTCGAGACAACACCATCAAGgtgatggggaccacttcagtggagaagcaaacatccatagagtagtgtgc Alignment from Spaln_aa2Genome ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAAACAAGTAAAGGGGTTTACTGTTTACAGTACGACGACCAGAAGATAGTCAGCGGC-CTTCGAGACAACACCATCAAG caatgggtagttagattgtcttcattggtgtcttctctatttctttgcagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAAACAAGTAAAGGGGTCTACTGTTTACAGTATGATGATCAGAAGATAGTCAGTGGCcCTTCGAGACAACACCATCAAGgtgatggggaccacttcagtggagaagcaaacatccatagagtagtgtgc Alignment from Spaln_nt2Genome ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAAACAAGTAAAGGGGTTTACTGTTTACAGTACGACGACCAGAAGATAGTCAGCGGC-CTTCGAGACAACACCATCAAG caatgggtagttagattgtcttcattggtgtcttctctatttctttgcagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAAACAAGTAAAGGGGTCTACTGTTTACAGTATGATGATCAGAAGATAGTCAGTGGCCCTTCGAGACAACACCATCAAGgtgatggggaccacttcagtggagaagcaaacatccatagagtagtgtgc Alignment from Pairagon ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAAACAAGTAAAGGGGTTTACTGTTTACAGTACGACGACCAGAAGATAGTCAGCGG-CCTTCGAGACAACACCATCAAG caatgggtagttagattgtcttcattggtgtcttctctatttctttgcagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAAACAAGTAAAGGGGTCTACTGTTTACAGTATGATGATCAGAAGATAGTCAGTGGCCCTTCGAGACAACACCATCAAGgtgatggggaccacttcagtggagaagcaaacatccatagagtagtgtgc Alignment from Exonerate_protein2genome ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAAACAAGTAAAGGGGTTTACTGTTTACAGTACGACGACCAGAAGATAGTCAGCGGC-CTTCGAGACAACACCATCAAG caatgggtagttagattgtcttcattggtgtcttctctatttctttgcagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAAACAAGTAAAGGGGTCTACTGTTTACAGTATGATGATCAGAAGATAGTCAGTGGCCCTTCGAGACAACACCATCAAGgtgatggggaccacttcagtggagaagcaaacatccatagagtagtgtgc Alignment from Exonerate_coding2genome ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAAACAAGTAAAGGGGTTTACTGTTTACAGTACGACGACCAGAAGATAGTCAGCGGC-CTTCGAGACAACACCATCAAG caatgggtagttagattgtcttcattggtgtcttctctatttctttgcagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAAACAAGTAAAGGGGTCTACTGTTTACAGTATGATGATCAGAAGATAGTCAGTGGCCCTTCGAGACAACACCATCAAGgtgatggggaccacttcagtggagaagcaaacatccatagagtagtgtgc Alignment from GeneWise ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAAACAAGTAAAGGGGTTTACTGTTTACAGTACGACGACCAGAAGATAGTCAGCGGC-CTTCGAGACAACACCATCAAG caatgggtagttagattgtcttcattggtgtcttctctatttctttgcagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAAACAAGTAAAGGGGTCTACTGTTTACAGTATGATGATCAGAAGATAGTCAGTGGCCCTTCGAGACAACACCATCAAGgtgatggggaccacttcagtggagaagcaaacatccatagagtagtgtgc #### Cabp2_ID288_3 --> 0 - 1 Original Alignment GATCGAGAGCTGAGACCA-GAAGAGATCGAAg ttgttatactaaagattggagtggctccacccttgctctgatcttcccagGACCGGGAG---AGACCACGAAAAAATTGAAggtaaggattctattatagctgaggtacagtgtatgctcaggattacaaaa Alignment from CESAR GATCGAGAGCTGAGACCA-GAAGAGATCGAAg ttgttatactaaagattggagtggctccacccttgctctgatcttcccagGACCGGGAG---AGACCACGAAAAAATTGAAggtaaggattctattatagctgaggtacagtgtatgctcaggattacaaaa Alignment from Spaln_aa2Genome GCTCGATCGAGAGCTGAGACCAGAAGAGATCGAAG ttgttatactaaagattggagtggctccacccttgctctgatcttcccagGACCGGGAGAGAC------CACGAAAAAATTGAAGgtaaggattctattatagctgaggtacagtgtatgctcaggattacaaaa Alignment from Spaln_nt2Genome GATCGAGAGCTGAGACCA-GAAGAGATCGAAG ttgttatactaaagattggagtggctccacccttgctctgatcttcccagGACCGGGA---GAGACCACGAAAAAATTGAAGgtaaggattctattatagctgaggtacagtgtatgctcaggattacaaaa Alignment from Pairagon GATCGAGAGCTGAGACCA-GAAGAGATCGAAG ttgttatactaaagattggagtggctccacccttgctctgatcttcccagGACCGGGA---GAGACCACGAAAAAATTGAAGgtaaggattctattatagctgaggtacagtgtatgctcaggattacaaaa Alignment from Exonerate_protein2genome ttgttatactaaagattggagtggctccacccttgctctgatcttcccaggaccgggagagaccacgaaaaaattgaaggtaaggattctattatagctgaggtacagtgtatgctcaggattacaaaa Alignment from Exonerate_coding2genome ttgttatactaaagattggagtggctccacccttgctctgatcttcccaggaccgggagagaccacgaaaaaattgaaggtaaggattctattatagctgaggtacagtgtatgctcaggattacaaaa Alignment from GeneWise ttgttatactaaagattggagtggctccacccttgctctgatcttcccaggaccgggagagaccacgaaaaaattgaaggtaaggattctattatagctgaggtacagtgtatgctcaggattacaaaa #### Cabp2_ID290_5 --> 2 - 0 Original Alignment gtGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTT-CGAGACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctggctgggaatctttgtttccaggtGGTGGAAAGGTTCACTTTGAAGTTTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGGGAGAGAGAACTTCAAAGATGCTTTTAGGGAGgtaggtcttaggtagtgggtggcagtggttgatggatttatggttcagta Alignment from CESAR gtGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTT-CGAGACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctggctgggaatctttgtttccaggtGGTGGAAAGGTTCACTTTGAAGTTTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGGGAGAGAGAACTTCAAAGATGCTTTTAGGGAGgtaggtcttaggtagtgggtggcagtggttgatggatttatggttcagta Alignment from Spaln_aa2Genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTT-CGAGACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctggctgggaatctttgtttccagGTGGTGGAAAGGTTCACTTTGAAGTTTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGGGAGAGAGAACTTcAAAGATGCTTTTAGGGAGgtaggtcttaggtagtgggtggcagtggttgatggatttatggttcagta Alignment from Spaln_nt2Genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGA-GACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctggctgggaatctttgtttccagGTGGTGGAAAGGTTCACTTTGAAGTTTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGGGAGAGAGAACTTCAAAGATGCTTTTAGGGAGgtaggtcttaggtagtgggtggcagtggttgatggatttatggttcagta Alignment from Pairagon GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTC-GAGACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctggctgggaatctttgtttccagGTGGTGGAAAGGTTCACTTTGAAGTTTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGGGAGAGAGAACTTCAAAGATGCTTTTAGGGAGgtaggtcttaggtagtgggtggcagtggttgatggatttatggttcagta Alignment from Exonerate_protein2genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTT-CGAGACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctggctgggaatctttgtttccagGTGGTGGAAAGGTTCACTTTGAAGTTTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGGGAGAGAGAACTTCAAAGATGCTTTTAGGGAGgtaggtcttaggtagtgggtggcagtggttgatggatttatggttcagta Alignment from Exonerate_coding2genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTT-CGAGACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctggctgggaatctttgtttccagGTGGTGGAAAGGTTCACTTTGAAGTTTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGGGAGAGAGAACTTCAAAGATGCTTTTAGGGAGgtaggtcttaggtagtgggtggcagtggttgatggatttatggttcagta Alignment from GeneWise GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTT-CGAGACGCCTTCCGGGAG gttagtcaggcaccaacccaagctctctggctgggaatctttgtttccagGTGGTGGAAAGGTTCACTTTGAAGTTTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCAGACATGATTGGGGAGAGAGAACTTCAAAGATGCTTTTAGGGAGgtaggtcttaggtagtgggtggcagtggttgatggatttatggttcagta #### Cabp2_ID291_6 --> 0 - 1 Original Alignment TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGC-CTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAg gaatggatccatggctcagtcactgatcaagcctgtgtgacctcttccagTTTGACACCAATGGCGATGGTTGCATCAGTGTAGGGGAACTTCAAGCAGCACTTAAAGCCCTGCTAGGTGTACGTCCTCAGCCAACGGGAAGTAGATGAAATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAggtaagcttccccctgctttgtccctttatcttgtgcattgaactattaag Alignment from CESAR TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGC-CTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAg gaatggatccatggctcagtcactgatcaagcctgtgtgacctcttccagTTTGACACCAATGGCGATGGTTGCATCAGTGTAGGGGAACTTCAAGCAGCACTTAAAGCCCTGCTAGGTGTACGTCCTCAGCCAACGGGAAGTAGATGAAATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAggtaagcttccccctgctttgtccctttatcttgtgcattgaactattaag Alignment from Spaln_aa2Genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGC-CTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gaatggatccatggctcagtcactgatcaagcctgtgtgacctcttccagTTTGACACCAATGGCGATGGTTGCATCAGTGTAGGGGAACTTCAAGCAGCACTTAAAGCCCTGCTAGGTGTACGTcCTCAGCCAACGGGAAGTAGATGAAATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAGgtaagcttccccctgctttgtccctttatcttgtgcattgaactattaag Alignment from Spaln_nt2Genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACG-CCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gaatggatccatggctcagtcactgatcaagcctgtgtgacctcttccagTTTGACACCAATGGCGATGGTTGCATCAGTGTAGGGGAACTTCAAGCAGCACTTAAAGCCCTGCTAGGTGTACGTCCTCAGCCAACGGGAAGTAGATGAAATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAGgtaagcttccccctgctttgtccctttatcttgtgcattgaactattaag Alignment from Pairagon TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACG-CCTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gaatggatccatggctcagtcactgatcaagcctgtgtgacctcttccagTTTGACACCAATGGCGATGGTTGCATCAGTGTAGGGGAACTTCAAGCAGCACTTAAAGCCCTGCTAGGTGTACGTCCTCAGCCAACGGGAAGTAGATGAAATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAGgtaagcttccccctgctttgtccctttatcttgtgcattgaactattaag Alignment from Exonerate_protein2genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGC-CTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAG gaatggatccatggctcagtcactgatcaagcctgtgtgacctcttccagTTTGACACCAATGGCGATGGTTGCATCAGTGTAGGGGAACTTCAAGCAGCACTTAAAGCCCTGCTAGGTGTACGTCCTCAGCCAACGGGAAGTAGATGAAATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAGgtaagcttccccctgctttgtccctttatcttgtgcattgaactattaag Alignment from Exonerate_coding2genome TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGC-CTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAA gaatggatccatggctcagtcactgatcaagcctgtgtgacctcttccagTTTGACACCAATGGCGATGGTTGCATCAGTGTAGGGGAACTTCAAGCAGCACTTAAAGCCCTGCTAGGTGTACGTCCTCAGCCAACGGGAAGTAGATGAAATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAggtaagcttccccctgctttgtccctttatcttgtgcattgaactattaag Alignment from GeneWise TTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGC-CTCAGCCAACGGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAA---GAATTTGTTCGGATGATGTCTCGG gaatggatccatggctcagtcactgatcaagcctgtgtgacctcttccagTTTGACACCAATGGCGATGGTTGCATCAGTGTAGGGGAACTTCAAGCAGCACTTAAAGCCCTGCTAGGTGTACGTCCTCAGCCAACGGGAAGTAGATGAAATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAGGTAAGCTTCCCCCTGCTTTGTCCCTTtatcttgtgcattgaactattaag #### Cabp4_ID342_2 --> 0 - 1 Original Alignment GATCGTGAACTG-GGCCCTGAGGAGTTGGAGg gcaggctcatttctatcgaggattttggcttgcctcctcttttcccacagGACCGTGAGCTGCGGACCTGAGGAGTTGGAGggtctgggttcctcactgttgttgagaagtggaaaggaagtctgatactat Alignment from CESAR GATCGTGAACTG-GGCCCTGAGGAGTTGGAGg gcaggctcatttctatcgaggattttggcttgcctcctcttttcccacagGACCGTGAGCTGCGGACCTGAGGAGTTGGAGggtctgggttcctcactgttgttgagaagtggaaaggaagtctgatactat Alignment from Spaln_aa2Genome GATCGTGAACTG-GGCCCTGAGGAGTTGGAGG gcaggctcatttctatcgaggattttggcttgcctcctcttttcccacagGACCGTGAGCTGcGGACCTGAGGAGTTGGAGGgtctgggttcctcactgttgttgagaagtggaaaggaagtctgatactat Alignment from Spaln_nt2Genome GATCGTGAACTG-GGCCCTGAGGAGTTGGAGG gcaggctcatttctatcgaggattttggcttgcctcctcttttcccacagGACCGTGAGCTGCGGACCTGAGGAGTTGGAGGgtctgggttcctcactgttgttgagaagtggaaaggaagtctgatactat Alignment from Pairagon GATCGTGAACTG-GGCCCTGAGGAGTTGGAGG gcaggctcatttctatcgaggattttggcttgcctcctcttttcccacagGACCGTGAGCTGCGGACCTGAGGAGTTGGAGGgtctgggttcctcactgttgttgagaagtggaaaggaagtctgatactat Alignment from Exonerate_protein2genome GATCGTGAACTG-GGCCCTGAGGAGTTGGAGG gcaggctcatttctatcgaggattttggcttgcctcctcttttcccacagGACCGTGAGCTGCGGACCTGAGGAGTTGGAGGgtctgggttcctcactgttgttgagaagtggaaaggaagtctgatactat Alignment from Exonerate_coding2genome gcaggctcatttctatcgaggattttggcttgcctcctcttttcccacaggaccgtgagctgcggacctgaggagttggagggtctgggttcctcactgttgttgagaagtggaaaggaagtctgatactat Alignment from GeneWise gcaggctcatttctatcgaggattttggcttgcctcctcttttcccacaggaccgtgagctgcggacctgaggagttggagggtctgggttcctcactgttgttgagaagtggaaaggaagtctgatactat #### Capn1_ID1356_20 --> 2 - 0 Original Alignment ggTTTTTCAAACTTCTGGACACAGACCTGGATGGT-GTTGTGACCTTTGATCTATTTAAG ttactgcctttatgtgtggttgtctgccctttgtgtgtgtgtatcctcagggTTTTCCAAACTACTAGACCGAGGCCTGGATGGTCGTTGTTACCTTTGATCTCTTTAGGgtacacgagtaatccaccccactcaactacctacctgggggagctgccac Alignment from CESAR ggTTTTTCAAACTTCTGGACACAGACCTGGATGGT-GTTGTGACCTTTGATCTATTTAAG ttactgcctttatgtgtggttgtctgccctttgtgtgtgtgtatcctcagggTTTTCCAAACTACTAGACCGAGGCCTGGATGGTCGTTGTTACCTTTGATCTCTTTAGGgtacacgagtaatccaccccactcaactacctacctgggggagctgccac Alignment from Spaln_aa2Genome GGTTTTTCAAACTTCTGGACACAGACCTGGATGGT-GTTGTGACCTTTGATCTATTTAAG ttactgcctttatgtgtggttgtctgccctttgtgtgtgtgtatcctcagGGTTTTCCAAACTACTAGACCGAGGCCTGGATGGTcGTTGTTACCTTTGATCTCTTTAGGgtacacgagtaatccaccccactcaactacctacctgggggagctgccac Alignment from Spaln_nt2Genome GGTTTTTCAAACTTCTGGACACAGACCTGGATGGT-GTTGTGACCTTTGATCTATTTAAG ttactgcctttatgtgtggttgtctgccctttgtgtgtgtgtatcctcagGGTTTTCCAAACTACTAGACCGAGGCCTGGATGGTCGTTGTTACCTTTGATCTCTTTAGGgtacacgagtaatccaccccactcaactacctacctgggggagctgccac Alignment from Pairagon GGTTTTTCAAACTTCTGGACACAGACCTGGATGGT-GTTGTGACCTTTGATCTATTTAAG ttactgcctttatgtgtggttgtctgccctttgtgtgtgtgtatcctcagGGTTTTCCAAACTACTAGACCGAGGCCTGGATGGTCGTTGTTACCTTTGATCTCTTTAGGgtacacgagtaatccaccccactcaactacctacctgggggagctgccac Alignment from Exonerate_protein2genome GGTTTTTCAAACTTCTGGACACAGACCTGGATGGT-GTTGTGACCTTTGATCTATTTAAG ttactgcctttatgtgtggttgtctgccctttgtgtgtgtgtatcctcagGGTTTTCCAAACTACTAGACCGAGGCCTGGATGGTCGTTGTTACCTTTGATCTCTTTAGGgtacacgagtaatccaccccactcaactacctacctgggggagctgccac Alignment from Exonerate_coding2genome ttactgcctttatgtgtggttgtctgccctttgtgtgtgtgtatcctcagggttttccaaactactagaccgaggcctggatggtcgttgttacctttgatctctttagggtacacgagtaatccaccccactcaactacctacctgggggagctgccac Alignment from GeneWise ttactgcctttatgtgtggttgtctgccctttgtgtgtgtgtatcctcagggttttccaaactactagaccgaggcctggatggtcgttgttacctttgatctctttagggtacacgagtaatccaccccactcaactacctacctgggggagctgccac #### Carns1_ID387_5 --> 0 - 1 Original Alignment GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCA-CCTGTCCGGCTGCCCTTACCAg gcGGTCCTGCACCTGG gagtacatgaggtagtggttgtgtaaagctaattgtcccataatttatagGTGGCAGCGAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTTTACATCTACAGGTAAAACCATCCACAGTGGTGACGATGGTGCTAGGATTGCTGAAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGCCAATTTGTCCTCCCTGTCCGGCTGCCCTTGCCAggtaaggtgtactagcccccactgtgtgcacacaggaGGTCCTCCACCTGG Alignment from CESAR GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCA-CCTGTCCGGCTGCCCTTACCAg gcGGTCCTGCACCTGG gagtacatgaggtagtggttgtgtaaagctaattgtcccataatttatagGTGGCAGCGAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTTTACATCTACAGGTAAAACCATCCACAGTGGTGACGATGGTGCTAGGATTGCTGAAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGCCAATTTGTCCTCCCTGTCCGGCTGCCCTTGCCAggtaaggtgtactttgttctgtttgtctctgtcaggaGGTCCTCCACCTGG Alignment from Spaln_aa2Genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCA-CCTGTCCGGCTGCCCTTACCAG GCGGTCCTGCACCTGG gagtacatgaggtagtggttgtgtaaagctaattgtcccataatttatagGTGGCAGCGAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTTTACATCTACAGGTAAAACCATCCACAGTGGTGACGATGGTGCTAGGATTGCTGAAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGCCAATTTGTCCTcCCTGTCCGGCTGCCCTTGCCAGgtaaggtgtactagcccccactgtgtgcacacagGAGGTCCTCCACCTGG Alignment from Spaln_nt2Genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACC-TGTCCGGCTGCCCTTACCAG GCGGTCCTGCACCTGG gagtacatgaggtagtggttgtgtaaagctaattgtcccataatttatagGTGGCAGCGAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTTTACATCTACAGGTAAAACCATCCACAGTGGTGACGATGGTGCTAGGATTGCTGAAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGCCAATTTGTCCTCCCTGTCCGGCTGCCCTTGCCAGgtaaggtgtactagcccccactgtgtgcacacagGAGGTCCTCCACCTGG Alignment from Pairagon GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTG-CCCACCTGTCCGGCTGCCCTTACCAG GCGGTCCTGCACCTGG gagtacatgaggtagtggttgtgtaaagctaattgtcccataatttatagGTGGCAGCGAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTTTACATCTACAGGTAAAACCATCCACAGTGGTGACGATGGTGCTAGGATTGCTGAAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGCCAATTTGTCCTCCCTGTCCGGCTGCCCTTGCCAGgtaaggtgtactagcccccactgtgtgcacacagGAGGTCCTCCACCTGG Alignment from Exonerate_protein2genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCA-CCTGTCCGGCTGCCCTTACCAG GCGGTCCTGCACCTGG gagtacatgaggtagtggttgtgtaaagctaattgtcccataatttatagGTGGCAGCGAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTTTACATCTACAGGTAAAACCATCCACAGTGGTGACGATGGTGCTAGGATTGCTGAAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGCCAATTTGTCCTCCCTGTCCGGCTGCCCTTGCCAGgtaaggtgtactagcccccactgtgtgcacacagGAGGTCCTCCACCTGG Alignment from Exonerate_coding2genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCA-CCTGTCCGGCTGCCCTTACCAG GCGGTCCTGCACCTGG gagtacatgaggtagtggttgtgtaaagctaattgtcccataatttatagGTGGCAGCGAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTTTACATCTACAGGTAAAACCATCCACAGTGGTGACGATGGTGCTAGGATTGCTGAAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGCCAATTTGTCCTCCCTGTCCGGCTGCCCTTGCCAGgtaaggtgtactagcccccactgtgtgcacacagGAGGTCCTCCACCTGG Alignment from GeneWise GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTC--CGGCTGCCCTTA---------------------------------CCAGGCGGTCCTGCACCTGG gagtacatgaggtagtggttgtgtaaagctaattgtcccataatttatagGTGGCAGCGAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTTTACATCTACAGGTAAAACCATCCACAGTGGTGACGATGGTGCTAGGATTGCTGAAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGCCAATTTGTCCTCCCTGTCCGGCTGCCCTTGCCAGGTAAGGTGTACTAGCCCCCACTGTGTGCACACAGGAGGTCCTCCACCTGG #### Catsper1_ID927_4 --> 2 - 2 Original Alignment acTTCTTCATCATGGTCATGGCAGTGCTG-GACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTC------CGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCag ggctttttttggactggcacacatcctaatgcccccccttcttttttcagacTTTTTTATTATGGTTATGGCA---CTGCGGCTTTGTGTTACTGCAGTTCAATTCACTCTCATACTCATTTTACAACCACAGCCTGTTCCTGTTCCACATTCTCAAAGTTTTCAAAAGTATGAGGGCCCTGAGGGCCATACGGGTTCTTAGGAGGCTCaggtaagtagcattaccccactcatgttcatggagagcactcaacaaagaga Alignment from CESAR acTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGC------CTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCag ggctttttttggactggcacacatcctaatgcccccccttcttttttcagacTTTTTTATTATGGTTATGGCACTG--CGGCTTTGTGTTACTGCAGTTCAATTCACTCTCATACTCATTTTACAACCACAGCCTGTTCCTGTTCCACATTCTCAAAGTTTTCAAAAGTATGAGGGCCCTGAGGGCCATACGGGTTCTTAGGAGGCTCaggtaagtagcattaccccactcatgttcatggagagcactcaacaaagaga Alignment from Spaln_aa2Genome ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGC------CTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG ggctttttttggactggcacacatcctaatgcccccccttcttttttcagACTTTTTTATTATGGTTATGGCACTGC--GGCTTTGTGTTACTGCAGTTCAATTCACTCTCATACTCATTTTACAACCACAGCCTGTTCCTGTTCCACATTCTCAAAGTTTTCAAAAGTATGAGGGCCCTGAGGGCCATACGGGTTCTTAGGAGGCTCAGgtaagtagcattaccccactcatgttcatggagagcactcaacaaagaga Alignment from Spaln_nt2Genome ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAG------CCTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG ggctttttttggactggcacacatcctaatgcccccccttcttttttcagACTTTTTTATTATGGTTATGGCACTGC--GGCTTTGTGTTACTGCAGTTCAATTCACTCTCATACTCATTTTACAACCACAGCCTGTTCCTGTTCCACATTCTCAAAGTTTTCAAAAGTATGAGGGCCCTGAGGGCCATACGGGTTCTTAGGAGGCTCAGgtaagtagcattaccccactcatgttcatggagagcactcaacaaagaga Alignment from Pairagon ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGCCTGTTCCGG------ATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG ggctttttttggactggcacacatcctaatgcccccccttcttttttcagACTTTTTTATTATGGTTATGGCACTGC--GGCTTTGTGTTACTGCAGTTCAATTCACTCTCATACTCATTTTACAACCACAGCCTGTTCCTGTTCCACATTCTCAAAGTTTTCAAAAGTATGAGGGCCCTGAGGGCCATACGGGTTCTTAGGAGGCTCAGgtaagtagcattaccccactcatgttcatggagagcactcaacaaagaga Alignment from Exonerate_protein2genome ACTTCTTCATCATGGTCATGGCAGTGCTG-GACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGC------CTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG ggctttttttggactggcacacatcctaatgcccccccttcttttttcagACTTTTTTATTATGGTTATGGCA---CTGCGGCTTTGTGTTACTGCAGTTCAATTCACTCTCATACTCATTTTACAACCACAGCCTGTTCCTGTTCCACATTCTCAAAGTTTTCAAAAGTATGAGGGCCCTGAGGGCCATACGGGTTCTTAGGAGGCTCAGgtaagtagcattaccccactcatgttcatggagagcactcaacaaagaga Alignment from Exonerate_coding2genome ACTTCTTCATCATGGTCATGGCAGTGCTG-GACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGC------CTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG ggctttttttggactggcacacatcctaatgcccccccttcttttttcagACTTTTTTATTATGGTTATGGCA---CTGCGGCTTTGTGTTACTGCAGTTCAATTCACTCTCATACTCATTTTACAACCACAGCCTGTTCCTGTTCCACATTCTCAAAGTTTTCAAAAGTATGAGGGCCCTGAGGGCCATACGGGTTCTTAGGAGGCTCAGgtaagtagcattaccccactcatgttcatggagagcactcaacaaagaga Alignment from GeneWise ACTTCTTCATCATGGTCATGGCAGTGCTGGACTTTGTGCTCCTTCAGATAAACTCGCTCTCATATTCATTCTACAACCACAGC------CTGTTCCGGATTCTCAAAGTCTTCAAAAGTATGCGGGCCCTGAGGGCCATCCGGGTTCTTCGGAGGCTCAG ggctttttttggactggcacacatcctaatgcccccccttcttttttcagACTTTTTTATTATGGTTATGGCACTGC--GGCTTTGTGTTACTGCAGTTCAATTCACTCTCATACTCATTTTACAACCACAGCCTGTTCCTGTTCCACATTCTCAAAGTTTTCAAAAGTATGAGGGCCCTGAGGGCCATACGGGTTCTTAGGAGGCTCAGgtaagtagcattaccccactcatgttcatggagagcactcaacaaagaga #### Catsper1_ID928_5 --> 1 - 1 Original Alignment cATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCC-ATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCt ctccccttgcctcattactaacttggctaaaaaacactttaacttttcagtATCTTGACTAGTGTCCATGAAGTAGCTGGAACCCTTAGTGGGTCATTACCATCACATCACAGCCATCCTCACCCTCATGTTCACCTGCCTCtgtatggtgtacaacagagattaggcaattactctgagtaggtcagatggt Alignment from CESAR cATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCC-ATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCt ctccccttgcctcattactaacttggctaaaaaacactttaacttttcagtATCTTGACTAGTGTCCATGAAGTAGCTGGAACCCTTAGTGGGTCATTACCATCACATCACAGCCATCCTCACCCTCATGTTCACCTGCCTCtgtatggtgtacaacagagattaggcaattactctgagtaggtcagatggt Alignment from Spaln_aa2Genome CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCC-ATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ctccccttgcctcattactaacttggctaaaaaacactttaacttttcagTATCTTGACTAGTGTCCATGAAGTAGCTGGAACCCTTAGTGGGTCATTACCATCAcATCACAGCCATCCTCACCCTCATGTTCACCTGCCTCTgtatggtgtacaacagagattaggcaattactctgagtaggtcagatggt Alignment from Spaln_nt2Genome CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATC-CATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ctccccttgcctcattactaacttggctaaaaaacactttaacttttcagTATCTTGACTAGTGTCCATGAAGTAGCTGGAACCCTTAGTGGGTCATTACCATCACATCACAGCCATCCTCACCCTCATGTTCACCTGCCTCTgtatggtgtacaacagagattaggcaattactctgagtaggtcagatggt Alignment from Pairagon CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATC-CATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ctccccttgcctcattactaacttggctaaaaaacactttaacttttcagTATCTTGACTAGTGTCCATGAAGTAGCTGGAACCCTTAGTGGGTCATTACCATCACATCACAGCCATCCTCACCCTCATGTTCACCTGCCTCTgtatggtgtacaacagagattaggcaattactctgagtaggtcagatggt Alignment from Exonerate_protein2genome CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCC-ATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ctccccttgcctcattactaacttggctaaaaaacactttaacttttcagTATCTTGACTAGTGTCCATGAAGTAGCTGGAACCCTTAGTGGGTCATTACCATCACATCACAGCCATCCTCACCCTCATGTTCACCTGCCTCTgtatggtgtacaacagagattaggcaattactctgagtaggtcagatggt Alignment from Exonerate_coding2genome CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCC-ATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ctccccttgcctcattactaacttggctaaaaaacactttaacttttcagTATCTTGACTAGTGTCCATGAAGTAGCTGGAACCCTTAGTGGGTCATTACCATCACATCACAGCCATCCTCACCCTCATGTTCACCTGCCTCTgtatggtgtacaacagagattaggcaattactctgagtaggtcagatggt Alignment from GeneWise CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCA-TCCATCACGGCCATCCTCACCCTCATGTTTACCTGCCTCT ctccccttgcctcattactaacttggctaaaaaacactttaacttttcagTATCTTGACTAGTGTCCATGAAGTAGCTGGAACCCTTAGTGGGTCATTACCATCACATCACAGCCATCCTCACCCTCATGTTCACCTGCCTCTgtatggtgtacaacagagattaggcaattactctgagtaggtcagatggt #### Catsper1_ID929_6 --> 2 - 1 Original Alignment tcCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGAC-GACTGGTCCCTCATCTACATAGACAACAGGGCCCAAg gaaatctaatctggttacagtgataatgtctgtggccggttgcctttcagtcCTCTTCTCTGTGGTACTCCGAGCACTCTTTCAGGATTCAGACCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCATGATGCTCACCCTGGATCGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAggtaagctaacctaaggctctagggtccacatagcataccaatagcacaga Alignment from CESAR tcCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGAC-GACTGGTCCCTCATCTACATAGACAACAGGGCCCAAg gaaatctaatctggttacagtgataatgtctgtggccggttgcctttcagtcCTCTTCTCTGTGGTACTCCGAGCACTCTTTCAGGATTCAGACCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCATGATGCTCACCCTGGATCGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAggtaagctaacctaaggctctagggtccacatagcataccaatagcacaga Alignment from Spaln_aa2Genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGAC-GACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctggttacagtgataatgtctgtggccggttgcctttcagTCCTCTTCTCTGTGGTACTCCGAGCACTCTTTCAGGATTCAGACCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCATGATGCTCACCCTGGATcGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtaagctaacctaaggctctagggtccacatagcataccaatagcacaga Alignment from Spaln_nt2Genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGA-CGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctggttacagtgataatgtctgtggccggttgcctttcagTCCTCTTCTCTGTGGTACTCCGAGCACTCTTTCAGGATTCAGACCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCATGATGCTCACCCTGGATCGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtaagctaacctaaggctctagggtccacatagcataccaatagcacaga Alignment from Pairagon TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGA-CGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctggttacagtgataatgtctgtggccggttgcctttcagTCCTCTTCTCTGTGGTACTCCGAGCACTCTTTCAGGATTCAGACCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCATGATGCTCACCCTGGATCGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtaagctaacctaaggctctagggtccacatagcataccaatagcacaga Alignment from Exonerate_protein2genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGAC-GACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctggttacagtgataatgtctgtggccggttgcctttcagTCCTCTTCTCTGTGGTACTCCGAGCACTCTTTCAGGATTCAGACCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCATGATGCTCACCCTGGATCGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtaagctaacctaaggctctagggtccacatagcataccaatagcacaga Alignment from Exonerate_coding2genome TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTGGAC-GACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctggttacagtgataatgtctgtggccggttgcctttcagTCCTCTTCTCTGTGGTACTCCGAGCACTCTTTCAGGATTCAGACCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCATGATGCTCACCCTGGATCGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtaagctaacctaaggctctagggtccacatagcataccaatagcacaga Alignment from GeneWise TCCTCTTCTCTGTGGTTCTCCGAGCACTGTTTCAGGACTCAGACCCCAAGCGCTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCACCATGCTCACCCTG-GACGACTGGTCCCTCATCTACATAGACAACAGGGCCCAAG gaaatctaatctggttacagtgataatgtctgtggccggttgcctttcagTCCTCTTCTCTGTGGTACTCCGAGCACTCTTTCAGGATTCAGACCCCAAGCGTTTCCAGAACATCTTTACCACACTCTTCACCCTGTTCATGATGCTCACCCTGGATCGACTGGTCCCTTATCTACATAGAGAACAGGGCCCAAGgtaagctaacctaaggctctagggtccacatagcataccaatagcacaga #### Catsper1_ID930_7 --> 2 - 2 Original Alignment gcGCCTGGTACATCATACCGATCCTC-ATGATTTACATTGTCATCCAGTACTTCATCTTCCTCaa cacagaaagagttggttacttctgctatcccatccggacctgttttccagctGCCTGGTACATCATACCAATCCTCCATGATCTACATTGTTATCCAATACTTTATCTTCCTCaagtaagacattgacctgttccaatgtccacccactaagtatttagaggaca Alignment from CESAR gcGCCTGGTACATCATACCGATCCTC-ATGATTTACATTGTCATCCAGTACTTCATCTTCCTCaa cacagaaagagttggttacttctgctatcccatccggacctgttttccagctGCCTGGTACATCATACCAATCCTCCATGATCTACATTGTTATCCAATACTTTATCTTCCTCaagtaagacattgacctgttccaatgtccacccactaagtatttagaggaca Alignment from Spaln_aa2Genome GCGCCTGGTACATCATACCGATCCTC-ATGATTTACATTGTCATCCAGTACTTCATCTTCCTCAA cacagaaagagttggttacttctgctatcccatccggacctgttttccagCTGCCTGGTACATCATACCAATCCTCcATGATCTACATTGTTATCCAATACTTTATCTTCCTCAAgtaagacattgacctgttccaatgtccacccactaagtatttagaggaca Alignment from Spaln_nt2Genome GCGCCTGGTACATCATACCGATCCT-CATGATTTACATTGTCATCCAGTACTTCATCTTCCTCAA cacagaaagagttggttacttctgctatcccatccggacctgttttccagCTGCCTGGTACATCATACCAATCCTCCATGATCTACATTGTTATCCAATACTTTATCTTCCTCAAgtaagacattgacctgttccaatgtccacccactaagtatttagaggaca Alignment from Pairagon GCGCCTGGTACATCATACCGATCCT-CATGATTTACATTGTCATCCAGTACTTCATCTTCCTCAA cacagaaagagttggttacttctgctatcccatccggacctgttttccagCTGCCTGGTACATCATACCAATCCTCCATGATCTACATTGTTATCCAATACTTTATCTTCCTCAAgtaagacattgacctgttccaatgtccacccactaagtatttagaggaca Alignment from Exonerate_protein2genome GCGCCTGGTACATCATACCGATCCTC-ATGATTTACATTGTCATCCAGTACTTCATCTTCCTCAA cacagaaagagttggttacttctgctatcccatccggacctgttttccagCTGCCTGGTACATCATACCAATCCTCCATGATCTACATTGTTATCCAATACTTTATCTTCCTCAAgtaagacattgacctgttccaatgtccacccactaagtatttagaggaca Alignment from Exonerate_coding2genome cacagaaagagttggttacttctgctatcccatccggacctgttttccagctgcctggtacatcataccaatcctccatgatctacattgttatccaatactttatcttcctcaagtaagacattgacctgttccaatgtccacccactaagtatttagaggaca Alignment from GeneWise GCGCCTGGTACATCATACCGATC-CTCATGATTTACATTGTCATCCAGTACTTCATCTTCCTCAA cacagaaagagttggttacttctgctatcccatccggacctgttttccagCTGCCTGGTACATCATACCAATCCTCCATGATCTACATTGTTATCCAATACTTTATCTTCCTCAAgtaagacattgacctgttccaatgtccacccactaagtatttagaggaca #### Catsper1_ID931_8 --> 1 - 0 Original Alignment cCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGC-CTAGAGAAAGTGAAGCTGGAG cttccttggtccaccatcccatttaggcgtatttgggattgtttccacagcCTAGTGATTGCAGCTCTAGTAGATAACTTCCTGATGGTACTGCTCAAAGGCCCTGGAGAAAGTGAAGCTGGAAgtaaatcgccacattgggtggtgatagttagggttggaagcacatacacc Alignment from CESAR cCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGC-CTAGAGAAAGTGAAGCTGGAG cttccttggtccaccatcccatttaggcgtatttgggattgtttccacagcCTAGTGATTGCAGCTCTAGTAGATAACTTCCTGATGGTACTGCTCAAAGGCCCTGGAGAAAGTGAAGCTGGAAgtaaatcgccacattgggtggtgatagttagggttggaagcacatacacc Alignment from Spaln_aa2Genome CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGC-CTAGAGAAAGTGAAGCTGGAG cttccttggtccaccatcccatttaggcgtatttgggattgtttccacagCCTAGTGATTGCAGCTCTAGTAGATAACTTCCTGATGGTACTGCTCAAAGGCcCTGGAGAAAGTGAAGCTGGAAgtaaatcgccacattgggtggtgatagttagggttggaagcacatacacc Alignment from Spaln_nt2Genome CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCC-TAGAGAAAGTGAAGCTGGAG cttccttggtccaccatcccatttaggcgtatttgggattgtttccacagCCTAGTGATTGCAGCTCTAGTAGATAACTTCCTGATGGTACTGCTCAAAGGCCCTGGAGAAAGTGAAGCTGGAAgtaaatcgccacattgggtggtgatagttagggttggaagcacatacacc Alignment from Pairagon CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGG-CCTAGAGAAAGTGAAGCTGGAG cttccttggtccaccatcccatttaggcgtatttgggattgtttccacagCCTAGTGATTGCAGCTCTAGTAGATAACTTCCTGATGGTACTGCTCAAAGGCCCTGGAGAAAGTGAAGCTGGAAgtaaatcgccacattgggtggtgatagttagggttggaagcacatacacc Alignment from Exonerate_protein2genome CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGC-CTAGAGAAAGTGAAGCTGGAG cttccttggtccaccatcccatttaggcgtatttgggattgtttccacagCCTAGTGATTGCAGCTCTAGTAGATAACTTCCTGATGGTACTGCTCAAAGGCCCTGGAGAAAGTGAAGCTGGAAgtaaatcgccacattgggtggtgatagttagggttggaagcacatacacc Alignment from Exonerate_coding2genome CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGC-CTAGAGAAAGTGAAGCTGGAG cttccttggtccaccatcccatttaggcgtatttgggattgtttccacagCCTAGTGATTGCAGCTCTAGTAGATAACTTCCTGATGGTACTGCTCAAAGGCCCTGGAGAAAGTGAAGCTGGAAgtaaatcgccacattgggtggtgatagttagggttggaagcacatacacc Alignment from GeneWise CCTGGTGATTGCTGTCCTGGTAGATAACTTCCAGATGGCGTTGCTCAAAGGCCTAGAGAAA- cttccttggtccaccatcccatttaggcgtatttgggattgtttccacagCCTAGTGATTGCAGCTCTAGTAGATAACTTCCTGATGGTACTGCTCAAAGGCCCTGGAGAAAgtgaagctggaagtaaatcgccacattgggtggtgatagttagggttggaagcacatacacc #### Ccdc88b_ID1827_22 --> 0 - 2 Original Alignment CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGC-GACCATCTGCATCGAGAGCAGCGAGAGTACct gGACCAGC ctggacagtcttaggtctggtgttcaacattttaattctgtctttttcagCTTCTAACACAGCTCCGTACTGTACAAGAGGAGGAGAACAGGCAGCTTTTAGCAGAGGTGAAGGCTTTAAGTCGAACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGAGT---CGACCCTCTGCACCGTGAGCAGCCAGAGTATctgtgagtacacttagggtcagaactctgaacttcctcccctaggGACCAAC Alignment from CESAR CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACct gGACCAGC ctggacagtcttaggtctggtgttcaacattttaattctgtctttttcagCTTCTAACACAGCTCCGTACTGTACAAGAGGAGGAGAACAGGCAGCTTTTAGCAGAGGTGAAGGCTTTAAGTCGAACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGAGTC--GACCCTCTGCACCGTGAGCAGCCAGAGTATctgtgagtacacttagggtcagactgacactattctataactaggGACCAAC Alignment from Spaln_aa2Genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GGACCAGC ctggacagtcttaggtctggtgttcaacattttaattctgtctttttcagCTTCTAACACAGCTCCGTACTGTACAAGAGGAGGAGAACAGGCAGCTTTTAGCAGAGGTGAAGGCTTTAAGTCGAACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGAGTC--GACCCTCTGCACCGTGAGCAGCCAGAGTATCTgtgagtacacttagggtcagaactctgaacttcctcccctagGGACCAAC Alignment from Spaln_nt2Genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GGACCAGC ctggacagtcttaggtctggtgttcaacattttaattctgtctttttcagCTTCTAACACAGCTCCGTACTGTACAAGAGGAGGAGAACAGGCAGCTTTTAGCAGAGGTGAAGGCTTTAAGTCGAACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGAGT--CGACCCTCTGCACCGTGAGCAGCCAGAGTATCTgtgagtacacttagggtcagaactctgaacttcctcccctagGGACCAAC Alignment from Pairagon CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GGACCAGC ctggacagtcttaggtctggtgttcaacattttaattctgtctttttcagCTTCTAACACAGCTCCGTACTGTACAAGAGGAGGAGAACAGGCAGCTTTTAGCAGAGGTGAAGGCTTTAAGTCGAACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGAGT--CGACCCTCTGCACCGTGAGCAGCCAGAGTATCTgtgagtacacttagggtcagaactctgaacttcctcccctagGGACCAAC Alignment from Exonerate_protein2genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGC-CGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GGACCAGC ctggacagtcttaggtctggtgttcaacattttaattctgtctttttcagCTTCTAACACAGCTCCGTACTGTACAAGAGGAGGAGAACAGGCAGCTTTTAGCAGAGGTGAAGGCTTTAAGTCGAACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGAGTC---GACCCTCTGCACCGTGAGCAGCCAGAGTATCTgtgagtacacttagggtcagaactctgaacttcctcccctagGGACCAAC Alignment from Exonerate_coding2genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGC-CGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GGACCAGC ctggacagtcttaggtctggtgttcaacattttaattctgtctttttcagCTTCTAACACAGCTCCGTACTGTACAAGAGGAGGAGAACAGGCAGCTTTTAGCAGAGGTGAAGGCTTTAAGTCGAACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGAGTC---GACCCTCTGCACCGTGAGCAGCCAGAGTATCTgtgagtacacttagggtcagaactctgaacttcctcccctagGGACCAAC Alignment from GeneWise CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GGACCAGC ctggacagtcttaggtctggtgttcaacattttaattctgtctttttcagCTTCTAACACAGCTCCGTACTGTACAAGAGGAGGAGAACAGGCAGCTTTTAGCAGAGGTGAAGGCTTTAAGTCGAACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGAGTCGACCCT--CTGCACCGTGAGCAGCCAGAGTATCTgtgagtacacttagggtcagaactctgaacttcctcccctagGGACCAAC #### Ccdc88b_ID1828_21 --> 1 - 0 Original Alignment aGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGT-GAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtgaccattcttcatttcagtatttaaattgtataattttgctcccttagaGCCCAAATGTTACTGGCAGAGGTGTCACGAGGGTGTGGTGAGATCCAAGGACGAACGTGGGGAGCTGTGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGGGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGTGCGGGAGTCCAACCAACAATTGGACCTGAGTGCATGTCACCTGACAACTCAGTGCGAAgtaagttacaacagtgtgtgtatgaggcctcccacactaatggtctctgc Alignment from CESAR aGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGT-GAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtgaccattcttcatttcagtatttaaattgtataattttgctcccttagaGCCCAAATGTTACTGGCAGAGGTGTCACGAGGGTGTGGTGAGATCCAAGGACGAACGTGGGGAGCTGTGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGGGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGTGCGGGAGTCCAACCAACAATTGGACCTGAGTGCATGTCACCTGACAACTCAGTGCGAAgtaagttacaacagtgtgtgtatgaggcctcccacactaatggtctctgc Alignment from Spaln_aa2Genome AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGT-GAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTG------CGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtgaccattcttcatttcagtatttaaattgtataattttgctcccttagAGCCCAAATGTTACTGGCAGAGGTGTCACGAGGGTGTGGTGAGATCCAAGGAcGAACGTGGGGAGCTGTGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGGGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGTGCGGGAGTCCAACCAACAATTGGACCTGAGTGCATGTCACCTGACAACTCAGTGCGAAgtaagttacaacagtgtgtgtatgaggcctcccacactaatggtctctgc Alignment from Spaln_nt2Genome AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGT-GAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtgaccattcttcatttcagtatttaaattgtataattttgctcccttagAGCCCAAATGTTACTGGCAGAGGTGTCACGAGGGTGTGGTGAGATCCAAGGACGAACGTGGGGAGCTGTGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGGGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGTGCGGGAGTCCAACCAACAATTGGACCTGAGTGCATGTCACCTGACAACTCAGTGCGAAgtaagttacaacagtgtgtgtatgaggcctcccacactaatggtctctgc Alignment from Pairagon AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGG-TGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtgaccattcttcatttcagtatttaaattgtataattttgctcccttagAGCCCAAATGTTACTGGCAGAGGTGTCACGAGGGTGTGGTGAGATCCAAGGACGAACGTGGGGAGCTGTGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGGGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGTGCGGGAGTCCAACCAACAATTGGACCTGAGTGCATGTCACCTGACAACTCAGTGCGAAgtaagttacaacagtgtgtgtatgaggcctcccacactaatggtctctgc Alignment from Exonerate_protein2genome AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGT-GAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTG------CGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtgaccattcttcatttcagtatttaaattgtataattttgctcccttagAGCCCAAATGTTACTGGCAGAGGTGTCACGAGGGTGTGGTGAGATCCAAGGACGAACGTGGGGAGCTGTGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGGGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGTGCGGGAGTCCAACCAACAATTGGACCTGAGTGCATGTCACCTGACAACTCAGTGCGAAgtaagttacaacagtgtgtgtatgaggcctcccacactaatggtctctgc Alignment from Exonerate_coding2genome AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGT-GAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTG------CGTGAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtgaccattcttcatttcagtatttaaattgtataattttgctcccttagAGCCCAAATGTTACTGGCAGAGGTGTCACGAGGGTGTGGTGAGATCCAAGGACGAACGTGGGGAGCTGTGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGGGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGTGCGGGAGTCCAACCAACAATTGGACCTGAGTGCATGTCACCTGACAACTCAGTGCGAAgtaagttacaacagtgtgtgtatgaggcctcccacactaatggtctctgc Alignment from GeneWise AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGT-GAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACCACACAGTGTGAG gtgaccattcttcatttcagtatttaaattgtataattttgctcccttagAGCCCAAATGTTACTGGCAGAGGTGTCACGAGGGTGTGGTGAGATCCAAGGACGAACGTGGGGAGCTGTGGGGCCGGCTGGCAAGGCTGGAACTGGAGCGGGCACAACTTGAGATCCAGAGCCAGCAGCTGCGTGTGCGGGAGTCCAACCAACAATTGGACCTGAGTGCATGTCACCTGACAACTCAGTGCGAAgtaagttacaacagtgtgtgtatgaggcctcccacactaatggtctctgc #### Ccdc88b_ID1832_17 --> 0 - 0 Original Alignment CTGCGCCAGTACCCGGTGGACCTGGCAACT-GGGGCGCGA---GCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT cagggcagaaatgcttcaactacctgttcgtttgctctgttaacctgcagCTGCATCAGTGCCCGGTG---CTT---GCTCGGGGCACGGCGGGATGGCCCTTGGGCCGTGGAGACACAAAATGGGCGGCTCATTGTAGTAGAGCAAAATgtgagggagaaggtgggggcttacccaaggggtaacagggctcacaactt Alignment from CESAR CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCG---CGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT cagggcagaaatgcttcaactacctgttcgtttgctctgttaacctgcagCTGCATCAGTGCCCGGTG---CTTGCT--CGGGGCACGGCGGGATGGCCCTTGGGCCGTGGAGACACAAAATGGGCGGCTCATTGTAGTAGAGCAAAATgtgagggagaaggtgggggcttacccaaggggtaacagggctcacaactt Alignment from Spaln_aa2Genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCG-CGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT cagggcagaaatgcttcaactacctgttcgtttgctctgttaacctgcagCTGCATCAGTGCCCGGTG---CTTGCTCGGGGCACGgCGGGATGGCCCTTGGGCCGTGGAGACACAAAATGGGCGGCTCATTGTAGTAGAGCAAAATgtgagggagaaggtgggggcttacccaaggggtaacagggctcacaactt Alignment from Spaln_nt2Genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCG-CGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT cagggcagaaatgcttcaactacctgttcgtttgctctgttaacctgcagCTGCATCAGTGCCCGGTG---CTTGCTCGGGGCACGGCGGGATGGCCCTTGGGCCGTGGAGACACAAAATGGGCGGCTCATTGTAGTAGAGCAAAATgtgagggagaaggtgggggcttacccaaggggtaacagggctcacaactt Alignment from Pairagon CTGCGCCAGTACCCGGTGGACCTGGCAACT-----GGGGC---GCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT cagggcagaaatgcttcaactacctgttcgtttgctctgttaacctgcagCTGCATCAGTGCCCGGTG----------CTTGCTCGGGGCACGGCGGGATGGCCCTTGGGCCGTGGAGACACAAAATGGGCGGCTCATTGTAGTAGAGCAAAATgtgagggagaaggtgggggcttacccaaggggtaacagggctcacaactt Alignment from Exonerate_protein2genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCG-CGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT cagggcagaaatgcttcaactacctgttcgtttgctctgttaacctgcagCTGCATCAGTGCCCGGTG---CTTGCTCGGGGCACGGCGGGATGGCCCTTGGGCCGTGGAGACACAAAATGGGCGGCTCATTGTAGTAGAGCAAAATgtgagggagaaggtgggggcttacccaaggggtaacagggctcacaactt Alignment from Exonerate_coding2genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCG-CGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT cagggcagaaatgcttcaactacctgttcgtttgctctgttaacctgcagCTGCATCAGTGCCCGGTG---CTTGCTCGGGGCACGGCGGGATGGCCCTTGGGCCGTGGAGACACAAAATGGGCGGCTCATTGTAGTAGAGCAAAATgtgagggagaaggtgggggcttacccaaggggtaacagggctcacaactt Alignment from GeneWise CTGCGCCAGTACCCGGTGGACCTGGCAACTGGG-GCGCGAGCTGGGCCTCGGACTGTGGAGACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT cagggcagaaatgcttcaactacctgttcgtttgctctgttaacctgcagCTGCATCAGTGCCCGGTG---CTTGCTCGGGGCACGGCGGGATGGCCCTTGGGCCGTGGAGACACAAAATGGGCGGCTCATTGTAGTAGAGCAAAATgtgagggagaaggtgggggcttacccaaggggtaacagggctcacaactt #### Ccdc88b_ID1836_13 --> 2 - 0 Original Alignment ccTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTG-AGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtgggagaggatgaacagatagaagctttggtcgctctgttcacagcaTCCCTTCCTGGGCCAGCACCTTCATTGCAAGATGAGGTGCAGGAAAGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCAA---CATATG------GCACAGCTTGGCAGCCAGgtaagttcctctgctggtattcttattccctgtatgtcccttgtttgcaa Alignment from CESAR ccTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAA-GCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtgggagaggatgaacagatagaagctttggtcgctctgttcacagcaTCCCTTCCTGGGCCAGCACCTTCATTGCAAGATGAGGTGCAGGAAAGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCAA---CATATG------GCACAGCTTGGCAGCCAGgtaagttcctctgctggtattcttattccctgtatgtcccttgtttgcaa Alignment from Spaln_aa2Genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAA-GCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtgggagaggatgaacagatagaagctttggtcgctctgttcacagCATCCCTTCCTGGGCCAGCACCTTCATTGCAAGATGAGGTGCAGGAAaGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCAA---CATATG------GCACAGCTTGGCAGCCAGgtaagttcctctgctggtattcttattccctgtatgtcccttgtttgcaa Alignment from Spaln_nt2Genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTG-AGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtgggagaggatgaacagatagaagctttggtcgctctgttcacagCATCCCTTCCTGGGCCAGCACCTTCATTGCAAGATGAGGTGCAGGAAAGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCA---ACATAT------GGCACAGCTTGGCAGCCAGgtaagttcctctgctggtattcttattccctgtatgtcccttgtttgcaa Alignment from Pairagon CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTG-AGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtgggagaggatgaacagatagaagctttggtcgctctgttcacagCATCCCTTCCTGGGCCAGCACCTTCATTGCAAGATGAGGTGCAGGAAAGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCAA---------CATATGGCACAGCTTGGCAGCCAGgtaagttcctctgctggtattcttattccctgtatgtcccttgtttgcaa Alignment from Exonerate_protein2genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTG-AGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtgggagaggatgaacagatagaagctttggtcgctctgttcacagCATCCCTTCCTGGGCCAGCACCTTCATTGCAAGATGAGGTGCAGGAAAGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCAA---------CATATGGCACAGCTTGGCAGCCAGgtaagttcctctgctggtattcttattccctgtatgtcccttgtttgcaa Alignment from Exonerate_coding2genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTG-AGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtgggagaggatgaacagatagaagctttggtcgctctgttcacagCATCCCTTCCTGGGCCAGCACCTTCATTGCAAGATGAGGTGCAGGAAAGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCAA---------CATATGGCACAGCTTGGCAGCCAGgtaagttcctctgctggtattcttattccctgtatgtcccttgtttgcaa Alignment from GeneWise CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAA-GCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtgggagaggatgaacagatagaagctttggtcgctctgttcacagCATCCCTTCCTGGGCCAGCACCTTCATTGCAAGATGAGGTGCAGGAAAGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAAAATCGGGAGCTTCGAGGTCAACATATG---------GCACAGCTTGGCAGCCAGgtaagttcctctgctggtattcttattccctgtatgtcccttgtttgcaa #### Ccdc88b_ID1837_12 --> 0 - 1 Original Alignment GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTG-GAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGg ggttaggccagtttaatgaacaggacacacaagagtgcctttccttctagGACCTGGACTCGCTGCGGCACCAGTTGGAGCAGCTAGTGGAAGAGAATGTGGAGTTGGAGCTGCGAACTGCAGAGAAGTCTGGAGCCACCTCCAGGTTCCCCTGGGGAGggtatagcaggtcttgtgtaagggaaaggatctggggaggaaggcaacctt Alignment from CESAR GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTG-GAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGg ggttaggccagtttaatgaacaggacacacaagagtgcctttccttctagGACCTGGACTCGCTGCGGCACCAGTTGGAGCAGCTAGTGGAAGAGAATGTGGAGTTGGAGCTGCGAACTGCAGAGAAGTCTGGAGCCACCTCCAGGTTCCCCTGGGGAGggtatagcaggtcttgtgtaagggaaaggatctggggaggaaggcaacctt Alignment from Spaln_aa2Genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTG-GAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaggccagtttaatgaacaggacacacaagagtgcctttccttctagGACCTGGACTCGCTGCGGCACCAGTTGGAGCAGCTAGTGGAAGAGAATGTGGAGTTGGAGCTGcGAACTGCAGAGAAGTCTGGAGCCACCTCCAGGTTCCCCTGGGGAGGgtatagcaggtcttgtgtaagggaaaggatctggggaggaaggcaacctt Alignment from Spaln_nt2Genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTG-GAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaggccagtttaatgaacaggacacacaagagtgcctttccttctagGACCTGGACTCGCTGCGGCACCAGTTGGAGCAGCTAGTGGAAGAGAATGTGGAGTTGGAGCTGCGAACTGCAGAGAAGTCTGGAGCCACCTCCAGGTTCCCCTGGGGAGGgtatagcaggtcttgtgtaagggaaaggatctggggaggaaggcaacctt Alignment from Pairagon GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTG-GAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaggccagtttaatgaacaggacacacaagagtgcctttccttctagGACCTGGACTCGCTGCGGCACCAGTTGGAGCAGCTAGTGGAAGAGAATGTGGAGTTGGAGCTGCGAACTGCAGAGAAGTCTGGAGCCACCTCCAGGTTCCCCTGGGGAGGgtatagcaggtcttgtgtaagggaaaggatctggggaggaaggcaacctt Alignment from Exonerate_protein2genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTG-GAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaggccagtttaatgaacaggacacacaagagtgcctttccttctagGACCTGGACTCGCTGCGGCACCAGTTGGAGCAGCTAGTGGAAGAGAATGTGGAGTTGGAGCTGCGAACTGCAGAGAAGTCTGGAGCCACCTCCAGGTTCCCCTGGGGAGGgtatagcaggtcttgtgtaagggaaaggatctggggaggaaggcaacctt Alignment from Exonerate_coding2genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTG-GAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaggccagtttaatgaacaggacacacaagagtgcctttccttctagGACCTGGACTCGCTGCGGCACCAGTTGGAGCAGCTAGTGGAAGAGAATGTGGAGTTGGAGCTGCGAACTGCAGAGAAGTCTGGAGCCACCTCCAGGTTCCCCTGGGGAGGgtatagcaggtcttgtgtaagggaaaggatctggggaggaaggcaacctt Alignment from GeneWise GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAG-CTGGAACTTCAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttaggccagtttaatgaacaggacacacaagagtgcctttccttctagGACCTGGACTCGCTGCGGCACCAGTTGGAGCAGCTAGTGGAAGAGAATGTGGAGTTGGAGCTGCGAACTGCAGAGAAGTCTGGAGCCACCTCCAGGTTCCCCTGGGGAGGgtatagcaggtcttgtgtaagggaaaggatctggggaggaaggcaacctt #### Ccdc88b_ID1838_11 --> 0 - 0 Original Alignment GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAAC-CTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG taagcactgaagagactcaaccccttcgacttgttgcctctctccttcagGAGGAGCAGGTCCTCTCTGAAGCTGTAGAGGCCTCAACTGTCCTTCTTGAAGAGCAGTTGGAGGTTGCCCAAAAGCGCTCAGCAAGACTGCATGAAACCCAGAGGGAAAATCCTTCTGCTGCGCACACGATTGGGTGAGGCCCATGTAgtgaggtgtattgcatgttgcaagttgggaccatgatttgactttacttt Alignment from CESAR GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAAC-CTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG taagcactgaagagactcaaccccttcgacttgttgcctctctccttcagGAGGAGCAGGTCCTCTCTGAAGCTGTAGAGGCCTCAACTGTCCTTCTTGAAGAGCAGTTGGAGGTTGCCCAAAAGCGCTCAGCAAGACTGCATGAAACCCAGAGGGAAAATCCTTCTGCTGCGCACACGATTGGGTGAGGCCCATGTAgtgaggtgtattgcatgttgcaagttgggaccatgatttgactttacttt Alignment from Spaln_aa2Genome GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAAC-CTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG taagcactgaagagactcaaccccttcgacttgttgcctctctccttcagGAGGAGCAGGTCCTCTCTGAAGCTGTAGAGGCCTCAACTGTCCTTCTTGAAGAGCAGTTGGAGGTTGCCCAAAAGCGCTCAGCAAGACTGCATGAAACCCAGAGGGAAAATcCTTCTGCTGCGCACACGATTGGGTGAGGCCCATGTAgtgaggtgtattgcatgttgcaagttgggaccatgatttgactttacttt Alignment from Spaln_nt2Genome GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAA-CCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG taagcactgaagagactcaaccccttcgacttgttgcctctctccttcagGAGGAGCAGGTCCTCTCTGAAGCTGTAGAGGCCTCAACTGTCCTTCTTGAAGAGCAGTTGGAGGTTGCCCAAAAGCGCTCAGCAAGACTGCATGAAACCCAGAGGGAAAATCCTTCTGCTGCGCACACGATTGGGTGAGGCCCATGTAgtgaggtgtattgcatgttgcaagttgggaccatgatttgactttacttt Alignment from Pairagon GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAA-CCTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG taagcactgaagagactcaaccccttcgacttgttgcctctctccttcagGAGGAGCAGGTCCTCTCTGAAGCTGTAGAGGCCTCAACTGTCCTTCTTGAAGAGCAGTTGGAGGTTGCCCAAAAGCGCTCAGCAAGACTGCATGAAACCCAGAGGGAAAATCCTTCTGCTGCGCACACGATTGGGTGAGGCCCATGTAgtgaggtgtattgcatgttgcaagttgggaccatgatttgactttacttt Alignment from Exonerate_protein2genome GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAAC-CTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG taagcactgaagagactcaaccccttcgacttgttgcctctctccttcagGAGGAGCAGGTCCTCTCTGAAGCTGTAGAGGCCTCAACTGTCCTTCTTGAAGAGCAGTTGGAGGTTGCCCAAAAGCGCTCAGCAAGACTGCATGAAACCCAGAGGGAAAATCCTTCTGCTGCGCACACGATTGGGTGAGGCCCATGTAgtgaggtgtattgcatgttgcaagttgggaccatgatttgactttacttt Alignment from Exonerate_coding2genome GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAAC-CTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG taagcactgaagagactcaaccccttcgacttgttgcctctctccttcagGAGGAGCAGGTCCTCTCTGAAGCTGTAGAGGCCTCAACTGTCCTTCTTGAAGAGCAGTTGGAGGTTGCCCAAAAGCGCTCAGCAAGACTGCATGAAACCCAGAGGGAAAATCCTTCTGCTGCGCACACGATTGGGTGAGGCCCATGTAgtgaggtgtattgcatgttgcaagttgggaccatgatttgactttacttt Alignment from GeneWise GAGGAGCGGGTCCTTTCCGAGGCCCTGGAGGCCTCGAAGGTCCTGCTAGAGGAACAGCTGGAGGTTGCCCGAGAGCGCTCAGCCAGGCTGCATGAGACCCAGAGGGAGAAC-CTCCTGCTGCGCACGCGGTTGGGCGAGGCCCATGCG taagcactgaagagactcaaccccttcgacttgttgcctctctccttcagGAGGAGCAGGTCCTCTCTGAAGCTGTAGAGGCCTCAACTGTCCTTCTTGAAGAGCAGTTGGAGGTTGCCCAAAAGCGCTCAGCAAGACTGCATGAAACCCAGAGGGAAAATCCTTCTGCTGCGCACACGATTGGGTGAGGCCCATGTAgtgaggtgtattgcatgttgcaagttgggaccatgatttgactttacttt #### Ccdc88b_ID1841_8 --> 0 - 2 Original Alignment CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCT-AATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGgt tagtgtgggggtttgcaacatgcgtcttttctctgctgctctctccacagCGGTTGGCCGAACTGCTGCTGGAGAGGGAGCCAGACCACTTGCTGCTTCCTGAGGCTCCTGCCCAATGCG------GAGGGTGTCTCCCACCATTTAGCTCTGCAACTGACCAATGCTAAGGCCCAACTGAGACGCCTCGGGAGGGAGgtgtgagtggccaaaggcacataaaggggtaaatgaaatcctggcaggttct Alignment from CESAR CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCT-AATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGgt tagtgtgggggtttgcaacatgcgtcttttctctgctgctctctccacagCGGTTGGCCGAACTGCTGCTGGAGAGGGAGCCAGACCACTTGCTGCTTCCTGAGGCTCCTGCCCAAT------GCGGAGGGTGTCTCCCACCATTTAGCTCTGCAACTGACCAATGCTAAGGCCCAACTGAGACGCCTCGGGAGGGAGgtgtgagtggccaaaggcacataaaggggtaaatgaaatcctggcaggttct Alignment from Spaln_aa2Genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tagtgtgggggtttgcaacatgcgtcttttctctgctgctctctccacagCGGTTGGCCGAACTGCTGCTGGAGAGGGAGCCAGACCACTTGCTGCTTCCTGAGGCTCCTGCCC-----AATGCGGAGGGTGTCTCCCACCATTTAGCTCTGCAACTGACCAATGCTAAGGCCCAACTGAGACGCCTCGGGAGGGAGGTgtgagtggccaaaggcacataaaggggtaaatgaaatcctggcaggttct Alignment from Spaln_nt2Genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tagtgtgggggtttgcaacatgcgtcttttctctgctgctctctccacagCGGTTGGCCGAACTGCTGCTGGAGAGGGAGCCAGACCACTTGCTGCTTCCTGAGGCTCCTGC-----CCAATGCGGAGGGTGTCTCCCACCATTTAGCTCTGCAACTGACCAATGCTAAGGCCCAACTGAGACGCCTCGGGAGGGAGGTgtgagtggccaaaggcacataaaggggtaaatgaaatcctggcaggttct Alignment from Pairagon CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tagtgtgggggtttgcaacatgcgtcttttctctgctgctctctccacagCGGTTGGCCGAACTGCTGCTGGAGAGGGAGCCAGACCACTTGCTGCTTCCTGAGGCTCCTGCCCA-----ATGCGGAGGGTGTCTCCCACCATTTAGCTCTGCAACTGACCAATGCTAAGGCCCAACTGAGACGCCTCGGGAGGGAGGTgtgagtggccaaaggcacataaaggggtaaatgaaatcctggcaggttct Alignment from Exonerate_protein2genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCT-AATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tagtgtgggggtttgcaacatgcgtcttttctctgctgctctctccacagCGGTTGGCCGAACTGCTGCTGGAGAGGGAGCCAGACCACTTGCTGCTTCCTGAGGCTCCTGCCCAAT------GCGGAGGGTGTCTCCCACCATTTAGCTCTGCAACTGACCAATGCTAAGGCCCAACTGAGACGCCTCGGGAGGGAGGTgtgagtggccaaaggcacataaaggggtaaatgaaatcctggcaggttct Alignment from Exonerate_coding2genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCT-AATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tagtgtgggggtttgcaacatgcgtcttttctctgctgctctctccacagCGGTTGGCCGAACTGCTGCTGGAGAGGGAGCCAGACCACTTGCTGCTTCCTGAGGCTCCTGCCCAAT------GCGGAGGGTGTCTCCCACCATTTAGCTCTGCAACTGACCAATGCTAAGGCCCAACTGAGACGCCTCGGGAGGGAGGTgtgagtggccaaaggcacataaaggggtaaatgaaatcctggcaggttct Alignment from GeneWise CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT tagtgtgggggtttgcaacatgcgtcttttctctgctgctctctccacagCGGTTGGCCGAACTGCTGCTGGAGAGGGAGCCAGACCACTTGCTGCTTCCTGAGGCTCCTGCCC-----AATGCGGAGGGTGTCTCCCACCATTTAGCTCTGCAACTGACCAATGCTAAGGCCCAACTGAGACGCCTCGGGAGGGAGGTgtgagtggccaaaggcacataaaggggtaaatgaaatcctggcaggttct #### Ccdc88b_ID1845_4 --> 0 - 1 Original Alignment GAGGAGCTACAG-CTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAg acccagtagcacctattatggatatattattcttgaaaccgtatttgcagGAGGAGCTACAGCCTTTTAATCCTGTCAGCACCTCCAGACCTCCAGCCTACAGGGTGTGAACCCTTCTCAggtaggagttcttgctcttttctaccatttgactctgttatatatcctcat Alignment from CESAR GAGGAGCTACAG-CTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAg acccagtagcacctattatggatatattattcttgaaaccgtatttgcagGAGGAGCTACAGCCTTTTAATCCTGTCAGCACCTCCAGACCTCCAGCCTACAGGGTGTGAACCCTTCTCAggtaggagttcttgctcttttctaccatttgactctgttatatatcctcat Alignment from Spaln_aa2Genome GAGGAGCTACAG-CTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG acccagtagcacctattatggatatattattcttgaaaccgtatttgcagGAGGAGCTACAGcCTTTTAATCCTGTCAGCACCTCCAGACCTCCAGCCTACAGGGTGTGAACCCTTCTCAGgtaggagttcttgctcttttctaccatttgactctgttatatatcctcat Alignment from Spaln_nt2Genome GAGGAGCTACAGC-TGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG acccagtagcacctattatggatatattattcttgaaaccgtatttgcagGAGGAGCTACAGCCTTTTAATCCTGTCAGCACCTCCAGACCTCCAGCCTACAGGGTGTGAACCCTTCTCAGgtaggagttcttgctcttttctaccatttgactctgttatatatcctcat Alignment from Pairagon GAGGAGCTACAG-CTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG acccagtagcacctattatggatatattattcttgaaaccgtatttgcagGAGGAGCTACAGCCTTTTAATCCTGTCAGCACCTCCAGACCTCCAGCCTACAGGGTGTGAACCCTTCTCAGgtaggagttcttgctcttttctaccatttgactctgttatatatcctcat Alignment from Exonerate_protein2genome GAGGAGCTACAG-CTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG acccagtagcacctattatggatatattattcttgaaaccgtatttgcagGAGGAGCTACAGCCTTTTAATCCTGTCAGCACCTCCAGACCTCCAGCCTACAGGGTGTGAACCCTTCTCAGgtaggagttcttgctcttttctaccatttgactctgttatatatcctcat Alignment from Exonerate_coding2genome GAGGAGCTACAG-CTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG acccagtagcacctattatggatatattattcttgaaaccgtatttgcagGAGGAGCTACAGCCTTTTAATCCTGTCAGCACCTCCAGACCTCCAGCCTACAGGGTGTGAACCCTTCTCAGgtaggagttcttgctcttttctaccatttgactctgttatatatcctcat Alignment from GeneWise -CTGCTGATCCTATCACCACCTCCAGACCTCCAGACAATGGGGTGTGACCCCTTCTCAG acccagtagcacctattatggatatattattcttgaaaccgtatttgcaggaggagctacagCCTTTTAATCCTGTCAGCACCTCCAGACCTCCAGCCTACAGGGTGTGAACCCTTCTCAGgtaggagttcttgctcttttctaccatttgactctgttatatatcctcat #### Ccdc88b_ID1846_3 --> 1 - 0 Original Alignment tGCTCCCAGTTCCCGAGGAGGA-CTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggaaaatggaactatgcttactcccattgaatttttttttcctcccaagcGCTCCAAGTTCCCAAGGGGGACGTTCGTATGGTCAGGGGGCGGGATGGTACTGCTGCTTGTCAAATGTGGACCCTCTGTCATCTATGGGGGCAATTGAGAGATTTTTATCAGgtaaccttccaggatggtgaaatgtgagacccagtagcacctattatgga Alignment from CESAR tGCTCCCAGTTCCCGAGGAGGA-CTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggaaaatggaactatgcttactcccattgaatttttttttcctcccaagcGCTCCAAGTTCCCAAGGGGGACGTTCGTATGGTCAGGGGGCGGGATGGTACTGCTGCTTGTCAAATGTGGACCCTCTGTCATCTATGGGGGCAATTGAGAGATTTTTATCAGgtaaccttccaggatggtgaaatgtgagacccagtagcacctattatgga Alignment from Spaln_aa2Genome TGCTCCCAGTTCCCGAGGAGGA-CTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggaaaatggaactatgcttactcccattgaatttttttttcctcccaagCGCTCCAAGTTCCCAAGGGGGAcGTTCGTATGGTCAGGGGGCGGGATGGTACTGCTGCTTGTCAAATGTGGACCCTCTGTCATCTATGGGGGCAATTGAGAGATTTTTATCAGgtaaccttccaggatggtgaaatgtgagacccagtagcacctattatgga Alignment from Spaln_nt2Genome TGCTCCCAGTTCCCGAGGAGGAC-TTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggaaaatggaactatgcttactcccattgaatttttttttcctcccaagCGCTCCAAGTTCCCAAGGGGGACGTTCGTATGGTCAGGGGGCGGGATGGTACTGCTGCTTGTCAAATGTGGACCCTCTGTCATCTATGGGGGCAATTGAGAGATTTTTATCAGgtaaccttccaggatggtgaaatgtgagacccagtagcacctattatgga Alignment from Pairagon TGCTCCCAGTTCCCGAGGAGGAC-TTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggaaaatggaactatgcttactcccattgaatttttttttcctcccaagCGCTCCAAGTTCCCAAGGGGGACGTTCGTATGGTCAGGGGGCGGGATGGTACTGCTGCTTGTCAAATGTGGACCCTCTGTCATCTATGGGGGCAATTGAGAGATTTTTATCAGgtaaccttccaggatggtgaaatgtgagacccagtagcacctattatgga Alignment from Exonerate_protein2genome TGCTCCCAGTTCCCGAGGAGGA-CTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggaaaatggaactatgcttactcccattgaatttttttttcctcccaagCGCTCCAAGTTCCCAAGGGGGACGTTCGTATGGTCAGGGGGCGGGATGGTACTGCTGCTTGTCAAATGTGGACCCTCTGTCATCTATGGGGGCAATTGAGAGATTTTTATCAGgtaaccttccaggatggtgaaatgtgagacccagtagcacctattatgga Alignment from Exonerate_coding2genome TGCTCCCAGTTCCCGAGGAGGA-CTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggaaaatggaactatgcttactcccattgaatttttttttcctcccaagCGCTCCAAGTTCCCAAGGGGGACGTTCGTATGGTCAGGGGGCGGGATGGTACTGCTGCTTGTCAAATGTGGACCCTCTGTCATCTATGGGGGCAATTGAGAGATTTTTATCAGgtaaccttccaggatggtgaaatgtgagacccagtagcacctattatgga Alignment from GeneWise TGCTCCCAGTTCCCGAGGAGGA-CTTCGAATGGTCAGGGGCCGTGATGGTCCTGCAGCCTGTCGGATGTGGAACCTCTGTCATCTATGGGGGCGACTGAGGGATTTTTACCAG gggaaaatggaactatgcttactcccattgaatttttttttcctcccaagCGCTCCAAGTTCCCAAGGGGGACGTTCGTATGGTCAGGGGGCGGGATGGTACTGCTGCTTGTCAAATGTGGACCCTCTGTCATCTATGGGGGCAATTGAGAGATTTTTATCAGgtaaccttccaggatggtgaaatgtgagacccagtagcacctattatgga #### Ccdc88b_ID1847_2 --> 0 - 2 Original Alignment GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGG-GGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCat gcctggtattgtgcacctgcctcccttcaatggtttctctttttctttagGCTTTGGGTTTGGCTGGCCTCGTGGGCGAGGCAGAGAAGTCAGCAGGGCGGAACTGAAGAGGAGGAGGAGGAGGAGGAGGAAGAAGGGGCTCTTTGTACGGAAAAAAGATCCCTACGGTTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGACATTatgtaatggacacagggaagtttagttgcggatgttggccatgaatggtagg Alignment from CESAR GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGG-GGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCat gcctggtattgtgcacctgcctcccttcaatggtttctctttttctttagGCTTTGGGTTTGGCTGGCCTCGTGGGCGAGGCAGAGAAGTCAGCAGGGCGGAACTGAAGAGGAGGAGGAGGAGGAGGAGGAAGAAGGGGCTCTTTGTACGGAAAAAAGATCCCTACGGTTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGACATTatgtaatggacacagggaagtttagttgcggatgttggccatgaatggtagg Alignment from Spaln_aa2Genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCG-GGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT gcctggtattgtgcacctgcctcccttcaatggtttctctttttctttagGCTTTGGGTTTGGCTGGCCTCGTGGGCGAGGCAGAGAAGTCAGCAgGGCGGAACTGAAGAGGAGGAGGAGGAGGAGGAGGAAGAAGGGGCTCTTTGTACGGAAAAAAGATCCCTACGGTTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGACATTATgtaatggacacagggaagtttagttgcggatgttggccatgaatggtagg Alignment from Spaln_nt2Genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGG-GGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT gcctggtattgtgcacctgcctcccttcaatggtttctctttttctttagGCTTTGGGTTTGGCTGGCCTCGTGGGCGAGGCAGAGAAGTCAGCAGGGCGGAACTGAAGAGGAGGAGGAGGAGGAGGAGGAAGAAGGGGCTCTTTGTACGGAAAAAAGATCCCTACGGTTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGACATTATgtaatggacacagggaagtttagttgcggatgttggccatgaatggtagg Alignment from Pairagon GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGG-GGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT gcctggtattgtgcacctgcctcccttcaatggtttctctttttctttagGCTTTGGGTTTGGCTGGCCTCGTGGGCGAGGCAGAGAAGTCAGCAGGGCGGAACTGAAGAGGAGGAGGAGGAGGAGGAGGAAGAAGGGGCTCTTTGTACGGAAAAAAGATCCCTACGGTTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGACATTATgtaatggacacagggaagtttagttgcggatgttggccatgaatggtagg Alignment from Exonerate_protein2genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCG-GGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT gcctggtattgtgcacctgcctcccttcaatggtttctctttttctttagGCTTTGGGTTTGGCTGGCCTCGTGGGCGAGGCAGAGAAGTCAGCAGGGCGGAACTGAAGAGGAGGAGGAGGAGGAGGAGGAAGAAGGGGCTCTTTGTACGGAAAAAAGATCCCTACGGTTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGACATTATgtaatggacacagggaagtttagttgcggatgttggccatgaatggtagg Alignment from Exonerate_coding2genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCG-GGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT gcctggtattgtgcacctgcctcccttcaatggtttctctttttctttagGCTTTGGGTTTGGCTGGCCTCGTGGGCGAGGCAGAGAAGTCAGCAGGGCGGAACTGAAGAGGAGGAGGAGGAGGAGGAGGAAGAAGGGGCTCTTTGTACGGAAAAAAGATCCCTACGGTTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGACATTATgtaatggacacagggaagtttagttgcggatgttggccatgaatggtagg Alignment from GeneWise GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCA-GCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGAGCCTTACTCCTTCGGGTGCTGGGCATCAT gcctggtattgtgcacctgcctcccttcaatggtttctctttttctttagGCTTTGGGTTTGGCTGGCCTCGTGGGCGAGGCAGAGAAGTCAGCAGGGCGGAACTGAAGAGGAGGAGGAGGAGGAGGAGGAAGAAGGGGCTCTTTGTACGGAAAAAAGATCCCTACGGTTGATTGATGGAGCCTTACTCCTTCGGGTTTTAGACATTATgtaatggacacagggaagtttagttgcggatgttggccatgaatggtagg #### Cd5_ID2994_4 --> 2 - 1 Original Alignment GAGCCTGATCTGCCTAg agCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTG-CCGGAGCCCACAg GAGCCTGAGCTGCCTAggtaagtgacagattttcttacttttgccccaagaaCCCCAGAGAACAGCTCCTCCACCCACAACCACCCCACCCACCACTGTACCCTGAGCCCACAggtgagccggagtactgtccaagaagacaaagtagaggatgaacttgtgtt Alignment from CESAR GAGCCTGATCTGCCTAg agCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTG-CCGGAGCCCACAg GAGCCTGAGCTGCCTAggtgagggacagattttcttacttttgccccaagaaCCCCAGAGAACAGCTCCTCCACCCACAACCACCCCACCCACCACTGTACCCTGAGCCCACAggtgagccggagtactgtccaagaagacaaagtagaggatgaacttgtgtt Alignment from Spaln_aa2Genome GAGCCTGATCTGCCTAG AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTG-CCGGAGCCCACAG GAGCCTGAGCTGCCTAGgtaagtgacagattttcttacttttgccccaagAACCCCAGAGAACAGCTCCTCCACCCACAACCACCCCACCCACCACTGTAcCCTGAGCCCACAGgtgagccggagtactgtccaagaagacaaagtagaggatgaacttgtgtt Alignment from Spaln_nt2Genome GAGCCTGATCTGCCTAG AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCG-GAGCCCACAG GAGCCTGAGCTGCCTAGgtaagtgacagattttcttacttttgccccaagAACCCCAGAGAACAGCTCCTCCACCCACAACCACCCCACCCACCACTGTACCCTGAGCCCACAGgtgagccggagtactgtccaagaagacaaagtagaggatgaacttgtgtt Alignment from Pairagon GAGCCTGATCTGCCTAG AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTGCCG-GAGCCCACAG GAGCCTGAGCTGCCTAGgtaagtgacagattttcttacttttgccccaagAACCCCAGAGAACAGCTCCTCCACCCACAACCACCCCACCCACCACTGTACCCTGAGCCCACAGgtgagccggagtactgtccaagaagacaaagtagaggatgaacttgtgtt Alignment from Exonerate_protein2genome GAGCCTGATCTGCCTAG AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTG-CCGGAGCCCACAG GAGCCTGAGCTGCCTAGgtaagtgacagattttcttacttttgccccaagAACCCCAGAGAACAGCTCCTCCACCCACAACCACCCCACCCACCACTGTACCCTGAGCCCACAGgtgagccggagtactgtccaagaagacaaagtagaggatgaacttgtgtt Alignment from Exonerate_coding2genome GAGCCTGATCTGCCTAG AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACCGTG-CCGGAGCCCACAG GAGCCTGAGCTGCCTAGgtaagtgacagattttcttacttttgccccaagAACCCCAGAGAACAGCTCCTCCACCCACAACCACCCCACCCACCACTGTACCCTGAGCCCACAGgtgagccggagtactgtccaagaagacaaagtagaggatgaacttgtgtt Alignment from GeneWise GAGCCTGATCTGCCTAG AGCCCCAGAGAACGACACCTCCACCCACAACCACCCCACCCACCACC-GTGCCGGAGCCCACAG GAGCCTGAGCTGCCTAGgtaagtgacagattttcttacttttgccccaagAACCCCAGAGAACAGCTCCTCCACCCACAACCACCCCACCCACCACTGTACCCTGAGCCCACAGgtgagccggagtactgtccaagaagacaaagtagaggatgaacttgtgtt #### Cdc42bpg_ID1573_3 --> 0 - 0 Original Alignment GTTGCCGTGGTGAGGCAGAGG-GGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG tgggttttcctgtgggtccagtcttattctgtttgtcttctttgtttcagGTTATTGTGGTGAGGCAGAGGCGGAAGTGGCCAGATCTTTGCAATGAACATGTTTCATAAGTGGGAAATGCTGAAGAGGGCTGAGgtaagttggcacaaaaacgcaaaatgtagctaagattgcatgttttctca Alignment from CESAR GTTGCCGTGGTGAGGCAGAGG-GGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG tgggttttcctgtgggtccagtcttattctgtttgtcttctttgtttcagGTTATTGTGGTGAGGCAGAGGCGGAAGTGGCCAGATCTTTGCAATGAACATGTTTCATAAGTGGGAAATGCTGAAGAGGGCTGAGgtaagttggcacaaaaacgcaaaatgtagctcttataattccatcttttt Alignment from Spaln_aa2Genome GGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG tgggttttcctgtgggtccagtcttattctgtttgtcttctttgtttcaggttattgtggtgagGCAGAGGCGGAAGTGGCCAGATCTTTGCAATGAACATGTTTCATAAGTGGGAAATGCTGAAGAGGGCTGAGgtaagttggcacaaaaacgcaaaatgtagctaagattgcatgttttctca Alignment from Spaln_nt2Genome GTTGCCGTGGTGAGGCAGAGG-GGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG tgggttttcctgtgggtccagtcttattctgtttgtcttctttgtttcagGTTATTGTGGTGAGGCAGAGGCGGAAGTGGCCAGATCTTTGCAATGAACATGTTTCATAAGTGGGAAATGCTGAAGAGGGCTGAGgtaagttggcacaaaaacgcaaaatgtagctaagattgcatgttttctca Alignment from Pairagon GTTGCCGTGGTGAGGCAGAGG-GGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG tgggttttcctgtgggtccagtcttattctgtttgtcttctttgtttcagGTTATTGTGGTGAGGCAGAGGCGGAAGTGGCCAGATCTTTGCAATGAACATGTTTCATAAGTGGGAAATGCTGAAGAGGGCTGAGgtaagttggcacaaaaacgcaaaatgtagctaagattgcatgttttctca Alignment from Exonerate_protein2genome GTTGCCGTGGTGAGGCAGAGG-GGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG tgggttttcctgtgggtccagtcttattctgtttgtcttctttgtttcagGTTATTGTGGTGAGGCAGAGGCGGAAGTGGCCAGATCTTTGCAATGAACATGTTTCATAAGTGGGAAATGCTGAAGAGGGCTGAGgtaagttggcacaaaaacgcaaaatgtagctaagattgcatgttttctca Alignment from Exonerate_coding2genome GTTGCCGTGGTGAGGCAGAGG-GGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG tgggttttcctgtgggtccagtcttattctgtttgtcttctttgtttcagGTTATTGTGGTGAGGCAGAGGCGGAAGTGGCCAGATCTTTGCAATGAACATGTTTCATAAGTGGGAAATGCTGAAGAGGGCTGAGgtaagttggcacaaaaacgcaaaatgtagctaagattgcatgttttctca Alignment from GeneWise GGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTGAAGAGGGCTGAG tgggttttcctgtgggtccagtcttattctgtttgtcttctttgtttcaggttattgtggtgagGCAGAGGCGGAAGTGGCCAGATCTTTGCAATGAACATGTTTCATAAGTGGGAAATGCTGAAGAGGGCTGAGgtaagttggcacaaaaacgcaaaatgtagctaagattgcatgttttctca #### Cdc42bpg_ID1581_11 --> 2 - 1 Original Alignment agCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAG-GAAGTACAGGTTCTTCAGGAGAAACTGGCAg gtgttaaagtcctgggagagctgtcagactccctgtttgctttctttaagagCACCTGCATGGTCCACTACAACCACAGGAGCTTGTGCATCTTCAGAAACGAAGTTCAGGTTCTTCAGGAGAAACTGGCGggtagggctggtaagttattagagtaggccaagttccttgccatgtcctag Alignment from CESAR agCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAG-GAAGTACAGGTTCTTCAGGAGAAACTGGCAg gtgttaaagtcctgggagagctgtcagactccctgtttgctttctttaagagCACCTGCATGGTCCACTACAACCACAGGAGCTTGTGCATCTTCAGAAACGAAGTTCAGGTTCTTCAGGAGAAACTGGCGggtagggctggtaagttattagagtaggccaagttccttgccatgtcctag Alignment from Spaln_aa2Genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAG-GAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtgttaaagtcctgggagagctgtcagactccctgtttgctttctttaagAGCACCTGCATGGTCCACTACAACCACAGGAGCTTGTGCATCTTCAGAAAcGAAGTTCAGGTTCTTCAGGAGAAACTGGCGGgtagggctggtaagttattagagtaggccaagttccttgccatgtcctag Alignment from Spaln_nt2Genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAG-GAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtgttaaagtcctgggagagctgtcagactccctgtttgctttctttaagAGCACCTGCATGGTCCACTACAACCACAGGAGCTTGTGCATCTTCAGAAACGAAGTTCAGGTTCTTCAGGAGAAACTGGCGGgtagggctggtaagttattagagtaggccaagttccttgccatgtcctag Alignment from Pairagon AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAG-GAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtgttaaagtcctgggagagctgtcagactccctgtttgctttctttaagAGCACCTGCATGGTCCACTACAACCACAGGAGCTTGTGCATCTTCAGAAACGAAGTTCAGGTTCTTCAGGAGAAACTGGCGGgtagggctggtaagttattagagtaggccaagttccttgccatgtcctag Alignment from Exonerate_protein2genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAG-GAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtgttaaagtcctgggagagctgtcagactccctgtttgctttctttaagAGCACCTGCATGGTCCACTACAACCACAGGAGCTTGTGCATCTTCAGAAACGAAGTTCAGGTTCTTCAGGAGAAACTGGCGGgtagggctggtaagttattagagtaggccaagttccttgccatgtcctag Alignment from Exonerate_coding2genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAGAAG-GAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtgttaaagtcctgggagagctgtcagactccctgtttgctttctttaagAGCACCTGCATGGTCCACTACAACCACAGGAGCTTGTGCATCTTCAGAAACGAAGTTCAGGTTCTTCAGGAGAAACTGGCGGgtagggctggtaagttattagagtaggccaagttccttgccatgtcctag Alignment from GeneWise AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGCTTCAG-AAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG gtgttaaagtcctgggagagctgtcagactccctgtttgctttctttaagAGCACCTGCATGGTCCACTACAACCACAGGAGCTTGTGCATCTTCAGAAACGAAGTTCAGGTTCTTCAGGAGAAACTGGCGGgtagggctggtaagttattagagtaggccaagttccttgccatgtcctag #### Cdc42bpg_ID1582_12 --> 2 - 0 Original Alignment agACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGA-AGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG caggggggggaattatcctaagcgcagcgccacattgttttgaatttcagagACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGATGCTAGACAGCCCTGCCCCAAACATCCAGTTACAGCAGGAGAAGGACCGCCTTCAGCAGgtaagaatcatgatgggaattatactgtgcgttttttggcaatataaacc Alignment from CESAR agACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGA-AGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG caggggggggaattatcctaagcgcagcgccacattgttttgaatttcagagACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGATGCTAGACAGCCCTGCCCCAAACATCCAGTTACAGCAGGAGAAGGACCGCCTTCAGCAGgtaagaatcatgatgggaattatactgtgcgttttttggcaatataaacc Alignment from Spaln_aa2Genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGA-AGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG caggggggggaattatcctaagcgcagcgccacattgttttgaatttcagAGACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGATGCTAGAcAGCCCTGCCCCAAACATCCAGTTACAGCAGGAGAAGGACCGCCTTCAGCAGgtaagaatcatgatgggaattatactgtgcgttttttggcaatataaacc Alignment from Spaln_nt2Genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGA-AGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG caggggggggaattatcctaagcgcagcgccacattgttttgaatttcagAGACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGATGCTAGACAGCCCTGCCCCAAACATCCAGTTACAGCAGGAGAAGGACCGCCTTCAGCAGgtaagaatcatgatgggaattatactgtgcgttttttggcaatataaacc Alignment from Pairagon AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGA-AGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG caggggggggaattatcctaagcgcagcgccacattgttttgaatttcagAGACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGATGCTAGACAGCCCTGCCCCAAACATCCAGTTACAGCAGGAGAAGGACCGCCTTCAGCAGgtaagaatcatgatgggaattatactgtgcgttttttggcaatataaacc Alignment from Exonerate_protein2genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGA-AGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG caggggggggaattatcctaagcgcagcgccacattgttttgaatttcagAGACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGATGCTAGACAGCCCTGCCCCAAACATCCAGTTACAGCAGGAGAAGGACCGCCTTCAGCAGgtaagaatcatgatgggaattatactgtgcgttttttggcaatataaacc Alignment from Exonerate_coding2genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGA-AGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG caggggggggaattatcctaagcgcagcgccacattgttttgaatttcagAGACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGATGCTAGACAGCCCTGCCCCAAACATCCAGTTACAGCAGGAGAAGGACCGCCTTCAGCAGgtaagaatcatgatgggaattatactgtgcgttttttggcaatataaacc Alignment from GeneWise AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCCATGCTAGA-AGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG caggggggggaattatcctaagcgcagcgccacattgttttgaatttcagAGACATTGAAGGACAGCAAGGCTTCCCTCTCACAAGCTGATGGCCCTGATGCTAGACAGCCCTGCCCCAAACATCCAGTTACAGCAGGAGAAGGACCGCCTTCAGCAGgtaagaatcatgatgggaattatactgtgcgttttttggcaatataaacc #### Cdc42bpg_ID1583_13 --> 0 - 0 Original Alignment GAGCTGACTGAAGCTCAGGCAGCA-TTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG cagagctgaccattctgactttgctctgatgcttctccttttgttttcagGAGCTGCCTGAGGCTCAGGTAGCACCTGCAAGTGCAGGATGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCAGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCATGGGTTGTCCGCAGGGAGgtgagtcgtgagacattcaaaggctgcagacattcaaaggctgcagggca Alignment from CESAR GAGCTGACTGAAGCTCAGGCAGCA-TTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG cagagctgaccattctgactttgctctgatgcttctccttttgttttcagGAGCTGCCTGAGGCTCAGGTAGCACCTGCAAGTGCAGGATGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCAGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCATGGGTTGTCCGCAGGGAGgtgagtcgtgagacattcaaaggctgcagacattcaaaggctgcagggca Alignment from Spaln_aa2Genome GAGCTGACTGAAGCTCAGGCAGCA-TTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG cagagctgaccattctgactttgctctgatgcttctccttttgttttcagGAGCTGCCTGAGGCTCAGGTAGCAcCTGCAAGTGCAGGATGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCAGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCATGGGTTGTCCGCAGGGAGgtgagtcgtgagacattcaaaggctgcagacattcaaaggctgcagggca Alignment from Spaln_nt2Genome GAGCTGACTGAAGCTCAGGCAGCAT-TGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG cagagctgaccattctgactttgctctgatgcttctccttttgttttcagGAGCTGCCTGAGGCTCAGGTAGCACCTGCAAGTGCAGGATGCTGAGTTGTGCCAAGC---AAACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCAGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCATGGGTTGTCCGCAGGGAGgtgagtcgtgagacattcaaaggctgcagacattcaaaggctgcagggca Alignment from Pairagon GAGCTGACTGAAGCTCAGGCAGCA-TTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG cagagctgaccattctgactttgctctgatgcttctccttttgttttcagGAGCTGCCTGAGGCTCAGGTAGCACCTGCAAGTGCAGGATGCTGAGTTGTGCCAAGC---AAACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCAGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCATGGGTTGTCCGCAGGGAGgtgagtcgtgagacattcaaaggctgcagacattcaaaggctgcagggca Alignment from Exonerate_protein2genome GAGCTGACTGAAGCTCAGGCAGCA-TTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG cagagctgaccattctgactttgctctgatgcttctccttttgttttcagGAGCTGCCTGAGGCTCAGGTAGCACCTGCAAGTGCAGGATGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCAGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCATGGGTTGTCCGCAGGGAGgtgagtcgtgagacattcaaaggctgcagacattcaaaggctgcagggca Alignment from Exonerate_coding2genome GAGCTGACTGAAGCTCAGGCAGCA-TTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG cagagctgaccattctgactttgctctgatgcttctccttttgttttcagGAGCTGCCTGAGGCTCAGGTAGCACCTGCAAGTGCAGGATGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCAGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCATGGGTTGTCCGCAGGGAGgtgagtcgtgagacattcaaaggctgcagacattcaaaggctgcagggca Alignment from GeneWise GAGCTGACTGAAGCTCAGGCA-GCATTGCGAGTGCAGGATGCTGAGCTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG cagagctgaccattctgactttgctctgatgcttctccttttgttttcagGAGCTGCCTGAGGCTCAGGTAGCACCTGCAAGTGCAGGATGCTGAGTTGTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAATCTGCTGCAGCAGGACAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCATGGGTTGTCCGCAGGGAGgtgagtcgtgagacattcaaaggctgcagacattcaaaggctgcagggca #### Cdc42bpg_ID1587_17 --> 0 - 2 Original Alignment CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGT-TTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCtg tggggctattaggcatagaggattaatcgtaacagtttttttttttacagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGACCAAGCAACGTCCTGGAGGGCGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCtggtaagtatacacagctgggtggcacctctgatactgaggacccagctcac Alignment from CESAR CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGT-TTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCtg tggggctattaggcatagaggattaatcgtaacagtttttttttttacagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGACCAAGCAACGTCCTGGAGGGCGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCtggtaagtatacacagctgggtggcacctctgatactgaggacccagctcac Alignment from Spaln_aa2Genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGT-TTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tggggctattaggcatagaggattaatcgtaacagtttttttttttacagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGACCAAGCAACGTcCTGGAGGGCGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtaagtatacacagctgggtggcacctctgatactgaggacccagctcac Alignment from Spaln_nt2Genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTT-TGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tggggctattaggcatagaggattaatcgtaacagtttttttttttacagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGACCAAGCAACGTCCTGGAGGGCGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtaagtatacacagctgggtggcacctctgatactgaggacccagctcac Alignment from Pairagon CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGT-TTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tggggctattaggcatagaggattaatcgtaacagtttttttttttacagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGACCAAGCAACGTCCTGGAGGGCGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtaagtatacacagctgggtggcacctctgatactgaggacccagctcac Alignment from Exonerate_protein2genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGT-TTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tggggctattaggcatagaggattaatcgtaacagtttttttttttacagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGACCAAGCAACGTCCTGGAGGGCGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtaagtatacacagctgggtggcacctctgatactgaggacccagctcac Alignment from Exonerate_coding2genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGT-TTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tggggctattaggcatagaggattaatcgtaacagtttttttttttacagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGACCAAGCAACGTCCTGGAGGGCGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtaagtatacacagctgggtggcacctctgatactgaggacccagctcac Alignment from GeneWise CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGT-TTGGAGGGTGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tggggctattaggcatagaggattaatcgtaacagtttttttttttacagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGACCAAGCAACGTCCTGGAGGGCGAACGGCGGGAGACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtaagtatacacagctgggtggcacctctgatactgaggacccagctcac #### Cdc42bpg_ID1590_20 --> 1 - 1 Original Alignment cCGCCTGCAGGAGGCTGAG-AAGCAAAGTCAGGCCCTGCAG---CAGGAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGg ggagtgaaacacttttcaaggccctgcacctcttattttcttttttgcagcCGCCTGCAGGAAGCTGAGCACACAAAGTGAGGCACTCCAGCAGCAGGAGGTGGCTGAGCTAAGGGAAGAGCTGCAAGCTCGAGGACCAGGGggtaaggacctacttggatccaaccacgaggcctacactcatggggaccag Alignment from CESAR cCGCCTGCAGGAGGCTGAG-AAGCAAAGTCAGGCCCTGCAGCAG---GAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGg ggagtgaaacacttttcaaggccctgcacctcttattttcttttttgcagcCGCCTGCAGGAAGCTGAGCACACAAAGTGAGGCACTCCAGCAGCAGGAGGTGGCTGAGCTAAGGGAAGAGCTGCAAGCTCGAGGACCAGGGggtaaggacctacttggatccaaccacgaggcctacactcatggggaccag Alignment from Spaln_aa2Genome CCGCCTGCAGGAGGCTGAGAAG-CAAAGTCAGGCCCTG---CAGCAGGAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGG ggagtgaaacacttttcaaggccctgcacctcttattttcttttttgcagCCGCCTGCAGGAAGCTGAGCACaCAAAGTGAGGCACTCCAGCAGCAGGAGGTGGCTGAGCTAAGGGAAGAGCTGCAAGCTCGAGGACCAGGGGgtaaggacctacttggatccaaccacgaggcctacactcatggggaccag Alignment from Spaln_nt2Genome CCGCCTGCAGGAGGCTGAGAAG-CAAAGTCAGGCCCT---GCAGCAGGAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGG ggagtgaaacacttttcaaggccctgcacctcttattttcttttttgcagCCGCCTGCAGGAAGCTGAGCACACAAAGTGAGGCACTCCAGCAGCAGGAGGTGGCTGAGCTAAGGGAAGAGCTGCAAGCTCGAGGACCAGGGGgtaaggacctacttggatccaaccacgaggcctacactcatggggaccag Alignment from Pairagon CCGCCTGCAGGAGGCTGAG-AAGCAAAGTCAGGC---CCTGCAGCAGGAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGG ggagtgaaacacttttcaaggccctgcacctcttattttcttttttgcagCCGCCTGCAGGAAGCTGAGCACACAAAGTGAGGCACTCCAGCAGCAGGAGGTGGCTGAGCTAAGGGAAGAGCTGCAAGCTCGAGGACCAGGGGgtaaggacctacttggatccaaccacgaggcctacactcatggggaccag Alignment from Exonerate_protein2genome CCGCCTGCAGGAGGCTGAG-AAGCAAAGTCAGGCCCTG---CAGCAGGAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGG ggagtgaaacacttttcaaggccctgcacctcttattttcttttttgcagCCGCCTGCAGGAAGCTGAGCACACAAAGTGAGGCACTCCAGCAGCAGGAGGTGGCTGAGCTAAGGGAAGAGCTGCAAGCTCGAGGACCAGGGGgtaaggacctacttggatccaaccacgaggcctacactcatggggaccag Alignment from Exonerate_coding2genome CCGCCTGCAGGAGGCTGAG-AAGCAAAGTCAGGCCCTG---CAGCAGGAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGG ggagtgaaacacttttcaaggccctgcacctcttattttcttttttgcagCCGCCTGCAGGAAGCTGAGCACACAAAGTGAGGCACTCCAGCAGCAGGAGGTGGCTGAGCTAAGGGAAGAGCTGCAAGCTCGAGGACCAGGGGgtaaggacctacttggatccaaccacgaggcctacactcatggggaccag Alignment from GeneWise CCGCCTGCAGGAGGCTGAGAAGCAAAGTCAGGCCCTGCAGCAG---GAGGTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGG ggagtgaaacacttttcaaggccctgcacctcttattttcttttttgcagccgcctgcagGAAGCTGAGCACA---------CAAAGTGAGGCACTCCAGCAGCAGGAGGTGGCTGAGCTAAGGGAAGAGCTGCAAGCTCGAGGACCAGGGGgtaaggacctacttggatccaaccacgaggcctacactcatggggaccag #### Cdc42bpg_ID1592_22 --> 0 - 0 Original Alignment AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGG-CCAGAGGGCCGCCGCAGTCTGCGCATGGGG ctgatgacaaacataaatcctgacactcttggattatcacatttgattagAAAGATTTTGCTAAAGACCCAGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCGGAAGCAGAGCTTAGGCCCAGAGGGCCGCCGCAGTCTGCGCATGGGTgtaagttctataaccagccagaataaaaataggtgggatttctacattga Alignment from CESAR AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGG-CCAGAGGGCCGCCGCAGTCTGCGCATGGGG ctgatgacaaacataaatcctgacactcttggattatcacatttgattagAAAGATTTTGCTAAAGACCCAGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCGGAAGCAGAGCTTAGGCCCAGAGGGCCGCCGCAGTCTGCGCATGGGTgtaagttctataaccagccagaataaaaataggtgggatttctacattga Alignment from Spaln_aa2Genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGG-CCAGAGGGCCGCCGCAGTCTGCGCATGGGG ctgatgacaaacataaatcctgacactcttggattatcacatttgattagAAAGATTTTGCTAAAGACCCAGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCGGAAGCAGAGCTTAGGcCCAGAGGGCCGCCGCAGTCTGCGCATGGGTgtaagttctataaccagccagaataaaaataggtgggatttctacattga Alignment from Spaln_nt2Genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGG-CCAGAGGGCCGCCGCAGTCTGCGCATGGGG ctgatgacaaacataaatcctgacactcttggattatcacatttgattagAAAGATTTTGCTAAAGACCCAGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCGGAAGCAGAGCTTAGGCCCAGAGGGCCGCCGCAGTCTGCGCATGGGTgtaagttctataaccagccagaataaaaataggtgggatttctacattga Alignment from Pairagon AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGG-CCAGAGGGCCGCCGCAGTCTGCGCATGGGG ctgatgacaaacataaatcctgacactcttggattatcacatttgattagAAAGATTTTGCTAAAGACCCAGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCGGAAGCAGAGCTTAGGCCCAGAGGGCCGCCGCAGTCTGCGCATGGGTgtaagttctataaccagccagaataaaaataggtgggatttctacattga Alignment from Exonerate_protein2genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGG-CCAGAGGGCCGCCGCAGTCTGCGCATGGGG ctgatgacaaacataaatcctgacactcttggattatcacatttgattagAAAGATTTTGCTAAAGACCCAGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCGGAAGCAGAGCTTAGGCCCAGAGGGCCGCCGCAGTCTGCGCATGGGTgtaagttctataaccagccagaataaaaataggtgggatttctacattga Alignment from Exonerate_coding2genome AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGG-CCAGAGGGCCGCCGCAGTCTGCGCATGGGG ctgatgacaaacataaatcctgacactcttggattatcacatttgattagAAAGATTTTGCTAAAGACCCAGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCGGAAGCAGAGCTTAGGCCCAGAGGGCCGCCGCAGTCTGCGCATGGGTgtaagttctataaccagccagaataaaaataggtgggatttctacattga Alignment from GeneWise AAGGATTCTGCCAAGGACCCTGGCAATTCAGGAGAGGGTCCAAGGTCTGGAGCCGAAGCAGAGCTGAGGCCA-GAGGGCCGCCGCAGTCTGCGCATGGGG ctgatgacaaacataaatcctgacactcttggattatcacatttgattagAAAGATTTTGCTAAAGACCCAGGCAATTCAGCTGAGGGTCCAAGGTCTGGAGCGGAAGCAGAGCTTAGGCCCAGAGGGCCGCCGCAGTCTGCGCATGGGTgtaagttctataaccagccagaataaaaataggtgggatttctacattga #### Cdc42bpg_ID1595_25 --> 2 - 0 Original Alignment ccTGTGGCTACTTCTGTCAC-TCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG GTGCCGCGGCC tatacttatgagtggacttttgttcccctcttcactttctttcacaacagccTGTGGCTATTTCTGTCATCTCAGCCTGTGCATCACAAACCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGTACAGCCTTGGGGGTGCACCCTGAAAAAGGCACAGGGACAGCCTATGAGGGCTTTCTGTCAgtgagctgagggggctgtgaacctcatttttttttttagGTACGACAGCC Alignment from CESAR ccTGTGGCTACTTCTGTCAC-TCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG GTGCCGCGGCC tatacttatgagtggacttttgttcccctcttcactttctttcacaacagccTGTGGCTATTTCTGTCATCTCAGCCTGTGCATCACAAACCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGTACAGCCTTGGGGGTGCACCCTGAAAAAGGCACAGGGACAGCCTATGAGGGCTTTCTGTCAgtgagctgagggggctgctcatgattttctgtttttcagGTACGACAGCC Alignment from Spaln_aa2Genome CCTGTGGCTACTTCTGTCAC-TCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG GTGCCGCGGCC tatacttatgagtggacttttgttcccctcttcactttctttcacaacagCCTGTGGCTATTTCTGTCATcTCAGCCTGTGCATCACAAACCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGTACAGCCTTGGGGGTGCACCCTGAAAAAGGCACAGGGACAGCCTATGAGGGCTTTCTGTCAgtgagctgagggggctgtgaacctcatttttttttttagGTACGACAGCC Alignment from Spaln_nt2Genome CCTGTGGCTACTTCTGTCA-CTCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG GTGCCGCGGCC tatacttatgagtggacttttgttcccctcttcactttctttcacaacagCCTGTGGCTATTTCTGTCATCTCAGCCTGTGCATCACAAACCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGTACAGCCTTGGGGGTGCACCCTGAAAAAGGCACAGGGACAGCCTATGAGGGCTTTCTGTCAgtgagctgagggggctgtgaacctcatttttttttttagGTACGACAGCC Alignment from Pairagon CCTGTGGCTACTTCTGTCA-CTCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG GTGCCGCGGCC tatacttatgagtggacttttgttcccctcttcactttctttcacaacagCCTGTGGCTATTTCTGTCATCTCAGCCTGTGCATCACAAACCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGTACAGCCTTGGGGGTGCACCCTGAAAAAGGCACAGGGACAGCCTATGAGGGCTTTCTGTCAgtgagctgagggggctgtgaacctcatttttttttttagGTACGACAGCC Alignment from Exonerate_protein2genome CCTGTGGCTACTTCTGTCAC-TCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG GTGCCGCGGCC tatacttatgagtggacttttgttcccctcttcactttctttcacaacagCCTGTGGCTATTTCTGTCATCTCAGCCTGTGCATCACAAACCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGTACAGCCTTGGGGGTGCACCCTGAAAAAGGCACAGGGACAGCCTATGAGGGCTTTCTGTCAgtgagctgagggggctgtgaacctcatttttttttttagGTACGACAGCC Alignment from Exonerate_coding2genome CCTGTGGCTACTTCTGTCAC-TCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG GTGCCGCGGCC tatacttatgagtggacttttgttcccctcttcactttctttcacaacagCCTGTGGCTATTTCTGTCATCTCAGCCTGTGCATCACAAACCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGTACAGCCTTGGGGGTGCACCCTGAAAAAGGCACAGGGACAGCCTATGAGGGCTTTCTGTCAgtgagctgagggggctgtgaacctcatttttttttttagGTACGACAGCC Alignment from GeneWise CCTGTGGCTACTTCTGTCAC-TCAGCTTGTGCGTCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG GTGCCGCGGCC tatacttatgagtggacttttgttcccctcttcactttctttcacaacagCCTGTGGCTATTTCTGTCATCTCAGCCTGTGCATCACAAACCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGTACAGCCTTGGGGGTGCACCCTGAAAAAGGCACAGGGACAGCCTATGAGGGCTTTCTGTCAgtgagctgagggggctgtgaacctcatttttttttttagGTACGACAGCC #### Cdc42bpg_ID1601_31 --> 2 - 0 Original Alignment gtTACACAGCACCCTACCTAACAGTG-TTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCGCTCAAGAAG ggaactcacttgcccagtactatacactgtaactgttttcttatctgtaggtTACACAGCGCCCTACCTAACTGTGCTTCAGTGAAAACACCCTCGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTACCACTCAAGAAGgtaaaagttagcccaggttgtcaagttggtccattgagtgggaatttttt Alignment from CESAR gtTACACAGCACCCTACCTAACAGTG-TTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCGCTCAAGAAG ggaactcacttgcccagtactatacactgtaactgttttcttatctgtaggtTACACAGCGCCCTACCTAACTGTGCTTCAGTGAAAACACCCTCGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTACCACTCAAGAAGgtaaaagttagcccaggttgtcaagttggtccattgagtgggtttttttt Alignment from Spaln_aa2Genome GTTACACAGCACCCTACCTAACAGTG-TTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCGCTCAAGAAG ggaactcacttgcccagtactatacactgtaactgttttcttatctgtagGTTACACAGCGCCCTACCTAACTGTGcTTCAGTGAAAACACCCTCGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTACCACTCAAGAAGgtaaaagttagcccaggttgtcaagttggtccattgagtgggaatttttt Alignment from Spaln_nt2Genome GTTACACAGCACCCTACCTAACAGTG-TTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCGCTCAAGAAG ggaactcacttgcccagtactatacactgtaactgttttcttatctgtagGTTACACAGCGCCCTACCTAACTGTGCTTCAGTGAAAACACCCTCGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTACCACTCAAGAAGgtaaaagttagcccaggttgtcaagttggtccattgagtgggaatttttt Alignment from Pairagon GTTACACAGCACCCTACCTAACAGTG-TTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCGCTCAAGAAG ggaactcacttgcccagtactatacactgtaactgttttcttatctgtagGTTACACAGCGCCCTACCTAACTGTGCTTCAGTGAAAACACCCTCGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTACCACTCAAGAAGgtaaaagttagcccaggttgtcaagttggtccattgagtgggaatttttt Alignment from Exonerate_protein2genome GTTACACAGCACCCTACCTAACAGTG-TTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCGCTCAAGAAG ggaactcacttgcccagtactatacactgtaactgttttcttatctgtagGTTACACAGCGCCCTACCTAACTGTGCTTCAGTGAAAACACCCTCGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTACCACTCAAGAAGgtaaaagttagcccaggttgtcaagttggtccattgagtgggaatttttt Alignment from Exonerate_coding2genome GTTACACAGCACCCTACCTAACAGTG-TTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCGCTCAAGAAG ggaactcacttgcccagtactatacactgtaactgttttcttatctgtagGTTACACAGCGCCCTACCTAACTGTGCTTCAGTGAAAACACCCTCGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTACCACTCAAGAAGgtaaaagttagcccaggttgtcaagttggtccattgagtgggaatttttt Alignment from GeneWise GTTACACAGCACCCTACCTAACA-GTGTTCAGTGAAAACGCCCTTGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTGCCGCTCAAGAAG ggaactcacttgcccagtactatacactgtaactgttttcttatctgtagGTTACACAGCGCCCTACCTAACTGTGCTTCAGTGAAAACACCCTCGATGTGTTTGACGTGAGGAGAGCAGAATGGGTACAGACTGTACCACTCAAGAAGgtaaaagttagcccaggttgtcaagttggtccattgagtgggaatttttt #### Cdc42bpg_ID1603_33 --> 2 - 2 Original Alignment agAAGGACGAGTTTGACATTCCCGACCTCACGGACAAC-AGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCag aggcctacagctacaagtgaacagctccttcttttttttttcctcaacagaaAAGGATGAGTTTGAGATTCCTGACCTGACA---AACCAGCCGGCGCCAGCTCTTCCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGCGTGTCTGATGAGCTGCAACAGCAACAGCGTaggtgagtgactacgtggcaggcctggctactggctgggggactttccattc Alignment from CESAR agAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCag aggcctacagctacaagtgaacagctccttcttttttttttcctcaacagaaAAGGATGAGTTTGAGATTCCTGACCTGACAAAC--CAGCCGGCGCCAGCTCTTCCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGCGTGTCTGATGAGCTGCAACAGCAACAGCGTaggtgagtgactacgtggcaggcctggctactggctgggggactttccattc Alignment from Spaln_aa2Genome AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG aggcctacagctacaagtgaacagctccttcttttttttttcctcaacagAAAAGGATGAGTTTGAGATTCCTGACCTGACAAACC--AGCCGGCGCCAGCTCTTCCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGCGTGTCTGATGAGCTGCAACAGCAACAGCGTAGgtgagtgactacgtggcaggcctggctactggctgggggactttccattc Alignment from Spaln_nt2Genome AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG aggcctacagctacaagtgaacagctccttcttttttttttcctcaacagAAAAGGATGAGTTTGAGATTCCTGACCTGAC--AAACCAGCCGGCGCCAGCTCTTCCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGCGTGTCTGATGAGCTGCAACAGCAACAGCGTAGgtgagtgactacgtggcaggcctggctactggctgggggactttccattc Alignment from Pairagon AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG aggcctacagctacaagtgaacagctccttcttttttttttcctcaacagAAAAGGATGAGTTTGAGATTCCTGACCTGACAAAC--CAGCCGGCGCCAGCTCTTCCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGCGTGTCTGATGAGCTGCAACAGCAACAGCGTAGgtgagtgactacgtggcaggcctggctactggctgggggactttccattc Alignment from Exonerate_protein2genome AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAAC-AGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG aggcctacagctacaagtgaacagctccttcttttttttttcctcaacagAAAAGGATGAGTTTGAGATTCCTGACCTGACA---AACCAGCCGGCGCCAGCTCTTCCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGCGTGTCTGATGAGCTGCAACAGCAACAGCGTAGgtgagtgactacgtggcaggcctggctactggctgggggactttccattc Alignment from Exonerate_coding2genome AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAAC-AGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG aggcctacagctacaagtgaacagctccttcttttttttttcctcaacagAAAAGGATGAGTTTGAGATTCCTGACCTGACA---AACCAGCCGGCGCCAGCTCTTCCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGCGTGTCTGATGAGCTGCAACAGCAACAGCGTAGgtgagtgactacgtggcaggcctggctactggctgggggactttccattc Alignment from GeneWise AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG aggcctacagctacaagtgaacagctccttcttttttttttcctcaacagAAAAGGATGAGTTTGAGATTCCTGACCTGACAAACC--AGCCGGCGCCAGCTCTTCCGGAGCAAGAGTAAGCGCCGTTTCTTCTTCCGCGTGTCTGATGAGCTGCAACAGCAACAGCGTAGgtgagtgactacgtggcaggcctggctactggctgggggactttccattc #### Cdca5_ID1429_3 --> 0 - 0 Original Alignment ACAACTCCAGCGGTCCCA-GTCAGAAAGGCCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAG ctttgttttatgcctcccaaacaactccttctcctgcctctggttttcagATGACTCCCACCGTCCCACGTTAGAAAAGCCATTATCTTGAAAAAGATAGTCGCCCATGCAGTTGAGgtaagtggctgagagataacttgcaagtgagatgtccgaaaaggccttag Alignment from CESAR ACAACTCCAGCGGTCCCA-GTCAGAAAGGCCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAG ctttgttttatgcctcccaaacaactccttctcctgcctctggttttcagATGACTCCCACCGTCCCACGTTAGAAAAGCCATTATCTTGAAAAAGATAGTCGCCCATGCAGTTGAGgtaagtggctgagagataacttgcaagtgagatgtccgaaaaggccttag Alignment from Spaln_aa2Genome ACAACTCCAGCGGTCCCA-GTCAGAAAGGCCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAG ctttgttttatgcctcccaaacaactccttctcctgcctctggttttcagATGACTCCCACCGTCCCAcGTTAGAAAAGCCATTATCTTGAAAAAGATAGTCGCCCATGCAGTTGAGgtaagtggctgagagataacttgcaagtgagatgtccgaaaaggccttag Alignment from Spaln_nt2Genome ACAACTCCAGCGGTCCCA-GTCAGAAAGGCCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAG ctttgttttatgcctcccaaacaactccttctcctgcctctggttttcagATGACTCCCACCGTCCCACGTTAGAAAAGCCATTATCTTGAAAAAGATAGTCGCCCATGCAGTTGAGgtaagtggctgagagataacttgcaagtgagatgtccgaaaaggccttag Alignment from Pairagon ACAACTCCAGCGGTCCCA-GTCAGAAAGGCCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAG ctttgttttatgcctcccaaacaactccttctcctgcctctggttttcagATGACTCCCACCGTCCCACGTTAGAAAAGCCATTATCTTGAAAAAGATAGTCGCCCATGCAGTTGAGgtaagtggctgagagataacttgcaagtgagatgtccgaaaaggccttag Alignment from Exonerate_protein2genome ACAACTCCAGCGGTCCCA-GTCAGAAAGGCCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAG ctttgttttatgcctcccaaacaactccttctcctgcctctggttttcagATGACTCCCACCGTCCCACGTTAGAAAAGCCATTATCTTGAAAAAGATAGTCGCCCATGCAGTTGAGgtaagtggctgagagataacttgcaagtgagatgtccgaaaaggccttag Alignment from Exonerate_coding2genome AGGACAACTCCAGCGGTCCCAGTCAGAAAGGCCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAG ctttgttttatgcctcccaaacaactccttctcctgcctctggttttcAGATGACTCCCACCGTCCCACGTTAGAAAAGCCATTATCTTGAAAAAGATAGTCGCCCATGCAGTTGAGgtaagtggctgagagataacttgcaagtgagatgtccgaaaaggccttag Alignment from GeneWise CAGAAAGGCCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAG ctttgttttatgcctcccaaacaactccttctcctgcctctggttttcagatgactcccaccgtcccacgttagA---AAAGCCATTATCTTGAAAAAGATAGTCGCCCATGCAGTTGAGgtaagtggctgagagataacttgcaagtgagatgtccgaaaaggccttag #### Cep78_ID3983_3 --> 0 - 1 Original Alignment GGACTGAGTAAATCA-ACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAa aggctgttctcaatgggcagatacctaagcagcaatgccttctcatttagGGACTGAGTAAATCACACCTCTCTGGTGCACCTGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGTTTAGAAagtgggatgataaatttaacaatcatcttggtgggctggctgtattcttgg Alignment from CESAR GGACTGAGTAAATCA-ACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAa aggctgttctcaatgggcagatacctaagcagcaatgccttctcatttagGGACTGAGTAAATCACACCTCTCTGGTGCACCTGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGTTTAGAAagtgggatgataaatttaacaatcatcttggtgggctggctgtattcttgg Alignment from Spaln_aa2Genome GGACTGAGTAAATCA-ACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA aggctgttctcaatgggcagatacctaagcagcaatgccttctcatttagGGACTGAGTAAATCAcACCTCTCTGGTGCACCTGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGTTTAGAAAgtgggatgataaatttaacaatcatcttggtgggctggctgtattcttgg Alignment from Spaln_nt2Genome GGACTGAGTAAATCA-ACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA aggctgttctcaatgggcagatacctaagcagcaatgccttctcatttagGGACTGAGTAAATCACACCTCTCTGGTGCACCTGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGTTTAGAAAgtgggatgataaatttaacaatcatcttggtgggctggctgtattcttgg Alignment from Pairagon GGACTGAGTAAATCA-ACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA aggctgttctcaatgggcagatacctaagcagcaatgccttctcatttagGGACTGAGTAAATCACACCTCTCTGGTGCACCTGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGTTTAGAAAgtgggatgataaatttaacaatcatcttggtgggctggctgtattcttgg Alignment from Exonerate_protein2genome GGACTGAGTAAATCA-ACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA aggctgttctcaatgggcagatacctaagcagcaatgccttctcatttagGGACTGAGTAAATCACACCTCTCTGGTGCACCTGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGTTTAGAAAgtgggatgataaatttaacaatcatcttggtgggctggctgtattcttgg Alignment from Exonerate_coding2genome GGACTGAGTAAATCA-ACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA aggctgttctcaatgggcagatacctaagcagcaatgccttctcatttagGGACTGAGTAAATCACACCTCTCTGGTGCACCTGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGTTTAGAAAgtgggatgataaatttaacaatcatcttggtgggctggctgtattcttgg Alignment from GeneWise GGACTGAGTAAA-TCAACCTCTTTGGTGCACTTGTCTCTTGCAAATTGTCCAATTGGAGATGGAGGTTTAGAAA aggctgttctcaatgggcagatacctaagcagcaatgccttctcatttagGGACTGAGTAAATCACACCTCTCTGGTGCACCTGTCTCTTGCAAATTGCCCAATTGGAGATGGAGGTTTAGAAAgtgggatgataaatttaacaatcatcttggtgggctggctgtattcttgg #### Cfl1_ID1061_3 --> 1 - 1 Original Alignment gGCCCCCGAGAATGCACCCCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGCC-ATCAAGAAGAAGCTGACAg ttgagactatttgggatgtagttacaacttttgtccctgttgccatgaaggGCCCCTGTAAATGCCCCCCTAAAAAGCAAAATGATCTATGCAAGCTCCAAAGACGTGCATCAAGAGGAAGCTGACAggtacgtatccccgctttcaccaaaaacaattcatatagtctccctgctag Alignment from CESAR gGCCCCCGAGAATGCACCCCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGCC-ATCAAGAAGAAGCTGACAg ttgagactatttgggatgtagttacaacttttgtccctgttgccatgaaggGCCCCTGTAAATGCCCCCCTAAAAAGCAAAATGATCTATGCAAGCTCCAAAGACGTGCATCAAGAGGAAGCTGACAggtacgtatccccgctttcaccaaaaacaattcatatagtctccctgctag Alignment from Spaln_aa2Genome GGCCCCCGAGAATGCACCCCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGCC-ATCAAGAAGAAGCTGACAG ttgagactatttgggatgtagttacaacttttgtccctgttgccatgaagGGCCCCTGTAAATGCCCCCCTAAAAAGCAAAATGATCTATGCAAGCTCCAAAGACGTGcATCAAGAGGAAGCTGACAGgtacgtatccccgctttcaccaaaaacaattcatatagtctccctgctag Alignment from Spaln_nt2Genome GGCCCCCGAGAATGCACCCCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGC-CATCAAGAAGAAGCTGACAG ttgagactatttgggatgtagttacaacttttgtccctgttgccatgaagGGCCCCTGTAAATGCCCCCCTAAAAAGCAAAATGATCTATGCAAGCTCCAAAGACGTGCATCAAGAGGAAGCTGACAGgtacgtatccccgctttcaccaaaaacaattcatatagtctccctgctag Alignment from Pairagon GGCCCCCGAGAATGCACCCCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGATGC-CATCAAGAAGAAGCTGACAG ttgagactatttgggatgtagttacaacttttgtccctgttgccatgaagGGCCCCTGTAAATGCCCCCCTAAAAAGCAAAATGATCTATGCAAGCTCCAAAGACGTGCATCAAGAGGAAGCTGACAGgtacgtatccccgctttcaccaaaaacaattcatatagtctccctgctag Alignment from Exonerate_protein2genome GGCCCCCGAGAATGCACCCCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGAT-GCCATCAAGAAGAAGCTGACAG ttgagactatttgggatgtagttacaacttttgtccctgttgccatgaagGGCCCCTGTAAATGCCCCCCTAAAAAGCAAAATGATCTATGCAAGCTCCAAAGACGTGCATCAAGAGGAAGCTGACAGgtacgtatccccgctttcaccaaaaacaattcatatagtctccctgctag Alignment from Exonerate_coding2genome GGCCCCCGAGAATGCACCCCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGAT-GCCATCAAGAAGAAGCTGACAG ttgagactatttgggatgtagttacaacttttgtccctgttgccatgaagGGCCCCTGTAAATGCCCCCCTAAAAAGCAAAATGATCTATGCAAGCTCCAAAGACGTGCATCAAGAGGAAGCTGACAGgtacgtatccccgctttcaccaaaaacaattcatatagtctccctgctag Alignment from GeneWise GGCCCCCGAGAATGCACCCCTCAAGAGCAAAATGATCTATGCCAGCTCCAAGGAT-GCCATCAAGAAGAAGCTGACAG ttgagactatttgggatgtagttacaacttttgtccctgttgccatgaagGGCCCCTGTAAATGCCCCCCTAAAAAGCAAAATGATCTATGCAAGCTCCAAAGACGTGCATCAAGAGGAAGCTGACAGgtacgtatccccgctttcaccaaaaacaattcatatagtctccctgctag #### Chuk_ID8920_8 --> 1 - 2 Original Alignment gCATGAGAAGATTAAGAAGAAAGAT-CCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTag gagaagtacttgtatgaatcaggctgtcttctctattgctttttacacaggCATGAGAAGATTAAGAAGAAAGATCCCAAAGTGTATATTTGCGTGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTaggtgagcgatggtcagagtctttgggagtaggtcccttatctactcatagt Alignment from CESAR gCATGAGAAGATTAAGAAGAAAGAT-CCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTag gagaagtacttgtatgaatcaggctgtcttctctattgctttttacacaggCATGAGAAGATTAAGAAGAAAGATCCCAAAGTGTATATTTGCGTGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTaggtgagcgatggtcagagtctttgggagtaggtcccttatctactcatagt Alignment from Spaln_aa2Genome GCATGAGAAGATTAAGAAGAAAGATCCA-AAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAG gagaagtacttgtatgaatcaggctgtcttctctattgctttttacacagGCATGAGAAGATTAAGAAGAAAGATCCCaAAGTGTATATTTGCGTGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAGgtgagcgatggtcagagtctttgggagtaggtcccttatctactcatagt Alignment from Spaln_nt2Genome GCATGAGAAGATTAAGAAGAAAGAT-CCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAG gagaagtacttgtatgaatcaggctgtcttctctattgctttttacacagGCATGAGAAGATTAAGAAGAAAGATCCCAAAGTGTATATTTGCGTGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAGgtgagcgatggtcagagtctttgggagtaggtcccttatctactcatagt Alignment from Pairagon GCATGAGAAGATTAAGAAGAAAGAT-CCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAG gagaagtacttgtatgaatcaggctgtcttctctattgctttttacacagGCATGAGAAGATTAAGAAGAAAGATCCCAAAGTGTATATTTGCGTGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAGgtgagcgatggtcagagtctttgggagtaggtcccttatctactcatagt Alignment from Exonerate_protein2genome GCATGAGAAGATTAAGAAGAAAGAT-CCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAG gagaagtacttgtatgaatcaggctgtcttctctattgctttttacacagGCATGAGAAGATTAAGAAGAAAGATCCCAAAGTGTATATTTGCGTGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAGgtgagcgatggtcagagtctttgggagtaggtcccttatctactcatagt Alignment from Exonerate_coding2genome GCATGAGAAGATTAAGAAGAAAGAT-CCAAAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAG gagaagtacttgtatgaatcaggctgtcttctctattgctttttacacagGCATGAGAAGATTAAGAAGAAAGATCCCAAAGTGTATATTTGCGTGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAGgtgagcgatggtcagagtctttgggagtaggtcccttatctactcatagt Alignment from GeneWise GCATGAGAAGATTAAGAAGAAAGATCCA-AAGTGTATATTTGCATGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAG gagaagtacttgtatgaatcaggctgtcttctctattgctttttacacagGCATGAGAAGATTAAGAAGAAAGATCCCAAAGTGTATATTTGCGTGTGAAGAGATGACTGGAGAAGTTCGGTTTAGTAGCCATTTACCTCAGCCAAACAGCCTTTGTAGgtgagcgatggtcagagtctttgggagtaggtcccttatctactcatagt #### Col17a1_ID10272_50 --> 2 - 1 Original Alignment ccTACGGCACTATCCCGGGACCACCTGGGCAGAAGGGAGATGTG-GGAACCCCAGGCCCCAAAg agctaatgatactatatgagccttgaagcatcttttttcctttcttccagccTATGGTACTATTCCAGGTCCACCTGGCCAGAAAGGAGACGTACGGGACCCCAGGCCCCAAAggtaacggtgccaaatctatagtttagttgatatagtttagttgataatgc Alignment from CESAR ccTACGGCACTATCCCGGGACCACCTGGGCAGAAGGGAGATGTG-GGAACCCCAGGCCCCAAAg agctaatgatactatatgagccttgaagcatcttttttcctttcttccagccTATGGTACTATTCCAGGTCCACCTGGCCAGAAAGGAGACGTACGGGACCCCAGGCCCCAAAggtaacggtgccaaatctatagtttagttgatatagtttagttgataatgc Alignment from Spaln_aa2Genome CCTACGGCACTATCCCGGGACCACCTGGGCAGAAGGGAGATGTG-GGAACCCCAGGCCCCAAAG agctaatgatactatatgagccttgaagcatcttttttcctttcttccagCCTATGGTACTATTCCAGGTCCACCTGGCCAGAAAGGAGACGTAcGGGACCCCAGGCCCCAAAGgtaacggtgccaaatctatagtttagttgatatagtttagttgataatgc Alignment from Spaln_nt2Genome CCTACGGCACTATCCCGGGACCACCTGGGCAGAAGGGAGATGTG-GGAACCCCAGGCCCCAAAG agctaatgatactatatgagccttgaagcatcttttttcctttcttccagCCTATGGTACTATTCCAGGTCCACCTGGCCAGAAAGGAGACGTACGGGACCCCAGGCCCCAAAGgtaacggtgccaaatctatagtttagttgatatagtttagttgataatgc Alignment from Pairagon CCTACGGCACTATCCCGGGACCACCTGGGCAGAAGGGAGATGTG-GGAACCCCAGGCCCCAAAG agctaatgatactatatgagccttgaagcatcttttttcctttcttccagCCTATGGTACTATTCCAGGTCCACCTGGCCAGAAAGGAGACGTACGGGACCCCAGGCCCCAAAGgtaacggtgccaaatctatagtttagttgatatagtttagttgataatgc Alignment from Exonerate_protein2genome CCTACGGCACTATCCCGGGACCACCTGGGCAGAAGGGAGATGTG-GGAACCCCAGGCCCCAAAG agctaatgatactatatgagccttgaagcatcttttttcctttcttccagCCTATGGTACTATTCCAGGTCCACCTGGCCAGAAAGGAGACGTACGGGACCCCAGGCCCCAAAGgtaacggtgccaaatctatagtttagttgatatagtttagttgataatgc Alignment from Exonerate_coding2genome agctaatgatactatatgagccttgaagcatcttttttcctttcttccagcctatggtactattccaggtccacctggccagaaaggagacgtacgggaccccaggccccaaaggtaacggtgccaaatctatagtttagttgatatagtttagttgataatgc Alignment from GeneWise CCTACGGCACTATCCCGGGACCACCTGGGCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAGG agctaatgatactatatgagccttgaagcatcttttttcctttcttccagCCTATGGTACTATTCCAGGTCCACCTGGCCAGAAAGGAGACGTACGGGACCCCAGGCCCCAAAGgtaacggtgccaaatctatagtttagttgatatagtttagttgataatgc #### Col17a1_ID10275_47 --> 2 - 1 Original Alignment ccGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCC-CCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAa agctcctgtcctgcttcatgttctttctatcatttttctcctcctattagccGCGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCACCCAGGTCCTCGAGGGCCTCCAGGGGTCTCAACAGCTTTGTCTACGTATGCAGCAGAAAACAGTGATAACTTCCGAAGTGAGCTGATTAGCTACCTCACAagtacgtaccctgggtgcttcctgtccccctccagagacacctagtcttct Alignment from CESAR ccGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCC-CCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAa agctcctgtcctgcttcatgttctttctatcatttttctcctcctattagccGCGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCACCCAGGTCCTCGAGGGCCTCCAGGGGTCTCAACAGCTTTGTCTACGTATGCAGCAGAAAACAGTGATAACTTCCGAAGTGAGCTGATTAGCTACCTCACAagtacgtaccctgggtgcttcctgtccccctccagagacacctagtcttct Alignment from Spaln_aa2Genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCC-CCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA agctcctgtcctgcttcatgttctttctatcatttttctcctcctattagCCGCGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCAcCCAGGTCCTCGAGGGCCTCCAGGGGTCTCAACAGCTTTGTCTACGTATGCAGCAGAAAACAGTGATAACTTCCGAAGTGAGCTGATTAGCTACCTCACAAgtacgtaccctgggtgcttcctgtccccctccagagacacctagtcttct Alignment from Spaln_nt2Genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCC-CCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA agctcctgtcctgcttcatgttctttctatcatttttctcctcctattagCCGCGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCACCCAGGTCCTCGAGGGCCTCCAGGGGTCTCAACAGCTTTGTCTACGTATGCAGCAGAAAACAGTGATAACTTCCGAAGTGAGCTGATTAGCTACCTCACAAgtacgtaccctgggtgcttcctgtccccctccagagacacctagtcttct Alignment from Pairagon CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCC-CCCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA agctcctgtcctgcttcatgttctttctatcatttttctcctcctattagCCGCGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCACCCAGGTCCTCGAGGGCCTCCAGGGGTCTCAACAGCTTTGTCTACGTATGCAGCAGAAAACAGTGATAACTTCCGAAGTGAGCTGATTAGCTACCTCACAAgtacgtaccctgggtgcttcctgtccccctccagagacacctagtcttct Alignment from Exonerate_protein2genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCC-CCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA agctcctgtcctgcttcatgttctttctatcatttttctcctcctattagCCGCGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCACCCAGGTCCTCGAGGGCCTCCAGGGGTCTCAACAGCTTTGTCTACGTATGCAGCAGAAAACAGTGATAACTTCCGAAGTGAGCTGATTAGCTACCTCACAAgtacgtaccctgggtgcttcctgtccccctccagagacacctagtcttct Alignment from Exonerate_coding2genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCC-CCAGGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA agctcctgtcctgcttcatgttctttctatcatttttctcctcctattagCCGCGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCACCCAGGTCCTCGAGGGCCTCCAGGGGTCTCAACAGCTTTGTCTACGTATGCAGCAGAAAACAGTGATAACTTCCGAAGTGAGCTGATTAGCTACCTCACAAgtacgtaccctgggtgcttcctgtccccctccagagacacctagtcttct Alignment from GeneWise CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCA-GGTCCTCGAGGGCCCCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA agctcctgtcctgcttcatgttctttctatcatttttctcctcctattagCCGCGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCACCCAGGTCCTCGAGGGCCTCCAGGGGTCTCAACAGCTTTGTCTACGTATGCAGCAGAAAACAGTGATAACTTCCGAAGTGAGCTGATTAGCTACCTCACAAgtacgtaccctgggtgcttcctgtccccctccagagacacctagtcttct #### Col17a1_ID10276_46 --> 2 - 1 Original Alignment gtTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAG-CTACTGACCATGCTCCGAg accagagttctctggaaattcttcttactgactctgcatcctccccacaggtGCTGGCATTAGTTTTGGACATCCTGGCCCACCT---------------GCTGGAACATCTTATGAAGAGCTTACTGTCCATGCTTAAAggtaagccaaaacccaaatgtccatcaactcaggatggtgcatcctggcta Alignment from CESAR gtTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTA-CTGACCATGCTCCGAg accagagttctctggaaattcttcttactgactctgcatcctccccacaggtGCTGGCATTAGTTTTGGACATCCTGGCCCACCT---------------GCTGGAACATCTTATGAAGAGCTTACTGTCCATGCTTAAAggtaagccaaaacccaaatgtccatcaactcaggatggtgcatcctggcta Alignment from Spaln_aa2Genome GTTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTA-CTGACCATGCTCCGAG accagagttctctggaaattcttcttactgactctgcatcctccccacagGTGCTGGCATTAGTTTTGGACATCCTGGCCCACCT---------------GCTGGAACATCTTATGAAGAGCTTaCTGTCCATGCTTAAAGgtaagccaaaacccaaatgtccatcaactcaggatggtgcatcctggcta Alignment from Spaln_nt2Genome GTTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCT-ACTGACCATGCTCCGAG accagagttctctggaaattcttcttactgactctgcatcctccccacagGTGCTGGCATTAGTTTTGGACATCCTGGCCCACCTG---------------CTGGAACATCTTATGAAGAGCTTACTGTCCATGCTTAAAGgtaagccaaaacccaaatgtccatcaactcaggatggtgcatcctggcta Alignment from Pairagon GTTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGC-TACTGACCATGCTCCGAG accagagttctctggaaattcttcttactgactctgcatcctccccacagGTGCTGGCATTAGTTTTGGACATCCTGGCCCACCTG---------------CTGGAACATCTTATGAAGAGCTTACTGTCCATGCTTAAAGgtaagccaaaacccaaatgtccatcaactcaggatggtgcatcctggcta Alignment from Exonerate_protein2genome GTTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAG-CTACTGACCATGCTCCGAG accagagttctctggaaattcttcttactgactctgcatcctccccacagGTGCTGGCATTAGTTTTGGACATCCTGGCCCACCTGCT---------------GGAACATCTTATGAAGAGCTTACTGTCCATGCTTAAAGgtaagccaaaacccaaatgtccatcaactcaggatggtgcatcctggcta Alignment from Exonerate_coding2genome GTTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAG-CTACTGACCATGCTCCGAG accagagttctctggaaattcttcttactgactctgcatcctccccacagGTGCTGGCATTAGTTTTGGACATCCTGGCCCACCTGCT---------------GGAACATCTTATGAAGAGCTTACTGTCCATGCTTAAAGgtaagccaaaacccaaatgtccatcaactcaggatggtgcatcctggcta Alignment from GeneWise GTTCTGGGATCAGCTTTGGGCATCCTGGCCCACCGGGACCCCCTGGCCTGCCAGGAACATCCTACGAGGAGCTA-CTGACCATGCTCCGAG accagagttctctggaaattcttcttactgactctgcatcctccccacagGTGCTGGCATTAGTTTTGGACATCCTGGCCCACCTGCT---------------GGAACATCTTATGAAGAGCTTACTGTCCATGCTTAAAGgtaagccaaaacccaaatgtccatcaactcaggatggtgcatcctggcta #### Col17a1_ID10278_44 --> 2 - 1 Original Alignment caTCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCC-TCCTCAGAAGATATCTTGGCCATGCTGCGAc gaaatgcatatttagttctacacacgcttttgaggtgccttaaccctcagctTCAGGATATAGTGCTGGCTTGTCCTCTGCTTCCCTCATCAGAGGATATCTTGGCCATGCTGCGAcgtgagcaccttccaacaggcaggattaggttcttttacctaccacctatc Alignment from CESAR caTCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCC-TCCTCAGAAGATATCTTGGCCATGCTGCGAc gaaatgcatatttagttctacacacgcttttgaggtgccttaaccctcagctTCAGGATATAGTGCTGGCTTGTCCTCTGCTTCCCTCATCAGAGGATATCTTGGCCATGCTGCGAcgtgagcaccttccaacaggcaggattaggttcttttacctaccacctatc Alignment from Spaln_aa2Genome CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCC-TCCTCAGAAGATATCTTGGCCATGCTGCGAC gaaatgcatatttagttctacacacgcttttgaggtgccttaaccctcagCTTCAGGATATAGTGCTGGCTTGTCCTCTGCTTCCcTCATCAGAGGATATCTTGGCCATGCTGCGACgtgagcaccttccaacaggcaggattaggttcttttacctaccacctatc Alignment from Spaln_nt2Genome CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCC-TCCTCAGAAGATATCTTGGCCATGCTGCGAC gaaatgcatatttagttctacacacgcttttgaggtgccttaaccctcagCTTCAGGATATAGTGCTGGCTTGTCCTCTGCTTCCCTCATCAGAGGATATCTTGGCCATGCTGCGACgtgagcaccttccaacaggcaggattaggttcttttacctaccacctatc Alignment from Pairagon CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCT-CCTCCTCAGAAGATATCTTGGCCATGCTGCGAC gaaatgcatatttagttctacacacgcttttgaggtgccttaaccctcagCTTCAGGATATAGTGCTGGCTTGTCCTCTGCTTCCCTCATCAGAGGATATCTTGGCCATGCTGCGACgtgagcaccttccaacaggcaggattaggttcttttacctaccacctatc Alignment from Exonerate_protein2genome CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCC-TCCTCAGAAGATATCTTGGCCATGCTGCGAC gaaatgcatatttagttctacacacgcttttgaggtgccttaaccctcagCTTCAGGATATAGTGCTGGCTTGTCCTCTGCTTCCCTCATCAGAGGATATCTTGGCCATGCTGCGACgtgagcaccttccaacaggcaggattaggttcttttacctaccacctatc Alignment from Exonerate_coding2genome CATCAGGCTACGGTGCTGGCTTGTCCTCTGCCTCC-TCCTCAGAAGATATCTTGGCCATGCTGCGAC gaaatgcatatttagttctacacacgcttttgaggtgccttaaccctcagCTTCAGGATATAGTGCTGGCTTGTCCTCTGCTTCCCTCATCAGAGGATATCTTGGCCATGCTGCGACgtgagcaccttccaacaggcaggattaggttcttttacctaccacctatc Alignment from GeneWise gaaatgcatatttagttctacacacgcttttgaggtgccttaaccctcagcttcaggatatagtgctggcttgtcctctgcttccctcatcagaggatatcttggccatgctgcgacgtgagcaccttccaacaggcaggattaggttcttttacctaccacctatc #### Col17a1_ID10279_43 --> 2 - 1 Original Alignment gtGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTAC-TCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGt cagctctttctggctgcaggcgtgatcaactgcttcggttgttgtttcaggtGGTAACATCAGGACATATCTCCTAGGAGTTCAGGGGCCCCCTGGACCCCCAGGACCCCCTGGATCTGTCATCACCATCAAGGGAGAGACTTTTGATTACCTCCCAACTGGCAAGTCACGAAGTTAGCTACCTACGAtgtgagtccataaaaatttccgtgtttttcccctctacctttgcagatcat Alignment from CESAR gtGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTAC-TCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGt cagctctttctggctgcaggcgtgatcaactgcttcggttgttgtttcaggtGGTAACATCAGGACATATCTCCTAGGAGTTCAGGGGCCCCCTGGACCCCCAGGACCCCCTGGATCTGTCATCACCATCAAGGGAGAGACTTTTGATTACCTCCCAACTGGCAAGTCACGAAGTTAGCTACCTACGAtgtgagtccataaaaatttccgtgtttttcccctctacctttgcagatcat Alignment from Spaln_aa2Genome GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTAC-TCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT cagctctttctggctgcaggcgtgatcaactgcttcggttgttgtttcagGTGGTAACATCAGGACATATCTCCTAGGAGTTCAGGGGCCCCCTGGACCCCCAGGACCCCCTGGATCTGTCATCACCATCAAGGGAGAGACTTTTGATTACcTCCCAACTGGCAAGTCACGAAGTTAGCTACCTACGATgtgagtccataaaaatttccgtgtttttcccctctacctttgcagatcat Alignment from Spaln_nt2Genome GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTAC-TCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT cagctctttctggctgcaggcgtgatcaactgcttcggttgttgtttcagGTGGTAACATCAGGACATATCTCCTAGGAGTTCAGGGGCCCCCTGGACCCCCAGGACCCCCTGGATCTGTCATCACCATCAAGGGAGAGACTTTTGATTACCTCCCAACTGGCAAGTCACGAAGTTAGCTACCTACGATgtgagtccataaaaatttccgtgtttttcccctctacctttgcagatcat Alignment from Pairagon GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTA-CTCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT cagctctttctggctgcaggcgtgatcaactgcttcggttgttgtttcagGTGGTAACATCAGGACATATCTCCTAGGAGTTCAGGGGCCCCCTGGACCCCCAGGACCCCCTGGATCTGTCATCACCATCAAGGGAGAGACTTTTGATTACCTCCCAACTGGCAAGTCACGAAGTTAGCTACCTACGATgtgagtccataaaaatttccgtgtttttcccctctacctttgcagatcat Alignment from Exonerate_protein2genome GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTAC-TCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT cagctctttctggctgcaggcgtgatcaactgcttcggttgttgtttcagGTGGTAACATCAGGACATATCTCCTAGGAGTTCAGGGGCCCCCTGGACCCCCAGGACCCCCTGGATCTGTCATCACCATCAAGGGAGAGACTTTTGATTACCTCCCAACTGGCAAGTCACGAAGTTAGCTACCTACGATgtgagtccataaaaatttccgtgtttttcccctctacctttgcagatcat Alignment from Exonerate_coding2genome GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTAC-TCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT cagctctttctggctgcaggcgtgatcaactgcttcggttgttgtttcagGTGGTAACATCAGGACATATCTCCTAGGAGTTCAGGGGCCCCCTGGACCCCCAGGACCCCCTGGATCTGTCATCACCATCAAGGGAGAGACTTTTGATTACCTCCCAACTGGCAAGTCACGAAGTTAGCTACCTACGATgtgagtccataaaaatttccgtgtttttcccctctacctttgcagatcat Alignment from GeneWise GTGACAACATCAGGACTTATCTCTCAGGGGTTCAGGGTCCCCCAGGCCCACCAGGTCCCCCAGGGCCTGTCATCACCATCACAGGAGAGACTTTCGACTAC-TCCCAGCTGGCAAGCCAGGTCGTAAGCTACTTGCGGT cagctctttctggctgcaggcgtgatcaactgcttcggttgttgtttcagGTGGTAACATCAGGACATATCTCCTAGGAGTTCAGGGGCCCCCTGGACCCCCAGGACCCCCTGGATCTGTCATCACCATCAAGGGAGAGACTTTTGATTACCTCCCAACTGGCAAGTCACGAAGTTAGCTACCTACGATgtgagtccataaaaatttccgtgtttttcccctctacctttgcagatcat #### Col17a1_ID10280_42 --> 2 - 1 Original Alignment ggGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGG-CCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAa taccctacttttggtgacatactgagtctgtatatttttctttttgaaagggGCATCATCAAGCACTCTGTACATGCAGGGGCCCCCTGGCCCTCCAGGGCCCCCTGGGCCCTCCAGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCAGAATACATGCAAagtaatagctttgacatttcacacatcaccatggacatcagttgaaacagg Alignment from CESAR ggGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGG-CCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAa taccctacttttggtgacatactgagtctgtatatttttctttttgaaagggGCATCATCAAGCACTCTGTACATGCAGGGGCCCCCTGGCCCTCCAGGGCCCCCTGGGCCCTCCAGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCAGAATACATGCAAagtaatagctttgacatttcacacatcaccatggacatcagttgaaacagg Alignment from Spaln_aa2Genome GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCT-GGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA taccctacttttggtgacatactgagtctgtatatttttctttttgaaagGGGCATCATCAAGCACTCTGTACATGCAGGGGCCCCCTGGCCCTCCAGGGCCCCCTgGGCCCTCCAGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCAGAATACATGCAAAgtaatagctttgacatttcacacatcaccatggacatcagttgaaacagg Alignment from Spaln_nt2Genome GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCT-GGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA taccctacttttggtgacatactgagtctgtatatttttctttttgaaagGGGCATCATCAAGCACTCTGTACATGCAGGGGCCCCCTGGCCCTCCAGGGCCCCCTGGGCCCTCCAGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCAGAATACATGCAAAgtaatagctttgacatttcacacatcaccatggacatcagttgaaacagg Alignment from Pairagon GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCTGGG-CCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA taccctacttttggtgacatactgagtctgtatatttttctttttgaaagGGGCATCATCAAGCACTCTGTACATGCAGGGGCCCCCTGGCCCTCCAGGGCCCCCTGGGCCCTCCAGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCAGAATACATGCAAAgtaatagctttgacatttcacacatcaccatggacatcagttgaaacagg Alignment from Exonerate_protein2genome GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCT-GGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA taccctacttttggtgacatactgagtctgtatatttttctttttgaaagGGGCATCATCAAGCACTCTGTACATGCAGGGGCCCCCTGGCCCTCCAGGGCCCCCTGGGCCCTCCAGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCAGAATACATGCAAAgtaatagctttgacatttcacacatcaccatggacatcagttgaaacagg Alignment from Exonerate_coding2genome GGGCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCT-GGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA taccctacttttggtgacatactgagtctgtatatttttctttttgaaagGGGCATCATCAAGCACTCTGTACATGCAGGGGCCCCCTGGCCCTCCAGGGCCCCCTGGGCCCTCCAGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCAGAATACATGCAAAgtaatagctttgacatttcacacatcaccatggacatcagttgaaacagg Alignment from GeneWise --GCGTCATCAAGCACTCTGTACATGCAGGGCCCCCCTGGCCCTCCAGGGCCCCCT-GGGCCTCCGGGCTCCCTCAGCAGCTCCGGCCAGGATATCCAGCACTACATCGCTGAATACATGCAAA taccctacttttggtgacatactgagtctgtatatttttctttttgaaagGGGCATCATCAAGCACTCTGTACATGCAGGGGCCCCCTGGCCCTCCAGGGCCCCCTGGGCCCTCCAGGCTCCCTCAGCAGCTCTGGCCAGGATATACAGCACTACATTGCAGAATACATGCAAAgtaatagctttgacatttcacacatcaccatggacatcagttgaaacagg #### Col17a1_ID10281_41 --> 2 - 1 Original Alignment gtGATCCTGGTGTCCCAGGTACT-CCTGGCATCTCTGGTGGTCTTTCTCATg aaaggctgctgcactcaacctggatggaggtcctctggtttgtgttttaggtGATCCTGGTGTTCCAGGTACCCCCTGGTATTTCTGGTGGTCTTTCTCATggtaaatcttgaagataattgatagcaagtacatggggcagtatattgttc Alignment from CESAR gtGATCCTGGTGTCCCAGGTACT-CCTGGCATCTCTGGTGGTCTTTCTCATg aaaggctgctgcactcaacctggatggaggtcctctggtttgtgttttaggtGATCCTGGTGTTCCAGGTACCCCCTGGTATTTCTGGTGGTCTTTCTCATggtaaatcttgaagataattgatagcaagtacatggggcagtatattgttc Alignment from Spaln_aa2Genome GTGATCCTGGTGTCCCAGGTACTCCT-GGCATCTCTGGTGGTCTTTCTCATG aaaggctgctgcactcaacctggatggaggtcctctggtttgtgttttagGTGATCCTGGTGTTCCAGGTACCCCCtGGTATTTCTGGTGGTCTTTCTCATGgtaaatcttgaagataattgatagcaagtacatggggcagtatattgttc Alignment from Spaln_nt2Genome GTGATCCTGGTGTCCCAGGTACTCC-TGGCATCTCTGGTGGTCTTTCTCATG aaaggctgctgcactcaacctggatggaggtcctctggtttgtgttttagGTGATCCTGGTGTTCCAGGTACCCCCTGGTATTTCTGGTGGTCTTTCTCATGgtaaatcttgaagataattgatagcaagtacatggggcagtatattgttc Alignment from Pairagon GTGATCCTGGTGTCCCAGGTA-CTCCTGGCATCTCTGGTGGTCTTTCTCATG aaaggctgctgcactcaacctggatggaggtcctctggtttgtgttttagGTGATCCTGGTGTTCCAGGTACCCCCTGGTATTTCTGGTGGTCTTTCTCATGgtaaatcttgaagataattgatagcaagtacatggggcagtatattgttc Alignment from Exonerate_protein2genome GTGATCCTGGTGTCCCAGGTACT-CCTGGCATCTCTGGTGGTCTTTCTCATG aaaggctgctgcactcaacctggatggaggtcctctggtttgtgttttagGTGATCCTGGTGTTCCAGGTACCCCCTGGTATTTCTGGTGGTCTTTCTCATGgtaaatcttgaagataattgatagcaagtacatggggcagtatattgttc Alignment from Exonerate_coding2genome GTGATCCTGGTGTCCCAGGTACT-CCTGGCATCTCTGGTGGTCTTTCTCATG aaaggctgctgcactcaacctggatggaggtcctctggtttgtgttttagGTGATCCTGGTGTTCCAGGTACCCCCTGGTATTTCTGGTGGTCTTTCTCATGgtaaatcttgaagataattgatagcaagtacatggggcagtatattgttc Alignment from GeneWise aaaggctgctgcactcaacctggatggaggtcctctggtttgtgttttaggtgatcctggtgttccaggtaccccctggtatttctggtggtctttctcatggtaaatcttgaagataattgatagcaagtacatggggcagtatattgttc #### Col17a1_ID10282_40 --> 2 - 1 Original Alignment aaACCTTCTTCACTGGCCCTCCAGGT-CCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAg gaatgggaaacgtcccatcatttgcatctaatatttttgtgtgttgttagtaACATTCTTTAGGGGACCTCCAGGTCCCACCTGGCCCCCCAGGTCCAAAGGGGGACCAAggtgagtgcagtaacctgaaacatctcaatcaagtgtgaagtttcactgct Alignment from CESAR aaACCTTCTTCACTGGCCCTCCAGGT-CCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAg gaatgggaaacgtcccatcatttgcatctaatatttttgtgtgttgttagtaACATTCTTTAGGGGACCTCCAGGTCCCACCTGGCCCCCCAGGTCCAAAGGGGGACCAAggtgagtgcagtaacctgaaacatctcaatcaagtgtgaagtttcactgct Alignment from Spaln_aa2Genome AAACCTTCTTCACTGGCCCTCCAGGT-CCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAG gaatgggaaacgtcccatcatttgcatctaatatttttgtgtgttgttagTAACATTCTTTAGGGGACCTCCAGGTcCCACCTGGCCCCCCAGGTCCAAAGGGGGACCAAGgtgagtgcagtaacctgaaacatctcaatcaagtgtgaagtttcactgct Alignment from Spaln_nt2Genome AAACCTTCTTCACTGGCCCTCCAGGTCC-ACCCGGCCCCCCAGGTCCCAAGGGAGACCAAG gaatgggaaacgtcccatcatttgcatctaatatttttgtgtgttgttagTAACATTCTTTAGGGGACCTCCAGGTCCCACCTGGCCCCCCAGGTCCAAAGGGGGACCAAGgtgagtgcagtaacctgaaacatctcaatcaagtgtgaagtttcactgct Alignment from Pairagon AAACCTTCTTCACTGGCCCTCCAGGT-CCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAG gaatgggaaacgtcccatcatttgcatctaatatttttgtgtgttgttagTAACATTCTTTAGGGGACCTCCAGGTCCCACCTGGCCCCCCAGGTCCAAAGGGGGACCAAGgtgagtgcagtaacctgaaacatctcaatcaagtgtgaagtttcactgct Alignment from Exonerate_protein2genome AAACCTTCTTCACTGGCCCTCCAGGT-CCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAG gaatgggaaacgtcccatcatttgcatctaatatttttgtgtgttgttagTAACATTCTTTAGGGGACCTCCAGGTCCCACCTGGCCCCCCAGGTCCAAAGGGGGACCAAGgtgagtgcagtaacctgaaacatctcaatcaagtgtgaagtttcactgct Alignment from Exonerate_coding2genome AAACCTTCTTCACTGGCCCTCCAGGT-CCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAG gaatgggaaacgtcccatcatttgcatctaatatttttgtgtgttgttagTAACATTCTTTAGGGGACCTCCAGGTCCCACCTGGCCCCCCAGGTCCAAAGGGGGACCAAGgtgagtgcagtaacctgaaacatctcaatcaagtgtgaagtttcactgct Alignment from GeneWise AAACCTTCTTCACTGGCCCTCCA-GGTCCACCCGGCCCCCCAGGTCCCAAGGGAGACCAAG gaatgggaaacgtcccatcatttgcatctaatatttttgtgtgttgttagTAACATTCTTTAGGGGACCTCCAGGTCCCACCTGGCCCCCCAGGTCCAAAGGGGGACCAAGgtgagtgcagtaacctgaaacatctcaatcaagtgtgaagtttcactgct #### Col17a1_ID10285_37 --> 2 - 1 Original Alignment aaGGTGTTGACTTACGAGGTCCCCCTGGC-CCACCTGGCCCACGAGGGCCACCAg gtcaggcttcagtcttctttttcatttaatcctagactctctctcaccagaaGGGGTTGGCTTACATGGCCCCCCTGGCCCCCTCTGGACCACGAGGGCCACCGggcaagtcctcaccaaaattttaagggggggagaatcacataaccttccac Alignment from CESAR aaGGTGTTGACTTACGAGGTCCCCCTGGCCCA-CCTGGCCCACGAGGGCCACCAg gtcaggcttcagtcttctttttcatttaatcctagactctctctcaccagaaGGGGTTGGCTTACATGGCCCCCCTGGCCCCCTCTGGACCACGAGGGCCACCGggcaagtcctcaccaaaattttaagggggggagaatcacaatttctacctt Alignment from Spaln_aa2Genome AAGGTGTTGACTTACGAGGTCCCCCTGGC-CCACCTGGCCCACGAGGGCCACCAG gtcaggcttcagtcttctttttcatttaatcctagactctctctcaccagAAGGGGTTGGCTTACATGGCCCCCCTGGCcCCCTCTGGACCACGAGGGCCACCGGgcaagtcctcaccaaaattttaagggggggagaatcacataaccttccac Alignment from Spaln_nt2Genome AAGGTGTTGACTTACGAGGTCCCCCTGGCCCAC-CTGGCCCACGAGGGCCACCAG gtcaggcttcagtcttctttttcatttaatcctagactctctctcaccagAAGGGGTTGGCTTACATGGCCCCCCTGGCCCCCTCTGGACCACGAGGGCCACCGGgcaagtcctcaccaaaattttaagggggggagaatcacataaccttccac Alignment from Pairagon AAGGTGTTGACTTACGAGGTCCCCCTGGCCCAC-CTGGCCCACGAGGGCCACCAG gtcaggcttcagtcttctttttcatttaatcctagactctctctcaccagAAGGGGTTGGCTTACATGGCCCCCCTGGCCCCCTCTGGACCACGAGGGCCACCGGgcaagtcctcaccaaaattttaagggggggagaatcacataaccttccac Alignment from Exonerate_protein2genome AAGGTGTTGACTTACGAGGTCCCCCTGGC-CCACCTGGCCCACGAGGGCCACCAG gtcaggcttcagtcttctttttcatttaatcctagactctctctcaccagAAGGGGTTGGCTTACATGGCCCCCCTGGCCCCCTCTGGACCACGAGGGCCACCGGgcaagtcctcaccaaaattttaagggggggagaatcacataaccttccac Alignment from Exonerate_coding2genome AAGGTGTTGACTTACGAGGTCCCCCTGGC-CCACCTGGCCCACGAGGGCCACCAG gtcaggcttcagtcttctttttcatttaatcctagactctctctcaccagAAGGGGTTGGCTTACATGGCCCCCCTGGCCCCCTCTGGACCACGAGGGCCACCGGgcaagtcctcaccaaaattttaagggggggagaatcacataaccttccac Alignment from GeneWise gtcaggcttcagtcttctttttcatttaatcctagactctctctcaccagaaggggttggcttacatggcccccctggccccctctggaccacgagggccaccgggcaagtcctcaccaaaattttaagggggggagaatcacataaccttccac #### Col17a1_ID10308_14 --> 2 - 1 Original Alignment ctTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAG-CAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATg agacaggtataaaaacagtacacttaagttattttgttcttgtattttagctTCCTTCTCAGAAGAGACACTGAAAAAGGAGAAGCCAGGCTGCGTATGCTGCTGACACCTGTCTCAAGGCAGATGTGAATggtgagcgaaatagcagccactgagtgcacaaacctgcaccttatttttct Alignment from CESAR ctTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAG-CAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATg agacaggtataaaaacagtacacttaagttattttgttcttgtattttagctTCCTTCTCAGAAGAGACACTGAAAAAGGAGAAGCCAGGCTGCGTATGCTGCTGACACCTGTCTCAAGGCAGATGTGAATggtgagcgaaatagcagccactgagtgcacaaacctgcaccttatttttct Alignment from Spaln_aa2Genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAG-CAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agacaggtataaaaacagtacacttaagttattttgttcttgtattttagCTTCCTTCTCAGAAGAGACACTGAAAAAGGAGAAGcCAGGCTGCGTATGCTGCTGACACCTGTCTCAAGGCAGATGTGAATGgtgagcgaaatagcagccactgagtgcacaaacctgcaccttatttttct Alignment from Spaln_nt2Genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAG-CAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agacaggtataaaaacagtacacttaagttattttgttcttgtattttagCTTCCTTCTCAGAAGAGACACTGAAAAAGGAGAAGCCAGGCTGCGTATGCTGCTGACACCTGTCTCAAGGCAGATGTGAATGgtgagcgaaatagcagccactgagtgcacaaacctgcaccttatttttct Alignment from Pairagon CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAG-CAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agacaggtataaaaacagtacacttaagttattttgttcttgtattttagCTTCCTTCTCAGAAGAGACACTGAAAAAGGAGAAGCCAGGCTGCGTATGCTGCTGACACCTGTCTCAAGGCAGATGTGAATGgtgagcgaaatagcagccactgagtgcacaaacctgcaccttatttttct Alignment from Exonerate_protein2genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAG-CAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agacaggtataaaaacagtacacttaagttattttgttcttgtattttagCTTCCTTCTCAGAAGAGACACTGAAAAAGGAGAAGCCAGGCTGCGTATGCTGCTGACACCTGTCTCAAGGCAGATGTGAATGgtgagcgaaatagcagccactgagtgcacaaacctgcaccttatttttct Alignment from Exonerate_coding2genome CTTCCTTTTCAGAAGACACCCTGAAAAAGGAGAAG-CAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agacaggtataaaaacagtacacttaagttattttgttcttgtattttagCTTCCTTCTCAGAAGAGACACTGAAAAAGGAGAAGCCAGGCTGCGTATGCTGCTGACACCTGTCTCAAGGCAGATGTGAATGgtgagcgaaatagcagccactgagtgcacaaacctgcaccttatttttct Alignment from GeneWise CTTCCTTTTCAGAAGACACCCTGAAAAAGGAG-AAGCAGGCTGCATATGCCGCTGACACCTGCCTGAAGGCAGATGTGAATG agacaggtataaaaacagtacacttaagttattttgttcttgtattttagCTTCCTTCTCAGAAGAGACACTGAAAAAGGAGAAGCCAGGCTGCGTATGCTGCTGACACCTGTCTCAAGGCAGATGTGAATGgtgagcgaaatagcagccactgagtgcacaaacctgcaccttatttttct #### Coro1b_ID352_2 --> 0 - 0 Original Alignment ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGT-GGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG tagagaggaaaattagaaggtcatctttatctgtcctattcactatctagACTGGCCATGTTGACAAGGCATTCCCAACAGTATGTCGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGCGGAGCAGAAGATTGCACTGTCATGgtgagtaaaaatctgttcaggttagctgagcccaagatgcgcttaagggg Alignment from CESAR ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGT-GGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG tagagaggaaaattagaaggtcatctttatctgtcctattcactatctagACTGGCCATGTTGACAAGGCATTCCCAACAGTATGTCGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGCGGAGCAGAAGATTGCACTGTCATGgtgagtaaaaatctgttcaggttagctgagcccaagatgcgcttaagggg Alignment from Spaln_aa2Genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGT-GGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG tagagaggaaaattagaaggtcatctttatctgtcctattcactatctagACTGGCCATGTTGACAAGGCATTCCCAACAGTATGTcGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGCGGAGCAGAAGATTGCACTGTCATGgtgagtaaaaatctgttcaggttagctgagcccaagatgcgcttaagggg Alignment from Spaln_nt2Genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGT-GGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG tagagaggaaaattagaaggtcatctttatctgtcctattcactatctagACTGGCCATGTTGACAAGGCATTCCCAACAGTATGTCGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGCGGAGCAGAAGATTGCACTGTCATGgtgagtaaaaatctgttcaggttagctgagcccaagatgcgcttaagggg Alignment from Pairagon ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGT-GGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG tagagaggaaaattagaaggtcatctttatctgtcctattcactatctagACTGGCCATGTTGACAAGGCATTCCCAACAGTATGTCGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGCGGAGCAGAAGATTGCACTGTCATGgtgagtaaaaatctgttcaggttagctgagcccaagatgcgcttaagggg Alignment from Exonerate_protein2genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGT-GGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG tagagaggaaaattagaaggtcatctttatctgtcctattcactatctagACTGGCCATGTTGACAAGGCATTCCCAACAGTATGTCGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGCGGAGCAGAAGATTGCACTGTCATGgtgagtaaaaatctgttcaggttagctgagcccaagatgcgcttaagggg Alignment from Exonerate_coding2genome ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGT-GGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG tagagaggaaaattagaaggtcatctttatctgtcctattcactatctagACTGGCCATGTTGACAAGGCATTCCCAACAGTATGTCGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGCGGAGCAGAAGATTGCACTGTCATGgtgagtaaaaatctgttcaggttagctgagcccaagatgcgcttaagggg Alignment from GeneWise ACGGGCCGCATTGACAAGGCCTACCCGACAGTGTGT-GGGCACACGGGGCCTGTTCTGGATATTGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGTGGATCAGAGGACTGCACTGTCATG tagagaggaaaattagaaggtcatctttatctgtcctattcactatctagACTGGCCATGTTGACAAGGCATTCCCAACAGTATGTCGGGCACACAGGGCCTGTTCTGGATATAGACTGGTGTCCCCACAATGATGAAGTCATTGCCAGCGGAGCAGAAGATTGCACTGTCATGgtgagtaaaaatctgttcaggttagctgagcccaagatgcgcttaagggg #### Coro1b_ID353_3 --> 0 - 1 Original Alignment GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC------AAGCGCGTGGGCATTATC-ACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAg caacctccttcctgatgatggacctgtccctcacttctcccattccccagGTTTGGCAGATCCCAGAAAATGGGTTGACT---CCACTGACGGAGCCCGTAGTTGTGCCTGAGGGGCATACAATTAAACGACGTGTGGGTATTACTCACTTGGCACCCTACAGCCCAGATCGTGCTTCTTGGTGCTggtgagcactatacctaaaccatgctctctacccttctccgaattgtagtc Alignment from CESAR GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC------AAGCGCGTGGGCATT-ATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAg caacctccttcctgatgatggacctgtccctcacttctcccattccccagGTTTGGCAGATCCCAGAAAATGGGTTGACT---CCACTGACGGAGCCCGTAGTTGTGCCTGAGGGGCATACAATTAAACGACGTGTGGGTATTACTCACTTGGCACCCTACAGCCCAGATCGTGCTTCTTGGTGCTggtgagcactatacctaaaccatgctctctacccttctccgaattgtagtc Alignment from Spaln_aa2Genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC------AAGCGCGTGGGCATT-ATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG caacctccttcctgatgatggacctgtccctcacttctcccattccccagGTTTGGCAGATCCCAGAAAATGGGTTG---ACTCCACTGACGGAGCCCGTAGTTGTGCCTGAGGGGCATACAATTAAACGACGTGTGGGTATTaCTCACTTGGCACCCTACAGCCCAGATCGTGCTTCTTGGTGCTGgtgagcactatacctaaaccatgctctctacccttctccgaattgtagtc Alignment from Spaln_nt2Genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACCAAG------CGCGTGGGCATTA-TCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG caacctccttcctgatgatggacctgtccctcacttctcccattccccagGTTTGGCAGATCCCAGAAAATGGGTTGA---CTCCACTGACGGAGCCCGTAGTTGTGCCTGAGGGGCATACAATTAAACGACGTGTGGGTATTACTCACTTGGCACCCTACAGCCCAGATCGTGCTTCTTGGTGCTGgtgagcactatacctaaaccatgctctctacccttctccgaattgtagtc Alignment from Pairagon GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACCA------AGCGCGTGGGCATTA-TCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG caacctccttcctgatgatggacctgtccctcacttctcccattccccagGTTTGGCAGATCCCAGAAAATGGGTTGA---CTCCACTGACGGAGCCCGTAGTTGTGCCTGAGGGGCATACAATTAAACGACGTGTGGGTATTACTCACTTGGCACCCTACAGCCCAGATCGTGCTTCTTGGTGCTGgtgagcactatacctaaaccatgctctctacccttctccgaattgtagtc Alignment from Exonerate_protein2genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC------AAGCGCGTGGGCATT-ATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG caacctccttcctgatgatggacctgtccctcacttctcccattccccagGTTTGGCAGATCCCAGAAAATGGGTTGACT---CCACTGACGGAGCCCGTAGTTGTGCCTGAGGGGCATACAATTAAACGACGTGTGGGTATTACTCACTTGGCACCCTACAGCCCAGATCGTGCTTCTTGGTGCTGgtgagcactatacctaaaccatgctctctacccttctccgaattgtagtc Alignment from Exonerate_coding2genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC------AAGCGCGTGGGCATT-ATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG caacctccttcctgatgatggacctgtccctcacttctcccattccccagGTTTGGCAGATCCCAGAAAATGGGTTGACT---CCACTGACGGAGCCCGTAGTTGTGCCTGAGGGGCATACAATTAAACGACGTGTGGGTATTACTCACTTGGCACCCTACAGCCCAGATCGTGCTTCTTGGTGCTGgtgagcactatacctaaaccatgctctctacccttctccgaattgtagtc Alignment from GeneWise GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC------AAGCGCGTGGGCATT-ATCACCTGGCACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG caacctccttcctgatgatggacctgtccctcacttctcccattccccagGTTTGGCAGATCCCAGAAAATGGGTTGACT---CCACTGACGGAGCCCGTAGTTGTGCCTGAGGGGCATACAATTAAACGACGTGTGGGTATTACTCACTTGGCACCCTACAGCCCAGATCGTGCTTCTTGGTGCTGgtgagcactatacctaaaccatgctctctacccttctccgaattgtagtc #### Csf2ra_ID13430_10 --> 1 - 0 Original Alignment gTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATC-AGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG gtcggacacccaggtgcatgctactctgatctaaatttattttatttcaggTTGGAGGTGACACGCCGACTCTTCCCACCCATCCCAGGGATTCAGGGACAAGGTGTCTGACGATGTGCGAGTGAACCCTGAGgtgagtagtcataggcactagcagtgggagttgagtgtgacactgggctc Alignment from CESAR gTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATC-AGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG gtcggacacccaggtgcatgctactctgatctaaatttattttatttcaggTTGGAGGTGACACGCCGACTCTTCCCACCCATCCCAGGGATTCAGGGACAAGGTGTCTGACGATGTGCGAGTGAACCCTGAGgtgagtagtcataggcactagcagtgggagttgagtgtgacactgggctc Alignment from Spaln_aa2Genome GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATC-AGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG gtcggacacccaggtgcatgctactctgatctaaatttattttatttcagGTTGGAGGTGACACGCCGACTCTTCCCACCCATCCCAGGGATTcAGGGACAAGGTGTCTGACGATGTGCGAGTGAACCCTGAGgtgagtagtcataggcactagcagtgggagttgagtgtgacactgggctc Alignment from Spaln_nt2Genome GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCA-GGGATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG gtcggacacccaggtgcatgctactctgatctaaatttattttatttcagGTTGGAGGTGACACGCCGACTCTTCCCACCCATCCCAGGGATTCAGGGACAAGGTGTCTGACGATGTGCGAGTGAACCCTGAGgtgagtagtcataggcactagcagtgggagttgagtgtgacactgggctc Alignment from Pairagon GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGA-TCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG gtcggacacccaggtgcatgctactctgatctaaatttattttatttcagGTTGGAGGTGACACGCCGACTCTTCCCACCCATCCCAGGGATTCAGGGACAAGGTGTCTGACGATGTGCGAGTGAACCCTGAGgtgagtagtcataggcactagcagtgggagttgagtgtgacactgggctc Alignment from Exonerate_protein2genome GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATC-AGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG gtcggacacccaggtgcatgctactctgatctaaatttattttatttcagGTTGGAGGTGACACGCCGACTCTTCCCACCCATCCCAGGGATTCAGGGACAAGGTGTCTGACGATGTGCGAGTGAACCCTGAGgtgagtagtcataggcactagcagtgggagttgagtgtgacactgggctc Alignment from Exonerate_coding2genome GTTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGGATC-AGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG gtcggacacccaggtgcatgctactctgatctaaatttattttatttcagGTTGGAGGTGACACGCCGACTCTTCCCACCCATCCCAGGGATTCAGGGACAAGGTGTCTGACGATGTGCGAGTGAACCCTGAGgtgagtagtcataggcactagcagtgggagttgagtgtgacactgggctc Alignment from GeneWise -TTCGAGGTGACGCGCCGACTCTTCCCGCCCATCCCAGGG-ATCAGGGACAAGGTGTCCGACGACGTGCGAGTGAACCCTGAG gtcggacacccaggtgcatgctactctgatctaaatttattttatttcagGTTGGAGGTGACACGCCGACTCTTCCCACCCATCCCAGGGATTCAGGGACAAGGTGTCTGACGATGTGCGAGTGAACCCTGAGgtgagtagtcataggcactagcagtgggagttgagtgtgacactgggctc #### Csf2ra_ID13431_9 --> 2 - 2 Original Alignment agGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCA-GTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGag acatgaacagattacttctagattgccatgttctgtccactccaccccagatGCAGAGGACACACGGGTGCCTGGTGCACTCCTCTACACAGTAACTGCCTGTGCGCGTCCTGCTGTGTGCACTGGTGCTCGGAGTGACTTGTAGGaggtgagacaaaggggcattatcatgaacaaggcgtgtgagcagtcggacac Alignment from CESAR agGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCA-GTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGag acatgaacagattacttctagattgccatgttctgtccactccaccccagatGCAGAGGACACACGGGTGCCTGGTGCACTCCTCTACACAGTAACTGCCTGTGCGCGTCCTGCTGTGTGCACTGGTGCTCGGAGTGACTTGTAGGaggtgagacaaaggggcattatcatgaacaaggcgtgtgagcagtcggacac Alignment from Spaln_aa2Genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCA-GTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagattacttctagattgccatgttctgtccactccaccccagATGCAGAGGACACACGGGTGCCTGGTGCACTCCTCTACACAGTAACTGCCTGTGCGcGTCCTGCTGTGTGCACTGGTGCTCGGAGTGACTTGTAGGAGgtgagacaaaggggcattatcatgaacaaggcgtgtgagcagtcggacac Alignment from Spaln_nt2Genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCA-GTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagattacttctagattgccatgttctgtccactccaccccagATGCAGAGGACACACGGGTGCCTGGTGCACTCCTCTACACAGTAACTGCCTGTGCGCGTCCTGCTGTGTGCACTGGTGCTCGGAGTGACTTGTAGGAGgtgagacaaaggggcattatcatgaacaaggcgtgtgagcagtcggacac Alignment from Pairagon AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCA-GTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagattacttctagattgccatgttctgtccactccaccccagATGCAGAGGACACACGGGTGCCTGGTGCACTCCTCTACACAGTAACTGCCTGTGCGCGTCCTGCTGTGTGCACTGGTGCTCGGAGTGACTTGTAGGAGgtgagacaaaggggcattatcatgaacaaggcgtgtgagcagtcggacac Alignment from Exonerate_protein2genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCA-GTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagattacttctagattgccatgttctgtccactccaccccagATGCAGAGGACACACGGGTGCCTGGTGCACTCCTCTACACAGTAACTGCCTGTGCGCGTCCTGCTGTGTGCACTGGTGCTCGGAGTGACTTGTAGGAGgtgagacaaaggggcattatcatgaacaaggcgtgtgagcagtcggacac Alignment from Exonerate_coding2genome acatgaacagattacttctagattgccatgttctgtccactccaccccagatgcagaggacacacgggtgcctggtgcactcctctacacagtaactgcctgtgcgcgtcctgctgtgtgcactggtgctcggagtgacttgtaggaggtgagacaaaggggcattatcatgaacaaggcgtgtgagcagtcggacac Alignment from GeneWise AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGC-GCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acatgaacagattacttctagattgccatgttctgtccactccaccccagATGCAGAGGACACACGGGTGCCTGGTGCACTCCTCTACACAGTAACTGCCTGTGCGCGTCCTGCTGTGTGCACTGGTGCTCGGAGTGACTTGTAGGAGgtgagacaaaggggcattatcatgaacaaggcgtgtgagcagtcggacac #### Csf2ra_ID13433_7 --> 0 - 0 Original Alignment AGCGCAGAGCCA-GGAAGCACACCCCGGAAG tatgccaatagctgacaaaattcacagcagagtgacctccttttctctagAGCGCAGAACCACGGAAGCACACCCCGGCAGgtcagctggctagatgtagcatatggcctggattctattatggtagtaca Alignment from CESAR AGCGCAGAGCCA-GGAAGCACACCCCGGAAG tatgccaatagctgacaaaattcacagcagagtgacctccttttctctagAGCGCAGAACCACGGAAGCACACCCCGGCAGgtcagctggctagatgtagcatatggcctggattctattatggtagtaca Alignment from Spaln_aa2Genome CAGAG---CCAGGAAGCACACCCCGGAAG tatgccaatagctgacaaaattcacagcagagtgacctccttttctctagagCGCAGAACCACGGAAGCACACCCCGGCAGgtcagctggctagatgtagcatatggcctggattctattatggtagtaca Alignment from Spaln_nt2Genome AGCGCAGAGCCA-GGAAGCACACCCCGGAAG tatgccaatagctgacaaaattcacagcagagtgacctccttttctctagAGCGCAGAACCACGGAAGCACACCCCGGCAGgtcagctggctagatgtagcatatggcctggattctattatggtagtaca Alignment from Pairagon AGCGCAGAGCCA-GGAAGCACACCCCGGAAG tatgccaatagctgacaaaattcacagcagagtgacctccttttctctagAGCGCAGAACCACGGAAGCACACCCCGGCAGgtcagctggctagatgtagcatatggcctggattctattatggtagtaca Alignment from Exonerate_protein2genome AGCGCAGAGCCA-GGAAGCACACCCCGGAAG tatgccaatagctgacaaaattcacagcagagtgacctccttttctctagAGCGCAGAACCACGGAAGCACACCCCGGCAGgtcagctggctagatgtagcatatggcctggattctattatggtagtaca Alignment from Exonerate_coding2genome tatgccaatagctgacaaaattcacagcagagtgacctccttttctctagagcgcagaaccacggaagcacaccccggcaggtcagctggctagatgtagcatatggcctggattctattatggtagtaca Alignment from GeneWise tatgccaatagctgacaaaattcacagcagagtgacctccttttctctagagcgcagaaccacggaagcacaccccggcaggtcagctggctagatgtagcatatggcctggattctattatggtagtaca #### Csf2ra_ID13434_6 --> 2 - 0 Original Alignment agCGACTCGGTCCCCCACGTGACGTCACC-GCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aatgtagagcttgcacatgtttcctcttttttgtccctttattttttcagagCGTCTTGGTCCTCCACGTGATGTCACACGCAGCCTGCAACTCTTCCCATTGTACCGTTTCATGGGCCCCACCCTCCACCTGGGCATCCCTGGCAGCACGGGACTATCAGTTCGAGGTCCAGTGGCAAgtattttagagcttcttctttctgggaaagcataggggatgctatgccaa Alignment from CESAR agCGACTCGGTCCCCCACGTGACGTCACC-GCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aatgtagagcttgcacatgtttcctcttttttgtccctttattttttcagagCGTCTTGGTCCTCCACGTGATGTCACACGCAGCCTGCAACTCTTCCCATTGTACCGTTTCATGGGCCCCACCCTCCACCTGGGCATCCCTGGCAGCACGGGACTATCAGTTCGAGGTCCAGTGGCAAgtattttagagcttcttctttctgggaaagcataggggatgctatgccaa Alignment from Spaln_aa2Genome AGCGACTCGGTCCCCCACGTGACGTCACC-GCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aatgtagagcttgcacatgtttcctcttttttgtccctttattttttcagAGCGTCTTGGTCCTCCACGTGATGTCACAcGCAGCCTGCAACTCTTCCCATTGTACCGTTTCATGGGCCCCACCCTCCACCTGGGCATCCCTGGCAGCACGGGACTATCAGTTCGAGGTCCAGTGGCAAgtattttagagcttcttctttctgggaaagcataggggatgctatgccaa Alignment from Spaln_nt2Genome AGCGACTCGGTCCCCCACGTGACGTCAC-CGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aatgtagagcttgcacatgtttcctcttttttgtccctttattttttcagAGCGTCTTGGTCCTCCACGTGATGTCACACGCAGCCTGCAACTCTTCCCATTGTACCGTTTCATGGGCCCCACCCTCCACCTGGGCATCCCTGGCAGCACGGGACTATCAGTTCGAGGTCCAGTGGCAAgtattttagagcttcttctttctgggaaagcataggggatgctatgccaa Alignment from Pairagon AGCGACTCGGTCCCCCACGTGACGTCAC-CGCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aatgtagagcttgcacatgtttcctcttttttgtccctttattttttcagAGCGTCTTGGTCCTCCACGTGATGTCACACGCAGCCTGCAACTCTTCCCATTGTACCGTTTCATGGGCCCCACCCTCCACCTGGGCATCCCTGGCAGCACGGGACTATCAGTTCGAGGTCCAGTGGCAAgtattttagagcttcttctttctgggaaagcataggggatgctatgccaa Alignment from Exonerate_protein2genome AGCGACTCGGTCCCCCACGTGACGTCACC-GCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aatgtagagcttgcacatgtttcctcttttttgtccctttattttttcagAGCGTCTTGGTCCTCCACGTGATGTCACACGCAGCCTGCAACTCTTCCCATTGTACCGTTTCATGGGCCCCACCCTCCACCTGGGCATCCCTGGCAGCACGGGACTATCAGTTCGAGGTCCAGTGGCAAgtattttagagcttcttctttctgggaaagcataggggatgctatgccaa Alignment from Exonerate_coding2genome AGCGACTCGGTCCCCCACGTGACGTCACC-GCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aatgtagagcttgcacatgtttcctcttttttgtccctttattttttcagAGCGTCTTGGTCCTCCACGTGATGTCACACGCAGCCTGCAACTCTTCCCATTGTACCGTTTCATGGGCCCCACCCTCCACCTGGGCATCCCTGGCAGCACGGGACTATCAGTTCGAGGTCCAGTGGCAAgtattttagagcttcttctttctgggaaagcataggggatgctatgccaa Alignment from GeneWise AGCGACTCGGTCCCCCACGTGACGTCACC-GCGTCCTGTAACTCTTCCCACTGCACCGTCTCGTGGGCCCCGCCCTCGACCTGGGCATCCTTGACGGCCCGGGACTTCCAGTTTGAGGTCCAGTGGCAG aatgtagagcttgcacatgtttcctcttttttgtccctttattttttcagAGCGTCTTGGTCCTCCACGTGATGTCACACGCAGCCTGCAACTCTTCCCATTGTACCGTTTCATGGGCCCCACCCTCCACCTGGGCATCCCTGGCAGCACGGGACTATCAGTTCGAGGTCCAGTGGCAAgtattttagagcttcttctttctgggaaagcataggggatgctatgccaa #### Ctsf_ID674_2 --> 0 - 0 Original Alignment GCCGGCCAGGGCTCTCTGTTCTCCCTGGAA-GCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaaggtgaaagggagtcttggccaactcctacctcttccaccttcagGCTGGCCAGGGCTCCCTGTTCTCCCTGGAACTCCACACTAGATGAGCCACCTTGCAATGATCCCTTGGTGTGCTCACTTCCTGAAACAAAGAAGACTGTGgtgagatagtggtcacattgttacggccctcctgtcaagacatcgtctaa Alignment from CESAR GCCGGCCAGGGCTCTCTGTTCTCCCTGGAA-GCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaaggtgaaagggagtcttggccaactcctacctcttccaccttcagGCTGGCCAGGGCTCCCTGTTCTCCCTGGAACTCCACACTAGATGAGCCACCTTGCAATGATCCCTTGGTGTGCTCACTTCCTGAAACAAAGAAGACTGTGgtgagatagtggtcacattgttacggccctcctgtcaagacatcgtctaa Alignment from Spaln_aa2Genome GCCGGCCAGGGCTCTCTGTTCTCCCTGGAA-GCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaaggtgaaagggagtcttggccaactcctacctcttccaccttcagGCTGGCCAGGGCTCCCTGTTCTCCCTGGAAcTCCACACTAGATGAGCCACCTTGCAATGATCCCTTGGTGTGCTCACTTCCTGAAACAAAGAAGACTGTGgtgagatagtggtcacattgttacggccctcctgtcaagacatcgtctaa Alignment from Spaln_nt2Genome GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAG-CCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaaggtgaaagggagtcttggccaactcctacctcttccaccttcagGCTGGCCAGGGCTCCCTGTTCTCCCTGGAACTCCACACTAGATGAGCCACCTTGCAATGATCCCTTGGTGTGCTCACTTCCTGAAACAAAGAAGACTGTGgtgagatagtggtcacattgttacggccctcctgtcaagacatcgtctaa Alignment from Pairagon GCCGGCCAGGGCTCTCTGTTCTCCCTGGAAG-CCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaaggtgaaagggagtcttggccaactcctacctcttccaccttcagGCTGGCCAGGGCTCCCTGTTCTCCCTGGAACTCCACACTAGATGAGCCACCTTGCAATGATCCCTTGGTGTGCTCACTTCCTGAAACAAAGAAGACTGTGgtgagatagtggtcacattgttacggccctcctgtcaagacatcgtctaa Alignment from Exonerate_protein2genome GCCGGCCAGGGCTCTCTGTTCTCCCTGGAA-GCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaaggtgaaagggagtcttggccaactcctacctcttccaccttcagGCTGGCCAGGGCTCCCTGTTCTCCCTGGAACTCCACACTAGATGAGCCACCTTGCAATGATCCCTTGGTGTGCTCACTTCCTGAAACAAAGAAGACTGTGgtgagatagtggtcacattgttacggccctcctgtcaagacatcgtctaa Alignment from Exonerate_coding2genome GCCGGCCAGGGCTCTCTGTTCTCCCTGGAA-GCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaaggtgaaagggagtcttggccaactcctacctcttccaccttcagGCTGGCCAGGGCTCCCTGTTCTCCCTGGAACTCCACACTAGATGAGCCACCTTGCAATGATCCCTTGGTGTGCTCACTTCCTGAAACAAAGAAGACTGTGgtgagatagtggtcacattgttacggccctcctgtcaagacatcgtctaa Alignment from GeneWise GCCGGCCAGGGCTCTCTGTTCTCCCTGGAA-GCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaaggtgaaagggagtcttggccaactcctacctcttccaccttcagGCTGGCCAGGGCTCCCTGTTCTCCCTGGAACTCCACACTAGATGAGCCACCTTGCAATGATCCCTTGGTGTGCTCACTTCCTGAAACAAAGAAGACTGTGgtgagatagtggtcacattgttacggccctcctgtcaagacatcgtctaa #### Ctsf_ID675_3 --> 0 - 1 Original Alignment CTCTGCAGTTTT-GAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAg ataaccaaaccacatctgtgaatcaatacttgactctccctttcgtacagCTCTGTAGTTTCCGAAGCCCTTGAAGAACTCAAGGAACACTTGCTCCTGAGGAGGGACTGCAGCCCAGTGAATGCCAGGGTCACTggtaagtgattactcaagtagatggggaagaggagagatcatacccaagta Alignment from CESAR CTCTGCAGTTTT-GAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAg ataaccaaaccacatctgtgaatcaatacttgactctccctttcgtacagCTCTGTAGTTTCCGAAGCCCTTGAAGAACTCAAGGAACACTTGCTCCTGAGGAGGGACTGCAGCCCAGTGAATGCCAGGGTCACTggtaagtgattactcaagtagatggggaagaggagagatcatacccaagta Alignment from Spaln_aa2Genome CTCTGCAGTTTT-GAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG ataaccaaaccacatctgtgaatcaatacttgactctccctttcgtacagCTCTGTAGTTTCcGAAGCCCTTGAAGAACTCAAGGAACACTTGCTCCTGAGGAGGGACTGCAGCCCAGTGAATGCCAGGGTCACTGgtaagtgattactcaagtagatggggaagaggagagatcatacccaagta Alignment from Spaln_nt2Genome CTCTGCAGTTTT-GAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG ataaccaaaccacatctgtgaatcaatacttgactctccctttcgtacagCTCTGTAGTTTCCGAAGCCCTTGAAGAACTCAAGGAACACTTGCTCCTGAGGAGGGACTGCAGCCCAGTGAATGCCAGGGTCACTGgtaagtgattactcaagtagatggggaagaggagagatcatacccaagta Alignment from Pairagon CTCTGCAGTTT-TGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG ataaccaaaccacatctgtgaatcaatacttgactctccctttcgtacagCTCTGTAGTTTCCGAAGCCCTTGAAGAACTCAAGGAACACTTGCTCCTGAGGAGGGACTGCAGCCCAGTGAATGCCAGGGTCACTGgtaagtgattactcaagtagatggggaagaggagagatcatacccaagta Alignment from Exonerate_protein2genome CTCTGCAGTTTT-GAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG ataaccaaaccacatctgtgaatcaatacttgactctccctttcgtacagCTCTGTAGTTTCCGAAGCCCTTGAAGAACTCAAGGAACACTTGCTCCTGAGGAGGGACTGCAGCCCAGTGAATGCCAGGGTCACTGgtaagtgattactcaagtagatggggaagaggagagatcatacccaagta Alignment from Exonerate_coding2genome CTCTGCAGTTTT-GAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG ataaccaaaccacatctgtgaatcaatacttgactctccctttcgtacagCTCTGTAGTTTCCGAAGCCCTTGAAGAACTCAAGGAACACTTGCTCCTGAGGAGGGACTGCAGCCCAGTGAATGCCAGGGTCACTGgtaagtgattactcaagtagatggggaagaggagagatcatacccaagta Alignment from GeneWise -------AGTTTTGAAGTCCTGGAAGAGCTAAAAGAACACTTGCTGCTGAGGAGGGACTGTAGCCCAGTGAATGCCAAGGTCACAG ataaccaaaccacatctgtgaatcaatacttgactctccctttcgtacagCTCTGTAGTTTCCGAAGCCCTTGAAGAACTCAAGGAACACTTGCTCCTGAGGAGGGACTGCAGCCCAGTGAATGCCAGGGTCACTGgtaagtgattactcaagtagatggggaagaggagagatcatacccaagta #### Ctsf_ID681_9 --> 2 - 1 Original Alignment agCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCC-AACGCCTATGCAGCCATAAAGAATTTGg cagacgaacccctccatagggtcccttaatatactttgttttctgtatagagCTCTCAGATTGTGGCAAAGAGGACAAGGCCTGCTTGGGTGGATTGCCCTCCCAATGCCTATGCAGCCATAAAGAATCTGggtaagttgaatccacctctggatgacgacagctaccatgttgttggaagt Alignment from CESAR agCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCC-AACGCCTATGCAGCCATAAAGAATTTGg cagacgaacccctccatagggtcccttaatatactttgttttctgtatagagCTCTCAGATTGTGGCAAAGAGGACAAGGCCTGCTTGGGTGGATTGCCCTCCCAATGCCTATGCAGCCATAAAGAATCTGggtaagttgaatccacctctggatgacgacagctaccatgttgttggaagt Alignment from Spaln_aa2Genome AGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCC-AACGCCTATGCAGCCATAAAGAATTTGG cagacgaacccctccatagggtcccttaatatactttgttttctgtatagAGCTCTCAGATTGTGGCAAAGAGGACAAGGCCTGCTTGGGTGGATTGCCCTCCcAATGCCTATGCAGCCATAAAGAATCTGGgtaagttgaatccacctctggatgacgacagctaccatgttgttggaagt Alignment from Spaln_nt2Genome AGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTC-CAACGCCTATGCAGCCATAAAGAATTTGG cagacgaacccctccatagggtcccttaatatactttgttttctgtatagAGCTCTCAGATTGTGGCAAAGAGGACAAGGCCTGCTTGGGTGGATTGCCCTCCCAATGCCTATGCAGCCATAAAGAATCTGGgtaagttgaatccacctctggatgacgacagctaccatgttgttggaagt Alignment from Pairagon AGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCT-CCAACGCCTATGCAGCCATAAAGAATTTGG cagacgaacccctccatagggtcccttaatatactttgttttctgtatagAGCTCTCAGATTGTGGCAAAGAGGACAAGGCCTGCTTGGGTGGATTGCCCTCCCAATGCCTATGCAGCCATAAAGAATCTGGgtaagttgaatccacctctggatgacgacagctaccatgttgttggaagt Alignment from Exonerate_protein2genome AGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCC-AACGCCTATGCAGCCATAAAGAATTTGG cagacgaacccctccatagggtcccttaatatactttgttttctgtatagAGCTCTCAGATTGTGGCAAAGAGGACAAGGCCTGCTTGGGTGGATTGCCCTCCCAATGCCTATGCAGCCATAAAGAATCTGGgtaagttgaatccacctctggatgacgacagctaccatgttgttggaagt Alignment from Exonerate_coding2genome AGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCCTCC-AACGCCTATGCAGCCATAAAGAATTTGG cagacgaacccctccatagggtcccttaatatactttgttttctgtatagAGCTCTCAGATTGTGGCAAAGAGGACAAGGCCTGCTTGGGTGGATTGCCCTCCCAATGCCTATGCAGCCATAAAGAATCTGGgtaagttgaatccacctctggatgacgacagctaccatgttgttggaagt Alignment from GeneWise AGCTCTTGGATTGTGACAAGGTGGACAAGGCCTGCTTGGGTGGATTGCCC-TCCAACGCCTATGCAGCCATAAAGAATTTGG cagacgaacccctccatagggtcccttaatatactttgttttctgtatagAGCTCTCAGATTGTGGCAAAGAGGACAAGGCCTGCTTGGGTGGATTGCCCTCCCAATGCCTATGCAGCCATAAAGAATCTGGgtaagttgaatccacctctggatgacgacagctaccatgttgttggaagt #### Ctsf_ID684_12 --> 0 - 1 Original Alignment TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCT-TGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACc gcaatgatcccacttctgaagctggccttttctacctcgaacccccacagTTCTACCATCATGGAATTGCTCACCCATTCCAGCCACTCTGCAGCCCTCTGGCTAATTGACCATGCAGTGGTGCTTGTAGGCCATGGCAACcgtcagctctgttgtctgcctcaggctacagtcggcagctcgacagcaacc Alignment from CESAR TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCT-TGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACc gcaatgatcccacttctgaagctggccttttctacctcgaacccccacagTTCTACCATCATGGAATTGCTCACCCATTCCAGCCACTCTGCAGCCCTCTGGCTAATTGACCATGCAGTGGTGCTTGTAGGCCATGGCAACcgtcagctctgttgtctgcctcaggctacagtcggcagctcgacagcaacc Alignment from Spaln_aa2Genome TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCT-TGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC gcaatgatcccacttctgaagctggccttttctacctcgaacccccacagTTCTACCATCATGGAATTGCTCACCCATTCCAGCCACTCTGCAGCCCTcTGGCTAATTGACCATGCAGTGGTGCTTGTAGGCCATGGCAACCgtcagctctgttgtctgcctcaggctacagtcggcagctcgacagcaacc Alignment from Spaln_nt2Genome TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCT-TGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC gcaatgatcccacttctgaagctggccttttctacctcgaacccccacagTTCTACCATCATGGAATTGCTCACCCATTCCAGCCACTCTGCAGCCCTCTGGCTAATTGACCATGCAGTGGTGCTTGTAGGCCATGGCAACCgtcagctctgttgtctgcctcaggctacagtcggcagctcgacagcaacc Alignment from Pairagon TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCT-TGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC gcaatgatcccacttctgaagctggccttttctacctcgaacccccacagTTCTACCATCATGGAATTGCTCACCCATTCCAGCCACTCTGCAGCCCTCTGGCTAATTGACCATGCAGTGGTGCTTGTAGGCCATGGCAACCgtcagctctgttgtctgcctcaggctacagtcggcagctcgacagcaacc Alignment from Exonerate_protein2genome TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCT-TGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC gcaatgatcccacttctgaagctggccttttctacctcgaacccccacagTTCTACCATCATGGAATTGCTCACCCATTCCAGCCACTCTGCAGCCCTCTGGCTAATTGACCATGCAGTGGTGCTTGTAGGCCATGGCAACCgtcagctctgttgtctgcctcaggctacagtcggcagctcgacagcaacc Alignment from Exonerate_coding2genome TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGCCCT-TGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC gcaatgatcccacttctgaagctggccttttctacctcgaacccccacagTTCTACCATCATGGAATTGCTCACCCATTCCAGCCACTCTGCAGCCCTCTGGCTAATTGACCATGCAGTGGTGCTTGTAGGCCATGGCAACCgtcagctctgttgtctgcctcaggctacagtcggcagctcgacagcaacc Alignment from GeneWise TTCTATCGCCACGGGATTGCTCACCCATTCCGGCCCCTCTGCAGC-CCTTGGTTCATCGACCATGCTGTGTTGCTGGTGGGCTATGGCAACC gcaatgatcccacttctgaagctggccttttctacctcgaacccccacagTTCTACCATCATGGAATTGCTCACCCATTCCAGCCACTCTGCAGCCCTCTGGCTAATTGACCATGCAGTGGTGCTTGTAGGCCATGGCAACCgtcagctctgttgtctgcctcaggctacagtcggcagctcgacagcaacc #### Ctsw_ID1017_9 --> 0 - 0 Original Alignment CATTACCAGAAGGGTGTCATCAAGGCTACACCC-AGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTC------TTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG aagttaatacggagatttcattgtacagcaaagcacgtttgcttcccaagTATTATCAGAAAGGTGTCATCAAGGCTACACCCCAGCTCCTGTGACCCTCGCCAAGTGGACCACCCTGTATTGCTCTTGCTGGTGGGTTTTGGTAAGAAGGAAGAGGGCATGCAAATGGGGACAGTCTTGGCGCATTCTCATAAACGTTGCCATTCCTTCTCATACTGGGTCTTGAAAAACTCTTGGGGAGCCCACTGGGGTGAGAAGgtaagtgtgtggaaaagcaatgaagcagaccataaggcctctttttgact Alignment from CESAR CATTACCAGAAGGGTGTCATCAAGGCTACA-CCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTC------TTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG aagttaatacggagatttcattgtacagcaaagcacgtttgcttcccaagTATTATCAGAAAGGTGTCATCAAGGCTACACCCCAGCTCCTGTGACCCTCGCCAAGTGGACCACCCTGTATTGCTCTTGCTGGTGGGTTTTGGTAAGAAGGAAGAGGGCATGCAAATGGGGACAGTCTTGGCGCATTCTCATAAACGTTGCCATTCCTTCTCATACTGGGTCTTGAAAAACTCTTGGGGAGCCCACTGGGGTGAGAAGgtaagtgtgtggaaaagcaatgaagcagaccataaggcctctttttgact Alignment from Spaln_aa2Genome CATTACCAGAAGGGTGTCATCAAGGCTACA-CCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTCTTG------CTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG aagttaatacggagatttcattgtacagcaaagcacgtttgcttcccaagTATTATCAGAAAGGTGTCATCAAGGCTACAcCCCAGCTCCTGTGACCCTCGCCAAGTGGACCACCCTGTATTGCTCTTGCTGGTGGGTTTTGGTAAGAAGGAAGAGGGCATGCAAATGGGGACAGTCTTGGCGCATTCTCATAAACGTTGCCATTCCTTCTCATACTGGGTCTTGAAAAACTCTTGGGGAGCCCACTGGGGTGAGAAGgtaagtgtgtggaaaagcaatgaagcagaccataaggcctctttttgact Alignment from Spaln_nt2Genome CATTACCAGAAGGGTGTCATCAAGGCTACA-CCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTC------TTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG aagttaatacggagatttcattgtacagcaaagcacgtttgcttcccaagTATTATCAGAAAGGTGTCATCAAGGCTACACCCCAGCTCCTGTGACCCTCGCCAAGTGGACCACCCTGTATTGCTCTTGCTGGTGGGTTTTGGTAAGAAGGAAGAGGGCATGCAAATGGGGACAGTCTTGGCGCATTCTCATAAACGTTGCCATTCCTTCTCATACTGGGTCTTGAAAAACTCTTGGGGAGCCCACTGGGGTGAGAAGgtaagtgtgtggaaaagcaatgaagcagaccataaggcctctttttgact Alignment from Pairagon CATTACCAGAAGGGTGTCATCAAGGCTACA-CCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTG------TCTTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG aagttaatacggagatttcattgtacagcaaagcacgtttgcttcccaagTATTATCAGAAAGGTGTCATCAAGGCTACACCCCAGCTCCTGTGACCCTCGCCAAGTGGACCACCCTGTATTGCTCTTGCTGGTGGGTTTTGGTAAGAAGGAAGAGGGCATGCAAATGGGGACAGTCTTGGCGCATTCTCATAAACGTTGCCATTCCTTCTCATACTGGGTCTTGAAAAACTCTTGGGGAGCCCACTGGGGTGAGAAGgtaagtgtgtggaaaagcaatgaagcagaccataaggcctctttttgact Alignment from Exonerate_protein2genome CATTACCAGAAGGGTGTCATCAAGGCTACA-CCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTC------TTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG aagttaatacggagatttcattgtacagcaaagcacgtttgcttcccaagTATTATCAGAAAGGTGTCATCAAGGCTACACCCCAGCTCCTGTGACCCTCGCCAAGTGGACCACCCTGTATTGCTCTTGCTGGTGGGTTTTGGTAAGAAGGAAGAGGGCATGCAAATGGGGACAGTCTTGGCGCATTCTCATAAACGTTGCCATTCCTTCTCATACTGGGTCTTGAAAAACTCTTGGGGAGCCCACTGGGGTGAGAAGgtaagtgtgtggaaaagcaatgaagcagaccataaggcctctttttgact Alignment from Exonerate_coding2genome CATTACCAGAAGGGTGTCATCAAGGCTACA-CCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTC------TTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG aagttaatacggagatttcattgtacagcaaagcacgtttgcttcccaagTATTATCAGAAAGGTGTCATCAAGGCTACACCCCAGCTCCTGTGACCCTCGCCAAGTGGACCACCCTGTATTGCTCTTGCTGGTGGGTTTTGGTAAGAAGGAAGAGGGCATGCAAATGGGGACAGTCTTGGCGCATTCTCATAAACGTTGCCATTCCTTCTCATACTGGGTCTTGAAAAACTCTTGGGGAGCCCACTGGGGTGAGAAGgtaagtgtgtggaaaagcaatgaagcagaccataaggcctctttttgact Alignment from GeneWise CATTACCAGAAGGGTGTCATCAAGGCTACACCC-AGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTCTTGCTG------GTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG aagttaatacggagatttcattgtacagcaaagcacgtttgcttcccaagTATTATCAGAAAGGTGTCATCAAGGCTACACCCCAGCTCCTGTGACCCTCGCCAAGTGGACCACCCTGTATTGCTCTTGCTGGTGGGTTTTGGTAAGAAGGAAGAGGGCATGCAAATGGGGACAGTCTTGGCGCATTCTCATAAACGTTGCCATTCCTTCTCATACTGGGTCTTGAAAAACTCTTGGGGAGCCCACTGGGGTGAGAAGgtaagtgtgtggaaaagcaatgaagcagaccataaggcctctttttgact #### Ctsw_ID1019_7 --> 2 - 1 Original Alignment gtGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTG-GCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGg gagtgcttagcatggtaggtttcttgctcatatcttccctcctaccgcaggtGGTCTGGCCAGTGAAAAGGAATATCCATTCCAGGGGGAAAGAAAGCCTCACAGATGCTTGGCTAAGAAGTATAAGGAAGTGCGCATGGATCCAG------GCCACATTGTCCAATAATGAACAGggtgagcccagggtaagatgggtgagttcatatgacctggctggcaatgga Alignment from CESAR gtGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTG-GCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGg gagtgcttagcatggtaggtttcttgctcatatcttccctcctaccgcaggtGGTCTGGCCAGTGAAAAGGAATATCCATTCCAGGGGGAAAGAAAGCCTCACAGATGCTTGGCTAAGAAGTATAAGGAAGTGCGCATGGATCCAG------GCCACATTGTCCAATAATGAACAGggtgagcccagggtaagatgggtgagttcatatgacctggctggcaatgga Alignment from Spaln_aa2Genome GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTG-GCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG gagtgcttagcatggtaggtttcttgctcatatcttccctcctaccgcagGTGGTCTGGCCAGTGAAAAGGAATATCCATTCCAGGGGGAAAGAAAGCCTCACAGATGCTTGGCTAAGAAGTATAAGGAAGTGcGCATGGATCCAG------GCCACATTGTCCAATAATGAACAGGgtgagcccagggtaagatgggtgagttcatatgacctggctggcaatgga Alignment from Spaln_nt2Genome GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTG-GCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG gagtgcttagcatggtaggtttcttgctcatatcttccctcctaccgcagGTGGTCTGGCCAGTGAAAAGGAATATCCATTCCAGGGGGAAAGAAAGCCTCACAGATGCTTGGCTAAGAAGTATAAGGAAGTGCGCATGGATCCAGG------CCACATTGTCCAATAATGAACAGGgtgagcccagggtaagatgggtgagttcatatgacctggctggcaatgga Alignment from Pairagon GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTG-GCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG gagtgcttagcatggtaggtttcttgctcatatcttccctcctaccgcagGTGGTCTGGCCAGTGAAAAGGAATATCCATTCCAGGGGGAAAGAAAGCCTCACAGATGCTTGGCTAAGAAGTATAAGGAAGTGCGCATGGATCCAGG------CCACATTGTCCAATAATGAACAGGgtgagcccagggtaagatgggtgagttcatatgacctggctggcaatgga Alignment from Exonerate_protein2genome GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTG-GCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG gagtgcttagcatggtaggtttcttgctcatatcttccctcctaccgcagGTGGTCTGGCCAGTGAAAAGGAATATCCATTCCAGGGGGAAAGAAAGCCTCACAGATGCTTGGCTAAGAAGTATAAGGAAGTGCGCATGGATCCAG------GCCACATTGTCCAATAATGAACAGGgtgagcccagggtaagatgggtgagttcatatgacctggctggcaatgga Alignment from Exonerate_coding2genome GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTG-GCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG gagtgcttagcatggtaggtttcttgctcatatcttccctcctaccgcagGTGGTCTGGCCAGTGAAAAGGAATATCCATTCCAGGGGGAAAGAAAGCCTCACAGATGCTTGGCTAAGAAGTATAAGGAAGTGCGCATGGATCCAG------GCCACATTGTCCAATAATGAACAGGgtgagcccagggtaagatgggtgagttcatatgacctggctggcaatgga Alignment from GeneWise GTGGCCTGGCCAGTGAAAAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTG-GCCTGGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGG gagtgcttagcatggtaggtttcttgctcatatcttccctcctaccgcagGTGGTCTGGCCAGTGAAAAGGAATATCCATTCCAGGGGGAAAGAAAGCCTCACAGATGCTTGGCTAAGAAGTATAAGGAAGTGCGCATGGATCCAG------GCCACATTGTCCAATAATGAACAGGgtgagcccagggtaagatgggtgagttcatatgacctggctggcaatgga #### Ctsw_ID1020_6 --> 2 - 1 Original Alignment agCTGCTGGACTGCGAACGCTGTGGA-AATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACa caaagtccctgcctgcatgtggcaattactagttgctctgttacttgcagagCTTTTGGACTGTAAGCACTGTGGCCAATGGCTGCAATGATGGCTTTGTATGGGATGCATATCTAACTGTCCTCAATAATagtacgttcctatgcctaacaggagatgaagtgagtgcttagcatggtagg Alignment from CESAR agCTGCTGGACTGCGAACGCTGTGGA-AATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACa caaagtccctgcctgcatgtggcaattactagttgctctgttacttgcagagCTTTTGGACTGTAAGCACTGTGGCCAATGGCTGCAATGATGGCTTTGTATGGGATGCATATCTAACTGTCCTCAATAATagtacgttcctatgcctaacaggagatgaagtgagtgcttagcatggtagg Alignment from Spaln_aa2Genome AGCTGCTGGACTGCGAACGCTGTGGA-AATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA caaagtccctgcctgcatgtggcaattactagttgctctgttacttgcagAGCTTTTGGACTGTAAGCACTGTGGCcAATGGCTGCAATGATGGCTTTGTATGGGATGCATATCTAACTGTCCTCAATAATAgtacgttcctatgcctaacaggagatgaagtgagtgcttagcatggtagg Alignment from Spaln_nt2Genome AGCTGCTGGACTGCGAACGCTGTGGA-AATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA caaagtccctgcctgcatgtggcaattactagttgctctgttacttgcagAGCTTTTGGACTGTAAGCACTGTGGCCAATGGCTGCAATGATGGCTTTGTATGGGATGCATATCTAACTGTCCTCAATAATAgtacgttcctatgcctaacaggagatgaagtgagtgcttagcatggtagg Alignment from Pairagon AGCTGCTGGACTGCGAACGCTGTGG-AAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA caaagtccctgcctgcatgtggcaattactagttgctctgttacttgcagAGCTTTTGGACTGTAAGCACTGTGGCCAATGGCTGCAATGATGGCTTTGTATGGGATGCATATCTAACTGTCCTCAATAATAgtacgttcctatgcctaacaggagatgaagtgagtgcttagcatggtagg Alignment from Exonerate_protein2genome AGCTGCTGGACTGCGAACGCTGTGGA-AATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA caaagtccctgcctgcatgtggcaattactagttgctctgttacttgcagAGCTTTTGGACTGTAAGCACTGTGGCCAATGGCTGCAATGATGGCTTTGTATGGGATGCATATCTAACTGTCCTCAATAATAgtacgttcctatgcctaacaggagatgaagtgagtgcttagcatggtagg Alignment from Exonerate_coding2genome AGCTGCTGGACTGCGAACGCTGTGGA-AATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA caaagtccctgcctgcatgtggcaattactagttgctctgttacttgcagAGCTTTTGGACTGTAAGCACTGTGGCCAATGGCTGCAATGATGGCTTTGTATGGGATGCATATCTAACTGTCCTCAATAATAgtacgttcctatgcctaacaggagatgaagtgagtgcttagcatggtagg Alignment from GeneWise AGCTGCTGGACTGCGAACGCTGT-GGAAATGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACA caaagtccctgcctgcatgtggcaattactagttgctctgttacttgcagAGCTTTTGGACTGTAAGCACTGTGGCCAATGGCTGCAATGATGGCTTTGTATGGGATGCATATCTAACTGTCCTCAATAATAgtacgttcctatgcctaacaggagatgaagtgagtgcttagcatggtagg #### Cwf19l1_ID8941_3 --> 0 - 1 Original Alignment CTGCTGTTGTGTGTAGGAAACTTTTTTGGCTCTGCCCAGGATGCTGAGTGG-GAGGAGTATAAGACCGGCAACAAGAAAg tcaatagaacgctaaaaaactcaatttaatgtttgttttctccctggaagTTGCTGTTATGTGTAGGAAACTTCTTTGGCTCTGCCCAGGATGCTGAGTGGCGAGGAATATAAGACCGGCAACAAGAAAggtaggagggcattggtcaagtatgatgtatgtcatagcctaatgcagaga Alignment from CESAR CTGCTGTTGTGTGTAGGAAACTTTTTTGGCTCTGCCCAGGATGCTGAGTGG-GAGGAGTATAAGACCGGCAACAAGAAAg tcaatagaacgctaaaaaactcaatttaatgtttgttttctccctggaagTTGCTGTTATGTGTAGGAAACTTCTTTGGCTCTGCCCAGGATGCTGAGTGGCGAGGAATATAAGACCGGCAACAAGAAAggtaggagggcattggtcaagtatgatgtatgtcatagcctaatgcagaga Alignment from Spaln_aa2Genome CTGCTGTTGTGTGTAGGAAACTTTTTTGGCTCTGCCCAGGATGCTGAGTGG-GAGGAGTATAAGACCGGCAACAAGAAAG tcaatagaacgctaaaaaactcaatttaatgtttgttttctccctggaagTTGCTGTTATGTGTAGGAAACTTCTTTGGCTCTGCCCAGGATGCTGAGTGGcGAGGAATATAAGACCGGCAACAAGAAAGgtaggagggcattggtcaagtatgatgtatgtcatagcctaatgcagaga Alignment from Spaln_nt2Genome CTGCTGTTGTGTGTAGGAAACTTTTTTGGCTCTGCCCAGGATGCTGAGTGG-GAGGAGTATAAGACCGGCAACAAGAAAG tcaatagaacgctaaaaaactcaatttaatgtttgttttctccctggaagTTGCTGTTATGTGTAGGAAACTTCTTTGGCTCTGCCCAGGATGCTGAGTGGCGAGGAATATAAGACCGGCAACAAGAAAGgtaggagggcattggtcaagtatgatgtatgtcatagcctaatgcagaga Alignment from Pairagon CTGCTGTTGTGTGTAGGAAACTTTTTTGGCTCTGCCCAGGATGCTGAGTGG-GAGGAGTATAAGACCGGCAACAAGAAAG tcaatagaacgctaaaaaactcaatttaatgtttgttttctccctggaagTTGCTGTTATGTGTAGGAAACTTCTTTGGCTCTGCCCAGGATGCTGAGTGGCGAGGAATATAAGACCGGCAACAAGAAAGgtaggagggcattggtcaagtatgatgtatgtcatagcctaatgcagaga Alignment from Exonerate_protein2genome CTGCTGTTGTGTGTAGGAAACTTTTTTGGCTCTGCCCAGGATGCTGAGTGG-GAGGAGTATAAGACCGGCAACAAGAAAG tcaatagaacgctaaaaaactcaatttaatgtttgttttctccctggaagTTGCTGTTATGTGTAGGAAACTTCTTTGGCTCTGCCCAGGATGCTGAGTGGCGAGGAATATAAGACCGGCAACAAGAAAGgtaggagggcattggtcaagtatgatgtatgtcatagcctaatgcagaga Alignment from Exonerate_coding2genome CTGCTGTTGTGTGTAGGAAACTTTTTTGGCTCTGCCCAGGATGCTGAGTGG-GAGGAGTATAAGACCGGCAACAAGAAAG tcaatagaacgctaaaaaactcaatttaatgtttgttttctccctggaagTTGCTGTTATGTGTAGGAAACTTCTTTGGCTCTGCCCAGGATGCTGAGTGGCGAGGAATATAAGACCGGCAACAAGAAAGgtaggagggcattggtcaagtatgatgtatgtcatagcctaatgcagaga Alignment from GeneWise CTGCTGTTGTGTGTAGGAAACTTTTTTGGCTCTGCCCAGGATGCTGAGTGG-GAGGAGTATAAGACCGGCAACAAGAAAG tcaatagaacgctaaaaaactcaatttaatgtttgttttctccctggaagTTGCTGTTATGTGTAGGAAACTTCTTTGGCTCTGCCCAGGATGCTGAGTGGCGAGGAATATAAGACCGGCAACAAGAAAGgtaggagggcattggtcaagtatgatgtatgtcatagcctaatgcagaga #### Cyp26a1_ID7414_2 --> 0 - 0 Original Alignment CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGC-ACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG catgacaaagtcacttaatacacattacttcattgtattgtgtcatttagCGCAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCATCTACAAGACACATCTGTTTGGCCGGCCAACAGTGCGGGTGATGGGTACAGATAATGTTCGTCGTATTTTGTTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCCATCATCCTGGGTGCTGGCTGCCTTTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtgagcattggcaggccacttcttcaacagtgtgattgatgtcatcctat Alignment from CESAR CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGC-ACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG catgacaaagtcacttaatacacattacttcattgtattgtgtcatttagCGCAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCATCTACAAGACACATCTGTTTGGCCGGCCAACAGTGCGGGTGATGGGTACAGATAATGTTCGTCGTATTTTGTTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCCATCATCCTGGGTGCTGGCTGCCTTTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtgagcattggcaggccacttcttcaacagtgtgattgatgtcatcctat Alignment from Spaln_aa2Genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGC-ACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG catgacaaagtcacttaatacacattacttcattgtattgtgtcatttagCGCAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCATCTACAAGACACATCTGTTTGGCCGGCCAACAGTGCGGGTGATGGGTACAGATAATGTTCGTCGTATTTTGTTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCcATCATCCTGGGTGCTGGCTGCCTTTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtgagcattggcaggccacttcttcaacagtgtgattgatgtcatcctat Alignment from Spaln_nt2Genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCG-CACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG catgacaaagtcacttaatacacattacttcattgtattgtgtcatttagCGCAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCATCTACAAGACACATCTGTTTGGCCGGCCAACAGTGCGGGTGATGGGTACAGATAATGTTCGTCGTATTTTGTTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCCATCATCCTGGGTGCTGGCTGCCTTTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtgagcattggcaggccacttcttcaacagtgtgattgatgtcatcctat Alignment from Pairagon CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCG-CACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG catgacaaagtcacttaatacacattacttcattgtattgtgtcatttagCGCAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCATCTACAAGACACATCTGTTTGGCCGGCCAACAGTGCGGGTGATGGGTACAGATAATGTTCGTCGTATTTTGTTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCCATCATCCTGGGTGCTGGCTGCCTTTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtgagcattggcaggccacttcttcaacagtgtgattgatgtcatcctat Alignment from Exonerate_protein2genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGC-ACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG catgacaaagtcacttaatacacattacttcattgtattgtgtcatttagCGCAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCATCTACAAGACACATCTGTTTGGCCGGCCAACAGTGCGGGTGATGGGTACAGATAATGTTCGTCGTATTTTGTTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCCATCATCCTGGGTGCTGGCTGCCTTTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtgagcattggcaggccacttcttcaacagtgtgattgatgtcatcctat Alignment from Exonerate_coding2genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGC-ACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG catgacaaagtcacttaatacacattacttcattgtattgtgtcatttagCGCAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCATCTACAAGACACATCTGTTTGGCCGGCCAACAGTGCGGGTGATGGGTACAGATAATGTTCGTCGTATTTTGTTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCCATCATCCTGGGTGCTGGCTGCCTTTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtgagcattggcaggccacttcttcaacagtgtgattgatgtcatcctat Alignment from GeneWise CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGC-ACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG catgacaaagtcacttaatacacattacttcattgtattgtgtcatttagCGCAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCATCTACAAGACACATCTGTTTGGCCGGCCAACAGTGCGGGTGATGGGTACAGATAATGTTCGTCGTATTTTGTTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCCATCATCCTGGGTGCTGGCTGCCTTTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtgagcattggcaggccacttcttcaacagtgtgattgatgtcatcctat #### Cyp26a1_ID7415_3 --> 0 - 0 Original Alignment GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGT-CTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC gaggagagggctaagaaaggattgtagttaatttctcttatttcttctagGTTATTATGCAGGCATTCAGTCGGGAGGCACTCCAGTGTTATGTCCCTGTCATTGCTGAGGAAGTCAGCAGTTGTCTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGCGAGCCAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGTCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTgtactttgttttagaactctttctgtcgtagGGTGTT---ACACGCAACA Alignment from CESAR GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGT-CTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC gaggagagggctaagaaaggattgtagttaatttctcttatttcttctagGTTATTATGCAGGCATTCAGTCGGGAGGCACTCCAGTGTTATGTCCCTGTCATTGCTGAGGAAGTCAGCAGTTGTCTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGCGAGCCAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGTCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTgtactttgtgttcactctatgttggttgcagGGTGTT---ACACGCAACA Alignment from Spaln_aa2Genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGT-CTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC gaggagagggctaagaaaggattgtagttaatttctcttatttcttctagGTTATTATGCAGGCATTCAGTCGGGAGGCACTCCAGTGTTATGTCCCTGTCATTGCTGAGGAAGTCAGCAGTTGTcTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGCGAGCCAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGTCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTgtactttgttttagaactctttctgtcgtagGGTGTT---ACACGCAACA Alignment from Spaln_nt2Genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTC-TGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG-------------------------------GGCGTGAAGGCGCGGAACC gaggagagggctaagaaaggattgtagttaatttctcttatttcttctagGTTATTATGCAGGCATTCAGTCGGGAGGCACTCCAGTGTTATGTCCCTGTCATTGCTGAGGAAGTCAGCAGTTGTCTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGCGAGCCAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGTCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTGTACTTTGTTTTAGAACTCTTTCTGTCGTAGGGTGTTA---CACGCAACA Alignment from Pairagon GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGTC-TGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCG-------------------------------GGGCGTGAAGGCGCGGAACC gaggagagggctaagaaaggattgtagttaatttctcttatttcttctagGTTATTATGCAGGCATTCAGTCGGGAGGCACTCCAGTGTTATGTCCCTGTCATTGCTGAGGAAGTCAGCAGTTGTCTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGCGAGCCAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGTCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTGTACTTTGTTTTAGAACTCTTTCTGTCGTAGGGTGTTA---CACGCAACA Alignment from Exonerate_protein2genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGT-CTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC gaggagagggctaagaaaggattgtagttaatttctcttatttcttctagGTTATTATGCAGGCATTCAGTCGGGAGGCACTCCAGTGTTATGTCCCTGTCATTGCTGAGGAAGTCAGCAGTTGTCTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGCGAGCCAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGTCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTgtactttgttttagaactctttctgtcgtagGGTGTT---ACACGCAACA Alignment from Exonerate_coding2genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGT-CTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC gaggagagggctaagaaaggattgtagttaatttctcttatttcttctagGTTATTATGCAGGCATTCAGTCGGGAGGCACTCCAGTGTTATGTCCCTGTCATTGCTGAGGAAGTCAGCAGTTGTCTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGCGAGCCAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGTCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTgtactttgttttagaactctttctgtcgtagGGTGTT---ACACGCAACA Alignment from GeneWise GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATCGCTGAGGAAGTCAGCAGTTGT-CTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC gaggagagggctaagaaaggattgtagttaatttctcttatttcttctagGTTATTATGCAGGCATTCAGTCGGGAGGCACTCCAGTGTTATGTCCCTGTCATTGCTGAGGAAGTCAGCAGTTGTCTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGCGAGCCAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCTTGTGGAGTCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTgtactttgttttagaactctttctgtcgtagGGTGTT---ACACGCAACA #### Cyp26a1_ID7418_6 --> 0 - 0 Original Alignment GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAG-GAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT gctttcaaatacttgaggaccccatcaaagggccatggttcctgttgcagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTGATTAAGCGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACATTTGGGCTGAATgtgagagcactccttgtccactggacatagcccttgctcttgcacactat Alignment from CESAR GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAG-GAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT gctttcaaatacttgaggaccccatcaaagggccatggttcctgttgcagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTGATTAAGCGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACATTTGGGCTGAATgtgagagcactccttgtccactggacatagcccttgctcttgcacactat Alignment from Spaln_aa2Genome GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAG-GAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT gctttcaaatacttgaggaccccatcaaagggccatggttcctgttgcagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTGATTAAGcGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACATTTGGGCTGAATgtgagagcactccttgtccactggacatagcccttgctcttgcacactat Alignment from Spaln_nt2Genome GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAG-GAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT gctttcaaatacttgaggaccccatcaaagggccatggttcctgttgcagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTGATTAAGCGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACATTTGGGCTGAATgtgagagcactccttgtccactggacatagcccttgctcttgcacactat Alignment from Pairagon GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAG-GAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT gctttcaaatacttgaggaccccatcaaagggccatggttcctgttgcagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTGATTAAGCGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACATTTGGGCTGAATgtgagagcactccttgtccactggacatagcccttgctcttgcacactat Alignment from Exonerate_protein2genome GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAG-GAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT gctttcaaatacttgaggaccccatcaaagggccatggttcctgttgcagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTGATTAAGCGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACATTTGGGCTGAATgtgagagcactccttgtccactggacatagcccttgctcttgcacactat Alignment from Exonerate_coding2genome GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATTAAG-GAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT gctttcaaatacttgaggaccccatcaaagggccatggttcctgttgcagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTGATTAAGCGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACATTTGGGCTGAATgtgagagcactccttgtccactggacatagcccttgctcttgcacactat Alignment from GeneWise GGCTTACTTTGCAAGAGCAATCAAGACAACAAGTTAGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTCATT-AAGGAGACCCTGCGATTGAATCCTCCGGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACTTTTGAGCTGAAT gctttcaaatacttgaggaccccatcaaagggccatggttcctgttgcagGGCTTACTTTGCAAGAGCAATCAGGACAACAAGTTGGACATGGAAACTTTGGAACAGCTTAAATACACTGGGTGTGTGATTAAGCGAGACCCTGCGATTGAATCCTCCAGTTCCAGGAGGGTTTCGGGTTGCTCTGAAGACATTTGGGCTGAATgtgagagcactccttgtccactggacatagcccttgctcttgcacactat #### Cyp2c50_ID7861_2 --> 0 - 1 Original Alignment TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAA-GCTACTAATGGAATGg ttgaaatgcagtcaaatctttctagtctttgtttcatttcttcaatgaagCTATCCAAAGTCTATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTGTTACAGGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGAAGAGAAAGACTACCAGTTTTTGATAAACGCTACCAATGGAATGggtaagcatagctgtggaataacagtgagagaatgtgtgagcccattccag Alignment from CESAR TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAA-GCTACTAATGGAATGg ttgaaatgcagtcaaatctttctagtctttgtttcatttcttcaatgaagCTATCCAAAGTCTATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTGTTACAGGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGAAGAGAAAGACTACCAGTTTTTGATAAACGCTACCAATGGAATGggtaagcatagctgtggaataacagtgagagaatgtgtgagcccattccag Alignment from Spaln_aa2Genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAA-GCTACTAATGGAATGG ttgaaatgcagtcaaatctttctagtctttgtttcatttcttcaatgaagCTATCCAAAGTCTATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTGTTACAGGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGAAGAGAAAGACTACCAGTTTTTGATAAAcGCTACCAATGGAATGGgtaagcatagctgtggaataacagtgagagaatgtgtgagcccattccag Alignment from Spaln_nt2Genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAA-GCTACTAATGGAATGG ttgaaatgcagtcaaatctttctagtctttgtttcatttcttcaatgaagCTATCCAAAGTCTATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTGTTACAGGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGAAGAGAAAGACTACCAGTTTTTGATAAACGCTACCAATGGAATGGgtaagcatagctgtggaataacagtgagagaatgtgtgagcccattccag Alignment from Pairagon TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAA-GCTACTAATGGAATGG ttgaaatgcagtcaaatctttctagtctttgtttcatttcttcaatgaagCTATCCAAAGTCTATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTGTTACAGGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGAAGAGAAAGACTACCAGTTTTTGATAAACGCTACCAATGGAATGGgtaagcatagctgtggaataacagtgagagaatgtgtgagcccattccag Alignment from Exonerate_protein2genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAA-GCTACTAATGGAATGG ttgaaatgcagtcaaatctttctagtctttgtttcatttcttcaatgaagCTATCCAAAGTCTATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTGTTACAGGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGAAGAGAAAGACTACCAGTTTTTGATAAACGCTACCAATGGAATGGgtaagcatagctgtggaataacagtgagagaatgtgtgagcccattccag Alignment from Exonerate_coding2genome TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAA-GCTACTAATGGAATGG ttgaaatgcagtcaaatctttctagtctttgtttcatttcttcaatgaagCTATCCAAAGTCTATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTGTTACAGGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGAAGAGAAAGACTACCAGTTTTTGATAAACGCTACCAATGGAATGGgtaagcatagctgtggaataacagtgagagaatgtgtgagcccattccag Alignment from GeneWise TTATCAAAAGTTTATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAA-GCTACTAATGGAATG--------------------------------------------------- ttgaaatgcagtcaaatctttctagtctttgtttcatttcttcaatgaagCTATCCAAAGTCTATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTGTTACAGGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTTGCTGGAAGAGAAAGACTACCAGTTTTTGATAAACGCTACCAATGGAATGGGTAAGCATAGCTGTGGAATAACAGTGAGAGAATGTGTGAGCCCATTCCAG #### Cyp2c50_ID7862_3 --> 2 - 1 Original Alignment gcATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGT-GTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg gagagaatgtgtgagcccattccagctaaatcttctgctatgttttataggaATTATATTCAGTAAGGGAAATGTGTGGAAAAATATAAGGCACTTCTCACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGCCCTTCAAGAGGAAGCCCGTTGGCTTGTTGAGGAACTTAGGAAAACCAATggtagggcaggtgcagacccagaacttagtgtgatcttaatcaggtttttc Alignment from CESAR gcATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGT-GTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATg gagagaatgtgtgagcccattccagctaaatcttctgctatgttttataggaATTATATTCAGTAAGGGAAATGTGTGGAAAAATATAAGGCACTTCTCACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGCCCTTCAAGAGGAAGCCCGTTGGCTTGTTGAGGAACTTAGGAAAACCAATggtagggcaggtgcagacccagaacttagtgtgatcttaatcaggtttttc Alignment from Spaln_aa2Genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGT-GTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG gagagaatgtgtgagcccattccagctaaatcttctgctatgttttatagGAATTATATTCAGTAAGGGAAATGTGTGGAAAAATATAAGGCACTTCTCACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGCcCTTCAAGAGGAAGCCCGTTGGCTTGTTGAGGAACTTAGGAAAACCAATGgtagggcaggtgcagacccagaacttagtgtgatcttaatcaggtttttc Alignment from Spaln_nt2Genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGTG-TTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG gagagaatgtgtgagcccattccagctaaatcttctgctatgttttatagGAATTATATTCAGTAAGGGAAATGTGTGGAAAAATATAAGGCACTTCTCACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGCCCTTCAAGAGGAAGCCCGTTGGCTTGTTGAGGAACTTAGGAAAACCAATGgtagggcaggtgcagacccagaacttagtgtgatcttaatcaggtttttc Alignment from Pairagon GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCG-TGTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG gagagaatgtgtgagcccattccagctaaatcttctgctatgttttatagGAATTATATTCAGTAAGGGAAATGTGTGGAAAAATATAAGGCACTTCTCACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGCCCTTCAAGAGGAAGCCCGTTGGCTTGTTGAGGAACTTAGGAAAACCAATGgtagggcaggtgcagacccagaacttagtgtgatcttaatcaggtttttc Alignment from Exonerate_protein2genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGT-GTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG gagagaatgtgtgagcccattccagctaaatcttctgctatgttttatagGAATTATATTCAGTAAGGGAAATGTGTGGAAAAATATAAGGCACTTCTCACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGCCCTTCAAGAGGAAGCCCGTTGGCTTGTTGAGGAACTTAGGAAAACCAATGgtagggcaggtgcagacccagaacttagtgtgatcttaatcaggtttttc Alignment from Exonerate_coding2genome GCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGT-GTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG gagagaatgtgtgagcccattccagctaaatcttctgctatgttttatagGAATTATATTCAGTAAGGGAAATGTGTGGAAAAATATAAGGCACTTCTCACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGCCCTTCAAGAGGAAGCCCGTTGGCTTGTTGAGGAACTTAGGAAAACCAATGgtagggcaggtgcagacccagaacttagtgtgatcttaatcaggtttttc Alignment from GeneWise -------------------------------------------------GGCATTATATTTAGTAAAGGAAATGTATGGAAAAACACAAGGCGCTTCTCACTCACGACTCTGCGGAATTTAGGCATGGGAAAAAGGAGCATTGAGGACCGT-GTTCAAGAGGAAGCACGTTGCCTTGTGGAGGAACTTAGGAAAACCAATG GAGAGAATGTGTGAGCCCATTCCAGCTAAATCTTCTGCTATGTTTTATAGGAATTATATTCAGTAAGGGAAATGTGTGGAAAAATATAAGGCACTTCTCACTTACAACTCTGCGAAATTTAGGCATGGGAAAAAGAAGCATTGAGGACCGCCCTTCAAGAGGAAGCCCGTTGGCTTGTTGAGGAACTTAGGAAAACCAATGgtagggcaggtgcagacccagaacttagtgtgatcttaatcaggtttttc #### Cyp2c54_ID7856_2 --> 0 - 1 Original Alignment TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAG---GAAGCTCTGGTTGACCATGGGGATGTC-TTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg tgacaaccaggggtggctacttcacattctttgacttctctctgaaacagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTTGTATTACATGGATATGAGGCAGTGAAGGAGGAAGCTCTTGCTGACCAAGGGGATGTTCTTTGCTGGAAGGGGAAGCCTCCCAGTTTTTGATAAAGCTACTAATGGAATGggtgagttttgtgttgcatagtatgtattgtggcagtacagtgagagccaa Alignment from CESAR TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAG---GAAGCTCTGGTTGACCATGGGGATGTC-TTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg tgacaaccaggggtggctacttcacattctttgacttctctctgaaacagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTTGTATTACATGGATATGAGGCAGTGAAGGAGGAAGCTCTTGCTGACCAAGGGGATGTTCTTTGCTGGAAGGGGAAGCCTCCCAGTTTTTGATAAAGCTACTAATGGAATGggtgagttttgtgttgcatagtatgtattgtggcagtacagtgagagccaa Alignment from Spaln_aa2Genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAG---GAAGCTCTGGTTGACCATGGGGATGTC-TTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaaccaggggtggctacttcacattctttgacttctctctgaaacagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTTGTATTACATGGATATGAGGCAGTGAAGGAGGAAGCTCTTGCTGACCAAGGGGATGTTcTTTGCTGGAAGGGGAAGCCTCCCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagttttgtgttgcatagtatgtattgtggcagtacagtgagagccaa Alignment from Spaln_nt2Genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAA---GGAAGCTCTGGTTGACCATGGGGATG-TCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaaccaggggtggctacttcacattctttgacttctctctgaaacagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTTGTATTACATGGATATGAGGCAGTGAAGGAGGAAGCTCTTGCTGACCAAGGGGATGTTCTTTGCTGGAAGGGGAAGCCTCCCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagttttgtgttgcatagtatgtattgtggcagtacagtgagagccaa Alignment from Pairagon TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGA---AGGAAGCTCTGGTTGACCATGGGGATG-TCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaaccaggggtggctacttcacattctttgacttctctctgaaacagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTTGTATTACATGGATATGAGGCAGTGAAGGAGGAAGCTCTTGCTGACCAAGGGGATGTTCTTTGCTGGAAGGGGAAGCCTCCCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagttttgtgttgcatagtatgtattgtggcagtacagtgagagccaa Alignment from Exonerate_protein2genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAG---GAAGCTCTGGTTGACCATGGGGATGTC-TTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaaccaggggtggctacttcacattctttgacttctctctgaaacagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTTGTATTACATGGATATGAGGCAGTGAAGGAGGAAGCTCTTGCTGACCAAGGGGATGTTCTTTGCTGGAAGGGGAAGCCTCCCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagttttgtgttgcatagtatgtattgtggcagtacagtgagagccaa Alignment from Exonerate_coding2genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAG---GAAGCTCTGGTTGACCATGGGGATGTC-TTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaaccaggggtggctacttcacattctttgacttctctctgaaacagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTTGTATTACATGGATATGAGGCAGTGAAGGAGGAAGCTCTTGCTGACCAAGGGGATGTTCTTTGCTGGAAGGGGAAGCCTCCCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagttttgtgttgcatagtatgtattgtggcagtacagtgagagccaa Alignment from GeneWise TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAG---GAAGCTCTGGTTGACCATGGGGAT-GTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaaccaggggtggctacttcacattctttgacttctctctgaaacagTTATCAAGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTTGTATTACATGGATATGAGGCAGTGAAGGAGGAAGCTCTTGCTGACCAAGGGGATGTTCTTTGCTGGAAGGGGAAGCCTCCCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagttttgtgttgcatagtatgtattgtggcagtacagtgagagccaa #### D19Bwg1357e_ID5846_6 --> 2 - 2 Original Alignment gcGACTTGGTTGAATTAAGTAAAGCCAAATAT-TCCAGGAATATCGTTAAGAAATTTCTCATGTATgg agcactgtagtaaggagcatagtatgcttttttttttttttttcctgtaggtGACTTAGTGGAGTTAAGTAGAGCAAAACATCTCCCAGAATATTGTTAAGAAATTTATTATGTATgggtatgtgcaagagcgatagtgtattgagatgtcccttaaaatgataagtg Alignment from CESAR gcGACTTGGTTGAATTAAGTAAAGCCAAATAT-TCCAGGAATATCGTTAAGAAATTTCTCATGTATgg agcactgtagtaaggagcatagtatgcttttttttttttttttcctgtaggtGACTTAGTGGAGTTAAGTAGAGCAAAACATCTCCCAGAATATTGTTAAGAAATTTATTATGTATgggtatgtgcaagagcgatagtgtattgagatgtcccttaaaatgataagtg Alignment from Spaln_aa2Genome GCGACTTGGTTGAATTAAGTAAAGCCAAATAT-TCCAGGAATATCGTTAAGAAATTTCTCATGTATGG agcactgtagtaaggagcatagtatgcttttttttttttttttcctgtagGTGACTTAGTGGAGTTAAGTAGAGCAAAACATcTCCCAGAATATTGTTAAGAAATTTATTATGTATGGgtatgtgcaagagcgatagtgtattgagatgtcccttaaaatgataagtg Alignment from Spaln_nt2Genome GCGACTTGGTTGAATTAAGTAAAGCCAAATAT-TCCAGGAATATCGTTAAGAAATTTCTCATGTATGG agcactgtagtaaggagcatagtatgcttttttttttttttttcctgtagGTGACTTAGTGGAGTTAAGTAGAGCAAAACATCTCCCAGAATATTGTTAAGAAATTTATTATGTATGGgtatgtgcaagagcgatagtgtattgagatgtcccttaaaatgataagtg Alignment from Pairagon GCGACTTGGTTGAATTAAGTAAAGCCAAATAT-TCCAGGAATATCGTTAAGAAATTTCTCATGTATGG agcactgtagtaaggagcatagtatgcttttttttttttttttcctgtagGTGACTTAGTGGAGTTAAGTAGAGCAAAACATCTCCCAGAATATTGTTAAGAAATTTATTATGTATGGgtatgtgcaagagcgatagtgtattgagatgtcccttaaaatgataagtg Alignment from Exonerate_protein2genome GCGACTTGGTTGAATTAAGTAAAGCCAAATAT-TCCAGGAATATCGTTAAGAAATTTCTCATGTATGG agcactgtagtaaggagcatagtatgcttttttttttttttttcctgtagGTGACTTAGTGGAGTTAAGTAGAGCAAAACATCTCCCAGAATATTGTTAAGAAATTTATTATGTATGGgtatgtgcaagagcgatagtgtattgagatgtcccttaaaatgataagtg Alignment from Exonerate_coding2genome GCGACTTGGTTGAATTAAGTAAAGCCAAATAT-TCCAGGAATATCGTTAAGAAATTTCTCATGTATGG agcactgtagtaaggagcatagtatgcttttttttttttttttcctgtagGTGACTTAGTGGAGTTAAGTAGAGCAAAACATCTCCCAGAATATTGTTAAGAAATTTATTATGTATGGgtatgtgcaagagcgatagtgtattgagatgtcccttaaaatgataagtg Alignment from GeneWise GTAAAGCCAAATATTCCAGGAATATCGTTAAGAAATTTCTCATGTATGG agcactgtagtaaggagcatagtatgcttttttttttttttttcctgtaggtgacttagtggagttaagTAGAGCAAAACATCTCCCAGAATATTGTTAAGAAATTTATTATGTATGGgtatgtgcaagagcgatagtgtattgagatgtcccttaaaatgataagtg #### D19Ertd737e_ID13191_3 --> 2 - 2 Original Alignment gcAAATTGAAGAATGAA-AAGGAATCTCACag aaaacagaatgttaaattaatagtgtgtagctatgccttgtctcttacaggcAAATTGAAAAATGAGCAGAGAATCTCACaggtgagtatatgtgagaaaagttcagcagtgttattggatgttacactact Alignment from CESAR gcAAATTGAAGAATGAAAAG-GAATCTCACag aaaacagaatgttaaattaatagtgtgtagctatgccttgtctcttacaggcAAATTGAAAAATGAGCAGAGAATCTCACaggtgagtatatgtgagaaaagttcagcagtgttattggatgttacactact Alignment from Spaln_aa2Genome GCAAATTGAAGAATGAAAAGGAATCTCACAGTGAG aaaacagaatgttaaattaatagtgtgtagctatgccttgtctcttacagGCAAATTGAAAAATGAGCAGAGAATC---TCACAGgtgagtatatgtgagaaaagttcagcagtgttattggatgttacactact Alignment from Spaln_nt2Genome GCAAATTGAAGAATGAAAAG-GAATCTCACAG aaaacagaatgttaaattaatagtgtgtagctatgccttgtctcttacagGCAAATTGAAAAATGAGCAGAGAATCTCACAGgtgagtatatgtgagaaaagttcagcagtgttattggatgttacactact Alignment from Pairagon GCAAATTGAAGAATGAAAAG-GAATCTCACAG aaaacagaatgttaaattaatagtgtgtagctatgccttgtctcttacagGCAAATTGAAAAATGAGCAGAGAATCTCACAGgtgagtatatgtgagaaaagttcagcagtgttattggatgttacactact Alignment from Exonerate_protein2genome GCAAATTGAAGAATGAA-AAGGAATCTCACAG aaaacagaatgttaaattaatagtgtgtagctatgccttgtctcttacagGCAAATTGAAAAATGAGCAGAGAATCTCACAGgtgagtatatgtgagaaaagttcagcagtgttattggatgttacactact Alignment from Exonerate_coding2genome aaaacagaatgttaaattaatagtgtgtagctatgccttgtctcttacaggcaaattgaaaaatgagcagagaatctcacaggtgagtatatgtgagaaaagttcagcagtgttattggatgttacactact Alignment from GeneWise aaaacagaatgttaaattaatagtgtgtagctatgccttgtctcttacaggcaaattgaaaaatgagcagagaatctcacaggtgagtatatgtgagaaaagttcagcagtgttattggatgttacactact #### D19Ertd737e_ID13192_2 --> 0 - 1 Original Alignment AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAAT-TCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAg tatctcaacttatgcctacatgtacacactgtggattgttctctttaaagAAATTTCAAGAATTACATAAAAAAAATTCCGAACAGAAGAATCTTAACACTAAGATTCAGGCAGAAAAAAAGAAAGCGGTCCAAAAAGggtaagaaatcttaaatcctgaaatctagcttgggatgttggcttacttct Alignment from CESAR AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAAT-TCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAg tatctcaacttatgcctacatgtacacactgtggattgttctctttaaagAAATTTCAAGAATTACATAAAAAAAATTCCGAACAGAAGAATCTTAACACTAAGATTCAGGCAGAAAAAAAGAAAGCGGTCCAAAAAGggtaagaaatcttaaatcctgaaatctagcttgggatgttggcttacttct Alignment from Spaln_aa2Genome AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAATTCA-ACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tatctcaacttatgcctacatgtacacactgtggattgttctctttaaagAAATTTCAAGAATTACATAAAAAAAATTCCGAACAGAAGAATCTTaACACTAAGATTCAGGCAGAAAAAAAGAAAGCGGTCCAAAAAGGgtaagaaatcttaaatcctgaaatctagcttgggatgttggcttacttct Alignment from Spaln_nt2Genome AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAAT-TCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tatctcaacttatgcctacatgtacacactgtggattgttctctttaaagAAATTTCAAGAATTACATAAAAAAAATTCCGAACAGAAGAATCTTAACACTAAGATTCAGGCAGAAAAAAAGAAAGCGGTCCAAAAAGGgtaagaaatcttaaatcctgaaatctagcttgggatgttggcttacttct Alignment from Pairagon AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAAT-TCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tatctcaacttatgcctacatgtacacactgtggattgttctctttaaagAAATTTCAAGAATTACATAAAAAAAATTCCGAACAGAAGAATCTTAACACTAAGATTCAGGCAGAAAAAAAGAAAGCGGTCCAAAAAGGgtaagaaatcttaaatcctgaaatctagcttgggatgttggcttacttct Alignment from Exonerate_protein2genome AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAAT-TCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tatctcaacttatgcctacatgtacacactgtggattgttctctttaaagAAATTTCAAGAATTACATAAAAAAAATTCCGAACAGAAGAATCTTAACACTAAGATTCAGGCAGAAAAAAAGAAAGCGGTCCAAAAAGGgtaagaaatcttaaatcctgaaatctagcttgggatgttggcttacttct Alignment from Exonerate_coding2genome AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAAT-TCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAGGCAAATTGAAGAATGAAAAGGAATCTCAC tatctcaacttatgcctacatgtacacactgtggattgttctctttaaagAAATTTCAAGAATTACATAAAAAAAATTCCGAACAGAAGAATCTTAACACTAAGATTCAGGCAGAAAAAAAGAAAGCGGTCCAAAAAGGGTAAGAAATCTTAAATCCTGAAATCTAGCttgggatgttggcttacttct Alignment from GeneWise AAATTTCAAGAATTGCATAAAAAAAATTCTGAACAGAAAAAT-TCAACGCCAAGATTCAGACAGAAAAAAAGAAAACGCTCCAAAAAAG tatctcaacttatgcctacatgtacacactgtggattgttctctttaaagAAATTTCAAGAATTACATAAAAAAAATTCCGAACAGAAGAATCTTAACACTAAGATTCAGGCAGAAAAAAAGAAAGCGGTCCAAAAAGGgtaagaaatcttaaatcctgaaatctagcttgggatgttggcttacttct #### Dagla_ID2758_12 --> 0 - 0 Original Alignment GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTC-CTGTCCCAGGCCTTTGGGCGAGACCTG cactcttcccctgctggggaggggctaccaatgttgcccttcccttacagGACATGGTACTGACAGCTGAGTACATAAAGAAGAAGCTGGAGCAGGAGATGGTCCTTGTCCCAGGCTTTTGGGCGAGACCTGgtagggtgctaactatattccatactgaagaggttggctggctgaatgca Alignment from CESAR GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTC-CTGTCCCAGGCCTTTGGGCGAGACCTG cactcttcccctgctggggaggggctaccaatgttgcccttcccttacagGACATGGTACTGACAGCTGAGTACATAAAGAAGAAGCTGGAGCAGGAGATGGTCCTTGTCCCAGGCTTTTGGGCGAGACCTGgtagggtgctaactatattccatactgaagaggttggctggctgaatgca Alignment from Spaln_aa2Genome GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTG-TCCCAGGCCTTTGGGCGAGACCTG cactcttcccctgctggggaggggctaccaatgttgcccttcccttacagGACATGGTACTGACAGCTGAGTACATAAAGAAGAAGCTGGAGCAGGAGATGGTCCTTgTCCCAGGCTTTTGGGCGAGACCTGgtagggtgctaactatattccatactgaagaggttggctggctgaatgca Alignment from Spaln_nt2Genome GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTCC-TGTCCCAGGCCTTTGGGCGAGACCTG cactcttcccctgctggggaggggctaccaatgttgcccttcccttacagGACATGGTACTGACAGCTGAGTACATAAAGAAGAAGCTGGAGCAGGAGATGGTCCTTGTCCCAGGCTTTTGGGCGAGACCTGgtagggtgctaactatattccatactgaagaggttggctggctgaatgca Alignment from Pairagon GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTCC-TGTCCCAGGCCTTTGGGCGAGACCTG cactcttcccctgctggggaggggctaccaatgttgcccttcccttacagGACATGGTACTGACAGCTGAGTACATAAAGAAGAAGCTGGAGCAGGAGATGGTCCTTGTCCCAGGCTTTTGGGCGAGACCTGgtagggtgctaactatattccatactgaagaggttggctggctgaatgca Alignment from Exonerate_protein2genome GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTC-CTGTCCCAGGCCTTTGGGCGAGACCTG cactcttcccctgctggggaggggctaccaatgttgcccttcccttacagGACATGGTACTGACAGCTGAGTACATAAAGAAGAAGCTGGAGCAGGAGATGGTCCTTGTCCCAGGCTTTTGGGCGAGACCTGgtagggtgctaactatattccatactgaagaggttggctggctgaatgca Alignment from Exonerate_coding2genome GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTC-CTGTCCCAGGCCTTTGGGCGAGACCTG cactcttcccctgctggggaggggctaccaatgttgcccttcccttacagGACATGGTACTGACAGCTGAGTACATAAAGAAGAAGCTGGAGCAGGAGATGGTCCTTGTCCCAGGCTTTTGGGCGAGACCTGgtagggtgctaactatattccatactgaagaggttggctggctgaatgca Alignment from GeneWise GGCATGGTACTCTCAGCTGAGTACATCAAGAAGAAGTTGGAGCAGGAGATGGTCCTG-TCCCAGGCCTTTGGGCGAGACCTG cactcttcccctgctggggaggggctaccaatgttgcccttcccttacagGACATGGTACTGACAGCTGAGTACATAAAGAAGAAGCTGGAGCAGGAGATGGTCCTTGTCCCAGGCTTTTGGGCGAGACCTGgtagggtgctaactatattccatactgaagaggttggctggctgaatgca #### Dagla_ID2759_11 --> 0 - 0 Original Alignment GATGCCCTGACTGACCTG-ACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG tggtgtacttcttttggtcccccacttactctcatcctgtgtgtctgtagGATGCCTTAACTGACCTGCACAGGTGATGCTGAGCACCTTCCCGCAGAGGCACACAGAGGTGCCTGGTTGGGCCACAAAgtaaagggttcactgaggttcccccatctcactcttcccctgctggggag Alignment from CESAR GATGCCCTGACTGACCTG-ACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG tggtgtacttcttttggtcccccacttactctcatcctgtgtgtctgtagGATGCCTTAACTGACCTGCACAGGTGATGCTGAGCACCTTCCCGCAGAGGCACACAGAGGTGCCTGGTTGGGCCACAAAgtaaagggttcactgaggttcccccatctcactcttcccctgctggggag Alignment from Spaln_aa2Genome GATGCCCTGACTGACCTG-ACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG tggtgtacttcttttggtcccccacttactctcatcctgtgtgtctgtagGATGCCTTAACTGACCTGcACAGGTGATGCTGAGCACCTTCCCGCAGAGGCACACAGAGGTGCCTGGTTGGGCCACAAAgtaaagggttcactgaggttcccccatctcactcttcccctgctggggag Alignment from Spaln_nt2Genome GATGCCCTGACTGACCTG-ACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG tggtgtacttcttttggtcccccacttactctcatcctgtgtgtctgtagGATGCCTTAACTGACCTGCACAGGTGATGCTGAGCACCTTCCCGCAGAGGCACACAGAGGTGCCTGGTTGGGCCACAAAgtaaagggttcactgaggttcccccatctcactcttcccctgctggggag Alignment from Pairagon GATGCCCTGACTGACCTG-ACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG tggtgtacttcttttggtcccccacttactctcatcctgtgtgtctgtagGATGCCTTAACTGACCTGCACAGGTGATGCTGAGCACCTTCCCGCAGAGGCACACAGAGGTGCCTGGTTGGGCCACAAAgtaaagggttcactgaggttcccccatctcactcttcccctgctggggag Alignment from Exonerate_protein2genome tggtgtacttcttttggtcccccacttactctcatcctgtgtgtctgtaggatgccttaactgacctgcacaggtgatgctgagcaccttcccgcagaggcacacagaggtgcctggttgggccacaaagtaaagggttcactgaggttcccccatctcactcttcccctgctggggag Alignment from Exonerate_coding2genome GATGCCCTGACTGACCTG-ACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG tggtgtacttcttttggtcccccacttactctcatcctgtgtgtctgtagGATGCCTTAACTGACCTGCACAGGTGATGCTGAGCACCTTCCCGCAGAGGCACACAGAGGTGCCTGGTTGGGCCACAAAgtaaagggttcactgaggttcccccatctcactcttcccctgctggggag Alignment from GeneWise GATGCCCTGACTGAC-CTGACAGGCGATGCTGAGCGCCTCCCTGTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG tggtgtacttcttttggtcccccacttactctcatcctgtgtgtctgtagGATGCCTTAACTGACCTGCACAGGTGATGCTGAGCACCTTCCCGCAGAGGCACACAGAGGTGCCTGGTTGGGCCACAAAgtaaagggttcactgaggttcccccatctcactcttcccctgctggggag #### Dagla_ID2760_10 --> 0 - 0 Original Alignment GTCTATGAAACTCCC-TTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctgtcaactataatcagaaagtgcatcacctcctctccccccccccgcagGTCTATGAGACTCCCCTTTTATGTAGCTGTTGACCATGATAAGAAGAAAGTGGTGGTCAGCATCCGGGGAACTCTGTCCCCTAAGgtgagtgcgagtgtatccaactttacatactcaagtggttgctgtcttgg Alignment from CESAR GTCTATGAAACTCCC-TTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctgtcaactataatcagaaagtgcatcacctcctctccccccccccgcagGTCTATGAGACTCCCCTTTTATGTAGCTGTTGACCATGATAAGAAGAAAGTGGTGGTCAGCATCCGGGGAACTCTGTCCCCTAAGgtgagtgcgagtgtatccaactttacatactcaagtggttgctgtcttgg Alignment from Spaln_aa2Genome GTCTATGAAACT-CCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctgtcaactataatcagaaagtgcatcacctcctctccccccccccgcagGTCTATGAGACTcCCCTTTTATGTAGCTGTTGACCATGATAAGAAGAAAGTGGTGGTCAGCATCCGGGGAACTCTGTCCCCTAAGgtgagtgcgagtgtatccaactttacatactcaagtggttgctgtcttgg Alignment from Spaln_nt2Genome GTCTATGAAACTCCC-TTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctgtcaactataatcagaaagtgcatcacctcctctccccccccccgcagGTCTATGAGACTCCCCTTTTATGTAGCTGTTGACCATGATAAGAAGAAAGTGGTGGTCAGCATCCGGGGAACTCTGTCCCCTAAGgtgagtgcgagtgtatccaactttacatactcaagtggttgctgtcttgg Alignment from Pairagon GTCTATGAAACT-CCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctgtcaactataatcagaaagtgcatcacctcctctccccccccccgcagGTCTATGAGACTCCCCTTTTATGTAGCTGTTGACCATGATAAGAAGAAAGTGGTGGTCAGCATCCGGGGAACTCTGTCCCCTAAGgtgagtgcgagtgtatccaactttacatactcaagtggttgctgtcttgg Alignment from Exonerate_protein2genome GTCTATGAAACT-CCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctgtcaactataatcagaaagtgcatcacctcctctccccccccccgcagGTCTATGAGACTCCCCTTTTATGTAGCTGTTGACCATGATAAGAAGAAAGTGGTGGTCAGCATCCGGGGAACTCTGTCCCCTAAGgtgagtgcgagtgtatccaactttacatactcaagtggttgctgtcttgg Alignment from Exonerate_coding2genome GTCTATGAAACT-CCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctgtcaactataatcagaaagtgcatcacctcctctccccccccccgcagGTCTATGAGACTCCCCTTTTATGTAGCTGTTGACCATGATAAGAAGAAAGTGGTGGTCAGCATCCGGGGAACTCTGTCCCCTAAGgtgagtgcgagtgtatccaactttacatactcaagtggttgctgtcttgg Alignment from GeneWise GTCTATGAA-ACTCCCTTCTACGTAGCTGTGGACCATGACAAGAAGAAAGTGGTGATCAGTATCCGGGGAACACTGTCCCCCAAG ctgtcaactataatcagaaagtgcatcacctcctctccccccccccgcagGTCTATGAGACTCCCCTTTTATGTAGCTGTTGACCATGATAAGAAGAAAGTGGTGGTCAGCATCCGGGGAACTCTGTCCCCTAAGgtgagtgcgagtgtatccaactttacatactcaagtggttgctgtcttgg #### Dak_ID2902_11 --> 2 - 1 Original Alignment atGCTGAAACTACTGCAAAA-GCCTGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAg cgtatgtctaggccctattgtgtatgaatatgatttacttgtctttctagatGCTGAAACTACTGCAAAACCCTTGGCAT---ATGGCCAAAGTCTCTGTGACTGGGAGGAAACAGATCAGGGCAGCTCCCACAGAGCCCCCAGAGTCCCCTGAAGCCACTGTGGCAGGAggtaagtagtccagttcttggcctaaatactaaggtctatggcagctgaac Alignment from CESAR atGCTGAAACTACTGCAAAAGCC-TGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAg cgtatgtctaggccctattgtgtatgaatatgatttacttgtctttctagatGCTGAAACTACTGCAAAACCCTTGG---CATATGGCCAAAGTCTCTGTGACTGGGAGGAAACAGATCAGGGCAGCTCCCACAGAGCCCCCAGAGTCCCCTGAAGCCACTGTGGCAGGAggtaagtagtccagttcttggcctaaatactaaggtctatggcagctgaac Alignment from Spaln_aa2Genome ATGCTGAAACTACTGCAAAAGCC-TGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAG cgtatgtctaggccctattgtgtatgaatatgatttacttgtctttctagATGCTGAAACTACTGCAAAACCCtTGG---CATATGGCCAAAGTCTCTGTGACTGGGAGGAAACAGATCAGGGCAGCTCCCACAGAGCCCCCAGAGTCCCCTGAAGCCACTGTGGCAGGAGgtaagtagtccagttcttggcctaaatactaaggtctatggcagctgaac Alignment from Spaln_nt2Genome ATGCTGAAACTACTGCAAAAGCCTGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAG cgtatgtctaggccctattgtgtatgaatatgatttacttgtctttctagATGCTGAAACTACTGCAAAACCCTTG--GCATATGGCCAAAGTCTCTGTGACTGGGAGGAAACAGATCAGGGCAGCTCCCACAGAGCCCCCAGAGTCCCCTGAAGCCACTGTGGCAGGAGgtaagtagtccagttcttggcctaaatactaaggtctatggcagctgaac Alignment from Pairagon ATGCTGAAACTACTGCAAAAGCCTGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAG cgtatgtctaggccctattgtgtatgaatatgatttacttgtctttctagATGCTGAAACTACTGCAAAACCCTTGG--CATATGGCCAAAGTCTCTGTGACTGGGAGGAAACAGATCAGGGCAGCTCCCACAGAGCCCCCAGAGTCCCCTGAAGCCACTGTGGCAGGAGgtaagtagtccagttcttggcctaaatactaaggtctatggcagctgaac Alignment from Exonerate_protein2genome ATGCTGAAACTACTGCAAAA-GCCTGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAG cgtatgtctaggccctattgtgtatgaatatgatttacttgtctttctagATGCTGAAACTACTGCAAAACCCTTGG---CATATGGCCAAAGTCTCTGTGACTGGGAGGAAACAGATCAGGGCAGCTCCCACAGAGCCCCCAGAGTCCCCTGAAGCCACTGTGGCAGGAGgtaagtagtccagttcttggcctaaatactaaggtctatggcagctgaac Alignment from Exonerate_coding2genome ATGCTGAAACTACTGCAAAA-GCCTGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAG cgtatgtctaggccctattgtgtatgaatatgatttacttgtctttctagATGCTGAAACTACTGCAAAACCCTTGG---CATATGGCCAAAGTCTCTGTGACTGGGAGGAAACAGATCAGGGCAGCTCCCACAGAGCCCCCAGAGTCCCCTGAAGCCACTGTGGCAGGAGgtaagtagtccagttcttggcctaaatactaaggtctatggcagctgaac Alignment from GeneWise ATGCTGAAACTACTGCAAAA-GCCTGGCCTCACATGGCCAAGGTCTCTGTGACTGGGAGGAAGCGGATTCGGGCAGCTCCCACAGAGCCTCCAGAAGCCCCTGAAGCCACTGCAGCAGGAG cgtatgtctaggccctattgtgtatgaatatgatttacttgtctttctagATGCTGAAACTACTGCAAAACCCTTGG---CATATGGCCAAAGTCTCTGTGACTGGGAGGAAACAGATCAGGGCAGCTCCCACAGAGCCCCCAGAGTCCCCTGAAGCCACTGTGGCAGGAGgtaagtagtccagttcttggcctaaatactaaggtctatggcagctgaac #### Dak_ID2904_9 --> 2 - 1 Original Alignment gcTCTTCAGTGGTGCTG-ATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGg attcctagtcccactcacaaggaggctgtttgtattttctttgtttttaggtTCTTCAGTGGTACTGCATAGTGAATAACCTTGGCGGTCTCTCTTTCCGGGAACTGGGTATCATAACCGATGCTGCCATACGTTTGCTTggtgagaacacttcattggccatccttgtggagaagccctttaaccccttc Alignment from CESAR gcTCTTCAGTGGTGCTG-ATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGg attcctagtcccactcacaaggaggctgtttgtattttctttgtttttaggtTCTTCAGTGGTACTGCATAGTGAATAACCTTGGCGGTCTCTCTTTCCGGGAACTGGGTATCATAACCGATGCTGCCATACGTTTGCTTggtgagaacacttcattggccatccttgtggagaagccctttaaccccttc Alignment from Spaln_aa2Genome GCTCTTCAGTGGTGCTG-ATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG attcctagtcccactcacaaggaggctgtttgtattttctttgtttttagGTTCTTCAGTGGTACTGcATAGTGAATAACCTTGGCGGTCTCTCTTTCCGGGAACTGGGTATCATAACCGATGCTGCCATACGTTTGCTTGgtgagaacacttcattggccatccttgtggagaagccctttaaccccttc Alignment from Spaln_nt2Genome GCTCTTCAGTGGTGCTG-ATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG attcctagtcccactcacaaggaggctgtttgtattttctttgtttttagGTTCTTCAGTGGTACTGCATAGTGAATAACCTTGGCGGTCTCTCTTTCCGGGAACTGGGTATCATAACCGATGCTGCCATACGTTTGCTTGgtgagaacacttcattggccatccttgtggagaagccctttaaccccttc Alignment from Pairagon GCTCTTCAGTGGTGCTG-ATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG attcctagtcccactcacaaggaggctgtttgtattttctttgtttttagGTTCTTCAGTGGTACTGCATAGTGAATAACCTTGGCGGTCTCTCTTTCCGGGAACTGGGTATCATAACCGATGCTGCCATACGTTTGCTTGgtgagaacacttcattggccatccttgtggagaagccctttaaccccttc Alignment from Exonerate_protein2genome GCTCTTCAGTGGTGCTG-ATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG attcctagtcccactcacaaggaggctgtttgtattttctttgtttttagGTTCTTCAGTGGTACTGCATAGTGAATAACCTTGGCGGTCTCTCTTTCCGGGAACTGGGTATCATAACCGATGCTGCCATACGTTTGCTTGgtgagaacacttcattggccatccttgtggagaagccctttaaccccttc Alignment from Exonerate_coding2genome GCTCTTCAGTGGTGCTG-ATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG attcctagtcccactcacaaggaggctgtttgtattttctttgtttttagGTTCTTCAGTGGTACTGCATAGTGAATAACCTTGGCGGTCTCTCTTTCCGGGAACTGGGTATCATAACCGATGCTGCCATACGTTTGCTTGgtgagaacacttcattggccatccttgtggagaagccctttaaccccttc Alignment from GeneWise TGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG attcctagtcccactcacaaggaggctgtttgtattttctttgtttttaggttcttcagtggtactgcatagTG---------AATAACCTTGGCGGTCTCTCTTTCCGGGAACTGGGTATCATAACCGATGCTGCCATACGTTTGCTTGgtgagaacacttcattggccatccttgtggagaagccctttaaccccttc #### Dak_ID2907_6 --> 2 - 1 Original Alignment gtACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGC-GCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGg accatccctttaaattaccaaccatcccgaggtttgtttgttttccataggtACCCTAGGTGTGACCTTGTCATCCTGCAGTGTGCCTGGCCACCACACACACTTTCGAGCTTGCAGCTGATGAAATAGAGTTGGGCTTGggtaagcccactgtcataatgcatcttactttgtgtctgatgttatttagt Alignment from CESAR gtACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGC-GCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGg accatccctttaaattaccaaccatcccgaggtttgtttgttttccataggtACCCTAGGTGTGACCTTGTCATCCTGCAGTGTGCCTGGCCACCACACACACTTTCGAGCTTGCAGCTGATGAAATAGAGTTGGGCTTGggtaagcccactgtcataatgcatcttactttgtgtctgatgttatttagt Alignment from Spaln_aa2Genome GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGC-GCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG accatccctttaaattaccaaccatcccgaggtttgtttgttttccatagGTACCCTAGGTGTGACCTTGTCATCCTGCAGTGTGCCTGGCcACCACACACACTTTCGAGCTTGCAGCTGATGAAATAGAGTTGGGCTTGGgtaagcccactgtcataatgcatcttactttgtgtctgatgttatttagt Alignment from Spaln_nt2Genome GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGCG-CCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG accatccctttaaattaccaaccatcccgaggtttgtttgttttccatagGTACCCTAGGTGTGACCTTGTCATCCTGCAGTGTGCCTGGCCACCACACACACTTTCGAGCTTGCAGCTGATGAAATAGAGTTGGGCTTGGgtaagcccactgtcataatgcatcttactttgtgtctgatgttatttagt Alignment from Pairagon GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGG-CGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG accatccctttaaattaccaaccatcccgaggtttgtttgttttccatagGTACCCTAGGTGTGACCTTGTCATCCTGCAGTGTGCCTGGCCACCACACACACTTTCGAGCTTGCAGCTGATGAAATAGAGTTGGGCTTGGgtaagcccactgtcataatgcatcttactttgtgtctgatgttatttagt Alignment from Exonerate_protein2genome GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGC-GCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG accatccctttaaattaccaaccatcccgaggtttgtttgttttccatagGTACCCTAGGTGTGACCTTGTCATCCTGCAGTGTGCCTGGCCACCACACACACTTTCGAGCTTGCAGCTGATGAAATAGAGTTGGGCTTGGgtaagcccactgtcataatgcatcttactttgtgtctgatgttatttagt Alignment from Exonerate_coding2genome GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGC-GCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG accatccctttaaattaccaaccatcccgaggtttgtttgttttccatagGTACCCTAGGTGTGACCTTGTCATCCTGCAGTGTGCCTGGCCACCACACACACTTTCGAGCTTGCAGCTGATGAAATAGAGTTGGGCTTGGgtaagcccactgtcataatgcatcttactttgtgtctgatgttatttagt Alignment from GeneWise GTACCCTAGGGGTGAGCTTGTCATCCTGCAGTGTCCCTGGC-GCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG accatccctttaaattaccaaccatcccgaggtttgtttgttttccatagGTACCCTAGGTGTGACCTTGTCATCCTGCAGTGTGCCTGGCCACCACACACACTTTCGAGCTTGCAGCTGATGAAATAGAGTTGGGCTTGGgtaagcccactgtcataatgcatcttactttgtgtctgatgttatttagt #### Ddb1_ID2932_17 --> 1 - 2 Original Alignment tCTGGCATTGGCCAAT-AACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCag tgctgtagcaacaatcggaccctaaaatttatttccatctgactttgcagtCTGGCATTGGCCAATCAACAGTACTCTCACAATTGGTACCATCGATGAAATGCAGAAGCTCCACATTCGCACAGTCCCCCTCTATGAGTCTCCTaggtgagattagacctgagaagcagaagagggggagggttagtgaaggtatc Alignment from CESAR tCTGGCATTGGCCAAT-AACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCag tgctgtagcaacaatcggaccctaaaatttatttccatctgactttgcagtCTGGCATTGGCCAATCAACAGTACTCTCACAATTGGTACCATCGATGAAATGCAGAAGCTCCACATTCGCACAGTCCCCCTCTATGAGTCTCCTaggtgagattagacctgagaagcagaagagggggagggttagtgaaggtatc Alignment from Spaln_aa2Genome TCTGGCATTGGCCAAT-AACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tgctgtagcaacaatcggaccctaaaatttatttccatctgactttgcagTCTGGCATTGGCCAATcAACAGTACTCTCACAATTGGTACCATCGATGAAATGCAGAAGCTCCACATTCGCACAGTCCCCCTCTATGAGTCTCCTAGgtgagattagacctgagaagcagaagagggggagggttagtgaaggtatc Alignment from Spaln_nt2Genome TCTGGCATTGGCCAAT-AACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tgctgtagcaacaatcggaccctaaaatttatttccatctgactttgcagTCTGGCATTGGCCAATCAACAGTACTCTCACAATTGGTACCATCGATGAAATGCAGAAGCTCCACATTCGCACAGTCCCCCTCTATGAGTCTCCTAGgtgagattagacctgagaagcagaagagggggagggttagtgaaggtatc Alignment from Pairagon TCTGGCATTGGCCAAT-AACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tgctgtagcaacaatcggaccctaaaatttatttccatctgactttgcagTCTGGCATTGGCCAATCAACAGTACTCTCACAATTGGTACCATCGATGAAATGCAGAAGCTCCACATTCGCACAGTCCCCCTCTATGAGTCTCCTAGgtgagattagacctgagaagcagaagagggggagggttagtgaaggtatc Alignment from Exonerate_protein2genome TCTGGCATTGGCCAAT-AACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tgctgtagcaacaatcggaccctaaaatttatttccatctgactttgcagTCTGGCATTGGCCAATCAACAGTACTCTCACAATTGGTACCATCGATGAAATGCAGAAGCTCCACATTCGCACAGTCCCCCTCTATGAGTCTCCTAGgtgagattagacctgagaagcagaagagggggagggttagtgaaggtatc Alignment from Exonerate_coding2genome TCTGGCATTGGCCAAT-AACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tgctgtagcaacaatcggaccctaaaatttatttccatctgactttgcagTCTGGCATTGGCCAATCAACAGTACTCTCACAATTGGTACCATCGATGAAATGCAGAAGCTCCACATTCGCACAGTCCCCCTCTATGAGTCTCCTAGgtgagattagacctgagaagcagaagagggggagggttagtgaaggtatc Alignment from GeneWise TCTGGCATTGGCCAAT-AACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAGCTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tgctgtagcaacaatcggaccctaaaatttatttccatctgactttgcagTCTGGCATTGGCCAATCAACAGTACTCTCACAATTGGTACCATCGATGAAATGCAGAAGCTCCACATTCGCACAGTCCCCCTCTATGAGTCTCCTAGgtgagattagacctgagaagcagaagagggggagggttagtgaaggtatc #### Ddb1_ID2939_24 --> 1 - 1 Original Alignment tGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAG-TTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAg agagcctactagggagaactgttctggagtttcttgttttcttcctgcagtGCTGCAACCACTGTCGAGGAACGGCAGCATTTACAGGAGATAGGTCTCTTCCACCTAGGTGAGCTTTGTCAATGTGTTCTGCCACGGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACGCAGGGATCGGTGCTTTTTGGCACAGTCAATGTCATGATAggtatgtgctcaagctcttatgccagggcttgcttatgccagggcttgtac Alignment from CESAR tGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAG-TTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAg agagcctactagggagaactgttctggagtttcttgttttcttcctgcagtGCTGCAACCACTGTCGAGGAACGGCAGCATTTACAGGAGATAGGTCTCTTCCACCTAGGTGAGCTTTGTCAATGTGTTCTGCCACGGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACGCAGGGATCGGTGCTTTTTGGCACAGTCAATGTCATGATAggtatgtgctcaagctcttatgccagggcttgcttatgccagggcttgtac Alignment from Spaln_aa2Genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAG-TTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCT---ACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG agagcctactagggagaactgttctggagtttcttgttttcttcctgcagTGCTGCAACCACTGTCGAGGAACGGCAGCATTTACAGGAGATAGGTCTCTTCCACCTAGGTGAGcTTTGTCAATGTGTTCTGCCACGGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACGCAGGGATCGGTGCTTTTTGGCACAGTCAATGTCATGATAGgtatgtgctcaagctcttatgccagggcttgcttatgccagggcttgtac Alignment from Spaln_nt2Genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAG-TTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG agagcctactagggagaactgttctggagtttcttgttttcttcctgcagTGCTGCAACCACTGTCGAGGAACGGCAGCATTTACAGGAGATAGGTCTCTTCCACCTAGGTGAGCTTTGTCAATGTGTTCTGCCACGGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACGCAGGGATCGGTGCTTTTTGGCACAGTCAATGTCATGATAGgtatgtgctcaagctcttatgccagggcttgcttatgccagggcttgtac Alignment from Pairagon TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAG-TTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG agagcctactagggagaactgttctggagtttcttgttttcttcctgcagTGCTGCAACCACTGTCGAGGAACGGCAGCATTTACAGGAGATAGGTCTCTTCCACCTAGGTGAGCTTTGTCAATGTGTTCTGCCACGGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACGCAGGGATCGGTGCTTTTTGGCACAGTCAATGTCATGATAGgtatgtgctcaagctcttatgccagggcttgcttatgccagggcttgtac Alignment from Exonerate_protein2genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAG-TTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCT---ACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG agagcctactagggagaactgttctggagtttcttgttttcttcctgcagTGCTGCAACCACTGTCGAGGAACGGCAGCATTTACAGGAGATAGGTCTCTTCCACCTAGGTGAGCTTTGTCAATGTGTTCTGCCACGGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACGCAGGGATCGGTGCTTTTTGGCACAGTCAATGTCATGATAGgtatgtgctcaagctcttatgccagggcttgcttatgccagggcttgtac Alignment from Exonerate_coding2genome TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGCGAG-TTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCT---ACACAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG agagcctactagggagaactgttctggagtttcttgttttcttcctgcagTGCTGCAACCACTGTCGAGGAACGGCAGCATTTACAGGAGATAGGTCTCTTCCACCTAGGTGAGCTTTGTCAATGTGTTCTGCCACGGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACGCAGGGATCGGTGCTTTTTGGCACAGTCAATGTCATGATAGgtatgtgctcaagctcttatgccagggcttgcttatgccagggcttgtac Alignment from GeneWise TGCTGCCACCACTGATGAGGAGCGGCAGCACCTACAGGAGGTTGGTCTCTTCCACCTGGGC-GAGTTTGTCAATGTGTTCTGCCATGGCTCCCTAGTTATGCAGAATCTGGGCGAGGCTTCTACCCCTACA---CAGGGCTCGGTGCTCTTTGGCACAGTCAACGGCATGATAG agagcctactagggagaactgttctggagtttcttgttttcttcctgcagTGCTGCAACCACTGTCGAGGAACGGCAGCATTTACAGGAGATAGGTCTCTTCCACCTAGGTGAGCTTTGTCAATGTGTTCTGCCACGGCTCTCTAGTTATGAAGAATCTGGGTGAGGCTTCCACTCCTACAACGCAGGGATCGGTGCTTTTTGGCACAGTCAATGTCATGATAGgtatgtgctcaagctcttatgccagggcttgcttatgccagggcttgtac #### Dkk1_ID6482_3 --> 2 - 1 Original Alignment gaATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTG-ACTTCAAAAATATATCACACCAAAg tcaaaggggcagtgaagcaactccctgcgaaatgctgtcttctctttcaggaATATGCATGCCCTCTGAGCATAGCCACTTCCCACGCGGGGAAGTTGAAGAAAGAACTATCGAAACCCTCGGTAATGACCACAACGCTGCTGCAGGGGATGGATTTCCCAGAAGAACTACATTGCGCCTCAAAGATTTATCATACTAAAggtgcgtaagtaacttaagaacttcacatttaatttacaaaaaccactgag Alignment from CESAR gaATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTG-ACTTCAAAAATATATCACACCAAAg tcaaaggggcagtgaagcaactccctgcgaaatgctgtcttctctttcaggaATATGCATGCCCTCTGAGCATAGCCACTTCCCACGCGGGGAAGTTGAAGAAAGAACTATCGAAACCCTCGGTAATGACCACAACGCTGCTGCAGGGGATGGATTTCCCAGAAGAACTACATTGCGCCTCAAAGATTTATCATACTAAAggtgcgtaagtaacttaagaacttcacatttaatttacaaaaaccactgag Alignment from Spaln_aa2Genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTG-ACTTCAAAAATATATCACACCAAAG tcaaaggggcagtgaagcaactccctgcgaaatgctgtcttctctttcagGAATATGCATGCCCTCTGAGCATAGCCACTTCCCACGCGGGGAAGTTGAAGAAAGAACTATCGAAACCCTCGGTAATGACCACAACGCTGCTGCAGGGGATGGATTTCCCAGAAGAACTACATTGcGCCTCAAAGATTTATCATACTAAAGgtgcgtaagtaacttaagaacttcacatttaatttacaaaaaccactgag Alignment from Spaln_nt2Genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGA-CTTCAAAAATATATCACACCAAAG tcaaaggggcagtgaagcaactccctgcgaaatgctgtcttctctttcagGAATATGCATGCCCTCTGAGCATAGCCACTTCCCACGCGGGGAAGTTGAAGAAAGAACTATCGAAACCCTCGGTAATGACCACAACGCTGCTGCAGGGGATGGATTTCCCAGAAGAACTACATTGCGCCTCAAAGATTTATCATACTAAAGgtgcgtaagtaacttaagaacttcacatttaatttacaaaaaccactgag Alignment from Pairagon GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTG-ACTTCAAAAATATATCACACCAAAG tcaaaggggcagtgaagcaactccctgcgaaatgctgtcttctctttcagGAATATGCATGCCCTCTGAGCATAGCCACTTCCCACGCGGGGAAGTTGAAGAAAGAACTATCGAAACCCTCGGTAATGACCACAACGCTGCTGCAGGGGATGGATTTCCCAGAAGAACTACATTGCGCCTCAAAGATTTATCATACTAAAGgtgcgtaagtaacttaagaacttcacatttaatttacaaaaaccactgag Alignment from Exonerate_protein2genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTG-ACTTCAAAAATATATCACACCAAAG tcaaaggggcagtgaagcaactccctgcgaaatgctgtcttctctttcagGAATATGCATGCCCTCTGAGCATAGCCACTTCCCACGCGGGGAAGTTGAAGAAAGAACTATCGAAACCCTCGGTAATGACCACAACGCTGCTGCAGGGGATGGATTTCCCAGAAGAACTACATTGCGCCTCAAAGATTTATCATACTAAAGgtgcgtaagtaacttaagaacttcacatttaatttacaaaaaccactgag Alignment from Exonerate_coding2genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTG-ACTTCAAAAATATATCACACCAAAG tcaaaggggcagtgaagcaactccctgcgaaatgctgtcttctctttcagGAATATGCATGCCCTCTGAGCATAGCCACTTCCCACGCGGGGAAGTTGAAGAAAGAACTATCGAAACCCTCGGTAATGACCACAACGCTGCTGCAGGGGATGGATTTCCCAGAAGAACTACATTGCGCCTCAAAGATTTATCATACTAAAGgtgcgtaagtaacttaagaacttcacatttaatttacaaaaaccactgag Alignment from GeneWise GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTG-ACTTCAAAAATATATCACACCAAAG tcaaaggggcagtgaagcaactccctgcgaaatgctgtcttctctttcagGAATATGCATGCCCTCTGAGCATAGCCACTTCCCACGCGGGGAAGTTGAAGAAAGAACTATCGAAACCCTCGGTAATGACCACAACGCTGCTGCAGGGGATGGATTTCCCAGAAGAACTACATTGCGCCTCAAAGATTTATCATACTAAAGgtgcgtaagtaacttaagaacttcacatttaatttacaaaaaccactgag #### Dkk1_ID6483_2 --> 0 - 1 Original Alignment CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGC-CGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATg aaggttggcaactagcctgatcaaggtgtttgttcgattttgccatgcagCCCTTCCCTTGTGTTGTAGATGAGGAGTGTGGTTCTGATAAATACTGTTCCAGCCCCAGCCTGTGGAGCAGCT---GTTGAAGGTGTTCAGATCTGCTTGGCTTGCCGAAAGCATAGGAAGTGTTGTGTAAGGCATACTATGTGCTGCCCTGGGAACCACTGCAAAAACcgtaagtatgccccagtacctgtcttctacttaccgagttctacttggcaa Alignment from CESAR CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGC-GGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATg aaggttggcaactagcctgatcaaggtgtttgttcgattttgccatgcagCCCTTCCCTTGTGTTGTAGATGAGGAGTGTGGTTCTGATAAATACTGTTCCAGCCCCAGCCTGTGGAGCAGCT---GTTGAAGGTGTTCAGATCTGCTTGGCTTGCCGAAAGCATAGGAAGTGTTGTGTAAGGCATACTATGTGCTGCCCTGGGAACCACTGCAAAAACcgtaagtatgccccagtacctgtcttctacttaccgagttctacttggcaa Alignment from Spaln_aa2Genome CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATG aaggttggcaactagcctgatcaaggtgtttgttcgattttgccatgcagCCCTTCCCTTGTGTTGTAGATGAGGAGTGTGGTTCTGATAAATACTGTTCCAGCCCCAGCC--TGTGGAGCAGCTGTTGAAGGTGTTCAGATCTGCTTGGCTTGCCGAAAGCATAGGAAGTGTTGTGTAAGGCATACTATGTGCTGCCCTGGGAACCACTGCAAAAACCgtaagtatgccccagtacctgtcttctacttaccgagttctacttggcaa Alignment from Spaln_nt2Genome CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATG aaggttggcaactagcctgatcaaggtgtttgttcgattttgccatgcagCCCTTCCCTTGTGTTGTAGATGAGGAGTGTGGTTCTGATAAATACTGTTCCAGCCCCAGC--CTGTGGAGCAGCTGTTGAAGGTGTTCAGATCTGCTTGGCTTGCCGAAAGCATAGGAAGTGTTGTGTAAGGCATACTATGTGCTGCCCTGGGAACCACTGCAAAAACCgtaagtatgccccagtacctgtcttctacttaccgagttctacttggcaa Alignment from Pairagon CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCC-GCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATG aaggttggcaactagcctgatcaaggtgtttgttcgattttgccatgcagCCCTTCCCTTGTGTTGTAGATGAGGAGTGTGGTTCTGATAAATACTGTTCCAGCCCCAGCCTGTGGAGCAGC---TGTTGAAGGTGTTCAGATCTGCTTGGCTTGCCGAAAGCATAGGAAGTGTTGTGTAAGGCATACTATGTGCTGCCCTGGGAACCACTGCAAAAACCgtaagtatgccccagtacctgtcttctacttaccgagttctacttggcaa Alignment from Exonerate_protein2genome CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGC-GGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATG aaggttggcaactagcctgatcaaggtgtttgttcgattttgccatgcagCCCTTCCCTTGTGTTGTAGATGAGGAGTGTGGTTCTGATAAATACTGTTCCAGCCCCAGCCTGTGGAGCAGCT---GTTGAAGGTGTTCAGATCTGCTTGGCTTGCCGAAAGCATAGGAAGTGTTGTGTAAGGCATACTATGTGCTGCCCTGGGAACCACTGCAAAAACCgtaagtatgccccagtacctgtcttctacttaccgagttctacttggcaa Alignment from Exonerate_coding2genome CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGCCGC-GGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATG aaggttggcaactagcctgatcaaggtgtttgttcgattttgccatgcagCCCTTCCCTTGTGTTGTAGATGAGGAGTGTGGTTCTGATAAATACTGTTCCAGCCCCAGCCTGTGGAGCAGCT---GTTGAAGGTGTTCAGATCTGCTTGGCTTGCCGAAAGCATAGGAAGTGTTGTGTAAGGCATACTATGTGCTGCCCTGGGAACCACTGCAAAAACCgtaagtatgccccagtacctgtcttctacttaccgagttctacttggcaa Alignment from GeneWise CCCTACCCTTGCGCTGAAGATGAGGAGTGCGGCTCTGACGAGTACTGCTCCAGCCCCAGC-CGCGGGGCAGCCGGCGTCGGAGGTGTACAGATCTGTCTGGCTTGCCGAAAGCGCAGGAAGCGCTGCATGAGGCACGCTATGTGCTGCCCCGGGAACTACTGCAAAAATG aaggttggcaactagcctgatcaaggtgtttgttcgattttgccatgcagCCCTTCCCTTGTGTTGTAGATGAGGAGTGTGGTTCTGATAAATACTGTTCCAGCCCCAGCCTGTGGAGCAGCT---GTTGAAGGTGTTCAGATCTGCTTGGCTTGCCGAAAGCATAGGAAGTGTTGTGTAAGGCATACTATGTGCTGCCCTGGGAACCACTGCAAAAACCgtaagtatgccccagtacctgtcttctacttaccgagttctacttggcaa #### Dnajc4_ID1965_3 --> 0 - 2 Original Alignment CTACACCCTGATCGAGACCCTGGGAACCCAGCCCTGCATAGCCGCTTTGTGGAGCTGAATGAGGCATATCGAGTGCTCAGTCGTGAGGAAAGTCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCAAAGTCTTCAGGGAGCACAGCCGAGCCTAAGTAT-ACGCAACAGACACACag tctgcatctgcgtccatttgagtcacattgtttcattcttgtgtttttagCTGCGCCCTGATCGGGACTTGGGTAATCCAGCCCTGCATAGCCGCTTCGTGGAACTGAACGAG------CGTGTCCTCAGCCATGAAGAAAGCCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCCAAGTCTTCTGGGAGCACTGCTGAGCCTAAGTATCAAACAACACACCCACaggtaacctacaaaaggcacgacatgagtttgccctcaactaggtagtaggc Alignment from CESAR CTACACCCTGATCGAGACCCTGGGAACCCAGCCCTGCATAGCCGCTTTGTGGAGCTGAATGAGGCATATCGAGTGCTCAGTCGTGAGGAAAGTCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCAAAGTCTTCAGGGAGCACAGCCGAGCCTAAGTAT-ACGCAACAGACACACag tctgcatctgcgtccatttgagtcacattgtttcattcttgtgtttttagCTGCGCCCTGATCGGGACTTGGGTAATCCAGCCCTGCATAGCCGCTTCGTGGAACTGAACGAG------CGTGTCCTCAGCCATGAAGAAAGCCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCCAAGTCTTCTGGGAGCACTGCTGAGCCTAAGTATCAAACAACACACCCACaggtaacctacaaaaggcacgacatgagtttgccctcaactaggtagtaggc Alignment from Spaln_aa2Genome CTACACCCTGATCGAGACCCTGGGAACCCAGCCCTGCATAGCCGCTTTGTGGAGCTGAATGAGGCATATCGAGTGCTCAGTCGTGAGGAAAGTCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCAAAGTCTTCAGGGAGCACAGCCGAGCCTAAGTAT-ACGCAACAGACACACAG tctgcatctgcgtccatttgagtcacattgtttcattcttgtgtttttagCTGCGCCCTGATCGGGACTTGGGTAATCCAGCCCTGCATAGCCGCTTCGTGGAACTGAACGAG------CGTGTCCTCAGCCATGAAGAAAGCCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCCAAGTCTTCTGGGAGCACTGCTGAGCCTAAGTATcAAACAACACACCCACAGgtaacctacaaaaggcacgacatgagtttgccctcaactaggtagtaggc Alignment from Spaln_nt2Genome CTACACCCTGATCGAGACCCTGGGAACCCAGCCCTGCATAGCCGCTTTGTGGAGCTGAATGAGGCATATCGAGTGCTCAGTCGTGAGGAAAGTCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCAAAGTCTTCAGGGAGCACAGCCGAGCCTAAGTAT-ACGCAACAGACACACAG tctgcatctgcgtccatttgagtcacattgtttcattcttgtgtttttagCTGCGCCCTGATCGGGACTTGGGTAATCCAGCCCTGCATAGCCGCTTCGTGGAACTGAACGAG------CGTGTCCTCAGCCATGAAGAAAGCCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCCAAGTCTTCTGGGAGCACTGCTGAGCCTAAGTATCAAACAACACACCCACAGgtaacctacaaaaggcacgacatgagtttgccctcaactaggtagtaggc Alignment from Pairagon CTACACCCTGATCGAGACCCTGGGAACCCAGCCCTGCATAGCCGCTTTGTGGAGCTGAATGAGGCATATCGAGTGCTCAGTCGTGAGGAAAGTCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCAAAGTCTTCAGGGAGCACAGCCGAGCCTAAGTAT-ACGCAACAGACACACAG tctgcatctgcgtccatttgagtcacattgtttcattcttgtgtttttagCTGCGCCCTGATCGGGACTTGGGTAATCCAGCCCTGCATAGCCGCTTCGTGGAACTGAACGAG------CGTGTCCTCAGCCATGAAGAAAGCCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCCAAGTCTTCTGGGAGCACTGCTGAGCCTAAGTATCAAACAACACACCCACAGgtaacctacaaaaggcacgacatgagtttgccctcaactaggtagtaggc Alignment from Exonerate_protein2genome CTACACCCTGATCGAGACCCTGGGAACCCAGCCCTGCATAGCCGCTTTGTGGAGCTGAATGAGGCATATCGAGTGCTCAGTCGTGAGGAAAGTCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCAAAGTCTTCAGGGAGCACAGCCGAGCCTAAGTAT-ACGCAACAGACACACAG tctgcatctgcgtccatttgagtcacattgtttcattcttgtgtttttagCTGCGCCCTGATCGGGACTTGGGTAATCCAGCCCTGCATAGCCGCTTCGTGGAACTGAACGAG------CGTGTCCTCAGCCATGAAGAAAGCCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCCAAGTCTTCTGGGAGCACTGCTGAGCCTAAGTATCAAACAACACACCCACAGgtaacctacaaaaggcacgacatgagtttgccctcaactaggtagtaggc Alignment from Exonerate_coding2genome CTACACCCTGATCGAGACCCTGGGAACCCAGCCCTGCATAGCCGCTTTGTGGAGCTGAATGAGGCATATCGAGTGCTCAGTCGTGAGGAAAGTCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCAAAGTCTTCAGGGAGCACAGCCGAGCCTAAGTAT-ACGCAACAGACACACAG tctgcatctgcgtccatttgagtcacattgtttcattcttgtgtttttagCTGCGCCCTGATCGGGACTTGGGTAATCCAGCCCTGCATAGCCGCTTCGTGGAACTGAACGAG------CGTGTCCTCAGCCATGAAGAAAGCCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCCAAGTCTTCTGGGAGCACTGCTGAGCCTAAGTATCAAACAACACACCCACAGgtaacctacaaaaggcacgacatgagtttgccctcaactaggtagtaggc Alignment from GeneWise CTACACCCTGATCGAGACCCTGGGAACCCAGCCCTGCATAGCCGCTTTGTGGAGCTGAATGAGGCATATCGAGTGCTCAGTCGTGAGGAAAGTCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCAAAGTCTTCAGGGAGCACAGCCGAGCCTAAGTAT-ACGCAACAGACACACAG tctgcatctgcgtccatttgagtcacattgtttcattcttgtgtttttagCTGCGCCCTGATCGGGACTTGGGTAATCCAGCCCTGCATAGCCGCTTCGTGGAACTGAACGAG------CGTGTCCTCAGCCATGAAGAAAGCCGTCGTAACTATGACCACCAGCTGCATTCAGCCAGTCCTCCCAAGTCTTCTGGGAGCACTGCTGAGCCTAAGTATCAAACAACACACCCACAGgtaacctacaaaaggcacgacatgagtttgccctcaactaggtagtaggc #### Dock8_ID5413_32 --> 0 - 1 Original Alignment GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAA-GGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAg gtttgctgagtcctagtaaactaaatgtagtcatttccttctctttgtagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAACGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAggtgagagttcattccaacactataaccccaagttattcaaggctactgca Alignment from CESAR GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAA-GGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAg gtttgctgagtcctagtaaactaaatgtagtcatttccttctctttgtagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAACGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAggtgagagttcattccaacactataaccccaagttattcaaggctactgca Alignment from Spaln_aa2Genome GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAA-GGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagtcctagtaaactaaatgtagtcatttccttctctttgtagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAAcGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAGgtgagagttcattccaacactataaccccaagttattcaaggctactgca Alignment from Spaln_nt2Genome GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGT-GGGGAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagtcctagtaaactaaatgtagtcatttccttctctttgtagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAACGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAGgtgagagttcattccaacactataaccccaagttattcaaggctactgca Alignment from Pairagon GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAA-GGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagtcctagtaaactaaatgtagtcatttccttctctttgtagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAACGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAGgtgagagttcattccaacactataaccccaagttattcaaggctactgca Alignment from Exonerate_protein2genome GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAA-GGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagtcctagtaaactaaatgtagtcatttccttctctttgtagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAACGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAGgtgagagttcattccaacactataaccccaagttattcaaggctactgca Alignment from Exonerate_coding2genome GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAA-GGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagtcctagtaaactaaatgtagtcatttccttctctttgtagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAACGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAGgtgagagttcattccaacactataaccccaagttattcaaggctactgca Alignment from GeneWise GGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGG-GAAGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAG gtttgctgagtcctagtaaactaaatgtagtcatttccttctctttgtagGGAAAGCAGAGTTCTGACAAAGTCAGTAACCAGGTCCTGCAGAAGTCAAGAGACGTCAAGGCCAAGCTGGAAGAGGCCCTGCTCCGTGGGGAACGGAGCCCGTGGGGAGATGATGCGCCGTCGCATTCCAGgtgagagttcattccaacactataaccccaagttattcaaggctactgca #### Dpp3_ID741_12 --> 0 - 0 Original Alignment GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAAC-CCAGAGACTGGGGAACAG agtgctgggaggccctgataagcatgggttttgattcccccaaaatgtagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGGTGATCAACCCCAGAGACTGGGGAGCAGgtgagtaatacactatggggtgagggaattgcaatgagggagacagctaa Alignment from CESAR GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAAC-CCAGAGACTGGGGAACAG agtgctgggaggccctgataagcatgggttttgattcccccaaaatgtagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGGTGATCAACCCCAGAGACTGGGGAGCAGgtgagtaatacactatggggtgagggaattgcaatgagggagacagctaa Alignment from Spaln_aa2Genome GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAAC-CCAGAGACTGGGGAACAG agtgctgggaggccctgataagcatgggttttgattcccccaaaatgtagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGGTGATCAACcCCAGAGACTGGGGAGCAGgtgagtaatacactatggggtgagggaattgcaatgagggagacagctaa Alignment from Spaln_nt2Genome GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCC-AGAGACTGGGGAACAG agtgctgggaggccctgataagcatgggttttgattcccccaaaatgtagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGGTGATCAACCCCAGAGACTGGGGAGCAGgtgagtaatacactatggggtgagggaattgcaatgagggagacagctaa Alignment from Pairagon GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAA-CCCAGAGACTGGGGAACAG agtgctgggaggccctgataagcatgggttttgattcccccaaaatgtagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGGTGATCAACCCCAGAGACTGGGGAGCAGgtgagtaatacactatggggtgagggaattgcaatgagggagacagctaa Alignment from Exonerate_protein2genome GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAAC-CCAGAGACTGGGGAACAG agtgctgggaggccctgataagcatgggttttgattcccccaaaatgtagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGGTGATCAACCCCAGAGACTGGGGAGCAGgtgagtaatacactatggggtgagggaattgcaatgagggagacagctaa Alignment from Exonerate_coding2genome GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAAC-CCAGAGACTGGGGAACAG agtgctgggaggccctgataagcatgggttttgattcccccaaaatgtagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGGTGATCAACCCCAGAGACTGGGGAGCAGgtgagtaatacactatggggtgagggaattgcaatgagggagacagctaa Alignment from GeneWise GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCA-GAGACTGGGGAACAG agtgctgggaggccctgataagcatgggttttgattcccccaaaatgtagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGGTGATCAACCCCAGAGACTGGGGAGCAGgtgagtaatacactatggggtgagggaattgcaatgagggagacagctaa #### Dpp3_ID743_10 --> 2 - 0 Original Alignment acGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTC-TTGGAGGAGGAAGACAAG ccttcagtaccaatccagtctacttctgaagtgcctttttgccttttcagacGATGATCTGAGACAAACAGAAGGCTTTAAGAACGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACATTCCTTGGAGGAGGAAGACAAGgtaagaatggccccccaagcttagggcttagctgttctagtcttggagaa Alignment from CESAR acGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTC-TTGGAGGAGGAAGACAAG ccttcagtaccaatccagtctacttctgaagtgcctttttgccttttcagacGATGATCTGAGACAAACAGAAGGCTTTAAGAACGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACATTCCTTGGAGGAGGAAGACAAGgtaagaatggccccccaagcttagggcttagctgttctagtcttggagaa Alignment from Spaln_aa2Genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTC-TTGGAGGAGGAAGACAAG ccttcagtaccaatccagtctacttctgaagtgcctttttgccttttcagACGATGATCTGAGACAAACAGAAGGCTTTAAGAACGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACATTCcTTGGAGGAGGAAGACAAGgtaagaatggccccccaagcttagggcttagctgttctagtcttggagaa Alignment from Spaln_nt2Genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTT-CTTGGAGGAGGAAGACAAG ccttcagtaccaatccagtctacttctgaagtgcctttttgccttttcagACGATGATCTGAGACAAACAGAAGGCTTTAAGAACGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACATTCCTTGGAGGAGGAAGACAAGgtaagaatggccccccaagcttagggcttagctgttctagtcttggagaa Alignment from Pairagon ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTT-CTTGGAGGAGGAAGACAAG ccttcagtaccaatccagtctacttctgaagtgcctttttgccttttcagACGATGATCTGAGACAAACAGAAGGCTTTAAGAACGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACATTCCTTGGAGGAGGAAGACAAGgtaagaatggccccccaagcttagggcttagctgttctagtcttggagaa Alignment from Exonerate_protein2genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTC-TTGGAGGAGGAAGACAAG ccttcagtaccaatccagtctacttctgaagtgcctttttgccttttcagACGATGATCTGAGACAAACAGAAGGCTTTAAGAACGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACATTCCTTGGAGGAGGAAGACAAGgtaagaatggccccccaagcttagggcttagctgttctagtcttggagaa Alignment from Exonerate_coding2genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTC-TTGGAGGAGGAAGACAAG ccttcagtaccaatccagtctacttctgaagtgcctttttgccttttcagACGATGATCTGAGACAAACAGAAGGCTTTAAGAACGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACATTCCTTGGAGGAGGAAGACAAGgtaagaatggccccccaagcttagggcttagctgttctagtcttggagaa Alignment from GeneWise ACGATGACCTGAGACAGACAGAAGGCTTTAAGAATGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTC-TTGGAGGAGGAAGACAAG ccttcagtaccaatccagtctacttctgaagtgcctttttgccttttcagACGATGATCTGAGACAAACAGAAGGCTTTAAGAACGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACATTCCTTGGAGGAGGAAGACAAGgtaagaatggccccccaagcttagggcttagctgttctagtcttggagaa #### Drap1_ID984_6 --> 0 - 2 Original Alignment GATGAGTCTGAGGATACAGATACTGATGGGGAAGAA-GAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGag ctggagtaatgtcccaatctccttaatctgcctctgcctcctccccacagGATGAGTCTGAGGATATGGATACTGATGGAGAAGAGCGAGACACCCCAGCTTCCACCTCAGGCCAGTCACCCTCCTGCCCATTATCAGaggtaaaattcacacgggtagtgtaacactttttttaacctgttgatgctgg Alignment from CESAR GATGAGTCTGAGGATACAGATACTGATGGGGAAGAA-GAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGag ctggagtaatgtcccaatctccttaatctgcctctgcctcctccccacagGATGAGTCTGAGGATATGGATACTGATGGAGAAGAGCGAGACACCCCAGCTTCCACCTCAGGCCAGTCACCCTCCTGCCCATTATCAGaggtaaaattcacacgggtagtgtaacactttttttaacctgttgatgctgg Alignment from Spaln_aa2Genome GATGAGTCTGAGGATACAGATACTGATGGGGAAGAA-GAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG ctggagtaatgtcccaatctccttaatctgcctctgcctcctccccacagGATGAGTCTGAGGATATGGATACTGATGGAGAAGAGcGAGACACCCCAGCTTCCACCTCAGGCCAGTCACCCTCCTGCCCATTATCAGAGgtaaaattcacacgggtagtgtaacactttttttaacctgttgatgctgg Alignment from Spaln_nt2Genome GATGAGTCTGAGGATACAGATACTGATGGGGAAGAA-GAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG ctggagtaatgtcccaatctccttaatctgcctctgcctcctccccacagGATGAGTCTGAGGATATGGATACTGATGGAGAAGAGCGAGACACCCCAGCTTCCACCTCAGGCCAGTCACCCTCCTGCCCATTATCAGAGgtaaaattcacacgggtagtgtaacactttttttaacctgttgatgctgg Alignment from Pairagon GATGAGTCTGAGGATACAGATACTGATGGGGAAGAA-GAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG ctggagtaatgtcccaatctccttaatctgcctctgcctcctccccacagGATGAGTCTGAGGATATGGATACTGATGGAGAAGAGCGAGACACCCCAGCTTCCACCTCAGGCCAGTCACCCTCCTGCCCATTATCAGAGgtaaaattcacacgggtagtgtaacactttttttaacctgttgatgctgg Alignment from Exonerate_protein2genome GATGAGTCTGAGGATACAGATACTGATGGGGAAGAA-GAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG ctggagtaatgtcccaatctccttaatctgcctctgcctcctccccacagGATGAGTCTGAGGATATGGATACTGATGGAGAAGAGCGAGACACCCCAGCTTCCACCTCAGGCCAGTCACCCTCCTGCCCATTATCAGAGgtaaaattcacacgggtagtgtaacactttttttaacctgttgatgctgg Alignment from Exonerate_coding2genome GATGAGTCTGAGGATACAGATACTGATGGGGAAGAA-GAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG ctggagtaatgtcccaatctccttaatctgcctctgcctcctccccacagGATGAGTCTGAGGATATGGATACTGATGGAGAAGAGCGAGACACCCCAGCTTCCACCTCAGGCCAGTCACCCTCCTGCCCATTATCAGAGgtaaaattcacacgggtagtgtaacactttttttaacctgttgatgctgg Alignment from GeneWise GATGAGTCTGAGGATACAGATACTGATGGGGAAGAA-GAGACACCACAGCTTCCACCCCAAGCCAGTCACCCTCCTGCCCACTTTCAGAG ctggagtaatgtcccaatctccttaatctgcctctgcctcctccccacagGATGAGTCTGAGGATATGGATACTGATGGAGAAGAGCGAGACACCCCAGCTTCCACCTCAGGCCAGTCACCCTCCTGCCCATTATCAGAGgtaaaattcacacgggtagtgtaacactttttttaacctgttgatgctgg #### Eef1g_ID2562_4 --> 2 - 0 Original Alignment taAGCAATGAGGAGCTGCGA-GGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagctttatgttgttatgtactaaatgtttttccctttcacaattctagtgAGCAATGAGGAACTGCGACGGAAGTGCACCAGAGGCAGCAGCTCAGGTAGCACAGTGGGTTAGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtaatttttgttggtgatgggccaccaatagagtgagagttggaagccca Alignment from CESAR taAGCAATGAGGAGCTGCGA-GGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagctttatgttgttatgtactaaatgtttttccctttcacaattctagtgAGCAATGAGGAACTGCGACGGAAGTGCACCAGAGGCAGCAGCTCAGGTAGCACAGTGGGTTAGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtaatttttgttggtgatgggccaccaatagagtgagagttggaagccca Alignment from Spaln_aa2Genome TAAGCAATGAGGAGCTGCGA-GGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagctttatgttgttatgtactaaatgtttttccctttcacaattctagTGAGCAATGAGGAACTGCGAcGGAAGTGCACCAGAGGCAGCAGCTCAGGTAGCACAGTGGGTTAGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtaatttttgttggtgatgggccaccaatagagtgagagttggaagccca Alignment from Spaln_nt2Genome TAAGCAATGAGGAGCTGCGA-GGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagctttatgttgttatgtactaaatgtttttccctttcacaattctagTGAGCAATGAGGAACTGCGACGGAAGTGCACCAGAGGCAGCAGCTCAGGTAGCACAGTGGGTTAGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtaatttttgttggtgatgggccaccaatagagtgagagttggaagccca Alignment from Pairagon TAAGCAATGAGGAGCTGCGA-GGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagctttatgttgttatgtactaaatgtttttccctttcacaattctagTGAGCAATGAGGAACTGCGACGGAAGTGCACCAGAGGCAGCAGCTCAGGTAGCACAGTGGGTTAGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtaatttttgttggtgatgggccaccaatagagtgagagttggaagccca Alignment from Exonerate_protein2genome TAAGCAATGAGGAGCTGCGA-GGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagctttatgttgttatgtactaaatgtttttccctttcacaattctagTGAGCAATGAGGAACTGCGACGGAAGTGCACCAGAGGCAGCAGCTCAGGTAGCACAGTGGGTTAGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtaatttttgttggtgatgggccaccaatagagtgagagttggaagccca Alignment from Exonerate_coding2genome TAAGCAATGAGGAGCTGCGA-GGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagctttatgttgttatgtactaaatgtttttccctttcacaattctagTGAGCAATGAGGAACTGCGACGGAAGTGCACCAGAGGCAGCAGCTCAGGTAGCACAGTGGGTTAGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtaatttttgttggtgatgggccaccaatagagtgagagttggaagccca Alignment from GeneWise CAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTGGTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagctttatgttgttatgtactaaatgtttttccctttcacaattctagtgagcaatgagGAACTGCGAC------GGAAGTGCACCAGAGGCAGCAGCTCAGGTAGCACAGTGGGTTAGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtaatttttgttggtgatgggccaccaatagagtgagagttggaagccca #### Eef1g_ID2567_9 --> 2 - 0 Original Alignment ggATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCC-ATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggataaacaaaggtagtagggaatgctctcttttctcatttcaggtATGTTCCAGCGGCTGGACAAACTGAGGAAGAATGCCTTTGCCAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCGCATTTCTGGTGTTTGGGTCTTTCGAGGCCAGGAGCTTGCCTATCCAgtgaggctttgggaagagagacatcatgatgggggtccagaagctttgag Alignment from CESAR ggATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCC-ATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggataaacaaaggtagtagggaatgctctcttttctcatttcaggtATGTTCCAGCGGCTGGACAAACTGAGGAAGAATGCCTTTGCCAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCGCATTTCTGGTGTTTGGGTCTTTCGAGGCCAGGAGCTTGCCTATCCAgtgaggctttgggaagagagacatcatgatgggggtccagaagctttgag Alignment from Spaln_aa2Genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCC-ATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggataaacaaaggtagtagggaatgctctcttttctcatttcagGTATGTTCCAGCGGCTGGACAAACTGAGGAAGAATGCCTTTGCCAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCGcATTTCTGGTGTTTGGGTCTTTCGAGGCCAGGAGCTTGCCTATCCAgtgaggctttgggaagagagacatcatgatgggggtccagaagctttgag Alignment from Spaln_nt2Genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTC-CATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggataaacaaaggtagtagggaatgctctcttttctcatttcagGTATGTTCCAGCGGCTGGACAAACTGAGGAAGAATGCCTTTGCCAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCGCATTTCTGGTGTTTGGGTCTTTCGAGGCCAGGAGCTTGCCTATCCAgtgaggctttgggaagagagacatcatgatgggggtccagaagctttgag Alignment from Pairagon GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTC-CATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggataaacaaaggtagtagggaatgctctcttttctcatttcagGTATGTTCCAGCGGCTGGACAAACTGAGGAAGAATGCCTTTGCCAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCGCATTTCTGGTGTTTGGGTCTTTCGAGGCCAGGAGCTTGCCTATCCAgtgaggctttgggaagagagacatcatgatgggggtccagaagctttgag Alignment from Exonerate_protein2genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCC-ATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggataaacaaaggtagtagggaatgctctcttttctcatttcagGTATGTTCCAGCGGCTGGACAAACTGAGGAAGAATGCCTTTGCCAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCGCATTTCTGGTGTTTGGGTCTTTCGAGGCCAGGAGCTTGCCTATCCAgtgaggctttgggaagagagacatcatgatgggggtccagaagctttgag Alignment from Exonerate_coding2genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCC-ATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggataaacaaaggtagtagggaatgctctcttttctcatttcagGTATGTTCCAGCGGCTGGACAAACTGAGGAAGAATGCCTTTGCCAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCGCATTTCTGGTGTTTGGGTCTTTCGAGGCCAGGAGCTTGCCTATCCAgtgaggctttgggaagagagacatcatgatgggggtccagaagctttgag Alignment from GeneWise GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGC-TCCATTTCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggataaacaaaggtagtagggaatgctctcttttctcatttcagGTATGTTCCAGCGGCTGGACAAACTGAGGAAGAATGCCTTTGCCAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCGCATTTCTGGTGTTTGGGTCTTTCGAGGCCAGGAGCTTGCCTATCCAgtgaggctttgggaagagagacatcatgatgggggtccagaagctttgag #### Efemp2_ID1035_8 --> 2 - 2 Original Alignment atATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAAC-TTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACaa acttaccatgagtatggtactcagactcctctttatttgctcttccccagatTTAGATGACTGTGAGACAGGTGCTCACCGATGTTCTGAGGCCCAAACCTGTGTCAATCTTCCATGCTGGTTACCGCTGTGTGGAGACCAACCGTTGTGTAGAACCATATGTCCATGTATCAGACaagtaggtgcacctggcacctgctgacttgtgtaggtcaagatgtcagtggg Alignment from CESAR atATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAAC-TTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACaa acttaccatgagtatggtactcagactcctctttatttgctcttccccagatTTAGATGACTGTGAGACAGGTGCTCACCGATGTTCTGAGGCCCAAACCTGTGTCAATCTTCCATGCTGGTTACCGCTGTGTGGAGACCAACCGTTGTGTAGAACCATATGTCCATGTATCAGACaagtaggtgcacctggcacctgctgacttgtgtaggtcaagatgtcagtggg Alignment from Spaln_aa2Genome ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAAC-TTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttaccatgagtatggtactcagactcctctttatttgctcttccccagATTTAGATGACTGTGAGACAGGTGCTCACCGATGTTCTGAGGCCCAAACCTGTGTCAATcTTCCATGCTGGTTACCGCTGTGTGGAGACCAACCGTTGTGTAGAACCATATGTCCATGTATCAGACAAgtaggtgcacctggcacctgctgacttgtgtaggtcaagatgtcagtggg Alignment from Spaln_nt2Genome ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAA-CTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttaccatgagtatggtactcagactcctctttatttgctcttccccagATTTAGATGACTGTGAGACAGGTGCTCACCGATGTTCTGAGGCCCAAACCTGTGTCAATCTTCCATGCTGGTTACCGCTGTGTGGAGACCAACCGTTGTGTAGAACCATATGTCCATGTATCAGACAAgtaggtgcacctggcacctgctgacttgtgtaggtcaagatgtcagtggg Alignment from Pairagon ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAA-CTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttaccatgagtatggtactcagactcctctttatttgctcttccccagATTTAGATGACTGTGAGACAGGTGCTCACCGATGTTCTGAGGCCCAAACCTGTGTCAATCTTCCATGCTGGTTACCGCTGTGTGGAGACCAACCGTTGTGTAGAACCATATGTCCATGTATCAGACAAgtaggtgcacctggcacctgctgacttgtgtaggtcaagatgtcagtggg Alignment from Exonerate_protein2genome ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAAC-TTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttaccatgagtatggtactcagactcctctttatttgctcttccccagATTTAGATGACTGTGAGACAGGTGCTCACCGATGTTCTGAGGCCCAAACCTGTGTCAATCTTCCATGCTGGTTACCGCTGTGTGGAGACCAACCGTTGTGTAGAACCATATGTCCATGTATCAGACAAgtaggtgcacctggcacctgctgacttgtgtaggtcaagatgtcagtggg Alignment from Exonerate_coding2genome ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTCAAC-TTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttaccatgagtatggtactcagactcctctttatttgctcttccccagATTTAGATGACTGTGAGACAGGTGCTCACCGATGTTCTGAGGCCCAAACCTGTGTCAATCTTCCATGCTGGTTACCGCTGTGTGGAGACCAACCGTTGTGTAGAACCATATGTCCATGTATCAGACAAgtaggtgcacctggcacctgctgacttgtgtaggtcaagatgtcagtggg Alignment from GeneWise ATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACCTGTGTC-AACTTCCATGGGGGTTACCGCTGTGTGGACACCAACCGTTGTGTGGAGCCCTATGTCCAAGTGTCAGACAA acttaccatgagtatggtactcagactcctctttatttgctcttccccagATTTAGATGACTGTGAGACAGGTGCTCACCGATGTTCTGAGGCCCAAACCTGTGTCAATCTTCCATGCTGGTTACCGCTGTGTGGAGACCAACCGTTGTGTAGAACCATATGTCCATGTATCAGACAAgtaggtgcacctggcacctgctgacttgtgtaggtcaagatgtcagtggg #### Ehbp1l1_ID1217_18 --> 2 - 2 Original Alignment agTGGCAGAAAACAGTTGCGCAGCAGCAC-CGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGat cctcttcttagaagggcagaagaagtctacttgtctgtttttacttctagaaTGGCAGAAAACAGTTGCACAGCAGCACCCGTGAACAACTCCTGCTGGAGGAGCTTGTATCTTTAGTAAACCAGAGGGAAGAGCTGGTCCGGGACCTAGATCAGAAGGAGCGGgtgtaagtatctgagcattcttggttttggggagcccccattgaggagcccc Alignment from CESAR agTGGCAGAAAACAGTTGCGCAGCAGCAC-CGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGat cctcttcttagaagggcagaagaagtctacttgtctgtttttacttctagaaTGGCAGAAAACAGTTGCACAGCAGCACCCGTGAACAACTCCTGCTGGAGGAGCTTGTATCTTTAGTAAACCAGAGGGAAGAGCTGGTCCGGGACCTAGATCAGAAGGAGCGGgtgtaagtatctgagcattcttggttttggggagcccccattgaggagcccc Alignment from Spaln_aa2Genome AGTGGCAGAAAACAGTTGCGCAGCAGCAC-CGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT cctcttcttagaagggcagaagaagtctacttgtctgtttttacttctagAATGGCAGAAAACAGTTGCACAGCAGCACcCGTGAACAACTCCTGCTGGAGGAGCTTGTATCTTTAGTAAACCAGAGGGAAGAGCTGGTCCGGGACCTAGATCAGAAGGAGCGGGTgtaagtatctgagcattcttggttttggggagcccccattgaggagcccc Alignment from Spaln_nt2Genome AGTGGCAGAAAACAGTTGCGCAGCAGCACC-GCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT cctcttcttagaagggcagaagaagtctacttgtctgtttttacttctagAATGGCAGAAAACAGTTGCACAGCAGCACCCGTGAACAACTCCTGCTGGAGGAGCTTGTATCTTTAGTAAACCAGAGGGAAGAGCTGGTCCGGGACCTAGATCAGAAGGAGCGGGTgtaagtatctgagcattcttggttttggggagcccccattgaggagcccc Alignment from Pairagon AGTGGCAGAAAACAGTTGCGCAGCAGCA-CCGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT cctcttcttagaagggcagaagaagtctacttgtctgtttttacttctagAATGGCAGAAAACAGTTGCACAGCAGCACCCGTGAACAACTCCTGCTGGAGGAGCTTGTATCTTTAGTAAACCAGAGGGAAGAGCTGGTCCGGGACCTAGATCAGAAGGAGCGGGTgtaagtatctgagcattcttggttttggggagcccccattgaggagcccc Alignment from Exonerate_protein2genome AGTGGCAGAAAACAGTTGCGCAGCAGCAC-CGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT cctcttcttagaagggcagaagaagtctacttgtctgtttttacttctagAATGGCAGAAAACAGTTGCACAGCAGCACCCGTGAACAACTCCTGCTGGAGGAGCTTGTATCTTTAGTAAACCAGAGGGAAGAGCTGGTCCGGGACCTAGATCAGAAGGAGCGGGTgtaagtatctgagcattcttggttttggggagcccccattgaggagcccc Alignment from Exonerate_coding2genome AGTGGCAGAAAACAGTTGCGCAGCAGCAC-CGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT cctcttcttagaagggcagaagaagtctacttgtctgtttttacttctagAATGGCAGAAAACAGTTGCACAGCAGCACCCGTGAACAACTCCTGCTGGAGGAGCTTGTATCTTTAGTAAACCAGAGGGAAGAGCTGGTCCGGGACCTAGATCAGAAGGAGCGGGTgtaagtatctgagcattcttggttttggggagcccccattgaggagcccc Alignment from GeneWise AGTGGCAGAAAACAGTTGCGCAGCAGCAC-CGCGAGCAACTCCTGTTGGAGGAGCTGGTGTCTCTGGTGAACCAGAGGGATGAACTGGTCCGGGACCTGGACCAGAAGGAACGGAT cctcttcttagaagggcagaagaagtctacttgtctgtttttacttctagAATGGCAGAAAACAGTTGCACAGCAGCACCCGTGAACAACTCCTGCTGGAGGAGCTTGTATCTTTAGTAAACCAGAGGGAAGAGCTGGTCCGGGACCTAGATCAGAAGGAGCGGGTgtaagtatctgagcattcttggttttggggagcccccattgaggagcccc #### Ehbp1l1_ID1225_10 --> 0 - 2 Original Alignment GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGC-TACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGat cccaaagatcatgtgaatcagggcacacaatttttcctttttccttttagGCACCACCTAGCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTGACCAATGGCCTACCGTGGTGTCTGTATAACCAAGTTCACCACATCCTGGCGCAATGGCTTGGCCTTCTGTGCTATTTTGCATCGATTCTACCCTGACAAGatgtgaggcaacggtcagggggagggtgagactgtcagggcaccatgaacat Alignment from CESAR GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGC-TACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGat cccaaagatcatgtgaatcagggcacacaatttttcctttttccttttagGCACCACCTAGCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTGACCAATGGCCTACCGTGGTGTCTGTATAACCAAGTTCACCACATCCTGGCGCAATGGCTTGGCCTTCTGTGCTATTTTGCATCGATTCTACCCTGACAAGatgtgaggcaacggtcagggggagggtgagactgtcagggcaccatgaacat Alignment from Spaln_aa2Genome GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGC-TACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT cccaaagatcatgtgaatcagggcacacaatttttcctttttccttttagGCACCACCTAGCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTGACCAATGGCcTACCGTGGTGTCTGTATAACCAAGTTCACCACATCCTGGCGCAATGGCTTGGCCTTCTGTGCTATTTTGCATCGATTCTACCCTGACAAGATgtgaggcaacggtcagggggagggtgagactgtcagggcaccatgaacat Alignment from Spaln_nt2Genome GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGG-CTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT cccaaagatcatgtgaatcagggcacacaatttttcctttttccttttagGCACCACCTAGCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTGACCAATGGCCTACCGTGGTGTCTGTATAACCAAGTTCACCACATCCTGGCGCAATGGCTTGGCCTTCTGTGCTATTTTGCATCGATTCTACCCTGACAAGATgtgaggcaacggtcagggggagggtgagactgtcagggcaccatgaacat Alignment from Pairagon GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGG-CTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT cccaaagatcatgtgaatcagggcacacaatttttcctttttccttttagGCACCACCTAGCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTGACCAATGGCCTACCGTGGTGTCTGTATAACCAAGTTCACCACATCCTGGCGCAATGGCTTGGCCTTCTGTGCTATTTTGCATCGATTCTACCCTGACAAGATgtgaggcaacggtcagggggagggtgagactgtcagggcaccatgaacat Alignment from Exonerate_protein2genome GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGC-TACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT cccaaagatcatgtgaatcagggcacacaatttttcctttttccttttagGCACCACCTAGCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTGACCAATGGCCTACCGTGGTGTCTGTATAACCAAGTTCACCACATCCTGGCGCAATGGCTTGGCCTTCTGTGCTATTTTGCATCGATTCTACCCTGACAAGATgtgaggcaacggtcagggggagggtgagactgtcagggcaccatgaacat Alignment from Exonerate_coding2genome GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAACGGC-TACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT cccaaagatcatgtgaatcagggcacacaatttttcctttttccttttagGCACCACCTAGCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTGACCAATGGCCTACCGTGGTGTCTGTATAACCAAGTTCACCACATCCTGGCGCAATGGCTTGGCCTTCTGTGCTATTTTGCATCGATTCTACCCTGACAAGATgtgaggcaacggtcagggggagggtgagactgtcagggcaccatgaacat Alignment from GeneWise GCACCACCTACCCTGGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAGGTCACCAAC-GGCTACCGTGGTGTCTGCATCACCAACTTCACCACGTCCTGGCGCAATGGCCTGGCCTTCTGTGCTATTTTACATCGATTCTACCCAGACAAGAT cccaaagatcatgtgaatcagggcacacaatttttcctttttccttttagGCACCACCTAGCCTAGTCAGCTCCAGCCAGTCCCTGTTGGAGTGGTGCCAAGAAGTGACCAATGGCCTACCGTGGTGTCTGTATAACCAAGTTCACCACATCCTGGCGCAATGGCTTGGCCTTCTGTGCTATTTTGCATCGATTCTACCCTGACAAGATgtgaggcaacggtcagggggagggtgagactgtcagggcaccatgaacat #### Ehbp1l1_ID1228_7 --> 2 - 1 Original Alignment atCTGTCTCGAGAGCTGAAGACACTCTGT-GAAGAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAg aaccatatgcttgtgtatgatttcatcccaccgatccctttctgtcacagatCTGTCACGTGAGCTGAAGACACTCTGTCGAGGAAGAAGATGAAGGCCACATACGTCCCCAGCAGTCAggtatggctggtaatggggttgcagtctgaacctacatgacctgagaatct Alignment from CESAR atCTGTCTCGAGAGCTGAAGACACTCTGT-GAAGAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAg aaccatatgcttgtgtatgatttcatcccaccgatccctttctgtcacagatCTGTCACGTGAGCTGAAGACACTCTGTCGAGGAAGAAGATGAAGGCCACATACGTCCCCAGCAGTCAggtatggctggtaatggggttgcagtctgaacctacatgacctgtatacaa Alignment from Spaln_aa2Genome ATCTGTCTCGAGAGCTGAAGACACTCTGT-GAAGAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAG aaccatatgcttgtgtatgatttcatcccaccgatccctttctgtcacagATCTGTCACGTGAGCTGAAGACACTCTGTcGAGGAAGAAGATGAAGGCCACATACGTCCCCAGCAGTCAGgtatggctggtaatggggttgcagtctgaacctacatgacctgagaatct Alignment from Spaln_nt2Genome ATCTGTCTCGAGAGCTGAAGACACTCTGT-GAAGAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAG aaccatatgcttgtgtatgatttcatcccaccgatccctttctgtcacagATCTGTCACGTGAGCTGAAGACACTCTGTCGAGGAAGAAGATGAAGGCCACATACGTCCCCAGCAGTCAGgtatggctggtaatggggttgcagtctgaacctacatgacctgagaatct Alignment from Pairagon ATCTGTCTCGAGAGCTGAAGACACTCTGT-GAAGAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAG aaccatatgcttgtgtatgatttcatcccaccgatccctttctgtcacagATCTGTCACGTGAGCTGAAGACACTCTGTCGAGGAAGAAGATGAAGGCCACATACGTCCCCAGCAGTCAGgtatggctggtaatggggttgcagtctgaacctacatgacctgagaatct Alignment from Exonerate_protein2genome aaccatatgcttgtgtatgatttcatcccaccgatccctttctgtcacagatctgtcacgtgagctgaagacactctgtcgaggaagaagatgaaggccacatacgtccccagcagtcaggtatggctggtaatggggttgcagtctgaacctacatgacctgagaatct Alignment from Exonerate_coding2genome aaccatatgcttgtgtatgatttcatcccaccgatccctttctgtcacagatctgtcacgtgagctgaagacactctgtcgaggaagaagatgaaggccacatacgtccccagcagtcaggtatggctggtaatggggttgcagtctgaacctacatgacctgagaatct Alignment from GeneWise ATCTGTCTCGAGAGCTGAAGACACTCTGT-GAAGAAGAAGATGAAGGCCACATACGGCCCCAGCAGGCAG aaccatatgcttgtgtatgatttcatcccaccgatccctttctgtcacagATCTGTCACGTGAGCTGAAGACACTCTGTCGAGGAAGAAGATGAAGGCCACATACGTCCCCAGCAGTCAGgtatggctggtaatggggttgcagtctgaacctacatgacctgagaatct #### Ehbp1l1_ID1230_5 --> 0 - 2 Original Alignment GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCC-GAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCac attgcaactatccatcttcacacttctctattgtttccttatcttcacagGAGTCAAAGGGACAGCGGAAAGTACTGGCAACAGTTGGTGTCAACTTAGACCATCACGCAGGGCCCATACCTGCCCAGATCTCACTTCAACTGCGGCAGAAGCCCAAGTCTGTGAAAGTTGTGCATGCTCGAGCTTAGCCTCACCCTTGCAGTC---CTCCTACAAGAAGGCCGTGCCacgtaagagcagaccaatcctctaccgggcacctgggcttggcagctgtgag Alignment from CESAR GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCC-GAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCac attgcaactatccatcttcacacttctctattgtttccttatcttcacagGAGTCAAAGGGACAGCGGAAAGTACTGGCAACAGTTGGTGTCAACTTAGACCATCACGCAGGGCCCATACCTGCCCAGATCTCACTTCAACTGCGGCAGAAGCCCAAGTCTGTGAAAGTTGTGCATGCTCGAGCTTAGCCTCACCCTTGCA---GTCCTCCTACAAGAAGGCCGTGCCacgtaagagcagaccaatcctctaccgggcacctgggcttggcagctgtgag Alignment from Spaln_aa2Genome GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGCC-GAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactatccatcttcacacttctctattgtttccttatcttcacagGAGTCAAAGGGACAGCGGAAAGTACTGGCAACAGTTGGTGTCAACTTAGACCATCACGCAGGGCCCATACCTGCCCAGATCTCACTTCAACTGCGGCAGAAGCCCAAGTCTGTGAAAGTTGTGCATGCTcGAGCTTAGCCTCACCCTTGCA---GTCCTCCTACAAGAAGGCCGTGCCACgtaagagcagaccaatcctctaccgggcacctgggcttggcagctgtgag Alignment from Spaln_nt2Genome GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGC-CGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactatccatcttcacacttctctattgtttccttatcttcacagGAGTCAAAGGGACAGCGGAAAGTACTGGCAACAGTTGGTGTCAACTTAGACCATCACGCAGGGCCCATACCTGCCCAGATCTCACTTCAACTGCGGCAGAAGCCCAAGTCTGTGAAAGTTGTGCATGCTCGAGCTTAGCCTCACCCT---TGCAGTCCTCCTACAAGAAGGCCGTGCCACgtaagagcagaccaatcctctaccgggcacctgggcttggcagctgtgag Alignment from Pairagon GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCATGC-CGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactatccatcttcacacttctctattgtttccttatcttcacagGAGTCAAAGGGACAGCGGAAAGTACTGGCAACAGTTGGTGTCAACTTAGACCATCACGCAGGGCCCATACCTGCCCAGATCTCACTTCAACTGCGGCAGAAGCCCAAGTCTGTGAAAGTTGTGCATGCTCGAGCTTAGCCTCACCCT---TGCAGTCCTCCTACAAGAAGGCCGTGCCACgtaagagcagaccaatcctctaccgggcacctgggcttggcagctgtgag Alignment from Exonerate_protein2genome attgcaactatccatcttcacacttctctattgtttccttatcttcacaggagtcaaagggacagcggaaagtactggcaacagttggtgtcaacttagaccatcacgcagggcccatacctgcccagatctcacttcaactgcggcagaagcccaagtctgtgaaagttgtgcatgctcgagcttagcctcacccttgcagtcctcctacaagaaggccgtgccacgtaagagcagaccaatcctctaccgggcacctgggcttggcagctgtgag Alignment from Exonerate_coding2genome attgcaactatccatcttcacacttctctattgtttccttatcttcacaggagtcaaagggacagcggaaagtactggcaacagttggtgtcaacttagaccatcacgcagggcccatacctgcccagatctcacttcaactgcggcagaagcccaagtctgtgaaagttgtgcatgctcgagcttagcctcacccttgcagtcctcctacaagaaggccgtgccacgtaagagcagaccaatcctctaccgggcacctgggcttggcagctgtgag Alignment from GeneWise GAGTCCAAGGGACAGCGGAAGGTACTGGCCACAGTTGATGTGAACCTAGCCCACCATGCAGGGCCTGTGCCTGCTCAGGTTCCACTTCGACTGCGGCTGAAGCCCAAATCTGTGAAGGTGGTGCAT-GCCGAACTGAGCCTCACCCTTTCTGGGGTGCTGCTGCGAGAAGGCCGTGCCAC attgcaactatccatcttcacacttctctattgtttccttatcttcacagGAGTCAAAGGGACAGCGGAAAGTACTGGCAACAGTTGGTGTCAACTTAGACCATCACGCAGGGCCCATACCTGCCCAGATCTCACTTCAACTGCGGCAGAAGCCCAAGTCTGTGAAAGTTGTGCATGCTCGAGCTTAGCCTCACCCTTGCA---GTCCTCCTACAAGAAGGCCGTGCCACgtaagagcagaccaatcctctaccgggcacctgggcttggcagctgtgag #### Ehbp1l1_ID1231_4 --> 0 - 0 Original Alignment GACCCTCATGTGGACCAGTATGAAACC-AAAGAGTGGACTTTTATTATTGAAAAT ttctgatgctctttcctggaaactctgtccgtgctgtcctttgtccacagGATCCTCATGTGGACCAGTATGAAACCCAAAGAGTGGACATTCATTATTGAAAATgtaagtcattgggacagtatacattcacctctaattgagagtattgcaac Alignment from CESAR GACCCTCATGTGGACCAGTATGAAACC-AAAGAGTGGACTTTTATTATTGAAAAT ttctgatgctctttcctggaaactctgtccgtgctgtcctttgtccacagGATCCTCATGTGGACCAGTATGAAACCCAAAGAGTGGACATTCATTATTGAAAATgtaagtcattgggacagtatacattcacctctaattgagagtattgcaac Alignment from Spaln_aa2Genome GACCCTCATGTGGACCAGTATGAAACC-AAAGAGTGGACTTTTATTATTGAAAAT ttctgatgctctttcctggaaactctgtccgtgctgtcctttgtccacagGATCCTCATGTGGACCAGTATGAAACCcAAAGAGTGGACATTCATTATTGAAAATgtaagtcattgggacagtatacattcacctctaattgagagtattgcaac Alignment from Spaln_nt2Genome GACCCTCATGTGGACCAGTATGAAACCAA-AGAGTGGACTTTTATTATTGAAAAT ttctgatgctctttcctggaaactctgtccgtgctgtcctttgtccacagGATCCTCATGTGGACCAGTATGAAACCCAAAGAGTGGACATTCATTATTGAAAATgtaagtcattgggacagtatacattcacctctaattgagagtattgcaac Alignment from Pairagon GACCCTCATGTGGACCAGTATGAAA-CCAAAGAGTGGACTTTTATTATTGAAAAT ttctgatgctctttcctggaaactctgtccgtgctgtcctttgtccacagGATCCTCATGTGGACCAGTATGAAACCCAAAGAGTGGACATTCATTATTGAAAATgtaagtcattgggacagtatacattcacctctaattgagagtattgcaac Alignment from Exonerate_protein2genome ttctgatgctctttcctggaaactctgtccgtgctgtcctttgtccacaggatcctcatgtggaccagtatgaaacccaaagagtggacattcattattgaaaatgtaagtcattgggacagtatacattcacctctaattgagagtattgcaac Alignment from Exonerate_coding2genome ttctgatgctctttcctggaaactctgtccgtgctgtcctttgtccacaggatcctcatgtggaccagtatgaaacccaaagagtggacattcattattgaaaatgtaagtcattgggacagtatacattcacctctaattgagagtattgcaac Alignment from GeneWise GACCCTCATGTGGACCAGTATGAAACC-AAAGAGTGGACTTTTATTATTGAAAAT ttctgatgctctttcctggaaactctgtccgtgctgtcctttgtccacagGATCCTCATGTGGACCAGTATGAAACCCAAAGAGTGGACATTCATTATTGAAAATgtaagtcattgggacagtatacattcacctctaattgagagtattgcaac #### Eif1ad_ID949_2 --> 0 - 1 Original Alignment GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGG-CAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAg caggttttgaataatgagctagctggctttttttttttgaacatcataagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGGTGGAAACTGCTCAGGGGCCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGAACATCTGGATCAAGAGAggtgagttccatttgcttttctcaataccaaagactctcggccaacatgtt Alignment from CESAR GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGG-CAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAg caggttttgaataatgagctagctggctttttttttttgaacatcataagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGGTGGAAACTGCTCAGGGGCCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGAACATCTGGATCAAGAGAggtgagttccatttgcttttctcaataccaaagactctcggccaacatgtt Alignment from Spaln_aa2Genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAG-GGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG caggttttgaataatgagctagctggctttttttttttgaacatcataagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGGTGGAAACTGCTCAGgGGCCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGAACATCTGGATCAAGAGAGgtgagttccatttgcttttctcaataccaaagactctcggccaacatgtt Alignment from Spaln_nt2Genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGGC-AGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG caggttttgaataatgagctagctggctttttttttttgaacatcataagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGGTGGAAACTGCTCAGGGGCCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGAACATCTGGATCAAGAGAGgtgagttccatttgcttttctcaataccaaagactctcggccaacatgtt Alignment from Pairagon GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGG-CAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG caggttttgaataatgagctagctggctttttttttttgaacatcataagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGGTGGAAACTGCTCAGGGGCCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGAACATCTGGATCAAGAGAGgtgagttccatttgcttttctcaataccaaagactctcggccaacatgtt Alignment from Exonerate_protein2genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAG-GGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG caggttttgaataatgagctagctggctttttttttttgaacatcataagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGGTGGAAACTGCTCAGGGGCCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGAACATCTGGATCAAGAGAGgtgagttccatttgcttttctcaataccaaagactctcggccaacatgtt Alignment from Exonerate_coding2genome GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAG-GGGCAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG caggttttgaataatgagctagctggctttttttttttgaacatcataagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGGTGGAAACTGCTCAGGGGCCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGAACATCTGGATCAAGAGAGgtgagttccatttgcttttctcaataccaaagactctcggccaacatgtt Alignment from GeneWise GTCCTCAGGACTCCTGGGAACAATCTGCATGAGGTGGAAACAGCACAGGGG-CAGCGCTTCCTGGTGAGCATGCCCTCCAAATACCGCAAGAACATCTGGATCAAGAGAG caggttttgaataatgagctagctggctttttttttttgaacatcataagGTCCTCAGGACCCCAGGGAACAATTTGCATGAGGTGGAAACTGCTCAGGGGCCAGCGCTTCCTGGTCAGCATGCCCTCCAAATACCGTAAGAACATCTGGATCAAGAGAGgtgagttccatttgcttttctcaataccaaagactctcggccaacatgtt #### Eif3a_ID13316_14 --> 0 - 0 Original Alignment ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGAC-CTGTGGGAACAGCAA---------------GAAGAAGAAAGA ggggcctgtcctgctacaggtctgtgtggattcttcatctctcctggaagATTGACTATTTTGAGAGGGTGAAGCGCTTGGAAGAAATTCCTCTAATAAAGAGTGCATACGAAGAACAAAGAGTTAAAGACATGGACCCTGTGGGAACAGCAAAAAGATGAAAGGGTAAAAGATGAAAGGgtaagtttttaaaacataactaaattaaagaaaaccaagaaagagttttc Alignment from CESAR ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGAC-CTGTGGGAACAGCAAGAAGAAGAAAGA ggggcctgtcctgctacaggtctgtgtggattcttcatctctcctggaagATTGACTATTTTGAGAGGGTGAAGCGCTTGGAAGAAATTCCTCTAATAAAGAGTGCATACGAAGAACAAAGAGTTAAAGACATGGACCCTGTGGGAACAGCAAAAAGATGAAAGGgtaaaagatgaaagggtaagtttttaaaacataactaaattaaagaaaaccaagaaagagttttc Alignment from Spaln_aa2Genome ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGAC-CTGTGGGAACAGCAAGAAGAAGAAAGA ggggcctgtcctgctacaggtctgtgtggattcttcatctctcctggaagATTGACTATTTTGAGAGGGTGAAGCGCTTGGAAGAAATTCCTCTAATAAAGAGTGCATACGAAGAACAAAGAGTTAAAGACATGGACcCTGTGGGAACAGCAAAAAGATGAAAGGgtaaaagatgaaagggtaagtttttaaaacataactaaattaaagaaaaccaagaaagagttttc Alignment from Spaln_nt2Genome ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGAC-CTGTGGGAACAGCAAGAAGAAGAAAGA ggggcctgtcctgctacaggtctgtgtggattcttcatctctcctggaagATTGACTATTTTGAGAGGGTGAAGCGCTTGGAAGAAATTCCTCTAATAAAGAGTGCATACGAAGAACAAAGAGTTAAAGACATGGACCCTGTGGGAACAGCAAAAAGATGAAAGGgtaaaagatgaaagggtaagtttttaaaacataactaaattaaagaaaaccaagaaagagttttc Alignment from Pairagon ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGA-CCTGTGGGAACAGCAAGAAGAAGAAAGA ggggcctgtcctgctacaggtctgtgtggattcttcatctctcctggaagATTGACTATTTTGAGAGGGTGAAGCGCTTGGAAGAAATTCCTCTAATAAAGAGTGCATACGAAGAACAAAGAGTTAAAGACATGGACCCTGTGGGAACAGCAAAAAGATGAAAGGgtaaaagatgaaagggtaagtttttaaaacataactaaattaaagaaaaccaagaaagagttttc Alignment from Exonerate_protein2genome ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGAC-CTGTGGGAACAGCAAGAAGAAGAAAGA ggggcctgtcctgctacaggtctgtgtggattcttcatctctcctggaagATTGACTATTTTGAGAGGGTGAAGCGCTTGGAAGAAATTCCTCTAATAAAGAGTGCATACGAAGAACAAAGAGTTAAAGACATGGACCCTGTGGGAACAGCAAAAAGATGAAAGGgtaaaagatgaaagggtaagtttttaaaacataactaaattaaagaaaaccaagaaagagttttc Alignment from Exonerate_coding2genome ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGAC-CTGTGGGAACAGCAAGAAGAAGAAAGA ggggcctgtcctgctacaggtctgtgtggattcttcatctctcctggaagATTGACTATTTTGAGAGGGTGAAGCGCTTGGAAGAAATTCCTCTAATAAAGAGTGCATACGAAGAACAAAGAGTTAAAGACATGGACCCTGTGGGAACAGCAAAAAGATGAAAGGgtaaaagatgaaagggtaagtttttaaaacataactaaattaaagaaaaccaagaaagagttttc Alignment from GeneWise ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAGAGTGCTTATGAGGAACAAAGGGTTAAAGACATGGAC-CTGTGGGAACAGCAAGAAGAAGAAAGA ggggcctgtcctgctacaggtctgtgtggattcttcatctctcctggaagATTGACTATTTTGAGAGGGTGAAGCGCTTGGAAGAAATTCCTCTAATAAAGAGTGCATACGAAGAACAAAGAGTTAAAGACATGGACCCTGTGGGAACAGCAAAAAGATGAAAGGgtaaaagatgaaagggtaagtttttaaaacataactaaattaaagaaaaccaagaaagagttttc #### Eif3a_ID13317_13 --> 0 - 0 Original Alignment GACCTTGAAGAA-CTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtggtgcatcaaggtaggtataagtatttatttccttttggcacagGACCTTGAAGAACCTGGATCAAGACTTTATTATGGCCAAACAGGTAGAACAGCTGGAAAAGGAAAAGAAGGAACTTCAGGAACGCCTCAAAACTCAAGAAGAGAAGgtgagtgtggatcactgataggttccaatcctaaagtaaattgcacctaa Alignment from CESAR GACCTTGAAGAA-CTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtggtgcatcaaggtaggtataagtatttatttccttttggcacagGACCTTGAAGAACCTGGATCAAGACTTTATTATGGCCAAACAGGTAGAACAGCTGGAAAAGGAAAAGAAGGAACTTCAGGAACGCCTCAAAACTCAAGAAGAGAAGgtgagtgtggatcactgataggttccaatcctaaagtaaattgcacctaa Alignment from Spaln_aa2Genome -GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtggtgcatcaaggtaggtataagtatttatttccttttggcacagGACCTTGAAGAACCTGGATCAAGACTTTATTATGGCCAAACAGGTAGAACAGCTGGAAAAGGAAAAGAAGGAACTTCAGGAACGCCTCAAAACTCAAGAAGAGAAGgtgagtgtggatcactgataggttccaatcctaaagtaaattgcacctaa Alignment from Spaln_nt2Genome GACCTTGAAGAAC-TGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtggtgcatcaaggtaggtataagtatttatttccttttggcacagGACCTTGAAGAACCTGGATCAAGACTTTATTATGGCCAAACAGGTAGAACAGCTGGAAAAGGAAAAGAAGGAACTTCAGGAACGCCTCAAAACTCAAGAAGAGAAGgtgagtgtggatcactgataggttccaatcctaaagtaaattgcacctaa Alignment from Pairagon GACCTTGAAGAA-CTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtggtgcatcaaggtaggtataagtatttatttccttttggcacagGACCTTGAAGAACCTGGATCAAGACTTTATTATGGCCAAACAGGTAGAACAGCTGGAAAAGGAAAAGAAGGAACTTCAGGAACGCCTCAAAACTCAAGAAGAGAAGgtgagtgtggatcactgataggttccaatcctaaagtaaattgcacctaa Alignment from Exonerate_protein2genome GACCTTGAAGAA-CTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtggtgcatcaaggtaggtataagtatttatttccttttggcacagGACCTTGAAGAACCTGGATCAAGACTTTATTATGGCCAAACAGGTAGAACAGCTGGAAAAGGAAAAGAAGGAACTTCAGGAACGCCTCAAAACTCAAGAAGAGAAGgtgagtgtggatcactgataggttccaatcctaaagtaaattgcacctaa Alignment from Exonerate_coding2genome GACCTTGAAGAA-CTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtggtgcatcaaggtaggtataagtatttatttccttttggcacagGACCTTGAAGAACCTGGATCAAGACTTTATTATGGCCAAACAGGTAGAACAGCTGGAAAAGGAAAAGAAGGAACTTCAGGAACGCCTCAAAACTCAAGAAGAGAAGgtgagtgtggatcactgataggttccaatcctaaagtaaattgcacctaa Alignment from GeneWise -GACCTTGAAGAACTGGATCCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtggtgcatcaaggtaggtataagtatttatttccttttggcacagGACCTTGAAGAACCTGGATCAAGACTTTATTATGGCCAAACAGGTAGAACAGCTGGAAAAGGAAAAGAAGGAACTTCAGGAACGCCTCAAAACTCAAGAAGAGAAGgtgagtgtggatcactgataggttccaatcctaaagtaaattgcacctaa #### Eif3a_ID13327_3 --> 0 - 2 Original Alignment GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGAT-ATAGAAGATCTGGATAATATTCAGACTCCTGAGag cttactctaaagatttagaagttgtcttcagccattcttctccattgcagGTAAACATTAAGTCTTTAAAGGATGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCCCAACAAATGGTGTTGGATCATAGAAGATCTGGATAATATCCAGACTCCTGAGaggtaagtagtaagagggcattttttatcatcagacaaagtgttacaataat Alignment from CESAR GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGAT-ATAGAAGATCTGGATAATATTCAGACTCCTGAGag cttactctaaagatttagaagttgtcttcagccattcttctccattgcagGTAAACATTAAGTCTTTAAAGGATGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCCCAACAAATGGTGTTGGATCATAGAAGATCTGGATAATATCCAGACTCCTGAGaggtaagtagtaagagggcattttttatcatcagacaaagtgttacaataat Alignment from Spaln_aa2Genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGAT-ATAGAAGATCTGGATAATATTCAGACTCCTGAGAG cttactctaaagatttagaagttgtcttcagccattcttctccattgcagGTAAACATTAAGTCTTTAAAGGATGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCCCAACAAATGGTGTTGGATcATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtaagtagtaagagggcattttttatcatcagacaaagtgttacaataat Alignment from Spaln_nt2Genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGAT-ATAGAAGATCTGGATAATATTCAGACTCCTGAGAG cttactctaaagatttagaagttgtcttcagccattcttctccattgcagGTAAACATTAAGTCTTTAAAGGATGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCCCAACAAATGGTGTTGGATCATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtaagtagtaagagggcattttttatcatcagacaaagtgttacaataat Alignment from Pairagon GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGAT-ATAGAAGATCTGGATAATATTCAGACTCCTGAGAG cttactctaaagatttagaagttgtcttcagccattcttctccattgcagGTAAACATTAAGTCTTTAAAGGATGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCCCAACAAATGGTGTTGGATCATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtaagtagtaagagggcattttttatcatcagacaaagtgttacaataat Alignment from Exonerate_protein2genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGAT-ATAGAAGATCTGGATAATATTCAGACTCCTGAGAG cttactctaaagatttagaagttgtcttcagccattcttctccattgcagGTAAACATTAAGTCTTTAAAGGATGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCCCAACAAATGGTGTTGGATCATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtaagtagtaagagggcattttttatcatcagacaaagtgttacaataat Alignment from Exonerate_coding2genome GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGAT-ATAGAAGATCTGGATAATATTCAGACTCCTGAGAG cttactctaaagatttagaagttgtcttcagccattcttctccattgcagGTAAACATTAAGTCTTTAAAGGATGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCCCAACAAATGGTGTTGGATCATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtaagtagtaagagggcattttttatcatcagacaaagtgttacaataat Alignment from GeneWise GTAAACATTAAATCTTTAGAAGATGTTGTTAGGGCATATTTGAAATTAGCAGAGGAAAAAACAGAAGCTGCTAAAGAAGAGTCCCAACAAATGGTGTTAGAT-ATAGAAGATCTGGATAATATTCAGACTCCTGAGAG cttactctaaagatttagaagttgtcttcagccattcttctccattgcagGTAAACATTAAGTCTTTAAAGGATGTTGTTAGGGCATATTTGAAGTTAGCAGAGGAAAAAACAGAAGCTGCTAGAGAAGAATCCCAACAAATGGTGTTGGATCATAGAAGATCTGGATAATATCCAGACTCCTGAGAGgtaagtagtaagagggcattttttatcatcagacaaagtgttacaataat #### Eml3_ID2507_6 --> 2 - 2 Original Alignment aaGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACC-CTGAGCCTCGACTGGgt ttgctgagtggcctccaaagaggaggctctctatttctcctgcttcttagaaGGGATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCAGAGACTCCTGACCCTTGATTGGgtgtatggggttaaaactgtcacacacaatggataccctggcatctttgcag Alignment from CESAR aaGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACC-CTGAGCCTCGACTGGgt ttgctgagtggcctccaaagaggaggctctctatttctcctgcttcttagaaGGGATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCAGAGACTCCTGACCCTTGATTGGgtgtatggggttaaaactgtcacacacaatggataccctggcatctttgcag Alignment from Spaln_aa2Genome AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACC-CTGAGCCTCGACTGGGT ttgctgagtggcctccaaagaggaggctctctatttctcctgcttcttagAAGGGATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCAGAGACTcCTGACCCTTGATTGGGTgtatggggttaaaactgtcacacacaatggataccctggcatctttgcag Alignment from Spaln_nt2Genome AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGAC-CCTGAGCCTCGACTGGGT ttgctgagtggcctccaaagaggaggctctctatttctcctgcttcttagAAGGGATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCAGAGACTCCTGACCCTTGATTGGGTgtatggggttaaaactgtcacacacaatggataccctggcatctttgcag Alignment from Pairagon AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGAC-CCTGAGCCTCGACTGGGT ttgctgagtggcctccaaagaggaggctctctatttctcctgcttcttagAAGGGATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCAGAGACTCCTGACCCTTGATTGGGTgtatggggttaaaactgtcacacacaatggataccctggcatctttgcag Alignment from Exonerate_protein2genome AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACC-CTGAGCCTCGACTGGGT ttgctgagtggcctccaaagaggaggctctctatttctcctgcttcttagAAGGGATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCAGAGACTCCTGACCCTTGATTGGGTgtatggggttaaaactgtcacacacaatggataccctggcatctttgcag Alignment from Exonerate_coding2genome AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACC-CTGAGCCTCGACTGGGT ttgctgagtggcctccaaagaggaggctctctatttctcctgcttcttagAAGGGATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCAGAGACTCCTGACCCTTGATTGGGTgtatggggttaaaactgtcacacacaatggataccctggcatctttgcag Alignment from GeneWise AAGGCATTTCAGTGAAGATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACC-CTGAGCCTCGACTGGGT ttgctgagtggcctccaaagaggaggctctctatttctcctgcttcttagAAGGGATTTCAGTGAAGATGTTCCTTTGTGGCCGTCCCATCACAATGTACATTCCATCTGGCATCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCAGAGACTCCTGACCCTTGATTGGGTgtatggggttaaaactgtcacacacaatggataccctggcatctttgcag #### Eml3_ID2508_7 --> 1 - 2 Original Alignment tTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGC-CAGAGACATTACCGGGGTCACACAGACTGCGTTCGAtg tcccttcctctaattcctttccctgaccttcttttacccttctctttcagtTATGGTTATAGAGGTCAGGATTCTCGCTCAAATCTATTTGTGCTACGCTCTGGGGAGGTCGTCTATCTTATTGCCTGTGTGGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGACCAGGAGGTGGTGGTCCAGAGACACTATCGGGGTCACACAGACTGTGTTCGAtggtgagtattgtggtggggctttagcacagagggggtaggtctttggcggg Alignment from CESAR tTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGC-CAGAGACATTACCGGGGTCACACAGACTGCGTTCGAtg tcccttcctctaattcctttccctgaccttcttttacccttctctttcagtTATGGTTATAGAGGTCAGGATTCTCGCTCAAATCTATTTGTGCTACGCTCTGGGGAGGTCGTCTATCTTATTGCCTGTGTGGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGACCAGGAGGTGGTGGTCCAGAGACACTATCGGGGTCACACAGACTGTGTTCGAtggtgagtattgtggtggggctttagcacagagggggtaggtctttggcggg Alignment from Spaln_aa2Genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGC-CAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctctaattcctttccctgaccttcttttacccttctctttcagTTATGGTTATAGAGGTCAGGATTCTCGCTCAAATCTATTTGTGCTACGCTCTGGGGAGGTCGTCTATCTTATTGCCTGTGTGGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGACCAGGAGGTGGTGGTcCAGAGACACTATCGGGGTCACACAGACTGTGTTCGATGgtgagtattgtggtggggctttagcacagagggggtaggtctttggcggg Alignment from Spaln_nt2Genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGG-CCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctctaattcctttccctgaccttcttttacccttctctttcagTTATGGTTATAGAGGTCAGGATTCTCGCTCAAATCTATTTGTGCTACGCTCTGGGGAGGTCGTCTATCTTATTGCCTGTGTGGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGACCAGGAGGTGGTGGTCCAGAGACACTATCGGGGTCACACAGACTGTGTTCGATGgtgagtattgtggtggggctttagcacagagggggtaggtctttggcggg Alignment from Pairagon TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGG-CCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctctaattcctttccctgaccttcttttacccttctctttcagTTATGGTTATAGAGGTCAGGATTCTCGCTCAAATCTATTTGTGCTACGCTCTGGGGAGGTCGTCTATCTTATTGCCTGTGTGGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGACCAGGAGGTGGTGGTCCAGAGACACTATCGGGGTCACACAGACTGTGTTCGATGgtgagtattgtggtggggctttagcacagagggggtaggtctttggcggg Alignment from Exonerate_protein2genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGC-CAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctctaattcctttccctgaccttcttttacccttctctttcagTTATGGTTATAGAGGTCAGGATTCTCGCTCAAATCTATTTGTGCTACGCTCTGGGGAGGTCGTCTATCTTATTGCCTGTGTGGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGACCAGGAGGTGGTGGTCCAGAGACACTATCGGGGTCACACAGACTGTGTTCGATGgtgagtattgtggtggggctttagcacagagggggtaggtctttggcggg Alignment from Exonerate_coding2genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGC-CAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctctaattcctttccctgaccttcttttacccttctctttcagTTATGGTTATAGAGGTCAGGATTCTCGCTCAAATCTATTTGTGCTACGCTCTGGGGAGGTCGTCTATCTTATTGCCTGTGTGGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGACCAGGAGGTGGTGGTCCAGAGACACTATCGGGGTCACACAGACTGTGTTCGATGgtgagtattgtggtggggctttagcacagagggggtaggtctttggcggg Alignment from GeneWise TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGCTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGC-CAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcctctaattcctttccctgaccttcttttacccttctctttcagTTATGGTTATAGAGGTCAGGATTCTCGCTCAAATCTATTTGTGCTACGCTCTGGGGAGGTCGTCTATCTTATTGCCTGTGTGGTGGTACTGTACCGGCCTGGGGGAGGCCCAGGGGGACCAGGAGGTGGTGGTCCAGAGACACTATCGGGGTCACACAGACTGTGTTCGATGgtgagtattgtggtggggctttagcacagagggggtaggtctttggcggg #### Eml3_ID2510_9 --> 0 - 0 Original Alignment CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGA-CTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaaatttatttcccagctttcctctgctctgcctcttcagCCCCTGCAGCCTGTGGTTCATACCTGGGACTCAGAAACACTCCTGAAACTACAGGAAATTGGTCCTGGGTGCTTTTGAGCGAGGTGTGGGGGCCTTGGCATTTTCAGCAGCAgtaagttgagcatgggagcatgtagcttgtgatcttgttacgttgttttt Alignment from CESAR CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGA-CTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaaatttatttcccagctttcctctgctctgcctcttcagCCCCTGCAGCCTGTGGTTCATACCTGGGACTCAGAAACACTCCTGAAACTACAGGAAATTGGTCCTGGGTGCTTTTGAGCGAGGTGTGGGGGCCTTGGCATTTTCAGCAGCAgtaagttgagcatgggagcatgtagcttgtgatcttgttacgttgttttt Alignment from Spaln_aa2Genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGACTGGGTGCC-TTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaaatttatttcccagctttcctctgctctgcctcttcagCCCCTGCAGCCTGTGGTTCATACCTGGGACTCAGAAACACTCCTGAAACTACAGGAAATTGGTCCTGGGTGCtTTTGAGCGAGGTGTGGGGGCCTTGGCATTTTCAGCAGCAgtaagttgagcatgggagcatgtagcttgtgatcttgttacgttgttttt Alignment from Spaln_nt2Genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGAC-TGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaaatttatttcccagctttcctctgctctgcctcttcagCCCCTGCAGCCTGTGGTTCATACCTGGGACTCAGAAACACTCCTGAAACTACAGGAAATTGGTCCTGGGTGCTTTTGAGCGAGGTGTGGGGGCCTTGGCATTTTCAGCAGCAgtaagttgagcatgggagcatgtagcttgtgatcttgttacgttgttttt Alignment from Pairagon CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGG-ACTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaaatttatttcccagctttcctctgctctgcctcttcagCCCCTGCAGCCTGTGGTTCATACCTGGGACTCAGAAACACTCCTGAAACTACAGGAAATTGGTCCTGGGTGCTTTTGAGCGAGGTGTGGGGGCCTTGGCATTTTCAGCAGCAgtaagttgagcatgggagcatgtagcttgtgatcttgttacgttgttttt Alignment from Exonerate_protein2genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGA-CTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaaatttatttcccagctttcctctgctctgcctcttcagCCCCTGCAGCCTGTGGTTCATACCTGGGACTCAGAAACACTCCTGAAACTACAGGAAATTGGTCCTGGGTGCTTTTGAGCGAGGTGTGGGGGCCTTGGCATTTTCAGCAGCAgtaagttgagcatgggagcatgtagcttgtgatcttgttacgttgttttt Alignment from Exonerate_coding2genome CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGA-CTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaaatttatttcccagctttcctctgctctgcctcttcagCCCCTGCAGCCTGTGGTTCATACCTGGGACTCAGAAACACTCCTGAAACTACAGGAAATTGGTCCTGGGTGCTTTTGAGCGAGGTGTGGGGGCCTTGGCATTTTCAGCAGCAgtaagttgagcatgggagcatgtagcttgtgatcttgttacgttgttttt Alignment from GeneWise CCCCTGCAGCCCGTGGTTCATATCTGGGACTCAGAGACACTCCTAAAACTGCAGGAGATTGGA-CTGGGTGCCTTTGAGCGAGGTGTGGGGGCCTTGGCCTTTTCAGCAGCG gattatgggtcaaatttatttcccagctttcctctgctctgcctcttcagCCCCTGCAGCCTGTGGTTCATACCTGGGACTCAGAAACACTCCTGAAACTACAGGAAATTGGTCCTGGGTGCTTTTGAGCGAGGTGTGGGGGCCTTGGCATTTTCAGCAGCAgtaagttgagcatgggagcatgtagcttgtgatcttgttacgttgttttt #### Eml3_ID2514_13 --> 2 - 0 Original Alignment agACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGAC-CGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gtcatccatgtcgtgatgcaaactcttggactccacactacctcccctagagACCTACACAATTGTGGCTCAGTCCCATGCTCATGAGGAGTGCTTCTTTGCCCTCTGTCTCCACCAGGATGGAACAGTACTGACTGGTGGTGGGTGGGATCCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtgagtcctgtcctggactctgagtctgagaagggatggggagacatggt Alignment from CESAR agACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGAC-CGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gtcatccatgtcgtgatgcaaactcttggactccacactacctcccctagagACCTACACAATTGTGGCTCAGTCCCATGCTCATGAGGAGTGCTTCTTTGCCCTCTGTCTCCACCAGGATGGAACAGTACTGACTGGTGGTGGGTGGGATCCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtgagtcctgtcctggactctgagtctgagaagggatggggagacatggt Alignment from Spaln_aa2Genome AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGAC-CGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gtcatccatgtcgtgatgcaaactcttggactccacactacctcccctagAGACCTACACAATTGTGGCTCAGTCCCATGCTCATGAGGAGTGCTTCTTTGCCCTCTGTCTCCACCAGGATGGAACAGTACTGACTGGTGGTGGGTGGGATcCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtgagtcctgtcctggactctgagtctgagaagggatggggagacatggt Alignment from Spaln_nt2Genome AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGA-CCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gtcatccatgtcgtgatgcaaactcttggactccacactacctcccctagAGACCTACACAATTGTGGCTCAGTCCCATGCTCATGAGGAGTGCTTCTTTGCCCTCTGTCTCCACCAGGATGGAACAGTACTGACTGGTGGTGGGTGGGATCCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtgagtcctgtcctggactctgagtctgagaagggatggggagacatggt Alignment from Pairagon AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGA-CCGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gtcatccatgtcgtgatgcaaactcttggactccacactacctcccctagAGACCTACACAATTGTGGCTCAGTCCCATGCTCATGAGGAGTGCTTCTTTGCCCTCTGTCTCCACCAGGATGGAACAGTACTGACTGGTGGTGGGTGGGATCCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtgagtcctgtcctggactctgagtctgagaagggatggggagacatggt Alignment from Exonerate_protein2genome AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGAC-CGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gtcatccatgtcgtgatgcaaactcttggactccacactacctcccctagAGACCTACACAATTGTGGCTCAGTCCCATGCTCATGAGGAGTGCTTCTTTGCCCTCTGTCTCCACCAGGATGGAACAGTACTGACTGGTGGTGGGTGGGATCCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtgagtcctgtcctggactctgagtctgagaagggatggggagacatggt Alignment from Exonerate_coding2genome AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGAC-CGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gtcatccatgtcgtgatgcaaactcttggactccacactacctcccctagAGACCTACACAATTGTGGCTCAGTCCCATGCTCATGAGGAGTGCTTCTTTGCCCTCTGTCTCCACCAGGATGGAACAGTACTGACTGGTGGTGGGTGGGATCCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtgagtcctgtcctggactctgagtctgagaagggatggggagacatggt Alignment from GeneWise AGACCTACACGATCGTGGCCCAGGCCCATGCTCACGAGGGGTCCATCTTTGCCCTGTGTCTCCGCCGGGATGGGACAGTGCTGAGTGGTGGTGGGCGGGAC-CGACGACTGGTGCAGTGGGGGCCCGGGTTGGTGGCCCTCCAGGAGGCAGAG gtcatccatgtcgtgatgcaaactcttggactccacactacctcccctagAGACCTACACAATTGTGGCTCAGTCCCATGCTCATGAGGAGTGCTTCTTTGCCCTCTGTCTCCACCAGGATGGAACAGTACTGACTGGTGGTGGGTGGGATCCGACGACTGGTGCAGTGGGGGCCTGGGTTGGTGGCCCTCCAGGAGGCAGAGgtgagtcctgtcctggactctgagtctgagaagggatggggagacatggt #### Eml3_ID2517_16 --> 0 - 2 Original Alignment GAGACGGGTTTATGTGCTGACTTCCACCCAAGTGGGGCAGTT-GTGGTTGTAGGACTGAACACAGGGag cccctaaacacttaagaaggcccaatccgtttgctcttttctttggacagGAGACAGGTTTATGTGCTGACTTCCACCCAAGTGGGGCAGTTCGTGGTCGTAGGACTGAACACAGGGaggtaagagagtggtgaccttggaagacaatgagggggatccagggatgacc Alignment from CESAR GAGACGGGTTTATGTGCTGACTTCCACCCAAGTGGGGCAGTT-GTGGTTGTAGGACTGAACACAGGGag cccctaaacacttaagaaggcccaatccgtttgctcttttctttggacagGAGACAGGTTTATGTGCTGACTTCCACCCAAGTGGGGCAGTTCGTGGTCGTAGGACTGAACACAGGGaggtaagagagtggtgaccttggaagacaatgagggggatccagggatgacc Alignment from Spaln_aa2Genome GAGACGGGTTTATGTGCTGACTTCCACCCAAGTGGGGCAGTT-GTGGTTGTAGGACTGAACACAGGGAG cccctaaacacttaagaaggcccaatccgtttgctcttttctttggacagGAGACAGGTTTATGTGCTGACTTCCACCCAAGTGGGGCAGTTcGTGGTCGTAGGACTGAACACAGGGAGgtaagagagtggtgaccttggaagacaatgagggggatccagggatgacc Alignment from Spaln_nt2Genome GAGACGGGTTTATGTGCTGACTTCCACCCAAGTGGGGCAGTT-GTGGTTGTAGGACTGAACACAGGGAG cccctaaacacttaagaaggcccaatccgtttgctcttttctttggacagGAGACAGGTTTATGTGCTGACTTCCACCCAAGTGGGGCAGTTCGTGGTCGTAGGACTGAACACAGGGAGgtaagagagtggtgaccttggaagacaatgagggggatccagggatgacc Alignment from Pairagon GAGACGGGTTTATGTGCTGACTTCCACCCAAGTGGGGCAGTT-GTGGTTGTAGGACTGAACACAGGGAG cccctaaacacttaagaaggcccaatccgtttgctcttttctttggacagGAGACAGGTTTATGTGCTGACTTCCACCCAAGTGGGGCAGTTCGTGGTCGTAGGACTGAACACAGGGAGgtaagagagtggtgaccttggaagacaatgagggggatccagggatgacc Alignment from Exonerate_protein2genome GAGACGGGTTTATGTGCTGACTTCCACCCAAGTGGGGCAGTT-GTGGTTGTAGGACTGAACACAGGGAG cccctaaacacttaagaaggcccaatccgtttgctcttttctttggacagGAGACAGGTTTATGTGCTGACTTCCACCCAAGTGGGGCAGTTCGTGGTCGTAGGACTGAACACAGGGAGgtaagagagtggtgaccttggaagacaatgagggggatccagggatgacc Alignment from Exonerate_coding2genome GAGACGGGTTTATGTGCTGACTTCCACCCAAGTGGGGCAGTT-GTGGTTGTAGGACTGAACACAGGGAG cccctaaacacttaagaaggcccaatccgtttgctcttttctttggacagGAGACAGGTTTATGTGCTGACTTCCACCCAAGTGGGGCAGTTCGTGGTCGTAGGACTGAACACAGGGAGgtaagagagtggtgaccttggaagacaatgagggggatccagggatgacc Alignment from GeneWise GAGACGGGTTTATGTGCTGACTTCCACCCAAGTGGGGCAGTT-GTGGTTGTAGGACTGAACACAGGGAG cccctaaacacttaagaaggcccaatccgtttgctcttttctttggacagGAGACAGGTTTATGTGCTGACTTCCACCCAAGTGGGGCAGTTCGTGGTCGTAGGACTGAACACAGGGAGgtaagagagtggtgaccttggaagacaatgagggggatccagggatgacc #### Eml3_ID2522_21 --> 2 - 0 Original Alignment gtGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAAGTACACCTCTTTCAGTAC-CCATGTGCTCGAGCCAAG agaagattaaagggatgcaataaaagtgcagattccctaccattatccaggtGTATGGCCTGGTGGCTGCGATGGTACGGACATCAATTCCCTATGCCATTCCCACAATGAACGGGTGGTAGCTGTGGCAGATGATTGCTGTAAAGTGCATGTCTTTCAGTATCCCATGTGCTCGGGCCAAAgtagagctccatgagcccattgggcccaggtacgaacagttgcagttcct Alignment from CESAR gtGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAAGTACACCTCTTTCAGTAC-CCATGTGCTCGAGCCAAG agaagattaaagggatgcaataaaagtgcagattccctaccattatccaggtGTATGGCCTGGTGGCTGCGATGGTACGGACATCAATTCCCTATGCCATTCCCACAATGAACGGGTGGTAGCTGTGGCAGATGATTGCTGTAAAGTGCATGTCTTTCAGTATCCCATGTGCTCGGGCCAAAgtagagctccatgagcccattgggcccaggtacgaacagttgcagttcct Alignment from Spaln_aa2Genome GTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAAGTACACCTCTTTCAGTAC-CCATGTGCTCGAGCCAAG agaagattaaagggatgcaataaaagtgcagattccctaccattatccagGTGTATGGCCTGGTGGCTGCGATGGTACGGACATCAATTCCCTATGCCATTCCCACAATGAACGGGTGGTAGCTGTGGCAGATGATTGCTGTAAAGTGCATGTCTTTCAGTATcCCATGTGCTCGGGCCAAAgtagagctccatgagcccattgggcccaggtacgaacagttgcagttcct Alignment from Spaln_nt2Genome GTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAAGTACACCTCTTTCAGTA-CCCATGTGCTCGAGCCAAG agaagattaaagggatgcaataaaagtgcagattccctaccattatccagGTGTATGGCCTGGTGGCTGCGATGGTACGGACATCAATTCCCTATGCCATTCCCACAATGAACGGGTGGTAGCTGTGGCAGATGATTGCTGTAAAGTGCATGTCTTTCAGTATCCCATGTGCTCGGGCCAAAgtagagctccatgagcccattgggcccaggtacgaacagttgcagttcct Alignment from Pairagon GTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAAGTACACCTCTTTCAGTA-CCCATGTGCTCGAGCCAAG agaagattaaagggatgcaataaaagtgcagattccctaccattatccagGTGTATGGCCTGGTGGCTGCGATGGTACGGACATCAATTCCCTATGCCATTCCCACAATGAACGGGTGGTAGCTGTGGCAGATGATTGCTGTAAAGTGCATGTCTTTCAGTATCCCATGTGCTCGGGCCAAAgtagagctccatgagcccattgggcccaggtacgaacagttgcagttcct Alignment from Exonerate_protein2genome GTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAAGTACACCTCTTTCAGTAC-CCATGTGCTCGAGCCAAG agaagattaaagggatgcaataaaagtgcagattccctaccattatccagGTGTATGGCCTGGTGGCTGCGATGGTACGGACATCAATTCCCTATGCCATTCCCACAATGAACGGGTGGTAGCTGTGGCAGATGATTGCTGTAAAGTGCATGTCTTTCAGTATCCCATGTGCTCGGGCCAAAgtagagctccatgagcccattgggcccaggtacgaacagttgcagttcct Alignment from Exonerate_coding2genome GTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAAGTACACCTCTTTCAGTAC-CCATGTGCTCGAGCCAAG agaagattaaagggatgcaataaaagtgcagattccctaccattatccagGTGTATGGCCTGGTGGCTGCGATGGTACGGACATCAATTCCCTATGCCATTCCCACAATGAACGGGTGGTAGCTGTGGCAGATGATTGCTGTAAAGTGCATGTCTTTCAGTATCCCATGTGCTCGGGCCAAAgtagagctccatgagcccattgggcccaggtacgaacagttgcagttcct Alignment from GeneWise GTGTGTGGCCTGATGGCTCTGATGGGACAGACATCAACTCCCTTTGCCGCTCCCACAATGAACGGGTGGTGGCTGTGGCAGACGACTTCTGCAAAGTACACCTCTTTCAGTAC-CCATGTGCTCGAGCCAAG agaagattaaagggatgcaataaaagtgcagattccctaccattatccagGTGTATGGCCTGGTGGCTGCGATGGTACGGACATCAATTCCCTATGCCATTCCCACAATGAACGGGTGGTAGCTGTGGCAGATGATTGCTGTAAAGTGCATGTCTTTCAGTATCCCATGTGCTCGGGCCAAAgtagagctccatgagcccattgggcccaggtacgaacagttgcagttcct #### Eno4_ID12833_5 --> 2 - 0 Original Alignment gaCGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCC-CCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG tttctaacactccctggaaaagattagatctctctctctctctcttacaggaCGGAGGGATATGCTTTTGGAGAGACCTGTGTCACCCCCCAGAGCCCCCTGAACCGGTTCTCCATGGTAGCATGGCCATAGGTGCTGTGTCACTGGCAGTGGCTAAAGCTAGCGCTACCTTGGCCAGTGATCCTCTCTACTCAGCCCTGGCATCACTGAAACAGGATCAAgtaaattaatgtcggacaccctggcaaaaggacatggtggcagtatgtgg Alignment from CESAR gaCGGAGGGATACGCTTTTGGAGAAACCTGTTTCA-CCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG tttctaacactccctggaaaagattagatctctctctctctctcttacaggaCGGAGGGATATGCTTTTGGAGAGACCTGTGTCACCCCCCAGAGCCCCCTGAACCGGTTCTCCATGGTAGCATGGCCATAGGTGCTGTGTCACTGGCAGTGGCTAAAGCTAGCGCTACCTTGGCCAGTGATCCTCTCTACTCAGCCCTGGCATCACTGAAACAGGATCAAgtaaattaatgtcggacaccctggcaaaaggacatggtggcagtatgtgg Alignment from Spaln_aa2Genome GACGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCC-CCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG tttctaacactccctggaaaagattagatctctctctctctctcttacagGACGGAGGGATATGCTTTTGGAGAGACCTGTGTCACCCcCCAGAGCCCCCTGAACCGGTTCTCCATGGTAGCATGGCCATAGGTGCTGTGTCACTGGCAGTGGCTAAAGCTAGCGCTACCTTGGCCAGTGATCCTCTCTACTCAGCCCTGGCATCACTGAAACAGGATCAAgtaaattaatgtcggacaccctggcaaaaggacatggtggcagtatgtgg Alignment from Spaln_nt2Genome GACGGAGGGATACGCTTTTGGAGAAACCTGTTTCACCCCCG-GAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG tttctaacactccctggaaaagattagatctctctctctctctcttacagGACGGAGGGATATGCTTTTGGAGAGACCTGTGTCACCCCCCAGAGCCCCCTGAACCGGTTCTCCATGGTAGCATGGCCATAGGTGCTGTGTCACTGGCAGTGGCTAAAGCTAGCGCTACCTTGGCCAGTGATCCTCTCTACTCAGCCCTGGCATCACTGAAACAGGATCAAgtaaattaatgtcggacaccctggcaaaaggacatggtggcagtatgtgg Alignment from Pairagon GACGGAGGGATACGCTTTTGGAGAAACCTGTTTCA-CCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATC---------------------------------------------------- tttctaacactccctggaaaagattagatctctctctctctctcttacagGACGGAGGGATATGCTTTTGGAGAGACCTGTGTCACCCCCCAGAGCCCCCTGAACCGGTTCTCCATGGTAGCATGGCCATAGGTGCTGTGTCACTGGCAGTGGCTAAAGCTAGCGCTACCTTGGCCAGTGATCCTCTCTACTCAGCCCTGGCATCACTGAAACAGGATCAAGTAAATTAATGTCGGACACCCTGGCAAAAGGACATGGTGGCAGTATGTGG Alignment from Exonerate_protein2genome GACGGAGGGATACGCTTTTGGAGAAACCTGTTTCA-CCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG tttctaacactccctggaaaagattagatctctctctctctctcttacagGACGGAGGGATATGCTTTTGGAGAGACCTGTGTCACCCCCCAGAGCCCCCTGAACCGGTTCTCCATGGTAGCATGGCCATAGGTGCTGTGTCACTGGCAGTGGCTAAAGCTAGCGCTACCTTGGCCAGTGATCCTCTCTACTCAGCCCTGGCATCACTGAAACAGGATCAAgtaaattaatgtcggacaccctggcaaaaggacatggtggcagtatgtgg Alignment from Exonerate_coding2genome GACGGAGGGATACGCTTTTGGAGAAACCTGTTTCA-CCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG tttctaacactccctggaaaagattagatctctctctctctctcttacagGACGGAGGGATATGCTTTTGGAGAGACCTGTGTCACCCCCCAGAGCCCCCTGAACCGGTTCTCCATGGTAGCATGGCCATAGGTGCTGTGTCACTGGCAGTGGCTAAAGCTAGCGCTACCTTGGCCAGTGATCCTCTCTACTCAGCCCTGGCATCACTGAAACAGGATCAAgtaaattaatgtcggacaccctggcaaaaggacatggtggcagtatgtgg Alignment from GeneWise GACGGAGGGATACGCTTTTGGAGAAACCTGTT-TCACCCCCGGAGCCCCCTGAACCAGTCCTCCATGGTAGCATGGCCATAGGCGCTGTGTCCCTGGCAGTGGCCAAAGCCAGCGCAACCTTGGCCAGCGATCCTCTCTACTTAACCCTGGCGTCACTGAAGCATGATCAG tttctaacactccctggaaaagattagatctctctctctctctcttacagGACGGAGGGATATGCTTTTGGAGAGACCTGTGTCACCCCCCAGAGCCCCCTGAACCGGTTCTCCATGGTAGCATGGCCATAGGTGCTGTGTCACTGGCAGTGGCTAAAGCTAGCGCTACCTTGGCCAGTGATCCTCTCTACTCAGCCCTGGCATCACTGAAACAGGATCAAgtaaattaatgtcggacaccctggcaaaaggacatggtggcagtatgtgg #### Fads1_ID2689_3 --> 0 - 0 Original Alignment AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTG-CTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG actctcttgacattggttaagtggggtaaaattgtccattttccccctagAAAGTACTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGTCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTACTTCGCATTCCACTGCCTTGATGTAGCTGCCTGGCTAACACTGTGGATCTTTGGAACTTCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtacgctttacctcttaatccaaacctcagatgccaagagaatggtctgt Alignment from CESAR AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTG-CTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG actctcttgacattggttaagtggggtaaaattgtccattttccccctagAAAGTACTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGTCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTACTTCGCATTCCACTGCCTTGATGTAGCTGCCTGGCTAACACTGTGGATCTTTGGAACTTCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtacgctttacctcttaatccaaacctcagatgccaagagaatggtctgt Alignment from Spaln_aa2Genome AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTG-CTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG actctcttgacattggttaagtggggtaaaattgtccattttccccctagAAAGTACTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGTCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTACTTCGCATTCCACTGcCTTGATGTAGCTGCCTGGCTAACACTGTGGATCTTTGGAACTTCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtacgctttacctcttaatccaaacctcagatgccaagagaatggtctgt Alignment from Spaln_nt2Genome AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTGC-TGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG actctcttgacattggttaagtggggtaaaattgtccattttccccctagAAAGTACTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGTCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTACTTCGCATTCCACTGCCTTGATGTAGCTGCCTGGCTAACACTGTGGATCTTTGGAACTTCCTTGGTGCC---CATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtacgctttacctcttaatccaaacctcagatgccaagagaatggtctgt Alignment from Pairagon AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTG-CTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG actctcttgacattggttaagtggggtaaaattgtccattttccccctagAAAGTACTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGTCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTACTTCGCATTCCACTGCCTTGATGTAGCTGCCTGGCTAACACTGTGGATCTTTGGAACTTCCTTGGTGCC---CATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtacgctttacctcttaatccaaacctcagatgccaagagaatggtctgt Alignment from Exonerate_protein2genome AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTG-CTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG actctcttgacattggttaagtggggtaaaattgtccattttccccctagAAAGTACTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGTCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTACTTCGCATTCCACTGCCTTGATGTAGCTGCCTGGCTAACACTGTGGATCTTTGGAACTTCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtacgctttacctcttaatccaaacctcagatgccaagagaatggtctgt Alignment from Exonerate_coding2genome AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATCCTGCTG-CTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG actctcttgacattggttaagtggggtaaaattgtccattttccccctagAAAGTACTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGTCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTACTTCGCATTCCACTGCCTTGATGTAGCTGCCTGGCTAACACTGTGGATCTTTGGAACTTCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtacgctttacctcttaatccaaacctcagatgccaagagaatggtctgt Alignment from GeneWise AAAGCGCTAACTGATGAATTCCGGGAGCTGCGGGCCACAGTAGAGCGAATGGGCCTCATGAAGGCCAACCACCTCTTCTTCCTGGTCTACCTGCTTCACATC-CTGCTGCTGGATGTGGCTGCCTGGCTCACCCTTTGGATCTTTGGAACTTCCTTGGTGCCCTTCATCCTCTGTGCAGTACTGCTCAGTACAGTTCAG actctcttgacattggttaagtggggtaaaattgtccattttccccctagAAAGTACTGTCCGATGAATTTCGGGAACTGCGGGCCACAGTAGAGCGAATAGGTCTCATGAAAGCTAACCATCTCTTCCTCTTGGTATACCTACTTCGCATTCCACTGCCTTGATGTAGCTGCCTGGCTAACACTGTGGATCTTTGGAACTTCCTTGGTGCCC---ATACTTTGTGCAGTATTACTCAGTACAGTTCAGgtacgctttacctcttaatccaaacctcagatgccaagagaatggtctgt #### Fads1_ID2690_4 --> 0 - 0 Original Alignment GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACC---TCGACATGGAATCACCTGCTACATCATTTTGTG-ATTGGCCACCTGAAG gagctgggtgcctacagaggtactgctgctgctgtgtttgaattccacagGGTCAGGCAGGTTGGCTACAGCATGACTTTGGGCGCTTGTCAGTCTTTGGCACCTCATCAATGTGGAATTACCTGCTGCACCATTTTGTACATTGGGCACCTGAAGgtataaaatattatcttgtccacccaagctacagttgttcgtagtttgtc Alignment from CESAR GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACA---TGGAATCACCTGCTACATCATTTTGTG-ATTGGCCACCTGAAG gagctgggtgcctacagaggtactgctgctgctgtgtttgaattccacagGGTCAGGCAGGTTGGCTACAGCATGACTTTGGGCGCTTGTCAGTCTTTGGCACCTCATCAATGTGGAATTACCTGCTGCACCATTTTGTACATTGGGCACCTGAAGgtataaaatattatcttgtccacccaagctacagttgttcgtagtttgtc Alignment from Spaln_aa2Genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACA---TGGAATCACCTGCTACATCATTTTGTG-ATTGGCCACCTGAAG gagctgggtgcctacagaggtactgctgctgctgtgtttgaattccacagGGTCAGGCAGGTTGGCTACAGCATGACTTTGGGCGCTTGTCAGTCTTTGGCACCTCATCAATGTGGAATTACCTGCTGCACCATTTTGTAcATTGGGCACCTGAAGgtataaaatattatcttgtccacccaagctacagttgttcgtagtttgtc Alignment from Spaln_nt2Genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACA---TGGAATCACCTGCTACATCATTTTGTG-ATTGGCCACCTGAAG gagctgggtgcctacagaggtactgctgctgctgtgtttgaattccacagGGTCAGGCAGGTTGGCTACAGCATGACTTTGGGCGCTTGTCAGTCTTTGGCACCTCATCAATGTGGAATTACCTGCTGCACCATTTTGTACATTGGGCACCTGAAGgtataaaatattatcttgtccacccaagctacagttgttcgtagtttgtc Alignment from Pairagon GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACA---TGGAATCACCTGCTACATCATTTTGTG-ATTGGCCACCTGAAG gagctgggtgcctacagaggtactgctgctgctgtgtttgaattccacagGGTCAGGCAGGTTGGCTACAGCATGACTTTGGGCGCTTGTCAGTCTTTGGCACCTCATCAATGTGGAATTACCTGCTGCACCATTTTGTACATTGGGCACCTGAAGgtataaaatattatcttgtccacccaagctacagttgttcgtagtttgtc Alignment from Exonerate_protein2genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACA---TGGAATCACCTGCTACATCATTTTGTG-ATTGGCCACCTGAAG gagctgggtgcctacagaggtactgctgctgctgtgtttgaattccacagGGTCAGGCAGGTTGGCTACAGCATGACTTTGGGCGCTTGTCAGTCTTTGGCACCTCATCAATGTGGAATTACCTGCTGCACCATTTTGTACATTGGGCACCTGAAGgtataaaatattatcttgtccacccaagctacagttgttcgtagtttgtc Alignment from Exonerate_coding2genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACA---TGGAATCACCTGCTACATCATTTTGTG-ATTGGCCACCTGAAG gagctgggtgcctacagaggtactgctgctgctgtgtttgaattccacagGGTCAGGCAGGTTGGCTACAGCATGACTTTGGGCGCTTGTCAGTCTTTGGCACCTCATCAATGTGGAATTACCTGCTGCACCATTTTGTACATTGGGCACCTGAAGgtataaaatattatcttgtccacccaagctacagttgttcgtagtttgtc Alignment from GeneWise GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCGACA---TGGAATCACCTGCTACATCATTTT-GTGATTGGCCACCTGAAG gagctgggtgcctacagaggtactgctgctgctgtgtttgaattccacagGGTCAGGCAGGTTGGCTACAGCATGACTTTGGGCGCTTGTCAGTCTTTGGCACCTCATCAATGTGGAATTACCTGCTGCACCATTTTGTACATTGGGCACCTGAAGgtataaaatattatcttgtccacccaagctacagttgttcgtagtttgtc #### Fads1_ID2694_8 --> 0 - 2 Original Alignment GACTTGGCCTGG-ATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCag gaatctgtaagaagggcgaagacaatgcgcagctcagactctctctacagGACTTGGCCTGGCATGCTCAGTTTCTATGCCCGCATCTTTTTAGCTTATATATCACTCCCAGGGCTGAAAGGCTTCCTGGGGCTTTTCTTCATTGTTaggtaagcatattcagtgaattatacaggtaagcctagacaccataagtaag Alignment from CESAR GACTTGGCCTGG-ATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCag gaatctgtaagaagggcgaagacaatgcgcagctcagactctctctacagGACTTGGCCTGGCATGCTCAGTTTCTATGCCCGCATCTTTTTAGCTTATATATCACTCCCAGGGCTGAAAGGCTTCCTGGGGCTTTTCTTCATTGTTaggtaagcatattcagtgaattatacaggtaagcctagacaccataagtaag Alignment from Spaln_aa2Genome GACTTGGCCTGG-ATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctgtaagaagggcgaagacaatgcgcagctcagactctctctacagGACTTGGCCTGGcATGCTCAGTTTCTATGCCCGCATCTTTTTAGCTTATATATCACTCCCAGGGCTGAAAGGCTTCCTGGGGCTTTTCTTCATTGTTAGgtaagcatattcagtgaattatacaggtaagcctagacaccataagtaag Alignment from Spaln_nt2Genome GACTTGGCCTGG-ATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctgtaagaagggcgaagacaatgcgcagctcagactctctctacagGACTTGGCCTGGCATGCTCAGTTTCTATGCCCGCATCTTTTTAGCTTATATATCACTCCCAGGGCTGAAAGGCTTCCTGGGGCTTTTCTTCATTGTTAGgtaagcatattcagtgaattatacaggtaagcctagacaccataagtaag Alignment from Pairagon GACTTGGCCTGG-ATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctgtaagaagggcgaagacaatgcgcagctcagactctctctacagGACTTGGCCTGGCATGCTCAGTTTCTATGCCCGCATCTTTTTAGCTTATATATCACTCCCAGGGCTGAAAGGCTTCCTGGGGCTTTTCTTCATTGTTAGgtaagcatattcagtgaattatacaggtaagcctagacaccataagtaag Alignment from Exonerate_protein2genome GACTTGGCCTGG-ATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctgtaagaagggcgaagacaatgcgcagctcagactctctctacagGACTTGGCCTGGCATGCTCAGTTTCTATGCCCGCATCTTTTTAGCTTATATATCACTCCCAGGGCTGAAAGGCTTCCTGGGGCTTTTCTTCATTGTTAGgtaagcatattcagtgaattatacaggtaagcctagacaccataagtaag Alignment from Exonerate_coding2genome GACTTGGCCTGG-ATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctgtaagaagggcgaagacaatgcgcagctcagactctctctacagGACTTGGCCTGGCATGCTCAGTTTCTATGCCCGCATCTTTTTAGCTTATATATCACTCCCAGGGCTGAAAGGCTTCCTGGGGCTTTTCTTCATTGTTAGgtaagcatattcagtgaattatacaggtaagcctagacaccataagtaag Alignment from GeneWise GACTTGGCCTGG-ATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTC-- gaatctgtaagaagggcgaagacaatgcgcagctcagactctctctacagGACTTGGCCTGGCATGCTCAGTTTCTATGCCCGCATCTTTTTAGCTTATATATCACTCCCAGGGCTGAAAGGCTTCCTGGGGCTTTTCTTCATTGTTAGgtaagcatattcagtgaattatacaggtaagcctagacaccataagtaag #### Fads1_ID2695_9 --> 1 - 0 Original Alignment gTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGATCAC-GACCGGAATGTGGACTGGGTCTCCACCCAG cgctcttgttatcagttctacttctcattgcttcttggtgcttgtcctaggTTTCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCTCCATGCACATTGATCCACGACCGGAATGTGGACTGGGTCTCCACCCAGgtgaggtatggtctgcccacccttgggactgaagagttcagatcatggat Alignment from CESAR gTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGAT-CACGACCGGAATGTGGACTGGGTCTCCACCCAG cgctcttgttatcagttctacttctcattgcttcttggtgcttgtcctaggTTTCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCTCCATGCACATTGATCCACGACCGGAATGTGGACTGGGTCTCCACCCAGgtgaggtatggtctgcccacccttgggactgaagagttcagatcatggat Alignment from Spaln_aa2Genome GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGAT-CACGACCGGAATGTGGACTGGGTCTCCACCCAG cgctcttgttatcagttctacttctcattgcttcttggtgcttgtcctagGTTTCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCTCCATGCACATTGATcCACGACCGGAATGTGGACTGGGTCTCCACCCAGgtgaggtatggtctgcccacccttgggactgaagagttcagatcatggat Alignment from Spaln_nt2Genome GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGAT-CACGACCGGAATGTGGACTGGGTCTCCACCCAG cgctcttgttatcagttctacttctcattgcttcttggtgcttgtcctagGTTTCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCTCCATGCACATTGATCCACGACCGGAATGTGGACTGGGTCTCCACCCAGgtgaggtatggtctgcccacccttgggactgaagagttcagatcatggat Alignment from Pairagon GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGAT-CACGACCGGAATGTGGACTGGGTCTCCACCCAG cgctcttgttatcagttctacttctcattgcttcttggtgcttgtcctagGTTTCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCTCCATGCACATTGATCCACGACCGGAATGTGGACTGGGTCTCCACCCAGgtgaggtatggtctgcccacccttgggactgaagagttcagatcatggat Alignment from Exonerate_protein2genome GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGAT-CACGACCGGAATGTGGACTGGGTCTCCACCCAG cgctcttgttatcagttctacttctcattgcttcttggtgcttgtcctagGTTTCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCTCCATGCACATTGATCCACGACCGGAATGTGGACTGGGTCTCCACCCAGgtgaggtatggtctgcccacccttgggactgaagagttcagatcatggat Alignment from Exonerate_coding2genome GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATTGAT-CACGACCGGAATGTGGACTGGGTCTCCACCCAG cgctcttgttatcagttctacttctcattgcttcttggtgcttgtcctagGTTTCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCTCCATGCACATTGATCCACGACCGGAATGTGGACTGGGTCTCCACCCAGgtgaggtatggtctgcccacccttgggactgaagagttcagatcatggat Alignment from GeneWise GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCCCCATGCACATT-GATCACGACCGGAATGTGGACTGGGTCTCCACCCAG cgctcttgttatcagttctacttctcattgcttcttggtgcttgtcctagGTTTCTGGAAAGCAACTGGTTTGTGTGGGTGACACAGATGAACCATATCTCCATGCACATTGATCCACGACCGGAATGTGGACTGGGTCTCCACCCAGgtgaggtatggtctgcccacccttgggactgaagagttcagatcatggat #### Fads3_ID2664_7 --> 2 - 0 Original Alignment ttGGCCCTCCGCTGCTCACCTTGGTGAAC-TTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG taccatttgtataacccattccccagtgtcttgcttcttctttgctacagttGGCCCTCCGCTGCTCACATTAGTGAATCTTTGAAGTTGAAAATCTGGCATACATGCTGGTATGCATGCAGTGGACTgtgaggagattgtcctcaaaatctaaggtatgattggcatatgctgttga Alignment from CESAR ttGGCCCTCCGCTGCTCACCTTGGTGAAC-TTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG taccatttgtataacccattccccagtgtcttgcttcttctttgctacagttGGCCCTCCGCTGCTCACATTAGTGAATCTTTGAAGTTGAAAATCTGGCATACATGCTGGTATGCATGCAGTGGACTgtgaggagattgtcctcaaaatctaaggtatgattggcatatgctgttga Alignment from Spaln_aa2Genome TTGGCCCTCCGCTGCTCACCTTGGTGAAC-TTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG taccatttgtataacccattccccagtgtcttgcttcttctttgctacagTTGGCCCTCCGCTGCTCACATTAGTGAATcTTTGAAGTTGAAAATCTGGCATACATGCTGGTATGCATGCAGTGGACTgtgaggagattgtcctcaaaatctaaggtatgattggcatatgctgttga Alignment from Spaln_nt2Genome TTGGCCCTCCGCTGCTCACCTTGGTGAA-CTTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG taccatttgtataacccattccccagtgtcttgcttcttctttgctacagTTGGCCCTCCGCTGCTCACATTAGTGAATCTTTGAAGTTGAAAATCTGGCATACATGCTGGTATGCATGCAGTGGACTgtgaggagattgtcctcaaaatctaaggtatgattggcatatgctgttga Alignment from Pairagon TTGGCCCTCCGCTGCTCACCTTGGTGAA-CTTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG taccatttgtataacccattccccagtgtcttgcttcttctttgctacagTTGGCCCTCCGCTGCTCACATTAGTGAATCTTTGAAGTTGAAAATCTGGCATACATGCTGGTATGCATGCAGTGGACTgtgaggagattgtcctcaaaatctaaggtatgattggcatatgctgttga Alignment from Exonerate_protein2genome TTGGCCCTCCGCTGCTCACCTTGGTGAAC-TTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG taccatttgtataacccattccccagtgtcttgcttcttctttgctacagTTGGCCCTCCGCTGCTCACATTAGTGAATCTTTGAAGTTGAAAATCTGGCATACATGCTGGTATGCATGCAGTGGACTgtgaggagattgtcctcaaaatctaaggtatgattggcatatgctgttga Alignment from Exonerate_coding2genome TTGGCCCTCCGCTGCTCACCTTGGTGAAC-TTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG taccatttgtataacccattccccagtgtcttgcttcttctttgctacagTTGGCCCTCCGCTGCTCACATTAGTGAATCTTTGAAGTTGAAAATCTGGCATACATGCTGGTATGCATGCAGTGGACTgtgaggagattgtcctcaaaatctaaggtatgattggcatatgctgttga Alignment from GeneWise TTGGCCCTCCGCTGCTCACCTTGGTG-AACTTTGAAGTTGAAAATCTGGCGTACATGCTGGTGTGCATGCAGTGGACG taccatttgtataacccattccccagtgtcttgcttcttctttgctacagTTGGCCCTCCGCTGCTCACATTAGTGAATCTTTGAAGTTGAAAATCTGGCATACATGCTGGTATGCATGCAGTGGACTgtgaggagattgtcctcaaaatctaaggtatgattggcatatgctgttga #### Fads3_ID2665_8 --> 0 - 2 Original Alignment GACTTGCTGTGGGCTGCC-AGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCag ttctggccccctaggtccccagcacaggagccttgtcaccttgctcctagGACTTACTGTGGGCTGCCCAGTTTCTACACCCACTTTTTTCTGTCCTACTCACCCTTCTATGGGGCCACTGGGACACTAATCCTCTTTGTTGCTGTCaggtataatgcaacatgctgtccacaaaaatccacttaggtcttgctgacat Alignment from CESAR GACTTGCTGTGGGCTGCC-AGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCag ttctggccccctaggtccccagcacaggagccttgtcaccttgctcctagGACTTACTGTGGGCTGCCCAGTTTCTACACCCACTTTTTTCTGTCCTACTCACCCTTCTATGGGGCCACTGGGACACTAATCCTCTTTGTTGCTGTCaggtataatgcaacatgctgtccacaaaaatccacttaggtcttgctgacat Alignment from Spaln_aa2Genome GACTTGCTGTGGGCTGCC-AGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttctggccccctaggtccccagcacaggagccttgtcaccttgctcctagGACTTACTGTGGGCTGCCcAGTTTCTACACCCACTTTTTTCTGTCCTACTCACCCTTCTATGGGGCCACTGGGACACTAATCCTCTTTGTTGCTGTCAGgtataatgcaacatgctgtccacaaaaatccacttaggtcttgctgacat Alignment from Spaln_nt2Genome GACTTGCTGTGGGCTGCC-AGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttctggccccctaggtccccagcacaggagccttgtcaccttgctcctagGACTTACTGTGGGCTGCCCAGTTTCTACACCCACTTTTTTCTGTCCTACTCACCCTTCTATGGGGCCACTGGGACACTAATCCTCTTTGTTGCTGTCAGgtataatgcaacatgctgtccacaaaaatccacttaggtcttgctgacat Alignment from Pairagon GACTTGCTGTGGGCTG-CCAGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttctggccccctaggtccccagcacaggagccttgtcaccttgctcctagGACTTACTGTGGGCTGCCCAGTTTCTACACCCACTTTTTTCTGTCCTACTCACCCTTCTATGGGGCCACTGGGACACTAATCCTCTTTGTTGCTGTCAGgtataatgcaacatgctgtccacaaaaatccacttaggtcttgctgacat Alignment from Exonerate_protein2genome GACTTGCTGTGGGCTGCC-AGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttctggccccctaggtccccagcacaggagccttgtcaccttgctcctagGACTTACTGTGGGCTGCCCAGTTTCTACACCCACTTTTTTCTGTCCTACTCACCCTTCTATGGGGCCACTGGGACACTAATCCTCTTTGTTGCTGTCAGgtataatgcaacatgctgtccacaaaaatccacttaggtcttgctgacat Alignment from Exonerate_coding2genome GACTTGCTGTGGGCTGCC-AGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttctggccccctaggtccccagcacaggagccttgtcaccttgctcctagGACTTACTGTGGGCTGCCCAGTTTCTACACCCACTTTTTTCTGTCCTACTCACCCTTCTATGGGGCCACTGGGACACTAATCCTCTTTGTTGCTGTCAGgtataatgcaacatgctgtccacaaaaatccacttaggtcttgctgacat Alignment from GeneWise GACTTGCTGTGGGCTGCC-AGTTTCTACTCCCGCTTTTTCTTGTCCTACTCTCCCTTCTATGGTGCCACTGGGACACTGCTCCTCTTTGTTGCTGTCAG ttctggccccctaggtccccagcacaggagccttgtcaccttgctcctagGACTTACTGTGGGCTGCCCAGTTTCTACACCCACTTTTTTCTGTCCTACTCACCCTTCTATGGGGCCACTGGGACACTAATCCTCTTTGTTGCTGTCAGgtataatgcaacatgctgtccacaaaaatccacttaggtcttgctgacat #### Fads3_ID2666_9 --> 1 - 0 Original Alignment gGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATC-CCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG actccataaactgaatcaaggatgctgtctccttggttctgatcttacaggGTGCTGGAGAGCCACTGGTTTGTGTGGATCACACAGATGAACCACATCCCCCAAGAAGATAGGCCATGAAAAACATCGGGACTGGGCAACCTCTCAGgtgagtactcttaagcctgatgtcaaaacatactagtggtggagtgactg Alignment from CESAR gGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCC-AAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG actccataaactgaatcaaggatgctgtctccttggttctgatcttacaggGTGCTGGAGAGCCACTGGTTTGTGTGGATCACACAGATGAACCACATCCCCCAAGAAGATAGGCCATGAAAAACATCGGGACTGGGCAACCTCTCAGgtgagtactcttaagcctgatgtcaaaacatactagtggtggagtgactg Alignment from Spaln_aa2Genome GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAG-ATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG actccataaactgaatcaaggatgctgtctccttggttctgatcttacagGGTGCTGGAGAGCCACTGGTTTGTGTGGATCACACAGATGAACCACATCCCCCAAGAAgATAGGCCATGAAAAACATCGGGACTGGGCAACCTCTCAGgtgagtactcttaagcctgatgtcaaaacatactagtggtggagtgactg Alignment from Spaln_nt2Genome GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCC-CAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG actccataaactgaatcaaggatgctgtctccttggttctgatcttacagGGTGCTGGAGAGCCACTGGTTTGTGTGGATCACACAGATGAACCACATCCCCCAAGAAGATAGGCCATGAAAAACATCGGGACTGGGCAACCTCTCAGgtgagtactcttaagcctgatgtcaaaacatactagtggtggagtgactg Alignment from Pairagon GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACAT-CCCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG actccataaactgaatcaaggatgctgtctccttggttctgatcttacagGGTGCTGGAGAGCCACTGGTTTGTGTGGATCACACAGATGAACCACATCCCCCAAGAAGATAGGCCATGAAAAACATCGGGACTGGGCAACCTCTCAGgtgagtactcttaagcctgatgtcaaaacatactagtggtggagtgactg Alignment from Exonerate_protein2genome GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATC-CCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG actccataaactgaatcaaggatgctgtctccttggttctgatcttacagGGTGCTGGAGAGCCACTGGTTTGTGTGGATCACACAGATGAACCACATCCCCCAAGAAGATAGGCCATGAAAAACATCGGGACTGGGCAACCTCTCAGgtgagtactcttaagcctgatgtcaaaacatactagtggtggagtgactg Alignment from Exonerate_coding2genome GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATC-CCCAAGGAGATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG actccataaactgaatcaaggatgctgtctccttggttctgatcttacagGGTGCTGGAGAGCCACTGGTTTGTGTGGATCACACAGATGAACCACATCCCCCAAGAAGATAGGCCATGAAAAACATCGGGACTGGGCAACCTCTCAGgtgagtactcttaagcctgatgtcaaaacatactagtggtggagtgactg Alignment from GeneWise GGTGCTGGAGAGCCACTGGTTCGTGTGGATCACGCAGATGAACCACATCCCCAAGGAG-ATTGGCCATGAAAAGCATCGGGACTGGGCAAGCTCTCAG actccataaactgaatcaaggatgctgtctccttggttctgatcttacagGGTGCTGGAGAGCCACTGGTTTGTGTGGATCACACAGATGAACCACATCCCCCAAGAAGATAGGCCATGAAAAACATCGGGACTGGGCAACCTCTCAGgtgagtactcttaagcctgatgtcaaaacatactagtggtggagtgactg #### Fads3_ID2667_10 --> 0 - 2 Original Alignment CTGGCAGCCACCTGC-AATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACca gccaaggtagcaaacaagttgtctccatagcatctccttctgtcccacagTTGGCAGCCACCTGCCAATGTTGATTCATCACTTTTCATTGACTGGTTCAGTGGTCACCTCAATTTTCAAATTGAGCACtagtgagtatggcatggaggggttagtggtgggatccaaacctagagctaag Alignment from CESAR CTGGCAGCCACCTGC-AATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACca gccaaggtagcaaacaagttgtctccatagcatctccttctgtcccacagTTGGCAGCCACCTGCCAATGTTGATTCATCACTTTTCATTGACTGGTTCAGTGGTCACCTCAATTTTCAAATTGAGCACtagtgagtatggcatggaggggttagtggtgggatccaaacctagagctaag Alignment from Spaln_aa2Genome CTGGCAGCCACCTGC-AATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gccaaggtagcaaacaagttgtctccatagcatctccttctgtcccacagTTGGCAGCCACCTGCcAATGTTGATTCATCACTTTTCATTGACTGGTTCAGTGGTCACCTCAATTTTCAAATTGAGCACTAgtgagtatggcatggaggggttagtggtgggatccaaacctagagctaag Alignment from Spaln_nt2Genome CTGGCAGCCACCTGC-AATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gccaaggtagcaaacaagttgtctccatagcatctccttctgtcccacagTTGGCAGCCACCTGCCAATGTTGATTCATCACTTTTCATTGACTGGTTCAGTGGTCACCTCAATTTTCAAATTGAGCACTAgtgagtatggcatggaggggttagtggtgggatccaaacctagagctaag Alignment from Pairagon CTGGCAGCCACCTG-CAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gccaaggtagcaaacaagttgtctccatagcatctccttctgtcccacagTTGGCAGCCACCTGCCAATGTTGATTCATCACTTTTCATTGACTGGTTCAGTGGTCACCTCAATTTTCAAATTGAGCACTAgtgagtatggcatggaggggttagtggtgggatccaaacctagagctaag Alignment from Exonerate_protein2genome CTGGCAGCCACCTGC-AATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gccaaggtagcaaacaagttgtctccatagcatctccttctgtcccacagTTGGCAGCCACCTGCCAATGTTGATTCATCACTTTTCATTGACTGGTTCAGTGGTCACCTCAATTTTCAAATTGAGCACTAgtgagtatggcatggaggggttagtggtgggatccaaacctagagctaag Alignment from Exonerate_coding2genome CTGGCAGCCACCTGC-AATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gccaaggtagcaaacaagttgtctccatagcatctccttctgtcccacagTTGGCAGCCACCTGCCAATGTTGATTCATCACTTTTCATTGACTGGTTCAGTGGTCACCTCAATTTTCAAATTGAGCACTAgtgagtatggcatggaggggttagtggtgggatccaaacctagagctaag Alignment from GeneWise CTGGCAGCCACCTGCAATGTGGAACCTTCGCTCTTCATTGACTGGTTCAGCGGGCACCTCAATTTCCAGATTGAGCACCA gccaaggtagcaaacaagttgtctccatagcatctccttctgtcccacagttggcagCCACCTGCC------AATGTTGATTCATCACTTTTCATTGACTGGTTCAGTGGTCACCTCAATTTTCAAATTGAGCACTAgtgagtatggcatggaggggttagtggtgggatccaaacctagagctaag #### Fam160b1_ID12353_4 --> 0 - 0 Original Alignment TGCCCTCCAGGAATGAAGCAGCAG-GTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactccacacctttgactacattctttcattctactttatcaatagTGCCCTCCAGGAATGAAACAGCAGCGTGTTAGTACTTTATACCAAACTTCTTGAGCGAATCCAGCGACCACTACTCCCACATGTCAATGTGCACAGGCCGGTGCAGgtgagtaagtataaacatagtggggaacaatattatagtatagcatcaaa Alignment from CESAR TGCCCTCCAGGAATGAAGCAGCAG-GTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactccacacctttgactacattctttcattctactttatcaatagTGCCCTCCAGGAATGAAACAGCAGCGTGTTAGTACTTTATACCAAACTTCTTGAGCGAATCCAGCGACCACTACTCCCACATGTCAATGTGCACAGGCCGGTGCAGgtgagtaagtataaacatagtggggaacaatattatagtatagcatcaaa Alignment from Spaln_aa2Genome TGCCCTCCAGGAATGAAGCAGCAG-GTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactccacacctttgactacattctttcattctactttatcaatagTGCCCTCCAGGAATGAAACAGCAGcGTGTTAGTACTTTATACCAAACTTCTTGAGCGAATCCAGCGACCACTACTCCCACATGTCAATGTGCACAGGCCGGTGCAGgtgagtaagtataaacatagtggggaacaatattatagtatagcatcaaa Alignment from Spaln_nt2Genome TGCCCTCCAGGAATGAAGCAGCAG-GTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactccacacctttgactacattctttcattctactttatcaatagTGCCCTCCAGGAATGAAACAGCAGCGTGTTAGTACTTTATACCAAACTTCTTGAGCGAATCCAGCGACCACTACTCCCACATGTCAATGTGCACAGGCCGGTGCAGgtgagtaagtataaacatagtggggaacaatattatagtatagcatcaaa Alignment from Pairagon TGCCCTCCAGGAATGAAGCAGCAG-GTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactccacacctttgactacattctttcattctactttatcaatagTGCCCTCCAGGAATGAAACAGCAGCGTGTTAGTACTTTATACCAAACTTCTTGAGCGAATCCAGCGACCACTACTCCCACATGTCAATGTGCACAGGCCGGTGCAGgtgagtaagtataaacatagtggggaacaatattatagtatagcatcaaa Alignment from Exonerate_protein2genome TGCCCTCCAGGAATGAAGCAGCAG-GTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactccacacctttgactacattctttcattctactttatcaatagTGCCCTCCAGGAATGAAACAGCAGCGTGTTAGTACTTTATACCAAACTTCTTGAGCGAATCCAGCGACCACTACTCCCACATGTCAATGTGCACAGGCCGGTGCAGgtgagtaagtataaacatagtggggaacaatattatagtatagcatcaaa Alignment from Exonerate_coding2genome gtcccactccacacctttgactacattctttcattctactttatcaatagtgccctccaggaatgaaacagcagcgtgttagtactttataccaaacttcttgagcgaatccagcgaccactactcccacatgtcaatgtgcacaggccggtgcaggtgagtaagtataaacatagtggggaacaatattatagtatagcatcaaa Alignment from GeneWise TGCCCTCCAGGAATGAAGCAGCAG-GTTTTGGTGTTCTATACCAAGCTTCTGGGACGAATCCGGCAGCCCCTGCTTCCACACATCAACGTACACAGGCCTGTGCAG gtcccactccacacctttgactacattctttcattctactttatcaatagTGCCCTCCAGGAATGAAACAGCAGCGTGTTAGTACTTTATACCAAACTTCTTGAGCGAATCCAGCGACCACTACTCCCACATGTCAATGTGCACAGGCCGGTGCAGgtgagtaagtataaacatagtggggaacaatattatagtatagcatcaaa #### Fam160b1_ID12356_7 --> 0 - 2 Original Alignment GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCC-AAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGgg tccatttatgctaaatctgacaagctccttgtatgtgaaattttcgacagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTCGATGCTCTTGGTGAGCCTACCAGAGCCCGCAGCAGCCCAAGTGCCTTGCTCAGAGCACTTGCCTGTGTGAGCTGCTGACTGGCAGACTCACCTCCCTGTACAAGTCGTTACCTCAGTCAGTGGACCCCTTGGACATTGAAACTGTGGAGGCAGTAAACTGGgggtaagaatccattctgtacatttggtgatgggtatcagggtttggtaagc Alignment from CESAR GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCC-AAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGgg tccatttatgctaaatctgacaagctccttgtatgtgaaattttcgacagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTCGATGCTCTTGGTGAGCCTACCAGAGCCCGCAGCAGCCCAAGTGCCTTGCTCAGAGCACTTGCCTGTGTGAGCTGCTGACTGGCAGACTCACCTCCCTGTACAAGTCGTTACCTCAGTCAGTGGACCCCTTGGACATTGAAACTGTGGAGGCAGTAAACTGGgggtaagaatccattctgtacatttggtgatgggtatcagggtttggtaagc Alignment from Spaln_aa2Genome GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCC-AAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG tccatttatgctaaatctgacaagctccttgtatgtgaaattttcgacagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTCGATGCTCTTGGTGAGCCTACCAGAGCCCGCAGCAGCCcAAGTGCCTTGCTCAGAGCACTTGCCTGTGTGAGCTGCTGACTGGCAGACTCACCTCCCTGTACAAGTCGTTACCTCAGTCAGTGGACCCCTTGGACATTGAAACTGTGGAGGCAGTAAACTGGGGgtaagaatccattctgtacatttggtgatgggtatcagggtttggtaagc Alignment from Spaln_nt2Genome GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTG-CCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG tccatttatgctaaatctgacaagctccttgtatgtgaaattttcgacagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTCGATGCTCTTGGTGAGCCTACCAGAGCCCGCAGCAGCCCAAGTGCCTTGCTCAGAGCACTTGCCTGTGTGAGCTGCTGACTGGCAGACTCACCTCCCTGTACAAGTCGTTACCTCAGTCAGTGGACCCCTTGGACATTGAAACTGTGGAGGCAGTAAACTGGGGgtaagaatccattctgtacatttggtgatgggtatcagggtttggtaagc Alignment from Pairagon GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTG-CCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG tccatttatgctaaatctgacaagctccttgtatgtgaaattttcgacagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTCGATGCTCTTGGTGAGCCTACCAGAGCCCGCAGCAGCCCAAGTGCCTTGCTCAGAGCACTTGCCTGTGTGAGCTGCTGACTGGCAGACTCACCTCCCTGTACAAGTCGTTACCTCAGTCAGTGGACCCCTTGGACATTGAAACTGTGGAGGCAGTAAACTGGGGgtaagaatccattctgtacatttggtgatgggtatcagggtttggtaagc Alignment from Exonerate_protein2genome GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCC-AAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG tccatttatgctaaatctgacaagctccttgtatgtgaaattttcgacagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTCGATGCTCTTGGTGAGCCTACCAGAGCCCGCAGCAGCCCAAGTGCCTTGCTCAGAGCACTTGCCTGTGTGAGCTGCTGACTGGCAGACTCACCTCCCTGTACAAGTCGTTACCTCAGTCAGTGGACCCCTTGGACATTGAAACTGTGGAGGCAGTAAACTGGGGgtaagaatccattctgtacatttggtgatgggtatcagggtttggtaagc Alignment from Exonerate_coding2genome GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCC-AAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG tccatttatgctaaatctgacaagctccttgtatgtgaaattttcgacagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTCGATGCTCTTGGTGAGCCTACCAGAGCCCGCAGCAGCCCAAGTGCCTTGCTCAGAGCACTTGCCTGTGTGAGCTGCTGACTGGCAGACTCACCTCCCTGTACAAGTCGTTACCTCAGTCAGTGGACCCCTTGGACATTGAAACTGTGGAGGCAGTAAACTGGGGgtaagaatccattctgtacatttggtgatgggtatcagggtttggtaagc Alignment from GeneWise GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCT-GCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG tccatttatgctaaatctgacaagctccttgtatgtgaaattttcgacagGATGGCCGGATAGCTGTAAAGGCTTGCAAGGGTTCGATGCTCTTGGTGAGCCTACCAGAGCCCGCAGCAGCCCAAGTGCCTTGCTCAGAGCACTTGCCTGTGTGAGCTGCTGACTGGCAGACTCACCTCCCTGTACAAGTCGTTACCTCAGTCAGTGGACCCCTTGGACATTGAAACTGTGGAGGCAGTAAACTGGGGgtaagaatccattctgtacatttggtgatgggtatcagggtttggtaagc #### Fau_ID1403_3 --> 2 - 0 Original Alignment gtAAAGTTCACGGTTCCCTGGCTCGGGCTGGA-AAAGTGAGAGGTCAGACTCCCAAG aggtgtgatttggctatttaacctgaccacttccttgcttttgtccccaggtATAGTTCATGGCTCCCTGGCCCGAGCTGGACAAAGTAAGAGGCCAGACTCCCAAAgtaagtgacaggggtgaagcttgttactgtcctttaagccagtataagca Alignment from CESAR gtAAAGTTCACGGTTCCCTGGCTCGGGCTGGA-AAAGTGAGAGGTCAGACTCCCAAG aggtgtgatttggctatttaacctgaccacttccttgcttttgtccccaggtATAGTTCATGGCTCCCTGGCCCGAGCTGGACAAAGTAAGAGGCCAGACTCCCAAAgtaagtgacaggggtgaagcttgttactgtcctttaagccagtataagca Alignment from Spaln_aa2Genome GTAAAGTTCACGGTTCCCTGGCTCGGGCTGGA-AAAGTGAGAGGTCAGACTCCCAAG aggtgtgatttggctatttaacctgaccacttccttgcttttgtccccagGTATAGTTCATGGCTCCCTGGCCCGAGCTGGAcAAAGTAAGAGGCCAGACTCCCAAAgtaagtgacaggggtgaagcttgttactgtcctttaagccagtataagca Alignment from Spaln_nt2Genome GTAAAGTTCACGGTTCCCTGGCTCGGGCTGGA-AAAGTGAGAGGTCAGACTCCCAAG aggtgtgatttggctatttaacctgaccacttccttgcttttgtccccagGTATAGTTCATGGCTCCCTGGCCCGAGCTGGACAAAGTAAGAGGCCAGACTCCCAAAgtaagtgacaggggtgaagcttgttactgtcctttaagccagtataagca Alignment from Pairagon GTAAAGTTCACGGTTCCCTGGCTCGGGCTGGA-AAAGTGAGAGGTCAGACTCCCAAG aggtgtgatttggctatttaacctgaccacttccttgcttttgtccccagGTATAGTTCATGGCTCCCTGGCCCGAGCTGGACAAAGTAAGAGGCCAGACTCCCAAAgtaagtgacaggggtgaagcttgttactgtcctttaagccagtataagca Alignment from Exonerate_protein2genome GTAAAGTTCACGGTTCCCTGGCTCGGGCTGGA-AAAGTGAGAGGTCAGACTCCCAAG aggtgtgatttggctatttaacctgaccacttccttgcttttgtccccagGTATAGTTCATGGCTCCCTGGCCCGAGCTGGACAAAGTAAGAGGCCAGACTCCCAAAgtaagtgacaggggtgaagcttgttactgtcctttaagccagtataagca Alignment from Exonerate_coding2genome aggtgtgatttggctatttaacctgaccacttccttgcttttgtccccaggtatagttcatggctccctggcccgagctggacaaagtaagaggccagactcccaaagtaagtgacaggggtgaagcttgttactgtcctttaagccagtataagca Alignment from GeneWise GTAAAGTTCACGGTTCCCTGGCTCGGGCTGGA-AAAGTGAGAGGTCAGACTCCCAAG aggtgtgatttggctatttaacctgaccacttccttgcttttgtccccagGTATAGTTCATGGCTCCCTGGCCCGAGCTGGACAAAGTAAGAGGCCAGACTCCCAAAgtaagtgacaggggtgaagcttgttactgtcctttaagccagtataagca #### Fbxl15_ID9850_2 --> 1 - 0 Original Alignment gCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTG-CGCCGCTTCGACGCCGCTCAG tacactgtaaatgcacttatcttgcaggcagctgtccctccccgcttaagaCTCCTAGATCTGCCTTGGGAAGATTTGCTGCTCCTGCATGTCCTAAACTGGGTCCCACTACGTCAACTGCTCCGGCTGCAGCAGGTGAGTAGAGCCTTTGGGGCACTTATTCAGTTGCATTTGGCCAGGTTGCCGCCGCTTTGATGCTGCTCAGgtaagatggtgattgggggtgcccttgtccctgtgctgctttgataccaa Alignment from CESAR gCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTG-CGCCGCTTCGACGCCGCTCAG tacactgtaaatgcacttatcttgcaggcagctgtccctccccgcttaagaCTCCTAGATCTGCCTTGGGAAGATTTGCTGCTCCTGCATGTCCTAAACTGGGTCCCACTACGTCAACTGCTCCGGCTGCAGCAGGTGAGTAGAGCCTTTGGGGCACTTATTCAGTTGCATTTGGCCAGGTTGCCGCCGCTTTGATGCTGCTCAGgtaagatggtgattgggggtgcccttgtccctgtgctgctttgataccaa Alignment from Spaln_aa2Genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTG-CGCCGCTTCGACGCCGCTCAG tacactgtaaatgcacttatcttgcaggcagctgtccctccccgcttaagACTCCTAGATCTGCCTTGGGAAGATTTGCTGCTCCTGCATGTCCTAAACTGGGTCCCACTACGTCAACTGCTCCGGCTGCAGCAGGTGAGTAGAGCCTTTGGGGCACTTATTCAGTTGCATTTGGCCAGGTTGcCGCCGCTTTGATGCTGCTCAGgtaagatggtgattgggggtgcccttgtccctgtgctgctttgataccaa Alignment from Spaln_nt2Genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGC-GCCGCTTCGACGCCGCTCAG tacactgtaaatgcacttatcttgcaggcagctgtccctccccgcttaagACTCCTAGATCTGCCTTGGGAAGATTTGCTGCTCCTGCATGTCCTAAACTGGGTCCCACTACGTCAACTGCTCCGGCTGCAGCAGGTGAGTAGAGCCTTTGGGGCACTTATTCAGTTGCATTTGGCCAGGTTGCCGCCGCTTTGATGCTGCTCAGgtaagatggtgattgggggtgcccttgtccctgtgctgctttgataccaa Alignment from Pairagon GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTG-CGCCGCTTCGACGCCGCTCAG tacactgtaaatgcacttatcttgcaggcagctgtccctccccgcttaagACTCCTAGATCTGCCTTGGGAAGATTTGCTGCTCCTGCATGTCCTAAACTGGGTCCCACTACGTCAACTGCTCCGGCTGCAGCAGGTGAGTAGAGCCTTTGGGGCACTTATTCAGTTGCATTTGGCCAGGTTGCCGCCGCTTTGATGCTGCTCAGgtaagatggtgattgggggtgcccttgtccctgtgctgctttgataccaa Alignment from Exonerate_protein2genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTG-CGCCGCTTCGACGCCGCTCAG tacactgtaaatgcacttatcttgcaggcagctgtccctccccgcttaagACTCCTAGATCTGCCTTGGGAAGATTTGCTGCTCCTGCATGTCCTAAACTGGGTCCCACTACGTCAACTGCTCCGGCTGCAGCAGGTGAGTAGAGCCTTTGGGGCACTTATTCAGTTGCATTTGGCCAGGTTGCCGCCGCTTTGATGCTGCTCAGgtaagatggtgattgggggtgcccttgtccctgtgctgctttgataccaa Alignment from Exonerate_coding2genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTG-CGCCGCTTCGACGCCGCTCAG tacactgtaaatgcacttatcttgcaggcagctgtccctccccgcttaagACTCCTAGATCTGCCTTGGGAAGATTTGCTGCTCCTGCATGTCCTAAACTGGGTCCCACTACGTCAACTGCTCCGGCTGCAGCAGGTGAGTAGAGCCTTTGGGGCACTTATTCAGTTGCATTTGGCCAGGTTGCCGCCGCTTTGATGCTGCTCAGgtaagatggtgattgggggtgcccttgtccctgtgctgctttgataccaa Alignment from GeneWise GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGG-CTGCGCCGCTTCGACGCCGCTCAG tacactgtaaatgcacttatcttgcaggcagctgtccctccccgcttaagACTCCTAGATCTGCCTTGGGAAGATTTGCTGCTCCTGCATGTCCTAAACTGGGTCCCACTACGTCAACTGCTCCGGCTGCAGCAGGTGAGTAGAGCCTTTGGGGCACTTATTCAGTTGCATTTGGCCAGGTTGCCGCCGCTTTGATGCTGCTCAGgtaagatggtgattgggggtgcccttgtccctgtgctgctttgataccaa #### Fgf8_ID9567_2 --> 1 - 0 Original Alignment gCTGTTGCACTTGCTG-GTTCTCTGCCTCCAAGCCCAG gccccatctgctccttgagcctcttcccacccagtgtccctggcttgcagaCTTCTGCAATTGTTGCGTTTTCTGCCTCCAGGCCCAAgtaggtagtgcactcaagtgatgagtggaaatcaggaagcgtagggacag Alignment from CESAR gCTGTTGCACTTGCTG-GTTCTCTGCCTCCAAGCCCAG gccccatctgctccttgagcctcttcccacccagtgtccctggcttgcagaCTTCTGCAATTGTTGCGTTTTCTGCCTCCAGGCCCAAgtaggtagtgcactcaagtgatgagtggaaatcaggaagcgtagggacag Alignment from Spaln_aa2Genome GCTGTTGCACTTGCTG-GTTCTCTGCCTCCAAGCCCAG gccccatctgctccttgagcctcttcccacccagtgtccctggcttgcagACTTCTGCAATTGTTGcGTTTTCTGCCTCCAGGCCCAAgtaggtagtgcactcaagtgatgagtggaaatcaggaagcgtagggacag Alignment from Spaln_nt2Genome GCTGTTGCACTTGCTG-GTTCTCTGCCTCCAAGCCCAG gccccatctgctccttgagcctcttcccacccagtgtccctggcttgcagACTTCTGCAATTGTTGCGTTTTCTGCCTCCAGGCCCAAgtaggtagtgcactcaagtgatgagtggaaatcaggaagcgtagggacag Alignment from Pairagon GCTGTTGCACTTGCTG-GTTCTCTGCCTCCAAGCCCAG gccccatctgctccttgagcctcttcccacccagtgtccctggcttgcagACTTCTGCAATTGTTGCGTTTTCTGCCTCCAGGCCCAAgtaggtagtgcactcaagtgatgagtggaaatcaggaagcgtagggacag Alignment from Exonerate_protein2genome GCTGTTGCACTTGCTG-GTTCTCTGCCTCCAAGCCCAG gccccatctgctccttgagcctcttcccacccagtgtccctggcttgcagACTTCTGCAATTGTTGCGTTTTCTGCCTCCAGGCCCAAgtaggtagtgcactcaagtgatgagtggaaatcaggaagcgtagggacag Alignment from Exonerate_coding2genome gccccatctgctccttgagcctcttcccacccagtgtccctggcttgcagacttctgcaattgttgcgttttctgcctccaggcccaagtaggtagtgcactcaagtgatgagtggaaatcaggaagcgtagggacag Alignment from GeneWise gccccatctgctccttgagcctcttcccacccagtgtccctggcttgcagacttctgcaattgttgcgttttctgcctccaggcccaagtaggtagtgcactcaagtgatgagtggaaatcaggaagcgtagggacag #### Fibp_ID1009_6 --> 2 - 2 Original Alignment acTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTC-CAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGag caatatccaagatgttttatgcatatgctactttttttgttcccttctagacCCTCAGGTGGATGACATGGATGTTGACTTAGATAAAGAGTTTCTCCCAAGACTTGAAGGAGCTCAAGGTTCTTGTGGCTGACAAGGACCTCCTAGACCTGGACAAGaggtgagcgtgggatacttgggagcctaggttacaacactcagtctatagaa Alignment from CESAR acTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTC-CAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGag caatatccaagatgttttatgcatatgctactttttttgttcccttctagacCCTCAGGTGGATGACATGGATGTTGACTTAGATAAAGAGTTTCTCCCAAGACTTGAAGGAGCTCAAGGTTCTTGTGGCTGACAAGGACCTCCTAGACCTGGACAAGaggtgagcgtgggatacttgggagcctaggttacaacactcagtctatagaa Alignment from Spaln_aa2Genome ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTC-CAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG caatatccaagatgttttatgcatatgctactttttttgttcccttctagACCCTCAGGTGGATGACATGGATGTTGACTTAGATAAAGAGTTTCTCcCAAGACTTGAAGGAGCTCAAGGTTCTTGTGGCTGACAAGGACCTCCTAGACCTGGACAAGAGgtgagcgtgggatacttgggagcctaggttacaacactcagtctatagaa Alignment from Spaln_nt2Genome ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTCC-AAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG caatatccaagatgttttatgcatatgctactttttttgttcccttctagACCCTCAGGTGGATGACATGGATGTTGACTTAGATAAAGAGTTTCTCCCAAGACTTGAAGGAGCTCAAGGTTCTTGTGGCTGACAAGGACCTCCTAGACCTGGACAAGAGgtgagcgtgggatacttgggagcctaggttacaacactcagtctatagaa Alignment from Pairagon ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCT-CCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG caatatccaagatgttttatgcatatgctactttttttgttcccttctagACCCTCAGGTGGATGACATGGATGTTGACTTAGATAAAGAGTTTCTCCCAAGACTTGAAGGAGCTCAAGGTTCTTGTGGCTGACAAGGACCTCCTAGACCTGGACAAGAGgtgagcgtgggatacttgggagcctaggttacaacactcagtctatagaa Alignment from Exonerate_protein2genome ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTC-CAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG caatatccaagatgttttatgcatatgctactttttttgttcccttctagACCCTCAGGTGGATGACATGGATGTTGACTTAGATAAAGAGTTTCTCCCAAGACTTGAAGGAGCTCAAGGTTCTTGTGGCTGACAAGGACCTCCTAGACCTGGACAAGAGgtgagcgtgggatacttgggagcctaggttacaacactcagtctatagaa Alignment from Exonerate_coding2genome ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTTCTC-CAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG caatatccaagatgttttatgcatatgctactttttttgttcccttctagACCCTCAGGTGGATGACATGGATGTTGACTTAGATAAAGAGTTTCTCCCAAGACTTGAAGGAGCTCAAGGTTCTTGTGGCTGACAAGGACCTCCTAGACCTGGACAAGAGgtgagcgtgggatacttgggagcctaggttacaacactcagtctatagaa Alignment from GeneWise ACTCTCAGGTGGACGACATGGATGTGGACTTAGATAAGGAGTTT-CTCCAAGACTTGAAGGAGCTCAAGGTTCTCGTGGCTGACAAGGACCTCCTGGACCTGCATAAGAG caatatccaagatgttttatgcatatgctactttttttgttcccttctagACCCTCAGGTGGATGACATGGATGTTGACTTAGATAAAGAGTTTCTCCCAAGACTTGAAGGAGCTCAAGGTTCTTGTGGCTGACAAGGACCTCCTAGACCTGGACAAGAGgtgagcgtgggatacttgggagcctaggttacaacactcagtctatagaa #### Fibp_ID1011_8 --> 0 - 0 Original Alignment AATCTGTCTCGG-GGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccacatgaaaagcaggaggcagaaccagtgaggttttcttcattccagAATCTGTCTAGACGGTCTGGTGAATGTGGCTGCCAAG------TGCAATAAGGATGTCAGAGTCTTATTCGTAGACCTTTTGGAGAGGgtgagtagtgcttagatgtgtggcagtcacgggaccagtggcagtgcttg Alignment from CESAR AATCTGTCTCGG-GGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccacatgaaaagcaggaggcagaaccagtgaggttttcttcattccagAATCTGTCTAGACGGTCTGGTGAATGTGGCTGCCAAG------TGCAATAAGGATGTCAGAGTCTTATTCGTAGACCTTTTGGAGAGGgtgagtagtgcttagatgtgtggcagtcacgggaccagtggcagtgcttg Alignment from Spaln_aa2Genome AATCTGTCTCGG-GGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccacatgaaaagcaggaggcagaaccagtgaggttttcttcattccagAATCTGTCTAGAcGGTCTGGTGAATGTGGCTGCCAAG------TGCAATAAGGATGTCAGAGTCTTATTCGTAGACCTTTTGGAGAGGgtgagtagtgcttagatgtgtggcagtcacgggaccagtggcagtgcttg Alignment from Spaln_nt2Genome AATCTGTCTCGGGGG-CTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccacatgaaaagcaggaggcagaaccagtgaggttttcttcattccagAATCTGTCTAGACGGTCTGGTGAATGTGGCTGCCAAG-TG-----CAATAAGGATGTCAGAGTCTTATTCGTAGACCTTTTGGAGAGGgtgagtagtgcttagatgtgtggcagtcacgggaccagtggcagtgcttg Alignment from Pairagon AATCTGTCTCGGGGG-CTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccacatgaaaagcaggaggcagaaccagtgaggttttcttcattccagAATCTGTCTAGACGGTCTGGTGAATGTGGCTGCCAAG------TGCAATAAGGATGTCAGAGTCTTATTCGTAGACCTTTTGGAGAGGgtgagtagtgcttagatgtgtggcagtcacgggaccagtggcagtgcttg Alignment from Exonerate_protein2genome AATCTGTCTCGG-GGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccacatgaaaagcaggaggcagaaccagtgaggttttcttcattccagAATCTGTCTAGACGGTCTGGTGAATGTGGCTGCCAAGTGC------AATAAGGATGTCAGAGTCTTATTCGTAGACCTTTTGGAGAGGgtgagtagtgcttagatgtgtggcagtcacgggaccagtggcagtgcttg Alignment from Exonerate_coding2genome AATCTGTCTCGG-GGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccacatgaaaagcaggaggcagaaccagtgaggttttcttcattccagAATCTGTCTAGACGGTCTGGTGAATGTGGCTGCCAAGTGC------AATAAGGATGTCAGAGTCTTATTCGTAGACCTTTTGGAGAGGgtgagtagtgcttagatgtgtggcagtcacgggaccagtggcagtgcttg Alignment from GeneWise AATCTGTCT-CGGGGGCTGGTGAACGTGGCTGCCAAGCTGACCCACAATAAGGATGTCAGAGACCTATTTGTGGACCTCGTGGAGAAG gcccacatgaaaagcaggaggcagaaccagtgaggttttcttcattccagAATCTGTCTAGACGGTCTGGTGAATGTGGCTGCCAAGTGC------AATAAGGATGTCAGAGTCTTATTCGTAGACCTTTTGGAGAGGgtgagtagtgcttagatgtgtggcagtcacgggaccagtggcagtgcttg #### Fkbp2_ID1946_3 --> 1 - 1 Original Alignment gATGTGTGAAGGGGAAAAG-CGGAAGTTGGTGATCCCATCCGAGCTGg gttgcctgttggcttgcatgttttaagtgccttgtccccttgacctacaggATGTGTGAAGGAGAAAGGCCGGAAGTTGGTCATCCTGTCAGAGCTGggtaggtgagcatagtggccagaaccaatctggagaagacttaaataaccc Alignment from CESAR gATGTGTGAAGGGGAAAAG-CGGAAGTTGGTGATCCCATCCGAGCTGg gttgcctgttggcttgcatgttttaagtgccttgtccccttgacctacaggATGTGTGAAGGAGAAAGGCCGGAAGTTGGTCATCCTGTCAGAGCTGggtaggtgagcatagtggccagaaccaatctggagaagacttaaataaccc Alignment from Spaln_aa2Genome GATGTGTGAAGGGGAAAAG-CGGAAGTTGGTGATCCCATCCGAGCTGG gttgcctgttggcttgcatgttttaagtgccttgtccccttgacctacagGATGTGTGAAGGAGAAAGGcCGGAAGTTGGTCATCCTGTCAGAGCTGGgtaggtgagcatagtggccagaaccaatctggagaagacttaaataaccc Alignment from Spaln_nt2Genome GATGTGTGAAGGGGAAAAGCGGA-AGTTGGTGATCCCATCCGAGCTGG gttgcctgttggcttgcatgttttaagtgccttgtccccttgacctacagGATGTGTGAAGGAGAAAGGCCGGAAGTTGGTCATCCTGTCAGAGCTGGgtaggtgagcatagtggccagaaccaatctggagaagacttaaataaccc Alignment from Pairagon GATGTGTGAAGGGGAAAAG-CGGAAGTTGGTGATCCCATCCGAGCTGG gttgcctgttggcttgcatgttttaagtgccttgtccccttgacctacagGATGTGTGAAGGAGAAAGGCCGGAAGTTGGTCATCCTGTCAGAGCTGGgtaggtgagcatagtggccagaaccaatctggagaagacttaaataaccc Alignment from Exonerate_protein2genome GATGTGTGAAGGGGAAAAG-CGGAAGTTGGTGATCCCATCCGAGCTGG gttgcctgttggcttgcatgttttaagtgccttgtccccttgacctacagGATGTGTGAAGGAGAAAGGCCGGAAGTTGGTCATCCTGTCAGAGCTGGgtaggtgagcatagtggccagaaccaatctggagaagacttaaataaccc Alignment from Exonerate_coding2genome gttgcctgttggcttgcatgttttaagtgccttgtccccttgacctacaggatgtgtgaaggagaaaggccggaagttggtcatcctgtcagagctgggtaggtgagcatagtggccagaaccaatctggagaagacttaaataaccc Alignment from GeneWise gttgcctgttggcttgcatgttttaagtgccttgtccccttgacctacaggatgtgtgaaggagaaaggccggaagttggtcatcctgtcagagctgggtaggtgagcatagtggccagaaccaatctggagaagacttaaataaccc #### Fkbp2_ID1947_2 --> 0 - 2 Original Alignment GGAAAGCTAGAAGATGGGACG-GAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGgg gtgggacaacctctcctgactaggtgttcagcgctttgctctctatccagGGAAAGCTAGAAGATGGGACACGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATCTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGTCTACTGgggtcaggctggcctttaatccaagttgtagtgagtgctacggtaagtgggt Alignment from CESAR GGAAAGCTAGAAGATGGGACG-GAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGgg gtgggacaacctctcctgactaggtgttcagcgctttgctctctatccagGGAAAGCTAGAAGATGGGACACGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATCTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGTCTACTGgggtcaggctggcctttaatccaagttgtagtgagtgctacggtaagtgggt Alignment from Spaln_aa2Genome GGAAAGCTAGAAGATGGGACG-GAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gtgggacaacctctcctgactaggtgttcagcgctttgctctctatccagGGAAAGCTAGAAGATGGGACAcGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATCTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGTCTACTGGGgtcaggctggcctttaatccaagttgtagtgagtgctacggtaagtgggt Alignment from Spaln_nt2Genome GGAAAGCTAGAAGATGGGACG-GAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gtgggacaacctctcctgactaggtgttcagcgctttgctctctatccagGGAAAGCTAGAAGATGGGACACGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATCTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGTCTACTGGGgtcaggctggcctttaatccaagttgtagtgagtgctacggtaagtgggt Alignment from Pairagon GGAAAGCTAGAAGATGGGACG-GAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gtgggacaacctctcctgactaggtgttcagcgctttgctctctatccagGGAAAGCTAGAAGATGGGACACGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATCTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGTCTACTGGGgtcaggctggcctttaatccaagttgtagtgagtgctacggtaagtgggt Alignment from Exonerate_protein2genome GGAAAGCTAGAAGATGGGACG-GAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gtgggacaacctctcctgactaggtgttcagcgctttgctctctatccagGGAAAGCTAGAAGATGGGACACGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATCTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGTCTACTGGGgtcaggctggcctttaatccaagttgtagtgagtgctacggtaagtgggt Alignment from Exonerate_coding2genome GGAAAGCTAGAAGATGGGACG-GAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gtgggacaacctctcctgactaggtgttcagcgctttgctctctatccagGGAAAGCTAGAAGATGGGACACGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATCTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGTCTACTGGGgtcaggctggcctttaatccaagttgtagtgagtgctacggtaagtgggt Alignment from GeneWise GGAAAGCTAGAAGATGGG-ACGGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gtgggacaacctctcctgactaggtgttcagcgctttgctctctatccagGGAAAGCTAGAAGATGGGACACGAGTTTGACAGCAGCCTACCACAGAACCAGCCCTTTATCTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGTCTACTGGGgtcaggctggcctttaatccaagttgtagtgagtgctacggtaagtgggt #### Frmd8_ID1284_4 --> 2 - 0 Original Alignment atGAGCCTTCCCTTCAGTTCCGAAGGAATGTTTTTTTCCCAAGGCGC-CGAGAGCTCCAG ggctgcctcagcctagggaactaggatatttttaatttatataaaaccagatGAGCCTTCCCTTCACTTCCGAAGGAATGTTTTTTTCCCCAGACAGCCGTGAGCTCCAGgtgacccaggacttggggaatatcacagtgttccagtatgtccatgccag Alignment from CESAR atGAGCCTTCCCTTCAGTTCCGAAGGAATGTTTTTTTCCCAAGGCGC-CGAGAGCTCCAG ggctgcctcagcctagggaactaggatatttttaatttatataaaaccagatGAGCCTTCCCTTCACTTCCGAAGGAATGTTTTTTTCCCCAGACAGCCGTGAGCTCCAGgtgacccaggacttggggaatatcacagtgttccagtatgtccatgccag Alignment from Spaln_aa2Genome ATGAGCCTTCCCTTCAGTTCCGAAGGAATGTTTTTTTCCCAAGGCGC-CGAGAGCTCCAG ggctgcctcagcctagggaactaggatatttttaatttatataaaaccagATGAGCCTTCCCTTCACTTCCGAAGGAATGTTTTTTTCCCCAGACAGcCGTGAGCTCCAGgtgacccaggacttggggaatatcacagtgttccagtatgtccatgccag Alignment from Spaln_nt2Genome ATGAGCCTTCCCTTCAGTTCCGAAGGAATGTTTTTTTCCCAAGGC-GCCGAGAGCTCCAG ggctgcctcagcctagggaactaggatatttttaatttatataaaaccagATGAGCCTTCCCTTCACTTCCGAAGGAATGTTTTTTTCCCCAGACAGCCGTGAGCTCCAGgtgacccaggacttggggaatatcacagtgttccagtatgtccatgccag Alignment from Pairagon ATGAGCCTTCCCTTCAGTTCCGAAGGAATGTTTTTTTCCCAAGGC-GCCGAGAGCTCCAG ggctgcctcagcctagggaactaggatatttttaatttatataaaaccagATGAGCCTTCCCTTCACTTCCGAAGGAATGTTTTTTTCCCCAGACAGCCGTGAGCTCCAGgtgacccaggacttggggaatatcacagtgttccagtatgtccatgccag Alignment from Exonerate_protein2genome ATGAGCCTTCCCTTCAGTTCCGAAGGAATGTTTTTTTCCCAAGGCGC-CGAGAGCTCCAG ggctgcctcagcctagggaactaggatatttttaatttatataaaaccagATGAGCCTTCCCTTCACTTCCGAAGGAATGTTTTTTTCCCCAGACAGCCGTGAGCTCCAGgtgacccaggacttggggaatatcacagtgttccagtatgtccatgccag Alignment from Exonerate_coding2genome ATGAGCCTTCCCTTCAGTTCCGAAGGAATGTTTTTTTCCCAAGGCGC-CGAGAGCTCCAG ggctgcctcagcctagggaactaggatatttttaatttatataaaaccagATGAGCCTTCCCTTCACTTCCGAAGGAATGTTTTTTTCCCCAGACAGCCGTGAGCTCCAGgtgacccaggacttggggaatatcacagtgttccagtatgtccatgccag Alignment from GeneWise ggctgcctcagcctagggaactaggatatttttaatttatataaaaccagatgagccttcccttcacttccgaaggaatgtttttttccccagacagccgtgagctccaggtgacccaggacttggggaatatcacagtgttccagtatgtccatgccag #### Ganab_ID2472_11 --> 0 - 1 Original Alignment ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCA-GAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAg tgagtgcacgttggtgccggaaggcccaacaaattatttgtgtcttccagACACTATTTGGTAAGATGCTTGATTACTTGCAGGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGTCACGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTCCGGTCTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAggtacgcatgtttctgtttcttacaagtaaatgctacaaagtattacactt Alignment from CESAR ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCA-GAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAg tgagtgcacgttggtgccggaaggcccaacaaattatttgtgtcttccagACACTATTTGGTAAGATGCTTGATTACTTGCAGGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGTCACGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTCCGGTCTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAggtacgcatgtttctgtttcttacaagtaaatgctacaaagtattacactt Alignment from Spaln_aa2Genome ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCA-GAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG tgagtgcacgttggtgccggaaggcccaacaaattatttgtgtcttccagACACTATTTGGTAAGATGCTTGATTACTTGCAGGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGTCAcGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTCCGGTCTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAGgtacgcatgtttctgtttcttacaagtaaatgctacaaagtattacactt Alignment from Spaln_nt2Genome ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCA-GAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG tgagtgcacgttggtgccggaaggcccaacaaattatttgtgtcttccagACACTATTTGGTAAGATGCTTGATTACTTGCAGGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGTCACGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTCCGGTCTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAGgtacgcatgtttctgtttcttacaagtaaatgctacaaagtattacactt Alignment from Pairagon ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCA-GAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG tgagtgcacgttggtgccggaaggcccaacaaattatttgtgtcttccagACACTATTTGGTAAGATGCTTGATTACTTGCAGGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGTCACGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTCCGGTCTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAGgtacgcatgtttctgtttcttacaagtaaatgctacaaagtattacactt Alignment from Exonerate_protein2genome ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCA-GAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG tgagtgcacgttggtgccggaaggcccaacaaattatttgtgtcttccagACACTATTTGGTAAGATGCTTGATTACTTGCAGGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGTCACGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTCCGGTCTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAGgtacgcatgtttctgtttcttacaagtaaatgctacaaagtattacactt Alignment from Exonerate_coding2genome ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATGTCA-GAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAG tgagtgcacgttggtgccggaaggcccaacaaattatttgtgtcttccagACACTATTTGGTAAGATGCTTGATTACTTGCAGGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGTCACGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTCCGGTCTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAGgtacgcatgtttctgtttcttacaagtaaatgctacaaagtattacactt Alignment from GeneWise ACCCTGTTTGGGAAGATGCTTGATTACCTGCAGGGCTCTGGGGAGACTCCACAGACAGACATTCGTTGGATG-TCAGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTTCGGTTTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAGGGACCCAG tgagtgcacgttggtgccggaaggcccaacaaattatttgtgtcttccagACACTATTTGGTAAGATGCTTGATTACTTGCAGGGTTCTGGGGAGACTCCCCAGACAGATATTCGATGGATGTCACGAGAGTGGCATTATTGATGTTTTCCTAATGCTTGGCCCTCCGGTCTTTGATGTCTTTAGGCAGTATGCTAGTCTCACAGGTACGCATgtttctgtttcttacaagtaaatgctacaaagtattacactt #### Ganab_ID2475_14 --> 2 - 0 Original Alignment Ag gcTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGC-TTTGACAATTATGAG AggtttcttctgcggtcaatgaaatagtgttgcattctattttgctataggcTCAGCTAGTTACCCTGACTACACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCCTTTGACAATTATGAGgtcagtagctggtagtggtaatcatcatgatcttgttgatcatcaatagt Alignment from CESAR Ag gcTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGC-TTTGACAATTATGAG AggtaatgtctgcggtcaatgaaatagtgttgcattctattttgctataggcTCAGCTAGTTACCCTGACTACACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCCTTTGACAATTATGAGgtcagtagctggtagtggtaatcatcatgatcttgttgatcatcaatagt Alignment from Spaln_aa2Genome AG GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTC-AGCTTTGACAATTATGAG AGgtttcttctgcggtcaatgaaatagtgttgcattctattttgctatagGCTCAGCTAGTTACCCTGACTACACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCaGCCTTTGACAATTATGAGgtcagtagctggtagtggtaatcatcatgatcttgttgatcatcaatagt Alignment from Spaln_nt2Genome AG GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAG-CTTTGACAATTATGAG AGgtttcttctgcggtcaatgaaatagtgttgcattctattttgctatagGCTCAGCTAGTTACCCTGACTACACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCCTTTGACAATTATGAGgtcagtagctggtagtggtaatcatcatgatcttgttgatcatcaatagt Alignment from Pairagon ------------------------------------------------AGGCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAG-CTTTGACAATTATGAG AGGTTTCTTCTGCGGTCAATGAAATAGTGTTGCATTCTATTTTGCTATAGGCTCAGCTAGTTACCCTGACTACACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCCTTTGACAATTATGAGgtcagtagctggtagtggtaatcatcatgatcttgttgatcatcaatagt Alignment from Exonerate_protein2genome AG GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGC-TTTGACAATTATGAG AGgtttcttctgcggtcaatgaaatagtgttgcattctattttgctatagGCTCAGCTAGTTACCCTGACTACACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCCTTTGACAATTATGAGgtcagtagctggtagtggtaatcatcatgatcttgttgatcatcaatagt Alignment from Exonerate_coding2genome AG GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGC-TTTGACAATTATGAG AGgtttcttctgcggtcaatgaaatagtgttgcattctattttgctatagGCTCAGCTAGTTACCCTGACTACACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCCTTTGACAATTATGAGgtcagtagctggtagtggtaatcatcatgatcttgttgatcatcaatagt Alignment from GeneWise AG GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTC-AGCTTTGACAATTATGAG AGgtttcttctgcggtcaatgaaatagtgttgcattctattttgctatagGCTCAGCTAGTTACCCTGACTACACTAATCCAAGGATGAGGGCCTGGTGGTCTAACATGTTCAGCCTTTGACAATTATGAGgtcagtagctggtagtggtaatcatcatgatcttgttgatcatcaatagt #### Ganab_ID2476_15 --> 0 - 0 Original Alignment GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAAT-GAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agtaatctcctttttctccccctttacatgtgggtttttttcttttctagGGTTCAGCTCCTAATCTGTATGTCTGGATTGACATGAATCGAACCCTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCAGTGCATTATGGGGGCTGGGAGCACCGGGACATCCATAATTTTTATGGCTTATATGTGgtatagcaggcaaaggagaaggcagtaaggcaaagagaatcaaacagttg Alignment from CESAR GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAAT-GAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agtaatctcctttttctccccctttacatgtgggtttttttcttttctagGGTTCAGCTCCTAATCTGTATGTCTGGATTGACATGAATCGAACCCTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCAGTGCATTATGGGGGCTGGGAGCACCGGGACATCCATAATTTTTATGGCTTATATGTGgtatagcaggcaaaggagaaggcagtaaggcaaagagaatcaaacagttg Alignment from Spaln_aa2Genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAAT-GAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agtaatctcctttttctccccctttacatgtgggtttttttcttttctagGGTTCAGCTCCTAATCTGTATGTCTGGATTGACATGAATcGAACCCTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCAGTGCATTATGGGGGCTGGGAGCACCGGGACATCCATAATTTTTATGGCTTATATGTGgtatagcaggcaaaggagaaggcagtaaggcaaagagaatcaaacagttg Alignment from Spaln_nt2Genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAAT-GAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agtaatctcctttttctccccctttacatgtgggtttttttcttttctagGGTTCAGCTCCTAATCTGTATGTCTGGATTGACATGAATCGAACCCTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCAGTGCATTATGGGGGCTGGGAGCACCGGGACATCCATAATTTTTATGGCTTATATGTGgtatagcaggcaaaggagaaggcagtaaggcaaagagaatcaaacagttg Alignment from Pairagon GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAAT-GAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agtaatctcctttttctccccctttacatgtgggtttttttcttttctagGGTTCAGCTCCTAATCTGTATGTCTGGATTGACATGAATCGAACCCTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCAGTGCATTATGGGGGCTGGGAGCACCGGGACATCCATAATTTTTATGGCTTATATGTGgtatagcaggcaaaggagaaggcagtaaggcaaagagaatcaaacagttg Alignment from Exonerate_protein2genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAAT-GAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agtaatctcctttttctccccctttacatgtgggtttttttcttttctagGGTTCAGCTCCTAATCTGTATGTCTGGATTGACATGAATCGAACCCTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCAGTGCATTATGGGGGCTGGGAGCACCGGGACATCCATAATTTTTATGGCTTATATGTGgtatagcaggcaaaggagaaggcagtaaggcaaagagaatcaaacagttg Alignment from Exonerate_coding2genome GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAAT-GAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agtaatctcctttttctccccctttacatgtgggtttttttcttttctagGGTTCAGCTCCTAATCTGTATGTCTGGATTGACATGAATCGAACCCTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCAGTGCATTATGGGGGCTGGGAGCACCGGGACATCCATAATTTTTATGGCTTATATGTGgtatagcaggcaaaggagaaggcagtaaggcaaagagaatcaaacagttg Alignment from GeneWise GGTTCAGCTCCTAATCTTTATGTTTGGAATGACATGAAT-GAACCGTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCTGTGCATTATGGAGGCTGGGAGCACCGGGACATCCATAACATCTATGGCTTATATGTG agtaatctcctttttctccccctttacatgtgggtttttttcttttctagGGTTCAGCTCCTAATCTGTATGTCTGGATTGACATGAATCGAACCCTCTGTGTTCAATGGTCCTGAGGTCACCATGTTGAAGGATGCAGTGCATTATGGGGGCTGGGAGCACCGGGACATCCATAATTTTTATGGCTTATATGTGgtatagcaggcaaaggagaaggcagtaaggcaaagagaatcaaacagttg #### Ganab_ID2482_21 --> 0 - 0 Original Alignment GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAG-ACCTTGTATCTGCCAGTAACTTTGAGCAGT gacaaaaacatagatgccttatgtgtgacctcatagtggggcttttccagGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAACACCTTGTATCTACCAGTAACTTTGAGCAGTgtaaaaatgactatctcgccactacccgtgttcacttgtctattcctgga Alignment from CESAR GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAG-ACCTTGTATCTGCCAGTAACTTTGAGCAGT gacaaaaacatagatgccttatgtgtgacctcatagtggggcttttccagGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAACACCTTGTATCTACCAGTAACTTTGAGCAGTgtaaaaatgactatctcgccactacccgtgttcacttgtctattcctgga Alignment from Spaln_aa2Genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAGACCTTG-TATCTGCCAGTAACTTTGAGCAGT gacaaaaacatagatgccttatgtgtgacctcatagtggggcttttccagGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAACACCTTgTATCTACCAGTAACTTTGAGCAGTgtaaaaatgactatctcgccactacccgtgttcacttgtctattcctgga Alignment from Spaln_nt2Genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAG-ACCTTGTATCTGCCAGTAACTTTGAGCAGT gacaaaaacatagatgccttatgtgtgacctcatagtggggcttttccagGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAACACCTTGTATCTACCAGTAACTTTGAGCAGTgtaaaaatgactatctcgccactacccgtgttcacttgtctattcctgga Alignment from Pairagon GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAG-ACCTTGTATCTGCCAGTAACTTTGAGCAGT gacaaaaacatagatgccttatgtgtgacctcatagtggggcttttccagGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAACACCTTGTATCTACCAGTAACTTTGAGCAGTgtaaaaatgactatctcgccactacccgtgttcacttgtctattcctgga Alignment from Exonerate_protein2genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAG-ACCTTGTATCTGCCAGTAACTTTGAGCAGT gacaaaaacatagatgccttatgtgtgacctcatagtggggcttttccagGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAACACCTTGTATCTACCAGTAACTTTGAGCAGTgtaaaaatgactatctcgccactacccgtgttcacttgtctattcctgga Alignment from Exonerate_coding2genome GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAG-ACCTTGTATCTGCCAGTAACTTTGAGCAGT gacaaaaacatagatgccttatgtgtgacctcatagtggggcttttccagGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAACACCTTGTATCTACCAGTAACTTTGAGCAGTgtaaaaatgactatctcgccactacccgtgttcacttgtctattcctgga Alignment from GeneWise GTGTGGTATGACATTCAGAGCTATCAGAAGCATCATGGGCCCCAG-ACCTTGTATCTGCCAGTAACTTTGAGCAGT gacaaaaacatagatgccttatgtgtgacctcatagtggggcttttccagGTGTGGTATGATATTCAGAGCTATCAGAAACATCATGGGCCCCAACACCTTGTATCTACCAGTAACTTTGAGCAGTgtaaaaatgactatctcgccactacccgtgttcacttgtctattcctgga #### Ganab_ID2484_23 --> 0 - 2 Original Alignment GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAG-ACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTag cagaccccatcattggcttaggttccacatatgatgcctttcttcctcagGGTACTGCACAGGGAGAGCTCTTCCTGGATGATGGCCACACCTTTAACTATCAGCACTCGGCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTGTCTaggtaatgggtgtcctcttatgccctgcctccagggtttttccaagtggttt Alignment from CESAR GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAG-ACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTag cagaccccatcattggcttaggttccacatatgatgcctttcttcctcagGGTACTGCACAGGGAGAGCTCTTCCTGGATGATGGCCACACCTTTAACTATCAGCACTCGGCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTGTCTaggtaatgggtgtcctcttatgccctgcctccagggtttttccaagtggaag Alignment from Spaln_aa2Genome GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAG-ACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTAG cagaccccatcattggcttaggttccacatatgatgcctttcttcctcagGGTACTGCACAGGGAGAGCTCTTCCTGGATGATGGCCACACCTTTAACTATCAGcACTCGGCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTGTCTAGgtaatgggtgtcctcttatgccctgcctccagggtttttccaagtggttt Alignment from Spaln_nt2Genome GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAG-ACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTAG cagaccccatcattggcttaggttccacatatgatgcctttcttcctcagGGTACTGCACAGGGAGAGCTCTTCCTGGATGATGGCCACACCTTTAACTATCAGCACTCGGCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTGTCTAGgtaatgggtgtcctcttatgccctgcctccagggtttttccaagtggttt Alignment from Pairagon GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAG-ACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTAG cagaccccatcattggcttaggttccacatatgatgcctttcttcctcagGGTACTGCACAGGGAGAGCTCTTCCTGGATGATGGCCACACCTTTAACTATCAGCACTCGGCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTGTCTAGgtaatgggtgtcctcttatgccctgcctccagggtttttccaagtggttt Alignment from Exonerate_protein2genome GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAG-ACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTAG cagaccccatcattggcttaggttccacatatgatgcctttcttcctcagGGTACTGCACAGGGAGAGCTCTTCCTGGATGATGGCCACACCTTTAACTATCAGCACTCGGCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTGTCTAGgtaatgggtgtcctcttatgccctgcctccagggtttttccaagtggttt Alignment from Exonerate_coding2genome GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAG-ACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTAG cagaccccatcattggcttaggttccacatatgatgcctttcttcctcagGGTACTGCACAGGGAGAGCTCTTCCTGGATGATGGCCACACCTTTAACTATCAGCACTCGGCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTGTCTAGgtaatgggtgtcctcttatgccctgcctccagggtttttccaagtggttt Alignment from GeneWise GGTACTGCCCAAGGAGAGCTCTTTCTAGATGATGGACACACCTTTAACTATCAG-ACTCGCCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTCTCTAG cagaccccatcattggcttaggttccacatatgatgcctttcttcctcagGGTACTGCACAGGGAGAGCTCTTCCTGGATGATGGCCACACCTTTAACTATCAGCACTCGGCATGAGTTCCTGTTGCGGCGGTTCTCTTTCTCTGGCAGCACACTGGTGTCTAGgtaatgggtgtcctcttatgccctgcctccagggtttttccaagtggttt #### Ganab_ID2485_24 --> 1 - 1 Original Alignment tTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCT-GTGGTGCTCCAGACCAAAg gccctgcctccagggtttttccaagtggaagcttctccttttaattccagcCTAGCAGACCCTAAGGGCCACCTGGAGACACCTATCTGGGTGGAGCGAGTAGTCATAATGGGGGCTGGGAAGCCAGCTGCTCGTGGTGCTCCAGACAAAGggtatgttaagctgcagtaatgaattgagagaaaaagcagtagggataacc Alignment from CESAR tTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCT-GTGGTGCTCCAGACCAAAg gccctgcctccagggtttttccaagtggaagcttctccttttaattccagcCTAGCAGACCCTAAGGGCCACCTGGAGACACCTATCTGGGTGGAGCGAGTAGTCATAATGGGGGCTGGGAAGCCAGCTGCTCGTGGTGCTCCAGACAAAGggtatgttaagctgcagtaatgaattgagagaaaaagcagtagggataacc Alignment from Spaln_aa2Genome TTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCT-GTGGTGCTCCAGACCAAAG gccctgcctccagggtttttccaagtggaagcttctccttttaattccagCCTAGCAGACCCTAAGGGCCACCTGGAGACACCTATCTGGGTGGAGCGAGTAGTCATAATGGGGGCTGGGAAGCCAGCTGCTcGTGGTGCTCCAGACAAAGGgtatgttaagctgcagtaatgaattgagagaaaaagcagtagggataacc Alignment from Spaln_nt2Genome TTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCT-GTGGTGCTCCAGACCAAAG gccctgcctccagggtttttccaagtggaagcttctccttttaattccagCCTAGCAGACCCTAAGGGCCACCTGGAGACACCTATCTGGGTGGAGCGAGTAGTCATAATGGGGGCTGGGAAGCCAGCTGCTCGTGGTGCTCCAGACAAAGGgtatgttaagctgcagtaatgaattgagagaaaaagcagtagggataacc Alignment from Pairagon TTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCT-GTGGTGCTCCAGACCAAAG gccctgcctccagggtttttccaagtggaagcttctccttttaattccagCCTAGCAGACCCTAAGGGCCACCTGGAGACACCTATCTGGGTGGAGCGAGTAGTCATAATGGGGGCTGGGAAGCCAGCTGCTCGTGGTGCTCCAGACAAAGGgtatgttaagctgcagtaatgaattgagagaaaaagcagtagggataacc Alignment from Exonerate_protein2genome TTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCT-GTGGTGCTCCAGACCAAAG gccctgcctccagggtttttccaagtggaagcttctccttttaattccagCCTAGCAGACCCTAAGGGCCACCTGGAGACACCTATCTGGGTGGAGCGAGTAGTCATAATGGGGGCTGGGAAGCCAGCTGCTCGTGGTGCTCCAGACAAAGGgtatgttaagctgcagtaatgaattgagagaaaaagcagtagggataacc Alignment from Exonerate_coding2genome TTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCT-GTGGTGCTCCAGACCAAAG gccctgcctccagggtttttccaagtggaagcttctccttttaattccagCCTAGCAGACCCTAAGGGCCACCTGGAGACACCTATCTGGGTGGAGCGAGTAGTCATAATGGGGGCTGGGAAGCCAGCTGCTCGTGGTGCTCCAGACAAAGGgtatgttaagctgcagtaatgaattgagagaaaaagcagtagggataacc Alignment from GeneWise TTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTG gccctgcctccagggtttttccaagtggaagcttctccttttaattccagCCTAGCAGACCCTAAGGGCCACCTGGAGACACCTATCTGGGTGGAGCGAGTAGTCATAATGGGGGCTGGGAAGCCAGCTGCTCgtggtgctccagacaaagggtatgttaagctgcagtaatgaattgagagaaaaagcagtagggataacc #### Gbf1_ID9798_17 --> 0 - 2 Original Alignment CTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAGGTAGCCCAATGGCTCCGAGAA-AACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTTGGAGAGTTTTGTGag taatcttacttgaaactttagaaggatttaattttttcctttctgcacagTTATTGAGCACTGGTACAGAGCAGTTCAACCAAAAGCCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGTCTCCTCACCATTCCTATGGATAACACAGAAGTAGCCCAATGGCTCCAAGGACAACCCTCGGTTAGACAAAAAGATGATTGGAGAATTTGTGAGTGACCGCAAAATTATTGACCTATTGGAGAGTTTTGTGaggtgaggaaggattttaggcattgggctaagttagctggcacattaatagg Alignment from CESAR CTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAGGTAGCCCAATGGCTC-CGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTTGGAGAGTTTTGTGag taatcttacttgaaactttagaaggatttaattttttcctttctgcacagTTATTGAGCACTGGTACAGAGCAGTTCAACCAAAAGCCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGTCTCCTCACCATTCCTATGGATAACACAGAAGTAGCCCAATGGCTCCAAGGACAACCCTCGGTTAGACAAAAAGATGATTGGAGAATTTGTGAGTGACCGCAAAATTATTGACCTATTGGAGAGTTTTGTGaggtgaggaaggattttaggcattgggctaagttagctggcacattaatagg Alignment from Spaln_aa2Genome CTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAGGTAGCCCAATGGCTC-CGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTTGGAGAGTTTTGTGAG taatcttacttgaaactttagaaggatttaattttttcctttctgcacagTTATTGAGCACTGGTACAGAGCAGTTCAACCAAAAGCCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGTCTCCTCACCATTCCTATGGATAACACAGAAGTAGCCCAATGGCTCcAAGGACAACCCTCGGTTAGACAAAAAGATGATTGGAGAATTTGTGAGTGACCGCAAAATTATTGACCTATTGGAGAGTTTTGTGAGgtgaggaaggattttaggcattgggctaagttagctggcacattaatagg Alignment from Spaln_nt2Genome CTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAGGTAGCCCAATGGCTCCGAGAA-AACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTTGGAGAGTTTTGTGAG taatcttacttgaaactttagaaggatttaattttttcctttctgcacagTTATTGAGCACTGGTACAGAGCAGTTCAACCAAAAGCCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGTCTCCTCACCATTCCTATGGATAACACAGAAGTAGCCCAATGGCTCCAAGGACAACCCTCGGTTAGACAAAAAGATGATTGGAGAATTTGTGAGTGACCGCAAAATTATTGACCTATTGGAGAGTTTTGTGAGgtgaggaaggattttaggcattgggctaagttagctggcacattaatagg Alignment from Pairagon CTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAGGTAGCCCAATGGCTCCGAGAA-AACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTTGGAGAGTTTTGTGAG taatcttacttgaaactttagaaggatttaattttttcctttctgcacagTTATTGAGCACTGGTACAGAGCAGTTCAACCAAAAGCCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGTCTCCTCACCATTCCTATGGATAACACAGAAGTAGCCCAATGGCTCCAAGGACAACCCTCGGTTAGACAAAAAGATGATTGGAGAATTTGTGAGTGACCGCAAAATTATTGACCTATTGGAGAGTTTTGTGAGgtgaggaaggattttaggcattgggctaagttagctggcacattaatagg Alignment from Exonerate_protein2genome CTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAGGTAGCCCAATGGCTC-CGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTTGGAGAGTTTTGTGAG taatcttacttgaaactttagaaggatttaattttttcctttctgcacagTTATTGAGCACTGGTACAGAGCAGTTCAACCAAAAGCCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGTCTCCTCACCATTCCTATGGATAACACAGAAGTAGCCCAATGGCTCCAAGGACAACCCTCGGTTAGACAAAAAGATGATTGGAGAATTTGTGAGTGACCGCAAAATTATTGACCTATTGGAGAGTTTTGTGAGgtgaggaaggattttaggcattgggctaagttagctggcacattaatagg Alignment from Exonerate_coding2genome CTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAGGTAGCCCAATGGCTC-CGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTTGGAGAGTTTTGTGAG taatcttacttgaaactttagaaggatttaattttttcctttctgcacagTTATTGAGCACTGGTACAGAGCAGTTCAACCAAAAGCCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGTCTCCTCACCATTCCTATGGATAACACAGAAGTAGCCCAATGGCTCCAAGGACAACCCTCGGTTAGACAAAAAGATGATTGGAGAATTTGTGAGTGACCGCAAAATTATTGACCTATTGGAGAGTTTTGTGAGgtgaggaaggattttaggcattgggctaagttagctggcacattaatagg Alignment from GeneWise CTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAGGTAGCCCAATGGCTC-CGAGAAAACCCTCGGTTAGACAAAAAAATGATTGGAGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTTGGAGAGTTTTGTGAG taatcttacttgaaactttagaaggatttaattttttcctttctgcacagTTATTGAGCACTGGTACAGAGCAGTTCAACCAAAAGCCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGTCTCCTCACCATTCCTATGGATAACACAGAAGTAGCCCAATGGCTCCAAGGACAACCCTCGGTTAGACAAAAAGATGATTGGAGAATTTGTGAGTGACCGCAAAATTATTGACCTATTGGAGAGTTTTGTGAGgtgaggaaggattttaggcattgggctaagttagctggcacattaatagg #### Gbf1_ID9799_18 --> 1 - 0 Original Alignment cACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGT-TTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG tggttcattgtttcaaatctctgcaagttcttgtggctggttcctcacagtACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTTCGACTCTACCTTGAAGCCTTCCGTCTTGCCTGGGGAAGCCCCCCTTATTCACAGGTTGCTGGAGGTTTTCACTGAGCACTGGAGGgtaagtaatgctagagacgaattgtaatgtaggaatcactaacaaaggac Alignment from CESAR cACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGT-TTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG tggttcattgtttcaaatctctgcaagttcttgtggctggttcctcacagtACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTTCGACTCTACCTTGAAGCCTTCCGTCTTGCCTGGGGAAGCCCCCCTTATTCACAGGTTGCTGGAGGTTTTCACTGAGCACTGGAGGgtaagtaatgctagagacgaattgtaatgtaggaatcactaacaaaggac Alignment from Spaln_aa2Genome CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGTTTG-CCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG tggttcattgtttcaaatctctgcaagttcttgtggctggttcctcacagTACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTTCGACTCTACCTTGAAGCCTTCCGTCTTgCCTGGGGAAGCCCCCCTTATTCACAGGTTGCTGGAGGTTTTCACTGAGCACTGGAGGgtaagtaatgctagagacgaattgtaatgtaggaatcactaacaaaggac Alignment from Spaln_nt2Genome CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGT-TTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG tggttcattgtttcaaatctctgcaagttcttgtggctggttcctcacagTACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTTCGACTCTACCTTGAAGCCTTCCGTCTTGCCTGGGGAAGCCCCCCTTATTCACAGGTTGCTGGAGGTTTTCACTGAGCACTGGAGGgtaagtaatgctagagacgaattgtaatgtaggaatcactaacaaaggac Alignment from Pairagon CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGT-TTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG tggttcattgtttcaaatctctgcaagttcttgtggctggttcctcacagTACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTTCGACTCTACCTTGAAGCCTTCCGTCTTGCCTGGGGAAGCCCCCCTTATTCACAGGTTGCTGGAGGTTTTCACTGAGCACTGGAGGgtaagtaatgctagagacgaattgtaatgtaggaatcactaacaaaggac Alignment from Exonerate_protein2genome CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGT-TTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG tggttcattgtttcaaatctctgcaagttcttgtggctggttcctcacagTACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTTCGACTCTACCTTGAAGCCTTCCGTCTTGCCTGGGGAAGCCCCCCTTATTCACAGGTTGCTGGAGGTTTTCACTGAGCACTGGAGGgtaagtaatgctagagacgaattgtaatgtaggaatcactaacaaaggac Alignment from Exonerate_coding2genome CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGT-TTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG tggttcattgtttcaaatctctgcaagttcttgtggctggttcctcacagTACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTTCGACTCTACCTTGAAGCCTTCCGTCTTGCCTGGGGAAGCCCCCCTTATTCACAGGTTGCTGGAGGTTTTCACTGAGCACTGGAGGgtaagtaatgctagagacgaattgtaatgtaggaatcactaacaaaggac Alignment from GeneWise CACCTTCAGCTTTCAGGGTCTGCGGCTTGATGAAGCTCTCCGACTCTACCTGGAAGCCTTCCGT-TTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG tggttcattgtttcaaatctctgcaagttcttgtggctggttcctcacagTACCTTCAGCTTTCAAGGTCTGCGGCTTGATGAAGCTCTTCGACTCTACCTTGAAGCCTTCCGTCTTGCCTGGGGAAGCCCCCCTTATTCACAGGTTGCTGGAGGTTTTCACTGAGCACTGGAGGgtaagtaatgctagagacgaattgtaatgtaggaatcactaacaaaggac #### Gbf1_ID9800_19 --> 0 - 0 Original Alignment AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGA-AAGCAGAATGCACCCATGACCCTGGAG agtaaaaatttagttgtggggtgttacactttcccctccttttgtcacagAGCTGTAATGGCTCTCCTTTTGCTAATAGTGGTGCCTGCTTTGCCTTAGCCTATGGTGCCATCATGCTGAATACTGACCAGCACAACCACAATGTTCGGCAAGCAGAATGCGCCCATGACTCTAGAGgtaagaatgaaatagctgtctaactttaaaagtgtaaacaatattcaggt Alignment from CESAR AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGA-AAGCAGAATGCACCCATGACCCTGGAG agtaaaaatttagttgtggggtgttacactttcccctccttttgtcacagAGCTGTAATGGCTCTCCTTTTGCTAATAGTGGTGCCTGCTTTGCCTTAGCCTATGGTGCCATCATGCTGAATACTGACCAGCACAACCACAATGTTCGGCAAGCAGAATGCGCCCATGACTCTAGAGgtaagaatgaaatagctgtctaactttaaaagtgtaaacaatattcaggt Alignment from Spaln_aa2Genome AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGA-AAGCAGAATGCACCCATGACCCTGGAG agtaaaaatttagttgtggggtgttacactttcccctccttttgtcacagAGCTGTAATGGCTCTCCTTTTGCTAATAGTGGTGCCTGCTTTGCCTTAGCCTATGGTGCCATCATGCTGAATACTGACCAGCACAACCACAATGTTCGGcAAGCAGAATGCGCCCATGACTCTAGAGgtaagaatgaaatagctgtctaactttaaaagtgtaaacaatattcaggt Alignment from Spaln_nt2Genome AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGA-AAGCAGAATGCACCCATGACCCTGGAG agtaaaaatttagttgtggggtgttacactttcccctccttttgtcacagAGCTGTAATGGCTCTCCTTTTGCTAATAGTGGTGCCTGCTTTGCCTTAGCCTATGGTGCCATCATGCTGAATACTGACCAGCACAACCACAATGTTCGGCAAGCAGAATGCGCCCATGACTCTAGAGgtaagaatgaaatagctgtctaactttaaaagtgtaaacaatattcaggt Alignment from Pairagon AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGA-AAGCAGAATGCACCCATGACCCTGGAG agtaaaaatttagttgtggggtgttacactttcccctccttttgtcacagAGCTGTAATGGCTCTCCTTTTGCTAATAGTGGTGCCTGCTTTGCCTTAGCCTATGGTGCCATCATGCTGAATACTGACCAGCACAACCACAATGTTCGGCAAGCAGAATGCGCCCATGACTCTAGAGgtaagaatgaaatagctgtctaactttaaaagtgtaaacaatattcaggt Alignment from Exonerate_protein2genome AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGA-AAGCAGAATGCACCCATGACCCTGGAG agtaaaaatttagttgtggggtgttacactttcccctccttttgtcacagAGCTGTAATGGCTCTCCTTTTGCTAATAGTGGTGCCTGCTTTGCCTTAGCCTATGGTGCCATCATGCTGAATACTGACCAGCACAACCACAATGTTCGGCAAGCAGAATGCGCCCATGACTCTAGAGgtaagaatgaaatagctgtctaactttaaaagtgtaaacaatattcaggt Alignment from Exonerate_coding2genome AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGA-AAGCAGAATGCACCCATGACCCTGGAG agtaaaaatttagttgtggggtgttacactttcccctccttttgtcacagAGCTGTAATGGCTCTCCTTTTGCTAATAGTGGTGCCTGCTTTGCCTTAGCCTATGGTGCCATCATGCTGAATACTGACCAGCACAACCACAATGTTCGGCAAGCAGAATGCGCCCATGACTCTAGAGgtaagaatgaaatagctgtctaactttaaaagtgtaaacaatattcaggt Alignment from GeneWise AGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGA-AAGCAGAATGCACCCATGACCCTGGAG agtaaaaatttagttgtggggtgttacactttcccctccttttgtcacagAGCTGTAATGGCTCTCCTTTTGCTAATAGTGGTGCCTGCTTTGCCTTAGCCTATGGTGCCATCATGCTGAATACTGACCAGCACAACCACAATGTTCGGCAAGCAGAATGCGCCCATGACTCTAGAGgtaagaatgaaatagctgtctaactttaaaagtgtaaacaatattcaggt #### Gbf1_ID9803_22 --> 1 - 0 Original Alignment gAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACA-GCTCTAAGTAGTGAG gacctggtggatgttcactgggtgtttctggattttcttttatttttcaggAAGTGTGCTACGATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACACGCTCTAAGTAGTGAGgtaggatggaacgagaaaactagttagaggacgatgagcctcttcctccc Alignment from CESAR gAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACA-GCTCTAAGTAGTGAG gacctggtggatgttcactgggtgtttctggattttcttttatttttcaggAAGTGTGCTACGATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACACGCTCTAAGTAGTGAGgtaggatggaacgagaaaactagttagaggacgatgagcctcttcctccc Alignment from Spaln_aa2Genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACA-GCTCTAAGTAGTGAG gacctggtggatgttcactgggtgtttctggattttcttttatttttcagGAAGTGTGCTACGATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACAcGCTCTAAGTAGTGAGgtaggatggaacgagaaaactagttagaggacgatgagcctcttcctccc Alignment from Spaln_nt2Genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACA-GCTCTAAGTAGTGAG gacctggtggatgttcactgggtgtttctggattttcttttatttttcagGAAGTGTGCTACGATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACACGCTCTAAGTAGTGAGgtaggatggaacgagaaaactagttagaggacgatgagcctcttcctccc Alignment from Pairagon GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACA-GCTCTAAGTAGTGAG gacctggtggatgttcactgggtgtttctggattttcttttatttttcagGAAGTGTGCTACGATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACACGCTCTAAGTAGTGAGgtaggatggaacgagaaaactagttagaggacgatgagcctcttcctccc Alignment from Exonerate_protein2genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACA-GCTCTAAGTAGTGAG gacctggtggatgttcactgggtgtttctggattttcttttatttttcagGAAGTGTGCTACGATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACACGCTCTAAGTAGTGAGgtaggatggaacgagaaaactagttagaggacgatgagcctcttcctccc Alignment from Exonerate_coding2genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACA-GCTCTAAGTAGTGAG gacctggtggatgttcactgggtgtttctggattttcttttatttttcagGAAGTGTGCTACGATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACACGCTCTAAGTAGTGAGgtaggatggaacgagaaaactagttagaggacgatgagcctcttcctccc Alignment from GeneWise GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACA-GCTCTAAGTAGTGAG gacctggtggatgttcactgggtgtttctggattttcttttatttttcagGAAGTGTGCTACGATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCTGTGCAAATTCACACGCTCTAAGTAGTGAGgtaggatggaacgagaaaactagttagaggacgatgagcctcttcctccc #### Gbf1_ID9804_23 --> 0 - 0 Original Alignment TCTATTGAGAACCTT-CCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTCCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCCAAGGCTATGGTGGAG gcatttcctatatggaacctaccctaacctccttgactctttaatcttagTCTATTGAAAACCTTCCCCAGTGTATTTGGTAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTTCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGGTGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCTAAGGCTATGGTCGAGgttctgcctaataaataagcattaaaatattatagcctgatctgtcccac Alignment from CESAR TCTATTGAGAACCTT-CCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTCCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCCAAGGCTATGGTGGAG gcatttcctatatggaacctaccctaacctccttgactctttaatcttagTCTATTGAAAACCTTCCCCAGTGTATTTGGTAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTTCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGGTGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCTAAGGCTATGGTCGAGgttctgcctaataaataagcattaaaatattatagcctgatctgtcccac Alignment from Spaln_aa2Genome TCTATTGAGAACCTT-CCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTCCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCCAAGGCTATGGTGGAG gcatttcctatatggaacctaccctaacctccttgactctttaatcttagTCTATTGAAAACCTTcCCCAGTGTATTTGGTAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTTCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGGTGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCTAAGGCTATGGTCGAGgttctgcctaataaataagcattaaaatattatagcctgatctgtcccac Alignment from Spaln_nt2Genome TCTATTGAGAACCTT-CCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTCCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCCAAGGCTATGGTGGAG gcatttcctatatggaacctaccctaacctccttgactctttaatcttagTCTATTGAAAACCTTCCCCAGTGTATTTGGTAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTTCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGGTGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCTAAGGCTATGGTCGAGgttctgcctaataaataagcattaaaatattatagcctgatctgtcccac Alignment from Pairagon TCTATTGAGAACCTT-CCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTCCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCCAAGGCTATGGTGGAG gcatttcctatatggaacctaccctaacctccttgactctttaatcttagTCTATTGAAAACCTTCCCCAGTGTATTTGGTAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTTCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGGTGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCTAAGGCTATGGTCGAGgttctgcctaataaataagcattaaaatattatagcctgatctgtcccac Alignment from Exonerate_protein2genome TCTATTGAGAACCTT-CCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTCCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCCAAGGCTATGGTGGAG gcatttcctatatggaacctaccctaacctccttgactctttaatcttagTCTATTGAAAACCTTCCCCAGTGTATTTGGTAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTTCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGGTGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCTAAGGCTATGGTCGAGgttctgcctaataaataagcattaaaatattatagcctgatctgtcccac Alignment from Exonerate_coding2genome TCTATTGAGAACCTT-CCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTCCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCCAAGGCTATGGTGGAG gcatttcctatatggaacctaccctaacctccttgactctttaatcttagTCTATTGAAAACCTTCCCCAGTGTATTTGGTAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTTCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGGTGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCTAAGGCTATGGTCGAGgttctgcctaataaataagcattaaaatattatagcctgatctgtcccac Alignment from GeneWise TCTATTGAGAACCTTCCC-AGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTCCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCCAAGGCTATGGTGGAG gcatttcctatatggaacctaccctaacctccttgactctttaatcttagTCTATTGAAAACCTTCCCCAGTGTATTTGGTAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTTCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGGTGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCTAAGGCTATGGTCGAGgttctgcctaataaataagcattaaaatattatagcctgatctgtcccac #### Gbf1_ID9805_24 --> 0 - 2 Original Alignment GTAGAAGATTTTGTGGAT-CCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACcg agtgcgcccaggactgagcctttcattagcctccccctttcactctgtagGTAGAAGATTTTGTAGACCCCCAATGGCAAGATCTCTTTACAACATGAGGAGACACCATCAAACcggtagagtttgattaataattaaggcctagagaagtagatgtgatcagtac Alignment from CESAR GTAGAAGATTTTGTGGATCCC-AATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACcg agtgcgcccaggactgagcctttcattagcctccccctttcactctgtagGTAGAAGATTTTGTAGACCCCCAATGGCAAGATCTCTTTACAACATGAGGAGACACCATCAAACcggtagagtttgattaataattaaggcctagagaagtagatgtgatcagtac Alignment from Spaln_aa2Genome GTAGAAGATTTTGTGGAT-CCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agtgcgcccaggactgagcctttcattagcctccccctttcactctgtagGTAGAAGATTTTGTAGACcCCCAATGGCAAGATCTCTTTACAACATGAGGAGACACCATCAAACCGgtagagtttgattaataattaaggcctagagaagtagatgtgatcagtac Alignment from Spaln_nt2Genome GTAGAAGATTTTGTGGATCCC-AATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agtgcgcccaggactgagcctttcattagcctccccctttcactctgtagGTAGAAGATTTTGTAGACCCCCAATGGCAAGATCTCTTTACAACATGAGGAGACACCATCAAACCGgtagagtttgattaataattaaggcctagagaagtagatgtgatcagtac Alignment from Pairagon GTAGAAGATTTTGTGGA-TCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agtgcgcccaggactgagcctttcattagcctccccctttcactctgtagGTAGAAGATTTTGTAGACCCCCAATGGCAAGATCTCTTTACAACATGAGGAGACACCATCAAACCGgtagagtttgattaataattaaggcctagagaagtagatgtgatcagtac Alignment from Exonerate_protein2genome GTAGAAGATTTTGTGGAT-CCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agtgcgcccaggactgagcctttcattagcctccccctttcactctgtagGTAGAAGATTTTGTAGACCCCCAATGGCAAGATCTCTTTACAACATGAGGAGACACCATCAAACCGgtagagtttgattaataattaaggcctagagaagtagatgtgatcagtac Alignment from Exonerate_coding2genome GTAGAAGATTTTGTGGAT-CCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agtgcgcccaggactgagcctttcattagcctccccctttcactctgtagGTAGAAGATTTTGTAGACCCCCAATGGCAAGATCTCTTTACAACATGAGGAGACACCATCAAACCGgtagagtttgattaataattaaggcctagagaagtagatgtgatcagtac Alignment from GeneWise GTAGAAGATTTTGTGGATCCC-AATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG agtgcgcccaggactgagcctttcattagcctccccctttcactctgtagGTAGAAGATTTTGTAGACCCCCAATGGCAAGATCTCTTTACAACATGAGGAGACACCATCAAACCGgtagagtttgattaataattaaggcctagagaagtagatgtgatcagtac #### Gbf1_ID9806_25 --> 1 - 0 Original Alignment aGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAAC-CAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG tagagaagtagatgtgatcagtactaagtattattattttgatttttcagaGGAAAGTCAACAGTTCTGAGCTTTGTAAGCTGGCTGACATTGAGTGGCCCTGAGCAGTCCAGTGTCCAGGGTCCATCTACAGAGAACCCAAGAGGCTAAAAGGGTGGCCTTAGACTGTATTAAGgtaagttgtgacccaatgtgacaagggtaatcacctagggataacatatc Alignment from CESAR aGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAAC-CAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG tagagaagtagatgtgatcagtactaagtattattattttgatttttcagaGGAAAGTCAACAGTTCTGAGCTTTGTAAGCTGGCTGACATTGAGTGGCCCTGAGCAGTCCAGTGTCCAGGGTCCATCTACAGAGAACCCAAGAGGCTAAAAGGGTGGCCTTAGACTGTATTAAGgtaagttgtgacccaatgtgacaagggtaatcacctagggataacatatc Alignment from Spaln_aa2Genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAAC-CAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG tagagaagtagatgtgatcagtactaagtattattattttgatttttcagAGGAAAGTCAACAGTTCTGAGCTTTGTAAGCTGGCTGACATTGAGTGGCCCTGAGCAGTCCAGTGTCCAGGGTCCATCTACAGAGAACcCAAGAGGCTAAAAGGGTGGCCTTAGACTGTATTAAGgtaagttgtgacccaatgtgacaagggtaatcacctagggataacatatc Alignment from Spaln_nt2Genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAAC-CAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG tagagaagtagatgtgatcagtactaagtattattattttgatttttcagAGGAAAGTCAACAGTTCTGAGCTTTGTAAGCTGGCTGACATTGAGTGGCCCTGAGCAGTCCAGTGTCCAGGGTCCATCTACAGAGAACCCAAGAGGCTAAAAGGGTGGCCTTAGACTGTATTAAGgtaagttgtgacccaatgtgacaagggtaatcacctagggataacatatc Alignment from Pairagon AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAA-CCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG tagagaagtagatgtgatcagtactaagtattattattttgatttttcagAGGAAAGTCAACAGTTCTGAGCTTTGTAAGCTGGCTGACATTGAGTGGCCCTGAGCAGTCCAGTGTCCAGGGTCCATCTACAGAGAACCCAAGAGGCTAAAAGGGTGGCCTTAGACTGTATTAAGgtaagttgtgacccaatgtgacaagggtaatcacctagggataacatatc Alignment from Exonerate_protein2genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAAC-CAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG tagagaagtagatgtgatcagtactaagtattattattttgatttttcagAGGAAAGTCAACAGTTCTGAGCTTTGTAAGCTGGCTGACATTGAGTGGCCCTGAGCAGTCCAGTGTCCAGGGTCCATCTACAGAGAACCCAAGAGGCTAAAAGGGTGGCCTTAGACTGTATTAAGgtaagttgtgacccaatgtgacaagggtaatcacctagggataacatatc Alignment from Exonerate_coding2genome AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAAC-CAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG tagagaagtagatgtgatcagtactaagtattattattttgatttttcagAGGAAAGTCAACAGTTCTGAGCTTTGTAAGCTGGCTGACATTGAGTGGCCCTGAGCAGTCCAGTGTCCAGGGTCCATCTACAGAGAACCCAAGAGGCTAAAAGGGTGGCCTTAGACTGTATTAAGgtaagttgtgacccaatgtgacaagggtaatcacctagggataacatatc Alignment from GeneWise AGGAGAGTCAACAGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAAC-CAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAG tagagaagtagatgtgatcagtactaagtattattattttgatttttcagAGGAAAGTCAACAGTTCTGAGCTTTGTAAGCTGGCTGACATTGAGTGGCCCTGAGCAGTCCAGTGTCCAGGGTCCATCTACAGAGAACCCAAGAGGCTAAAAGGGTGGCCTTAGACTGTATTAAGgtaagttgtgacccaatgtgacaagggtaatcacctagggataacatatc #### Gbf1_ID9808_27 --> 0 - 2 Original Alignment GCTCTGGTCTCAGTGACACCAGATGAAGAGACA-TATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACag gaaagtgcttgaatcctagctccttactggccctctcctctgttctgcagGCTCTGGTCTCAGTGACCCCAGATGAAGAGACACTATGATGAAGAAGATGCCGCTTTTTGTCTTGAAATGCTGCTAAGGATTGTGCTGGAGAACaggtgaggtaagtcaggcctgcagaacccagaaggccctatactgggttacc Alignment from CESAR GCTCTGGTCTCAGTGACACCAGATGAAGAGACA-TATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACag gaaagtgcttgaatcctagctccttactggccctctcctctgttctgcagGCTCTGGTCTCAGTGACCCCAGATGAAGAGACACTATGATGAAGAAGATGCCGCTTTTTGTCTTGAAATGCTGCTAAGGATTGTGCTGGAGAACaggtgaggtaagtcaggcctgcagaacccagaaggccctatactgggttacc Alignment from Spaln_aa2Genome GCTCTGGTCTCAGTGACACCAGATGAAGAGACA-TATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG gaaagtgcttgaatcctagctccttactggccctctcctctgttctgcagGCTCTGGTCTCAGTGACCCCAGATGAAGAGACAcTATGATGAAGAAGATGCCGCTTTTTGTCTTGAAATGCTGCTAAGGATTGTGCTGGAGAACAGgtgaggtaagtcaggcctgcagaacccagaaggccctatactgggttacc Alignment from Spaln_nt2Genome GCTCTGGTCTCAGTGACACCAGATGAAGAGACA-TATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG gaaagtgcttgaatcctagctccttactggccctctcctctgttctgcagGCTCTGGTCTCAGTGACCCCAGATGAAGAGACACTATGATGAAGAAGATGCCGCTTTTTGTCTTGAAATGCTGCTAAGGATTGTGCTGGAGAACAGgtgaggtaagtcaggcctgcagaacccagaaggccctatactgggttacc Alignment from Pairagon GCTCTGGTCTCAGTGACACCAGATGAAGAGACA-TATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG gaaagtgcttgaatcctagctccttactggccctctcctctgttctgcagGCTCTGGTCTCAGTGACCCCAGATGAAGAGACACTATGATGAAGAAGATGCCGCTTTTTGTCTTGAAATGCTGCTAAGGATTGTGCTGGAGAACAGgtgaggtaagtcaggcctgcagaacccagaaggccctatactgggttacc Alignment from Exonerate_protein2genome GCTCTGGTCTCAGTGACACCAGATGAAGAGACA-TATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG gaaagtgcttgaatcctagctccttactggccctctcctctgttctgcagGCTCTGGTCTCAGTGACCCCAGATGAAGAGACACTATGATGAAGAAGATGCCGCTTTTTGTCTTGAAATGCTGCTAAGGATTGTGCTGGAGAACAGgtgaggtaagtcaggcctgcagaacccagaaggccctatactgggttacc Alignment from Exonerate_coding2genome GCTCTGGTCTCAGTGACACCAGATGAAGAGACA-TATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAACAG gaaagtgcttgaatcctagctccttactggccctctcctctgttctgcagGCTCTGGTCTCAGTGACCCCAGATGAAGAGACACTATGATGAAGAAGATGCCGCTTTTTGTCTTGAAATGCTGCTAAGGATTGTGCTGGAGAACAGgtgaggtaagtcaggcctgcagaacccagaaggccctatactgggttacc Alignment from GeneWise GCTCTGGTCTCAGTGACACCAGATGAAGAG-ACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTGCTAAGGATCGTGTTAGAGAAC-- gaaagtgcttgaatcctagctccttactggccctctcctctgttctgcagGCTCTGGTCTCAGTGACCCCAGATGAAGAGACACTATGATGAAGAAGATGCCGCTTTTTGTCTTGAAATGCTGCTAAGGATTGTGCTGGAGAACAGgtgaggtaagtcaggcctgcagaacccagaaggccctatactgggttacc #### Gbf1_ID9818_37 --> 0 - 1 Original Alignment TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCA-CACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGg gcatccaatttaaagcactacttctcctggaccctacccctcgcccacagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGCTAATGGACACAGCAGAGATTTTCCATAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACATGGGAGCGCATTGTCTGCTTCTTGCCACCACTTGCGTGATGAGCTCTTCAAGCAGACTGTCATCCAGggtttgtgcacatttgatagccacccctctgttcactgtactaggaattat Alignment from CESAR TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCA-CACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGg gcatccaatttaaagcactacttctcctggaccctacccctcgcccacagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGCTAATGGACACAGCAGAGATTTTCCATAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACATGGGAGCGCATTGTCTGCTTCTTGCCACCACTTGCGTGATGAGCTCTTCAAGCAGACTGTCATCCAGggtttgtgcacatttgatagccacccctctgttcactgtactaggaattat Alignment from Spaln_aa2Genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCA-CACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcatccaatttaaagcactacttctcctggaccctacccctcgcccacagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGCTAATGGACACAGCAGAGATTTTCCATAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACATGGGAGCGCATTGTCTGCTTCTTGCCAcCACTTGCGTGATGAGCTCTTCAAGCAGACTGTCATCCAGGgtttgtgcacatttgatagccacccctctgttcactgtactaggaattat Alignment from Spaln_nt2Genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCA-CACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcatccaatttaaagcactacttctcctggaccctacccctcgcccacagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGCTAATGGACACAGCAGAGATTTTCCATAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACATGGGAGCGCATTGTCTGCTTCTTGCCACCACTTGCGTGATGAGCTCTTCAAGCAGACTGTCATCCAGGgtttgtgcacatttgatagccacccctctgttcactgtactaggaattat Alignment from Pairagon TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCA-CACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcatccaatttaaagcactacttctcctggaccctacccctcgcccacagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGCTAATGGACACAGCAGAGATTTTCCATAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACATGGGAGCGCATTGTCTGCTTCTTGCCACCACTTGCGTGATGAGCTCTTCAAGCAGACTGTCATCCAGGgtttgtgcacatttgatagccacccctctgttcactgtactaggaattat Alignment from Exonerate_protein2genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCA-CACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcatccaatttaaagcactacttctcctggaccctacccctcgcccacagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGCTAATGGACACAGCAGAGATTTTCCATAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACATGGGAGCGCATTGTCTGCTTCTTGCCACCACTTGCGTGATGAGCTCTTCAAGCAGACTGTCATCCAGGgtttgtgcacatttgatagccacccctctgttcactgtactaggaattat Alignment from Exonerate_coding2genome TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCA-CACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcatccaatttaaagcactacttctcctggaccctacccctcgcccacagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGCTAATGGACACAGCAGAGATTTTCCATAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACATGGGAGCGCATTGTCTGCTTCTTGCCACCACTTGCGTGATGAGCTCTTCAAGCAGACTGTCATCCAGGgtttgtgcacatttgatagccacccctctgttcactgtactaggaattat Alignment from GeneWise TCAGAAGCTATCCCCGAGTCTCTGAAGAACATGCTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTG-CCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGG gcatccaatttaaagcactacttctcctggaccctacccctcgcccacagACAGAAGCTATCCCTGAGTCTCTGAAGAACATGCTACTGCTAATGGACACAGCAGAGATTTTCCATAGTGCAGATGCAAGAGGAGGAGGCCCCACTGCTCTCTGGGAGATCACATGGGAGCGCATTGTCTGCTTCTTGCCACCACTTGCGTGATGAGCTCTTCAAGCAGACTGTCATCCAGGgtttgtgcacatttgatagccacccctctgttcactgtactaggaattat #### Gif_ID3279_3 --> 2 - 1 Original Alignment acCTGACAAGTGGGCAGCTTGCCCTCACCGTTATGGCTCTCACGTCCTCCTGCAGAGAC-CCTGGAAGTAAAGTGTCCACTCTACTGAAGAAAATGGAGAACTGGTCACCTTCAa attcttgtagctacatcttcttgtgtcctctctgccaccgcttcttgcagacTTGACAAGTGGGCAGCTGGCTCTCACTGTTATGGCTCTCACATCCTCTTGCAGAGACCCCTGGTAGTAAGGTTTCTACTCTG---AAGAAAATGGAGAACTGGTCACCTTCAagtaagtgcagtttatggggagataaggagaagtagagtgatctaatgtgg Alignment from CESAR acCTGACAAGTGGGCAGCTTGCCCTCACCGTTATGGCTCTCACGTCCTCCTGCAGAGAC-CCTGGAAGTAAAGTGTCCACTCTACTGAAGAAAATGGAGAACTGGTCACCTTCAa attcttgtagctacatcttcttgtgtcctctctgccaccgcttcttgcagacTTGACAAGTGGGCAGCTGGCTCTCACTGTTATGGCTCTCACATCCTCTTGCAGAGACCCCTGGTAGTAAGGTTTCTACT---CTGAAGAAAATGGAGAACTGGTCACCTTCAagtaagtgcagtttatggggagataaggagaagtagagtgatctaatgtgg Alignment from Spaln_aa2Genome ACCTGACAAGTGGGCAGCTTGCCCTCACCGTTATGGCTCTCACGTCCTCCTGCAGAGACCCT-GGAAGTAAAGTGTCCACTCTACTGAAGAAAATGGAGAACTGGTCACCTTCAA attcttgtagctacatcttcttgtgtcctctctgccaccgcttcttgcagACTTGACAAGTGGGCAGCTGGCTCTCACTGTTATGGCTCTCACATCCTCTTGCAGAGACCCCtGGTAGTAAGGTTTCTACT---CTGAAGAAAATGGAGAACTGGTCACCTTCAAgtaagtgcagtttatggggagataaggagaagtagagtgatctaatgtgg Alignment from Spaln_nt2Genome ACCTGACAAGTGGGCAGCTTGCCCTCACCGTTATGGCTCTCACGTCCTCCTGCAGAGACCC-TGGAAGTAAAGTGTCCACTCTACTGAAGAAAATGGAGAACTGGTCACCTTCAA attcttgtagctacatcttcttgtgtcctctctgccaccgcttcttgcagACTTGACAAGTGGGCAGCTGGCTCTCACTGTTATGGCTCTCACATCCTCTTGCAGAGACCCCTGGTAGTAAGGTTTCTACT---CTGAAGAAAATGGAGAACTGGTCACCTTCAAgtaagtgcagtttatggggagataaggagaagtagagtgatctaatgtgg Alignment from Pairagon ACCTGACAAGTGGGCAGCTTGCCCTCACCGTTATGGCTCTCACGTCCTCCTGCAGAGA-CCCTGGAAGTAAAGTGTCCACTCTACTGAAGAAAATGGAGAACTGGTCACCTTCAA attcttgtagctacatcttcttgtgtcctctctgccaccgcttcttgcagACTTGACAAGTGGGCAGCTGGCTCTCACTGTTATGGCTCTCACATCCTCTTGCAGAGACCCCTGGTAGTAAGGTTTCTACT---CTGAAGAAAATGGAGAACTGGTCACCTTCAAgtaagtgcagtttatggggagataaggagaagtagagtgatctaatgtgg Alignment from Exonerate_protein2genome ACCTGACAAGTGGGCAGCTTGCCCTCACCGTTATGGCTCTCACGTCCTCCTGCAGAGAC-CCTGGAAGTAAAGTGTCCACTCTACTGAAGAAAATGGAGAACTGGTCACCTTCAA attcttgtagctacatcttcttgtgtcctctctgccaccgcttcttgcagACTTGACAAGTGGGCAGCTGGCTCTCACTGTTATGGCTCTCACATCCTCTTGCAGAGACCCCTGGTAGTAAGGTTTCTACT---CTGAAGAAAATGGAGAACTGGTCACCTTCAAgtaagtgcagtttatggggagataaggagaagtagagtgatctaatgtgg Alignment from Exonerate_coding2genome ACCTGACAAGTGGGCAGCTTGCCCTCACCGTTATGGCTCTCACGTCCTCCTGCAGAGAC-CCTGGAAGTAAAGTGTCCACTCTACTGAAGAAAATGGAGAACTGGTCACCTTCAA attcttgtagctacatcttcttgtgtcctctctgccaccgcttcttgcagACTTGACAAGTGGGCAGCTGGCTCTCACTGTTATGGCTCTCACATCCTCTTGCAGAGACCCCTGGTAGTAAGGTTTCTACT---CTGAAGAAAATGGAGAACTGGTCACCTTCAAgtaagtgcagtttatggggagataaggagaagtagagtgatctaatgtgg Alignment from GeneWise ACCTGACAAGTGGGCAGCTTGCCCTCACCGTTATGGCTCTCACGTCCTCCTGCAGAGACCCT-GGAAGTAAAGTGTCCACTCTACTGAAGAAAATGGAGAACTGGTCACCTTCAA attcttgtagctacatcttcttgtgtcctctctgccaccgcttcttgcagACTTGACAAGTGGGCAGCTGGCTCTCACTGTTATGGCTCTCACATCCTCTTGCAGAGACCCCTGGTAGTAAGGTTTCTACTCTG---AAGAAAATGGAGAACTGGTCACCTTCAAgtaagtgcagtttatggggagataaggagaagtagagtgatctaatgtgg #### Gldc_ID6402_13 --> 1 - 0 Original Alignment cTATCACTCAGAAACTAATCTTGTCCGGTAT-ATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gttaaggatttgcttaactcattctttagcctcctctgtgcctcctgcagtTATCACTCAGAAACTAATCTTGTCCGTTACCATGAAGAGACTGGAGAACCAAGACATCTCCCTTCTGCACAGTATGATCCCACTAgtaggtacatgacatggtagccatatacactggtatgtctaattagatgt Alignment from CESAR cTATCACTCAGAAACTAATCTTGTCCGGTAT-ATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gttaaggatttgcttaactcattctttagcctcctctgtgcctcctgcagtTATCACTCAGAAACTAATCTTGTCCGTTACCATGAAGAGACTGGAGAACCAAGACATCTCCCTTCTGCACAGTATGATCCCACTAgtaggtacatgacatggtagccatatacactggtatgtctaattagatgt Alignment from Spaln_aa2Genome CTATCACTCAGAAACTAATCTTGTCCGGTAT-ATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gttaaggatttgcttaactcattctttagcctcctctgtgcctcctgcagTTATCACTCAGAAACTAATCTTGTCCGTTACcATGAAGAGACTGGAGAACCAAGACATCTCCCTTCTGCACAGTATGATCCCACTAgtaggtacatgacatggtagccatatacactggtatgtctaattagatgt Alignment from Spaln_nt2Genome CTATCACTCAGAAACTAATCTTGTCCGGTAT-ATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gttaaggatttgcttaactcattctttagcctcctctgtgcctcctgcagTTATCACTCAGAAACTAATCTTGTCCGTTACCATGAAGAGACTGGAGAACCAAGACATCTCCCTTCTGCACAGTATGATCCCACTAgtaggtacatgacatggtagccatatacactggtatgtctaattagatgt Alignment from Pairagon CTATCACTCAGAAACTAATCTTGTCCGGTA-TATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gttaaggatttgcttaactcattctttagcctcctctgtgcctcctgcagTTATCACTCAGAAACTAATCTTGTCCGTTACCATGAAGAGACTGGAGAACCAAGACATCTCCCTTCTGCACAGTATGATCCCACTAgtaggtacatgacatggtagccatatacactggtatgtctaattagatgt Alignment from Exonerate_protein2genome CTATCACTCAGAAACTAATCTTGTCCGGTAT-ATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gttaaggatttgcttaactcattctttagcctcctctgtgcctcctgcagTTATCACTCAGAAACTAATCTTGTCCGTTACCATGAAGAGACTGGAGAACCAAGACATCTCCCTTCTGCACAGTATGATCCCACTAgtaggtacatgacatggtagccatatacactggtatgtctaattagatgt Alignment from Exonerate_coding2genome CTATCACTCAGAAACTAATCTTGTCCGGTAT-ATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gttaaggatttgcttaactcattctttagcctcctctgtgcctcctgcagTTATCACTCAGAAACTAATCTTGTCCGTTACCATGAAGAGACTGGAGAACCAAGACATCTCCCTTCTGCACAGTATGATCCCACTAgtaggtacatgacatggtagccatatacactggtatgtctaattagatgt Alignment from GeneWise ------------------TATATGAAGAAACTGGAGAACAAAGACATCTCCCTCGTTCACAGCATGATCCCACTG gttaaggatttgcttaactcattctttagcctcctctgtgcctcctgcagttatcactcagAAACTAATCTTGTCCGTTACCATGAAGAGACTGGAGAACCAAGACATCTCCCTTCTGCACAGTATGATCCCACTAgtaggtacatgacatggtagccatatacactggtatgtctaattagatgt #### Got1_ID8751_4 --> 2 - 0 Original Alignment agAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTG-GACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatgggtaagccccagtatttatctctgtggtcttgctttggtagagAACCATAATGCTGTATTTTCTGCTGCTGGTTTCAAGGACATTCGGCCCTATTGCTACTGGGATGCTGAGAAAAGAGGACTGCGACCTTCAGGGTTTTCTGAATGATCTGGAGgttggtgatacagaagcacagggaattctgtttaggtgcaggaagagata Alignment from CESAR agAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTG-GACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatgggtaagccccagtatttatctctgtggtcttgctttggtagagAACCATAATGCTGTATTTTCTGCTGCTGGTTTCAAGGACATTCGGCCCTATTGCTACTGGGATGCTGAGAAAAGAGGACTGCGACCTTCAGGGTTTTCTGAATGATCTGGAGgttggtgatacagaagcacagggaattctgtttaggtgcaggaagagata Alignment from Spaln_aa2Genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTG-GACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatgggtaagccccagtatttatctctgtggtcttgctttggtagAGAACCATAATGCTGTATTTTCTGCTGCTGGTTTCAAGGACATTCGGCCCTATTGCTACTGGGATGCTGAGAAAAGAGGACTGcGACCTTCAGGGTTTTCTGAATGATCTGGAGgttggtgatacagaagcacagggaattctgtttaggtgcaggaagagata Alignment from Spaln_nt2Genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTG-GACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatgggtaagccccagtatttatctctgtggtcttgctttggtagAGAACCATAATGCTGTATTTTCTGCTGCTGGTTTCAAGGACATTCGGCCCTATTGCTACTGGGATGCTGAGAAAAGAGGACTGCGACCTTCAGGGTTTTCTGAATGATCTGGAGgttggtgatacagaagcacagggaattctgtttaggtgcaggaagagata Alignment from Pairagon AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTG-GACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatgggtaagccccagtatttatctctgtggtcttgctttggtagAGAACCATAATGCTGTATTTTCTGCTGCTGGTTTCAAGGACATTCGGCCCTATTGCTACTGGGATGCTGAGAAAAGAGGACTGCGACCTTCAGGGTTTTCTGAATGATCTGGAGgttggtgatacagaagcacagggaattctgtttaggtgcaggaagagata Alignment from Exonerate_protein2genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTG-GACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatgggtaagccccagtatttatctctgtggtcttgctttggtagAGAACCATAATGCTGTATTTTCTGCTGCTGGTTTCAAGGACATTCGGCCCTATTGCTACTGGGATGCTGAGAAAAGAGGACTGCGACCTTCAGGGTTTTCTGAATGATCTGGAGgttggtgatacagaagcacagggaattctgtttaggtgcaggaagagata Alignment from Exonerate_coding2genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGACTG-GACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatgggtaagccccagtatttatctctgtggtcttgctttggtagAGAACCATAATGCTGTATTTTCTGCTGCTGGTTTCAAGGACATTCGGCCCTATTGCTACTGGGATGCTGAGAAAAGAGGACTGCGACCTTCAGGGTTTTCTGAATGATCTGGAGgttggtgatacagaagcacagggaattctgtttaggtgcaggaagagata Alignment from GeneWise AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTACTGGGATGCGGAGAAGAGAGGA-CTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatgggtaagccccagtatttatctctgtggtcttgctttggtagAGAACCATAATGCTGTATTTTCTGCTGCTGGTTTCAAGGACATTCGGCCCTATTGCTACTGGGATGCTGAGAAAAGAGGACTGCGACCTTCAGGGTTTTCTGAATGATCTGGAGgttggtgatacagaagcacagggaattctgtttaggtgcaggaagagata #### Gpr137_ID1886_5 --> 0 - 0 Original Alignment GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGG-GAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgtgcattagcttctgtattgacaaacttggttttctgtttgtttatagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTGGTGTTTGGTCTCATTCTC---TTTTGGCGAATTGCTGCCCACCACGTGGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtaacgacctcttgccacgacatgctaactcatctccatgcaatatatgg Alignment from CESAR GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGG-GAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgtgcattagcttctgtattgacaaacttggttttctgtttgtttatagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTGGTGTTTGGTCTCATTCTCTTT---TGGCGAATTGCTGCCCACCACGTGGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtaacgacctcttgccacgacatgctaactcatctccatgcaatatatgg Alignment from Spaln_aa2Genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGG-GAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgtgcattagcttctgtattgacaaacttggttttctgtttgtttatagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTGGTGTTTGGTCTCATTCTCTTT---TGGcGAATTGCTGCCCACCACGTGGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtaacgacctcttgccacgacatgctaactcatctccatgcaatatatgg Alignment from Spaln_nt2Genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgtgcattagcttctgtattgacaaacttggttttctgtttgtttatagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTGGTGTTTGGTCTCATTCTCTT--TTGGCGAATTGCTGCCCACCACGTGGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtaacgacctcttgccacgacatgctaactcatctccatgcaatatatgg Alignment from Pairagon GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgtgcattagcttctgtattgacaaacttggttttctgtttgtttatagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTGGTGTTTGGTCTCATTCTCTT--TTGGCGAATTGCTGCCCACCACGTGGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtaacgacctcttgccacgacatgctaactcatctccatgcaatatatgg Alignment from Exonerate_protein2genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGG-GAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgtgcattagcttctgtattgacaaacttggttttctgtttgtttatagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTGGTGTTTGGTCTCATTCTCTTT---TGGCGAATTGCTGCCCACCACGTGGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtaacgacctcttgccacgacatgctaactcatctccatgcaatatatgg Alignment from Exonerate_coding2genome GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGG-GAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgtgcattagcttctgtattgacaaacttggttttctgtttgtttatagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTGGTGTTTGGTCTCATTCTCTTT---TGGCGAATTGCTGCCCACCACGTGGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtaacgacctcttgccacgacatgctaactcatctccatgcaatatatgg Alignment from GeneWise GCAGATCTGGTGAATGACCTAGGGAACAAAGGCTACCTGGTGTTTGGTCTCATCCTCTTCGTTTGGGAACTGCTGCCCACCACATTGCTGGTGGGCTTCTTCCGGGTACACCGGCCCCCACAGGATCTG ctgtgcattagcttctgtattgacaaacttggttttctgtttgtttatagGCAGATCTGGTCAATGACCTAGTGAACAAAGGTTACCTGGTGTTTGGTCTCATTCTCTTTT--GGCGAATTGCTGCCCACCACGTGGCTGGTGGGCTTCTTCCGCGTACACCGGCCCCCACAGGATCTGgtaacgacctcttgccacgacatgctaactcatctccatgcaatatatgg #### Gpr137_ID1889_2 --> 0 - 2 Original Alignment GTGGTGTTCAAGGCCAAGGCGAAG-CGTCGGCCAGAGATGAGCCGAGGCtt aagaagggtaagctcacacgtcgaaaaactctaatttttttttggaaaagGTGGTATTCAAGGCCAAAGCTAGGCCGTCGACCAGCAATGAGCCGAGGGctgtaaatagaataactcattggcagtgagtaagcccatggctgagataggg Alignment from CESAR GTGGTGTTCAAGGCCAAGGCGAAG-CGTCGGCCAGAGATGAGCCGAGGCtt aagaagggtaagctcacacgtcgaaaaactctaatttttttttggaaaagGTGGTATTCAAGGCCAAAGCTAGGCCGTCGACCAGCAATGAGCCGAGGGctgtaaatagaataactcattggcagtgagtaagcccatggctgagataggg Alignment from Spaln_aa2Genome GTGGTGTTCAAGGCCAAGGCGAAG-CGTCGGCCAGAGATGAGCCGAGGCTT aagaagggtaagctcacacgtcgaaaaactctaatttttttttggaaaagGTGGTATTCAAGGCCAAAGCTAGGcCGTCGACCAGCAATGAGCCGAGGGCTgtaaatagaataactcattggcagtgagtaagcccatggctgagataggg Alignment from Spaln_nt2Genome GTGGTGTTCAAGGCCAAGGCGAAGC-GTCGGCCAGAGATGAGCCGAGGCTT aagaagggtaagctcacacgtcgaaaaactctaatttttttttggaaaagGTGGTATTCAAGGCCAAAGCTAGGCCGTCGACCAGCAATGAGCCGAGGGCTgtaaatagaataactcattggcagtgagtaagcccatggctgagataggg Alignment from Pairagon GTGGTGTTCAAGGCCAAGGCGAAG-CGTCGGCCAGAGATGAGCCGAGGCTT aagaagggtaagctcacacgtcgaaaaactctaatttttttttggaaaagGTGGTATTCAAGGCCAAAGCTAGGCCGTCGACCAGCAATGAGCCGAGGGCTgtaaatagaataactcattggcagtgagtaagcccatggctgagataggg Alignment from Exonerate_protein2genome GTGGTGTTCAAGGCCAAGGCGAAG-CGTCGGCCAGAGATGAGCCGAGGCTT aagaagggtaagctcacacgtcgaaaaactctaatttttttttggaaaagGTGGTATTCAAGGCCAAAGCTAGGCCGTCGACCAGCAATGAGCCGAGGGCTgtaaatagaataactcattggcagtgagtaagcccatggctgagataggg Alignment from Exonerate_coding2genome TCGGCCAGAGATGAGCCGAGGCTT AAGAAGGGTAAGCTCACACGTCGAaaaactctaatttttttttggaaaaggtggtattcaaggccaaagctaggccgtcgaccagcaatgagccgagggctgtaaatagaataactcattggcagtgagtaagcccatggctgagataggg Alignment from GeneWise ---AAGCGTCGGCCAGAGATGAGCCGAGGCTT aagaagggtaagctcacacgtcgaaaaactctaatttttttttggaaaaggtggtattcaaggccaaagCTAGGCCGTCGACCAGCAATGAGCCGAGGGCTgtaaatagaataactcattggcagtgagtaagcccatggctgagataggg #### Hnrnpul2_ID2408_12 --> 2 - 0 Original Alignment tgGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAG-CAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttgtgcatctgtaatgtaaatcatagaaaaatcttgaattccagtgGGTGGGCAGCGCCGAGGCTATGACAACCAGGCCTATGGGCAGCCAGTACTGGGGGCAGTCTGGAACCAGAGGGgtgaatgcatgcctttctttactcctccctccagcctgtgaaggaattga Alignment from CESAR tgGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAG-CAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttgtgcatctgtaatgtaaatcatagaaaaatcttgaattccagtgGGTGGGCAGCGCCGAGGCTATGACAACCAGGCCTATGGGCAGCCAGTACTGGGGGCAGTCTGGAACCAGAGGGgtgaatgcatgcctttctttactcctccctccagcctgtgaaggaattga Alignment from Spaln_aa2Genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAG-CAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttgtgcatctgtaatgtaaatcatagaaaaatcttgaattccagTGGGTGGGCAGCGCCGAGGCTATGACAACCAGGCCTATGGGCAGcCAGTACTGGGGGCAGTCTGGAACCAGAGGGgtgaatgcatgcctttctttactcctccctccagcctgtgaaggaattga Alignment from Spaln_nt2Genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAG-CAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttgtgcatctgtaatgtaaatcatagaaaaatcttgaattccagTGGGTGGGCAGCGCCGAGGCTATGACAACCAGGCCTATGGGCAGCCAGTACTGGGGGCAGTCTGGAACCAGAGGGgtgaatgcatgcctttctttactcctccctccagcctgtgaaggaattga Alignment from Pairagon TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAG-CAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttgtgcatctgtaatgtaaatcatagaaaaatcttgaattccagTGGGTGGGCAGCGCCGAGGCTATGACAACCAGGCCTATGGGCAGCCAGTACTGGGGGCAGTCTGGAACCAGAGGGgtgaatgcatgcctttctttactcctccctccagcctgtgaaggaattga Alignment from Exonerate_protein2genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAG-CAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttgtgcatctgtaatgtaaatcatagaaaaatcttgaattccagTGGGTGGGCAGCGCCGAGGCTATGACAACCAGGCCTATGGGCAGCCAGTACTGGGGGCAGTCTGGAACCAGAGGGgtgaatgcatgcctttctttactcctccctccagcctgtgaaggaattga Alignment from Exonerate_coding2genome TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAG-CAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttgtgcatctgtaatgtaaatcatagaaaaatcttgaattccagTGGGTGGGCAGCGCCGAGGCTATGACAACCAGGCCTATGGGCAGCCAGTACTGGGGGCAGTCTGGAACCAGAGGGgtgaatgcatgcctttctttactcctccctccagcctgtgaaggaattga Alignment from GeneWise TGGGCGGGCAGCGCCGAGGCTACGACAACCGGGCCTACGGGCAG-CAGTACTGGGGGCAGTCTGGAAACAGAGGG atttgtttgtgcatctgtaatgtaaatcatagaaaaatcttgaattccagTGGGTGGGCAGCGCCGAGGCTATGACAACCAGGCCTATGGGCAGCCAGTACTGGGGGCAGTCTGGAACCAGAGGGgtgaatgcatgcctttctttactcctccctccagcctgtgaaggaattga #### Hps1_ID8616_12 --> 0 - 2 Original Alignment AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGA-AGTGAGCCAGGATCGTCCTGGga tctttgtggagaacaccctcatacagtcactgatgcacactgtatctaagAATGCCTGGCTGGAGTTTAAGAGTAAAGCCTTCTCTAAACGGTGAGCCAGGTTCATCCTGGgagtgagtctattgaagcaaaagagttatgtacactcatgcacagtcacttg Alignment from CESAR AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGA-AGTGAGCCAGGATCGTCCTGGga tctttgtggagaacaccctcatacagtcactgatgcacactgtatctaagAATGCCTGGCTGGAGTTTAAGAGTAAAGCCTTCTCTAAACGGTGAGCCAGGTTCATCCTGGgagtgagtctattgaagcaaaagagttatgtacactcatgcacagtcacttg Alignment from Spaln_aa2Genome AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGA-AGTGAGCCAGGATCGTCCTGGGA tctttgtggagaacaccctcatacagtcactgatgcacactgtatctaagAATGCCTGGCTGGAGTTTAAGAGTAAAGCCTTCTCTAAAcGGTGAGCCAGGTTCATCCTGGGAgtgagtctattgaagcaaaagagttatgtacactcatgcacagtcacttg Alignment from Spaln_nt2Genome AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGAAG-TGAGCCAGGATCGTCCTGGGA tctttgtggagaacaccctcatacagtcactgatgcacactgtatctaagAATGCCTGGCTGGAGTTTAAGAGTAAAGCCTTCTCTAAACGGTGAGCCAGGTTCATCCTGGGAgtgagtctattgaagcaaaagagttatgtacactcatgcacagtcacttg Alignment from Pairagon AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGA-AGTGAGCCAGGATCGTCCTGGGA tctttgtggagaacaccctcatacagtcactgatgcacactgtatctaagAATGCCTGGCTGGAGTTTAAGAGTAAAGCCTTCTCTAAACGGTGAGCCAGGTTCATCCTGGGAgtgagtctattgaagcaaaagagttatgtacactcatgcacagtcacttg Alignment from Exonerate_protein2genome AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGA-AGTGAGCCAGGATCGTCCTGGGA tctttgtggagaacaccctcatacagtcactgatgcacactgtatctaagAATGCCTGGCTGGAGTTTAAGAGTAAAGCCTTCTCTAAACGGTGAGCCAGGTTCATCCTGGGAgtgagtctattgaagcaaaagagttatgtacactcatgcacagtcacttg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AACACCTGGCTGGAGTTTAAGAGCAAAGCCTTCTCTAGA-AGTGAGCCAGGATCGTCCTGGGA tctttgtggagaacaccctcatacagtcactgatgcacactgtatctaagAATGCCTGGCTGGAGTTTAAGAGTAAAGCCTTCTCTAAACGGTGAGCCAGGTTCATCCTGGGAgtgagtctattgaagcaaaagagttatgtacactcatgcacagtcacttg #### Incenp_ID2614_5 --> 1 - 0 Original Alignment cCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAA-GAGGAGCAAGAG atgcgctgtgaagataccagaaactttggctttttttttttcctccacagcCTTGAGCAGGAGCCTGTCGAGGTTACTGAGCCTGAGGATGCAGAACGAGGAGCAGGAGgtaggtttacaagccacacctgggcaggctctgactcccccaagcttgtg Alignment from CESAR cCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAA-GAGGAGCAAGAG atgcgctgtgaagataccagaaactttggctttttttttttcctccacagcCTTGAGCAGGAGCCTGTCGAGGTTACTGAGCCTGAGGATGCAGAACGAGGAGCAGGAGgtaggtttacaagccacacctgggcaggctctgactcccccaagcttgtg Alignment from Spaln_aa2Genome CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAA-GAGGAGCAAGAG atgcgctgtgaagataccagaaactttggctttttttttttcctccacagCCTTGAGCAGGAGCCTGTCGAGGTTACTGAGCCTGAGGATGCAGAAcGAGGAGCAGGAGgtaggtttacaagccacacctgggcaggctctgactcccccaagcttgtg Alignment from Spaln_nt2Genome CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAA-GAGGAGCAAGAG atgcgctgtgaagataccagaaactttggctttttttttttcctccacagCCTTGAGCAGGAGCCTGTCGAGGTTACTGAGCCTGAGGATGCAGAACGAGGAGCAGGAGgtaggtttacaagccacacctgggcaggctctgactcccccaagcttgtg Alignment from Pairagon CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAA-GAGGAGCAAGAG atgcgctgtgaagataccagaaactttggctttttttttttcctccacagCCTTGAGCAGGAGCCTGTCGAGGTTACTGAGCCTGAGGATGCAGAACGAGGAGCAGGAGgtaggtttacaagccacacctgggcaggctctgactcccccaagcttgtg Alignment from Exonerate_protein2genome CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAA-GAGGAGCAAGAG atgcgctgtgaagataccagaaactttggctttttttttttcctccacagCCTTGAGCAGGAGCCTGTCGAGGTTACTGAGCCTGAGGATGCAGAACGAGGAGCAGGAGgtaggtttacaagccacacctgggcaggctctgactcccccaagcttgtg Alignment from Exonerate_coding2genome CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAA-GAGGAGCAAGAG atgcgctgtgaagataccagaaactttggctttttttttttcctccacagCCTTGAGCAGGAGCCTGTCGAGGTTACTGAGCCTGAGGATGCAGAACGAGGAGCAGGAGgtaggtttacaagccacacctgggcaggctctgactcccccaagcttgtg Alignment from GeneWise CCTGGAGCAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAA-GAGGAGCAAGAG atgcgctgtgaagataccagaaactttggctttttttttttcctccacagCCTTGAGCAGGAGCCTGTCGAGGTTACTGAGCCTGAGGATGCAGAACGAGGAGCAGGAGgtaggtttacaagccacacctgggcaggctctgactcccccaagcttgtg #### Jak2_ID6240_16 --> 0 - 1 Original Alignment AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGC-CTGTTTACTCCAg tcatttgtgaagcaacctgcatccctaagtggtcttgatttctgttttagAAACTGCAGTTCTATGAAGACAAGCATCAGCTTCCTGCCCCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGATCTTAATAGCCCTGTTTACTCCTggtaagtgctggtcagactctcttctgaccactgatgatggatttgtcttc Alignment from CESAR AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGC-CTGTTTACTCCAg tcatttgtgaagcaacctgcatccctaagtggtcttgatttctgttttagAAACTGCAGTTCTATGAAGACAAGCATCAGCTTCCTGCCCCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGATCTTAATAGCCCTGTTTACTCCTggtaagtgctggtcagactctcttctgaccactgatgatggatttgtcttc Alignment from Spaln_aa2Genome AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGC-CTGTTTACTCCAG tcatttgtgaagcaacctgcatccctaagtggtcttgatttctgttttagAAACTGCAGTTCTATGAAGACAAGCATCAGCTTCCTGCCCCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGATCTTAATAGCcCTGTTTACTCCTGgtaagtgctggtcagactctcttctgaccactgatgatggatttgtcttc Alignment from Spaln_nt2Genome AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCC-TGTTTACTCCAG tcatttgtgaagcaacctgcatccctaagtggtcttgatttctgttttagAAACTGCAGTTCTATGAAGACAAGCATCAGCTTCCTGCCCCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGATCTTAATAGCCCTGTTTACTCCTGgtaagtgctggtcagactctcttctgaccactgatgatggatttgtcttc Alignment from Pairagon AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAG-CCTGTTTACTCCAG tcatttgtgaagcaacctgcatccctaagtggtcttgatttctgttttagAAACTGCAGTTCTATGAAGACAAGCATCAGCTTCCTGCCCCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGATCTTAATAGCCCTGTTTACTCCTGgtaagtgctggtcagactctcttctgaccactgatgatggatttgtcttc Alignment from Exonerate_protein2genome AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGC-CTGTTTACTCCAG tcatttgtgaagcaacctgcatccctaagtggtcttgatttctgttttagAAACTGCAGTTCTATGAAGACAAGCATCAGCTTCCTGCCCCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGATCTTAATAGCCCTGTTTACTCCTGgtaagtgctggtcagactctcttctgaccactgatgatggatttgtcttc Alignment from Exonerate_coding2genome AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGC-CTGTTTACTCCAG tcatttgtgaagcaacctgcatccctaagtggtcttgatttctgttttagAAACTGCAGTTCTATGAAGACAAGCATCAGCTTCCTGCCCCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGATCTTAATAGCCCTGTTTACTCCTGgtaagtgctggtcagactctcttctgaccactgatgatggatttgtcttc Alignment from GeneWise AAGCTGCAGTTCTATGAAGATAAGCATCAGCTTCCTGCACCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGGCCTGCTTTCAGAGCTGTCATCCGTGATCTTAACAGCCTG tcatttgtgaagcaacctgcatccctaagtggtcttgatttctgttttagAAACTGCAGTTCTATGAAGACAAGCATCAGCTTCCTGCCCCCAAGTGGACAGAGTTAGCAAACCTTATAAATAATTGCATGGACTATGAGCCAGATTTCAGACCTGCCTTCAGAGCTCTTGTACGTGATCTTAATAGCCCTgtttactcctggtaagtgctggtcagactctcttctgaccactgatgatggatttgtcttc #### Jak2_ID6243_19 --> 2 - 0 Original Alignment gtCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAA-CATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtggcacataacactacagatgtcctgtctccactaggtCGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACTATCTCCAAAAACCATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagaaccgcttcacatctcttttgtgcatgctgatctaagtaattata Alignment from CESAR gtCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAA-CATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtggcacataacactacagatgtcctgtctccactaggtCGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACTATCTCCAAAAACCATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagaaccgcttcacatctcttttgtgcatgctgatctaagtaattata Alignment from Spaln_aa2Genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAA-CATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtggcacataacactacagatgtcctgtctccactagGTCGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACTATCTCCAAAAAcCATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagaaccgcttcacatctcttttgtgcatgctgatctaagtaattata Alignment from Spaln_nt2Genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCC-AAAAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtggcacataacactacagatgtcctgtctccactagGTCGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACTATCTCCAAAAACCATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagaaccgcttcacatctcttttgtgcatgctgatctaagtaattata Alignment from Pairagon GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAA-CATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtggcacataacactacagatgtcctgtctccactagGTCGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACTATCTCCAAAAACCATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagaaccgcttcacatctcttttgtgcatgctgatctaagtaattata Alignment from Exonerate_protein2genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAA-CATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtggcacataacactacagatgtcctgtctccactagGTCGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACTATCTCCAAAAACCATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagaaccgcttcacatctcttttgtgcatgctgatctaagtaattata Alignment from Exonerate_coding2genome GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAAAAA-CATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtggcacataacactacagatgtcctgtctccactagGTCGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACTATCTCCAAAAACCATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagaaccgcttcacatctcttttgtgcatgctgatctaagtaattata Alignment from GeneWise GTCGGCGCAACCTAAGATTAATTATGGAATATTTACCATATGGAAGTTTACGAGACTATCTCCAA-AAACATAAAGAACGGATAGATCACAAAAAACTTCTTCAATACACATCTCAGATATGCAAG taaccaacttgtagtggcacataacactacagatgtcctgtctccactagGTCGGCACAATCTAAGATTAATTATGGAATATTTACCTTATGGAAGCCTACGAGACTATCTCCAAAAACCATAAAGAACGAATAGATCACAAGAAACTCCTTCAATACACATCTCAGATATGCAAGgtgagaaccgcttcacatctcttttgtgcatgctgatctaagtaattata #### Kat5_ID1109_13 --> 1 - 0 Original Alignment tGAGATCAGTGAAATCACTAGTATCAAG-AAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG acagatgtgtatccacaggtgataacttttcttttttaatgtattcacagtGAGATCAGTGAAATTACTAGTATTAAGCAAAGAAGATGTCATCTCTACACTGCAGTATCTCAACCTCATCAATTACTACAAGgtgagcgggcataactacaaggtgacgcaacatgctcatgctcaaacaat Alignment from CESAR tGAGATCAGTGAAATCACTAGTATCAAG-AAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG acagatgtgtatccacaggtgataacttttcttttttaatgtattcacagtGAGATCAGTGAAATTACTAGTATTAAGCAAAGAAGATGTCATCTCTACACTGCAGTATCTCAACCTCATCAATTACTACAAGgtgagcgggcataactacaaggtgacgcaacatgctcatgctcaaacaat Alignment from Spaln_aa2Genome TGAGATCAGTGAAATCACTAGTATCAAG-AAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG acagatgtgtatccacaggtgataacttttcttttttaatgtattcacagTGAGATCAGTGAAATTACTAGTATTAAGcAAAGAAGATGTCATCTCTACACTGCAGTATCTCAACCTCATCAATTACTACAAGgtgagcgggcataactacaaggtgacgcaacatgctcatgctcaaacaat Alignment from Spaln_nt2Genome TGAGATCAGTGAAATCACTAGTATCAAG-AAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG acagatgtgtatccacaggtgataacttttcttttttaatgtattcacagTGAGATCAGTGAAATTACTAGTATTAAGCAAAGAAGATGTCATCTCTACACTGCAGTATCTCAACCTCATCAATTACTACAAGgtgagcgggcataactacaaggtgacgcaacatgctcatgctcaaacaat Alignment from Pairagon TGAGATCAGTGAAATCACTAGTATCAAG-AAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG acagatgtgtatccacaggtgataacttttcttttttaatgtattcacagTGAGATCAGTGAAATTACTAGTATTAAGCAAAGAAGATGTCATCTCTACACTGCAGTATCTCAACCTCATCAATTACTACAAGgtgagcgggcataactacaaggtgacgcaacatgctcatgctcaaacaat Alignment from Exonerate_protein2genome TGAGATCAGTGAAATCACTAGTATCAAG-AAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG acagatgtgtatccacaggtgataacttttcttttttaatgtattcacagTGAGATCAGTGAAATTACTAGTATTAAGCAAAGAAGATGTCATCTCTACACTGCAGTATCTCAACCTCATCAATTACTACAAGgtgagcgggcataactacaaggtgacgcaacatgctcatgctcaaacaat Alignment from Exonerate_coding2genome TGAGATCAGTGAAATCACTAGTATCAAG-AAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG acagatgtgtatccacaggtgataacttttcttttttaatgtattcacagTGAGATCAGTGAAATTACTAGTATTAAGCAAAGAAGATGTCATCTCTACACTGCAGTATCTCAACCTCATCAATTACTACAAGgtgagcgggcataactacaaggtgacgcaacatgctcatgctcaaacaat Alignment from GeneWise TGAGATCAGTGAAATCACTAGTATCAAG-AAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG acagatgtgtatccacaggtgataacttttcttttttaatgtattcacagTGAGATCAGTGAAATTACTAGTATTAAGCAAAGAAGATGTCATCTCTACACTGCAGTATCTCAACCTCATCAATTACTACAAGgtgagcgggcataactacaaggtgacgcaacatgctcatgctcaaacaat #### Kat5_ID1118_4 --> 2 - 0 Original Alignment tcAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTA-AAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aggttaaggaaacctgcagcattccctctgtcccttctgtcccactgcagtcAACAAACGTCTGGATGAGTGGGTAACCCATGAGAGGCTGGACTTACCCAAAGATACAACTACCTAAAAAAGAGGCTCAGACACCCACCAAGAATGGACTCCCCGGGTCCCACCCTGGCTCCCCCAAAAGGGAGGTGgtgagtagattgaccacttttgtctccaatctctctggtccatcatgtct Alignment from CESAR tcAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTA---AAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aggttaaggaaacctgcagcattccctctgtcccttctgtcccactgcagtcAACAAACGTCTGGATGAGTGGGTAACCCATGAGAGGCTGGACTTACCCA--AAGATACAACTACCTAAAAAAGAGGCTCAGACACCCACCAAGAATGGACTCCCCGGGTCCCACCCTGGCTCCCCCAAAAGGGAGGTGgtgagtagattgaccacttttgtctccaatctctctggtccatcatgtct Alignment from Spaln_aa2Genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAG-AAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aggttaaggaaacctgcagcattccctctgtcccttctgtcccactgcagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGAGGCTGGACTTACCCaAAGATACAACTACCTAAAAAAGAGGCTCAGACACCCACCAAGAATGGACTCCCCGGGTCCCACCCTGGCTCCCCCAAAAGGGAGGTGgtgagtagattgaccacttttgtctccaatctctctggtccatcatgtct Alignment from Spaln_nt2Genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAAGAA-GATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aggttaaggaaacctgcagcattccctctgtcccttctgtcccactgcagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGAGGCTGGACTTACCCAAAGATACAACTACCTAAAAAAGAGGCTCAGACACCCACCAAGAATGGACTCCCCGGGTCCCACCCTGGCTCCCCCAAAAGGGAGGTGgtgagtagattgaccacttttgtctccaatctctctggtccatcatgtct Alignment from Pairagon TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTAAA-GAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aggttaaggaaacctgcagcattccctctgtcccttctgtcccactgcagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGAGGCTGGACTTACCCAAAGATACAACTACCTAAAAAAGAGGCTCAGACACCCACCAAGAATGGACTCCCCGGGTCCCACCCTGGCTCCCCCAAAAGGGAGGTGgtgagtagattgaccacttttgtctccaatctctctggtccatcatgtct Alignment from Exonerate_protein2genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTA-AAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aggttaaggaaacctgcagcattccctctgtcccttctgtcccactgcagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGAGGCTGGACTTACCCAAAGATACAACTACCTAAAAAAGAGGCTCAGACACCCACCAAGAATGGACTCCCCGGGTCCCACCCTGGCTCCCCCAAAAGGGAGGTGgtgagtagattgaccacttttgtctccaatctctctggtccatcatgtct Alignment from Exonerate_coding2genome TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTA-AAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aggttaaggaaacctgcagcattccctctgtcccttctgtcccactgcagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGAGGCTGGACTTACCCAAAGATACAACTACCTAAAAAAGAGGCTCAGACACCCACCAAGAATGGACTCCCCGGGTCCCACCCTGGCTCCCCCAAAAGGGAGGTGgtgagtagattgaccacttttgtctccaatctctctggtccatcatgtct Alignment from GeneWise TCAACAAACGTCTGGATGAATGGGTGACTCACGAGCGGCTGGACTTA-AAGAAGATCCAATTTCCCAAGAAAGAGGCCAAGACACCTACCAAGAACGGACTTCCTGGGTCCCGCCCCGGCTCTCCCGAAAGAGAGGTG aggttaaggaaacctgcagcattccctctgtcccttctgtcccactgcagTCAACAAACGTCTGGATGAGTGGGTAACCCATGAGAGGCTGGACTTACCCAAAGATACAACTACCTAAAAAAGAGGCTCAGACACCCACCAAGAATGGACTCCCCGGGTCCCACCCTGGCTCCCCCAAAAGGGAGGTGgtgagtagattgaccacttttgtctccaatctctctggtccatcatgtct #### Kat5_ID1120_2 --> 0 - 1 Original Alignment GGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGC-AACCAGGACAACGAAGATGAGTGGc gagactagaggcctaccaatacccaccctttttttctattttatctgcagGGGGAGATAATTGAGGGCTGCCGCCTGCCCGTCCTTCGGCGCCAATCAAGATAATGAAGATGAGTGGcgtaattgtgctctgagggccagtccgaagaagctgagggcaaggtgcagg Alignment from CESAR GGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGC-AACCAGGACAACGAAGATGAGTGGc gagactagaggcctaccaatacccaccctttttttctattttatctgcagGGGGAGATAATTGAGGGCTGCCGCCTGCCCGTCCTTCGGCGCCAATCAAGATAATGAAGATGAGTGGcgtaattgtgctctgagggccagtccgaagaagctgagggcaaggtgcagg Alignment from Spaln_aa2Genome GGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGC-AACCAGGACAACGAAGATGAGTGGC gagactagaggcctaccaatacccaccctttttttctattttatctgcagGGGGAGATAATTGAGGGCTGCCGCCTGCCCGTCCTTCGGCGCcAATCAAGATAATGAAGATGAGTGGCgtaattgtgctctgagggccagtccgaagaagctgagggcaaggtgcagg Alignment from Spaln_nt2Genome GGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGC-AACCAGGACAACGAAGATGAGTGGC gagactagaggcctaccaatacccaccctttttttctattttatctgcagGGGGAGATAATTGAGGGCTGCCGCCTGCCCGTCCTTCGGCGCCAATCAAGATAATGAAGATGAGTGGCgtaattgtgctctgagggccagtccgaagaagctgagggcaaggtgcagg Alignment from Pairagon GGGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCG-CAACCAGGACAACGAAGATGAGTGGC gagactagaggcctaccaatacccaccctttttttctattttatctgcaGGGGGAGATAATTGAGGGCTGCCGCCTGCCCGTCCTTCGGCGCCAATCAAGATAATGAAGATGAGTGGCgtaattgtgctctgagggccagtccgaagaagctgagggcaaggtgcagg Alignment from Exonerate_protein2genome GGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGC-AACCAGGACAACGAAGATGAGTGGC gagactagaggcctaccaatacccaccctttttttctattttatctgcagGGGGAGATAATTGAGGGCTGCCGCCTGCCCGTCCTTCGGCGCCAATCAAGATAATGAAGATGAGTGGCgtaattgtgctctgagggccagtccgaagaagctgagggcaaggtgcagg Alignment from Exonerate_coding2genome GGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGGCGC-AACCAGGACAACGAAGATGAGTGGC gagactagaggcctaccaatacccaccctttttttctattttatctgcagGGGGAGATAATTGAGGGCTGCCGCCTGCCCGTCCTTCGGCGCCAATCAAGATAATGAAGATGAGTGGCgtaattgtgctctgagggccagtccgaagaagctgagggcaaggtgcagg Alignment from GeneWise GCGGAGGTGGGGGAGATAATCGAGGGCTGCCGCCTGCCCGTGCTGCGG-CGCAACCAGGACAACGAAGATGAGTGGC gagactagaggcctaccaatacccaccctttttttctattttatctgcag---------GGGGAGATAATTGAGGGCTGCCGCCTGCCCGTCCTTCGGCGCCAATCAAGATAATGAAGATGAGTGGCgtaattgtgctctgagggccagtccgaagaagctgagggcaaggtgcagg #### Kcnip2_ID9603_9 --> 0 - 0 Original Alignment AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAG-TCTTGTCAACAG tgaggaagggtttcactcaactactcatctacccaacctttctttcgcagAAGATGGACAGAATCAAGGATGGTGTGGTGACCATTGAGGAATTCATTGCGCTCTTGTCAACAGgtaagcaaatgagcaagaagggtgggggtctgaaaggctgttctagatcc Alignment from CESAR AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAG-TCTTGTCAACAG tgaggaagggtttcactcaactactcatctacccaacctttctttcgcagAAGATGGACAGAATCAAGGATGGTGTGGTGACCATTGAGGAATTCATTGCGCTCTTGTCAACAGgtaagcaaatgagcaagaagggtgggggtctgaaaggctgttctagatcc Alignment from Spaln_aa2Genome AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAG-TCTTGTCAACAG tgaggaagggtttcactcaactactcatctacccaacctttctttcgcagAAGATGGACAGAATCAAGGATGGTGTGGTGACCATTGAGGAATTCATTGCGcTCTTGTCAACAGgtaagcaaatgagcaagaagggtgggggtctgaaaggctgttctagatcc Alignment from Spaln_nt2Genome AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAG-TCTTGTCAACAG tgaggaagggtttcactcaactactcatctacccaacctttctttcgcagAAGATGGACAGAATCAAGGATGGTGTGGTGACCATTGAGGAATTCATTGCGCTCTTGTCAACAGgtaagcaaatgagcaagaagggtgggggtctgaaaggctgttctagatcc Alignment from Pairagon AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATTGAG-TCTTGTCAACAG tgaggaagggtttcactcaactactcatctacccaacctttctttcgcagAAGATGGACAGAATCAAGGATGGTGTGGTGACCATTGAGGAATTCATTGCGCTCTTGTCAACAGgtaagcaaatgagcaagaagggtgggggtctgaaaggctgttctagatcc Alignment from Exonerate_protein2genome AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATT-GAGTCTTGTCAACAG tgaggaagggtttcactcaactactcatctacccaacctttctttcgcagAAGATGGACAGAATCAAGGATGGTGTGGTGACCATTGAGGAATTCATTGCGCTCTTGTCAACAGgtaagcaaatgagcaagaagggtgggggtctgaaaggctgttctagatcc Alignment from Exonerate_coding2genome AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATT-GAGTCTTGTCAACAG tgaggaagggtttcactcaactactcatctacccaacctttctttcgcagAAGATGGACAGAATCAAGGATGGTGTGGTGACCATTGAGGAATTCATTGCGCTCTTGTCAACAGgtaagcaaatgagcaagaagggtgggggtctgaaaggctgttctagatcc Alignment from GeneWise AAGATGGACAGAAACAAGGACGGCGTGGTGACCATTGAGGAATTCATT tgaggaagggtttcactcaactactcatctacccaacctttctttcgcagAAGATGGACAGAATCAAGGATGGTGTGGTGACCATTGAGGAATTCATTgcgctcttgtcaacaggtaagcaaatgagcaagaagggtgggggtctgaaaggctgttctagatcc #### Kcnip2_ID9604_8 --> 0 - 0 Original Alignment GAAATGCTCGACATCATGAAGTCCATCTAT-GACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG tactatgttaacctcaactagatttcccatctggtcaactctgcttgcagGAAATGATTGACATCATGAAATCCATCTATCGACATGATGGGCAAATACACCTACCCTGCGCTCCGGGAGGAAGCCCCAAGGGAACACGTGGAGAGCTTCTTCCAAgtgagcgggttaactttttgattagcgagatatgtctagtctagtagtta Alignment from CESAR GAAATGCTCGACATCATGAAGTCCATCTAT-GACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG tactatgttaacctcaactagatttcccatctggtcaactctgcttgcagGAAATGATTGACATCATGAAATCCATCTATCGACATGATGGGCAAATACACCTACCCTGCGCTCCGGGAGGAAGCCCCAAGGGAACACGTGGAGAGCTTCTTCCAAgtgagcgggttaactttttgattagcgagatatgtctagtctagtagtta Alignment from Spaln_aa2Genome GAAATGCTCGACATCATGAAGTCCATCTAT-GACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG tactatgttaacctcaactagatttcccatctggtcaactctgcttgcagGAAATGATTGACATCATGAAATCCATCTATcGACATGATGGGCAAATACACCTACCCTGCGCTCCGGGAGGAAGCCCCAAGGGAACACGTGGAGAGCTTCTTCCAAgtgagcgggttaactttttgattagcgagatatgtctagtctagtagtta Alignment from Spaln_nt2Genome GAAATGCTCGACATCATGAAGTCCATCTAT-GACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG tactatgttaacctcaactagatttcccatctggtcaactctgcttgcagGAAATGATTGACATCATGAAATCCATCTATCGACATGATGGGCAAATACACCTACCCTGCGCTCCGGGAGGAAGCCCCAAGGGAACACGTGGAGAGCTTCTTCCAAgtgagcgggttaactttttgattagcgagatatgtctagtctagtagtta Alignment from Pairagon GAAATGCTCGACATCATGAAGTCCATCTAT-GACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG tactatgttaacctcaactagatttcccatctggtcaactctgcttgcagGAAATGATTGACATCATGAAATCCATCTATCGACATGATGGGCAAATACACCTACCCTGCGCTCCGGGAGGAAGCCCCAAGGGAACACGTGGAGAGCTTCTTCCAAgtgagcgggttaactttttgattagcgagatatgtctagtctagtagtta Alignment from Exonerate_protein2genome GAAATGCTCGACATCATGAAGTCCATCTAT-GACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG tactatgttaacctcaactagatttcccatctggtcaactctgcttgcagGAAATGATTGACATCATGAAATCCATCTATCGACATGATGGGCAAATACACCTACCCTGCGCTCCGGGAGGAAGCCCCAAGGGAACACGTGGAGAGCTTCTTCCAAgtgagcgggttaactttttgattagcgagatatgtctagtctagtagtta Alignment from Exonerate_coding2genome GAAATGCTCGACATCATGAAGTCCATCTAT-GACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG tactatgttaacctcaactagatttcccatctggtcaactctgcttgcagGAAATGATTGACATCATGAAATCCATCTATCGACATGATGGGCAAATACACCTACCCTGCGCTCCGGGAGGAAGCCCCAAGGGAACACGTGGAGAGCTTCTTCCAAgtgagcgggttaactttttgattagcgagatatgtctagtctagtagtta Alignment from GeneWise GAAATGCTCGACATCATGAAGTCCATCTAT-GACATGATGGGCAAGTACACCTACCCTGCCCTCCGGGAGGAGGCCCCGAGGGAACACGTGGAGAGCTTCTTCCAG tactatgttaacctcaactagatttcccatctggtcaactctgcttgcagGAAATGATTGACATCATGAAATCCATCTATCGACATGATGGGCAAATACACCTACCCTGCGCTCCGGGAGGAAGCCCCAAGGGAACACGTGGAGAGCTTCTTCCAAgtgagcgggttaactttttgattagcgagatatgtctagtctagtagtta #### Kcnip2_ID9605_7 --> 0 - 0 Original Alignment GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAAC-TTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG gcatccacaccaatgtgtgttagaagagtaaattatgtcttaattcacagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGATAGATTGAATTGGGCTTTCAACCTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtgagtggccactaatgtgacagattatgctaacacatgtcatcaaacac Alignment from CESAR GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAAC-TTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG gcatccacaccaatgtgtgttagaagagtaaattatgtcttaattcacagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGATAGATTGAATTGGGCTTTCAACCTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtgagtggccactaatgtgacagattatgctaacacatgtcatcaaacac Alignment from Spaln_aa2Genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAACTTA-TATGACCTCAACAAGGATGGCTGTATCACGAAGGAG gcatccacaccaatgtgtgttagaagagtaaattatgtcttaattcacagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGATAGATTGAATTGGGCTTTCAACCTTaTATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtgagtggccactaatgtgacagattatgctaacacatgtcatcaaacac Alignment from Spaln_nt2Genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAA-CTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG gcatccacaccaatgtgtgttagaagagtaaattatgtcttaattcacagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGATAGATTGAATTGGGCTTTCAACCTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtgagtggccactaatgtgacagattatgctaacacatgtcatcaaacac Alignment from Pairagon GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAA-CTTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG gcatccacaccaatgtgtgttagaagagtaaattatgtcttaattcacagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGATAGATTGAATTGGGCTTTCAACCTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtgagtggccactaatgtgacagattatgctaacacatgtcatcaaacac Alignment from Exonerate_protein2genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAAC-TTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG gcatccacaccaatgtgtgttagaagagtaaattatgtcttaattcacagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGATAGATTGAATTGGGCTTTCAACCTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtgagtggccactaatgtgacagattatgctaacacatgtcatcaaacac Alignment from Exonerate_coding2genome GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAAC-TTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG gcatccacaccaatgtgtgttagaagagtaaattatgtcttaattcacagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGATAGATTGAATTGGGCTTTCAACCTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtgagtggccactaatgtgacagattatgctaacacatgtcatcaaacac Alignment from GeneWise GACTTTGTGGCTGGTTTGTCAGTGATTCTTCGGGGAACCATAGATGATAGACTGAACTGGGCTTTCAAC-TTATATGACCTCAACAAGGATGGCTGTATCACGAAGGAG gcatccacaccaatgtgtgttagaagagtaaattatgtcttaattcacagGACTTTGTGGCAGGTTTGTCAGTAATCCTTCGAGCAACTATAGATGATAGATTGAATTGGGCTTTCAACCTTATATGACCTCAATAAGGATGGCTGTATCACAAAGGAGgtgagtggccactaatgtgacagattatgctaacacatgtcatcaaacac #### Kcnip2_ID9606_6 --> 2 - 0 Original Alignment acTCCAGCAACTACGCTACTTTTCTCTTCAAT-GCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG agagccaagggaaagtagatatgaaacctctcccttgtttcatcatcaagacTCCAGCAACTATGCTACTTTCCTCTTCAATCGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAAgtgagtcaggaaaaaagatgcattaaagaaactaaccctcttaacctggc Alignment from CESAR acTCCAGCAACTACGCTACTTTTCTCTTCAAT-GCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG agagccaagggaaagtagatatgaaacctctcccttgtttcatcatcaagacTCCAGCAACTATGCTACTTTCCTCTTCAATCGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAAgtgagtcaggaaaaaagatgcattaaagaaactaaccctcttaacctggc Alignment from Spaln_aa2Genome ACTCCAGCAACTACGCTACTTTTCTCTTCAAT-GCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG agagccaagggaaagtagatatgaaacctctcccttgtttcatcatcaagACTCCAGCAACTATGCTACTTTCCTCTTCAATcGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAAgtgagtcaggaaaaaagatgcattaaagaaactaaccctcttaacctggc Alignment from Spaln_nt2Genome ACTCCAGCAACTACGCTACTTTTCTCTTCAAT-GCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG agagccaagggaaagtagatatgaaacctctcccttgtttcatcatcaagACTCCAGCAACTATGCTACTTTCCTCTTCAATCGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAAgtgagtcaggaaaaaagatgcattaaagaaactaaccctcttaacctggc Alignment from Pairagon ACTCCAGCAACTACGCTACTTTTCTCTTCAAT-GCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG agagccaagggaaagtagatatgaaacctctcccttgtttcatcatcaagACTCCAGCAACTATGCTACTTTCCTCTTCAATCGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAAgtgagtcaggaaaaaagatgcattaaagaaactaaccctcttaacctggc Alignment from Exonerate_protein2genome ACTCCAGCAACTACGCTACTTTTCTCTTCAAT-GCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG agagccaagggaaagtagatatgaaacctctcccttgtttcatcatcaagACTCCAGCAACTATGCTACTTTCCTCTTCAATCGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAAgtgagtcaggaaaaaagatgcattaaagaaactaaccctcttaacctggc Alignment from Exonerate_coding2genome ACTCCAGCAACTACGCTACTTTTCTCTTCAAT-GCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG agagccaagggaaagtagatatgaaacctctcccttgtttcatcatcaagACTCCAGCAACTATGCTACTTTCCTCTTCAATCGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAAgtgagtcaggaaaaaagatgcattaaagaaactaaccctcttaacctggc Alignment from GeneWise ACTCCAGCAACTACGCTACTTTTCTCTTCAAT-GCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG agagccaagggaaagtagatatgaaacctctcccttgtttcatcatcaagACTCCAGCAACTATGCTACTTTCCTCTTCAATCGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAAgtgagtcaggaaaaaagatgcattaaagaaactaaccctcttaacctggc #### Kcnip2_ID9607_5 --> 0 - 1 Original Alignment GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTC-TTTCCCCAAGGAg atgtggtgggtcagcccatgtttatgttagcttcttttctgtgttcacagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACTTCAAGCAAGTTTATTCACAGTTCCTTTCCACAAGAGggtaaggggcaggcatccaagaaatctacactgcccataggctgcacaggt Alignment from CESAR GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTC-TTTCCCCAAGGAg atgtggtgggtcagcccatgtttatgttagcttcttttctgtgttcacagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACTTCAAGCAAGTTTATTCACAGTTCCTTTCCACAAGAGggtaaggggcaggcatccaagaaatctacactgcccataggctgcacaggt Alignment from Spaln_aa2Genome GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTC-TTTCCCCAAGGAG atgtggtgggtcagcccatgtttatgttagcttcttttctgtgttcacagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACTTCAAGCAAGTTTATTCACAGTTCcTTTCCACAAGAGGgtaaggggcaggcatccaagaaatctacactgcccataggctgcacaggt Alignment from Spaln_nt2Genome GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTC-TTTCCCCAAGGAG atgtggtgggtcagcccatgtttatgttagcttcttttctgtgttcacagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACTTCAAGCAAGTTTATTCACAGTTCCTTTCCACAAGAGGgtaaggggcaggcatccaagaaatctacactgcccataggctgcacaggt Alignment from Pairagon GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTT-CTTTCCCCAAGGAG atgtggtgggtcagcccatgtttatgttagcttcttttctgtgttcacagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACTTCAAGCAAGTTTATTCACAGTTCCTTTCCACAAGAGGgtaaggggcaggcatccaagaaatctacactgcccataggctgcacaggt Alignment from Exonerate_protein2genome GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTC-TTTCCCCAAGGAG atgtggtgggtcagcccatgtttatgttagcttcttttctgtgttcacagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACTTCAAGCAAGTTTATTCACAGTTCCTTTCCACAAGAGGgtaaggggcaggcatccaagaaatctacactgcccataggctgcacaggt Alignment from Exonerate_coding2genome GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTC-TTTCCCCAAGGAG atgtggtgggtcagcccatgtttatgttagcttcttttctgtgttcacagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACTTCAAGCAAGTTTATTCACAGTTCCTTTCCACAAGAGGgtaaggggcaggcatccaagaaatctacactgcccataggctgcacaggt Alignment from GeneWise GAATGTCCCAGCGGAATTGTCAACGAGGAGAACTTCAAGCAAATTTATTCTCAGTTCTTTCCCCAAGGA-- atgtggtgggtcagcccatgtttatgttagcttcttttctgtgttcacagGAATGTCCCAGTGGCATTGTCAATGAAAAGAACTTCAAGCAAGTTTATTCACAGTTCCTTTCCACAAGAGGgtaaggggcaggcatccaagaaatctacactgcccataggctgcacaggt #### Kif11_ID7313_3 --> 0 - 2 Original Alignment GTGTTTGGAGCATCTACAAAACAA-ATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCgc acaattcttcatctcttcagctgagtataatgcccttttcccttgtgcagGTTTTTGGAGCATCTACAAAACAGCATTGATGTTTATCAAAGTGTTGTCTGTCCAATTCTAGATGACGTAATTATGGGCTACAATTGTACCATTTCTgtgtaagaaacaactttcttctcaagtttggatgatatgtatgggtgtatct Alignment from CESAR GTGTTTGGAGCATCTACAAAACAA-ATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCgc acaattcttcatctcttcagctgagtataatgcccttttcccttgtgcagGTTTTTGGAGCATCTACAAAACAGCATTGATGTTTATCAAAGTGTTGTCTGTCCAATTCTAGATGACGTAATTATGGGCTACAATTGTACCATTTCTgtgtaagaaacaactttcttctcaagtttggatgatatgtatgggtgtatct Alignment from Spaln_aa2Genome GTGTTTGGAGCATCTACAAAACAA-ATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC acaattcttcatctcttcagctgagtataatgcccttttcccttgtgcagGTTTTTGGAGCATCTACAAAACAGcATTGATGTTTATCAAAGTGTTGTCTGTCCAATTCTAGATGACGTAATTATGGGCTACAATTGTACCATTTCTGTgtaagaaacaactttcttctcaagtttggatgatatgtatgggtgtatct Alignment from Spaln_nt2Genome GTGTTTGGAGCATCTACAAAACAA-ATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC acaattcttcatctcttcagctgagtataatgcccttttcccttgtgcagGTTTTTGGAGCATCTACAAAACAGCATTGATGTTTATCAAAGTGTTGTCTGTCCAATTCTAGATGACGTAATTATGGGCTACAATTGTACCATTTCTGTgtaagaaacaactttcttctcaagtttggatgatatgtatgggtgtatct Alignment from Pairagon GTGTTTGGAGCATCTACAAAACAA-ATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC acaattcttcatctcttcagctgagtataatgcccttttcccttgtgcagGTTTTTGGAGCATCTACAAAACAGCATTGATGTTTATCAAAGTGTTGTCTGTCCAATTCTAGATGACGTAATTATGGGCTACAATTGTACCATTTCTGTgtaagaaacaactttcttctcaagtttggatgatatgtatgggtgtatct Alignment from Exonerate_protein2genome GTGTTTGGAGCATCTACAAAACAA-ATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC acaattcttcatctcttcagctgagtataatgcccttttcccttgtgcagGTTTTTGGAGCATCTACAAAACAGCATTGATGTTTATCAAAGTGTTGTCTGTCCAATTCTAGATGACGTAATTATGGGCTACAATTGTACCATTTCTGTgtaagaaacaactttcttctcaagtttggatgatatgtatgggtgtatct Alignment from Exonerate_coding2genome GTGTTTGGAGCATCTACAAAACAA-ATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC acaattcttcatctcttcagctgagtataatgcccttttcccttgtgcagGTTTTTGGAGCATCTACAAAACAGCATTGATGTTTATCAAAGTGTTGTCTGTCCAATTCTAGATGACGTAATTATGGGCTACAATTGTACCATTTCTGTgtaagaaacaactttcttctcaagtttggatgatatgtatgggtgtatct Alignment from GeneWise GCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAAGTTATTATGGGCTATAATTGCACCATCTTCGC acaattcttcatctcttcagctgagtataatgcccttttcccttgtgcaggtttttggagCATCTACAAAACAGCATTGATGTTTATCAAAGTGTTGTCTGTCCAATTCTAGATGACGTAATTATGGGCTACAATTGTACCATTTCTGTgtaagaaacaactttcttctcaagtttggatgatatgtatgggtgtatct #### Kif20b_ID7002_7 --> 2 - 1 Original Alignment gaCACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGA-CTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAg gcaaagtgacaaacattgcagtcaaagttttgctcgcttgtaccttttagggCACTTTACAAACTCTCTAACTATCCCAGAGTTCGAAGAACCTGTGAACAGG---------TCCAGTCTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCTTTCTTTGAAATTTACAACAAAAGCATTTATGACTTGTTTGTGCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTGCGACATTTCCCAGGACATAAAGGGGTATTCTTTTATAAAAggtgagctagtgaccatcttgttaaagaagcagcatactttctaaatattt Alignment from CESAR gaCACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGA-CTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAg gcaaagtgacaaacattgcagtcaaagttttgctcgcttgtaccttttagggCACTTTACAAACTCTCTAACTATCCCAGAGTTCGAAGAACCTGTGAAC---------AGGTCCAGTCTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCTTTCTTTGAAATTTACAACAAAAGCATTTATGACTTGTTTGTGCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTGCGACATTTCCCAGGACATAAAGGGGTATTCTTTTATAAAAggtgagctagtgaccatcttgttaaagaagcagcatactttctaaatattt Alignment from Spaln_aa2Genome GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGA-CTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG gcaaagtgacaaacattgcagtcaaagttttgctcgcttgtaccttttagGGCACTTTACAAACTCTCTAACTATCCCAGAGTTCGAAGAACCTGTGAAC---------AGGTCCAGTCTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCTTTCTTTGAAATTTACAACAAAAGCATTTATGACTTGTTTGTGCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTGCGAcATTTCCCAGGACATAAAGGGGTATTCTTTTATAAAAGgtgagctagtgaccatcttgttaaagaagcagcatactttctaaatattt Alignment from Spaln_nt2Genome GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGAC-TTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG gcaaagtgacaaacattgcagtcaaagttttgctcgcttgtaccttttagGGCACTTTACAAACTCTCTAACTATCCCAGAGTTCGAAGAACCTGTGAACAG---------GTCCAGTCTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCTTTCTTTGAAATTTACAACAAAAGCATTTATGACTTGTTTGTGCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTGCGACATTTCCCAGGACATAAAGGGGTATTCTTTTATAAAAGgtgagctagtgaccatcttgttaaagaagcagcatactttctaaatattt Alignment from Pairagon GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGAC-TTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG gcaaagtgacaaacattgcagtcaaagttttgctcgcttgtaccttttagGGCACTTTACAAACTCTCTAACTATCCCAGAGTTCGAAGAACCTGTGAACAG---------GTCCAGTCTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCTTTCTTTGAAATTTACAACAAAAGCATTTATGACTTGTTTGTGCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTGCGACATTTCCCAGGACATAAAGGGGTATTCTTTTATAAAAGgtgagctagtgaccatcttgttaaagaagcagcatactttctaaatattt Alignment from Exonerate_protein2genome GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGA-CTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG gcaaagtgacaaacattgcagtcaaagttttgctcgcttgtaccttttagGGCACTTTACAAACTCTCTAACTATCCCAGAGTTCGAAGAACCTGTGAAC---------AGGTCCAGTCTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCTTTCTTTGAAATTTACAACAAAAGCATTTATGACTTGTTTGTGCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTGCGACATTTCCCAGGACATAAAGGGGTATTCTTTTATAAAAGgtgagctagtgaccatcttgttaaagaagcagcatactttctaaatattt Alignment from Exonerate_coding2genome GTTACCATACATAATGACAGTTATGACGTTCTTTGTGGACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGT----TTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGA-CTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG gcaaAGTGACAAACATTGCAGTCAAAGTTTTGCTCGCTTGTACCTTTTAGGGCACTTTACAAACTCTCTAACTATCCCAGAGTTCGAAGAACCTGTGAACAGGTCCAGTCTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCTTTC----TTTGAAATTTACAACAAAAGCATTTATGACTTGTTTGTGCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTGCGACATTTCCCAGGACATAAAGGGGTATTCTTTTATAAAAGgtgagctagtgaccatcttgttaaagaagcagcatactttctaaatattt Alignment from GeneWise GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTACGA-CTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG gcaaagtgacaaacattgcagtcaaagttttgctcgcttgtaccttttagGGCACTTTACAAACTCTCTAACTATCCCAGAGTTCGAAGAACCTGTGAAC---------AGGTCCAGTCTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCTTTCTTTGAAATTTACAACAAAAGCATTTATGACTTGTTTGTGCCTGTGTCCTCTAAGTTTCAAAAGAGAAAAATGTTGCGACATTTCCCAGGACATAAAGGGGTATTCTTTTATAAAAGgtgagctagtgaccatcttgttaaagaagcagcatactttctaaatattt #### Kif20b_ID7004_9 --> 1 - 2 Original Alignment tCACAGCATATTCACTATTAGAATATTACAG-ATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTga gaaatgttgcatgaaaatattatatttgcctgtctgcactcttcacacagtCATAGCATATTCACTATCAGACTATTACAACATAGAAGATTCTGAGATACCTCGTGTTACACGAGTTAGTgagtaagtggggtcattttggaagttgggggtttttttggaataaaagtctt Alignment from CESAR tCACAGCATATTCACTATTAGAATATTACAG-ATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTga gaaatgttgcatgaaaatattatatttgcctgtctgcactcttcacacagtCATAGCATATTCACTATCAGACTATTACAACATAGAAGATTCTGAGATACCTCGTGTTACACGAGTTAGTgagtaagtggggtcattttggaagttgggggtttttttggaataaaagtctt Alignment from Spaln_aa2Genome TCACAGCATATTCACTATTAGAATATTACAG-ATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTGA gaaatgttgcatgaaaatattatatttgcctgtctgcactcttcacacagTCATAGCATATTCACTATCAGACTATTACAAcATAGAAGATTCTGAGATACCTCGTGTTACACGAGTTAGTGAgtaagtggggtcattttggaagttgggggtttttttggaataaaagtctt Alignment from Spaln_nt2Genome TCACAGCATATTCACTATTAGAATATTACAG-ATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTGA gaaatgttgcatgaaaatattatatttgcctgtctgcactcttcacacagTCATAGCATATTCACTATCAGACTATTACAACATAGAAGATTCTGAGATACCTCGTGTTACACGAGTTAGTGAgtaagtggggtcattttggaagttgggggtttttttggaataaaagtctt Alignment from Pairagon TCACAGCATATTCACTATTAGAATATTACAG-ATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTGA gaaatgttgcatgaaaatattatatttgcctgtctgcactcttcacacagTCATAGCATATTCACTATCAGACTATTACAACATAGAAGATTCTGAGATACCTCGTGTTACACGAGTTAGTGAgtaagtggggtcattttggaagttgggggtttttttggaataaaagtctt Alignment from Exonerate_protein2genome TCACAGCATATTCACTATTAGAATATTACAG-ATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTGA gaaatgttgcatgaaaatattatatttgcctgtctgcactcttcacacagTCATAGCATATTCACTATCAGACTATTACAACATAGAAGATTCTGAGATACCTCGTGTTACACGAGTTAGTGAgtaagtggggtcattttggaagttgggggtttttttggaataaaagtctt Alignment from Exonerate_coding2genome TCACAGCATATTCACTATTAGAATATTACAG-ATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTGA gaaatgttgcatgaaaatattatatttgcctgtctgcactcttcacacagTCATAGCATATTCACTATCAGACTATTACAACATAGAAGATTCTGAGATACCTCGTGTTACACGAGTTAGTGAgtaagtggggtcattttggaagttgggggtttttttggaataaaagtctt Alignment from GeneWise TCACAGCATATTCACTATTAGAATATTACAG-ATAGAAGATTCTGAAATACCTCGTGTAACACGAGTTAGTGA gaaatgttgcatgaaaatattatatttgcctgtctgcactcttcacacagTCATAGCATATTCACTATCAGACTATTACAACATAGAAGATTCTGAGATACCTCGTGTTACACGAGTTAGTGAgtaagtggggtcattttggaagttgggggtttttttggaataaaagtctt #### Klc2_ID852_14 --> 1 - 0 Original Alignment gATGAAGAGGGCCAGCTCTCTT-AACTTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAG tctttcgctcccaggatgaagagggccaaaccttgtcactgtctcagcaggATGAAGAGGGCCAGCTCTCTTCAACTTCCTTAATAAGAGTGTCCGGAAACCC---CAGgtaagtatgaggatataattatactaagtagcctatacttgcagatgcag Alignment from CESAR gATGAAGAGGGCCAGCTCTCTT-AACTTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAG tctttcgctcccaggatgaagagggccaaaccttgtcactgtctcagcaggATGAAGAGGGCCAGCTCTCTTCAACTTCCTTAATAAGAGTGTCCGGAAACCC---CAGgtaagtatgaggatataattatactaagtagcctatacttgcagatgcag Alignment from Spaln_aa2Genome GATGAAGAGGGCCAGCTCTCTT-AACTTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAG tctttcgctcccaggatgaagagggccaaaccttgtcactgtctcagcagGATGAAGAGGGCCAGCTCTCTTcAACTTCCTTAATAAGAGTGTCCGGAAACCC---CAGgtaagtatgaggatataattatactaagtagcctatacttgcagatgcag Alignment from Spaln_nt2Genome GATGAAGAGGGCCAGCTCTCTT-AACTTCCTTAACAAGAGTGTGGAAGAGCCAGTCCAG tctttcgctcccaggatgaagagggccaaaccttgtcactgtctcagcagGATGAAGAGGGCCAGCTCTCTTCAACTTCCTTAATAAGAGTGTCCGGAAACC---CCAGgtaagtatgaggatataattatactaagtagcctatacttgcagatgcag Alignment from Pairagon GATGAAGAGGGCCAGCTCTCTT-AACTTCCTTAACAAGAGTGT--GGAAGAGCCAGTCCAG tctttcgctcccaggatgaagagggccaaaccttgtcactgtctcagcagGATGAAGAGGGCCAGCTCTCTTCAACTTCCTTAATAAGAGTGTCCGGAA-----ACCCCAGgtaagtatgaggatataattatactaagtagcctatacttgcagatgcag Alignment from Exonerate_protein2genome GATGAAGAGGGCCAGCTCTCTT-AACTTCCTTAACAAGAGTGTGGAAGAGCCAGTC tctttcgctcccaggatgaagagggccaaaccttgtcactgtctcagcagGATGAAGAGGGCCAGCTCTCTTCAACTTCCTTAATAAGAGTGTCCGGAAACCCCAGgtaagtatgaggatataattatactaagtagcctatacttgcagatgcag Alignment from Exonerate_coding2genome tctttcgctcccaggatgaagagggccaaaccttgtcactgtctcagcaggatgaagagggccagctctcttcaacttccttaataagagtgtccggaaaccccaggtaagtatgaggatataattatactaagtagcctatacttgcagatgcag Alignment from GeneWise tctttcgctcccaggatgaagagggccaaaccttgtcactgtctcagcaggatgaagagggccagctctcttcaacttccttaataagagtgtccggaaaccccaggtaagtatgaggatataattatactaagtagcctatacttgcagatgcag #### Klc2_ID863_3 --> 0 - 1 Original Alignment GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTT-CCCAATGAAGATGAACAGAGCCCAg gctatctgcatgtgccatctgctgcttagggaaggtatctttgttttcagAAGGAGAAGGGTGATGTTCCCAAAGACTCCCTCGATGACCTGTTTCCCCAATGAAGATGAACAGAGGTCGggtaaagaggggtaattagctatggcagttagctaggagtttggagagggt Alignment from CESAR GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTT-CCCAATGAAGATGAACAGAGCCCAg gctatctgcatgtgccatctgctgcttagggaaggtatctttgttttcagAAGGAGAAGGGTGATGTTCCCAAAGACTCCCTCGATGACCTGTTTCCCCAATGAAGATGAACAGAGGTCGggtaaagaggggtaattagctatggcagttagctaggagtttggagagggt Alignment from Spaln_aa2Genome GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTG-TTTCCCAATGAAGATGAACAGAGCCCAG gctatctgcatgtgccatctgctgcttagggaaggtatctttgttttcagAAGGAGAAGGGTGATGTTCCCAAAGACTCCCTCGATGACCTGtTTCCCCAATGAAGATGAACAGAGGTCGGgtaaagaggggtaattagctatggcagttagctaggagtttggagagggt Alignment from Spaln_nt2Genome GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTTCC-CAATGAAGATGAACAGAGCCCAG gctatctgcatgtgccatctgctgcttagggaaggtatctttgttttcagAAGGAGAAGGGTGATGTTCCCAAAGACTCCCTCGATGACCTGTTTCCCCAATGAAGATGAACAGAGGTCGGgtaaagaggggtaattagctatggcagttagctaggagtttggagagggt Alignment from Pairagon GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTGTTT-CCCAATGAAGATGAACAGAGCCCAG gctatctgcatgtgccatctgctgcttagggaaggtatctttgttttcagAAGGAGAAGGGTGATGTTCCCAAAGACTCCCTCGATGACCTGTTTCCCCAATGAAGATGAACAGAGGTCGGgtaaagaggggtaattagctatggcagttagctaggagtttggagagggt Alignment from Exonerate_protein2genome GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGACCTG-TTTCCCAATGAAGATGAACAGAGCCCAG gctatctgcatgtgccatctgctgcttagggaaggtatctttgttttcagAAGGAGAAGGGTGATGTTCCCAAAGACTCCCTCGATGACCTGTTTCCCCAATGAAGATGAACAGAGGTCGGgtaaagaggggtaattagctatggcagttagctaggagtttggagagggt Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAGGAGAAGGGTGATGTCCCCAAAGACTCCCTGGATGAC-CTGTTTCCCAATGAAGATGAACAGAGCCCAG gctatctgcatgtgccatctgctgcttagggaaggtatctttgttttcagAAGGAGAAGGGTGATGTTCCCAAAGACTCCCTCGATGACCTGTTTCCCCAATGAAGATGAACAGAGGTCGGgtaaagaggggtaattagctatggcagttagctaggagtttggagagggt #### Ldb1_ID9692_8 --> 0 - 0 Original Alignment GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAAT-TCCACTCTCAACTACCTCCGA attggagtccacttcttggtcaggtgatgtagtgctcattgccacctcagGCTCAGGACCCCCAGATGCTGGATCAACTGTCCAAAAACATTACTCGATGTGGGTTGTCAAATCACAGCTCTCAACTACTTTCGGgtaagtgccagatgaccataccagtaattagattcttctttccagtagag Alignment from CESAR GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAAT-TCCACTCTCAACTACCTCCGA attggagtccacttcttggtcaggtgatgtagtgctcattgccacctcagGCTCAGGACCCCCAGATGCTGGATCAACTGTCCAAAAACATTACTCGATGTGGGTTGTCAAATCACAGCTCTCAACTACTTTCGGgtaagtgccagatgaccataccagtaattagattcttctttccagtagag Alignment from Spaln_aa2Genome GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCT attggagtccacttcttggtcaggtgatgtagtgctcattgccacctcagGCTCAGGACCCCCAGATGCTGGATCAACTGTCCAAAAACATTACTCGATGTGGGTTgtcaaatcacagctctcaactactttcgggtaagtgccagatgaccataccagtaattagattcttctttccagtagag Alignment from Spaln_nt2Genome GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCA-CTCTCAACTACCTCCGA attggagtccacttcttggtcaggtgatgtagtgctcattgccacctcagGCTCAGGACCCCCAGATGCTGGATCAACTGTCCAAAAACATTACTCGATGTGGGTTGTCAAATCACAGCTCTCAACTACTTTCGGgtaagtgccagatgaccataccagtaattagattcttctttccagtagag Alignment from Pairagon GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAATTCCA-CTCTCAACTACCTCCGA attggagtccacttcttggtcaggtgatgtagtgctcattgccacctcagGCTCAGGACCCCCAGATGCTGGATCAACTGTCCAAAAACATTACTCGATGTGGGTTGTCAAATCACAGCTCTCAACTACTTTCGGgtaagtgccagatgaccataccagtaattagattcttctttccagtagag Alignment from Exonerate_protein2genome GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAAT-TCCACTCTCAACTACCTCCGA attggagtccacttcttggtcaggtgatgtagtgctcattgccacctcagGCTCAGGACCCCCAGATGCTGGATCAACTGTCCAAAAACATTACTCGATGTGGGTTGTCAAATCACAGCTCTCAACTACTTTCGGgtaagtgccagatgaccataccagtaattagattcttctttccagtagag Alignment from Exonerate_coding2genome GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCTGTCCAAT-TCCACTCTCAACTACCTCCGA attggagtccacttcttggtcaggtgatgtagtgctcattgccacctcagGCTCAGGACCCCCAGATGCTGGATCAACTGTCCAAAAACATTACTCGATGTGGGTTGTCAAATCACAGCTCTCAACTACTTTCGGgtaagtgccagatgaccataccagtaattagattcttctttccagtagag Alignment from GeneWise GCCCAGGACCCCCAGATGCTGGATCAGCTGTCCAAAAACATTACCCGGTGTGGGCT attggagtccacttcttggtcaggtgatgtagtgctcattgccacctcagGCTCAGGACCCCCAGATGCTGGATCAACTGTCCAAAAACATTACTCGATGTGGGTTgtcaaatcacagctctcaactactttcgggtaagtgccagatgaccataccagtaattagattcttctttccagtagag #### Ldb1_ID9693_7 --> 0 - 0 Original Alignment GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCAC-TTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC caattgtagtaaatgaccaaggcaaaggatctaaactttgttttctgcagGTGTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACCTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCCATGCATgtgaggttgtgccagcaccacctgagataagggcattggagtccacttct Alignment from CESAR GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCAC-TTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC caattgtagtaaatgaccaaggcaaaggatctaaactttgttttctgcagGTGTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACCTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCCATGCATgtgaggttgtgccagcaccacctgagataagggcattggagtccacttct Alignment from Spaln_aa2Genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCAC-TTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC caattgtagtaaatgaccaaggcaaaggatctaaactttgttttctgcagGTGTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACcTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCCATGCATgtgaggttgtgccagcaccacctgagataagggcattggagtccacttct Alignment from Spaln_nt2Genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCA-CTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGC caattgtagtaaatgaccaaggcaaaggatctaaactttgttttctgcagGTGTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACCTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCCATGCatgtgaggttgtgccagcaccacctgagataagggcattggagtccacttct Alignment from Pairagon GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCA-CTTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC caattgtagtaaatgaccaaggcaaaggatctaaactttgttttctgcagGTGTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACCTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCCATGCATgtgaggttgtgccagcaccacctgagataagggcattggagtccacttct Alignment from Exonerate_protein2genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCAC-TTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC caattgtagtaaatgaccaaggcaaaggatctaaactttgttttctgcagGTGTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACCTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCCATGCATgtgaggttgtgccagcaccacctgagataagggcattggagtccacttct Alignment from Exonerate_coding2genome GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCAC-TTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC caattgtagtaaatgaccaaggcaaaggatctaaactttgttttctgcagGTGTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACCTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCCATGCATgtgaggttgtgccagcaccacctgagataagggcattggagtccacttct Alignment from GeneWise GTGTGTGTGGAAGGCCGGTTGTACCTGGAGTTCATGTTTGACGACATGATGCGGATAAAGACGTGGCAC-TTCAGCATCCGGCAACACAGAGAGCTCATCCCCAGAAGTATCCTGGCCATGCAC caattgtagtaaatgaccaaggcaaaggatctaaactttgttttctgcagGTGTGTGTAGAAGGACGGCTGTACTTGGAGTTCATGTTTGATGACATGATGCGGATAAAGACATGGCACCTTCAGCATCCAGCAGCACAGAGAACTTATTCCAAGAAGTATCCTGGCCATGCATgtgaggttgtgccagcaccacctgagataagggcattggagtccacttct #### Ldb1_ID9694_6 --> 2 - 0 Original Alignment ccATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAAC-TTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG ttcacatgtgacctctgctggtcctgaactgtgttgttttgattttctagccATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACCTTTGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCAAACCCATGTTTACCCAGgtaagaaagctgtaagcacagtgaaacccgatatagtgacacaatcttgc Alignment from CESAR ccATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAAC-TTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG ttcacatgtgacctctgctggtcctgaactgtgttgttttgattttctagccATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACCTTTGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCAAACCCATGTTTACCCAGgtaagaaagctgtaagcacagtgaaacccgatatagtgacacaatcttgc Alignment from Spaln_aa2Genome CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAAC-TTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG ttcacatgtgacctctgctggtcctgaactgtgttgttttgattttctagCCATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACcTTTGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCAAACCCATGTTTACCCAGgtaagaaagctgtaagcacagtgaaacccgatatagtgacacaatcttgc Alignment from Spaln_nt2Genome CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAA-CTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG ttcacatgtgacctctgctggtcctgaactgtgttgttttgattttctagCCATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACCTTTGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCAAACCCATGTTTACCCAGgtaagaaagctgtaagcacagtgaaacccgatatagtgacacaatcttgc Alignment from Pairagon CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAA-CTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG ttcacatgtgacctctgctggtcctgaactgtgttgttttgattttctagCCATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACCTTTGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCAAACCCATGTTTACCCAGgtaagaaagctgtaagcacagtgaaacccgatatagtgacacaatcttgc Alignment from Exonerate_protein2genome CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAAC-TTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG ttcacatgtgacctctgctggtcctgaactgtgttgttttgattttctagCCATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACCTTTGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCAAACCCATGTTTACCCAGgtaagaaagctgtaagcacagtgaaacccgatatagtgacacaatcttgc Alignment from Exonerate_coding2genome CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAAC-TTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG ttcacatgtgacctctgctggtcctgaactgtgttgttttgattttctagCCATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACCTTTGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCAAACCCATGTTTACCCAGgtaagaaagctgtaagcacagtgaaacccgatatagtgacacaatcttgc Alignment from GeneWise CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGC-AACTTCGTGTCCCTCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG ttcacatgtgacctctgctggtcctgaactgtgttgttttgattttctagCCATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACCTTTGTGTCCCTTGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCAAACCCATGTTTACCCAGgtaagaaagctgtaagcacagtgaaacccgatatagtgacacaatcttgc #### Lipa_ID6938_5 --> 2 - 0 Original Alignment gtTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTA-GTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgattgaaacctgttcaagctcaggtctcaactctcttctctctttaaggtTTCATAGCTTTTTCACAAATGCCTGAGTTGGCCAAGAAGATCAAAATGTTTTTACGCCTTGTCTCCAGTGTTGTCTCTCAATTTTGCTTCTGGTCCACTATTGCAATTGGGACACTTGCCTGATCCACTGCTCAAAgtaattggtttactgatgtcttgtagatttgatagtctatttgaaagtgc Alignment from CESAR gtTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTA-GTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgattgaaacctgttcaagctcaggtctcaactctcttctctctttaaggtTTCATAGCTTTTTCACAAATGCCTGAGTTGGCCAAGAAGATCAAAATGTTTTTACGCCTTGTCTCCAGTGTTGTCTCTCAATTTTGCTTCTGGTCCACTATTGCAATTGGGACACTTGCCTGATCCACTGCTCAAAgtaattggtttactgatgtcttgtagatttgatagtctatttgaaagtgc Alignment from Spaln_aa2Genome GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTA-GTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgattgaaacctgttcaagctcaggtctcaactctcttctctctttaagGTTTCATAGCTTTTTCACAAATGCCTGAGTTGGCCAAGAAGATCAAAATGTTTTTAcGCCTTGTCTCCAGTGTTGTCTCTCAATTTTGCTTCTGGTCCACTATTGCAATTGGGACACTTGCCTGATCCACTGCTCAAAgtaattggtttactgatgtcttgtagatttgatagtctatttgaaagtgc Alignment from Spaln_nt2Genome GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTA-GTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgattgaaacctgttcaagctcaggtctcaactctcttctctctttaagGTTTCATAGCTTTTTCACAAATGCCTGAGTTGGCCAAGAAGATCAAAATGTTTTTACGCCTTGTCTCCAGTGTTGTCTCTCAATTTTGCTTCTGGTCCACTATTGCAATTGGGACACTTGCCTGATCCACTGCTCAAAgtaattggtttactgatgtcttgtagatttgatagtctatttgaaagtgc Alignment from Pairagon GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTA-GTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgattgaaacctgttcaagctcaggtctcaactctcttctctctttaagGTTTCATAGCTTTTTCACAAATGCCTGAGTTGGCCAAGAAGATCAAAATGTTTTTACGCCTTGTCTCCAGTGTTGTCTCTCAATTTTGCTTCTGGTCCACTATTGCAATTGGGACACTTGCCTGATCCACTGCTCAAAgtaattggtttactgatgtcttgtagatttgatagtctatttgaaagtgc Alignment from Exonerate_protein2genome GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTA-GTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgattgaaacctgttcaagctcaggtctcaactctcttctctctttaagGTTTCATAGCTTTTTCACAAATGCCTGAGTTGGCCAAGAAGATCAAAATGTTTTTACGCCTTGTCTCCAGTGTTGTCTCTCAATTTTGCTTCTGGTCCACTATTGCAATTGGGACACTTGCCTGATCCACTGCTCAAAgtaattggtttactgatgtcttgtagatttgatagtctatttgaaagtgc Alignment from Exonerate_coding2genome GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTA-GTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgattgaaacctgttcaagctcaggtctcaactctcttctctctttaagGTTTCATAGCTTTTTCACAAATGCCTGAGTTGGCCAAGAAGATCAAAATGTTTTTACGCCTTGTCTCCAGTGTTGTCTCTCAATTTTGCTTCTGGTCCACTATTGCAATTGGGACACTTGCCTGATCCACTGCTCAAAgtaattggtttactgatgtcttgtagatttgatagtctatttgaaagtgc Alignment from GeneWise GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTA-GTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG ttgattgaaacctgttcaagctcaggtctcaactctcttctctctttaagGTTTCATAGCTTTTTCACAAATGCCTGAGTTGGCCAAGAAGATCAAAATGTTTTTACGCCTTGTCTCCAGTGTTGTCTCTCAATTTTGCTTCTGGTCCACTATTGCAATTGGGACACTTGCCTGATCCACTGCTCAAAgtaattggtttactgatgtcttgtagatttgatagtctatttgaaagtgc #### Ltbp3_ID1253_5 --> 2 - 1 Original Alignment atACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAG-GTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGg cccagtgcccacccccttttgtcactgtctttttccatcttttctaacagatACAGGAGTGCAGAAGCCTGGACCTGTACGAGGGGAGCGTGGGTGCTGACTGCCCCAAGGGCTATAAGAGACTTAACAGCACCCATTCTCAGggtaagtgttacctggagattctgttaactgttagatggaccagtggtcag Alignment from CESAR atACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAG-GTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGg cccagtgcccacccccttttgtcactgtctttttccatcttttctaacagatACAGGAGTGCAGAAGCCTGGACCTGTACGAGGGGAGCGTGGGTGCTGACTGCCCCAAGGGCTATAAGAGACTTAACAGCACCCATTCTCAGggtaagtgttacctggagattctgttaactgttagatggaccagtggtcag Alignment from Spaln_aa2Genome ATACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAGGTGGGT-GCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGG cccagtgcccacccccttttgtcactgtctttttccatcttttctaacagATACAGGAGTGCAGAAGCCTGGACCTGTACGAGGGGAGCGTGGGtGCTGACTGCCCCAAGGGCTATAAGAGACTTAACAGCACCCATTCTCAGGgtaagtgttacctggagattctgttaactgttagatggaccagtggtcag Alignment from Spaln_nt2Genome ATACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAG-GTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGG cccagtgcccacccccttttgtcactgtctttttccatcttttctaacagATACAGGAGTGCAGAAGCCTGGACCTGTACGAGGGGAGCGTGGGTGCTGACTGCCCCAAGGGCTATAAGAGACTTAACAGCACCCATTCTCAGGgtaagtgttacctggagattctgttaactgttagatggaccagtggtcag Alignment from Pairagon ATACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAG-GTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGG cccagtgcccacccccttttgtcactgtctttttccatcttttctaacagATACAGGAGTGCAGAAGCCTGGACCTGTACGAGGGGAGCGTGGGTGCTGACTGCCCCAAGGGCTATAAGAGACTTAACAGCACCCATTCTCAGGgtaagtgttacctggagattctgttaactgttagatggaccagtggtcag Alignment from Exonerate_protein2genome ATACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAG-GTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGG cccagtgcccacccccttttgtcactgtctttttccatcttttctaacagATACAGGAGTGCAGAAGCCTGGACCTGTACGAGGGGAGCGTGGGTGCTGACTGCCCCAAGGGCTATAAGAGACTTAACAGCACCCATTCTCAGGgtaagtgttacctggagattctgttaactgttagatggaccagtggtcag Alignment from Exonerate_coding2genome ATACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAG-GTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGG cccagtgcccacccccttttgtcactgtctttttccatcttttctaacagATACAGGAGTGCAGAAGCCTGGACCTGTACGAGGGGAGCGTGGGTGCTGACTGCCCCAAGGGCTATAAGAGACTTAACAGCACCCATTCTCAGGgtaagtgttacctggagattctgttaactgttagatggaccagtggtcag Alignment from GeneWise ATACAGGGGTGCAGAAGCCTGGACCTGTACGTGGGGAG-GTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGG cccagtgcccacccccttttgtcactgtctttttccatcttttctaacagATACAGGAGTGCAGAAGCCTGGACCTGTACGAGGGGAGCGTGGGTGCTGACTGCCCCAAGGGCTATAAGAGACTTAACAGCACCCATTCTCAGGgtaagtgttacctggagattctgttaactgttagatggaccagtggtcag #### Ltbp3_ID1255_7 --> 2 - 1 Original Alignment ccGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGT-AAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAg gcaccagaaaggtggcagctccacgctctcctcttctgtttccttctcagctGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCACCCTCTGACTACACGTTTAACCCACCAGCTTTGCTGTTGTAGTGTTGGTCAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAggtaacctcgaagagccttgggaatgacaggacaaacttgtgtgccaggcc Alignment from CESAR ccGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGT-AAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAg gcaccagaaaggtggcagctccacgctctcctcttctgtttccttctcagctGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCACCCTCTGACTACACGTTTAACCCACCAGCTTTGCTGTTGTAGTGTTGGTCAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAggtaacctcgaagagccttgggaatgacaggacaaacttgtgtgccaggcc Alignment from Spaln_aa2Genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGT-AAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gcaccagaaaggtggcagctccacgctctcctcttctgtttccttctcagCTGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCACCCTCTGACTACACGTTTAACCCACCAGCTTTGCTGTTGTAGTGTTGGTcAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAGgtaacctcgaagagccttgggaatgacaggacaaacttgtgtgccaggcc Alignment from Spaln_nt2Genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGT-AAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gcaccagaaaggtggcagctccacgctctcctcttctgtttccttctcagCTGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCACCCTCTGACTACACGTTTAACCCACCAGCTTTGCTGTTGTAGTGTTGGTCAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAGgtaacctcgaagagccttgggaatgacaggacaaacttgtgtgccaggcc Alignment from Pairagon CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGT-AAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gcaccagaaaggtggcagctccacgctctcctcttctgtttccttctcagCTGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCACCCTCTGACTACACGTTTAACCCACCAGCTTTGCTGTTGTAGTGTTGGTCAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAGgtaacctcgaagagccttgggaatgacaggacaaacttgtgtgccaggcc Alignment from Exonerate_protein2genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGT-AAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gcaccagaaaggtggcagctccacgctctcctcttctgtttccttctcagCTGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCACCCTCTGACTACACGTTTAACCCACCAGCTTTGCTGTTGTAGTGTTGGTCAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAGgtaacctcgaagagccttgggaatgacaggacaaacttgtgtgccaggcc Alignment from Exonerate_coding2genome CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGT-AAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gcaccagaaaggtggcagctccacgctctcctcttctgtttccttctcagCTGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCACCCTCTGACTACACGTTTAACCCACCAGCTTTGCTGTTGTAGTGTTGGTCAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAGgtaacctcgaagagccttgggaatgacaggacaaacttgtgtgccaggcc Alignment from GeneWise CCGACAAACCAGAGGAGAAGAGCCTGTGTTTCCGCCTTGTGAGCACCGAACACCAGTGCCAGCACCCTCTGACCACACGCCTAACCCGCCAGCTCTGCTGCTGTAGTGTGGGT-AAAGCCTGGGGTGCCCGGTGCCAGCGCTGCCCGGCAGATGGTACAG gcaccagaaaggtggcagctccacgctctcctcttctgtttccttctcagCTGACAAACCAAAGGAGAAAAGCTTGTGTTTCCGCCTTGTGAGCACTGAACACCAGTGCCAGCACCCTCTGACTACACGTTTAACCCACCAGCTTTGCTGTTGTAGTGTTGGTCAAAGCTTGGGGGGCCCGGTGCCAGCGTTGCCCAGCAGATGGCACAGgtaacctcgaagagccttgggaatgacaggacaaacttgtgtgccaggcc #### Ltbp3_ID1270_22 --> 2 - 1 Original Alignment acATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTAC-GAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGg acatctgagtaataggccactgcgaacttttatttatttttcctttgcagacATTGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTTTGTGAACACGCAGCCTGGCTATCGAGTGCTACTGCAAGCAGGGCTTCTATTACGATGGTAATCTTTTAGAGTGTGTAggtgagctagactatagtgctacccaaggaacagctgaacatatgtttcct Alignment from CESAR acATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTAC-GAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGg acatctgagtaataggccactgcgaacttttatttatttttcctttgcagacATTGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTTTGTGAACACGCAGCCTGGCTATCGAGTGCTACTGCAAGCAGGGCTTCTATTACGATGGTAATCTTTTAGAGTGTGTAggtgagctagactatagtgctacccaaggaacagctgaacttttttttttt Alignment from Spaln_aa2Genome ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTAC-GAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG acatctgagtaataggccactgcgaacttttatttatttttcctttgcagACATTGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTTTGTGAACACGCAGCCTGGCTATcGAGTGCTACTGCAAGCAGGGCTTCTATTACGATGGTAATCTTTTAGAGTGTGTAGgtgagctagactatagtgctacccaaggaacagctgaacatatgtttcct Alignment from Spaln_nt2Genome ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTA-CGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG acatctgagtaataggccactgcgaacttttatttatttttcctttgcagACATTGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTTTGTGAACACGCAGCCTGGCTATCGAGTGCTACTGCAAGCAGGGCTTCTATTACGATGGTAATCTTTTAGAGTGTGTAGgtgagctagactatagtgctacccaaggaacagctgaacatatgtttcct Alignment from Pairagon ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTA-CGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG acatctgagtaataggccactgcgaacttttatttatttttcctttgcagACATTGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTTTGTGAACACGCAGCCTGGCTATCGAGTGCTACTGCAAGCAGGGCTTCTATTACGATGGTAATCTTTTAGAGTGTGTAGgtgagctagactatagtgctacccaaggaacagctgaacatatgtttcct Alignment from Exonerate_protein2genome ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTAC-GAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG acatctgagtaataggccactgcgaacttttatttatttttcctttgcagACATTGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTTTGTGAACACGCAGCCTGGCTATCGAGTGCTACTGCAAGCAGGGCTTCTATTACGATGGTAATCTTTTAGAGTGTGTAGgtgagctagactatagtgctacccaaggaacagctgaacatatgtttcct Alignment from Exonerate_coding2genome ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTAC-GAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG acatctgagtaataggccactgcgaacttttatttatttttcctttgcagACATTGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTTTGTGAACACGCAGCCTGGCTATCGAGTGCTACTGCAAGCAGGGCTTCTATTACGATGGTAATCTTTTAGAGTGTGTAGgtgagctagactatagtgctacccaaggaacagctgaacatatgtttcct Alignment from GeneWise ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACGCAGCCCGGCTAC-GAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG acatctgagtaataggccactgcgaacttttatttatttttcctttgcagACATTGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTTTGTGAACACGCAGCCTGGCTATCGAGTGCTACTGCAAGCAGGGCTTCTATTACGATGGTAATCTTTTAGAGTGTGTAGgtgagctagactatagtgctacccaaggaacagctgaacatatgtttcct #### Macrod1_ID2051_6 --> 2 - 0 Original Alignment atGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGC-AGCTGCTACTTGAGCAGC---CTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG aaaagtgaatgattgaaggatattgaaatctgtcacgtctgtctgcctagatGTCATC------GTGGGGCTCATTGCAGTGGGA------------AGTGAGGCAGCTGAATTCCACCAGCTGTTATTTGAGCAGTCCTTTGGATCTGCTGCTAGAGCACAGATTGTGTCCAGTTgtacccttcaagtggttgaagcaagagcaaaagaaggcattcaaaagcta Alignment from CESAR atGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGC-AGCTGCTACTTGAGCAGC---CTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG aaaagtgaatgattgaaggatattgaaatctgtcacgtctgtctgcctagatGTCATC------GTGGGGCTCATTGCAGTGGGA------------AGTGAGGCAGCTGAATTCCACCAGCTGTTATTTGAGCAGTCCTTTGGATCTGCTGCTAGAGCACAGATTGTGTCCAGTTgtacccttcaagtggttgaagcaagagcaaaagaaggcattcaaaagcta Alignment from Spaln_aa2Genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGC-AGCTGCTACTTGAGCAGC---CTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG aaaagtgaatgattgaaggatattgaaatctgtcacgtctgtctgcctagATGTCATC------GTGGGGCTCATTGCAGTGGGA------------AGTGAGGCAGCTGAATTCCACcAGCTGTTATTTGAGCAGTCCTTTGGATCTGCTGCTAGAGCACAGATTGTGTCCAGTTgtacccttcaagtggttgaagcaagagcaaaagaaggcattcaaaagcta Alignment from Spaln_nt2Genome ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGC-AGCTGCTACTTGAGCAGCC---TGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG aaaagtgaatgattgaaggatattgaaatctgtcacgtctgtctgcctagATGTCATC------GTGGGGCTCATTGCAGTGGG------------AAGTGAGGCAGCTGAATTCCACCAGCTGTTATTTGAGCAGTCCTTTGGATCTGCTGCTAGAGCACAGATTGTGTCCAGTTgtacccttcaagtggttgaagcaagagcaaaagaaggcattcaaaagcta Alignment from Pairagon ATGTCATCCACACGGTGGGGCCCATCGCCGTGGG------------------CCAACCCACTGCCAGCCAGGCGGCCGAGCTCCGCAGCTGCTACTTGAGCAGCC---TGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTG aaaagtgaatgattgaaggatattgaaatctgtcacgtctgtctgcctagATGTCATC------GTGGGGCTCATTGCAGTGGGAAGTGAGGCAGCTGAATTCCAC-----------------------------CAGCTGTTATTTGAGCAGTCCTTTGGATCTGCTGCTAGAGCACAGATTGTGTCCAGTTgtacccttcaagtggttgaagcaagagcaaaagaaggcattcaaaagcta Alignment from Exonerate_protein2genome aaaagtgaatgattgaaggatattgaaatctgtcacgtctgtctgcctagatgtcatcgtggggctcattgcagtgggaagtgaggcagctgaattccaccagctgttatttgagcagtcctttggatctgctgctagagcacagattgtgtccagttgtacccttcaagtggttgaagcaagagcaaaagaaggcattcaaaagcta Alignment from Exonerate_coding2genome aaaagtgaatgattgaaggatattgaaatctgtcacgtctgtctgcctagatgtcatcgtggggctcattgcagtgggaagtgaggcagctgaattccaccagctgttatttgagcagtcctttggatctgctgctagagcacagattgtgtccagttgtacccttcaagtggttgaagcaagagcaaaagaaggcattcaaaagcta Alignment from GeneWise ATGTCATCCACACGGTGGGGCCCATCGCCGTGGGCCAACCCACTGCCAGCCAGGCGGCCGAGCTC-CGCAGCTGCTACTTGAGCAGC---CTGGACCTGCTGCTGGAGCACCGGCTGCGCTCAGTGGCTTTCCCG aaaagtgaatgattgaaggatattgaaatctgtcacgtctgtctgcctagATGTCATC------GTGGGGCTCATTGCAGTGGGA------------AGTGAGGCAGCTGAATTCCACCAGCTGTTATTTGAGCAGTCCTTTGGATCTGCTGCTAGAGCACAGATTG------------TGTCCAgttgtacccttcaagtggttgaagcaagagcaaaagaaggcattcaaaagcta #### Macrod1_ID2053_8 --> 2 - 0 Original Alignment gcTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTG-GCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgcattcacaggatgcctccgcgtacattacaggcTACCCTAATGAGGAGGCTGCAGAGGTAGTGCTGCGTTTCACTGCGGGAATGGCTGGAGCAACACAAGGACAAGgtgagcccagacagatattacatgatgggagcttggctgctataaactaa Alignment from CESAR gcTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTG-GCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgcattcacaggatgcctccgcgtacattacaggcTACCCTAATGAGGAGGCTGCAGAGGTAGTGCTGCGTTTCACTGCGGGAATGGCTGGAGCAACACAAGGACAAGgtgagcccagacagatattacatgatgggagcttggctgctataaactaa Alignment from Spaln_aa2Genome GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTG-GCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgcattcacaggatgcctccgcgtacattacagGCTACCCTAATGAGGAGGCTGCAGAGGTAGTGCTGcGTTTCACTGCGGGAATGGCTGGAGCAACACAAGGACAAGgtgagcccagacagatattacatgatgggagcttggctgctataaactaa Alignment from Spaln_nt2Genome GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTG-GCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgcattcacaggatgcctccgcgtacattacagGCTACCCTAATGAGGAGGCTGCAGAGGTAGTGCTGCGTTTCACTGCGGGAATGGCTGGAGCAACACAAGGACAAGgtgagcccagacagatattacatgatgggagcttggctgctataaactaa Alignment from Pairagon GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTG-GCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgcattcacaggatgcctccgcgtacattacagGCTACCCTAATGAGGAGGCTGCAGAGGTAGTGCTGCGTTTCACTGCGGGAATGGCTGGAGCAACACAAGGACAAGgtgagcccagacagatattacatgatgggagcttggctgctataaactaa Alignment from Exonerate_protein2genome GCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTG-GCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgcattcacaggatgcctccgcgtacattacagGCTACCCTAATGAGGAGGCTGCAGAGGTAGTGCTGCGTTTCACTGCGGGAATGGCTGGAGCAACACAAGGACAAGgtgagcccagacagatattacatgatgggagcttggctgctataaactaa Alignment from Exonerate_coding2genome tggggtggggtccaatatgcattcacaggatgcctccgcgtacattacaggctaccctaatgaggaggctgcagaggtagtgctgcgtttcactgcgggaatggctggagcaacacaaggacaaggtgagcccagacagatattacatgatgggagcttggctgctataaactaa Alignment from GeneWise TGCATCTCCACAGGCGTGTTTGGCTACCCCAATGAGGAGGCTGCAGAAGTAGTGCTG-GCTTCGCTGCGGGAATGGCTGGAGCAGCACAAGGACAAG tggggtggggtccaatatgcattcacagGATGCCTCCGCGTACATTACAGGCTACCCTAATGAGGAGGCTGCAGAGGTAGTGCTGCGTTTCACTGCGGGAATGGCTGGAGCAACACAAGGACAAGgtgagcccagacagatattacatgatgggagcttggctgctataaactaa #### Macrod1_ID2054_9 --> 0 - 1 Original Alignment GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGC-ATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAg gtaggccagttacattccagcttaagttcctgtctcctccccacccacagGTGGATCGGCTCATCATCTGTGTGTTCTTGGAGAAAGATGAGGGCCATTTACAGGGAACGTCTTCCCCATTATTTCCCAGTAggtgagcacccattgctcatatgctcctggacatccaaccctcagcaatgt Alignment from CESAR GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGC-ATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAg gtaggccagttacattccagcttaagttcctgtctcctccccacccacagGTGGATCGGCTCATCATCTGTGTGTTCTTGGAGAAAGATGAGGGCCATTTACAGGGAACGTCTTCCCCATTATTTCCCAGTAggtgagcacccattgctcatatgctcctggacatccgactctgtcccttct Alignment from Spaln_aa2Genome GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGC-ATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAG gtaggccagttacattccagcttaagttcctgtctcctccccacccacagGTGGATCGGCTCATCATCTGTGTGTTCTTGGAGAAAGATGAGGGCcATTTACAGGGAACGTCTTCCCCATTATTTCCCAGTAGgtgagcacccattgctcatatgctcctggacatccaaccctcagcaatgt Alignment from Spaln_nt2Genome GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGC-ATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAGCC gtaggccagttacattccagcttaagttcctgtctcctccccacccacagGTGGATCGGCTCATCATCTGTGTGTTCTTGGAGAAAGATGAGGGCCATTTACAGGGAACGTCTTCCCCATTATTTCCCAGTAGGTgagcacccattgctcatatgctcctggacatccaaccctcagcaatgt Alignment from Pairagon GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGG-CATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAGCC gtaggccagttacattccagcttaagttcctgtctcctccccacccacagGTGGATCGGCTCATCATCTGTGTGTTCTTGGAGAAAGATGAGGGCCATTTACAGGGAACGTCTTCCCCATTATTTCCCAGTAGGTgagcacccattgctcatatgctcctggacatccaaccctcagcaatgt Alignment from Exonerate_protein2genome GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGC-ATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTA gtaggccagttacattccagcttaagttcctgtctcctccccacccacagGTGGATCGGCTCATCATCTGTGTGTTCTTGGAGAAAGATGAGGGCCATTTACAGGGAACGTCTTCCCCATTATTTCCCAGTAggtgagcacccattgctcatatgctcctggacatccaaccctcagcaatgt Alignment from Exonerate_coding2genome gtaggccagttacattccagcttaagttcctgtctcctccccacccacaggtggatcggctcatcatctgtgtgttcttggagaaagatgagggccatttacagggaacgtcttccccattatttcccagtaggtgagcacccattgctcatatgctcctggacatccaaccctcagcaatgt Alignment from GeneWise GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAGGGC-ATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAGCC gtaggccagttacattccagcttaagttcctgtctcctccccacccacagGTGGATCGGCTCATCATCTGTGTGTTCTTGGAGAAAGATGAGGGCCATTTACAGGGAACGTCTTCCCCATTATTTCCCAGTAGGTgagcacccattgctcatatgctcctggacatccaaccctcagcaatgt #### Map3k11_ID1202_3 --> 1 - 1 Original Alignment cTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAG-GTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTg cctcctgagttgtattcacatccacatcttcattcactcctcttggacagtTTTGGAGTGTTACTGTGGGAGCTGCTGACTGGGAAACGTGCCATACCGAGGCATTGACTGTCTTGCTGTAGTCTATGGTGTGGCTGTAAATAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTggtaatggagatgaggttgtggagatgaaaagcaggcccctggtgagaatg Alignment from CESAR cTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAG-GTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTg cctcctgagttgtattcacatccacatcttcattcactcctcttggacagtTTTGGAGTGTTACTGTGGGAGCTGCTGACTGGGAAACGTGCCATACCGAGGCATTGACTGTCTTGCTGTAGTCTATGGTGTGGCTGTAAATAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTggtaatggagatgaggttgtggagatgaaaagcaggcccctggtgagaatg Alignment from Spaln_aa2Genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAG-GTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG cctcctgagttgtattcacatccacatcttcattcactcctcttggacagTTTTGGAGTGTTACTGTGGGAGCTGCTGACTGGGAAAcGTGCCATACCGAGGCATTGACTGTCTTGCTGTAGTCTATGGTGTGGCTGTAAATAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtaatggagatgaggttgtggagatgaaaagcaggcccctggtgagaatg Alignment from Spaln_nt2Genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAG-GTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG cctcctgagttgtattcacatccacatcttcattcactcctcttggacagTTTTGGAGTGTTACTGTGGGAGCTGCTGACTGGGAAACGTGCCATACCGAGGCATTGACTGTCTTGCTGTAGTCTATGGTGTGGCTGTAAATAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtaatggagatgaggttgtggagatgaaaagcaggcccctggtgagaatg Alignment from Pairagon CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAG-GTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG cctcctgagttgtattcacatccacatcttcattcactcctcttggacagTTTTGGAGTGTTACTGTGGGAGCTGCTGACTGGGAAACGTGCCATACCGAGGCATTGACTGTCTTGCTGTAGTCTATGGTGTGGCTGTAAATAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtaatggagatgaggttgtggagatgaaaagcaggcccctggtgagaatg Alignment from Exonerate_protein2genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAG-GTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG cctcctgagttgtattcacatccacatcttcattcactcctcttggacagTTTTGGAGTGTTACTGTGGGAGCTGCTGACTGGGAAACGTGCCATACCGAGGCATTGACTGTCTTGCTGTAGTCTATGGTGTGGCTGTAAATAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtaatggagatgaggttgtggagatgaaaagcaggcccctggtgagaatg Alignment from Exonerate_coding2genome CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGGGAG-GTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG cctcctgagttgtattcacatccacatcttcattcactcctcttggacagTTTTGGAGTGTTACTGTGGGAGCTGCTGACTGGGAAACGTGCCATACCGAGGCATTGACTGTCTTGCTGTAGTCTATGGTGTGGCTGTAAATAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtaatggagatgaggttgtggagatgaaaagcaggcccctggtgagaatg Alignment from GeneWise CTTTGGAGTGCTGCTGTGGGAACTGCTGACTGGG-GAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG cctcctgagttgtattcacatccacatcttcattcactcctcttggacagTTTTGGAGTGTTACTGTGGGAGCTGCTGACTGGGAAACGTGCCATACCGAGGCATTGACTGTCTTGCTGTAGTCTATGGTGTGGCTGTAAATAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtaatggagatgaggttgtggagatgaaaagcaggcccctggtgagaatg #### Map3k11_ID1203_4 --> 2 - 0 Original Alignment acTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTC-CATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG agcaggcccctggtgagaatgtccagagatctacctgtgtctccccacagatTGCTGGGCACAGGATCCACACCGCAGGCCCCACTTTGCTTCCATATTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCCCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGTTTGTTTGATGAGCTACGGGCCAAGGAAAAGgtaagattcctatgggacatagggaggaataggggatggggtgggggtct Alignment from CESAR acTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTC-CATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG agcaggcccctggtgagaatgtccagagatctacctgtgtctccccacagatTGCTGGGCACAGGATCCACACCGCAGGCCCCACTTTGCTTCCATATTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCCCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGTTTGTTTGATGAGCTACGGGCCAAGGAAAAGgtaagattcctatgggacatagggaggaataggggatggggtgggggtct Alignment from Spaln_aa2Genome ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTC-CATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG agcaggcccctggtgagaatgtccagagatctacctgtgtctccccacagATTGCTGGGCACAGGATCCACACCGCAGGCCCCACTTTGCTTCCATATTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCcCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGTTTGTTTGATGAGCTACGGGCCAAGGAAAAGgtaagattcctatgggacatagggaggaataggggatggggtgggggtct Alignment from Spaln_nt2Genome ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTT-CCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG agcaggcccctggtgagaatgtccagagatctacctgtgtctccccacagATTGCTGGGCACAGGATCCACACCGCAGGCCCCACTTTGCTTCCATATTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCCCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGTTTGTTTGATGAGCTACGGGCCAAGGAAAAGgtaagattcctatgggacatagggaggaataggggatggggtgggggtct Alignment from Pairagon ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTT-CCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG agcaggcccctggtgagaatgtccagagatctacctgtgtctccccacagATTGCTGGGCACAGGATCCACACCGCAGGCCCCACTTTGCTTCCATATTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCCCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGTTTGTTTGATGAGCTACGGGCCAAGGAAAAGgtaagattcctatgggacatagggaggaataggggatggggtgggggtct Alignment from Exonerate_protein2genome ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTC-CATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG agcaggcccctggtgagaatgtccagagatctacctgtgtctccccacagATTGCTGGGCACAGGATCCACACCGCAGGCCCCACTTTGCTTCCATATTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCCCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGTTTGTTTGATGAGCTACGGGCCAAGGAAAAGgtaagattcctatgggacatagggaggaataggggatggggtgggggtct Alignment from Exonerate_coding2genome ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTC-CATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG agcaggcccctggtgagaatgtccagagatctacctgtgtctccccacagATTGCTGGGCACAGGATCCACACCGCAGGCCCCACTTTGCTTCCATATTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCCCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGTTTGTTTGATGAGCTACGGGCCAAGGAAAAGgtaagattcctatgggacatagggaggaataggggatggggtgggggtct Alignment from GeneWise ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCC-TTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTGTTTGATGAGCTGCGGGCCAAGGAAAAG agcaggcccctggtgagaatgtccagagatctacctgtgtctccccacagATTGCTGGGCACAGGATCCACACCGCAGGCCCCACTTTGCTTCCATATTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTCCTTCCCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGTTTGTTTGATGAGCTACGGGCCAAGGAAAAGgtaagattcctatgggacatagggaggaataggggatggggtgggggtct #### Map3k11_ID1204_5 --> 0 - 1 Original Alignment GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGA------CGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAG-CAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGg ctatgttagttaacagataagttagcttgatgattccgatctatctccagGAACTACTTAGTCGAGAGGAAGAATTGACATGGGCTGCATGTGTGCAATGGTCTCAGGCAGAGCAGCTGCGGCTGCGACGGCGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACAACTGCCTGCACTGACATTGCTACTGCAGCCAGGTGGATCGAGAACAGCCACATGTACACCGACGCCGGGGCACCTCCAAGTTGAGCAAACTTCGAGCAAGAGATAGTGAAGAACGGATCAGCATGCCCTTGggtgagggctggggcttcaattctgcctgcaatttgctagtggtggtgctg Alignment from CESAR GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAG------CTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAG-CAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGg ctatgttagttaacagataagttagcttgatgattccgatctatctccagGAACTACTTAGTCGAGAGGAAGAATTGACATGGGCTGCATGTGTGCAATGGTCTCAGGCAGAGCAGCTGCGGCTGCGACGGCGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACAACTGCCTGCACTGACATTGCTACTGCAGCCAGGTGGATCGAGAACAGCCACATGTACACCGACGCCGGGGCACCTCCAAGTTGAGCAAACTTCGAGCAAGAGATAGTGAAGAACGGATCAGCATGCCCTTGggtgagggctggggcttcaattctgcctgcaatttgctagtggtggtgctg Alignment from Spaln_aa2Genome GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAG------CTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAG-CAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctatgttagttaacagataagttagcttgatgattccgatctatctccagGAACTACTTAGTCGAGAGGAAGAATTGACATGGGCTGCATGTGTGCAATGGTCTCAGGCAGAGCAGCTGCGGCTGCGACGGCGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACAACTGCCTGCACTGACATTGCTACTGCAGcCAGGTGGATCGAGAACAGCCACATGTACACCGACGCCGGGGCACCTCCAAGTTGAGCAAACTTCGAGCAAGAGATAGTGAAGAACGGATCAGCATGCCCTTGGgtgagggctggggcttcaattctgcctgcaatttgctagtggtggtgctg Alignment from Spaln_nt2Genome GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCG------ACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGA------GCGCGAGCTGACGCTGCTACTGCAGC-AGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctatgttagttaacagataagttagcttgatgattccgatctatctccagGAACTACTTAGTCGAGAGGAAGAATTGACATGGGCTGCATGTGTGCAATGGTCTCAGGCAGAGCAGCTGCGGCTGCGACGGCGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACAACTGCCTGCACTGACATTGCTACTGCAGCCAGGTGGATCGAGAACAGCCACATGTACACCGACGCCGGGGCACCTCCAAGTTGAGCAAACTTCGAGCAAGAGATAGTGAAGAACGGATCAGCATGCCCTTGGgtgagggctggggcttcaattctgcctgcaatttgctagtggtggtgctg Alignment from Pairagon GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCA------GCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGA------GCGCGAGCTGACGCTGCTACTGCAG-CAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctatgttagttaacagataagttagcttgatgattccgatctatctccagGAACTACTTAGTCGAGAGGAAGAATTGACATGGGCTGCATGTGTGCAATGGTCTCAGGCAGAGCAGCTGCGGCTGCGACGGCGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACAACTGCCTGCACTGACATTGCTACTGCAGCCAGGTGGATCGAGAACAGCCACATGTACACCGACGCCGGGGCACCTCCAAGTTGAGCAAACTTCGAGCAAGAGATAGTGAAGAACGGATCAGCATGCCCTTGGgtgagggctggggcttcaattctgcctgcaatttgctagtggtggtgctg Alignment from Exonerate_protein2genome GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAG------CTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAG-CAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctatgttagttaacagataagttagcttgatgattccgatctatctccagGAACTACTTAGTCGAGAGGAAGAATTGACATGGGCTGCATGTGTGCAATGGTCTCAGGCAGAGCAGCTGCGGCTGCGACGGCGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACAACTGCCTGCACTGACATTGCTACTGCAGCCAGGTGGATCGAGAACAGCCACATGTACACCGACGCCGGGGCACCTCCAAGTTGAGCAAACTTCGAGCAAGAGATAGTGAAGAACGGATCAGCATGCCCTTGGgtgagggctggggcttcaattctgcctgcaatttgctagtggtggtgctg Alignment from Exonerate_coding2genome GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAG------CTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAG-CAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctatgttagttaacagataagttagcttgatgattccgatctatctccagGAACTACTTAGTCGAGAGGAAGAATTGACATGGGCTGCATGTGTGCAATGGTCTCAGGCAGAGCAGCTGCGGCTGCGACGGCGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACAACTGCCTGCACTGACATTGCTACTGCAGCCAGGTGGATCGAGAACAGCCACATGTACACCGACGCCGGGGCACCTCCAAGTTGAGCAAACTTCGAGCAAGAGATAGTGAAGAACGGATCAGCATGCCCTTGGgtgagggctggggcttcaattctgcctgcaatttgctagtggtggtgctg Alignment from GeneWise GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAG------CTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAG-CAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG ctatgttagttaacagataagttagcttgatgattccgatctatctccagGAACTACTTAGTCGAGAGGAAGAATTGACATGGGCTGCATGTGTGCAATGGTCTCAGGCAGAGCAGCTGCGGCTGCGACGGCGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACAACTGCCTGCACTGACATTGCTACTGCAGCCAGGTGGATCGAGAACAGCCACATGTACACCGACGCCGGGGCACCTCCAAGTTGAGCAAACTTCGAGCAAGAGATAGTGAAGAACGGATCAGCATGCCCTTGGgtgagggctggggcttcaattctgcctgcaatttgctagtggtggtgctg #### Map3k11_ID1206_7 --> 2 - 2 Original Alignment tgGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAG-TCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGag atcccagattgctgtaaattaggtctccgaatatattctttcctttccagtgGAACCCACAGAATCGGGACAGACATGGAGTCGCCAGCTCTCCTGGACGTCTTGAAGATTCTAGTAATGGAGAGAGGCGTGCCTGCTGGGCCTGGGGTCCTGCCTCCCCCAAGCCTGGGGAGGCCCAAAATGGGaggtatacacttcagaacacttatatcctggtgttctgctttttgggggcct Alignment from CESAR tgGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAG-TCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGag atcccagattgctgtaaattaggtctccgaatatattctttcctttccagtgGAACCCACAGAATCGGGACAGACATGGAGTCGCCAGCTCTCCTGGACGTCTTGAAGATTCTAGTAATGGAGAGAGGCGTGCCTGCTGGGCCTGGGGTCCTGCCTCCCCCAAGCCTGGGGAGGCCCAAAATGGGaggtatacacttcagaacacttatatcctggtgttctgctttttgggggcct Alignment from Spaln_aa2Genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAG-TCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG atcccagattgctgtaaattaggtctccgaatatattctttcctttccagTGGAACCCACAGAATCGGGACAGACATGGAGTCGCCAGcTCTCCTGGACGTCTTGAAGATTCTAGTAATGGAGAGAGGCGTGCCTGCTGGGCCTGGGGTCCTGCCTCCCCCAAGCCTGGGGAGGCCCAAAATGGGAGgtatacacttcagaacacttatatcctggtgttctgctttttgggggcct Alignment from Spaln_nt2Genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAG-TCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG atcccagattgctgtaaattaggtctccgaatatattctttcctttccagTGGAACCCACAGAATCGGGACAGACATGGAGTCGCCAGCTCTCCTGGACGTCTTGAAGATTCTAGTAATGGAGAGAGGCGTGCCTGCTGGGCCTGGGGTCCTGCCTCCCCCAAGCCTGGGGAGGCCCAAAATGGGAGgtatacacttcagaacacttatatcctggtgttctgctttttgggggcct Alignment from Pairagon TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAG-TCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG atcccagattgctgtaaattaggtctccgaatatattctttcctttccagTGGAACCCACAGAATCGGGACAGACATGGAGTCGCCAGCTCTCCTGGACGTCTTGAAGATTCTAGTAATGGAGAGAGGCGTGCCTGCTGGGCCTGGGGTCCTGCCTCCCCCAAGCCTGGGGAGGCCCAAAATGGGAGgtatacacttcagaacacttatatcctggtgttctgctttttgggggcct Alignment from Exonerate_protein2genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAG-TCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG atcccagattgctgtaaattaggtctccgaatatattctttcctttccagTGGAACCCACAGAATCGGGACAGACATGGAGTCGCCAGCTCTCCTGGACGTCTTGAAGATTCTAGTAATGGAGAGAGGCGTGCCTGCTGGGCCTGGGGTCCTGCCTCCCCCAAGCCTGGGGAGGCCCAAAATGGGAGgtatacacttcagaacacttatatcctggtgttctgctttttgggggcct Alignment from Exonerate_coding2genome TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAG-TCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG atcccagattgctgtaaattaggtctccgaatatattctttcctttccagTGGAACCCACAGAATCGGGACAGACATGGAGTCGCCAGCTCTCCTGGACGTCTTGAAGATTCTAGTAATGGAGAGAGGCGTGCCTGCTGGGCCTGGGGTCCTGCCTCCCCCAAGCCTGGGGAGGCCCAAAATGGGAGgtatacacttcagaacacttatatcctggtgttctgctttttgggggcct Alignment from GeneWise TGGAACCTACAGAATCAGGCCAGACTTGGGGTCGCCAG-TCCCCCAGACGTCTTGAAGATTCAAGCAATGGAGAGAGGCGTGCTTGCTGGGCCTGGGGTCCCAGCTCCCCCAAGCCTGGGGAGGCCCAGAACGGGAG atcccagattgctgtaaattaggtctccgaatatattctttcctttccagTGGAACCCACAGAATCGGGACAGACATGGAGTCGCCAGCTCTCCTGGACGTCTTGAAGATTCTAGTAATGGAGAGAGGCGTGCCTGCTGGGCCTGGGGTCCTGCCTCCCCCAAGCCTGGGGAGGCCCAAAATGGGAGgtatacacttcagaacacttatatcctggtgttctgctttttgggggcct #### Map4k2_ID1622_2 --> 0 - 1 Original Alignment GCCCGTGACACCGTCACGTCCGAACTGGCCGCGGTGAAG-ATCGTCAAGCTAGACCCAg agggatcccagtgctgccccctatctatatgcttcctttcttcttttcagGCTCGTGACACCGTCACATCTGAACTGGCTGCAGTGAAGCATTGTCAAGCTAGACCCAggtgagtggatgggcatagagtcctccatacagctagaagggattgacagg Alignment from CESAR GCCCGTGACACCGTCACGTCCGAACTGGCCGCGGTGAAG-ATCGTCAAGCTAGACCCAg agggatcccagtgctgccccctatctatatgcttcctttcttcttttcagGCTCGTGACACCGTCACATCTGAACTGGCTGCAGTGAAGCATTGTCAAGCTAGACCCAggtgagtggatgggcatagagtcctccatacagctagaagggattgacagg Alignment from Spaln_aa2Genome GCCCGTGACACCGTCACGTCCGAACTGGCCGCGGTGAAG-ATCGTCAAGCTAGACCCAG agggatcccagtgctgccccctatctatatgcttcctttcttcttttcagGCTCGTGACACCGTCACATCTGAACTGGCTGCAGTGAAGcATTGTCAAGCTAGACCCAGgtgagtggatgggcatagagtcctccatacagctagaagggattgacagg Alignment from Spaln_nt2Genome GCCCGTGACACCGTCACGTCCGAACTGGCCGCGGTGAAG-ATCGTCAAGCTAGACCCAG agggatcccagtgctgccccctatctatatgcttcctttcttcttttcagGCTCGTGACACCGTCACATCTGAACTGGCTGCAGTGAAGCATTGTCAAGCTAGACCCAGgtgagtggatgggcatagagtcctccatacagctagaagggattgacagg Alignment from Pairagon GCCCGTGACACCGTCACGTCCGAACTGGCCGCGGTGAAG-ATCGTCAAGCTAGACCCAG agggatcccagtgctgccccctatctatatgcttcctttcttcttttcagGCTCGTGACACCGTCACATCTGAACTGGCTGCAGTGAAGCATTGTCAAGCTAGACCCAGgtgagtggatgggcatagagtcctccatacagctagaagggattgacagg Alignment from Exonerate_protein2genome GCCCGTGACACCGTCACGTCCGAACTGGCCGCGGTGAAG-ATCGTCAAGCTAGACCCAG agggatcccagtgctgccccctatctatatgcttcctttcttcttttcagGCTCGTGACACCGTCACATCTGAACTGGCTGCAGTGAAGCATTGTCAAGCTAGACCCAGgtgagtggatgggcatagagtcctccatacagctagaagggattgacagg Alignment from Exonerate_coding2genome GCCCGTGACACCGTCACGTCCGAACTGGCCGCGGTGAAG-ATCGTCAAGCTAGACCCAG agggatcccagtgctgccccctatctatatgcttcctttcttcttttcagGCTCGTGACACCGTCACATCTGAACTGGCTGCAGTGAAGCATTGTCAAGCTAGACCCAGgtgagtggatgggcatagagtcctccatacagctagaagggattgacagg Alignment from GeneWise agggatcccagtgctgccccctatctatatgcttcctttcttcttttcaggctcgtgacaccgtcacatctgaactggctgcagtgaagcattgtcaagctagacccaggtgagtggatgggcatagagtcctccatacagctagaagggattgacagg #### Map4k2_ID1623_3 --> 2 - 2 Original Alignment ggGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTAC-ATCGGCAGCTACCTCag ataccatttaggcactgaacaatgcatccacagactgactgactctccagggGATGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCTACCATCAGCAGCTACCTCaggtatgtctgttcacacccccaccctcaggtgtccattgtgctaaacactc Alignment from CESAR ggGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTAC-ATCGGCAGCTACCTCag ataccatttaggcactgaacaatgcatccacagactgactgactctccagggGATGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCTACCATCAGCAGCTACCTCaggtatgtctgttcacacccccaccctcaggtgtccattgtgctagccaccc Alignment from Spaln_aa2Genome GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTAC-ATCGGCAGCTACCTCAG ataccatttaggcactgaacaatgcatccacagactgactgactctccagGGGATGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCTACcATCAGCAGCTACCTCAGgtatgtctgttcacacccccaccctcaggtgtccattgtgctaaacactc Alignment from Spaln_nt2Genome GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTAC-ATCGGCAGCTACCTCAG ataccatttaggcactgaacaatgcatccacagactgactgactctccagGGGATGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCTACCATCAGCAGCTACCTCAGgtatgtctgttcacacccccaccctcaggtgtccattgtgctaaacactc Alignment from Pairagon GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTA-CATCGGCAGCTACCTCAG ataccatttaggcactgaacaatgcatccacagactgactgactctccagGGGATGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCTACCATCAGCAGCTACCTCAGgtatgtctgttcacacccccaccctcaggtgtccattgtgctaaacactc Alignment from Exonerate_protein2genome GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTAC-ATCGGCAGCTACCTCAG ataccatttaggcactgaacaatgcatccacagactgactgactctccagGGGATGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCTACCATCAGCAGCTACCTCAGgtatgtctgttcacacccccaccctcaggtgtccattgtgctaaacactc Alignment from Exonerate_coding2genome GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTAC-ATCGGCAGCTACCTCAG ataccatttaggcactgaacaatgcatccacagactgactgactctccagGGGATGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCTACCATCAGCAGCTACCTCAGgtatgtctgttcacacccccaccctcaggtgtccattgtgctaaacactc Alignment from GeneWise GGGACGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTCGTGGCCTACATCGGC-------------------------------------------------------------- ataccatttaggcactgaacaatgcatccacagactgactgactctccagGGGATGACATCAGCTCTCTTCAGCAGGAAATCACCATCCTTCGTGAATGCCGCCACCCCAATGTTGTGGCCTACCATCAGCAGCTACCTCAGGTATGTCTGTTCACACCCCCACCCTCAGGTGTCCATTGTGCTAAACACTC #### Map4k2_ID1624_4 --> 1 - 1 Original Alignment gAATGACCGATTGTGGATCTGT-ATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACg cccccaccctcaggtgtccattgtgctagccaccccctgggctgcggcaggAATGACCGATTGTGGATCTGTCATGGAGTTCTGTGGGGGAGCGTCACTACAGGAAGTTTACCATggtaaagaccaaactccatggacctgtcattctgtgatcacgataacaagg Alignment from CESAR gAATGACCGATTGTGGATCTGT-ATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACg cccccaccctcaggtgtccattgtgctagccaccccctgggctgcggcaggAATGACCGATTGTGGATCTGTCATGGAGTTCTGTGGGGGAGCGTCACTACAGGAAGTTTACCATggtaaagaccaaactccatggacctgtcattctgtgatcacgataacaagg Alignment from Spaln_aa2Genome GAATGACCGATTGTGGATCTGT-ATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACG cccccaccctcaggtgtccattgtgctagccaccccctgggctgcggcagGAATGACCGATTGTGGATCTGTcATGGAGTTCTGTGGGGGAGCGTCACTACAGGAAGTTTACCATGgtaaagaccaaactccatggacctgtcattctgtgatcacgataacaagg Alignment from Spaln_nt2Genome GAATGACCGATTGTGGATCTGT-ATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACG cccccaccctcaggtgtccattgtgctagccaccccctgggctgcggcagGAATGACCGATTGTGGATCTGTCATGGAGTTCTGTGGGGGAGCGTCACTACAGGAAGTTTACCATGgtaaagaccaaactccatggacctgtcattctgtgatcacgataacaagg Alignment from Pairagon GAATGACCGATTGTGGATCTGT-ATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACG cccccaccctcaggtgtccattgtgctagccaccccctgggctgcggcagGAATGACCGATTGTGGATCTGTCATGGAGTTCTGTGGGGGAGCGTCACTACAGGAAGTTTACCATGgtaaagaccaaactccatggacctgtcattctgtgatcacgataacaagg Alignment from Exonerate_protein2genome GAATGACCGATTGTGGATCTGT-ATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACG cccccaccctcaggtgtccattgtgctagccaccccctgggctgcggcagGAATGACCGATTGTGGATCTGTCATGGAGTTCTGTGGGGGAGCGTCACTACAGGAAGTTTACCATGgtaaagaccaaactccatggacctgtcattctgtgatcacgataacaagg Alignment from Exonerate_coding2genome GAATGACCGATTGTGGATCTGT-ATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACG cccccaccctcaggtgtccattgtgctagccaccccctgggctgcggcagGAATGACCGATTGTGGATCTGTCATGGAGTTCTGTGGGGGAGCGTCACTACAGGAAGTTTACCATGgtaaagaccaaactccatggacctgtcattctgtgatcacgataacaagg Alignment from GeneWise GAATGACCGATTGTGGATCTGT-ATGGAGTTCTGTGGAGGAGGGTCACTGCAGGAGATTTACCACG cccccaccctcaggtgtccattgtgctagccaccccctgggctgcggcagGAATGACCGATTGTGGATCTGTCATGGAGTTCTGTGGGGGAGCGTCACTACAGGAAGTTTACCATGgtaaagaccaaactccatggacctgtcattctgtgatcacgataacaagg #### Map4k2_ID1628_7 --> 0 - 1 Original Alignment GGTGCCAACCTTCTGCTCACTCTG-CAGGGTGATGTCAAGCTGg gaagcctagaggtgtacccagcatatatctcctttcttgtttcctcatagGGTGCGAACCTTCTGCTCACTCTGCCAGGGTGATGTGCAGTTGggtaagaagctgggggactttctgggaccacacaactgcatgctggggctc Alignment from CESAR GGTGCCAACCTTCTGCTCACTCTG-CAGGGTGATGTCAAGCTGg gaagcctagaggtgtacccagcatatatctcctttcttgtttcctcatagGGTGCGAACCTTCTGCTCACTCTGCCAGGGTGATGTGCAGTTGggtaagaagctgggggactttctgggaccacacaactgcatgctggggctc Alignment from Spaln_aa2Genome GGTGCCAACCTTCTGCTCACTCTGCAGGG gaagcctagaggtgtacccagcatatatctcctttcttgtttcctcatagGGTGCGAACCTTCTGCTCACTCTGCCAGGgtgatgtgcagttgggtaagaagctgggggactttctgggaccacacaactgcatgctggggctc Alignment from Spaln_nt2Genome GGTGCCAACCTTCTGCTCACTCTGC-AGGGTGATGTCAAGCTGG gaagcctagaggtgtacccagcatatatctcctttcttgtttcctcatagGGTGCGAACCTTCTGCTCACTCTGCCAGGGTGATGTGCAGTTGGgtaagaagctgggggactttctgggaccacacaactgcatgctggggctc Alignment from Pairagon GGTGCCAACCTTCTGCTCACTCTG-CAGGGTGATGTCAAGCTGG gaagcctagaggtgtacccagcatatatctcctttcttgtttcctcatagGGTGCGAACCTTCTGCTCACTCTGCCAGGGTGATGTGCAGTTGGgtaagaagctgggggactttctgggaccacacaactgcatgctggggctc Alignment from Exonerate_protein2genome GGTGCCAACCTTCTGCTCACTCTG-CAGGGTGATGTCAAGCTGG gaagcctagaggtgtacccagcatatatctcctttcttgtttcctcatagGGTGCGAACCTTCTGCTCACTCTGCCAGGGTGATGTGCAGTTGGgtaagaagctgggggactttctgggaccacacaactgcatgctggggctc Alignment from Exonerate_coding2genome gaagcctagaggtgtacccagcatatatctcctttcttgtttcctcatagggtgcgaaccttctgctcactctgccagggtgatgtgcagttgggtaagaagctgggggactttctgggaccacacaactgcatgctggggctc Alignment from GeneWise gaagcctagaggtgtacccagcatatatctcctttcttgtttcctcatagggtgcgaaccttctgctcactctgccagggtgatgtgcagttgggtaagaagctgggggactttctgggaccacacaactgcatgctggggctc #### Map4k2_ID1631_10 --> 1 - 2 Original Alignment gGCCTTGATGCTCATGTCG-AAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTtg cttgcttgtccccctgatgacccttgacggtctcgctgctttgatcacaggGCACTGATGCTCATGTCACAAGAGTAGTTTCCAGCCACCTAAGCTAAGAGATAAGACACGTtggtatggctccactcacaactgagaaatttccagcctactgtatgagagag Alignment from CESAR gGCCTTGATGCTCATGTCG-AAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTtg cttgcttgtccccctgatgacccttgacggtctcgctgctttgatcacaggGCACTGATGCTCATGTCACAAGAGTAGTTTCCAGCCACCTAAGCTAAGAGATAAGACACGTtggtatggctccactcacaactgagaaatttccagcctactgtatgagagag Alignment from Spaln_aa2Genome GGCCTTGATGCTCATGTCG-AAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTTG cttgcttgtccccctgatgacccttgacggtctcgctgctttgatcacagGGCACTGATGCTCATGTCAcAAGAGTAGTTTCCAGCCACCTAAGCTAAGAGATAAGACACGTTGgtatggctccactcacaactgagaaatttccagcctactgtatgagagag Alignment from Spaln_nt2Genome GGCCTTGATGCTCATGTCGAAA-AGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTTG cttgcttgtccccctgatgacccttgacggtctcgctgctttgatcacagGGCACTGATGCTCATGTCACAAGAGTAGTTTCCAGCCACCTAAGCTAAGAGATAAGACACGTTGgtatggctccactcacaactgagaaatttccagcctactgtatgagagag Alignment from Pairagon GGCCTTGATGCTCATGTCG-AAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTTG cttgcttgtccccctgatgacccttgacggtctcgctgctttgatcacagGGCACTGATGCTCATGTCACAAGAGTAGTTTCCAGCCACCTAAGCTAAGAGATAAGACACGTTGgtatggctccactcacaactgagaaatttccagcctactgtatgagagag Alignment from Exonerate_protein2genome GGCCTTGATGCTCATGTCG-AAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTTG cttgcttgtccccctgatgacccttgacggtctcgctgctttgatcacagGGCACTGATGCTCATGTCACAAGAGTAGTTTCCAGCCACCTAAGCTAAGAGATAAGACACGTTGgtatggctccactcacaactgagaaatttccagcctactgtatgagagag Alignment from Exonerate_coding2genome GGCCTTGATGCTCATGTCG-AAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTTG cttgcttgtccccctgatgacccttgacggtctcgctgctttgatcacagGGCACTGATGCTCATGTCACAAGAGTAGTTTCCAGCCACCTAAGCTAAGAGATAAGACACGTTGgtatggctccactcacaactgagaaatttccagcctactgtatgagagag Alignment from GeneWise GGCCTTGATGCTCATG-TCGAAAAGCAGCTTCCAGCCACCCAAGCTAAGAGATAAGACGCGTTG cttgcttgtccccctgatgacccttgacggtctcgctgctttgatcacagGGCACTGATGCTCATGTCACAAGAGTAGTTTCCAGCCACCTAAGCTAAGAGATAAGACACGTTGgtatggctccactcacaactgagaaatttccagcctactgtatgagagag #### Map4k2_ID1633_12 --> 0 - 0 Original Alignment CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACC-CTCTCCCCTGAAGACAGTGAGCTGGAG gaaaaagtgacctggagggcagccaactccagaccctctctttcccatagCATCCATTCACAACCCAGCATCTCCCTCCAGCACTTCTTACCCAACTCCTTGACAAGGCTAGTGACCCCCATCTAGGTACCCCTCTCCCCTGAAGATAGTAAGCTTAAGgtaagtgcaggcagggaactgggtttgcttggcttggtgggtaggtggta Alignment from CESAR CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACC-CTCTCCCCTGAAGACAGTGAGCTGGAG gaaaaagtgacctggagggcagccaactccagaccctctctttcccatagCATCCATTCACAACCCAGCATCTCCCTCCAGCACTTCTTACCCAACTCCTTGACAAGGCTAGTGACCCCCATCTAGGTACCCCTCTCCCCTGAAGATAGTAAGCTTAAGgtaagtgcaggcagggaactgggtttgcttggcttggtgggtaggtggta Alignment from Spaln_aa2Genome CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACC-CTCTCCCCTGAAGACAGTGAGCTGGAG gaaaaagtgacctggagggcagccaactccagaccctctctttcccatagCATCCATTCACAACCCAGCATCTCCCTCCAGCACTTCTTACCCAACTCCTTGACAAGGCTAGTGACCCCCATCTAGGTACCcCTCTCCCCTGAAGATAGTAAGCTTAAGgtaagtgcaggcagggaactgggtttgcttggcttggtgggtaggtggta Alignment from Spaln_nt2Genome CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACC-CTCTCCCCTGAAGACAGTGAGCTGGAG gaaaaagtgacctggagggcagccaactccagaccctctctttcccatagCATCCATTCACAACCCAGCATCTCCCTCCAGCACTTCTTACCCAACTCCTTGACAAGGCTAGTGACCCCCATCTAGGTACCCCTCTCCCCTGAAGATAGTAAGCTTAAGgtaagtgcaggcagggaactgggtttgcttggcttggtgggtaggtggta Alignment from Pairagon ------------------------------------------------AGCACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGG-AACCCTCTCCCCTGAAGACAGTGAGCTGGAG GAAAAAGTGACCTGGAGGGCAGCCAACTCCAGACCCTCTCTTTCCCATAGCATCCATTCACAACCCAGCATCTCCCTCCAGCACTTCTTACCCAACTCCTTGACAAGGCTAGTGACCCCCATCTAGGTACCCCTCTCCCCTGAAGATAGTAAGCTTAAGgtaagtgcaggcagggaactgggtttgcttggcttggtgggtaggtggta Alignment from Exonerate_protein2genome CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACC-CTCTCCCCTGAAGACAGTGAGCTGGAG gaaaaagtgacctggagggcagccaactccagaccctctctttcccatagCATCCATTCACAACCCAGCATCTCCCTCCAGCACTTCTTACCCAACTCCTTGACAAGGCTAGTGACCCCCATCTAGGTACCCCTCTCCCCTGAAGATAGTAAGCTTAAGgtaagtgcaggcagggaactgggtttgcttggcttggtgggtaggtggta Alignment from Exonerate_coding2genome CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACC-CTCTCCCCTGAAGACAGTGAGCTGGAG gaaaaagtgacctggagggcagccaactccagaccctctctttcccatagCATCCATTCACAACCCAGCATCTCCCTCCAGCACTTCTTACCCAACTCCTTGACAAGGCTAGTGACCCCCATCTAGGTACCCCTCTCCCCTGAAGATAGTAAGCTTAAGgtaagtgcaggcagggaactgggtttgcttggcttggtgggtaggtggta Alignment from GeneWise CACCCATTCACGACCCAGCATCTCCCTCCGGCCCTCCTCACCCAGCTCCTCGACAAGGCCAGTGACCCCCACCTGGGAACC-CTCTCCCCTGAAGACAGTGAGCTGGAG gaaaaagtgacctggagggcagccaactccagaccctctctttcccatagCATCCATTCACAACCCAGCATCTCCCTCCAGCACTTCTTACCCAACTCCTTGACAAGGCTAGTGACCCCCATCTAGGTACCCCTCTCCCCTGAAGATAGTAAGCTTAAGgtaagtgcaggcagggaactgggtttgcttggcttggtgggtaggtggta #### Map4k2_ID1636_15 --> 0 - 2 Original Alignment TGGGAGGAGGAGTGGACGCTC-CTGGGAAAAGAGGAACTGAGTgg cttcccattttgtgtctacttctcttcatatcttttttgactatgtgcagTGGGAGGAGGAGTGGACGCTCCCTGGGAAAAGAGGAACTGAGCgggtgagtgagagtggttgggaaagcaggggtgcaagcagaccctgttgaag Alignment from CESAR TGGGAGGAGGAGTGGACGCTC-CTGGGAAAAGAGGAACTGAGTgg cttcccattttgtgtctacttctcttcatatcttttttgactatgtgcagTGGGAGGAGGAGTGGACGCTCCCTGGGAAAAGAGGAACTGAGCgggtgagtgagagtggttgggaaagcaggggtgcaagcagaccctgttgaag Alignment from Spaln_aa2Genome TGGGAGGAGGAGTGGACGCTC-CTGGGAAAAGAGGAACTGAGTGG cttcccattttgtgtctacttctcttcatatcttttttgactatgtgcagTGGGAGGAGGAGTGGACGCTCcCTGGGAAAAGAGGAACTGAGCGGgtgagtgagagtggttgggaaagcaggggtgcaagcagaccctgttgaag Alignment from Spaln_nt2Genome TGGGAGGAGGAGTGGACGCT-CCTGGGAAAAGAGGAACTGAGTGG cttcccattttgtgtctacttctcttcatatcttttttgactatgtgcagTGGGAGGAGGAGTGGACGCTCCCTGGGAAAAGAGGAACTGAGCGGgtgagtgagagtggttgggaaagcaggggtgcaagcagaccctgttgaag Alignment from Pairagon TGGGAGGAGGAGTGGACGCT-CCTGGGAAAAGAGGAACTGAGTGG cttcccattttgtgtctacttctcttcatatcttttttgactatgtgcagTGGGAGGAGGAGTGGACGCTCCCTGGGAAAAGAGGAACTGAGCGGgtgagtgagagtggttgggaaagcaggggtgcaagcagaccctgttgaag Alignment from Exonerate_protein2genome TGGGAGGAGGAGTGGACGCTC-CTGGGAAAAGAGGAACTGAGTGG cttcccattttgtgtctacttctcttcatatcttttttgactatgtgcagTGGGAGGAGGAGTGGACGCTCCCTGGGAAAAGAGGAACTGAGCGGgtgagtgagagtggttgggaaagcaggggtgcaagcagaccctgttgaag Alignment from Exonerate_coding2genome TGGGAGGAGGAGTGGACGCTC-CTGGGAAAAGAGGAACTGAGTGG cttcccattttgtgtctacttctcttcatatcttttttgactatgtgcagTGGGAGGAGGAGTGGACGCTCCCTGGGAAAAGAGGAACTGAGCGGgtgagtgagagtggttgggaaagcaggggtgcaagcagaccctgttgaag Alignment from GeneWise TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGGGAGCCTGCTGCAGTCAGTCCAGGAGGCCCTGGAGGAAAGGAGCCTGACTATCCGGCCA- cttcccattttgtgtctacttctcttcatatcttttttgactatgtgcagTGGGAGGAGGAGTGGACGCTCCCTGGGAAAAGAGGAACT---------------GAGCGGGTGAGTGAGAGTGGTTGGGAAAGCAGGGGTGCAAGCAGACCCTgttgaag #### Map4k2_ID1638_17 --> 1 - 0 Original Alignment gAGCCTGACTATCCGGCCA-GCCTTAGAACTCCAG acagtccctcttacaaataataataccataaatactttctttttcaataggAGCCTGGCTATCCGGCCACGCCTTAGAACTTCAGgtaaatgttgataagtgtgatactagaaatggactcataaactagtgcgc Alignment from CESAR gAGCCTGACTATCCGGCCA-GCCTTAGAACTCCAG acagtccctcttacaaataataataccataaatactttctttttcaataggAGCCTGGCTATCCGGCCACGCCTTAGAACTTCAGgtaaatgttgataagtgtgatactagaaatggactcataaactagtgcgc Alignment from Spaln_aa2Genome GAGCCTGACTATCCGGCCA-GCCTTAGAACTCCAG acagtccctcttacaaataataataccataaatactttctttttcaatagGAGCCTGGCTATCCGGCCAcGCCTTAGAACTTCAGgtaaatgttgataagtgtgatactagaaatggactcataaactagtgcgc Alignment from Spaln_nt2Genome GAGCCTGACTATCCGGCCA-GCCTTAGAACTCCAG acagtccctcttacaaataataataccataaatactttctttttcaatagGAGCCTGGCTATCCGGCCACGCCTTAGAACTTCAGgtaaatgttgataagtgtgatactagaaatggactcataaactagtgcgc Alignment from Pairagon GAGCCTGACTATCCGGCCA-GCCTTAGAACTCCAG acagtccctcttacaaataataataccataaatactttctttttcaatagGAGCCTGGCTATCCGGCCACGCCTTAGAACTTCAGgtaaatgttgataagtgtgatactagaaatggactcataaactagtgcgc Alignment from Exonerate_protein2genome acagtccctcttacaaataataataccataaatactttctttttcaataggagcctggctatccggccacgccttagaacttcaggtaaatgttgataagtgtgatactagaaatggactcataaactagtgcgc Alignment from Exonerate_coding2genome acagtccctcttacaaataataataccataaatactttctttttcaataggagcctggctatccggccacgccttagaacttcaggtaaatgttgataagtgtgatactagaaatggactcataaactagtgcgc Alignment from GeneWise acagtccctcttacaaataataataccataaatactttctttttcaataggagcctggctatccggccacgccttagaacttcaggtaaatgttgataagtgtgatactagaaatggactcataaactagtgcgc #### Map4k2_ID1640_19 --> 2 - 0 Original Alignment gtACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCT-ACTCTGAAGCAACAGGAGGATCGTGAG ttggggacgtgccaggggctggcatcacttttcttttttttcatttacaggcACCTTGTCAGCCCCCCCAGCTGGTCCTGATAGCCACGCACTGCTACCAACTGCTTGGGCTCACCCTAAAGCAGCAAGAGGATCGTGAGgtaaaagagataacagaagggtaagggtgggagacctggaccccgcttac Alignment from CESAR gtACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCT-ACTCTGAAGCAACAGGAGGATCGTGAG ttggggacgtgccaggggctggcatcacttttcttttttttcatttacaggcACCTTGTCAGCCCCCCCAGCTGGTCCTGATAGCCACGCACTGCTACCAACTGCTTGGGCTCACCCTAAAGCAGCAAGAGGATCGTGAGgtaaaagagataacagaagggtaagggtgggagacctgttcctctgtctc Alignment from Spaln_aa2Genome GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCT-ACTCTGAAGCAACAGGAGGATCGTGAG ttggggacgtgccaggggctggcatcacttttcttttttttcatttacagGCACCTTGTCAGCCCCCCCAGCTGGTCCTGATAGCCACGCACTGCTACCAACTGCTTGGGCTcACCCTAAAGCAGCAAGAGGATCGTGAGgtaaaagagataacagaagggtaagggtgggagacctggaccccgcttac Alignment from Spaln_nt2Genome GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCT-ACTCTGAAGCAACAGGAGGATCGTGAG ttggggacgtgccaggggctggcatcacttttcttttttttcatttacagGCACCTTGTCAGCCCCCCCAGCTGGTCCTGATAGCCACGCACTGCTACCAACTGCTTGGGCTCACCCTAAAGCAGCAAGAGGATCGTGAGgtaaaagagataacagaagggtaagggtgggagacctggaccccgcttac Alignment from Pairagon GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCT-ACTCTGAAGCAACAGGAGGATCGTGAG ttggggacgtgccaggggctggcatcacttttcttttttttcatttacagGCACCTTGTCAGCCCCCCCAGCTGGTCCTGATAGCCACGCACTGCTACCAACTGCTTGGGCTCACCCTAAAGCAGCAAGAGGATCGTGAGgtaaaagagataacagaagggtaagggtgggagacctggaccccgcttac Alignment from Exonerate_protein2genome GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCT-ACTCTGAAGCAACAGGAGGATCGTGAG ttggggacgtgccaggggctggcatcacttttcttttttttcatttacagGCACCTTGTCAGCCCCCCCAGCTGGTCCTGATAGCCACGCACTGCTACCAACTGCTTGGGCTCACCCTAAAGCAGCAAGAGGATCGTGAGgtaaaagagataacagaagggtaagggtgggagacctggaccccgcttac Alignment from Exonerate_coding2genome GT---ACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGA ttggggacgtgccaggggctggcatcacttttcttttttttcatttacaggcaccttgtcagcccccccagctggtcctgatagccacgcactgctaccaactgcttgGGCTCACCCTAAAGCAGCAAGAGGATCGTGAGGTAAAAGAGATAACAGAAGGGTAAGGGTGGGAGACCTGGACCCCGCTTAC Alignment from GeneWise GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGG-GCTACTCTGAAGCAACAGGAGGATCGTGAG ttggggacgtgccaggggctggcatcacttttcttttttttcatttacagGCACCTTGTCAGCCCCCCCAGCTGGTCCTGATAGCCACGCACTGCTACCAACTGCTTGGGCTCACCCTAAAGCAGCAAGAGGATCGTGAGgtaaaagagataacagaagggtaagggtgggagacctggaccccgcttac #### Map4k2_ID1641_20 --> 0 - 0 Original Alignment CGATCATCCTGC-CATGGGCTTCCTCCCACCCCCAAGGTGCAC taacagaagggtaagggtgggagacctgttcctctgtctcctccctgcagCGGTCATCCTGCCTATGGTCTTCCTCCCACCCCTAAGGTCCCTgtaagtggtgacagatgtccctgggccatagccctggccctgcatcttgg Alignment from CESAR CGATCATCCTGC-CATGGGCTTCCTCCCACCCCCAAGGTGCAC taacagaagggtaagggtgggagacctgttcctctgtctcctccctgcagCGGTCATCCTGCCTATGGTCTTCCTCCCACCCCTAAGGTCCCTgtaagtggtgacagatgtccctgggccatagccctggccctgcatcttgg Alignment from Spaln_aa2Genome CGATCATCCTGC-CATGGGCTTCCTCCCACCCCCAAGGTGCAC taacagaagggtaagggtgggagacctgttcctctgtctcctccctgcagCGGTCATCCTGCcTATGGTCTTCCTCCCACCCCTAAGGTCCCTgtaagtggtgacagatgtccctgggccatagccctggccctgcatcttgg Alignment from Spaln_nt2Genome CGATCATCCTGCC-ATGGGCTTCCTCCCACCCCCAAGGTGCAC taacagaagggtaagggtgggagacctgttcctctgtctcctccctgcagCGGTCATCCTGCCTATGGTCTTCCTCCCACCCCTAAGGTCCCTgtaagtggtgacagatgtccctgggccatagccctggccctgcatcttgg Alignment from Pairagon CGATCATCCTGCC-ATGGGCTTCCTCCCACCCCCAAGGTGCAC taacagaagggtaagggtgggagacctgttcctctgtctcctccctgcagCGGTCATCCTGCCTATGGTCTTCCTCCCACCCCTAAGGTCCCTgtaagtggtgacagatgtccctgggccatagccctggccctgcatcttgg Alignment from Exonerate_protein2genome CGATCATCCTGC-CATGGGCTTCCTCCCACCCCCAAGGTGCAC taacagaagggtaagggtgggagacctgttcctctgtctcctccctgcagCGGTCATCCTGCCTATGGTCTTCCTCCCACCCCTAAGGTCCCTgtaagtggtgacagatgtccctgggccatagccctggccctgcatcttgg Alignment from Exonerate_coding2genome taacagaagggtaagggtgggagacctgttcctctgtctcctccctgcagcggtcatcctgcctatggtcttcctcccacccctaaggtccctgtaagtggtgacagatgtccctgggccatagccctggccctgcatcttgg Alignment from GeneWise CGATCATCCTGC-CATGGGCTTCCTCCCACCCCCAAGGTGCAC taacagaagggtaagggtgggagacctgttcctctgtctcctccctgcagCGGTCATCCTGCCTATGGTCTTCCTCCCACCCCTAAGGTCCCTgtaagtggtgacagatgtccctgggccatagccctggccctgcatcttgg #### Map4k2_ID1643_22 --> 2 - 0 Original Alignment acCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAAC-CTGCACGAACTGCACGAGGACACAATGGAGAAG agctatatacagagggcagcacgacatgggcctttttcctgctcctgcagacCAGTTCCTGGTAGTAGGAGCTAAGGAGGGCTTCTATACCCTTAACCCTGCATAAACTGCATGAGGATAGAATGGAGAAGgtgacgcttgttggccctccctcttgttcccctgcctatccctcccacag Alignment from CESAR acCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAAC-CTGCACGAACTGCACGAGGACACAATGGAGAAG agctatatacagagggcagcacgacatgggcctttttcctgctcctgcagacCAGTTCCTGGTAGTAGGAGCTAAGGAGGGCTTCTATACCCTTAACCCTGCATAAACTGCATGAGGATAGAATGGAGAAGgtgacgcttgttggccctccctcttgttcttaaaaaaattccctgtgcag Alignment from Spaln_aa2Genome ACCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAAC-CTGCACGAACTGCACGAGGACACAATGGAGAAG agctatatacagagggcagcacgacatgggcctttttcctgctcctgcagACCAGTTCCTGGTAGTAGGAGCTAAGGAGGGCTTCTATACCCTTAACcCTGCATAAACTGCATGAGGATAGAATGGAGAAGgtgacgcttgttggccctccctcttgttcccctgcctatccctcccacag Alignment from Spaln_nt2Genome ACCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAACC-TGCACGAACTGCACGAGGACACAATGGAGAAG agctatatacagagggcagcacgacatgggcctttttcctgctcctgcagACCAGTTCCTGGTAGTAGGAGCTAAGGAGGGCTTCTATACCCTTAACCCTGCATAAACTGCATGAGGATAGAATGGAGAAGgtgacgcttgttggccctccctcttgttcccctgcctatccctcccacag Alignment from Pairagon ACCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAA-CCTGCACGAACTGCACGAGGACACAATGGAGAAG agctatatacagagggcagcacgacatgggcctttttcctgctcctgcagACCAGTTCCTGGTAGTAGGAGCTAAGGAGGGCTTCTATACCCTTAACCCTGCATAAACTGCATGAGGATAGAATGGAGAAGgtgacgcttgttggccctccctcttgttcccctgcctatccctcccacag Alignment from Exonerate_protein2genome ACCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAAC-CTGCACGAACTGCACGAGGACACAATGGAGAAG agctatatacagagggcagcacgacatgggcctttttcctgctcctgcagACCAGTTCCTGGTAGTAGGAGCTAAGGAGGGCTTCTATACCCTTAACCCTGCATAAACTGCATGAGGATAGAATGGAGAAGgtgacgcttgttggccctccctcttgttcccctgcctatccctcccacag Alignment from Exonerate_coding2genome ACCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAAC-CTGCACGAACTGCACGAGGACACAATGGAGAAG agctatatacagagggcagcacgacatgggcctttttcctgctcctgcagACCAGTTCCTGGTAGTAGGAGCTAAGGAGGGCTTCTATACCCTTAACCCTGCATAAACTGCATGAGGATAGAATGGAGAAGgtgacgcttgttggccctccctcttgttcccctgcctatccctcccacag Alignment from GeneWise ACCAGTTCCTGGTGGTAGGGGCTGAGGAGGGCATCTATACCCTCAAC-CTGCACGAACTGCACGAGGACACAATGGAGAAG agctatatacagagggcagcacgacatgggcctttttcctgctcctgcagACCAGTTCCTGGTAGTAGGAGCTAAGGAGGGCTTCTATACCCTTAACCCTGCATAAACTGCATGAGGATAGAATGGAGAAGgtgacgcttgttggccctccctcttgttcccctgcctatccctcccacag #### Map4k2_ID1644_23 --> 0 - 1 Original Alignment CTCATCTCCCAG-CGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAg gtatgccttgttggccctccctcttgttcttaaaaaaattccctgtgcagCTCATTTCTCAGCCGCTACTCATGGCTCTACTGTGTGAACAATGTATTGCTGGCACTCTCAggtgagtgatggcagttgtagaggcagccgggataacatgttcccaaggtt Alignment from CESAR CTCATCTCCCAG-CGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAg gtgacgcttgttggccctccctcttgttcttaaaaaaattccctgtgcagCTCATTTCTCAGCCGCTACTCATGGCTCTACTGTGTGAACAATGTATTGCTGGCACTCTCAggtgagtgatggcagttgtagaggcagccgggataacatgttcccaaggtt Alignment from Spaln_aa2Genome CTCATCTCCCAG-CGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG gtatgccttgttggccctccctcttgttcttaaaaaaattccctgtgcagCTCATTTCTCAGcCGCTACTCATGGCTCTACTGTGTGAACAATGTATTGCTGGCACTCTCAGgtgagtgatggcagttgtagaggcagccgggataacatgttcccaaggtt Alignment from Spaln_nt2Genome CTCATCTCCCAGC-GCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG gtatgccttgttggccctccctcttgttcttaaaaaaattccctgtgcagCTCATTTCTCAGCCGCTACTCATGGCTCTACTGTGTGAACAATGTATTGCTGGCACTCTCAGgtgagtgatggcagttgtagaggcagccgggataacatgttcccaaggtt Alignment from Pairagon CTCATCTCCCAG-CGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG gtatgccttgttggccctccctcttgttcttaaaaaaattccctgtgcagCTCATTTCTCAGCCGCTACTCATGGCTCTACTGTGTGAACAATGTATTGCTGGCACTCTCAGgtgagtgatggcagttgtagaggcagccgggataacatgttcccaaggtt Alignment from Exonerate_protein2genome CTCATCTCCCAG-CGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG gtatgccttgttggccctccctcttgttcttaaaaaaattccctgtgcagCTCATTTCTCAGCCGCTACTCATGGCTCTACTGTGTGAACAATGTATTGCTGGCACTCTCAGgtgagtgatggcagttgtagaggcagccgggataacatgttcccaaggtt Alignment from Exonerate_coding2genome CTCATCTCCCAG-CGCTGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG gtatgccttgttggccctccctcttgttcttaaaaaaattccctgtgcagCTCATTTCTCAGCCGCTACTCATGGCTCTACTGTGTGAACAATGTATTGCTGGCACTCTCAGgtgagtgatggcagttgtagaggcagccgggataacatgttcccaaggtt Alignment from GeneWise CTCATCTCCCAGCGC-TGCTCCTGGCTCTACTGTGTGAACAATGTGTTGCTGTCGCTCTCAG gtatgccttgttggccctccctcttgttcttaaaaaaattccctgtgcagCTCATTTCTCAGCCGCTACTCATGGCTCTACTGTGTGAACAATGTATTGCTGGCACTCTCAGgtgagtgatggcagttgtagaggcagccgggataacatgttcccaaggtt #### Map4k2_ID1649_28 --> 2 - 1 Original Alignment agGGGATCCCAGGTTCTGCACAGCAGGTGATC-CAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAc tgctagcatcgacacccagtgagaggccgctgagcacgtccttctcgcagagGGGATTCCAGGCCCTGCACAACAAGTAATCCCAGGTGGATCGGGACAAAGTCTTGGTCAGCTTTGAAcgtaggtgcctcaatgtcaaaagggggttatagacagagtgggagtcaagc Alignment from CESAR agGGGATCCCAGGTTCTGCACAGCAGGTGATC-CAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAc tgctagcatcgacacccagtgagaggccgctgagcacgtccttctcgcagagGGGATTCCAGGCCCTGCACAACAAGTAATCCCAGGTGGATCGGGACAAAGTCTTGGTCAGCTTTGAAcgtaggtgcctcaatgtcaaaagggggttatagacagagtgggagtcaagc Alignment from Spaln_aa2Genome AGGGGATCCCAGGTTCTGCACAGCAGGTGATC-CAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAC tgctagcatcgacacccagtgagaggccgctgagcacgtccttctcgcagAGGGGATTCCAGGCCCTGCACAACAAGTAATCcCAGGTGGATCGGGACAAAGTCTTGGTCAGCTTTGAACgtaggtgcctcaatgtcaaaagggggttatagacagagtgggagtcaagc Alignment from Spaln_nt2Genome AGGGGATCCCAGGTTCTGCACAGCAGGTGATCCAAG-TGGACAGGGACACAGTCCTGGTCAGCTTTGAAC tgctagcatcgacacccagtgagaggccgctgagcacgtccttctcgcagAGGGGATTCCAGGCCCTGCACAACAAGTAATCCCAGGTGGATCGGGACAAAGTCTTGGTCAGCTTTGAACgtaggtgcctcaatgtcaaaagggggttatagacagagtgggagtcaagc Alignment from Pairagon AGGGGATCCCAGGTTCTGCACAGCAGGTGAT-CCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAC tgctagcatcgacacccagtgagaggccgctgagcacgtccttctcgcagAGGGGATTCCAGGCCCTGCACAACAAGTAATCCCAGGTGGATCGGGACAAAGTCTTGGTCAGCTTTGAACgtaggtgcctcaatgtcaaaagggggttatagacagagtgggagtcaagc Alignment from Exonerate_protein2genome AGGGGATCCCAGGTTCTGCACAGCAGGTGATC-CAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAC tgctagcatcgacacccagtgagaggccgctgagcacgtccttctcgcagAGGGGATTCCAGGCCCTGCACAACAAGTAATCCCAGGTGGATCGGGACAAAGTCTTGGTCAGCTTTGAACgtaggtgcctcaatgtcaaaagggggttatagacagagtgggagtcaagc Alignment from Exonerate_coding2genome AGGGGATCCCAGGTTCTGCACAGCAGGTGATC-CAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAC tgctagcatcgacacccagtgagaggccgctgagcacgtccttctcgcagAGGGGATTCCAGGCCCTGCACAACAAGTAATCCCAGGTGGATCGGGACAAAGTCTTGGTCAGCTTTGAACgtaggtgcctcaatgtcaaaagggggttatagacagagtgggagtcaagc Alignment from GeneWise AGGGGATCCCAGGTTCTGCACAGCAGGTG-ATCCAAGTGGACAGGGACACAGTCCTGGTCAGCTTTGAAC tgctagcatcgacacccagtgagaggccgctgagcacgtccttctcgcagAGGGGATTCCAGGCCCTGCACAACAAGTAATCCCAGGTGGATCGGGACAAAGTCTTGGTCAGCTTTGAACgtaggtgcctcaatgtcaaaagggggttatagacagagtgggagtcaagc #### Map4k2_ID1652_31 --> 0 - 2 Original Alignment GTGACGCAGGAGATAACAGATGAGACCAGGATCTTC-CGAGTACTGGGGGCTCACag ctgagaaggacattgggacggcctcaggtatgtttgttctctacttacagGTGACGCAGGAGATAACAGATGATGCTAGGATCTTCCCGAGTGCTTGGAGCCCATaggtaggtgcaaaacaggcctccttgatttgtaaagttgtagggactcactg Alignment from CESAR GTGACGCAGGAGATAACAGATGAGACCAGGATCTTC-CGAGTACTGGGGGCTCACag ctgagaaggacattgggacggcctcaggtatgtttgttctctacttacagGTGACGCAGGAGATAACAGATGATGCTAGGATCTTCCCGAGTGCTTGGAGCCCATaggtaggtgcaaaacaggcctccttgatttgtaaagttgtaggggaactcag Alignment from Spaln_aa2Genome GTGACGCAGGAGATAACAGATGAGACCAGGATCTTC-CGAGTACTGGGGGCTCACAG ctgagaaggacattgggacggcctcaggtatgtttgttctctacttacagGTGACGCAGGAGATAACAGATGATGCTAGGATCTTCcCGAGTGCTTGGAGCCCATAGgtaggtgcaaaacaggcctccttgatttgtaaagttgtagggactcactg Alignment from Spaln_nt2Genome GTGACGCAGGAGATAACAGATGAGACCAGGATCTTCC-GAGTACTGGGGGCTCACAG ctgagaaggacattgggacggcctcaggtatgtttgttctctacttacagGTGACGCAGGAGATAACAGATGATGCTAGGATCTTCCCGAGTGCTTGGAGCCCATAGgtaggtgcaaaacaggcctccttgatttgtaaagttgtagggactcactg Alignment from Pairagon GTGACGCAGGAGATAACAGATGAGACCAGGATCTT-CCGAGTACTGGGGGCTCACAG ctgagaaggacattgggacggcctcaggtatgtttgttctctacttacagGTGACGCAGGAGATAACAGATGATGCTAGGATCTTCCCGAGTGCTTGGAGCCCATAGgtaggtgcaaaacaggcctccttgatttgtaaagttgtagggactcactg Alignment from Exonerate_protein2genome GTGACGCAGGAGATAACAGATGAGACCAGGATCTTC-CGAGTACTGGGGGCTCACAG ctgagaaggacattgggacggcctcaggtatgtttgttctctacttacagGTGACGCAGGAGATAACAGATGATGCTAGGATCTTCCCGAGTGCTTGGAGCCCATAGgtaggtgcaaaacaggcctccttgatttgtaaagttgtagggactcactg Alignment from Exonerate_coding2genome GTGACGCAGGAGATAACAGATGAGACCAGGATCTTC-CGAGTACTGGGGGCTCACAG ctgagaaggacattgggacggcctcaggtatgtttgttctctacttacagGTGACGCAGGAGATAACAGATGATGCTAGGATCTTCCCGAGTGCTTGGAGCCCATAGgtaggtgcaaaacaggcctccttgatttgtaaagttgtagggactcactg Alignment from GeneWise AGATGAGACC ctgagaaggacattgggacggcctcaggtatgtttgttctctacttacaggtgacgcaggagataacagatgatgctaggatcttcccgagtgcttggagcccataggtaggtgcaaaacaggcctccttgatttgtaaagttgtagGGACTCACTG #### Mark2_ID2108_13 --> 2 - 0 Original Alignment ccGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAA-GAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG ccaaaaggacctgtacagagagattgggctcacctttcgttcctgtctagctGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAATGCAGAAAACAAGCGCCCTGAGGAACGAAACGGGGCGAAGAGCCAGCAGCACTGCCAAAGTGCCCACCAGCCCACTGCCAGGCCTGGACAGGAAGAAGACTACT---GCACCCTCCACAgtaagccttgagctactacccacggggctggcctcccccttatttgccct Alignment from CESAR ccGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAA-GAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG ccaaaaggacctgtacagagagattgggctcacctttcgttcctgtctagctGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAATGCAGAAAACAAGCGCCCTGAGGAACGAAACGGGGCGAAGAGCCAGCAGCACTGCCAAAGTGCCCACCAGCCCACTGCCAGGCCTGGACAGGAAGAAGACTACT---GCACCCTCCACAgtaagccttgagctactacccacggggctggcctcccccttatttgccct Alignment from Spaln_aa2Genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAA-GAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG ccaaaaggacctgtacagagagattgggctcacctttcgttcctgtctagCTGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAATGCAGAAAACAAGCGCCCTGAGGAAcGAAACGGGGCGAAGAGCCAGCAGCACTGCCAAAGTGCCCACCAGCCCACTGCCAGGCCTGGACAGGAAGAAGACTACT---GCACCCTCCACAgtaagccttgagctactacccacggggctggcctcccccttatttgccct Alignment from Spaln_nt2Genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAA-GAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG ccaaaaggacctgtacagagagattgggctcacctttcgttcctgtctagCTGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAATGCAGAAAACAAGCGCCCTGAGGAACGAAACGGGGCGAAGAGCCAGCAGCACTGCCAAAGTGCCCACCAGCCCACTGCCAGGCCTGGACAGGAAGAAG---ACTACTGCACCCTCCACAgtaagccttgagctactacccacggggctggcctcccccttatttgccct Alignment from Pairagon CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAA-GAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG ccaaaaggacctgtacagagagattgggctcacctttcgttcctgtctagCTGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAATGCAGAAAACAAGCGCCCTGAGGAACGAAACGGGGCGAAGAGCCAGCAGCACTGCCAAAGTGCCCACCAGCCCACTGCCAGGCCTGGACAGGAAGAAGACTA---CTGCACCCTCCACAgtaagccttgagctactacccacggggctggcctcccccttatttgccct Alignment from Exonerate_protein2genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAA-GAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG ccaaaaggacctgtacagagagattgggctcacctttcgttcctgtctagCTGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAATGCAGAAAACAAGCGCCCTGAGGAACGAAACGGGGCGAAGAGCCAGCAGCACTGCCAAAGTGCCCACCAGCCCACTGCCAGGCCTGGACAGGAAGAAGACTACT---GCACCCTCCACAgtaagccttgagctactacccacggggctggcctcccccttatttgccct Alignment from Exonerate_coding2genome CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAGGAA-GAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG ccaaaaggacctgtacagagagattgggctcacctttcgttcctgtctagCTGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAATGCAGAAAACAAGCGCCCTGAGGAACGAAACGGGGCGAAGAGCCAGCAGCACTGCCAAAGTGCCCACCAGCCCACTGCCAGGCCTGGACAGGAAGAAGACTACT---GCACCCTCCACAgtaagccttgagctactacccacggggctggcctcccccttatttgccct Alignment from GeneWise CCGTCCCTGCCATTCCCACCTCGAATTCCTACTCTAAGAAGACTCAGAGTAACAACGCAGAAAATAAGCGGCCTGAG-GAAGAGACAGGGCGGAAAGCCAGCAGCACCGCCAAAGTGCCTGCCAGCCCTCTGCCTGGCCTGGACAGGAAGAAGACCACTCCTGCCCCCTCCACG ccaaaaggacctgtacagagagattgggctcacctttcgttcctgtctagCTGTCCCTGGCATTCCCACCTCCAATTCCTACTCTAAGAAGACTCAGAGTAACAATGCAGAAAACAAGCGCCCTGAGGAACGAAACGGGGCGAAGAGCCAGCAGCACTGCCAAAGTGCCCACCAGCCCACTGCCAGGCCTGGACAGGAAGAAGACTACT---GCACCCTCCACAgtaagccttgagctactacccacggggctggcctcccccttatttgccct #### Mrpl11_ID767_2 --> 0 - 0 Original Alignment CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAA-GGCATTCCCCTGCCTACAAAAATTTTTATAAAG tccctgttgttgaaaattccagctctcgacaatgttatttattcatacagCGAGGTGTCTCAATTAACCAGTTCTGTAAAGAGTTCAATGAGAAGACAAAGGACATCAAAGAACGGCATTCTTCTGGCTACAAAAATTTTCATAGAGgtaaaagacccattcactaacttacttcagggccctagaatgtttgtctc Alignment from CESAR CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAA-GGCATTCCCCTGCCTACAAAAATTTTTATAAAG tccctgttgttgaaaattccagctctcgacaatgttatttattcatacagCGAGGTGTCTCAATTAACCAGTTCTGTAAAGAGTTCAATGAGAAGACAAAGGACATCAAAGAACGGCATTCTTCTGGCTACAAAAATTTTCATAGAGgtaaaagacccattcactaacttacttcagggccctagaatgtttgtctc Alignment from Spaln_aa2Genome CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAA-GGCATTCCCCTGCCTACAAAAATTTTTATAAAG tccctgttgttgaaaattccagctctcgacaatgttatttattcatacagCGAGGTGTCTCAATTAACCAGTTCTGTAAAGAGTTCAATGAGAAGACAAAGGACATCAAAGAAcGGCATTCTTCTGGCTACAAAAATTTTCATAGAGgtaaaagacccattcactaacttacttcagggccctagaatgtttgtctc Alignment from Spaln_nt2Genome CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAA-GGCATTCCCCTGCCTACAAAAATTTTTATAAAG tccctgttgttgaaaattccagctctcgacaatgttatttattcatacagCGAGGTGTCTCAATTAACCAGTTCTGTAAAGAGTTCAATGAGAAGACAAAGGACATCAAAGAACGGCATTCTTCTGGCTACAAAAATTTTCATAGAGgtaaaagacccattcactaacttacttcagggccctagaatgtttgtctc Alignment from Pairagon CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAA-GGCATTCCCCTGCCTACAAAAATTTTTATAAAG tccctgttgttgaaaattccagctctcgacaatgttatttattcatacagCGAGGTGTCTCAATTAACCAGTTCTGTAAAGAGTTCAATGAGAAGACAAAGGACATCAAAGAACGGCATTCTTCTGGCTACAAAAATTTTCATAGAGgtaaaagacccattcactaacttacttcagggccctagaatgtttgtctc Alignment from Exonerate_protein2genome CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAA-GGCATTCCCCTGCCTACAAAAATTTTTATAAAG tccctgttgttgaaaattccagctctcgacaatgttatttattcatacagCGAGGTGTCTCAATTAACCAGTTCTGTAAAGAGTTCAATGAGAAGACAAAGGACATCAAAGAACGGCATTCTTCTGGCTACAAAAATTTTCATAGAGgtaaaagacccattcactaacttacttcagggccctagaatgtttgtctc Alignment from Exonerate_coding2genome CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAAGAA-GGCATTCCCCTGCCTACAAAAATTTTTATAAAG tccctgttgttgaaaattccagctctcgacaatgttatttattcatacagCGAGGTGTCTCAATTAACCAGTTCTGTAAAGAGTTCAATGAGAAGACAAAGGACATCAAAGAACGGCATTCTTCTGGCTACAAAAATTTTCATAGAGgtaaaagacccattcactaacttacttcagggccctagaatgtttgtctc Alignment from GeneWise CGAGGTGTCTCTATCAACCAGTTCTGCAAAGAGTTCAACGAGAAGACAAAGGACATCAAA-GAAGGCATTCCCCTGCCTACAAAAATTTTTATAAAG tccctgttgttgaaaattccagctctcgacaatgttatttattcatacagCGAGGTGTCTCAATTAACCAGTTCTGTAAAGAGTTCAATGAGAAGACAAAGGACATCAAAGAACGGCATTCTTCTGGCTACAAAAATTTTCATAGAGgtaaaagacccattcactaacttacttcagggccctagaatgtttgtctc #### Mrpl11_ID768_3 --> 0 - 1 Original Alignment CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACT-GTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAg ttgaactgtatgggaaatgagtagattcctagtctctgtcttccccacagCCTGACAGGACTTTTGAACTCAAT---------------CGTTTCTTACTTGCTTAAGGCAGCTTCTGGCATTGAGAAGGGAGCCCGGCATACAggtgggcagtctggcggccatctgggtgtgtgaggaatcaagaaatcgaat Alignment from CESAR CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAg ttgaactgtatgggaaatgagtagattcctagtctctgtcttccccacagCCTGACAGGACTTTTGAACTC--AATC------------GTTTCTTACTTGCTTAAGGCAGCTTCTGGCATTGAGAAGGGAGCCCGGCATACAggtgggcagtctggcggccatctgggtgtgtgaggaatcaagaaatcgaat Alignment from Spaln_aa2Genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactgtatgggaaatgagtagattcctagtctctgtcttccccacagCCTGACAGGACTTTTGAACTCAATC--------------GTTTCTTACTTGCTTAAGGCAGCTTCTGGCATTGAGAAGGGAGCCCGGCATACAGgtgggcagtctggcggccatctgggtgtgtgaggaatcaagaaatcgaat Alignment from Spaln_nt2Genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactgtatgggaaatgagtagattcctagtctctgtcttccccacagCCTGACAGGACTTTTGAACTCA--------------ATCGTTTCTTACTTGCTTAAGGCAGCTTCTGGCATTGAGAAGGGAGCCCGGCATACAGgtgggcagtctggcggccatctgggtgtgtgaggaatcaagaaatcgaat Alignment from Pairagon CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactgtatgggaaatgagtagattcctagtctctgtcttccccacagCCTGACAGGACTTTTGAACTCA--------------ATCGTTTCTTACTTGCTTAAGGCAGCTTCTGGCATTGAGAAGGGAGCCCGGCATACAGgtgggcagtctggcggccatctgggtgtgtgaggaatcaagaaatcgaat Alignment from Exonerate_protein2genome CTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactgtatgggaaatgagtagattcctagtctctgtcttccccacagcctgacaggacttttgaactcaaTCGTTTCTTACTTGCTTAAGGCAGCTTCTGGCATTGAGAAGGGAGCCCGGCATACAGgtgggcagtctggcggccatctgggtgtgtgaggaatcaagaaatcgaat Alignment from Exonerate_coding2genome CTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactgtatgggaaatgagtagattcctagtctctgtcttccccacagcctgacaggacttttgaactcaaTCGTTTCTTACTTGCTTAAGGCAGCTTCTGGCATTGAGAAGGGAGCCCGGCATACAGgtgggcagtctggcggccatctgggtgtgtgaggaatcaagaaatcgaat Alignment from GeneWise CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG ttgaactgtatgggaaatgagtagattcctagtctctgtcttccccacagCCTGACAGGACTTTTGAACTCA--ATC------------GTTTCTTACTTGCTTAAGGCAGCTTCTGGCATTGAGAAGGGAGCCCGGCATACAGgtgggcagtctggcggccatctgggtgtgtgaggaatcaagaaatcgaat #### Mrpl43_ID9260_2 --> 1 - 1 Original Alignment gGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCA-CGAATAGTGGCCGAATACc aaactgatgcatgagctagtccttatactgttcactttccccttctgtaggGAGTTGGTGGAACGTGAGGTTACTGACTTTTCCCAATGGAACCCAGGAGTTGTGGTATATGTGAACTCTCGGCCATGCACCATGCCACCGAATGGTGGCAGAATACtgtgagtgtagctgagtgagggcaggggtgtgcagtgcatggtctactaca Alignment from CESAR gGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCA-CGAATAGTGGCCGAATACc aaactgatgcatgagctagtccttatactgttcactttccccttctgtaggGAGTTGGTGGAACGTGAGGTTACTGACTTTTCCCAATGGAACCCAGGAGTTGTGGTATATGTGAACTCTCGGCCATGCACCATGCCACCGAATGGTGGCAGAATACtgtgagtgtagctgagtgagggcaggggtgtgcagtgcatggtctactaca Alignment from Spaln_aa2Genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCA-CGAATAGTGGCCGAATACC aaactgatgcatgagctagtccttatactgttcactttccccttctgtagGGAGTTGGTGGAACGTGAGGTTACTGACTTTTCCCAATGGAACCCAGGAGTTGTGGTATATGTGAACTCTCGGCCATGCACCATGCCAcCGAATGGTGGCAGAATACTgtgagtgtagctgagtgagggcaggggtgtgcagtgcatggtctactaca Alignment from Spaln_nt2Genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCAC-GAATAGTGGCCGAATACC aaactgatgcatgagctagtccttatactgttcactttccccttctgtagGGAGTTGGTGGAACGTGAGGTTACTGACTTTTCCCAATGGAACCCAGGAGTTGTGGTATATGTGAACTCTCGGCCATGCACCATGCCACCGAATGGTGGCAGAATACTgtgagtgtagctgagtgagggcaggggtgtgcagtgcatggtctactaca Alignment from Pairagon GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCA-CGAATAGTGGCCGAATACC aaactgatgcatgagctagtccttatactgttcactttccccttctgtagGGAGTTGGTGGAACGTGAGGTTACTGACTTTTCCCAATGGAACCCAGGAGTTGTGGTATATGTGAACTCTCGGCCATGCACCATGCCACCGAATGGTGGCAGAATACTgtgagtgtagctgagtgagggcaggggtgtgcagtgcatggtctactaca Alignment from Exonerate_protein2genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCA-CGAATAGTGGCCGAATACC aaactgatgcatgagctagtccttatactgttcactttccccttctgtagGGAGTTGGTGGAACGTGAGGTTACTGACTTTTCCCAATGGAACCCAGGAGTTGTGGTATATGTGAACTCTCGGCCATGCACCATGCCACCGAATGGTGGCAGAATACTgtgagtgtagctgagtgagggcaggggtgtgcagtgcatggtctactaca Alignment from Exonerate_coding2genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCA-CGAATAGTGGCCGAATACC aaactgatgcatgagctagtccttatactgttcactttccccttctgtagGGAGTTGGTGGAACGTGAGGTTACTGACTTTTCCCAATGGAACCCAGGAGTTGTGGTATATGTGAACTCTCGGCCATGCACCATGCCACCGAATGGTGGCAGAATACTgtgagtgtagctgagtgagggcaggggtgtgcagtgcatggtctactaca Alignment from GeneWise GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAAT aaactgatgcatgagctagtccttatactgttcactttccccttctgtagGGAGTTGGTGGAACGTGAGGTTACTGACTTTTCCCAATGGAACCCAGGAGTTGTGGTATATGTGAACTCTCGGCCATGCACCATGCCA---------CCGAATGgtggcagaatactgtgagtgtagctgagtgagggcaggggtgtgcagtgcatggtctactaca #### Ms4a2_ID3243_2 --> 1 - 0 Original Alignment tGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAG-ACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattagaatatgctaagaaggttcttttcatccgcctctaagtGCACCTGACATTGAGCTCCTGGAAGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGCACATGGCGGACATTTCTGAAGAAAGAACTAGAGTTCCTGGGCgtgccattctggcctttattcccaatgacaaaagcgctgcctcctcctac Alignment from CESAR tGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAG-ACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattagaatatgctaagaaggttcttttcatccgcctctaagtGCACCTGACATTGAGCTCCTGGAAGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGCACATGGCGGACATTTCTGAAGAAAGAACTAGAGTTCCTGGGCgtgccattctggcctttattcccaatgacaaaagcgctgcctcctcctac Alignment from Spaln_aa2Genome TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAG-ACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattagaatatgctaagaaggttcttttcatccgcctctaagTGCACCTGACATTGAGCTCCTGGAAGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGcACATGGCGGACATTTCTGAAGAAAGAACTAGAGTTCCTGGGCgtgccattctggcctttattcccaatgacaaaagcgctgcctcctcctac Alignment from Spaln_nt2Genome TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAG-ACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattagaatatgctaagaaggttcttttcatccgcctctaagTGCACCTGACATTGAGCTCCTGGAAGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGCACATGGCGGACATTTCTGAAGAAAGAACTAGAGTTCCTGGGCgtgccattctggcctttattcccaatgacaaaagcgctgcctcctcctac Alignment from Pairagon TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAG-ACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattagaatatgctaagaaggttcttttcatccgcctctaagTGCACCTGACATTGAGCTCCTGGAAGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGCACATGGCGGACATTTCTGAAGAAAGAACTAGAGTTCCTGGGCgtgccattctggcctttattcccaatgacaaaagcgctgcctcctcctac Alignment from Exonerate_protein2genome TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAG-ACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattagaatatgctaagaaggttcttttcatccgcctctaagTGCACCTGACATTGAGCTCCTGGAAGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGCACATGGCGGACATTTCTGAAGAAAGAACTAGAGTTCCTGGGCgtgccattctggcctttattcccaatgacaaaagcgctgcctcctcctac Alignment from Exonerate_coding2genome TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAG-ACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattagaatatgctaagaaggttcttttcatccgcctctaagTGCACCTGACATTGAGCTCCTGGAAGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGCACATGGCGGACATTTCTGAAGAAAGAACTAGAGTTCCTGGGCgtgccattctggcctttattcccaatgacaaaagcgctgcctcctcctac Alignment from GeneWise TGCACCTGACATTGAACTCTTGGAAGCATCTCCTGCCAAAGCAGCCCCACCAAAGCAG-ACATGGCGGACATTTTTGAAGAAAGAGTTGGAGTTCCTGGGA acacagaggattagaatatgctaagaaggttcttttcatccgcctctaagTGCACCTGACATTGAGCTCCTGGAAGCATCACCTGCCAAAGCAGCTCCACCAAAGCAGCACATGGCGGACATTTCTGAAGAAAGAACTAGAGTTCCTGGGCgtgccattctggcctttattcccaatgacaaaagcgctgcctcctcctac #### Ms4a5_ID3161_4 --> 0 - 0 Original Alignment ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCA-GATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT tgacaaggaagcaggcaatcttagtcttatttgcttcggcctcctcacagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCACGATGGTATGCAGTGCGGTGTGATTACCATTCTATTCATTgtaagtaacctattctgttgtttaggactaagcagagttgataaaggggc Alignment from CESAR ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCA-GATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT tgacaaggaagcaggcaatcttagtcttatttgcttcggcctcctcacagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCACGATGGTATGCAGTGCGGTGTGATTACCATTCTATTCATTgtaagtaacctattctgttgtttaggactaagcagagttgataaaggggc Alignment from Spaln_aa2Genome ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCA-GATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT tgacaaggaagcaggcaatcttagtcttatttgcttcggcctcctcacagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCAcGATGGTATGCAGTGCGGTGTGATTACCATTCTATTCATTgtaagtaacctattctgttgtttaggactaagcagagttgataaaggggc Alignment from Spaln_nt2Genome ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCA-GATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT tgacaaggaagcaggcaatcttagtcttatttgcttcggcctcctcacagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCACGATGGTATGCAGTGCGGTGTGATTACCATTCTATTCATTgtaagtaacctattctgttgtttaggactaagcagagttgataaaggggc Alignment from Pairagon ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCA-GATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT tgacaaggaagcaggcaatcttagtcttatttgcttcggcctcctcacagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCACGATGGTATGCAGTGCGGTGTGATTACCATTCTATTCATTgtaagtaacctattctgttgtttaggactaagcagagttgataaaggggc Alignment from Exonerate_protein2genome ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCA-GATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT tgacaaggaagcaggcaatcttagtcttatttgcttcggcctcctcacagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCACGATGGTATGCAGTGCGGTGTGATTACCATTCTATTCATTgtaagtaacctattctgttgtttaggactaagcagagttgataaaggggc Alignment from Exonerate_coding2genome ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCA-GATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT tgacaaggaagcaggcaatcttagtcttatttgcttcggcctcctcacagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCACGATGGTATGCAGTGCGGTGTGATTACCATTCTATTCATTgtaagtaacctattctgttgtttaggactaagcagagttgataaaggggc Alignment from GeneWise ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCA-GATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT tgacaaggaagcaggcaatcttagtcttatttgcttcggcctcctcacagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAATTCATCTGTGGCTATTCTCCACGATGGTATGCAGTGCGGTGTGATTACCATTCTATTCATTgtaagtaacctattctgttgtttaggactaagcagagttgataaaggggc #### Mta2_ID2536_9 --> 0 - 0 Original Alignment TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGAT-TTCAATGATATCCGCCAGGACTTT gactgaaaagagagtagcaagccctcacactaactgtcattgcttttcagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTGGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCAGTTCTTTGTCGAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGAAAAGATCTTCAATGACATCCGCCAGGACTTCgtgagtgatcaagaccaagaagggaaagaacgatgaggagactgaaaaca Alignment from CESAR TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGAT-TTCAATGATATCCGCCAGGACTTT gactgaaaagagagtagcaagccctcacactaactgtcattgcttttcagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTGGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCAGTTCTTTGTCGAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGAAAAGATCTTCAATGACATCCGCCAGGACTTCgtgagtgatcaagaccaagaagggaaagaacgatgaggagactgaaaaca Alignment from Spaln_aa2Genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGAT-TTCAATGATATCCGCCAGGACTTT gactgaaaagagagtagcaagccctcacactaactgtcattgcttttcagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTGGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCAGTTCTTTGTCGAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGAAAAGATcTTCAATGACATCCGCCAGGACTTCgtgagtgatcaagaccaagaagggaaagaacgatgaggagactgaaaaca Alignment from Spaln_nt2Genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGAT-TTCAATGATATCCGCCAGGACTTT gactgaaaagagagtagcaagccctcacactaactgtcattgcttttcagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTGGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCAGTTCTTTGTCGAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGAAAAGATCTTCAATGACATCCGCCAGGACTTCgtgagtgatcaagaccaagaagggaaagaacgatgaggagactgaaaaca Alignment from Pairagon TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGAT-TTCAATGATATCCGCCAGGACTTT gactgaaaagagagtagcaagccctcacactaactgtcattgcttttcagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTGGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCAGTTCTTTGTCGAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGAAAAGATCTTCAATGACATCCGCCAGGACTTCgtgagtgatcaagaccaagaagggaaagaacgatgaggagactgaaaaca Alignment from Exonerate_protein2genome TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAGGAT-TTCAATGATATCCGCCAGGACTTT gactgaaaagagagtagcaagccctcacactaactgtcattgcttttcagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTGGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCAGTTCTTTGTCGAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGAAAAGATCTTCAATGACATCCGCCAGGACTTCgtgagtgatcaagaccaagaagggaaagaacgatgaggagactgaaaaca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TTCCATGCCATGGATACCTTGCAAAGGAATGGCTATGACTTGGCCAAGGCTATGTCAACCCTAGTACCACAGGGAGGCCCGGTGCTCTGTCGGGATGAGATGGAGGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAGGCTCTGGAGAAGTACGGGAAG-GATTTCAATGATATCCGCCAGGACTTT gactgaaaagagagtagcaagccctcacactaactgtcattgcttttcagTTTCATGCTATGGATACCTTGCAAAGGAATGGATATGACCTGGCCAAGGCTATGTCAACTCTAGTACCACAGGGAGGCCCAGTTCTTTGTCGAGATGAGATGGGAGAATGGTCTGCTTCTGAAGCCATGCTGTTTGAAGAAGCTTTGGAGAAGTATGGAAAAGATCTTCAATGACATCCGCCAGGACTTCgtgagtgatcaagaccaagaagggaaagaacgatgaggagactgaaaaca #### Mta2_ID2538_11 --> 0 - 2 Original Alignment AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAA-CTGAAACAGGTCTACATCCCCACTta tactgcccgagatgatttcaaatttagcataaacctttgggggttttcagAAAAGGCTAAAAGCTGCTGAAGCAGACAGCAAACCTGAAACAGGTGTATATCCCCACCtagtgagtctgccagcatcgcaaaaccagaacccctgattggccatggtgac Alignment from CESAR AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAA-CTGAAACAGGTCTACATCCCCACTta tactgcccgagatgatttcaaatttagcataaacctttgggggttttcagAAAAGGCTAAAAGCTGCTGAAGCAGACAGCAAACCTGAAACAGGTGTATATCCCCACCtagtgagtctgccagcatcgcaaaaccagaacccctgattggccatggtgac Alignment from Spaln_aa2Genome AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAA-CTGAAACAGGTCTACATCCCCACTTA tactgcccgagatgatttcaaatttagcataaacctttgggggttttcagAAAAGGCTAAAAGCTGCTGAAGCAGACAGCAAAcCTGAAACAGGTGTATATCCCCACCTAgtgagtctgccagcatcgcaaaaccagaacccctgattggccatggtgac Alignment from Spaln_nt2Genome AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAA-CTGAAACAGGTCTACATCCCCACTTA tactgcccgagatgatttcaaatttagcataaacctttgggggttttcagAAAAGGCTAAAAGCTGCTGAAGCAGACAGCAAACCTGAAACAGGTGTATATCCCCACCTAgtgagtctgccagcatcgcaaaaccagaacccctgattggccatggtgac Alignment from Pairagon AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAA-CTGAAACAGGTCTACATCCCCACTTA tactgcccgagatgatttcaaatttagcataaacctttgggggttttcagAAAAGGCTAAAAGCTGCTGAAGCAGACAGCAAACCTGAAACAGGTGTATATCCCCACCTAgtgagtctgccagcatcgcaaaaccagaacccctgattggccatggtgac Alignment from Exonerate_protein2genome AAAAGATTGAAAGCTGCTGAAGCAGACAGCAAA-CTGAAACAGGTCTACATCCCCACTTA tactgcccgagatgatttcaaatttagcataaacctttgggggttttcagAAAAGGCTAAAAGCTGCTGAAGCAGACAGCAAACCTGAAACAGGTGTATATCCCCACCTAgtgagtctgccagcatcgcaaaaccagaacccctgattggccatggtgac Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise tactgcccgagatgatttcaaatttagcataaacctttgggggttttcagaaaaggctaaaagctgctgaagcagacagcaaacctgaaacaggtgtatatccccacctagtgagtctgccagcatcgcaaaaccagaacccctgattggccatggtgac #### Mta2_ID2540_13 --> 2 - 0 Original Alignment ccACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGG-ATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tcaaggatcactgtagttcaataattccaactgtctccctctgtccaaagcaACACAGTCTGCACAGTGGTATGCCTGGGGACCACCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGCGTTTATTGGAAAACATATGGGGGCTTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGATCACGACGgtgagagtgagtgtgttggaaaccagcatgggaattgagcgaaaggggaa Alignment from CESAR ccACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGG-ATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tcaaggatcactgtagttcaataattccaactgtctccctctgtccaaagcaACACAGTCTGCACAGTGGTATGCCTGGGGACCACCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGCGTTTATTGGAAAACATATGGGGGCTTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGATCACGACGgtgagagtgagtgtgttggaaaccagcatgggaattgagcgaaaggggaa Alignment from Spaln_aa2Genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGG-ATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tcaaggatcactgtagttcaataattccaactgtctccctctgtccaaagCAACACAGTCTGCACAGTGGTATGCCTGGGGACCACCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGcGTTTATTGGAAAACATATGGGGGCTTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGATCACGACGgtgagagtgagtgtgttggaaaccagcatgggaattgagcgaaaggggaa Alignment from Spaln_nt2Genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGGA-TTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tcaaggatcactgtagttcaataattccaactgtctccctctgtccaaagCAACACAGTCTGCACAGTGGTATGCCTGGGGACCACCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGCGTTTATTGGAAAACATATGGGGGCTTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGATCACGACGgtgagagtgagtgtgttggaaaccagcatgggaattgagcgaaaggggaa Alignment from Pairagon CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGG-ATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tcaaggatcactgtagttcaataattccaactgtctccctctgtccaaagCAACACAGTCTGCACAGTGGTATGCCTGGGGACCACCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGCGTTTATTGGAAAACATATGGGGGCTTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGATCACGACGgtgagagtgagtgtgttggaaaccagcatgggaattgagcgaaaggggaa Alignment from Exonerate_protein2genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGG-ATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tcaaggatcactgtagttcaataattccaactgtctccctctgtccaaagCAACACAGTCTGCACAGTGGTATGCCTGGGGACCACCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGCGTTTATTGGAAAACATATGGGGGCTTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGATCACGACGgtgagagtgagtgtgttggaaaccagcatgggaattgagcgaaaggggaa Alignment from Exonerate_coding2genome CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGG-ATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tcaaggatcactgtagttcaataattccaactgtctccctctgtccaaagCAACACAGTCTGCACAGTGGTATGCCTGGGGACCACCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGCGTTTATTGGAAAACATATGGGGGCTTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGATCACGACGgtgagagtgagtgtgttggaaaccagcatgggaattgagcgaaaggggaa Alignment from GeneWise CCACACAGTCTGCCCAGTGGTATGCCTGGGGACCCCCTAACATGCAGTGCCGACTTTGTGCTTCCTGTTGG-ATTTATTGGAAGAAATACGGGGGACTGAAGACCCCTACCCAACTTGAAGGGGCTGCTCGGGGCACCACA tcaaggatcactgtagttcaataattccaactgtctccctctgtccaaagCAACACAGTCTGCACAGTGGTATGCCTGGGGACCACCTAACATGCAGTACCGACTTTGTGCTTCCTGTTGGCGTTTATTGGAAAACATATGGGGGCTTGAAGACCCCTACCCAACTAGAAGGAGCAGCTCGGATCACGACGgtgagagtgagtgtgttggaaaccagcatgggaattgagcgaaaggggaa #### Myof_ID7468_34 --> 0 - 0 Original Alignment GATGGCTCCAACCTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATAC-ATGGTCCCTCAGGGGATCAGGCCTGTGGTTCAGCTCACTGCCATTGAG tctgttttaatgaaagggaagaattgttacctgcctgttttctttttcagGATGGATCCAATCTTCCCATCCTTCCATCTCAGAGAGCACCAAACCTATACCATGGTCCCACAGGGGATCAGACCTGTGGTACAGCTCACTGCCATTGAAgtaaggatttgagaaccctcattaagctgtgcacatgcaggctgtaggac Alignment from CESAR GATGGCTCCAACCTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATAC-ATGGTCCCTCAGGGGATCAGGCCTGTGGTTCAGCTCACTGCCATTGAG tctgttttaatgaaagggaagaattgttacctgcctgttttctttttcagGATGGATCCAATCTTCCCATCCTTCCATCTCAGAGAGCACCAAACCTATACCATGGTCCCACAGGGGATCAGACCTGTGGTACAGCTCACTGCCATTGAAgtaaggatttgagaaccctcattaagctgtgcacatgcaggctgtaggac Alignment from Spaln_aa2Genome GATGGCTCCAACCTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATAC-ATGGTCCCTCAGGGGATCAGGCCTGTGGTTCAGCTCACTGCCATTGAG tctgttttaatgaaagggaagaattgttacctgcctgttttctttttcagGATGGATCCAATCTTCCCATCCTTCCATCTCAGAGAGCACCAAACCTATACcATGGTCCCACAGGGGATCAGACCTGTGGTACAGCTCACTGCCATTGAAgtaaggatttgagaaccctcattaagctgtgcacatgcaggctgtaggac Alignment from Spaln_nt2Genome GATGGCTCCAACCTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATA-CATGGTCCCTCAGGGGATCAGGCCTGTGGTTCAGCTCACTGCCATTGAG tctgttttaatgaaagggaagaattgttacctgcctgttttctttttcagGATGGATCCAATCTTCCCATCCTTCCATCTCAGAGAGCACCAAACCTATACCATGGTCCCACAGGGGATCAGACCTGTGGTACAGCTCACTGCCATTGAAgtaaggatttgagaaccctcattaagctgtgcacatgcaggctgtaggac Alignment from Pairagon GATGGCTCCAACCTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATA-CATGGTCCCTCAGGGGATCAGGCCTGTGGTTCAGCTCACTGCCATTGAG tctgttttaatgaaagggaagaattgttacctgcctgttttctttttcagGATGGATCCAATCTTCCCATCCTTCCATCTCAGAGAGCACCAAACCTATACCATGGTCCCACAGGGGATCAGACCTGTGGTACAGCTCACTGCCATTGAAgtaaggatttgagaaccctcattaagctgtgcacatgcaggctgtaggac Alignment from Exonerate_protein2genome GATGGCTCCAACCTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATAC-ATGGTCCCTCAGGGGATCAGGCCTGTGGTTCAGCTCACTGCCATTGAG tctgttttaatgaaagggaagaattgttacctgcctgttttctttttcagGATGGATCCAATCTTCCCATCCTTCCATCTCAGAGAGCACCAAACCTATACCATGGTCCCACAGGGGATCAGACCTGTGGTACAGCTCACTGCCATTGAAgtaaggatttgagaaccctcattaagctgtgcacatgcaggctgtaggac Alignment from Exonerate_coding2genome GATGGCTCCAACCTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATAC-ATGGTCCCTCAGGGGATCAGGCCTGTGGTTCAGCTCACTGCCATTGAG tctgttttaatgaaagggaagaattgttacctgcctgttttctttttcagGATGGATCCAATCTTCCCATCCTTCCATCTCAGAGAGCACCAAACCTATACCATGGTCCCACAGGGGATCAGACCTGTGGTACAGCTCACTGCCATTGAAgtaaggatttgagaaccctcattaagctgtgcacatgcaggctgtaggac Alignment from GeneWise GATGGCTCCAACCTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATAC-ATGGTCCCTCAGGGGATCAGGCCTGTGGTTCAGCTCACTGCCATTGAG tctgttttaatgaaagggaagaattgttacctgcctgttttctttttcagGATGGATCCAATCTTCCCATCCTTCCATCTCAGAGAGCACCAAACCTATACCATGGTCCCACAGGGGATCAGACCTGTGGTACAGCTCACTGCCATTGAAgtaaggatttgagaaccctcattaagctgtgcacatgcaggctgtaggac #### Myrf_ID2725_12 --> 0 - 0 Original Alignment GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAAC-ACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG cttcttaaatttaccctgtccccgaatagcctttgcccctctcttcctagGCCTCTAACCCGGGGCAGTTT---AGTGATAGTGATGTGCTATGGCAACGGGCACAACTGCCAGATACAGTTTTTCACCCTGGCCGTGTGGGTATTAACCACTGACCTGCCAGATGATGCATTAGTTGTCCATGGCAATGTAAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCGGGCCAAGGAGCATGTGCAGGAGgtaagtgctgtgacccatgggcgtcccctgcataactggattgtgggaag Alignment from CESAR GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAAC-ACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG cttcttaaatttaccctgtccccgaatagcctttgcccctctcttcctagGCCTCTAACCCGGGGCAGTTT---AGTGATAGTGATGTGCTATGGCAACGGGCACAACTGCCAGATACAGTTTTTCACCCTGGCCGTGTGGGTATTAACCACTGACCTGCCAGATGATGCATTAGTTGTCCATGGCAATGTAAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCGGGCCAAGGAGCATGTGCAGGAGgtaagtgctgtgacccatgggcgtcccctgcataactggattgtgggaag Alignment from Spaln_aa2Genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAAC-ACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG cttcttaaatttaccctgtccccgaatagcctttgcccctctcttcctagGCCTCTAACCCGGGGCAGTTT---AGTGATAGTGATGTGCTATGGCAACGGGCACAACTGCCAGATACAGTTTTTCACCCTGGCCGTGTGGGTATTAACcACTGACCTGCCAGATGATGCATTAGTTGTCCATGGCAATGTAAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCGGGCCAAGGAGCATGTGCAGGAGgtaagtgctgtgacccatgggcgtcccctgcataactggattgtgggaag Alignment from Spaln_nt2Genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAAC-ACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG cttcttaaatttaccctgtccccgaatagcctttgcccctctcttcctagGCCTCTAACCCGGGGCAGTTT---AGTGATAGTGATGTGCTATGGCAACGGGCACAACTGCCAGATACAGTTTTTCACCCTGGCCGTGTGGGTATTAACCACTGACCTGCCAGATGATGCATTAGTTGTCCATGGCAATGTAAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCGGGCCAAGGAGCATGTGCAGGAGgtaagtgctgtgacccatgggcgtcccctgcataactggattgtgggaag Alignment from Pairagon GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAA-CACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG cttcttaaatttaccctgtccccgaatagcctttgcccctctcttcctagGCCTCTAACCCGGGGCAGTTT---AGTGATAGTGATGTGCTATGGCAACGGGCACAACTGCCAGATACAGTTTTTCACCCTGGCCGTGTGGGTATTAACCACTGACCTGCCAGATGATGCATTAGTTGTCCATGGCAATGTAAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCGGGCCAAGGAGCATGTGCAGGAGgtaagtgctgtgacccatgggcgtcccctgcataactggattgtgggaag Alignment from Exonerate_protein2genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAAC-ACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG cttcttaaatttaccctgtccccgaatagcctttgcccctctcttcctagGCCTCTAACCCGGGGCAGTTT---AGTGATAGTGATGTGCTATGGCAACGGGCACAACTGCCAGATACAGTTTTTCACCCTGGCCGTGTGGGTATTAACCACTGACCTGCCAGATGATGCATTAGTTGTCCATGGCAATGTAAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCGGGCCAAGGAGCATGTGCAGGAGgtaagtgctgtgacccatgggcgtcccctgcataactggattgtgggaag Alignment from Exonerate_coding2genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAAC-ACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG cttcttaaatttaccctgtccccgaatagcctttgcccctctcttcctagGCCTCTAACCCGGGGCAGTTT---AGTGATAGTGATGTGCTATGGCAACGGGCACAACTGCCAGATACAGTTTTTCACCCTGGCCGTGTGGGTATTAACCACTGACCTGCCAGATGATGCATTAGTTGTCCATGGCAATGTAAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCGGGCCAAGGAGCATGTGCAGGAGgtaagtgctgtgacccatgggcgtcccctgcataactggattgtgggaag Alignment from GeneWise GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAAC-ACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAACGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG cttcttaaatttaccctgtccccgaatagcctttgcccctctcttcctagGCCTCTAACCCGGGGCAGTTT---AGTGATAGTGATGTGCTATGGCAACGGGCACAACTGCCAGATACAGTTTTTCACCCTGGCCGTGTGGGTATTAACCACTGACCTGCCAGATGATGCATTAGTTGTCCATGGCAATGTAAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCGGGCCAAGGAGCATGTGCAGGAGgtaagtgctgtgacccatgggcgtcccctgcataactggattgtgggaag #### Naa40_ID2073_7 --> 1 - 2 Original Alignment cACACAGATGAAG-AAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGca aaagagcactggctatgtctctagagtgtttctttgtttttccttttaagcACACAGAGAAAGCAAAGTTATGTTAACTGTGTTTAAACACAATCATGGTGCCTACCAGTTCTTCCATGAGACACTTcagtaagcaacaaggactcaggctaggggtcaaaatgtagttaggaggccca Alignment from CESAR cACACAGATGAAG-AAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGca aaagagcactggctatgtctctagagtgtttctttgtttttccttttaagcACACAGAGAAAGCAAAGTTATGTTAACTGTGTTTAAACACAATCATGGTGCCTACCAGTTCTTCCATGAGACACTTcagtaagcaacaaggactcaggctaggggtcaaaatgtagttaggaggccca Alignment from Spaln_aa2Genome CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGCA aaagagcactggctatgtctctagagtgtttctttgtttttccttttaagcacacagAGAA------AGCAAAGTTATGTTAACTGTGTTTAAACACAATCATGGTGCCTACCAGTTCTTCCATGAGACACTTCAgtaagcaacaaggactcaggctaggggtcaaaatgtagttaggaggccca Alignment from Spaln_nt2Genome CACACAGATGAAG-AAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGCA aaagagcactggctatgtctctagagtgtttctttgtttttccttttaagCACACAGAGAAAGCAAAGTTATGTTAACTGTGTTTAAACACAATCATGGTGCCTACCAGTTCTTCCATGAGACACTTCAgtaagcaacaaggactcaggctaggggtcaaaatgtagttaggaggccca Alignment from Pairagon CACACAGATGAAG-AAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGCA aaagagcactggctatgtctctagagtgtttctttgtttttccttttaagCACACAGAGAAAGCAAAGTTATGTTAACTGTGTTTAAACACAATCATGGTGCCTACCAGTTCTTCCATGAGACACTTCAgtaagcaacaaggactcaggctaggggtcaaaatgtagttaggaggccca Alignment from Exonerate_protein2genome CACACAGATGAAG-AAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGCA aaagagcactggctatgtctctagagtgtttctttgtttttccttttaagCACACAGAGAAAGCAAAGTTATGTTAACTGTGTTTAAACACAATCATGGTGCCTACCAGTTCTTCCATGAGACACTTCAgtaagcaacaaggactcaggctaggggtcaaaatgtagttaggaggccca Alignment from Exonerate_coding2genome aaagagcactggctatgtctctagagtgtttctttgtttttccttttaagcacacagagaaagcaaagttatgttaactgtgtttaaacacaatcatggtgcctaccagttcttccatgagacacttcagtaagcaacaaggactcaggctaggggtcaaaatgtagttaggaggccca Alignment from GeneWise CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGCGCCTATCAGTTCTTCCGAGAGGCACTGCA aaagagcactggctatgtctctagagtgtttctttgtttttccttttaagcacacagAGAAAGC------AAAGTTATGTTAACTGTGTTTAAACACAATCATGGTGCCTACCAGTTCTTCCATGAGACACTTCAgtaagcaacaaggactcaggctaggggtcaaaatgtagttaggaggccca #### Naa40_ID2074_6 --> 1 - 2 Original Alignment cTATGAAGTGCAGCTGGAA-AGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACag taagcccctctatggggtcaaagccctcgtatgtgtgttttgtgtttcagcTATGAAGTACAGCTGGAACAGCAAGGTAAGGCAGAAAGGTCTAGAGAAGTTTCTCATTCAGATTCTCCAGCTCATGGCCAACaggtgcgaagtatcttgccggaattggcttgctgggagaggttggtcctaag Alignment from CESAR cTATGAAGTGCAGCTGGAA-AGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACag taagcccctctatggggtcaaagccctcgtatgtgtgttttgtgtttcagcTATGAAGTACAGCTGGAACAGCAAGGTAAGGCAGAAAGGTCTAGAGAAGTTTCTCATTCAGATTCTCCAGCTCATGGCCAACaggtgcgaagtatcttgccggaattggcttgctgggagaggttggtcctaag Alignment from Spaln_aa2Genome CTATGAAGTGCAGCTGGAA-AGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG taagcccctctatggggtcaaagccctcgtatgtgtgttttgtgtttcagCTATGAAGTACAGCTGGAAcAGCAAGGTAAGGCAGAAAGGTCTAGAGAAGTTTCTCATTCAGATTCTCCAGCTCATGGCCAACAGgtgcgaagtatcttgccggaattggcttgctgggagaggttggtcctaag Alignment from Spaln_nt2Genome CTATGAAGTGCAGCTGGAA-AGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG taagcccctctatggggtcaaagccctcgtatgtgtgttttgtgtttcagCTATGAAGTACAGCTGGAACAGCAAGGTAAGGCAGAAAGGTCTAGAGAAGTTTCTCATTCAGATTCTCCAGCTCATGGCCAACAGgtgcgaagtatcttgccggaattggcttgctgggagaggttggtcctaag Alignment from Pairagon CTATGAAGTGCAGCTGGAA-AGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG taagcccctctatggggtcaaagccctcgtatgtgtgttttgtgtttcagCTATGAAGTACAGCTGGAACAGCAAGGTAAGGCAGAAAGGTCTAGAGAAGTTTCTCATTCAGATTCTCCAGCTCATGGCCAACAGgtgcgaagtatcttgccggaattggcttgctgggagaggttggtcctaag Alignment from Exonerate_protein2genome CTATGAAGTGCAGCTGGAA-AGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG taagcccctctatggggtcaaagccctcgtatgtgtgttttgtgtttcagCTATGAAGTACAGCTGGAACAGCAAGGTAAGGCAGAAAGGTCTAGAGAAGTTTCTCATTCAGATTCTCCAGCTCATGGCCAACAGgtgcgaagtatcttgccggaattggcttgctgggagaggttggtcctaag Alignment from Exonerate_coding2genome CTATGAAGTGCAGCTGGAA-AGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG taagcccctctatggggtcaaagccctcgtatgtgtgttttgtgtttcagCTATGAAGTACAGCTGGAACAGCAAGGTAAGGCAGAAAGGTCTAGAGAAGTTTCTCATTCAGATTCTCCAGCTCATGGCCAACAGgtgcgaagtatcttgccggaattggcttgctgggagaggttggtcctaag Alignment from GeneWise CTATGAAGTGCAGCTGGAA-AGCAAGGTACGGCGGAAAGGCCTAGGGAAGTTCCTCATTCAGATCCTGCAGCTCATGGCCAACAG taagcccctctatggggtcaaagccctcgtatgtgtgttttgtgtttcagCTATGAAGTACAGCTGGAACAGCAAGGTAAGGCAGAAAGGTCTAGAGAAGTTTCTCATTCAGATTCTCCAGCTCATGGCCAACAGgtgcgaagtatcttgccggaattggcttgctgggagaggttggtcctaag #### Naaladl1_ID1447_6 --> 1 - 2 Original Alignment tAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGA-CCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGag aattgaaggtaatgagacatcctgcccttgtgtgcctgtctcctcctcagtAACCTCACAGGAACCTCTGCCCCTACTTTCTGGCAGAGAGCCCTAGGCTGTGAATACAAACTAGGACCCTGGATTTGAGCCAAATGAAAGTTTCCCCGATGGAaggtaagacaggacatgtgaatctaagtccccttgaaggggccccagaattt Alignment from CESAR tAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCC-GGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGag aattgaaggtaatgagacatcctgcccttgtgtgcctgtctcctcctcagtAACCTCACAGGAACCTCTGCCCCTACTTTCTGGCAGAGAGCCCTAGGCTGTGAATACAAACTAGGACCCTGGATTTGAGCCAAATGAAAGTTTCCCCGATGGAaggtaagacaggacatgtgaatctaagtccccttgaaggggccccagaattt Alignment from Spaln_aa2Genome TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCC-GGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgaaggtaatgagacatcctgcccttgtgtgcctgtctcctcctcagTAACCTCACAGGAACCTCTGCCCCTACTTTCTGGCAGAGAGCCCTAGGCTGTGAATACAAACTAGGACCCtGGATTTGAGCCAAATGAAAGTTTCCCCGATGGAAGgtaagacaggacatgtgaatctaagtccccttgaaggggccccagaattt Alignment from Spaln_nt2Genome TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCC-GGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgaaggtaatgagacatcctgcccttgtgtgcctgtctcctcctcagTAACCTCACAGGAACCTCTGCCCCTACTTTCTGGCAGAGAGCCCTAGGCTGTGAATACAAACTAGGACCCTGGATTTGAGCCAAATGAAAGTTTCCCCGATGGAAGgtaagacaggacatgtgaatctaagtccccttgaaggggccccagaattt Alignment from Pairagon TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCC-GGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgaaggtaatgagacatcctgcccttgtgtgcctgtctcctcctcagTAACCTCACAGGAACCTCTGCCCCTACTTTCTGGCAGAGAGCCCTAGGCTGTGAATACAAACTAGGACCCTGGATTTGAGCCAAATGAAAGTTTCCCCGATGGAAGgtaagacaggacatgtgaatctaagtccccttgaaggggccccagaattt Alignment from Exonerate_protein2genome TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGA-CCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgaaggtaatgagacatcctgcccttgtgtgcctgtctcctcctcagTAACCTCACAGGAACCTCTGCCCCTACTTTCTGGCAGAGAGCCCTAGGCTGTGAATACAAACTAGGACCCTGGATTTGAGCCAAATGAAAGTTTCCCCGATGGAAGgtaagacaggacatgtgaatctaagtccccttgaaggggccccagaattt Alignment from Exonerate_coding2genome TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGA-CCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgaaggtaatgagacatcctgcccttgtgtgcctgtctcctcctcagTAACCTCACAGGAACCTCTGCCCCTACTTTCTGGCAGAGAGCCCTAGGCTGTGAATACAAACTAGGACCCTGGATTTGAGCCAAATGAAAGTTTCCCCGATGGAAGgtaagacaggacatgtgaatctaagtccccttgaaggggccccagaattt Alignment from GeneWise TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAGGGGGCCCTGGGCTGTGAGTACAAGCTG-GGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgaaggtaatgagacatcctgcccttgtgtgcctgtctcctcctcagTAACCTCACAGGAACCTCTGCCCCTACTTTCTGGCAGAGAGCCCTAGGCTGTGAATACAAACTAGGACCCTGGATTTGAGCCAAATGAAAGTTTCCCCGATGGAAGgtaagacaggacatgtgaatctaagtccccttgaaggggccccagaattt #### Naaladl1_ID1452_11 --> 2 - 0 Original Alignment ccAATGCTACCCTCCGGGCA-CAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggtgatgcgttagcagccaacagtttttttcttttttgactctagcaAATACTACTCTGCAGGCCCCAGGGAGCACCACCTGTACAAGGTGTGCTCTTTTCTTCGACCAAAGATgtaagtaggtgatcttcaaaggagtaaggtcggaccacaccatctcgggc Alignment from CESAR ccAATGCTACCCTCCGGGCA-CAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggtgatgcgttagcagccaacagtttttttcttttttgactctagcaAATACTACTCTGCAGGCCCCAGGGAGCACCACCTGTACAAGGTGTGCTCTTTTCTTCGACCAAAGATgtaagtaggtgatcttcaaaggagtaaggtcggaccacaccatctcgggc Alignment from Spaln_aa2Genome GGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggtgatgcgttagcagccaacagtttttttcttttttgactctagcaaatactactctgcagGCCCCAGGGAGCACCACCTGTACAAGGTGTGCTCTTTTCTTCGACCAAAGATgtaagtaggtgatcttcaaaggagtaaggtcggaccacaccatctcgggc Alignment from Spaln_nt2Genome CCAATGCTACCCTCCGGGCAC-AGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggtgatgcgttagcagccaacagtttttttcttttttgactctagCAAATACTACTCTGCAGGCCCCAGGGAGCACCACCTGTACAAGGTGTGCTCTTTTCTTCGACCAAAGATgtaagtaggtgatcttcaaaggagtaaggtcggaccacaccatctcgggc Alignment from Pairagon CCAATGCTACCCTCCGGG-CACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggtgatgcgttagcagccaacagtttttttcttttttgactctagCAAATACTACTCTGCAGGCCCCAGGGAGCACCACCTGTACAAGGTGTGCTCTTTTCTTCGACCAAAGATgtaagtaggtgatcttcaaaggagtaaggtcggaccacaccatctcgggc Alignment from Exonerate_protein2genome CCAATGCTACCCTCCGGGCA-CAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggtgatgcgttagcagccaacagtttttttcttttttgactctagCAAATACTACTCTGCAGGCCCCAGGGAGCACCACCTGTACAAGGTGTGCTCTTTTCTTCGACCAAAGATgtaagtaggtgatcttcaaaggagtaaggtcggaccacaccatctcgggc Alignment from Exonerate_coding2genome CCAATGCTACCCTCCGGGCA-CAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggtgatgcgttagcagccaacagtttttttcttttttgactctagCAAATACTACTCTGCAGGCCCCAGGGAGCACCACCTGTACAAGGTGTGCTCTTTTCTTCGACCAAAGATgtaagtaggtgatcttcaaaggagtaaggtcggaccacaccatctcgggc Alignment from GeneWise GGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAG gggaaggtgatgcgttagcagccaacagtttttttcttttttgactctagcaaatactactctgcagGCCCCAGGGAGCACCACCTGTACAAGGTGTGCTCTTTTCTTCGACCAAAGATgtaagtaggtgatcttcaaaggagtaaggtcggaccacaccatctcgggc #### Naaladl1_ID1453_12 --> 0 - 2 Original Alignment ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATAT-ACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCag ggtttgctaatcactcatcagggtgtcaagcttgggccatccctttacagATCAGTGCACCAGGATCCAGTGGTCTCAGGATCTATGATAATTGGATCCGATATCACTAACCGTGCCAGCCCAGTATATGGGCTGGTCCCCaggtaggttcagattgaggtcaggtgggcctgtttgcacagcatgtccgcta Alignment from CESAR ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATAT-ACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCag ggtttgctaatcactcatcagggtgtcaagcttgggccatccctttacagATCAGTGCACCAGGATCCAGTGGTCTCAGGATCTATGATAATTGGATCCGATATCACTAACCGTGCCAGCCCAGTATATGGGCTGGTCCCCaggtaggttcagattgaggtcaggtgggcctgtttgcacagcatgtccgcca Alignment from Spaln_aa2Genome ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATAT-ACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG ggtttgctaatcactcatcagggtgtcaagcttgggccatccctttacagATCAGTGCACCAGGATCCAGTGGTCTCAGGATCTATGATAATTGGATCCGATATcACTAACCGTGCCAGCCCAGTATATGGGCTGGTCCCCAGgtaggttcagattgaggtcaggtgggcctgtttgcacagcatgtccgcta Alignment from Spaln_nt2Genome ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATAT-ACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG ggtttgctaatcactcatcagggtgtcaagcttgggccatccctttacagATCAGTGCACCAGGATCCAGTGGTCTCAGGATCTATGATAATTGGATCCGATATCACTAACCGTGCCAGCCCAGTATATGGGCTGGTCCCCAGgtaggttcagattgaggtcaggtgggcctgtttgcacagcatgtccgcta Alignment from Pairagon ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATAT-ACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG ggtttgctaatcactcatcagggtgtcaagcttgggccatccctttacagATCAGTGCACCAGGATCCAGTGGTCTCAGGATCTATGATAATTGGATCCGATATCACTAACCGTGCCAGCCCAGTATATGGGCTGGTCCCCAGgtaggttcagattgaggtcaggtgggcctgtttgcacagcatgtccgcta Alignment from Exonerate_protein2genome ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATAT-ACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG ggtttgctaatcactcatcagggtgtcaagcttgggccatccctttacagATCAGTGCACCAGGATCCAGTGGTCTCAGGATCTATGATAATTGGATCCGATATCACTAACCGTGCCAGCCCAGTATATGGGCTGGTCCCCAGgtaggttcagattgaggtcaggtgggcctgtttgcacagcatgtccgcta Alignment from Exonerate_coding2genome ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATAT-ACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG ggtttgctaatcactcatcagggtgtcaagcttgggccatccctttacagATCAGTGCACCAGGATCCAGTGGTCTCAGGATCTATGATAATTGGATCCGATATCACTAACCGTGCCAGCCCAGTATATGGGCTGGTCCCCAGgtaggttcagattgaggtcaggtgggcctgtttgcacagcatgtccgcta Alignment from GeneWise ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGATAT-ACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG ggtttgctaatcactcatcagggtgtcaagcttgggccatccctttacagATCAGTGCACCAGGATCCAGTGGTCTCAGGATCTATGATAATTGGATCCGATATCACTAACCGTGCCAGCCCAGTATATGGGCTGGTCCCCAGgtaggttcagattgaggtcaggtgggcctgtttgcacagcatgtccgcta #### Naaladl1_ID1456_15 --> 2 - 1 Original Alignment gtTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTA-CAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGg gg ggcataagggtgggacttggatgtaccttttttctgtcatcctttggtaggtTTTAGCAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACCAAGGTTTCCTTCAGGCGGCTCAAGAGGCCCTGGGCACCCAGTTAGAAAAGCAGAATGTTAGCTTGggtaagacacagaatcctgaggcagtgatatgtttttgtgttttcgcaggg Alignment from CESAR gtTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTA-CAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGg gg ggcataagggtgggacttggatgtaccttttttctgtcatcctttggtaggtTTTAGCAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACCAAGGTTTCCTTCAGGCGGCTCAAGAGGCCCTGGGCACCCAGTTAGAAAAGCAGAATGTTAGCTTGggtaagacacagaatcctgaggcagtgctaccatatctcccttctgcaggg Alignment from Spaln_aa2Genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTA-CAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GG ggcataagggtgggacttggatgtaccttttttctgtcatcctttggtagGTTTTAGCAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTAcCAAGGTTTCCTTCAGGCGGCTCAAGAGGCCCTGGGCACCCAGTTAGAAAAGCAGAATGTTAGCTTGGgtaagacacagaatcctgaggcagtgatatgtttttgtgttttcgcagGG Alignment from Spaln_nt2Genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAG-TTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GG ggcataagggtgggacttggatgtaccttttttctgtcatcctttggtagGTTTTAGCAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACCAAGGTTTCCTTCAGGCGGCTCAAGAGGCCCTGGGCACCCAGTTAGAAAAGCAGAATGTTAGCTTGGgtaagacacagaatcctgaggcagtgatatgtttttgtgttttcgcagGG Alignment from Pairagon GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTA-CAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GG ggcataagggtgggacttggatgtaccttttttctgtcatcctttggtagGTTTTAGCAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACCAAGGTTTCCTTCAGGCGGCTCAAGAGGCCCTGGGCACCCAGTTAGAAAAGCAGAATGTTAGCTTGGgtaagacacagaatcctgaggcagtgatatgtttttgtgttttcgcagGG Alignment from Exonerate_protein2genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTA-CAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GG ggcataagggtgggacttggatgtaccttttttctgtcatcctttggtagGTTTTAGCAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACCAAGGTTTCCTTCAGGCGGCTCAAGAGGCCCTGGGCACCCAGTTAGAAAAGCAGAATGTTAGCTTGGgtaagacacagaatcctgaggcagtgatatgtttttgtgttttcgcagGG Alignment from Exonerate_coding2genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTA-CAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GG ggcataagggtgggacttggatgtaccttttttctgtcatcctttggtagGTTTTAGCAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACCAAGGTTTCCTTCAGGCGGCTCAAGAGGCCCTGGGCACCCAGTTAGAAAAGCAGAATGTTAGCTTGGgtaagacacagaatcctgaggcagtgatatgtttttgtgttttcgcagGG Alignment from GeneWise GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTCCTGCCCCTCAATGTCAGTGACTATAGTGAGACA-CTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTG------------------------------------------------GGG ggcataagggtgggacttggatgtaccttttttctgtcatcctttggtagGTTTTAGCAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCGGCTCAGTGATAGCCTCTTCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACCAAGGTTTCCTTCAGGCGGCTCAAGAGGCCCTGGGCACCCAGTTAGAAAAGCAGAATGTTAGCTTGGGTAAGACACAGAATCCTGAGGCAGTGATATGTTTTTGTGTTTTCGCAGGG #### Naaladl1_ID1458_17 --> 1 - 2 Original Alignment tCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTG-AACCCAAGGGCTTTCCCAGAGGAGAGGCACTACag tacctgagctaggtgctggctgtcagtgtgcccatgtcgtctcttggcagtCCTCTGCAGGTTCAAATGGTTAATGACCAACTGATGCTCTTAGAGTGTGCATTTTTGCAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACaggtgagtctatgcttaaacaaataagttgcttaggcccaggcttaggccca Alignment from CESAR tCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTG-AACCCAAGGGCTTTCCCAGAGGAGAGGCACTACag tacctgagctaggtgctggctgtcagtgtgcccatgtcgtctcttggcagtCCTCTGCAGGTTCAAATGGTTAATGACCAACTGATGCTCTTAGAGTGTGCATTTTTGCAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACaggtgagtctatgcttaaacaaataagttgcttaggcccaggcttaggccca Alignment from Spaln_aa2Genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTG-AACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG tacctgagctaggtgctggctgtcagtgtgcccatgtcgtctcttggcagTCCTCTGCAGGTTCAAATGGTTAATGACCAACTGATGCTCTTAGAGTGTGCATTTTTGcAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAGgtgagtctatgcttaaacaaataagttgcttaggcccaggcttaggccca Alignment from Spaln_nt2Genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTG-AACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG tacctgagctaggtgctggctgtcagtgtgcccatgtcgtctcttggcagTCCTCTGCAGGTTCAAATGGTTAATGACCAACTGATGCTCTTAGAGTGTGCATTTTTGCAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAGgtgagtctatgcttaaacaaataagttgcttaggcccaggcttaggccca Alignment from Pairagon TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTG-AACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG tacctgagctaggtgctggctgtcagtgtgcccatgtcgtctcttggcagTCCTCTGCAGGTTCAAATGGTTAATGACCAACTGATGCTCTTAGAGTGTGCATTTTTGCAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAGgtgagtctatgcttaaacaaataagttgcttaggcccaggcttaggccca Alignment from Exonerate_protein2genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTG-AACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG tacctgagctaggtgctggctgtcagtgtgcccatgtcgtctcttggcagTCCTCTGCAGGTTCAAATGGTTAATGACCAACTGATGCTCTTAGAGTGTGCATTTTTGCAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAGgtgagtctatgcttaaacaaataagttgcttaggcccaggcttaggccca Alignment from Exonerate_coding2genome TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTCCTG-AACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG tacctgagctaggtgctggctgtcagtgtgcccatgtcgtctcttggcagTCCTCTGCAGGTTCAAATGGTTAATGACCAACTGATGCTCTTAGAGTGTGCATTTTTGCAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAGgtgagtctatgcttaaacaaataagttgcttaggcccaggcttaggccca Alignment from GeneWise TCCTCTGCAGGTACGAATGGTCAATGACCAGCTGATGCTCTTAGAACGGGCATTC-CTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG tacctgagctaggtgctggctgtcagtgtgcccatgtcgtctcttggcagTCCTCTGCAGGTTCAAATGGTTAATGACCAACTGATGCTCTTAGAGTGTGCATTTTTGCAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAGgtgagtctatgcttaaacaaataagttgcttaggcccaggcttaggccca #### Ndufv1_ID273_9 --> 2 - 0 Original Alignment gcGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTG-TGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctctgtgtcaaacttggactgtctttcagggGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGCGATGCCTGTCCAGCTGAGATTGATTCTCTGCTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaaggagcatcttcctctaccatcctctattacaggaggggctgggcac Alignment from CESAR gcGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTG-TGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctctgtgtcaaacttggactgtctttcagggGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGCGATGCCTGTCCAGCTGAGATTGATTCTCTGCTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaaggagcatcttcctctaccatcctctattacaggaggggctgggcac Alignment from Spaln_aa2Genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTG-TGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctctgtgtcaaacttggactgtctttcagGGGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGCGATGCCTGTCCAGCTGAGATTGATTCTCTGcTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaaggagcatcttcctctaccatcctctattacaggaggggctgggcac Alignment from Spaln_nt2Genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTG-TGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctctgtgtcaaacttggactgtctttcagGGGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGCGATGCCTGTCCAGCTGAGATTGATTCTCTGCTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaaggagcatcttcctctaccatcctctattacaggaggggctgggcac Alignment from Pairagon GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTG-TGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctctgtgtcaaacttggactgtctttcagGGGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGCGATGCCTGTCCAGCTGAGATTGATTCTCTGCTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaaggagcatcttcctctaccatcctctattacaggaggggctgggcac Alignment from Exonerate_protein2genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTG-TGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctctgtgtcaaacttggactgtctttcagGGGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGCGATGCCTGTCCAGCTGAGATTGATTCTCTGCTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaaggagcatcttcctctaccatcctctattacaggaggggctgggcac Alignment from Exonerate_coding2genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTG-TGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctctgtgtcaaacttggactgtctttcagGGGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGCGATGCCTGTCCAGCTGAGATTGATTCTCTGCTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaaggagcatcttcctctaccatcctctattacaggaggggctgggcac Alignment from GeneWise GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCC-CTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGTGCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctctgtgtcaaacttggactgtctttcagGGGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGCGATGCCTGTCCAGCTGAGATTGATTCTCTGCTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgtaaggagcatcttcctctaccatcctctattacaggaggggctgggcac #### Ndufv1_ID276_6 --> 2 - 1 Original Alignment gaGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCA-GGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTg gacagtgtttaatcacgccctagttaatttgctgactcttgattccgcaggaGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACAGTGGCTGTGTCCCCCACCATTTGTCGCCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACACAATTCACGGCACCAAATTGTTCAACATCTTTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCCGTCCCCCTCAAAGAGCTGATTGAGAAACATACTggtaaggctgaagccaactcaagatcagggcatcagagggggccttgtaaa Alignment from CESAR gaGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCA-GGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTg gacagtgtttaatcacgccctagttaatttgctgactcttgattccgcaggaGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACAGTGGCTGTGTCCCCCACCATTTGTCGCCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACACAATTCACGGCACCAAATTGTTCAACATCTTTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCCGTCCCCCTCAAAGAGCTGATTGAGAAACATACTggtaaggctgaagccaactcaagatcagggcatcagagggggccttgtaaa Alignment from Spaln_aa2Genome GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCA-GGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gacagtgtttaatcacgccctagttaatttgctgactcttgattccgcagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACAGTGGCTGTGTCCCCCACCATTTGTCGCCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACACAATTCAcGGCACCAAATTGTTCAACATCTTTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCCGTCCCCCTCAAAGAGCTGATTGAGAAACATACTGgtaaggctgaagccaactcaagatcagggcatcagagggggccttgtaaa Alignment from Spaln_nt2Genome GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCA-GGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gacagtgtttaatcacgccctagttaatttgctgactcttgattccgcagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACAGTGGCTGTGTCCCCCACCATTTGTCGCCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACACAATTCACGGCACCAAATTGTTCAACATCTTTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCCGTCCCCCTCAAAGAGCTGATTGAGAAACATACTGgtaaggctgaagccaactcaagatcagggcatcagagggggccttgtaaa Alignment from Pairagon GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCA-GGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gacagtgtttaatcacgccctagttaatttgctgactcttgattccgcagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACAGTGGCTGTGTCCCCCACCATTTGTCGCCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACACAATTCACGGCACCAAATTGTTCAACATCTTTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCCGTCCCCCTCAAAGAGCTGATTGAGAAACATACTGgtaaggctgaagccaactcaagatcagggcatcagagggggccttgtaaa Alignment from Exonerate_protein2genome GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCA-GGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gacagtgtttaatcacgccctagttaatttgctgactcttgattccgcagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACAGTGGCTGTGTCCCCCACCATTTGTCGCCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACACAATTCACGGCACCAAATTGTTCAACATCTTTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCCGTCCCCCTCAAAGAGCTGATTGAGAAACATACTGgtaaggctgaagccaactcaagatcagggcatcagagggggccttgtaaa Alignment from Exonerate_coding2genome GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAATTCA-GGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gacagtgtttaatcacgccctagttaatttgctgactcttgattccgcagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACAGTGGCTGTGTCCCCCACCATTTGTCGCCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACACAATTCACGGCACCAAATTGTTCAACATCTTTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCCGTCCCCCTCAAAGAGCTGATTGAGAAACATACTGgtaaggctgaagccaactcaagatcagggcatcagagggggccttgtaaa Alignment from GeneWise GAGTGTTTGGATGCCCCACAACTGTGGCCAATGTGGAGACAGTGGCTGTGTCCCCCACCATTTGCCGTCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACGCAAT-TCAGGTACCAAATTGTTTAACATCTCTGGCCATGTCAACCACCCCTGCACTGTGGAGGAAGAGATGTCTGTGCCACTGAAAGAGCTGATTGAGAAACATGCTG gacagtgtttaatcacgccctagttaatttgctgactcttgattccgcagGAGTGTTTGGCTGCCCCACAACTGTGGCCAATGTGAAGACAGTGGCTGTGTCCCCCACCATTTGTCGCCGTGGGGGCACCTGGTTTGCTGGCTTTGGCCGAGAACACAATTCACGGCACCAAATTGTTCAACATCTTTGGCCATGTCAACCACCCATGCACTGTGGAGGAAGAGATGTCCGTCCCCCTCAAAGAGCTGATTGAGAAACATACTGgtaaggctgaagccaactcaagatcagggcatcagagggggccttgtaaa #### Ndufv1_ID280_2 --> 0 - 2 Original Alignment ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAACCTGTAT-GGGCGCCATGACTGGag gtgccgactgccactctcatggttgctaaccagcggcctgtctctgccagACAGCACCCAAGAAAACCTCATTTGGCTCAGTGAAGGATGATGACCGTATTTTTACCAATCTCTATCGGGCGCCATGACTGGaggtaaggcaaagccatgacctcggcacgaactagggccctttgtttattct Alignment from CESAR ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAACCTGTAT-GGGCGCCATGACTGGag gtgccgactgccactctcatggttgctaaccagcggcctgtctctgccagACAGCACCCAAGAAAACCTCATTTGGCTCAGTGAAGGATGATGACCGTATTTTTACCAATCTCTATCGGGCGCCATGACTGGaggtaaggcaaagccatgacctcggcacgaactatcccacatgatcccaatg Alignment from Spaln_aa2Genome ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAACCTGTAT-GGGCGCCATGACTGGAG gtgccgactgccactctcatggttgctaaccagcggcctgtctctgccagACAGCACCCAAGAAAACCTCATTTGGCTCAGTGAAGGATGATGACCGTATTTTTACCAATCTCTATcGGGCGCCATGACTGGAGgtaaggcaaagccatgacctcggcacgaactagggccctttgtttattct Alignment from Spaln_nt2Genome ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAACCTGTAT-GGGCGCCATGACTGGAG gtgccgactgccactctcatggttgctaaccagcggcctgtctctgccagACAGCACCCAAGAAAACCTCATTTGGCTCAGTGAAGGATGATGACCGTATTTTTACCAATCTCTATCGGGCGCCATGACTGGAGgtaaggcaaagccatgacctcggcacgaactagggccctttgtttattct Alignment from Pairagon ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAACCTGTAT-GGGCGCCATGACTGGAG gtgccgactgccactctcatggttgctaaccagcggcctgtctctgccagACAGCACCCAAGAAAACCTCATTTGGCTCAGTGAAGGATGATGACCGTATTTTTACCAATCTCTATCGGGCGCCATGACTGGAGgtaaggcaaagccatgacctcggcacgaactagggccctttgtttattct Alignment from Exonerate_protein2genome ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAACCTGTAT-GGGCGCCATGACTGGAG gtgccgactgccactctcatggttgctaaccagcggcctgtctctgccagACAGCACCCAAGAAAACCTCATTTGGCTCAGTGAAGGATGATGACCGTATTTTTACCAATCTCTATCGGGCGCCATGACTGGAGgtaaggcaaagccatgacctcggcacgaactagggccctttgtttattct Alignment from Exonerate_coding2genome ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAACCTGTAT-GGGCGCCATGACTGGAG gtgccgactgccactctcatggttgctaaccagcggcctgtctctgccagACAGCACCCAAGAAAACCTCATTTGGCTCAGTGAAGGATGATGACCGTATTTTTACCAATCTCTATCGGGCGCCATGACTGGAGgtaaggcaaagccatgacctcggcacgaactagggccctttgtttattct Alignment from GeneWise ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAACCTGTAT-GGGCGCCATGACTGGAG gtgccgactgccactctcatggttgctaaccagcggcctgtctctgccagACAGCACCCAAGAAAACCTCATTTGGCTCAGTGAAGGATGATGACCGTATTTTTACCAATCTCTATCGGGCGCCATGACTGGAGgtaaggcaaagccatgacctcggcacgaactagggccctttgtttattct #### Nfkb2_ID9824_2 --> 0 - 1 Original Alignment GGCCTGGATGGCATCCCCGAATATGATGATTTTGAA-TTCAGCCCCTCCATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAg cattaattggtcccttgatacagctaccacggctgcgtcattgtctctagGGGCTGGATGGAATCCCAGATTATGAGGATTTTGAACTTCAGCCCAACAATAGTGGAACCTAATGATCCAGCCCCTGAAACAggtaaataaatctatggaggaaatctattgtgttgctgcacttcagttgaa Alignment from CESAR GGCCTGGATGGCATCCCCGAATATGATGATTTTGAA-TTCAGCCCCTCCATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAg cattaattggtcccttgatacagctaccacggctgcgtcattgtctctagGGGCTGGATGGAATCCCAGATTATGAGGATTTTGAACTTCAGCCCAACAATAGTGGAACCTAATGATCCAGCCCCTGAAACAggtaaataaatctatggaggaaatctattgtgttgctgcacttcagttgaa Alignment from Spaln_aa2Genome GGCCTGGATGGCATCCCCGAATATGATGATTTTGAA-TTCAGCCCCTCCATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAG cattaattggtcccttgatacagctaccacggctgcgtcattgtctctagGGGCTGGATGGAATCCCAGATTATGAGGATTTTGAAcTTCAGCCCAACAATAGTGGAACCTAATGATCCAGCCCCTGAAACAGgtaaataaatctatggaggaaatctattgtgttgctgcacttcagttgaa Alignment from Spaln_nt2Genome GGCCTGGATGGCATCCCCGAATATGATGATTTTGAAT-TCAGCCCCTCCATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAG cattaattggtcccttgatacagctaccacggctgcgtcattgtctctagGGGCTGGATGGAATCCCAGATTATGAGGATTTTGAACTTCAGCCCAACAATAGTGGAACCTAATGATCCAGCCCCTGAAACAGgtaaataaatctatggaggaaatctattgtgttgctgcacttcagttgaa Alignment from Pairagon GGCCTGGATGGCATCCCCGAATATGATGATTTTGAA-TTCAGCCCCTCCATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAG cattaattggtcccttgatacagctaccacggctgcgtcattgtctctagGGGCTGGATGGAATCCCAGATTATGAGGATTTTGAACTTCAGCCCAACAATAGTGGAACCTAATGATCCAGCCCCTGAAACAGgtaaataaatctatggaggaaatctattgtgttgctgcacttcagttgaa Alignment from Exonerate_protein2genome GGCCTGGATGGCATCCCCGAATATGATGATTTTGAA-TTCAGCCCCTCCATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAG cattaattggtcccttgatacagctaccacggctgcgtcattgtctctagGGGCTGGATGGAATCCCAGATTATGAGGATTTTGAACTTCAGCCCAACAATAGTGGAACCTAATGATCCAGCCCCTGAAACAGgtaaataaatctatggaggaaatctattgtgttgctgcacttcagttgaa Alignment from Exonerate_coding2genome GGCCTGGATGGCATCCCCGAATATGATGATTTTGAA-TTCAGCCCCTCCATCGTGGAGCCTAAGGATCCAGCCCCTGAGACAG cattaattggtcccttgatacagctaccacggctgcgtcattgtctctagGGGCTGGATGGAATCCCAGATTATGAGGATTTTGAACTTCAGCCCAACAATAGTGGAACCTAATGATCCAGCCCCTGAAACAGgtaaataaatctatggaggaaatctattgtgttgctgcacttcagttgaa Alignment from GeneWise GACAATTGCTACGATCCAGGCCTGGATGGCATCCCCGAATATGATGATTTT-GAATTCAGCCCCTCCATCGTGGAGCCTAAGGATCCAGCCCCTGAGACA- cattaattggtcccttgatacagctaccacggctgcgtcattgtctctag------------------GGGCTGGATGGAATCCCAGATTATGAGGATTTTGAACTTCAGCCCAACAATAGTGGAACCTAATGATCCAGCCCCTGAAACAGgtaaataaatctatggaggaaatctattgtgttgctgcacttcagttgaa #### Nfkb2_ID9826_4 --> 0 - 0 Original Alignment CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACC-TATCCTACTGTCAAG gggggtttgcttctcctccttattaccgcccctatctctgccctctccagCGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCTCCCATGGTGGCTTGCCGGGTGCATCCAGTGAGAAGGGCCGGAAGACCCTATCCTACTGTAAAGgtaggttcagatgacacaggtgaccatgctctgtagagtgcatgaatcta Alignment from CESAR CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACC-TATCCTACTGTCAAG gggggtttgcttctcctccttattaccgcccctatctctgccctctccagCGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCTCCCATGGTGGCTTGCCGGGTGCATCCAGTGAGAAGGGCCGGAAGACCCTATCCTACTGTAAAGgtaggttcagatgacacaggtgaccatgctctgtagagtgcatgaatctc Alignment from Spaln_aa2Genome CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACC-TATCCTACTGTCAAG gggggtttgcttctcctccttattaccgcccctatctctgccctctccagCGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCTCCCATGGTGGCTTGCCGGGTGCATCCAGTGAGAAGGGCCGGAAGACCcTATCCTACTGTAAAGgtaggttcagatgacacaggtgaccatgctctgtagagtgcatgaatcta Alignment from Spaln_nt2Genome CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACC-TATCCTACTGTCAAG gggggtttgcttctcctccttattaccgcccctatctctgccctctccagCGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCTCCCATGGTGGCTTGCCGGGTGCATCCAGTGAGAAGGGCCGGAAGACCCTATCCTACTGTAAAGgtaggttcagatgacacaggtgaccatgctctgtagagtgcatgaatcta Alignment from Pairagon CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGA-CCTATCCTACTGTCAAG gggggtttgcttctcctccttattaccgcccctatctctgccctctccagCGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCTCCCATGGTGGCTTGCCGGGTGCATCCAGTGAGAAGGGCCGGAAGACCCTATCCTACTGTAAAGgtaggttcagatgacacaggtgaccatgctctgtagagtgcatgaatcta Alignment from Exonerate_protein2genome CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACC-TATCCTACTGTCAAG gggggtttgcttctcctccttattaccgcccctatctctgccctctccagCGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCTCCCATGGTGGCTTGCCGGGTGCATCCAGTGAGAAGGGCCGGAAGACCCTATCCTACTGTAAAGgtaggttcagatgacacaggtgaccatgctctgtagagtgcatgaatcta Alignment from Exonerate_coding2genome CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACC-TATCCTACTGTCAAG gggggtttgcttctcctccttattaccgcccctatctctgccctctccagCGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCTCCCATGGTGGCTTGCCGGGTGCATCCAGTGAGAAGGGCCGGAAGACCCTATCCTACTGTAAAGgtaggttcagatgacacaggtgaccatgctctgtagagtgcatgaatcta Alignment from GeneWise --------GCTGATGGCCCCTATCTGGTGATTGTGGAACAGCCCAAACAGCGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGTTTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAG-ACCTATCCTACTGTCAAG GGGGGTTTGCTTCTCCTCCTTATTACCGCCCCTATCTCTGCCCTCTCCAGCGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCTCCCATGGTGGCTTGCCGGGTGCATCCAGTGAGAAGGGCCGGAAGACCCTATCCTACTGTAAAGgtaggttcagatgacacaggtgaccatgctctgtagagtgcatgaatcta #### Nfkb2_ID9827_5 --> 0 - 2 Original Alignment ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTG-GGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTca aggtgaccatgctctgtagagtgcatgaatctcccttctttcttctttagATATGTAACTATGAGGGACCAGCCAAGATTGCGGTTGACCTGGCGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGCGGCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCATTTCTGTAGGACCCAAGGACATGACTGCTcagtaagggatgcttctctgtcttggagtggcatgattttctggatagccca Alignment from CESAR ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTG-GGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTca aggtgaccatgctctgtagagtgcatgaatctcccttctttcttctttagATATGTAACTATGAGGGACCAGCCAAGATTGCGGTTGACCTGGCGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGCGGCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCATTTCTGTAGGACCCAAGGACATGACTGCTcagtaagggatgcttctctgtcttggagtggcatgattttctggatagccca Alignment from Spaln_aa2Genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTG-GGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA aggtgaccatgctctgtagagtgcatgaatctcccttctttcttctttagATATGTAACTATGAGGGACCAGCCAAGATTGCGGTTGACCTGGCGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGcGGCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCATTTCTGTAGGACCCAAGGACATGACTGCTCAgtaagggatgcttctctgtcttggagtggcatgattttctggatagccca Alignment from Spaln_nt2Genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTG-GGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA aggtgaccatgctctgtagagtgcatgaatctcccttctttcttctttagATATGTAACTATGAGGGACCAGCCAAGATTGCGGTTGACCTGGCGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGCGGCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCATTTCTGTAGGACCCAAGGACATGACTGCTCAgtaagggatgcttctctgtcttggagtggcatgattttctggatagccca Alignment from Pairagon ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTG-GGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA aggtgaccatgctctgtagagtgcatgaatctcccttctttcttctttagATATGTAACTATGAGGGACCAGCCAAGATTGCGGTTGACCTGGCGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGCGGCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCATTTCTGTAGGACCCAAGGACATGACTGCTCAgtaagggatgcttctctgtcttggagtggcatgattttctggatagccca Alignment from Exonerate_protein2genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTG-GGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA aggtgaccatgctctgtagagtgcatgaatctcccttctttcttctttagATATGTAACTATGAGGGACCAGCCAAGATTGCGGTTGACCTGGCGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGCGGCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCATTTCTGTAGGACCCAAGGACATGACTGCTCAgtaagggatgcttctctgtcttggagtggcatgattttctggatagccca Alignment from Exonerate_coding2genome ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTGGTG-GGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA aggtgaccatgctctgtagagtgcatgaatctcccttctttcttctttagATATGTAACTATGAGGGACCAGCCAAGATTGCGGTTGACCTGGCGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGCGGCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCATTTCTGTAGGACCCAAGGACATGACTGCTCAgtaagggatgcttctctgtcttggagtggcatgattttctggatagccca Alignment from GeneWise ATCTGTAACTATGAGGGACCGGCCAAGATTGAGGTGGACCTGGTGACACACAGTGACCCACCTCGTGCGCATGCCCACAGTCTG-GTGGGCAAGCAGTGTTCAGAGTTGGGAGTGTGCGCTGTGTCTGTAGGACCCAAGGACATGACTGCTCA aggtgaccatgctctgtagagtgcatgaatctcccttctttcttctttagATATGTAACTATGAGGGACCAGCCAAGATTGCGGTTGACCTGGCGACACACAGTGACCCGCCTCGTGCACATGCCCACAGTCTGGTGCGGCAAGCAGTGTTCAGAACTAGGGGTGTGTGCCATTTCTGTAGGACCCAAGGACATGACTGCTCAgtaagggatgcttctctgtcttggagtggcatgattttctggatagccca #### Nfkb2_ID9830_8 --> 2 - 1 Original Alignment agTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGT-TCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAg cacctgtaggtcaatcgacatgctcgtttgtaccttgcccccttctttagaaTCTTCAGGGGCCTTGAACTTGAAGATCTCTGAGATGGACAAGACAGCAGGTCTCAGTGCATGGGGGAGATGAAGTTTATTTGCTCTGTGAGAGGGTGCAGAGAggtgagtcaccctgtttgggcaggctgtagtggtacaaatctagaaatcac Alignment from CESAR agTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGT-TCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAg cacctgtaggtcaatcgacatgctcgtttgtaccttgcccccttctttagaaTCTTCAGGGGCCTTGAACTTGAAGATCTCTGAGATGGACAAGACAGCAGGTCTCAGTGCATGGGGGAGATGAAGTTTATTTGCTCTGTGAGAGGGTGCAGAGAggtgagtcaccctgtttgggcaggctgtagtggtacaaatctagaaatcac Alignment from Spaln_aa2Genome AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGT-TCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG cacctgtaggtcaatcgacatgctcgtttgtaccttgcccccttctttagAATCTTCAGGGGCCTTGAACTTGAAGATCTCTGAGATGGACAAGACAGCAGGTcTCAGTGCATGGGGGAGATGAAGTTTATTTGCTCTGTGAGAGGGTGCAGAGAGgtgagtcaccctgtttgggcaggctgtagtggtacaaatctagaaatcac Alignment from Spaln_nt2Genome AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGT-TCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG cacctgtaggtcaatcgacatgctcgtttgtaccttgcccccttctttagAATCTTCAGGGGCCTTGAACTTGAAGATCTCTGAGATGGACAAGACAGCAGGTCTCAGTGCATGGGGGAGATGAAGTTTATTTGCTCTGTGAGAGGGTGCAGAGAGgtgagtcaccctgtttgggcaggctgtagtggtacaaatctagaaatcac Alignment from Pairagon AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGT-TCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG cacctgtaggtcaatcgacatgctcgtttgtaccttgcccccttctttagAATCTTCAGGGGCCTTGAACTTGAAGATCTCTGAGATGGACAAGACAGCAGGTCTCAGTGCATGGGGGAGATGAAGTTTATTTGCTCTGTGAGAGGGTGCAGAGAGgtgagtcaccctgtttgggcaggctgtagtggtacaaatctagaaatcac Alignment from Exonerate_protein2genome AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGT-TCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG cacctgtaggtcaatcgacatgctcgtttgtaccttgcccccttctttagAATCTTCAGGGGCCTTGAACTTGAAGATCTCTGAGATGGACAAGACAGCAGGTCTCAGTGCATGGGGGAGATGAAGTTTATTTGCTCTGTGAGAGGGTGCAGAGAGgtgagtcaccctgtttgggcaggctgtagtggtacaaatctagaaatcac Alignment from Exonerate_coding2genome AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGT-TCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG cacctgtaggtcaatcgacatgctcgtttgtaccttgcccccttctttagAATCTTCAGGGGCCTTGAACTTGAAGATCTCTGAGATGGACAAGACAGCAGGTCTCAGTGCATGGGGGAGATGAAGTTTATTTGCTCTGTGAGAGGGTGCAGAGAGgtgagtcaccctgtttgggcaggctgtagtggtacaaatctagaaatcac Alignment from GeneWise AGTCTCCAGGGGCCTCGAACCTGAAGATCTCCCGAATGGACAAGACAGCGGGT-TCCGTGCGCGGTGGAGACGAAGTTTATTTGCTCTGTGATAAGGTGCAAAAAG cacctgtaggtcaatcgacatgctcgtttgtaccttgcccccttctttagAATCTTCAGGGGCCTTGAACTTGAAGATCTCTGAGATGGACAAGACAGCAGGTCTCAGTGCATGGGGGAGATGAAGTTTATTTGCTCTGTGAGAGGGTGCAGAGAGgtgagtcaccctgtttgggcaggctgtagtggtacaaatctagaaatcac #### Nfkb2_ID9831_9 --> 2 - 0 Original Alignment acGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTT-GGGGACTTCTCTCCCACAGACGTTCATAAACAG agaaatcacttgccccctccatatggcttctctctttgttctctactcagatGACATTGAGGTTCAATTCTATGAGGATGATGAGAATGGGTGGCAAGCTTTTCGGGGACTTTTCTCCCACAGATGTTTATAAACAGgtaagacagcctgagccttattccctctcttcagtgaaaacatgctggcc Alignment from CESAR acGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTT-GGGGACTTCTCTCCCACAGACGTTCATAAACAG agaaatcacttgccccctccatatggcttctctctttgttctctactcagatGACATTGAGGTTCAATTCTATGAGGATGATGAGAATGGGTGGCAAGCTTTTCGGGGACTTTTCTCCCACAGATGTTTATAAACAGgtaagacagcctgagccttattccctctcttcagtgaaaacatgctggcc Alignment from Spaln_aa2Genome ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCC-TTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG agaaatcacttgccccctccatatggcttctctctttgttctctactcagATGACATTGAGGTTCAATTCTATGAGGATGATGAGAATGGGTGGCAAGCTtTTCGGGGACTTTTCTCCCACAGATGTTTATAAACAGgtaagacagcctgagccttattccctctcttcagtgaaaacatgctggcc Alignment from Spaln_nt2Genome ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTT-GGGGACTTCTCTCCCACAGACGTTCATAAACAG agaaatcacttgccccctccatatggcttctctctttgttctctactcagATGACATTGAGGTTCAATTCTATGAGGATGATGAGAATGGGTGGCAAGCTTTTCGGGGACTTTTCTCCCACAGATGTTTATAAACAGgtaagacagcctgagccttattccctctcttcagtgaaaacatgctggcc Alignment from Pairagon ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCCTTT-GGGGACTTCTCTCCCACAGACGTTCATAAACAG agaaatcacttgccccctccatatggcttctctctttgttctctactcagATGACATTGAGGTTCAATTCTATGAGGATGATGAGAATGGGTGGCAAGCTTTTCGGGGACTTTTCTCCCACAGATGTTTATAAACAGgtaagacagcctgagccttattccctctcttcagtgaaaacatgctggcc Alignment from Exonerate_protein2genome ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCC-TTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG agaaatcacttgccccctccatatggcttctctctttgttctctactcagATGACATTGAGGTTCAATTCTATGAGGATGATGAGAATGGGTGGCAAGCTTTTCGGGGACTTTTCTCCCACAGATGTTTATAAACAGgtaagacagcctgagccttattccctctcttcagtgaaaacatgctggcc Alignment from Exonerate_coding2genome ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAAGCC-TTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG agaaatcacttgccccctccatatggcttctctctttgttctctactcagATGACATTGAGGTTCAATTCTATGAGGATGATGAGAATGGGTGGCAAGCTTTTCGGGGACTTTTCTCCCACAGATGTTTATAAACAGgtaagacagcctgagccttattccctctcttcagtgaaaacatgctggcc Alignment from GeneWise ACGACATTGAGGTTCGGTTCTATGAGGATGATGAGAATGGATGGCAA-GCCTTTGGGGACTTCTCTCCCACAGACGTTCATAAACAG agaaatcacttgccccctccatatggcttctctctttgttctctactcagATGACATTGAGGTTCAATTCTATGAGGATGATGAGAATGGGTGGCAAGCTTTTCGGGGACTTTTCTCCCACAGATGTTTATAAACAGgtaagacagcctgagccttattccctctcttcagtgaaaacatgctggcc #### Nfkb2_ID9834_12 --> 2 - 1 Original Alignment gtGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGG-ACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAg tagactgccttccatgcctctgtcgggttgttcgtgttcctatttttcaggtGGCAGCCTTGGCTTTTTATCCTCCCCATTGGCCTATAACCCCTACCAATCTGGTGCTTCCCCAATGGGTTATTATCTGGGTGGGGGGGGTGGAACACAGATGGCTGGCTCTAGACGGGACACTGATGCTGGTGAGGGTGCAGAGGAGCCCAGGCACACCCCCAGAGGCTCCCCAGGGTGAACCACAAGCCCTTGACACATTGCATCGAggtaagtgcaggcgtgagggttagcatgcgctattcaaagtgcaaggcagg Alignment from CESAR gtGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGG-ACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAg tagactgccttccatgcctctgtcgggttgttcgtgttcctatttttcaggtGGCAGCCTTGGCTTTTTATCCTCCCCATTGGCCTATAACCCCTACCAATCTGGTGCTTCCCCAATGGGTTATTATCTGGGTGGGGGGGGTGGAACACAGATGGCTGGCTCTAGACGGGACACTGATGCTGGTGAGGGTGCAGAGGAGCCCAGGCACACCCCCAGAGGCTCCCCAGGGTGAACCACAAGCCCTTGACACATTGCATCGAggtaagtgcaggcgtgagggttagcatgcgctattcaaagtgcaaggcagg Alignment from Spaln_aa2Genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGG-ACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tagactgccttccatgcctctgtcgggttgttcgtgttcctatttttcagGTGGCAGCCTTGGCTTTTTATCCTCCCCATTGGCCTATAACCCCTACCAATCTGGTGCTTCCCCAATGGGTTATTATCTGGGTGGGGGGGGTGGAACACAGATGGCTGGCTCTAGACGGGACACTGATGCTGGTGAGGGTGCAGAGGAGCCCAGGcACACCCCCAGAGGCTCCCCAGGGTGAACCACAAGCCCTTGACACATTGCATCGAGgtaagtgcaggcgtgagggttagcatgcgctattcaaagtgcaaggcagg Alignment from Spaln_nt2Genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGG-ACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tagactgccttccatgcctctgtcgggttgttcgtgttcctatttttcagGTGGCAGCCTTGGCTTTTTATCCTCCCCATTGGCCTATAACCCCTACCAATCTGGTGCTTCCCCAATGGGTTATTATCTGGGTGGGGGGGGTGGAACACAGATGGCTGGCTCTAGACGGGACACTGATGCTGGTGAGGGTGCAGAGGAGCCCAGGCACACCCCCAGAGGCTCCCCAGGGTGAACCACAAGCCCTTGACACATTGCATCGAGgtaagtgcaggcgtgagggttagcatgcgctattcaaagtgcaaggcagg Alignment from Pairagon GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGG-ACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tagactgccttccatgcctctgtcgggttgttcgtgttcctatttttcagGTGGCAGCCTTGGCTTTTTATCCTCCCCATTGGCCTATAACCCCTACCAATCTGGTGCTTCCCCAATGGGTTATTATCTGGGTGGGGGGGGTGGAACACAGATGGCTGGCTCTAGACGGGACACTGATGCTGGTGAGGGTGCAGAGGAGCCCAGGCACACCCCCAGAGGCTCCCCAGGGTGAACCACAAGCCCTTGACACATTGCATCGAGgtaagtgcaggcgtgagggttagcatgcgctattcaaagtgcaaggcagg Alignment from Exonerate_protein2genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGG-ACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tagactgccttccatgcctctgtcgggttgttcgtgttcctatttttcagGTGGCAGCCTTGGCTTTTTATCCTCCCCATTGGCCTATAACCCCTACCAATCTGGTGCTTCCCCAATGGGTTATTATCTGGGTGGGGGGGGTGGAACACAGATGGCTGGCTCTAGACGGGACACTGATGCTGGTGAGGGTGCAGAGGAGCCCAGGCACACCCCCAGAGGCTCCCCAGGGTGAACCACAAGCCCTTGACACATTGCATCGAGgtaagtgcaggcgtgagggttagcatgcgctattcaaagtgcaaggcagg Alignment from Exonerate_coding2genome GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGG-ACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tagactgccttccatgcctctgtcgggttgttcgtgttcctatttttcagGTGGCAGCCTTGGCTTTTTATCCTCCCCATTGGCCTATAACCCCTACCAATCTGGTGCTTCCCCAATGGGTTATTATCTGGGTGGGGGGGGTGGAACACAGATGGCTGGCTCTAGACGGGACACTGATGCTGGTGAGGGTGCAGAGGAGCCCAGGCACACCCCCAGAGGCTCCCCAGGGTGAACCACAAGCCCTTGACACATTGCATCGAGgtaagtgcaggcgtgagggttagcatgcgctattcaaagtgcaaggcagg Alignment from GeneWise GTGGCAGCCTCGGCTTTTTCTCCTCCTCCTTGGCCTACAACCCCTACCAATCCGGTGCAGCCCCAATGGGCTGCTATCCGGGTGGGGGAGGTGGAGCGCAGATGGCCGGTTCTAGACGGGACACCGATGCTGGCGAGGGGGCAGAGGAGCCCAGG-ACGCCCCCGGAGGCTCCCCAGGGCGAACCACAGGCCCTTGACACACTGCAGCGAG tagactgccttccatgcctctgtcgggttgttcgtgttcctatttttcagGTGGCAGCCTTGGCTTTTTATCCTCCCCATTGGCCTATAACCCCTACCAATCTGGTGCTTCCCCAATGGGTTATTATCTGGGTGGGGGGGGTGGAACACAGATGGCTGGCTCTAGACGGGACACTGATGCTGGTGAGGGTGCAGAGGAGCCCAGGCACACCCCCAGAGGCTCCCCAGGGTGAACCACAAGCCCTTGACACATTGCATCGAGgtaagtgcaggcgtgagggttagcatgcgctattcaaagtgcaaggcagg #### Nfkb2_ID9836_14 --> 1 - 0 Original Alignment gCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTC-ACCAACCACCTGCACCAG atgaaaataggggtctgcagtagtgtggttgtcttccttgtccctcacagcCCATTACACTTAGCCATTATCCATGGGCAGATAGGTATCATTGAACAGATTGCCCATGTCATTTACCATGCTCAGTACCTTGGTGTAATAAACCTCCACCAACCACCTGCATCAGgtacagagaagttaaaaattgaaagcaagaagtcgaaggctgaccgattt Alignment from CESAR gCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTC-ACCAACCACCTGCACCAG atgaaaataggggtctgcagtagtgtggttgtcttccttgtccctcacagcCCATTACACTTAGCCATTATCCATGGGCAGATAGGTATCATTGAACAGATTGCCCATGTCATTTACCATGCTCAGTACCTTGGTGTAATAAACCTCCACCAACCACCTGCATCAGgtacagagaagttaaaaattgaaagcaagaagtcgaaggctgaccactcc Alignment from Spaln_aa2Genome GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTC-ACCAACCACCTGCACCAG atgaaaataggggtctgcagtagtgtggttgtcttccttgtccctcacagCCCATTACACTTAGCCATTATCCATGGGCAGATAGGTATCATTGAACAGATTGCCCATGTCATTTACCATGCTCAGTACCTTGGTGTAATAAACCTCcACCAACCACCTGCATCAGgtacagagaagttaaaaattgaaagcaagaagtcgaaggctgaccgattt Alignment from Spaln_nt2Genome GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCT-CACCAACCACCTGCACCAG atgaaaataggggtctgcagtagtgtggttgtcttccttgtccctcacagCCCATTACACTTAGCCATTATCCATGGGCAGATAGGTATCATTGAACAGATTGCCCATGTCATTTACCATGCTCAGTACCTTGGTGTAATAAACCTCCACCAACCACCTGCATCAGgtacagagaagttaaaaattgaaagcaagaagtcgaaggctgaccgattt Alignment from Pairagon GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCT-CACCAACCACCTGCACCAG atgaaaataggggtctgcagtagtgtggttgtcttccttgtccctcacagCCCATTACACTTAGCCATTATCCATGGGCAGATAGGTATCATTGAACAGATTGCCCATGTCATTTACCATGCTCAGTACCTTGGTGTAATAAACCTCCACCAACCACCTGCATCAGgtacagagaagttaaaaattgaaagcaagaagtcgaaggctgaccgattt Alignment from Exonerate_protein2genome GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTC-ACCAACCACCTGCACCAG atgaaaataggggtctgcagtagtgtggttgtcttccttgtccctcacagCCCATTACACTTAGCCATTATCCATGGGCAGATAGGTATCATTGAACAGATTGCCCATGTCATTTACCATGCTCAGTACCTTGGTGTAATAAACCTCCACCAACCACCTGCATCAGgtacagagaagttaaaaattgaaagcaagaagtcgaaggctgaccgattt Alignment from Exonerate_coding2genome GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAACCTC-ACCAACCACCTGCACCAG atgaaaataggggtctgcagtagtgtggttgtcttccttgtccctcacagCCCATTACACTTAGCCATTATCCATGGGCAGATAGGTATCATTGAACAGATTGCCCATGTCATTTACCATGCTCAGTACCTTGGTGTAATAAACCTCCACCAACCACCTGCATCAGgtacagagaagttaaaaattgaaagcaagaagtcgaaggctgaccgattt Alignment from GeneWise GCCACTGCACCTGGCCATCATCCATGGGCAGACTGGTGTCATTGAGCAGATAGCCCACGTCATTTATCACGCTCAGTACCTCGGCGTCATCAAC-CTCACCAACCACCTGCACCAG atgaaaataggggtctgcagtagtgtggttgtcttccttgtccctcacagCCCATTACACTTAGCCATTATCCATGGGCAGATAGGTATCATTGAACAGATTGCCCATGTCATTTACCATGCTCAGTACCTTGGTGTAATAAACCTCCACCAACCACCTGCATCAGgtacagagaagttaaaaattgaaagcaagaagtcgaaggctgaccgattt #### Nfkb2_ID9837_15 --> 0 - 1 Original Alignment ACGCCTCTGCACCTGGCGGTAATC-ACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCT------------------------------------------CTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGg attgaaagcaagaagtcgaaggctgaccactcccaacctctgatccacagACCCCACTACATCTTGCCATAATCCACTGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACACTGCTGGAGAGGCATGGAGACTCTGCACTCCACTTGGCTCACACCTGTGAAAATTTCTTGCCATCTTGGACCTCCCATGAGCTCAGAGCAGGAGCAGCTGCCCCTGAGTTGTTGCAGGCATTGTTGCGCAGTGAAGCCCATGCTGTACCCCAAATA---CATATGCCTGAGTTTGAGggtacgatgccaattactcttgtaccagaaacaatgatgtaaacccagagg Alignment from CESAR ACGCCTCTGCACCTGGCGGTAATC-ACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCT------------------------------------------CTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGg attgaaagcaagaagtcgaaggctgaccactcccaacctctgatccacagACCCCACTACATCTTGCCATAATCCACTGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACACTGCTGGAGAGGCATGGAGACTCTGCACTCCACTTGGCTCACACCTGTGAAAATTTCTTGCCATCTTGGACCTCCCATGAGCTCAGAGCAGGAGCAGCTGCCCCTGAGTTGTTGCAGGCATTGTTGCGCAGTGAAGCCCATGCTGTACCCCAAATA---CATATGCCTGAGTTTGAGggtacgatgccaattactcttgtaccagaaacaatgatgtaaacccagagg Alignment from Spaln_aa2Genome ACGCCTCTGCACCTGGCGGTAATC-ACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCTCTCCGGG CAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG attgaaagcaagaagtcgaaggctgaccactcccaacctctgatccacagACCCCACTACATCTTGCCATAATCcACTGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACACTGCTGGAGAGGCATGGAGACTCTGCACTCCACTTGGCTCACACCTgtgaaaatttcttgccatcttggacctcccatgagctcagagCAGGAGCAGCTGCCCCTGAGTTGTTGCAGGCATTGTTGCGCAGTGAAGCCCATGCTGTACCCCAAATA---CATATGCCTGAGTTTGAGGgtacgatgccaattactcttgtaccagaaacaatgatgtaaacccagagg Alignment from Spaln_nt2Genome ACGCCTCTGCACCTGGCGGTAATC-ACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCTCTC--CG GGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG attgaaagcaagaagtcgaaggctgaccactcccaacctctgatccacagACCCCACTACATCTTGCCATAATCCACTGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACACTGCTGGAGAGGCATGGAGACTCTGCACTCCACTTGGCTCACACCTgtgaaaatttcttgccatcttggacctcccatgagctcagAGCAGGAGCAGCTGCCCCTGAGTTGTTGCAGGCATTGTTGCGCAGTGAAGCCCATGCTGTACCCCAAATA---CATATGCCTGAGTTTGAGGgtacgatgccaattactcttgtaccagaaacaatgatgtaaacccagagg Alignment from Pairagon ACGCCTCTGCACCTGGCGGTAAT-CACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCT------------------------------------------CTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG attgaaagcaagaagtcgaaggctgaccactcccaacctctgatccacagACCCCACTACATCTTGCCATAATCCACTGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACACTGCTGGAGAGGCATGGAGACTCTGCACTCCACTTGGCTCACACCTGTGAAAATTTCTTGCCATCTTGGACCTCCCATGAGCTCAGAGCAGGAGCAGCTGCCCCTGAGTTGTTGCAGGCATTGTTGCGCAGTGAAGCCCATGCTGTACCCCAAATA---CATATGCCTGAGTTTGAGGgtacgatgccaattactcttgtaccagaaacaatgatgtaaacccagagg Alignment from Exonerate_protein2genome ACGCCTCTGCACCTGGCGGTAATC-ACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCTCTCCG GGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG attgaaagcaagaagtcgaaggctgaccactcccaacctctgatccacagACCCCACTACATCTTGCCATAATCCACTGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACACTGCTGGAGAGGCATGGAGACTCTGCACTCCACTTGGCTCACACctgtgaaaatttcttgccatcttggacctcccatgagctcagAGCAGGAGCAGCTGCCCCTGAGTTGTTGCAGGCATTGTTGCGCAGTGAAGCCCATGCTGTACCCCAAATA---CATATGCCTGAGTTTGAGGgtacgatgccaattactcttgtaccagaaacaatgatgtaaacccagagg Alignment from Exonerate_coding2genome ACGCCTCTGCACCTGGCGGTAATC-ACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCTCTCCG GGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG attgaaagcaagaagtcgaaggctgaccactcccaacctctgatccacagACCCCACTACATCTTGCCATAATCCACTGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACACTGCTGGAGAGGCATGGAGACTCTGCACTCCACTTGGCTCACACctgtgaaaatttcttgccatcttggacctcccatgagctcagAGCAGGAGCAGCTGCCCCTGAGTTGTTGCAGGCATTGTTGCGCAGTGAAGCCCATGCTGTACCCCAAATA---CATATGCCTGAGTTTGAGGgtacgatgccaattactcttgtaccagaaacaatgatgtaaacccagagg Alignment from GeneWise ACGCCTCTGCACCTGGCGGTA-ATCACTGGGCAGACAAGGGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACGCTGCTGGATCGGCACGGAGACTCCGCCCTCCACTTGGCT------------------------------------------CTCCGGGCAGGTGCTGCAGCCCCAGAGCTGTTGCAGGCACTGTTGCGCAGCGGAGCCCATGCTGTGCCCCAAATATTGCACATGCCTGATTTTGAGG attgaaagcaagaagtcgaaggctgaccactcccaacctctgatccacagACCCCACTACATCTTGCCATAATCCACTGGGCAGACAAGAGTGGTGAGCTTCCTGCTGCAGGTGGGTGCAGACCCCACACTGCTGGAGAGGCATGGAGACTCTGCACTCCACTTGGCTCACACCTGTGAAAATTTCTTGCCATCTTGGACCTCCCATGAGCTCAGAGCAGGAGCAGCTGCCCCTGAGTTGTTGCAGGCATTGTTGCGCAGTGAAGCCCATGCTGTACCCCAAATA---CATATGCCTGAGTTTGAGGgtacgatgccaattactcttgtaccagaaacaatgatgtaaacccagagg #### Nfkb2_ID9838_16 --> 2 - 0 Original Alignment gaCTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAG-TGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cattaaatgtcatttaggatgaatgccaatgccacgtctccttggtacaggaCTATACCCTGTACACCTGGCAGTCCATGCCCGGAGCCCTGAGCTGTCTGGACCTCTTAGTTGACTGTGGAGCTGTAGTGGAGGCCCCAGGGAGGCAGGGGGGCCGAAATGCCCTGCACCTGGCAACAGAGATGGAAGAATTGGGGCTGGTCGCCCATTTAGTCACCAAGgttagtattcaactgtgtggactatgaatggggtaagataatagaggctg Alignment from CESAR gaCTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAG-TGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cattaaatgtcatttaggatgaatgccaatgccacgtctccttggtacaggaCTATACCCTGTACACCTGGCAGTCCATGCCCGGAGCCCTGAGCTGTCTGGACCTCTTAGTTGACTGTGGAGCTGTAGTGGAGGCCCCAGGGAGGCAGGGGGGCCGAAATGCCCTGCACCTGGCAACAGAGATGGAAGAATTGGGGCTGGTCGCCCATTTAGTCACCAAGgttagtattcaactgtgtggactatgaatggggtaagataatagaggctg Alignment from Spaln_aa2Genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAG-TGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cattaaatgtcatttaggatgaatgccaatgccacgtctccttggtacagGACTATACCCTGTACACCTGGCAGTCCATGCCCGGAGCCCTGAGcTGTCTGGACCTCTTAGTTGACTGTGGAGCTGTAGTGGAGGCCCCAGGGAGGCAGGGGGGCCGAAATGCCCTGCACCTGGCAACAGAGATGGAAGAATTGGGGCTGGTCGCCCATTTAGTCACCAAGgttagtattcaactgtgtggactatgaatggggtaagataatagaggctg Alignment from Spaln_nt2Genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAG-TGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cattaaatgtcatttaggatgaatgccaatgccacgtctccttggtacagGACTATACCCTGTACACCTGGCAGTCCATGCCCGGAGCCCTGAGCTGTCTGGACCTCTTAGTTGACTGTGGAGCTGTAGTGGAGGCCCCAGGGAGGCAGGGGGGCCGAAATGCCCTGCACCTGGCAACAGAGATGGAAGAATTGGGGCTGGTCGCCCATTTAGTCACCAAGgttagtattcaactgtgtggactatgaatggggtaagataatagaggctg Alignment from Pairagon GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAG-TGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cattaaatgtcatttaggatgaatgccaatgccacgtctccttggtacagGACTATACCCTGTACACCTGGCAGTCCATGCCCGGAGCCCTGAGCTGTCTGGACCTCTTAGTTGACTGTGGAGCTGTAGTGGAGGCCCCAGGGAGGCAGGGGGGCCGAAATGCCCTGCACCTGGCAACAGAGATGGAAGAATTGGGGCTGGTCGCCCATTTAGTCACCAAGgttagtattcaactgtgtggactatgaatggggtaagataatagaggctg Alignment from Exonerate_protein2genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAG-TGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cattaaatgtcatttaggatgaatgccaatgccacgtctccttggtacagGACTATACCCTGTACACCTGGCAGTCCATGCCCGGAGCCCTGAGCTGTCTGGACCTCTTAGTTGACTGTGGAGCTGTAGTGGAGGCCCCAGGGAGGCAGGGGGGCCGAAATGCCCTGCACCTGGCAACAGAGATGGAAGAATTGGGGCTGGTCGCCCATTTAGTCACCAAGgttagtattcaactgtgtggactatgaatggggtaagataatagaggctg Alignment from Exonerate_coding2genome GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCTGAG-TGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cattaaatgtcatttaggatgaatgccaatgccacgtctccttggtacagGACTATACCCTGTACACCTGGCAGTCCATGCCCGGAGCCCTGAGCTGTCTGGACCTCTTAGTTGACTGTGGAGCTGTAGTGGAGGCCCCAGGGAGGCAGGGGGGCCGAAATGCCCTGCACCTGGCAACAGAGATGGAAGAATTGGGGCTGGTCGCCCATTTAGTCACCAAGgttagtattcaactgtgtggactatgaatggggtaagataatagaggctg Alignment from GeneWise GACTATACCCTGTACACCTGGCAGTCCATGCCCGAAGCCCT-GAGTGCCTGGATCTGTTAGTTGACTGTGGAGCTGAAGTGGAGGCCCCAGAGAGGCAAGGGGGCCGAACTGCCCTGCATCTAGCCACAGAGATGGAGGAGTTGGGGCTGGTCACCCATCTAGTCACCAAG cattaaatgtcatttaggatgaatgccaatgccacgtctccttggtacagGACTATACCCTGTACACCTGGCAGTCCATGCCCGGAGCCCTGAGCTGTCTGGACCTCTTAGTTGACTGTGGAGCTGTAGTGGAGGCCCCAGGGAGGCAGGGGGGCCGAAATGCCCTGCACCTGGCAACAGAGATGGAAGAATTGGGGCTGGTCGCCCATTTAGTCACCAAGgttagtattcaactgtgtggactatgaatggggtaagataatagaggctg #### Nfkb2_ID9839_17 --> 0 - 1 Original Alignment CTCCATGCTAAT-GTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTg gctttagttggttgtggccagactttgtctcctctgtctccctcttccagCTCCATGCCAATCGTGAATGCTTGGACCTTTGCTGCAAATACACCACTCCATCTGGCAGCTGGACTTGGATCCCCAACACTTTCTCACCTCCTTCTAAAGGCTggtaagtcttgcaattagaaaatggcaggccaggggaggaaggggacaggg Alignment from CESAR CTCCATGCTAAT-GTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTg gctttagttggttgtggccagactttgtctcctctgtctccctcttccagCTCCATGCCAATCGTGAATGCTTGGACCTTTGCTGCAAATACACCACTCCATCTGGCAGCTGGACTTGGATCCCCAACACTTTCTCACCTCCTTCTAAAGGCTggtaagtcttgcaattagaaaatggcaggccaggggaggaaggggacaggg Alignment from Spaln_aa2Genome CTCCATGCTAAT-GTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gctttagttggttgtggccagactttgtctcctctgtctccctcttccagCTCCATGCCAATcGTGAATGCTTGGACCTTTGCTGCAAATACACCACTCCATCTGGCAGCTGGACTTGGATCCCCAACACTTTCTCACCTCCTTCTAAAGGCTGgtaagtcttgcaattagaaaatggcaggccaggggaggaaggggacaggg Alignment from Spaln_nt2Genome CTCCATGCTAAT-GTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gctttagttggttgtggccagactttgtctcctctgtctccctcttccagCTCCATGCCAATCGTGAATGCTTGGACCTTTGCTGCAAATACACCACTCCATCTGGCAGCTGGACTTGGATCCCCAACACTTTCTCACCTCCTTCTAAAGGCTGgtaagtcttgcaattagaaaatggcaggccaggggaggaaggggacaggg Alignment from Pairagon CTCCATGCTAAT-GTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gctttagttggttgtggccagactttgtctcctctgtctccctcttccagCTCCATGCCAATCGTGAATGCTTGGACCTTTGCTGCAAATACACCACTCCATCTGGCAGCTGGACTTGGATCCCCAACACTTTCTCACCTCCTTCTAAAGGCTGgtaagtcttgcaattagaaaatggcaggccaggggaggaaggggacaggg Alignment from Exonerate_protein2genome CTCCATGCTAAT-GTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gctttagttggttgtggccagactttgtctcctctgtctccctcttccagCTCCATGCCAATCGTGAATGCTTGGACCTTTGCTGCAAATACACCACTCCATCTGGCAGCTGGACTTGGATCCCCAACACTTTCTCACCTCCTTCTAAAGGCTGgtaagtcttgcaattagaaaatggcaggccaggggaggaaggggacaggg Alignment from Exonerate_coding2genome CTCCATGCTAAT-GTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gctttagttggttgtggccagactttgtctcctctgtctccctcttccagCTCCATGCCAATCGTGAATGCTTGGACCTTTGCTGCAAATACACCACTCCATCTGGCAGCTGGACTTGGATCCCCAACACTTTCTCACCTCCTTCTAAAGGCTGgtaagtcttgcaattagaaaatggcaggccaggggaggaaggggacaggg Alignment from GeneWise -------------GTGAATGCCCGGACCTTTGCTGGAAACACACCCCTCCACCTGGCAGCTGGACTCGGGTCCCCAACTCTTACTCGCCTCCTTCTAAAGGCTG gctttagttggttgtggccagactttgtctcctctgtctccctcttccagCTCCATGCCAATCGTGAATGCTTGGACCTTTGCTGCAAATACACCACTCCATCTGGCAGCTGGACTTGGATCCCCAACACTTTCTCACCTCCTTCTAAAGGCTGgtaagtcttgcaattagaaaatggcaggccaggggaggaaggggacaggg #### Nfkb2_ID9840_18 --> 2 - 0 Original Alignment gtGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGC-CCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaattgtaactagtcttttcatccccatctttcctccacaaggtGCTGATATCCACACAGAGAATGAAGAACCTCTGTGTCCCACTGCCATCCCCCTCAACTTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGAGGTCATACCCCTCTTGATCTCACTTGCAGTACAAAGgtgggtttacccttggagaagattggctgaagagcagggtctgctgcagt Alignment from CESAR gtGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGC-CCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaattgtaactagtcttttcatccccatctttcctccacaaggtGCTGATATCCACACAGAGAATGAAGAACCTCTGTGTCCCACTGCCATCCCCCTCAACTTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGAGGTCATACCCCTCTTGATCTCACTTGCAGTACAAAGgtgggtttacccttggagaagattggctgaagagcagggtctgctgcagt Alignment from Spaln_aa2Genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGC-CCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaattgtaactagtcttttcatccccatctttcctccacaagGTGCTGATATCCACACAGAGAATGAAGAACCTCTGTGTcCCACTGCCATCCCCCTCAACTTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGAGGTCATACCCCTCTTGATCTCACTTGCAGTACAAAGgtgggtttacccttggagaagattggctgaagagcagggtctgctgcagt Alignment from Spaln_nt2Genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTG-CCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaattgtaactagtcttttcatccccatctttcctccacaagGTGCTGATATCCACACAGAGAATGAAGAACCTCTGTGTCCCACTGCCATCCCCCTCAACTTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGAGGTCATACCCCTCTTGATCTCACTTGCAGTACAAAGgtgggtttacccttggagaagattggctgaagagcagggtctgctgcagt Alignment from Pairagon GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTG-CCCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaattgtaactagtcttttcatccccatctttcctccacaagGTGCTGATATCCACACAGAGAATGAAGAACCTCTGTGTCCCACTGCCATCCCCCTCAACTTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGAGGTCATACCCCTCTTGATCTCACTTGCAGTACAAAGgtgggtttacccttggagaagattggctgaagagcagggtctgctgcagt Alignment from Exonerate_protein2genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGC-CCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaattgtaactagtcttttcatccccatctttcctccacaagGTGCTGATATCCACACAGAGAATGAAGAACCTCTGTGTCCCACTGCCATCCCCCTCAACTTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGAGGTCATACCCCTCTTGATCTCACTTGCAGTACAAAGgtgggtttacccttggagaagattggctgaagagcagggtctgctgcagt Alignment from Exonerate_coding2genome GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGC-CCGCTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaattgtaactagtcttttcatccccatctttcctccacaagGTGCTGATATCCACACAGAGAATGAAGAACCTCTGTGTCCCACTGCCATCCCCCTCAACTTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGAGGTCATACCCCTCTTGATCTCACTTGCAGTACAAAGgtgggtttacccttggagaagattggctgaagagcagggtctgctgcagt Alignment from GeneWise GTGCTGACATCCATGCAGAGAATGAGGAGCCTCTGTGCCCG-CTGCCCTCACCCTCGACCTCTGGGAGCGACTCCGACTCTGAAGGGCCTGAGAGGGATACCCAAAGAAACTTCCGAGGCCATACCCCTCTTGACCTCACTTGCAGTACCAAG cagtttaggaattgtaactagtcttttcatccccatctttcctccacaagGTGCTGATATCCACACAGAGAATGAAGAACCTCTGTGTCCCACTGCCATCCCCCTCAACTTCTGGGAGTGACTCTGACTCTGAGGGGCCTGAAAGAGACACTCAAAGAACCTTCCGAGGTCATACCCCTCTTGATCTCACTTGCAGTACAAAGgtgggtttacccttggagaagattggctgaagagcagggtctgctgcagt #### Nfkb2_ID9842_20 --> 2 - 0 Original Alignment ggCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCC-CAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG acatgctcctgcacgtatgttagactactgcatcgcgtttctctccccagggCCAGGGCTGTCCCTAGGGGATACAGCCCTACAAAACTTGCAGCAACTGTTAGATGGTCCTGAAGCGCCAAGGTAGCTGGGCAGAGCTAGCAGAGCGTCTGGGATTGAGAAGCCTGGTGGACACATACAGGAAAACTCCGTCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtaggacagttagacactatgctgaagcctcaatcagctttttccacccc Alignment from CESAR ggCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCC-CAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG acatgctcctgcacgtatgttagactactgcatcgcgtttctctccccagggCCAGGGCTGTCCCTAGGGGATACAGCCCTACAAAACTTGCAGCAACTGTTAGATGGTCCTGAAGCGCCAAGGTAGCTGGGCAGAGCTAGCAGAGCGTCTGGGATTGAGAAGCCTGGTGGACACATACAGGAAAACTCCGTCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtaggacagttagacactatgctgaagcctcaatcagtgcccgggcctcc Alignment from Spaln_aa2Genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCC-CAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG acatgctcctgcacgtatgttagactactgcatcgcgtttctctccccagGGCCAGGGCTGTCCCTAGGGGATACAGCCCTACAAAACTTGCAGCAACTGTTAGATGGTCCTGAAGCGcCAAGGTAGCTGGGCAGAGCTAGCAGAGCGTCTGGGATTGAGAAGCCTGGTGGACACATACAGGAAAACTCCGTCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtaggacagttagacactatgctgaagcctcaatcagctttttccacccc Alignment from Spaln_nt2Genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGC-CCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG acatgctcctgcacgtatgttagactactgcatcgcgtttctctccccagGGCCAGGGCTGTCCCTAGGGGATACAGCCCTACAAAACTTGCAGCAACTGTTAGATGGTCCTGAAGCGCCAAGGTAGCTGGGCAGAGCTAGCAGAGCGTCTGGGATTGAGAAGCCTGGTGGACACATACAGGAAAACTCCGTCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtaggacagttagacactatgctgaagcctcaatcagctttttccacccc Alignment from Pairagon GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGC-CCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG acatgctcctgcacgtatgttagactactgcatcgcgtttctctccccagGGCCAGGGCTGTCCCTAGGGGATACAGCCCTACAAAACTTGCAGCAACTGTTAGATGGTCCTGAAGCGCCAAGGTAGCTGGGCAGAGCTAGCAGAGCGTCTGGGATTGAGAAGCCTGGTGGACACATACAGGAAAACTCCGTCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtaggacagttagacactatgctgaagcctcaatcagctttttccacccc Alignment from Exonerate_protein2genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCC-CAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG acatgctcctgcacgtatgttagactactgcatcgcgtttctctccccagGGCCAGGGCTGTCCCTAGGGGATACAGCCCTACAAAACTTGCAGCAACTGTTAGATGGTCCTGAAGCGCCAAGGTAGCTGGGCAGAGCTAGCAGAGCGTCTGGGATTGAGAAGCCTGGTGGACACATACAGGAAAACTCCGTCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtaggacagttagacactatgctgaagcctcaatcagctttttccacccc Alignment from Exonerate_coding2genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAAGCC-CAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG acatgctcctgcacgtatgttagactactgcatcgcgtttctctccccagGGCCAGGGCTGTCCCTAGGGGATACAGCCCTACAAAACTTGCAGCAACTGTTAGATGGTCCTGAAGCGCCAAGGTAGCTGGGCAGAGCTAGCAGAGCGTCTGGGATTGAGAAGCCTGGTGGACACATACAGGAAAACTCCGTCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtaggacagttagacactatgctgaagcctcaatcagctttttccacccc Alignment from GeneWise GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTGGATGGTCCCGAA-GCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG acatgctcctgcacgtatgttagactactgcatcgcgtttctctccccagGGCCAGGGCTGTCCCTAGGGGATACAGCCCTACAAAACTTGCAGCAACTGTTAGATGGTCCTGAAGCGCCAAGGTAGCTGGGCAGAGCTAGCAGAGCGTCTGGGATTGAGAAGCCTGGTGGACACATACAGGAAAACTCCGTCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtaggacagttagacactatgctgaagcctcaatcagctttttccacccc #### Noc3l_ID7659_16 --> 2 - 1 Original Alignment gtGATGTTTTAAATATT-GACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAg ttggtctccctttcatttaactaaatttgttttttctttctccacttaaggaGATGTTTTGAATATTCGACCCCATGAAATTTTATACCCCTCTATTCCAGACACTGTTTACATTACATGCAggcaagtcattgtggctgaaagcctttttcttcagagtagttgccaatatg Alignment from CESAR gtGATGTTTTAAATATT-GACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAg ttggtctccctttcatttaactaaatttgttttttctttctccacttaaggaGATGTTTTGAATATTCGACCCCATGAAATTTTATACCCCTCTATTCCAGACACTGTTTACATTACATGCAggcaagtcattgtggctgaaagcctttttcttcagagtagttgccaatatg Alignment from Spaln_aa2Genome GTGATGTTTTAAATATT-GACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG ttggtctccctttcatttaactaaatttgttttttctttctccacttaagGAGATGTTTTGAATATTcGACCCCATGAAATTTTATACCCCTCTATTCCAGACACTGTTTACATTACATGCAGgcaagtcattgtggctgaaagcctttttcttcagagtagttgccaatatg Alignment from Spaln_nt2Genome GTGATGTTTTAAATATT-GACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG ttggtctccctttcatttaactaaatttgttttttctttctccacttaagGAGATGTTTTGAATATTCGACCCCATGAAATTTTATACCCCTCTATTCCAGACACTGTTTACATTACATGCAGgcaagtcattgtggctgaaagcctttttcttcagagtagttgccaatatg Alignment from Pairagon GTGATGTTTTAAATATT-GACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG ttggtctccctttcatttaactaaatttgttttttctttctccacttaagGAGATGTTTTGAATATTCGACCCCATGAAATTTTATACCCCTCTATTCCAGACACTGTTTACATTACATGCAGgcaagtcattgtggctgaaagcctttttcttcagagtagttgccaatatg Alignment from Exonerate_protein2genome GTGATGTTTTAAATATT-GACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG ttggtctccctttcatttaactaaatttgttttttctttctccacttaagGAGATGTTTTGAATATTCGACCCCATGAAATTTTATACCCCTCTATTCCAGACACTGTTTACATTACATGCAGgcaagtcattgtggctgaaagcctttttcttcagagtagttgccaatatg Alignment from Exonerate_coding2genome GTGATGTTTTAAATATT-GACCCGATGAAATTCTATACACATCTCTACAAGACACTGTTCACATTACATGCAG ttggtctccctttcatttaactaaatttgttttttctttctccacttaagGAGATGTTTTGAATATTCGACCCCATGAAATTTTATACCCCTCTATTCCAGACACTGTTTACATTACATGCAGgcaagtcattgtggctgaaagcctttttcttcagagtagttgccaatatg Alignment from GeneWise ttggtctccctttcatttaactaaatttgttttttctttctccacttaaggagatgttttgaatattcgaccccatgaaattttatacccctctattccagacactgtttacattacatgcaggcaagtcattgtggctgaaagcctttttcttcagagtagttgccaatatg #### Noc3l_ID7660_15 --> 0 - 1 Original Alignment GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACT-GCTTTTCATATTCTTTCTGGACAAg ggaacagaaagcatgcatttttgttcctatagagcaatttctttccttagGAACTTAGTTATCAAGAAAGTCTCCATTGTGTTCAAACTCGCTTTTCATATTCTTTCTGGACCAggtgggatagtccatttggtctccctttcatttaactaaatttccctcact Alignment from CESAR GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACT-GCTTTTCATATTCTTTCTGGACAAg ggaacagaaagcatgcatttttgttcctatagagcaatttctttccttagGAACTTAGTTATCAAGAAAGTCTCCATTGTGTTCAAACTCGCTTTTCATATTCTTTCTGGACCAggtgggatagtccatttggtctccctttcatttaactaaatttgttttttc Alignment from Spaln_aa2Genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACT-GCTTTTCATATTCTTTCTGGACAAG ggaacagaaagcatgcatttttgttcctatagagcaatttctttccttagGAACTTAGTTATCAAGAAAGTCTCCATTGTGTTCAAACTcGCTTTTCATATTCTTTCTGGACCAGgtgggatagtccatttggtctccctttcatttaactaaatttccctcact Alignment from Spaln_nt2Genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACT-GCTTTTCATATTCTTTCTGGACAAG ggaacagaaagcatgcatttttgttcctatagagcaatttctttccttagGAACTTAGTTATCAAGAAAGTCTCCATTGTGTTCAAACTCGCTTTTCATATTCTTTCTGGACCAGgtgggatagtccatttggtctccctttcatttaactaaatttccctcact Alignment from Pairagon GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACT-GCTTTTCATATTCTTTCTGGACAAGGT------------------------------------------------ ggaacagaaagcatgcatttttgttcctatagagcaatttctttccttagGAACTTAGTTATCAAGAAAGTCTCCATTGTGTTCAAACTCGCTTTTCATATTCTTTCTGGACCAGGTGGGATAGTCCATTTGGTCTCCCTTTCATTTAACTAAATTTCCCTCACT Alignment from Exonerate_protein2genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACT-GCTTTTCATATTCTTTCTGGACAAG ggaacagaaagcatgcatttttgttcctatagagcaatttctttccttagGAACTTAGTTATCAAGAAAGTCTCCATTGTGTTCAAACTCGCTTTTCATATTCTTTCTGGACCAGgtgggatagtccatttggtctccctttcatttaactaaatttccctcact Alignment from Exonerate_coding2genome GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACT-GCTTTTCATATTCTTTCTGGACAAG ggaacagaaagcatgcatttttgttcctatagagcaatttctttccttagGAACTTAGTTATCAAGAAAGTCTCCATTGTGTTCAAACTCGCTTTTCATATTCTTTCTGGACCAGgtgggatagtccatttggtctccctttcatttaactaaatttccctcact Alignment from GeneWise GAGCTAAGTTATCAAGAAAGTCTCCACTGTGTTCAAACT-GCTTTTCATATTCTTTCTGGACAAG ggaacagaaagcatgcatttttgttcctatagagcaatttctttccttagGAACTTAGTTATCAAGAAAGTCTCCATTGTGTTCAAACTCGCTTTTCATATTCTTTCTGGACCAGgtgggatagtccatttggtctccctttcatttaactaaatttccctcact #### Npm3_ID9576_4 --> 0 - 1 Original Alignment CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGT-TCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCg attcaagggtgcaagccaatggtactcagtcctgccattgcctcccacagCTCAGTGTGGATGATCTACAACTCCAACCACCAGTTTCCTTTCGATTAAGGTCAGGTCTCAGGGCCAGTTCGAATC---------CATCAGATTggtgataggggagaatgtctcagatcctggtgtggcctgcattccagacta Alignment from CESAR CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGT-TCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCg attcaagggtgcaagccaatggtactcagtcctgccattgcctcccacagCTCAGTGTGGATGATCTACAACTCCAACCACCAGTTTCCTTTCGATTAAGGTCAGGTCTCAGGGCCAGTTCGAATC---------CATCAGATTggtgataggggagaatgtctcagatcctggtgtggcctgcattccagacta Alignment from Spaln_aa2Genome CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGT-TCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG attcaagggtgcaagccaatggtactcagtcctgccattgcctcccacagCTCAGTGTGGATGATCTACAACTCCAACCACCAGTTTCCTTTCGATTAAGGTCAGGTcTCAGGGCCAGTTCGAATC---------CATCAGATTGgtgataggggagaatgtctcagatcctggtgtggcctgcattccagacta Alignment from Spaln_nt2Genome CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGT-TCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG attcaagggtgcaagccaatggtactcagtcctgccattgcctcccacagCTCAGTGTGGATGATCTACAACTCCAACCACCAGTTTCCTTTCGATTAAGGTCAGGTCTCAGGGCCAGTTCGAATC---------CATCAGATTGgtgataggggagaatgtctcagatcctggtgtggcctgcattccagacta Alignment from Pairagon CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGT-TCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG attcaagggtgcaagccaatggtactcagtcctgccattgcctcccacagCTCAGTGTGGATGATCTACAACTCCAACCACCAGTTTCCTTTCGATTAAGGTCAGGTCTCAGGGCCAGTTCGAATC---------CATCAGATTGgtgataggggagaatgtctcagatcctggtgtggcctgcattccagacta Alignment from Exonerate_protein2genome CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGT-TCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG attcaagggtgcaagccaatggtactcagtcctgccattgcctcccacagCTCAGTGTGGATGATCTACAACTCCAACCACCAGTTTCCTTTCGATTAAGGTCAGGTCTCAGGGCCAGTTCGAATC---------CATCAGATTGgtgataggggagaatgtctcagatcctggtgtggcctgcattccagacta Alignment from Exonerate_coding2genome CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGT-TCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG attcaagggtgcaagccaatggtactcagtcctgccattgcctcccacagCTCAGTGTGGATGATCTACAACTCCAACCACCAGTTTCCTTTCGATTAAGGTCAGGTCTCAGGGCCAGTTCGAATC---------CATCAGATTGgtgataggggagaatgtctcagatcctggtgtggcctgcattccagacta Alignment from GeneWise CTCAGTGTGGATGATTTCCAACTCCAACCACCTGTCACCTTCCGCCTGAAGTCCGGT-TCTGGCCCAGTTCGGATCACTGGCCGGCATCAGATCG attcaagggtgcaagccaatggtactcagtcctgccattgcctcccacagCTCAGTGTGGATGATCTACAACTCCAACCACCAGTTTCCTTTCGATTAAGGTCAGGTCTCAGGGCCAGTTCGAATC---------CATCAGATTGgtgataggggagaatgtctcagatcctggtgtggcctgcattccagacta #### Npm3_ID9577_3 --> 0 - 0 Original Alignment CTGTGCCTTACCGAGGGGGCCACGGAC-GAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tttccgcagccaatcatccccaaaggcagatcatcttttgcttcctgcagCTCTGCCTTACTGAGGCAGCCACAGATCGAGTGTAATGTGATAGAAGTTGTGGCCCGGGACTATGATAACCAGGAAATTGCGGTTCCTGTTGCAAACCTCAGGCTGTCTTGTCAGCCGATGgtatgtttgagccattcatttctgttgagccctaacaggattaataactt Alignment from CESAR CTGTGCCTTACCGAGGGGGCCACGGAC-GAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tttccgcagccaatcatccccaaaggcagatcatcttttgcttcctgcagCTCTGCCTTACTGAGGCAGCCACAGATCGAGTGTAATGTGATAGAAGTTGTGGCCCGGGACTATGATAACCAGGAAATTGCGGTTCCTGTTGCAAACCTCAGGCTGTCTTGTCAGCCGATGgtatgtttgagccattcatttctgttgagccctaacaggattaataactt Alignment from Spaln_aa2Genome GCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tttccgcagccaatcatccccaaaggcagatcatcttttgcttcctgcagctctgccttactgaggcagCCACAGATCGAGTGTAATGTGATAGAAGTTGTGGCCCGGGACTATGATAACCAGGAAATTGCGGTTCCTGTTGCAAACCTCAGGCTGTCTTGTCAGCCGATGgtatgtttgagccattcatttctgttgagccctaacaggattaataactt Alignment from Spaln_nt2Genome CTGTGCCTTACCGAGGGGGCCACGGA-CGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tttccgcagccaatcatccccaaaggcagatcatcttttgcttcctgcagCTCTGCCTTACTGAGGCAGCCACAGATCGAGTGTAATGTGATAGAAGTTGTGGCCCGGGACTATGATAACCAGGAAATTGCGGTTCCTGTTGCAAACCTCAGGCTGTCTTGTCAGCCGATGgtatgtttgagccattcatttctgttgagccctaacaggattaataactt Alignment from Pairagon CTGTGCCTTACCGAGGGGGCCACGGA-CGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tttccgcagccaatcatccccaaaggcagatcatcttttgcttcctgcagCTCTGCCTTACTGAGGCAGCCACAGATCGAGTGTAATGTGATAGAAGTTGTGGCCCGGGACTATGATAACCAGGAAATTGCGGTTCCTGTTGCAAACCTCAGGCTGTCTTGTCAGCCGATGgtatgtttgagccattcatttctgttgagccctaacaggattaataactt Alignment from Exonerate_protein2genome CTGTGCCTTACCGAGGGGGCCACGGAC-GAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tttccgcagccaatcatccccaaaggcagatcatcttttgcttcctgcagCTCTGCCTTACTGAGGCAGCCACAGATCGAGTGTAATGTGATAGAAGTTGTGGCCCGGGACTATGATAACCAGGAAATTGCGGTTCCTGTTGCAAACCTCAGGCTGTCTTGTCAGCCGATGgtatgtttgagccattcatttctgttgagccctaacaggattaataactt Alignment from Exonerate_coding2genome CTGTGCCTTACCGAGGGGGCCACGGAC-GAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tttccgcagccaatcatccccaaaggcagatcatcttttgcttcctgcagCTCTGCCTTACTGAGGCAGCCACAGATCGAGTGTAATGTGATAGAAGTTGTGGCCCGGGACTATGATAACCAGGAAATTGCGGTTCCTGTTGCAAACCTCAGGCTGTCTTGTCAGCCGATGgtatgtttgagccattcatttctgttgagccctaacaggattaataactt Alignment from GeneWise GCCACGGACGAGTGTAATGTGGTGGAAGTTGTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tttccgcagccaatcatccccaaaggcagatcatcttttgcttcctgcagctctgccttactgaggcagCCACAGATCGAGTGTAATGTGATAGAAGTTGTGGCCCGGGACTATGATAACCAGGAAATTGCGGTTCCTGTTGCAAACCTCAGGCTGTCTTGTCAGCCGATGgtatgtttgagccattcatttctgttgagccctaacaggattaataactt #### Npm3_ID9578_2 --> 2 - 0 Original Alignment gtTGTGAGCTCTCCGGCCAC-ACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG actttaaccttcacatgtgtacctaggctcatgctttctctacctcccaggtTGTGAGCTCTCTGATCACCACACGCTCCTTCACTTTCAAGGTTGCAGAGGAAGATGACACAGAGCAGGTGCTGGCATTGAACATGgtgagcgttacagaaggagtttgagatcaggcacacctgtggtcttatct Alignment from CESAR gtTGTGAGCTCTCCGGCCAC-ACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG actttaaccttcacatgtgtacctaggctcatgctttctctacctcccaggtTGTGAGCTCTCTGATCACCACACGCTCCTTCACTTTCAAGGTTGCAGAGGAAGATGACACAGAGCAGGTGCTGGCATTGAACATGgtgagcgttacagaaggagtttgagatcaggcacacctgtggtcttatct Alignment from Spaln_aa2Genome GTTGTGAGCTCTCCGGCCAC-ACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG actttaaccttcacatgtgtacctaggctcatgctttctctacctcccagGTTGTGAGCTCTCTGATCACcACACGCTCCTTCACTTTCAAGGTTGCAGAGGAAGATGACACAGAGCAGGTGCTGGCATTGAACATGgtgagcgttacagaaggagtttgagatcaggcacacctgtggtcttatct Alignment from Spaln_nt2Genome GTTGTGAGCTCTCCGGCCAC-ACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG actttaaccttcacatgtgtacctaggctcatgctttctctacctcccagGTTGTGAGCTCTCTGATCACCACACGCTCCTTCACTTTCAAGGTTGCAGAGGAAGATGACACAGAGCAGGTGCTGGCATTGAACATGgtgagcgttacagaaggagtttgagatcaggcacacctgtggtcttatct Alignment from Pairagon GTTGTGAGCTCTCCGGCCA-CACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG actttaaccttcacatgtgtacctaggctcatgctttctctacctcccagGTTGTGAGCTCTCTGATCACCACACGCTCCTTCACTTTCAAGGTTGCAGAGGAAGATGACACAGAGCAGGTGCTGGCATTGAACATGgtgagcgttacagaaggagtttgagatcaggcacacctgtggtcttatct Alignment from Exonerate_protein2genome GTTGTGAGCTCTCCGGCCAC-ACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG actttaaccttcacatgtgtacctaggctcatgctttctctacctcccagGTTGTGAGCTCTCTGATCACCACACGCTCCTTCACTTTCAAGGTTGCAGAGGAAGATGACACAGAGCAGGTGCTGGCATTGAACATGgtgagcgttacagaaggagtttgagatcaggcacacctgtggtcttatct Alignment from Exonerate_coding2genome GTTGTGAGCTCTCCGGCCAC-ACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG actttaaccttcacatgtgtacctaggctcatgctttctctacctcccagGTTGTGAGCTCTCTGATCACCACACGCTCCTTCACTTTCAAGGTTGCAGAGGAAGATGACACAGAGCAGGTGCTGGCATTGAACATGgtgagcgttacagaaggagtttgagatcaggcacacctgtggtcttatct Alignment from GeneWise TGAGCTCTCCGGCCACACCCGCTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG actttaaccttcacatgtgtacctaggctcatgctttctctacctcccaggttgtgagCTCTCTGATC---ACCACACGCTCCTTCACTTTCAAGGTTGCAGAGGAAGATGACACAGAGCAGGTGCTGGCATTGAACATGgtgagcgttacagaaggagtttgagatcaggcacacctgtggtcttatct #### Nt5c2_ID10036_17 --> 0 - 0 Original Alignment AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTC-CGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG tttattgcagaggctttgacatagttgcaccctgtcctctttctcccaagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCCGCAGTAGCTCCCAGCAGACACTCTTTGCCAGCCTGGTTATGCGCTATGCAGACCTCTATGCAGCCTCATTCATCAACCTGCTGTACTACCCGTTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtaagtaatgttcctcacaactgacagttgactgaatgccatagttgcta Alignment from CESAR AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTC-CGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG tttattgcagaggctttgacatagttgcaccctgtcctctttctcccaagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCCGCAGTAGCTCCCAGCAGACACTCTTTGCCAGCCTGGTTATGCGCTATGCAGACCTCTATGCAGCCTCATTCATCAACCTGCTGTACTACCCGTTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtaagtaatgttcctcacaactgacagttgactgaatgccatagttgcta Alignment from Spaln_aa2Genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTC-CGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG tttattgcagaggctttgacatagttgcaccctgtcctctttctcccaagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCcCGCAGTAGCTCCCAGCAGACACTCTTTGCCAGCCTGGTTATGCGCTATGCAGACCTCTATGCAGCCTCATTCATCAACCTGCTGTACTACCCGTTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtaagtaatgttcctcacaactgacagttgactgaatgccatagttgcta Alignment from Spaln_nt2Genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCC-GCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG tttattgcagaggctttgacatagttgcaccctgtcctctttctcccaagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCCGCAGTAGCTCCCAGCAGACACTCTTTGCCAGCCTGGTTATGCGCTATGCAGACCTCTATGCAGCCTCATTCATCAACCTGCTGTACTACCCGTTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtaagtaatgttcctcacaactgacagttgactgaatgccatagttgcta Alignment from Pairagon AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTT-CCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG tttattgcagaggctttgacatagttgcaccctgtcctctttctcccaagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCCGCAGTAGCTCCCAGCAGACACTCTTTGCCAGCCTGGTTATGCGCTATGCAGACCTCTATGCAGCCTCATTCATCAACCTGCTGTACTACCCGTTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtaagtaatgttcctcacaactgacagttgactgaatgccatagttgcta Alignment from Exonerate_protein2genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTC-CGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG tttattgcagaggctttgacatagttgcaccctgtcctctttctcccaagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCCGCAGTAGCTCCCAGCAGACACTCTTTGCCAGCCTGGTTATGCGCTATGCAGACCTCTATGCAGCCTCATTCATCAACCTGCTGTACTACCCGTTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtaagtaatgttcctcacaactgacagttgactgaatgccatagttgcta Alignment from Exonerate_coding2genome GAAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTC-CGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG tttattgcagaggctttgacatagttgcaccctgtcctctttctcccaaGGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCCGCAGTAGCTCCCAGCAGACACTCTTTGCCAGCCTGGTTATGCGCTATGCAGACCTCTATGCAGCCTCATTCATCAACCTGCTGTACTACCCGTTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtaagtaatgttcctcacaactgacagttgactgaatgccatagttgcta Alignment from GeneWise AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTC-CGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG tttattgcagaggctttgacatagttgcaccctgtcctctttctcccaagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCCGCAGTAGCTCCCAGCAGACACTCTTTGCCAGCCTGGTTATGCGCTATGCAGACCTCTATGCAGCCTCATTCATCAACCTGCTGTACTACCCGTTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtaagtaatgttcctcacaactgacagttgactgaatgccatagttgcta #### Nt5c2_ID10041_12 --> 0 - 0 Original Alignment CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGAT-GCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT aagaatttctggcttccatgagtccagactgtctgcctttttctactcagCCTGGGAGCTCGCACCGGCCATGGCAGTCCTACTTTGACCTGATTCTG---GATCGCTCGGAAACCACTCTTTTTTGGAGAAGGAACAGTGCTGCGTCAGGTTGACACTgtaagcgtgaacaaaatgtattcaatggtcatgatccctcatcctcacac Alignment from CESAR CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGAT-GCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT aagaatttctggcttccatgagtccagactgtctgcctttttctactcagCCTGGGAGCTCGCACCGGCCATGGCAGTCCTACTTTGACCTGATTCTG---GATCGCTCGGAAACCACTCTTTTTTGGAGAAGGAACAGTGCTGCGTCAGGTTGACACTgtaagcgtgaacaaaatgtattcaatggtcatgatccctcatcctcacac Alignment from Spaln_aa2Genome CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT aagaatttctggcttccatgagtccagactgtctgcctttttctactcagCCTGGGAGCTCGCACCGGCCATGGCAGTCCTACTTTGACCTGATTCTGGATC--GCTCGGAAACCACTCTTTTTTGGAGAAGGAACAGTGCTGCGTCAGGTTGACACTgtaagcgtgaacaaaatgtattcaatggtcatgatccctcatcctcacac Alignment from Spaln_nt2Genome CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGAT-GCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT aagaatttctggcttccatgagtccagactgtctgcctttttctactcagCCTGGGAGCTCGCACCGGCCATGGCAGTCCTACTTTGACCTGATT---CTGGATCGCTCGGAAACCACTCTTTTTTGGAGAAGGAACAGTGCTGCGTCAGGTTGACACTgtaagcgtgaacaaaatgtattcaatggtcatgatccctcatcctcacac Alignment from Pairagon CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGAT-GCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT aagaatttctggcttccatgagtccagactgtctgcctttttctactcagCCTGGGAGCTCGCACCGGCCATGGCAGTCCTACTTTGACCTGATTC---TGGATCGCTCGGAAACCACTCTTTTTTGGAGAAGGAACAGTGCTGCGTCAGGTTGACACTgtaagcgtgaacaaaatgtattcaatggtcatgatccctcatcctcacac Alignment from Exonerate_protein2genome CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGAT-GCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT aagaatttctggcttccatgagtccagactgtctgcctttttctactcagCCTGGGAGCTCGCACCGGCCATGGCAGTCCTACTTTGACCTGATTCTG---GATCGCTCGGAAACCACTCTTTTTTGGAGAAGGAACAGTGCTGCGTCAGGTTGACACTgtaagcgtgaacaaaatgtattcaatggtcatgatccctcatcctcacac Alignment from Exonerate_coding2genome CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGAT-GCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT aagaatttctggcttccatgagtccagactgtctgcctttttctactcagCCTGGGAGCTCGCACCGGCCATGGCAGTCCTACTTTGACCTGATTCTG---GATCGCTCGGAAACCACTCTTTTTTGGAGAAGGAACAGTGCTGCGTCAGGTTGACACTgtaagcgtgaacaaaatgtattcaatggtcatgatccctcatcctcacac Alignment from GeneWise CCCGGGAGCTCCCACCGGCCGTGGCAGTCCTACTTTGACCTGATTTTGGTGGATGCTCGGAAACCACTCTTTTTTGGAGAAGGCACAGTGCTGCGTCAGGTGGACACT aagaatttctggcttccatgagtccagactgtctgcctttttctactcagCCTGGGAGCTCGCACCGGCCATGGCAGTCCTACTTTGACCTGATTCTGGATC--GCTCGGAAACCACTCTTTTTTGGAGAAGGAACAGTGCTGCGTCAGGTTGACACTgtaagcgtgaacaaaatgtattcaatggtcatgatccctcatcctcacac #### Nt5c2_ID10046_7 --> 2 - 2 Original Alignment agACCTACCTGTTGGCC-TGCCTCGTAGATTTTTTTACTAATTGTCCCAGATACACCag gtgaagtggtctgcttgtgttgttaccatctgccactgaattgtccccagagACTCACCTGTTGGCCCTGCCTTGTAGATTTTTTTACTAACTGTCCCAGATACACCaggtgagcttatattatacttcactacagctaatgtgtggagttttatggag Alignment from CESAR agACCTACCTGTTGGCC-TGCCTCGTAGATTTTTTTACTAATTGTCCCAGATACACCag gtgaagtggtctgcttgtgttgttaccatctgccactgaattgtccccagagACTCACCTGTTGGCCCTGCCTTGTAGATTTTTTTACTAACTGTCCCAGATACACCaggtgagcttatattatacttcactacagctaatgtgtggagttttatggag Alignment from Spaln_aa2Genome AGACCTACCTGTTGGCC-TGCCTCGTAGATTTTTTTACTAATTGTCCCAGATACACCAG gtgaagtggtctgcttgtgttgttaccatctgccactgaattgtccccagAGACTCACCTGTTGGCCcTGCCTTGTAGATTTTTTTACTAACTGTCCCAGATACACCAGgtgagcttatattatacttcactacagctaatgtgtggagttttatggag Alignment from Spaln_nt2Genome AGACCTACCTGTTGGCC-TGCCTCGTAGATTTTTTTACTAATTGTCCCAGATACACCAG gtgaagtggtctgcttgtgttgttaccatctgccactgaattgtccccagAGACTCACCTGTTGGCCCTGCCTTGTAGATTTTTTTACTAACTGTCCCAGATACACCAGgtgagcttatattatacttcactacagctaatgtgtggagttttatggag Alignment from Pairagon AGACCTACCTGTTGG-CCTGCCTCGTAGATTTTTTTACTAATTGTCCCAGATACACCAG gtgaagtggtctgcttgtgttgttaccatctgccactgaattgtccccagAGACTCACCTGTTGGCCCTGCCTTGTAGATTTTTTTACTAACTGTCCCAGATACACCAGgtgagcttatattatacttcactacagctaatgtgtggagttttatggag Alignment from Exonerate_protein2genome AGACCTACCTGTTGGCC-TGCCTCGTAGATTTTTTTACTAATTGTCCCAGATACACCAG gtgaagtggtctgcttgtgttgttaccatctgccactgaattgtccccagAGACTCACCTGTTGGCCCTGCCTTGTAGATTTTTTTACTAACTGTCCCAGATACACCAGgtgagcttatattatacttcactacagctaatgtgtggagttttatggag Alignment from Exonerate_coding2genome AGACCTACCTGTTGGCC-TGCCTCGTAGATTTTTTTACTAATTGTCCCAGATACACCAG gtgaagtggtctgcttgtgttgttaccatctgccactgaattgtccccagAGACTCACCTGTTGGCCCTGCCTTGTAGATTTTTTTACTAACTGTCCCAGATACACCAGgtgagcttatattatacttcactacagctaatgtgtggagttttatggag Alignment from GeneWise -ACCTACCTGTTGGCCTGCCTCGTAGATTTTTTTACTAATTGTCCCAGATACACCAG gtgaagtggtctgcttgtgttgttaccatctgccactgaattgtccccagagACTCACCTGTTGGCCCTGCCTTGTAGATTTTTTTACTAACTGTCCCAGATACACCAGgtgagcttatattatacttcactacagctaatgtgtggagttttatggag #### Nudt8_ID267_2 --> 1 - 0 Original Alignment tTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGG-GGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctagctgtggtcccctcctgtttctgccttcttcagtTTCCCAGGTGGTAAGTGCGATCCTGATGACCGAGATGTGGTAATACACACTGCCCTTCAGGAGACACAGGAGGAACTAGACTTG---GTACCCAAGGAGCATGTTTGGCGGGGTGCTGCAACCAGTGTATGACCGGgtgaggtttttacactcccatagcacaaccctatcgtccagatgactgag Alignment from CESAR tTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGG-GGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctagctgtggtcccctcctgtttctgccttcttcagtTTCCCAGGTGGTAAGTGCGATCCTGATGACCGAGATGTGGTAATACACACTGCCCTTCAGGAGACACAGGAGGAACTAGACTTG---GTACCCAAGGAGCATGTTTGGCGGGGTGCTGCAACCAGTGTATGACCGGgtgaggtttttacactcccatagcacaaccctatcgtccagatgactgag Alignment from Spaln_aa2Genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGG-GGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctagctgtggtcccctcctgtttctgccttcttcagTTTCCCAGGTGGTAAGTGCGATCCTGATGACCGAGATGTGGTAATACACACTGCCCTTCAGGAGACACAGGAGGAACTAGACTTGGTACCCAAGGAGCATGTTTGGcGGGGTGCTGCAACCAGTGTATGACCGGgtgaggtttttacactcccatagcacaaccctatcgtccagatgactgag Alignment from Spaln_nt2Genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGG-GGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctagctgtggtcccctcctgtttctgccttcttcagTTTCCCAGGTGGTAAGTGCGATCCTGATGACCGAGATGTGGTAATACACACTGCCCTTCAGGAGACACAGGAGGAACTAGACTT---GGTACCCAAGGAGCATGTTTGGCGGGGTGCTGCAACCAGTGTATGACCGGgtgaggtttttacactcccatagcacaaccctatcgtccagatgactgag Alignment from Pairagon TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGG-GGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctagctgtggtcccctcctgtttctgccttcttcagTTTCCCAGGTGGTAAGTGCGATCCTGATGACCGAGATGTGGTAATACACACTGCCCTTCAGGAGACACAGGAGGAACTAGACTT---GGTACCCAAGGAGCATGTTTGGCGGGGTGCTGCAACCAGTGTATGACCGGgtgaggtttttacactcccatagcacaaccctatcgtccagatgactgag Alignment from Exonerate_protein2genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGG-GGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctagctgtggtcccctcctgtttctgccttcttcagTTTCCCAGGTGGTAAGTGCGATCCTGATGACCGAGATGTGGTAATACACACTGCCCTTCAGGAGACACAGGAGGAACTAGACTTG---GTACCCAAGGAGCATGTTTGGCGGGGTGCTGCAACCAGTGTATGACCGGgtgaggtttttacactcccatagcacaaccctatcgtccagatgactgag Alignment from Exonerate_coding2genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGG-GGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctagctgtggtcccctcctgtttctgccttcttcagTTTCCCAGGTGGTAAGTGCGATCCTGATGACCGAGATGTGGTAATACACACTGCCCTTCAGGAGACACAGGAGGAACTAGACTTG---GTACCCAAGGAGCATGTTTGGCGGGGTGCTGCAACCAGTGTATGACCGGgtgaggtttttacactcccatagcacaaccctatcgtccagatgactgag Alignment from GeneWise TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGG-GGTGTCCTGCAGCCAGTGTATGACCGG taaactttataaacctagctgtggtcccctcctgtttctgccttcttcagTTTCCCAGGTGGTAAGTGCGATCCTGATGACCGAGATGTGGTAATACACACTGCCCTTCAGGAGACACAGGAGGAACTAGACTTG---GTACCCAAGGAGCATGTTTGGCGGGGTGCTGCAACCAGTGTATGACCGGgtgaggtttttacactcccatagcacaaccctatcgtccagatgactgag #### Nxf1_ID2345_5 --> 0 - 0 Original Alignment TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCT-TCTGCATTAAAGGGTGTCAACCATAAGATC---CAGGATCGAGAAAACAGAAGG gagcagatgattatggatgtggactacaactgatggctctctgtgttcagTTTCACTATGAAAATACACGTGCTCATTTCTTTGTGGAGGATGCAACTACTGGTCTCCACATTAAAAGGTGTAAACCATAAGATCATCCAGGATCGAGAGAACAGACGGgtaactagacaccattaaaatggactagttgttacaactgttttttacat Alignment from CESAR TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACT-GCTTCTGCATTAAAGGGTGTCAACCATAAG---ATCCAGGATCGAGAAAACAGAAGG gagcagatgattatggatgtggactacaactgatggctctctgtgttcagTTTCACTATGAAAATACACGTGCTCATTTCTTTGTGGAGGATGCAACTACTGGTCTCCACATTAAAAGGTGTAAACCATAAGATCATCCAGGATCGAGAGAACAGACGGgtaactagacaccattaaaatggactagttgttacaactgttttttacat Alignment from Spaln_aa2Genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACT-GCTTCTGCATTAAAGGGTGTCAACCATAAG---ATCCAGGATCGAGAAAACAGAAGG gagcagatgattatggatgtggactacaactgatggctctctgtgttcagTTTCACTATGAAAATACACGTGCTCATTTCTTTGTGGAGGATGCAACTACTgGTCTCCACATTAAAAGGTGTAAACCATAAGATCATCCAGGATCGAGAGAACAGACGGgtaactagacaccattaaaatggactagttgttacaactgttttttacat Alignment from Spaln_nt2Genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCT-TCTGCATTAAAGGGTGTCAACCATAAG---ATCCAGGATCGAGAAAACAGAAGG gagcagatgattatggatgtggactacaactgatggctctctgtgttcagTTTCACTATGAAAATACACGTGCTCATTTCTTTGTGGAGGATGCAACTACTGGTCTCCACATTAAAAGGTGTAAACCATAAGATCATCCAGGATCGAGAGAACAGACGGgtaactagacaccattaaaatggactagttgttacaactgttttttacat Alignment from Pairagon TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCT-TCTGCATTAAAGGGTGTCAACCATAAG---ATCCAGGATCGAGAAAACAGAAGG gagcagatgattatggatgtggactacaactgatggctctctgtgttcagTTTCACTATGAAAATACACGTGCTCATTTCTTTGTGGAGGATGCAACTACTGGTCTCCACATTAAAAGGTGTAAACCATAAGATCATCCAGGATCGAGAGAACAGACGGgtaactagacaccattaaaatggactagttgttacaactgttttttacat Alignment from Exonerate_protein2genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACT-GCTTCTGCATTAAAGGGTGTCAACCATAAG---ATCCAGGATCGAGAAAACAGAAGG gagcagatgattatggatgtggactacaactgatggctctctgtgttcagTTTCACTATGAAAATACACGTGCTCATTTCTTTGTGGAGGATGCAACTACTGGTCTCCACATTAAAAGGTGTAAACCATAAGATCATCCAGGATCGAGAGAACAGACGGgtaactagacaccattaaaatggactagttgttacaactgttttttacat Alignment from Exonerate_coding2genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACT-GCTTCTGCATTAAAGGGTGTCAACCATAAG---ATCCAGGATCGAGAAAACAGAAGG gagcagatgattatggatgtggactacaactgatggctctctgtgttcagTTTCACTATGAAAATACACGTGCTCATTTCTTTGTGGAGGATGCAACTACTGGTCTCCACATTAAAAGGTGTAAACCATAAGATCATCCAGGATCGAGAGAACAGACGGgtaactagacaccattaaaatggactagttgttacaactgttttttacat Alignment from GeneWise TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACT-GCTTCTGCATTAAAGGGTGTCAACCATAAGATC---CAGGATCGAGAAAACAGAAGG gagcagatgattatggatgtggactacaactgatggctctctgtgttcagTTTCACTATGAAAATACACGTGCTCATTTCTTTGTGGAGGATGCAACTACTGGTCTCCACATTAAAAGGTGTAAACCATAAGATCATCCAGGATCGAGAGAACAGACGGgtaactagacaccattaaaatggactagttgttacaactgttttttacat #### Nxf1_ID2346_6 --> 0 - 0 Original Alignment ATATCTATCATC-ATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG ttttttacattgtagccagttgtcttgtaccaatttctgttcccttgcagATATCAATCATCCATTAATACATCTGCTCCACCCTACACTGTGCAGAACGAACTAAAGGCTGAACAAATAGAGCAGCTCAAGgtaagtatgggtctagtctgaggccctcaacccacatcagagttatctaa Alignment from CESAR ATATCTATCATC-ATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG ttttttacattgtagccagttgtcttgtaccaatttctgttcccttgcagATATCAATCATCCATTAATACATCTGCTCCACCCTACACTGTGCAGAACGAACTAAAGGCTGAACAAATAGAGCAGCTCAAGgtaagtatgggtctagtctgaggccctcaacccacatcagagttatctaa Alignment from Spaln_aa2Genome ATATCTATCATC-ATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG ttttttacattgtagccagttgtcttgtaccaatttctgttcccttgcagATATCAATCATCcATTAATACATCTGCTCCACCCTACACTGTGCAGAACGAACTAAAGGCTGAACAAATAGAGCAGCTCAAGgtaagtatgggtctagtctgaggccctcaacccacatcagagttatctaa Alignment from Spaln_nt2Genome ATATCTATCATC-ATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG ttttttacattgtagccagttgtcttgtaccaatttctgttcccttgcagATATCAATCATCCATTAATACATCTGCTCCACCCTACACTGTGCAGAACGAACTAAAGGCTGAACAAATAGAGCAGCTCAAGgtaagtatgggtctagtctgaggccctcaacccacatcagagttatctaa Alignment from Pairagon ATATCTATCAT-CATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG ttttttacattgtagccagttgtcttgtaccaatttctgttcccttgcagATATCAATCATCCATTAATACATCTGCTCCACCCTACACTGTGCAGAACGAACTAAAGGCTGAACAAATAGAGCAGCTCAAGgtaagtatgggtctagtctgaggccctcaacccacatcagagttatctaa Alignment from Exonerate_protein2genome ATATCTATCATC-ATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG ttttttacattgtagccagttgtcttgtaccaatttctgttcccttgcagATATCAATCATCCATTAATACATCTGCTCCACCCTACACTGTGCAGAACGAACTAAAGGCTGAACAAATAGAGCAGCTCAAGgtaagtatgggtctagtctgaggccctcaacccacatcagagttatctaa Alignment from Exonerate_coding2genome ATATCTATCATC-ATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG ttttttacattgtagccagttgtcttgtaccaatttctgttcccttgcagATATCAATCATCCATTAATACATCTGCTCCACCCTACACTGTGCAGAACGAACTAAAGGCTGAACAAATAGAGCAGCTCAAGgtaagtatgggtctagtctgaggccctcaacccacatcagagttatctaa Alignment from GeneWise CTATCATC------------------------------------ATCAATGCTTCTGCTCCACCCTACACTGTACAGAATGAACTGAAGCCCGAACAAATAGAGCAGCTCAAG ttttttacattgtagccagTTGTCTTGTACCAATTTCTGTTCCCTTGCAGATATCAATCATCCATTAATACATCTGCTCCACCCTACACTGTGCAGAACGAACTAAAGGCTGAACAAATAGAGCAGCTCAAGgtaagtatgggtctagtctgaggccctcaacccacatcagagttatctaa #### Nxf1_ID2347_7 --> 0 - 1 Original Alignment CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGAC-CTCAAGGGGCTCCGCTCAGACCCAg ccctcaacccacatcagagttatctaaattttaccctctggttcctacagCTTGTCATGAGCAAACAATATGACAGTAATCAGCAAGCACTTGACCCTTAAGGAGCTTCGCTCAGACCCAggtaagccaagcctcagtagatcagagttattgaggcgggaaggctgggtc Alignment from CESAR CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGAC-CTCAAGGGGCTCCGCTCAGACCCAg ccctcaacccacatcagagttatctaaattttaccctctggttcctacagCTTGTCATGAGCAAACAATATGACAGTAATCAGCAAGCACTTGACCCTTAAGGAGCTTCGCTCAGACCCAggtaagccaagcctcagtagatcagagttattgaggcgggaaggctgggtc Alignment from Spaln_aa2Genome CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGAC-CTCAAGGGGCTCCGCTCAGACCCAG ccctcaacccacatcagagttatctaaattttaccctctggttcctacagCTTGTCATGAGCAAACAATATGACAGTAATCAGCAAGCACTTGACcCTTAAGGAGCTTCGCTCAGACCCAGgtaagccaagcctcagtagatcagagttattgaggcgggaaggctgggtc Alignment from Spaln_nt2Genome CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGA-CCTCAAGGGGCTCCGCTCAGACCCAG ccctcaacccacatcagagttatctaaattttaccctctggttcctacagCTTGTCATGAGCAAACAATATGACAGTAATCAGCAAGCACTTGACCCTTAAGGAGCTTCGCTCAGACCCAGgtaagccaagcctcagtagatcagagttattgaggcgggaaggctgggtc Alignment from Pairagon CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGA-CCTCAAGGGGCTCCGCTCAGACCCAG ccctcaacccacatcagagttatctaaattttaccctctggttcctacagCTTGTCATGAGCAAACAATATGACAGTAATCAGCAAGCACTTGACCCTTAAGGAGCTTCGCTCAGACCCAGgtaagccaagcctcagtagatcagagttattgaggcgggaaggctgggtc Alignment from Exonerate_protein2genome CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGAC-CTCAAGGGGCTCCGCTCAGACCCAG ccctcaacccacatcagagttatctaaattttaccctctggttcctacagCTTGTCATGAGCAAACAATATGACAGTAATCAGCAAGCACTTGACCCTTAAGGAGCTTCGCTCAGACCCAGgtaagccaagcctcagtagatcagagttattgaggcgggaaggctgggtc Alignment from Exonerate_coding2genome CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGAC-CTCAAGGGGCTCCGCTCAGACCCAG ccctcaacccacatcagagttatctaaattttaccctctggttcctacagCTTGTCATGAGCAAACAATATGACAGTAATCAGCAAGCACTTGACCCTTAAGGAGCTTCGCTCAGACCCAGgtaagccaagcctcagtagatcagagttattgaggcgggaaggctgggtc Alignment from GeneWise CTGATCATGAGCAAACGATATGATGGCAACCAACAAGCACTTGAC-CTCAAGGGGCTCCGCTCAGACCCAG ccctcaacccacatcagagttatctaaattttaccctctggttcctacagCTTGTCATGAGCAAACAATATGACAGTAATCAGCAAGCACTTGACCCTTAAGGAGCTTCGCTCAGACCCAGgtaagccaagcctcagtagatcagagttattgaggcgggaaggctgggtc #### Nxf1_ID2352_12 --> 0 - 0 Original Alignment GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTA-CCACCCTGCAAG ctcaacaaacccagttcatatcaagtttcctcttccttgccttgtgccagGATGGCCATGAGCTACCCCCTCCAATTTCTTTTGATGTTGAAGCTCCTACAATGTTACCCACCCTGTAAGgtaagtgttgggttcaccttagaaatttgatagaagagatcactggtcct Alignment from CESAR GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTA-CCACCCTGCAAG ctcaacaaacccagttcatatcaagtttcctcttccttgccttgtgccagGATGGCCATGAGCTACCCCCTCCAATTTCTTTTGATGTTGAAGCTCCTACAATGTTACCCACCCTGTAAGgtaagtgttgggttcaccttagaaatttgatagaagagatcactggtcct Alignment from Spaln_aa2Genome GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCA-CCCTGCAAG ctcaacaaacccagttcatatcaagtttcctcttccttgccttgtgccagGATGGCCATGAGCTACCCCCTCCAATTTCTTTTGATGTTGAAGCTCCTACAATGTTACCCaCCCTGTAAGgtaagtgttgggttcaccttagaaatttgatagaagagatcactggtcct Alignment from Spaln_nt2Genome GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACC-ACCCTGCAAG ctcaacaaacccagttcatatcaagtttcctcttccttgccttgtgccagGATGGCCATGAGCTACCCCCTCCAATTTCTTTTGATGTTGAAGCTCCTACAATGTTACCCACCCTGTAAGgtaagtgttgggttcaccttagaaatttgatagaagagatcactggtcct Alignment from Pairagon GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTA-CCACCCTGCAAG ctcaacaaacccagttcatatcaagtttcctcttccttgccttgtgccagGATGGCCATGAGCTACCCCCTCCAATTTCTTTTGATGTTGAAGCTCCTACAATGTTACCCACCCTGTAAGgtaagtgttgggttcaccttagaaatttgatagaagagatcactggtcct Alignment from Exonerate_protein2genome GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTA-CCACCCTGCAAG ctcaacaaacccagttcatatcaagtttcctcttccttgccttgtgccagGATGGCCATGAGCTACCCCCTCCAATTTCTTTTGATGTTGAAGCTCCTACAATGTTACCCACCCTGTAAGgtaagtgttgggttcaccttagaaatttgatagaagagatcactggtcct Alignment from Exonerate_coding2genome GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTA-CCACCCTGCAAG ctcaacaaacccagttcatatcaagtttcctcttccttgccttgtgccagGATGGCCATGAGCTACCCCCTCCAATTTCTTTTGATGTTGAAGCTCCTACAATGTTACCCACCCTGTAAGgtaagtgttgggttcaccttagaaatttgatagaagagatcactggtcct Alignment from GeneWise GATGGCCATGAGCTACCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATG-TTACCACCCTGCAAG ctcaacaaacccagttcatatcaagtttcctcttccttgccttgtgccagGATGGCCATGAGCTACCCCCTCCAATTTCTTTTGATGTTGAAGCTCCTACAATGTTACCCACCCTGTAAGgtaagtgttgggttcaccttagaaatttgatagaagagatcactggtcct #### Nxf1_ID2353_13 --> 0 - 2 Original Alignment GGAAGCTATTTTGGAACC-GAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGca gatagaagagatcactggtcctatgattcttctgtctactcatcccacagGGAAGTTACTTTGGAACTCGAGAATCTAAAAAGTCTGGTCCTACACTTCTTGCAGcagtgagtgccccacacaatagtcatcagggtaacaactggactatgcatat Alignment from CESAR GGAAGCTATTTTGGAACC-GAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGca gatagaagagatcactggtcctatgattcttctgtctactcatcccacagGGAAGTTACTTTGGAACTCGAGAATCTAAAAAGTCTGGTCCTACACTTCTTGCAGcagtgagtgccccacacaatagtcatcagggtaacaactggactatgcatat Alignment from Spaln_aa2Genome GGAAGCTATTTTGGAACC-GAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA gatagaagagatcactggtcctatgattcttctgtctactcatcccacagGGAAGTTACTTTGGAACTcGAGAATCTAAAAAGTCTGGTCCTACACTTCTTGCAGCAgtgagtgccccacacaatagtcatcagggtaacaactggactatgcatat Alignment from Spaln_nt2Genome GGAAGCTATTTTGGAAC-CGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA gatagaagagatcactggtcctatgattcttctgtctactcatcccacagGGAAGTTACTTTGGAACTCGAGAATCTAAAAAGTCTGGTCCTACACTTCTTGCAGCAgtgagtgccccacacaatagtcatcagggtaacaactggactatgcatat Alignment from Pairagon GGAAGCTATTTTGGAAC-CGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA gatagaagagatcactggtcctatgattcttctgtctactcatcccacagGGAAGTTACTTTGGAACTCGAGAATCTAAAAAGTCTGGTCCTACACTTCTTGCAGCAgtgagtgccccacacaatagtcatcagggtaacaactggactatgcatat Alignment from Exonerate_protein2genome GGAAGCTATTTTGGAACC-GAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA gatagaagagatcactggtcctatgattcttctgtctactcatcccacagGGAAGTTACTTTGGAACTCGAGAATCTAAAAAGTCTGGTCCTACACTTCTTGCAGCAgtgagtgccccacacaatagtcatcagggtaacaactggactatgcatat Alignment from Exonerate_coding2genome GGAAGCTATTTTGGAACC-GAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA gatagaagagatcactggtcctatgattcttctgtctactcatcccacagGGAAGTTACTTTGGAACTCGAGAATCTAAAAAGTCTGGTCCTACACTTCTTGCAGCAgtgagtgccccacacaatagtcatcagggtaacaactggactatgcatat Alignment from GeneWise GCTATTTTGGAACCGAGAACCTAAAGAGTCTGGTCCTGCGCTTCTTGCAGCA gatagaagagatcactggtcctatgattcttctgtctactcatcccacagggaagTTACTTTGGAACTCGAGAATCTAAAAAGTCTGGTCCTACACTTCTTGCAGCAgtgagtgccccacacaatagtcatcagggtaacaactggactatgcatat #### Nxf1_ID2357_17 --> 0 - 1 Original Alignment AGCACATTACTGTGTTTTTCT-GTCAATGGAGTCTTCAAGGAAg acacaagtaattccaagcctccctagctcaaactagggttctttctgtagAGTACATTACTGTGTCTATCCCTTAAATGAAGTCCTCAAGGAAtgtgagatgtgataaatgttagttctgcacctctgccagtatcttgctgtg Alignment from CESAR AGCACATTACTGTGTTTTTCTGTC-AATGGAGTCTTCAAGGAAg acacaagtaattccaagcctccctagctcaaactagggttctttctgtagAGTACATTACTGTGTCTATCCCTTAAATGAAGTCCTCAAGGAAtgtgagatgtgataaatgttagttctgcacctctgccagtatcttgctgtg Alignment from Spaln_aa2Genome CATTACTGTGT---TTTTCTGTCAATGGAGTCTTCAAGGAAG acacaagtaattccaagcctccctagctcaaactagggttctttctgtagagTACATTACTGTGTCTATCCCTTAAATGAAGTCCTCAAGGAATgtgagatgtgataaatgttagttctgcacctctgccagtatcttgctgtg Alignment from Spaln_nt2Genome AGCACATTACTGTGTTTTTCTGTCAA-TGGAGTCTTCAAGGAAG acacaagtaattccaagcctccctagctcaaactagggttctttctgtagAGTACATTACTGTGTCTATCCCTTAAATGAAGTCCTCAAGGAATgtgagatgtgataaatgttagttctgcacctctgccagtatcttgctgtg Alignment from Pairagon AGCACATTACTGTGTTTTTCTGTC-AATGGAGTCTTCAAGGAAG acacaagtaattccaagcctccctagctcaaactagggttctttctgtagAGTACATTACTGTGTCTATCCCTTAAATGAAGTCCTCAAGGAATgtgagatgtgataaatgttagttctgcacctctgccagtatcttgctgtg Alignment from Exonerate_protein2genome acacaagtaattccaagcctccctagctcaaactagggttctttctgtagagtacattactgtgtctatcccttaaatgaagtcctcaaggaatgtgagatgtgataaatgttagttctgcacctctgccagtatcttgctgtg Alignment from Exonerate_coding2genome acacaagtaattccaagcctccctagctcaaactagggttctttctgtagagtacattactgtgtctatcccttaaatgaagtcctcaaggaatgtgagatgtgataaatgttagttctgcacctctgccagtatcttgctgtg Alignment from GeneWise acacaagtaattccaagcctccctagctcaaactagggttctttctgtagagtacattactgtgtctatcccttaaatgaagtcctcaaggaatgtgagatgtgataaatgttagttctgcacctctgccagtatcttgctgtg #### Osbp_ID3346_5 --> 2 - 2 Original Alignment atCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCA-GAGATTATCACCATGCCTGAAAATTTGGGCCACaa ctgggagttaagaaccaacagagaaacagaccctcctctttccttttcagatCAATGCTGTTCTGGAAAAGGGGACATGAGTAAGGAAGATGATGAGAATGAATTTTTTGATGCACCACGAGATAATCACCATGCCTGAAAATTTAAGCCACaagtgagacctttggcgagtaaacaaacaaagagatatgttcacacaggtga Alignment from CESAR atCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCA-GAGATTATCACCATGCCTGAAAATTTGGGCCACaa ctgggagttaagaaccaacagagaaacagaccctcctctttccttttcagatCAATGCTGTTCTGGAAAAGGGGACATGAGTAAGGAAGATGATGAGAATGAATTTTTTGATGCACCACGAGATAATCACCATGCCTGAAAATTTAAGCCACaagtgagacctttggcgagtaaacaaacaaagagatatgttcacacaggtga Alignment from Spaln_aa2Genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCA-GAGATTATCACCATGCCTGAAAATTTGGGCCACAA ctgggagttaagaaccaacagagaaacagaccctcctctttccttttcagATCAATGCTGTTCTGGAAAAGGGGACATGAGTAAGGAAGATGATGAGAATGAATTTTTTGATGCACCAcGAGATAATCACCATGCCTGAAAATTTAAGCCACAAgtgagacctttggcgagtaaacaaacaaagagatatgttcacacaggtga Alignment from Spaln_nt2Genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCA-GAGATTATCACCATGCCTGAAAATTTGGGCCACAA ctgggagttaagaaccaacagagaaacagaccctcctctttccttttcagATCAATGCTGTTCTGGAAAAGGGGACATGAGTAAGGAAGATGATGAGAATGAATTTTTTGATGCACCACGAGATAATCACCATGCCTGAAAATTTAAGCCACAAgtgagacctttggcgagtaaacaaacaaagagatatgttcacacaggtga Alignment from Pairagon ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCA-GAGATTATCACCATGCCTGAAAATTTGGGCCACAA ctgggagttaagaaccaacagagaaacagaccctcctctttccttttcagATCAATGCTGTTCTGGAAAAGGGGACATGAGTAAGGAAGATGATGAGAATGAATTTTTTGATGCACCACGAGATAATCACCATGCCTGAAAATTTAAGCCACAAgtgagacctttggcgagtaaacaaacaaagagatatgttcacacaggtga Alignment from Exonerate_protein2genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCA-GAGATTATCACCATGCCTGAAAATTTGGGCCACAA ctgggagttaagaaccaacagagaaacagaccctcctctttccttttcagATCAATGCTGTTCTGGAAAAGGGGACATGAGTAAGGAAGATGATGAGAATGAATTTTTTGATGCACCACGAGATAATCACCATGCCTGAAAATTTAAGCCACAAgtgagacctttggcgagtaaacaaacaaagagatatgttcacacaggtga Alignment from Exonerate_coding2genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCA-GAGATTATCACCATGCCTGAAAATTTGGGCCACAA ctgggagttaagaaccaacagagaaacagaccctcctctttccttttcagATCAATGCTGTTCTGGAAAAGGGGACATGAGTAAGGAAGATGATGAGAATGAATTTTTTGATGCACCACGAGATAATCACCATGCCTGAAAATTTAAGCCACAAgtgagacctttggcgagtaaacaaacaaagagatatgttcacacaggtga Alignment from GeneWise ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGATGACGAGAATGAGTTTTTTGATGCACCA-GAGATTATCACCATGCCTGAAAATTTGGGCCACAA ctgggagttaagaaccaacagagaaacagaccctcctctttccttttcagATCAATGCTGTTCTGGAAAAGGGGACATGAGTAAGGAAGATGATGAGAATGAATTTTTTGATGCACCACGAGATAATCACCATGCCTGAAAATTTAAGCCACAAgtgagacctttggcgagtaaacaaacaaagagatatgttcacacaggtga #### Otub1_ID2060_6 --> 0 - 0 Original Alignment TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTC-ATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG actagcttggtactgttgtcatttagtgaactcttctgtttttcctttagTTCATGGACTTTATCGAGCAGGTGGAGAAACAGACCTCTGTCACTGACCTGCTGGCCTCCTTCAATGACCAAAGCACTTCAGACTACCTTGTGGTCTACCTGCAGCTGCTAACCTCAGGCTACGTACAGCGGAAAAGCAAGTTCTTTGAGCATTTCCATTGAAGGCGGCCGGACTGTTAAGGAATTTTGTCAAGAGgtaagccctcccctatcatctgcactggggccccccttttttttcttcat Alignment from CESAR TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTC-ATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG actagcttggtactgttgtcatttagtgaactcttctgtttttcctttagTTCATGGACTTTATCGAGCAGGTGGAGAAACAGACCTCTGTCACTGACCTGCTGGCCTCCTTCAATGACCAAAGCACTTCAGACTACCTTGTGGTCTACCTGCAGCTGCTAACCTCAGGCTACGTACAGCGGAAAAGCAAGTTCTTTGAGCATTTCCATTGAAGGCGGCCGGACTGTTAAGGAATTTTGTCAAGAGgtaagccctcccctatcatctgcactggggccccccttttttttcttcat Alignment from Spaln_aa2Genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTC-ATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG actagcttggtactgttgtcatttagtgaactcttctgtttttcctttagTTCATGGACTTTATCGAGCAGGTGGAGAAACAGACCTCTGTCACTGACCTGCTGGCCTCCTTCAATGACCAAAGCACTTCAGACTACCTTGTGGTCTACCTGCAGCTGCTAACCTCAGGCTACGTACAGCGGAAAAGCAAGTTCTTTGAGCATTTCcATTGAAGGCGGCCGGACTGTTAAGGAATTTTGTCAAGAGgtaagccctcccctatcatctgcactggggccccccttttttttcttcat Alignment from Spaln_nt2Genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTC-ATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG actagcttggtactgttgtcatttagtgaactcttctgtttttcctttagTTCATGGACTTTATCGAGCAGGTGGAGAAACAGACCTCTGTCACTGACCTGCTGGCCTCCTTCAATGACCAAAGCACTTCAGACTACCTTGTGGTCTACCTGCAGCTGCTAACCTCAGGCTACGTACAGCGGAAAAGCAAGTTCTTTGAGCATTTCCATTGAAGGCGGCCGGACTGTTAAGGAATTTTGTCAAGAGgtaagccctcccctatcatctgcactggggccccccttttttttcttcat Alignment from Pairagon TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTT-CATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG actagcttggtactgttgtcatttagtgaactcttctgtttttcctttagTTCATGGACTTTATCGAGCAGGTGGAGAAACAGACCTCTGTCACTGACCTGCTGGCCTCCTTCAATGACCAAAGCACTTCAGACTACCTTGTGGTCTACCTGCAGCTGCTAACCTCAGGCTACGTACAGCGGAAAAGCAAGTTCTTTGAGCATTTCCATTGAAGGCGGCCGGACTGTTAAGGAATTTTGTCAAGAGgtaagccctcccctatcatctgcactggggccccccttttttttcttcat Alignment from Exonerate_protein2genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTC-ATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG actagcttggtactgttgtcatttagtgaactcttctgtttttcctttagTTCATGGACTTTATCGAGCAGGTGGAGAAACAGACCTCTGTCACTGACCTGCTGGCCTCCTTCAATGACCAAAGCACTTCAGACTACCTTGTGGTCTACCTGCAGCTGCTAACCTCAGGCTACGTACAGCGGAAAAGCAAGTTCTTTGAGCATTTCCATTGAAGGCGGCCGGACTGTTAAGGAATTTTGTCAAGAGgtaagccctcccctatcatctgcactggggccccccttttttttcttcat Alignment from Exonerate_coding2genome TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTC-ATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG actagcttggtactgttgtcatttagtgaactcttctgtttttcctttagTTCATGGACTTTATCGAGCAGGTGGAGAAACAGACCTCTGTCACTGACCTGCTGGCCTCCTTCAATGACCAAAGCACTTCAGACTACCTTGTGGTCTACCTGCAGCTGCTAACCTCAGGCTACGTACAGCGGAAAAGCAAGTTCTTTGAGCATTTCCATTGAAGGCGGCCGGACTGTTAAGGAATTTTGTCAAGAGgtaagccctcccctatcatctgcactggggccccccttttttttcttcat Alignment from GeneWise TTCATGGACCTTATCGAGCAGGTGGAGAAGCAGACCTCAGTAGCTGACCTGCTGGCCTCCTTCAATGACCAGAGCACCTCAGACTACCTTGTGGTCTACCTGCGACTGCTCACCTCAGGCTACCTACAGCGGGAGAGCAAGTTCTTCGAGCACTTC-ATCGAGGGTGGCCGGACTGTTAAGGAGTTCTGCCAGCAG actagcttggtactgttgtcatttagtgaactcttctgtttttcctttagTTCATGGACTTTATCGAGCAGGTGGAGAAACAGACCTCTGTCACTGACCTGCTGGCCTCCTTCAATGACCAAAGCACTTCAGACTACCTTGTGGTCTACCTGCAGCTGCTAACCTCAGGCTACGTACAGCGGAAAAGCAAGTTCTTTGAGCATTTCCATTGAAGGCGGCCGGACTGTTAAGGAATTTTGTCAAGAGgtaagccctcccctatcatctgcactggggccccccttttttttcttcat #### Pacs1_ID876_18 --> 2 - 2 Original Alignment agCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAA-GCCATGTTGACCTGCAGGCATAAGtt cagtgctctctgaggaatataattcttgtcccggcacctgtacatcccagagCCACTAGACGTGGTGGGTCGTGTGATGCTGTATATCAATGGAGCTATCACAACACACCAGCTTCCCATCGCTGAACGCCATGCTGACCTGCAGGCATAAGttgtaagcctaatatcagtagctttatggaattagcttggacagagggagtt Alignment from CESAR agCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAA-GCCATGTTGACCTGCAGGCATAAGtt cagtgctctctgaggaatataattcttgtcccggcacctgtacatcccagagCCACTAGACGTGGTGGGTCGTGTGATGCTGTATATCAATGGAGCTATCACAACACACCAGCTTCCCATCGCTGAACGCCATGCTGACCTGCAGGCATAAGttgtaagcctaatatcagtagctttatggaattagcttggacagagggagtt Alignment from Spaln_aa2Genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAA-GCCATGTTGACCTGCAGGCATAAGTT cagtgctctctgaggaatataattcttgtcccggcacctgtacatcccagAGCCACTAGACGTGGTGGGTCGTGTGATGCTGTATATCAATGGAGCTATCACAACACACCAGCTTCCCATCGCTGAAcGCCATGCTGACCTGCAGGCATAAGTTgtaagcctaatatcagtagctttatggaattagcttggacagagggagtt Alignment from Spaln_nt2Genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAA-GCCATGTTGACCTGCAGGCATAAGTT cagtgctctctgaggaatataattcttgtcccggcacctgtacatcccagAGCCACTAGACGTGGTGGGTCGTGTGATGCTGTATATCAATGGAGCTATCACAACACACCAGCTTCCCATCGCTGAACGCCATGCTGACCTGCAGGCATAAGTTgtaagcctaatatcagtagctttatggaattagcttggacagagggagtt Alignment from Pairagon AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAA-GCCATGTTGACCTGCAGGCATAAGTT cagtgctctctgaggaatataattcttgtcccggcacctgtacatcccagAGCCACTAGACGTGGTGGGTCGTGTGATGCTGTATATCAATGGAGCTATCACAACACACCAGCTTCCCATCGCTGAACGCCATGCTGACCTGCAGGCATAAGTTgtaagcctaatatcagtagctttatggaattagcttggacagagggagtt Alignment from Exonerate_protein2genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAA-GCCATGTTGACCTGCAGGCATAAGTT cagtgctctctgaggaatataattcttgtcccggcacctgtacatcccagAGCCACTAGACGTGGTGGGTCGTGTGATGCTGTATATCAATGGAGCTATCACAACACACCAGCTTCCCATCGCTGAACGCCATGCTGACCTGCAGGCATAAGTTgtaagcctaatatcagtagctttatggaattagcttggacagagggagtt Alignment from Exonerate_coding2genome AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAAGC---CATGTTGACCTGCAGGCATAAGTT cagtgctctctgaggaatataattcttgtcccggcacctgtacatcccagAGCCACTAGACGTGGTGGGTCGTGTGATGCTGTATATCAATGGAGCTATCACAACACACCAGCTTCCCATCGCTGAA--CGCCATGCTGACCTGCAGGCATAAGTTgtaagcctaatatcagtagctttatggaattagcttggacagagggagtt Alignment from GeneWise AGCCACTGGACGTGGTGGGTCGTGTGATGCAGTATGTCAATGGAGCTACCACAACACACCAGCTGCCTGTGGCTGAA-GCCATGTTGACCTGCAGGCATAAGTT cagtgctctctgaggaatataattcttgtcccggcacctgtacatcccagAGCCACTAGACGTGGTGGGTCGTGTGATGCTGTATATCAATGGAGCTATCACAACACACCAGCTTCCCATCGCTGAACGCCATGCTGACCTGCAGGCATAAGTTgtaagcctaatatcagtagctttatggaattagcttggacagagggagtt #### Pacs1_ID885_9 --> 0 - 2 Original Alignment GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAA-AGCATCCTCAGCACCCCAAAGCCCAAGCTCaa ctaagtgttgctggtgaggacctatagtttgctaattatatgtttaacagGTGGGTTTTGGGTTAGAACACGTGTCCCGGGAGCAAATTCGAGAAGTGGAGGAGGACTTAGATGAACTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAACAGCATTCTCAGCACCCCGAAGCCCAAACTCaagtgaggccccaaagccctttccacccaagctccttgcttctgtttgtgtc Alignment from CESAR GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAA-AGCATCCTCAGCACCCCAAAGCCCAAGCTCaa ctaagtgttgctggtgaggacctatagtttgctaattatatgtttaacagGTGGGTTTTGGGTTAGAACACGTGTCCCGGGAGCAAATTCGAGAAGTGGAGGAGGACTTAGATGAACTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAACAGCATTCTCAGCACCCCGAAGCCCAAACTCaagtgaggccccaaagccctttccacccaagctccttgcttctgtttgtgtc Alignment from Spaln_aa2Genome GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAA-AGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ctaagtgttgctggtgaggacctatagtttgctaattatatgtttaacagGTGGGTTTTGGGTTAGAACACGTGTCCCGGGAGCAAATTCGAGAAGTGGAGGAGGACTTAGATGAACTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAcAGCATTCTCAGCACCCCGAAGCCCAAACTCAAgtgaggccccaaagccctttccacccaagctccttgcttctgtttgtgtc Alignment from Spaln_nt2Genome GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAA-AGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ctaagtgttgctggtgaggacctatagtttgctaattatatgtttaacagGTGGGTTTTGGGTTAGAACACGTGTCCCGGGAGCAAATTCGAGAAGTGGAGGAGGACTTAGATGAACTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAACAGCATTCTCAGCACCCCGAAGCCCAAACTCAAgtgaggccccaaagccctttccacccaagctccttgcttctgtttgtgtc Alignment from Pairagon GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAA-AGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ctaagtgttgctggtgaggacctatagtttgctaattatatgtttaacagGTGGGTTTTGGGTTAGAACACGTGTCCCGGGAGCAAATTCGAGAAGTGGAGGAGGACTTAGATGAACTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAACAGCATTCTCAGCACCCCGAAGCCCAAACTCAAgtgaggccccaaagccctttccacccaagctccttgcttctgtttgtgtc Alignment from Exonerate_protein2genome GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAA-AGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ctaagtgttgctggtgaggacctatagtttgctaattatatgtttaacagGTGGGTTTTGGGTTAGAACACGTGTCCCGGGAGCAAATTCGAGAAGTGGAGGAGGACTTAGATGAACTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAACAGCATTCTCAGCACCCCGAAGCCCAAACTCAAgtgaggccccaaagccctttccacccaagctccttgcttctgtttgtgtc Alignment from Exonerate_coding2genome GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAA-AGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ctaagtgttgctggtgaggacctatagtttgctaattatatgtttaacagGTGGGTTTTGGGTTAGAACACGTGTCCCGGGAGCAAATTCGAGAAGTGGAGGAGGACTTAGATGAACTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAACAGCATTCTCAGCACCCCGAAGCCCAAACTCAAgtgaggccccaaagccctttccacccaagctccttgcttctgtttgtgtc Alignment from GeneWise GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAACTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAA-AGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ctaagtgttgctggtgaggacctatagtttgctaattatatgtttaacagGTGGGTTTTGGGTTAGAACACGTGTCCCGGGAGCAAATTCGAGAAGTGGAGGAGGACTTAGATGAACTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAACAGCATTCTCAGCACCCCGAAGCCCAAACTCAAgtgaggccccaaagccctttccacccaagctccttgcttctgtttgtgtc #### Pcnxl3_ID1159_34 --> 2 - 0 Original Alignment gcAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCC-AGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG ataggtgagacatcatgctagctgccatttccctcttccctccccaaaaggcAGCAGTGAGCAGCCCCTTCCACCAGGCCCTAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGGGGATGGGCGACCCCCTTCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCAGGCCCTGCTCTCCTTAATTCAGAGGGACCCCAGTGGGAAGTGGAGTTTGGGGGGTCAGAAGGGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGGGGTAGCCCCAAGTCTCAGgtaagtaacctgtggataaaggagcctccctgatcacaagctggatactc Alignment from CESAR gcAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGA-CCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG ataggtgagacatcatgctagctgccatttccctcttccctccccaaaaggcAGCAGTGAGCAGCCCCTTCCACCAGGCCCTAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGGGGATGGGCGACCCCCTTCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCAGGCCCTGCTCTCCTTAATTCAGAGGGACCCCAGTGGGAAGTGGAGTTTGGGGGGTCAGAAGGGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGGGGTAGCCCCAAGTCTCAGgtaagtaacctgtggataaaggagcctccctgatcacaagctggatactc Alignment from Spaln_aa2Genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGA-CCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG ataggtgagacatcatgctagctgccatttccctcttccctccccaaaagGCAGCAGTGAGCAGCCCCTTCCACCAGGCCCTAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGGGGATGGGCGACCCCCTTCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCAGGCCCTGCTCTCCTTAATTCAGAGGGAcCCCAGTGGGAAGTGGAGTTTGGGGGGTCAGAAGGGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGGGGTAGCCCCAAGTCTCAGgtaagtaacctgtggataaaggagcctccctgatcacaagctggatactc Alignment from Spaln_nt2Genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGA-GGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG ataggtgagacatcatgctagctgccatttccctcttccctccccaaaagGCAGCAGTGAGCAGCCCCTTCCACCAGGCCCTAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGGGGATGGGCGACCCCCTTCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCAGGCCCTGCTCTCCTTAATTCAGAGGGACCCCAGTGGGAAGTGGAGTTTGGGGGGTCAGAAGGGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGGGGTAGCCCCAAGTCTCAGgtaagtaacctgtggataaaggagcctccctgatcacaagctggatactc Alignment from Pairagon GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGA-CCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG ataggtgagacatcatgctagctgccatttccctcttccctccccaaaagGCAGCAGTGAGCAGCCCCTTCCACCAGGCCCTAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGGGGATGGGCGACCCCCTTCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCAGGCCCTGCTCTCCTTAATTCAGAGGGACCCCAGTGGGAAGTGGAGTTTGGGGGGTCAGAAGGGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGGGGTAGCCCCAAGTCTCAGgtaagtaacctgtggataaaggagcctccctgatcacaagctggatactc Alignment from Exonerate_protein2genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGA-CCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG ataggtgagacatcatgctagctgccatttccctcttccctccccaaaagGCAGCAGTGAGCAGCCCCTTCCACCAGGCCCTAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGGGGATGGGCGACCCCCTTCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCAGGCCCTGCTCTCCTTAATTCAGAGGGACCCCAGTGGGAAGTGGAGTTTGGGGGGTCAGAAGGGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGGGGTAGCCCCAAGTCTCAGgtaagtaacctgtggataaaggagcctccctgatcacaagctggatactc Alignment from Exonerate_coding2genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGA-CCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG ataggtgagacatcatgctagctgccatttccctcttccctccccaaaagGCAGCAGTGAGCAGCCCCTTCCACCAGGCCCTAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGGGGATGGGCGACCCCCTTCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCAGGCCCTGCTCTCCTTAATTCAGAGGGACCCCAGTGGGAAGTGGAGTTTGGGGGGTCAGAAGGGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGGGGTAGCCCCAAGTCTCAGgtaagtaacctgtggataaaggagcctccctgatcacaagctggatactc Alignment from GeneWise GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCC-AGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG ataggtgagacatcatgctagctgccatttccctcttccctccccaaaagGCAGCAGTGAGCAGCCCCTTCCACCAGGCCCTAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGGGGATGGGCGACCCCCTTCTCTGCTGCAGTGGCCTCCCCCTCGGCTCCCGGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCAGGCCCTGCTCTCCTTAATTCAGAGGGACCCCAGTGGGAAGTGGAGTTTGGGGGGTCAGAAGGGACTGGGAGGAACTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGGGGTAGCCCCAAGTCTCAGgtaagtaacctgtggataaaggagcctccctgatcacaagctggatactc #### Pcnxl3_ID1160_33 --> 1 - 1 Original Alignment aCTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCT-ACGCCTGAAAATGCAGCAg taagccacataatgccttaccatacaccaatctatgtattgtcattgcagaCTCCACAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATCTCGATGACTCTGATTGTGGTGGGGGTGGTGGCCTGGCTTCCCTCAGCAACCATCCTCCCTTGGTACATCCTCACACCTGATAATGCGGCAggtaagggcaaggtttcagggaaattataggtgagacatcatgctagctgc Alignment from CESAR aCTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCT-ACGCCTGAAAATGCAGCAg taagccacataatgccttaccatacaccaatctatgtattgtcattgcagaCTCCACAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATCTCGATGACTCTGATTGTGGTGGGGGTGGTGGCCTGGCTTCCCTCAGCAACCATCCTCCCTTGGTACATCCTCACACCTGATAATGCGGCAggtaagggcaaggtttcagggaaattataggtgagacatcatgctagctgc Alignment from Spaln_aa2Genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCT-ACGCCTGAAAATGCAGCAG taagccacataatgccttaccatacaccaatctatgtattgtcattgcagACTCCACAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATCTCGATGACTCTGATTGTGGTGGGGGTGGTGGCCTGGCTTCCCTCAGCAACCATCCTCCCTTGGTACATCCTcACACCTGATAATGCGGCAGgtaagggcaaggtttcagggaaattataggtgagacatcatgctagctgc Alignment from Spaln_nt2Genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCT-ACGCCTGAAAATGCAGCAG taagccacataatgccttaccatacaccaatctatgtattgtcattgcagACTCCACAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATCTCGATGACTCTGATTGTGGTGGGGGTGGTGGCCTGGCTTCCCTCAGCAACCATCCTCCCTTGGTACATCCTCACACCTGATAATGCGGCAGgtaagggcaaggtttcagggaaattataggtgagacatcatgctagctgc Alignment from Pairagon ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCT-ACGCCTGAAAATGCAGCAG taagccacataatgccttaccatacaccaatctatgtattgtcattgcagACTCCACAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATCTCGATGACTCTGATTGTGGTGGGGGTGGTGGCCTGGCTTCCCTCAGCAACCATCCTCCCTTGGTACATCCTCACACCTGATAATGCGGCAGgtaagggcaaggtttcagggaaattataggtgagacatcatgctagctgc Alignment from Exonerate_protein2genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCT-ACGCCTGAAAATGCAGCAG taagccacataatgccttaccatacaccaatctatgtattgtcattgcagACTCCACAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATCTCGATGACTCTGATTGTGGTGGGGGTGGTGGCCTGGCTTCCCTCAGCAACCATCCTCCCTTGGTACATCCTCACACCTGATAATGCGGCAGgtaagggcaaggtttcagggaaattataggtgagacatcatgctagctgc Alignment from Exonerate_coding2genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCT-ACGCCTGAAAATGCAGCAG taagccacataatgccttaccatacaccaatctatgtattgtcattgcagACTCCACAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATCTCGATGACTCTGATTGTGGTGGGGGTGGTGGCCTGGCTTCCCTCAGCAACCATCCTCCCTTGGTACATCCTCACACCTGATAATGCGGCAGgtaagggcaaggtttcagggaaattataggtgagacatcatgctagctgc Alignment from GeneWise ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATGTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCT-ACGCCTGAAAATGCAGCAG taagccacataatgccttaccatacaccaatctatgtattgtcattgcagACTCCACAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATCTCGATGACTCTGATTGTGGTGGGGGTGGTGGCCTGGCTTCCCTCAGCAACCATCCTCCCTTGGTACATCCTCACACCTGATAATGCGGCAGgtaagggcaaggtttcagggaaattataggtgagacatcatgctagctgc #### Pcnxl3_ID1162_31 --> 0 - 0 Original Alignment GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCAT-GTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG gagtgccttccccttaccttggaccctgtgatgctaccctgtctctccagGATCATTTCACATCTCCTGACGAGTATGAGGAACCAGCTGCCCTATACGACACCATTGCAGCCAATGAGGAACGGCTAGTGATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCAATTCTCAGCAACACCCCCTCCCTACTTGTGCTCCGCCATCGACATGGATGATGCCTCTGGTGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtcagtcaaatttaatcaattaagcagcctatgttgttctgttgcccccc Alignment from CESAR GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCAT-GTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG gagtgccttccccttaccttggaccctgtgatgctaccctgtctctccagGATCATTTCACATCTCCTGACGAGTATGAGGAACCAGCTGCCCTATACGACACCATTGCAGCCAATGAGGAACGGCTAGTGATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCAATTCTCAGCAACACCCCCTCCCTACTTGTGCTCCGCCATCGACATGGATGATGCCTCTGGTGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtcagtcaaatttaatcaattaagcagcctatgttgttctgttgcccccc Alignment from Spaln_aa2Genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCAT-GTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG gagtgccttccccttaccttggaccctgtgatgctaccctgtctctccagGATCATTTCACATCTCCTGACGAGTATGAGGAACCAGCTGCCCTATACGACACCATTGCAGCCAATGAGGAACGGCTAGTGATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCAATTCTCAGCAACACCCCCTCCCTACTTGTGCTCCGCCATcGACATGGATGATGCCTCTGGTGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtcagtcaaatttaatcaattaagcagcctatgttgttctgttgcccccc Alignment from Spaln_nt2Genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCAT-GTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG gagtgccttccccttaccttggaccctgtgatgctaccctgtctctccagGATCATTTCACATCTCCTGACGAGTATGAGGAACCAGCTGCCCTATACGACACCATTGCAGCCAATGAGGAACGGCTAGTGATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCAATTCTCAGCAACACCCCCTCCCTACTTGTGCTCCGCCATCGACATGGATGATGCCTCTGGTGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtcagtcaaatttaatcaattaagcagcctatgttgttctgttgcccccc Alignment from Pairagon ----------------------------------------------CCAGGACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCAT-GTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG GAGTGCCTTCCCCTTACCTTGGACCCTGTGATGCTACCCTGTCTCTCCAGGATCATTTCACATCTCCTGACGAGTATGAGGAACCAGCTGCCCTATACGACACCATTGCAGCCAATGAGGAACGGCTAGTGATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCAATTCTCAGCAACACCCCCTCCCTACTTGTGCTCCGCCATCGACATGGATGATGCCTCTGGTGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtcagtcaaatttaatcaattaagcagcctatgttgttctgttgcccccc Alignment from Exonerate_protein2genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCAT-GTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG gagtgccttccccttaccttggaccctgtgatgctaccctgtctctccagGATCATTTCACATCTCCTGACGAGTATGAGGAACCAGCTGCCCTATACGACACCATTGCAGCCAATGAGGAACGGCTAGTGATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCAATTCTCAGCAACACCCCCTCCCTACTTGTGCTCCGCCATCGACATGGATGATGCCTCTGGTGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtcagtcaaatttaatcaattaagcagcctatgttgttctgttgcccccc Alignment from Exonerate_coding2genome GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCAT-GTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG gagtgccttccccttaccttggaccctgtgatgctaccctgtctctccagGATCATTTCACATCTCCTGACGAGTATGAGGAACCAGCTGCCCTATACGACACCATTGCAGCCAATGAGGAACGGCTAGTGATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCAATTCTCAGCAACACCCCCTCCCTACTTGTGCTCCGCCATCGACATGGATGATGCCTCTGGTGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtcagtcaaatttaatcaattaagcagcctatgttgttctgttgcccccc Alignment from GeneWise GACCATTTCACATCTCCTGATGAGTATGAGGAACCAGCAGCCCTGTATGACGCCATCGCGGCCAATGAGGAGCGGCTAGTCATCTCACATGAGGGGGACCCTGCCTGGCGCAGTGCCATCCTCAGCAACACCCCCTCCCTGCTGGCGCTGCGCCAT-GTCATGGACGACGCTTCTGACGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAG gagtgccttccccttaccttggaccctgtgatgctaccctgtctctccagGATCATTTCACATCTCCTGACGAGTATGAGGAACCAGCTGCCCTATACGACACCATTGCAGCCAATGAGGAACGGCTAGTGATCTCACATGAGGGAGACCCAGCCTGGCGGAGTGCAATTCTCAGCAACACCCCCTCCCTACTTGTGCTCCGCCATCGACATGGATGATGCCTCTGGTGAGTACAAGATCATCATGCTCAACAGGCGCCACCTCAGCTTCCGAGTCATCAAGgtcagtcaaatttaatcaattaagcagcctatgttgttctgttgcccccc #### Pcnxl3_ID1164_29 --> 0 - 2 Original Alignment CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGT-GTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCag attgtgttgcctggggtctttgagtaaatgtttctatgtttcatttttagCCCGTGGACCAGGATTGGAATTCACCATTGGTTACATTGTGCTTTGGCTTGTGTCGTGTTGGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCaggtgagcgcccacaggcgggagaaaagcccaacaactcattagtacactta Alignment from CESAR CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGT-GTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCag attgtgttgcctggggtctttgagtaaatgtttctatgtttcatttttagCCCGTGGACCAGGATTGGAATTCACCATTGGTTACATTGTGCTTTGGCTTGTGTCGTGTTGGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCaggtgagcgcccacaggcgggagaaaagcccaacaactcattagtacactta Alignment from Spaln_aa2Genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGT-GTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG attgtgttgcctggggtctttgagtaaatgtttctatgtttcatttttagCCCGTGGACCAGGATTGGAATTCACCATTGGTTACATTGTGCTTTGGCTTGTGTcGTGTTGGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCAGgtgagcgcccacaggcgggagaaaagcccaacaactcattagtacactta Alignment from Spaln_nt2Genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGT-GTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG attgtgttgcctggggtctttgagtaaatgtttctatgtttcatttttagCCCGTGGACCAGGATTGGAATTCACCATTGGTTACATTGTGCTTTGGCTTGTGTCGTGTTGGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCAGgtgagcgcccacaggcgggagaaaagcccaacaactcattagtacactta Alignment from Pairagon CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGT-GTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG attgtgttgcctggggtctttgagtaaatgtttctatgtttcatttttagCCCGTGGACCAGGATTGGAATTCACCATTGGTTACATTGTGCTTTGGCTTGTGTCGTGTTGGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCAGgtgagcgcccacaggcgggagaaaagcccaacaactcattagtacactta Alignment from Exonerate_protein2genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGT-GTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG attgtgttgcctggggtctttgagtaaatgtttctatgtttcatttttagCCCGTGGACCAGGATTGGAATTCACCATTGGTTACATTGTGCTTTGGCTTGTGTCGTGTTGGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCAGgtgagcgcccacaggcgggagaaaagcccaacaactcattagtacactta Alignment from Exonerate_coding2genome CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGT-GTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG attgtgttgcctggggtctttgagtaaatgtttctatgtttcatttttagCCCGTGGACCAGGATTGGAATTCACCATTGGTTACATTGTGCTTTGGCTTGTGTCGTGTTGGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCAGgtgagcgcccacaggcgggagaaaagcccaacaactcattagtacactta Alignment from GeneWise CCCGTGGACCAGGACTGGAATTCACCGTTGGTTACACTGTGCTTTGGCCTGTGT-GTGCTGGGTCGCCGGGCCCTGGGAACAGCGTCACACAGTATGTCTGCCAG attgtgttgcctggggtctttgagtaaatgtttctatgtttcatttttagCCCGTGGACCAGGATTGGAATTCACCATTGGTTACATTGTGCTTTGGCTTGTGTCGTGTTGGGTCGCCGGGCTCTGGGAACAGCATCACACAGCATGTCTGCCAGgtgagcgcccacaggcgggagaaaagcccaacaactcattagtacactta #### Pcnxl3_ID1167_26 --> 2 - 1 Original Alignment gcGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCT-GACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGg ttcatagaaaggcaatgggtctacttgaggcttcctgtccttacttacaggaGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCACTGCAACACATGCTTTGTGGTGATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTTGTCCTGGCCCCACGACTACCTCAATGGACTTGTCCACCTCATCGAGGTTGGCAATGGCCTCATCACCTACCAGCTCCATGGCCTCAAGTTCCGGggtgagtcagcctgggatggtacacaagttgggggcagagcatagatgtac Alignment from CESAR gcGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCT-GACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGg ttcatagaaaggcaatgggtctacttgaggcttcctgtccttacttacaggaGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCACTGCAACACATGCTTTGTGGTGATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTTGTCCTGGCCCCACGACTACCTCAATGGACTTGTCCACCTCATCGAGGTTGGCAATGGCCTCATCACCTACCAGCTCCATGGCCTCAAGTTCCGGggtgagtcagcctgggatggtacacaagttgggggcagagcatagatgtac Alignment from Spaln_aa2Genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCT-GACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG ttcatagaaaggcaatgggtctacttgaggcttcctgtccttacttacagGAGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCACTGCAACACATGCTTTGTGGTGATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTTGTCCTGGCCCCAcGACTACCTCAATGGACTTGTCCACCTCATCGAGGTTGGCAATGGCCTCATCACCTACCAGCTCCATGGCCTCAAGTTCCGGGgtgagtcagcctgggatggtacacaagttgggggcagagcatagatgtac Alignment from Spaln_nt2Genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTCT-GACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG ttcatagaaaggcaatgggtctacttgaggcttcctgtccttacttacagGAGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCACTGCAACACATGCTTTGTGGTGATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTTGTCCTGGCCCCACGACTACCTCAATGGACTTGTCCACCTCATCGAGGTTGGCAATGGCCTCATCACCTACCAGCTCCATGGCCTCAAGTTCCGGGgtgagtcagcctgggatggtacacaagttgggggcagagcatagatgtac Alignment from Pairagon GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCCTC-TGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG ttcatagaaaggcaatgggtctacttgaggcttcctgtccttacttacagGAGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCACTGCAACACATGCTTTGTGGTGATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTTGTCCTGGCCCCACGACTACCTCAATGGACTTGTCCACCTCATCGAGGTTGGCAATGGCCTCATCACCTACCAGCTCCATGGCCTCAAGTTCCGGGgtgagtcagcctgggatggtacacaagttgggggcagagcatagatgtac Alignment from Exonerate_protein2genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCC-TCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG ttcatagaaaggcaatgggtctacttgaggcttcctgtccttacttacagGAGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCACTGCAACACATGCTTTGTGGTGATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTTGTCCTGGCCCCACGACTACCTCAATGGACTTGTCCACCTCATCGAGGTTGGCAATGGCCTCATCACCTACCAGCTCCATGGCCTCAAGTTCCGGGgtgagtcagcctgggatggtacacaagttgggggcagagcatagatgtac Alignment from Exonerate_coding2genome GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCC-TCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG ttcatagaaaggcaatgggtctacttgaggcttcctgtccttacttacagGAGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCACTGCAACACATGCTTTGTGGTGATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTTGTCCTGGCCCCACGACTACCTCAATGGACTTGTCCACCTCATCGAGGTTGGCAATGGCCTCATCACCTACCAGCTCCATGGCCTCAAGTTCCGGGgtgagtcagcctgggatggtacacaagttgggggcagagcatagatgtac Alignment from GeneWise GCGCTGATGACAACAACCTCAACTCCATCTTCTATGAGCACTTGACACGCTCGCTGCAGCACACGCTGTGTGGGGATCTGGTGCTGGGCCGCTGGGGCAATTATGGCCCTGGAGACTGCTTTGTCCTGGCC-TCTGACTACCTCAACGCGCTAGTGCACCTCATTGAGGTTGGCAATGGCCTCATCACCTTCCAGCTTCGTGGCCTTGAGTTCCGGG ttcatagaaaggcaatgggtctacttgaggcttcctgtccttacttacagGAGCTGATGACAACAACCTCAATTTGCTCTTCTATCAACATTTGACACGCTCACTGCAACACATGCTTTGTGGTGATCTGGTACTGGGCTGCTGGGGCAACTATGGTCCAGGAGATTGCTTTGTCCTGGCCCCACGACTACCTCAATGGACTTGTCCACCTCATCGAGGTTGGCAATGGCCTCATCACCTACCAGCTCCATGGCCTCAAGTTCCGGGgtgagtcagcctgggatggtacacaagttgggggcagagcatagatgtac #### Pcnxl3_ID1174_19 --> 0 - 0 Original Alignment CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTC-ATTGCCCTGAAG ctgttacagtgctattggcagtcactgtttaaccaaatcttcctctgcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGTGCTAGCATTGTGTTCCATTGCCTTGAAAgtaaatgcagcatgggcacagctttgatagatcaggatgctgctatgtag Alignment from CESAR CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTC-ATTGCCCTGAAG ctgttacagtgctattggcagtcactgtttaaccaaatcttcctctgcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGTGCTAGCATTGTGTTCCATTGCCTTGAAAgtaaatgcagcatgggcacagctttgatagatcaggatgctgctatgtag Alignment from Spaln_aa2Genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG- ctgttacagtgctattggcagtcactgtttaaccaaatcttcctctgcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGTGCTAGCATTGTGTTCCATTGCCTTGAAAgtaaatgcagcatgggcacagctttgatagatcaggatgctgctatgtag Alignment from Spaln_nt2Genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTC-ATTGCCCTGAAG ctgttacagtgctattggcagtcactgtttaaccaaatcttcctctgcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGTGCTAGCATTGTGTTCCATTGCCTTGAAAgtaaatgcagcatgggcacagctttgatagatcaggatgctgctatgtag Alignment from Pairagon CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTT-CATTGCCCTGAAG ctgttacagtgctattggcagtcactgtttaaccaaatcttcctctgcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGTGCTAGCATTGTGTTCCATTGCCTTGAAAgtaaatgcagcatgggcacagctttgatagatcaggatgctgctatgtag Alignment from Exonerate_protein2genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTC-ATTGCCCTGAAG ctgttacagtgctattggcagtcactgtttaaccaaatcttcctctgcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGTGCTAGCATTGTGTTCCATTGCCTTGAAAgtaaatgcagcatgggcacagctttgatagatcaggatgctgctatgtag Alignment from Exonerate_coding2genome CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTC-ATTGCCCTGAAG ctgttacagtgctattggcagtcactgtttaaccaaatcttcctctgcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGTGCTAGCATTGTGTTCCATTGCCTTGAAAgtaaatgcagcatgggcacagctttgatagatcaggatgctgctatgtag Alignment from GeneWise CGGGAAGTCTTGCACTCCGACCTGGTGATGTGTGTGGTGATCGCCGTGCTCACCTTTGCCGTCAGTGCCAGCACCGTCTTCATTGCCCTGAAG- ctgttacagtgctattggcagtcactgtttaaccaaatcttcctctgcagAGGGAAGTCTTGCACTCTGACCTGGTAATGTGTGTGGTGATCGCTGTGCTCATCTTTGCTGTCAGTGCTAGCATTGTGTTCCATTGCCTTGAAAgtaaatgcagcatgggcacagctttgatagatcaggatgctgctatgtag #### Pcnxl3_ID1179_14 --> 0 - 1 Original Alignment GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTC-TTCTTTTGTGCCCGAGATGTGGCCACTg atggtccagaatcctcattagcctactcgccgggctttctctctctgcagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTCTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCCTTCTTTTGTGCACGAGATGTGGCAACTggtaagtcggtacaagatagatcaagggactgagtctgaatgctgggccct Alignment from CESAR GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTC-TTCTTTTGTGCCCGAGATGTGGCCACTg atggtccagaatcctcattagcctactcgccgggctttctctctctgcagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTCTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCCTTCTTTTGTGCACGAGATGTGGCAACTggtaagtcggtacaagatagatcaagggactgagtctgaatgctgggccct Alignment from Spaln_aa2Genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTC-TTCTTTTGTGCCCGAGATGTGGCCACTG atggtccagaatcctcattagcctactcgccgggctttctctctctgcagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTCTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCcTTCTTTTGTGCACGAGATGTGGCAACTGgtaagtcggtacaagatagatcaagggactgagtctgaatgctgggccct Alignment from Spaln_nt2Genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTT-CTTCTTTTGTGCCCGAGATGTGGCCACTG atggtccagaatcctcattagcctactcgccgggctttctctctctgcagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTCTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCCTTCTTTTGTGCACGAGATGTGGCAACTGgtaagtcggtacaagatagatcaagggactgagtctgaatgctgggccct Alignment from Pairagon GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTT-CTTCTTTTGTGCCCGAGATGTGGCCACTG atggtccagaatcctcattagcctactcgccgggctttctctctctgcagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTCTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCCTTCTTTTGTGCACGAGATGTGGCAACTGgtaagtcggtacaagatagatcaagggactgagtctgaatgctgggccct Alignment from Exonerate_protein2genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTC-TTCTTTTGTGCCCGAGATGTGGCCACTG atggtccagaatcctcattagcctactcgccgggctttctctctctgcagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTCTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCCTTCTTTTGTGCACGAGATGTGGCAACTGgtaagtcggtacaagatagatcaagggactgagtctgaatgctgggccct Alignment from Exonerate_coding2genome GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCTTTC-TTCTTTTGTGCCCGAGATGTGGCCACTG atggtccagaatcctcattagcctactcgccgggctttctctctctgcagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTCTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCCTTCTTTTGTGCACGAGATGTGGCAACTGgtaagtcggtacaagatagatcaagggactgagtctgaatgctgggccct Alignment from GeneWise GGCCACAACTGGGTGATTGCATACAGCCGGCCTGTCTACTTCTGTATCTGCTGTCTACTCATCTGGCTGCTGGATGCCCTGGGGACCGCTCAGCCCTTCCCACCTGTCTCTCTGTACGGCCTCACACTCTTCTCTGCCTCT-TTCTTCTTTTGTGCCCGAGATGTGGCCACTG atggtccagaatcctcattagcctactcgccgggctttctctctctgcagGGTCACAACTGGGTGATTGCATACAGCCGTCCTGTCTACTTTTGTATTTGTTGCCTGCTCATCTGGTTGCTGGATGCCCTTGGGACCACTCAACCCTTCCCACCTGTTTCTCTGTATGGCCTAACCCTCTTTTCTGCCTCTTTCCTTCTTTTGTGCACGAGATGTGGCAACTGgtaagtcggtacaagatagatcaagggactgagtctgaatgctgggccct #### Pcnxl3_ID1188_5 --> 2 - 1 Original Alignment acATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCC-CAAGAGAAACTGa ccatgattggaagaagactggttagaatggaacattccttccacccacagacATCAAGGAGCTGGTACGGGAGCAGAGCAGCAACAATGTAATTGTTACGTCTGCAGGCCGAGAAATGCTGAGGCTCAGCTCCCAAGGAGAAACTGagtgagtggcaagctggcaagcacatctgctgtgataacagtcatcctcat Alignment from CESAR acATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAA-GAGAAACTGa ccatgattggaagaagactggttagaatggaacattccttccacccacagacATCAAGGAGCTGGTACGGGAGCAGAGCAGCAACAATGTAATTGTTACGTCTGCAGGCCGAGAAATGCTGAGGCTCAGCTCCCAAGGAGAAACTGagtgagtggcaagctggcaagcacatctgctgtgataacagtcatcctcat Alignment from Spaln_aa2Genome ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAA-GAGAAACTGA ccatgattggaagaagactggttagaatggaacattccttccacccacagACATCAAGGAGCTGGTACGGGAGCAGAGCAGCAACAATGTAATTGTTACGTCTGCAGGCCGAGAAATGCTGAGGCTCAGCTCCCAAgGAGAAACTGAgtgagtggcaagctggcaagcacatctgctgtgataacagtcatcctcat Alignment from Spaln_nt2Genome ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAAG-AGAAACTGA ccatgattggaagaagactggttagaatggaacattccttccacccacagACATCAAGGAGCTGGTACGGGAGCAGAGCAGCAACAATGTAATTGTTACGTCTGCAGGCCGAGAAATGCTGAGGCTCAGCTCCCAAGGAGAAACTGAgtgagtggcaagctggcaagcacatctgctgtgataacagtcatcctcat Alignment from Pairagon ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAA-GAGAAACTGA ccatgattggaagaagactggttagaatggaacattccttccacccacagACATCAAGGAGCTGGTACGGGAGCAGAGCAGCAACAATGTAATTGTTACGTCTGCAGGCCGAGAAATGCTGAGGCTCAGCTCCCAAGGAGAAACTGAgtgagtggcaagctggcaagcacatctgctgtgataacagtcatcctcat Alignment from Exonerate_protein2genome ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAA-GAGAAACTGA ccatgattggaagaagactggttagaatggaacattccttccacccacagACATCAAGGAGCTGGTACGGGAGCAGAGCAGCAACAATGTAATTGTTACGTCTGCAGGCCGAGAAATGCTGAGGCTCAGCTCCCAAGGAGAAACTGAgtgagtggcaagctggcaagcacatctgctgtgataacagtcatcctcat Alignment from Exonerate_coding2genome ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAA-GAGAAACTGA ccatgattggaagaagactggttagaatggaacattccttccacccacagACATCAAGGAGCTGGTACGGGAGCAGAGCAGCAACAATGTAATTGTTACGTCTGCAGGCCGAGAAATGCTGAGGCTCAGCTCCCAAGGAGAAACTGAgtgagtggcaagctggcaagcacatctgctgtgataacagtcatcctcat Alignment from GeneWise ACATCAAGGAGCTGGTACGGGAACAGGGCAGCAACAACGTGATCGTGACCTCTGCCGATCGAGAAATGCTGAAGCTCAGCTCCCAA-GAGAAACTGA ccatgattggaagaagactggttagaatggaacattccttccacccacagACATCAAGGAGCTGGTACGGGAGCAGAGCAGCAACAATGTAATTGTTACGTCTGCAGGCCGAGAAATGCTGAGGCTCAGCTCCCAAGGAGAAACTGAgtgagtggcaagctggcaagcacatctgctgtgataacagtcatcctcat #### Pcnxl3_ID1190_3 --> 1 - 0 Original Alignment gGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTA-CGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG aacataactgacaagataggaacataatttttgtgttttgtttcacttaggGATCCTGGTATAGAGACGACAGTGTTTCAGAAAGTTAGTTCCTCACCTCCTGTACCACTGCAGTTTCCAGCGTTCTGAAATAGGATTTAACCATGTGTCGgtaagaaggctcccccttttgctggcatcagagtctgccatgggtgttgg Alignment from CESAR gGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTA-CGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG aacataactgacaagataggaacataatttttgtgttttgtttcacttaggGATCCTGGTATAGAGACGACAGTGTTTCAGAAAGTTAGTTCCTCACCTCCTGTACCACTGCAGTTTCCAGCGTTCTGAAATAGGATTTAACCATGTGTCGgtaagaaggctcccccttttgctggcatcagagtctgccatgggtgttgg Alignment from Spaln_aa2Genome GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTA-CGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG aacataactgacaagataggaacataatttttgtgttttgtttcacttagGGATCCTGGTATAGAGACGACAGTGTTTCAGAAAGTTAGTTCCTCACCTCCTGTAcCACTGCAGTTTCCAGCGTTCTGAAATAGGATTTAACCATGTGTCGgtaagaaggctcccccttttgctggcatcagagtctgccatgggtgttgg Alignment from Spaln_nt2Genome GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACG-CTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG aacataactgacaagataggaacataatttttgtgttttgtttcacttagGGATCCTGGTATAGAGACGACAGTGTTTCAGAAAGTTAGTTCCTCACCTCCTGTACCACTGCAGTTTCCAGCGTTCTGAAATAGGATTTAACCATGTGTCGgtaagaaggctcccccttttgctggcatcagagtctgccatgggtgttgg Alignment from Pairagon GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTA-CGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG aacataactgacaagataggaacataatttttgtgttttgtttcacttagGGATCCTGGTATAGAGACGACAGTGTTTCAGAAAGTTAGTTCCTCACCTCCTGTACCACTGCAGTTTCCAGCGTTCTGAAATAGGATTTAACCATGTGTCGgtaagaaggctcccccttttgctggcatcagagtctgccatgggtgttgg Alignment from Exonerate_protein2genome GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTA-CGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG aacataactgacaagataggaacataatttttgtgttttgtttcacttagGGATCCTGGTATAGAGACGACAGTGTTTCAGAAAGTTAGTTCCTCACCTCCTGTACCACTGCAGTTTCCAGCGTTCTGAAATAGGATTTAACCATGTGTCGgtaagaaggctcccccttttgctggcatcagagtctgccatgggtgttgg Alignment from Exonerate_coding2genome aacataactgacaagataggaacataatttttgtgttttgtttcacttagggatcctggtatagagacgacagtgtttcagaaagttagttcctcacctcctgtaccactgcagtttccagcgttctgaaataggatttaaccatgtgtcggtaagaaggctcccccttttgctggcatcagagtctgccatgggtgttgg Alignment from GeneWise GGACCCTGGTGTGGAGATGACGGTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTA-CGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG aacataactgacaagataggaacataatttttgtgttttgtttcacttagGGATCCTGGTATAGAGACGACAGTGTTTCAGAAAGTTAGTTCCTCACCTCCTGTACCACTGCAGTTTCCAGCGTTCTGAAATAGGATTTAACCATGTGTCGgtaagaaggctcccccttttgctggcatcagagtctgccatgggtgttgg #### Pcx_ID556_6 --> 0 - 1 Original Alignment GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAG-GCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAg cacatccaaaatgctgcctcatgcctgctcacttggtctcttttccacagGAGCTAGAGGAGAATTATACCCGAGCCTACTCCGAGCGCCTTGGCAGCTTTTGGGAACAGAGCACTGTTTGTCGAGAAGTTTATTGGACAGCCAAGCCACATTGAGGTGCAGATCCTAggtgagtgaggaactgtctgcaactgcccgacacatctgagaccttgccat Alignment from CESAR GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAG-GCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAg cacatccaaaatgctgcctcatgcctgctcacttggtctcttttccacagGAGCTAGAGGAGAATTATACCCGAGCCTACTCCGAGCGCCTTGGCAGCTTTTGGGAACAGAGCACTGTTTGTCGAGAAGTTTATTGGACAGCCAAGCCACATTGAGGTGCAGATCCTAggtgagtgaggaactgtctgcaactgcccgacacatctgagaccttgccat Alignment from Spaln_aa2Genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAG-GCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG cacatccaaaatgctgcctcatgcctgctcacttggtctcttttccacagGAGCTAGAGGAGAATTATACCCGAGCCTACTCCGAGcGCCTTGGCAGCTTTTGGGAACAGAGCACTGTTTGTCGAGAAGTTTATTGGACAGCCAAGCCACATTGAGGTGCAGATCCTAGgtgagtgaggaactgtctgcaactgcccgacacatctgagaccttgccat Alignment from Spaln_nt2Genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAG-GCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG cacatccaaaatgctgcctcatgcctgctcacttggtctcttttccacagGAGCTAGAGGAGAATTATACCCGAGCCTACTCCGAGCGCCTTGGCAGCTTTTGGGAACAGAGCACTGTTTGTCGAGAAGTTTATTGGACAGCCAAGCCACATTGAGGTGCAGATCCTAGgtgagtgaggaactgtctgcaactgcccgacacatctgagaccttgccat Alignment from Pairagon GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAG-GCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG cacatccaaaatgctgcctcatgcctgctcacttggtctcttttccacagGAGCTAGAGGAGAATTATACCCGAGCCTACTCCGAGCGCCTTGGCAGCTTTTGGGAACAGAGCACTGTTTGTCGAGAAGTTTATTGGACAGCCAAGCCACATTGAGGTGCAGATCCTAGgtgagtgaggaactgtctgcaactgcccgacacatctgagaccttgccat Alignment from Exonerate_protein2genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAG-GCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG cacatccaaaatgctgcctcatgcctgctcacttggtctcttttccacagGAGCTAGAGGAGAATTATACCCGAGCCTACTCCGAGCGCCTTGGCAGCTTTTGGGAACAGAGCACTGTTTGTCGAGAAGTTTATTGGACAGCCAAGCCACATTGAGGTGCAGATCCTAGgtgagtgaggaactgtctgcaactgcccgacacatctgagaccttgccat Alignment from Exonerate_coding2genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAG-GCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG cacatccaaaatgctgcctcatgcctgctcacttggtctcttttccacagGAGCTAGAGGAGAATTATACCCGAGCCTACTCCGAGCGCCTTGGCAGCTTTTGGGAACAGAGCACTGTTTGTCGAGAAGTTTATTGGACAGCCAAGCCACATTGAGGTGCAGATCCTAGgtgagtgaggaactgtctgcaactgcccgacacatctgagaccttgccat Alignment from GeneWise GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAG-GCCTTGGCAGCCTTTGGGAATGGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG cacatccaaaatgctgcctcatgcctgctcacttggtctcttttccacagGAGCTAGAGGAGAATTATACCCGAGCCTACTCCGAGCGCCTTGGCAGCTTTTGGGAACAGAGCACTGTTTGTCGAGAAGTTTATTGGACAGCCAAGCCACATTGAGGTGCAGATCCTAGgtgagtgaggaactgtctgcaactgcccgacacatctgagaccttgccat #### Pcx_ID563_12 --> 2 - 1 Original Alignment gaCATGTCATGGTGAATGGCCCT-ACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAg tctctggactcccagaagcagccgtgacgcccaccttctctcctgcacaggaCATGTTATGGTTAATGGCCCTCACCACCCCAATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCAGTTCCTGCAGTCCCTATAggtaagttatggtacctgtttatatcttaatgagaagatgtgggatggttt Alignment from CESAR gaCATGTCATGGTGAATGGCCCT-ACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAg tctctggactcccagaagcagccgtgacgcccaccttctctcctgcacaggaCATGTTATGGTTAATGGCCCTCACCACCCCAATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCAGTTCCTGCAGTCCCTATAggtaagttatggtacctgtttatatcttaatgagaagatgtgggatggttt Alignment from Spaln_aa2Genome GACATGTCATGGTGAATGGCCCT-ACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG tctctggactcccagaagcagccgtgacgcccaccttctctcctgcacagGACATGTTATGGTTAATGGCCCTcACCACCCCAATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCAGTTCCTGCAGTCCCTATAGgtaagttatggtacctgtttatatcttaatgagaagatgtgggatggttt Alignment from Spaln_nt2Genome GACATGTCATGGTGAATGGCCCT-ACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG tctctggactcccagaagcagccgtgacgcccaccttctctcctgcacagGACATGTTATGGTTAATGGCCCTCACCACCCCAATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCAGTTCCTGCAGTCCCTATAGgtaagttatggtacctgtttatatcttaatgagaagatgtgggatggttt Alignment from Pairagon GACATGTCATGGTGAATGGCCCT-ACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG tctctggactcccagaagcagccgtgacgcccaccttctctcctgcacagGACATGTTATGGTTAATGGCCCTCACCACCCCAATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCAGTTCCTGCAGTCCCTATAGgtaagttatggtacctgtttatatcttaatgagaagatgtgggatggttt Alignment from Exonerate_protein2genome GACATGTCATGGTGAATGGCCCT-ACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG tctctggactcccagaagcagccgtgacgcccaccttctctcctgcacagGACATGTTATGGTTAATGGCCCTCACCACCCCAATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCAGTTCCTGCAGTCCCTATAGgtaagttatggtacctgtttatatcttaatgagaagatgtgggatggttt Alignment from Exonerate_coding2genome GACATGTCATGGTGAATGGCCCT-ACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG tctctggactcccagaagcagccgtgacgcccaccttctctcctgcacagGACATGTTATGGTTAATGGCCCTCACCACCCCAATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCAGTTCCTGCAGTCCCTATAGgtaagttatggtacctgtttatatcttaatgagaagatgtgggatggttt Alignment from GeneWise GACATGTCATGGTGAATGGCCCT-ACCACTCCAATCCCTGTCAATGTGAGCCCCAGTCCTGTGGATCCTGCTGTTCCTGTGGTGCCCATAG tctctggactcccagaagcagccgtgacgcccaccttctctcctgcacagGACATGTTATGGTTAATGGCCCTCACCACCCCAATCCCAGTCAATGTGACCCCCAGTCCTGTAGATCCTGCAGTTCCTGCAGTCCCTATAGgtaagttatggtacctgtttatatcttaatgagaagatgtgggatggttt #### Pcx_ID565_14 --> 1 - 0 Original Alignment gTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGT-GTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aaagaattataggagtcagaaacatatcgttccccatgcctgtgtctcaggTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGTGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGGGTATGAAAGCAGCGGGCAGTGCTGGGGCTCGTGGTGGAGGCTGCCATCTCCTACACTGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATATTGTGCATTAAGgtcggcgggctattcagtgtgtctctctcttttgatcataattcattttt Alignment from CESAR gTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGT-GTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aaagaattataggagtcagaaacatatcgttccccatgcctgtgtctcaggTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGTGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGGGTATGAAAGCAGCGGGCAGTGCTGGGGCTCGTGGTGGAGGCTGCCATCTCCTACACTGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATATTGTGCATTAAGgtcggcgggctattcagtgtgtctctctcttttgatcataattgccaccg Alignment from Spaln_aa2Genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGT-GTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aaagaattataggagtcagaaacatatcgttccccatgcctgtgtctcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGTGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGGGTATGAAAGCAGCGGGCAGTGCTGGGGCTcGTGGTGGAGGCTGCCATCTCCTACACTGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATATTGTGCATTAAGgtcggcgggctattcagtgtgtctctctcttttgatcataattcattttt Alignment from Spaln_nt2Genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGT-GTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aaagaattataggagtcagaaacatatcgttccccatgcctgtgtctcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGTGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGGGTATGAAAGCAGCGGGCAGTGCTGGGGCTCGTGGTGGAGGCTGCCATCTCCTACACTGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATATTGTGCATTAAGgtcggcgggctattcagtgtgtctctctcttttgatcataattcattttt Alignment from Pairagon GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGT-GTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aaagaattataggagtcagaaacatatcgttccccatgcctgtgtctcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGTGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGGGTATGAAAGCAGCGGGCAGTGCTGGGGCTCGTGGTGGAGGCTGCCATCTCCTACACTGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATATTGTGCATTAAGgtcggcgggctattcagtgtgtctctctcttttgatcataattcattttt Alignment from Exonerate_protein2genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGT-GTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aaagaattataggagtcagaaacatatcgttccccatgcctgtgtctcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGTGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGGGTATGAAAGCAGCGGGCAGTGCTGGGGCTCGTGGTGGAGGCTGCCATCTCCTACACTGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATATTGTGCATTAAGgtcggcgggctattcagtgtgtctctctcttttgatcataattcattttt Alignment from Exonerate_coding2genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGT-GTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aaagaattataggagtcagaaacatatcgttccccatgcctgtgtctcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGTGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGGGTATGAAAGCAGCGGGCAGTGCTGGGGCTCGTGGTGGAGGCTGCCATCTCCTACACTGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATATTGTGCATTAAGgtcggcgggctattcagtgtgtctctctcttttgatcataattcattttt Alignment from GeneWise GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGG-GGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGCACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aaagaattataggagtcagaaacatatcgttccccatgcctgtgtctcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGTGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGGGTATGAAAGCAGCGGGCAGTGCTGGGGCTCGTGGTGGAGGCTGCCATCTCCTACACTGGGGATGTGGCTGACCCTGGTCGCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATATTGTGCATTAAGgtcggcgggctattcagtgtgtctctctcttttgatcataattcattttt #### Pcx_ID566_15 --> 0 - 1 Original Alignment GACATGGCGGGCCTG-CTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAg agtgtgtctctctcttttgatcataattgccaccgtctttcccatcccagGGCATAGCAGGCCTGCCTGAAGCCGGCTGCCTGCACAATGCTAGTCAGTTCCCTGTGGGACCGCTCACCCGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGGGCAGGTGTCGCAGCCACGCTGGCTTGTGCACAGGCAGGGGCCGATGTTGTAGAAGTGGTTGCAGTAGATGCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAGACAggtaggtcaaaagactgacttaacagctgaatgactcaagatagcactgca Alignment from CESAR GACATGGCGGGCCTG-CTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAg agtgtgtctctctcttttgatcataattgccaccgtctttcccatcccagGGCATAGCAGGCCTGCCTGAAGCCGGCTGCCTGCACAATGCTAGTCAGTTCCCTGTGGGACCGCTCACCCGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGGGCAGGTGTCGCAGCCACGCTGGCTTGTGCACAGGCAGGGGCCGATGTTGTAGAAGTGGTTGCAGTAGATGCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAGACAggtaggtcaaaagactgacttaacagctgaatgactcaagatagcactgca Alignment from Spaln_aa2Genome AAG CCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG AGTgtgtctctctcttttgatcataattgccaccgtctttcccatcccagggcatagcaggcctgcctgaagCCGGCTGCCTGCACAATGCTAGTCAGTTCCCTGTGGGACCGCTCACCCGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGGGCAGGTGTCGCAGCCACGCTGGCTTGTGCACAGGCAGGGGCCGATGTTGTAGAAGTGGTTGCAGTAGATGCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAGACAGgtaggtcaaaagactgacttaacagctgaatgactcaagatagcactgca Alignment from Spaln_nt2Genome GACATGGCGGGCCTGC-TGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTGG---CAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG agtgtgtctctctcttttgatcataattgccaccgtctttcccatcccagGGCATAGCAGGCCTGCCTGAAGCCGGCTGCCTGCACAATGCTAGTCAGTTCCCTGTGGGACCGCTCACCCGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGGGCAGGTGTCGCAGCCACGCTGGCTTGTGCACAGGCAGGGGCCGATGTTGTAGAAGTGGTTGCAGTAGATGCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAGACAGgtaggtcaaaagactgacttaacagctgaatgactcaagatagcactgca Alignment from Pairagon GACATGGCGGGCCTG-CTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG agtgtgtctctctcttttgatcataattgccaccgtctttcccatcccagGGCATAGCAGGCCTGCCTGAAGCCGGCTGCCTGCACAATGCTAGTCAGTTCCCTGTGGGACCGCTCACCCGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGGGCAGGTGTCGCAGCCACGCTGGCTTGTGCACAGGCAGGGGCCGATGTTGTAGAAGTGGTTGCAGTAGATGCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAGACAGgtaggtcaaaagactgacttaacagctgaatgactcaagatagcactgca Alignment from Exonerate_protein2genome GACATGGCGGGCCTG-CTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG agtgtgtctctctcttttgatcataattgccaccgtctttcccatcccagGGCATAGCAGGCCTGCCTGAAGCCGGCTGCCTGCACAATGCTAGTCAGTTCCCTGTGGGACCGCTCACCCGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGGGCAGGTGTCGCAGCCACGCTGGCTTGTGCACAGGCAGGGGCCGATGTTGTAGAAGTGGTTGCAGTAGATGCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAGACAGgtaggtcaaaagactgacttaacagctgaatgactcaagatagcactgca Alignment from Exonerate_coding2genome GACATGGCGGGCCTG-CTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG agtgtgtctctctcttttgatcataattgccaccgtctttcccatcccagGGCATAGCAGGCCTGCCTGAAGCCGGCTGCCTGCACAATGCTAGTCAGTTCCCTGTGGGACCGCTCACCCGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGGGCAGGTGTCGCAGCCACGCTGGCTTGTGCACAGGCAGGGGCCGATGTTGTAGAAGTGGTTGCAGTAGATGCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAGACAGgtaggtcaaaagactgacttaacagctgaatgactcaagatagcactgca Alignment from GeneWise AAG CCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGGATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG AGTgtgtctctctcttttgatcataattgccaccgtctttcccatcccagggcatagcaggcctgcctgaagCCGGCTGCCTGCACAATGCTAGTCAGTTCCCTGTGGGACCGCTCACCCGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGGGCAGGTGTCGCAGCCACGCTGGCTTGTGCACAGGCAGGGGCCGATGTTGTAGAAGTGGTTGCAGTAGATGCCATGTCAGGGATGACCTCACAGCCAAGCATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAGACAGgtaggtcaaaagactgacttaacagctgaatgactcaagatagcactgca #### Pdcd11_ID10134_28 --> 1 - 0 Original Alignment cGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAA-AGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggttgcccagacaccttctcccccatcccttaaatattcatttttttcagcATCAATCCCATGAAGAACCTGATAGAGTTGTCCCTCCTTCCAAGTGACACTGGGAGGCCAGATGTTTCCTCTCCTGCCCCAGAACCAAAACAAGAGGAAGGGAGCGGAGGGGCTGAGGGGGGCCAAAAACAAGAAGGAGAAGAATCAGAAGAGACGGGATGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtaagtcaggcagtatgtattgcctcatctcactcaggagacatgggaca Alignment from CESAR cGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAA-AGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggttgcccagacaccttctcccccatcccttaaatattcatttttttcagcATCAATCCCATGAAGAACCTGATAGAGTTGTCCCTCCTTCCAAGTGACACTGGGAGGCCAGATGTTTCCTCTCCTGCCCCAGAACCAAAACAAGAGGAAGGGAGCGGAGGGGCTGAGGGGGGCCAAAAACAAGAAGGAGAAGAATCAGAAGAGACGGGATGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtaagtcaggcagtatgtattgcctcatctcactcaggagacatgggaca Alignment from Spaln_aa2Genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAA-AGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggttgcccagacaccttctcccccatcccttaaatattcatttttttcagCATCAATCCCATGAAGAACCTGATAGAGTTGTCCCTCCTTCCAAGTGACACTGGGAGGCCAGATGTTTCCTCTCCTGCCCCAGAACCAAAACAAGAGGAAGGGAGCGGAGGGGCTGAGGGGGGCCAAAAAcAAGAAGGAGAAGAATCAGAAGAGACGGGATGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtaagtcaggcagtatgtattgcctcatctcactcaggagacatgggaca Alignment from Spaln_nt2Genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAA-AGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggttgcccagacaccttctcccccatcccttaaatattcatttttttcagCATCAATCCCATGAAGAACCTGATAGAGTTGTCCCTCCTTCCAAGTGACACTGGGAGGCCAGATGTTTCCTCTCCTGCCCCAGAACCAAAACAAGAGGAAGGGAGCGGAGGGGCTGAGGGGGGCCAAAAACAAGAAGGAGAAGAATCAGAAGAGACGGGATGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtaagtcaggcagtatgtattgcctcatctcactcaggagacatgggaca Alignment from Pairagon CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAA-AGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggttgcccagacaccttctcccccatcccttaaatattcatttttttcagCATCAATCCCATGAAGAACCTGATAGAGTTGTCCCTCCTTCCAAGTGACACTGGGAGGCCAGATGTTTCCTCTCCTGCCCCAGAACCAAAACAAGAGGAAGGGAGCGGAGGGGCTGAGGGGGGCCAAAAACAAGAAGGAGAAGAATCAGAAGAGACGGGATGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtaagtcaggcagtatgtattgcctcatctcactcaggagacatgggaca Alignment from Exonerate_protein2genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAA-AGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggttgcccagacaccttctcccccatcccttaaatattcatttttttcagCATCAATCCCATGAAGAACCTGATAGAGTTGTCCCTCCTTCCAAGTGACACTGGGAGGCCAGATGTTTCCTCTCCTGCCCCAGAACCAAAACAAGAGGAAGGGAGCGGAGGGGCTGAGGGGGGCCAAAAACAAGAAGGAGAAGAATCAGAAGAGACGGGATGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtaagtcaggcagtatgtattgcctcatctcactcaggagacatgggaca Alignment from Exonerate_coding2genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAA-AGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggttgcccagacaccttctcccccatcccttaaatattcatttttttcagCATCAATCCCATGAAGAACCTGATAGAGTTGTCCCTCCTTCCAAGTGACACTGGGAGGCCAGATGTTTCCTCTCCTGCCCCAGAACCAAAACAAGAGGAAGGGAGCGGAGGGGCTGAGGGGGGCCAAAAACAAGAAGGAGAAGAATCAGAAGAGACGGGATGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtaagtcaggcagtatgtattgcctcatctcactcaggagacatgggaca Alignment from GeneWise CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAA-AGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggttgcccagacaccttctcccccatcccttaaatattcatttttttcagCATCAATCCCATGAAGAACCTGATAGAGTTGTCCCTCCTTCCAAGTGACACTGGGAGGCCAGATGTTTCCTCTCCTGCCCCAGAACCAAAACAAGAGGAAGGGAGCGGAGGGGCTGAGGGGGGCCAAAAACAAGAAGGAGAAGAATCAGAAGAGACGGGATGAGAAGGAAGAGCCACAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtaagtcaggcagtatgtattgcctcatctcactcaggagacatgggaca #### Pdcd11_ID10138_32 --> 1 - 0 Original Alignment aGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTG-GAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG aaggcctccaaggcagacatggtaaacagtttatgctcctcttatttcaggGAAGAGCAGGAGAAGCTGAATATATGGGTAGCCTTGCTAAATTTGCGAAAACAAGTATGGCTCCCAGGCATCGTTGACAAATGTTTTTGATCAAGCTGTCCAGTACAATGAATCTCTTAAGGTTTTTCTGCACCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtgaggtgttaggatccgtacccaaagtaccccaggtacaagtgctttaa Alignment from CESAR aGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTG-GAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG aaggcctccaaggcagacatggtaaacagtttatgctcctcttatttcaggGAAGAGCAGGAGAAGCTGAATATATGGGTAGCCTTGCTAAATTTGCGAAAACAAGTATGGCTCCCAGGCATCGTTGACAAATGTTTTTGATCAAGCTGTCCAGTACAATGAATCTCTTAAGGTTTTTCTGCACCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtgaggtgttaggatccgtacccaaagtaccccaggtacaagtgctttaa Alignment from Spaln_aa2Genome AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTG-GAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG aaggcctccaaggcagacatggtaaacagtttatgctcctcttatttcagGGAAGAGCAGGAGAAGCTGAATATATGGGTAGCCTTGCTAAATTTGcGAAAACAAGTATGGCTCCCAGGCATCGTTGACAAATGTTTTTGATCAAGCTGTCCAGTACAATGAATCTCTTAAGGTTTTTCTGCACCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtgaggtgttaggatccgtacccaaagtaccccaggtacaagtgctttaa Alignment from Spaln_nt2Genome AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTG-GAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG aaggcctccaaggcagacatggtaaacagtttatgctcctcttatttcagGGAAGAGCAGGAGAAGCTGAATATATGGGTAGCCTTGCTAAATTTGCGAAAACAAGTATGGCTCCCAGGCATCGTTGACAAATGTTTTTGATCAAGCTGTCCAGTACAATGAATCTCTTAAGGTTTTTCTGCACCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtgaggtgttaggatccgtacccaaagtaccccaggtacaagtgctttaa Alignment from Pairagon AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTG-GAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG aaggcctccaaggcagacatggtaaacagtttatgctcctcttatttcagGGAAGAGCAGGAGAAGCTGAATATATGGGTAGCCTTGCTAAATTTGCGAAAACAAGTATGGCTCCCAGGCATCGTTGACAAATGTTTTTGATCAAGCTGTCCAGTACAATGAATCTCTTAAGGTTTTTCTGCACCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtgaggtgttaggatccgtacccaaagtaccccaggtacaagtgctttaa Alignment from Exonerate_protein2genome AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTG-GAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG aaggcctccaaggcagacatggtaaacagtttatgctcctcttatttcagGGAAGAGCAGGAGAAGCTGAATATATGGGTAGCCTTGCTAAATTTGCGAAAACAAGTATGGCTCCCAGGCATCGTTGACAAATGTTTTTGATCAAGCTGTCCAGTACAATGAATCTCTTAAGGTTTTTCTGCACCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtgaggtgttaggatccgtacccaaagtaccccaggtacaagtgctttaa Alignment from Exonerate_coding2genome AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAACCTG-GAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG aaggcctccaaggcagacatggtaaacagtttatgctcctcttatttcagGGAAGAGCAGGAGAAGCTGAATATATGGGTAGCCTTGCTAAATTTGCGAAAACAAGTATGGCTCCCAGGCATCGTTGACAAATGTTTTTGATCAAGCTGTCCAGTACAATGAATCTCTTAAGGTTTTTCTGCACCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtgaggtgttaggatccgtacccaaagtaccccaggtacaagtgctttaa Alignment from GeneWise AGAGGAGCAGGAGAAGCTGAACGTGTGGGTGGCCCTGCTGAAC-CTGGAAAACATGTACGGCTCTCAGGAGTCCCTGACTAAGGTCTTCGAGCGAGCTGTGCAGTACAACGAGCCTCTCAAGGTTTTCCTGCATCTGGCTGACATCTACACCAAGTCCGAGAAATACAAG aaggcctccaaggcagacatggtaaacagtttatgctcctcttatttcagGGAAGAGCAGGAGAAGCTGAATATATGGGTAGCCTTGCTAAATTTGCGAAAACAAGTATGGCTCCCAGGCATCGTTGACAAATGTTTTTGATCAAGCTGTCCAGTACAATGAATCTCTTAAGGTTTTTCTGCACCTGGCTGACATCTACACCAAGTCCAAGAAATACAAGgtgaggtgttaggatccgtacccaaagtaccccaggtacaagtgctttaa #### Pdcd11_ID10140_34 --> 2 - 2 Original Alignment atGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGC-ACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCag tctaatcagccactcttggggtcttgccctctgtttcctcctgagtgaagatGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGATGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTCGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTGACATGACCATCAAGCATGGCAGCCATACAGCAGTCaggtgagtgcaacaacagggataattgcaacagagcaaggggtaggaggtga Alignment from CESAR atGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGC-ACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCag tctaatcagccactcttggggtcttgccctctgtttcctcctgagtgaagatGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGATGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTCGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTGACATGACCATCAAGCATGGCAGCCATACAGCAGTCaggtgagtgcaacaacagggataattgcaacagagcaaggggtaggaggtga Alignment from Spaln_aa2Genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGC-ACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG tctaatcagccactcttggggtcttgccctctgtttcctcctgagtgaagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGATGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTcGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTGACATGACCATCAAGCATGGCAGCCATACAGCAGTCAGgtgagtgcaacaacagggataattgcaacagagcaaggggtaggaggtga Alignment from Spaln_nt2Genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAG-CACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG tctaatcagccactcttggggtcttgccctctgtttcctcctgagtgaagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGATGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTCGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTGACATGACCATCAAGCATGGCAGCCATACAGCAGTCAGgtgagtgcaacaacagggataattgcaacagagcaaggggtaggaggtga Alignment from Pairagon ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAG-CACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG tctaatcagccactcttggggtcttgccctctgtttcctcctgagtgaagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGATGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTCGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTGACATGACCATCAAGCATGGCAGCCATACAGCAGTCAGgtgagtgcaacaacagggataattgcaacagagcaaggggtaggaggtga Alignment from Exonerate_protein2genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGC-ACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG tctaatcagccactcttggggtcttgccctctgtttcctcctgagtgaagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGATGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTCGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTGACATGACCATCAAGCATGGCAGCCATACAGCAGTCAGgtgagtgcaacaacagggataattgcaacagagcaaggggtaggaggtga Alignment from Exonerate_coding2genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGC-ACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG tctaatcagccactcttggggtcttgccctctgtttcctcctgagtgaagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGATGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTCGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTGACATGACCATCAAGCATGGCAGCCATACAGCAGTCAGgtgagtgcaacaacagggataattgcaacagagcaaggggtaggaggtga Alignment from GeneWise ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGC-ACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG tctaatcagccactcttggggtcttgccctctgtttcctcctgagtgaagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAGCTTGGGGATGTGAAGCGAGCTAAAGCCATTTTTGAAAACACACTGAGTCGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTGACATGACCATCAAGCATGGCAGCCATACAGCAGTCAGgtgagtgcaacaacagggataattgcaacagagcaaggggtaggaggtga #### Pdcd4_ID11402_9 --> 0 - 0 Original Alignment GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATTC-AAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA gatgagttgtttaccataggttgattcagcgcctgtcctgtgttccccagGCCATTGTGATGGTGTTAGAGTCAACTGGGGAGAGTGCATTTCAAGATGATCTTAGATTTATTTAAGTCTCTATGGAAGTCTTCTACAATTACTATAGACCAAATGAAACGAgtatgtgttattcactagggagggatagtcttattattaattaagatgtg Alignment from CESAR GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCA-TTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA gatgagttgtttaccataggttgattcagcgcctgtcctgtgttccccagGCCATTGTGATGGTGTTAGAGTCAACTGGGGAGAGTGCATTTCAAGATGATCTTAGATTTATTTAAGTCTCTATGGAAGTCTTCTACAATTACTATAGACCAAATGAAACGAgtatgtgttattcactagggagggatagtcttattattaattaagatgtg Alignment from Spaln_aa2Genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCA-TTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA gatgagttgtttaccataggttgattcagcgcctgtcctgtgttccccagGCCATTGTGATGGTGTTAGAGTCAACTGGGGAGAGTGCAtTTCAAGATGATCTTAGATTTATTTAAGTCTCTATGGAAGTCTTCTACAATTACTATAGACCAAATGAAACGAgtatgtgttattcactagggagggatagtcttattattaattaagatgtg Alignment from Spaln_nt2Genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCATT-CAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA gatgagttgtttaccataggttgattcagcgcctgtcctgtgttccccagGCCATTGTGATGGTGTTAGAGTCAACTGGGGAGAGTGCATTTCAAGATGATCTTAGATTTATTTAAGTCTCTATGGAAGTCTTCTACAATTACTATAGACCAAATGAAACGAgtatgtgttattcactagggagggatagtcttattattaattaagatgtg Alignment from Pairagon GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCA-TTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA gatgagttgtttaccataggttgattcagcgcctgtcctgtgttccccagGCCATTGTGATGGTGTTAGAGTCAACTGGGGAGAGTGCATTTCAAGATGATCTTAGATTTATTTAAGTCTCTATGGAAGTCTTCTACAATTACTATAGACCAAATGAAACGAgtatgtgttattcactagggagggatagtcttattattaattaagatgtg Alignment from Exonerate_protein2genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCA-TTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA gatgagttgtttaccataggttgattcagcgcctgtcctgtgttccccagGCCATTGTGATGGTGTTAGAGTCAACTGGGGAGAGTGCATTTCAAGATGATCTTAGATTTATTTAAGTCTCTATGGAAGTCTTCTACAATTACTATAGACCAAATGAAACGAgtatgtgttattcactagggagggatagtcttattattaattaagatgtg Alignment from Exonerate_coding2genome GCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGTGCA-TTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA gatgagttgtttaccataggttgattcagcgcctgtcctgtgttccccagGCCATTGTGATGGTGTTAGAGTCAACTGGGGAGAGTGCATTTCAAGATGATCTTAGATTTATTTAAGTCTCTATGGAAGTCTTCTACAATTACTATAGACCAAATGAAACGAgtatgtgttattcactagggagggatagtcttattattaattaagatgtg Alignment from GeneWise ------------GTATATGAAGCCATTGTAATGGTTTTAGAGTCAACTGGAGAAAGT-GCATTCAAGATGATCTTAGATTTATTAAAATCCTTGTGGAAGTCTTCTACTATTACCATAGACCAAATGAAAAGA gatgagttgtttaccataggttgattcagCGCCTGTCCTGTGTTCCCCAGGCCATTGTGATGGTGTTAGAGTCAACTGGGGAGAGTGCATTTCAAGATGATCTTAGATTTATTTAAGTCTCTATGGAAGTCTTCTACAATTACTATAGACCAAATGAAACGAgtatgtgttattcactagggagggatagtcttattattaattaagatgtg #### Pde6c_ID7533_3 --> 0 - 0 Original Alignment GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTG-GAGTCCCGGAGAAGCCAG caaacaagccatgggtgtaccacaataacttttaaaaatcaatttttcagGTCTTCTCAAAATACCTCAGCTTTGTTGCTGTTGCACTAAGGCTGAAGCACACCAGTTACCTGTACAGTGTGCGAGTCCCGGCGGAGCCAGgtagagtaatagctacgagaagtctcccctttccaccccaaaacattatc Alignment from CESAR GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTG-GAGTCCCGGAGAAGCCAG caaacaagccatgggtgtaccacaataacttttaaaaatcaatttttcagGTCTTCTCAAAATACCTCAGCTTTGTTGCTGTTGCACTAAGGCTGAAGCACACCAGTTACCTGTACAGTGTGCGAGTCCCGGCGGAGCCAGgtagagtaatagctacgagaagtctcccctttccaccccaaaacattatc Alignment from Spaln_aa2Genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTG-GAGTCCCGGAGAAGCCAG caaacaagccatgggtgtaccacaataacttttaaaaatcaatttttcagGTCTTCTCAAAATACCTCAGCTTTGTTGCTGTTGCACTAAGGCTGAAGCACACCAGTTACCTGTACAGTGTGcGAGTCCCGGCGGAGCCAGgtagagtaatagctacgagaagtctcccctttccaccccaaaacattatc Alignment from Spaln_nt2Genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTG-GAGTCCCGGAGAAGCCAG caaacaagccatgggtgtaccacaataacttttaaaaatcaatttttcagGTCTTCTCAAAATACCTCAGCTTTGTTGCTGTTGCACTAAGGCTGAAGCACACCAGTTACCTGTACAGTGTGCGAGTCCCGGCGGAGCCAGgtagagtaatagctacgagaagtctcccctttccaccccaaaacattatc Alignment from Pairagon GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTG-GAGTCCCGGAGAAGCCAG caaacaagccatgggtgtaccacaataacttttaaaaatcaatttttcagGTCTTCTCAAAATACCTCAGCTTTGTTGCTGTTGCACTAAGGCTGAAGCACACCAGTTACCTGTACAGTGTGCGAGTCCCGGCGGAGCCAGgtagagtaatagctacgagaagtctcccctttccaccccaaaacattatc Alignment from Exonerate_protein2genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTG-GAGTCCCGGAGAAGCCAG caaacaagccatgggtgtaccacaataacttttaaaaatcaatttttcagGTCTTCTCAAAATACCTCAGCTTTGTTGCTGTTGCACTAAGGCTGAAGCACACCAGTTACCTGTACAGTGTGCGAGTCCCGGCGGAGCCAGgtagagtaatagctacgagaagtctcccctttccaccccaaaacattatc Alignment from Exonerate_coding2genome GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTG-GAGTCCCGGAGAAGCCAG caaacaagccatgggtgtaccacaataacttttaaaaatcaatttttcagGTCTTCTCAAAATACCTCAGCTTTGTTGCTGTTGCACTAAGGCTGAAGCACACCAGTTACCTGTACAGTGTGCGAGTCCCGGCGGAGCCAGgtagagtaatagctacgagaagtctcccctttccaccccaaaacattatc Alignment from GeneWise GTCTTTTCTAAGTACCTCAGCTTTGTTGCTGTCGCACTAAGGCTGCAGCACACCAGTTACCTGTACAGTGTGGAG------TCCCGGAGAAGCCAG caaacaagccatgggtgtaccacaataacttttaaaaatcaatttttcagGTCTTCTCAAAATACCTCAGCTTTGTTGCTGTTGCACTAAGGCTGAAGCACACCAGTTACCTGTACAGTGTGCGAGTCCCGGCGGAGCCAGGTAGAgtaatagctacgagaagtctcccctttccaccccaaaacattatc #### Pde6c_ID7536_6 --> 0 - 2 Original Alignment GAAATCATCTTCTATAAAATCATCGATTACATTTTA-CATGGAAAAGAAGAGATCAACGTGATTcc ataccttctatgctatttagtattgcctcccacctgcccctcccctccagGAGATCATATTCTACAAAATTACTGACTACATTTTGCCATGGCAAAGAAGAACTCAATGTGATTccgtatgtggtcacttggagcaggtttacctttctatgtcccaatgatataa Alignment from CESAR GAAATCATCTTCTATAAAATCATCGATTACATTTTA-CATGGAAAAGAAGAGATCAACGTGATTcc ataccttctatgctatttagtattgcctcccacctgcccctcccctccagGAGATCATATTCTACAAAATTACTGACTACATTTTGCCATGGCAAAGAAGAACTCAATGTGATTccgtatgtggtcacttggagcaggtttacctttctatgtcccaatgatataa Alignment from Spaln_aa2Genome GAAATCATCTTCTATAAAATCATCGATTACATTTTA-CATGGAAAAGAAGAGATCAACGTGATTCC ataccttctatgctatttagtattgcctcccacctgcccctcccctccagGAGATCATATTCTACAAAATTACTGACTACATTTTGcCATGGCAAAGAAGAACTCAATGTGATTCCgtatgtggtcacttggagcaggtttacctttctatgtcccaatgatataa Alignment from Spaln_nt2Genome GAAATCATCTTCTATAAAATCATCGATTACATTTTAC-ATGGAAAAGAAGAGATCAACGTGATTCC ataccttctatgctatttagtattgcctcccacctgcccctcccctccagGAGATCATATTCTACAAAATTACTGACTACATTTTGCCATGGCAAAGAAGAACTCAATGTGATTCCgtatgtggtcacttggagcaggtttacctttctatgtcccaatgatataa Alignment from Pairagon GAAATCATCTTCTATAAAATCATCGATTACATTTTA-CATGGAAAAGAAGAGATCAACGTGATTCC ataccttctatgctatttagtattgcctcccacctgcccctcccctccagGAGATCATATTCTACAAAATTACTGACTACATTTTGCCATGGCAAAGAAGAACTCAATGTGATTCCgtatgtggtcacttggagcaggtttacctttctatgtcccaatgatataa Alignment from Exonerate_protein2genome GAAATCATCTTCTATAAAATCATCGATTACATTTTA-CATGGAAAAGAAGAGATCAACGTGATTCC ataccttctatgctatttagtattgcctcccacctgcccctcccctccagGAGATCATATTCTACAAAATTACTGACTACATTTTGCCATGGCAAAGAAGAACTCAATGTGATTCCgtatgtggtcacttggagcaggtttacctttctatgtcccaatgatataa Alignment from Exonerate_coding2genome GAAATCATCTTCTATAAAATCATCGATTACATTTTA-CATGGAAAAGAAGAGATCAACGTGATTCC ataccttctatgctatttagtattgcctcccacctgcccctcccctccagGAGATCATATTCTACAAAATTACTGACTACATTTTGCCATGGCAAAGAAGAACTCAATGTGATTCCgtatgtggtcacttggagcaggtttacctttctatgtcccaatgatataa Alignment from GeneWise GAAATCATCTTCTATAAAATCATCGATTACATT-TTACATGGAAAAGAAGAGATCAACGTGATTCC ataccttctatgctatttagtattgcctcccacctgcccctcccctccagGAGATCATATTCTACAAAATTACTGACTACATTTTGCCATGGCAAAGAAGAACTCAATGTGATTCCgtatgtggtcacttggagcaggtttacctttctatgtcccaatgatataa #### Pde6c_ID7543_13 --> 0 - 0 Original Alignment GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCAC-GGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tagtgttgtgtgtcatctcaaggaatgaatcctgtttttcaaattcacagATTCTTACAAAGTGGATGTACACAGTCCGAAAGGGGTACCGACCTGCTACCTACCATAACTGGCGGCATCGGATCGAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtatgcttagaagttgttataggctgaatgttactctcctacaaagtgac Alignment from CESAR GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCAC-GGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tagtgttgtgtgtcatctcaaggaatgaatcctgtttttcaaattcacagATTCTTACAAAGTGGATGTACACAGTCCGAAAGGGGTACCGACCTGCTACCTACCATAACTGGCGGCATCGGATCGAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtatgcttagaagttgttataggctgaatgttactctcctacaaagtgac Alignment from Spaln_aa2Genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCAC-GGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tagtgttgtgtgtcatctcaaggaatgaatcctgtttttcaaattcacagATTCTTACAAAGTGGATGTACACAGTCCGAAAGGGGTACCGACCTGCTACCTACCATAACTGGCGGCATcGGATCGAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtatgcttagaagttgttataggctgaatgttactctcctacaaagtgac Alignment from Spaln_nt2Genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCA-CGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tagtgttgtgtgtcatctcaaggaatgaatcctgtttttcaaattcacagATTCTTACAAAGTGGATGTACACAGTCCGAAAGGGGTACCGACCTGCTACCTACCATAACTGGCGGCATCGGATCGAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtatgcttagaagttgttataggctgaatgttactctcctacaaagtgac Alignment from Pairagon GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCA-CGGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tagtgttgtgtgtcatctcaaggaatgaatcctgtttttcaaattcacagATTCTTACAAAGTGGATGTACACAGTCCGAAAGGGGTACCGACCTGCTACCTACCATAACTGGCGGCATCGGATCGAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtatgcttagaagttgttataggctgaatgttactctcctacaaagtgac Alignment from Exonerate_protein2genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCAC-GGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tagtgttgtgtgtcatctcaaggaatgaatcctgtttttcaaattcacagATTCTTACAAAGTGGATGTACACAGTCCGAAAGGGGTACCGACCTGCTACCTACCATAACTGGCGGCATCGGATCGAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtatgcttagaagttgttataggctgaatgttactctcctacaaagtgac Alignment from Exonerate_coding2genome GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCAC-GGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tagtgttgtgtgtcatctcaaggaatgaatcctgtttttcaaattcacagATTCTTACAAAGTGGATGTACACAGTCCGAAAGGGGTACCGACCTGCTACCTACCATAACTGGCGGCATCGGATCGAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtatgcttagaagttgttataggctgaatgttactctcctacaaagtgac Alignment from GeneWise GTTCTTACAAGGTGGATGTACACAGTCCGGAAAGGGTACCGTCCTGTCACCTACCACAACTGGCGGCAC-GGATTCAACGTGGGGCAGACCATGTTCACTTTGTTAATG tagtgttgtgtgtcatctcaaggaatgaatcctgtttttcaaattcacagATTCTTACAAAGTGGATGTACACAGTCCGAAAGGGGTACCGACCTGCTACCTACCATAACTGGCGGCATCGGATCGAATGTGGGGCATACTATGTCCCCTTTGTTAATGgtatgcttagaagttgttataggctgaatgttactctcctacaaagtgac #### Peo1_ID9266_3 --> 1 - 2 Original Alignment gTCCGTCATAGACACAATG-CAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACag ttcttcaattgagtcccaatagtacgagcttgttgttattcttcctacaggTCTGTCATAGACACAATGCCAACATGCAGTATATGTCTATGACATCTGTCATGTAGTCATTGACAACTTGCAATTCATGATGGGTCATGAGCAGCTTTCCTCGGACaggtaagctgatgaattcatgggtctgactgacagatgttggctcactttaa Alignment from CESAR gTCCGTCATAGACACAATG-CAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACag ttcttcaattgagtcccaatagtacgagcttgttgttattcttcctacaggTCTGTCATAGACACAATGCCAACATGCAGTATATGTCTATGACATCTGTCATGTAGTCATTGACAACTTGCAATTCATGATGGGTCATGAGCAGCTTTCCTCGGACaggtaagctgatgaattcatgggtctgactgacagatgttggctcactttaa Alignment from Spaln_aa2Genome GTCCGTCATAGACACAATG-CAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG ttcttcaattgagtcccaatagtacgagcttgttgttattcttcctacagGTCTGTCATAGACACAATGcCAACATGCAGTATATGTCTATGACATCTGTCATGTAGTCATTGACAACTTGCAATTCATGATGGGTCATGAGCAGCTTTCCTCGGACAGgtaagctgatgaattcatgggtctgactgacagatgttggctcactttaa Alignment from Spaln_nt2Genome GTCCGTCATAGACACAATG-CAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG ttcttcaattgagtcccaatagtacgagcttgttgttattcttcctacagGTCTGTCATAGACACAATGCCAACATGCAGTATATGTCTATGACATCTGTCATGTAGTCATTGACAACTTGCAATTCATGATGGGTCATGAGCAGCTTTCCTCGGACAGgtaagctgatgaattcatgggtctgactgacagatgttggctcactttaa Alignment from Pairagon GTCCGTCATAGACACAATG-CAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG ttcttcaattgagtcccaatagtacgagcttgttgttattcttcctacagGTCTGTCATAGACACAATGCCAACATGCAGTATATGTCTATGACATCTGTCATGTAGTCATTGACAACTTGCAATTCATGATGGGTCATGAGCAGCTTTCCTCGGACAGgtaagctgatgaattcatgggtctgactgacagatgttggctcactttaa Alignment from Exonerate_protein2genome GTCCGTCATAGACACAATG-CAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG ttcttcaattgagtcccaatagtacgagcttgttgttattcttcctacagGTCTGTCATAGACACAATGCCAACATGCAGTATATGTCTATGACATCTGTCATGTAGTCATTGACAACTTGCAATTCATGATGGGTCATGAGCAGCTTTCCTCGGACAGgtaagctgatgaattcatgggtctgactgacagatgttggctcactttaa Alignment from Exonerate_coding2genome GTCCGTCATAGACACAATG-CAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG ttcttcaattgagtcccaatagtacgagcttgttgttattcttcctacagGTCTGTCATAGACACAATGCCAACATGCAGTATATGTCTATGACATCTGTCATGTAGTCATTGACAACTTGCAATTCATGATGGGTCATGAGCAGCTTTCCTCGGACAGgtaagctgatgaattcatgggtctgactgacagatgttggctcactttaa Alignment from GeneWise GTCCGTCATAGACACAATG-CAACATGCTGTCTACGTCTATGACGTCTGTCATGTAGTCATTGACAACTTGCAGTTCATGATGGGTCACGAGCAGCTCTCCTCTGACAG ttcttcaattgagtcccaatagtacgagcttgttgttattcttcctacagGTCTGTCATAGACACAATGCCAACATGCAGTATATGTCTATGACATCTGTCATGTAGTCATTGACAACTTGCAATTCATGATGGGTCATGAGCAGCTTTCCTCGGACAGgtaagctgatgaattcatgggtctgactgacagatgttggctcactttaa #### Pitpnm1_ID306_3 --> 1 - 1 Original Alignment gTACACCTGCCCCTTTGTGGAGAAGTTC-TCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGg gttaaaatacataaacttgagacctgaagtgttctgtgttttaattgtaggTACACCTGCCCCTTTGTTGAGAAGTTCCTCGATTGAAATAGAGACCTACTACTTGCCGGATGGGGGTCAGCAACCTAATGTCTTCAAC---AGTGGGGCTGAGAGAAGACAGCGAATCGTTggtaattccttctgggtcactatgtctcagcactaagtgaacccagatctt Alignment from CESAR gTACACCTGCCCCTTTGTGGAGAAGTTC-TCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGg gttaaaatacataaacttgagacctgaagtgttctgtgttttaattgtaggTACACCTGCCCCTTTGTTGAGAAGTTCCTCGATTGAAATAGAGACCTACTACTTGCCGGATGGGGGTCAGCAACCTAATGTCTTCAAC---AGTGGGGCTGAGAGAAGACAGCGAATCGTTggtaattccttctgggtcactatgtctcagcactaagtgaacccagatctt Alignment from Spaln_aa2Genome GTACACCTGCCCCTTTGTGGAGAAGTTC-TCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG gttaaaatacataaacttgagacctgaagtgttctgtgttttaattgtagGTACACCTGCCCCTTTGTTGAGAAGTTCcTCGATTGAAATAGAGACCTACTACTTGCCGGATGGGGGTCAGCAACCTAATGTCTTCAAC---AGTGGGGCTGAGAGAAGACAGCGAATCGTTGgtaattccttctgggtcactatgtctcagcactaagtgaacccagatctt Alignment from Spaln_nt2Genome GTACACCTGCCCCTTTGTGGAGAAGTT-CTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG gttaaaatacataaacttgagacctgaagtgttctgtgttttaattgtagGTACACCTGCCCCTTTGTTGAGAAGTTCCTCGATTGAAATAGAGACCTACTACTTGCCGGATGGGGGTCAGCAACCTAATGTCTTCAAC---AGTGGGGCTGAGAGAAGACAGCGAATCGTTGgtaattccttctgggtcactatgtctcagcactaagtgaacccagatctt Alignment from Pairagon GTACACCTGCCCCTTTGTGGAGAAGTT-CTCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG gttaaaatacataaacttgagacctgaagtgttctgtgttttaattgtagGTACACCTGCCCCTTTGTTGAGAAGTTCCTCGATTGAAATAGAGACCTACTACTTGCCGGATGGGGGTCAGCAACCTAATGTCTTCAAC---AGTGGGGCTGAGAGAAGACAGCGAATCGTTGgtaattccttctgggtcactatgtctcagcactaagtgaacccagatctt Alignment from Exonerate_protein2genome GTACACCTGCCCCTTTGTGGAGAAGTTC-TCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG gttaaaatacataaacttgagacctgaagtgttctgtgttttaattgtagGTACACCTGCCCCTTTGTTGAGAAGTTCCTCGATTGAAATAGAGACCTACTACTTGCCGGATGGGGGTCAGCAACCTAATGTCTTCAAC---AGTGGGGCTGAGAGAAGACAGCGAATCGTTGgtaattccttctgggtcactatgtctcagcactaagtgaacccagatctt Alignment from Exonerate_coding2genome GTACACCTGCCCCTTTGTGGAGAAGTTC-TCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG gttaaaatacataaacttgagacctgaagtgttctgtgttttaattgtagGTACACCTGCCCCTTTGTTGAGAAGTTCCTCGATTGAAATAGAGACCTACTACTTGCCGGATGGGGGTCAGCAACCTAATGTCTTCAAC---AGTGGGGCTGAGAGAAGACAGCGAATCGTTGgtaattccttctgggtcactatgtctcagcactaagtgaacccagatctt Alignment from GeneWise GTACACCTGCCCCTTTGTGGAGAAGTTC-TCCATTGAGATAGAGACCTACTACTTGCCTGATGGGGGGCAGCAACCTAACGTCTTCAACCTGAGTGGGGCTGAGAGAAGACAGAGAATCGTGG gttaaaatacataaacttgagacctgaagtgttctgtgttttaattgtagGTACACCTGCCCCTTTGTTGAGAAGTTCCTCGATTGAAATAGAGACCTACTACTTGCCGGATGGGGGTCAGCAACCTAATGTCTTCAAC---AGTGGGGCTGAGAGAAGACAGCGAATCGTTGgtaattccttctgggtcactatgtctcagcactaagtgaacccagatctt #### Pitpnm1_ID313_10 --> 1 - 0 Original Alignment cCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGC-ACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG ggagtgttagacctgatatgttttacctgagaaatgtatgtgtgttttagtCTGAGTCCTTACAGCCATGATGGGGACCGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCCACCTTATCCTCTCAATACCAGGGTGCAGTGGCCACTGTCATTGCTCACCACCAACCAGGCCTTTGCAGCCTTCCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcccaaaagttagtcaatacctatgctgcagc Alignment from CESAR cCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGC-ACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG ggagtgttagacctgatatgttttacctgagaaatgtatgtgtgttttagtCTGAGTCCTTACAGCCATGATGGGGACCGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCCACCTTATCCTCTCAATACCAGGGTGCAGTGGCCACTGTCATTGCTCACCACCAACCAGGCCTTTGCAGCCTTCCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcccaaaagttagtcaatacctatgctgcagc Alignment from Spaln_aa2Genome CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGC-ACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG ggagtgttagacctgatatgttttacctgagaaatgtatgtgtgttttagTCTGAGTCCTTACAGCCATGATGGGGACCGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCCACCTTATCCTCTCAATACCAGGGTGCAGTGGCCACTGTCATTGCTCACcACCAACCAGGCCTTTGCAGCCTTCCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcccaaaagttagtcaatacctatgctgcagc Alignment from Spaln_nt2Genome CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGC-ACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG ggagtgttagacctgatatgttttacctgagaaatgtatgtgtgttttagTCTGAGTCCTTACAGCCATGATGGGGACCGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCCACCTTATCCTCTCAATACCAGGGTGCAGTGGCCACTGTCATTGCTCACCACCAACCAGGCCTTTGCAGCCTTCCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcccaaaagttagtcaatacctatgctgcagc Alignment from Pairagon CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCG-CACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG ggagtgttagacctgatatgttttacctgagaaatgtatgtgtgttttagTCTGAGTCCTTACAGCCATGATGGGGACCGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCCACCTTATCCTCTCAATACCAGGGTGCAGTGGCCACTGTCATTGCTCACCACCAACCAGGCCTTTGCAGCCTTCCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcccaaaagttagtcaatacctatgctgcagc Alignment from Exonerate_protein2genome CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGC-ACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG ggagtgttagacctgatatgttttacctgagaaatgtatgtgtgttttagTCTGAGTCCTTACAGCCATGATGGGGACCGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCCACCTTATCCTCTCAATACCAGGGTGCAGTGGCCACTGTCATTGCTCACCACCAACCAGGCCTTTGCAGCCTTCCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcccaaaagttagtcaatacctatgctgcagc Alignment from Exonerate_coding2genome CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGC-ACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG ggagtgttagacctgatatgttttacctgagaaatgtatgtgtgttttagTCTGAGTCCTTACAGCCATGATGGGGACCGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCCACCTTATCCTCTCAATACCAGGGTGCAGTGGCCACTGTCATTGCTCACCACCAACCAGGCCTTTGCAGCCTTCCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcccaaaagttagtcaatacctatgctgcagc Alignment from GeneWise CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCT-CGCACCAACCAGGCCTATGCAGCCTTCCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG ggagtgttagacctgatatgttttacctgagaaatgtatgtgtgttttagTCTGAGTCCTTACAGCCATGATGGGGACCGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTCCTGGCCACCTTATCCTCTCAATACCAGGGTGCAGTGGCCACTGTCATTGCTCACCACCAACCAGGCCTTTGCAGCCTTCCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcccaaaagttagtcaatacctatgctgcagc #### Pitpnm1_ID319_16 --> 2 - 0 Original Alignment tcCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAA-TCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gtggaagactgcagtctgctttggactcttattacacctttttttttcagtcCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACTCTACTGCCCAGAAGCACTTACAGCCTTCCCCACAGTCACACTGCCCCACCTCTTTCATGCAAGCTACTGGGAGCTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgtacaggaacccagggtgtggcccaacactgagacaacaaggactattgc Alignment from CESAR tcCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAA-TCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gtggaagactgcagtctgctttggactcttattacacctttttttttcagtcCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACTCTACTGCCCAGAAGCACTTACAGCCTTCCCCACAGTCACACTGCCCCACCTCTTTCATGCAAGCTACTGGGAGCTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgtacaggaacccagggtgtggcccaacactgagacaacaaggactattgc Alignment from Spaln_aa2Genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAA-TCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gtggaagactgcagtctgctttggactcttattacacctttttttttcagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACTCTACTGCCCAGAAGCACTTACAGCCTTCCCCACAGTCACACTGCCCCACCTCTTTCATGCAAGCTACTGGGAGcTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgtacaggaacccagggtgtggcccaacactgagacaacaaggactattgc Alignment from Spaln_nt2Genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAA-TCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gtggaagactgcagtctgctttggactcttattacacctttttttttcagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACTCTACTGCCCAGAAGCACTTACAGCCTTCCCCACAGTCACACTGCCCCACCTCTTTCATGCAAGCTACTGGGAGCTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgtacaggaacccagggtgtggcccaacactgagacaacaaggactattgc Alignment from Pairagon TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAA-TCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gtggaagactgcagtctgctttggactcttattacacctttttttttcagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACTCTACTGCCCAGAAGCACTTACAGCCTTCCCCACAGTCACACTGCCCCACCTCTTTCATGCAAGCTACTGGGAGCTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgtacaggaacccagggtgtggcccaacactgagacaacaaggactattgc Alignment from Exonerate_protein2genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAA-TCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gtggaagactgcagtctgctttggactcttattacacctttttttttcagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACTCTACTGCCCAGAAGCACTTACAGCCTTCCCCACAGTCACACTGCCCCACCTCTTTCATGCAAGCTACTGGGAGCTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgtacaggaacccagggtgtggcccaacactgagacaacaaggactattgc Alignment from Exonerate_coding2genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAA-TCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gtggaagactgcagtctgctttggactcttattacacctttttttttcagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACTCTACTGCCCAGAAGCACTTACAGCCTTCCCCACAGTCACACTGCCCCACCTCTTTCATGCAAGCTACTGGGAGCTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgtacaggaacccagggtgtggcccaacactgagacaacaaggactattgc Alignment from GeneWise TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGCTACTGGGAA-TCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gtggaagactgcagtctgctttggactcttattacacctttttttttcagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACTCTACTGCCCAGAAGCACTTACAGCCTTCCCCACAGTCACACTGCCCCACCTCTTTCATGCAAGCTACTGGGAGCTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgtacaggaacccagggtgtggcccaacactgagacaacaaggactattgc #### Pitpnm1_ID320_17 --> 0 - 0 Original Alignment GTCATTGAGAAGGAGCGGCCACAG-CTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG gagggtcacatataggtggaccttgtctctgtgccctggctttcccacagATCATTGAAAAGGAGTGGCCACAACTTGACTGAGTGTCAGGAGCCATCCATCTACAGCCCTGCCTTCCCTAGGGAGAAATGGCAGTGCAAGCGAACACAGGTCAAAATCCGGgtaagagtcttactgtcgtgtactagctaaagtgtgtcccttgtatgctt Alignment from CESAR GTCATTGAGAAGGAGCGGCCACAG-CTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG gagggtcacatataggtggaccttgtctctgtgccctggctttcccacagATCATTGAAAAGGAGTGGCCACAACTTGACTGAGTGTCAGGAGCCATCCATCTACAGCCCTGCCTTCCCTAGGGAGAAATGGCAGTGCAAGCGAACACAGGTCAAAATCCGGgtaagagtcttactgtcgtgtactagctaaagtgtgtcccttgtatgctt Alignment from Spaln_aa2Genome GTCATTGAGAAGGAGCGGCCACAG-CTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG gagggtcacatataggtggaccttgtctctgtgccctggctttcccacagATCATTGAAAAGGAGTGGCCACAAcTTGACTGAGTGTCAGGAGCCATCCATCTACAGCCCTGCCTTCCCTAGGGAGAAATGGCAGTGCAAGCGAACACAGGTCAAAATCCGGgtaagagtcttactgtcgtgtactagctaaagtgtgtcccttgtatgctt Alignment from Spaln_nt2Genome GTCATTGAGAAGGAGCGGCCACAGCT-GACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG gagggtcacatataggtggaccttgtctctgtgccctggctttcccacagATCATTGAAAAGGAGTGGCCACAACTTGACTGAGTGTCAGGAGCCATCCATCTACAGCCCTGCCTTCCCTAGGGAGAAATGGCAGTGCAAGCGAACACAGGTCAAAATCCGGgtaagagtcttactgtcgtgtactagctaaagtgtgtcccttgtatgctt Alignment from Pairagon GTCATTGAGAAGGAGCGGCCACAGC-TGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG gagggtcacatataggtggaccttgtctctgtgccctggctttcccacagATCATTGAAAAGGAGTGGCCACAACTTGACTGAGTGTCAGGAGCCATCCATCTACAGCCCTGCCTTCCCTAGGGAGAAATGGCAGTGCAAGCGAACACAGGTCAAAATCCGGgtaagagtcttactgtcgtgtactagctaaagtgtgtcccttgtatgctt Alignment from Exonerate_protein2genome GTCATTGAGAAGGAGCGGCCACAG-CTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG gagggtcacatataggtggaccttgtctctgtgccctggctttcccacagATCATTGAAAAGGAGTGGCCACAACTTGACTGAGTGTCAGGAGCCATCCATCTACAGCCCTGCCTTCCCTAGGGAGAAATGGCAGTGCAAGCGAACACAGGTCAAAATCCGGgtaagagtcttactgtcgtgtactagctaaagtgtgtcccttgtatgctt Alignment from Exonerate_coding2genome GTCATTGAGAAGGAGCGGCCACAG-CTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG gagggtcacatataggtggaccttgtctctgtgccctggctttcccacagATCATTGAAAAGGAGTGGCCACAACTTGACTGAGTGTCAGGAGCCATCCATCTACAGCCCTGCCTTCCCTAGGGAGAAATGGCAGTGCAAGCGAACACAGGTCAAAATCCGGgtaagagtcttactgtcgtgtactagctaaagtgtgtcccttgtatgctt Alignment from GeneWise -CGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG gagggtcacatataggtggaccttgtctctgtgccctggctttcccacagatcattgaaaaggagTGGCCACAACTTGACTGAGTGTCAGGAGCCATCCATCTACAGCCCTGCCTTCCCTAGGGAGAAATGGCAGTGCAAGCGAACACAGGTCAAAATCCGGgtaagagtcttactgtcgtgtactagctaaagtgtgtcccttgtatgctt #### Pitpnm1_ID323_20 --> 1 - 2 Original Alignment gGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTC-TCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCag gctcctgtgaaacaccaacttactttgttaaattttcccactcttctcaggGGTGACCACACGTATGCTGAGTGCTGCTTAACCATTGTGTCCAGAGGTGCAGAAGCTGTGGTTTTCAGCATTGATGGTTCTTTCACTGCGAGTGTCCTCAATCATGGGCAGTGACCCCAAGGTACGAGCTGGAGCAGTAGATGTGGTGaggtgaggcctgcctgcaggaccatatatcaacctgccatttgtgtggacta Alignment from CESAR gGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTC-TCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCag gctcctgtgaaacaccaacttactttgttaaattttcccactcttctcaggGGTGACCACACGTATGCTGAGTGCTGCTTAACCATTGTGTCCAGAGGTGCAGAAGCTGTGGTTTTCAGCATTGATGGTTCTTTCACTGCGAGTGTCCTCAATCATGGGCAGTGACCCCAAGGTACGAGCTGGAGCAGTAGATGTGGTGaggtgaggcctgcctgcaggaccatatatcaacctgccatttgtgtggacta Alignment from Spaln_aa2Genome GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTC-TCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gctcctgtgaaacaccaacttactttgttaaattttcccactcttctcagGGGTGACCACACGTATGCTGAGTGCTGCTTAACCATTGTGTCCAGAGGTGCAGAAGCTGTGGTTTTCAGCATTGATGGTTCTTTCACTGCGAGTGTCcTCAATCATGGGCAGTGACCCCAAGGTACGAGCTGGAGCAGTAGATGTGGTGAGgtgaggcctgcctgcaggaccatatatcaacctgccatttgtgtggacta Alignment from Spaln_nt2Genome GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGT-CTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gctcctgtgaaacaccaacttactttgttaaattttcccactcttctcagGGGTGACCACACGTATGCTGAGTGCTGCTTAACCATTGTGTCCAGAGGTGCAGAAGCTGTGGTTTTCAGCATTGATGGTTCTTTCACTGCGAGTGTCCTCAATCATGGGCAGTGACCCCAAGGTACGAGCTGGAGCAGTAGATGTGGTGAGgtgaggcctgcctgcaggaccatatatcaacctgccatttgtgtggacta Alignment from Pairagon GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGT-CTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gctcctgtgaaacaccaacttactttgttaaattttcccactcttctcagGGGTGACCACACGTATGCTGAGTGCTGCTTAACCATTGTGTCCAGAGGTGCAGAAGCTGTGGTTTTCAGCATTGATGGTTCTTTCACTGCGAGTGTCCTCAATCATGGGCAGTGACCCCAAGGTACGAGCTGGAGCAGTAGATGTGGTGAGgtgaggcctgcctgcaggaccatatatcaacctgccatttgtgtggacta Alignment from Exonerate_protein2genome gctcctgtgaaacaccaacttactttgttaaattttcccactcttctcaggggtgaccacacgtatgctgagtgctgcttaaccattgtgtccagaggtgcagaagctgtggttttcagcattgatggttctttcactgcgagtgtcctcaatcatgggcagtgaccccaaggtacgagctggagcagtagatgtggtgaggtgaggcctgcctgcaggaccatatatcaacctgccatttgtgtggacta Alignment from Exonerate_coding2genome gctcctgtgaaacaccaacttactttgttaaattttcccactcttctcaggggtgaccacacgtatgctgagtgctgcttaaccattgtgtccagaggtgcagaagctgtggttttcagcattgatggttctttcactgcgagtgtcctcaatcatgggcagtgaccccaaggtacgagctggagcagtagatgtggtgaggtgaggcctgcctgcaggaccatatatcaacctgccatttgtgtggacta Alignment from GeneWise GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTC-TCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gctcctgtgaaacaccaacttactttgttaaattttcccactcttctcagGGGTGACCACACGTATGCTGAGTGCTGCTTAACCATTGTGTCCAGAGGTGCAGAAGCTGTGGTTTTCAGCATTGATGGTTCTTTCACTGCGAGTGTCCTCAATCATGGGCAGTGACCCCAAGGTACGAGCTGGAGCAGTAGATGTGGTGAGgtgaggcctgcctgcaggaccatatatcaacctgccatttgtgtggacta #### Pitpnm1_ID325_22 --> 0 - 0 Original Alignment GTAGAACTGAACATCGTGGCTGGATATGGGTCACCA-AAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttgggtaaatggctctgttagcctcctttccaacctccagGTTGATCTGAACATCATAGCTGGATATGGGTCCCCACAAAGATGTAGCAGTTTATGCAGCATTAGGACTCTCTCCAAGCCATACCTATATTATTGGCCGTGGCATCCGTACATTGCAGGCCCAGTGCCAGgtaagctttaaggaagagcagctaacgcagtccacagtcaagtgtaaaca Alignment from CESAR GTAGAACTGAACATCGTGGCTGGATATGGGTCACCA-AAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttgggtaaatggctctgttagcctcctttccaacctccagGTTGATCTGAACATCATAGCTGGATATGGGTCCCCACAAAGATGTAGCAGTTTATGCAGCATTAGGACTCTCTCCAAGCCATACCTATATTATTGGCCGTGGCATCCGTACATTGCAGGCCCAGTGCCAGgtaagctttaaggaagagcagctaacgcagtccacagtcaagtgtaaaca Alignment from Spaln_aa2Genome GTAGAACTGAACATCGTGGCTGGATATGGGTCACCA-AAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttgggtaaatggctctgttagcctcctttccaacctccagGTTGATCTGAACATCATAGCTGGATATGGGTCCCCAcAAAGATGTAGCAGTTTATGCAGCATTAGGACTCTCTCCAAGCCATACCTATATTATTGGCCGTGGCATCCGTACATTGCAGGCCCAGTGCCAGgtaagctttaaggaagagcagctaacgcagtccacagtcaagtgtaaaca Alignment from Spaln_nt2Genome GTAGAACTGAACATCGTGGCTGGATATGGGTCACCA-AAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttgggtaaatggctctgttagcctcctttccaacctccagGTTGATCTGAACATCATAGCTGGATATGGGTCCCCACAAAGATGTAGCAGTTTATGCAGCATTAGGACTCTCTCCAAGCCATACCTATATTATTGGCCGTGGCATCCGTACATTGCAGGCCCAGTGCCAGgtaagctttaaggaagagcagctaacgcagtccacagtcaagtgtaaaca Alignment from Pairagon GTAGAACTGAACATCGTGGCTGGATATGGGTCACCA-AAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttgggtaaatggctctgttagcctcctttccaacctccagGTTGATCTGAACATCATAGCTGGATATGGGTCCCCACAAAGATGTAGCAGTTTATGCAGCATTAGGACTCTCTCCAAGCCATACCTATATTATTGGCCGTGGCATCCGTACATTGCAGGCCCAGTGCCAGgtaagctttaaggaagagcagctaacgcagtccacagtcaagtgtaaaca Alignment from Exonerate_protein2genome tgtgacatccttgggtaaatggctctgttagcctcctttccaacctccaggttgatctgaacatcatagctggatatgggtccccacaaagatgtagcagtttatgcagcattaggactctctccaagccatacctatattattggccgtggcatccgtacattgcaggcccagtgccaggtaagctttaaggaagagcagctaacgcagtccacagtcaagtgtaaaca Alignment from Exonerate_coding2genome tgtgacatccttgggtaaatggctctgttagcctcctttccaacctccaggttgatctgaacatcatagctggatatgggtccccacaaagatgtagcagtttatgcagcattaggactctctccaagccatacctatattattggccgtggcatccgtacattgcaggcccagtgccaggtaagctttaaggaagagcagctaacgcagtccacagtcaagtgtaaaca Alignment from GeneWise GTAGAACTGAACATCGTGGCTGGATATGGGTCACCA-AAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttgggtaaatggctctgttagcctcctttccaacctccagGTTGATCTGAACATCATAGCTGGATATGGGTCCCCACAAAGATGTAGCAGTTTATGCAGCATTAGGACTCTCTCCAAGCCATACCTATATTATTGGCCGTGGCATCCGTACATTGCAGGCCCAGTGCCAGgtaagctttaaggaagagcagctaacgcagtccacagtcaagtgtaaaca #### Pkd2l1_ID8954_14 --> 1 - 0 Original Alignment gCTCACAAGGAGA-GTTCTGCAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG tatccagacagcaatcttggtttccttgtgatgacttgaatctcttacaggCTTACAAGGAGACGTATTGCAGCTGCAATGTATTTTGGAAGGAGTTGTTTCCCAGATTGATGCTGTTGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTACCCGGGCATGgtaagggccctctggtggcacacagagtcagctactactggacatcatat Alignment from CESAR gCTCACAAGGAGA-GTTCTGCAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG tatccagacagcaatcttggtttccttgtgatgacttgaatctcttacaggCTTACAAGGAGACGTATTGCAGCTGCAATGTATTTTGGAAGGAGTTGTTTCCCAGATTGATGCTGTTGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTACCCGGGCATGgtaagggccctctggtggcacacagagtcagctactactggacatcatat Alignment from Spaln_aa2Genome GCTCACAAGGAGA-GTTCTGCAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG tatccagacagcaatcttggtttccttgtgatgacttgaatctcttacagGCTTACAAGGAGAcGTATTGCAGCTGCAATGTATTTTGGAAGGAGTTGTTTCCCAGATTGATGCTGTTGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTACCCGGGCATGgtaagggccctctggtggcacacagagtcagctactactggacatcatat Alignment from Spaln_nt2Genome GCTCACAAGGAGA-GTTCTGCAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG tatccagacagcaatcttggtttccttgtgatgacttgaatctcttacagGCTTACAAGGAGACGTATTGCAGCTGCAATGTATTTTGGAAGGAGTTGTTTCCCAGATTGATGCTGTTGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTACCCGGGCATGgtaagggccctctggtggcacacagagtcagctactactggacatcatat Alignment from Pairagon GCTCACAAGGAGA-GTTCTGCAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG tatccagacagcaatcttggtttccttgtgatgacttgaatctcttacagGCTTACAAGGAGACGTATTGCAGCTGCAATGTATTTTGGAAGGAGTTGTTTCCCAGATTGATGCTGTTGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTACCCGGGCATGgtaagggccctctggtggcacacagagtcagctactactggacatcatat Alignment from Exonerate_protein2genome GCTCACAAGGAGA-GTTCTGCAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG tatccagacagcaatcttggtttccttgtgatgacttgaatctcttacagGCTTACAAGGAGACGTATTGCAGCTGCAATGTATTTTGGAAGGAGTTGTTTCCCAGATTGATGCTGTTGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTACCCGGGCATGgtaagggccctctggtggcacacagagtcagctactactggacatcatat Alignment from Exonerate_coding2genome GCTCACAAGGAGA-GTTCTGCAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG tatccagacagcaatcttggtttccttgtgatgacttgaatctcttacagGCTTACAAGGAGACGTATTGCAGCTGCAATGTATTTTGGAAGGAGTTGTTTCCCAGATTGATGCTGTTGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTACCCGGGCATGgtaagggccctctggtggcacacagagtcagctactactggacatcatat Alignment from GeneWise GCTCACAAGGAGA-GTTCTGCAGCTGCAGTGTGTTCTGGAAGGAGTTGTGTCCCAGATTGATGCTGTAGGCTCAAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTCCCCAGGAATG tatccagacagcaatcttggtttccttgtgatgacttgaatctcttacagGCTTACAAGGAGACGTATTGCAGCTGCAATGTATTTTGGAAGGAGTTGTTTCCCAGATTGATGCTGTTGGCTCTAAGCTGAAGATGCTGGAGAGGAAAGGGGAGCTGGCTCCCTACCCGGGCATGgtaagggccctctggtggcacacagagtcagctactactggacatcatat #### Pkd2l1_ID8955_13 --> 0 - 2 Original Alignment GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCT-GTTGGACACAGCCCCCCAGGCGAATTGGGCGCGGAGGCTGCCAGAGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACat tcactccccggactcaggttctcctgggactttctcatttgatactccagGCGACCCTCAATGTTGAGATTGAGAACCTAGGTCAGTCTCGTTGGACATAGCCCTCCTGGTGAACTG------GAGGCTGCAAGGGGAAAAAGCTGGGTTTCAGGAGAAGGATTCGACatgtgagttgagggtagtataagtggtggctgactagggcaccttgtgatgg Alignment from CESAR GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCT-GTTGGACACAGCCCCCCAGGCGAATTGGGCGCGGAGGCTGCCAGAGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACat tcactccccggactcaggttctcctgggactttctcatttgatactccagGCGACCCTCAATGTTGAGATTGAGAACCTAGGTCAGTCTCGTTGGACATAGCCCTCCTGGTGAACTG------GAGGCTGCAAGGGGAAAAAGCTGGGTTTCAGGAGAAGGATTCGACatgtgagttgagggtagtataagtggtggctgactagggcaccttgtgatgg Alignment from Spaln_aa2Genome GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCT-GTTGGACACAGCCCCCCAGGCGAATTGGGCGCGGAGGCTGCCAGAGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACAT tcactccccggactcaggttctcctgggactttctcatttgatactccagGCGACCCTCAATGTTGAGATTGAGAACCTAGGTCAGTCTcGTTGGACATAGCCCTCCTGGTGAACTGGAG------GCTGCAAGGGGAAAAAGCTGGGTTTCAGGAGAAGGATTCGACATgtgagttgagggtagtataagtggtggctgactagggcaccttgtgatgg Alignment from Spaln_nt2Genome GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCT-GTTGGACACAGCCCCCCAGGCGAATTGGGCGCGGAGGCTGCCAGAGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACAT tcactccccggactcaggttctcctgggactttctcatttgatactccagGCGACCCTCAATGTTGAGATTGAGAACCTAGGTCAGTCTCGTTGGACATAGCCCTCCTGGTGAACT------GGAGGCTGCAAGGGGAAAAAGCTGGGTTTCAGGAGAAGGATTCGACATgtgagttgagggtagtataagtggtggctgactagggcaccttgtgatgg Alignment from Pairagon GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCT-GTTGGACACAGCCCCCCAGGCGAATTGGGCGCGGAGGCTGCCAGAGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACAT tcactccccggactcaggttctcctgggactttctcatttgatactccagGCGACCCTCAATGTTGAGATTGAGAACCTAGGTCAGTCTCGTTGGACATAGCCCTCCTGGTGAACT------GGAGGCTGCAAGGGGAAAAAGCTGGGTTTCAGGAGAAGGATTCGACATgtgagttgagggtagtataagtggtggctgactagggcaccttgtgatgg Alignment from Exonerate_protein2genome GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCT-GTTGGACACAGCCCCCCAGGCGAATTGGGCGCGGAGGCTGCCAGAGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACAT tcactccccggactcaggttctcctgggactttctcatttgatactccagGCGACCCTCAATGTTGAGATTGAGAACCTAGGTCAGTCTCGTTGGACATAGCCCTCCTGGTGAACTG------GAGGCTGCAAGGGGAAAAAGCTGGGTTTCAGGAGAAGGATTCGACATgtgagttgagggtagtataagtggtggctgactagggcaccttgtgatgg Alignment from Exonerate_coding2genome GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGGTCT-GTTGGACACAGCCCCCCAGGCGAATTGGGCGCGGAGGCTGCCAGAGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACAT tcactccccggactcaggttctcctgggactttctcatttgatactccagGCGACCCTCAATGTTGAGATTGAGAACCTAGGTCAGTCTCGTTGGACATAGCCCTCCTGGTGAACTG------GAGGCTGCAAGGGGAAAAAGCTGGGTTTCAGGAGAAGGATTCGACATgtgagttgagggtagtataagtggtggctgactagggcaccttgtgatgg Alignment from GeneWise GTGACCCTCAATGCTGAGATTGAGAACCTAGGCCGG-TCTGTTGGACACAGCCCCCCAGGCGAATTGGGCGCGGAGGCTGCCAGAGGACAAAGCTGGGTTTCTGGAGAAGAATTCGACAT tcactccccggactcaggttctcctgggactttctcatttgatactccagGCGACCCTCAATGTTGAGATTGAGAACCTAGGTCAGTCTCGTTGGACATAGCCCTCCTGGTGAACTG------GAGGCTGCAAGGGGAAAAAGCTGGGTTTCAGGAGAAGGATTCGACATgtgagttgagggtagtataagtggtggctgactagggcaccttgtgatgg #### Pkd2l1_ID8959_9 --> 1 - 0 Original Alignment tTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAAT-GCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG gagctgtactcagatacatagcaggctttctgttccctctcttctcccagtTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATCGCTAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTGgtgagtgtcacttagagggctggtggtttggaagccctttaaagtgtcct Alignment from CESAR tTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAAT-GCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG gagctgtactcagatacatagcaggctttctgttccctctcttctcccagtTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATCGCTAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTGgtgagtgtcacttagagggctggtggtttggaagccctttaaagtgtcct Alignment from Spaln_aa2Genome TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAAT-GCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG gagctgtactcagatacatagcaggctttctgttccctctcttctcccagTTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATcGCTAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTGgtgagtgtcacttagagggctggtggtttggaagccctttaaagtgtcct Alignment from Spaln_nt2Genome TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAAT-GCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG gagctgtactcagatacatagcaggctttctgttccctctcttctcccagTTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATCGCTAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTGgtgagtgtcacttagagggctggtggtttggaagccctttaaagtgtcct Alignment from Pairagon TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAAT-GCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG gagctgtactcagatacatagcaggctttctgttccctctcttctcccagTTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATCGCTAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTGgtgagtgtcacttagagggctggtggtttggaagccctttaaagtgtcct Alignment from Exonerate_protein2genome TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAAT-GCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG gagctgtactcagatacatagcaggctttctgttccctctcttctcccagTTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATCGCTAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTGgtgagtgtcacttagagggctggtggtttggaagccctttaaagtgtcct Alignment from Exonerate_coding2genome TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAAT-GCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG gagctgtactcagatacatagcaggctttctgttccctctcttctcccagTTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATCGCTAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTGgtgagtgtcacttagagggctggtggtttggaagccctttaaagtgtcct Alignment from GeneWise TTTCACTCAGTTCCGGATAATCCTTGGGGATTTTGACTACAATGCCATCGACAAT-GCCAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTG gagctgtactcagatacatagcaggctttctgttccctctcttctcccagTTTCACTCAGTTCCGTATAATCCTTGGGGATTTTGACTACAATGCCATTGACAATCGCTAACAGAATCCTGGGCCCTGTGTACTTTGTCACCTATGTCTTCTTCGTCTTCTTCGTGCTCCTGgtgagtgtcacttagagggctggtggtttggaagccctttaaagtgtcct #### Pkd2l1_ID8960_8 --> 0 - 2 Original Alignment ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAA-AACTTTAGCACTTTCGTCAAGTGCat tctccctggaggagcctaccccttgactttgactcgctttttggccacagATATTTAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACTCAAGTGGAACAACTTTAGCACTTTTGTTAAGTGCatgtgagaatagctgtatcattgtagatcactcaattttcagatcccagcat Alignment from CESAR ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAA-AACTTTAGCACTTTCGTCAAGTGCat tctccctggaggagcctaccccttgactttgactcgctttttggccacagATATTTAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACTCAAGTGGAACAACTTTAGCACTTTTGTTAAGTGCatgtgagaatagctgtatcattgtagatcactcaattttcagatcccagcat Alignment from Spaln_aa2Genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAA-AACTTTAGCACTTTCGTCAAGTGCAT tctccctggaggagcctaccccttgactttgactcgctttttggccacagATATTTAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACTCAAGTGGAAcAACTTTAGCACTTTTGTTAAGTGCATgtgagaatagctgtatcattgtagatcactcaattttcagatcccagcat Alignment from Spaln_nt2Genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAA-AACTTTAGCACTTTCGTCAAGTGCAT tctccctggaggagcctaccccttgactttgactcgctttttggccacagATATTTAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACTCAAGTGGAACAACTTTAGCACTTTTGTTAAGTGCATgtgagaatagctgtatcattgtagatcactcaattttcagatcccagcat Alignment from Pairagon ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAA-AACTTTAGCACTTTCGTCAAGTGCAT tctccctggaggagcctaccccttgactttgactcgctttttggccacagATATTTAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACTCAAGTGGAACAACTTTAGCACTTTTGTTAAGTGCATgtgagaatagctgtatcattgtagatcactcaattttcagatcccagcat Alignment from Exonerate_protein2genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAA-AACTTTAGCACTTTCGTCAAGTGCAT tctccctggaggagcctaccccttgactttgactcgctttttggccacagATATTTAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACTCAAGTGGAACAACTTTAGCACTTTTGTTAAGTGCATgtgagaatagctgtatcattgtagatcactcaattttcagatcccagcat Alignment from Exonerate_coding2genome ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTGGAA-AACTTTAGCACTTTCGTCAAGTGCAT tctccctggaggagcctaccccttgactttgactcgctttttggccacagATATTTAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACTCAAGTGGAACAACTTTAGCACTTTTGTTAAGTGCATgtgagaatagctgtatcattgtagatcactcaattttcagatcccagcat Alignment from GeneWise ATATTCAAGTATATCAGCTTCAACAAGACCATGACACAGCTCTCCTCCACCCTGGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTACGCCCAGCTTGGCTACCTGCTTTTTGGGACCCAAGTG-GAAAACTTTAGCACTTTCGTCAAGTGCAT tctccctggaggagcctaccccttgactttgactcgctttttggccacagATATTTAAGTATATAAGTTTCAATAAGACCATGACACAGCTCTCATCCACCCTAGCTCGCTGTGCCAAGGACATCCTGGGCTTTGCCATCATGTTCTTCATTGTCTTCTTCGCTTATGCCCAGCTTGGCTACCTGCTTTTTGGGACTCAAGTGGAACAACTTTAGCACTTTTGTTAAGTGCATgtgagaatagctgtatcattgtagatcactcaattttcagatcccagcat #### Plcb3_ID1901_30 --> 0 - 0 Original Alignment CTGGAAGAGGCCCAG-AAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG tatcctaagccttgctctgccctcagccgacaatgtttttatattcacagTTGGGGGAGGCCCAGCAAACAGCAGCATGAACGGCTAGTGGCAGGACAACAGCAAGTCCTCCAGCAATTAGAGGAAGAGAAACCCAAGgtattgcctggcggagttgcatatacaggccaataggggagctggtcaac Alignment from CESAR CTGGAAGAGGCCCAG-AAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG tatcctaagccttgctctgccctcagccgacaatgtttttatattcacagTTGGGGGAGGCCCAGCAAACAGCAGCATGAACGGCTAGTGGCAGGACAACAGCAAGTCCTCCAGCAATTAGAGGAAGAGAAACCCAAGgtattgcctggcggagttgcatatacaggccaataggggagctggtcaac Alignment from Spaln_aa2Genome GGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG tatcctaagccttgctctgccctcagccgacaatgtttttatattcacagttgggggagGCCCAGCAAACAGCAGCATGAACGGCTAGTGGCAGGACAACAGCAAGTCCTCCAGCAATTAGAGGAAGAGAAACCCAAGgtattgcctggcggagttgcatatacaggccaataggggagctggtcaac Alignment from Spaln_nt2Genome CTGGAAGAGGCCCAG-AAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG tatcctaagccttgctctgccctcagccgacaatgtttttatattcacagTTGGGGGAGGCCCAGCAAACAGCAGCATGAACGGCTAGTGGCAGGACAACAGCAAGTCCTCCAGCAATTAGAGGAAGAGAAACCCAAGgtattgcctggcggagttgcatatacaggccaataggggagctggtcaac Alignment from Pairagon CTGGAAGAGGCCCAG-AAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG tatcctaagccttgctctgccctcagccgacaatgtttttatattcacagTTGGGGGAGGCCCAGCAAACAGCAGCATGAACGGCTAGTGGCAGGACAACAGCAAGTCCTCCAGCAATTAGAGGAAGAGAAACCCAAGgtattgcctggcggagttgcatatacaggccaataggggagctggtcaac Alignment from Exonerate_protein2genome CTGGAAGAGGCCCAG-AAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG tatcctaagccttgctctgccctcagccgacaatgtttttatattcacagTTGGGGGAGGCCCAGCAAACAGCAGCATGAACGGCTAGTGGCAGGACAACAGCAAGTCCTCCAGCAATTAGAGGAAGAGAAACCCAAGgtattgcctggcggagttgcatatacaggccaataggggagctggtcaac Alignment from Exonerate_coding2genome CTGGAAGAGGCCCAG-AAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG tatcctaagccttgctctgccctcagccgacaatgtttttatattcacagTTGGGGGAGGCCCAGCAAACAGCAGCATGAACGGCTAGTGGCAGGACAACAGCAAGTCCTCCAGCAATTAGAGGAAGAGAAACCCAAGgtattgcctggcggagttgcatatacaggccaataggggagctggtcaac Alignment from GeneWise GGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAGGAAGAGGAACCCAAG tatcctaagccttgctctgccctcagccgacaatgtttttatattcacagttgggggagGCCCAGCAAACAGCAGCATGAACGGCTAGTGGCAGGACAACAGCAAGTCCTCCAGCAATTAGAGGAAGAGAAACCCAAGgtattgcctggcggagttgcatatacaggccaataggggagctggtcaac #### Plcb3_ID1902_29 --> 1 - 0 Original Alignment gGAACTGACAGAGATTAATCGG-CGGCACATCACTGAGTCGGTAAACTCCATCAGACGG gtcagtgggtgcagggaaatagtttagcatgtcttctcttttcttaccaggGAATTGACAGAGATTAATCGGCCAACACATCACTGAGTCTGTAAACTCCAACAGACGGgtgagtgggtcttatctctctgtcaccaacaggagctatcctttactgtt Alignment from CESAR gGAACTGACAGAGATTAATCGG-CGGCACATCACTGAGTCGGTAAACTCCATCAGACGG gtcagtgggtgcagggaaatagtttagcatgtcttctcttttcttaccaggGAATTGACAGAGATTAATCGGCCAACACATCACTGAGTCTGTAAACTCCAACAGACGGgtgagtgggtcttatctctctgtcaccaacaggagctatcctttactgtt Alignment from Spaln_aa2Genome GGAACTGACAGAGATTAATCGG-CGGCACATCACTGAGTCGGTAAACTCCATCAGACGG gtcagtgggtgcagggaaatagtttagcatgtcttctcttttcttaccagGGAATTGACAGAGATTAATCGGcCAACACATCACTGAGTCTGTAAACTCCAACAGACGGgtgagtgggtcttatctctctgtcaccaacaggagctatcctttactgtt Alignment from Spaln_nt2Genome GGAACTGACAGAGATTAATCGGCGG-CACATCACTGAGTCGGTAAACTCCATCAGACGG gtcagtgggtgcagggaaatagtttagcatgtcttctcttttcttaccagGGAATTGACAGAGATTAATCGGCCAACACATCACTGAGTCTGTAAACTCCAACAGACGGgtgagtgggtcttatctctctgtcaccaacaggagctatcctttactgtt Alignment from Pairagon GGAACTGACAGAGATTAATCGG-CGGCACATCACTGAGTCGGTAAACTCCATCAGACGG gtcagtgggtgcagggaaatagtttagcatgtcttctcttttcttaccagGGAATTGACAGAGATTAATCGGCCAACACATCACTGAGTCTGTAAACTCCAACAGACGGgtgagtgggtcttatctctctgtcaccaacaggagctatcctttactgtt Alignment from Exonerate_protein2genome GGAACTGACAGAGATTAATCGG-CGGCACATCACTGAGTCGGTAAACTCCATCAGACGG gtcagtgggtgcagggaaatagtttagcatgtcttctcttttcttaccagGGAATTGACAGAGATTAATCGGCCAACACATCACTGAGTCTGTAAACTCCAACAGACGGgtgagtgggtcttatctctctgtcaccaacaggagctatcctttactgtt Alignment from Exonerate_coding2genome gtcagtgggtgcagggaaatagtttagcatgtcttctcttttcttaccagggaattgacagagattaatcggccaacacatcactgagtctgtaaactccaacagacgggtgagtgggtcttatctctctgtcaccaacaggagctatcctttactgtt Alignment from GeneWise GGAACTGACAGAGATTAATCGG-CGGCACATCACTGAGTCGGTAAACTCCATCAGACGG gtcagtgggtgcagggaaatagtttagcatgtcttctcttttcttaccagGGAATTGACAGAGATTAATCGGCCAACACATCACTGAGTCTGTAAACTCCAACAGACGGgtgagtgggtcttatctctctgtcaccaacaggagctatcctttactgtt #### Plcb3_ID1903_28 --> 1 - 2 Original Alignment gGAGAAGAAGGAACTC-CAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAG---------------gt ggaccccctttacccaatgtctgagtcttaaatgtctggtttgccaaaaggGAGAAGAAGGAGCTCCCAGAAGATCCTGGATAGGAAGCGCAACAATAGCATTTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAAGTGTATGGGCACTGGgtgtaggtgctctgagtcagtgggtgcagggaaatagtttagcttctttttc Alignment from CESAR gGAGAAGAAGGAACTC-CAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGgt ggaccccctttacccaatgtctgagtcttaaatgtctggtttgccaaaaggGAGAAGAAGGAGCTCCCAGAAGATCCTGGATAGGAAGCGCAACAATAGCATTTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAAgtgtatgggcactgggtgtaggtgctctgagtcagtgggtgcagggaaatagtttagcatgtcttct Alignment from Spaln_aa2Genome GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT ggaccccctttacccaatgtctgagtcttaaatgtctggtttgccaaaagggagA---AGAAGGAGCTCCCAGAAGATCCTGGATAGGAAGCGCAACAATAGCATTTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAAGTgtatgggcactgggtgtaggtgctctgagtcagtgggtgcagggaaatagtttagcttctttttc Alignment from Spaln_nt2Genome GGAGAAGAAGGAACTCC-AGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT ggaccccctttacccaatgtctgagtcttaaatgtctggtttgccaaaagGGAGAAGAAGGAGCTCCCAGAAGATCCTGGATAGGAAGCGCAACAATAGCATTTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAAGTgtatgggcactgggtgtaggtgctctgagtcagtgggtgcagggaaatagtttagcttctttttc Alignment from Pairagon GGAGAAGAAGGAACT-CCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT ggaccccctttacccaatgtctgagtcttaaatgtctggtttgccaaaagGGAGAAGAAGGAGCTCCCAGAAGATCCTGGATAGGAAGCGCAACAATAGCATTTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAAGTgtatgggcactgggtgtaggtgctctgagtcagtgggtgcagggaaatagtttagcttctttttc Alignment from Exonerate_protein2genome GGAGAAGAAGGAACTC-CAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT ggaccccctttacccaatgtctgagtcttaaatgtctggtttgccaaaagGGAGAAGAAGGAGCTCCCAGAAGATCCTGGATAGGAAGCGCAACAATAGCATTTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAAGTgtatgggcactgggtgtaggtgctctgagtcagtgggtgcagggaaatagtttagcttctttttc Alignment from Exonerate_coding2genome GGAGAAGAAGGAACTC-CAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT ggaccccctttacccaatgtctgagtcttaaatgtctggtttgccaaaagGGAGAAGAAGGAGCTCCCAGAAGATCCTGGATAGGAAGCGCAACAATAGCATTTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAAGTgtatgggcactgggtgtaggtgctctgagtcagtgggtgcagggaaatagtttagcttctttttc Alignment from GeneWise GGAGAAGAAGGAACTCCAGAAGATCCTGGACAGGAAGCGCAACAACAGCATCTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAGGT ggaccccctttacccaatgtctgagtcttaaatgtctggtttgccaaaagggagA---AGAAGGAGCTCCCAGAAGATCCTGGATAGGAAGCGCAACAATAGCATTTCAGAGGCCAAGACAAGGGAGAAACACAAGAAGGAAGTgtatgggcactgggtgtaggtgctctgagtcagtgggtgcagggaaatagtttagcttctttttc #### Plcb3_ID1904_27 --> 0 - 2 Original Alignment GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAG-GAGCTGAATGAAag gcgaacacaacagccccatactgcgagccttttctgtttctccctattagGCGCATCAGTGGGTCAAGGAAGTTGTCCTGGATACACACACAACCCAATTCAAGAGGCTAAGGCGAACTGAAAGAAaggtacctacagatagaaagtcagtaggaccccctttacccaatgtctgagt Alignment from CESAR GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAG-GAGCTGAATGAAag gcgaacacaacagccccatactgcgagccttttctgtttctccctattagGCGCATCAGTGGGTCAAGGAAGTTGTCCTGGATACACACACAACCCAATTCAAGAGGCTAAGGCGAACTGAAAGAAaggtacctacagatagaaagtcagtaggaccccctttacccaatgtctgagt Alignment from Spaln_aa2Genome GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAGGGAG gcgaacacaacagccccatactgcgagccttttctgtttctccctattagGCGCATCAGTGGGTCAAGGAAGTTGTCCTGGATACACACACAACCCAATTCAAGAGGCTAAGGCGA---ACTGAAAGAAAGgtacctacagatagaaagtcagtaggaccccctttacccaatgtctgagt Alignment from Spaln_nt2Genome GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAG-GAGCTGAATGAAAG gcgaacacaacagccccatactgcgagccttttctgtttctccctattagGCGCATCAGTGGGTCAAGGAAGTTGTCCTGGATACACACACAACCCAATTCAAGAGGCTAAGGCGAACTGAAAGAAAGgtacctacagatagaaagtcagtaggaccccctttacccaatgtctgagt Alignment from Pairagon GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAG-GAGCTGAATGAAAG gcgaacacaacagccccatactgcgagccttttctgtttctccctattagGCGCATCAGTGGGTCAAGGAAGTTGTCCTGGATACACACACAACCCAATTCAAGAGGCTAAGGCGAACTGAAAGAAAGgtacctacagatagaaagtcagtaggaccccctttacccaatgtctgagt Alignment from Exonerate_protein2genome GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAG-GAGCTGAATGAAAG gcgaacacaacagccccatactgcgagccttttctgtttctccctattagGCGCATCAGTGGGTCAAGGAAGTTGTCCTGGATACACACACAACCCAATTCAAGAGGCTAAGGCGAACTGAAAGAAAGgtacctacagatagaaagtcagtaggaccccctttacccaatgtctgagt Alignment from Exonerate_coding2genome GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAG-GAGCTGAATGAAAG gcgaacacaacagccccatactgcgagccttttctgtttctccctattagGCGCATCAGTGGGTCAAGGAAGTTGTCCTGGATACACACACAACCCAATTCAAGAGGCTAAGGCGAACTGAAAGAAAGgtacctacagatagaaagtcagtaggaccccctttacccaatgtctgagt Alignment from GeneWise GCTCATCAGCGGCTCAAGGAGGTTGTCCTGGATACACACACAACACAGTTCAAGAGGCTGAAGGAGCTGAATGAAAGGGAG gcgaacacaacagccccatactgcgagccttttctgtttctccctattagGCGCATCAGTGGGTCAAGGAAGTTGTCCTGGATACACACACAACCCAATTCAAGAGGCTAAGGCGA---ACTGAAAGAAAGgtacctacagatagaaagtcagtaggaccccctttacccaatgtctgagt #### Plcb3_ID1906_25 --> 2 - 2 Original Alignment agGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAG-CTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCct ggcccccctcaacagccacaccaatttgaatgtacaactttttcccacagaaGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCATGGTGAAACCTTCGCAGCCGACAGGACCAAGACTTACGGGAATTACATAAGAAGCACCAACGTAAGGCTGTAGCCCTCACACGCCGTCTGCTGGATGGCCTAGCCCAGACAAGAGCTGAGGGGAAGTGCCGGCCATCCCCCAGTGCCctgtaagagtacttcaacgtgctgtaacttggcagtgtgtacttactggcat Alignment from CESAR agGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAG-CTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCct ggcccccctcaacagccacaccaatttgaatgtacaactttttcccacagaaGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCATGGTGAAACCTTCGCAGCCGACAGGACCAAGACTTACGGGAATTACATAAGAAGCACCAACGTAAGGCTGTAGCCCTCACACGCCGTCTGCTGGATGGCCTAGCCCAGACAAGAGCTGAGGGGAAGTGCCGGCCATCCCCCAGTGCCctgtaagagtacttcaacgtgctgtaacttggcagtgtgtacttactggcat Alignment from Spaln_aa2Genome AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAG-CTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ggcccccctcaacagccacaccaatttgaatgtacaactttttcccacagAAGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCATGGTGAAAcCTTCGCAGCCGACAGGACCAAGACTTACGGGAATTACATAAGAAGCACCAACGTAAGGCTGTAGCCCTCACACGCCGTCTGCTGGATGGCCTAGCCCAGACAAGAGCTGAGGGGAAGTGCCGGCCATCCCCCAGTGCCCTgtaagagtacttcaacgtgctgtaacttggcagtgtgtacttactggcat Alignment from Spaln_nt2Genome AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAGC-TACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ggcccccctcaacagccacaccaatttgaatgtacaactttttcccacagAAGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCATGGTGAAACCTTCGCAGCCGACAGGACCAAGACTTACGGGAATTACATAAGAAGCACCAACGTAAGGCTGTAGCCCTCACACGCCGTCTGCTGGATGGCCTAGCCCAGACAAGAGCTGAGGGGAAGTGCCGGCCATCCCCCAGTGCCCTgtaagagtacttcaacgtgctgtaacttggcagtgtgtacttactggcat Alignment from Pairagon AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAG-CTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ggcccccctcaacagccacaccaatttgaatgtacaactttttcccacagAAGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCATGGTGAAACCTTCGCAGCCGACAGGACCAAGACTTACGGGAATTACATAAGAAGCACCAACGTAAGGCTGTAGCCCTCACACGCCGTCTGCTGGATGGCCTAGCCCAGACAAGAGCTGAGGGGAAGTGCCGGCCATCCCCCAGTGCCCTgtaagagtacttcaacgtgctgtaacttggcagtgtgtacttactggcat Alignment from Exonerate_protein2genome AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAG-CTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ggcccccctcaacagccacaccaatttgaatgtacaactttttcccacagAAGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCATGGTGAAACCTTCGCAGCCGACAGGACCAAGACTTACGGGAATTACATAAGAAGCACCAACGTAAGGCTGTAGCCCTCACACGCCGTCTGCTGGATGGCCTAGCCCAGACAAGAGCTGAGGGGAAGTGCCGGCCATCCCCCAGTGCCCTgtaagagtacttcaacgtgctgtaacttggcagtgtgtacttactggcat Alignment from Exonerate_coding2genome AGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAG-CTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ggcccccctcaacagccacaccaatttgaatgtacaactttttcccacagAAGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCATGGTGAAACCTTCGCAGCCGACAGGACCAAGACTTACGGGAATTACATAAGAAGCACCAACGTAAGGCTGTAGCCCTCACACGCCGTCTGCTGGATGGCCTAGCCCAGACAAGAGCTGAGGGGAAGTGCCGGCCATCCCCCAGTGCCCTgtaagagtacttcaacgtgctgtaacttggcagtgtgtacttactggcat Alignment from GeneWise -------------TTGATTGCCAGCATCCTCTCTGAGGTGACCCCTACACCTCTAGAGGAGCTCAGAAGCCACAAGGCTATGGTGAAG-CTACGGAGCCGGCAGGATCGAGACCTGCGGGAGTTGCATAAGAAGCACCAGCGCAAGGCTGTGGCCCTCACCCGCCGCCTTCTGGATGGCCTGGCCCAGGCCAGGGCTGAGGGGAAGTGCCGGCCCTCCCCCAGTGCCCT ggcccccctcaacagCCACACCAATTTGAATGTACAACTTTTTCCCACAGAAGTAATCCCCACACCTCTAGAAGAGCTCAGAAGTCACAAGGCCATGGTGAAACCTTCGCAGCCGACAGGACCAAGACTTACGGGAATTACATAAGAAGCACCAACGTAAGGCTGTAGCCCTCACACGCCGTCTGCTGGATGGCCTAGCCCAGACAAGAGCTGAGGGGAAGTGCCGGCCATCCCCCAGTGCCCTgtaagagtacttcaacgtgctgtaacttggcagtgtgtacttactggcat #### Plcb3_ID1910_21 --> 2 - 1 Original Alignment gaTACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTG-CCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGg ctgcactaaagcaattacaaagttgtgttgtctttgtttcttccctccaggaTACCACTATGTTTGCTTGCGAAATGAGGCTAACCAACCTTTGTGCTTGCCCTGCCTTGCTTATATACACTGAAGCTTCCGACTACATCCCAGATGACCACCAGggtcagagagatgaccaccagggtgggggacaaggtaaaggtcttatgtgg Alignment from CESAR gaTACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTG-CCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGg ctgcactaaagcaattacaaagttgtgttgtctttgtttcttccctccaggaTACCACTATGTTTGCTTGCGAAATGAGGCTAACCAACCTTTGTGCTTGCCCTGCCTTGCTTATATACACTGAAGCTTCCGACTACATCCCAGATGACCACCAGggtcagagagatgaccaccagggtgggggacaaggtaaaggtcttatgtgg Alignment from Spaln_aa2Genome GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCTGCCCTG-CTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG ctgcactaaagcaattacaaagttgtgttgtctttgtttcttccctccagGATACCACTATGTTTGCTTGCGAAATGAGGCTAACCAACCTTTGTGCTTGCCCTGCCTTgCTTATATACACTGAAGCTTCCGACTACATCCCAGATGACCACCAGGgtcagagagatgaccaccagggtgggggacaaggtaaaggtcttatgtgg Alignment from Spaln_nt2Genome GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTG-CCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG ctgcactaaagcaattacaaagttgtgttgtctttgtttcttccctccagGATACCACTATGTTTGCTTGCGAAATGAGGCTAACCAACCTTTGTGCTTGCCCTGCCTTGCTTATATACACTGAAGCTTCCGACTACATCCCAGATGACCACCAGGgtcagagagatgaccaccagggtgggggacaaggtaaaggtcttatgtgg Alignment from Pairagon GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTG-CCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG ctgcactaaagcaattacaaagttgtgttgtctttgtttcttccctccagGATACCACTATGTTTGCTTGCGAAATGAGGCTAACCAACCTTTGTGCTTGCCCTGCCTTGCTTATATACACTGAAGCTTCCGACTACATCCCAGATGACCACCAGGgtcagagagatgaccaccagggtgggggacaaggtaaaggtcttatgtgg Alignment from Exonerate_protein2genome GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTG-CCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG ctgcactaaagcaattacaaagttgtgttgtctttgtttcttccctccagGATACCACTATGTTTGCTTGCGAAATGAGGCTAACCAACCTTTGTGCTTGCCCTGCCTTGCTTATATACACTGAAGCTTCCGACTACATCCCAGATGACCACCAGGgtcagagagatgaccaccagggtgggggacaaggtaaaggtcttatgtgg Alignment from Exonerate_coding2genome GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTG-CCTGCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG ctgcactaaagcaattacaaagttgtgttgtctttgtttcttccctccagGATACCACTATGTTTGCTTGCGAAATGAGGCTAACCAACCTTTGTGCTTGCCCTGCCTTGCTTATATACACTGAAGCTTCCGACTACATCCCAGATGACCACCAGGgtcagagagatgaccaccagggtgggggacaaggtaaaggtcttatgtgg Alignment from GeneWise GATACCACTATGTCTGCCTGCGAAACGAGGCCAACCAACCTTTGTGCCTGCCT-GCCCTGCTTATCTACACTGAAGCTTCTGACTACATCCCAGATGACCACCAGG ctgcactaaagcaattacaaagttgtgttgtctttgtttcttccctccagGATACCACTATGTTTGCTTGCGAAATGAGGCTAACCAACCTTTGTGCTTGCCCTGCCTTGCTTATATACACTGAAGCTTCCGACTACATCCCAGATGACCACCAGGgtcagagagatgaccaccagggtgggggacaaggtaaaggtcttatgtgg #### Plcb3_ID1911_20 --> 0 - 1 Original Alignment GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTG-CCTGTCTCTGCTATCCGCTCAg gctcagtcttgtcctatgcatagtcttgtacgtacatttgtgtgtggcagGTTGTACTACCCACAGTGGCCTCACTCCGCATTGCAGTCTTTGAGAAAGGTGGCAAGTTTGTTGGGCACCGAACCCTACCCTGTATCTGCAATCCACTCAggtaagcctgggggctctgcactaaagcaattacaaagttgtgtactcttg Alignment from CESAR GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTG-CCTGTCTCTGCTATCCGCTCAg gctcagtcttgtcctatgcatagtcttgtacgtacatttgtgtgtggcagGTTGTACTACCCACAGTGGCCTCACTCCGCATTGCAGTCTTTGAGAAAGGTGGCAAGTTTGTTGGGCACCGAACCCTACCCTGTATCTGCAATCCACTCAggtaagcctgggggctctgcactaaagcaattacaaagttgtgttgtcttt Alignment from Spaln_aa2Genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTG-CCTGTCTCTGCTATCCGCTCAG gctcagtcttgtcctatgcatagtcttgtacgtacatttgtgtgtggcagGTTGTACTACCCACAGTGGCCTCACTCCGCATTGCAGTCTTTGAGAAAGGTGGCAAGTTTGTTGGGCACCGAACCCTAcCCTGTATCTGCAATCCACTCAGgtaagcctgggggctctgcactaaagcaattacaaagttgtgtactcttg Alignment from Spaln_nt2Genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCC-TGTCTCTGCTATCCGCTCAG gctcagtcttgtcctatgcatagtcttgtacgtacatttgtgtgtggcagGTTGTACTACCCACAGTGGCCTCACTCCGCATTGCAGTCTTTGAGAAAGGTGGCAAGTTTGTTGGGCACCGAACCCTACCCTGTATCTGCAATCCACTCAGgtaagcctgggggctctgcactaaagcaattacaaagttgtgtactcttg Alignment from Pairagon GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTG-CCTGTCTCTGCTATCCGCTCAG gctcagtcttgtcctatgcatagtcttgtacgtacatttgtgtgtggcagGTTGTACTACCCACAGTGGCCTCACTCCGCATTGCAGTCTTTGAGAAAGGTGGCAAGTTTGTTGGGCACCGAACCCTACCCTGTATCTGCAATCCACTCAGgtaagcctgggggctctgcactaaagcaattacaaagttgtgtactcttg Alignment from Exonerate_protein2genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTG-CCTGTCTCTGCTATCCGCTCAG gctcagtcttgtcctatgcatagtcttgtacgtacatttgtgtgtggcagGTTGTACTACCCACAGTGGCCTCACTCCGCATTGCAGTCTTTGAGAAAGGTGGCAAGTTTGTTGGGCACCGAACCCTACCCTGTATCTGCAATCCACTCAGgtaagcctgggggctctgcactaaagcaattacaaagttgtgtactcttg Alignment from Exonerate_coding2genome GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTG-CCTGTCTCTGCTATCCGCTCAG gctcagtcttgtcctatgcatagtcttgtacgtacatttgtgtgtggcagGTTGTACTACCCACAGTGGCCTCACTCCGCATTGCAGTCTTTGAGAAAGGTGGCAAGTTTGTTGGGCACCGAACCCTACCCTGTATCTGCAATCCACTCAGgtaagcctgggggctctgcactaaagcaattacaaagttgtgtactcttg Alignment from GeneWise GTTGTGCTGCCCACGCTGGCCTCACTTCGCATCGCAGCCTTTGAGGAGGGTGGCAAATTTGTTGGGCACCGTATCCTGCCT- --------------------GTCT gctcagtcttgtcctatgcatagtcttgtacgtacatttgtgtgtggcagGTTGTACTACCCACAGTGGCCTCACTCCGCATTGCAGTCTTTGAGAAAGGTGGCAAGTTTGTTGGGCACCGAACCCTACCCTgtatctgcaatccactcaggtaagcctgggggctctgcactaaagCAATTACAAAGTTGTGTACTCTTG #### Plcb3_ID1914_17 --> 1 - 1 Original Alignment aTACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTC-AACTTCCAGACCTTGg cctgccggcagatgggatcccaggagaaactaaaacactcttaatttcagaTACAACAGACAACAGCTCAGCCAGATTTACACTAAGAGCAAACAGGTGGACTCTTCAAACTACATGCCTTACCTCTTTTGGAACGTGGGTTGCCAACTTGTTGCCCTCCAATTTCCAGACTCTGggtaaccgagcgctagccctggcttaggaatttttgccaagtaaagtaatt Alignment from CESAR aTACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTC-AACTTCCAGACCTTGg cctgccggcagatgggatcccaggagaaactaaaacactcttaatttcagaTACAACAGACAACAGCTCAGCCAGATTTACACTAAGAGCAAACAGGTGGACTCTTCAAACTACATGCCTTACCTCTTTTGGAACGTGGGTTGCCAACTTGTTGCCCTCCAATTTCCAGACTCTGggtaaccgagcgctagccctggcttaggaatttttgccaagtaaagtaatt Alignment from Spaln_aa2Genome ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTC-AACTTCCAGACCTTGG cctgccggcagatgggatcccaggagaaactaaaacactcttaatttcagATACAACAGACAACAGCTCAGCCAGATTTACACTAAGAGCAAACAGGTGGACTCTTCAAACTACATGCCTTACCTCTTTTGGAACGTGGGTTGCCAACTTGTTGCCCTCcAATTTCCAGACTCTGGgtaaccgagcgctagccctggcttaggaatttttgccaagtaaagtaatt Alignment from Spaln_nt2Genome ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTC-AACTTCCAGACCTTGG cctgccggcagatgggatcccaggagaaactaaaacactcttaatttcagATACAACAGACAACAGCTCAGCCAGATTTACACTAAGAGCAAACAGGTGGACTCTTCAAACTACATGCCTTACCTCTTTTGGAACGTGGGTTGCCAACTTGTTGCCCTCCAATTTCCAGACTCTGGgtaaccgagcgctagccctggcttaggaatttttgccaagtaaagtaatt Alignment from Pairagon ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCT-CAACTTCCAGACCTTGG cctgccggcagatgggatcccaggagaaactaaaacactcttaatttcagATACAACAGACAACAGCTCAGCCAGATTTACACTAAGAGCAAACAGGTGGACTCTTCAAACTACATGCCTTACCTCTTTTGGAACGTGGGTTGCCAACTTGTTGCCCTCCAATTTCCAGACTCTGGgtaaccgagcgctagccctggcttaggaatttttgccaagtaaagtaatt Alignment from Exonerate_protein2genome ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTC-AACTTCCAGACCTTGG cctgccggcagatgggatcccaggagaaactaaaacactcttaatttcagATACAACAGACAACAGCTCAGCCAGATTTACACTAAGAGCAAACAGGTGGACTCTTCAAACTACATGCCTTACCTCTTTTGGAACGTGGGTTGCCAACTTGTTGCCCTCCAATTTCCAGACTCTGGgtaaccgagcgctagccctggcttaggaatttttgccaagtaaagtaatt Alignment from Exonerate_coding2genome ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCCCTC-AACTTCCAGACCTTGG cctgccggcagatgggatcccaggagaaactaaaacactcttaatttcagATACAACAGACAACAGCTCAGCCAGATTTACACTAAGAGCAAACAGGTGGACTCTTCAAACTACATGCCTTACCTCTTTTGGAACGTGGGTTGCCAACTTGTTGCCCTCCAATTTCCAGACTCTGGgtaaccgagcgctagccctggcttaggaatttttgccaagtaaagtaatt Alignment from GeneWise ATACAACAAACAGCAGCTCAGCCGCATCTACCCTAAGGGCACACGAGTGGACTCCTCCAACTACATGCCTCAGCTCTTCTGGAACGTGGGTTGCCAGCTTGTTGCC-CTCAACTTCCAGACCTTGG cctgccggcagatgggatcccaggagaaactaaaacactcttaatttcagATACAACAGACAACAGCTCAGCCAGATTTACACTAAGAGCAAACAGGTGGACTCTTCAAACTACATGCCTTACCTCTTTTGGAACGTGGGTTGCCAACTTGTTGCCCTCCAATTTCCAGACTCTGGgtaaccgagcgctagccctggcttaggaatttttgccaagtaaagtaatt #### Plcb3_ID1922_9 --> 1 - 1 Original Alignment aGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAG-CTCATGGACTTTATCAAC------CAGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCg catatcttgtggctaccatcaggagagttttcttttatcccttcttttagaGGCATGAAGGGCAAGCCCTACCTT---CTTGAGCAGCCTGATGGACTTTGTGAACCAACAAGAGAAGCAGAGAGACCCAAGATTG---------------------------TCCTCACAAGCCCGTCTACTTATTGAGGAGTATGAGACAAACAAACAGTTTCTGGAGCGTggtatgcctgtataggcaagatggcagtgtgggtgggatccacctagctta Alignment from CESAR aGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAG-CTCATGGACTTTATCAACCAG------AAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCg catatcttgtggctaccatcaggagagttttcttttatcccttcttttagaGGCATGAAGGGCAAGCCCTACCTT---CTTGAGCAGCCTGATGGACTTTGTGAACCAACAAGAGAAGCAGAGAGACCCAAGATTG---------------------------TCCTCACAAGCCCGTCTACTTATTGAGGAGTATGAGACAAACAAACAGTTTCTGGAGCGTggtatgcctgtataggcaagatggcagtgtgggtgggatccacctagctta Alignment from Spaln_aa2Genome AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAG-CTCATGGACTTTATCAACCAG------AAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG catatcttgtggctaccatcaggagagttttcttttatcccttcttttagAGGCATGAAGGGCAAGCCCTACCTT---CTTGAGCAGcCTGATGGACTTTGTGAACCAACAAGAGAAGCAGAGAGACCCAAGATTG---------------------------TCCTCACAAGCCCGTCTACTTATTGAGGAGTATGAGACAAACAAACAGTTTCTGGAGCGTGgtatgcctgtataggcaagatggcagtgtgggtgggatccacctagctta Alignment from Spaln_nt2Genome AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGC-TCATGGACTTTATCAACCA------GAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG catatcttgtggctaccatcaggagagttttcttttatcccttcttttagAGGCATGAAGGGCAAGCCCTACCT---TCTTGAGCAGCCTGATGGACTTTGTGAACCAACAAGAGAAGCAGAGAGACCCAAGATT---------------------------GTCCTCACAAGCCCGTCTACTTATTGAGGAGTATGAGACAAACAAACAGTTTCTGGAGCGTGgtatgcctgtataggcaagatggcagtgtgggtgggatccacctagctta Alignment from Pairagon AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAG-CTCATGGACTTTATCAACC------AGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG catatcttgtggctaccatcaggagagttttcttttatcccttcttttagAGGCATGAAGGGCAAGCCCTACCT---TCTTGAGCAGCCTGATGGACTTTGTGAACCAACAAGAGAAGCAGAGAGACCCAAGATT---------------------------GTCCTCACAAGCCCGTCTACTTATTGAGGAGTATGAGACAAACAAACAGTTTCTGGAGCGTGgtatgcctgtataggcaagatggcagtgtgggtgggatccacctagctta Alignment from Exonerate_protein2genome TCACTCTGGAGCAGCTCATGGACTTTATCAACCAGAAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG catatcttgtggctaccatcaggagagttttcttttatcccttcttttagAGGCATGAAGGGCAAGCCCTACCTTCTTGAGCAGCCTGATGGACTTTGTGAACCAACAAGAGAAGCAGAGAGACCCAAGATTGTCCTCACAAGCCCGTCTACTTATTGAGGAGTATGAGACAAACAAACAGTTTCTGGAGCGTGgtatgcctgtataggcaagatggcagtgtgggtgggatccacctagctta Alignment from Exonerate_coding2genome catatcttgtggctaccatcaggagagttttcttttatcccttcttttagaggcatgaagggcaagccctaccttcttgagcagcctgatggactttgtgaaccaacaagagaagcagagagacccaagattgtcctcacaagcccgtctacttattgaggagtatgagacaaacaaacagtttctggagcgtggtatgcctgtataggcaagatggcagtgtgggtgggatccacctagctta Alignment from GeneWise AGGTGCCAAGGGCAAGCCGTACCTCACTCTGGAGCAGCTCATGGACTTTATCAACCAG------AAGCAGAGAGACCCGAGACTCAACGAAGTGCTGTACCCGCCACTTCGGTCCTCACAGGCTCGGCTGCTCATTGAGAAGTACGAGACGAACAAACAGTTCCTGGAGCGCG catatcttgtggctaccatcaggagagttttcttttatcccttcttttagAGGCATGAAGGGCAAGCCCTACCTTC--TTGAGCAGCCTGATGGACTTTGTGAACCAACAAGAGAAGCAGAGAGACCCAAGATTG---------------------------TCCTCACAAGCCCGTCTACTTATTGAGGAGTATGAGACAAACAAACAGTTTCTGGAGCGTGgtatgcctgtataggcaagatggcagtgtgggtgggatccacctagctta #### Plcb3_ID1923_8 --> 1 - 2 Original Alignment tGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAG-CGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGat tttgaaactggttaaccaagattctcacatacagggatttttctctttagtGAATCCATTCGCCCTGATGAATTTCCCTTGGAAGTTTTTGAGCCGGTTCTTGAATAAACTGTGTCTGCGACCAGATATTGACAAGATCGTGCTGGAGatgtgggcaacttggaaatggattccatggggtggactctgactctggtgat Alignment from CESAR tGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAG-CGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGat tttgaaactggttaaccaagattctcacatacagggatttttctctttagtGAATCCATTCGCCCTGATGAATTTCCCTTGGAAGTTTTTGAGCCGGTTCTTGAATAAACTGTGTCTGCGACCAGATATTGACAAGATCGTGCTGGAGatgtgggcaacttggaaatggattccatggggtggactctgactctggtgat Alignment from Spaln_aa2Genome TGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAG-CGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGAT tttgaaactggttaaccaagattctcacatacagggatttttctctttagTGAATCCATTCGCCCTGATGAATTTCCCTTGGAAGTTTTTGAGcCGGTTCTTGAATAAACTGTGTCTGCGACCAGATATTGACAAGATCGTGCTGGAGATgtgggcaacttggaaatggattccatggggtggactctgactctggtgat Alignment from Spaln_nt2Genome TGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAG-CGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGAT tttgaaactggttaaccaagattctcacatacagggatttttctctttagTGAATCCATTCGCCCTGATGAATTTCCCTTGGAAGTTTTTGAGCCGGTTCTTGAATAAACTGTGTCTGCGACCAGATATTGACAAGATCGTGCTGGAGATgtgggcaacttggaaatggattccatggggtggactctgactctggtgat Alignment from Pairagon TGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAG-CGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGAT tttgaaactggttaaccaagattctcacatacagggatttttctctttagTGAATCCATTCGCCCTGATGAATTTCCCTTGGAAGTTTTTGAGCCGGTTCTTGAATAAACTGTGTCTGCGACCAGATATTGACAAGATCGTGCTGGAGATgtgggcaacttggaaatggattccatggggtggactctgactctggtgat Alignment from Exonerate_protein2genome TGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTTGAG-CGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGATAGGTGCCAAGGGCAAGCCGTACCT tttgaaactggttaaccaagattctcacatacagggatttttctctttagTGAATCCATTCGCCCTGATGAATTTCCCTTGGAAGTTTTTGAGCCGGTTCTTGAATAAACTGTGTCTGCGACCAGATATTGACAAGATCGTGCTGGAGATGTGGGCAACTTGGAAATGGATTCCatggggtggactctgactctggtgat Alignment from Exonerate_coding2genome tttgaaactggttaaccaagattctcacatacagggatttttctctttagtgaatccattcgccctgatgaatttcccttggaagtttttgagccggttcttgaataaactgtgtctgcgaccagatattgacaagatcgtgctggagatgtgggcaacttggaaatggattccatggggtggactctgactctggtgat Alignment from GeneWise TGAGTCCATTCGCCCTGATGAGTTTCCCTTGGAAATTTTT-GAGCGGTTCTTGAATAAACTGTGTCTGCGCCCGGATATTGACAAGATCCTGCTGGAGAT tttgaaactggttaaccaagattctcacatacagggatttttctctttagTGAATCCATTCGCCCTGATGAATTTCCCTTGGAAGTTTTTGAGCCGGTTCTTGAATAAACTGTGTCTGCGACCAGATATTGACAAGATCGTGCTGGAGATgtgggcaacttggaaatggattccatggggtggactctgactctggtgat #### Plcb3_ID1924_7 --> 1 - 2 Original Alignment cATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAG-TCCTGTGGCCTCAACTTCAACCGAgt ttctgctgcctggctaatcattcgaacttccttgcggttttttattttagcATTCTGAAGATGTTCTCGGCAGATAAGAAGCGGGTAGAGACTGCGCTGGAGCTCCTGTGGTCTCAACTTAAACCGGgtgtagtggtcagggccagggtgtgagttgggtcagattggcttttgcaatt Alignment from CESAR cATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAG-TCCTGTGGCCTCAACTTCAACCGAgt ttctgctgcctggctaatcattcgaacttccttgcggttttttattttagcATTCTGAAGATGTTCTCGGCAGATAAGAAGCGGGTAGAGACTGCGCTGGAGCTCCTGTGGTCTCAACTTAAACCGGgtgtagtggtcagggccagggtgtgagttgggtcagattggcttttgcaatt Alignment from Spaln_aa2Genome CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAG-TCCTGTGGCCTCAACTTCAACCGAGT ttctgctgcctggctaatcattcgaacttccttgcggttttttattttagCATTCTGAAGATGTTCTCGGCAGATAAGAAGCGGGTAGAGACTGCGCTGGAGcTCCTGTGGTCTCAACTTAAACCGGGTgtagtggtcagggccagggtgtgagttgggtcagattggcttttgcaatt Alignment from Spaln_nt2Genome CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAG-TCCTGTGGCCTCAACTTCAACCGAGT ttctgctgcctggctaatcattcgaacttccttgcggttttttattttagCATTCTGAAGATGTTCTCGGCAGATAAGAAGCGGGTAGAGACTGCGCTGGAGCTCCTGTGGTCTCAACTTAAACCGGGTgtagtggtcagggccagggtgtgagttgggtcagattggcttttgcaatt Alignment from Pairagon CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAG-TCCTGTGGCCTCAACTTCAACCGAGT ttctgctgcctggctaatcattcgaacttccttgcggttttttattttagCATTCTGAAGATGTTCTCGGCAGATAAGAAGCGGGTAGAGACTGCGCTGGAGCTCCTGTGGTCTCAACTTAAACCGGGTgtagtggtcagggccagggtgtgagttgggtcagattggcttttgcaatt Alignment from Exonerate_protein2genome CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAG-TCCTGTGGCCTCAACTTCAACCGAGT ttctgctgcctggctaatcattcgaacttccttgcggttttttattttagCATTCTGAAGATGTTCTCGGCAGATAAGAAGCGGGTAGAGACTGCGCTGGAGCTCCTGTGGTCTCAACTTAAACCGGGTgtagtggtcagggccagggtgtgagttgggtcagattggcttttgcaatt Alignment from Exonerate_coding2genome ttctgctgcctggctaatcattcgaacttccttgcggttttttattttagcattctgaagatgttctcggcagataagaagcgggtagagactgcgctggagctcctgtggtctcaacttaaaccgggtgtagtggtcagggccagggtgtgagttgggtcagattggcttttgcaatt Alignment from GeneWise CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAG-TCCTGTGGCCTCAACTTCAACCGAGTT-- ttctgctgcctggctaatcattcgaacttccttgcggttttttattttagCATTCTGAAGATGTTCTCGGCAGATAAGAAGCGGGTAGAGACTGCGCTGGAGCTCCTGTGGTCTCAACTTAAACCGGGTGTAgtggtcagggccagggtgtgagttgggtcagattggcttttgcaatt #### Plcb3_ID1925_6 --> 1 - 2 Original Alignment aTACACGAAGCTGAAGCTGCAG-GTGAACCAGGATGGACGGATTCCGGTCAAGaa tttgtttcactgacaaaacccagggaccatgtttttgctaactcccacagaTACACAAAGCTAAAGCTGCAGCGTCAATCAGGACGGGCGGATTCCAGTCAAGaagtctgatcccatgccccgaagcatcttcccagctgccctgtcactggtca Alignment from CESAR aTACACGAAGCTGAAGCTGCAG-GTGAACCAGGATGGACGGATTCCGGTCAAGaa tttgtttcactgacaaaacccagggaccatgtttttgctaactcccacagaTACACAAAGCTAAAGCTGCAGCGTCAATCAGGACGGGCGGATTCCAGTCAAGaagtctgatcccatgccccgaagcatcttcccagctgccctgtcactggtca Alignment from Spaln_aa2Genome ATACACGAAGCTGAAGCTGCAG-GTGAACCAGGATGGACGGATTCCGGTCAAGAA tttgtttcactgacaaaacccagggaccatgtttttgctaactcccacagATACACAAAGCTAAAGCTGCAGcGTCAATCAGGACGGGCGGATTCCAGTCAAGAAgtctgatcccatgccccgaagcatcttcccagctgccctgtcactggtca Alignment from Spaln_nt2Genome ATACACGAAGCTGAAGCTGCAG-GTGAACCAGGATGGACGGATTCCGGTCAAGAA tttgtttcactgacaaaacccagggaccatgtttttgctaactcccacagATACACAAAGCTAAAGCTGCAGCGTCAATCAGGACGGGCGGATTCCAGTCAAGAAgtctgatcccatgccccgaagcatcttcccagctgccctgtcactggtca Alignment from Pairagon ATACACGAAGCTGAAGCTGCAG-GTGAACCAGGATGGACGGATTCCGGTCAAGAA tttgtttcactgacaaaacccagggaccatgtttttgctaactcccacagATACACAAAGCTAAAGCTGCAGCGTCAATCAGGACGGGCGGATTCCAGTCAAGAAgtctgatcccatgccccgaagcatcttcccagctgccctgtcactggtca Alignment from Exonerate_protein2genome ATACACGAAGCTGAAGCTGCAG-GTGAACCAGGATGGACGGATTCCGGTCAAGAA tttgtttcactgacaaaacccagggaccatgtttttgctaactcccacagATACACAAAGCTAAAGCTGCAGCGTCAATCAGGACGGGCGGATTCCAGTCAAGAAgtctgatcccatgccccgaagcatcttcccagctgccctgtcactggtca Alignment from Exonerate_coding2genome tttgtttcactgacaaaacccagggaccatgtttttgctaactcccacagatacacaaagctaaagctgcagcgtcaatcaggacgggcggattccagtcaagaagtctgatcccatgccccgaagcatcttcccagctgccctgtcactggtca Alignment from GeneWise -GTGAACCAGGATGGACGGATTCCGGTCAAGAA tttgtttcactgacaaaacccagggaccatgtttttgctaactcccacagatacacaaagctaaagctgcagCGTCAATCAGGACGGGCGGATTCCAGTCAAGAAgtctgatcccatgccccgaagcatcttcccagctgccctgtcactggtca #### Plcb3_ID1926_5 --> 0 - 2 Original Alignment GTCTGGTCAGAGGAGTTGTTTAAACTGGCC-ATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAgc gggttaacccccttgctcccttcaactatttttcttttaaaaatatttagGTATGGTCAGAGGAGTTGTTTAGACTAGCCCATGAACATATTGGCTCAGAATGCATCCCAGAACACATTCCTGCGTAAAgcgtattactgcaaccacttaggggagtgctggaatgtcccactgtgcacat Alignment from CESAR GTCTGGTCAGAGGAGTTGTTTAAACTGGCC-ATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAgc gggttaacccccttgctcccttcaactatttttcttttaaaaatatttagGTATGGTCAGAGGAGTTGTTTAGACTAGCCCATGAACATATTGGCTCAGAATGCATCCCAGAACACATTCCTGCGTAAAgcgtattactgcaaccacttaggggagtgctggaatgtcccactgtgcacat Alignment from Spaln_aa2Genome GTCTGGTCAGAGGAGTTGTTTAAACTGGCC-ATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC gggttaacccccttgctcccttcaactatttttcttttaaaaatatttagGTATGGTCAGAGGAGTTGTTTAGACTAGCCcATGAACATATTGGCTCAGAATGCATCCCAGAACACATTCCTGCGTAAAGCgtattactgcaaccacttaggggagtgctggaatgtcccactgtgcacat Alignment from Spaln_nt2Genome GTCTGGTCAGAGGAGTTGTTTAAACTGGCC-ATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC gggttaacccccttgctcccttcaactatttttcttttaaaaatatttagGTATGGTCAGAGGAGTTGTTTAGACTAGCCCATGAACATATTGGCTCAGAATGCATCCCAGAACACATTCCTGCGTAAAGCgtattactgcaaccacttaggggagtgctggaatgtcccactgtgcacat Alignment from Pairagon GTCTGGTCAGAGGAGTTGTTTAAACTGG-CCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC gggttaacccccttgctcccttcaactatttttcttttaaaaatatttagGTATGGTCAGAGGAGTTGTTTAGACTAGCCCATGAACATATTGGCTCAGAATGCATCCCAGAACACATTCCTGCGTAAAGCgtattactgcaaccacttaggggagtgctggaatgtcccactgtgcacat Alignment from Exonerate_protein2genome GTCTGGTCAGAGGAGTTGTTTAAACTGGCC-ATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC gggttaacccccttgctcccttcaactatttttcttttaaaaatatttagGTATGGTCAGAGGAGTTGTTTAGACTAGCCCATGAACATATTGGCTCAGAATGCATCCCAGAACACATTCCTGCGTAAAGCgtattactgcaaccacttaggggagtgctggaatgtcccactgtgcacat Alignment from Exonerate_coding2genome gggttaacccccttgctcccttcaactatttttcttttaaaaatatttaggtatggtcagaggagttgtttagactagcccatgaacatattggctcagaatgcatcccagaacacattcctgcgtaaagcgtattactgcaaccacttaggggagtgctggaatgtcccactgtgcacat Alignment from GeneWise GTCTGGTCAGAGGAGTTGTTTAAACTG-GCCATGAACATATTGGCTCAGAACGCCTCCCGGAACACCTTCCTGCGGAAAGC gggttaacccccttgctcccttcaactatttttcttttaaaaatatttagGTATGGTCAGAGGAGTTGTTTAGACTAGCCCATGAACATATTGGCTCAGAATGCATCCCAGAACACATTCCTGCGTAAAGCgtattactgcaaccacttaggggagtgctggaatgtcccactgtgcacat #### Plcb3_ID1927_4 --> 0 - 0 Original Alignment GACCCTAAGATT-CGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gcccctcctcttcttgttcattctatacctttggtgtttgtattttatagGACCCTAAGATTCCGAGAAGTT------TTTGGCGGCCCTGATACACGACTGGAGGAGAGATTGATGACAGTGGTTGCTGGGCCGGATTTAGTAACTACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtaagcgtttcccaggctggtctccaaattcaaagcatttgttcagtcaa Alignment from CESAR GACCCTAAGATT-CGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gcccctcctcttcttgttcattctatacctttggtgtttgtattttatagGACCCTAAGATTCCGAGAAGTT------TTTGGCGGCCCTGATACACGACTGGAGGAGAGATTGATGACAGTGGTTGCTGGGCCGGATTTAGTAACTACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtaagcgtttcccaggctggtctccaaattcaaagcatttgttcagtcaa Alignment from Spaln_aa2Genome GATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gcccctcctcttcttgttcattctatacctttggtgtttgtattttataggaccctaagATTCCGAGAAGTT------TTTGGCGGCCCTGATACACGACTGGAGGAGAGATTGATGACAGTGGTTGCTGGGCCGGATTTAGTAACTACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtaagcgtttcccaggctggtctccaaattcaaagcatttgttcagtcaa Alignment from Spaln_nt2Genome GACCCTAAGATTC-GAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gcccctcctcttcttgttcattctatacctttggtgtttgtattttatagGACCCTAAGATTCCGAGAAGT------TTTTGGCGGCCCTGATACACGACTGGAGGAGAGATTGATGACAGTGGTTGCTGGGCCGGATTTAGTAACTACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtaagcgtttcccaggctggtctccaaattcaaagcatttgttcagtcaa Alignment from Pairagon GACCCTAAGATT-CGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gcccctcctcttcttgttcattctatacctttggtgtttgtattttatagGACCCTAAGATTCCGAGAAGT------TTTTGGCGGCCCTGATACACGACTGGAGGAGAGATTGATGACAGTGGTTGCTGGGCCGGATTTAGTAACTACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtaagcgtttcccaggctggtctccaaattcaaagcatttgttcagtcaa Alignment from Exonerate_protein2genome GACCCTAAGATT-CGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gcccctcctcttcttgttcattctatacctttggtgtttgtattttatagGACCCTAAGATTCCGAGAAGTT------TTTGGCGGCCCTGATACACGACTGGAGGAGAGATTGATGACAGTGGTTGCTGGGCCGGATTTAGTAACTACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtaagcgtttcccaggctggtctccaaattcaaagcatttgttcagtcaa Alignment from Exonerate_coding2genome gcccctcctcttcttgttcattctatacctttggtgtttgtattttataggaccctaagattccgagaagtttttggcggccctgatacacgactggaggagagattgatgacagtggttgctgggccggatttagtaactaccacattcttgaacttcatggctgtgcaggatggcacagtcaaggtaagcgtttcccaggctggtctccaaattcaaagcatttgttcagtcaa Alignment from GeneWise -------------TTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACAGTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gcccctcctcttcttgttcattctatacctttggtgtttgtattttataggaccctaagATTCCGAGAAGTTTTTGGCGGCCCTGATACACGACTGGAGGAGAGATTGATGACAGTGGTTGCTGGGCCGGATTTAGTAACTACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtaagcgtttcccaggctggtctccaaattcaaagcatttgttcagtcaa #### Plce1_ID7626_12 --> 1 - 1 Original Alignment cATCAGGAGCCGCAAGGACTTGAAGGACATCTTTGACATCTACTCTGTACCCTGCAATCGGTCTGCCTCGGAGTCAGCCCCACTCTACACCAAC-CTGACAATCGAAGAAAATACCAGCGATCTTCAGCCTGACCTAg catatttttattccgacataaaggctacaaaatttttttttaaactctagcATTAGGAGCCGAAAGGACTTGAAGGACATCTTTGACATCTACACTGTG---------AGATCTACCTCAGAGTCCACCCCTCTCTATACCAACCTGGACAATTGAGGAAAATACCAGTGATCTTCAGCCAGACCTGggtacagtcctcagtccactgctccccttgaagctagaaagtaattttgct Alignment from CESAR cATCAGGAGCCGCAAGGACTTGAAGGACATCTTTGACATCTACTCTGTACCCTGCAATCGGTCTGCCTCGGAGTCAGCCCCACTCTACACCAACCTG-ACAATCGAAGAAAATACCAGCGATCTTCAGCCTGACCTAg catatttttattccgacataaaggctacaaaatttttttttaaactctagcATTAGGAGCCGAAAGGACTTGAAGGACATCTTTGACATCTACACTGTG---------AGATCTACCTCAGAGTCCACCCCTCTCTATACCAACCTGGACAATTGAGGAAAATACCAGTGATCTTCAGCCAGACCTGggtacagtcctcagtccactgctccccttgaagctagaaagtaattttgct Alignment from Spaln_aa2Genome CATCAGGAGCCGCAAGGACTTGAAGGACATCTTTGACATCTACTCTGTACCCTGCAATCGGTCTGCCTCGGAGTCAGCCCCACTCTACACCAACCTG-ACAATCGAAGAAAATACCAGCGATCTTCA catatttttattccgacataaaggctacaaaatttttttttaaactctagCATTAGGAGCCGAAAGGACTTGAAGGACATCTTTGACATCTACACTGTG---------AGATCTACCTCAGAGTCCACCCCTCTCTATACCAACCTGgACAATTGAGGAAAATACCAGTGATCTTCAgccagacctgggtacagtcctcagtccactgctccccttgaagctagaaagtaattttgct Alignment from Spaln_nt2Genome CATCAGGAGCCGCAAGGACTTGAAGGACATCTTTGACATCTACTCTGTACCCTGCAATCGGTCTGCCTCGGAGTCAGCCCCACTCTACACCAACCTG-ACAATCGAAGAAAATACCAGCGATCTTCAGCCTGACCTAG catatttttattccgacataaaggctacaaaatttttttttaaactctagCATTAGGAGCCGAAAGGACTTGAAGGACATCTTTGACATCTACACTGT---------GAGATCTACCTCAGAGTCCACCCCTCTCTATACCAACCTGGACAATTGAGGAAAATACCAGTGATCTTCAGCCAGACCTGGgtacagtcctcagtccactgctccccttgaagctagaaagtaattttgct Alignment from Pairagon CATCAGGAGCCGCAAGGACTTGAAGGACATCTTTGACATCTACTCTGTACCCTGCAATCGGTCTGCCTCGGAGTCAGCCCCACTCTACACCAACCT-GACAATCGAAGAAAATACCAGCGATCTTCAGCCTGACCTAG catatttttattccgacataaaggctacaaaatttttttttaaactctagCATTAGGAGCCGAAAGGACTTGAAGGACATCTTTGACATCTACACTGTG---------AGATCTACCTCAGAGTCCACCCCTCTCTATACCAACCTGGACAATTGAGGAAAATACCAGTGATCTTCAGCCAGACCTGGgtacagtcctcagtccactgctccccttgaagctagaaagtaattttgct Alignment from Exonerate_protein2genome CATCAGGAGCCGCAAGGACTTGAAGGACATCTTTGACATCTACTCTGTACCCTGCAATCGGTCTGCCTCGGAGTCAGCCCCACTCTACACCAACCTG-ACAATCGAAGAAAATACCAGCGATCTTCAGCCTGACCTAG catatttttattccgacataaaggctacaaaatttttttttaaactctagCATTAGGAGCCGAAAGGACTTGAAGGACATCTTTGACATCTACACTGTG---------AGATCTACCTCAGAGTCCACCCCTCTCTATACCAACCTGGACAATTGAGGAAAATACCAGTGATCTTCAGCCAGACCTGGgtacagtcctcagtccactgctccccttgaagctagaaagtaattttgct Alignment from Exonerate_coding2genome CATCAGGAGCCGCAAGGACTTGAAGGACATCTTTGACATCTACTCTGTACCCTGCAATCGGTCTGCCTCGGAGTCAGCCCCACTCTACACCAACCTG-ACAATCGAAGAAAATACCAGCGATCTTCAGCCTGACCTAG catatttttattccgacataaaggctacaaaatttttttttaaactctagCATTAGGAGCCGAAAGGACTTGAAGGACATCTTTGACATCTACACTGTG---------AGATCTACCTCAGAGTCCACCCCTCTCTATACCAACCTGGACAATTGAGGAAAATACCAGTGATCTTCAGCCAGACCTGGgtacagtcctcagtccactgctccccttgaagctagaaagtaattttgct Alignment from GeneWise CATCAGGAGCCGCAAGGACTTGAAGGACATCTTTGACATCTACTCTGTACCCTGCAATCGGTCTGCCTCGGAGTCAGCCCCACTCTACACCAAC-CTGACAATCGAAGAAAATACCAGCGATCTTCAGCCTGACCTAG catatttttattccgacataaaggctacaaaatttttttttaaactctagCATTAGGAGCCGAAAGGACTTGAAGGACATCTTTGACATCTACACTGTG---------AGATCTACCTCAGAGTCCACCCCTCTCTATACCAACCTGGACAATTGAGGAAAATACCAGTGATCTTCAGCCAGACCTGGgtacagtcctcagtccactgctccccttgaagctagaaagtaattttgct #### Pnlip_ID12751_10 --> 2 - 2 Original Alignment gtTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTT-GGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCaa gtttatatgtactgataattgcccccattcttcctgtctgcccaatccaggtTGGTGGTACCAGATAACTGTCACCCTCTCTGGACAGAAGGTGACTGGGCATATCCTAGTT---TTGTTTCGGAAATGGACGTAACTCTAAGCAGTATCAAGTTTTCaagtaattaaaaataggaaacatcacacagctctttagatctctaagtgtgt Alignment from CESAR gtTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCaa gtttatatgtactgataattgcccccattcttcctgtctgcccaatccaggtTGGTGGTACCAGATAACTGTCACCCTCTCTGGACAGAAGGTGACTGGGCATATCCTAGTTTTG--TTTCGGAAATGGACGTAACTCTAAGCAGTATCAAGTTTTCaagtaattaaaaataggaaacatcacacagctctttagatctctaagtgtgt Alignment from Spaln_aa2Genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA gtttatatgtactgataattgcccccattcttcctgtctgcccaatccagGTTGGTGGTACCAGATAACTGTCACCCTCTCTGGACAGAAGGTGACTGGGCATATCCTAGTTTTGT--TTCGGAAATGGACGTAACTCTAAGCAGTATCAAGTTTTCAAgtaattaaaaataggaaacatcacacagctctttagatctctaagtgtgt Alignment from Spaln_nt2Genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTT-GGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA gtttatatgtactgataattgcccccattcttcctgtctgcccaatccagGTTGGTGGTACCAGATAACTGTCACCCTCTCTGGACAGAAGGTGACTGGGCATATCCTAGT---TTTGTTTCGGAAATGGACGTAACTCTAAGCAGTATCAAGTTTTCAAgtaattaaaaataggaaacatcacacagctctttagatctctaagtgtgt Alignment from Pairagon GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTT-GGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA gtttatatgtactgataattgcccccattcttcctgtctgcccaatccagGTTGGTGGTACCAGATAACTGTCACCCTCTCTGGACAGAAGGTGACTGGGCATATCCTAGT---TTTGTTTCGGAAATGGACGTAACTCTAAGCAGTATCAAGTTTTCAAgtaattaaaaataggaaacatcacacagctctttagatctctaagtgtgt Alignment from Exonerate_protein2genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTG-TTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAAG gtttatatgtactgataattgcccccattcttcctgtctgcccaatccagGTTGGTGGTACCAGATAACTGTCACCCTCTCTGGACAGAAGGTGACTGGGCATATCCTAGTT---TTGTTTCGGAAATGGACGTAACTCTAAGCAGTATCAAGTTTTCAAGtaattaaaaataggaaacatcacacagctctttagatctctaagtgtgt Alignment from Exonerate_coding2genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAAGGGCTCTCTGCAGCCAGGTACTTCTCACGT gtttatatgtactgataattgcccccattcttcctgtctgcccaatccagGTTGGTGGTACCAGATAACTGTCACCCTCTCTGGACAGAAGGTGACTGGGCATATCCTAGTT--TTGTTTCGGAAATGGACGTAACTCTAAGCAGTATCAAGTTTTCAAGTAATTAAAAATAGGAAACATCACACAGCTctttagatctctaagtgtgt Alignment from GeneWise GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTC-- gtttatatgtactgataattgcccccattcttcctgtctgcccaatccagGTTGGTGGTACCAGATAACTGTCACCCTCTCTGGACAGAAGGTGACTGGGCATATCCTAGTTT--TGTTTCGGAAATGGACGTAACTCTAAGCAGTATCAAGTTTTCAAgtaattaaaaataggaaacatcacacagctctttagatctctaagtgtgt #### Pnliprp1_ID12765_2 --> 2 - 0 Original Alignment ggAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCC-CTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG cccagtgattatggaccttcctgttcagtcttgacttcttgttcccgcagggAAAGAATTTTGTTACCACAACCTGGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCAATAGACCTCCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCTTGCTCTACACTAATGAGAACCCAATTGCTTTCCAGgtaagtcttcatgggccctagccaagaaccaggcgatcctaccacttgga Alignment from CESAR ggAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCC-CTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG cccagtgattatggaccttcctgttcagtcttgacttcttgttcccgcagggAAAGAATTTTGTTACCACAACCTGGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCAATAGACCTCCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCTTGCTCTACACTAATGAGAACCCAATTGCTTTCCAGgtaagtcttcatgggccctagccaagaaccaggcgatcctaccacttgga Alignment from Spaln_aa2Genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCC-CTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG cccagtgattatggaccttcctgttcagtcttgacttcttgttcccgcagGGAAAGAATTTTGTTACCACAACCTGGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCAATAGACCTcCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCTTGCTCTACACTAATGAGAACCCAATTGCTTTCCAGgtaagtcttcatgggccctagccaagaaccaggcgatcctaccacttgga Alignment from Spaln_nt2Genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCC-CCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG cccagtgattatggaccttcctgttcagtcttgacttcttgttcccgcagGGAAAGAATTTTGTTACCACAACCTGGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCAATAGACCTCCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCTTGCTCTACACTAATGAGAACCCAATTGCTTTCCAGgtaagtcttcatgggccctagccaagaaccaggcgatcctaccacttgga Alignment from Pairagon GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCC-CCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG cccagtgattatggaccttcctgttcagtcttgacttcttgttcccgcagGGAAAGAATTTTGTTACCACAACCTGGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCAATAGACCTCCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCTTGCTCTACACTAATGAGAACCCAATTGCTTTCCAGgtaagtcttcatgggccctagccaagaaccaggcgatcctaccacttgga Alignment from Exonerate_protein2genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCC-CTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG cccagtgattatggaccttcctgttcagtcttgacttcttgttcccgcagGGAAAGAATTTTGTTACCACAACCTGGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCAATAGACCTCCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCTTGCTCTACACTAATGAGAACCCAATTGCTTTCCAGgtaagtcttcatgggccctagccaagaaccaggcgatcctaccacttgga Alignment from Exonerate_coding2genome GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCC-CTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG cccagtgattatggaccttcctgttcagtcttgacttcttgttcccgcagGGAAAGAATTTTGTTACCACAACCTGGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCAATAGACCTCCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCTTGCTCTACACTAATGAGAACCCAATTGCTTTCCAGgtaagtcttcatgggccctagccaagaaccaggcgatcctaccacttgga Alignment from GeneWise GGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCC-CTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG cccagtgattatggaccttcctgttcagtcttgacttcttgttcccgcagGGAAAGAATTTTGTTACCACAACCTGGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCAATAGACCTCCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACTTGCTTCTTGCTCTACACTAATGAGAACCCAATTGCTTTCCAGgtaagtcttcatgggccctagccaagaaccaggcgatcctaccacttgga #### Pola2_ID1324_16 --> 1 - 2 Original Alignment cTCTTCCGGGACGTCAGACAGATTC-AGCCGAGTCCTTAAGCATATCCTGACGCAGAGAag gcactgatcagtaacctgtcttatccccgctttatcccatcctttcccagcTCCTTGGGGACACCAGATAGATTCCAGCAGAGTCCTTAAGCACATACTGACACAGAGGaggtaagtgatgtcctgtcaaccacaagaggaatggaccatatttactagca Alignment from CESAR cTCTTCCGGGACGTCAGACAGATTC-AGCCGAGTCCTTAAGCATATCCTGACGCAGAGAag gcactgatcagtaacctgtcttatccccgctttatcccatcctttcccagcTCCTTGGGGACACCAGATAGATTCCAGCAGAGTCCTTAAGCACATACTGACACAGAGGaggtaagtgatgtcctgtcaaccacaagaggaatggaccatatttactagca Alignment from Spaln_aa2Genome CTCTTCCGGGACGTCAGACAGATTC-AGCCGAGTCCTTAAGCATATCCTGACGCAGAGAAG gcactgatcagtaacctgtcttatccccgctttatcccatcctttcccagCTCCTTGGGGACACCAGATAGATTCcAGCAGAGTCCTTAAGCACATACTGACACAGAGGAGgtaagtgatgtcctgtcaaccacaagaggaatggaccatatttactagca Alignment from Spaln_nt2Genome CTCTTCCGGGACGTCAGACAGATTC-AGCCGAGTCCTTAAGCATATCCTGACGCAGAGAAG gcactgatcagtaacctgtcttatccccgctttatcccatcctttcccagCTCCTTGGGGACACCAGATAGATTCCAGCAGAGTCCTTAAGCACATACTGACACAGAGGAGgtaagtgatgtcctgtcaaccacaagaggaatggaccatatttactagca Alignment from Pairagon CTCTTCCGGGACGTCAGACAGATT-CAGCCGAGTCCTTAAGCATATCCTGACGCAGAGAAG gcactgatcagtaacctgtcttatccccgctttatcccatcctttcccagCTCCTTGGGGACACCAGATAGATTCCAGCAGAGTCCTTAAGCACATACTGACACAGAGGAGgtaagtgatgtcctgtcaaccacaagaggaatggaccatatttactagca Alignment from Exonerate_protein2genome CTCTTCCGGGACGTCAGACAGATTC-AGCCGAGTCCTTAAGCATATCCTGACGCAGAGAAG gcactgatcagtaacctgtcttatccccgctttatcccatcctttcccagCTCCTTGGGGACACCAGATAGATTCCAGCAGAGTCCTTAAGCACATACTGACACAGAGGAGgtaagtgatgtcctgtcaaccacaagaggaatggaccatatttactagca Alignment from Exonerate_coding2genome CTCTTCCGGGACGTCAGACAGATTC-AGCCGAGTCCTTAAGCATATCCTGACGCAGAGAAG gcactgatcagtaacctgtcttatccccgctttatcccatcctttcccagCTCCTTGGGGACACCAGATAGATTCCAGCAGAGTCCTTAAGCACATACTGACACAGAGGAGgtaagtgatgtcctgtcaaccacaagaggaatggaccatatttactagca Alignment from GeneWise gcactgatcagtaacctgtcttatccccgctttatcccatcctttcccagctccttggggacaccagatagattccagcagagtccttaagcacatactgacacagaggaggtaagtgatgtcctgtcaaccacaagaggaatggaccatatttactagca #### Pold4_ID437_2 --> 2 - 1 Original Alignment ggGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTG-CTGAGGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAg gtataaaggcttaggtggagcagggggatacggaggattctctattccagggGAAGACACACAGTCCCTCAGCCAAGAGGAGACTGAGCTGGAGCTGCCTACGGCAGTTTGACTTGACATGGCAGTATGGGCCTTGTACAggtaataatcccctgtaaccatccttgaatcagtctttcatgaagtacttt Alignment from CESAR ggGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTG-CTGAGGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAg gtataaaggcttaggtggagcagggggatacggaggattctctattccagggGAAGACACACAGTCCCTCAGCCAAGAGGAGACTGAGCTGGAGCTGCCTACGGCAGTTTGACTTGACATGGCAGTATGGGCCTTGTACAggtaataatcccctgtaaccatccttgaatcagtctttcatgaagtacttt Alignment from Spaln_aa2Genome GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTG-CTGAGGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAG gtataaaggcttaggtggagcagggggatacggaggattctctattccagGGGAAGACACACAGTCCCTCAGCCAAGAGGAGACTGAGCTGGAGCTGcCTACGGCAGTTTGACTTGACATGGCAGTATGGGCCTTGTACAGgtaataatcccctgtaaccatccttgaatcagtctttcatgaagtacttt Alignment from Spaln_nt2Genome GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTG-CTGAGGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAG gtataaaggcttaggtggagcagggggatacggaggattctctattccagGGGAAGACACACAGTCCCTCAGCCAAGAGGAGACTGAGCTGGAGCTGCCTACGGCAGTTTGACTTGACATGGCAGTATGGGCCTTGTACAGgtaataatcccctgtaaccatccttgaatcagtctttcatgaagtacttt Alignment from Pairagon GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGA-GGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAG gtataaaggcttaggtggagcagggggatacggaggattctctattccagGGGAAGACACACAGTCCCTCAGCCAAGAGGAGACTGAGCTGGAGCTGCCTACGGCAGTTTGACTTGACATGGCAGTATGGGCCTTGTACAGgtaataatcccctgtaaccatccttgaatcagtctttcatgaagtacttt Alignment from Exonerate_protein2genome GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTG-CTGAGGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAG gtataaaggcttaggtggagcagggggatacggaggattctctattccagGGGAAGACACACAGTCCCTCAGCCAAGAGGAGACTGAGCTGGAGCTGCCTACGGCAGTTTGACTTGACATGGCAGTATGGGCCTTGTACAGgtaataatcccctgtaaccatccttgaatcagtctttcatgaagtacttt Alignment from Exonerate_coding2genome GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTG-CTGAGGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAG gtataaaggcttaggtggagcagggggatacggaggattctctattccagGGGAAGACACACAGTCCCTCAGCCAAGAGGAGACTGAGCTGGAGCTGCCTACGGCAGTTTGACTTGACATGGCAGTATGGGCCTTGTACAGgtaataatcccctgtaaccatccttgaatcagtctttcatgaagtacttt Alignment from GeneWise GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTG-CTGAGGCAGTTTGACCTGGCCTGGCAGTATGGGCCTTGTACAG gtataaaggcttaggtggagcagggggatacggaggattctctattccagGGGAAGACACACAGTCCCTCAGCCAAGAGGAGACTGAGCTGGAGCTGCCTACGGCAGTTTGACTTGACATGGCAGTATGGGCCTTGTACAGgtaataatcccctgtaaccatccttgaatcagtctttcatgaagtacttt #### Pold4_ID438_3 --> 2 - 2 Original Alignment gtATCACAAGG---CTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTAC-CAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCag catgccactaccaccccctgcttgtcacaaatccttgtcttgtctatcaggtATCACAAGGTTGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTATCCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCGGTGCacgtgagtacagacccagagagcttcctcctgcctatgtgggagctcacctg Alignment from CESAR gtATCACAAGG---CTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTAC-CAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCag catgccactaccaccccctgcttgtcacaaatccttgtcttgtctatcaggtATCACAAGGTTGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTATCCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCGGTGCacgtgagtacagacccagagagcttcctcctgcctatgtgggagctcacctg Alignment from Spaln_aa2Genome GTATCACAAGG---CTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTACCAA-GTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG catgccactaccaccccctgcttgtcacaaatccttgtcttgtctatcagGTATCACAAGGTTGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTATCCCaGTGTTGAAGGCACACCCTGAAGACCCTCACTACCGGTGCACgtgagtacagacccagagagcttcctcctgcctatgtgggagctcacctg Alignment from Spaln_nt2Genome GTATCACAAGG---CTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTA-CCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG catgccactaccaccccctgcttgtcacaaatccttgtcttgtctatcagGTATCACAAGGTTGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTATCCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCGGTGCACgtgagtacagacccagagagcttcctcctgcctatgtgggagctcacctg Alignment from Pairagon GTATCACAAG---GCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTA-CCAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG catgccactaccaccccctgcttgtcacaaatccttgtcttgtctatcagGTATCACAAGGTTGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTATCCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCGGTGCACgtgagtacagacccagagagcttcctcctgcctatgtgggagctcacctg Alignment from Exonerate_protein2genome GTATCACAAGG---CTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTAC-CAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAG catgccactaccaccccctgcttgtcacaaatccttgtcttgtctatcagGTATCACAAGGTTGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTATCCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCGGTGCACgtgagtacagacccagagagcttcctcctgcctatgtgggagctcacctg Alignment from Exonerate_coding2genome GTATCACAAGG---CTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTAC-CAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAGC catgccactaccaccccctgcttgtcacaaatccttgtcttgtctatcagGTATCACAAGGTTGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTATCCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCGGTGCACGtgagtacagacccagagagcttcctcctgcctatgtgggagctcacctg Alignment from GeneWise GTATCACAAGGCTG---CAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTAC-CAAGTGTTGAAGGCACACCCTGAAGACCCTCACTTCCAATGCAGC catgccactaccaccccctgcttgtcacaaatccttgtcttgtctatcagGTATCACAAGGTTGCTGCAGCGCTGGAGTCGGGCAGAGCAGATGGGCTTGAAGCCCCCCCTAGAGGTGTATCCCAGTGTTGAAGGCACACCCTGAAGACCCTCACTACCGGTGCACGtgagtacagacccagagagcttcctcctgcctatgtgggagctcacctg #### Polr2g_ID2377_6 --> 0 - 0 Original Alignment GACATTGTGATTCAGCAG----GACGATGAGATACGCTTGAAGATTGTAGGCACGCGTGTAGACAAGAATGACATT ctgataagaagcctgagtctggctgacctcattgctcttttcctttgtagGGCATATTGATTCAGCTGGATCGAG------ATACGGCTAAAGATTGTAGGGACACATGTAGATAAAAACGATGTTgtacgtctaggtaggcttttgttctttgtctatatgacagcacagatccg Alignment from CESAR GACATTGTGATTCAGCAGGACGATGAGATACGCTTGAAGATTGTAGGCACGCGTGTAGACAAGAATGACATT ctgataagaagcctgagtctggctgacctcattgctcttttcctttgtagGGCATATTGATTCAGCTGGAT--CGAGATACGGCTAAAGATTGTAGGGACACATGTAGATAAAAACGATGTTgtacgtctaggtaggcttttgttctttgtctatatgacagcacagatccg Alignment from Spaln_aa2Genome GACATTGTGATTCAGCAGGACGATGAGATACGCTTGAAGATTGTAGGCACGCGTGTAGACAAGAATGACATT ctgataagaagcctgagtctggctgacctcattgctcttttcctttgtagGGCATATTGATTCAGCTGGATC--GAGATACGGCTAAAGATTGTAGGGACACATGTAGATAAAAACGATGTTgtacgtctaggtaggcttttgttctttgtctatatgacagcacagatccg Alignment from Spaln_nt2Genome GACATTGTGATTCAGCAGGACGATGAGATACGCTTGAAGATTGTAGGCACGCGTGTAGACAAGAATGACATT ctgataagaagcctgagtctggctgacctcattgctcttttcctttgtagGGCATATTGATTCAGCTGGA--TCGAGATACGGCTAAAGATTGTAGGGACACATGTAGATAAAAACGATGTTgtacgtctaggtaggcttttgttctttgtctatatgacagcacagatccg Alignment from Pairagon GACATTGTGATTCAGCAGGACGATGAGATACGCTTGAAGATTGTAGGCACGCGTGTAGACAAGAATGACATT ctgataagaagcctgagtctggctgacctcattgctcttttcctttgtagGGCATATTGATTCAGCTGGAT--CGAGATACGGCTAAAGATTGTAGGGACACATGTAGATAAAAACGATGTTgtacgtctaggtaggcttttgttctttgtctatatgacagcacagatccg Alignment from Exonerate_protein2genome GACATTGTGATTCAGCAGGAC-GATGAGATACGCTTGAAGATTGTAGGCACGCGTGTAGACAAGAATGACATT ctgataagaagcctgagtctggctgacctcattgctcttttcctttgtagGGCATATTGATTCAGCTGGATC---GAGATACGGCTAAAGATTGTAGGGACACATGTAGATAAAAACGATGTTgtacgtctaggtaggcttttgttctttgtctatatgacagcacagatccg Alignment from Exonerate_coding2genome ctgataagaagcctgagtctggctgacctcattgctcttttcctttgtagggcatattgattcagctggatcgagatacggctaaagattgtagggacacatgtagataaaaacgatgttgtacgtctaggtaggcttttgttctttgtctatatgacagcacagatccg Alignment from GeneWise ctgataagaagcctgagtctggctgacctcattgctcttttcctttgtagggcatattgattcagctggatcgagatacggctaaagattgtagggacacatgtagataaaaacgatgttgtacgtctaggtaggcttttgttctttgtctatatgacagcacagatccg #### Polr2g_ID2378_5 --> 0 - 0 Original Alignment TCCATCCCTTCAGAGATGGAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAG-ACCATGGACGAG gactaaagttccttgttcctggaagtcaatgggtcggggctctgttgcagTCCATACCCTCAGAAATGGAGTTTGACCCAAATTCAAACCCCCCCTGTTATAAGCACCATGGATGAAgtaagtgagcatggagtagagggagagatgaagggtgaggaaagcaaaac Alignment from CESAR TCCATCCCTTCAGAGATGGAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAG-ACCATGGACGAG acctaaagttccttgttcctggaagtcaatgggtcggggctctgttgcagTCCATACCCTCAGAAATGGAGTTTGACCCAAATTCAAACCCCCCCTGTTATAAGCACCATGGATGAAgtaagtgagcatggagtagagggagagatgaagggtgaggaaagcaaaac Alignment from Spaln_aa2Genome TCCATCCCTTCAGAGATGGAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAG-ACCATGGACGAG gactaaagttccttgttcctggaagtcaatgggtcggggctctgttgcagTCCATACCCTCAGAAATGGAGTTTGACCCAAATTCAAACCCCCCCTGTTATAAGcACCATGGATGAAgtaagtgagcatggagtagagggagagatgaagggtgaggaaagcaaaac Alignment from Spaln_nt2Genome TCCATCCCTTCAGAGATGGAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAG-ACCATGGACGAG gactaaagttccttgttcctggaagtcaatgggtcggggctctgttgcagTCCATACCCTCAGAAATGGAGTTTGACCCAAATTCAAACCCCCCCTGTTATAAGCACCATGGATGAAgtaagtgagcatggagtagagggagagatgaagggtgaggaaagcaaaac Alignment from Pairagon TCCATCCCTTCAGAGATGGAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAG-ACCATGGACGAG gactaaagttccttgttcctggaagtcaatgggtcggggctctgttgcagTCCATACCCTCAGAAATGGAGTTTGACCCAAATTCAAACCCCCCCTGTTATAAGCACCATGGATGAAgtaagtgagcatggagtagagggagagatgaagggtgaggaaagcaaaac Alignment from Exonerate_protein2genome TCCATCCCTTCAGAGATGGAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAG-ACCATGGACGAG gactaaagttccttgttcctggaagtcaatgggtcggggctctgttgcagTCCATACCCTCAGAAATGGAGTTTGACCCAAATTCAAACCCCCCCTGTTATAAGCACCATGGATGAAgtaagtgagcatggagtagagggagagatgaagggtgaggaaagcaaaac Alignment from Exonerate_coding2genome TCCATCCCTTCAGAGATGGAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAG gactaaagttccttgttcctggaagtcaatgggtcggggctctgttgcagTCCATACCCTCAGAAATGGAGTTTGACCCAAATTCAAACCCCCCCTGTTATAAGcaccatggatgaagtaagtgagcatggagtagagggagagatgaagggtgaggaaagcaaaac Alignment from GeneWise --------------------------------------------------TCCATCCCTTCAGAGATGGAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAG GACTAAAGTTCCTTGTTCCTGGAAGTCAATGGGTCGGGGCTCTGTTGCAGTCCATACCCTCAGAAATGGAGTTTGACCCAAATTCAAACCCCCCCTGTTATAAGcaccatggatgaagtaagtgagcatggagtagagggagagatgaagggtgaggaaagcaaaac #### Polr2g_ID2381_2 --> 0 - 2 Original Alignment ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGA-TACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGaa tcctgtccctcgtgcacctggttaatgtcctctttctttttccttttaagATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGACTACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCCATTTACTGAAGTGGAGGGGACCTGCACTGGGaagtaagactcctctttacagcaggttctgttgaatgcatcaataatgacac Alignment from CESAR ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGA-TACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGaa tcctgtccctcgtgcacctggttaatgtcctctttctttttccttttaagATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGACTACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCCATTTACTGAAGTGGAGGGGACCTGCACTGGGaagtaagactcctctttacagcaggttctgttgaatgcatcaataatgacac Alignment from Spaln_aa2Genome ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGA-TACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgtccctcgtgcacctggttaatgtcctctttctttttccttttaagATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGAcTACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCCATTTACTGAAGTGGAGGGGACCTGCACTGGGAAgtaagactcctctttacagcaggttctgttgaatgcatcaataatgacac Alignment from Spaln_nt2Genome ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGA-TACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgtccctcgtgcacctggttaatgtcctctttctttttccttttaagATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGACTACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCCATTTACTGAAGTGGAGGGGACCTGCACTGGGAAgtaagactcctctttacagcaggttctgttgaatgcatcaataatgacac Alignment from Pairagon ATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGA-TACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgtccctcgtgcacctggttaatgtcctctttctttttccttttaagATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGACTACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCCATTTACTGAAGTGGAGGGGACCTGCACTGGGAAgtaagactcctctttacagcaggttctgttgaatgcatcaataatgacac Alignment from Exonerate_protein2genome TATCACATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGA-TACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgtccctcgtgcacctggttaatgtcctctttctttttcctTTTAAGATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGACTACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCCATTTACTGAAGTGGAGGGGACCTGCACTGGGAAgtaagactcctctttacagcaggttctgttgaatgcatcaataatgacac Alignment from Exonerate_coding2genome TATCACATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGA-TACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tcctgtccctcgtgcacctggttaatgtcctctttctttttcctTTTAAGATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGACTACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCCATTTACTGAAGTGGAGGGGACCTGCACTGGGAAgtaagactcctctttacagcaggttctgttgaatgcatcaataatgacac Alignment from GeneWise TTTTATCACATTTCCCTGGAGCACGAGATCCTCCTGCACCCA-CGATACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCTGTTTACCGAGGTGGAGGGGACCTGCACTGGGAA tgtccctcgtgcacctggttaatgtcctctttctttttcct---TTTAAGATTTCCCTGGAGCACGAGATCCTCCTGCACCCACGACTACTTCGGTCCAAACTTGCTCAACACGGTGAAGCAGAAGCCATTTACTGAAGTGGAGGGGACCTGCACTGGGAAgtaagactcctctttacagcaggttctgttgaatgcatcaataatgacac #### Ppp1ca_ID409_3 --> 2 - 1 Original Alignment gtGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTG-CTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATC---AACCGCATTTATGGCTTCTATGATGAAt catccaatttacttaatatacttccttattgagactccttctgcttccaggtGACATCCAGGGACAGTACTATGACCTTCTGCACCTGTTTGAATATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGGGCGATTATTTAGACCGTGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCCTGACCTATAAGATCAGATACTTAGAGAATTTCTATGTACTTCGTGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTTTATGATGCAtgtgcgcgattggaaccctgacatcttactggctcatttaacattgcctct Alignment from CESAR gtGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTG-CTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGC---ATCAACCGCATTTATGGCTTCTATGATGAAt catccaatttacttaatatacttccttattgagactccttctgcttccaggtGACATCCAGGGACAGTACTATGACCTTCTGCACCTGTTTGAATATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGGGCGATTATTTAGACCGTGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCCTGACCTATAAGATCAGATACTTAGAGAATTTCTATGTACTTCGTGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTTTATGATGCAtgtgcgcgattggaaccctgacatcttactggctcatttaacattgcctct Alignment from Spaln_aa2Genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTG-CTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGC---ATCAACCGCATTTATGGCTTCTATGATGAAT catccaatttacttaatatacttccttattgagactccttctgcttccagGTGACATCCAGGGACAGTACTATGACCTTCTGCACCTGTTTGAATATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGGGCGATTATTTAGACCGTGGCAAGCAATCCTTGGAGACCATCTGCCTATTGcCTGACCTATAAGATCAGATACTTAGAGAATTTCTATGTACTTCGTGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTTTATGATGCATgtgcgcgattggaaccctgacatcttactggctcatttaacattgcctct Alignment from Spaln_nt2Genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTG-CTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGC---ATCAACCGCATTTATGGCTTCTATGATGAAT catccaatttacttaatatacttccttattgagactccttctgcttccagGTGACATCCAGGGACAGTACTATGACCTTCTGCACCTGTTTGAATATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGGGCGATTATTTAGACCGTGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCCTGACCTATAAGATCAGATACTTAGAGAATTTCTATGTACTTCGTGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTTTATGATGCATgtgcgcgattggaaccctgacatcttactggctcatttaacattgcctct Alignment from Pairagon GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTG-CTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGC---ATCAACCGCATTTATGGCTTCTATGATGAAT catccaatttacttaatatacttccttattgagactccttctgcttccagGTGACATCCAGGGACAGTACTATGACCTTCTGCACCTGTTTGAATATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGGGCGATTATTTAGACCGTGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCCTGACCTATAAGATCAGATACTTAGAGAATTTCTATGTACTTCGTGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTTTATGATGCATgtgcgcgattggaaccctgacatcttactggctcatttaacattgcctct Alignment from Exonerate_protein2genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTG-CTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGC---ATCAACCGCATTTATGGCTTCTATGATGAAT catccaatttacttaatatacttccttattgagactccttctgcttccagGTGACATCCAGGGACAGTACTATGACCTTCTGCACCTGTTTGAATATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGGGCGATTATTTAGACCGTGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCCTGACCTATAAGATCAGATACTTAGAGAATTTCTATGTACTTCGTGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTTTATGATGCATgtgcgcgattggaaccctgacatcttactggctcatttaacattgcctct Alignment from Exonerate_coding2genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTG-CTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGC---ATCAACCGCATTTATGGCTTCTATGATGAAT catccaatttacttaatatacttccttattgagactccttctgcttccagGTGACATCCAGGGACAGTACTATGACCTTCTGCACCTGTTTGAATATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGGGCGATTATTTAGACCGTGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCCTGACCTATAAGATCAGATACTTAGAGAATTTCTATGTACTTCGTGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTTTATGATGCATgtgcgcgattggaaccctgacatcttactggctcatttaacattgcctct Alignment from GeneWise GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTG-CTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATC---AACCGCATTTATGGCTTCTATGATGAAT catccaatttacttaatatacttccttattgagactccttctgcttccagGTGACATCCAGGGACAGTACTATGACCTTCTGCACCTGTTTGAATATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGGGCGATTATTTAGACCGTGGCAAGCAATCCTTGGAGACCATCTGCCTATTGCCTGACCTATAAGATCAGATACTTAGAGAATTTCTATGTACTTCGTGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTTTATGATGCATgtgcgcgattggaaccctgacatcttactggctcatttaacattgcctct #### Pprc1_ID9723_11 --> 1 - 0 Original Alignment gTACAGCTCTTACCGTGCAAAT-GACCATTACCAAAGGCAGAGAGTGCTACAGAAGGAGCGTGCAATA agactctcatgcctgacttgtttgcagcttttttatgtgtttcgtcttaggTACAGCTCTTACCATGCAAATCGACCACTACCATAGACAGAGAGTACTACAGAAGGAATGTGCCATTgtaggatggtggtatgctagaagggggggcagcaaatgtcgcacgacctt Alignment from CESAR gTACAGCTCTTACCGTGCAAAT-GACCATTACCAAAGGCAGAGAGTGCTACAGAAGGAGCGTGCAATA agactctcatgcctgacttgtttgcagcttttttatgtgtttcgtcttaggTACAGCTCTTACCATGCAAATCGACCACTACCATAGACAGAGAGTACTACAGAAGGAATGTGCCATTgtaggatggtggtatgctagaagggggggcagcaaatgtcgcacgacctt Alignment from Spaln_aa2Genome GTACAGCTCTTACCGTGCAAAT-GACCATTACCAAAGGCAGAGAGTGCTACAGAAGGAGCGTGCAATA agactctcatgcctgacttgtttgcagcttttttatgtgtttcgtcttagGTACAGCTCTTACCATGCAAATcGACCACTACCATAGACAGAGAGTACTACAGAAGGAATGTGCCATTgtaggatggtggtatgctagaagggggggcagcaaatgtcgcacgacctt Alignment from Spaln_nt2Genome GTACAGCTCTTACCGTGCAAAT-GACCATTACCAAAGGCAGAGAGTGCTACAGAAGGAGCGTGCAATA agactctcatgcctgacttgtttgcagcttttttatgtgtttcgtcttagGTACAGCTCTTACCATGCAAATCGACCACTACCATAGACAGAGAGTACTACAGAAGGAATGTGCCATTgtaggatggtggtatgctagaagggggggcagcaaatgtcgcacgacctt Alignment from Pairagon GTACAGCTCTTACCGTGCAAAT-GACCATTACCAAAGGCAGAGAGTGCTACAGAAGGAGCGTGCAATA agactctcatgcctgacttgtttgcagcttttttatgtgtttcgtcttagGTACAGCTCTTACCATGCAAATCGACCACTACCATAGACAGAGAGTACTACAGAAGGAATGTGCCATTgtaggatggtggtatgctagaagggggggcagcaaatgtcgcacgacctt Alignment from Exonerate_protein2genome GTACAGCTCTTACCGTGCAAAT-GACCATTACCAAAGGCAGAGAGTGCTACAGAAGGAGCGTGCAATA agactctcatgcctgacttgtttgcagcttttttatgtgtttcgtcttagGTACAGCTCTTACCATGCAAATCGACCACTACCATAGACAGAGAGTACTACAGAAGGAATGTGCCATTgtaggatggtggtatgctagaagggggggcagcaaatgtcgcacgacctt Alignment from Exonerate_coding2genome agactctcatgcctgacttgtttgcagcttttttatgtgtttcgtcttaggtacagctcttaccatgcaaatcgaccactaccatagacagagagtactacagaaggaatgtgccattgtaggatggtggtatgctagaagggggggcagcaaatgtcgcacgacctt Alignment from GeneWise GTACAGCTCTTACCGTGCA-AATGACCATTACCAAAGGCAGAGAGTGCTACAGAAGGAGCGTGCAATA agactctcatgcctgacttgtttgcagcttttttatgtgtttcgtcttagGTACAGCTCTTACCATGCAAATCGACCACTACCATAGACAGAGAGTACTACAGAAGGAATGTGCCATTgtaggatggtggtatgctagaagggggggcagcaaatgtcgcacgacctt #### Pprc1_ID9724_12 --> 0 - 2 Original Alignment GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCGGAGCTGAAACAGAGGTTCTCTGTTTTT-GGAGAAATTGAGGAGTGTACCATTCATTTTCGTGTCCAAgg tcaacagctgtcaatgcagtgtgaagtctgtcctgtattccccacattagGAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGGATGACTCGGTCAGAGCTTAAACAGAGGTTCTCTGTTTTTCGGAGAAATTGAGGAGTGTACCATCCACTTTAGGGTGCAAgggtaagtcataacgataggttcttgttctctttgttatcttttcctgttga Alignment from CESAR GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCGGAGCTGAAACAGAGGTTCTCTGTTTTT-GGAGAAATTGAGGAGTGTACCATTCATTTTCGTGTCCAAgg tcaacagctgtcaatgcagtgtgaagtctgtcctgtattccccacattagGAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGGATGACTCGGTCAGAGCTTAAACAGAGGTTCTCTGTTTTTCGGAGAAATTGAGGAGTGTACCATCCACTTTAGGGTGCAAgggtaagtcataacgataggttcttgttctctttgttatcttttcctgttga Alignment from Spaln_aa2Genome GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCGGAGCTGAAACAGAGGTTCTCTGTT-TTTGGAGAAATTGAGGAGTGTACCATTCATTTTCGTGTCCAAGG tcaacagctgtcaatgcagtgtgaagtctgtcctgtattccccacattagGAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGGATGACTCGGTCAGAGCTTAAACAGAGGTTCTCTGTTtTTCGGAGAAATTGAGGAGTGTACCATCCACTTTAGGGTGCAAGGgtaagtcataacgataggttcttgttctctttgttatcttttcctgttga Alignment from Spaln_nt2Genome GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCGGAGCTGAAACAGAGGTTCTCTG-TTTTTGGAGAAATTGAGGAGTGTACCATTCATTTTCGTGTCCAAGG tcaacagctgtcaatgcagtgtgaagtctgtcctgtattccccacattagGAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGGATGACTCGGTCAGAGCTTAAACAGAGGTTCTCTGTTTTTCGGAGAAATTGAGGAGTGTACCATCCACTTTAGGGTGCAAGGgtaagtcataacgataggttcttgttctctttgttatcttttcctgttga Alignment from Pairagon GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCGGAGCTGAAACAGAGGTTCTCTGTTTTT-GGAGAAATTGAGGAGTGTACCATTCATTTTCGTGTCCAAGG tcaacagctgtcaatgcagtgtgaagtctgtcctgtattccccacattagGAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGGATGACTCGGTCAGAGCTTAAACAGAGGTTCTCTGTTTTTCGGAGAAATTGAGGAGTGTACCATCCACTTTAGGGTGCAAGGgtaagtcataacgataggttcttgttctctttgttatcttttcctgttga Alignment from Exonerate_protein2genome GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCGGAGCTGAAACAGAGGTTCTCTGTT-TTTGGAGAAATTGAGGAGTGTACCATTCATTTTCGTGTCCAAGG tcaacagctgtcaatgcagtgtgaagtctgtcctgtattccccacattagGAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGGATGACTCGGTCAGAGCTTAAACAGAGGTTCTCTGTTTTTCGGAGAAATTGAGGAGTGTACCATCCACTTTAGGGTGCAAGGgtaagtcataacgataggttcttgttctctttgttatcttttcctgttga Alignment from Exonerate_coding2genome GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCGGAGCTGAAACAGAGGTTCTCTGTT-TTTGGAGAAATTGAGGAGTGTACCATTCATTTTCGTGTCCAAGG tcaacagctgtcaatgcagtgtgaagtctgtcctgtattccccacattagGAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGGATGACTCGGTCAGAGCTTAAACAGAGGTTCTCTGTTTTTCGGAGAAATTGAGGAGTGTACCATCCACTTTAGGGTGCAAGGgtaagtcataacgataggttcttgttctctttgttatcttttcctgttga Alignment from GeneWise GAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCGGAGCTGAAACAGAGGTTCTCT-GTTTTTGGAGAAATTGAGGAGTGTACCATTCATTTTCGTGTCCAAGG tcaacagctgtcaatgcagtgtgaagtctgtcctgtattccccacattagGAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGGATGACTCGGTCAGAGCTTAAACAGAGGTTCTCTGTTTTTCGGAGAAATTGAGGAGTGTACCATCCACTTTAGGGTGCAAGGgtaagtcataacgataggttcttgttctctttgttatcttttcctgttga #### Prdx5_ID1853_4 --> 0 - 0 Original Alignment GTTCGGCTCCTGGCTGAC-CCCACTGGAGCCTTTGGGAAG ctgagagtcagcacctccactcaccaagagtggccatgcctttccttcagGTTCGGCTCCTGGCTGACCCCCACTGGAGCCTTTGGGAAGgtaagtgtaccttgccatgcgatcagtctttggggaaccatatacagggg Alignment from CESAR GTTCGGCTCCTGGCTGAC-CCCACTGGAGCCTTTGGGAAG ctgagagtcagcacctccactcaccaagagtggccatgcctttccttcagGTTCGGCTCCTGGCTGACCCCCACTGGAGCCTTTGGGAAGgtaagtgtaccttgccatgcgatcagtctttggggaaccatatacagggg Alignment from Spaln_aa2Genome GTTCGGCTCCTGGCTGAC-CCCACTGGAGCCTTTGGGAAG ctgagagtcagcacctccactcaccaagagtggccatgcctttccttcagGTTCGGCTCCTGGCTGACcCCCACTGGAGCCTTTGGGAAGgtaagtgtaccttgccatgcgatcagtctttggggaaccatatacagggg Alignment from Spaln_nt2Genome GTTCGGCTCCTGGCTGA-CCCCACTGGAGCCTTTGGGAAG ctgagagtcagcacctccactcaccaagagtggccatgcctttccttcagGTTCGGCTCCTGGCTGACCCCCACTGGAGCCTTTGGGAAGgtaagtgtaccttgccatgcgatcagtctttggggaaccatatacagggg Alignment from Pairagon GTTCGGCTCCTGGCTGA-CCCCACTGGAGCCTTTGGGAAG ctgagagtcagcacctccactcaccaagagtggccatgcctttccttcagGTTCGGCTCCTGGCTGACCCCCACTGGAGCCTTTGGGAAGgtaagtgtaccttgccatgcgatcagtctttggggaaccatatacagggg Alignment from Exonerate_protein2genome GTTCGGCTCCTGGCTGAC-CCCACTGGAGCCTTTGGGAAG ctgagagtcagcacctccactcaccaagagtggccatgcctttccttcagGTTCGGCTCCTGGCTGACCCCCACTGGAGCCTTTGGGAAGgtaagtgtaccttgccatgcgatcagtctttggggaaccatatacagggg Alignment from Exonerate_coding2genome GTTCGGCTCCTGGCTGAC-CCCACTGGAGCCTTTGGGAAG ctgagagtcagcacctccactcaccaagagtggccatgcctttccttcagGTTCGGCTCCTGGCTGACCCCCACTGGAGCCTTTGGGAAGgtaagtgtaccttgccatgcgatcagtctttggggaaccatatacagggg Alignment from GeneWise ctgagagtcagcacctccactcaccaagagtggccatgcctttccttcaggttcggctcctggctgacccccactggagcctttgggaaggtaagtgtaccttgccatgcgatcagtctttggggaaccatatacagggg #### Prpf19_ID3043_2 --> 2 - 1 Original Alignment tcTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATC-AACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAg gatatagcttttctgcggtatactccctatgtgctgtgtctgttaattagtcTCCAATGAAGTGCCAGAGCACCCATGCGTGTCGCCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGATATTAAAggtgagtgcctgctgcagcttcacagcatgccactcagcctccaagccaat Alignment from CESAR tcTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATC-AACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAg gatatagcttttctgcggtatactccctatgtgctgtgtctgttaattagtcTCCAATGAAGTGCCAGAGCACCCATGCGTGTCGCCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGATATTAAAggtgagtgcctgctgcagcttcacagcatgccactcagcctccaagccaat Alignment from Spaln_aa2Genome TCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATC-AACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatagcttttctgcggtatactccctatgtgctgtgtctgttaattagTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCGCCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCcAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGATATTAAAGgtgagtgcctgctgcagcttcacagcatgccactcagcctccaagccaat Alignment from Spaln_nt2Genome TCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTAT-CAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatagcttttctgcggtatactccctatgtgctgtgtctgttaattagTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCGCCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGATATTAAAGgtgagtgcctgctgcagcttcacagcatgccactcagcctccaagccaat Alignment from Pairagon TCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTAT-CAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatagcttttctgcggtatactccctatgtgctgtgtctgttaattagTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCGCCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGATATTAAAGgtgagtgcctgctgcagcttcacagcatgccactcagcctccaagccaat Alignment from Exonerate_protein2genome ATCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATC-AACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatagcttttctgcggtatactccctatgtgctgtgtctgttaattaGTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCGCCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGATATTAAAGgtgagtgcctgctgcagcttcacagcatgccactcagcctccaagccaat Alignment from Exonerate_coding2genome ATCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATC-AACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG gatatagcttttctgcggtatactccctatgtgctgtgtctgttaattaGTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCGCCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGATATTAAAGgtgagtgcctgctgcagcttcacagcatgccactcagcctccaagccaat Alignment from GeneWise TCCCTGATCTGCTCGATCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCT-ATCAACAACCAGCCTCTCTCAGAGGAGCAGCTCATCGACATCAAAG cggtatactccctatgtgctgtgtctgttaatta---------------GTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCGCCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCCAACAACCAGCCTCTCTCAGAGGGGCAGCTCATTGATATTAAAGgtgagtgcctgctgcagcttcacagcatgccactcagcctccaagccaat #### Prpf19_ID3045_4 --> 0 - 1 Original Alignment CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACC-AAAGAGGTCACTGCTGCTCGAGAAg CCTTGCAAGATGAGTGGgtaggtccaattttgcttttggttgctgtgcagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCCAAAGAGGTCACTGCTGCTCGAGAAggtatgtcacatttcattgtagagtccctatcctctctttctgcttcccgc Alignment from CESAR CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACC-AAAGAGGTCACTGCTGCTCGAGAAg CCTTGCAAGATGAGTGGgtaaggccaattttgcttttggttgctgtgcagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCCAAAGAGGTCACTGCTGCTCGAGAAggtatgtcacatttcattgtagagtccctatatcctcctcccgctttcccc Alignment from Spaln_aa2Genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACC-AAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtaggtccaattttgcttttggttgctgtgcagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCcAAAGAGGTCACTGCTGCTCGAGAAGgtatgtcacatttcattgtagagtccctatcctctctttctgcttcccgc Alignment from Spaln_nt2Genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCA-CCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtaggtccaattttgcttttggttgctgtgcagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCCAAAGAGGTCACTGCTGCTCGAGAAGgtatgtcacatttcattgtagagtccctatcctctctttctgcttcccgc Alignment from Pairagon CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCA-CCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtaggtccaattttgcttttggttgctgtgcagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCCAAAGAGGTCACTGCTGCTCGAGAAGgtatgtcacatttcattgtagagtccctatcctctctttctgcttcccgc Alignment from Exonerate_protein2genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACC-AAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtaggtccaattttgcttttggttgctgtgcagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCCAAAGAGGTCACTGCTGCTCGAGAAGgtatgtcacatttcattgtagagtccctatcctctctttctgcttcccgc Alignment from Exonerate_coding2genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACC-AAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtaggtccaattttgcttttggttgctgtgcagGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCCAAAGAGGTCACTGCTGCTCGAGAAGgtatgtcacatttcattgtagagtccctatcctctctttctgcttcccgc Alignment from GeneWise CCTTGCAGGATGAGTGG---------------------------------GATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACC-AAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGGTAGGTCCAATTTTGCTTTTGGTTGCTGTGCAGGATGCAGTCATGCTGCACAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCCAAAGAGGTCACTGCTGCTCGAGAAGgtatgtcacatttcattgtagagtccctatcctctctttctgcttcccgc #### Prpf19_ID3046_5 --> 2 - 0 Original Alignment ctCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAG-GCTGTGCCAAGCTCACAGCCCAGTGTTGTG aaagcacatttcattgtagagtccctatatcctcctcccgctttccccagccCTGGCCACCCTAAAACCACAAGCTGGCCTTATCGTACCTCAACGCTGTGCCAAGCTCACCACCCAGTGTAGTGgtgagttttgcaccctcagcaccccactagcaaatgacacttcacgagag Alignment from CESAR ctCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAG-GCTGTGCCAAGCTCACAGCCCAGTGTTGTG atgtcacatttcattgtagagtccctatatcctcctcccgctttccccagccCTGGCCACCCTAAAACCACAAGCTGGCCTTATCGTACCTCAACGCTGTGCCAAGCTCACCACCCAGTGTAGTGgtgagttttgcaccctcagcaccccactagcaaatgacacttcacgagag Alignment from Spaln_aa2Genome CTCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAG-GCTGTGCCAAGCTCACAGCCCAGTGTTGTG aaagcacatttcattgtagagtccctatatcctcctcccgctttccccagCCCTGGCCACCCTAAAACCACAAGCTGGCCTTATCGTACCTCAAcGCTGTGCCAAGCTCACCACCCAGTGTAGTGgtgagttttgcaccctcagcaccccactagcaaatgacacttcacgagag Alignment from Spaln_nt2Genome CTCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAG-GCTGTGCCAAGCTCACAGCCCAGTGTTGTG aaagcacatttcattgtagagtccctatatcctcctcccgctttccccagCCCTGGCCACCCTAAAACCACAAGCTGGCCTTATCGTACCTCAACGCTGTGCCAAGCTCACCACCCAGTGTAGTGgtgagttttgcaccctcagcaccccactagcaaatgacacttcacgagag Alignment from Pairagon CTCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAG-GCTGTGCCAAGCTCACAGCCCAGTGTTGTG aaagcacatttcattgtagagtccctatatcctcctcccgctttccccagCCCTGGCCACCCTAAAACCACAAGCTGGCCTTATCGTACCTCAACGCTGTGCCAAGCTCACCACCCAGTGTAGTGgtgagttttgcaccctcagcaccccactagcaaatgacacttcacgagag Alignment from Exonerate_protein2genome CTCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAG-GCTGTGCCAAGCTCACAGCCCAGTGTTGTG aaagcacatttcattgtagagtccctatatcctcctcccgctttccccagCCCTGGCCACCCTAAAACCACAAGCTGGCCTTATCGTACCTCAACGCTGTGCCAAGCTCACCACCCAGTGTAGTGgtgagttttgcaccctcagcaccccactagcaaatgacacttcacgagag Alignment from Exonerate_coding2genome GCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAGGCTGTGCCAAGCTCACAGCCCAGTGTTGTG GCACATTTCATTGTAGAGTCC---CTATATCCTCCTCCCGCTTTCCCCAGCCCTGGCCACCCTAAAACCacaagctggccttatcgtacctcaacgctgtgccaagctcaccacccagtgtagtggtgagttttgcaccctcagcaccccactagcaaatgacacttcacgagag Alignment from GeneWise CTCTGGCTACTCTGAAACCACAGGCTGGGCTTATTGTACCTCAG-GCTGTGCCAAGCTCACAGCCCAGTGTTGTG aaagcacatttcattgtagagtccctatatcctcctcccgctttccccagCCCTGGCCACCCTAAAACCACAAGCTGGCCTTATCGTACCTCAACGCTGTGCCAAGCTCACCACCCAGTGTAGTGgtgagttttgcaccctcagcaccccactagcaaatgacacttcacgagag #### Prpf19_ID3047_6 --> 0 - 0 Original Alignment GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTG-GTGGGA---ATGACCCCTGAGATTATCCAGAAG tcttgttgtagtgagattgccccactctgtcttttctcttgatcccacagGGGGCTGGAGAGGCCATGGACTTGGGTGAGCTGCGTGGGGGGAATGACCCCTGAGATTATCCAGAAAgtgagttgagagcccgcctcccatgaaactgcaatctcatcatcacaacc Alignment from CESAR GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTG-GTG---GGAATGACCCCTGAGATTATCCAGAAG tcttgttgtagtgagattgccccactctgtcttttctcttgatcccacagGGGGCTGGAGAGGCCATGGACTTGGGTGAGCTGCGTGGGGGGAATGACCCCTGAGATTATCCAGAAAgtgagttgagagcccgcctcccatgaaactgcaatctcatcatcacaacc Alignment from Spaln_aa2Genome GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTG----GTGGGAATGACCCCTGAGATTATCCAGAAG tcttgttgtagtgagattgccccactctgtcttttctcttgatcccacagGGGGCTGGAGAGGCCATGGACTTGGGTGAGCTGCGTgGGGGGAATGACCCCTGAGATTATCCAGAAAgtgagttgagagcccgcctcccatgaaactgcaatctcatcatcacaacc Alignment from Spaln_nt2Genome GGTGCAGGAGAGCCCATGGATTTGGGTGAGC----TGGTGGGAATGACCCCTGAGATTATCCAGAAG tcttgttgtagtgagattgccccactctgtcttttctcttgatcccacagGGGGCTGGAGAGGCCATGGACTTGGGTGAGCTGCGTGGGGGGAATGACCCCTGAGATTATCCAGAAAgtgagttgagagcccgcctcccatgaaactgcaatctcatcatcacaacc Alignment from Pairagon GGTGCAGGAGAGCCCATGGATTTGGGTGAGC----TGGTGGGAATGACCCCTGAGATTATCCAGAAG tcttgttgtagtgagattgccccactctgtcttttctcttgatcccacagGGGGCTGGAGAGGCCATGGACTTGGGTGAGCTGCGTGGGGGGAATGACCCCTGAGATTATCCAGAAAgtgagttgagagcccgcctcccatgaaactgcaatctcatcatcacaacc Alignment from Exonerate_protein2genome GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTG----GTGGGAATGACCCCTGAGATTATCCAGAAG tcttgttgtagtgagattgccccactctgtcttttctcttgatcccacagGGGGCTGGAGAGGCCATGGACTTGGGTGAGCTGCGTGGGGGGAATGACCCCTGAGATTATCCAGAAAgtgagttgagagcccgcctcccatgaaactgcaatctcatcatcacaacc Alignment from Exonerate_coding2genome GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTG----GTGGGAATGACCCCTGAGATTATCCAGAAG tcttgttgtagtgagattgccccactctgtcttttctcttgatcccacagGGGGCTGGAGAGGCCATGGACTTGGGTGAGCTGCGTGGGGGGAATGACCCCTGAGATTATCCAGAAAgtgagttgagagcccgcctcccatgaaactgcaatctcatcatcacaacc Alignment from GeneWise GGTGCAGGAGAGCCCATGGATTTGGGTGAGCTG-GTGGGA---ATGACCCCTGAGATTATCCAGAAG tcttgttgtagtgagattgccccactctgtcttttctcttgatcccacagGGGGCTGGAGAGGCCATGGACTTGGGTGAGCTGCGTGGGGGGAATGACCCCTGAGATTATCCAGAAAgtgagttgagagcccgcctcccatgaaactgcaatctcatcatcacaacc #### Prpf19_ID3050_9 --> 0 - 1 Original Alignment GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCTCTG-GACCTGTGTCCCTCAGACACCAACAAGATTCTCACTg aggggctttgggcactaggaggcaattatcagcaggctttctgcccctagGGTCTACACAGTGCTAGTATTCCCGGGATTCTTGCTCTCCGACCTGTGTCCCTCAGACACTAACAAGATTCTCACTggtcagtgtaggcctgacttaagaaataataatgaaccatggaccctgcat Alignment from CESAR GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCTCTG-GACCTGTGTCCCTCAGACACCAACAAGATTCTCACTg aggggctttgggcactaggaggcaattatcagcaggctttctgcccctagGGTCTACACAGTGCTAGTATTCCCGGGATTCTTGCTCTCCGACCTGTGTCCCTCAGACACTAACAAGATTCTCACTggtcagtgtaggcctgacttaagaaataataatgaaccatggaccctgcat Alignment from Spaln_aa2Genome GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCTCTG-GACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG aggggctttgggcactaggaggcaattatcagcaggctttctgcccctagGGTCTACACAGTGCTAGTATTCCCGGGATTCTTGCTCTCcGACCTGTGTCCCTCAGACACTAACAAGATTCTCACTGgtcagtgtaggcctgacttaagaaataataatgaaccatggaccctgcat Alignment from Spaln_nt2Genome GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCTCTG-GACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG aggggctttgggcactaggaggcaattatcagcaggctttctgcccctagGGTCTACACAGTGCTAGTATTCCCGGGATTCTTGCTCTCCGACCTGTGTCCCTCAGACACTAACAAGATTCTCACTGgtcagtgtaggcctgacttaagaaataataatgaaccatggaccctgcat Alignment from Pairagon GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCTCT-GGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG aggggctttgggcactaggaggcaattatcagcaggctttctgcccctagGGTCTACACAGTGCTAGTATTCCCGGGATTCTTGCTCTCCGACCTGTGTCCCTCAGACACTAACAAGATTCTCACTGgtcagtgtaggcctgacttaagaaataataatgaaccatggaccctgcat Alignment from Exonerate_protein2genome GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCTCTG-GACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG aggggctttgggcactaggaggcaattatcagcaggctttctgcccctagGGTCTACACAGTGCTAGTATTCCCGGGATTCTTGCTCTCCGACCTGTGTCCCTCAGACACTAACAAGATTCTCACTGgtcagtgtaggcctgacttaagaaataataatgaaccatggaccctgcat Alignment from Exonerate_coding2genome GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCTCTG-GACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG aggggctttgggcactaggaggcaattatcagcaggctttctgcccctagGGTCTACACAGTGCTAGTATTCCCGGGATTCTTGCTCTCCGACCTGTGTCCCTCAGACACTAACAAGATTCTCACTGgtcagtgtaggcctgacttaagaaataataatgaaccatggaccctgcat Alignment from GeneWise GGTCTACACAGTGCTAGCATTCCTGGGATTCTCGCT-CTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG aggggctttgggcactaggaggcaattatcagcaggctttctgcccctagGGTCTACACAGTGCTAGTATTCCCGGGATTCTTGCTCTCCGACCTGTGTCCCTCAGACACTAACAAGATTCTCACTGgtcagtgtaggcctgacttaagaaataataatgaaccatggaccctgcat #### Prpf19_ID3053_12 --> 0 - 1 Original Alignment TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAG-ACCTCCGGCTGCt cttgaaggcaccagaccaactttggattaacacactgctctttcctacagTACTGGGCCTTCTTTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGCACCTCTGGCTGCtgttagagatcactgagacactgaacattccttctattttggcagtagttt Alignment from CESAR TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAG-ACCTCCGGCTGCt cttgaaggcaccagaccaactttggattaacacactgctctttcctacagTACTGGGCCTTCTTTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGCACCTCTGGCTGCtgttagagatcactgagacactgaacattccttctattttggcagtagttt Alignment from Spaln_aa2Genome TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAG-ACCTCCGGCTGCT cttgaaggcaccagaccaactttggattaacacactgctctttcctacagTACTGGGCCTTCTTTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGcACCTCTGGCTGCTgttagagatcactgagacactgaacattccttctattttggcagtagttt Alignment from Spaln_nt2Genome TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAG-ACCTCCGGCTGCT cttgaaggcaccagaccaactttggattaacacactgctctttcctacagTACTGGGCCTTCTTTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGCACCTCTGGCTGCTgttagagatcactgagacactgaacattccttctattttggcagtagttt Alignment from Pairagon TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAG-ACCTCCGGCTGCT cttgaaggcaccagaccaactttggattaacacactgctctttcctacagTACTGGGCCTTCTTTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGCACCTCTGGCTGCTgttagagatcactgagacactgaacattccttctattttggcagtagttt Alignment from Exonerate_protein2genome TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAG-ACCTCCGGCTGCT cttgaaggcaccagaccaactttggattaacacactgctctttcctacagTACTGGGCCTTCTTTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGCACCTCTGGCTGCTgttagagatcactgagacactgaacattccttctattttggcagtagttt Alignment from Exonerate_coding2genome TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAG-ACCTCCGGCTGCT cttgaaggcaccagaccaactttggattaacacactgctctttcctacagTACTGGGCCTTCTTTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGCACCTCTGGCTGCTgttagagatcactgagacactgaacattccttctattttggcagtagttt Alignment from GeneWise TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAG-ACCTCCGGCTGCT cttgaaggcaccagaccaactttggattaacacactgctctttcctacagTACTGGGCCTTCTTTGACATCCAGACAGGGCGTGTGCTCACTAAGGTGACAGATGAGCACCTCTGGCTGCTgttagagatcactgagacactgaacattccttctattttggcagtagttt #### Prpf19_ID3055_14 --> 0 - 0 Original Alignment GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGC-AAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tgcagctttcctcattaagtcaatcaattggttttcatctgtcttcacagGAGCATACTAATGTAGCGATCTTCCCT------GCTGGGCCTATCACCAGCATTGTGTTCTCCGAGAATGGGTACTACTTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGACAAGTTGAAGAACTTTAAAATGTTGCAGTTGGACAACAACTTTGAGgtaaactataccccatttctactgctgtgattgagctatcccttgtgatg Alignment from CESAR GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGC-AAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tgcagctttcctcattaagtcaatcaattggttttcatctgtcttcacagGAGCATACTAATGTAGCGATCTTCCCT------GCTGGGCCTATCACCAGCATTGTGTTCTCCGAGAATGGGTACTACTTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGACAAGTTGAAGAACTTTAAAATGTTGCAGTTGGACAACAACTTTGAGgtaaactataccccatttctactgctgtgattgagctatcccttgtgatg Alignment from Spaln_aa2Genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGC-AAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tgcagctttcctcattaagtcaatcaattggttttcatctgtcttcacagGAGCATACTAATGTAGCGATCTTCCCT------GCTGGGCCTATCACCAGCATTGTGTTCTCCGAGAATGGGTACTACTTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGAcAAGTTGAAGAACTTTAAAATGTTGCAGTTGGACAACAACTTTGAGgtaaactataccccatttctactgctgtgattgagctatcccttgtgatg Alignment from Spaln_nt2Genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACG-CAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tgcagctttcctcattaagtcaatcaattggttttcatctgtcttcacagGAGCATACTAATGTAGCGATCTTCCCTG------CTGGGCCTATCACCAGCATTGTGTTCTCCGAGAATGGGTACTACTTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGACAAGTTGAAGAACTTTAAAATGTTGCAGTTGGACAACAACTTTGAGgtaaactataccccatttctactgctgtgattgagctatcccttgtgatg Alignment from Pairagon GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACG-CAAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tgcagctttcctcattaagtcaatcaattggttttcatctgtcttcacagGAGCATACTAATGTAGCGATCTTCCCTG------CTGGGCCTATCACCAGCATTGTGTTCTCCGAGAATGGGTACTACTTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGACAAGTTGAAGAACTTTAAAATGTTGCAGTTGGACAACAACTTTGAGgtaaactataccccatttctactgctgtgattgagctatcccttgtgatg Alignment from Exonerate_protein2genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGC-AAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tgcagctttcctcattaagtcaatcaattggttttcatctgtcttcacagGAGCATACTAATGTAGCGATCTTCCCT------GCTGGGCCTATCACCAGCATTGTGTTCTCCGAGAATGGGTACTACTTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGACAAGTTGAAGAACTTTAAAATGTTGCAGTTGGACAACAACTTTGAGgtaaactataccccatttctactgctgtgattgagctatcccttgtgatg Alignment from Exonerate_coding2genome GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGC-AAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tgcagctttcctcattaagtcaatcaattggttttcatctgtcttcacagGAGCATACTAATGTAGCGATCTTCCCT------GCTGGGCCTATCACCAGCATTGTGTTCTCCGAGAATGGGTACTACTTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGACAAGTTGAAGAACTTTAAAATGTTGCAGTTGGACAACAACTTTGAGgtaaactataccccatttctactgctgtgattgagctatcccttgtgatg Alignment from GeneWise GAGCGTACCAATGTGGCCAACTTCCCTGGCCATTCTGGCCCCATTACCAGCATCGCCTTCTCTGAGAATGGGTACTACCTGGCCACAGCAGCTGATGATTCCTCAGTCAAGCTCTGGGACTTACGC-AAGTTGAAGAACTTCAAGACATTGCAGCTGGACAACAACTTTGAG tgcagctttcctcattaagtcaatcaattggttttcatctgtcttcacagGAGCATACTAATGTAGCGATCTTCCCT------GCTGGGCCTATCACCAGCATTGTGTTCTCCGAGAATGGGTACTACTTGGCAACGGCAACAGATGATTCCCCAGTCAAGCTCTGGGACTTACGACAAGTTGAAGAACTTTAAAATGTTGCAGTTGGACAACAACTTTGAGgtaaactataccccatttctactgctgtgattgagctatcccttgtgatg #### Pygm_ID1683_7 --> 2 - 0 Original Alignment tcAATGTTGGCGGCTACATCCAGGCT-GTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT gagtccatctgttgcagttagcactgagacatttctgttttgtatttcagtcAATGTTGGTGGCTACATTCTGGCTCGTGCTGGACCGGAACCTAGCTGAGAACATCTCCCGTGTATTATACCCCAATGATAATgtgggtcaccctccaccagaggcaataaacctaggcaaccatgaagggga Alignment from CESAR tcAATGTTGGCGGCTACATCCAGGCT-GTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT aagtccatctgttgcagttagcactgagacatttctgttttgtatttcagtcAATGTTGGTGGCTACATTCTGGCTCGTGCTGGACCGGAACCTAGCTGAGAACATCTCCCGTGTATTATACCCCAATGATAATgtgggtcaccctccaccagaggcaataaacctaggcaaccatgaagggga Alignment from Spaln_aa2Genome TCAATGTTGGCGGCTACATCCAGGCT-GTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT gagtccatctgttgcagttagcactgagacatttctgttttgtatttcagTCAATGTTGGTGGCTACATTCTGGCTcGTGCTGGACCGGAACCTAGCTGAGAACATCTCCCGTGTATTATACCCCAATGATAATgtgggtcaccctccaccagaggcaataaacctaggcaaccatgaagggga Alignment from Spaln_nt2Genome TCAATGTTGGCGGCTACATCCAGGCT-GTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT gagtccatctgttgcagttagcactgagacatttctgttttgtatttcagTCAATGTTGGTGGCTACATTCTGGCTCGTGCTGGACCGGAACCTAGCTGAGAACATCTCCCGTGTATTATACCCCAATGATAATgtgggtcaccctccaccagaggcaataaacctaggcaaccatgaagggga Alignment from Pairagon TCAATGTTGGCGGCTACATCCAGGCT-GTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT gagtccatctgttgcagttagcactgagacatttctgttttgtatttcagTCAATGTTGGTGGCTACATTCTGGCTCGTGCTGGACCGGAACCTAGCTGAGAACATCTCCCGTGTATTATACCCCAATGATAATgtgggtcaccctccaccagaggcaataaacctaggcaaccatgaagggga Alignment from Exonerate_protein2genome TCAATGTTGGCGGCTACATCCAGGCT-GTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT gagtccatctgttgcagttagcactgagacatttctgttttgtatttcagTCAATGTTGGTGGCTACATTCTGGCTCGTGCTGGACCGGAACCTAGCTGAGAACATCTCCCGTGTATTATACCCCAATGATAATgtgggtcaccctccaccagaggcaataaacctaggcaaccatgaagggga Alignment from Exonerate_coding2genome TCAATGTTGGCGGCTACATCCAGGCT-GTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT gagtccatctgttgcagttagcactgagacatttctgttttgtatttcagTCAATGTTGGTGGCTACATTCTGGCTCGTGCTGGACCGGAACCTAGCTGAGAACATCTCCCGTGTATTATACCCCAATGATAATgtgggtcaccctccaccagaggcaataaacctaggcaaccatgaagggga Alignment from GeneWise TCAATGTTGGCGGCTACATC-CAGGCTGTGCTGGACCGAAACCTGGCCGAGAACATCTCGCGTGTTTTGTACCCCAATGATAAT gagtccatctgttgcagttagcactgagacatttctgttttgtatttcagTCAATGTTGGTGGCTACATTCTGGCTCGTGCTGGACCGGAACCTAGCTGAGAACATCTCCCGTGTATTATACCCCAATGATAATgtgggtcaccctccaccagaggcaataaacctaggcaaccatgaagggga #### Pygm_ID1684_8 --> 0 - 0 Original Alignment TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGA-CGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgctgttaattgttggcctgcctgatcattttcttccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTGGTGGTGGCTGCCAGCCTCCAAGACATCATCCGACCGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtaagattctggttcaaacttttactctccctaacatcccataacatggc Alignment from CESAR TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGA-CGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgctgttaattgttggcctgcctgatcattttcttccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTGGTGGTGGCTGCCAGCCTCCAAGACATCATCCGACCGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtaagattctggttcaaacttttactctccctaacatcccataacatggc Alignment from Spaln_aa2Genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGACGT-TTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgctgttaattgttggcctgcctgatcattttcttccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTGGTGGTGGCTGCCAGCCTCCAAGACATCATCCGACCGtTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtaagattctggttcaaacttttactctccctaacatcccataacatggc Alignment from Spaln_nt2Genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGA-CGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgctgttaattgttggcctgcctgatcattttcttccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTGGTGGTGGCTGCCAGCCTCCAAGACATCATCCGACCGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtaagattctggttcaaacttttactctccctaacatcccataacatggc Alignment from Pairagon TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGA-CGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgctgttaattgttggcctgcctgatcattttcttccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTGGTGGTGGCTGCCAGCCTCCAAGACATCATCCGACCGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtaagattctggttcaaacttttactctccctaacatcccataacatggc Alignment from Exonerate_protein2genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGA-CGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgctgttaattgttggcctgcctgatcattttcttccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTGGTGGTGGCTGCCAGCCTCCAAGACATCATCCGACCGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtaagattctggttcaaacttttactctccctaacatcccataacatggc Alignment from Exonerate_coding2genome TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGA-CGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgctgttaattgttggcctgcctgatcattttcttccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTGGTGGTGGCTGCCAGCCTCCAAGACATCATCCGACCGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtaagattctggttcaaacttttactctccctaacatcccataacatggc Alignment from GeneWise TTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCTGCCACCCTCCAGGACATCATCCGA-CGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTCGATGCCTTCCCTGATAAG atataatttgctgctgttaattgttggcctgcctgatcattttcttccagTTCTTTGAAGGGAAGGAGCTGCGGCTGAAGCAGGAGTACTTGGTGGTGGCTGCCAGCCTCCAAGACATCATCCGACCGTTTCAAGTCCTCCAAGTTTGGCAGCCGTGATCCTGTGCGCACAAACTTTGATGCCTTCCCTGATAAGgtaagattctggttcaaacttttactctccctaacatcccataacatggc #### Pygm_ID1686_10 --> 0 - 0 Original Alignment GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCAC-ACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactgaaatccaatctataacactgtttcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACCACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCCGTGCATCTCATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtaagtatgggacaatgagaaaggagccccagcatgagggagcatatgta Alignment from CESAR GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCAC-ACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactgaaatccaatctataacactgtttcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACCACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCCGTGCATCTCATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtaagtatgggacaatgagaaaggagccccagcatgagggagcatatgta Alignment from Spaln_aa2Genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCAC-ACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactgaaatccaatctataacactgtttcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACcACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCCGTGCATCTCATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtaagtatgggacaatgagaaaggagccccagcatgagggagcatatgta Alignment from Spaln_nt2Genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCA-CACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactgaaatccaatctataacactgtttcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACCACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCCGTGCATCTCATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtaagtatgggacaatgagaaaggagccccagcatgagggagcatatgta Alignment from Pairagon GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCA-CACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactgaaatccaatctataacactgtttcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACCACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCCGTGCATCTCATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtaagtatgggacaatgagaaaggagccccagcatgagggagcatatgta Alignment from Exonerate_protein2genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCAC-ACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactgaaatccaatctataacactgtttcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACCACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCCGTGCATCTCATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtaagtatgggacaatgagaaaggagccccagcatgagggagcatatgta Alignment from Exonerate_coding2genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCAC-ACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactgaaatccaatctataacactgtttcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACCACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCCGTGCATCTCATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtaagtatgggacaatgagaaaggagccccagcatgagggagcatatgta Alignment from GeneWise GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCAC-ACGGTGCTGCCTGAAGCCCTGGAGCGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactgaaatccaatctataacactgtttcagGCCTGGGATGTTACAGTAAAGACTTGTGCCTACACCAACCACCACAGTGCTGCCTGAAGCCCTGGAGCGCTGGCCCGTGCATCTCATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtaagtatgggacaatgagaaaggagccccagcatgagggagcatatgta #### Rab1b_ID845_3 --> 0 - 0 Original Alignment GATGACACTTAC-ACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT ctgtatgtcaggtttgttgcctactcaggtttctttcttattatttacagGATGATACTTACCACGGAGAGCTACATCAGCACCATTGGTGTGGATTTTAAGATACGAACCATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgtcagtttaagcctgttccagccacaactgactgaggttattaagtgaaa Alignment from CESAR GATGACACTTAC-ACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT ctgtatgtcaggtttgttgcctactcaggtttctttcttattatttacagGATGATACTTACCACGGAGAGCTACATCAGCACCATTGGTGTGGATTTTAAGATACGAACCATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgtcagtttaagcctgttccagccacaactgactgaggttattaagtgaaa Alignment from Spaln_aa2Genome GATGACACTTAC-ACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT ctgtatgtcaggtttgttgcctactcaggtttctttcttattatttacagGATGATACTTACcACGGAGAGCTACATCAGCACCATTGGTGTGGATTTTAAGATACGAACCATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgtcagtttaagcctgttccagccacaactgactgaggttattaagtgaaa Alignment from Spaln_nt2Genome GATGACACTTAC-ACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT ctgtatgtcaggtttgttgcctactcaggtttctttcttattatttacagGATGATACTTACCACGGAGAGCTACATCAGCACCATTGGTGTGGATTTTAAGATACGAACCATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgtcagtttaagcctgttccagccacaactgactgaggttattaagtgaaa Alignment from Pairagon GATGACACTTA-CACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT ctgtatgtcaggtttgttgcctactcaggtttctttcttattatttacagGATGATACTTACCACGGAGAGCTACATCAGCACCATTGGTGTGGATTTTAAGATACGAACCATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgtcagtttaagcctgttccagccacaactgactgaggttattaagtgaaa Alignment from Exonerate_protein2genome GATGACACTTAC-ACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT ctgtatgtcaggtttgttgcctactcaggtttctttcttattatttacagGATGATACTTACCACGGAGAGCTACATCAGCACCATTGGTGTGGATTTTAAGATACGAACCATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgtcagtttaagcctgttccagccacaactgactgaggttattaagtgaaa Alignment from Exonerate_coding2genome GATGACACTTAC-ACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT ctgtatgtcaggtttgttgcctactcaggtttctttcttattatttacagGATGATACTTACCACGGAGAGCTACATCAGCACCATTGGTGTGGATTTTAAGATACGAACCATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgtcagtttaagcctgttccagccacaactgactgaggttattaagtgaaa Alignment from GeneWise GATGACACTTAC-ACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGATTCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATT ctgtatgtcaggtttgttgcctactcaggtttctttcttattatttacagGATGATACTTACCACGGAGAGCTACATCAGCACCATTGGTGTGGATTTTAAGATACGAACCATTAAGCTGGATGGCAAAACCATCAAACTGCAGATCgtcagtttaagcctgttccagccacaactgactgaggttattaagtgaaa #### Rab3il1_ID2648_4 --> 0 - 0 Original Alignment GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAG-GCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG tgcccgggtttttttagtgagaactcctttccacatttgtttggtcacagGAAGCCCACAAAATGGTGCAGGAAGCAAACATGAAACAGCGCAACATCAGAAAAGCAGTTGAAGGAAGCTTGGGGCAAGgtatgcactagcgctgtgcgccttacgctgtgtgcctatgcagccctgtg Alignment from CESAR GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAG-GCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG tgcccgggtttttttagtgagaactcctttccacatttgtttggtcacagGAAGCCCACAAAATGGTGCAGGAAGCAAACATGAAACAGCGCAACATCAGAAAAGCAGTTGAAGGAAGCTTGGGGCAAGgtatgcactagcgctgtgcgccttacgctgtgtgcctatgcagccctgtg Alignment from Spaln_aa2Genome GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAG-GCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG tgcccgggtttttttagtgagaactcctttccacatttgtttggtcacagGAAGCCCACAAAATGGTGCAGGAAGCAAACATGAAACAGcGCAACATCAGAAAAGCAGTTGAAGGAAGCTTGGGGCAAGgtatgcactagcgctgtgcgccttacgctgtgtgcctatgcagccctgtg Alignment from Spaln_nt2Genome GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAG-GCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG tgcccgggtttttttagtgagaactcctttccacatttgtttggtcacagGAAGCCCACAAAATGGTGCAGGAAGCAAACATGAAACAGCGCAACATCAGAAAAGCAGTTGAAGGAAGCTTGGGGCAAGgtatgcactagcgctgtgcgccttacgctgtgtgcctatgcagccctgtg Alignment from Pairagon GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAG-GCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG tgcccgggtttttttagtgagaactcctttccacatttgtttggtcacagGAAGCCCACAAAATGGTGCAGGAAGCAAACATGAAACAGCGCAACATCAGAAAAGCAGTTGAAGGAAGCTTGGGGCAAGgtatgcactagcgctgtgcgccttacgctgtgtgcctatgcagccctgtg Alignment from Exonerate_protein2genome GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAG-GCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG tgcccgggtttttttagtgagaactcctttccacatttgtttggtcacagGAAGCCCACAAAATGGTGCAGGAAGCAAACATGAAACAGCGCAACATCAGAAAAGCAGTTGAAGGAAGCTTGGGGCAAGgtatgcactagcgctgtgcgccttacgctgtgtgcctatgcagccctgtg Alignment from Exonerate_coding2genome GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAG-GCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG tgcccgggtttttttagtgagaactcctttccacatttgtttggtcacagGAAGCCCACAAAATGGTGCAGGAAGCAAACATGAAACAGCGCAACATCAGAAAAGCAGTTGAAGGAAGCTTGGGGCAAGgtatgcactagcgctgtgcgccttacgctgtgtgcctatgcagccctgtg Alignment from GeneWise GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAG-GCGACATCGGAAAAGCAGTTGAAGGAGGCTTGGGGCAAG tgcccgggtttttttagtgagaactcctttccacatttgtttggtcacagGAAGCCCACAAAATGGTGCAGGAAGCAAACATGAAACAGCGCAACATCAGAAAAGCAGTTGAAGGAAGCTTGGGGCAAGgtatgcactagcgctgtgcgccttacgctgtgtgcctatgcagccctgtg #### Rasgrp2_ID1711_10 --> 0 - 0 Original Alignment CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCC-TTGGTGGCAGAGCACATTGAGAAGATGGTGGAG ggttgacttcaactacaactctctggttccttactgagctgcttccccagCCTACCAGCCCTACCAGCTGTATGTCACCTCCTCGACCCCCAGTGTTAGAAGAGTGGACATCAGCTGCTAAACCTAATCTTGATCAGGCCCTTAGTGGCAGAGCATATTGAGAGGATGGTTGAGgtgcgcgtgcactgggttttctgaagctctacccggcacccaatggtcca Alignment from CESAR CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCC-TTGGTGGCAGAGCACATTGAGAAGATGGTGGAG ggttgacttcaactacaactctctggttccttactgagctgcttccccagCCTACCAGCCCTACCAGCTGTATGTCACCTCCTCGACCCCCAGTGTTAGAAGAGTGGACATCAGCTGCTAAACCTAATCTTGATCAGGCCCTTAGTGGCAGAGCATATTGAGAGGATGGTTGAGgtgcgcgtgcactgggttttctgaagctctacccggcacccaatggtcca Alignment from Spaln_aa2Genome CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCCTTG-GTGGCAGAGCACATTGAGAAGATGGTGGAG ggttgacttcaactacaactctctggttccttactgagctgcttccccagCCTACCAGCCCTACCAGCTGTATGTCACCTCCTCGACCCCCAGTGTTAGAAGAGTGGACATCAGCTGCTAAACCTAATCTTGATCAGGCCCTTaGTGGCAGAGCATATTGAGAGGATGGTTGAGgtgcgcgtgcactgggttttctgaagctctacccggcacccaatggtcca Alignment from Spaln_nt2Genome CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCC-TTGGTGGCAGAGCACATTGAGAAGATGGTGGAG ggttgacttcaactacaactctctggttccttactgagctgcttccccagCCTACCAGCCCTACCAGCTGTATGTCACCTCCTCGACCCCCAGTGTTAGAAGAGTGGACATCAGCTGCTAAACCTAATCTTGATCAGGCCCTTAGTGGCAGAGCATATTGAGAGGATGGTTGAGgtgcgcgtgcactgggttttctgaagctctacccggcacccaatggtcca Alignment from Pairagon CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAG-CCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG ggttgacttcaactacaactctctggttccttactgagctgcttccccagCCTACCAGCCCTACCAGCTGTATGTCACCTCCTCGACCCCCAGTGTTAGAAGAGTGGACATCAGCTGCTAAACCTAATCTTGATCAGGCCCTTAGTGGCAGAGCATATTGAGAGGATGGTTGAGgtgcgcgtgcactgggttttctgaagctctacccggcacccaatggtcca Alignment from Exonerate_protein2genome CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCC-TTGGTGGCAGAGCACATTGAGAAGATGGTGGAG ggttgacttcaactacaactctctggttccttactgagctgcttccccagCCTACCAGCCCTACCAGCTGTATGTCACCTCCTCGACCCCCAGTGTTAGAAGAGTGGACATCAGCTGCTAAACCTAATCTTGATCAGGCCCTTAGTGGCAGAGCATATTGAGAGGATGGTTGAGgtgcgcgtgcactgggttttctgaagctctacccggcacccaatggtcca Alignment from Exonerate_coding2genome CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAAGCC-TTGGTGGCAGAGCACATTGAGAAGATGGTGGAG ggttgacttcaactacaactctctggttccttactgagctgcttccccagCCTACCAGCCCTACCAGCTGTATGTCACCTCCTCGACCCCCAGTGTTAGAAGAGTGGACATCAGCTGCTAAACCTAATCTTGATCAGGCCCTTAGTGGCAGAGCATATTGAGAGGATGGTTGAGgtgcgcgtgcactgggttttctgaagctctacccggcacccaatggtcca Alignment from GeneWise CCAACCAGCCCCACCAGCTGCACCCCGCCTCCCCGGCCCCCTGTGTTGGAAGAGTGGACCTCAGTTGCCAAGCCTAAGCTGGACCAA-GCCTTGGTGGCAGAGCACATTGAGAAGATGGTGGAG ggttgacttcaactacaactctctggttccttactgagctgcttccccagCCTACCAGCCCTACCAGCTGTATGTCACCTCCTCGACCCCCAGTGTTAGAAGAGTGGACATCAGCTGCTAAACCTAATCTTGATCAGGCCCTTAGTGGCAGAGCATATTGAGAGGATGGTTGAGgtgcgcgtgcactgggttttctgaagctctacccggcacccaatggtcca #### Rbp4_ID7525_2 --> 0 - 0 Original Alignment GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCC-GAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT atgtggccctggctctttgcccctgggtagactcttaatgcttcctacagGGCAGTCTCCGAGGTGAAATGGCATGGGTGTGGGCACTCGTGCTTCTGTCAGCCCTGGGAGGTGGTAGCACACGAGCATGAC------TTGAGCAGCTTTCAAGTTAAAGATAACTTTGACAAGGCTCATgtaaggttcagcccatttttcccaatcttgcaggtgggaggtgaacctag Alignment from CESAR GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCC-GAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT atgtggccctggctctttgcccctgggtagactcttaatgcttcctacagGGCAGTCTCCGAGGTGAAATGGCATGGGTGTGGGCACTCGTGCTTCTGTCAGCCCTGGGAGGTGGTAGCACACGAGCATGAC------TTGAGCAGCTTTCAAGTTAAAGATAACTTTGACAAGGCTCATgtaaggttcagcccatttttcccaatcttgcaggtgggaggtgaacctag Alignment from Spaln_aa2Genome GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCC-GAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT atgtggccctggctctttgcccctgggtagactcttaatgcttcctacagGGCAGTCTCCGAGGTGAAATGGCATGGGTGTGGGCACTCGTGCTTCTGTCAGCCCTGGGAGGTGGTAGCACAcGAGCATGAC------TTGAGCAGCTTTCAAGTTAAAGATAACTTTGACAAGGCTCATgtaaggttcagcccatttttcccaatcttgcaggtgggaggtgaacctag Alignment from Spaln_nt2Genome GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGC-CGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT atgtggccctggctctttgcccctgggtagactcttaatgcttcctacagGGCAGTCTCCGAGGTGAAATGGCATGGGTGTGGGCACTCGTGCTTCTGTCAGCCCTGGGAGGTGGTAGCACACGAGCATGACT------TGAGCAGCTTTCAAGTTAAAGATAACTTTGACAAGGCTCATgtaaggttcagcccatttttcccaatcttgcaggtgggaggtgaacctag Alignment from Pairagon GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGC-CGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT atgtggccctggctctttgcccctgggtagactcttaatgcttcctacagGGCAGTCTCCGAGGTGAAATGGCATGGGTGTGGGCACTCGTGCTTCTGTCAGCCCTGGGAGGTGGTAGCACACGAGCATGACT------TGAGCAGCTTTCAAGTTAAAGATAACTTTGACAAGGCTCATgtaaggttcagcccatttttcccaatcttgcaggtgggaggtgaacctag Alignment from Exonerate_protein2genome GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGCGCC-GAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT atgtggccctggctctttgcccctgggtagactcttaatgcttcctacagGGCAGTCTCCGAGGTGAAATGGCATGGGTGTGGGCACTCGTGCTTCTGTCAGCCCTGGGAGGTGGTAGCACACGAGCATGAC------TTGAGCAGCTTTCAAGTTAAAGATAACTTTGACAAGGCTCATgtaaggttcagcccatttttcccaatcttgcaggtgggaggtgaacctag Alignment from Exonerate_coding2genome atgtggccctggctctttgcccctgggtagactcttaatgcttcctacagggcagtctccgaggtgaaatggcatgggtgtgggcactcgtgcttctgtcagccctgggaggtggtagcacacgagcatgacttgagcagctttcaagttaaagataactttgacaaggctcatgtaaggttcagcccatttttcccaatcttgcaggtgggaggtgaacctag Alignment from GeneWise GGCAGACTCCGGGGTGAGATGGAGTGGGTGTGGGCGCTCGTGCTGCTGGCGGCTCTGGGAGGCGGCAGC-GCCGAGCGCGACTGCAGGGTGAGCAGCTTCCGAGTCAAGGAGAACTTCGACAAGGCTCGT atgtggccctggctctttgcccctgggtagactcttaatgcttcctacagGGCAGTCTCCGAGGTGAAATGGCATGGGTGTGGGCACTCGTGCTTCTGTCAGCCCTGGGAGGTGGTAGCACACGAGCATGAC------TTGAGCAGCTTTCAAGTTAAAGATAACTTTGACAAGGCTCATgtaaggttcagcccatttttcccaatcttgcaggtgggaggtgaacctag #### Rcor2_ID2095_6 --> 1 - 0 Original Alignment tGATGAACTAGAAGAGGGACGAGGA-GCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tatcctgagtaggatcctccttcatttctcacgctgccctccggccgcagtGATGAAGTAGAAGAGGGACAGGGACGCTGTGAGTGAGGGGGAGCCAGATACTGGAGACCCCAAGCAAAAGgtaaagtccatgagctattgtgtcctatacagcactaaacttgtccctgg Alignment from CESAR tGATGAACTAGAAGAGGGACGAGGA-GCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tatcctgagtaggatcctccttcatttctcacgctgccctccggccgcagtGATGAAGTAGAAGAGGGACAGGGACGCTGTGAGTGAGGGGGAGCCAGATACTGGAGACCCCAAGCAAAAGgtaaagtccatgagctattgtgtcctatacagcactaaacttgtccctgg Alignment from Spaln_aa2Genome TGATGAACTAGAAGAGGGACGAGGA-GCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tatcctgagtaggatcctccttcatttctcacgctgccctccggccgcagTGATGAAGTAGAAGAGGGACAGGGAcGCTGTGAGTGAGGGGGAGCCAGATACTGGAGACCCCAAGCAAAAGgtaaagtccatgagctattgtgtcctatacagcactaaacttgtccctgg Alignment from Spaln_nt2Genome TGATGAACTAGAAGAGGGACGAGGA-GCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tatcctgagtaggatcctccttcatttctcacgctgccctccggccgcagTGATGAAGTAGAAGAGGGACAGGGACGCTGTGAGTGAGGGGGAGCCAGATACTGGAGACCCCAAGCAAAAGgtaaagtccatgagctattgtgtcctatacagcactaaacttgtccctgg Alignment from Pairagon TGATGAACTAGAAGAGGGACGAGGA-GCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tatcctgagtaggatcctccttcatttctcacgctgccctccggccgcagTGATGAAGTAGAAGAGGGACAGGGACGCTGTGAGTGAGGGGGAGCCAGATACTGGAGACCCCAAGCAAAAGgtaaagtccatgagctattgtgtcctatacagcactaaacttgtccctgg Alignment from Exonerate_protein2genome TGATGAACTAGAAGAGGGACGAGGA-GCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tatcctgagtaggatcctccttcatttctcacgctgccctccggccgcagTGATGAAGTAGAAGAGGGACAGGGACGCTGTGAGTGAGGGGGAGCCAGATACTGGAGACCCCAAGCAAAAGgtaaagtccatgagctattgtgtcctatacagcactaaacttgtccctgg Alignment from Exonerate_coding2genome TGATGAACTAGAAGAGGGACGAGGA-GCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tatcctgagtaggatcctccttcatttctcacgctgccctccggccgcagTGATGAAGTAGAAGAGGGACAGGGACGCTGTGAGTGAGGGGGAGCCAGATACTGGAGACCCCAAGCAAAAGgtaaagtccatgagctattgtgtcctatacagcactaaacttgtccctgg Alignment from GeneWise TGATGAACTAGAAGAGGGACGAGGAGCTGTGAGTGAGGGGGAACCGGATACTGGAGACCCCAAGCGAGAG tatcctgagtaggatcctccttcatttctcacgctgccctccggccgcagtgatgaagtagaagagGGAC---------------AGGGACGCTGTGAGTGAGGGGGAGCCAGATACTGGAGACCCCAAGCAAAAGgtaaagtccatgagctattgtgtcctatacagcactaaacttgtccctgg #### Rcor2_ID2099_10 --> 2 - 0 Original Alignment ctATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAA-GAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acaggccattctagatctacagtcagatctgctgcctcccttgctcacagccATTTGTAGATATGGGACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAACGAGGCCCGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATAAGgtatgcgaagggtctcaaggaggaggtgactctctatggaacaccctatt Alignment from CESAR ctATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAA-GAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acaggccattctagatctacagtcagatctgctgcctcccttgctcacagccATTTGTAGATATGGGACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAACGAGGCCCGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATAAGgtatgcgaagggtctcaaggaggaggtgactctctatggaacaccctatt Alignment from Spaln_aa2Genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAA-GAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acaggccattctagatctacagtcagatctgctgcctcccttgctcacagCCATTTGTAGATATGGGACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAcGAGGCCCGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATAAGgtatgcgaagggtctcaaggaggaggtgactctctatggaacaccctatt Alignment from Spaln_nt2Genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAA-GAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acaggccattctagatctacagtcagatctgctgcctcccttgctcacagCCATTTGTAGATATGGGACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAACGAGGCCCGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATAAGgtatgcgaagggtctcaaggaggaggtgactctctatggaacaccctatt Alignment from Pairagon CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAA-GAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acaggccattctagatctacagtcagatctgctgcctcccttgctcacagCCATTTGTAGATATGGGACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAACGAGGCCCGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATAAGgtatgcgaagggtctcaaggaggaggtgactctctatggaacaccctatt Alignment from Exonerate_protein2genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAA-GAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acaggccattctagatctacagtcagatctgctgcctcccttgctcacagCCATTTGTAGATATGGGACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAACGAGGCCCGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATAAGgtatgcgaagggtctcaaggaggaggtgactctctatggaacaccctatt Alignment from Exonerate_coding2genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAA-GAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acaggccattctagatctacagtcagatctgctgcctcccttgctcacagCCATTTGTAGATATGGGACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAACGAGGCCCGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATAAGgtatgcgaagggtctcaaggaggaggtgactctctatggaacaccctatt Alignment from GeneWise CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAA-GAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG acaggccattctagatctacagtcagatctgctgcctcccttgctcacagCCATTTGTAGATATGGGACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGCCGCCACTTTAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAGGATGGGGCCCCCACAGCTCCGGTCCCCACGGAACGAGGCCCGGCGAGGGGCTCCTGTATCAGCCACAGCCCTAGAAGAAGATGATAAGgtatgcgaagggtctcaaggaggaggtgactctctatggaacaccctatt #### Rin1_ID808_3 --> 0 - 1 Original Alignment ACCTTCCTGGTGCGGAAATCT-AACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCg ggacagggatgaacatagagacccagaaaccaagaacctgcccccaacagACGTTTGTGGTACGCAAATACCAACACCCGCCAGTGCCAGGCTCTGTGTGTGCGGTTGCCAGAACCTAGCGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCggtaagcagggtatctaaggggtcggggcacaatgacaagtacatgaatgg Alignment from CESAR ACCTTCCTGGTGCGGAAA-TCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCg ggacagggatgaacatagagacccagaaaccaagaacctgcccccaacagACGTTTGTGGTACGCAAATACCAACACCCGCCAGTGCCAGGCTCTGTGTGTGCGGTTGCCAGAACCTAGCGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCggtaagcagggtatctaaggggtcggggcacaatgacaagtacatgaatgg Alignment from Spaln_aa2Genome ACCTTCCTGGTGCGGAAA-TCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG ggacagggatgaacatagagacccagaaaccaagaacctgcccccaacagACGTTTGTGGTACGCAAAtACCAACACCCGCCAGTGCCAGGCTCTGTGTGTGCGGTTGCCAGAACCTAGCGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCGgtaagcagggtatctaaggggtcggggcacaatgacaagtacatgaatgg Alignment from Spaln_nt2Genome ACCTTCCTGGTGCGGAAAT-CTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG ggacagggatgaacatagagacccagaaaccaagaacctgcccccaacagACGTTTGTGGTACGCAAATACCAACACCCGCCAGTGCCAGGCTCTGTGTGTGCGGTTGCCAGAACCTAGCGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCGgtaagcagggtatctaaggggtcggggcacaatgacaagtacatgaatgg Alignment from Pairagon ACCTTCCTGGTGCGGAAAT-CTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG ggacagggatgaacatagagacccagaaaccaagaacctgcccccaacagACGTTTGTGGTACGCAAATACCAACACCCGCCAGTGCCAGGCTCTGTGTGTGCGGTTGCCAGAACCTAGCGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCGgtaagcagggtatctaaggggtcggggcacaatgacaagtacatgaatgg Alignment from Exonerate_protein2genome ACCTTCCTGGTGCGGAAA-TCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG ggacagggatgaacatagagacccagaaaccaagaacctgcccccaacagACGTTTGTGGTACGCAAATACCAACACCCGCCAGTGCCAGGCTCTGTGTGTGCGGTTGCCAGAACCTAGCGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCGgtaagcagggtatctaaggggtcggggcacaatgacaagtacatgaatgg Alignment from Exonerate_coding2genome ACCTTCCTGGTGCGGAAA-TCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG ggacagggatgaacatagagacccagaaaccaagaacctgcccccaacagACGTTTGTGGTACGCAAATACCAACACCCGCCAGTGCCAGGCTCTGTGTGTGCGGTTGCCAGAACCTAGCGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCGgtaagcagggtatctaaggggtcggggcacaatgacaagtacatgaatgg Alignment from GeneWise ACCTTCCTGGTGCGGAAA-TCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTCTCCAGCCACTATATCGAAGAGAGTACTGGCG ggacagggatgaacatagagacccagaaaccaagaacctgcccccaacagACGTTTGTGGTACGCAAATACCAACACCCGCCAGTGCCAGGCTCTGTGTGTGCGGTTGCCAGAACCTAGCGGCCCCTCTTTTGTCTCCAGCCACTATATTGAAGAAAGTACTGGCGgtaagcagggtatctaaggggtcggggcacaatgacaagtacatgaatgg #### Rin1_ID810_5 --> 1 - 1 Original Alignment aGCCATTCATCAGGCA-GCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGg cttcctccctggagacctttccctagactctctctctctcatacataaaggGCGATTCATCAGGCACGCCACCCACAAAGAGCTAGAGGCTATCTCCCATCTGGGCATGggtgagcatatcctgtagccttttatataagacatgttgaggttacttggt Alignment from CESAR aGCCATTCATCAGGCA-GCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGg cttcctccctggagacctttccctagactctctctctctcatacataaaggGCGATTCATCAGGCACGCCACCCACAAAGAGCTAGAGGCTATCTCCCATCTGGGCATGggtgagcatatcctgtagccttttatataagacatgttgaggttacttggt Alignment from Spaln_aa2Genome AGCCATTCATCAGGCA-GCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG cttcctccctggagacctttccctagactctctctctctcatacataaagGGCGATTCATCAGGCAcGCCACCCACAAAGAGCTAGAGGCTATCTCCCATCTGGGCATGGgtgagcatatcctgtagccttttatataagacatgttgaggttacttggt Alignment from Spaln_nt2Genome AGCCATTCATCAGGCA-GCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG cttcctccctggagacctttccctagactctctctctctcatacataaagGGCGATTCATCAGGCACGCCACCCACAAAGAGCTAGAGGCTATCTCCCATCTGGGCATGGgtgagcatatcctgtagccttttatataagacatgttgaggttacttggt Alignment from Pairagon AGCCATTCATCAGGCA-GCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG cttcctccctggagacctttccctagactctctctctctcatacataaagGGCGATTCATCAGGCACGCCACCCACAAAGAGCTAGAGGCTATCTCCCATCTGGGCATGGgtgagcatatcctgtagccttttatataagacatgttgaggttacttggt Alignment from Exonerate_protein2genome AGCCATTCATCAGGCA-GCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG cttcctccctggagacctttccctagactctctctctctcatacataaagGGCGATTCATCAGGCACGCCACCCACAAAGAGCTAGAGGCTATCTCCCATCTGGGCATGGgtgagcatatcctgtagccttttatataagacatgttgaggttacttggt Alignment from Exonerate_coding2genome AGCCATTCATCAGGCA-GCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG cttcctccctggagacctttccctagactctctctctctcatacataaagGGCGATTCATCAGGCACGCCACCCACAAAGAGCTAGAGGCTATCTCCCATCTGGGCATGGgtgagcatatcctgtagccttttatataagacatgttgaggttacttggt Alignment from GeneWise AGCCATTCATCAGGCA-GCCACCCACAAAGAGCTGGAGGCCATCTCCCATCTGGGCATGG cttcctccctggagacctttccctagactctctctctctcatacataaagGGCGATTCATCAGGCACGCCACCCACAAAGAGCTAGAGGCTATCTCCCATCTGGGCATGGgtgagcatatcctgtagccttttatataagacatgttgaggttacttggt #### Rnaseh2c_ID1104_3 --> 0 - 0 Original Alignment GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGT-CCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG attttgcatgagggtgtctaatgtacaaaactgtggtcttgtcaccccagGACCGCCTTATCGGGGCCACTGGAAGCTTCAGCCATTTCACCTTGTGGGGTCTAGAAACAGTCCCAGGTCCCAGATGCCAAAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAgtgagcagactgaggagctttacctctgatggctgacaattcctctatcc Alignment from CESAR GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGT-CCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG attttgcatgagggtgtctaatgtacaaaactgtggtcttgtcaccccagGACCGCCTTATCGGGGCCACTGGAAGCTTCAGCCATTTCACCTTGTGGGGTCTAGAAACAGTCCCAGGTCCCAGATGCCAAAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAgtgagcagactgaggagctttacctctgatggctgacaattcctctatcc Alignment from Spaln_aa2Genome GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGTCCA-GATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG attttgcatgagggtgtctaatgtacaaaactgtggtcttgtcaccccagGACCGCCTTATCGGGGCCACTGGAAGCTTCAGCCATTTCACCTTGTGGGGTCTAGAAACAGTCCCAGGTCCCaGATGCCAAAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAgtgagcagactgaggagctttacctctgatggctgacaattcctctatcc Alignment from Spaln_nt2Genome CGCTGGAGCGGGA CTTCGACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCG-GGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG ATTTTGCATGAGGgtgtctaatgtacaaaactgtggtcttgtcaccccag----GACCGCCTTATCGGGGCCACTGGAAGCTTCAGCCATTTCACCTTGTGGGGTCTAGAAACAGTCCCAGGTCCCAGATGCCAAAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAgtgagcagactgaggagctttacctctgatggctgacaattcctctatcc Alignment from Pairagon GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCGGGT-CCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG attttgcatgagggtgtctaatgtacaaaactgtggtcttgtcaccccagGACCGCCTTATCGGGGCCACTGGAAGCTTCAGCCATTTCACCTTGTGGGGTCTAGAAACAGTCCCAGGTCCCAGATGCCAAAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAgtgagcagactgaggagctttacctctgatggctgacaattcctctatcc Alignment from Exonerate_protein2genome attttgcatgagggtgtctaatgtacaaaactgtggtcttgtcaccccaggaccgccttatcggggccactggaagcttcagccatttcaccttgtggggtctagaaacagtcccaggtcccagatgccaaagtgcatagggccctaggatggcccaccctagcagcagcagtgagcagactgaggagctttacctctgatggctgacaattcctctatcc Alignment from Exonerate_coding2genome attttgcatgagggtgtctaatgtacaaaactgtggtcttgtcaccccaggaccgccttatcggggccactggaagcttcagccatttcaccttgtggggtctagaaacagtcccaggtcccagatgccaaagtgcatagggccctaggatggcccaccctagcagcagcagtgagcagactgaggagctttacctctgatggctgacaattcctctatcc Alignment from GeneWise GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGTCTGGAAACGGTCCCG-GGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCGATTCACGCC------CAGGTCCCTGAGGAC attttgcatgagggtgtctaatgtacaaaactgtggtcttgtcaccccagGACCGCCTTATCGGGGCCACTGGAAGCTTCAGCCATTTCACCTTGTGGGGTCTAGAAACAGTCCCAGGTCCCAGATGCCAAAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAGTGAGCAGACTGAGGAGCTTTACCTCTGATggctgacaattcctctatcc #### Rps6kb2_ID369_13 --> 0 - 0 Original Alignment CAATCAGAAGAGGATGTGAGCCAGTTT-GATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG tctgtttcagtaccccggatctctaattattatcaattttttttccttagCAATCTGAGGAGGATGTGAGCCAGTTTCGATGCACGATTCACACGGCAAACCCCAGTGGATAGCCCAGATGACACAGCACTAACTGAGAGTGCCAACCAAGCCTTCCTGgtaagcggctgggattatggggaagagcagcgctgcaagggattgcgata Alignment from CESAR CAATCAGAAGAGGATGTGAGCCAGTTT-GATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG tctgtttcagtaccccggatctctaattattatcaattttttttccttagCAATCTGAGGAGGATGTGAGCCAGTTTCGATGCACGATTCACACGGCAAACCCCAGTGGATAGCCCAGATGACACAGCACTAACTGAGAGTGCCAACCAAGCCTTCCTGgtaagcggctgggattatggggaagagcagcgctgcaagggattgcgata Alignment from Spaln_aa2Genome CAATCAGAAGAGGATGTGAGCCAG-TTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG tctgtttcagtaccccggatctctaattattatcaattttttttccttagCAATCTGAGGAGGATGTGAGCCAGtTTCGATGCACGATTCACACGGCAAACCCCAGTGGATAGCCCAGATGACACAGCACTAACTGAGAGTGCCAACCAAGCCTTCCTGgtaagcggctgggattatggggaagagcagcgctgcaagggattgcgata Alignment from Spaln_nt2Genome CAATCAGAAGAGGATGTGAGCCAG-TTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG tctgtttcagtaccccggatctctaattattatcaattttttttccttagCAATCTGAGGAGGATGTGAGCCAGTTTCGATGCACGATTCACACGGCAAACCCCAGTGGATAGCCCAGATGACACAGCACTAACTGAGAGTGCCAACCAAGCCTTCCTGgtaagcggctgggattatggggaagagcagcgctgcaagggattgcgata Alignment from Pairagon CAATCAGAAGAGGATGTGAGCCAGTTT-GATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG tctgtttcagtaccccggatctctaattattatcaattttttttccttagCAATCTGAGGAGGATGTGAGCCAGTTTCGATGCACGATTCACACGGCAAACCCCAGTGGATAGCCCAGATGACACAGCACTAACTGAGAGTGCCAACCAAGCCTTCCTGgtaagcggctgggattatggggaagagcagcgctgcaagggattgcgata Alignment from Exonerate_protein2genome CAATCAGAAGAGGATGTGAGCCAG-TTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG tctgtttcagtaccccggatctctaattattatcaattttttttccttagCAATCTGAGGAGGATGTGAGCCAGTTTCGATGCACGATTCACACGGCAAACCCCAGTGGATAGCCCAGATGACACAGCACTAACTGAGAGTGCCAACCAAGCCTTCCTGgtaagcggctgggattatggggaagagcagcgctgcaagggattgcgata Alignment from Exonerate_coding2genome CAATCAGAAGAGGATGTGAGCCAG-TTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG tctgtttcagtaccccggatctctaattattatcaattttttttccttagCAATCTGAGGAGGATGTGAGCCAGTTTCGATGCACGATTCACACGGCAAACCCCAGTGGATAGCCCAGATGACACAGCACTAACTGAGAGTGCCAACCAAGCCTTCCTGgtaagcggctgggattatggggaagagcagcgctgcaagggattgcgata Alignment from GeneWise CAATCAGAAGAGGATGTGAGC-CAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG tctgtttcagtaccccggatctctaattattatcaattttttttccttagCAATCTGAGGAGGATGTGAGCCAGTTTCGATGCACGATTCACACGGCAAACCCCAGTGGATAGCCCAGATGACACAGCACTAACTGAGAGTGCCAACCAAGCCTTCCTGgtaagcggctgggattatggggaagagcagcgctgcaagggattgcgata #### Rps6kb2_ID370_12 --> 0 - 0 Original Alignment AGGCACCCCTTTTTC-CGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gcaggtagacaagctgagttgacatagtccagtatccttctaatccacagAGGCACCCTTTCTTTCCGACACATCAATTGGGATGACCTCTTAGCCTGCCGCGTGGACCCTCTCTTCAGGCCAAGTCTGgtaaggatatggacgttgttttgactacataatatagagattacctctgt Alignment from CESAR AGGCACCCCTTT-TTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gcaggtagacaagctgagttgacatagtccagtatccttctaatccacagAGGCACCCTTTCTTTCCGACACATCAATTGGGATGACCTCTTAGCCTGCCGCGTGGACCCTCTCTTCAGGCCAAGTCTGgtaaggatatggacgttgttttgactacataatatagagattacctctgt Alignment from Spaln_aa2Genome AGGCACCCCTTT-TTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gcaggtagacaagctgagttgacatagtccagtatccttctaatccacagAGGCACCCTTTCtTTCCGACACATCAATTGGGATGACCTCTTAGCCTGCCGCGTGGACCCTCTCTTCAGGCCAAGTCTGgtaaggatatggacgttgttttgactacataatatagagattacctctgt Alignment from Spaln_nt2Genome AGGCACCCCTT-TTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gcaggtagacaagctgagttgacatagtccagtatccttctaatccacagAGGCACCCTTTCTTTCCGACACATCAATTGGGATGACCTCTTAGCCTGCCGCGTGGACCCTCTCTTCAGGCCAAGTCTGgtaaggatatggacgttgttttgactacataatatagagattacctctgt Alignment from Pairagon AGGCACCCCTT-TTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gcaggtagacaagctgagttgacatagtccagtatccttctaatccacagAGGCACCCTTTCTTTCCGACACATCAATTGGGATGACCTCTTAGCCTGCCGCGTGGACCCTCTCTTCAGGCCAAGTCTGgtaaggatatggacgttgttttgactacataatatagagattacctctgt Alignment from Exonerate_protein2genome AGGCACCCCTTT-TTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gcaggtagacaagctgagttgacatagtccagtatccttctaatccacagAGGCACCCTTTCTTTCCGACACATCAATTGGGATGACCTCTTAGCCTGCCGCGTGGACCCTCTCTTCAGGCCAAGTCTGgtaaggatatggacgttgttttgactacataatatagagattacctctgt Alignment from Exonerate_coding2genome AGGCACCCCTTT-TTCCGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gcaggtagacaagctgagttgacatagtccagtatccttctaatccacagAGGCACCCTTTCTTTCCGACACATCAATTGGGATGACCTCTTAGCCTGCCGCGTGGACCCTCTCTTCAGGCCAAGTCTGgtaaggatatggacgttgttttgactacataatatagagattacctctgt Alignment from GeneWise AGGCACCCCTTTTTC-CGGCACATCAATTGGGATGATCTCTTGGCCCGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gcaggtagacaagctgagttgacatagtccagtatccttctaatccacagAGGCACCCTTTCTTTCCGACACATCAATTGGGATGACCTCTTAGCCTGCCGCGTGGACCCTCTCTTCAGGCCAAGTCTGgtaaggatatggacgttgttttgactacataatatagagattacctctgt #### Rps6kb2_ID371_11 --> 0 - 0 Original Alignment TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTG-GGAGATGCTGCTGATGTCCAG gcctggcccccatttgtttgctttcgccggaaattctgtccggcccacagTTACTGAAGCGAAACCCCACTCAGCAAATTGGGGGTGATTTGCGGAGATGCTGCTGATGTCCAGgtaagcagatctgttgcttaagctgatggagaaaacagatataacaagca Alignment from CESAR TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTG-GGAGATGCTGCTGATGTCCAG gcctggcccccatttgtttgctttcgccggaaattctgtccggcccacagTTACTGAAGCGAAACCCCACTCAGCAAATTGGGGGTGATTTGCGGAGATGCTGCTGATGTCCAGgtaagcagatctgttgcttaagctgatggagaaaacagatataacaagca Alignment from Spaln_aa2Genome TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTG-GGAGATGCTGCTGATGTCCAG gcctggcccccatttgtttgctttcgccggaaattctgtccggcccacagTTACTGAAGCGAAACCCCACTCAGCAAATTGGGGGTGATTTGcGGAGATGCTGCTGATGTCCAGgtaagcagatctgttgcttaagctgatggagaaaacagatataacaagca Alignment from Spaln_nt2Genome TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTG-GGAGATGCTGCTGATGTCCAG gcctggcccccatttgtttgctttcgccggaaattctgtccggcccacagTTACTGAAGCGAAACCCCACTCAGCAAATTGGGGGTGATTTGCGGAGATGCTGCTGATGTCCAGgtaagcagatctgttgcttaagctgatggagaaaacagatataacaagca Alignment from Pairagon TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTG-GGAGATGCTGCTGATGTCCAG gcctggcccccatttgtttgctttcgccggaaattctgtccggcccacagTTACTGAAGCGAAACCCCACTCAGCAAATTGGGGGTGATTTGCGGAGATGCTGCTGATGTCCAGgtaagcagatctgttgcttaagctgatggagaaaacagatataacaagca Alignment from Exonerate_protein2genome TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTG-GGAGATGCTGCTGATGTCCAG gcctggcccccatttgtttgctttcgccggaaattctgtccggcccacagTTACTGAAGCGAAACCCCACTCAGCAAATTGGGGGTGATTTGCGGAGATGCTGCTGATGTCCAGgtaagcagatctgttgcttaagctgatggagaaaacagatataacaagca Alignment from Exonerate_coding2genome TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGTGGCCTG-GGAGATGCTGCTGATGTCCAG gcctggcccccatttgtttgctttcgccggaaattctgtccggcccacagTTACTGAAGCGAAACCCCACTCAGCAAATTGGGGGTGATTTGCGGAGATGCTGCTGATGTCCAGgtaagcagatctgttgcttaagctgatggagaaaacagatataacaagca Alignment from GeneWise TTTCTGAAGCGGAACCCCACTCAGCGAATTGGGGGT-GGCCTGGGAGATGCTGCTGATGTCCAG gcctggcccccatttgtttgctttcgccggaaattctgtccggcccacagTTACTGAAGCGAAACCCCACTCAGCAAATTGGGGGTGATTTGCGGAGATGCTGCTGATGTCCAGgtaagcagatctgttgcttaagctgatggagaaaacagatataacaagca #### Rps6kb2_ID372_10 --> 0 - 0 Original Alignment CCGCCCTTCACTGCAGAGAACCGGAAG-AAAACTATGGATAAAATCATTAAAGGGAAGCTGGTGCTGCCCCCCTACCTCACCCCGGATGCCCGGGACCTTGCCAAAAAG ggagatactataaggaactctttcaggtcattttaattttggcttctcagCCACCTTTCACTGCTGAGAACCGGAAGCAAAGCTACTGATAACATCATTAAAAGTAAGCTA---CTCCCCCCATATCTCATGCCCGATGCTCGGGACCTTGCCAAAAAGgtatgtctcactctcattcaaagaattataacctcctccttagaaatgga Alignment from CESAR CCGCCCTTCACTGCAGAGAACCGGAAG-AAAACTATGGATAAAATCATTAAAGGGAAGCTGGTGCTGCCCCCCTACCTCACCCCGGATGCCCGGGACCTTGCCAAAAAG ggagatactataaggaactctttcaggtcattttaattttggcttctcagCCACCTTTCACTGCTGAGAACCGGAAGCAAAGCTACTGATAACATCATTAAAAGTAAGCTA---CTCCCCCCATATCTCATGCCCGATGCTCGGGACCTTGCCAAAAAGgtatgtctcactctcattcaaagaattataacctcctccttagaaatgga Alignment from Spaln_aa2Genome CCGCCCTTCACTGCAGAGAACCGGAAG-AAAACTATGGATAAAATCATTAAAGGGAAGCTGGTGCTGCCCCCCTACCTCACCCCGGATGCCCGGGACCTTGCCAAAAAG ggagatactataaggaactctttcaggtcattttaattttggcttctcagCCACCTTTCACTGCTGAGAACCGGAAGcAAAGCTACTGATAACATCATTAAAAGTAAGCTA---CTCCCCCCATATCTCATGCCCGATGCTCGGGACCTTGCCAAAAAGgtatgtctcactctcattcaaagaattataacctcctccttagaaatgga Alignment from Spaln_nt2Genome CCGCCCTTCACTGCAGAGAACCGGAAGAAAA-CTATGGATAAAATCATTAAAGGGAAGCTGGTGCTGCCCCCCTACCTCACCCCGGATGCCCGGGACCTTGCCAAAAAG ggagatactataaggaactctttcaggtcattttaattttggcttctcagCCACCTTTCACTGCTGAGAACCGGAAGCAAAGCTACTGATAACATCATTAAAAGTAAGC---TACTCCCCCCATATCTCATGCCCGATGCTCGGGACCTTGCCAAAAAGgtatgtctcactctcattcaaagaattataacctcctccttagaaatgga Alignment from Pairagon CCGCCCTTCACTGCAGAGAACCGGAAG-AAAACTATGGATAAAATCATTAAAGGGAAGCTGGTGCTGCCCCCCTACCTCACCCCGGATGCCCGGGACCTTGCCAAAAAG ggagatactataaggaactctttcaggtcattttaattttggcttctcagCCACCTTTCACTGCTGAGAACCGGAAGCAAAGCTACTGATAACATCATTAAAAGTAAGC---TACTCCCCCCATATCTCATGCCCGATGCTCGGGACCTTGCCAAAAAGgtatgtctcactctcattcaaagaattataacctcctccttagaaatgga Alignment from Exonerate_protein2genome CCGCCCTTCACTGCAGAGAACCGGAAG-AAAACTATGGATAAAATCATTAAAGGGAAGCTGGTGCTGCCCCCCTACCTCACCCCGGATGCCCGGGACCTTGCCAAAAAG ggagatactataaggaactctttcaggtcattttaattttggcttctcagCCACCTTTCACTGCTGAGAACCGGAAGCAAAGCTACTGATAACATCATTAAAAGTAAGCTA---CTCCCCCCATATCTCATGCCCGATGCTCGGGACCTTGCCAAAAAGgtatgtctcactctcattcaaagaattataacctcctccttagaaatgga Alignment from Exonerate_coding2genome CCGCCCTTCACTGCAGAGAACCGGAAG-AAAACTATGGATAAAATCATTAAAGGGAAGCTGGTGCTGCCCCCCTACCTCACCCCGGATGCCCGGGACCTTGCCAAAAAG ggagatactataaggaactctttcaggtcattttaattttggcttctcagCCACCTTTCACTGCTGAGAACCGGAAGCAAAGCTACTGATAACATCATTAAAAGTAAGCTA---CTCCCCCCATATCTCATGCCCGATGCTCGGGACCTTGCCAAAAAGgtatgtctcactctcattcaaagaattataacctcctccttagaaatgga Alignment from GeneWise CCGCCCTTCACTGCAGAGAACCGGAAGAAAACT-ATGGATAAAATCATTAAAGGGAAGCTGGTGCTGCCCCCCTACCTCACCCCGGATGCCCGGGACCTTGCCAAAAAG ggagatactataaggaactctttcaggtcattttaattttggcttctcagCCACCTTTCACTGCTGAGAACCGGAAGCAAAGCTACTGATAACATCATTAAAAGTAAGCTA---CTCCCCCCATATCTCATGCCCGATGCTCGGGACCTTGCCAAAAAGgtatgtctcactctcattcaaagaattataacctcctccttagaaatgga #### Rps6kb2_ID379_3 --> 1 - 0 Original Alignment gACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTG-GGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG ctttggagtacataagatcttttccctctacacctacccaattcctacaggACAGTGGGACACTATGAAGAAGTGGAACTGACAGAGAGCAGTGTAAACCTTCGATCCTGAACGTATTGGGCCCCACTGCTTTGAGTTACTTAGTGTCCTGGTCAAAGGGGGTTATGGAAAGgtgaatccatcttactcccagcgacttcagcccaagtgcaagtgcaatta Alignment from CESAR gACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTG-GGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG ctttggagtacataagatcttttccctctacacctacccaattcctacaggACAGTGGGACACTATGAAGAAGTGGAACTGACAGAGAGCAGTGTAAACCTTCGATCCTGAACGTATTGGGCCCCACTGCTTTGAGTTACTTAGTGTCCTGGTCAAAGGGGGTTATGGAAAGgtgaatccatcttactcccagcgacttcagcccaagtgcaagtgcaatta Alignment from Spaln_aa2Genome GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTG-GGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG ctttggagtacataagatcttttccctctacacctacccaattcctacagGACAGTGGGACACTATGAAGAAGTGGAACTGACAGAGAGCAGTGTAAACCTTcGATCCTGAACGTATTGGGCCCCACTGCTTTGAGTTACTTAGTGTCCTGGTCAAAGGGGGTTATGGAAAGgtgaatccatcttactcccagcgacttcagcccaagtgcaagtgcaatta Alignment from Spaln_nt2Genome GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTGGG-TCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG ctttggagtacataagatcttttccctctacacctacccaattcctacagGACAGTGGGACACTATGAAGAAGTGGAACTGACAGAGAGCAGTGTAAACCTTCGATCCTGAACGTATTGGGCCCCACTGCTTTGAGTTACTTAGTGTCCTGGTCAAAGGGGGTTATGGAAAGgtgaatccatcttactcccagcgacttcagcccaagtgcaagtgcaatta Alignment from Pairagon GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACC-TGGGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG ctttggagtacataagatcttttccctctacacctacccaattcctacagGACAGTGGGACACTATGAAGAAGTGGAACTGACAGAGAGCAGTGTAAACCTTCGATCCTGAACGTATTGGGCCCCACTGCTTTGAGTTACTTAGTGTCCTGGTCAAAGGGGGTTATGGAAAGgtgaatccatcttactcccagcgacttcagcccaagtgcaagtgcaatta Alignment from Exonerate_protein2genome GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTG-GGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG ctttggagtacataagatcttttccctctacacctacccaattcctacagGACAGTGGGACACTATGAAGAAGTGGAACTGACAGAGAGCAGTGTAAACCTTCGATCCTGAACGTATTGGGCCCCACTGCTTTGAGTTACTTAGTGTCCTGGTCAAAGGGGGTTATGGAAAGgtgaatccatcttactcccagcgacttcagcccaagtgcaagtgcaatta Alignment from Exonerate_coding2genome GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTG-GGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG ctttggagtacataagatcttttccctctacacctacccaattcctacagGACAGTGGGACACTATGAAGAAGTGGAACTGACAGAGAGCAGTGTAAACCTTCGATCCTGAACGTATTGGGCCCCACTGCTTTGAGTTACTTAGTGTCCTGGTCAAAGGGGGTTATGGAAAGgtgaatccatcttactcccagcgacttcagcccaagtgcaagtgcaatta Alignment from GeneWise GACAGTGGGACACTATGAAGAAGTAGAGCTGACAGAGAGCAGCGTGAACCTG-GGTCCTGAGCGCATCGGGCCCCACTGCTTTGAGCTACTGAGTGTACTGGGCAAGGGGGGCTATGGCAAG ctttggagtacataagatcttttccctctacacctacccaattcctacagGACAGTGGGACACTATGAAGAAGTGGAACTGACAGAGAGCAGTGTAAACCTTCGATCCTGAACGTATTGGGCCCCACTGCTTTGAGTTACTTAGTGTCCTGGTCAAAGGGGGTTATGGAAAGgtgaatccatcttactcccagcgacttcagcccaagtgcaagtgcaatta #### Rps6kb2_ID380_2 --> 0 - 2 Original Alignment GACGTGTGTCCCCTTGGC-GAATTAAGGGCTGCTGGCCTGga gagctgatgttaggagaatgtatactttttctcaatttggtctgccctagGATGTGTGTCCCCTTGGCCAAACTAAGGGCTGCTGGCTTGgagtatgttgaggtctagtgtagaggctaggggtcggaaaaaggctttggag Alignment from CESAR GACGTGTGTCCCCTTGGC-GAATTAAGGGCTGCTGGCCTGga gagctgatgttaggagaatgtatactttttctcaatttggtctgccctagGATGTGTGTCCCCTTGGCCAAACTAAGGGCTGCTGGCTTGgagtatgttgaggtctagtgtagaggctaggggtcggaaaaaggctttggag Alignment from Spaln_aa2Genome GACGTGTGTCCCCTTGGCGAATTAAGGGCTGCTGGCCTGGAGACAG gagctgatgttaggagaatgtatactttttctcaatttggtctgccctagGATGTGTGTCCCCTTGGCCAAACTAAGGGCTGCTGGCTTGGAGTATgttgaggtctagtgtagaggctaggggtcggaaaaaggctttggag Alignment from Spaln_nt2Genome GACGTGTGTCCCCTTGGCGAAT-TAAGGGCTGCTGGCCTGGA gagctgatgttaggagaatgtatactttttctcaatttggtctgccctagGATGTGTGTCCCCTTGGCCAAACTAAGGGCTGCTGGCTTGGAgtatgttgaggtctagtgtagaggctaggggtcggaaaaaggctttggag Alignment from Pairagon GACGTGTGTCCCCTTGG-CGAATTAAGGGCTGCTGGCCTGGA gagctgatgttaggagaatgtatactttttctcaatttggtctgccctagGATGTGTGTCCCCTTGGCCAAACTAAGGGCTGCTGGCTTGGAgtatgttgaggtctagtgtagaggctaggggtcggaaaaaggctttggag Alignment from Exonerate_protein2genome GACGTGTGTCCCCTTGGCGAA-TTAAGGGCTGCTGGCCTGGA gagctgatgttaggagaatgtatactttttctcaatttggtctgccctagGATGTGTGTCCCCTTGGCCAAACTAAGGGCTGCTGGCTTGGAgtatgttgaggtctagtgtagaggctaggggtcggaaaaaggctttggag Alignment from Exonerate_coding2genome gagctgatgttaggagaatgtatactttttctcaatttggtctgccctaggatgtgtgtccccttggccaaactaagggctgctggcttggagtatgttgaggtctagtgtagaggctaggggtcggaaaaaggctttggag Alignment from GeneWise gagctgatgttaggagaatgtatactttttctcaatttggtctgccctaggatgtgtgtccccttggccaaactaagggctgctggcttggagtatgttgaggtctagtgtagaggctaggggtcggaaaaaggctttggag #### Rrp12_ID8295_28 --> 1 - 1 Original Alignment cATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGC-CGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTg agctggggttagatagccttattgtttggtttgtttgtttgtggttttagcATTGAGGAAATTTCAGCTGACTCAGAGGATGAGTTTGAGGAGGAACAAAGAGGCCGGGGCAAAGAGCAGCAGAAGTTGGCGCAGCAGAGGAGCCCGTGCGTGG---AAGGATGGGGGCGGT---GGGCCTCTCAATTTC------CCAAAGGTTGCACATCGTGTCCGGggtaagtaagtaaagccaactagggcaaagttacccccctttgttgttgga Alignment from CESAR cATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGC-CGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTg agctggggttagatagccttattgtttggtttgtttgtttgtggttttagcATTGAGGAAATTTCAGCTGACTCAGAGGATGAGTTTGAGGAGGAACAAAGAGGCCGGGGCAAAGAGCAGCAGAAGTTGGCGCAGCAGAGGAGCCCGTGCGTGG---AAGGATGGGGGCGGT---GGGCCTCTCAATTTC------CCAAAGGTTGCACATCGTGTCCGGggtaagtaagtaaagccaactagggcaaagttacccccctttgttgttgga Alignment from Spaln_aa2Genome CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGC-CGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG agctggggttagatagccttattgtttggtttgtttgtttgtggttttagCATTGAGGAAATTTCAGCTGACTCAGAGGATGAGTTTGAGGAGGAACAAAGAGGCCGGGGCAAAGAGCAGCAGAAGTTGGCGCAGCAGAGGAGCcCGTGCGTGG---AAGGATGGGGGCGGTGGG---CCTCTCAATTTC------CCAAAGGTTGCACATCGTGTCCGGGgtaagtaagtaaagccaactagggcaaagttacccccctttgttgttgga Alignment from Spaln_nt2Genome CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCCGG-GCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG agctggggttagatagccttattgtttggtttgtttgtttgtggttttagCATTGAGGAAATTTCAGCTGACTCAGAGGATGAGTTTGAGGAGGAACAAAGAGGCCGGGGCAAAGAGCAGCAGAAGTTGGCGCAGCAGAGGAGCCCGTGCGTG---GAAGGA---TGGGGGCGGTGGGCCTCTCAATTTC------CCAAAGGTTGCACATCGTGTCCGGGgtaagtaagtaaagccaactagggcaaagttacccccctttgttgttgga Alignment from Pairagon CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGCC---------------GGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG agctggggttagatagccttattgtttggtttgtttgtttgtggttttagCATTGAGGAAATTTCAGCTGACTCAGAGGATGAGTTTGAGGAGGAACAAAGAGGCCGGGGCAAAGAGCAGCAGAAGTTGGCGCAGCAGAGGAGCCCGTGCGTGGAAGGATGGG--------------------GGCGGTGGGCCTCTCAATTTC------CCAAAGGTTGCACATCGTGTCCGGGgtaagtaagtaaagccaactagggcaaagttacccccctttgttgttgga Alignment from Exonerate_protein2genome CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGC-CGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG agctggggttagatagccttattgtttggtttgtttgtttgtggttttagCATTGAGGAAATTTCAGCTGACTCAGAGGATGAGTTTGAGGAGGAACAAAGAGGCCGGGGCAAAGAGCAGCAGAAGTTGGCGCAGCAGAGGAGCCCGTGCGTGG---AAGGATGGGGGCGGTGGG---CCTCTCAATTTC------CCAAAGGTTGCACATCGTGTCCGGGgtaagtaagtaaagccaactagggcaaagttacccccctttgttgttgga Alignment from Exonerate_coding2genome CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGGAGC-CGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG agctggggttagatagccttattgtttggtttgtttgtttgtggttttagCATTGAGGAAATTTCAGCTGACTCAGAGGATGAGTTTGAGGAGGAACAAAGAGGCCGGGGCAAAGAGCAGCAGAAGTTGGCGCAGCAGAGGAGCCCGTGCGTGG---AAGGATGGGGGCGGTGGG---CCTCTCAATTTC------CCAAAGGTTGCACATCGTGTCCGGGgtaagtaagtaaagccaactagggcaaagttacccccctttgttgttgga Alignment from GeneWise CATTGAGGAGATTTTGGCTGACTCTGAGGATGAGGATGAGGAAGAAGAAAGAGGCCGGGGCAAGGAGCAGCGGAAGCTGGCACGACAGAGG-AGCCGGGCATGGCTGAAGGAAGGTGGTGGCGATGAGCCCCTCAACTTCCTGGATCCCAAGGTGGCCCATCGAGTCCTTG agctggggttagatagccttattgtttggtttgtttgtttgtggttttagCATTGAGGAAATTTCAGCTGACTCAGAGGATGAGTTTGAGGAGGAACAAAGAGGCCGGGGCAAAGAGCAGCAGAAGTTGGCGCAGCAGAGGAGCCCGTGCGTGG---AAGGATGGGGGCGGTGGG---CCTCTCAATTTC------CCAAAGGTTGCACATCGTGTCCGGGgtaagtaagtaaagccaactagggcaaagttacccccctttgttgttgga #### Rrp12_ID8302_21 --> 0 - 0 Original Alignment AGCAAGGTCCACGGTGTACAGAAGAAGGCCTACCGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAG-ACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG gttcttacttggccctgtttttacctggttcctattatttttttttccagAGTAAAGTACATGGAATACAGAAAAAGGCTTTCCGTGTCCTGGAAGAAGTGTGTGACAGCTCTCAGGGCCCAGCAGCTCACTTTTTGCAAAGCCATCGGGATGATCTGAAAAAGCACTCTCCTGGACTCACTTCGGACAACATCCTCACCTGCTAAAAGGgtgagtgctctgggttgacttaccacatgcaagtgagggtgtgtgcaagc Alignment from CESAR AGCAAGGTCCACGGTGTACAGAAGAAGGCCTACCGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAG-ACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG gttcttacttggccctgtttttacctggttcctattatttttttttccagAGTAAAGTACATGGAATACAGAAAAAGGCTTTCCGTGTCCTGGAAGAAGTGTGTGACAGCTCTCAGGGCCCAGCAGCTCACTTTTTGCAAAGCCATCGGGATGATCTGAAAAAGCACTCTCCTGGACTCACTTCGGACAACATCCTCACCTGCTAAAAGGgtgagtgctctgggttgacttaccacatgcaagtgagggtgtgtgcaagc Alignment from Spaln_aa2Genome AGCAAGGTCCACGGTGTACAGAAGAAGGCCTACCGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAG-ACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG gttcttacttggccctgtttttacctggttcctattatttttttttccagAGTAAAGTACATGGAATACAGAAAAAGGCTTTCCGTGTCCTGGAAGAAGTGTGTGACAGCTCTCAGGGCCCAGCAGCTCACTTTTTGCAAAGCCATCGGGATGATCTGAAAAAGcACTCTCCTGGACTCACTTCGGACAACATCCTCACCTGCTAAAAGGgtgagtgctctgggttgacttaccacatgcaagtgagggtgtgtgcaagc Alignment from Spaln_nt2Genome AGCAAGGTCCACGGTGTACAGAAGAAGGCCTACCGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAG-ACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG gttcttacttggccctgtttttacctggttcctattatttttttttccagAGTAAAGTACATGGAATACAGAAAAAGGCTTTCCGTGTCCTGGAAGAAGTGTGTGACAGCTCTCAGGGCCCAGCAGCTCACTTTTTGCAAAGCCATCGGGATGATCTGAAAAAGCACTCTCCTGGACTCACTTCGGACAACATCCTCACCTGCTAAAAGGgtgagtgctctgggttgacttaccacatgcaagtgagggtgtgtgcaagc Alignment from Pairagon AGCAAGGTCCACGGTGTACAGAAGAAGGCCTACCGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAG-ACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG gttcttacttggccctgtttttacctggttcctattatttttttttccagAGTAAAGTACATGGAATACAGAAAAAGGCTTTCCGTGTCCTGGAAGAAGTGTGTGACAGCTCTCAGGGCCCAGCAGCTCACTTTTTGCAAAGCCATCGGGATGATCTGAAAAAGCACTCTCCTGGACTCACTTCGGACAACATCCTCACCTGCTAAAAGGgtgagtgctctgggttgacttaccacatgcaagtgagggtgtgtgcaagc Alignment from Exonerate_protein2genome AGCAAGGTCCACGGTGTACAGAAGAAGGCCTACCGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAG-ACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG gttcttacttggccctgtttttacctggttcctattatttttttttccagAGTAAAGTACATGGAATACAGAAAAAGGCTTTCCGTGTCCTGGAAGAAGTGTGTGACAGCTCTCAGGGCCCAGCAGCTCACTTTTTGCAAAGCCATCGGGATGATCTGAAAAAGCACTCTCCTGGACTCACTTCGGACAACATCCTCACCTGCTAAAAGGgtgagtgctctgggttgacttaccacatgcaagtgagggtgtgtgcaagc Alignment from Exonerate_coding2genome AGCAAGGTCCACGGTGTACAGAAGAAGGCCTACCGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAG-ACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG gttcttacttggccctgtttttacctggttcctattatttttttttccagAGTAAAGTACATGGAATACAGAAAAAGGCTTTCCGTGTCCTGGAAGAAGTGTGTGACAGCTCTCAGGGCCCAGCAGCTCACTTTTTGCAAAGCCATCGGGATGATCTGAAAAAGCACTCTCCTGGACTCACTTCGGACAACATCCTCACCTGCTAAAAGGgtgagtgctctgggttgacttaccacatgcaagtgagggtgtgtgcaagc Alignment from GeneWise AGCAAGGTCCACGGTGTACAGAAGAAGGCCTACCGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAG-AAGACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG gttcttacttggccctgtttttacctggttcctattatttttttttccagAGTAAAGTACATGGAATACAGAAAAAGGCTTTCCGTGTCCTGGAAGAAGTGTGTGACAGCTCTCAGGGCCCAGCAGCTCACTTTTTGCAAAGCCATCGGGATGATCTGAAAAAGCACTCTCCTGGACTCACTTCGGACAACATCCTCACCTGCTAAAAGGgtgagtgctctgggttgacttaccacatgcaagtgagggtgtgtgcaagc #### Rrp12_ID8303_20 --> 1 - 0 Original Alignment aTTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAA-GCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ctgagaaaaagagatcacattgtcctcatgtgactgccagttacttgcagaTTGTCTGTTCTGGATCTGGTTGTGGCTCTGGCTCCTTATTCAGATGAACGCTGCTAGTAGTAAATTATACTCTAGCATCTGGCCCTACCTGGAGgtgagatatccctgtctccattcatggtatgatatgcccagatttcaccc Alignment from CESAR aTTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAA-GCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ctgagaaaaagagatcacattgtcctcatgtgactgccagttacttgcagaTTGTCTGTTCTGGATCTGGTTGTGGCTCTGGCTCCTTATTCAGATGAACGCTGCTAGTAGTAAATTATACTCTAGCATCTGGCCCTACCTGGAGgtgagatatccctgtctccattcatggtatgatatgcccagatttcaccc Alignment from Spaln_aa2Genome ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAA-GCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ctgagaaaaagagatcacattgtcctcatgtgactgccagttacttgcagATTGTCTGTTCTGGATCTGGTTGTGGCTCTGGCTCCTTATTCAGATGAAcGCTGCTAGTAGTAAATTATACTCTAGCATCTGGCCCTACCTGGAGgtgagatatccctgtctccattcatggtatgatatgcccagatttcaccc Alignment from Spaln_nt2Genome ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAA-GCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ctgagaaaaagagatcacattgtcctcatgtgactgccagttacttgcagATTGTCTGTTCTGGATCTGGTTGTGGCTCTGGCTCCTTATTCAGATGAACGCTGCTAGTAGTAAATTATACTCTAGCATCTGGCCCTACCTGGAGgtgagatatccctgtctccattcatggtatgatatgcccagatttcaccc Alignment from Pairagon ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAA-GCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ctgagaaaaagagatcacattgtcctcatgtgactgccagttacttgcagATTGTCTGTTCTGGATCTGGTTGTGGCTCTGGCTCCTTATTCAGATGAACGCTGCTAGTAGTAAATTATACTCTAGCATCTGGCCCTACCTGGAGgtgagatatccctgtctccattcatggtatgatatgcccagatttcaccc Alignment from Exonerate_protein2genome ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAA-GCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ctgagaaaaagagatcacattgtcctcatgtgactgccagttacttgcagATTGTCTGTTCTGGATCTGGTTGTGGCTCTGGCTCCTTATTCAGATGAACGCTGCTAGTAGTAAATTATACTCTAGCATCTGGCCCTACCTGGAGgtgagatatccctgtctccattcatggtatgatatgcccagatttcaccc Alignment from Exonerate_coding2genome ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAA-GCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ctgagaaaaagagatcacattgtcctcatgtgactgccagttacttgcagATTGTCTGTTCTGGATCTGGTTGTGGCTCTGGCTCCTTATTCAGATGAACGCTGCTAGTAGTAAATTATACTCTAGCATCTGGCCCTACCTGGAGgtgagatatccctgtctccattcatggtatgatatgcccagatttcaccc Alignment from GeneWise ATTGTCTGTCCTGGATCTGGTTGTGGCTTTGGCTCCTTACTCGGATGAA-GCTGCCATCAGTAAGCTATACTCTACCATCCGGCCCTACCTTGAG ctgagaaaaagagatcacattgtcctcatgtgactgccagttacttgcagATTGTCTGTTCTGGATCTGGTTGTGGCTCTGGCTCCTTATTCAGATGAACGCTGCTAGTAGTAAATTATACTCTAGCATCTGGCCCTACCTGGAGgtgagatatccctgtctccattcatggtatgatatgcccagatttcaccc #### Sart1_ID956_19 --> 0 - 2 Original Alignment CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGC-ACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATgc ataatatgtcagacctggtagcactgacttctatcatggttgtgtttcagCTTCGTAAGAAAATGAGCTCTAGTGATACACCCCTGGGCCACTGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAAAAGACACCTCATATTGTACTCAGTGGCAGTGGTAAGAGTATGAATgcgtaagtgtgggtaggagttggcagggtggatggtatgctgaataattagt Alignment from CESAR CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGC-ACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATgc ataatatgtcagacctggtagcactgacttctatcatggttgtgtttcagCTTCGTAAGAAAATGAGCTCTAGTGATACACCCCTGGGCCACTGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAAAAGACACCTCATATTGTACTCAGTGGCAGTGGTAAGAGTATGAATgcgtaagtgtgggtaggagttggcagggtggatggtatgctgaataattagt Alignment from Spaln_aa2Genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGC-ACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC ataatatgtcagacctggtagcactgacttctatcatggttgtgtttcagCTTCGTAAGAAAATGAGCTCTAGTGATACACCCCTGGGCcACTGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAAAAGACACCTCATATTGTACTCAGTGGCAGTGGTAAGAGTATGAATGCgtaagtgtgggtaggagttggcagggtggatggtatgctgaataattagt Alignment from Spaln_nt2Genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGC-ACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC ataatatgtcagacctggtagcactgacttctatcatggttgtgtttcagCTTCGTAAGAAAATGAGCTCTAGTGATACACCCCTGGGCCACTGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAAAAGACACCTCATATTGTACTCAGTGGCAGTGGTAAGAGTATGAATGCgtaagtgtgggtaggagttggcagggtggatggtatgctgaataattagt Alignment from Pairagon CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGG-CACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGC ataatatgtcagacctggtagcactgacttctatcatggttgtgtttcagCTTCGTAAGAAAATGAGCTCTAGTGATACACCCCTGGGCCACTGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAAAAGACACCTCATATTGTACTCAGTGGCAGTGGTAAGAGTATGAATGCgtaagtgtgggtaggagttggcagggtggatggtatgctgaataattagt Alignment from Exonerate_protein2genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGC-ACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCG ataatatgtcagacctggtagcactgacttctatcatggttgtgtttcagCTTCGTAAGAAAATGAGCTCTAGTGATACACCCCTGGGCCACTGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAAAAGACACCTCATATTGTACTCAGTGGCAGTGGTAAGAGTATGAATGCGtaagtgtgggtaggagttggcagggtggatggtatgctgaataattagt Alignment from Exonerate_coding2genome CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGC-ACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCG ataatatgtcagacctggtagcactgacttctatcatggttgtgtttcagCTTCGTAAGAAAATGAGCTCTAGTGATACACCCCTGGGCCACTGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAAAAGACACCTCATATTGTACTCAGTGGCAGTGGTAAGAGTATGAATGCGtaagtgtgggtaggagttggcagggtggatggtatgctgaataattagt Alignment from GeneWise CTCCTGAAGAAAATGAGCTCCAGTGACACGCCCCTGGGC-ACCGTGGCACTGCTCCAGGAGAAGCAGAAGGCCCAGAAGACACCGTATATCGTGCTCAGTGGCAGTGGCAAGAGCATGAATGCG ataatatgtcagacctggtagcactgacttctatcatggttgtgtttcagCTTCGTAAGAAAATGAGCTCTAGTGATACACCCCTGGGCCACTGTGGCATTGCTCCAGGAGAAGCAGAAGGCCCAAAAGACACCTCATATTGTACTCAGTGGCAGTGGTAAGAGTATGAATGCGtaagtgtgggtaggagttggcagggtggatggtatgctgaataattagt #### Sart1_ID958_17 --> 1 - 0 Original Alignment gGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGAT-GAGACGGGCAGGAAACTGACTCCCAAGGAG gaagtcctcagaggacctgatgaagctgctttcttttggggatgctgcaggGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACCCAGGACTTTAAGGAGAAAGATGGGTATAAGCCTGATGTTAAGATTGAATATGTAGATCAAGACAAGCAGGAAGCTGACTCCCAAAAAGgtacctcgagcctgtggaaatggtcaatccactggcaacagtgtatgtga Alignment from CESAR gGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGAT-GAGACGGGCAGGAAACTGACTCCCAAGGAG gaagtcctcagaggacctgatgaagctgctttcttttggggatgctgcaggGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACCCAGGACTTTAAGGAGAAAGATGGGTATAAGCCTGATGTTAAGATTGAATATGTAGATCAAGACAAGCAGGAAGCTGACTCCCAAAAAGgtacctcgagcctgtggaaatggtcaatccactggcaacagtgtatgtga Alignment from Spaln_aa2Genome GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAG-ACGGGCAGGAAACTGACTCCCAAGGAG gaagtcctcagaggacctgatgaagctgctttcttttggggatgctgcagGGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACCCAGGACTTTAAGGAGAAAGATGGGTATAAGCCTGATGTTAAGATTGAATATGTAGATCAAgACAAGCAGGAAGCTGACTCCCAAAAAGgtacctcgagcctgtggaaatggtcaatccactggcaacagtgtatgtga Alignment from Spaln_nt2Genome GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGA-GACGGGCAGGAAACTGACTCCCAAGGAG gaagtcctcagaggacctgatgaagctgctttcttttggggatgctgcagGGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACCCAGGACTTTAAGGAGAAAGATGGGTATAAGCCTGATGTTAAGATTGAATATGTAGATCAAGACAAGCAGGAAGCTGACTCCCAAAAAGgtacctcgagcctgtggaaatggtcaatccactggcaacagtgtatgtga Alignment from Pairagon GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGAT-GAGACGGGCAGGAAACTGACTCCCAAGGAG gaagtcctcagaggacctgatgaagctgctttcttttggggatgctgcagGGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACCCAGGACTTTAAGGAGAAAGATGGGTATAAGCCTGATGTTAAGATTGAATATGTAGATCAAGACAAGCAGGAAGCTGACTCCCAAAAAGgtacctcgagcctgtggaaatggtcaatccactggcaacagtgtatgtga Alignment from Exonerate_protein2genome GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAG-ACGGGCAGGAAACTGACTCCCAAGGAG gaagtcctcagaggacctgatgaagctgctttcttttggggatgctgcagGGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACCCAGGACTTTAAGGAGAAAGATGGGTATAAGCCTGATGTTAAGATTGAATATGTAGATCAAGACAAGCAGGAAGCTGACTCCCAAAAAGgtacctcgagcctgtggaaatggtcaatccactggcaacagtgtatgtga Alignment from Exonerate_coding2genome GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGATGAG-ACGGGCAGGAAACTGACTCCCAAGGAG gaagtcctcagaggacctgatgaagctgctttcttttggggatgctgcagGGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACCCAGGACTTTAAGGAGAAAGATGGGTATAAGCCTGATGTTAAGATTGAATATGTAGATCAAGACAAGCAGGAAGCTGACTCCCAAAAAGgtacctcgagcctgtggaaatggtcaatccactggcaacagtgtatgtga Alignment from GeneWise GGCCATTGATGACAAGTACAGCCGACGGGAGGAGTACAGGGGCTTCACCCAGGACTTCAAGGAGAAAGATGGCTACAAGCCTGATGTTAAGATTGAATACGTGGAT-GAGACGGGCAGGAAACTGACTCCCAAGGAG gaagtcctcagaggacctgatgaagctgctttcttttggggatgctgcagGGCCATTGATGACAAGTACAGTCAACAGGAGGAGTATAGGGACTTCACCCAGGACTTTAAGGAGAAAGATGGGTATAAGCCTGATGTTAAGATTGAATATGTAGATCAAGACAAGCAGGAAGCTGACTCCCAAAAAGgtacctcgagcctgtggaaatggtcaatccactggcaacagtgtatgtga #### Sart1_ID959_16 --> 2 - 2 Original Alignment gaCTGCTGGAGACCACAGTA-CAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGat gctccaagaattcaacctgagcccaggacctaactcggatccctctccaggaCTGCTAGAAACCACAGTACCAAAAGGTTGCCTGGGTGGAGGCTCCCAATAGGACCTTGCCTTCAGCAGTGTACTGCATAGAGGATAAGatgtacagtttatcaaggcaagatgccatagtaactgctatgaacatgggga Alignment from CESAR gaCTGCTGGAGACCACAGTA-CAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGat gctccaagaattcaacctgagcccaggacctaactcggatccctctccaggaCTGCTAGAAACCACAGTACCAAAAGGTTGCCTGGGTGGAGGCTCCCAATAGGACCTTGCCTTCAGCAGTGTACTGCATAGAGGATAAGatgtacagtttatcaaggcaagatgccatagtaactgctatgaacatgggga Alignment from Spaln_aa2Genome GACTGCTGGAGACCACAGTA-CAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT gctccaagaattcaacctgagcccaggacctaactcggatccctctccagGACTGCTAGAAACCACAGTAcCAAAAGGTTGCCTGGGTGGAGGCTCCCAATAGGACCTTGCCTTCAGCAGTGTACTGCATAGAGGATAAGATgtacagtttatcaaggcaagatgccatagtaactgctatgaacatgggga Alignment from Spaln_nt2Genome GACTGCTGGAGACCACAGTAC-AAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT gctccaagaattcaacctgagcccaggacctaactcggatccctctccagGACTGCTAGAAACCACAGTACCAAAAGGTTGCCTGGGTGGAGGCTCCCAATAGGACCTTGCCTTCAGCAGTGTACTGCATAGAGGATAAGATgtacagtttatcaaggcaagatgccatagtaactgctatgaacatgggga Alignment from Pairagon GACTGCTGGAGACCACAGTA-CAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT gctccaagaattcaacctgagcccaggacctaactcggatccctctccagGACTGCTAGAAACCACAGTACCAAAAGGTTGCCTGGGTGGAGGCTCCCAATAGGACCTTGCCTTCAGCAGTGTACTGCATAGAGGATAAGATgtacagtttatcaaggcaagatgccatagtaactgctatgaacatgggga Alignment from Exonerate_protein2genome GACTGCTGGAGACCACAGTA-CAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT gctccaagaattcaacctgagcccaggacctaactcggatccctctccagGACTGCTAGAAACCACAGTACCAAAAGGTTGCCTGGGTGGAGGCTCCCAATAGGACCTTGCCTTCAGCAGTGTACTGCATAGAGGATAAGATgtacagtttatcaaggcaagatgccatagtaactgctatgaacatgggga Alignment from Exonerate_coding2genome GACTGCTGGAGACCACAGTA-CAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT gctccaagaattcaacctgagcccaggacctaactcggatccctctccagGACTGCTAGAAACCACAGTACCAAAAGGTTGCCTGGGTGGAGGCTCCCAATAGGACCTTGCCTTCAGCAGTGTACTGCATAGAGGATAAGATgtacagtttatcaaggcaagatgccatagtaactgctatgaacatgggga Alignment from GeneWise GACTGCTGGAGACCACA-GTACAAAAGGTGGCCCGGGTGAAGGCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT gctccaagaattcaacctgagcccaggacctaactcggatccctctccagGACTGCTAGAAACCACAGTACCAAAAGGTTGCCTGGGTGGAGGCTCCCAATAGGACCTTGCCTTCAGCAGTGTACTGCATAGAGGATAAGATgtacagtttatcaaggcaagatgccatagtaactgctatgaacatgggga #### Sart1_ID961_14 --> 0 - 0 Original Alignment GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAG-CAGCATCAGGAT gtagcaggtagggtagggtctgtccatgtattgttggggtttccttgcagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACAGTCAACCTGGATGATGAGAAGCCAGCCTCAGGATgtaagcactaatgaccatgggtgaaggggatccagggtgactgttcagta Alignment from CESAR GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAG-CAGCATCAGGAT gtagcaggtagggtagggtctgtccatgtattgttggggtttccttgcagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACAGTCAACCTGGATGATGAGAAGCCAGCCTCAGGATgtaagcactaatgaccatgggtgaaggggatccagggtgactgttcagta Alignment from Spaln_aa2Genome GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAG-CAGCATCAGGAT gtagcaggtagggtagggtctgtccatgtattgttggggtttccttgcagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACAGTCAACCTGGATGATGAGAAGcCAGCCTCAGGATgtaagcactaatgaccatgggtgaaggggatccagggtgactgttcagta Alignment from Spaln_nt2Genome GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGC-AGCATCAGGAT gtagcaggtagggtagggtctgtccatgtattgttggggtttccttgcagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACAGTCAACCTGGATGATGAGAAGCCAGCCTCAGGATgtaagcactaatgaccatgggtgaaggggatccagggtgactgttcagta Alignment from Pairagon GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAG-CAGCATCAGGAT gtagcaggtagggtagggtctgtccatgtattgttggggtttccttgcagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACAGTCAACCTGGATGATGAGAAGCCAGCCTCAGGATgtaagcactaatgaccatgggtgaaggggatccagggtgactgttcagta Alignment from Exonerate_protein2genome GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAG-CAGCATCAGGAT gtagcaggtagggtagggtctgtccatgtattgttggggtttccttgcagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACAGTCAACCTGGATGATGAGAAGCCAGCCTCAGGATgtaagcactaatgaccatgggtgaaggggatccagggtgactgttcagta Alignment from Exonerate_coding2genome GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAG-CAGCATCAGGAT gtagcaggtagggtagggtctgtccatgtattgttggggtttccttgcagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACAGTCAACCTGGATGATGAGAAGCCAGCCTCAGGATgtaagcactaatgaccatgggtgaaggggatccagggtgactgttcagta Alignment from GeneWise GACTTTGAAAGGGATGAGGAGCGCTCGGCCAACGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACCGTCAACCTGGATGAGGAGAAGCAG-CATCAGGAT gtagcaggtagggtagggtctgtccatgtattgttggggtttccttgcagGACTTTGAGAGGGATGAGGAGCACTCAGCCAATGGTGGCTCTGAATCAGATGGGGAAGAGAACATTGGCTGGAGCACAGTCAACCTGGATGATGAGAAGCCAGCCTCAGGATgtaagcactaatgaccatgggtgaaggggatccagggtgactgttcagta #### Sart1_ID964_11 --> 1 - 1 Original Alignment gCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATG-GACATCAGTGATGAAg ggggtaattcaaaagacataatttacacactgacaactatgtccccacaggCTTCGGGGCCGGGGTAGGCACCAAGTTCCC------AAGGAGGAGACGCTTGAGGATGAGGAGAAGGACCTCGTGGCCAAGCCACCACCATCAGATGACACTCGAGTC------ATGCGACATCAGTGATGAAggtgagcggttgagtaataggggccagggtaaatctgcaggcaagggcact Alignment from CESAR gCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATG-GACATCAGTGATGAAg ggggtaattcaaaagacataatttacacactgacaactatgtccccacaggCTTCGGGGCCGGGGTAGGCACCAAGTTCCC------AAGGAGGAGACGCTTGAGGATGAGGAGAAGGACCTCGTGGCCAAGCCACCACCATCAGATGACACTCGAGTC------ATGCGACATCAGTGATGAAggtgagcggttgagtaataggggccagggtaaatctgcaggcaagggcact Alignment from Spaln_aa2Genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG ggggtaattcaaaagacataatttacacactgacaactatgtccccacagGCTTCGGGGCCGGGGTAGGCACCAAGTTCCC------AAGGAGGAGACGCTTGAGGATGAGGAGAAGGACCTCGTGGCCAAGCCACCACCATCAGATGACACTCGAGTCA-----TGCGACATCAGTGATGAAGgtgagcggttgagtaataggggccagggtaaatctgcaggcaagggcact Alignment from Spaln_nt2Genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATG-GACATCAGTGATGAAG ggggtaattcaaaagacataatttacacactgacaactatgtccccacagGCTTCGGGGCCGGGGTAGGCACCAAGTTCC------CAAGGAGGAGACGCTTGAGGATGAGGAGAAGGACCTCGTGGCCAAGCCACCACCATCAGATGACACTCGAGT------CATGCGACATCAGTGATGAAGgtgagcggttgagtaataggggccagggtaaatctgcaggcaagggcact Alignment from Pairagon GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATG-GACATCAGTGATGAAG ggggtaattcaaaagacataatttacacactgacaactatgtccccacagGCTTCGGGGCCGGGGTAGGCACCAAGTTCCC------AAGGAGGAGACGCTTGAGGATGAGGAGAAGGACCTCGTGGCCAAGCCACCACCATCAGATGACACTCGAGT------CATGCGACATCAGTGATGAAGgtgagcggttgagtaataggggccagggtaaatctgcaggcaagggcact Alignment from Exonerate_protein2genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGA ggggtaattcaaaagacataatttacacactgacaactatgtccccacagGCTTCGGGGCCGGGGTAGGCACCAAGTTCCC------AAGGAGGAGACGCTTGAGGATGAGGAGAAGGACCTCGTGGCCAAGCCACCACCATCAGATGACACTCGAGTCATGCGACATCAGTGATGAAGgtgagcggttgagtaataggggccagggtaaatctgcaggcaagggcact Alignment from Exonerate_coding2genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGA ggggtaattcaaaagacataatttacacactgacaactatgtccccacagGCTTCGGGGCCGGGGTAGGCACCAAGTTCCC------AAGGAGGAGACGCTTGAGGATGAGGAGAAGGACCTCGTGGCCAAGCCACCACCATCAGATGACACTCGAGTCATGCGACATCAGTGATGAAGgtgagcggttgagtaataggggccagggtaaatctgcaggcaagggcact Alignment from GeneWise GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGA ------ ggggtaattcaaaagacataatttacacactgacaactatgtccccacagGCTTCGGGGCCGGGGTAGGCACCAAGTTCCCAAG------GAGGAGACGCTTGAGGATGAGGAGAAGGACCTCGTGGCCAAGCCACCACCATCAGATGACACTCGAgtcatgcgacatcagtgatgaaggtgagcggttgagtaataggggccagggtaaatctgcaggcaagGGCACT #### Sart1_ID965_10 --> 0 - 2 Original Alignment GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGAC-CAGACTCAGGATGGGGACTTTGGATCCag tctaaaactaagagggcatactcactcccttggttttacctttcttgcagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAAAAAACCAGAAAGAAGGAGCAGGAGGTGATAATGCGGGCTGATGACTTACTGCCTCTGGGTGATCCAGACACAGGATGGG---TTTGGATCAaggtgagtatggatgcagtagtgggtatgaggtggggtaattcaaaagacat Alignment from CESAR GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGAC-CAGACTCAGGATGGGGACTTTGGATCCag tctaaaactaagagggcatactcactcccttggttttacctttcttgcagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAAAAAACCAGAAAGAAGGAGCAGGAGGTGATAATGCGGGCTGATGACTTACTGCCTCTGGGTGATCCAGACACAGGATGGG---TTTGGATCAaggtgagtatggatgcagtagtgggtatgaggtggggtaattcaaaagacat Alignment from Spaln_aa2Genome GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGAC-CAGACTCAGGATGGGGACTTTGGATCCAG tctaaaactaagagggcatactcactcccttggttttacctttcttgcagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAAAAAACCAGAAAGAAGGAGCAGGAGGTGATAATGCGGGCTGATGACTTACTGCCTCTGGGTGATcCAGACACAGGATGGG---TTTGGATCAAGgtgagtatggatgcagtagtgggtatgaggtggggtaattcaaaagacat Alignment from Spaln_nt2Genome GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGA-CCAGACTCAGGATGGGGACTTTGGATCCAG tctaaaactaagagggcatactcactcccttggttttacctttcttgcagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAAAAAACCAGAAAGAAGGAGCAGGAGGTGATAATGCGGGCTGATGACTTACTGCCTCTGGGTGATCCAGACACAGGATGGG---TTTGGATCAAGgtgagtatggatgcagtagtgggtatgaggtggggtaattcaaaagacat Alignment from Pairagon GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGA-CCAGACTCAGGATGGGGACTTTGGATCCAG tctaaaactaagagggcatactcactcccttggttttacctttcttgcagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAAAAAACCAGAAAGAAGGAGCAGGAGGTGATAATGCGGGCTGATGACTTACTGCCTCTGGGTGATCCAGACACAGGATGGG---TTTGGATCAAGgtgagtatggatgcagtagtgggtatgaggtggggtaattcaaaagacat Alignment from Exonerate_protein2genome GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGAC-CAGACTCAGGATGGGGACTTTGGATCCAG tctaaaactaagagggcatactcactcccttggttttacctttcttgcagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAAAAAACCAGAAAGAAGGAGCAGGAGGTGATAATGCGGGCTGATGACTTACTGCCTCTGGGTGATCCAGACACAGGATGGG---TTTGGATCAAGgtgagtatggatgcagtagtgggtatgaggtggggtaattcaaaagacat Alignment from Exonerate_coding2genome GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGAC-CAGACTCAGGATGGGGACTTTGGATCCAG tctaaaactaagagggcatactcactcccttggttttacctttcttgcagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAAAAAACCAGAAAGAAGGAGCAGGAGGTGATAATGCGGGCTGATGACTTACTGCCTCTGGGTGATCCAGACACAGGATGGG---TTTGGATCAAGgtgagtatggatgcagtagtgggtatgaggtggggtaattcaaaagacat Alignment from GeneWise GTGACCTTCAAGAAGACCAAACGGAGAGTGAAGAAAATCCGAAAGAAGGAGAAGGAGGTGATAATGCGGGCAGATGACTTGCTGCCCCTGGGCGAC-CAGACTCAGGATGGGGACTTTGGATCCAG tctaaaactaagagggcatactcactcccttggttttacctttcttgcagGTGACCTTCAAGAAGACCAAGCGGAGAGTGAAAAAAACCAGAAAGAAGGAGCAGGAGGTGATAATGCGGGCTGATGACTTACTGCCTCTGGGTGATCCAGACACAGGATGGG---TTTGGATCAAGgtgagtatggatgcagtagtgggtatgaggtggggtaattcaaaagacat #### Sart1_ID966_9 --> 0 - 0 Original Alignment ACAG CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAG-GAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG ACAGgtaagtctggtaagtctgggagaatttccttttttttttttaacagCAAAAACCTCGCTCAATTCTAGCTAAATATGATGAACGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAAGGTGGGATGGCTGATGGACTGAGGGAACAAGAGCTAGAAGAAATCCGCACCAAGCTACGACTACCAGCCCAATCTCTAAGTTCCATGGGCCCCAGGCTTGCTTCTCAGTATCTCAGTCCTGAAGAGATGgtgaggcaccagtatgtgatcatatattcagcaggcagctaatccaagca Alignment from CESAR ACAG CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAG-GAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG ACAGgtaagactggtaagtctgggagaatttccttttttttttttaacagCAAAAACCTCGCTCAATTCTAGCTAAATATGATGAACGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAAGGTGGGATGGCTGATGGACTGAGGGAACAAGAGCTAGAAGAAATCCGCACCAAGCTACGACTACCAGCCCAATCTCTAAGTTCCATGGGCCCCAGGCTTGCTTCTCAGTATCTCAGTCCTGAAGAGATGgtgaggcaccagtatgtgatcatatattcagcaggcagctaatccaagca Alignment from Spaln_aa2Genome ACAG CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAG-GAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG ACAGgtaagtctggtaagtctgggagaatttccttttttttttttaacagCAAAAACCTCGCTCAATTCTAGCTAAATATGATGAAcGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAAGGTGGGATGGCTGATGGACTGAGGGAACAAGAGCTAGAAGAAATCCGCACCAAGCTACGACTACCAGCCCAATCTCTAAGTTCCATGGGCCCCAGGCTTGCTTCTCAGTATCTCAGTCCTGAAGAGATGgtgaggcaccagtatgtgatcatatattcagcaggcagctaatccaagca Alignment from Spaln_nt2Genome ACAG CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAG-GAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG ACAGgtaagtctggtaagtctgggagaatttccttttttttttttaacagCAAAAACCTCGCTCAATTCTAGCTAAATATGATGAACGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAAGGTGGGATGGCTGATGGACTGAGGGAACAAGAGCTAGAAGAAATCCGCACCAAGCTACGACTACCAGCCCAATCTCTAAGTTCCATGGGCCCCAGGCTTGCTTCTCAGTATCTCAGTCCTGAAGAGATGgtgaggcaccagtatgtgatcatatattcagcaggcagctaatccaagca Alignment from Pairagon ACAG CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAG-GAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG ACAGgtaagtctggtaagtctgggagaatttccttttttttttttaacagCAAAAACCTCGCTCAATTCTAGCTAAATATGATGAACGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAAGGTGGGATGGCTGATGGACTGAGGGAACAAGAGCTAGAAGAAATCCGCACCAAGCTACGACTACCAGCCCAATCTCTAAGTTCCATGGGCCCCAGGCTTGCTTCTCAGTATCTCAGTCCTGAAGAGATGgtgaggcaccagtatgtgatcatatattcagcaggcagctaatccaagca Alignment from Exonerate_protein2genome ACAG CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAG-GAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG ACAGgtaagtctggtaagtctgggagaatttccttttttttttttaacagCAAAAACCTCGCTCAATTCTAGCTAAATATGATGAACGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAAGGTGGGATGGCTGATGGACTGAGGGAACAAGAGCTAGAAGAAATCCGCACCAAGCTACGACTACCAGCCCAATCTCTAAGTTCCATGGGCCCCAGGCTTGCTTCTCAGTATCTCAGTCCTGAAGAGATGgtgaggcaccagtatgtgatcatatattcagcaggcagctaatccaagca Alignment from Exonerate_coding2genome ACAG CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAG-GAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG ACAGgtaagtctggtaagtctgggagaatttccttttttttttttaacagCAAAAACCTCGCTCAATTCTAGCTAAATATGATGAACGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAAGGTGGGATGGCTGATGGACTGAGGGAACAAGAGCTAGAAGAAATCCGCACCAAGCTACGACTACCAGCCCAATCTCTAAGTTCCATGGGCCCCAGGCTTGCTTCTCAGTATCTCAGTCCTGAAGAGATGgtgaggcaccagtatgtgatcatatattcagcaggcagctaatccaagca Alignment from GeneWise ACAG CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAG-GAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG ACAGgtaagtctggtaagtctgggagaatttccttttttttttttaacagCAAAAACCTCGCTCAATTCTAGCTAAATATGATGAACGAATTAGAGGGTGAGCGACCACATTCCTTCCGTCTTGAGCAAGGTGGGATGGCTGATGGACTGAGGGAACAAGAGCTAGAAGAAATCCGCACCAAGCTACGACTACCAGCCCAATCTCTAAGTTCCATGGGCCCCAGGCTTGCTTCTCAGTATCTCAGTCCTGAAGAGATGgtgaggcaccagtatgtgatcatatattcagcaggcagctaatccaagca #### Sart1_ID968_7 --> 0 - 1 Original Alignment GACCTGTACAGTGCCCGGGACCTG-CAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAg cccagattcagcttgtacctggtttttgtctgttcttctctattccgcagGACCTGTACAGTGCCCGAGACCTGCCAAGGCCTCACTGTGGAACATGCTATTGATTCTTTTCAAGAAGGGGAGACTGTGGTTCTCACCCTCAAAGACAAAggtaagtggtatctgggatgcttaggctagaatacgattgcttatttacat Alignment from CESAR GACCTGTACAGTGCCCGGGACCTG-CAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAg cccagattcagcttgtacctggtttttgtctgttcttctctattccgcagGACCTGTACAGTGCCCGAGACCTGCCAAGGCCTCACTGTGGAACATGCTATTGATTCTTTTCAAGAAGGGGAGACTGTGGTTCTCACCCTCAAAGACAAAggtaagtggtatctgggatgcttaggctagaatacgattgtcactctgact Alignment from Spaln_aa2Genome GACCTGTACAGTGCCCGGGACCTG-CAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG cccagattcagcttgtacctggtttttgtctgttcttctctattccgcagGACCTGTACAGTGCCCGAGACCTGcCAAGGCCTCACTGTGGAACATGCTATTGATTCTTTTCAAGAAGGGGAGACTGTGGTTCTCACCCTCAAAGACAAAGgtaagtggtatctgggatgcttaggctagaatacgattgcttatttacat Alignment from Spaln_nt2Genome GACCTGTACAGTGCCCGGGACCTG-CAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG cccagattcagcttgtacctggtttttgtctgttcttctctattccgcagGACCTGTACAGTGCCCGAGACCTGCCAAGGCCTCACTGTGGAACATGCTATTGATTCTTTTCAAGAAGGGGAGACTGTGGTTCTCACCCTCAAAGACAAAGgtaagtggtatctgggatgcttaggctagaatacgattgcttatttacat Alignment from Pairagon GACCTGTACAGTGCCCGGGACCTG-CAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG cccagattcagcttgtacctggtttttgtctgttcttctctattccgcagGACCTGTACAGTGCCCGAGACCTGCCAAGGCCTCACTGTGGAACATGCTATTGATTCTTTTCAAGAAGGGGAGACTGTGGTTCTCACCCTCAAAGACAAAGgtaagtggtatctgggatgcttaggctagaatacgattgcttatttacat Alignment from Exonerate_protein2genome GACCTGTACAGTGCCCGGGACCTG-CAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG cccagattcagcttgtacctggtttttgtctgttcttctctattccgcagGACCTGTACAGTGCCCGAGACCTGCCAAGGCCTCACTGTGGAACATGCTATTGATTCTTTTCAAGAAGGGGAGACTGTGGTTCTCACCCTCAAAGACAAAGgtaagtggtatctgggatgcttaggctagaatacgattgcttatttacat Alignment from Exonerate_coding2genome GACCTGTACAGTGCCCGGGACCTG-CAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG cccagattcagcttgtacctggtttttgtctgttcttctctattccgcagGACCTGTACAGTGCCCGAGACCTGCCAAGGCCTCACTGTGGAACATGCTATTGATTCTTTTCAAGAAGGGGAGACTGTGGTTCTCACCCTCAAAGACAAAGgtaagtggtatctgggatgcttaggctagaatacgattgcttatttacat Alignment from GeneWise GACCTGTACAGTGCCCGGGAC-CTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAGACTGTGGTCCTCACCCTCAAGGACAAAG cccagattcagcttgtacctggtttttgtctgttcttctctattccgcagGACCTGTACAGTGCCCGAGACCTGCCAAGGCCTCACTGTGGAACATGCTATTGATTCTTTTCAAGAAGGGGAGACTGTGGTTCTCACCCTCAAAGACAAAGgtaagtggtatctgggatgcttaggctagaatacgattgcttatttacat #### Sart1_ID969_6 --> 0 - 0 Original Alignment GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAG-CAGAGGCGACAG gcctaatcagggtgacttgttaatttttcccactcccttgtttcctgcagGCTAAGCTGTTGGAGGAAATGGGTCAAGAGTTTGGTGTGAGCACTTTAGTTGAGGAGGAGTTTGAGCCAGAAGCGACAGgtatctacccaattaccggaattatctggtagtcaccatttcaattttgg Alignment from CESAR GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAG-CAGAGGCGACAG gcctaatcagggtgacttgttaatttttcccactcccttgtttcctgcagGCTAAGCTGTTGGAGGAAATGGGTCAAGAGTTTGGTGTGAGCACTTTAGTTGAGGAGGAGTTTGAGCCAGAAGCGACAGgtatctacccaattaccggaattatctggtagtcaccatttcaattttgg Alignment from Spaln_aa2Genome GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGCAGAGGCGACAG gcctaatcagggtgacttgttaatttttcccactcccttgtttcctgcagGCTAAGCTGTTGGAGGAAATGGGTCAAGAGTTTGGTGTGAGCACTTTAGTTGAGGAGGAGTTTGAGCCA------GAAgcgacaggtatctacccaattaccggaattatctggtagtcaccatttcaattttgg Alignment from Spaln_nt2Genome GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAGC-AGAGGCGACAG gcctaatcagggtgacttgttaatttttcccactcccttgtttcctgcagGCTAAGCTGTTGGAGGAAATGGGTCAAGAGTTTGGTGTGAGCACTTTAGTTGAGGAGGAGTTTGAGCCAGAAGCGACAGgtatctacccaattaccggaattatctggtagtcaccatttcaattttgg Alignment from Pairagon GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAG-CAGAGGCGACAG gcctaatcagggtgacttgttaatttttcccactcccttgtttcctgcagGCTAAGCTGTTGGAGGAAATGGGTCAAGAGTTTGGTGTGAGCACTTTAGTTGAGGAGGAGTTTGAGCCAGAAGCGACAGgtatctacccaattaccggaattatctggtagtcaccatttcaattttgg Alignment from Exonerate_protein2genome GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAG-CAGAGGCGACAG gcctaatcagggtgacttgttaatttttcccactcccttgtttcctgcagGCTAAGCTGTTGGAGGAAATGGGTCAAGAGTTTGGTGTGAGCACTTTAGTTGAGGAGGAGTTTGAGCCAGAAGCGACAGgtatctacccaattaccggaattatctggtagtcaccatttcaattttgg Alignment from Exonerate_coding2genome GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTTGAG-CAGAGGCGACAG gcctaatcagggtgacttgttaatttttcccactcccttgtttcctgcagGCTAAGCTGTTGGAGGAAATGGGTCAAGAGTTTGGTGTGAGCACTTTAGTTGAGGAGGAGTTTGAGCCAGAAGCGACAGgtatctacccaattaccggaattatctggtagtcaccatttcaattttgg Alignment from GeneWise GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAGTTT-GAGCAGAGGCGACAG gcctaatcagggtgacttgttaatttttcccactcccttgtttcctgcagGCTAAGCTGTTGGAGGAAATGGGTCAAGAGTTTGGTGTGAGCACTTTAGTTGAGGAGGAGTTTGAGCCAGAAGCGACAGgtatctacccaattaccggaattatctggtagtcaccatttcaattttgg #### Sec31b_ID9029_23 --> 0 - 0 Original Alignment CAACTCCAGCCA-CTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtggaatttccattcagttgggatctccctgtttccctttggcagCAACTACAGCCACTTGCCTCCTGAGAGGACAGAGAAAGAGTCGCCTGCAGAGCATCAGTGTGTTAAGGACAGTTTTGATGCACTCCTCCAGCACTGTTCCTTGACTGCAACCAGCCTTgtaggtacagtctttgtttcttcaagctctgaactgttcagggccacagc Alignment from CESAR CAACTCCAGCCA-CTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtggaatttccattcagttgggatctccctgtttccctttggcagCAACTACAGCCACTTGCCTCCTGAGAGGACAGAGAAAGAGTCGCCTGCAGAGCATCAGTGTGTTAAGGACAGTTTTGATGCACTCCTCCAGCACTGTTCCTTGACTGCAACCAGCCTTgtaggtacagtctttgtttcttcaagctctgaactgttcagggccacagc Alignment from Spaln_aa2Genome CAACTCCAGCCACTG-CCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtggaatttccattcagttgggatctccctgtttccctttggcagCAACTACAGCCACTTgCCTCCTGAGAGGACAGAGAAAGAGTCGCCTGCAGAGCATCAGTGTGTTAAGGACAGTTTTGATGCACTCCTCCAGCACTGTTCCTTGACTGCAACCAGCCTTgtaggtacagtctttgtttcttcaagctctgaactgttcagggccacagc Alignment from Spaln_nt2Genome CAACTCCAGCCACT-GCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtggaatttccattcagttgggatctccctgtttccctttggcagCAACTACAGCCACTTGCCTCCTGAGAGGACAGAGAAAGAGTCGCCTGCAGAGCATCAGTGTGTTAAGGACAGTTTTGATGCACTCCTCCAGCACTGTTCCTTGACTGCAACCAGCCTTgtaggtacagtctttgtttcttcaagctctgaactgttcagggccacagc Alignment from Pairagon CAACTCCAGCCAC-TGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtggaatttccattcagttgggatctccctgtttccctttggcagCAACTACAGCCACTTGCCTCCTGAGAGGACAGAGAAAGAGTCGCCTGCAGAGCATCAGTGTGTTAAGGACAGTTTTGATGCACTCCTCCAGCACTGTTCCTTGACTGCAACCAGCCTTgtaggtacagtctttgtttcttcaagctctgaactgttcagggccacagc Alignment from Exonerate_protein2genome CAACTCCAGCCA-CTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtggaatttccattcagttgggatctccctgtttccctttggcagCAACTACAGCCACTTGCCTCCTGAGAGGACAGAGAAAGAGTCGCCTGCAGAGCATCAGTGTGTTAAGGACAGTTTTGATGCACTCCTCCAGCACTGTTCCTTGACTGCAACCAGCCTTgtaggtacagtctttgtttcttcaagctctgaactgttcagggccacagc Alignment from Exonerate_coding2genome CAACTCCAGCCA-CTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtggaatttccattcagttgggatctccctgtttccctttggcagCAACTACAGCCACTTGCCTCCTGAGAGGACAGAGAAAGAGTCGCCTGCAGAGCATCAGTGTGTTAAGGACAGTTTTGATGCACTCCTCCAGCACTGTTCCTTGACTGCAACCAGCCTTgtaggtacagtctttgtttcttcaagctctgaactgttcagggccacagc Alignment from GeneWise CAACTCCAGCCA-CTGCCTCCTGAGAGGACAGAGAAGGAGCTGCCCCCAGAGCATCAGTGCGTGAAGGACAGCTTTGAGGCACTCCTTCAGCGCTGTTCCCTGACCGCCACTGACCTT gcatagtggaatttccattcagttgggatctccctgtttccctttggcagCAACTACAGCCACTTGCCTCCTGAGAGGACAGAGAAAGAGTCGCCTGCAGAGCATCAGTGTGTTAAGGACAGTTTTGATGCACTCCTCCAGCACTGTTCCTTGACTGCAACCAGCCTTgtaggtacagtctttgtttcttcaagctctgaactgttcagggccacagc #### Sec31b_ID9037_15 --> 0 - 1 Original Alignment CTTCTAGCCTGTGTTGTAAAGAAGAATTGG-AAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTg taaccatgctatgcaccagcctgagggtccccaacatttctgtctttcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGCAAAGACCTTGTGTGTGCATTTCGACTG---AACTGGAGAGAGACACTGGCCTTGCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTggtaggtgtgacatcaacatgattcattgtactggtgccaagtagaggcaa Alignment from CESAR CTTCTAGCCTGTGTTGTAAAGAAGAATTGG-AAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTg taaccatgctatgcaccagcctgagggtccccaacatttctgtctttcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGCAAAGACCTTGTGTGTGCATTTCGACTG---AACTGGAGAGAGACACTGGCCTTGCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTggtaggtgtgacatcaacatgattcattgtactggtgccaagtagaggcaa Alignment from Spaln_aa2Genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGG-AAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG taaccatgctatgcaccagcctgagggtccccaacatttctgtctttcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGcAAAGACCTTGTGTGTGCATTTCGACTG---AACTGGAGAGAGACACTGGCCTTGCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaggtgtgacatcaacatgattcattgtactggtgccaagtagaggcaa Alignment from Spaln_nt2Genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGG-AAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG taaccatgctatgcaccagcctgagggtccccaacatttctgtctttcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGCAAAGACCTTGTGTGTGCATTTCGACT---GAACTGGAGAGAGACACTGGCCTTGCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaggtgtgacatcaacatgattcattgtactggtgccaagtagaggcaa Alignment from Pairagon CTTCTAGCCTGTGTTGTAAAGAAGAATTGG-AAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG taaccatgctatgcaccagcctgagggtccccaacatttctgtctttcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGCAAAGACCTTGTGTGTGCATTTCGACT---GAACTGGAGAGAGACACTGGCCTTGCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaggtgtgacatcaacatgattcattgtactggtgccaagtagaggcaa Alignment from Exonerate_protein2genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGG-AAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG taaccatgctatgcaccagcctgagggtccccaacatttctgtctttcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGCAAAGACCTTGTGTGTGCATTTCGACTG---AACTGGAGAGAGACACTGGCCTTGCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaggtgtgacatcaacatgattcattgtactggtgccaagtagaggcaa Alignment from Exonerate_coding2genome CTTCTAGCCTGTGTTGTAAAGAAGAATTGG-AAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG taaccatgctatgcaccagcctgagggtccccaacatttctgtctttcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGCAAAGACCTTGTGTGTGCATTTCGACTG---AACTGGAGAGAGACACTGGCCTTGCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaggtgtgacatcaacatgattcattgtactggtgccaagtagaggcaa Alignment from GeneWise CTTCTAGCCTGTGTTGTAAAGAAGAATTGG-AAGGACCTAGTATGTGCCTGTAGGCTGAAGAACTGGAGAGAGGCGCTGGCCTTGCTACTGACGTATTCAGGGCCAGAGAAGTTCCCTGAGCTCTGTG taaccatgctatgcaccagcctgagggtccccaacatttctgtctttcagCTCCTGGCCTGTGTTATAAAAAAGAATTGGCAAAGACCTTGTGTGTGCATTTCGACTG---AACTGGAGAGAGACACTGGCCTTGCTACTAACATATTCAGGGCCAGAGAAGTTCCCTGAACTTTGTGgtaggtgtgacatcaacatgattcattgtactggtgccaagtagaggcaa #### Sec31b_ID9039_13 --> 0 - 1 Original Alignment GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGG-GAGATCCCCACCACAGAAg ggcttaagtgcctcacttcacacatgattactctgctgcctctttcttagGCCTCCAAACACACTGCCAAGGAAACCTCTGAGTCCTCAGCTTTCTTTGATGAGCTAATACCTGAAAACATGACCCCCTGGCGTGATCCCCACTACAGAAggtaagttgctcctgggcaaggagatataactgtataggggtaattgggtc Alignment from CESAR GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGG-GAGATCCCCACCACAGAAg ggcttaagtgcctcacttcacacatgattactctgctgcctctttcttagGCCTCCAAACACACTGCCAAGGAAACCTCTGAGTCCTCAGCTTTCTTTGATGAGCTAATACCTGAAAACATGACCCCCTGGCGTGATCCCCACTACAGAAggtaagttgctcctgggcaaggagatataactgtataggggtaattgggtc Alignment from Spaln_aa2Genome GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAG-ATCCCCACCACAGAAG ggcttaagtgcctcacttcacacatgattactctgctgcctctttcttagGCCTCCAAACACACTGCCAAGGAAACCTCTGAGTCCTCAGCTTTCTTTGATGAGCTAATACCTGAAAACATGACCCCCTGGCGTgATCCCCACTACAGAAGgtaagttgctcctgggcaaggagatataactgtataggggtaattgggtc Alignment from Spaln_nt2Genome GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGG-GAGATCCCCACCACAGAAG ggcttaagtgcctcacttcacacatgattactctgctgcctctttcttagGCCTCCAAACACACTGCCAAGGAAACCTCTGAGTCCTCAGCTTTCTTTGATGAGCTAATACCTGAAAACATGACCCCCTGGCGTGATCCCCACTACAGAAGgtaagttgctcctgggcaaggagatataactgtataggggtaattgggtc Alignment from Pairagon GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGG-GAGATCCCCACCACAGAAG ggcttaagtgcctcacttcacacatgattactctgctgcctctttcttagGCCTCCAAACACACTGCCAAGGAAACCTCTGAGTCCTCAGCTTTCTTTGATGAGCTAATACCTGAAAACATGACCCCCTGGCGTGATCCCCACTACAGAAGgtaagttgctcctgggcaaggagatataactgtataggggtaattgggtc Alignment from Exonerate_protein2genome GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAG-ATCCCCACCACAGAAG ggcttaagtgcctcacttcacacatgattactctgctgcctctttcttagGCCTCCAAACACACTGCCAAGGAAACCTCTGAGTCCTCAGCTTTCTTTGATGAGCTAATACCTGAAAACATGACCCCCTGGCGTGATCCCCACTACAGAAGgtaagttgctcctgggcaaggagatataactgtataggggtaattgggtc Alignment from Exonerate_coding2genome GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGGGAG-ATCCCCACCACAGAAG ggcttaagtgcctcacttcacacatgattactctgctgcctctttcttagGCCTCCAAACACACTGCCAAGGAAACCTCTGAGTCCTCAGCTTTCTTTGATGAGCTAATACCTGAAAACATGACCCCCTGGCGTGATCCCCACTACAGAAGgtaagttgctcctgggcaaggagatataactgtataggggtaattgggtc Alignment from GeneWise GCCTCCAAACACACTGCCAAGGAAGCCTCTGAGTCCTCAGCCTTCTTTGATGAGCTGATACCTCAGAACATGACTCCCTGG- ggcttaagtgcctcacttcacacatgattactctgctgcctctttcttagGCCTCCAAACACACTGCCAAGGAAACCTCTGAGTCCTCAGCTTTCTTTGATGAGCTAATACCTGAAAACATGACCCCCTGGCgtgatccccactacagaaggtaagttgctcctgggcaaggagatataactgtataggggtaattgggtc #### Sec31b_ID9044_8 --> 0 - 0 Original Alignment GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGAT-GGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ggctagtgcccctgacatctgttccttatgtgatggtgtcctgtctgcagATAATCTACAAGTTGCCCACACAGAGCAGCTGGTGCTTTGATATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTCTCTGCTGTCTCTTTTGATCGGCTGGATCAGTTTGTGTTCTGTGACAGGAAGGAGTTGGGAAGCGCAGCATATGAGGCAGGCTGATAAGgtgaggagcagttgtttgaatgggggggggagctgtttatgagagtgaag Alignment from CESAR GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGAT-GGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ggctagtgcccctgacatctgttccttatgtgatggtgtcctgtctgcagATAATCTACAAGTTGCCCACACAGAGCAGCTGGTGCTTTGATATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTCTCTGCTGTCTCTTTTGATCGGCTGGATCAGTTTGTGTTCTGTGACAGGAAGGAGTTGGGAAGCGCAGCATATGAGGCAGGCTGATAAGgtgaggagcagttgtttgaatgggggggggagctgtttatgagagtgaag Alignment from Spaln_aa2Genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGAT-GGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ggctagtgcccctgacatctgttccttatgtgatggtgtcctgtctgcagATAATCTACAAGTTGCCCACACAGAGCAGCTGGTGCTTTGATATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTCTCTGCTGTCTCTTTTGATcGGCTGGATCAGTTTGTGTTCTGTGACAGGAAGGAGTTGGGAAGCGCAGCATATGAGGCAGGCTGATAAGgtgaggagcagttgtttgaatgggggggggagctgtttatgagagtgaag Alignment from Spaln_nt2Genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGAT-GGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ggctagtgcccctgacatctgttccttatgtgatggtgtcctgtctgcagATAATCTACAAGTTGCCCACACAGAGCAGCTGGTGCTTTGATATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTCTCTGCTGTCTCTTTTGATCGGCTGGATCAGTTTGTGTTCTGTGACAGGAAGGAGTTGGGAAGCGCAGCATATGAGGCAGGCTGATAAGgtgaggagcagttgtttgaatgggggggggagctgtttatgagagtgaag Alignment from Pairagon GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGAT-GGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ggctagtgcccctgacatctgttccttatgtgatggtgtcctgtctgcagATAATCTACAAGTTGCCCACACAGAGCAGCTGGTGCTTTGATATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTCTCTGCTGTCTCTTTTGATCGGCTGGATCAGTTTGTGTTCTGTGACAGGAAGGAGTTGGGAAGCGCAGCATATGAGGCAGGCTGATAAGgtgaggagcagttgtttgaatgggggggggagctgtttatgagagtgaag Alignment from Exonerate_protein2genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGAT-GGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ggctagtgcccctgacatctgttccttatgtgatggtgtcctgtctgcagATAATCTACAAGTTGCCCACACAGAGCAGCTGGTGCTTTGATATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTCTCTGCTGTCTCTTTTGATCGGCTGGATCAGTTTGTGTTCTGTGACAGGAAGGAGTTGGGAAGCGCAGCATATGAGGCAGGCTGATAAGgtgaggagcagttgtttgaatgggggggggagctgtttatgagagtgaag Alignment from Exonerate_coding2genome GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGAT-GGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ggctagtgcccctgacatctgttccttatgtgatggtgtcctgtctgcagATAATCTACAAGTTGCCCACACAGAGCAGCTGGTGCTTTGATATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTCTCTGCTGTCTCTTTTGATCGGCTGGATCAGTTTGTGTTCTGTGACAGGAAGGAGTTGGGAAGCGCAGCATATGAGGCAGGCTGATAAGgtgaggagcagttgtttgaatgggggggggagctgtttatgagagtgaag Alignment from GeneWise GTGGTCTACAAGCTGCCCACACAGAGCAGCTGGTGCTTTGATGTTCAGTGGTGCCCTCAGAGCCCTCCCGTGTTCTCTGCTGTCTCCTTCGAT-GGCTGGATCAGTTTGTGCTCTGTGATGGGTAGGAGCTGGGAAGCCCAGCACATGAGGCAGGCTGACAAG ggctagtgcccctgacatctgttccttatgtgatggtgtcctgtctgcagATAATCTACAAGTTGCCCACACAGAGCAGCTGGTGCTTTGATATTCAGTGGTGCCCTCCCAGCCCTCCAGTACTCTCTGCTGTCTCTTTTGATCGGCTGGATCAGTTTGTGTTCTGTGACAGGAAGGAGTTGGGAAGCGCAGCATATGAGGCAGGCTGATAAGgtgaggagcagttgtttgaatgggggggggagctgtttatgagagtgaag #### Sema4g_ID9244_2 --> 2 - 0 Original Alignment agCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGAT-AGGACTCACAAAGAG ggcatagtaaagtatttcccagctggcttacattaaattctcttccttagagGTATCACAAGTGCAACACTTCAGGGGGCAGGCCCAAAATTATTCAACCCTGCTGCTGGAGGAGGCTTCTGAAAAGCTGCTAGTGGGGGCTCGAGGTTCATTGTTCTCCCTCAGTGCACGTGAAATCAGAGAGCAGGACACATAAAGAGgtgcgccactgatgtttggcttacgggacctctagctatggcaccaggat Alignment from CESAR agCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGAT-AGGACTCACAAAGAG ggcatagtaaagtatttcccagctggcttacattaaattctcttccttagagGTATCACAAGTGCAACACTTCAGGGGGCAGGCCCAAAATTATTCAACCCTGCTGCTGGAGGAGGCTTCTGAAAAGCTGCTAGTGGGGGCTCGAGGTTCATTGTTCTCCCTCAGTGCACGTGAAATCAGAGAGCAGGACACATAAAGAGgtgcgccactgatgtttggcttacgggacctctagctatggcaccaggat Alignment from Spaln_aa2Genome AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGAT-AGGACTCACAAAGAG ggcatagtaaagtatttcccagctggcttacattaaattctcttccttagAGGTATCACAAGTGCAACACTTCAGGGGGCAGGCCCAAAATTATTCAACCCTGCTGCTGGAGGAGGCTTCTGAAAAGCTGCTAGTGGGGGCTCGAGGTTCATTGTTCTCCCTCAGTGCACGTGAAATCAGAGAGcAGGACACATAAAGAGgtgcgccactgatgtttggcttacgggacctctagctatggcaccaggat Alignment from Spaln_nt2Genome AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGAT-AGGACTCACAAAGAG ggcatagtaaagtatttcccagctggcttacattaaattctcttccttagAGGTATCACAAGTGCAACACTTCAGGGGGCAGGCCCAAAATTATTCAACCCTGCTGCTGGAGGAGGCTTCTGAAAAGCTGCTAGTGGGGGCTCGAGGTTCATTGTTCTCCCTCAGTGCACGTGAAATCAGAGAGCAGGACACATAAAGAGgtgcgccactgatgtttggcttacgggacctctagctatggcaccaggat Alignment from Pairagon AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGA-TAGGACTCACAAAGAG ggcatagtaaagtatttcccagctggcttacattaaattctcttccttagAGGTATCACAAGTGCAACACTTCAGGGGGCAGGCCCAAAATTATTCAACCCTGCTGCTGGAGGAGGCTTCTGAAAAGCTGCTAGTGGGGGCTCGAGGTTCATTGTTCTCCCTCAGTGCACGTGAAATCAGAGAGCAGGACACATAAAGAGgtgcgccactgatgtttggcttacgggacctctagctatggcaccaggat Alignment from Exonerate_protein2genome AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGAT-AGGACTCACAAAGAG ggcatagtaaagtatttcccagctggcttacattaaattctcttccttagAGGTATCACAAGTGCAACACTTCAGGGGGCAGGCCCAAAATTATTCAACCCTGCTGCTGGAGGAGGCTTCTGAAAAGCTGCTAGTGGGGGCTCGAGGTTCATTGTTCTCCCTCAGTGCACGTGAAATCAGAGAGCAGGACACATAAAGAGgtgcgccactgatgtttggcttacgggacctctagctatggcaccaggat Alignment from Exonerate_coding2genome AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGAT-AGGACTCACAAAGAG ggcatagtaaagtatttcccagctggcttacattaaattctcttccttagAGGTATCACAAGTGCAACACTTCAGGGGGCAGGCCCAAAATTATTCAACCCTGCTGCTGGAGGAGGCTTCTGAAAAGCTGCTAGTGGGGGCTCGAGGTTCATTGTTCTCCCTCAGTGCACGTGAAATCAGAGAGCAGGACACATAAAGAGgtgcgccactgatgtttggcttacgggacctctagctatggcaccaggat Alignment from GeneWise AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGA-GATAGGACTCACAAAGAG ggcatagtaaagtatttcccagctggcttacattaaattctcttccttagAGGTATCACAAGTGCAACACTTCAGGGGGCAGGCCCAAAATTATTCAACCCTGCTGCTGGAGGAGGCTTCTGAAAAGCTGCTAGTGGGGGCTCGAGGTTCATTGTTCTCCCTCAGTGCACGTGAAATCAGAGAGCAGGACACATAAAGAGgtgcgccactgatgtttggcttacgggacctctagctatggcaccaggat #### Sema4g_ID9247_5 --> 0 - 1 Original Alignment GATGCTGAAACCTTCATCTTGCCTACTAGTTTC-GAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTg aagccttgttgcccctcatgtaccattacctcttcattgtcctttcccagGATGCTGAAACCTTCATCTTGCCTACTAGTTTTCGAGGAGGGAAAAGAGGAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTggtataaatagtgtaaccaggccaccagccccacaattctgtgccctgaat Alignment from CESAR GATGCTGAAACCTTCATCTTGCCTACTAGT-TTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTg aagccttgttgcccctcatgtaccattacctcttcattgtcctttcccagGATGCTGAAACCTTCATCTTGCCTACTAGTTTTCGAGGAGGGAAAAGAGGAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTggtataaatagtgtaaccaggccaccagccccacaattctgtgccctgaat Alignment from Spaln_aa2Genome GATGCTGAAACCTTCATCTTGCCTACTAGT-TTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG aagccttgttgcccctcatgtaccattacctcttcattgtcctttcccagGATGCTGAAACCTTCATCTTGCCTACTAGTtTTCGAGGAGGGAAAAGAGGAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTGgtataaatagtgtaaccaggccaccagccccacaattctgtgccctgaat Alignment from Spaln_nt2Genome GATGCTGAAACCTTCATCTTGCCTACTAG-TTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG aagccttgttgcccctcatgtaccattacctcttcattgtcctttcccagGATGCTGAAACCTTCATCTTGCCTACTAGTTTTCGAGGAGGGAAAAGAGGAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTGgtataaatagtgtaaccaggccaccagccccacaattctgtgccctgaat Alignment from Pairagon GATGCTGAAACCTTCATCTTGCCTACTAG-TTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG aagccttgttgcccctcatgtaccattacctcttcattgtcctttcccagGATGCTGAAACCTTCATCTTGCCTACTAGTTTTCGAGGAGGGAAAAGAGGAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTGgtataaatagtgtaaccaggccaccagccccacaattctgtgccctgaat Alignment from Exonerate_protein2genome GATGCTGAAACCTTCATCTTGCCTACTAGT-TTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG aagccttgttgcccctcatgtaccattacctcttcattgtcctttcccagGATGCTGAAACCTTCATCTTGCCTACTAGTTTTCGAGGAGGGAAAAGAGGAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTGgtataaatagtgtaaccaggccaccagccccacaattctgtgccctgaat Alignment from Exonerate_coding2genome GATGCTGAAACCTTCATCTTGCCTACTAGT-TTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG aagccttgttgcccctcatgtaccattacctcttcattgtcctttcccagGATGCTGAAACCTTCATCTTGCCTACTAGTTTTCGAGGAGGGAAAAGAGGAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTGgtataaatagtgtaaccaggccaccagccccacaattctgtgccctgaat Alignment from GeneWise GATGCTGAAACCTTCATCTTGCCTACT-AGTTTCGAGGAGGGAAAGGAGAAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTG aagccttgttgcccctcatgtaccattacctcttcattgtcctttcccagGATGCTGAAACCTTCATCTTGCCTACTAGTTTTCGAGGAGGGAAAAGAGGAATGTCCTTATGACCCGGCCCGGGGCTTCACAGGCCTTATCATTGgtataaatagtgtaaccaggccaccagccccacaattctgtgccctgaat #### Sema4g_ID9248_6 --> 2 - 1 Original Alignment atGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACAC-TCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATg ttttcctagcagtgcatgccctatctccatcttcttttatttctctccagatGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGACGAAGCCGCCACCCACACCTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATggtaaagatagagtgcttaggaggggttggaggagggggcagctctctttt Alignment from CESAR atGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACAC-TCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATg ttttcctagcagtgcatgccctatctccatcttcttttatttctctccagatGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGACGAAGCCGCCACCCACACCTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATggtaaagatagagtgcttaggaggggttggaggagggggcagctctctttt Alignment from Spaln_aa2Genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACAC-TCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctagcagtgcatgccctatctccatcttcttttatttctctccagATGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGACGAAGCCGCCACCCACACcTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATGgtaaagatagagtgcttaggaggggttggaggagggggcagctctctttt Alignment from Spaln_nt2Genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACA-CTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctagcagtgcatgccctatctccatcttcttttatttctctccagATGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGACGAAGCCGCCACCCACACCTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATGgtaaagatagagtgcttaggaggggttggaggagggggcagctctctttt Alignment from Pairagon ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACA-CTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctagcagtgcatgccctatctccatcttcttttatttctctccagATGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGACGAAGCCGCCACCCACACCTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATGgtaaagatagagtgcttaggaggggttggaggagggggcagctctctttt Alignment from Exonerate_protein2genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACAC-TCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctagcagtgcatgccctatctccatcttcttttatttctctccagATGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGACGAAGCCGCCACCCACACCTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATGgtaaagatagagtgcttaggaggggttggaggagggggcagctctctttt Alignment from Exonerate_coding2genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACAC-TCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctagcagtgcatgccctatctccatcttcttttatttctctccagATGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGACGAAGCCGCCACCCACACCTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATGgtaaagatagagtgcttaggaggggttggaggagggggcagctctctttt Alignment from GeneWise ATGGAGGCCTCTACACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACAC-TCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctagcagtgcatgccctatctccatcttcttttatttctctccagATGGCGGCCTCTATACAGCCACCCGGTATGAATTCCGGAGCATTCCTGATATTCGACGAAGCCGCCACCCACACCTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATGgtaaagatagagtgcttaggaggggttggaggagggggcagctctctttt #### Sema4g_ID9250_8 --> 0 - 2 Original Alignment GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACA-CTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGtg aatttgacctcccagactcctgaactgacagtgtcccctgtcttttttagGGAGATCTGGGTGGGGAAAAGATCTTACAGAAGAAGTGGGAATCCTTCCTGAAGGCTCGACTCATCTGCCATGTTCCACAGTATGAGACACTTACGGGGAGTCTGCAGTCTTAATGCCGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGtggtgagttaggagaatgggcacagacattgggtaaagacaaaagaactgat Alignment from CESAR GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACTA-CGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGtg aatttgacctcccagactcctgaactgacagtgtcccctgtcttttttagGGAGATCTGGGTGGGGAAAAGATCTTACAGAAGAAGTGGGAATCCTTCCTGAAGGCTCGACTCATCTGCCATGTTCCACAGTATGAGACACTTACGGGGAGTCTGCAGTCTTAATGCCGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGtggtgagttaggagaatgggcacagacattgggtaaagacaaaagaactgat Alignment from Spaln_aa2Genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACA-CTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aatttgacctcccagactcctgaactgacagtgtcccctgtcttttttagGGAGATCTGGGTGGGGAAAAGATCTTACAGAAGAAGTGGGAATCCTTCCTGAAGGCTCGACTCATCTGCCATGTTCCACAGTATGAGACAcTTACGGGGAGTCTGCAGTCTTAATGCCGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGTGgtgagttaggagaatgggcacagacattgggtaaagacaaaagaactgat Alignment from Spaln_nt2Genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACACT-ACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aatttgacctcccagactcctgaactgacagtgtcccctgtcttttttagGGAGATCTGGGTGGGGAAAAGATCTTACAGAAGAAGTGGGAATCCTTCCTGAAGGCTCGACTCATCTGCCATGTTCCACAGTATGAGACACTTACGGGGAGTCTGCAGTCTTAATGCCGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGTGgtgagttaggagaatgggcacagacattgggtaaagacaaaagaactgat Alignment from Pairagon GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACAC-TACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aatttgacctcccagactcctgaactgacagtgtcccctgtcttttttagGGAGATCTGGGTGGGGAAAAGATCTTACAGAAGAAGTGGGAATCCTTCCTGAAGGCTCGACTCATCTGCCATGTTCCACAGTATGAGACACTTACGGGGAGTCTGCAGTCTTAATGCCGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGTGgtgagttaggagaatgggcacagacattgggtaaagacaaaagaactgat Alignment from Exonerate_protein2genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACA-CTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aatttgacctcccagactcctgaactgacagtgtcccctgtcttttttagGGAGATCTGGGTGGGGAAAAGATCTTACAGAAGAAGTGGGAATCCTTCCTGAAGGCTCGACTCATCTGCCATGTTCCACAGTATGAGACACTTACGGGGAGTCTGCAGTCTTAATGCCGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGTGgtgagttaggagaatgggcacagacattgggtaaagacaaaagaactgat Alignment from Exonerate_coding2genome GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACA-CTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aatttgacctcccagactcctgaactgacagtgtcccctgtcttttttagGGAGATCTGGGTGGGGAAAAGATCTTACAGAAGAAGTGGGAATCCTTCCTGAAGGCTCGACTCATCTGCCATGTTCCACAGTATGAGACACTTACGGGGAGTCTGCAGTCTTAATGCCGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGTGgtgagttaggagaatgggcacagacattgggtaaagacaaaagaactgat Alignment from GeneWise GGAGATCTGGGAGGGAAGAAGATCCTACAGAAGAAGTGGACATCCTTCCTGAAGGCTCGTCTCATCTGCCACATCCCACAGTATGAGACA-CTACGTGGGGTCTGCAGCCTGAATGCTGATACATCATCCCACACACATTTCTATGCCGTCTTCACACTGACAACACAGTG aatttgacctcccagactcctgaactgacagtgtcccctgtcttttttagGGAGATCTGGGTGGGGAAAAGATCTTACAGAAGAAGTGGGAATCCTTCCTGAAGGCTCGACTCATCTGCCATGTTCCACAGTATGAGACACTTACGGGGAGTCTGCAGTCTTAATGCCGACACATCATCCCACACACATTTCTATTCTGTCTTTATGCTAACAACCCAGTGgtgagttaggagaatgggcacagacattgggtaaagacaaaagaactgat #### Sema4g_ID9251_9 --> 1 - 0 Original Alignment gAAGACGCTGGAGGCTTCA-GCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgtggattggaggtattcaaatgtcctccaactaaattattcaggAAGACACTGGAGGCTTCACGCCATCTGCCGATACGACCTGGCGGAGATTCAAGCTGTCTTT---AGCCCTTTTATGGAGTACCAGGATGGTGCCCGATGTTGGGGCTGCTATGGAGGTGGAGTACATCAACCCCGACCTGGCTTAgtaagaactccaggtctggaccctacattaattggacaaagggagtcggg Alignment from CESAR gAAGACGCTGGAGGCTTCA-GCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgtggattggaggtattcaaatgtcctccaactaaattattcaggAAGACACTGGAGGCTTCACGCCATCTGCCGATACGACCTGGCGGAGATTCAAGCTGTCTTT---AGCCCTTTTATGGAGTACCAGGATGGTGCCCGATGTTGGGGCTGCTATGGAGGTGGAGTACATCAACCCCGACCTGGCTTAgtaagaactccaggtctggaccctacattaattggacaaagggagtcggg Alignment from Spaln_aa2Genome GAAGACGCTGGAGGCTTCA-GCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgtggattggaggtattcaaatgtcctccaactaaattattcagGAAGACACTGGAGGCTTCAcGCCATCTGCCGATACGACCTGGCGGAGATTCAAGCTGTCTTTAGC---CCTTTTATGGAGTACCAGGATGGTGCCCGATGTTGGGGCTGCTATGGAGGTGGAGTACATCAACCCCGACCTGGCTTAgtaagaactccaggtctggaccctacattaattggacaaagggagtcggg Alignment from Spaln_nt2Genome GAAGACGCTGGAGGCTTCA-GCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgtggattggaggtattcaaatgtcctccaactaaattattcagGAAGACACTGGAGGCTTCACGCCATCTGCCGATACGACCTGGCGGAGATTCAAGCTGTCTTTA---GCCCTTTTATGGAGTACCAGGATGGTGCCCGATGTTGGGGCTGCTATGGAGGTGGAGTACATCAACCCCGACCTGGCTTAgtaagaactccaggtctggaccctacattaattggacaaagggagtcggg Alignment from Pairagon GAAGACGCTGGAGGCTTCA-GCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgtggattggaggtattcaaatgtcctccaactaaattattcagGAAGACACTGGAGGCTTCACGCCATCTGCCGATACGACCTGGCGGAGATTCAAGCTGTCTTTA---GCCCTTTTATGGAGTACCAGGATGGTGCCCGATGTTGGGGCTGCTATGGAGGTGGAGTACATCAACCCCGACCTGGCTTAgtaagaactccaggtctggaccctacattaattggacaaagggagtcggg Alignment from Exonerate_protein2genome GAAGACGCTGGAGGCTTCA-GCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgtggattggaggtattcaaatgtcctccaactaaattattcagGAAGACACTGGAGGCTTCACGCCATCTGCCGATACGACCTGGCGGAGATTCAAGCTGTCTTTAGC---CCTTTTATGGAGTACCAGGATGGTGCCCGATGTTGGGGCTGCTATGGAGGTGGAGTACATCAACCCCGACCTGGCTTAgtaagaactccaggtctggaccctacattaattggacaaagggagtcggg Alignment from Exonerate_coding2genome GAAGACGCTGGAGGCTTCA-GCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgtggattggaggtattcaaatgtcctccaactaaattattcagGAAGACACTGGAGGCTTCACGCCATCTGCCGATACGACCTGGCGGAGATTCAAGCTGTCTTTAGC---CCTTTTATGGAGTACCAGGATGGTGCCCGATGTTGGGGCTGCTATGGAGGTGGAGTACATCAACCCCGACCTGGCTTAgtaagaactccaggtctggaccctacattaattggacaaagggagtcggg Alignment from GeneWise ----TGGAAGACGCTGGAGGCTTCAGCCATCTGCCGCTATGACCTGGCTGAGATTCAGGCTGTCTTCACAGGCCCTTTTATGGAGTACCAGGATGGTGCCCGGCGCTGGGGCCGCTATGAGGGTGGGGTGCCTGAACCCCGGCCTGGCTCG cataggtgtggattggaggtattcaaatgtcctccaactaaattattcaggaagACACTGGAGGCTT---------CACGCCATCTGCCGATACGACCTGGCGGAGATTCAAGCTGTCTTTAGC---CCTTTTATGGAGTACCAGGATGGTGCCCGATGTTGGGGCTGCTATGGAGGTGGAGTACATCAACCCCGACCTGGCTTAgtaagaactccaggtctggaccctacattaattggacaaagggagtcggg #### Sema4g_ID9252_10 --> 0 - 1 Original Alignment TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCAT---CCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGG-CCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAg gtcatgtggaagtatagctgcagagtcttgacctcatttctctcctgcagTGTATCTCTGATTCTCTGCGTAGCCAAGGGTACAACTCATCCCAAGACTTGCCATCCCTTGTCCTTGACTTTGTGAAGCTGCACCCACCACTGATGGCTCAGCCTGTGGTGCCCACACGTGGGCAGCCCCCTGCTGCTGAAGCGCAATGTACGCTACACACATGTCACAGGTACACATGTCAGTACACCTGCAGGACCTACCTATGAGTTGCTCTTTCTAGGCACAggtaatgcatacccaccctggacatattggcctccgccttagctgggatac Alignment from CESAR TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCC---CTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGG-CCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAg gtcatgtggaagtatagctgcagagtcttgacctcatttctctcctgcagTGTATCTCTGATTCTCTGCGTAGCCAAGGGTACAACTCATCCCAAGACTTGCCATCCCTTGTCCTTGACTTTGTGAAGCTGCACCCACCACTGATGGCTCAGCCTGTGGTGCCCACACGTGGGCAGCCCCCTGCTGCTGAAGCGCAATGTACGCTACACACATGTCACAGGTACACATGTCAGTACACCTGCAGGACCTACCTATGAGTTGCTCTTTCTAGGCACAggtaatgcatacccaccctggacatattggcctccgccttagctgggatac Alignment from Spaln_aa2Genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCAT---CCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGG-CCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG gtcatgtggaagtatagctgcagagtcttgacctcatttctctcctgcagTGTATCTCTGATTCTCTGCGTAGCCAAGGGTACAACTCATCCCAAGACTTGCCATCCCTTGTCCTTGACTTTGTGAAGCTGCACCCACCACTGATGGCTCAGCCTGTGGTGCCCACACGTGGGCAGcCCCCTGCTGCTGAAGCGCAATGTACGCTACACACATGTCACAGGTACACATGTCAGTACACCTGCAGGACCTACCTATGAGTTGCTCTTTCTAGGCACAGgtaatgcatacccaccctggacatattggcctccgccttagctgggatac Alignment from Spaln_nt2Genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCC---TGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCT-TGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG gtcatgtggaagtatagctgcagagtcttgacctcatttctctcctgcagTGTATCTCTGATTCTCTGCGTAGCCAAGGGTACAACTCATCCCAAGACTTGCCATCCCTTGTCCTTGACTTTGTGAAGCTGCACCCACCACTGATGGCTCAGCCTGTGGTGCCCACACGTGGGCAGCCCCCTGCTGCTGAAGCGCAATGTACGCTACACACATGTCACAGGTACACATGTCAGTACACCTGCAGGACCTACCTATGAGTTGCTCTTTCTAGGCACAGgtaatgcatacccaccctggacatattggcctccgccttagctgggatac Alignment from Pairagon TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCAT---CCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGG-CCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG gtcatgtggaagtatagctgcagagtcttgacctcatttctctcctgcagTGTATCTCTGATTCTCTGCGTAGCCAAGGGTACAACTCATCCCAAGACTTGCCATCCCTTGTCCTTGACTTTGTGAAGCTGCACCCACCACTGATGGCTCAGCCTGTGGTGCCCACACGTGGGCAGCCCCCTGCTGCTGAAGCGCAATGTACGCTACACACATGTCACAGGTACACATGTCAGTACACCTGCAGGACCTACCTATGAGTTGCTCTTTCTAGGCACAGgtaatgcatacccaccctggacatattggcctccgccttagctgggatac Alignment from Exonerate_protein2genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCAT---CCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGG-CCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG gtcatgtggaagtatagctgcagagtcttgacctcatttctctcctgcagTGTATCTCTGATTCTCTGCGTAGCCAAGGGTACAACTCATCCCAAGACTTGCCATCCCTTGTCCTTGACTTTGTGAAGCTGCACCCACCACTGATGGCTCAGCCTGTGGTGCCCACACGTGGGCAGCCCCCTGCTGCTGAAGCGCAATGTACGCTACACACATGTCACAGGTACACATGTCAGTACACCTGCAGGACCTACCTATGAGTTGCTCTTTCTAGGCACAGgtaatgcatacccaccctggacatattggcctccgccttagctgggatac Alignment from Exonerate_coding2genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCAT---CCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGG-CCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG gtcatgtggaagtatagctgcagagtcttgacctcatttctctcctgcagTGTATCTCTGATTCTCTGCGTAGCCAAGGGTACAACTCATCCCAAGACTTGCCATCCCTTGTCCTTGACTTTGTGAAGCTGCACCCACCACTGATGGCTCAGCCTGTGGTGCCCACACGTGGGCAGCCCCCTGCTGCTGAAGCGCAATGTACGCTACACACATGTCACAGGTACACATGTCAGTACACCTGCAGGACCTACCTATGAGTTGCTCTTTCTAGGCACAGgtaatgcatacccaccctggacatattggcctccgccttagctgggatac Alignment from GeneWise TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCC---CTGATGGCTCGGCCTGTGGTGCCCACACGTGGG-CGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG gtcatgtggaagtatagctgcagagtcttgacctcatttctctcctgcagTGTATCTCTGATTCTCTGCGTAGCCAAGGGTACAACTCATCCCAAGACTTGCCATCCCTTGTCCTTGACTTTGTGAAGCTGCACCCACCACTGATGGCTCAGCCTGTGGTGCCCACACGTGGGCAGCCCCCTGCTGCTGAAGCGCAATGTACGCTACACACATGTCACAGGTACACATGTCAGTACACCTGCAGGACCTACCTATGAGTTGCTCTTTCTAGGCACAGgtaatgcatacccaccctggacatattggcctccgccttagctgggatac #### Sema4g_ID9254_12 --> 0 - 2 Original Alignment CACAGCCTCTACGTGGGG-GCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACag tggggtggctggagagacacaacttgttaactaatatgatttctttacagCATAGCCTATACGTGGGGCGCTGCTAGTGGAATT---CAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACTGTAGCGAACaggtgagtagacagggtagataggtgcctgttgaggaggaaaccctgccgcc Alignment from CESAR CACAGCCTCTACGTGGGG-GCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACag tggggtggctggagagacacaacttgttaactaatatgatttctttacagCATAGCCTATACGTGGGGCGCTGCTAGTGGAATT---CAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACTGTAGCGAACaggtgagtagacagggtagataggtgcctgttgaggaggaaaccctgccgcc Alignment from Spaln_aa2Genome CACAGCCTCTACGTGGGG-GCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG tggggtggctggagagacacaacttgttaactaatatgatttctttacagCATAGCCTATACGTGGGGcGCTGCTAGTGGAATT---CAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACTGTAGCGAACAGgtgagtagacagggtagataggtgcctgttgaggaggaaaccctgccgcc Alignment from Spaln_nt2Genome CACAGCCTCTACGTGGGG-GCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG tggggtggctggagagacacaacttgttaactaatatgatttctttacagCATAGCCTATACGTGGGGCGCTGCTAGTGGA---ATTCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACTGTAGCGAACAGgtgagtagacagggtagataggtgcctgttgaggaggaaaccctgccgcc Alignment from Pairagon CACAGCCTCTACGTGGGG-GCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG tggggtggctggagagacacaacttgttaactaatatgatttctttacagCATAGCCTATACGTGGGGCGCTGCTAGTGGAA---TTCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACTGTAGCGAACAGgtgagtagacagggtagataggtgcctgttgaggaggaaaccctgccgcc Alignment from Exonerate_protein2genome CACAGCCTCTACGTG-GGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG tggggtggctggagagacacaacttgttaactaatatgatttctttacagCATAGCCTATACGTGGGGCGCTGCTAGTGGAATT---CAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACTGTAGCGAACAGgtgagtagacagggtagataggtgcctgttgaggaggaaaccctgccgcc Alignment from Exonerate_coding2genome CACAGCCTCTACGTG-GGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG tggggtggctggagagacacaacttgttaactaatatgatttctttacagCATAGCCTATACGTGGGGCGCTGCTAGTGGAATT---CAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACTGTAGCGAACAGgtgagtagacagggtagataggtgcctgttgaggaggaaaccctgccgcc Alignment from GeneWise ----CTCTACGTG---GGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG tggggtggctggagagacacaacttgttaactaatatgatttctttacagCATAGCCTATACGTGGGGCGCTGCTAGTGGAATT---CAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCTTGCTATGACTGCATCCTAGCACGAGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACTGTAGCGAACAGgtgagtagacagggtagataggtgcctgttgaggaggaaaccctgccgcc #### Sf1_ID1664_5 --> 1 - 2 Original Alignment gCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATC-CCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCag taaaaagaacatggataatggatagatggttataattatttctttctcagaCCTCCAGCAATGCGTGTGAGTGATAAAGTGATGATACCCGCAATACGAATATCCAGAAATTAATTTTGTGGGCCTTCTAATTGGTCCCaggtgaggaattagtggtctatggccctgggtgtccattgtagttgaagcac Alignment from CESAR gCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCC-CAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCag taaaaagaacatggataatggatagatggttataattatttctttctcagaCCTCCAGCAATGCGTGTGAGTGATAAAGTGATGATACCCGCAATACGAATATCCAGAAATTAATTTTGTGGGCCTTCTAATTGGTCCCaggtgaggaattagtggtctatggccctgggtgtccattgtagttgaagcac Alignment from Spaln_aa2Genome GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCC-CAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG taaaaagaacatggataatggatagatggttataattatttctttctcagACCTCCAGCAATGCGTGTGAGTGATAAAGTGATGATACCCgCAATACGAATATCCAGAAATTAATTTTGTGGGCCTTCTAATTGGTCCCAGgtgaggaattagtggtctatggccctgggtgtccattgtagttgaagcac Alignment from Spaln_nt2Genome GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCC-CAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG taaaaagaacatggataatggatagatggttataattatttctttctcagACCTCCAGCAATGCGTGTGAGTGATAAAGTGATGATACCCGCAATACGAATATCCAGAAATTAATTTTGTGGGCCTTCTAATTGGTCCCAGgtgaggaattagtggtctatggccctgggtgtccattgtagttgaagcac Alignment from Pairagon GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGAT-CCCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG taaaaagaacatggataatggatagatggttataattatttctttctcagACCTCCAGCAATGCGTGTGAGTGATAAAGTGATGATACCCGCAATACGAATATCCAGAAATTAATTTTGTGGGCCTTCTAATTGGTCCCAGgtgaggaattagtggtctatggccctgggtgtccattgtagttgaagcac Alignment from Exonerate_protein2genome GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATC-CCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG taaaaagaacatggataatggatagatggttataattatttctttctcagACCTCCAGCAATGCGTGTGAGTGATAAAGTGATGATACCCGCAATACGAATATCCAGAAATTAATTTTGTGGGCCTTCTAATTGGTCCCAGgtgaggaattagtggtctatggccctgggtgtccattgtagttgaagcac Alignment from Exonerate_coding2genome GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATC-CCCCAAGACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG taaaaagaacatggataatggatagatggttataattatttctttctcagACCTCCAGCAATGCGTGTGAGTGATAAAGTGATGATACCCGCAATACGAATATCCAGAAATTAATTTTGTGGGCCTTCTAATTGGTCCCAGgtgaggaattagtggtctatggccctgggtgtccattgtagttgaagcac Alignment from GeneWise GCCTCCAGCAACACGTGTGAGCGATAAAGTAATGATCCCCCAA-GACGAATATCCAGAAATCAATTTTGTGGGGCTCCTAATTGGACCCAG taaaaagaacatggataatggatagatggttataattatttctttctcagACCTCCAGCAATGCGTGTGAGTGATAAAGTGATGATACCCGCAATACGAATATCCAGAAATTAATTTTGTGGGCCTTCTAATTGGTCCCAGgtgaggaattagtggtctatggccctgggtgtccattgtagttgaagcac #### Sf1_ID1669_10 --> 0 - 1 Original Alignment TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCC-AGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGg ctttgttgagacatacaggtggatactgtgtttctgttcctgtcttccagTCTCTCATGTCTACGACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGCCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGggtgagtaaggtgaccaagaacacatagggcttgagcacatgggcacggac Alignment from CESAR TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTA-CCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGg ctttgttgagacatacaggtggatactgtgtttctgttcctgtcttccagTCTCTCATGTCTACGACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGCCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGggtgagtaaggtgaccaagaacacatagggcttgagcacatgggcacggac Alignment from Spaln_aa2Genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTA-CCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ctttgttgagacatacaggtggatactgtgtttctgttcctgtcttccagTCTCTCATGTCTACGACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGCCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTAcCCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtgagtaaggtgaccaagaacacatagggcttgagcacatgggcacggac Alignment from Spaln_nt2Genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTA-CCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ctttgttgagacatacaggtggatactgtgtttctgttcctgtcttccagTCTCTCATGTCTACGACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGCCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtgagtaaggtgaccaagaacacatagggcttgagcacatgggcacggac Alignment from Pairagon TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTA-CCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ctttgttgagacatacaggtggatactgtgtttctgttcctgtcttccagTCTCTCATGTCTACGACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGCCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtgagtaaggtgaccaagaacacatagggcttgagcacatgggcacggac Alignment from Exonerate_protein2genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTA-CCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ctttgttgagacatacaggtggatactgtgtttctgttcctgtcttccagTCTCTCATGTCTACGACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGCCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtgagtaaggtgaccaagaacacatagggcttgagcacatgggcacggac Alignment from Exonerate_coding2genome TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTA-CCCAGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ctttgttgagacatacaggtggatactgtgtttctgttcctgtcttccagTCTCTCATGTCTACGACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGCCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtgagtaaggtgaccaagaacacatagggcttgagcacatgggcacggac Alignment from GeneWise TCTCTCATGTCTACAACTCAGAGCCGCCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGTCCTGGAGGTGGCCCCCACAGCTTCCCACACCCATTACCC-AGCCTGACAGGTGGGCATGGTGGGCATCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCGATGAACCAGGGCCCCCACCCACCTGGGCACCATGGCCCTCCTCCAATGG ctttgttgagacatacaggtggatactgtgtttctgttcctgtcttccagTCTCTCATGTCTACGACTCAGAGCCACCCACCCTGGATGAATTCTGGTCCTTCAGAGAATCGGCCCTACCATGGCATGCATGGAGGTGGTCCTGGTGGCCCTGGAGGAGGCCCCCACAGTTTTCCACACCCATTACCCCAGTCTTACAGGTGGGCATGGTGGGCACCCCATGCAGCACAACCCAAATGGACCACCACCACCTTGGATGCAGCCACCACCACCACCAATGAACCAAGGCCCACACCCATCTGGGCACCATGGCCCTCCTCCAATGGgtgagtaaggtgaccaagaacacatagggcttgagcacatgggcacggac #### Sf3b2_ID898_20 --> 0 - 0 Original Alignment GTTATGAGCCGGAAGGGCCCAGCCCCT-GAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGAC---ATGGTGGCTGAGCATGCTGCTAAGCAGAAG tgaggcccccatctctaggacctcagagttatttaccttttatgttccagGTTATGAGCCAGAAGGGGGCTGCCCCTCGAGTTACAAGGTGTGGAAGTAGCACTGGCACCTGAAGAATTGGACTTGGATTCCATGGCTACAATGCAGAAGTATGAGGAACATGTTCGGGAAAAACAGGCACAAGTGGAGAAGGGAGATTTCAGTGATATGATGGTGGCTGAGCATGCTGCAAAGCATAAAgtgagtgtgattggtatatttagcatgggggctattctctctggtgggaa Alignment from CESAR GTTATGAGCCGGAAGGGCCCAGCCCCT-GAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGAC---ATGGTGGCTGAGCATGCTGCTAAGCAGAAG tgaggcccccatctctaggacctcagagttatttaccttttatgttccagGTTATGAGCCAGAAGGGGGCTGCCCCTCGAGTTACAAGGTGTGGAAGTAGCACTGGCACCTGAAGAATTGGACTTGGATTCCATGGCTACAATGCAGAAGTATGAGGAACATGTTCGGGAAAAACAGGCACAAGTGGAGAAGGGAGATTTCAGTGATATGATGGTGGCTGAGCATGCTGCAAAGCATAAAgtgagtgtgattggtatatttagcatgggggctattctctctggtgggaa Alignment from Spaln_aa2Genome GTTATGAGCCGGAAGGGCCCAGCCCCT-GAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGAC---ATGGTGGCTGAGCATGCTGCTAAGCAGAAG tgaggcccccatctctaggacctcagagttatttaccttttatgttccagGTTATGAGCCAGAAGGGGGCTGCCCCTcGAGTTACAAGGTGTGGAAGTAGCACTGGCACCTGAAGAATTGGACTTGGATTCCATGGCTACAATGCAGAAGTATGAGGAACATGTTCGGGAAAAACAGGCACAAGTGGAGAAGGGAGATTTCAGTGATATGATGGTGGCTGAGCATGCTGCAAAGCATAAAgtgagtgtgattggtatatttagcatgggggctattctctctggtgggaa Alignment from Spaln_nt2Genome GTTATGAGCCGGAAGGGCCCAGCCCCT-GAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGACATG---GTGGCTGAGCATGCTGCTAAGCAGAAG tgaggcccccatctctaggacctcagagttatttaccttttatgttccagGTTATGAGCCAGAAGGGGGCTGCCCCTCGAGTTACAAGGTGTGGAAGTAGCACTGGCACCTGAAGAATTGGACTTGGATTCCATGGCTACAATGCAGAAGTATGAGGAACATGTTCGGGAAAAACAGGCACAAGTGGAGAAGGGAGATTTCAGTGATATGATGGTGGCTGAGCATGCTGCAAAGCATAAAgtgagtgtgattggtatatttagcatgggggctattctctctggtgggaa Alignment from Pairagon GTTATGAGCCGGAAGGGCCCAGCCCCT-GAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGAC---ATGGTGGCTGAGCATGCTGCTAAGCAGAAG tgaggcccccatctctaggacctcagagttatttaccttttatgttccagGTTATGAGCCAGAAGGGGGCTGCCCCTCGAGTTACAAGGTGTGGAAGTAGCACTGGCACCTGAAGAATTGGACTTGGATTCCATGGCTACAATGCAGAAGTATGAGGAACATGTTCGGGAAAAACAGGCACAAGTGGAGAAGGGAGATTTCAGTGATATGATGGTGGCTGAGCATGCTGCAAAGCATAAAgtgagtgtgattggtatatttagcatgggggctattctctctggtgggaa Alignment from Exonerate_protein2genome GTTATGAGCCGGAAGGGCCCAGCCCCT-GAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGAC---ATGGTGGCTGAGCATGCTGCTAAGCAGAAG tgaggcccccatctctaggacctcagagttatttaccttttatgttccagGTTATGAGCCAGAAGGGGGCTGCCCCTCGAGTTACAAGGTGTGGAAGTAGCACTGGCACCTGAAGAATTGGACTTGGATTCCATGGCTACAATGCAGAAGTATGAGGAACATGTTCGGGAAAAACAGGCACAAGTGGAGAAGGGAGATTTCAGTGATATGATGGTGGCTGAGCATGCTGCAAAGCATAAAgtgagtgtgattggtatatttagcatgggggctattctctctggtgggaa Alignment from Exonerate_coding2genome GTTATGAGCCGGAAGGGCCCAGCCCCT-GAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGAC---ATGGTGGCTGAGCATGCTGCTAAGCAGAAG tgaggcccccatctctaggacctcagagttatttaccttttatgttccagGTTATGAGCCAGAAGGGGGCTGCCCCTCGAGTTACAAGGTGTGGAAGTAGCACTGGCACCTGAAGAATTGGACTTGGATTCCATGGCTACAATGCAGAAGTATGAGGAACATGTTCGGGAAAAACAGGCACAAGTGGAGAAGGGAGATTTCAGTGATATGATGGTGGCTGAGCATGCTGCAAAGCATAAAgtgagtgtgattggtatatttagcatgggggctattctctctggtgggaa Alignment from GeneWise GTTATGAGCCGGAAGGGCCCAGCCCCT-GAATTGCAAGGTGTGGAAGTAGCGCTGGCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGACATG---GTGGCTGAGCATGCTGCTAAGCAGAAG tgaggcccccatctctaggacctcagagttatttaccttttatgttccagGTTATGAGCCAGAAGGGGGCTGCCCCTCGAGTTACAAGGTGTGGAAGTAGCACTGGCACCTGAAGAATTGGACTTGGATTCCATGGCTACAATGCAGAAGTATGAGGAACATGTTCGGGAAAAACAGGCACAAGTGGAGAAGGGAGATTTCAGTGATATGATGGTGGCTGAGCATGCTGCAAAGCATAAAgtgagtgtgattggtatatttagcatgggggctattctctctggtgggaa #### Sf3b2_ID901_17 --> 0 - 2 Original Alignment ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAG-CCAGATGAGACTGGCTTCATCACACCTGCAGACag gccagattcagcaactccctgccatgaatcaccaatctgactctctgcagACCAAAACGGAAGAGGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAGGAGGAGGAAGAGGAGGACAGTGATGAAGATAAGCCCAGATGAGACTGGCTTCATCACACCTGCAGACaggtaagtacagaggctgtccccctagagttgcttacctgccattgctattg Alignment from CESAR ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAG-CCAGATGAGACTGGCTTCATCACACCTGCAGACag gccagattcagcaactccctgccatgaatcaccaatctgactctctgcagACCAAAACGGAAGAGGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAGGAGGAGGAAGAGGAGGACAGTGATGAAGATAAGCCCAGATGAGACTGGCTTCATCACACCTGCAGACaggtaagtacagaggctgtccccctagagttgcttacctgccattgctattg Alignment from Spaln_aa2Genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCA-GATGAGACTGGCTTCATCACACCTGCAGACAG gccagattcagcaactccctgccatgaatcaccaatctgactctctgcagACCAAAACGGAAGAGGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAGGAGGAGGAAGAGGAGGACAGTGATGAAGATAAGCCCaGATGAGACTGGCTTCATCACACCTGCAGACAGgtaagtacagaggctgtccccctagagttgcttacctgccattgctattg Alignment from Spaln_nt2Genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAG-CCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagattcagcaactccctgccatgaatcaccaatctgactctctgcagACCAAAACGGAAGAGGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAGGAGGAGGAAGAGGAGGACAGTGATGAAGATAAGCCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtaagtacagaggctgtccccctagagttgcttacctgccattgctattg Alignment from Pairagon ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAG-CCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagattcagcaactccctgccatgaatcaccaatctgactctctgcagACCAAAACGGAAGAGGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAGGAGGAGGAAGAGGAGGACAGTGATGAAGATAAGCCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtaagtacagaggctgtccccctagagttgcttacctgccattgctattg Alignment from Exonerate_protein2genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAG-CCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagattcagcaactccctgccatgaatcaccaatctgactctctgcagACCAAAACGGAAGAGGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAGGAGGAGGAAGAGGAGGACAGTGATGAAGATAAGCCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtaagtacagaggctgtccccctagagttgcttacctgccattgctattg Alignment from Exonerate_coding2genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAG-CCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagattcagcaactccctgccatgaatcaccaatctgactctctgcagACCAAAACGGAAGAGGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAGGAGGAGGAAGAGGAGGACAGTGATGAAGATAAGCCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtaagtacagaggctgtccccctagagttgcttacctgccattgctattg Alignment from GeneWise ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGAC-AAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagattcagcaactccctgccatgaatcaccaatctgactctctgcagACCAAAACGGAAGAGGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCTCAGAGGAGGAGGAAGAGGAGGACAGTGATGAAGATAAGCCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtaagtacagaggctgtccccctagagttgcttacctgccattgctattg #### Sf3b2_ID910_8 --> 2 - 0 Original Alignment agGAGGAGGAAATGGAGACAGATACTCGCTCATCT-CTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagtttttacagttagaaaaggtcagtcacagatgtgcctcttgcagagAAAGAAGAAATGGAGACAGTCACTCGCTCATCTCCTGGGACCATCTGCATCAGAGACTGAGGAAGACACAGTGTCCATATCTAAAAAAGAGgtatgagtttagaaggagtaatgccacttttctgtgagcttcttggttgt Alignment from CESAR agGAGGAGGAAATGGAGACAGATACTCGCTCATCT-CTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagtttttacagttagaaaaggtcagtcacagatgtgcctcttgcagagAAAGAAGAAATGGAGACAGTCACTCGCTCATCTCCTGGGACCATCTGCATCAGAGACTGAGGAAGACACAGTGTCCATATCTAAAAAAGAGgtatgagtttagaaggagtaatgccacttttctgtgagcttcttggttgt Alignment from Spaln_aa2Genome AGGAGGAGGAAATGGAGACAGATACTCGCTCATCT-CTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagtttttacagttagaaaaggtcagtcacagatgtgcctcttgcagAGAAAGAAGAAATGGAGACAGTCACTCGCTCATCTcCTGGGACCATCTGCATCAGAGACTGAGGAAGACACAGTGTCCATATCTAAAAAAGAGgtatgagtttagaaggagtaatgccacttttctgtgagcttcttggttgt Alignment from Spaln_nt2Genome AGGAGGAGGAAATGGAGACAGATACTCGCTCATCTC-TGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagtttttacagttagaaaaggtcagtcacagatgtgcctcttgcagAGAAAGAAGAAATGGAGACAGTCACTCGCTCATCTCCTGGGACCATCTGCATCAGAGACTGAGGAAGACACAGTGTCCATATCTAAAAAAGAGgtatgagtttagaaggagtaatgccacttttctgtgagcttcttggttgt Alignment from Pairagon AGGAGGAGGAAATGGAGACAGATACTCGCTCATCT-CTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagtttttacagttagaaaaggtcagtcacagatgtgcctcttgcagAGAAAGAAGAAATGGAGACAGTCACTCGCTCATCTCCTGGGACCATCTGCATCAGAGACTGAGGAAGACACAGTGTCCATATCTAAAAAAGAGgtatgagtttagaaggagtaatgccacttttctgtgagcttcttggttgt Alignment from Exonerate_protein2genome AGGAGGAGGAAATGGAGACAGATACTCGCTCATCT-CTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagtttttacagttagaaaaggtcagtcacagatgtgcctcttgcagAGAAAGAAGAAATGGAGACAGTCACTCGCTCATCTCCTGGGACCATCTGCATCAGAGACTGAGGAAGACACAGTGTCCATATCTAAAAAAGAGgtatgagtttagaaggagtaatgccacttttctgtgagcttcttggttgt Alignment from Exonerate_coding2genome AGGAGGAGGAAATGGAGACAGATACTCGCTCATCT-CTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagtttttacagttagaaaaggtcagtcacagatgtgcctcttgcagAGAAAGAAGAAATGGAGACAGTCACTCGCTCATCTCCTGGGACCATCTGCATCAGAGACTGAGGAAGACACAGTGTCCATATCTAAAAAAGAGgtatgagtttagaaggagtaatgccacttttctgtgagcttcttggttgt Alignment from GeneWise GGAGGAGGAAATGGAGACAGATACTCGCTCATCTCTGGGACAGTCAGCATCAGAGACTGAGGAGGACACGGTGTCCATATCCAAAAAAGAG agcaagtttttacagttagaaaaggtcagtcacagatgtgcctcttgcagagAAAGAAGAAATGGAGACAGTCACTCGCTCATCTCCTGGGACCATCTGCATCAGAGACTGAGGAAGACACAGTGTCCATATCTAAAAAAGAGgtatgagtttagaaggagtaatgccacttttctgtgagcttcttggttgt #### Sf3b2_ID916_2 --> 2 - 0 Original Alignment ggAGTCGCGAGGAGTTA-GTAGAGCGGCTGCAGACCTACACCCGTCAG tggagctcttgtctactcaggagcatagcctgtgttcctttttggctcagggAGTCGTGAGGAATTACGTAGAGAGGCTGCAGACCTATACCCGTCAGgtgaggatttccagtaggctatgtaccaagatttctgaagtcacctaaga Alignment from CESAR ggAGTCGCGAGGAGTTA-GTAGAGCGGCTGCAGACCTACACCCGTCAG tggagctcttgtctactcaggagcatagcctgtgttcctttttggctcagggAGTCGTGAGGAATTACGTAGAGAGGCTGCAGACCTATACCCGTCAGgtgaggatttccagtaggctatgtaccaagatttctgaagtcacctaaga Alignment from Spaln_aa2Genome GGAGTCGCGAGGAGTTA-GTAGAGCGGCTGCAGACCTACACCCGTCAG tggagctcttgtctactcaggagcatagcctgtgttcctttttggctcagGGAGTCGTGAGGAATTAcGTAGAGAGGCTGCAGACCTATACCCGTCAGgtgaggatttccagtaggctatgtaccaagatttctgaagtcacctaaga Alignment from Spaln_nt2Genome GGAGTCGCGAGGAGTTA-GTAGAGCGGCTGCAGACCTACACCCGTCAG tggagctcttgtctactcaggagcatagcctgtgttcctttttggctcagGGAGTCGTGAGGAATTACGTAGAGAGGCTGCAGACCTATACCCGTCAGgtgaggatttccagtaggctatgtaccaagatttctgaagtcacctaaga Alignment from Pairagon GGAGTCGCGAGGAGTTA-GTAGAGCGGCTGCAGACCTACACCCGTCAG tggagctcttgtctactcaggagcatagcctgtgttcctttttggctcagGGAGTCGTGAGGAATTACGTAGAGAGGCTGCAGACCTATACCCGTCAGgtgaggatttccagtaggctatgtaccaagatttctgaagtcacctaaga Alignment from Exonerate_protein2genome GGAGTCGCGAGGAGTTA-GTAGAGCGGCTGCAGACCTACACCCGTCAG tggagctcttgtctactcaggagcatagcctgtgttcctttttggctcagGGAGTCGTGAGGAATTACGTAGAGAGGCTGCAGACCTATACCCGTCAGgtgaggatttccagtaggctatgtaccaagatttctgaagtcacctaaga Alignment from Exonerate_coding2genome TACACCCG TGGAGCTCttgtctactcaggagcatagcctgtgttcctttttggctcagggagtcgtgaggaattacgtagagaggctgcagacctatacccgtcaggtgaggatttccagtaggctatgtaccaagatttctgaagtcacctaaga Alignment from GeneWise TACACCCGT- TGGAGCTCTTgtctactcaggagcatagcctgtgttcctttttggctcagggagtcgtgaggaattacgtagagaggctgcagacctatacccgtcaggtgaggatttccagtaggctatgtaccaagatttctgaagtcacctaaga #### Sfxn2_ID9969_7 --> 0 - 1 Original Alignment AGAGCTGCGGCTGTGGGCATC-GCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCT---GGCATGa cctggacagctgaagcatgatccctggttgccaccacctccgtgttccagAGAGCAGCAACTGTGGCCATCCACACAAGTGGTTATCTCTCGAATCTCAATGGCAGCACCTGCTGGCATGagtaggtttgattagggtgagacatattttagtaataaactggtgctacat Alignment from CESAR AGAGCTGCGGCTGTGGGCATC-GCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCT---GGCATGa cctggacagctgaagcatgatccctggttgccaccacctccgtgttccagAGAGCAGCAACTGTGGCCATCCACACAAGTGGTTATCTCTCGAATCTCAATGGCAGCACCTGCTGGCATGagtaggtttgattagggtgagacatattttagtaataaactggtgctacat Alignment from Spaln_aa2Genome AGAGCTGCGGCTGTGGGCATC-GCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCT---GGCATGA cctggacagctgaagcatgatccctggttgccaccacctccgtgttccagAGAGCAGCAACTGTGGCCATCcACACAAGTGGTTATCTCTCGAATCTCAATGGCAGCACCTGCTGGCATGAgtaggtttgattagggtgagacatattttagtaataaactggtgctacat Alignment from Spaln_nt2Genome AGAGCTGCGGCTGTGGGCATCG-CACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCTG---GCATGA cctggacagctgaagcatgatccctggttgccaccacctccgtgttccagAGAGCAGCAACTGTGGCCATCCACACAAGTGGTTATCTCTCGAATCTCAATGGCAGCACCTGCTGGCATGAgtaggtttgattagggtgagacatattttagtaataaactggtgctacat Alignment from Pairagon AGAGCTGCGGCTGTGGGCAT-CGCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCTG---GCATGA cctggacagctgaagcatgatccctggttgccaccacctccgtgttccagAGAGCAGCAACTGTGGCCATCCACACAAGTGGTTATCTCTCGAATCTCAATGGCAGCACCTGCTGGCATGAgtaggtttgattagggtgagacatattttagtaataaactggtgctacat Alignment from Exonerate_protein2genome AGAGCTGCGGCTGTGGGCATC-GCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCT---GGCATGA cctggacagctgaagcatgatccctggttgccaccacctccgtgttccagAGAGCAGCAACTGTGGCCATCCACACAAGTGGTTATCTCTCGAATCTCAATGGCAGCACCTGCTGGCATGAgtaggtttgattagggtgagacatattttagtaataaactggtgctacat Alignment from Exonerate_coding2genome AGGGCATCTGTGTGAAGGACAGGAACCAAAATGAGCTTGGCCATTCTCAGAGAGCTGCGGCTGTGGGCATC-GCACAAGTGGTTATCTCTCGGATCACCATGGCAGCCCCT---GGCATGA CCTGGACAGCTGAAGCATGATCCCTGGTTGCCACCACCTCCGTGTTCCAGAGAGCAGCAACTGTGGCCATCCACACAAGTGGTTATCTCTCGAATCTCAATGGCAGCACCTGCTGGCATGAgtaggtttgattagggtgagacatattttagtaataaactggtgctacat Alignment from GeneWise cctggacagctgaagcatgatccctggttgccaccacctccgtgttccagagagcagcaactgtggccatccacacaagtggttatctctcgaatctcaatggcagcacctgctggcatgagtaggtttgattagggtgagacatattttagtaataaactggtgctacat #### Sfxn3_ID9285_3 --> 1 - 2 Original Alignment gAAGACTCCGACTGTGGTGTTC-TGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGca ggatcagtggactgggtttgggggtatagacccatctcctatccctccagaAAGACTCCCACTGTGGTGTTTCTGGCAGTGGGTCAATCAATCATTTAATGCTATCGTTAACTACTCTAATCGGAGTGGAGATGCCCCCATCACTGTCaggtaaatcaccctcatccacaggcattcctggtccccatggctcccgtgtc Alignment from CESAR gAAGACTCCGACTGTGGTG-TTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGca ggatcagtggactgggtttgggggtatagacccatctcctatccctccagaAAGACTCCCACTGTGGTGTTTCTGGCAGTGGGTCAATCAATCATTTAATGCTATCGTTAACTACTCTAATCGGAGTGGAGATGCCCCCATCACTGTCaggtaaatcaccctcatccacaggcattcctggtccccatggctcccgtgtc Alignment from Spaln_aa2Genome GAAGACTCCGACTGTGGTGTTC-TGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ggatcagtggactgggtttgggggtatagacccatctcctatccctccagAAAGACTCCCACTGTGGTGTTTcTGGCAGTGGGTCAATCAATCATTTAATGCTATCGTTAACTACTCTAATCGGAGTGGAGATGCCCCCATCACTGTCAGgtaaatcaccctcatccacaggcattcctggtccccatggctcccgtgtc Alignment from Spaln_nt2Genome GAAGACTCCGACTGTGGTG-TTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ggatcagtggactgggtttgggggtatagacccatctcctatccctccagAAAGACTCCCACTGTGGTGTTTCTGGCAGTGGGTCAATCAATCATTTAATGCTATCGTTAACTACTCTAATCGGAGTGGAGATGCCCCCATCACTGTCAGgtaaatcaccctcatccacaggcattcctggtccccatggctcccgtgtc Alignment from Pairagon GAAGACTCCGACTGTGGTG-TTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ggatcagtggactgggtttgggggtatagacccatctcctatccctccagAAAGACTCCCACTGTGGTGTTTCTGGCAGTGGGTCAATCAATCATTTAATGCTATCGTTAACTACTCTAATCGGAGTGGAGATGCCCCCATCACTGTCAGgtaaatcaccctcatccacaggcattcctggtccccatggctcccgtgtc Alignment from Exonerate_protein2genome GAAGACTCCGACTGTGGTG-TTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ggatcagtggactgggtttgggggtatagacccatctcctatccctccagAAAGACTCCCACTGTGGTGTTTCTGGCAGTGGGTCAATCAATCATTTAATGCTATCGTTAACTACTCTAATCGGAGTGGAGATGCCCCCATCACTGTCAGgtaaatcaccctcatccacaggcattcctggtccccatggctcccgtgtc Alignment from Exonerate_coding2genome GAAGACTCCGACTGTGGTG-TTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ggatcagtggactgggtttgggggtatagacccatctcctatccctccagAAAGACTCCCACTGTGGTGTTTCTGGCAGTGGGTCAATCAATCATTTAATGCTATCGTTAACTACTCTAATCGGAGTGGAGATGCCCCCATCACTGTCAGgtaaatcaccctcatccacaggcattcctggtccccatggctcccgtgtc Alignment from GeneWise GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATTGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ggatcagtggactgggtttgggggtatagacccatctcctatccctccagaaagA---CTCCCACTGTGGTGTTTCTGGCAGTGGGTCAATCAATCATTTAATGCTATCGTTAACTACTCTAATCGGAGTGGAGATGCCCCCATCACTGTCAGgtaaatcaccctcatccacaggcattcctggtccccatggctcccgtgtc #### Sfxn3_ID9286_4 --> 1 - 0 Original Alignment gCAGTTGGGGACAGCCTATGTGAGTGCC-ACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaattttggggcactacggacttcgtaaatccttttgttttcacaggCAGTTAGGGACAGCCTATGTGAGTGCCCACCACTGGAGCTGTGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtgaggtctccctccactctaagcctttcctgaattatttatcccatgtc Alignment from CESAR gCAGTTGGGGACAGCCTATGTGAGTGCC-ACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaattttggggcactacggacttcgtaaatccttttgttttcacaggCAGTTAGGGACAGCCTATGTGAGTGCCCACCACTGGAGCTGTGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtgaggtctccctccactctaagcctttcctgaattatttatcccatgtc Alignment from Spaln_aa2Genome GCAGTTGGGGACAGCCTATGTGAGTGCC-ACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaattttggggcactacggacttcgtaaatccttttgttttcacagGCAGTTAGGGACAGCCTATGTGAGTGCCcACCACTGGAGCTGTGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtgaggtctccctccactctaagcctttcctgaattatttatcccatgtc Alignment from Spaln_nt2Genome GCAGTTGGGGACAGCCTATGTGAGTG-CCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaattttggggcactacggacttcgtaaatccttttgttttcacagGCAGTTAGGGACAGCCTATGTGAGTGCCCACCACTGGAGCTGTGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtgaggtctccctccactctaagcctttcctgaattatttatcccatgtc Alignment from Pairagon GCAGTTGGGGACAGCCTATGTGAGTG-CCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaattttggggcactacggacttcgtaaatccttttgttttcacagGCAGTTAGGGACAGCCTATGTGAGTGCCCACCACTGGAGCTGTGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtgaggtctccctccactctaagcctttcctgaattatttatcccatgtc Alignment from Exonerate_protein2genome GCAGTTGGGGACAGCCTATGTGAGTGCC-ACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaattttggggcactacggacttcgtaaatccttttgttttcacagGCAGTTAGGGACAGCCTATGTGAGTGCCCACCACTGGAGCTGTGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtgaggtctccctccactctaagcctttcctgaattatttatcccatgtc Alignment from Exonerate_coding2genome GCAGTTGGGGACAGCCTATGTGAGTGCC-ACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaattttggggcactacggacttcgtaaatccttttgttttcacagGCAGTTAGGGACAGCCTATGTGAGTGCCCACCACTGGAGCTGTGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtgaggtctccctccactctaagcctttcctgaattatttatcccatgtc Alignment from GeneWise GCAGTTGGGGACAGCCTATGTGAGT-GCCACCACTGGGGCTGTGGCTACTGCTCTGGGACTCAAGTCTCTCACCAAG cttttaattttggggcactacggacttcgtaaatccttttgttttcacagGCAGTTAGGGACAGCCTATGTGAGTGCCCACCACTGGAGCTGTGGCTACTGCTCTGGGACTAAAGTCTCTGACCAAGgtgaggtctccctccactctaagcctttcctgaattatttatcccatgtc #### Sipa1_ID1140_12 --> 2 - 1 Original Alignment ttATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTG-GAGTCACTGTCCCGGGAGg agggttgacacagttaccatccaccttttgatttcccttttccctgacagttATGCCAGAAGCTGCTACTGAGACCTTGGAT---GAATGGCAGTCCATCTCAGAAATCACCTCCACTTGCAACACAATTTTGCGAGTCACTGTCTCGGGAAggtaaggctgccagttggatattagctccctcacgctctctccttgcatct Alignment from CESAR ttATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTG-GAGTCACTGTCCCGGGAGg agggttgacacagttaccatccaccttttgatttcccttttccctgacagttATGCCAGAAGCTGCTACTGAGACCTTG---GATGAATGGCAGTCCATCTCAGAAATCACCTCCACTTGCAACACAATTTTGCGAGTCACTGTCTCGGGAAggtaaggctgccagttggatattagctccctcactctcttcttccttctgc Alignment from Spaln_aa2Genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTG-GAGTCACTGTCCCGGGAGG agggttgacacagttaccatccaccttttgatttcccttttccctgacagTTATGCCAGAAGCTGCTACTGAGACCTTG---GATGAATGGCAGTCCATCTCAGAAATCACCTCCACTTGCAACACAATTTTGcGAGTCACTGTCTCGGGAAGgtaaggctgccagttggatattagctccctcacgctctctccttgcatct Alignment from Spaln_nt2Genome GTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTG-GAGTCACTGTCCCGGGAGG agggttgacacagttaccatccaccttttgatttcccttttccctgacagttatgccagaagctgctactgagaccttggatgaatggcagTCCATCTCAGAAATCACCTCCACTTG-CAACACAATTTTGCGAGTCACTGTCTCGGGAAGgtaaggctgccagttggatattagctccctcacgctctctccttgcatct Alignment from Pairagon TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTG-GAGTCACTGTCCCGGGAGG agggttgacacagttaccatccaccttttgatttcccttttccctgacagTTATGCCAGAAGCTGCTACTGAGACCTT---GGATGAATGGCAGTCCATCTCAGAAATCACCTCCACTTGCAACACAATTTTGCGAGTCACTGTCTCGGGAAGgtaaggctgccagttggatattagctccctcacgctctctccttgcatct Alignment from Exonerate_protein2genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTG-GAGTCACTGTCCCGGGAGG agggttgacacagttaccatccaccttttgatttcccttttccctgacagTTATGCCAGAAGCTGCTACTGAGACCTTG---GATGAATGGCAGTCCATCTCAGAAATCACCTCCACTTGCAACACAATTTTGCGAGTCACTGTCTCGGGAAGgtaaggctgccagttggatattagctccctcacgctctctccttgcatct Alignment from Exonerate_coding2genome TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATTCTG-GAGTCACTGTCCCGGGAGG agggttgacacagttaccatccaccttttgatttcccttttccctgacagTTATGCCAGAAGCTGCTACTGAGACCTTG---GATGAATGGCAGTCCATCTCAGAAATCACCTCCACTTGCAACACAATTTTGCGAGTCACTGTCTCGGGAAGgtaaggctgccagttggatattagctccctcacgctctctccttgcatct Alignment from GeneWise TTATGTCGGAAGCTGGCAGTGAGACCCTGGAGGATGAGTGGCAGTCCATCTCAGAGATCGCCTCCACTTGCAACACAATT-CTGGAGTCACTGTCCCGGGAG--------------------------------------------------- agggttgacacagttaccatccaccttttgatttcccttttccctgacagTTATGCCAGAAGCTGCTACTGAGACCTTG---GATGAATGGCAGTCCATCTCAGAAATCACCTCCACTTGCAACACAATTTTGCGAGTCACTGTCTCGGGAAGGTAAGGCTGCCAGTTGGATATTAGCTCCCTCACGCTCTCTCCTTGCATCT #### Sipa1_ID1141_11 --> 0 - 1 Original Alignment GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTG-TCTCTGCGGAATTCCATCAGTAAGa gtcaagttaacattgaatgccatattatatgttcaccactacctttgcagGATCAGTCGGGAAGCCCTAGTAGCCATGAGGATACCAGTGACTCAGGCCCAGAATTGAAGGCCTCCATCCTGCCCAGAACCCTACTCGGTACGGAATTCCATCAGTAAAagtaagttggggaaacagggcaggaggagaagactgtccctaacccctgtg Alignment from CESAR GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTG-TCTCTGCGGAATTCCATCAGTAAGa gtcaagttaacattgaatgccatattatatgttcaccactacctttgcagGATCAGTCGGGAAGCCCTAGTAGCCATGAGGATACCAGTGACTCAGGCCCAGAATTGAAGGCCTCCATCCTGCCCAGAACCCTACTCGGTACGGAATTCCATCAGTAAAagtaagttggggaaacagggcaggaggagaagactgtccctaacccctgtg Alignment from Spaln_aa2Genome GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTG-TCTCTGCGGAATTCCATCAGTAAGA gtcaagttaacattgaatgccatattatatgttcaccactacctttgcagGATCAGTCGGGAAGCCCTAGTAGCCATGAGGATACCAGTGACTCAGGCCCAGAATTGAAGGCCTCCATCCTGCCCAGAACCCTAcTCGGTACGGAATTCCATCAGTAAAAgtaagttggggaaacagggcaggaggagaagactgtccctaacccctgtg Alignment from Spaln_nt2Genome GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTG-TCTCTGCGGAATTCCATCAGTAAGA gtcaagttaacattgaatgccatattatatgttcaccactacctttgcagGATCAGTCGGGAAGCCCTAGTAGCCATGAGGATACCAGTGACTCAGGCCCAGAATTGAAGGCCTCCATCCTGCCCAGAACCCTACTCGGTACGGAATTCCATCAGTAAAAgtaagttggggaaacagggcaggaggagaagactgtccctaacccctgtg Alignment from Pairagon GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTG-TCTCTGCGGAATTCCATCAGTAAGA gtcaagttaacattgaatgccatattatatgttcaccactacctttgcagGATCAGTCGGGAAGCCCTAGTAGCCATGAGGATACCAGTGACTCAGGCCCAGAATTGAAGGCCTCCATCCTGCCCAGAACCCTACTCGGTACGGAATTCCATCAGTAAAAgtaagttggggaaacagggcaggaggagaagactgtccctaacccctgtg Alignment from Exonerate_protein2genome GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTG-TCTCTGCGGAATTCCATCAGTAAGA gtcaagttaacattgaatgccatattatatgttcaccactacctttgcagGATCAGTCGGGAAGCCCTAGTAGCCATGAGGATACCAGTGACTCAGGCCCAGAATTGAAGGCCTCCATCCTGCCCAGAACCCTACTCGGTACGGAATTCCATCAGTAAAAgtaagttggggaaacagggcaggaggagaagactgtccctaacccctgtg Alignment from Exonerate_coding2genome GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTG-TCTCTGCGGAATTCCATCAGTAAGA gtcaagttaacattgaatgccatattatatgttcaccactacctttgcagGATCAGTCGGGAAGCCCTAGTAGCCATGAGGATACCAGTGACTCAGGCCCAGAATTGAAGGCCTCCATCCTGCCCAGAACCCTACTCGGTACGGAATTCCATCAGTAAAAgtaagttggggaaacagggcaggaggagaagactgtccctaacccctgtg Alignment from GeneWise -----------------------------------------------CAGGACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCCTGCCCAGAACCTTG-TCTCTGCGGAATTCCATCAGTAAGA GTCAAGTTAACATTGAATGCCATATTATATGTTCACCACTACCTTTGCAGGATCAGTCGGGAAGCCCTAGTAGCCATGAGGATACCAGTGACTCAGGCCCAGAATTGAAGGCCTCCATCCTGCCCAGAACCCTACTCGGTACGGAATTCCATCAGTAAAAgtaagttggggaaacagggcaggaggagaagactgtccctaacccctgtg #### Sipa1_ID1147_5 --> 2 - 0 Original Alignment cgGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACG-ATGCTGCCTTACACGCCTAATAACCAGCAACAG tatccatgcccacactcccttctctctggtcatttttcctccaaccccagcgGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATCATGTTTCACGTGTCCACGCATGCTGCCTTACACACCTAATAACCAGCAACAGgtgagtagagaatttgagtagccaagcccagaagagactactgggaagca Alignment from CESAR cgGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACG-ATGCTGCCTTACACGCCTAATAACCAGCAACAG tatccatgcccacactcccttctctctggtcatttttcctccaaccccagcgGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATCATGTTTCACGTGTCCACGCATGCTGCCTTACACACCTAATAACCAGCAACAGgtgagtagagaatttgagtagccaagcccagaagagactactgggaagca Alignment from Spaln_aa2Genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACG-ATGCTGCCTTACACGCCTAATAACCAGCAACAG tatccatgcccacactcccttctctctggtcatttttcctccaaccccagCGGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATCATGTTTCACGTGTCCACGcATGCTGCCTTACACACCTAATAACCAGCAACAGgtgagtagagaatttgagtagccaagcccagaagagactactgggaagca Alignment from Spaln_nt2Genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACG-ATGCTGCCTTACACGCCTAATAACCAGCAACAG tatccatgcccacactcccttctctctggtcatttttcctccaaccccagCGGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATCATGTTTCACGTGTCCACGCATGCTGCCTTACACACCTAATAACCAGCAACAGgtgagtagagaatttgagtagccaagcccagaagagactactgggaagca Alignment from Pairagon CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACG-ATGCTGCCTTACACGCCTAATAACCAGCAACAG tatccatgcccacactcccttctctctggtcatttttcctccaaccccagCGGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATCATGTTTCACGTGTCCACGCATGCTGCCTTACACACCTAATAACCAGCAACAGgtgagtagagaatttgagtagccaagcccagaagagactactgggaagca Alignment from Exonerate_protein2genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACG-ATGCTGCCTTACACGCCTAATAACCAGCAACAG tatccatgcccacactcccttctctctggtcatttttcctccaaccccagCGGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATCATGTTTCACGTGTCCACGCATGCTGCCTTACACACCTAATAACCAGCAACAGgtgagtagagaatttgagtagccaagcccagaagagactactgggaagca Alignment from Exonerate_coding2genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCCACG-ATGCTGCCTTACACGCCTAATAACCAGCAACAG tatccatgcccacactcccttctctctggtcatttttcctccaaccccagCGGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATCATGTTTCACGTGTCCACGCATGCTGCCTTACACACCTAATAACCAGCAACAGgtgagtagagaatttgagtagccaagcccagaagagactactgggaagca Alignment from GeneWise CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGACCATGAGATCATGTTTCACGTGTCC-ACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tatccatgcccacactcccttctctctggtcatttttcctccaaccccagCGGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCATGAGATCATGTTTCACGTGTCCACGCATGCTGCCTTACACACCTAATAACCAGCAACAGgtgagtagagaatttgagtagccaagcccagaagagactactgggaagca #### Sipa1_ID1150_2 --> 2 - 0 Original Alignment aaCACCAGAACTTCTTTGGGCTG-GATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG agagccactttccaaccaaccaacaacactacgatcatcttgttttctagaaCACCAAAACTTCTTTGGGCTACGACGAGGCACTGGGCCCTGTGGCTTTGAGTCTTCAACGGGAGGAAAAGGAGGGCAGTGGAGGGGCCCCCCTACACAGCTTCCGAGTCATTGTGCGAACCATGCAGgtactggaaatcacagggtgcaatagccttgtctcacttactctgtctca Alignment from CESAR aaCACCAGAACTTCTTTGGGCTG-GATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG agagccactttccaaccaaccaacaacactacgatcatcttgttttctagaaCACCAAAACTTCTTTGGGCTACGACGAGGCACTGGGCCCTGTGGCTTTGAGTCTTCAACGGGAGGAAAAGGAGGGCAGTGGAGGGGCCCCCCTACACAGCTTCCGAGTCATTGTGCGAACCATGCAGgtactggaaatcacagggtgcaatagcctatgtgctgtgttttaacccca Alignment from Spaln_aa2Genome AACACCAGAACTTCTTTGGGCTG-GATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG agagccactttccaaccaaccaacaacactacgatcatcttgttttctagAACACCAAAACTTCTTTGGGCTAcGACGAGGCACTGGGCCCTGTGGCTTTGAGTCTTCAACGGGAGGAAAAGGAGGGCAGTGGAGGGGCCCCCCTACACAGCTTCCGAGTCATTGTGCGAACCATGCAGgtactggaaatcacagggtgcaatagccttgtctcacttactctgtctca Alignment from Spaln_nt2Genome AACACCAGAACTTCTTTGGGCTG-GATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG agagccactttccaaccaaccaacaacactacgatcatcttgttttctagAACACCAAAACTTCTTTGGGCTACGACGAGGCACTGGGCCCTGTGGCTTTGAGTCTTCAACGGGAGGAAAAGGAGGGCAGTGGAGGGGCCCCCCTACACAGCTTCCGAGTCATTGTGCGAACCATGCAGgtactggaaatcacagggtgcaatagccttgtctcacttactctgtctca Alignment from Pairagon AACACCAGAACTTCTTTGGGCTG-GATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG agagccactttccaaccaaccaacaacactacgatcatcttgttttctagAACACCAAAACTTCTTTGGGCTACGACGAGGCACTGGGCCCTGTGGCTTTGAGTCTTCAACGGGAGGAAAAGGAGGGCAGTGGAGGGGCCCCCCTACACAGCTTCCGAGTCATTGTGCGAACCATGCAGgtactggaaatcacagggtgcaatagccttgtctcacttactctgtctca Alignment from Exonerate_protein2genome AACACCAGAACTTCTTTGGGCTG-GATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG agagccactttccaaccaaccaacaacactacgatcatcttgttttctagAACACCAAAACTTCTTTGGGCTACGACGAGGCACTGGGCCCTGTGGCTTTGAGTCTTCAACGGGAGGAAAAGGAGGGCAGTGGAGGGGCCCCCCTACACAGCTTCCGAGTCATTGTGCGAACCATGCAGgtactggaaatcacagggtgcaatagccttgtctcacttactctgtctca Alignment from Exonerate_coding2genome AACACCAGAACTTCTTTGGGCTG-GATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACCACGCAG agagccactttccaaccaaccaacaacactacgatcatcttgttttctagAACACCAAAACTTCTTTGGGCTACGACGAGGCACTGGGCCCTGTGGCTTTGAGTCTTCAACGGGAGGAAAAGGAGGGCAGTGGAGGGGCCCCCCTACACAGCTTCCGAGTCATTGTGCGAACCATGCAGgtactggaaatcacagggtgcaatagccttgtctcacttactctgtctca Alignment from GeneWise AACACCAGAACTTCTTTGGG-CTGGATGAGGCGCTGGGTCCGGTGGCCGTGAGCCTGCGACGGGAGGAGAAAGAGGGCAGCGGAGGGGGCACCCTACACAGCTACCGGGTCATCGTGCGGACC---------------------------------------------------ACGCA agagccactttccaaccaaccaacaacactacgatcatcttgttttctagAACACCAAAACTTCTTTGGGCTACGACGAGGCACTGGGCCCTGTGGCTTTGAGTCTTCAACGGGAGGAAAAGGAGGGCAGTGGAGGGGCCCCCCTACACAGCTTCCGAGTCATTGTGCGAACCATGCAGGTACTGGAAATCACAGGGTGCAATAGCCTTGTCTCACTTACTCTGTCTCA #### Slc18a2_ID12939_7 --> 2 - 0 Original Alignment ctATTCAGCTCTTTGTGCTCCAGCCATCC-CGAGTGCAGCCAGAA gccaggtatgggatgcttgtgttatatctcttccctccccacatccccagctATTCAGCTCTTTGTAATTCAA---TCCCTGCGTACTACCAGATgtaatgagctgggagttacaacatggttaagtttttcttcccttctttgt Alignment from CESAR ctATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAA gccaggtatgggatgcttgtgttatatctcttccctccccacatccccagctATTCAGCTCTTTGTAATTCAATCCCTGC--GTACTACCAGATgtaatgagctgggagttacaacatggttaagtttttctgctaattgtctc Alignment from Spaln_aa2Genome CTATTCAGCTCTTTGTGCTCCAGCCATCCCGA---GTGCAGCCAGAAAG gccaggtatgggatgcttgtgttatatctcttccctccccacatccccagCTATTCAGCTCTTTGTAATTCAATCCCTGCGTACTACCAGATGTAATGAgctgggagttacaacatggttaagtttttcttcccttctttgt Alignment from Spaln_nt2Genome GCCAG AA GCCAGgtatgggatgcttgtgttatatctcttccctccccacatccccagctattcagctctttgtaattcaatccctgcgtactaccagATgtaatgagctgggagttacaacatggttaagtttttcttcccttctttgt Alignment from Pairagon CTATTCAGCTCTTT gccaggtatgggatgcttgtgttatatctcttccctccccacatccccagCTATTCAGCTCTTTgtaattcaatccctgcgtactaccagatgtaatgagctgggagttacaacatggttaagtttttcttcccttctttgt Alignment from Exonerate_protein2genome GCAGC GCCAGgtatgggatgcttgtgttatatctcttccctccccacatccccagctattcagctctttgtaattcaatccctgcgtactaccagatgtaatgagctgggagttacaacatggttaagtttttcttcccttctttgt Alignment from Exonerate_coding2genome G gccaggtatgggatgcttgtgttatatctcttccctccccacatccccagctattcagctctttgtaattcaatccctgcgtactaccagatgtaatgagctgggagttacaacatggttaagtttttcttcccttctttgT Alignment from GeneWise CTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTG gccaggtatgggatgcttgtgttatatctcttccctccccacatccccagctattcagctctttgtaattcaatccctgcgtactaccagatgtaatgagctgggagTTACAACATGGTTAAGTTTTTCTTCCCTTCTTTGT #### Slc18a2_ID12940_8 --> 0 - 1 Original Alignment AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGAC-CCATACATTCTCATCGCTGCAg tgggagttacaacatggttaagtttttctgctaattgtctctcctttcagAGTCAGAAGGGGACACCTCTCACAACCTTACTGGAAGATCCCATACATTCTGATAGCTGCAggtgagtggactttaattttttggcagcatgaaacatactagagggataga Alignment from CESAR AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGAC-CCATACATTCTCATCGCTGCAg tgggagttacaacatggttaagtttttctgctaattgtctctcctttcagAGTCAGAAGGGGACACCTCTCACAACCTTACTGGAAGATCCCATACATTCTGATAGCTGCAggtgagtggactttaattttttggcagcatgaaacatactagagggataga Alignment from Spaln_aa2Genome AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGAC-CCATACATTCTCATCGCTGCAG tgggagttacaacatggttaagtttttctgctaattgtctctcctttcagAGTCAGAAGGGGACACCTCTCACAACCTTACTGGAAGATcCCATACATTCTGATAGCTGCAGgtgagtggactttaattttttggcagcatgaaacatactagagggataga Alignment from Spaln_nt2Genome AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGA-CCCATACATTCTCATCGCTGCAG tgggagttacaacatggttaagtttttctgctaattgtctctcctttcagAGTCAGAAGGGGACACCTCTCACAACCTTACTGGAAGATCCCATACATTCTGATAGCTGCAGgtgagtggactttaattttttggcagcatgaaacatactagagggataga Alignment from Pairagon AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGA-CCCATACATTCTCATCGCTGCAG tgggagttacaacatggttaagtttttctgctaattgtctctcctttcagAGTCAGAAGGGGACACCTCTCACAACCTTACTGGAAGATCCCATACATTCTGATAGCTGCAGgtgagtggactttaattttttggcagcatgaaacatactagagggataga Alignment from Exonerate_protein2genome AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGAC-CCATACATTCTCATCGCTGCAG tgggagttacaacatggttaagtttttctgctaattgtctctcctttcagAGTCAGAAGGGGACACCTCTCACAACCTTACTGGAAGATCCCATACATTCTGATAGCTGCAGgtgagtggactttaattttttggcagcatgaaacatactagagggataga Alignment from Exonerate_coding2genome AGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAGGAC-CCATACATTCTCATCGCTGCAG tgggagttacaacatggttaagtttttctgctaattgtctctcctttcagAGTCAGAAGGGGACACCTCTCACAACCTTACTGGAAGATCCCATACATTCTGATAGCTGCAGgtgagtggactttaattttttggcagcatgaaacatactagagggataga Alignment from GeneWise CTATTCAGCTCTTTGTGCTCCAGCCATCCCGAGTGCAGCCAGAAAGTCAGAAGGGGACACCTCTTACGACCTTGCTGAAG-GACCCATACATTCTCATCGCTGCAG tgggagTTACAACATGGTTAAGTTTTTCTGCTAATTGTCTCTCCTTTCAGAGTCAGAAGGGGACACCTCTCACAACCTTACTGGAAGATCCCATACATTCTGATAGCTGCAGgtgagtggactttaattttttggcagcatgaaacatactagagggataga #### Slc18a2_ID12944_11 --> 1 - 0 Original Alignment gTGGCTGTGTGCTCTT-CTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT cgaacacatggatccagttttccctcaccgcactgctttgtctttctcagaTGGCTGTGTGCCCTTCTTGGGAATGACAGTAGTAGGCATCACCATTTTATGTgtatgtcaggggaggcagtttccttagttccaaatgttgaatctcaatca Alignment from CESAR gTGGCTGTGTGCTCTT-CTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT cgaacacatggatccagttttccctcaccgcactgctttgtctttctcagaTGGCTGTGTGCCCTTCTTGGGAATGACAGTAGTAGGCATCACCATTTTATGTgtatgtcaggggaggcagtttccttagttccaaatgttgaatctcaatca Alignment from Spaln_aa2Genome GTGGCTGTGTGCTCTTCTGGGA-ATGATAGTTGTTGGGATCAGCATTTTATGT cgaacacatggatccagttttccctcaccgcactgctttgtctttctcagATGGCTGTGTGCCCTTCTTGGGaATGACAGTAGTAGGCATCACCATTTTATGTgtatgtcaggggaggcagtttccttagttccaaatgttgaatctcaatca Alignment from Spaln_nt2Genome GTGGCTGTGTGCTCTTCT-GGGAATGATAGTTGTTGGGATCAGCATTTTATGT cgaacacatggatccagttttccctcaccgcactgctttgtctttctcagATGGCTGTGTGCCCTTCTTGGGAATGACAGTAGTAGGCATCACCATTTTATGTgtatgtcaggggaggcagtttccttagttccaaatgttgaatctcaatca Alignment from Pairagon GTGGCTGTGTGCTCTTC-TGGGAATGATAGTTGTTGGGATCAGCATTTTATGT cgaacacatggatccagttttccctcaccgcactgctttgtctttctcagATGGCTGTGTGCCCTTCTTGGGAATGACAGTAGTAGGCATCACCATTTTATGTgtatgtcaggggaggcagtttccttagttccaaatgttgaatctcaatca Alignment from Exonerate_protein2genome GTGGCTGTGTGCTCTT-CTGGGAATGATAGTTGTTGGGATCAGCATTTTATGT cgaacacatggatccagttttccctcaccgcactgctttgtctttctcagATGGCTGTGTGCCCTTCTTGGGAATGACAGTAGTAGGCATCACCATTTTATGTgtatgtcaggggaggcagtttccttagttccaaatgttgaatctcaatca Alignment from Exonerate_coding2genome cgaacacatggatccagttttccctcaccgcactgctttgtctttctcagatggctgtgtgcccttcttgggaatgacagtagtaggcatcaccattttatgtgtatgtcaggggaggcagtttccttagttccaaatgttgaatctcaatca Alignment from GeneWise cgaacacatggatccagttttccctcaccgcactgctttgtctttctcagatggctgtgtgcccttcttgggaatgacagtagtaggcatcaccattttatgtgtatgtcaggggaggcagtttccttagttccaaatgttgaatctcaatca #### Slc22a12_ID1789_8 --> 2 - 2 Original Alignment ggATGGGGGTCCTTCGCTCGGCCCTGGCT-GTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCag catgtgaagaatgccacaccctccactggactgtgtttctcccttctcagcgATGGGGGTCCTTCGCTCGGCTCTGGCTCGTGCTAGGATTGGGCTGCCTAGGTGGCGCCTTCACCTGCATCACCATTTTCTCTAGTGAGCTCTTCCCCACTGTCATCaggtgtgagccattagcccaaggatcacaccaccagaccagaaatgggcacc Alignment from CESAR ggATGGGGGTCCTTCGCTCGGCCCTGGCT-GTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCag catgtgaagaatgccacaccctccactggactgtgtttctcccttctcagcgATGGGGGTCCTTCGCTCGGCTCTGGCTCGTGCTAGGATTGGGCTGCCTAGGTGGCGCCTTCACCTGCATCACCATTTTCTCTAGTGAGCTCTTCCCCACTGTCATCaggtgtgagccattagcccaaggatcacaccaccagaccagaaatgggcacc Alignment from Spaln_aa2Genome GGATGGGGGTCCTTCGCTCGGCCCTGGCT-GTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG catgtgaagaatgccacaccctccactggactgtgtttctcccttctcagCGATGGGGGTCCTTCGCTCGGCTCTGGCTcGTGCTAGGATTGGGCTGCCTAGGTGGCGCCTTCACCTGCATCACCATTTTCTCTAGTGAGCTCTTCCCCACTGTCATCAGgtgtgagccattagcccaaggatcacaccaccagaccagaaatgggcacc Alignment from Spaln_nt2Genome GGATGGGGGTCCTTCGCTCGGCCCTGGCT-GTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG catgtgaagaatgccacaccctccactggactgtgtttctcccttctcagCGATGGGGGTCCTTCGCTCGGCTCTGGCTCGTGCTAGGATTGGGCTGCCTAGGTGGCGCCTTCACCTGCATCACCATTTTCTCTAGTGAGCTCTTCCCCACTGTCATCAGgtgtgagccattagcccaaggatcacaccaccagaccagaaatgggcacc Alignment from Pairagon GGATGGGGGTCCTTCGCTCGGCCCTGGCT-GTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG catgtgaagaatgccacaccctccactggactgtgtttctcccttctcagCGATGGGGGTCCTTCGCTCGGCTCTGGCTCGTGCTAGGATTGGGCTGCCTAGGTGGCGCCTTCACCTGCATCACCATTTTCTCTAGTGAGCTCTTCCCCACTGTCATCAGgtgtgagccattagcccaaggatcacaccaccagaccagaaatgggcacc Alignment from Exonerate_protein2genome GGATGGGGGTCCTTCGCTCGGCCCTGGCT-GTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG catgtgaagaatgccacaccctccactggactgtgtttctcccttctcagCGATGGGGGTCCTTCGCTCGGCTCTGGCTCGTGCTAGGATTGGGCTGCCTAGGTGGCGCCTTCACCTGCATCACCATTTTCTCTAGTGAGCTCTTCCCCACTGTCATCAGgtgtgagccattagcccaaggatcacaccaccagaccagaaatgggcacc Alignment from Exonerate_coding2genome GGATGGGGGTCCTTCGCTCGGCCCTGGCT-GTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG catgtgaagaatgccacaccctccactggactgtgtttctcccttctcagCGATGGGGGTCCTTCGCTCGGCTCTGGCTCGTGCTAGGATTGGGCTGCCTAGGTGGCGCCTTCACCTGCATCACCATTTTCTCTAGTGAGCTCTTCCCCACTGTCATCAGgtgtgagccattagcccaaggatcacaccaccagaccagaaatgggcacc Alignment from GeneWise GGATGGGGGTCCTTCGCTCGGCCCTG-GCTGTGCTGGGGCTGGGCTGCCTGGGGGGCGCCTTCACCTGCATCACCATCTTCTCCAGTGAGCTCTTCCCCACTGTGATCAG catgtgaagaatgccacaccctccactggactgtgtttctcccttctcagCGATGGGGGTCCTTCGCTCGGCTCTGGCTCGTGCTAGGATTGGGCTGCCTAGGTGGCGCCTTCACCTGCATCACCATTTTCTCTAGTGAGCTCTTCCCCACTGTCATCAGgtgtgagccattagcccaaggatcacaccaccagaccagaaatgggcacc #### Slc22a12_ID1790_7 --> 1 - 1 Original Alignment gTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTG-GTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATg gaggaattgacccaggctagtctatcttatgtgccttctccttcccacaggTTTTCCTTCGGCTTCACCTTTTATGGCCTAGCCATTGAC---------CTTGGAAGCAATATATTTCTCCTCCAGTCAATCATTGGGATAGTGGATTTCCCAGTAAAGACGGGTAGCTTGCTCTTGATCACACGTTTGGGCCAACACCTATGTCAGGTCAGCTTTCTGCGTC---CCTGGACTATGTATACTTTCCAATATACTGGTGCCCCATggtctggcatctcttgctgggggtgagcgtatagacagaaaactagtaatg Alignment from CESAR gTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATg gaggaattgacccaggctagtctatcttatgtgccttctccttcccacaggTTTTCCTTCGGCTTCACCTTTTATGGCCTAGCCATTGAC---------CTTGGAAGCAATATATTTCTCCTCCAGTCAATCATTGGGATAGTGGATTTCCCAGTAAAGACGGGTAGCTTGCTCTTGATCACACGTTTGGGCCAACACCTATGTCAGGTCAGCTTTCTG--CGTCCCTGGACTATGTATACTTTCCAATATACTGGTGCCCCATggtctggcatctcttgctgggggtgagcgtatagacagaaaactagtaatg Alignment from Spaln_aa2Genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gaggaattgacccaggctagtctatcttatgtgccttctccttcccacagGTTTTCCTTCGGCTTCACCTTTTATGGCCTAGCCATTGAC---------CTTGGAAGCAATATATTTCTCCTCCAGTCAATCATTGGGATAGTGGATTTCCCAGTAAAGACGGGTAGCTTGCTCTTGATCACACGTTTGGGCCAACACCTATGTCAGGTCAGCTTTCTGC--GTCCCTGGACTATGTATACTTTCCAATATACTGGTGCCCCATGgtctggcatctcttgctgggggtgagcgtatagacagaaaactagtaatg Alignment from Spaln_nt2Genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gaggaattgacccaggctagtctatcttatgtgccttctccttcccacagGTTTTCCTTCGGCTTCACCTTTTATGGCCTAGCCATTGA---------CCTTGGAAGCAATATATTTCTCCTCCAGTCAATCATTGGGATAGTGGATTTCCCAGTAAAGACGGGTAGCTTGCTCTTGATCACACGTTTGGGCCAACACCTATGTCAGGTCAGCTTTCTG--CGTCCCTGGACTATGTATACTTTCCAATATACTGGTGCCCCATGgtctggcatctcttgctgggggtgagcgtatagacagaaaactagtaatg Alignment from Pairagon GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gaggaattgacccaggctagtctatcttatgtgccttctccttcccacagGTTTTCCTTCGGCTTCACCTTTTATGGCCTAGCCATTGA---------CCTTGGAAGCAATATATTTCTCCTCCAGTCAATCATTGGGATAGTGGATTTCCCAGTAAAGACGGGTAGCTTGCTCTTGATCACACGTTTGGGCCAACACCTATGTCAGGTCAGCTTTCTG--CGTCCCTGGACTATGTATACTTTCCAATATACTGGTGCCCCATGgtctggcatctcttgctgggggtgagcgtatagacagaaaactagtaatg Alignment from Exonerate_protein2genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTG-GTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gaggaattgacccaggctagtctatcttatgtgccttctccttcccacagGTTTTCCTTCGGCTTCACCTTTTATGGCCTAGCCATTGAC---------CTTGGAAGCAATATATTTCTCCTCCAGTCAATCATTGGGATAGTGGATTTCCCAGTAAAGACGGGTAGCTTGCTCTTGATCACACGTTTGGGCCAACACCTATGTCAGGTCAGCTTTCTGCGTC---CCTGGACTATGTATACTTTCCAATATACTGGTGCCCCATGgtctggcatctcttgctgggggtgagcgtatagacagaaaactagtaatg Alignment from Exonerate_coding2genome GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTG-GTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gaggaattgacccaggctagtctatcttatgtgccttctccttcccacagGTTTTCCTTCGGCTTCACCTTTTATGGCCTAGCCATTGAC---------CTTGGAAGCAATATATTTCTCCTCCAGTCAATCATTGGGATAGTGGATTTCCCAGTAAAGACGGGTAGCTTGCTCTTGATCACACGTTTGGGCCAACACCTATGTCAGGTCAGCTTTCTGCGTC---CCTGGACTATGTATACTTTCCAATATACTGGTGCCCCATGgtctggcatctcttgctgggggtgagcgtatagacagaaaactagtaatg Alignment from GeneWise GTTTGCCTTTGGCTTCACCTTCTACGGCCTGGCCCTTGACCTGCAAGCCCTAGGAAGCAATATCTTCCTGCTCCAGGCACTCATCGGGATTGTGGACTTCCCGGTGAAGACAGGCAGCCTGCTGCTGATCAGCCGCTTGGGCCGGCGCCTCTGCCAGGTCAGCTTCCTGGTGCTCCCCGGACTCTGCATCCTGTCCAACATACTGGTGCCCCATG gaggaattgacccaggctagtctatcttatgtgccttctccttcccacagGTTTTCCTTCGGCTTCACCTTTTATGGCCTAGCCATTGACCTT---------GGAAGCAATATATTTCTCCTCCAGTCAATCATTGGGATAGTGGATTTCCCAGTAAAGACGGGTAGCTTGCTCTTGATCACACGTTTGGGCCAACACCTATGTCAGGTCAGCTTTCTGC--GTCCCTGGACTATGTATACTTTCCAATATACTGGTGCCCCATGgtctggcatctcttgctgggggtgagcgtatagacagaaaactagtaatg #### Slc22a12_ID1791_6 --> 0 - 2 Original Alignment GTGCTGCGGTCAGCTATGGAG-GAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCtg tggactgggggaggacctggagactttgaatttttaaatatgttttgtagGTACTGTGGTCAGCTATGGACCAAGGAACCAAGCAGGGACCAGGCCGGTGCCAGTCTTGGCACTTTACTTCATACACCTGGGTTGCGCCACCGAAGCATCATCTCTATGCTGTGCctgtatctccttctacctacaattgtcggccagtggaagttgccctttccct Alignment from CESAR GTGCTGCGGTCAGCTATGGAG-GAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCtg tggactgggggaggacctggagactttgaatttttaaatatgttttgtagGTACTGTGGTCAGCTATGGACCAAGGAACCAAGCAGGGACCAGGCCGGTGCCAGTCTTGGCACTTTACTTCATACACCTGGGTTGCGCCACCGAAGCATCATCTCTATGCTGTGCctgtatctccttctacctacaattgtcggccagtggaagttgccctttccct Alignment from Spaln_aa2Genome GTGCTGCGGTCAGCTATGGAGGAG-GAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG tggactgggggaggacctggagactttgaatttttaaatatgttttgtagGTACTGTGGTCAGCTATGGACCAAgGAACCAAGCAGGGACCAGGCCGGTGCCAGTCTTGGCACTTTACTTCATACACCTGGGTTGCGCCACCGAAGCATCATCTCTATGCTGTGCCTgtatctccttctacctacaattgtcggccagtggaagttgccctttccct Alignment from Spaln_nt2Genome GTGCTGCGGTCAGCTATGGAGGA-GGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG tggactgggggaggacctggagactttgaatttttaaatatgttttgtagGTACTGTGGTCAGCTATGGACCAAGGAACCAAGCAGGGACCAGGCCGGTGCCAGTCTTGGCACTTTACTTCATACACCTGGGTTGCGCCACCGAAGCATCATCTCTATGCTGTGCCTgtatctccttctacctacaattgtcggccagtggaagttgccctttccct Alignment from Pairagon GTGCTGCGGTCAGCTATGGA-GGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG tggactgggggaggacctggagactttgaatttttaaatatgttttgtagGTACTGTGGTCAGCTATGGACCAAGGAACCAAGCAGGGACCAGGCCGGTGCCAGTCTTGGCACTTTACTTCATACACCTGGGTTGCGCCACCGAAGCATCATCTCTATGCTGTGCCTgtatctccttctacctacaattgtcggccagtggaagttgccctttccct Alignment from Exonerate_protein2genome GTGCTGCGGTCAGCTATGGAGGAG-GAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG tggactgggggaggacctggagactttgaatttttaaatatgttttgtagGTACTGTGGTCAGCTATGGACCAAGGAACCAAGCAGGGACCAGGCCGGTGCCAGTCTTGGCACTTTACTTCATACACCTGGGTTGCGCCACCGAAGCATCATCTCTATGCTGTGCCTgtatctccttctacctacaattgtcggccagtggaagttgccctttccct Alignment from Exonerate_coding2genome GTGCTGCGGTCAGCTATGGAGGAG-GAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG tggactgggggaggacctggagactttgaatttttaaatatgttttgtagGTACTGTGGTCAGCTATGGACCAAGGAACCAAGCAGGGACCAGGCCGGTGCCAGTCTTGGCACTTTACTTCATACACCTGGGTTGCGCCACCGAAGCATCATCTCTATGCTGTGCCTgtatctccttctacctacaattgtcggccagtggaagttgccctttccct Alignment from GeneWise GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACCATCATCTCCATGCTGTGCTG tggactgggggaggacctggagactttgaatttttaaatatgttttgtaggtactgtggtcagCTA------------TGGACCAAGGAACCAAGCAGGGACCAGGCCGGTGCCAGTCTTGGCACTTTACTTCATACACCTGGGTTGCGCCACCGAAGCATCATCTCTATGCTGTGCCTgtatctccttctacctacaattgtcggccagtggaagttgccctttccct #### Slc22a20_ID1344_9 --> 1 - 2 Original Alignment gCAGATGGGGATGGGATTTGCTTCTGTCAATGCCCGCCTC-GGAGGCTTGGTGGCACCCCTGATCACCACACTTGGCGAGATCAGTCCAGTTCTGCCACCTGTATCCTTTGGTGCCACTTCAGTCTTGGCTGGAATGGCTGTCGCCTGCTTCCTGACTGAGACCCGCAATGTGCCACTGGTAGAAACTATTGCTGCAATGGAGAGAcg gagcatttttggaccaggcccatctcctctgactgacaatgcctttccaggCAAATGGGTATGGAGTTTGCTTCTGTCAATGCT---CTTCGGAGGTTTGGTGGCCCCACTGATCACATCACTAGGAGAGATCAGCCCAGTCCTGCCACCAGTATCCTTTGGTGCCACATCTGTTCTGGCTGGCATGGCTGTGGCTTGCTTCCTGACTGAGACCCGTAATGTGCCACTGGTAGAAACTATTGCTGCAATGGAGAGAcggtagtgacaccctattgccacaaccagtaatcaaccctgaaactagcaaa Alignment from CESAR gCAGATGGGGATGGGATTTGCTTCTGTCAATGCCCGCCTCGGAGGCTTGGTGGCACCCCTGATCACCACACTTGGCGAGATCAGTCCAGTTCTGCCACCTGTATCCTTTGGTGCCACTTCAGTCTTGGCTGGAATGGCTGTCGCCTGCTTCCTGACTGAGACCCGCAATGTGCCACTGGTAGAAACTATTGCTGCAATGGAGAGAcg gagcatttttggaccaggcccatctcctctgactgacaatgcctttccaggCAAATGGGTATGGAGTTTGCTTCTGTCAATGCT--CTTCGGAGGTTTGGTGGCCCCACTGATCACATCACTAGGAGAGATCAGCCCAGTCCTGCCACCAGTATCCTTTGGTGCCACATCTGTTCTGGCTGGCATGGCTGTGGCTTGCTTCCTGACTGAGACCCGTAATGTGCCACTGGTAGAAACTATTGCTGCAATGGAGAGAcggtagtgacaccctattgccacaaccagtaatcaaccctgaaactagcaaa Alignment from Spaln_aa2Genome GCAGATGGGGATGGGATTTGCTTCTGTCAATGCCCGCCTCGGAGGCTTGGTGGCACCCCTGATCACCACACTTGGCGAGATCAGTCCAGTTCTGCCACCTGTATCCTTTGGTGCCACTTCAGTCTTGGCTGGAATGGCTGTCGCCTGCTTCCTGACTGAGACCCGCAATGTGCCACTGGTAGAAACTATTGCTGCAATGGAGAGACG gagcatttttggaccaggcccatctcctctgactgacaatgcctttccagGCAAATGGGTATGGAGTTTGCTTCTGTCAATGCTC--TTCGGAGGTTTGGTGGCCCCACTGATCACATCACTAGGAGAGATCAGCCCAGTCCTGCCACCAGTATCCTTTGGTGCCACATCTGTTCTGGCTGGCATGGCTGTGGCTTGCTTCCTGACTGAGACCCGTAATGTGCCACTGGTAGAAACTATTGCTGCAATGGAGAGACGgtagtgacaccctattgccacaaccagtaatcaaccctgaaactagcaaa Alignment from Spaln_nt2Genome GCAGATGGGGATGGGATTTGCTTCTGTCAATGCCCGCCTCGGAGGCTTGGTGGCACCCCTGATCACCACACTTGGCGAGATCAGTCCAGTTCTGCCACCTGTATCCTTTGGTGCCACTTCAGTCTTGGCTGGAATGGCTGTCGCCTGCTTCCTGACTGAGACCCGCAATGTGCCACTGGTAGAAACTATTGCTGCAATGGAGAGACG gagcatttttggaccaggcccatctcctctgactgacaatgcctttccagGCAAATGGGTATGGAGTTTGCTTCTGTCAATG--CTCTTCGGAGGTTTGGTGGCCCCACTGATCACATCACTAGGAGAGATCAGCCCAGTCCTGCCACCAGTATCCTTTGGTGCCACATCTGTTCTGGCTGGCATGGCTGTGGCTTGCTTCCTGACTGAGACCCGTAATGTGCCACTGGTAGAAACTATTGCTGCAATGGAGAGACGgtagtgacaccctattgccacaaccagtaatcaaccctgaaactagcaaa Alignment from Pairagon GCAGATGGGGATGGGATTTGCTTCTGTCAATGCCCGCCTCGGAGGCTTGGTGGCACCCCTGATCACCACACTTGGCGAGATCAGTCCAGTTCTGCCACCTGTATCCTTTGGTGCCACTTCAGTCTTGGCTGGAATGGCTGTCGCCTGCTTCCTGACTGAGACCCGCAATGTGCCACTGGTAGAAACTATTGCTGCAATGGAGAGACG gagcatttttggaccaggcccatctcctctgactgacaatgcctttccagGCAAATGGGTATGGAGTTTGCTTCTGTCAATGCT--CTTCGGAGGTTTGGTGGCCCCACTGATCACATCACTAGGAGAGATCAGCCCAGTCCTGCCACCAGTATCCTTTGGTGCCACATCTGTTCTGGCTGGCATGGCTGTGGCTTGCTTCCTGACTGAGACCCGTAATGTGCCACTGGTAGAAACTATTGCTGCAATGGAGAGACGgtagtgacaccctattgccacaaccagtaatcaaccctgaaactagcaaa Alignment from Exonerate_protein2genome GCAGATGGGGATGGGATTTGCTTCTGTCAATGCCCGCCTC-GGAGGCTTGGTGGCACCCCTGATCACCACACTTGGCGAGATCAGTCCAGTTCTGCCACCTGTATCCTTTGGTGCCACTTCAGTCTTGGCTGGAATGGCTGTCGCCTGCTTCCTGACTGAGACCCGCAATGTGCCACTGGTAGAAACTATTGCTGCAATGGAGAGACG gagcatttttggaccaggcccatctcctctgactgacaatgcctttccagGCAAATGGGTATGGAGTTTGCTTCTGTCAATGCT---CTTCGGAGGTTTGGTGGCCCCACTGATCACATCACTAGGAGAGATCAGCCCAGTCCTGCCACCAGTATCCTTTGGTGCCACATCTGTTCTGGCTGGCATGGCTGTGGCTTGCTTCCTGACTGAGACCCGTAATGTGCCACTGGTAGAAACTATTGCTGCAATGGAGAGACGgtagtgacaccctattgccacaaccagtaatcaaccctgaaactagcaaa Alignment from Exonerate_coding2genome gagcatttttggaccaggcccatctcctctgactgacaatgcctttccaggcaaatgggtatggagtttgcttctgtcaatgctcttcggaggtttggtggccccactgatcacatcactaggagagatcagcccagtcctgccaccagtatcctttggtgccacatctgttctggctggcatggctgtggcttgcttcctgactgagacccgtaatgtgccactggtagaaactattgctgcaatggagagacggtagtgacaccctattgccacaaccagtaatcaaccctgaaactagcaaa Alignment from GeneWise GCAGATGGGGATGGGATTTGCTTCTGTCAATGCCCGCCTCGGAGGCTTGGTGGCACCCCTGATCACCACACTTGGCGAGATCAGTCCAGTTCTGCCACCTGTATCCTTTGGTGCCACTTCAGTCTTGGCTGGAATGGCTGTCGCCTGCTTCCTGACTGAGACCCGCAATGTGCCACTGGTAGAAACTATTGCTGCAATGGAGAGACGA-- gagcatttttggaccaggcccatctcctctgactgacaatgcctttccagGCAAATGGGTATGGAGTTTGCTTCTGTCAATGCTC--TTCGGAGGTTTGGTGGCCCCACTGATCACATCACTAGGAGAGATCAGCCCAGTCCTGCCACCAGTATCCTTTGGTGCCACATCTGTTCTGGCTGGCATGGCTGTGGCTTGCTTCCTGACTGAGACCCGTAATGTGCCACTGGTAGAAACTATTGCTGCAATGGAGAGACGGTAgtgacaccctattgccacaaccagtaatcaaccctgaaactagcaaa #### Slc22a20_ID1351_2 --> 0 - 2 Original Alignment TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTG-GTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACag agggtggcgacctcacaatcaaagcctacatgtgtttcttttcttaccagTGGGACCTGGTGTGCGAGACCCGCACTCTACATGACCTGGCTCAGTCTATCTATATGTCTGGAGTGTTGCGTTGGGGCTGCCTTGTTTGGTTGCCTAGCAGACaggtaggtttcttggatggcaactatttcctcactctttattgtcatttcta Alignment from CESAR TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTG-GTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACag agggtggcgacctcacaatcaaagcctacatgtgtttcttttcttaccagTGGGACCTGGTGTGCGAGACCCGCACTCTACATGACCTGGCTCAGTCTATCTATATGTCTGGAGTGTTGCGTTGGGGCTGCCTTGTTTGGTTGCCTAGCAGACaggtaggtttcttggatggcaactatttcctcactctttattgtcatttcta Alignment from Spaln_aa2Genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTG-GTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG agggtggcgacctcacaatcaaagcctacatgtgtttcttttcttaccagTGGGACCTGGTGTGCGAGACCCGCACTCTACATGACCTGGCTCAGTCTATCTATATGTCTGGAGTGTTGcGTTGGGGCTGCCTTGTTTGGTTGCCTAGCAGACAGgtaggtttcttggatggcaactatttcctcactctttattgtcatttcta Alignment from Spaln_nt2Genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTG-GTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG agggtggcgacctcacaatcaaagcctacatgtgtttcttttcttaccagTGGGACCTGGTGTGCGAGACCCGCACTCTACATGACCTGGCTCAGTCTATCTATATGTCTGGAGTGTTGCGTTGGGGCTGCCTTGTTTGGTTGCCTAGCAGACAGgtaggtttcttggatggcaactatttcctcactctttattgtcatttcta Alignment from Pairagon TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTG-GTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG agggtggcgacctcacaatcaaagcctacatgtgtttcttttcttaccagTGGGACCTGGTGTGCGAGACCCGCACTCTACATGACCTGGCTCAGTCTATCTATATGTCTGGAGTGTTGCGTTGGGGCTGCCTTGTTTGGTTGCCTAGCAGACAGgtaggtttcttggatggcaactatttcctcactctttattgtcatttcta Alignment from Exonerate_protein2genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTG-GTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG agggtggcgacctcacaatcaaagcctacatgtgtttcttttcttaccagTGGGACCTGGTGTGCGAGACCCGCACTCTACATGACCTGGCTCAGTCTATCTATATGTCTGGAGTGTTGCGTTGGGGCTGCCTTGTTTGGTTGCCTAGCAGACAGgtaggtttcttggatggcaactatttcctcactctttattgtcatttcta Alignment from Exonerate_coding2genome TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTG-GTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG agggtggcgacctcacaatcaaagcctacatgtgtttcttttcttaccagTGGGACCTGGTGTGCGAGACCCGCACTCTACATGACCTGGCTCAGTCTATCTATATGTCTGGAGTGTTGCGTTGGGGCTGCCTTGTTTGGTTGCCTAGCAGACAGgtaggtttcttggatggcaactatttcctcactctttattgtcatttcta Alignment from GeneWise TGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAGTCCATCTACATGTCCGGGGTGTTG-GTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAG agggtggcgacctcacaatcaaagcctacatgtgtttcttttcttaccagTGGGACCTGGTGTGCGAGACCCGCACTCTACATGACCTGGCTCAGTCTATCTATATGTCTGGAGTGTTGCGTTGGGGCTGCCTTGTTTGGTTGCCTAGCAGACAGgtaggtttcttggatggcaactatttcctcactctttattgtcatttcta #### Slc22a6_ID2284_5 --> 1 - 0 Original Alignment gTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGG-GCTAAGCTGAGTATAGAG gaacttaacgagagaccctatccacatcaaaactttctgtctcaaaacaggTTCTTCATTGAATCAGCCCGATGGTACTCGTCCTCTGGTAGGCTGGACCTTACCCTCCGAGCCCTGCAGAGAGTGGCTTGTATCAATGCAAAACAAGAGGAGGGGCCCTAAACTGTGTATTGAGgtaagatctatttattcctagacactgcctgaaatcttactcaggtcctc Alignment from CESAR gTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGG-GCTAAGCTGAGTATAGAG gaacttaacgagagaccctatccacatcaaaactttctgtctcaaaacaggTTCTTCATTGAATCAGCCCGATGGTACTCGTCCTCTGGTAGGCTGGACCTTACCCTCCGAGCCCTGCAGAGAGTGGCTTGTATCAATGCAAAACAAGAGGAGGGGCCCTAAACTGTGTATTGAGgtaagatctatttattcctagacactgcctgaaatcttactcaggtcctc Alignment from Spaln_aa2Genome GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGG-GCTAAGCTGAGTATAGAG gaacttaacgagagaccctatccacatcaaaactttctgtctcaaaacagGTTCTTCATTGAATCAGCCCGATGGTACTCGTCCTCTGGTAGGCTGGACCTTACCCTCCGAGCCCTGCAGAGAGTGGCTTGTATCAATGCAAAACAAGAGGAGGGGcCCTAAACTGTGTATTGAGgtaagatctatttattcctagacactgcctgaaatcttactcaggtcctc Alignment from Spaln_nt2Genome GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGGGC-TAAGCTGAGTATAGAG gaacttaacgagagaccctatccacatcaaaactttctgtctcaaaacagGTTCTTCATTGAATCAGCCCGATGGTACTCGTCCTCTGGTAGGCTGGACCTTACCCTCCGAGCCCTGCAGAGAGTGGCTTGTATCAATGCAAAACAAGAGGAGGGGCCCTAAACTGTGTATTGAGgtaagatctatttattcctagacactgcctgaaatcttactcaggtcctc Alignment from Pairagon GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGG-GCTAAGCTGAGTATAGAG gaacttaacgagagaccctatccacatcaaaactttctgtctcaaaacagGTTCTTCATTGAATCAGCCCGATGGTACTCGTCCTCTGGTAGGCTGGACCTTACCCTCCGAGCCCTGCAGAGAGTGGCTTGTATCAATGCAAAACAAGAGGAGGGGCCCTAAACTGTGTATTGAGgtaagatctatttattcctagacactgcctgaaatcttactcaggtcctc Alignment from Exonerate_protein2genome GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAG-GGGGCTAAGCTGAGTATAGAG gaacttaacgagagaccctatccacatcaaaactttctgtctcaaaacagGTTCTTCATTGAATCAGCCCGATGGTACTCGTCCTCTGGTAGGCTGGACCTTACCCTCCGAGCCCTGCAGAGAGTGGCTTGTATCAATGCAAAACAAGAGGAGGGGCCCTAAACTGTGTATTGAGgtaagatctatttattcctagacactgcctgaaatcttactcaggtcctc Alignment from Exonerate_coding2genome GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAG-GGGGCTAAGCTGAGTATAGAG gaacttaacgagagaccctatccacatcaaaactttctgtctcaaaacagGTTCTTCATTGAATCAGCCCGATGGTACTCGTCCTCTGGTAGGCTGGACCTTACCCTCCGAGCCCTGCAGAGAGTGGCTTGTATCAATGCAAAACAAGAGGAGGGGCCCTAAACTGTGTATTGAGgtaagatctatttattcctagacactgcctgaaatcttactcaggtcctc Alignment from GeneWise GTTCTTCATTGAGTCAGCCCGCTGGTACTCCTCCTCTGGAAGGCTGGACCTCACCCTCCGAGCCCTGCAGAGAGTGGCCCGCATCAACGGGAAACAAGAAGAGGGG-GCTAAGCTGAGTATAGAG gaacttaacgagagaccctatccacatcaaaactttctgtctcaaaacagGTTCTTCATTGAATCAGCCCGATGGTACTCGTCCTCTGGTAGGCTGGACCTTACCCTCCGAGCCCTGCAGAGAGTGGCTTGTATCAATGCAAAACAAGAGGAGGGGCCCTAAACTGTGTATTGAGgtaagatctatttattcctagacactgcctgaaatcttactcaggtcctc #### Slc22a8_ID2275_8 --> 2 - 2 Original Alignment aaATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCT-GGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCag tgtctcctagcaaatttacatgcagaggggtctcttctgtttccactcagaaATGGAGATAGTGAGGACAGCACTGGCTGTATTTGGTATGGGATGCTTATCCCGGCTCCTTCAGCTGCCTCTTCTTCTACACCAGTGAGCTCTACCCCACAGTCCTCaggtaagaggtgcacttgggtcaggagtccatctgaagagctgaattctcaa Alignment from CESAR aaATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCT-GGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCag tgtctcctagcaaatttacatgcagaggggtctcttctgtttccactcagaaATGGAGATAGTGAGGACAGCACTGGCTGTATTTGGTATGGGATGCTTATCCCGGCTCCTTCAGCTGCCTCTTCTTCTACACCAGTGAGCTCTACCCCACAGTCCTCaggtaagaggtgcacttgggtcaggagtccatctgaagagctgaattctcaa Alignment from Spaln_aa2Genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCT-GGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tgtctcctagcaaatttacatgcagaggggtctcttctgtttccactcagAAATGGAGATAGTGAGGACAGCACTGGCTGTATTTGGTATGGGATGCTTATCCcGGCTCCTTCAGCTGCCTCTTCTTCTACACCAGTGAGCTCTACCCCACAGTCCTCAGgtaagaggtgcacttgggtcaggagtccatctgaagagctgaattctcaa Alignment from Spaln_nt2Genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCT-GGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tgtctcctagcaaatttacatgcagaggggtctcttctgtttccactcagAAATGGAGATAGTGAGGACAGCACTGGCTGTATTTGGTATGGGATGCTTATCCCGGCTCCTTCAGCTGCCTCTTCTTCTACACCAGTGAGCTCTACCCCACAGTCCTCAGgtaagaggtgcacttgggtcaggagtccatctgaagagctgaattctcaa Alignment from Pairagon AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGT-CTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tgtctcctagcaaatttacatgcagaggggtctcttctgtttccactcagAAATGGAGATAGTGAGGACAGCACTGGCTGTATTTGGTATGGGATGCTTATCCCGGCTCCTTCAGCTGCCTCTTCTTCTACACCAGTGAGCTCTACCCCACAGTCCTCAGgtaagaggtgcacttgggtcaggagtccatctgaagagctgaattctcaa Alignment from Exonerate_protein2genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCT-GGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tgtctcctagcaaatttacatgcagaggggtctcttctgtttccactcagAAATGGAGATAGTGAGGACAGCACTGGCTGTATTTGGTATGGGATGCTTATCCCGGCTCCTTCAGCTGCCTCTTCTTCTACACCAGTGAGCTCTACCCCACAGTCCTCAGgtaagaggtgcacttgggtcaggagtccatctgaagagctgaattctcaa Alignment from Exonerate_coding2genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTGTCT-GGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tgtctcctagcaaatttacatgcagaggggtctcttctgtttccactcagAAATGGAGATAGTGAGGACAGCACTGGCTGTATTTGGTATGGGATGCTTATCCCGGCTCCTTCAGCTGCCTCTTCTTCTACACCAGTGAGCTCTACCCCACAGTCCTCAGgtaagaggtgcacttgggtcaggagtccatctgaagagctgaattctcaa Alignment from GeneWise AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAAGGGATGCCTG-TCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tgtctcctagcaaatttacatgcagaggggtctcttctgtttccactcagAAATGGAGATAGTGAGGACAGCACTGGCTGTATTTGGTATGGGATGCTTATCCCGGCTCCTTCAGCTGCCTCTTCTTCTACACCAGTGAGCTCTACCCCACAGTCCTCAGgtaagaggtgcacttgggtcaggagtccatctgaagagctgaattctcaa #### Slc25a45_ID1291_2 --> 2 - 0 Original Alignment gaGCTGTGGGCCTGGTCCTGGGG-CACCCATTCGACACTGTAAAG atggacgtgttacttggacatggcattttaactgatgccttctgttctaggaGCTGTGGGCCTGGTCCTGGGGCCACCCATTTGACACTGTAAAGgtaaaaaataaacatgccgggatgagagccagttttgcaaaatttgggtg Alignment from CESAR gaGCTGTGGGCCTGGTCCTGGGG-CACCCATTCGACACTGTAAAG atggacgtgttacttggacatggcattttaactgatgccttctgttctaggaGCTGTGGGCCTGGTCCTGGGGCCACCCATTTGACACTGTAAAGgtaaaaaataaacatgccgggatgagagccagttttgcaaaatttgggtg Alignment from Spaln_aa2Genome GAGCTGTGGGCCTGGTCCTGGGGCACCCA-TTCGACACTGTAAAG atggacgtgttacttggacatggcattttaactgatgccttctgttctagGAGCTGTGGGCCTGGTCCTGGGGCCACCCaTTTGACACTGTAAAGgtaaaaaataaacatgccgggatgagagccagttttgcaaaatttgggtg Alignment from Spaln_nt2Genome GAGCTGTGGGCCTGGTCCTGGGG-CACCCATTCGACACTGTAAAG atggacgtgttacttggacatggcattttaactgatgccttctgttctagGAGCTGTGGGCCTGGTCCTGGGGCCACCCATTTGACACTGTAAAGgtaaaaaataaacatgccgggatgagagccagttttgcaaaatttgggtg Alignment from Pairagon GAGCTGTGGGCCTGGTCCTGGGG-CACCCATTCGACACTGTAAAG atggacgtgttacttggacatggcattttaactgatgccttctgttctagGAGCTGTGGGCCTGGTCCTGGGGCCACCCATTTGACACTGTAAAGgtaaaaaataaacatgccgggatgagagccagttttgcaaaatttgggtg Alignment from Exonerate_protein2genome GAGCTGTGGGCCTGGTCCTG-GGGCACCCATTCGACACTGTAAAG atggacgtgttacttggacatggcattttaactgatgccttctgttctagGAGCTGTGGGCCTGGTCCTGGGGCCACCCATTTGACACTGTAAAGgtaaaaaataaacatgccgggatgagagccagttttgcaaaatttgggtg Alignment from Exonerate_coding2genome GAGCTGTGGGCCTGGTCCTG-GGGCACCCATTCGACACTGTAAAGGTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGT atggacgtgttacttggacatggcattttaactgatgccttctgttctagGAGCTGTGGGCCTGGTCCTGGGGCCACCCATTTGACACTGTAAAGGTAAAAAATAAACATGCCGGGATGAGAGCCAGTTTTGCAAAATTTGGgtg Alignment from GeneWise atggacgtgttacttggacatggcattttaactgatgccttctgttctaggagctgtgggcctggtcctggggccacccatttgacactgtaaaggtaaaaaataaacatgccgggatgagagccagttttgcaaaatttgggtg #### Slc25a45_ID1292_3 --> 0 - 0 Original Alignment GTGCGGTTACAGACCCAAAGCACG-TACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA attgttattgttggagcaccactggcactggtggtggggggttgttgcagGTACGGTTACAAACCCAAAGTACACTATCGGGGCATTGTTGACTGTGTTGCTAAGACATATCGTCATGAGTCAgtagtggccccccttgttagggtgatagagagactcatctgagcaggtgg Alignment from CESAR GTGCGGTTACAGACCCAAAGCACG-TACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA attgttattgttggagcaccactggcactggtggtggggggttgttgcagGTACGGTTACAAACCCAAAGTACACTATCGGGGCATTGTTGACTGTGTTGCTAAGACATATCGTCATGAGTCAgtagtggccccccttgttagggtgatagagagactcatctgagcaggtgg Alignment from Spaln_aa2Genome GTGCGGTTACAGACCCAAAGCACG-TACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA attgttattgttggagcaccactggcactggtggtggggggttgttgcagGTACGGTTACAAACCCAAAGTACAcTATCGGGGCATTGTTGACTGTGTTGCTAAGACATATCGTCATGAGTCAgtagtggccccccttgttagggtgatagagagactcatctgagcaggtgg Alignment from Spaln_nt2Genome GTGCGGTTACAGACCCAAAGCACG-TACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA attgttattgttggagcaccactggcactggtggtggggggttgttgcagGTACGGTTACAAACCCAAAGTACACTATCGGGGCATTGTTGACTGTGTTGCTAAGACATATCGTCATGAGTCAgtagtggccccccttgttagggtgatagagagactcatctgagcaggtgg Alignment from Pairagon GTGCGGTTACAGACCCAAAGCACG-TACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA attgttattgttggagcaccactggcactggtggtggggggttgttgcagGTACGGTTACAAACCCAAAGTACACTATCGGGGCATTGTTGACTGTGTTGCTAAGACATATCGTCATGAGTCAgtagtggccccccttgttagggtgatagagagactcatctgagcaggtgg Alignment from Exonerate_protein2genome GTGCGGTTACAGACCCAAAGCACG-TACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCA attgttattgttggagcaccactggcactggtggtggggggttgttgcagGTACGGTTACAAACCCAAAGTACACTATCGGGGCATTGTTGACTGTGTTGCTAAGACATATCGTCATGAGTCAgtagtggccccccttgttagggtgatagagagactcatctgagcaggtgg Alignment from Exonerate_coding2genome attgttattgttggagcaccactggcactggtggtggggggttgttgcaggtacggttacaaacccaaagtacactatcggggcattgttgactgtgttgctaagacatatcgtcatgagtcagtagtggccccccttgttagggtgatagagagactcatctgagcaggtgg Alignment from GeneWise GTGCGGTTACAGACCCAAAGC-ACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCAGTC attgttattgttggagcaccactggcactggtggtggggggttgttgcagGTACGGTTACAAACCCAAAGTACACTATCGGGGCATTGTTGACTGTGTTGCTAAGACATATCGTCATGAGTCAGTAgtggccccccttgttagggtgatagagagactcatctgagcaggtgg #### Slc25a45_ID1293_4 --> 0 - 0 Original Alignment GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAG-GAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG aagcttcactaatgtttttggacacaaatactgtatttttgtaatcctagGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCCCTGGTTAACTCTGTCTTGTTTGGAGTGTACAGCAACACACTCCTGGCGCTAACAGCCACATCTCATCAGCGAGCGCCAGGTCCAGCCCCCAAGCCACACAAATATCTTTATAGCAGGTTGTACCGGGGGCCTCCGTCAGgtagatgtatcattgttgcgggataattgatatacttttagttcatcgaa Alignment from CESAR GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAG-GAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG aagcttcactaatgtttttggacacaaatactgtatttttgtaatcctagGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCCCTGGTTAACTCTGTCTTGTTTGGAGTGTACAGCAACACACTCCTGGCGCTAACAGCCACATCTCATCAGCGAGCGCCAGGTCCAGCCCCCAAGCCACACAAATATCTTTATAGCAGGTTGTACCGGGGGCCTCCGTCAGgtagatgtatcattgttgcgggataattgatatacttttagttcatcgaa Alignment from Spaln_aa2Genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAG-GAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG aagcttcactaatgtttttggacacaaatactgtatttttgtaatcctagGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCCCTGGTTAACTCTGTCTTGTTTGGAGTGTACAGCAACACACTCCTGGCGCTAACAGCCACATCTCATCAGcGAGCGCCAGGTCCAGCCCCCAAGCCACACAAATATCTTTATAGCAGGTTGTACCGGGGGCCTCCGTCAGgtagatgtatcattgttgcgggataattgatatacttttagttcatcgaa Alignment from Spaln_nt2Genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAG-GAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG aagcttcactaatgtttttggacacaaatactgtatttttgtaatcctagGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCCCTGGTTAACTCTGTCTTGTTTGGAGTGTACAGCAACACACTCCTGGCGCTAACAGCCACATCTCATCAGCGAGCGCCAGGTCCAGCCCCCAAGCCACACAAATATCTTTATAGCAGGTTGTACCGGGGGCCTCCGTCAGgtagatgtatcattgttgcgggataattgatatacttttagttcatcgaa Alignment from Pairagon GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAG-GAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG aagcttcactaatgtttttggacacaaatactgtatttttgtaatcctagGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCCCTGGTTAACTCTGTCTTGTTTGGAGTGTACAGCAACACACTCCTGGCGCTAACAGCCACATCTCATCAGCGAGCGCCAGGTCCAGCCCCCAAGCCACACAAATATCTTTATAGCAGGTTGTACCGGGGGCCTCCGTCAGgtagatgtatcattgttgcgggataattgatatacttttagttcatcgaa Alignment from Exonerate_protein2genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAG-GAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG aagcttcactaatgtttttggacacaaatactgtatttttgtaatcctagGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCCCTGGTTAACTCTGTCTTGTTTGGAGTGTACAGCAACACACTCCTGGCGCTAACAGCCACATCTCATCAGCGAGCGCCAGGTCCAGCCCCCAAGCCACACAAATATCTTTATAGCAGGTTGTACCGGGGGCCTCCGTCAGgtagatgtatcattgttgcgggataattgatatacttttagttcatcgaa Alignment from Exonerate_coding2genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAG-GAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG aagcttcactaatgtttttggacacaaatactgtatttttgtaatcctagGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCCCTGGTTAACTCTGTCTTGTTTGGAGTGTACAGCAACACACTCCTGGCGCTAACAGCCACATCTCATCAGCGAGCGCCAGGTCCAGCCCCCAAGCCACACAAATATCTTTATAGCAGGTTGTACCGGGGGCCTCCGTCAGgtagatgtatcattgttgcgggataattgatatacttttagttcatcgaa Alignment from GeneWise GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAG-GAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG aagcttcactaatgtttttggacacaaatactgtatttttgtaatcctagGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCCCTGGTTAACTCTGTCTTGTTTGGAGTGTACAGCAACACACTCCTGGCGCTAACAGCCACATCTCATCAGCGAGCGCCAGGTCCAGCCCCCAAGCCACACAAATATCTTTATAGCAGGTTGTACCGGGGGCCTCCGTCAGgtagatgtatcattgttgcgggataattgatatacttttagttcatcgaa #### Slc29a2_ID788_2 --> 1 - 0 Original Alignment cTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTT-CTCCCCTGGAACTTCTTCATTACCGCCATCCCG ggaggtgtaggcaaattcctctaaggtatctgaacactcttttcctgtagcTACCACTTGGCTGGCATCAGCTTTTTCATCCTGGGACTAGGCACCCTTCCTCCCCTGGAATTTCTTCATTACTGCAATCCCGgtgcttcctggagtcactgcgcattataaatgctgtaaaccaatctccct Alignment from CESAR cTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTT-CTCCCCTGGAACTTCTTCATTACCGCCATCCCG ggaggtgtaggcaaattcctctaaggtatctgaacactcttttcctgtagcTACCACTTGGCTGGCATCAGCTTTTTCATCCTGGGACTAGGCACCCTTCCTCCCCTGGAATTTCTTCATTACTGCAATCCCGgtgcttcctggagtcactgcgcattataaatgctgtaaaccaatctccct Alignment from Spaln_aa2Genome CTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTT-CTCCCCTGGAACTTCTTCATTACCGCCATCCCG ggaggtgtaggcaaattcctctaaggtatctgaacactcttttcctgtagCTACCACTTGGCTGGCATCAGCTTTTTCATCCTGGGACTAGGCACCCTTcCTCCCCTGGAATTTCTTCATTACTGCAATCCCGgtgcttcctggagtcactgcgcattataaatgctgtaaaccaatctccct Alignment from Spaln_nt2Genome CTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTT-CTCCCCTGGAACTTCTTCATTACCGCCATCCCG ggaggtgtaggcaaattcctctaaggtatctgaacactcttttcctgtagCTACCACTTGGCTGGCATCAGCTTTTTCATCCTGGGACTAGGCACCCTTCCTCCCCTGGAATTTCTTCATTACTGCAATCCCGgtgcttcctggagtcactgcgcattataaatgctgtaaaccaatctccct Alignment from Pairagon CTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTT-CTCCCCTGGAACTTCTTCATTACCGCCATCCCG ggaggtgtaggcaaattcctctaaggtatctgaacactcttttcctgtagCTACCACTTGGCTGGCATCAGCTTTTTCATCCTGGGACTAGGCACCCTTCCTCCCCTGGAATTTCTTCATTACTGCAATCCCGgtgcttcctggagtcactgcgcattataaatgctgtaaaccaatctccct Alignment from Exonerate_protein2genome CTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTT-CTCCCCTGGAACTTCTTCATTACCGCCATCCCG ggaggtgtaggcaaattcctctaaggtatctgaacactcttttcctgtagCTACCACTTGGCTGGCATCAGCTTTTTCATCCTGGGACTAGGCACCCTTCCTCCCCTGGAATTTCTTCATTACTGCAATCCCGgtgcttcctggagtcactgcgcattataaatgctgtaaaccaatctccct Alignment from Exonerate_coding2genome ggaggtgtaggcaaattcctctaaggtatctgaacactcttttcctgtagctaccacttggctggcatcagctttttcatcctgggactaggcacccttcctcccctggaatttcttcattactgcaatcccggtgcttcctggagtcactgcgcattataaatgctgtaaaccaatctccct Alignment from GeneWise AGCTACCACCTGGTTGGGATCAGCTTCTTCATTCTGGGACTGGGCACCCTT-CTCCCCTGGAACTTCTTCATTACCGCCATCCCG ggaggtgtaggcaaattcctctaaggtatctgaacactcttttcctgtAGCTACCACTTGGCTGGCATCAGCTTTTTCATCCTGGGACTAGGCACCCTTCCTCCCCTGGAATTTCTTCATTACTGCAATCCCGgtgcttcctggagtcactgcgcattataaatgctgtaaaccaatctccct #### Slc29a2_ID789_3 --> 0 - 2 Original Alignment TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTG-CCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGtg ggattattttctgacaagctgcaactgtttgtggcttatttcatactcagTACCTCCGGGGACGGTTGGCAGGTACTAACAGCAGTGCTGAGACCATGGGCACAAACCACACCAGCCCCACCGATGCATCCAATTTCAACAATTGGGTGACACTGCTATCCCAGTTGCCCTCTACTGCTGTTCACACTGCTCAACTCCTTCCTGTATCAGtggtacgcaccacacataaccaatcccttgacaatcattgtcaggcacctca Alignment from CESAR TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTG-CCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGtg ggattattttctgacaagctgcaactgtttgtggcttatttcatactcagTACCTCCGGGGACGGTTGGCAGGTACTAACAGCAGTGCTGAGACCATGGGCACAAACCACACCAGCCCCACCGATGCATCCAATTTCAACAATTGGGTGACACTGCTATCCCAGTTGCCCTCTACTGCTGTTCACACTGCTCAACTCCTTCCTGTATCAGtggtacgcaccacacataaccaatcccttgacaatcattgtcaggcacctca Alignment from Spaln_aa2Genome TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCT-CTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGTG ggattattttctgacaagctgcaactgtttgtggcttatttcatactcagTACCTCCGGGGACGGTTGGCAGGTACTAACAGCAGTGCTGAGACCATGGGCACAAACCACACCAGCCCCACCGATGCATCCAATTTCAACAATTGGGTGACACTGCTATCCCAGTTGCCCtCTACTGCTGTTCACACTGCTCAACTCCTTCCTGTATCAGTGgtacgcaccacacataaccaatcccttgacaatcattgtcaggcacctca Alignment from Spaln_nt2Genome TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCC-TCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGTG ggattattttctgacaagctgcaactgtttgtggcttatttcatactcagTACCTCCGGGGACGGTTGGCAGGTACTAACAGCAGTGCTGAGACCATGGGCACAAACCACACCAGCCCCACCGATGCATCCAATTTCAACAATTGGGTGACACTGCTATCCCAGTTGCCCTCTACTGCTGTTCACACTGCTCAACTCCTTCCTGTATCAGTGgtacgcaccacacataaccaatcccttgacaatcattgtcaggcacctca Alignment from Pairagon TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTG-CCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGTG ggattattttctgacaagctgcaactgtttgtggcttatttcatactcagTACCTCCGGGGACGGTTGGCAGGTACTAACAGCAGTGCTGAGACCATGGGCACAAACCACACCAGCCCCACCGATGCATCCAATTTCAACAATTGGGTGACACTGCTATCCCAGTTGCCCTCTACTGCTGTTCACACTGCTCAACTCCTTCCTGTATCAGTGgtacgcaccacacataaccaatcccttgacaatcattgtcaggcacctca Alignment from Exonerate_protein2genome TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTG-CCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGTG ggattattttctgacaagctgcaactgtttgtggcttatttcatactcagTACCTCCGGGGACGGTTGGCAGGTACTAACAGCAGTGCTGAGACCATGGGCACAAACCACACCAGCCCCACCGATGCATCCAATTTCAACAATTGGGTGACACTGCTATCCCAGTTGCCCTCTACTGCTGTTCACACTGCTCAACTCCTTCCTGTATCAGTGgtacgcaccacacataaccaatcccttgacaatcattgtcaggcacctca Alignment from Exonerate_coding2genome TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTG-CCTCTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGTG ggattattttctgacaagctgcaactgtttgtggcttatttcatactcagTACCTCCGGGGACGGTTGGCAGGTACTAACAGCAGTGCTGAGACCATGGGCACAAACCACACCAGCCCCACCGATGCATCCAATTTCAACAATTGGGTGACACTGCTATCCCAGTTGCCCTCTACTGCTGTTCACACTGCTCAACTCCTTCCTGTATCAGTGgtacgcaccacacataaccaatcccttgacaatcattgtcaggcacctca Alignment from GeneWise TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCT-CTACTGCTCTTCACGCTCCTCAACTCCTTCCTGTATCAGTG ggattattttctgacaagctgcaactgtttgtggcttatttcatactcagTACCTCCGGGGACGGTTGGCAGGTACTAACAGCAGTGCTGAGACCATGGGCACAAACCACACCAGCCCCACCGATGCATCCAATTTCAACAATTGGGTGACACTGCTATCCCAGTTGCCCTCTACTGCTGTTCACACTGCTCAACTCCTTCCTGTATCAGTGgtacgcaccacacataaccaatcccttgacaatcattgtcaggcacctca #### Slc29a2_ID793_7 --> 0 - 1 Original Alignment AAGTTTGCCCGTTACTACCTGACCGAGAAGCTGTCTCAGGCTCCAACTCAGGAG-CTGGAGACTAAAGCTGAGCTCCTCCAAGCTg agaggtgtcagcatccatgtgaggccttccgcctgtgggtaccttttcagAAGTTTTCCCGTTACTACCTAACCAAGAAGCTATCTCAAGCTCCAACTCAGGAGCCTTGAAAATAAAGCTGAACTCCTCCAAGCAggtatgaatcaagatcctctaggtatgttggaggtttaaccctcttttaga Alignment from CESAR AAGTTTGCCCGTTACTACCTGACCGAGAAGCTGTCTCAGGCTCCAACTCAGGAG-CTGGAGACTAAAGCTGAGCTCCTCCAAGCTg agaggtgtcagcatccatgtgaggccttccgcctgtgggtaccttttcagAAGTTTTCCCGTTACTACCTAACCAAGAAGCTATCTCAAGCTCCAACTCAGGAGCCTTGAAAATAAAGCTGAACTCCTCCAAGCAggtatgaatcaagatcctctaggtatgttggaggtttaaccctcttttaga Alignment from Spaln_aa2Genome AAGTTTGCCCGTTACTACCTGACCGAGAAGCTGTCTCAGGCTCCAACTCAGGAG-CTGGAGACTAAAGCTGAGCTCCTCCAAGCTG agaggtgtcagcatccatgtgaggccttccgcctgtgggtaccttttcagAAGTTTTCCCGTTACTACCTAACCAAGAAGCTATCTCAAGCTCCAACTCAGGAGcCTTGAAAATAAAGCTGAACTCCTCCAAGCAGgtatgaatcaagatcctctaggtatgttggaggtttaaccctcttttaga Alignment from Spaln_nt2Genome AAGTTTGCCCGTTACTACCTGACCGAGAAGCTGTCTCAGGCTCCAACTCAGGAGC-TGGAGACTAAAGCTGAGCTCCTCCAAGCTG agaggtgtcagcatccatgtgaggccttccgcctgtgggtaccttttcagAAGTTTTCCCGTTACTACCTAACCAAGAAGCTATCTCAAGCTCCAACTCAGGAGCCTTGAAAATAAAGCTGAACTCCTCCAAGCAGgtatgaatcaagatcctctaggtatgttggaggtttaaccctcttttaga Alignment from Pairagon AAGTTTGCCCGTTACTACCTGACCGAGAAGCTGTCTCAGGCTCCAACTCAGGAG-CTGGAGACTAAAGCTGAGCTCCTCCAAGCTG agaggtgtcagcatccatgtgaggccttccgcctgtgggtaccttttcagAAGTTTTCCCGTTACTACCTAACCAAGAAGCTATCTCAAGCTCCAACTCAGGAGCCTTGAAAATAAAGCTGAACTCCTCCAAGCAGgtatgaatcaagatcctctaggtatgttggaggtttaaccctcttttaga Alignment from Exonerate_protein2genome AAGTTTGCCCGTTACTACCTGACCGAGAAGCTGTCTCAGGCTCCAACTCAGGAG-CTGGAGACTAAAGCTGAGCTCCTCCAAGCTG agaggtgtcagcatccatgtgaggccttccgcctgtgggtaccttttcagAAGTTTTCCCGTTACTACCTAACCAAGAAGCTATCTCAAGCTCCAACTCAGGAGCCTTGAAAATAAAGCTGAACTCCTCCAAGCAGgtatgaatcaagatcctctaggtatgttggaggtttaaccctcttttaga Alignment from Exonerate_coding2genome AAGTTTGCCCGTTACTACCTGACCGAGAAGCTGTCTCAGGCTCCAACTCAGGAG-CTGGAGACTAAAGCTGAGCTCCTCCAAGCTG agaggtgtcagcatccatgtgaggccttccgcctgtgggtaccttttcagAAGTTTTCCCGTTACTACCTAACCAAGAAGCTATCTCAAGCTCCAACTCAGGAGCCTTGAAAATAAAGCTGAACTCCTCCAAGCAGgtatgaatcaagatcctctaggtatgttggaggtttaaccctcttttaga Alignment from GeneWise AAGTTTGCCCGTTACTACCTGACCGAGAAGCTGTCTCAGGCTCCAACTCAGGAG-CTGGAGACTAAAGCTGAGCTCCTCCAAGCTG agaggtgtcagcatccatgtgaggccttccgcctgtgggtaccttttcagAAGTTTTCCCGTTACTACCTAACCAAGAAGCTATCTCAAGCTCCAACTCAGGAGCCTTGAAAATAAAGCTGAACTCCTCCAAGCAGgtatgaatcaagatcctctaggtatgttggaggtttaaccctcttttaga #### Slc29a2_ID794_8 --> 2 - 0 Original Alignment atGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAG-CCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG ccttatgaatctccttgatgccatatgtcaaaattctcttcctcgtccagatGCGAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCTAGTCCAACTCTTGAGCTTGACCCAGAGAGGGAGCCAGAGCCAGAGCAGCCCACAGAAACCAGGAAAACCCTCGGTCTTTGTTGTTTTCCGGAAAgtaagttaccgtgtacagctgggggtgggggcagagggttgcctggtgca Alignment from CESAR atGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAG-CCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG ccttatgaatctccttgatgccatatgtcaaaattctcttcctcgtccagatGCGAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCTAGTCCAACTCTTGAGCTTGACCCAGAGAGGGAGCCAGAGCCAGAGCAGCCCACAGAAACCAGGAAAACCCTCGGTCTTTGTTGTTTTCCGGAAAgtaagttaccgtgtacagctgggggtgggggcagagggttgcctggtgca Alignment from Spaln_aa2Genome ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAG-CCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG ccttatgaatctccttgatgccatatgtcaaaattctcttcctcgtccagATGCGAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCTAGTCCAACTCTTGAGCTTGACCCAGAGAGGGAGCCAGAGCCAGAGCAGcCCACAGAAACCAGGAAAACCCTCGGTCTTTGTTGTTTTCCGGAAAgtaagttaccgtgtacagctgggggtgggggcagagggttgcctggtgca Alignment from Spaln_nt2Genome ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAGCC-ACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG ccttatgaatctccttgatgccatatgtcaaaattctcttcctcgtccagATGCGAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCTAGTCCAACTCTTGAGCTTGACCCAGAGAGGGAGCCAGAGCCAGAGCAGCCCACAGAAACCAGGAAAACCCTCGGTCTTTGTTGTTTTCCGGAAAgtaagttaccgtgtacagctgggggtgggggcagagggttgcctggtgca Alignment from Pairagon ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAG-CCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG ccttatgaatctccttgatgccatatgtcaaaattctcttcctcgtccagATGCGAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCTAGTCCAACTCTTGAGCTTGACCCAGAGAGGGAGCCAGAGCCAGAGCAGCCCACAGAAACCAGGAAAACCCTCGGTCTTTGTTGTTTTCCGGAAAgtaagttaccgtgtacagctgggggtgggggcagagggttgcctggtgca Alignment from Exonerate_protein2genome ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAG-CCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG ccttatgaatctccttgatgccatatgtcaaaattctcttcctcgtccagATGCGAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCTAGTCCAACTCTTGAGCTTGACCCAGAGAGGGAGCCAGAGCCAGAGCAGCCCACAGAAACCAGGAAAACCCTCGGTCTTTGTTGTTTTCCGGAAAgtaagttaccgtgtacagctgggggtgggggcagagggttgcctggtgca Alignment from Exonerate_coding2genome ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAGGAG-CCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG ccttatgaatctccttgatgccatatgtcaaaattctcttcctcgtccagATGCGAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCTAGTCCAACTCTTGAGCTTGACCCAGAGAGGGAGCCAGAGCCAGAGCAGCCCACAGAAACCAGGAAAACCCTCGGTCTTTGTTGTTTTCCGGAAAgtaagttaccgtgtacagctgggggtgggggcagagggttgcctggtgca Alignment from GeneWise ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCTGAGAAGGAGCCAGAGCCGGAG-GAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG ccttatgaatctccttgatgccatatgtcaaaattctcttcctcgtccagATGCGAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCTAGTCCAACTCTTGAGCTTGACCCAGAGAGGGAGCCAGAGCCAGAGCAGCCCACAGAAACCAGGAAAACCCTCGGTCTTTGTTGTTTTCCGGAAAgtaagttaccgtgtacagctgggggtgggggcagagggttgcctggtgca #### Slc29a2_ID795_9 --> 0 - 1 Original Alignment ATCTGGCTGACGGCGCTG-TGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGg tgcaatggagacttccctgactacccagcggttcttttcttccgtcacagATCTGGCTGACAGCACTGCTGCCTTGTGTTAGTCTTCACAGTAACCCTATCTGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGggtcagtgctggcgatagtgcacagcatggaacaggggagccagctcctgc Alignment from CESAR ATCTGGCTGACGGCGCTG-TGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGg tgcaatggagacttccctgactacccagcggttcttttcttccgtcacagATCTGGCTGACAGCACTGCTGCCTTGTGTTAGTCTTCACAGTAACCCTATCTGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGggtcagtgctggcgatagtgcacagcatggaacaggggagccagcacccca Alignment from Spaln_aa2Genome ATCTGGCTGACGGCGCTG-TGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaatggagacttccctgactacccagcggttcttttcttccgtcacagATCTGGCTGACAGCACTGcTGCCTTGTGTTAGTCTTCACAGTAACCCTATCTGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtcagtgctggcgatagtgcacagcatggaacaggggagccagctcctgc Alignment from Spaln_nt2Genome ATCTGGCTGACGGCGCTG-TGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaatggagacttccctgactacccagcggttcttttcttccgtcacagATCTGGCTGACAGCACTGCTGCCTTGTGTTAGTCTTCACAGTAACCCTATCTGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtcagtgctggcgatagtgcacagcatggaacaggggagccagctcctgc Alignment from Pairagon ATCTGGCTGACGGCGCTG-TGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaatggagacttccctgactacccagcggttcttttcttccgtcacagATCTGGCTGACAGCACTGCTGCCTTGTGTTAGTCTTCACAGTAACCCTATCTGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtcagtgctggcgatagtgcacagcatggaacaggggagccagctcctgc Alignment from Exonerate_protein2genome ATCTGGCTGACGGCGCTG-TGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaatggagacttccctgactacccagcggttcttttcttccgtcacagATCTGGCTGACAGCACTGCTGCCTTGTGTTAGTCTTCACAGTAACCCTATCTGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtcagtgctggcgatagtgcacagcatggaacaggggagccagctcctgc Alignment from Exonerate_coding2genome ATCTGGCTGACGGCGCTG-TGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaatggagacttccctgactacccagcggttcttttcttccgtcacagATCTGGCTGACAGCACTGCTGCCTTGTGTTAGTCTTCACAGTAACCCTATCTGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtcagtgctggcgatagtgcacagcatggaacaggggagccagctcctgc Alignment from GeneWise GCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACAGCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaatggagacttccctgactacccagcggttcttttcttccgtcacagatctggctgacagCACTGCTGCCTTGTGTTAGTCTTCACAGTAACCCTATCTGTTTTTCCTGCTATCACAGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtcagtgctggcgatagtgcacagcatggaacaggggagccagctcctgc #### Slc29a2_ID796_10 --> 2 - 0 Original Alignment gtCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGAT-TGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agtgcacagcatggaacaggggagccagcaccccatgcttccttctgcaggtCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATCTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtgagtgtctgggccaaaccactgagcagcattacctagaagactagata Alignment from CESAR gtCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGAT-TGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agtgcacagcatggaacaggggagccagcaccccatgcttccttctgcaggtCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATCTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtgagtgtctgggccaaaccactgagcagcattacctagaagactagata Alignment from Spaln_aa2Genome GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGAT-TGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agtgcacagcatggaacaggggagccagcaccccatgcttccttctgcagGTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATcTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtgagtgtctgggccaaaccactgagcagcattacctagaagactagata Alignment from Spaln_nt2Genome GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGAT-TGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agtgcacagcatggaacaggggagccagcaccccatgcttccttctgcagGTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATCTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtgagtgtctgggccaaaccactgagcagcattacctagaagactagata Alignment from Pairagon GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGAT-TGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agtgcacagcatggaacaggggagccagcaccccatgcttccttctgcagGTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATCTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtgagtgtctgggccaaaccactgagcagcattacctagaagactagata Alignment from Exonerate_protein2genome GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGAT-TGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agtgcacagcatggaacaggggagccagcaccccatgcttccttctgcagGTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATCTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtgagtgtctgggccaaaccactgagcagcattacctagaagactagata Alignment from Exonerate_coding2genome GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGAT-TGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agtgcacagcatggaacaggggagccagcaccccatgcttccttctgcagGTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATCTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtgagtgtctgggccaaaccactgagcagcattacctagaagactagata Alignment from GeneWise GTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATG-GATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agtgcacagcatggaacaggggagccagcaccccatgcttccttctgcagGTCTGTTCTTCAACCCTATCTGTTGCTTTCTGCTCTTCAACGTCATGGATCTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtgagtgtctgggccaaaccactgagcagcattacctagaagactagata #### Slc3a2_ID2301_8 --> 0 - 0 Original Alignment GTGTCGCAAGCAGGACTC-CTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG gtaagtgtaggtaggagggggcaggtgtcatttcctggtgtccttcccagGTGTCACAGGCAGGACTTCCTTGCAGACTTTATACCAGACCATCTCCTCCGACTCTACCAGCTGCTGCTCTTCACCCTTCCAGGGACTCCCGTTTTCAGCTATGGGGATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtttgtactcacttattgtgttgcatggaaataatgtgtatgttatggca Alignment from CESAR GTGTCGCAAGCAGGACTC-CTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG gtaagtgtaggtaggagggggcaggtgtcatttcctggtgtccttcccagGTGTCACAGGCAGGACTTCCTTGCAGACTTTATACCAGACCATCTCCTCCGACTCTACCAGCTGCTGCTCTTCACCCTTCCAGGGACTCCCGTTTTCAGCTATGGGGATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtttgtactcacttattgtgttgcatggaaataatgtgtatgttatggca Alignment from Spaln_aa2Genome ACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG gtaagtgtaggtaggagggggcaggtgtcatttcctggtgtccttcccaggtgtcacaggcaggacttccttgcagACTTTATACCAGACCATCTCCTCCGACTCTACCAGCTGCTGCTCTTCACCCTTCCAGGGACTCCCGTTTTCAGCTATGGGGATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtttgtactcacttattgtgttgcatggaaataatgtgtatgttatggca Alignment from Spaln_nt2Genome GTGTCGCAAGCAGGACT-CCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG gtaagtgtaggtaggagggggcaggtgtcatttcctggtgtccttcccagGTGTCACAGGCAGGACTTCCTTGCAGACTTTATACCAGACCATCTCCTCCGACTCTACCAGCTGCTGCTCTTCACCCTTCCAGGGACTCCCGTTTTCAGCTATGGGGATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtttgtactcacttattgtgttgcatggaaataatgtgtatgttatggca Alignment from Pairagon GTGTCGCAAGCAGGAC-TCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG gtaagtgtaggtaggagggggcaggtgtcatttcctggtgtccttcccagGTGTCACAGGCAGGACTTCCTTGCAGACTTTATACCAGACCATCTCCTCCGACTCTACCAGCTGCTGCTCTTCACCCTTCCAGGGACTCCCGTTTTCAGCTATGGGGATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtttgtactcacttattgtgttgcatggaaataatgtgtatgttatggca Alignment from Exonerate_protein2genome GTGTCGCAAGCAGGACTC-CTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG gtaagtgtaggtaggagggggcaggtgtcatttcctggtgtccttcccagGTGTCACAGGCAGGACTTCCTTGCAGACTTTATACCAGACCATCTCCTCCGACTCTACCAGCTGCTGCTCTTCACCCTTCCAGGGACTCCCGTTTTCAGCTATGGGGATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtttgtactcacttattgtgttgcatggaaataatgtgtatgttatggca Alignment from Exonerate_coding2genome GTGTCGCAAGCAGGACTC-CTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG gtaagtgtaggtaggagggggcaggtgtcatttcctggtgtccttcccagGTGTCACAGGCAGGACTTCCTTGCAGACTTTATACCAGACCATCTCCTCCGACTCTACCAGCTGCTGCTCTTCACCCTTCCAGGGACTCCCGTTTTCAGCTATGGGGATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtttgtactcacttattgtgttgcatggaaataatgtgtatgttatggca Alignment from GeneWise AGCAGGACTCCTCGCAGACTTTATACCGGACCATCTTCTCCGACTCTACCAGCTGCTGCTCTTCACTCTGCCAGGGACTCCTGTTTTTAGCTACGGGGATGAGCTTGGCCTTCAGGGTGCCCTTCCTGGACAG gtaagtgtaggtaggagggggcaggtgtcatttcctggtgtccttcccaggtgtcacagGCAGGACTTCCTTGCAGACTTTATACCAGACCATCTCCTCCGACTCTACCAGCTGCTGCTCTTCACCCTTCCAGGGACTCCCGTTTTCAGCTATGGGGATGAACTTGGCCTTCAGGGTGCCCTTCCTGGACAAgtttgtactcacttattgtgttgcatggaaataatgtgtatgttatggca #### Slit1_ID8232_7 --> 1 - 2 Original Alignment gACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCC-AAGCTTCGGACCtt tccttttttgggcgtgggcggccaggcactttttttttttttaactacagcACACTCAATAATAATAACATCAGCACTATCCCGGTGTCCAGTTTCAATCATATCCCTCAAGCTGCGCACTttgtatgtcatcttggccatttgtgcatcaccttggctgtggaaaaagagtc Alignment from CESAR gACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCC-AAGCTTCGGACCtt tccttttttgggcgtgggcggccaggcactttttttttttttaactacagcACACTCAATAATAATAACATCAGCACTATCCCGGTGTCCAGTTTCAATCATATCCCTCAAGCTGCGCACTttgtatgtcatcttggccatttgtgcatcaccttggctgtggaaaaagagtc Alignment from Spaln_aa2Genome GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCC-AAGCTTCGGACCTT tccttttttgggcgtgggcggccaggcactttttttttttttaactacagCACACTCAATAATAATAACATCAGCACTATCCCGGTGTCCAGTTTCAATCATATCCCTcAAGCTGCGCACTTTgtatgtcatcttggccatttgtgcatcaccttggctgtggaaaaagagtc Alignment from Spaln_nt2Genome GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCC-CAAGCTTCGGACCTT tccttttttgggcgtgggcggccaggcactttttttttttttaactacagCACACTCAATAATAATAACATCAGCACTATCCCGGTGTCCAGTTTCAATCATATCCCTCAAGCTGCGCACTTTgtatgtcatcttggccatttgtgcatcaccttggctgtggaaaaagagtc Alignment from Pairagon GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCC-CAAGCTTCGGACCTT tccttttttgggcgtgggcggccaggcactttttttttttttaactacagCACACTCAATAATAATAACATCAGCACTATCCCGGTGTCCAGTTTCAATCATATCCCTCAAGCTGCGCACTTTgtatgtcatcttggccatttgtgcatcaccttggctgtggaaaaagagtc Alignment from Exonerate_protein2genome GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCC-AAGCTTCGGACCTT tccttttttgggcgtgggcggccaggcactttttttttttttaactacagCACACTCAATAATAATAACATCAGCACTATCCCGGTGTCCAGTTTCAATCATATCCCTCAAGCTGCGCACTTTgtatgtcatcttggccatttgtgcatcaccttggctgtggaaaaagagtc Alignment from Exonerate_coding2genome GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCC-AAGCTTCGGACCTT tccttttttgggcgtgggcggccaggcactttttttttttttaactacagCACACTCAATAATAATAACATCAGCACTATCCCGGTGTCCAGTTTCAATCATATCCCTCAAGCTGCGCACTTTgtatgtcatcttggccatttgtgcatcaccttggctgtggaaaaagagtc Alignment from GeneWise GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTTC-------------------- tccttttttgggcgtgggcggccaggcactttttttttttttaactacagCACACTCAATAATAATAACATCAGCACTATCCCGGTGTCCAGTTTCAATCATATCCCTCAAGCTGCGCACTTTGTATGTCATCTTGGCCATTTgtgcatcaccttggctgtggaaaaagagtc #### Slk_ID10264_16 --> 0 - 0 Original Alignment GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAG-ACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG aaaacagccatctataagcaaaattagtgcttgccttccacaccctacagGAAACAGAGCAAATGCAACGTTACAATCAACGACTTATTGAAGAGCTGAAAAATAGACAGACTCAAGAGAGAGCAAGACTGGCCAAAATTCAAAGAAGTGAATCAAAACACAAGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACACCCGACCAGGATCATGAAAAAATTAAACAAgtaagtgacagttcaatttctttacctcgatttaagacttaagttgaaac Alignment from CESAR GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAG-ACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG aaaacagccatctataagcaaaattagtgcttgccttccacaccctacagGAAACAGAGCAAATGCAACGTTACAATCAACGACTTATTGAAGAGCTGAAAAATAGACAGACTCAAGAGAGAGCAAGACTGGCCAAAATTCAAAGAAGTGAATCAAAACACAAGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACACCCGACCAGGATCATGAAAAAATTAAACAAgtaagtgacagttcaatttctttacctcgatttaagacttaagttgaaac Alignment from Spaln_aa2Genome GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAG-ACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG aaaacagccatctataagcaaaattagtgcttgccttccacaccctacagGAAACAGAGCAAATGCAACGTTACAATCAACGACTTATTGAAGAGCTGAAAAATAGACAGACTCAAGAGAGAGCAAGACTGGCCAAAATTCAAAGAAGTGAATCAAAAcACAAGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACACCCGACCAGGATCATGAAAAAATTAAACAAgtaagtgacagttcaatttctttacctcgatttaagacttaagttgaaac Alignment from Spaln_nt2Genome GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAG-ACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG aaaacagccatctataagcaaaattagtgcttgccttccacaccctacagGAAACAGAGCAAATGCAACGTTACAATCAACGACTTATTGAAGAGCTGAAAAATAGACAGACTCAAGAGAGAGCAAGACTGGCCAAAATTCAAAGAAGTGAATCAAAACACAAGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACACCCGACCAGGATCATGAAAAAATTAAACAAgtaagtgacagttcaatttctttacctcgatttaagacttaagttgaaac Alignment from Pairagon GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAG-ACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG aaaacagccatctataagcaaaattagtgcttgccttccacaccctacagGAAACAGAGCAAATGCAACGTTACAATCAACGACTTATTGAAGAGCTGAAAAATAGACAGACTCAAGAGAGAGCAAGACTGGCCAAAATTCAAAGAAGTGAATCAAAACACAAGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACACCCGACCAGGATCATGAAAAAATTAAACAAgtaagtgacagttcaatttctttacctcgatttaagacttaagttgaaac Alignment from Exonerate_protein2genome GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAG-ACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG aaaacagccatctataagcaaaattagtgcttgccttccacaccctacagGAAACAGAGCAAATGCAACGTTACAATCAACGACTTATTGAAGAGCTGAAAAATAGACAGACTCAAGAGAGAGCAAGACTGGCCAAAATTCAAAGAAGTGAATCAAAACACAAGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACACCCGACCAGGATCATGAAAAAATTAAACAAgtaagtgacagttcaatttctttacctcgatttaagacttaagttgaaac Alignment from Exonerate_coding2genome GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCCAAG-ACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG aaaacagccatctataagcaaaattagtgcttgccttccacaccctacagGAAACAGAGCAAATGCAACGTTACAATCAACGACTTATTGAAGAGCTGAAAAATAGACAGACTCAAGAGAGAGCAAGACTGGCCAAAATTCAAAGAAGTGAATCAAAACACAAGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACACCCGACCAGGATCATGAAAAAATTAAACAAgtaagtgacagttcaatttctttacctcgatttaagacttaagttgaaac Alignment from GeneWise GAAACAGAACAAATGCAGCGCTACAATCAACGACTTATTGAAGAACTGAAAAACAGACAGACTCAGGAACGAGCGAGACTGCCCAAGATTCAAAGAAGTGAAGCC-AAGACACGAATGGCCATGTTTAAAAAAAGTTTGAGGATCAACTCAACAGCCACACCAGACCAGGACCGTGAAAAAATTAAACAG aaaacagccatctataagcaaaattagtgcttgccttccacaccctacagGAAACAGAGCAAATGCAACGTTACAATCAACGACTTATTGAAGAGCTGAAAAATAGACAGACTCAAGAGAGAGCAAGACTGGCCAAAATTCAAAGAAGTGAATCAAAACACAAGAATGGCCATGTTTAAGAAAAGTTTGCGGATCAATTCAACAGCCACACCCGACCAGGATCATGAAAAAATTAAACAAgtaagtgacagttcaatttctttacctcgatttaagacttaagttgaaac #### Smc3_ID11318_6 --> 0 - 2 Original Alignment ATTGATAAAGAGGAAGTTTCACTTCGAAGA-GTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCac ttgttctggttggccatctgggctctctaactttccttttgttctttaagATTGATAAAGAGGAAGTTTCACTTCGAAGACGTTATTGGTGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGGTCacgtaagttttctttttgctcatagtgtgttacagatgatcaagaaaacata Alignment from CESAR ATTGATAAAGAGGAAGTTTCACTTCGAAGA-GTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCac ttgttctggttggccatctgggctctctaactttccttttgttctttaagATTGATAAAGAGGAAGTTTCACTTCGAAGACGTTATTGGTGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGGTCacgtaagttttctttttgctcatagtgtgttacagatgatcaagaaaacata Alignment from Spaln_aa2Genome ATTGATAAAGAGGAAGTTTCACTTCGAAGA-GTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC ttgttctggttggccatctgggctctctaactttccttttgttctttaagATTGATAAAGAGGAAGTTTCACTTCGAAGAcGTTATTGGTGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGGTCACgtaagttttctttttgctcatagtgtgttacagatgatcaagaaaacata Alignment from Spaln_nt2Genome ATTGATAAAGAGGAAGTTTCACTTCGAAGA-GTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC ttgttctggttggccatctgggctctctaactttccttttgttctttaagATTGATAAAGAGGAAGTTTCACTTCGAAGACGTTATTGGTGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGGTCACgtaagttttctttttgctcatagtgtgttacagatgatcaagaaaacata Alignment from Pairagon ATTGATAAAGAGGAAGTTTCACTTCGAAGA-GTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC ttgttctggttggccatctgggctctctaactttccttttgttctttaagATTGATAAAGAGGAAGTTTCACTTCGAAGACGTTATTGGTGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGGTCACgtaagttttctttttgctcatagtgtgttacagatgatcaagaaaacata Alignment from Exonerate_protein2genome ATTGATAAAGAGGAAGTTTCACTTCGAAGA-GTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC ttgttctggttggccatctgggctctctaactttccttttgttctttaagATTGATAAAGAGGAAGTTTCACTTCGAAGACGTTATTGGTGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGGTCACgtaagttttctttttgctcatagtgtgttacagatgatcaagaaaacata Alignment from Exonerate_coding2genome ATTGATAAAGAGGAAGTTTCACTTCGAAGA-GTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC ttgttctggttggccatctgggctctctaactttccttttgttctttaagATTGATAAAGAGGAAGTTTCACTTCGAAGACGTTATTGGTGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGGTCACgtaagttttctttttgctcatagtgtgttacagatgatcaagaaaacata Alignment from GeneWise ATTGATAAAGAGGAAGTTTCACTTCGAAGA-GTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCAC ttgttctggttggccatctgggctctctaactttccttttgttctttaagATTGATAAAGAGGAAGTTTCACTTCGAAGACGTTATTGGTGCTAAAAAGGATCTGTATTTTCTAGATCAGAAGATGGTCACgtaagttttctttttgctcatagtgtgttacagatgatcaagaaaacata #### Smc3_ID11323_11 --> 0 - 0 Original Alignment GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGT-GCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgcgatcccacaatccctgtgttatactagtgttctttctcccccaacagGATACTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTCAGTCGCTGAAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAGCTTAAGGCCAAAGATTTACAAGTTGAGCTGGCTGGGAACAGCGAACAGCGCgtgagacaccacgcaagcgaaaactgatcagatttcagtgtagtgaagaa Alignment from CESAR GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGT-GCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgcgatcccacaatccctgtgttatactagtgttctttctcccccaacagGATACTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTCAGTCGCTGAAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAGCTTAAGGCCAAAGATTTACAAGTTGAGCTGGCTGGGAACAGCGAACAGCGCgtgagacaccacgcaagcgaaaactgatcagatttcagtgtagtgaagaa Alignment from Spaln_aa2Genome GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGT-GCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgcgatcccacaatccctgtgttatactagtgttctttctcccccaacagGATACTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTCAGTcGCTGAAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAGCTTAAGGCCAAAGATTTACAAGTTGAGCTGGCTGGGAACAGCGAACAGCGCgtgagacaccacgcaagcgaaaactgatcagatttcagtgtagtgaagaa Alignment from Spaln_nt2Genome GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGT-GCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgcgatcccacaatccctgtgttatactagtgttctttctcccccaacagGATACTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTCAGTCGCTGAAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAGCTTAAGGCCAAAGATTTACAAGTTGAGCTGGCTGGGAACAGCGAACAGCGCgtgagacaccacgcaagcgaaaactgatcagatttcagtgtagtgaagaa Alignment from Pairagon GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGT-GCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgcgatcccacaatccctgtgttatactagtgttctttctcccccaacagGATACTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTCAGTCGCTGAAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAGCTTAAGGCCAAAGATTTACAAGTTGAGCTGGCTGGGAACAGCGAACAGCGCgtgagacaccacgcaagcgaaaactgatcagatttcagtgtagtgaagaa Alignment from Exonerate_protein2genome GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGT-GCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgcgatcccacaatccctgtgttatactagtgttctttctcccccaacagGATACTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTCAGTCGCTGAAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAGCTTAAGGCCAAAGATTTACAAGTTGAGCTGGCTGGGAACAGCGAACAGCGCgtgagacaccacgcaagcgaaaactgatcagatttcagtgtagtgaagaa Alignment from Exonerate_coding2genome GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTTAGT-GCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgcgatcccacaatccctgtgttatactagtgttctttctcccccaacagGATACTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTCAGTCGCTGAAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAGCTTAAGGCCAAAGATTTACAAGTTGAGCTGGCTGGGAACAGCGAACAGCGCgtgagacaccacgcaagcgaaaactgatcagatttcagtgtagtgaagaa Alignment from GeneWise GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTT-AGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgcgatcccacaatccctgtgttatactagtgttctttctcccccaacagGATACTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAAAAGAACAGCTCAGTCGCTGAAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAGCTTAAGGCCAAAGATTTACAAGTTGAGCTGGCTGGGAACAGCGAACAGCGCgtgagacaccacgcaagcgaaaactgatcagatttcagtgtagtgaagaa #### Smc3_ID11337_25 --> 0 - 0 Original Alignment TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTAC-AGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG ggaaactcactcgcagtgcctagtaattcatgctcttttctccctctcagTTATTCCAAAAACTGGAGCAATGCAACACAGAATTAAAGAAATATCGGCCGTGTGAACAAAAAGGCACTTGATCAGCTGGTGAACTTTTCTGAGCAGAAGGAAAAGTTGATAAAGTGGCAGGAGGAACTGGATAGC---TATAAATCAGTCATGGAACTGATGAATGTACTGGAACTAAAGAAACATGAAGCTGTTCATTTAACTTTCAAGCAAgtaaccaataagttatcctagtgtgcagagcgagtgaatgtgtgtaaaat Alignment from CESAR TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTAC-AGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG ggaaactcactcgcagtgcctagtaattcatgctcttttctccctctcagTTATTCCAAAAACTGGAGCAATGCAACACAGAATTAAAGAAATATCGGCCGTGTGAACAAAAAGGCACTTGATCAGCTGGTGAACTTTTCTGAGCAGAAGGAAAAGTTGATAAAGTGGCAGGAGGAACTGGAT---AGCTATAAATCAGTCATGGAACTGATGAATGTACTGGAACTAAAGAAACATGAAGCTGTTCATTTAACTTTCAAGCAAgtaaccaataagttatcctagtgtgcagagcgagtgaatgtgtgtaaaat Alignment from Spaln_aa2Genome TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTAC-AGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG ggaaactcactcgcagtgcctagtaattcatgctcttttctccctctcagTTATTCCAAAAACTGGAGCAATGCAACACAGAATTAAAGAAATATcGGCCGTGTGAACAAAAAGGCACTTGATCAGCTGGTGAACTTTTCTGAGCAGAAGGAAAAGTTGATAAAGTGGCAGGAGGAACTGGAT---AGCTATAAATCAGTCATGGAACTGATGAATGTACTGGAACTAAAGAAACATGAAGCTGTTCATTTAACTTTCAAGCAAgtaaccaataagttatcctagtgtgcagagcgagtgaatgtgtgtaaaat Alignment from Spaln_nt2Genome TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTA-CAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG ggaaactcactcgcagtgcctagtaattcatgctcttttctccctctcagTTATTCCAAAAACTGGAGCAATGCAACACAGAATTAAAGAAATATCGGCCGTGTGAACAAAAAGGCACTTGATCAGCTGGTGAACTTTTCTGAGCAGAAGGAAAAGTTGATAAAGTGGCAGGAGGAACTGGATAG---CTATAAATCAGTCATGGAACTGATGAATGTACTGGAACTAAAGAAACATGAAGCTGTTCATTTAACTTTCAAGCAAgtaaccaataagttatcctagtgtgcagagcgagtgaatgtgtgtaaaat Alignment from Pairagon TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTA-CAGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG ggaaactcactcgcagtgcctagtaattcatgctcttttctccctctcagTTATTCCAAAAACTGGAGCAATGCAACACAGAATTAAAGAAATATCGGCCGTGTGAACAAAAAGGCACTTGATCAGCTGGTGAACTTTTCTGAGCAGAAGGAAAAGTTGATAAAGTGGCAGGAGGAACTGGATA---GCTATAAATCAGTCATGGAACTGATGAATGTACTGGAACTAAAGAAACATGAAGCTGTTCATTTAACTTTCAAGCAAgtaaccaataagttatcctagtgtgcagagcgagtgaatgtgtgtaaaat Alignment from Exonerate_protein2genome TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTAC-AGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG ggaaactcactcgcagtgcctagtaattcatgctcttttctccctctcagTTATTCCAAAAACTGGAGCAATGCAACACAGAATTAAAGAAATATCGGCCGTGTGAACAAAAAGGCACTTGATCAGCTGGTGAACTTTTCTGAGCAGAAGGAAAAGTTGATAAAGTGGCAGGAGGAACTGGAT---AGCTATAAATCAGTCATGGAACTGATGAATGTACTGGAACTAAAGAAACATGAAGCTGTTCATTTAACTTTCAAGCAAgtaaccaataagttatcctagtgtgcagagcgagtgaatgtgtgtaaaat Alignment from Exonerate_coding2genome TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTAC-AGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG ggaaactcactcgcagtgcctagtaattcatgctcttttctccctctcagTTATTCCAAAAACTGGAGCAATGCAACACAGAATTAAAGAAATATCGGCCGTGTGAACAAAAAGGCACTTGATCAGCTGGTGAACTTTTCTGAGCAGAAGGAAAAGTTGATAAAGTGGCAGGAGGAACTGGAT---AGCTATAAATCAGTCATGGAACTGATGAATGTACTGGAACTAAAGAAACATGAAGCTGTTCATTTAACTTTCAAGCAAgtaaccaataagttatcctagtgtgcagagcgagtgaatgtgtgtaaaat Alignment from GeneWise TTGTTTCGAAAACTGGAGCAATGCAACACAGAGTTAAAGAAGTAC-AGCCACGTGAACAAAAAGGCTCTAGATCAGTTTGTGAATTTCTCTGAGCAGAAGGAAAAGCTGATAAAGCGGCAAGAGGAATTGGATAGAGGCTACAAATCAATCATGGAATTGATGAATGTACTTGAACTTAGAAAATATGAAGCTATTCAGTTAACTTTCAAACAG ggaaactcactcgcagtgcctagtaattcatgctcttttctccctctcagTTATTCCAAAAACTGGAGCAATGCAACACAGAATTAAAGAAATATCGGCCGTGTGAACAAAAAGGCACTTGATCAGCTGGTGAACTTTTCTGAGCAGAAGGAAAAGTTGATAAAGTGGCAGGAGGAACTGGAT---AGCTATAAATCAGTCATGGAACTGATGAATGTACTGGAACTAAAGAAACATGAAGCTGTTCATTTAACTTTCAAGCAAgtaaccaataagttatcctagtgtgcagagcgagtgaatgtgtgtaaaat #### Smc3_ID11338_26 --> 0 - 0 Original Alignment GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGC-CAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG tttcaagcatagaagcatgccacctaagccgcattgtttttgtgttttagGTATCTAAGAACTTCAGTGAAGTCTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGCCGAATCTCAGGACAAAGGAGAAGGGAGTGGTGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgactttttatacttagtttctgttataccttttcaattcaaaac Alignment from CESAR GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGC-CAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG tttcaagcatagaagcatgccacctaagccgcattgtttttgtgttttagGTATCTAAGAACTTCAGTGAAGTCTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGCCGAATCTCAGGACAAAGGAGAAGGGAGTGGTGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgactttttatacttagtttctgttataccttttcaattcaaaac Alignment from Spaln_aa2Genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGC-CAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG tttcaagcatagaagcatgccacctaagccgcattgtttttgtgttttagGTATCTAAGAACTTCAGTGAAGTCTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGCcGAATCTCAGGACAAAGGAGAAGGGAGTGGTGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgactttttatacttagtttctgttataccttttcaattcaaaac Alignment from Spaln_nt2Genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCC-AGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG tttcaagcatagaagcatgccacctaagccgcattgtttttgtgttttagGTATCTAAGAACTTCAGTGAAGTCTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGCCGAATCTCAGGACAAAGGAGAAGGGAGTGGTGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgactttttatacttagtttctgttataccttttcaattcaaaac Alignment from Pairagon GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGCC-AGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG tttcaagcatagaagcatgccacctaagccgcattgtttttgtgttttagGTATCTAAGAACTTCAGTGAAGTCTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGCCGAATCTCAGGACAAAGGAGAAGGGAGTGGTGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgactttttatacttagtttctgttataccttttcaattcaaaac Alignment from Exonerate_protein2genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGC-CAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG tttcaagcatagaagcatgccacctaagccgcattgtttttgtgttttagGTATCTAAGAACTTCAGTGAAGTCTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGCCGAATCTCAGGACAAAGGAGAAGGGAGTGGTGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgactttttatacttagtttctgttataccttttcaattcaaaac Alignment from Exonerate_coding2genome GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGC-CAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG tttcaagcatagaagcatgccacctaagccgcattgtttttgtgttttagGTATCTAAGAACTTCAGTGAAGTCTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGCCGAATCTCAGGACAAAGGAGAAGGGAGTGGTGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgactttttatacttagtttctgttataccttttcaattcaaaac Alignment from GeneWise GTATCTAAGAACTTCAGTGAAGTTTTCCAGAAGTTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGAGATGTGGAGGGCAGC-CAGTCTCAGGACGAAGGAGAAGGGAGTGGCGAGAGTGAGCGGGGCTCTGGGTCACAGAGCAGTGTTCCATCAGTTGACCAGTTCACAGGAGTTGGGATCAGG tttcaagcatagaagcatgccacctaagccgcattgtttttgtgttttagGTATCTAAGAACTTCAGTGAAGTCTTCCAGAAATTGGTACCTGGTGGCAAAGCGACTTTGGTGATGAAGAAAGGTGATGTGGAGGGCAGCCGAATCTCAGGACAAAGGAGAAGGGAGTGGTGAGAGTGAGCGGGGCTCTGGGTCACAGTGCAGTGTTCCATCAGTTGACCAATTCACAGGAGTTGGGATCAGGgtaagtgactttttatacttagtttctgttataccttttcaattcaaaac #### Smc5_ID5110_21 --> 0 - 0 Original Alignment GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATA-CAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG ttttcattttatcccttgataaattttactgctctcgtctgttctttgagGTGGTTGAGAAGTATTCAAAGAGAGAAGTAGAGATACCAGCAATTGACTGAAGAACTGCAAGGTAAAAAAGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtgagtcatagtctgattctggtgtcatgattgtgatgtgattacaaact Alignment from CESAR GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATA-CAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG ttttcattttatcccttgataaattttactgctctcgtctgttctttgagGTGGTTGAGAAGTATTCAAAGAGAGAAGTAGAGATACCAGCAATTGACTGAAGAACTGCAAGGTAAAAAAGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtgagtcatagtctgattctggtgtcatgattgtgatgtgattacaaact Alignment from Spaln_aa2Genome GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATA-CAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG ttttcattttatcccttgataaattttactgctctcgtctgttctttgagGTGGTTGAGAAGTATTCAAAGAGAGAAGTAGAGATAcCAGCAATTGACTGAAGAACTGCAAGGTAAAAAAGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtgagtcatagtctgattctggtgtcatgattgtgatgtgattacaaact Alignment from Spaln_nt2Genome GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATAC-AGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG ttttcattttatcccttgataaattttactgctctcgtctgttctttgagGTGGTTGAGAAGTATTCAAAGAGAGAAGTAGAGATACCAGCAATTGACTGAAGAACTGCAAGGTAAAAAAGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtgagtcatagtctgattctggtgtcatgattgtgatgtgattacaaact Alignment from Pairagon GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATA-CAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG ttttcattttatcccttgataaattttactgctctcgtctgttctttgagGTGGTTGAGAAGTATTCAAAGAGAGAAGTAGAGATACCAGCAATTGACTGAAGAACTGCAAGGTAAAAAAGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtgagtcatagtctgattctggtgtcatgattgtgatgtgattacaaact Alignment from Exonerate_protein2genome GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATA-CAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG ttttcattttatcccttgataaattttactgctctcgtctgttctttgagGTGGTTGAGAAGTATTCAAAGAGAGAAGTAGAGATACCAGCAATTGACTGAAGAACTGCAAGGTAAAAAAGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtgagtcatagtctgattctggtgtcatgattgtgatgtgattacaaact Alignment from Exonerate_coding2genome GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAAATA-CAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG ttttcattttatcccttgataaattttactgctctcgtctgttctttgagGTGGTTGAGAAGTATTCAAAGAGAGAAGTAGAGATACCAGCAATTGACTGAAGAACTGCAAGGTAAAAAAGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtgagtcatagtctgattctggtgtcatgattgtgatgtgattacaaact Alignment from GeneWise GTGGTTGAGGAGTACTCAAAAAGAGAAGTAGAA-ATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG ttttcattttatcccttgataaattttactgctctcgtctgttctttgagGTGGTTGAGAAGTATTCAAAGAGAGAAGTAGAGATACCAGCAATTGACTGAAGAACTGCAAGGTAAAAAAGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtgagtcatagtctgattctggtgtcatgattgtgatgtgattacaaact #### Snx15_ID1465_7 --> 2 - 1 Original Alignment aaAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAGGAA-CCCTGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAGCCT------GCCCCAGCTTACCTTGGCCAGGCCACAGAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGCAGGGTGTCTCAg agtcatgaataaataggtccccatggggattcaaatattcttcattttagaaAGTACAGGCCCCAGCCCAACCCATCCTGGTGAGTTAACAGCCATTGAGGTAGGGGCTAAGAAGCTGGATCATGAACCCCTGGGAGCCAGGTGGACAGGAGCAGGAGGAAGCTGAGGATGGAGAGCCTGCTCCAGCTCCACCTTATCTTGGCCAGGCAACAGAGCTTATCACTCAAACTGTGCGAAATGAAAAGGCAGGCACCTACACTGCTGCCCTCCAAGGCTACCAAGATGGAGTGCACATCCTTCTGCAGGGTGTTTCTggtgaggagtaaggaggctaagtggaaaacaaaagtccaaatgatgtagtg Alignment from CESAR aaAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAGGAA-CCCTGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAGCCTGCCCCAGCT------TACCTTGGCCAGGCCACAGAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGCAGGGTGTCTCAg agtcatgaataaataggtccccatggggattcaaatattcttcattttagaaAGTACAGGCCCCAGCCCAACCCATCCTGGTGAGTTAACAGCCATTGAGGTAGGGGCTAAGAAGCTGGATCATGAACCCCTGGGAGCCAGGTGGACAGGAGCAGGAGGAAGCTGAGGATGGAGAGCCTGCTCCAGCTCCACCTTATCTTGGCCAGGCAACAGAGCTTATCACTCAAACTGTGCGAAATGAAAAGGCAGGCACCTACACTGCTGCCCTCCAAGGCTACCAAGATGGAGTGCACATCCTTCTGCAGGGTGTTTCTggtgaggagtaaggaggctaagtggaaaacaaaagtccaaatgatgtagtg Alignment from Spaln_aa2Genome AAAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAGGAACCC-TGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAG------CCTGCCCCAGCTTACCTTGGCCAGGCCACAGAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGCAGGGTGTCTCAG agtcatgaataaataggtccccatggggattcaaatattcttcattttagAAAGTACAGGCCCCAGCCCAACCCATCCTGGTGAGTTAACAGCCATTGAGGTAGGGGCTAAGAAGCTGGATCATGAACCCcTGGGAGCCAGGTGGACAGGAGCAGGAGGAAGCTGAGGATGGAGAGCCTGCTCCAGCTCCACCTTATCTTGGCCAGGCAACAGAGCTTATCACTCAAACTGTGCGAAATGAAAAGGCAGGCACCTACACTGCTGCCCTCCAAGGCTACCAAGATGGAGTGCACATCCTTCTGCAGGGTGTTTCTGgtgaggagtaaggaggctaagtggaaaacaaaagtccaaatgatgtagtg Alignment from Spaln_nt2Genome AAAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAGGAACCC-TGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAGCCTGCC------CCAGCTTACCTTGGCCAGGCCACAGAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGCAGGGTGTCTCAG agtcatgaataaataggtccccatggggattcaaatattcttcattttagAAAGTACAGGCCCCAGCCCAACCCATCCTGGTGAGTTAACAGCCATTGAGGTAGGGGCTAAGAAGCTGGATCATGAACCCCTGGGAGCCAGGTGGACAGGAGCAGGAGGAAGCTGAGGATGGAGAGCCTGCTCCAGCTCCACCTTATCTTGGCCAGGCAACAGAGCTTATCACTCAAACTGTGCGAAATGAAAAGGCAGGCACCTACACTGCTGCCCTCCAAGGCTACCAAGATGGAGTGCACATCCTTCTGCAGGGTGTTTCTGgtgaggagtaaggaggctaagtggaaaacaaaagtccaaatgatgtagtg Alignment from Pairagon AAAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAGGAA-CCCTGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAGCCTGCCCCAG------CTTACCTTGGCCAGGCCACAGAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGCAGGGTGTCTCAG agtcatgaataaataggtccccatggggattcaaatattcttcattttagAAAGTACAGGCCCCAGCCCAACCCATCCTGGTGAGTTAACAGCCATTGAGGTAGGGGCTAAGAAGCTGGATCATGAACCCCTGGGAGCCAGGTGGACAGGAGCAGGAGGAAGCTGAGGATGGAGAGCCTGCTCCAGCTCCACCTTATCTTGGCCAGGCAACAGAGCTTATCACTCAAACTGTGCGAAATGAAAAGGCAGGCACCTACACTGCTGCCCTCCAAGGCTACCAAGATGGAGTGCACATCCTTCTGCAGGGTGTTTCTGgtgaggagtaaggaggctaagtggaaaacaaaagtccaaatgatgtagtg Alignment from Exonerate_protein2genome AAAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAGGAA-CCCTGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAGCCTGCCCCAGCT------TACCTTGGCCAGGCCACAGAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGCAGGGTGTCTCAG agtcatgaataaataggtccccatggggattcaaatattcttcattttagAAAGTACAGGCCCCAGCCCAACCCATCCTGGTGAGTTAACAGCCATTGAGGTAGGGGCTAAGAAGCTGGATCATGAACCCCTGGGAGCCAGGTGGACAGGAGCAGGAGGAAGCTGAGGATGGAGAGCCTGCTCCAGCTCCACCTTATCTTGGCCAGGCAACAGAGCTTATCACTCAAACTGTGCGAAATGAAAAGGCAGGCACCTACACTGCTGCCCTCCAAGGCTACCAAGATGGAGTGCACATCCTTCTGCAGGGTGTTTCTGgtgaggagtaaggaggctaagtggaaaacaaaagtccaaatgatgtagtg Alignment from Exonerate_coding2genome AAAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAGGAA-CCCTGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAGCCTGCCCCAGCT------TACCTTGGCCAGGCCACAGAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGCAGGGTGTCTCAG agtcatgaataaataggtccccatggggattcaaatattcttcattttagAAAGTACAGGCCCCAGCCCAACCCATCCTGGTGAGTTAACAGCCATTGAGGTAGGGGCTAAGAAGCTGGATCATGAACCCCTGGGAGCCAGGTGGACAGGAGCAGGAGGAAGCTGAGGATGGAGAGCCTGCTCCAGCTCCACCTTATCTTGGCCAGGCAACAGAGCTTATCACTCAAACTGTGCGAAATGAAAAGGCAGGCACCTACACTGCTGCCCTCCAAGGCTACCAAGATGGAGTGCACATCCTTCTGCAGGGTGTTTCTGgtgaggagtaaggaggctaagtggaaaacaaaagtccaaatgatgtagtg Alignment from GeneWise AAAGTACAGGCCCCAGCCCTACCCACACAGGTGAGCTGGCAGCCATTGAGGTAGAGTCCAAAAGGCTGGACCAG-GAACCCTGGGAGCCAGGAGGACAGGAGGAGGAAGAAGCTGAGGATGGAGAGCCTGCCCCAGCT------TACCTTGGCCAGGCCACAGAGCTCATCACTCAAGCCCTGCGGAATGAAAAGGCTGGCGCCTACGCTGCTGCTCTCCAAGGCTACCAAGATGGGGTGCACATTCTTCTGCAGGGTGTCTCAG agtcatgaataaataggtccccatggggattcaaatattcttcattttagAAAGTACAGGCCCCAGCCCAACCCATCCTGGTGAGTTAACAGCCATTGAGGTAGGGGCTAAGAAGCTGGATCATGAACCCCTGGGAGCCAGGTGGACAGGAGCAGGAGGAAGCTGAGGATGGAGAGCCTGCTCCAGCTCCACCTTATCTTGGCCAGGCAACAGAGCTTATCACTCAAACTGTGCGAAATGAAAAGGCAGGCACCTACACTGCTGCCCTCCAAGGCTACCAAGATGGAGTGCACATCCTTCTGCAGGGTGTTTCTGgtgaggagtaaggaggctaagtggaaaacaaaagtccaaatgatgtagtg #### Snx15_ID1468_4 --> 2 - 0 Original Alignment ggCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTG-CCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaacactgaaacattgacactgacacgtaatatactcttgggtttcaggaCGATTTGAAGCCTCTGTTATTGAGGAGCGTCGGAAAGGTGCAGATGACCTGCTGCGCTTCACAGTGCCCGATCCCTGCCCTCAACAACAGCCCTCAAGTCAAGGAATTTTTCCGAgtgagtatatgtgctaacgaggtcccctcttaatcaaatccactggcctc Alignment from CESAR ggCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCC-ATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaacactgaaacattgacactgacacgtaatatactcttgggtttcaggaCGATTTGAAGCCTCTGTTATTGAGGAGCGTCGGAAAGGTGCAGATGACCTGCTGCGCTTCACAGTGCCCGATCCCTGCCCTCAACAACAGCCCTCAAGTCAAGGAATTTTTCCGAgtgagtatatgtgctaacgaggtcccctcttaatcaaatccactggcctc Alignment from Spaln_aa2Genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCCATCCCT-GCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaacactgaaacattgacactgacacgtaatatactcttgggtttcagGACGATTTGAAGCCTCTGTTATTGAGGAGCGTCGGAAAGGTGCAGATGACCTGCTGCGCTTCACAGTGCCCGATCCCtGCCCTCAACAACAGCCCTCAAGTCAAGGAATTTTTCCGAgtgagtatatgtgctaacgaggtcccctcttaatcaaatccactggcctc Alignment from Spaln_nt2Genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTG-CCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaacactgaaacattgacactgacacgtaatatactcttgggtttcagGACGATTTGAAGCCTCTGTTATTGAGGAGCGTCGGAAAGGTGCAGATGACCTGCTGCGCTTCACAGTGCCCGATCCCTGCCCTCAACAACAGCCCTCAAGTCAAGGAATTTTTCCGAgtgagtatatgtgctaacgaggtcccctcttaatcaaatccactggcctc Alignment from Pairagon GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTGCCC-ATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaacactgaaacattgacactgacacgtaatatactcttgggtttcagGACGATTTGAAGCCTCTGTTATTGAGGAGCGTCGGAAAGGTGCAGATGACCTGCTGCGCTTCACAGTGCCCGATCCCTGCCCTCAACAACAGCCCTCAAGTCAAGGAATTTTTCCGAgtgagtatatgtgctaacgaggtcccctcttaatcaaatccactggcctc Alignment from Exonerate_protein2genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTG-CCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaacactgaaacattgacactgacacgtaatatactcttgggtttcagGACGATTTGAAGCCTCTGTTATTGAGGAGCGTCGGAAAGGTGCAGATGACCTGCTGCGCTTCACAGTGCCCGATCCCTGCCCTCAACAACAGCCCTCAAGTCAAGGAATTTTTCCGAgtgagtatatgtgctaacgaggtcccctcttaatcaaatccactggcctc Alignment from Exonerate_coding2genome GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACGGTG-CCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaacactgaaacattgacactgacacgtaatatactcttgggtttcagGACGATTTGAAGCCTCTGTTATTGAGGAGCGTCGGAAAGGTGCAGATGACCTGCTGCGCTTCACAGTGCCCGATCCCTGCCCTCAACAACAGCCCTCAAGTCAAGGAATTTTTCCGAgtgagtatatgtgctaacgaggtcccctcttaatcaaatccactggcctc Alignment from GeneWise GGCGGTTTGAAGCCTCTGTGATCGAGGAGCGGCGCAAGGGCGCGGAGGACCTGCTGCGCTTCACG-GTGCCCATCCCTGCACTCAACAACAGCCCCCAACTCAAGGAGTTTTTCCGG accaacactgaaacattgacactgacacgtaatatactcttgggtttcagGACGATTTGAAGCCTCTGTTATTGAGGAGCGTCGGAAAGGTGCAGATGACCTGCTGCGCTTCACAGTGCCCGATCCCTGCCCTCAACAACAGCCCTCAAGTCAAGGAATTTTTCCGAgtgagtatatgtgctaacgaggtcccctcttaatcaaatccactggcctc #### Snx32_ID1066_12 --> 2 - 0 Original Alignment agCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCC-GAACTGGAGCTCAAGCACGCCAAG gtccacccaccagaaccccattatcaatcaaatctgtgctccctgcccagaaCTCATGGACTTCAAGTCTCACAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGTTGGCTCGAGCTGGAGCTCAAGCAGGCCAAGgtagggattactgtcagctacatcacaaagaatctcctacccagtctgca Alignment from CESAR agCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCC-GAACTGGAGCTCAAGCACGCCAAG gtccacccaccagaaccccattatcaatcaaatctgtgctccctgcccagaaCTCATGGACTTCAAGTCTCACAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGTTGGCTCGAGCTGGAGCTCAAGCAGGCCAAGgtagggattactgtcagctacatcacaaagaatctcctacccagtctgca Alignment from Spaln_aa2Genome AGCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCCGAACTGGAGCTCAAG gtccacccaccagaaccccattatcaatcaaatctgtgctccctgcccagAACTCATGGACTTCAAGTCTCACAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGTTGGCTCGAGCTGGAGCTCAAgcaggccaaggtagggattactgtcagctacatcacaaagaatctcctacccagtctgca Alignment from Spaln_nt2Genome AGCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGC-CGAACTGGAGCTCAAGCACGCCAAG gtccacccaccagaaccccattatcaatcaaatctgtgctccctgcccagAACTCATGGACTTCAAGTCTCACAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGTTGGCTCGAGCTGGAGCTCAAGCAGGCCAAGgtagggattactgtcagctacatcacaaagaatctcctacccagtctgca Alignment from Pairagon AGCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGC-CGAACTGGAGCTCAAGCACGCCAAG gtccacccaccagaaccccattatcaatcaaatctgtgctccctgcccagAACTCATGGACTTCAAGTCTCACAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGTTGGCTCGAGCTGGAGCTCAAGCAGGCCAAGgtagggattactgtcagctacatcacaaagaatctcctacccagtctgca Alignment from Exonerate_protein2genome AGCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCC-GAACTGGAGCTCAAGCACGCCAAG gtccacccaccagaaccccattatcaatcaaatctgtgctccctgcccagAACTCATGGACTTCAAGTCTCACAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGTTGGCTCGAGCTGGAGCTCAAGCAGGCCAAGgtagggattactgtcagctacatcacaaagaatctcctacccagtctgca Alignment from Exonerate_coding2genome AGCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCC-GAACTGGAGCTCAAGCACGCCAAG gtccacccaccagaaccccattatcaatcaaatctgtgctccctgcccagAACTCATGGACTTCAAGTCTCACAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGTTGGCTCGAGCTGGAGCTCAAGCAGGCCAAGgtagggattactgtcagctacatcacaaagaatctcctacccagtctgca Alignment from GeneWise AGCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGCTGGCC gtccacccaccagaaccccattatcaatcaaatctgtgctccctgcccagAACTCATGGACTTCAAGTCTCACAGGGTCTCCTCTTTCCGTAAGAATCTCATTGAGTTGGCTcgagctggagctcaagcaggccaaggtagggattactgtcagctacatcacaaagaatctcctacccagtctgca #### Snx32_ID1070_8 --> 2 - 2 Original Alignment gcCTGGCAGACAACTAT-ATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGag gcacacatacatccaattacgactgcccatgccctgccctgttcccacaggcCTGGCAGACAACTATCATTCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGGAAGTGAACCAACTGAAGaggtagacgtcacgccatgctgccttgctcactcttgtaccattactggggt Alignment from CESAR gcCTGGCAGACAACTAT-ATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGag gcacacatacatccaattacgactgcccatgccctgccctgttcccacaggcCTGGCAGACAACTATCATTCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGGAAGTGAACCAACTGAAGaggtagacgtcacgccatgctgccttgctcactcttgtaccattactggggt Alignment from Spaln_aa2Genome GCCTGGCAGACAACTAT-ATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG gcacacatacatccaattacgactgcccatgccctgccctgttcccacagGCCTGGCAGACAACTATcATTCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGGAAGTGAACCAACTGAAGAGgtagacgtcacgccatgctgccttgctcactcttgtaccattactggggt Alignment from Spaln_nt2Genome GCCTGGCAGACAACTAT-ATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG gcacacatacatccaattacgactgcccatgccctgccctgttcccacagGCCTGGCAGACAACTATCATTCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGGAAGTGAACCAACTGAAGAGgtagacgtcacgccatgctgccttgctcactcttgtaccattactggggt Alignment from Pairagon GCCTGGCAGACAACTAT-ATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG gcacacatacatccaattacgactgcccatgccctgccctgttcccacagGCCTGGCAGACAACTATCATTCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGGAAGTGAACCAACTGAAGAGgtagacgtcacgccatgctgccttgctcactcttgtaccattactggggt Alignment from Exonerate_protein2genome GCCTGGCAGACAACTAT-ATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG gcacacatacatccaattacgactgcccatgccctgccctgttcccacagGCCTGGCAGACAACTATCATTCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGGAAGTGAACCAACTGAAGAGgtagacgtcacgccatgctgccttgctcactcttgtaccattactggggt Alignment from Exonerate_coding2genome GCCTGGCAGACAACTAT-ATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG gcacacatacatccaattacgactgcccatgccctgccctgttcccacagGCCTGGCAGACAACTATCATTCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGGAAGTGAACCAACTGAAGAGgtagacgtcacgccatgctgccttgctcactcttgtaccattactggggt Alignment from GeneWise ------GCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGAAGTCAACCAACTCAAGAG gcacacatacatccaattacgactgcccatgccctgccctgttcccacagGCCTGGCAGACAACTATCATTCCCATTTCAGCTGCACTGAGCAGTCTTGGAACCCAGGAAGTGAACCAACTGAAGAGgtagacgtcacgccatgctgccttgctcactcttgtaccattactggggt #### Snx32_ID1071_7 --> 0 - 1 Original Alignment GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGA-GACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGt tgtactgcccccctcagacctggaagatgtgaatcattgctaactttcagGAGGTAGATGACTTCTTTGAGCATGAGAGGCCTTTCCTAGTTGAATATCATACCCGAATTCGCCGATACCTGCCAGAGAGCAGACCGTGTGATACACTCCCACAAAtgtatgttacatttgaggctagagcactgaatgcacacatacatccaatta Alignment from CESAR GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGA-GACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGt tgtactgcccccctcagacctggaagatgtgaatcattgctaactttcagGAGGTAGATGACTTCTTTGAGCATGAGAGGCCTTTCCTAGTTGAATATCATACCCGAATTCGCCGATACCTGCCAGAGAGCAGACCGTGTGATACACTCCCACAAAtgtatgttacatttgaggctagagcactgaatgcacacatacatccaatta Alignment from Spaln_aa2Genome GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGA-GACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT tgtactgcccccctcagacctggaagatgtgaatcattgctaactttcagGAGGTAGATGACTTCTTTGAGCATGAGAGGCCTTTCCTAGTTGAATATCATACCCGAATTCGCcGATACCTGCCAGAGAGCAGACCGTGTGATACACTCCCACAAATgtatgttacatttgaggctagagcactgaatgcacacatacatccaatta Alignment from Spaln_nt2Genome GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGA-GACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT tgtactgcccccctcagacctggaagatgtgaatcattgctaactttcagGAGGTAGATGACTTCTTTGAGCATGAGAGGCCTTTCCTAGTTGAATATCATACCCGAATTCGCCGATACCTGCCAGAGAGCAGACCGTGTGATACACTCCCACAAATgtatgttacatttgaggctagagcactgaatgcacacatacatccaatta Alignment from Pairagon GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCG-AGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT tgtactgcccccctcagacctggaagatgtgaatcattgctaactttcagGAGGTAGATGACTTCTTTGAGCATGAGAGGCCTTTCCTAGTTGAATATCATACCCGAATTCGCCGATACCTGCCAGAGAGCAGACCGTGTGATACACTCCCACAAATgtatgttacatttgaggctagagcactgaatgcacacatacatccaatta Alignment from Exonerate_protein2genome GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGA-GACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT tgtactgcccccctcagacctggaagatgtgaatcattgctaactttcagGAGGTAGATGACTTCTTTGAGCATGAGAGGCCTTTCCTAGTTGAATATCATACCCGAATTCGCCGATACCTGCCAGAGAGCAGACCGTGTGATACACTCCCACAAATgtatgttacatttgaggctagagcactgaatgcacacatacatccaatta Alignment from Exonerate_coding2genome GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGA-GACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT tgtactgcccccctcagacctggaagatgtgaatcattgctaactttcagGAGGTAGATGACTTCTTTGAGCATGAGAGGCCTTTCCTAGTTGAATATCATACCCGAATTCGCCGATACCTGCCAGAGAGCAGACCGTGTGATACACTCCCACAAATgtatgttacatttgaggctagagcactgaatgcacacatacatccaatta Alignment from GeneWise GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATC-CGAGACACCTGCCAGAGGGCCGACCGTGTTATGCACTCCCACAAGT tgtactgcccccctcagacctggaagatgtgaatcattgctaactttcagGAGGTAGATGACTTCTTTGAGCATGAGAGGCCTTTCCTAGTTGAATATCATACCCGAATTCGCCGATACCTGCCAGAGAGCAGACCGTGTGATACACTCCCACAAATgtatgttacatttgaggctagagcactgaatgcacacatacatccaatta #### Snx32_ID1072_6 --> 0 - 0 Original Alignment CTGAGTGTTCGA-GAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacactattgagattacccaagtctctttaactttttttcccataaagCTGAGTGTCCAGCGAAAAGAACAGGAAGGAAGTATCTGGGGGGCTCCTGAGAGGCATTGTAAGGTATGCAGACGAAATCCTCATCACCGGTGGCATATCAGGGCTCAAAgtatggattatctcttttgtggtaggaggaacatgccaggtagccctggg Alignment from CESAR CTGAGTGTTCGA-GAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacactattgagattacccaagtctctttaactttttttcccataaagCTGAGTGTCCAGCGAAAAGAACAGGAAGGAAGTATCTGGGGGGCTCCTGAGAGGCATTGTAAGGTATGCAGACGAAATCCTCATCACCGGTGGCATATCAGGGCTCAAAgtatggattatctcttttgtggtaggaggaacatgccaggtagccctggg Alignment from Spaln_aa2Genome AGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacactattgagattacccaagtctctttaactttttttcccataaagctgagtgtccagCGAAAAGAACAGGAAGGAAGTATCTGGGGGGCTCCTGAGAGGCATTGTAAGGTATGCAGACGAAATCCTCATCACCGGTGGCATATCAGGGCTCAAAgtatggattatctcttttgtggtaggaggaacatgccaggtagccctggg Alignment from Spaln_nt2Genome CTGAGTGTTC-GAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacactattgagattacccaagtctctttaactttttttcccataaagCTGAGTGTCCAGCGAAAAGAACAGGAAGGAAGTATCTGGGGGGCTCCTGAGAGGCATTGTAAGGTATGCAGACGAAATCCTCATCACCGGTGGCATATCAGGGCTCAAAgtatggattatctcttttgtggtaggaggaacatgccaggtagccctggg Alignment from Pairagon CTGAGTGTTC-GAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacactattgagattacccaagtctctttaactttttttcccataaagCTGAGTGTCCAGCGAAAAGAACAGGAAGGAAGTATCTGGGGGGCTCCTGAGAGGCATTGTAAGGTATGCAGACGAAATCCTCATCACCGGTGGCATATCAGGGCTCAAAgtatggattatctcttttgtggtaggaggaacatgccaggtagccctggg Alignment from Exonerate_protein2genome CTGAGTGTTCGA-GAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacactattgagattacccaagtctctttaactttttttcccataaagCTGAGTGTCCAGCGAAAAGAACAGGAAGGAAGTATCTGGGGGGCTCCTGAGAGGCATTGTAAGGTATGCAGACGAAATCCTCATCACCGGTGGCATATCAGGGCTCAAAgtatggattatctcttttgtggtaggaggaacatgccaggtagccctggg Alignment from Exonerate_coding2genome CTGAGTGTTCGA-GAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacactattgagattacccaagtctctttaactttttttcccataaagCTGAGTGTCCAGCGAAAAGAACAGGAAGGAAGTATCTGGGGGGCTCCTGAGAGGCATTGTAAGGTATGCAGACGAAATCCTCATCACCGGTGGCATATCAGGGCTCAAAgtatggattatctcttttgtggtaggaggaacatgccaggtagccctggg Alignment from GeneWise AGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGATGAAGTCCTCATCACCGGC---ATATCAGGGCTCAAG acaacactattgagattacccaagtctctttaactttttttcccataaagctgagtgtccagCGAAAAGAACAGGAAGGAAGTATCTGGGGGGCTCCTGAGAGGCATTGTAAGGTATGCAGACGAAATCCTCATCACCGGTGGCATATCAGGGCTCAAAgtatggattatctcttttgtggtaggaggaacatgccaggtagccctggg #### Snx32_ID1073_5 --> 1 - 0 Original Alignment gGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTG-GCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaacgttggcctgcattcattgttctaggGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTCCAACGCCTGCGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCATCTTCTTGGAATATAGCCAGGATgtaagttgattgaatcaacataatgagattaaagaccagctaggggaagt Alignment from CESAR gGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTG-GCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaacgttggcctgcattcattgttctaggGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTCCAACGCCTGCGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCATCTTCTTGGAATATAGCCAGGATgtaagttgattgaatcaacataatgagattaaagaccagctaggggaagt Alignment from Spaln_aa2Genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTG-GCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaacgttggcctgcattcattgttctagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTCCAACGCCTGcGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCATCTTCTTGGAATATAGCCAGGATgtaagttgattgaatcaacataatgagattaaagaccagctaggggaagt Alignment from Spaln_nt2Genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTG-GCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaacgttggcctgcattcattgttctagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTCCAACGCCTGCGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCATCTTCTTGGAATATAGCCAGGATgtaagttgattgaatcaacataatgagattaaagaccagctaggggaagt Alignment from Pairagon GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTG-GCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaacgttggcctgcattcattgttctagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTCCAACGCCTGCGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCATCTTCTTGGAATATAGCCAGGATgtaagttgattgaatcaacataatgagattaaagaccagctaggggaagt Alignment from Exonerate_protein2genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTG-GCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaacgttggcctgcattcattgttctagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTCCAACGCCTGCGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCATCTTCTTGGAATATAGCCAGGATgtaagttgattgaatcaacataatgagattaaagaccagctaggggaagt Alignment from Exonerate_coding2genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTG-GCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaacgttggcctgcattcattgttctagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTCCAACGCCTGCGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCATCTTCTTGGAATATAGCCAGGATgtaagttgattgaatcaacataatgagattaaagaccagctaggggaagt Alignment from GeneWise GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTG-GCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaacgttggcctgcattcattgttctagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTCCAACGCCTGCGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCATCTTCTTGGAATATAGCCAGGATgtaagttgattgaatcaacataatgagattaaagaccagctaggggaagt #### Snx32_ID1074_4 --> 0 - 2 Original Alignment ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAG-CAGGAGCTAGAAgc aagggtggatgtcgtgtcaacccttgggtttattctttatttgcttttagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGTAACAGTTCAATCACCCGGGAAGAGTTCTCTAAGATGAAACCCGGAGCTAGAAgcgtaaggatctccttcagcactcctgatttctctagggtctcctgagagac Alignment from CESAR ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCAG-GAGCTAGAAgc aagggtggatgtcgtgtcaacccttgggtttattctttatttgcttttagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGTAACAGTTCAATCACCCGGGAAGAGTTCTCTAAGATGAAACCCGGAGCTAGAAgcgtaaggatctccttcagcactcctgatttctctagggtctcctgagagac Alignment from Spaln_aa2Genome ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAG-CAGGAGCTAGAAGC aagggtggatgtcgtgtcaacccttgggtttattctttatttgcttttagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGTAACAGTTCAATCACCCGGGAAGAGTTCTCTAAGATGAAAcCCGGAGCTAGAAGCgtaaggatctccttcagcactcctgatttctctagggtctcctgagagac Alignment from Spaln_nt2Genome ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAGCA-GGAGCTAGAAGC aagggtggatgtcgtgtcaacccttgggtttattctttatttgcttttagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGTAACAGTTCAATCACCCGGGAAGAGTTCTCTAAGATGAAACCCGGAGCTAGAAGCgtaaggatctccttcagcactcctgatttctctagggtctcctgagagac Alignment from Pairagon ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAG-CAGGAGCTAGAAGC aagggtggatgtcgtgtcaacccttgggtttattctttatttgcttttagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGTAACAGTTCAATCACCCGGGAAGAGTTCTCTAAGATGAAACCCGGAGCTAGAAGCgtaaggatctccttcagcactcctgatttctctagggtctcctgagagac Alignment from Exonerate_protein2genome ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAG-CAGGAGCTAGAAGC aagggtggatgtcgtgtcaacccttgggtttattctttatttgcttttagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGTAACAGTTCAATCACCCGGGAAGAGTTCTCTAAGATGAAACCCGGAGCTAGAAGCgtaaggatctccttcagcactcctgatttctctagggtctcctgagagac Alignment from Exonerate_coding2genome ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAG-CAGGAGCTAGAAGC aagggtggatgtcgtgtcaacccttgggtttattctttatttgcttttagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGTAACAGTTCAATCACCCGGGAAGAGTTCTCTAAGATGAAACCCGGAGCTAGAAGCgtaaggatctccttcagcactcctgatttctctagggtctcctgagagac Alignment from GeneWise ATTCCCCCAGCCCCTCCCAGGCCAGACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATTCTCCAAGATGAAG-CAGGAGCTAGAAGC aagggtggatgtcgtgtcaacccttgggtttattctttatttgcttttagCTTCCCCCAGCCCCCCCCAGGTCAGACTTTGAGGCTTCAAGGGAAAAGTTGCAAAAGTTGGGTGAGGGTAACAGTTCAATCACCCGGGAAGAGTTCTCTAAGATGAAACCCGGAGCTAGAAGCgtaaggatctccttcagcactcctgatttctctagggtctcctgagagac #### Sptbn2_ID610_5 --> 1 - 2 Original Alignment aTACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCC-ATTGTGCACAAACACcg tccaatccttatatggcaaagcatttactaacctactcctctcttcacagaTACCCCAATGTCAATGTGCATAACTTCACCACCAGCTGGAGAGATGGGCTAGCCTTTAATGCCCATCGTGCACAAACACcggtgtgtgggtggggtccatgacttagatatatgtacacaggcattgtaag Alignment from CESAR aTACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCC-ATTGTGCACAAACACcg tccaatccttatatggcaaagcatttactaacctactcctctcttcacagaTACCCCAATGTCAATGTGCATAACTTCACCACCAGCTGGAGAGATGGGCTAGCCTTTAATGCCCATCGTGCACAAACACcggtgtgtgggtggggtccatgacttagatatatgtacacaggcattgtaag Alignment from Spaln_aa2Genome ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCC-ATTGTGCACAAACACCG tccaatccttatatggcaaagcatttactaacctactcctctcttcacagATACCCCAATGTCAATGTGCATAACTTCACCACCAGCTGGAGAGATGGGCTAGCCTTTAATGCCcATCGTGCACAAACACCGgtgtgtgggtggggtccatgacttagatatatgtacacaggcattgtaag Alignment from Spaln_nt2Genome ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGC-CATTGTGCACAAACACCG tccaatccttatatggcaaagcatttactaacctactcctctcttcacagATACCCCAATGTCAATGTGCATAACTTCACCACCAGCTGGAGAGATGGGCTAGCCTTTAATGCCCATCGTGCACAAACACCGgtgtgtgggtggggtccatgacttagatatatgtacacaggcattgtaag Alignment from Pairagon ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATG-CCATTGTGCACAAACACCG tccaatccttatatggcaaagcatttactaacctactcctctcttcacagATACCCCAATGTCAATGTGCATAACTTCACCACCAGCTGGAGAGATGGGCTAGCCTTTAATGCCCATCGTGCACAAACACCGgtgtgtgggtggggtccatgacttagatatatgtacacaggcattgtaag Alignment from Exonerate_protein2genome ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCC-ATTGTGCACAAACACCG tccaatccttatatggcaaagcatttactaacctactcctctcttcacagATACCCCAATGTCAATGTGCATAACTTCACCACCAGCTGGAGAGATGGGCTAGCCTTTAATGCCCATCGTGCACAAACACCGgtgtgtgggtggggtccatgacttagatatatgtacacaggcattgtaag Alignment from Exonerate_coding2genome ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAATGCC-ATTGTGCACAAACACCG tccaatccttatatggcaaagcatttactaacctactcctctcttcacagATACCCCAATGTCAATGTGCATAACTTCACCACCAGCTGGAGAGATGGGCTAGCCTTTAATGCCCATCGTGCACAAACACCGgtgtgtgggtggggtccatgacttagatatatgtacacaggcattgtaag Alignment from GeneWise ATACCCCAATGTCAATGTGCACAACTTTACCACCAGTTGGAGAGATGGGCTGGCCTTTAAT-GCCATTGTGCACAAACACCG tccaatccttatatggcaaagcatttactaacctactcctctcttcacagATACCCCAATGTCAATGTGCATAACTTCACCACCAGCTGGAGAGATGGGCTAGCCTTTAATGCCCATCGTGCACAAACACCGgtgtgtgggtggggtccatgacttagatatatgtacacaggcattgtaag #### Sptbn2_ID628_23 --> 0 - 2 Original Alignment GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTG-GAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGag ctcttactccaaaagacctgaagttttgtctgagatctaccctcccacagGATGAGCTGAGTGCCCAGGCAGAGGTAAGGAAGCATCAGGTATTGCGAACAAGCCCTTGCTGATTATGCCCAAACCATTAAACAACTATCTGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGaggtaggtgcatgtatgtgacatatagcagagttttgttttgcttttcacag Alignment from CESAR GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTG-GAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGag ctcttactccaaaagacctgaagttttgtctgagatctaccctcccacagGATGAGCTGAGTGCCCAGGCAGAGGTAAGGAAGCATCAGGTATTGCGAACAAGCCCTTGCTGATTATGCCCAAACCATTAAACAACTATCTGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGaggtaggtgcatgtatgtgacatatagcagttaaacttttcttgcatcctag Alignment from Spaln_aa2Genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTG-GAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG ctcttactccaaaagacctgaagttttgtctgagatctaccctcccacagGATGAGCTGAGTGCCCAGGCAGAGGTAAGGAAGCATCAGGTATTGcGAACAAGCCCTTGCTGATTATGCCCAAACCATTAAACAACTATCTGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtaggtgcatgtatgtgacatatagcagagttttgttttgcttttcacag Alignment from Spaln_nt2Genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTG-GAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG ctcttactccaaaagacctgaagttttgtctgagatctaccctcccacagGATGAGCTGAGTGCCCAGGCAGAGGTAAGGAAGCATCAGGTATTGCGAACAAGCCCTTGCTGATTATGCCCAAACCATTAAACAACTATCTGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtaggtgcatgtatgtgacatatagcagagttttgttttgcttttcacag Alignment from Pairagon GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTG-GAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG ctcttactccaaaagacctgaagttttgtctgagatctaccctcccacagGATGAGCTGAGTGCCCAGGCAGAGGTAAGGAAGCATCAGGTATTGCGAACAAGCCCTTGCTGATTATGCCCAAACCATTAAACAACTATCTGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtaggtgcatgtatgtgacatatagcagagttttgttttgcttttcacag Alignment from Exonerate_protein2genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTG-GAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG ctcttactccaaaagacctgaagttttgtctgagatctaccctcccacagGATGAGCTGAGTGCCCAGGCAGAGGTAAGGAAGCATCAGGTATTGCGAACAAGCCCTTGCTGATTATGCCCAAACCATTAAACAACTATCTGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtaggtgcatgtatgtgacatatagcagagttttgttttgcttttcacag Alignment from Exonerate_coding2genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTG-GAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG ctcttactccaaaagacctgaagttttgtctgagatctaccctcccacagGATGAGCTGAGTGCCCAGGCAGAGGTAAGGAAGCATCAGGTATTGCGAACAAGCCCTTGCTGATTATGCCCAAACCATTAAACAACTATCTGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtaggtgcatgtatgtgacatatagcagagttttgttttgcttttcacag Alignment from GeneWise GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTA-TTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAG ctcttactccaaaagacctgaagttttgtctgagatctaccctcccacagGATGAGCTGAGTGCCCAGGCAGAGGTAAGGAAGCATCAGGTATTGCGAACAAGCCCTTGCTGATTATGCCCAAACCATTAAACAACTATCTGCCAGCAGTCAAGATATGATTGACCATGAACATCCAGAGAGgtaggtgcatgtatgtgacatatagcagagttttgttttgcttttcacag #### Sptbn2_ID634_29 --> 2 - 0 Original Alignment ttTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTG-CGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ctgtcaactaacctatgaagtctctataatgttggcttttcttcccacagttTTGGAGGTGCTTGTATTCGGGAAGGACGCAGGGATGGCAGAGGCCTGGCTGTGCAGCCAGGCACCATTGGTGCCGAAGTGCAGAATTGGGTTGCACTGTGGACGAAGTAGAGGCCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCAGCTGTAGCCTGGGAAGAGCGTTTTAGTGCATTGGATAAGCTCACTGCAgtatgagctgcagtaacccagaggctcccaaccctgtcactgccattcta Alignment from CESAR ttTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTG-CGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ctgtcaactaacctatgaagtctctataatgttggcttttcttcccacagttTTGGAGGTGCTTGTATTCGGGAAGGACGCAGGGATGGCAGAGGCCTGGCTGTGCAGCCAGGCACCATTGGTGCCGAAGTGCAGAATTGGGTTGCACTGTGGACGAAGTAGAGGCCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCAGCTGTAGCCTGGGAAGAGCGTTTTAGTGCATTGGATAAGCTCACTGCAgtatgagctgcagtaacccagaggctcccaaccctgtcactgccattcta Alignment from Spaln_aa2Genome TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTG-CGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ctgtcaactaacctatgaagtctctataatgttggcttttcttcccacagTTTTGGAGGTGCTTGTATTCGGGAAGGACGCAGGGATGGCAGAGGCCTGGCTGTGCAGCCAGGCACCATTGGTGcCGAAGTGCAGAATTGGGTTGCACTGTGGACGAAGTAGAGGCCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCAGCTGTAGCCTGGGAAGAGCGTTTTAGTGCATTGGATAAGCTCACTGCAgtatgagctgcagtaacccagaggctcccaaccctgtcactgccattcta Alignment from Spaln_nt2Genome TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTG-CGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ctgtcaactaacctatgaagtctctataatgttggcttttcttcccacagTTTTGGAGGTGCTTGTATTCGGGAAGGACGCAGGGATGGCAGAGGCCTGGCTGTGCAGCCAGGCACCATTGGTGCCGAAGTGCAGAATTGGGTTGCACTGTGGACGAAGTAGAGGCCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCAGCTGTAGCCTGGGAAGAGCGTTTTAGTGCATTGGATAAGCTCACTGCAgtatgagctgcagtaacccagaggctcccaaccctgtcactgccattcta Alignment from Pairagon TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTG-CGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ctgtcaactaacctatgaagtctctataatgttggcttttcttcccacagTTTTGGAGGTGCTTGTATTCGGGAAGGACGCAGGGATGGCAGAGGCCTGGCTGTGCAGCCAGGCACCATTGGTGCCGAAGTGCAGAATTGGGTTGCACTGTGGACGAAGTAGAGGCCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCAGCTGTAGCCTGGGAAGAGCGTTTTAGTGCATTGGATAAGCTCACTGCAgtatgagctgcagtaacccagaggctcccaaccctgtcactgccattcta Alignment from Exonerate_protein2genome TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTG-CGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ctgtcaactaacctatgaagtctctataatgttggcttttcttcccacagTTTTGGAGGTGCTTGTATTCGGGAAGGACGCAGGGATGGCAGAGGCCTGGCTGTGCAGCCAGGCACCATTGGTGCCGAAGTGCAGAATTGGGTTGCACTGTGGACGAAGTAGAGGCCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCAGCTGTAGCCTGGGAAGAGCGTTTTAGTGCATTGGATAAGCTCACTGCAgtatgagctgcagtaacccagaggctcccaaccctgtcactgccattcta Alignment from Exonerate_coding2genome TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTG-CGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ctgtcaactaacctatgaagtctctataatgttggcttttcttcccacagTTTTGGAGGTGCTTGTATTCGGGAAGGACGCAGGGATGGCAGAGGCCTGGCTGTGCAGCCAGGCACCATTGGTGCCGAAGTGCAGAATTGGGTTGCACTGTGGACGAAGTAGAGGCCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCAGCTGTAGCCTGGGAAGAGCGTTTTAGTGCATTGGATAAGCTCACTGCAgtatgagctgcagtaacccagaggctcccaaccctgtcactgccattcta Alignment from GeneWise TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTG-GTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ctgtcaactaacctatgaagtctctataatgttggcttttcttcccacagTTTTGGAGGTGCTTGTATTCGGGAAGGACGCAGGGATGGCAGAGGCCTGGCTGTGCAGCCAGGCACCATTGGTGCCGAAGTGCAGAATTGGGTTGCACTGTGGACGAAGTAGAGGCCCTCATCAAGCGGCATGAAGCCTATCAGAAGTCAGCTGTAGCCTGGGAAGAGCGTTTTAGTGCATTGGATAAGCTCACTGCAgtatgagctgcagtaacccagaggctcccaaccctgtcactgccattcta #### Sptbn2_ID635_30 --> 0 - 2 Original Alignment CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACT-TCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATgg gtttttcaactctcactgcttcccgctctccccccccccccttgtttcagCTGGAAGAGAGGGAAAATGAACGAAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTCTCAGAGCCCATGGCTAGTCAGCCAGAGGGGAGTCTAGTGGATGGCCAAAGAGTTCCTGACACTGCTTGGGATgggtaaacattgatatcaaatgctaacactggtaaatgacccttgtctctcc Alignment from CESAR CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACT-TCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATgg gtttttcaactctcactgcttcccgctctccccccccccccttgtttcagCTGGAAGAGAGGGAAAATGAACGAAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTCTCAGAGCCCATGGCTAGTCAGCCAGAGGGGAGTCTAGTGGATGGCCAAAGAGTTCCTGACACTGCTTGGGATgggtaaacattgatatcaaatgctaacactggtaaatgaccctttagcatct Alignment from Spaln_aa2Genome CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACT-TCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG gtttttcaactctcactgcttcccgctctccccccccccccttgtttcagCTGGAAGAGAGGGAAAATGAACGAAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTcTCAGAGCCCATGGCTAGTCAGCCAGAGGGGAGTCTAGTGGATGGCCAAAGAGTTCCTGACACTGCTTGGGATGGgtaaacattgatatcaaatgctaacactggtaaatgacccttgtctctcc Alignment from Spaln_nt2Genome CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACT-TCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG gtttttcaactctcactgcttcccgctctccccccccccccttgtttcagCTGGAAGAGAGGGAAAATGAACGAAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTCTCAGAGCCCATGGCTAGTCAGCCAGAGGGGAGTCTAGTGGATGGCCAAAGAGTTCCTGACACTGCTTGGGATGGgtaaacattgatatcaaatgctaacactggtaaatgacccttgtctctcc Alignment from Pairagon CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACT-TCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG gtttttcaactctcactgcttcccgctctccccccccccccttgtttcagCTGGAAGAGAGGGAAAATGAACGAAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTCTCAGAGCCCATGGCTAGTCAGCCAGAGGGGAGTCTAGTGGATGGCCAAAGAGTTCCTGACACTGCTTGGGATGGgtaaacattgatatcaaatgctaacactggtaaatgacccttgtctctcc Alignment from Exonerate_protein2genome CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACT-TCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG gtttttcaactctcactgcttcccgctctccccccccccccttgtttcagCTGGAAGAGAGGGAAAATGAACGAAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTCTCAGAGCCCATGGCTAGTCAGCCAGAGGGGAGTCTAGTGGATGGCCAAAGAGTTCCTGACACTGCTTGGGATGGgtaaacattgatatcaaatgctaacactggtaaatgacccttgtctctcc Alignment from Exonerate_coding2genome CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACT-TCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG gtttttcaactctcactgcttcccgctctccccccccccccttgtttcagCTGGAAGAGAGGGAAAATGAACGAAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTCTCAGAGCCCATGGCTAGTCAGCCAGAGGGGAGTCTAGTGGATGGCCAAAGAGTTCCTGACACTGCTTGGGATGGgtaaacattgatatcaaatgctaacactggtaaatgacccttgtctctcc Alignment from GeneWise CTGGAAGAGCGGGAAAATGAGCGGAAAAGGAAGAGGGAGGAGGAGGAACGGAGGAAACAGCCTCCTACT-TCAGAGCCCATGGCTAGTCAGCCAGAAGGGAGTCTGGTAGATGGCCAGAGAGTTCCTGACACTGCCTGGGATGG gtttttcaactctcactgcttcccgctctccccccccccccttgtttcagCTGGAAGAGAGGGAAAATGAACGAAAAAGGAAGAGGGAGGGGGAGGAACAGAGGAAACAACCTCCCACTCTCAGAGCCCATGGCTAGTCAGCCAGAGGGGAGTCTAGTGGATGGCCAAAGAGTTCCTGACACTGCTTGGGATGGgtaaacattgatatcaaatgctaacactggtaaatgacccttgtctctcc #### Sptbn2_ID637_32 --> 0 - 0 Original Alignment CCCCTGTTGGAACAGCAGAGA-CTTGAACAGAGCAATGTCCCCGAAGGACCT ccttgaaactcagccaccatttggatctaaatcacttttctaaatcatagCCCCTGTTGGAACAGCAGAGACCTTGAACAGGGCAATGTGCCTGAGGGACCTgtaagattagctaagggcttaagtatggatatcaaaagatgatgatgcaa Alignment from CESAR CCCCTGTTGGAACAGCAGAGA-CTTGAACAGAGCAATGTCCCCGAAGGACCT ccttgaaactcagccaccatttggatctaaatcacttttctaaatcatagCCCCTGTTGGAACAGCAGAGACCTTGAACAGGGCAATGTGCCTGAGGGACCTgtaagattagctaagggcttaagtatggatatcaaaagatgatgatgcaa Alignment from Spaln_aa2Genome CCCCTGTTGGAACAGCAGAGA-CTTGAACAGAGCAATGTCCCCGAAGGACCT ccttgaaactcagccaccatttggatctaaatcacttttctaaatcatagCCCCTGTTGGAACAGCAGAGAcCTTGAACAGGGCAATGTGCCTGAGGGACCTgtaagattagctaagggcttaagtatggatatcaaaagatgatgatgcaa Alignment from Spaln_nt2Genome CCCCTGTTGGAACAGCAGAGAC-TTGAACAGAGCAATGTCCCCGAAGGACCT ccttgaaactcagccaccatttggatctaaatcacttttctaaatcatagCCCCTGTTGGAACAGCAGAGACCTTGAACAGGGCAATGTGCCTGAGGGACCTgtaagattagctaagggcttaagtatggatatcaaaagatgatgatgcaa Alignment from Pairagon CCCCTGTTGGAACAGCAGAGA-CTTGAACAGAGCAATGTCCCCGAAGGACCT ccttgaaactcagccaccatttggatctaaatcacttttctaaatcatagCCCCTGTTGGAACAGCAGAGACCTTGAACAGGGCAATGTGCCTGAGGGACCTgtaagattagctaagggcttaagtatggatatcaaaagatgatgatgcaa Alignment from Exonerate_protein2genome CCCCTGTTGGAACAGCAGAGA-CTTGAACAGAGCAATGTCCCCGAAGGACCT ccttgaaactcagccaccatttggatctaaatcacttttctaaatcatagCCCCTGTTGGAACAGCAGAGACCTTGAACAGGGCAATGTGCCTGAGGGACCTgtaagattagctaagggcttaagtatggatatcaaaagatgatgatgcaa Alignment from Exonerate_coding2genome CCCCTGTTGGAACAGCAGAGA-CTTGAACAGAGCAATGTCCCCGAAGGACCT ccttgaaactcagccaccatttggatctaaatcacttttctaaatcatagCCCCTGTTGGAACAGCAGAGACCTTGAACAGGGCAATGTGCCTGAGGGACCTgtaagattagctaagggcttaagtatggatatcaaaagatgatgatgcaa Alignment from GeneWise CCCCTGTTGGAACAGCAGAGA-CTTGAACAGAGCAATGTCCCCGAAGGACCT ccttgaaactcagccaccatttggatctaaatcacttttctaaatcatagCCCCTGTTGGAACAGCAGAGACCTTGAACAGGGCAATGTGCCTGAGGGACCTgtaagattagctaagggcttaagtatggatatcaaaagatgatgatgcaa #### Sptbn2_ID638_33 --> 0 - 2 Original Alignment GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTG---CCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATG-GAAGCCTTCAACAAGAAAGCTGCCAACag aagaaggatacaattgatgtcattgtttacatgtttctggccccttgcagGGCTCTGGTATGGGAGATGAGTCCCGTGGGCCCCAGGGTGAGAGACAGACCCTGCTGCCACGTGGCCCTGCTCCTTCTCCTATGCCACAAAGTAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGAGGTCCGGAGCTCTCTGCACAGGAACAGATGGAAGGGATGCTGTGCCGTGAACAAGACATGCGAAGCGTTCAACAAGAAAGCTGCCAATaggtgagcatcatgcctactgatgcctttgcctctctaaccctggcctctga Alignment from CESAR GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTG---CCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATG-GAAGCCTTCAACAAGAAAGCTGCCAACag aagaaggatacaattgatgtcattgtttacatgtttctggccccttgcagGGCTCTGGTATGGGAGATGAGTCCCGTGGGCCCCAGGGTGAGAGACAGACCCTGCTGCCACGTGGCCCTGCTCCTTCTCCTATGCCACAAAGTAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGAGGTCCGGAGCTCTCTGCACAGGAACAGATGGAAGGGATGCTGTGCCGTGAACAAGACATGCGAAGCGTTCAACAAGAAAGCTGCCAATaggtgagcatcatgcctactgatgcctttgcctctctaaccctggcctctga Alignment from Spaln_aa2Genome GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACC---CTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATG-GAAGCCTTCAACAAGAAAGCTGCCAACAG aagaaggatacaattgatgtcattgtttacatgtttctggccccttgcagGGCTCTGGTATGGGAGATGAGTCCCGTGGGCCCCAGGGTGAGAGACAGACCCTGCTGCCACGTGGCCCTGCTCCTTCTCCTATGCCACAAAGTAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGAGGTCCGGAGCTCTCTGCACAGGAACAGATGGAAGGGATGCTGTGCCGTGAACAAGACATGcGAAGCGTTCAACAAGAAAGCTGCCAATAGgtgagcatcatgcctactgatgcctttgcctctctaaccctggcctctga Alignment from Spaln_nt2Genome GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTGC---CCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATG-GAAGCCTTCAACAAGAAAGCTGCCAACAG aagaaggatacaattgatgtcattgtttacatgtttctggccccttgcagGGCTCTGGTATGGGAGATGAGTCCCGTGGGCCCCAGGGTGAGAGACAGACCCTGCTGCCACGTGGCCCTGCTCCTTCTCCTATGCCACAAAGTAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGAGGTCCGGAGCTCTCTGCACAGGAACAGATGGAAGGGATGCTGTGCCGTGAACAAGACATGCGAAGCGTTCAACAAGAAAGCTGCCAATAGgtgagcatcatgcctactgatgcctttgcctctctaaccctggcctctga Alignment from Pairagon GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACC---CTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATG-GAAGCCTTCAACAAGAAAGCTGCCAACAG aagaaggatacaattgatgtcattgtttacatgtttctggccccttgcagGGCTCTGGTATGGGAGATGAGTCCCGTGGGCCCCAGGGTGAGAGACAGACCCTGCTGCCACGTGGCCCTGCTCCTTCTCCTATGCCACAAAGTAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGAGGTCCGGAGCTCTCTGCACAGGAACAGATGGAAGGGATGCTGTGCCGTGAACAAGACATGCGAAGCGTTCAACAAGAAAGCTGCCAATAGgtgagcatcatgcctactgatgcctttgcctctctaaccctggcctctga Alignment from Exonerate_protein2genome GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACC---CTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATG-GAAGCCTTCAACAAGAAAGCTGCCAACAG aagaaggatacaattgatgtcattgtttacatgtttctggccccttgcagGGCTCTGGTATGGGAGATGAGTCCCGTGGGCCCCAGGGTGAGAGACAGACCCTGCTGCCACGTGGCCCTGCTCCTTCTCCTATGCCACAAAGTAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGAGGTCCGGAGCTCTCTGCACAGGAACAGATGGAAGGGATGCTGTGCCGTGAACAAGACATGCGAAGCGTTCAACAAGAAAGCTGCCAATAGgtgagcatcatgcctactgatgcctttgcctctctaaccctggcctctga Alignment from Exonerate_coding2genome GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACC---CTGCCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATG-GAAGCCTTCAACAAGAAAGCTGCCAACAG aagaaggatacaattgatgtcattgtttacatgtttctggccccttgcagGGCTCTGGTATGGGAGATGAGTCCCGTGGGCCCCAGGGTGAGAGACAGACCCTGCTGCCACGTGGCCCTGCTCCTTCTCCTATGCCACAAAGTAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGAGGTCCGGAGCTCTCTGCACAGGAACAGATGGAAGGGATGCTGTGCCGTGAACAAGACATGCGAAGCGTTCAACAAGAAAGCTGCCAATAGgtgagcatcatgcctactgatgcctttgcctctctaaccctggcctctga Alignment from GeneWise GGATCTGGCACAGGAGACGAGTCCAGTGGGCCCCGGGGAGAGAGGCAGACCCTG---CCCCGGGGCCCTGCTCCTTCTCCAATGCCCCAGAGCAGATCATCTGAAGCAGCTCATGGTGCCACCCTGCCCACACGAGGACCTGAGCTCTCTGCTCAGGAACAGATGGAAGGGATGCTGTGCCGCAAACAAGAGATG-GAAGCCTTCAACAAGAAAGCTGCCAACAG aagaaggatacaattgatgtcattgtttacatgtttctggccccttgcagGGCTCTGGTATGGGAGATGAGTCCCGTGGGCCCCAGGGTGAGAGACAGACCCTGCTGCCACGTGGCCCTGCTCCTTCTCCTATGCCACAAAGTAGATCATCAGAAGCAGCTCATGGTGCCACCTTACCTACACGAGGTCCGGAGCTCTCTGCACAGGAACAGATGGAAGGGATGCTGTGCCGTGAACAAGACATGCGAAGCGTTCAACAAGAAAGCTGCCAATAGgtgagcatcatgcctactgatgcctttgcctctctaaccctggcctctga #### Ssh3_ID445_11 --> 1 - 2 Original Alignment aGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAAC-TTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCag tgagagagtcattggtggttccctattgtggaagtttccttttgccccagaGTAAGTCACATCTTGAACATGGCCCAGGAGATTGACAACCTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAAAAATCGGCACAGCTTTTGCCTCACTGGAAGGAGACACATCGATTTATTGAGGATGCCaggtaggcctgctccccaggtttgatgccccatccactagtatagactggga Alignment from CESAR aGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAAC-TTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCag tgagagagtcattggtggttccctattgtggaagtttccttttgccccagaGTAAGTCACATCTTGAACATGGCCCAGGAGATTGACAACCTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAAAAATCGGCACAGCTTTTGCCTCACTGGAAGGAGACACATCGATTTATTGAGGATGCCaggtaggcctgctccccaggtttgatgccccatccactagtatagactggga Alignment from Spaln_aa2Genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAAC-TTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG tgagagagtcattggtggttccctattgtggaagtttccttttgccccagAGTAAGTCACATCTTGAACATGGCCCAGGAGATTGACAACcTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAAAAATCGGCACAGCTTTTGCCTCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtaggcctgctccccaggtttgatgccccatccactagtatagactggga Alignment from Spaln_nt2Genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAA-CTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG tgagagagtcattggtggttccctattgtggaagtttccttttgccccagAGTAAGTCACATCTTGAACATGGCCCAGGAGATTGACAACCTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAAAAATCGGCACAGCTTTTGCCTCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtaggcctgctccccaggtttgatgccccatccactagtatagactggga Alignment from Pairagon AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAA-CTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG tgagagagtcattggtggttccctattgtggaagtttccttttgccccagAGTAAGTCACATCTTGAACATGGCCCAGGAGATTGACAACCTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAAAAATCGGCACAGCTTTTGCCTCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtaggcctgctccccaggtttgatgccccatccactagtatagactggga Alignment from Exonerate_protein2genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAAC-TTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG tgagagagtcattggtggttccctattgtggaagtttccttttgccccagAGTAAGTCACATCTTGAACATGGCCCAGGAGATTGACAACCTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAAAAATCGGCACAGCTTTTGCCTCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtaggcctgctccccaggtttgatgccccatccactagtatagactggga Alignment from Exonerate_coding2genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAAC-TTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG tgagagagtcattggtggttccctattgtggaagtttccttttgccccagAGTAAGTCACATCTTGAACATGGCCCAGGAGATTGACAACCTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAAAAATCGGCACAGCTTTTGCCTCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtaggcctgctccccaggtttgatgccccatccactagtatagactggga Alignment from GeneWise AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGAC-AACTTCTTCCCTGAGCGCTTCACCTATTACAATGTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG tgagagagtcattggtggttccctattgtggaagtttccttttgccccagAGTAAGTCACATCTTGAACATGGCCCAGGAGATTGACAACCTTCTTCCCTGAGCGTTTTACCTATTACAATGTACGTGTCTGGGATGAAAAATCGGCACAGCTTTTGCCTCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtaggcctgctccccaggtttgatgccccatccactagtatagactggga #### Ssh3_ID446_10 --> 0 - 2 Original Alignment CCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAAC-CTGGAGGAACTTCAGAAAAACag CACACCTCTACTTGgtatgtggtcctttgaccatgcaatttttcaaacagGGCTCTGAATGGAATGCTGCCAACCCTAGAGGAACTTCAAAAGAACaggtgtgttttctggctgtgagtgcctctttttccttccagcttcccagcct Alignment from CESAR CCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAAC-CTGGAGGAACTTCAGAAAAACag CACACCTCTACTTGgtaagcggtcctttgaccatgcaatttttcaaacagGGCTCTGAATGGAATGCTGCCAACCCTAGAGGAACTTCAAAAGAACaggtgtgttttctggctgtgagtgcctctttttccttccagcttcccagcct Alignment from Spaln_aa2Genome CCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAAC-CTGGAGGAACTTCAGAAAAACAG CACACCTCTACTTGgtatgtggtcctttgaccatgcaatttttcaaacagGGCTCTGAATGGAATGCTGCCAACcCTAGAGGAACTTCAAAAGAACAGgtgtgttttctggctgtgagtgcctctttttccttccagcttcccagcct Alignment from Spaln_nt2Genome CCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAACC-TGGAGGAACTTCAGAAAAACAG CACACCTCTACTTGgtatgtggtcctttgaccatgcaatttttcaaacagGGCTCTGAATGGAATGCTGCCAACCCTAGAGGAACTTCAAAAGAACAGgtgtgttttctggctgtgagtgcctctttttccttccagcttcccagcct Alignment from Pairagon CCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAA-CCTGGAGGAACTTCAGAAAAACAG CACACCTCTACTTGgtatgtggtcctttgaccatgcaatttttcaaacagGGCTCTGAATGGAATGCTGCCAACCCTAGAGGAACTTCAAAAGAACAGgtgtgttttctggctgtgagtgcctctttttccttccagcttcccagcct Alignment from Exonerate_protein2genome CCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAAC-CTGGAGGAACTTCAGAAAAACAG CACACCTCTACTTGgtatgtggtcctttgaccatgcaatttttcaaacagGGCTCTGAATGGAATGCTGCCAACCCTAGAGGAACTTCAAAAGAACAGgtgtgttttctggctgtgagtgcctctttttccttccagcttcccagcct Alignment from Exonerate_coding2genome CCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCCAAC-CTGGAGGAACTTCAGAAAAACAG CACACCTCTACTTGgtatgtggtcctttgaccatgcaatttttcaaacagGGCTCTGAATGGAATGCTGCCAACCCTAGAGGAACTTCAAAAGAACAGgtgtgttttctggctgtgagtgcctctttttccttccagcttcccagcct Alignment from GeneWise CCCACCTCTACTTG------------------------------------GGCTCTGAGTGGAATGCTGCCAACCTGGAGGAACTTCAGAAAAACAGA-- CACACCTCTACTTGGTATGTGGTCCTTTGACCATGCAATTTTTCAAACAGGGCTCTGAATGGAATGCTGCCAACCCTAGAGGAACTTCAAAAGAACAGGTgtgttttctggctgtgagtgcctctttttccttccagcttcccagcct #### Ssh3_ID447_9 --> 0 - 0 Original Alignment ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATC-TTCCCCCACCTCTACTTG GGCTCTGAGTGGAA acaggtcatggtaggccagttctctacctaagcctgggtttttattgcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTCTA------TACCGTGACTTTATTGACAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCAGACATCTCGCATCCTACCCACACCTCTACTTGgtaagcggtcctttggtgttgttctttgacctacagGGCTCTGAATGGAA Alignment from CESAR ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATC-TTCCCCCACCTCTACTTG GGCTCTGAGTGGAA acaggtcatggtaggccagttctctacctaagcctgggtttttattgcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTCTA------TACCGTGACTTTATTGACAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCAGACATCTCGCATCCTACCCACACCTCTACTTGgtaagcggtcctttgaccatgcaatttttcaaacagGGCTCTGAATGGAA Alignment from Spaln_aa2Genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATC-TTCCCCCACCTCTACTTG GGCTCTGAGTGGAA acaggtcatggtaggccagttctctacctaagcctgggtttttattgcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTCTA------TACCGTGACTTTATTGACAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCAGACATCTCGCATCcTACCCACACCTCTACTTGgtaagcggtcctttggtgttgttctttgacctacagGGCTCTGAATGGAA Alignment from Spaln_nt2Genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCC-CACCTCTACTTG GGCTCTGAGTGGAA acaggtcatggtaggccagttctctacctaagcctgggtttttattgcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTCT------ATACCGTGACTTTATTGACAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCAGACATCTCGCATCCTACCCACACCTCTACTTGgtaagcggtcctttggtgttgttctttgacctacagGGCTCTGAATGGAA Alignment from Pairagon ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTT-CCCCCACCTCTACTTG GGCTCTGAGTGGAA acaggtcatggtaggccagttctctacctaagcctgggtttttattgcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTCT------ATACCGTGACTTTATTGACAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCAGACATCTCGCATCCTACCCACACCTCTACTTGgtaagcggtcctttggtgttgttctttgacctacagGGCTCTGAATGGAA Alignment from Exonerate_protein2genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATC-TTCCCCCACCTCTACTTG GGCTCTGAGTGGAA acaggtcatggtaggccagttctctacctaagcctgggtttttattgcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTCTA------TACCGTGACTTTATTGACAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCAGACATCTCGCATCCTACCCACACCTCTACTTGgtaagcggtcctttggtgttgttctttgacctacagGGCTCTGAATGGAA Alignment from Exonerate_coding2genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATC-TTCCCCCACCTCTACTTG GGCTCTGAGTGGAA acaggtcatggtaggccagttctctacctaagcctgggtttttattgcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTCTA------TACCGTGACTTTATTGACAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCAGACATCTCGCATCCTACCCACACCTCTACTTGgtaagcggtcctttggtgttgttctttgacctacagGGCTCTGAATGGAA Alignment from GeneWise ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATC-TTCCCCCACCTCTACTTG------------------------------------GGCTCTGAGTGGAA acaggtcatggtaggccagttctctacctaagcctgggtttttattgcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTCTA------TACCGTGACTTTATTGACAACCAGATGCTGCTTCTCATGGCCCAGCAAGATCAGACATCTCGCATCCTACCCACACCTCTACTTGGTAAGCGGTCCTTTGGTGTTGTTCTTTGACCTACAGGGCTCTGAATGGAA #### Ssh3_ID449_7 --> 1 - 2 Original Alignment gGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGT-GGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGAca caagtttgatggagtgattggggtgatgacagcatgctaatctcttacaggGCCACATTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTCGGCCTTGTGCCTGGTGGCAGCGCTCTTGCATGGGCTACTTACTACCAGGTGAAACTTAACTCTGATCAGGGCTGCCTCAATGAATGGATGGCGATGTCTGACCTGGAGTCATTTCGACCACCCAATGCTGAGCCCGCAcagtaaggggacgggatgaagcagagaaataaggaggaaggtgtttgctgct Alignment from CESAR gGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGT-GGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGAca caagtttgatggagtgattggggtgatgacagcatgctaatctcttacaggGCCACATTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTCGGCCTTGTGCCTGGTGGCAGCGCTCTTGCATGGGCTACTTACTACCAGGTGAAACTTAACTCTGATCAGGGCTGCCTCAATGAATGGATGGCGATGTCTGACCTGGAGTCATTTCGACCACCCAATGCTGAGCCCGCAcagtaaggggacgggatgaagcagagaaataaggaggaaggtgtttgctgct Alignment from Spaln_aa2Genome GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGT-GGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA caagtttgatggagtgattggggtgatgacagcatgctaatctcttacagGGCCACATTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTcGGCCTTGTGCCTGGTGGCAGCGCTCTTGCATGGGCTACTTACTACCAGGTGAAACTTAACTCTGATCAGGGCTGCCTCAATGAATGGATGGCGATGTCTGACCTGGAGTCATTTCGACCACCCAATGCTGAGCCCGCACAgtaaggggacgggatgaagcagagaaataaggaggaaggtgtttgctgct Alignment from Spaln_nt2Genome GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGT-GGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA caagtttgatggagtgattggggtgatgacagcatgctaatctcttacagGGCCACATTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTCGGCCTTGTGCCTGGTGGCAGCGCTCTTGCATGGGCTACTTACTACCAGGTGAAACTTAACTCTGATCAGGGCTGCCTCAATGAATGGATGGCGATGTCTGACCTGGAGTCATTTCGACCACCCAATGCTGAGCCCGCACAgtaaggggacgggatgaagcagagaaataaggaggaaggtgtttgctgct Alignment from Pairagon GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGT-GGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA caagtttgatggagtgattggggtgatgacagcatgctaatctcttacagGGCCACATTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTCGGCCTTGTGCCTGGTGGCAGCGCTCTTGCATGGGCTACTTACTACCAGGTGAAACTTAACTCTGATCAGGGCTGCCTCAATGAATGGATGGCGATGTCTGACCTGGAGTCATTTCGACCACCCAATGCTGAGCCCGCACAgtaaggggacgggatgaagcagagaaataaggaggaaggtgtttgctgct Alignment from Exonerate_protein2genome GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGT-GGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA caagtttgatggagtgattggggtgatgacagcatgctaatctcttacagGGCCACATTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTCGGCCTTGTGCCTGGTGGCAGCGCTCTTGCATGGGCTACTTACTACCAGGTGAAACTTAACTCTGATCAGGGCTGCCTCAATGAATGGATGGCGATGTCTGACCTGGAGTCATTTCGACCACCCAATGCTGAGCCCGCACAgtaaggggacgggatgaagcagagaaataaggaggaaggtgtttgctgct Alignment from Exonerate_coding2genome GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGCAGT-GGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA caagtttgatggagtgattggggtgatgacagcatgctaatctcttacagGGCCACATTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTCGGCCTTGTGCCTGGTGGCAGCGCTCTTGCATGGGCTACTTACTACCAGGTGAAACTTAACTCTGATCAGGGCTGCCTCAATGAATGGATGGCGATGTCTGACCTGGAGTCATTTCGACCACCCAATGCTGAGCCCGCACAgtaaggggacgggatgaagcagagaaataaggaggaaggtgtttgctgct Alignment from GeneWise GGCCACACTGCAGGTATTGCACCAGGCATGTGAGGTAGCTCTAGGC-AGTGGCCTTGTGCCTGGTGGCAGTGCCCTTGCCTGGGCTACTTACTACCAGGAGAAACTCAACTCTGACCAGGGTTGCCTCAATGAGTGGATGGCCATGTCTGACCTGGAGTCCTTTCGACCACCTAATGCTGAGCCTGGACA caagtttgatggagtgattggggtgatgacagcatgctaatctcttacagGGCCACATTGCAAGTATTGCACCAGGCATGTGAGGTAGCTCTTGGTAGTCGGCCTTGTGCCTGGTGGCAGCGCTCTTGCATGGGCTACTTACTACCAGGTGAAACTTAACTCTGATCAGGGCTGCCTCAATGAATGGATGGCGATGTCTGACCTGGAGTCATTTCGACCACCCAATGCTGAGCCCGCACAgtaaggggacgggatgaagcagagaaataaggaggaaggtgtttgctgct #### Ssh3_ID450_6 --> 1 - 2 Original Alignment gGGCTTCAGTGTG-ACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGtg tgctgctaatcacctggtatcggggtctgcatattctcttgtctcttcagcGGCTTAAGTGTGCACGTCTGGTGGCCAAAGCCGAATCTTCAAGCCTCTCTCTATCCAGACCATGtggtgagtggtgcacagctataaggtttaccagcacacttggttgacagcct Alignment from CESAR gGGCTTCAGTGTG-ACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGtg tgctgctaatcacctggtatcggggtctgcatattctcttgtctcttcagcGGCTTAAGTGTGCACGTCTGGTGGCCAAAGCCGAATCTTCAAGCCTCTCTCTATCCAGACCATGtggtgagtggtgcacagctataaggtttaccagcacacttggttgacagcct Alignment from Spaln_aa2Genome GGGCTTCAGTGTG-ACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG tgctgctaatcacctggtatcggggtctgcatattctcttgtctcttcagCGGCTTAAGTGTGcACGTCTGGTGGCCAAAGCCGAATCTTCAAGCCTCTCTCTATCCAGACCATGTGgtgagtggtgcacagctataaggtttaccagcacacttggttgacagcct Alignment from Spaln_nt2Genome GGGCTTCAGTGTG-ACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG tgctgctaatcacctggtatcggggtctgcatattctcttgtctcttcagCGGCTTAAGTGTGCACGTCTGGTGGCCAAAGCCGAATCTTCAAGCCTCTCTCTATCCAGACCATGTGgtgagtggtgcacagctataaggtttaccagcacacttggttgacagcct Alignment from Pairagon GGGCTTCAGTGTG-ACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG tgctgctaatcacctggtatcggggtctgcatattctcttgtctcttcagCGGCTTAAGTGTGCACGTCTGGTGGCCAAAGCCGAATCTTCAAGCCTCTCTCTATCCAGACCATGTGgtgagtggtgcacagctataaggtttaccagcacacttggttgacagcct Alignment from Exonerate_protein2genome GGGCTTCAGTGTG-ACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG tgctgctaatcacctggtatcggggtctgcatattctcttgtctcttcagCGGCTTAAGTGTGCACGTCTGGTGGCCAAAGCCGAATCTTCAAGCCTCTCTCTATCCAGACCATGTGgtgagtggtgcacagctataaggtttaccagcacacttggttgacagcct Alignment from Exonerate_coding2genome GGGCTTCAGTGTG-ACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG tgctgctaatcacctggtatcggggtctgcatattctcttgtctcttcagCGGCTTAAGTGTGCACGTCTGGTGGCCAAAGCCGAATCTTCAAGCCTCTCTCTATCCAGACCATGTGgtgagtggtgcacagctataaggtttaccagcacacttggttgacagcct Alignment from GeneWise GGGCTTCAGT-GTGACATCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG tgctgctaatcacctggtatcggggtctgcatattctcttgtctcttcagCGGCTTAAGTGTGCACGTCTGGTGGCCAAAGCCGAATCTTCAAGCCTCTCTCTATCCAGACCATGTGgtgagtggtgcacagctataaggtttaccagcacacttggttgacagcct #### Stip1_ID1988_13 --> 0 - 2 Original Alignment GAAGCAGCAGATGGTTACCAACGC-TGTATGATGGCACAGTACAACAGACATGATAGCCCT------------GAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCga aaacacatatgtagtattgatgtgctccttcggtgttatttttcttttagGAAGCAGCAGACGGATACCGACGTCTGCATGATGGCACAGTACAACAGACATGACAGCCCACATGACAGCCCTGAGGAAGTGACA------------------CCCGAGGTTCAGCAAATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAAGACCCCCAGGCTTTGAGTgagtaaaataaacgggagagaggaaatgggagagaaaattttattttcattc Alignment from CESAR GAAGCAGCAGATGGTTACCAACGC-TGTATGATGGCACAGTACAACAGACATGATAGC------------CCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCga aaacacatatgtagtattgatgtgctccttcggtgttatttttcttttagGAAGCAGCAGACGGATACCGACGTCTGCATGATGGCACAGTACAACAGACATGACAGCCCACATGACAGCCCTGAGGAAGTGACA------------------CCCGAGGTTCAGCAAATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAAGACCCCCAGGCTTTGAGTgagtaaaataaacgggagagaggaaatgggagagaaaattttattttcattc Alignment from Spaln_aa2Genome GAAGCAGCAGATGGTTACCAACGC-TGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA aaacacatatgtagtattgatgtgctccttcggtgttatttttcttttagGAAGCAGCAGACGGATACCGACGTcTGCATGATGGCACAGTACAACAGACATGACAGCCCACATGACAGCCCTGAGGAAGTGACA------CCCGAGGTTCAGCAAATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAAGACCCCCAGGCTTTGAGTGAgtaaaataaacgggagagaggaaatgggagagaaaattttattttcattc Alignment from Spaln_nt2Genome GAAGCAGCAGATGGTTACCAACG-CTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGAC-CCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA aaacacatatgtagtattgatgtgctccttcggtgttatttttcttttagGAAGCAGCAGACGGATACCGACGTCTGCATGATGGCACAGTACAACAGACATGACAGCCCACATGA----CAGCCCTGAGGAA---GTGACACCCGAGGTTCAGCAAATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAAGACCCCCAGGCTTTGAGTGAgtaaaataaacgggagagaggaaatgggagagaaaattttattttcattc Alignment from Pairagon GAAGCAGCAGATGGTTACCAACG-CTGTATGATGGCACAGTACAACAG------------ACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA aaacacatatgtagtattgatgtgctccttcggtgttatttttcttttagGAAGCAGCAGACGGATACCGACGTCTGCATGATGGCACAGTACAACAGACATGACAGCCCACATGACAGCCCTGAGGAAGTGACA------------------CCCGAGGTTCAGCAAATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAAGACCCCCAGGCTTTGAGTGAgtaaaataaacgggagagaggaaatgggagagaaaattttattttcattc Alignment from Exonerate_protein2genome GAAGCAGCAGATGGTTACCAACGC-TGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA aaacacatatgtagtattgatgtgctccttcggtgttatttttcttttagGAAGCAGCAGACGGATACCGACGTCTGCATGATGGCACAGTACAACAGACATGACAGCCCACATGACAGCCCTGAGGAA------GTGACACCCGAGGTTCAGCAAATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAAGACCCCCAGGCTTTGAGTGAgtaaaataaacgggagagaggaaatgggagagaaaattttattttcattc Alignment from Exonerate_coding2genome GAAGCAGCAGATGGTTACCAACGC-TGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA aaacacatatgtagtattgatgtgctccttcggtgttatttttcttttagGAAGCAGCAGACGGATACCGACGTCTGCATGATGGCACAGTACAACAGACATGACAGCCCACATGACAGCCCTGAGGAA------GTGACACCCGAGGTTCAGCAAATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAAGACCCCCAGGCTTTGAGTGAgtaaaataaacgggagagaggaaatgggagagaaaattttattttcattc Alignment from GeneWise GAAGCAGCAGATGGTTACCAA-CGCTGTATGATGGCACAGTACAACAGACATGATAGCCCTGAGGATGTGAAGCGGCGGGCCATGGCTGACCCTGAGGTGCAGCAGATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAGGACCCCCAGGCTCTGAGCGA aaacacatatgtagtattgatgtgctccttcggtgttatttttcttttagGAAGCAGCAGACGGATACCGACGTCTGCATGATGGCACAGTACAACAGACATGACAGCCCACATGACAGCCCTGAGGAAGTGACA------CCCGAGGTTCAGCAAATAATGAGTGACCCAGCCATGAGACTCATCCTGGAGCAGATGCAAAAAGACCCCCAGGCTTTGAGTGAgtaaaataaacgggagagaggaaatgggagagaaaattttattttcattc #### Stip1_ID1989_12 --> 2 - 0 Original Alignment tcAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAA-AAAGCGTTAGACCTGGACTCCAGCTGTAAG agagtgagagaagggtagtaggaccagccacctgtacctctcccctgcagacAAGGGTTATACCCGGCAAGCAGCTGCTCTAGAAGCCATGAAGGACTATACAAAAGCGATGCAC------CAACAAGGCATTAGACCTGGACTCCAGTTGCAAAgtgtggtgctgctagcttatacacagatccctgcttatgtgacctaggat Alignment from CESAR tcAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAA-AAAGCGTTAGACCTGGACTCCAGCTGTAAG agagtgagagaagggtagtaggaccagccacctgtacctctcccctgcagacAAGGGTTATACCCGGCAAGCAGCTGCTCTAGAAGCCATGAAGGACTATACAAAAGCGATG------CACCAACAAGGCATTAGACCTGGACTCCAGTTGCAAAgtgtggtgctgctagcttatacacagatccctgcttatgtgacctaggat Alignment from Spaln_aa2Genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG agagtgagagaagggtagtaggaccagccacctgtacctctcccctgcagACAAGGGTTATACCCGGCAAGCAGCTGCTCTAGAAGCCATGAAGGACTATACAAAAGCGATGCACC-----AACAAGGCATTAGACCTGGACTCCAGTTGCAAAgtgtggtgctgctagcttatacacagatccctgcttatgtgacctaggat Alignment from Spaln_nt2Genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAG-CGTTAGACCTGGACTCCAGCTGTAAG agagtgagagaagggtagtaggaccagccacctgtacctctcccctgcagACAAGGGTTATACCCGGCAAGCAGCTGCTCTAGAAGCCATGAAGGACTATACAAAAGCGA------TGCACCAACAAGGCATTAGACCTGGACTCCAGTTGCAAAgtgtggtgctgctagcttatacacagatccctgcttatgtgacctaggat Alignment from Pairagon TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAA-AAAGCGTTAGACCTGGACTCCAGCTGTAAG agagtgagagaagggtagtaggaccagccacctgtacctctcccctgcagACAAGGGTTATACCCGGCAAGCAGCTGCTCTAGAAGCCATGAAGGACTATACAAAAGCGA------TGCACCAACAAGGCATTAGACCTGGACTCCAGTTGCAAAgtgtggtgctgctagcttatacacagatccctgcttatgtgacctaggat Alignment from Exonerate_protein2genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAA-AAAGCGTTAGACCTGGACTCCAGCTGTAAG agagtgagagaagggtagtaggaccagccacctgtacctctcccctgcagACAAGGGTTATACCCGGCAAGCAGCTGCTCTAGAAGCCATGAAGGACTATACAAAAGCGATG------CACCAACAAGGCATTAGACCTGGACTCCAGTTGCAAAgtgtggtgctgctagcttatacacagatccctgcttatgtgacctaggat Alignment from Exonerate_coding2genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAA-AAAGCGTTAGACCTGGACTCCAGCTGTAAG agagtgagagaagggtagtaggaccagccacctgtacctctcccctgcagACAAGGGTTATACCCGGCAAGCAGCTGCTCTAGAAGCCATGAAGGACTATACAAAAGCGATG------CACCAACAAGGCATTAGACCTGGACTCCAGTTGCAAAgtgtggtgctgctagcttatacacagatccctgcttatgtgacctaggat Alignment from GeneWise TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAA-AAAGCGTTAGACCTGGACTCCAGCTGTAAG agagtgagagaagggtagtaggaccagccacctgtacctctcccctgcagACAAGGGTTATACCCGGCAAGCAGCTGCTCTAGAAGCCATGAAGGACTATACAAAAGCGATG------CACCAACAAGGCATTAGACCTGGACTCCAGTTGCAAAgtgtggtgctgctagcttatacacagatccctgcttatgtgacctaggat #### Stx3_ID3299_7 --> 2 - 0 Original Alignment ctGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATC-TTCACTTCTGGG cagactgctcattcttcctaaatttcatgccaattatccttctcccttagctGGCAAGAAGACAACAGATGAAGAGCTAGAGGAGATGTTGGAGAGTGGTAATCCAGCCATCCTTCACTTCTGGGgtaccttacatatgcatttggttacagtcaaagtagactgctatggacct Alignment from CESAR ctGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATC-TTCACTTCTGGG cagactgctcattcttcctaaatttcatgccaattatccttctcccttagctGGCAAGAAGACAACAGATGAAGAGCTAGAGGAGATGTTGGAGAGTGGTAATCCAGCCATCCTTCACTTCTGGGgtaccttacatatgcatttggttacagtcaaagtagactgctatggacct Alignment from Spaln_aa2Genome CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATC-TTCACTTCTGGG cagactgctcattcttcctaaatttcatgccaattatccttctcccttagCTGGCAAGAAGACAACAGATGAAGAGCTAGAGGAGATGTTGGAGAGTGGTAATCCAGCCATCcTTCACTTCTGGGgtaccttacatatgcatttggttacagtcaaagtagactgctatggacct Alignment from Spaln_nt2Genome CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATC-TTCACTTCTGGG cagactgctcattcttcctaaatttcatgccaattatccttctcccttagCTGGCAAGAAGACAACAGATGAAGAGCTAGAGGAGATGTTGGAGAGTGGTAATCCAGCCATCCTTCACTTCTGGGgtaccttacatatgcatttggttacagtcaaagtagactgctatggacct Alignment from Pairagon CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCAT-CTTCACTTCTGGG cagactgctcattcttcctaaatttcatgccaattatccttctcccttagCTGGCAAGAAGACAACAGATGAAGAGCTAGAGGAGATGTTGGAGAGTGGTAATCCAGCCATCCTTCACTTCTGGGgtaccttacatatgcatttggttacagtcaaagtagactgctatggacct Alignment from Exonerate_protein2genome CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATC-TTCACTTCTGGG cagactgctcattcttcctaaatttcatgccaattatccttctcccttagCTGGCAAGAAGACAACAGATGAAGAGCTAGAGGAGATGTTGGAGAGTGGTAATCCAGCCATCCTTCACTTCTGGGgtaccttacatatgcatttggttacagtcaaagtagactgctatggacct Alignment from Exonerate_coding2genome CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCCATC-TTCACTTCTGGG cagactgctcattcttcctaaatttcatgccaattatccttctcccttagCTGGCAAGAAGACAACAGATGAAGAGCTAGAGGAGATGTTGGAGAGTGGTAATCCAGCCATCCTTCACTTCTGGGgtaccttacatatgcatttggttacagtcaaagtagactgctatggacct Alignment from GeneWise CTGGCAAGAAGACAACAGATGAGGAGCTGGAAGAGATGTTGGAGAGTGGCAACCCAGCC-ATCTTCACTTCTGGG cagactgctcattcttcctaaatttcatgccaattatccttctcccttagCTGGCAAGAAGACAACAGATGAAGAGCTAGAGGAGATGTTGGAGAGTGGTAATCCAGCCATCCTTCACTTCTGGGgtaccttacatatgcatttggttacagtcaaagtagactgctatggacct #### Syvn1_ID1383_2 --> 0 - 0 Original Alignment GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTG-TTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG cagtcagaatttggcagtaacctcaaaaatggaaccctgctgtgttccagGTCCTGTACATACAGGCCTTTGTCCTTGTCTTCCTCTTGGGGAAGGTGATGGGGAAGGTGCTTCTTTGGGCAGCTGAGGGCACCAGAGATGGAGgtaaaagaaagacaggattcagggcaaggtgtctaaatgctgtttcatat Alignment from CESAR GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTG-TTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG cagtcagaatttggcagtaacctcaaaaatggaaccctgctgtgttccagGTCCTGTACATACAGGCCTTTGTCCTTGTCTTCCTCTTGGGGAAGGTGATGGGGAAGGTGCTTCTTTGGGCAGCTGAGGGCACCAGAGATGGAGgtaaaagaaagacaggattcagggcaaggtgtctaaatgctgtttcatac Alignment from Spaln_aa2Genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTG-TTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG cagtcagaatttggcagtaacctcaaaaatggaaccctgctgtgttccagGTCCTGTACATACAGGCCTTTGTCCTTGTCTTCCTCTTGGGGAAGGTGATGGGGAAGGTGcTTCTTTGGGCAGCTGAGGGCACCAGAGATGGAGgtaaaagaaagacaggattcagggcaaggtgtctaaatgctgtttcatat Alignment from Spaln_nt2Genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTG-TTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG cagtcagaatttggcagtaacctcaaaaatggaaccctgctgtgttccagGTCCTGTACATACAGGCCTTTGTCCTTGTCTTCCTCTTGGGGAAGGTGATGGGGAAGGTGCTTCTTTGGGCAGCTGAGGGCACCAGAGATGGAGgtaaaagaaagacaggattcagggcaaggtgtctaaatgctgtttcatat Alignment from Pairagon GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTG-TTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG cagtcagaatttggcagtaacctcaaaaatggaaccctgctgtgttccagGTCCTGTACATACAGGCCTTTGTCCTTGTCTTCCTCTTGGGGAAGGTGATGGGGAAGGTGCTTCTTTGGGCAGCTGAGGGCACCAGAGATGGAGgtaaaagaaagacaggattcagggcaaggtgtctaaatgctgtttcatat Alignment from Exonerate_protein2genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTG-TTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG cagtcagaatttggcagtaacctcaaaaatggaaccctgctgtgttccagGTCCTGTACATACAGGCCTTTGTCCTTGTCTTCCTCTTGGGGAAGGTGATGGGGAAGGTGCTTCTTTGGGCAGCTGAGGGCACCAGAGATGGAGgtaaaagaaagacaggattcagggcaaggtgtctaaatgctgtttcatat Alignment from Exonerate_coding2genome GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAGGTG-TTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG cagtcagaatttggcagtaacctcaaaaatggaaccctgctgtgttccagGTCCTGTACATACAGGCCTTTGTCCTTGTCTTCCTCTTGGGGAAGGTGATGGGGAAGGTGCTTCTTTGGGCAGCTGAGGGCACCAGAGATGGAGgtaaaagaaagacaggattcagggcaaggtgtctaaatgctgtttcatat Alignment from GeneWise GTCCTGTACATCCAGGCCTTTGTCCTTGTCTTCCTCTTGGGCAAGGTGATGGGCAAG-GTGTTCTTCGGGCAGCTGAGGGCAGCAGAGATGGAG cagtcagaatttggcagtaacctcaaaaatggaaccctgctgtgttccagGTCCTGTACATACAGGCCTTTGTCCTTGTCTTCCTCTTGGGGAAGGTGATGGGGAAGGTGCTTCTTTGGGCAGCTGAGGGCACCAGAGATGGAGgtaaaagaaagacaggattcagggcaaggtgtctaaatgctgtttcatat #### Syvn1_ID1385_4 --> 0 - 1 Original Alignment ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCAC-TGCCGCATCGTCt tgaacatgtgggtgtctcttgtgggacctctcatctgtggtcttatccagATGGAGCGTAGCCCCAACATTTCCTGGCTCTTCCACCTGCAGGATTGTCtgtaagagaaacttgatacattagaggggtgtgtatattctgtttgaggga Alignment from CESAR ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCAC-TGCCGCATCGTCt tgaacatgtgggtgtctcttgtgggacctctcatctgtggtcttatccagATGGAGCGTAGCCCCAACATTTCCTGGCTCTTCCACCTGCAGGATTGTCtgtaagagaaacttgatacattagaggggtgtgtatattctgtttgaggga Alignment from Spaln_aa2Genome ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCGTCT tgaacatgtgggtgtctcttgtgggacctctcatctgtggtcttatccagATGGAGCGTAGCCCCAACATTTCCTGGCTCTTCCACCTGCAG---GATTgtctgtaagagaaacttgatacattagaggggtgtgtatattctgtttgaggga Alignment from Spaln_nt2Genome ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCAC-TGCCGCATCGTCT tgaacatgtgggtgtctcttgtgggacctctcatctgtggtcttatccagATGGAGCGTAGCCCCAACATTTCCTGGCTCTTCCACCTGCAGGATTGTCTgtaagagaaacttgatacattagaggggtgtgtatattctgtttgaggga Alignment from Pairagon ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCA-CTGCCGCATCGTCT tgaacatgtgggtgtctcttgtgggacctctcatctgtggtcttatccagATGGAGCGTAGCCCCAACATTTCCTGGCTCTTCCACCTGCAGGATTGTCTgtaagagaaacttgatacattagaggggtgtgtatattctgtttgaggga Alignment from Exonerate_protein2genome ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCAC-TGCCGCATCGTCT tgaacatgtgggtgtctcttgtgggacctctcatctgtggtcttatccagATGGAGCGTAGCCCCAACATTTCCTGGCTCTTCCACCTGCAGGATTGTCTgtaagagaaacttgatacattagaggggtgtgtatattctgtttgaggga Alignment from Exonerate_coding2genome ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCAC-TGCCGCATCGTCT tgaacatgtgggtgtctcttgtgggacctctcatctgtggtcttatccagATGGAGCGTAGCCCCAACATTTCCTGGCTCTTCCACCTGCAGGATTGTCTgtaagagaaacttgatacattagaggggtgtgtatattctgtttgaggga Alignment from GeneWise --------------------------------------------------ATGGAACGCAGCCCCAACATCTCCTGGCTCTTCCACTGCCGCATCG TGAACATGTGGGTGTCTCTTGTGGGACCTCTCATCTGTGGTCTTATCCAGATGGAGCGTAGCCCCAACATTTCCTGGCTCTTCCACCTGCAGGATTgtctgtaagagaaacttgatacattagaggggtgtgtatattctgtttgaggga #### Syvn1_ID1388_7 --> 2 - 2 Original Alignment gcTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTG-CACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGag ggtgcatctgccaaccccgcagttggctcctactctctgaccatccctaggcTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCATCATGATCAAGGTGCCACACATTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGaggtaggttgggccttgtgtttgtcagtttgtcacttcgatatttgtcttca Alignment from CESAR gcTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTG-CACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGag ggtgcatctgccaaccccgcagttggctcctactctctgaccatccctaggcTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCATCATGATCAAGGTGCCACACATTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGaggtaggttgggccttgtgtttgtcagtttgtcacttcgatatttgtcttca Alignment from Spaln_aa2Genome GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTG-CACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgcatctgccaaccccgcagttggctcctactctctgaccatccctagGCTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCATCATGATCAAGGTGcCACACATTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtaggttgggccttgtgtttgtcagtttgtcacttcgatatttgtcttca Alignment from Spaln_nt2Genome GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTG-CACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgcatctgccaaccccgcagttggctcctactctctgaccatccctagGCTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCATCATGATCAAGGTGCCACACATTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtaggttgggccttgtgtttgtcagtttgtcacttcgatatttgtcttca Alignment from Pairagon GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTG-CACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgcatctgccaaccccgcagttggctcctactctctgaccatccctagGCTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCATCATGATCAAGGTGCCACACATTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtaggttgggccttgtgtttgtcagtttgtcacttcgatatttgtcttca Alignment from Exonerate_protein2genome GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTG-CACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgcatctgccaaccccgcagttggctcctactctctgaccatccctagGCTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCATCATGATCAAGGTGCCACACATTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtaggttgggccttgtgtttgtcagtttgtcacttcgatatttgtcttca Alignment from Exonerate_coding2genome GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAGGTG-CACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgcatctgccaaccccgcagttggctcctactctctgaccatccctagGCTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCATCATGATCAAGGTGCCACACATTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtaggttgggccttgtgtttgtcagtttgtcacttcgatatttgtcttca Alignment from GeneWise GCTTCATCAAGGTCCTGCTGTACATGGCCTTCATGACCATCATGATCAAG-GTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgcatctgccaaccccgcagttggctcctactctctgaccatccctagGCTTCATCAAGGTGCTGCTGTATATGGCCTTCATGACCATCATGATCAAGGTGCCACACATTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtaggttgggccttgtgtttgtcagtttgtcacttcgatatttgtcttca #### Syvn1_ID1391_10 --> 1 - 1 Original Alignment cTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCG-TTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATt ggggattggctaacagtgacctactgacctgcctactgttccttttgtagcTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCTGTCTGACATGCCATATGGATGTTTTGCGGGCATCACTTGCCAGCCCAGTTACCACCACCTCCCGAGCCTGCTGAGCAAGGACCCCCCCCTGCACCTCAGCCCCAACCACTTCTGCCG---CCCCCTAATagtacccgatatttcatagtgcagggccatcggacaagaaactttacccta Alignment from CESAR cTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCG-TTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATt ggggattggctaacagtgacctactgacctgcctactgttccttttgtagcTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCTGTCTGACATGCCATATGGATGTTTTGCGGGCATCACTTGCCAGCCCAGTTACCACCACCTCCCGAGCCTGCTGAGCAAGGACCCCCCCCTGCACCTCAGCCCCAACCACTTCTGCCG---CCCCCTAATagtacccgatatttcatagtgcagggccatcggacaagaaactttacccta Alignment from Spaln_aa2Genome CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCG-TTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT ggggattggctaacagtgacctactgacctgcctactgttccttttgtagCTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCTGTCTGACATGCCATATGGATGTTTTGCGGGCATCAcTTGCCAGCCCAGTTACCACCACCTCCCGAGCCTGCTGAGCAAGGACCCCCCCCTGCACCTCAGCCCCAACCACTTCTGCCG---CCCCCTAATAgtacccgatatttcatagtgcagggccatcggacaagaaactttacccta Alignment from Spaln_nt2Genome CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCG-TTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT ggggattggctaacagtgacctactgacctgcctactgttccttttgtagCTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCTGTCTGACATGCCATATGGATGTTTTGCGGGCATCACTTGCCAGCCCAGTTACCACCACCTCCCGAGCCTGCTGAGCAAGGACCCCCCCCTGCACCTCAGCCCCAACCACTTCTGCC---GCCCCCTAATAgtacccgatatttcatagtgcagggccatcggacaagaaactttacccta Alignment from Pairagon CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCG-TTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT ggggattggctaacagtgacctactgacctgcctactgttccttttgtagCTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCTGTCTGACATGCCATATGGATGTTTTGCGGGCATCACTTGCCAGCCCAGTTACCACCACCTCCCGAGCCTGCTGAGCAAGGACCCCCCCCTGCACCTCAGCCCCAACCACTTCTGCC---GCCCCCTAATAgtacccgatatttcatagtgcagggccatcggacaagaaactttacccta Alignment from Exonerate_protein2genome CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCG-TTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT ggggattggctaacagtgacctactgacctgcctactgttccttttgtagCTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCTGTCTGACATGCCATATGGATGTTTTGCGGGCATCACTTGCCAGCCCAGTTACCACCACCTCCCGAGCCTGCTGAGCAAGGACCCCCCCCTGCACCTCAGCCCCAACCACTTCTGCCG---CCCCCTAATAgtacccgatatttcatagtgcagggccatcggacaagaaactttacccta Alignment from Exonerate_coding2genome CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCATCG-TTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT ggggattggctaacagtgacctactgacctgcctactgttccttttgtagCTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCTGTCTGACATGCCATATGGATGTTTTGCGGGCATCACTTGCCAGCCCAGTTACCACCACCTCCCGAGCCTGCTGAGCAAGGACCCCCCCCTGCACCTCAGCCCCAACCACTTCTGCCG---CCCCCTAATAgtacccgatatttcatagtgcagggccatcggacaagaaactttacccta Alignment from GeneWise CTGCCTGCGCTCCTGGTTCCAGAGACAGCAGACCTGCCCGACATGCCGCATGGATGTCCTGCGGGCA-TCGTTGCCAGCCCAGTCACCACCACCTCCTGAGCCTGCTGACCAAGGACCACCCCCCGCCCCTCATCCCCAACCGCTGCTGCCACAGCCCCCTAATT ggggattggctaacagtgacctactgacctgcctactgttccttttgtagCTGCTTGCACTCCTGGTTCCGGAGACAGCAGACCTGTCTGACATGCCATATGGATGTTTTGCGGGCATCACTTGCCAGCCCAGTTACCACCACCTCCCGAGCCTGCTGAGCAAGGACCCCCCCCTGCACCTCAGCCCCAACCACTTCTGCCG---CCCCCTAATAgtacccgatatttcatagtgcagggccatcggacaagaaactttacccta #### Syvn1_ID1393_12 --> 2 - 1 Original Alignment ccGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCT-CTGCCTCCACCTTTTg gtaattgacccacttccaatataccttggtgacttgtcctctgcctgcagctGTTTCTCAGCCTAGTGGAGCAGCAACCACTCCAGCTTCTGGCACAAGTCCCTCTGCCCCAGCATCTGGGTCTGTACCCAGTGCAGAGGCCGGTCCTGCCCCTGATTTCCCTTTCCCCCCTCCCTGGATGGGGATGCCTCCTACCTCCACCATTTggtaaggtgcccatcacctaccctctttgacatgatgtggaatactgagcc Alignment from CESAR ccGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCT-CTGCCTCCACCTTTTg gtaattgacccacttccaatataccttggtgacttgtcctctgcctgcagctGTTTCTCAGCCTAGTGGAGCAGCAACCACTCCAGCTTCTGGCACAAGTCCCTCTGCCCCAGCATCTGGGTCTGTACCCAGTGCAGAGGCCGGTCCTGCCCCTGATTTCCCTTTCCCCCCTCCCTGGATGGGGATGCCTCCTACCTCCACCATTTggtaaggtgcccatcacctaccctctttgacatgatgtggaatactgagcc Alignment from Spaln_aa2Genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCT-CTGCCTCCACCTTTTG gtaattgacccacttccaatataccttggtgacttgtcctctgcctgcagCTGTTTCTCAGCCTAGTGGAGCAGCAACCACTCCAGCTTCTGGCACAAGTCCCTCTGCCCCAGCATCTGGGTCTGTACCCAGTGCAGAGGCCGGTCCTGCCCCTGATTTCCCTTTCCCCCCTCCCTGGATGGGGATGCCTcCTACCTCCACCATTTGgtaaggtgcccatcacctaccctctttgacatgatgtggaatactgagcc Alignment from Spaln_nt2Genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTC-TGCCTCCACCTTTTG gtaattgacccacttccaatataccttggtgacttgtcctctgcctgcagCTGTTTCTCAGCCTAGTGGAGCAGCAACCACTCCAGCTTCTGGCACAAGTCCCTCTGCCCCAGCATCTGGGTCTGTACCCAGTGCAGAGGCCGGTCCTGCCCCTGATTTCCCTTTCCCCCCTCCCTGGATGGGGATGCCTCCTACCTCCACCATTTGgtaaggtgcccatcacctaccctctttgacatgatgtggaatactgagcc Alignment from Pairagon CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCT-CTGCCTCCACCTTTTG gtaattgacccacttccaatataccttggtgacttgtcctctgcctgcagCTGTTTCTCAGCCTAGTGGAGCAGCAACCACTCCAGCTTCTGGCACAAGTCCCTCTGCCCCAGCATCTGGGTCTGTACCCAGTGCAGAGGCCGGTCCTGCCCCTGATTTCCCTTTCCCCCCTCCCTGGATGGGGATGCCTCCTACCTCCACCATTTGgtaaggtgcccatcacctaccctctttgacatgatgtggaatactgagcc Alignment from Exonerate_protein2genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCT-CTGCCTCCACCTTTTG gtaattgacccacttccaatataccttggtgacttgtcctctgcctgcagCTGTTTCTCAGCCTAGTGGAGCAGCAACCACTCCAGCTTCTGGCACAAGTCCCTCTGCCCCAGCATCTGGGTCTGTACCCAGTGCAGAGGCCGGTCCTGCCCCTGATTTCCCTTTCCCCCCTCCCTGGATGGGGATGCCTCCTACCTCCACCATTTGgtaaggtgcccatcacctaccctctttgacatgatgtggaatactgagcc Alignment from Exonerate_coding2genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCT-CTGCCTCCACCTTTTG gtaattgacccacttccaatataccttggtgacttgtcctctgcctgcagCTGTTTCTCAGCCTAGTGGAGCAGCAACCACTCCAGCTTCTGGCACAAGTCCCTCTGCCCCAGCATCTGGGTCTGTACCCAGTGCAGAGGCCGGTCCTGCCCCTGATTTCCCTTTCCCCCCTCCCTGGATGGGGATGCCTCCTACCTCCACCATTTGgtaaggtgcccatcacctaccctctttgacatgatgtggaatactgagcc Alignment from GeneWise CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCT-CTGCCTCCACCTTTTG gtaattgacccacttccaatataccttggtgacttgtcctctgcctgcagCTGTTTCTCAGCCTAGTGGAGCAGCAACCACTCCAGCTTCTGGCACAAGTCCCTCTGCCCCAGCATCTGGGTCTGTACCCAGTGCAGAGGCCGGTCCTGCCCCTGATTTCCCTTTCCCCCCTCCCTGGATGGGGATGCCTCCTACCTCCACCATTTGgtaaggtgcccatcacctaccctctttgacatgatgtggaatactgagcc #### Syvn1_ID1394_13 --> 2 - 2 Original Alignment ccTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTA-CTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGgg tggaatactgagcccaggtagctaagcccatcaagtccctgtctctgcagccTTCCCCCCAATGCCAGTACCACCTGCCGGATTTGCTGGTCTAACTCCAGAGGAGTTGTGTGCACTAGAAGGTCATGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACTACCTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGgggtgagtaagtatattcaattgcacattcctctgtaaccagaccacctatt Alignment from CESAR ccTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTA-CTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGgg tggaatactgagcccaggtagctaagcccatcaagtccctgtctctgcagccTTCCCCCCAATGCCAGTACCACCTGCCGGATTTGCTGGTCTAACTCCAGAGGAGTTGTGTGCACTAGAAGGTCATGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACTACCTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGgggtgagtaagtatattcaattgcacattcctctgtaaccagaccacctatt Alignment from Spaln_aa2Genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTA-CTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG tggaatactgagcccaggtagctaagcccatcaagtccctgtctctgcagCCTTCCCCCCAATGCCAGTACCACCTGCCGGATTTGCTGGTCTAACTCCAGAGGAGTTGTGTGCACTAGAAGGTCATGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACTAcCTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGGGgtgagtaagtatattcaattgcacattcctctgtaaccagaccacctatt Alignment from Spaln_nt2Genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTA-CTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG tggaatactgagcccaggtagctaagcccatcaagtccctgtctctgcagCCTTCCCCCCAATGCCAGTACCACCTGCCGGATTTGCTGGTCTAACTCCAGAGGAGTTGTGTGCACTAGAAGGTCATGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACTACCTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGGGgtgagtaagtatattcaattgcacattcctctgtaaccagaccacctatt Alignment from Pairagon CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTA-CTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG tggaatactgagcccaggtagctaagcccatcaagtccctgtctctgcagCCTTCCCCCCAATGCCAGTACCACCTGCCGGATTTGCTGGTCTAACTCCAGAGGAGTTGTGTGCACTAGAAGGTCATGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACTACCTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGGGgtgagtaagtatattcaattgcacattcctctgtaaccagaccacctatt Alignment from Exonerate_protein2genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTA-CTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG tggaatactgagcccaggtagctaagcccatcaagtccctgtctctgcagCCTTCCCCCCAATGCCAGTACCACCTGCCGGATTTGCTGGTCTAACTCCAGAGGAGTTGTGTGCACTAGAAGGTCATGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACTACCTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGGGgtgagtaagtatattcaattgcacattcctctgtaaccagaccacctatt Alignment from Exonerate_coding2genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTA-CTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG tggaatactgagcccaggtagctaagcccatcaagtccctgtctctgcagCCTTCCCCCCAATGCCAGTACCACCTGCCGGATTTGCTGGTCTAACTCCAGAGGAGTTGTGTGCACTAGAAGGTCATGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACTACCTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGGGgtgagtaagtatattcaattgcacattcctctgtaaccagaccacctatt Alignment from GeneWise CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTA-CTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG tggaatactgagcccaggtagctaagcccatcaagtccctgtctctgcagCCTTCCCCCCAATGCCAGTACCACCTGCCGGATTTGCTGGTCTAACTCCAGAGGAGTTGTGTGCACTAGAAGGTCATGAGCGGCAAGACCTGGAGGCCCGTCTGCAGAGTCTGCGCAACATACACACACTACCTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGGGgtgagtaagtatattcaattgcacattcctctgtaaccagaccacctatt #### Syvn1_ID1395_14 --> 1 - 1 Original Alignment gCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCT-ACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTg cagcaatcccagaggcccaatgttgggaaactgtctccttttctccttaggCCCCCAAGGCCAGCCACCTCTGTGAACCACACTGAAGAAACTGCATCTCACTGTGGTATTTGCTGCACCTTCCAGTAGTGCTCCAAGCTCCGAGGCTCCAACTCCTTCCCCGGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTggtgagttagaaaaagaataggcctgcagaatctaggtggtattatggctt Alignment from CESAR gCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCT-ACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTg cagcaatcccagaggcccaatgttgggaaactgtctccttttctccttaggCCCCCAAGGCCAGCCACCTCTGTGAACCACACTGAAGAAACTGCATCTCACTGTGGTATTTGCTGCACCTTCCAGTAGTGCTCCAAGCTCCGAGGCTCCAACTCCTTCCCCGGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTggtgagttagaaaaagaataggcctgcagaatctaggtggtattatggctt Alignment from Spaln_aa2Genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCT-ACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG cagcaatcccagaggcccaatgttgggaaactgtctccttttctccttagGCCCCCAAGGCCAGCCACCTCTGTGAACCACACTGAAGAAACTGCATCTcACTGTGGTATTTGCTGCACCTTCCAGTAGTGCTCCAAGCTCCGAGGCTCCAACTCCTTCCCCGGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtgagttagaaaaagaataggcctgcagaatctaggtggtattatggctt Alignment from Spaln_nt2Genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCT-ACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG cagcaatcccagaggcccaatgttgggaaactgtctccttttctccttagGCCCCCAAGGCCAGCCACCTCTGTGAACCACACTGAAGAAACTGCATCTCACTGTGGTATTTGCTGCACCTTCCAGTAGTGCTCCAAGCTCCGAGGCTCCAACTCCTTCCCCGGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtgagttagaaaaagaataggcctgcagaatctaggtggtattatggctt Alignment from Pairagon GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCT-ACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG cagcaatcccagaggcccaatgttgggaaactgtctccttttctccttagGCCCCCAAGGCCAGCCACCTCTGTGAACCACACTGAAGAAACTGCATCTCACTGTGGTATTTGCTGCACCTTCCAGTAGTGCTCCAAGCTCCGAGGCTCCAACTCCTTCCCCGGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtgagttagaaaaagaataggcctgcagaatctaggtggtattatggctt Alignment from Exonerate_protein2genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCT-ACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG cagcaatcccagaggcccaatgttgggaaactgtctccttttctccttagGCCCCCAAGGCCAGCCACCTCTGTGAACCACACTGAAGAAACTGCATCTCACTGTGGTATTTGCTGCACCTTCCAGTAGTGCTCCAAGCTCCGAGGCTCCAACTCCTTCCCCGGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtgagttagaaaaagaataggcctgcagaatctaggtggtattatggctt Alignment from Exonerate_coding2genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCT-ACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG cagcaatcccagaggcccaatgttgggaaactgtctccttttctccttagGCCCCCAAGGCCAGCCACCTCTGTGAACCACACTGAAGAAACTGCATCTCACTGTGGTATTTGCTGCACCTTCCAGTAGTGCTCCAAGCTCCGAGGCTCCAACTCCTTCCCCGGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtgagttagaaaaagaataggcctgcagaatctaggtggtattatggctt Alignment from GeneWise GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCC-TCTACAGTGGTATCTGCTGCCCCTTCCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG cagcaatcccagaggcccaatgttgggaaactgtctccttttctccttagGCCCCCAAGGCCAGCCACCTCTGTGAACCACACTGAAGAAACTGCATCTCACTGTGGTATTTGCTGCACCTTCCAGTAGTGCTCCAAGCTCCGAGGCTCCAACTCCTTCCCCGGGAGCATCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTGgtgagttagaaaaagaataggcctgcagaatctaggtggtattatggctt #### Tcirg1_ID171_16 --> 0 - 0 Original Alignment GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAG-GCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagataatttcaggagactgcgtgacctctgctctgcctgcagGATGAGGACACAGATAAACTACTTGCTTCCCCTGATGCATCAACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGGAGCGCTGGGAGCCCAGGGGAAGAAGAAACTGATgtaccaagacctatagttgctaaggatggcctgccagaccagattattat Alignment from CESAR GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAG-GCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagataatttcaggagactgcgtgacctctgctctgcctgcagGATGAGGACACAGATAAACTACTTGCTTCCCCTGATGCATCAACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGGAGCGCTGGGAGCCCAGGGGAAGAAGAAACTGATgtaccaagacctatagttgctaaggatggcctgccagaccagattattat Alignment from Spaln_aa2Genome GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAG-GCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagataatttcaggagactgcgtgacctctgctctgcctgcagGATGAGGACACAGATAAACTACTTGCTTCCCCTGATGCATCAACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGGAGcGCTGGGAGCCCAGGGGAAGAAGAAACTGATgtaccaagacctatagttgctaaggatggcctgccagaccagattattat Alignment from Spaln_nt2Genome GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAG-GCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagataatttcaggagactgcgtgacctctgctctgcctgcagGATGAGGACACAGATAAACTACTTGCTTCCCCTGATGCATCAACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGGAGCGCTGGGAGCCCAGGGGAAGAAGAAACTGATgtaccaagacctatagttgctaaggatggcctgccagaccagattattat Alignment from Pairagon GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAG-GCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagataatttcaggagactgcgtgacctctgctctgcctgcagGATGAGGACACAGATAAACTACTTGCTTCCCCTGATGCATCAACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGGAGCGCTGGGAGCCCAGGGGAAGAAGAAACTGATgtaccaagacctatagttgctaaggatggcctgccagaccagattattat Alignment from Exonerate_protein2genome GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAG-GCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagataatttcaggagactgcgtgacctctgctctgcctgcagGATGAGGACACAGATAAACTACTTGCTTCCCCTGATGCATCAACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGGAGCGCTGGGAGCCCAGGGGAAGAAGAAACTGATgtaccaagacctatagttgctaaggatggcctgccagaccagattattat Alignment from Exonerate_coding2genome GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGAAG-GCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagataatttcaggagactgcgtgacctctgctctgcctgcagGATGAGGACACAGATAAACTACTTGCTTCCCCTGATGCATCAACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGGAGCGCTGGGAGCCCAGGGGAAGAAGAAACTGATgtaccaagacctatagttgctaaggatggcctgccagaccagattattat Alignment from GeneWise GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGAACAGCTGGAGCCCTGATGAGGAG-AAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagataatttcaggagactgcgtgacctctgctctgcctgcagGATGAGGACACAGATAAACTACTTGCTTCCCCTGATGCATCAACCTTGGAGAACAGCTGGAGCCCTGATGAGGAGGAGCGCTGGGAGCCCAGGGGAAGAAGAAACTGATgtaccaagacctatagttgctaaggatggcctgccagaccagattattat #### Tcirg1_ID175_12 --> 1 - 0 Original Alignment tGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTG-AACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG caggttacctgacgtgaagtatagcttagtttttcttacatatctttcagcGATGAGTATCTATCCCAGCACTCGATGCTAACCTTGCAACCCTAACATTACTGGAGTCCTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtgagtgagcatacaagtgcacggtaaagaggtgcatgggaaggcagtca Alignment from CESAR tGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTG-AACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG caggttacctgacgtgaagtatagcttagtttttcttacatatctttcagcGATGAGTATCTATCCCAGCACTCGATGCTAACCTTGCAACCCTAACATTACTGGAGTCCTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtgagtgagcatacaagtgcacggtaaagaggtgcatgggaaggcagtca Alignment from Spaln_aa2Genome TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTGAACCCT-AACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG caggttacctgacgtgaagtatagcttagtttttcttacatatctttcagCGATGAGTATCTATCCCAGCACTCGATGCTAACCTTGCAACCCtAACATTACTGGAGTCCTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtgagtgagcatacaagtgcacggtaaagaggtgcatgggaaggcagtca Alignment from Spaln_nt2Genome TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTG-AACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG caggttacctgacgtgaagtatagcttagtttttcttacatatctttcagCGATGAGTATCTATCCCAGCACTCGATGCTAACCTTGCAACCCTAACATTACTGGAGTCCTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtgagtgagcatacaagtgcacggtaaagaggtgcatgggaaggcagtca Alignment from Pairagon ------------------------------------------------AGTGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTG-AACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG CAGGTTACCTGACGTGAAGTATAGCTTAGTTTTTCTTACATATCTTTCAGCGATGAGTATCTATCCCAGCACTCGATGCTAACCTTGCAACCCTAACATTACTGGAGTCCTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtgagtgagcatacaagtgcacggtaaagaggtgcatgggaaggcagtca Alignment from Exonerate_protein2genome TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTG-AACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG caggttacctgacgtgaagtatagcttagtttttcttacatatctttcagCGATGAGTATCTATCCCAGCACTCGATGCTAACCTTGCAACCCTAACATTACTGGAGTCCTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtgagtgagcatacaagtgcacggtaaagaggtgcatgggaaggcagtca Alignment from Exonerate_coding2genome TGACGAGTATCTGTCCCAGCACTCCATGCTCACCCTG-AACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG caggttacctgacgtgaagtatagcttagtttttcttacatatctttcagCGATGAGTATCTATCCCAGCACTCGATGCTAACCTTGCAACCCTAACATTACTGGAGTCCTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtgagtgagcatacaagtgcacggtaaagaggtgcatgggaaggcagtca Alignment from GeneWise TGACGAGTATCTGTCCCAGCACTCCATGCTCACC-CTGAACCCTAACATCACTGGTGTCTTCCTTGGACCATATCCCTTTGGCATTGACCCG caggttacctgacgtgaagtatagcttagtttttcttacatatctttcagCGATGAGTATCTATCCCAGCACTCGATGCTAACCTTGCAACCCTAACATTACTGGAGTCCTCCTTGGACCATACCCCTTTGGCATTGAGCCAgtgagtgagcatacaagtgcacggtaaagaggtgcatgggaaggcagtca #### Tcirg1_ID176_11 --> 0 - 2 Original Alignment ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTC-TACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGag aatccaaaccagggaacctatctttttcgctttgttctgtacacacgcagATCTGGCAGACCTTCTTTGGAGGTCAGTACCTACTTCTCCTTACAGGTCTGTTCTCTGTCCTACACTGGCTTTATCTCTACTGAGTGTTATAGCCAGGCAGCTACTATTTTTCCGTCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCAGGCTGGctgtgagcctatgatggttggtacgtgtccaggttacctgacgtgaagtata Alignment from CESAR ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTC-TACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGag aatccaaaccagggaacctatctttttcgctttgttctgtacacacgcagATCTGGCAGACCTTCTTTGGAGGTCAGTACCTACTTCTCCTTACAGGTCTGTTCTCTGTCCTACACTGGCTTTATCTCTACTGAGTGTTATAGCCAGGCAGCTACTATTTTTCCGTCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCAGGCTGGctgtgagcctatgatggttggtacgtgtccaggttacctgacgtgaagtata Alignment from Spaln_aa2Genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTC-TACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG aatccaaaccagggaacctatctttttcgctttgttctgtacacacgcagATCTGGCAGACCTTCTTTGGAGGTCAGTACCTACTTCTCCTTACAGGTCTGTTCTCTGTCcTACACTGGCTTTATCTCTACTGAGTGTTATAGCCAGGCAGCTACTATTTTTCCGTCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCAGGCTGGCTgtgagcctatgatggttggtacgtgtccaggttacctgacgtgaagtata Alignment from Spaln_nt2Genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTC-TACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG aatccaaaccagggaacctatctttttcgctttgttctgtacacacgcagATCTGGCAGACCTTCTTTGGAGGTCAGTACCTACTTCTCCTTACAGGTCTGTTCTCTGTCCTACACTGGCTTTATCTCTACTGAGTGTTATAGCCAGGCAGCTACTATTTTTCCGTCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCAGGCTGGCTgtgagcctatgatggttggtacgtgtccaggttacctgacgtgaagtata Alignment from Pairagon ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGT-CTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGG---------------------------------------------------- aatccaaaccagggaacctatctttttcgctttgttctgtacacacgcagATCTGGCAGACCTTCTTTGGAGGTCAGTACCTACTTCTCCTTACAGGTCTGTTCTCTGTCCTACACTGGCTTTATCTCTACTGAGTGTTATAGCCAGGCAGCTACTATTTTTCCGTCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCAGGCTGGCTGTGAGCCTATGATGGTTGGTACGTGTCCAGGTTACCTGACGTGAAGTATA Alignment from Exonerate_protein2genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTC-TACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG aatccaaaccagggaacctatctttttcgctttgttctgtacacacgcagATCTGGCAGACCTTCTTTGGAGGTCAGTACCTACTTCTCCTTACAGGTCTGTTCTCTGTCCTACACTGGCTTTATCTCTACTGAGTGTTATAGCCAGGCAGCTACTATTTTTCCGTCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCAGGCTGGCTgtgagcctatgatggttggtacgtgtccaggttacctgacgtgaagtata Alignment from Exonerate_coding2genome ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCCGTC-TACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG aatccaaaccagggaacctatctttttcgctttgttctgtacacacgcagATCTGGCAGACCTTCTTTGGAGGTCAGTACCTACTTCTCCTTACAGGTCTGTTCTCTGTCCTACACTGGCTTTATCTCTACTGAGTGTTATAGCCAGGCAGCTACTATTTTTCCGTCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCAGGCTGGCTgtgagcctatgatggttggtacgtgtccaggttacctgacgtgaagtata Alignment from GeneWise ATCTGGCAGACCTTCTTTGGGGGTCGATACCTACTCCTGCTCATGGGTCTGTTCTCC-GTCTACACTGGCTTCATCTACAATGAGTGCTTCAGCCGAGCCACCACTATTTTCCCCTCAGGTTGGAGTGTGGCTGCCATGGCCAACCAGTCAGGCTGGAG aatccaaaccagggaacctatctttttcgctttgttctgtacacacgcagATCTGGCAGACCTTCTTTGGAGGTCAGTACCTACTTCTCCTTACAGGTCTGTTCTCTGTCCTACACTGGCTTTATCTCTACTGAGTGTTATAGCCAGGCAGCTACTATTTTTCCGTCTGGTTGGAGTGTGGCAGCTATGGCCAACCAATCAGGCTGGCTgtgagcctatgatggttggtacgtgtccaggttacctgacgtgaagtata #### Tcirg1_ID183_4 --> 0 - 2 Original Alignment GTGGCAGCTGACCATACT-GAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCaa aggacctcacagtgtacatgccagtagttatcttctctgcattgtcacagGTGGCAGCTGATCACACTCGAAGGCCCTCTCTCAGAGACAACACCCCTGCTTCCAGGCACCCGGGGTCCACATTCTGACCTGAAAGTTaagtaagttggggcagcctagctttcttggccttctcacattcacgctttgc Alignment from CESAR GTGGCAGCTGACCATACT-GAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCaa aggacctcacagtgtacatgccagtagttatcttctctgcattgtcacagGTGGCAGCTGATCACACTCGAAGGCCCTCTCTCAGAGACAACACCCCTGCTTCCAGGCACCCGGGGTCCACATTCTGACCTGAAAGTTaagtaagttggggcagcctagctttcttggccttctcacattcacgctttgc Alignment from Spaln_aa2Genome GTGGCAGCTGACCATACT-GAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggacctcacagtgtacatgccagtagttatcttctctgcattgtcacagGTGGCAGCTGATCACACTcGAAGGCCCTCTCTCAGAGACAACACCCCTGCTTCCAGGCACCCGGGGTCCACATTCTGACCTGAAAGTTAAgtaagttggggcagcctagctttcttggccttctcacattcacgctttgc Alignment from Spaln_nt2Genome GTGGCAGCTGACCATACT-GAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggacctcacagtgtacatgccagtagttatcttctctgcattgtcacagGTGGCAGCTGATCACACTCGAAGGCCCTCTCTCAGAGACAACACCCCTGCTTCCAGGCACCCGGGGTCCACATTCTGACCTGAAAGTTAAgtaagttggggcagcctagctttcttggccttctcacattcacgctttgc Alignment from Pairagon GTGGCAGCTGACCATACT-GAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggacctcacagtgtacatgccagtagttatcttctctgcattgtcacagGTGGCAGCTGATCACACTCGAAGGCCCTCTCTCAGAGACAACACCCCTGCTTCCAGGCACCCGGGGTCCACATTCTGACCTGAAAGTTAAgtaagttggggcagcctagctttcttggccttctcacattcacgctttgc Alignment from Exonerate_protein2genome GTGGCAGCTGACCATACT-GAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggacctcacagtgtacatgccagtagttatcttctctgcattgtcacagGTGGCAGCTGATCACACTCGAAGGCCCTCTCTCAGAGACAACACCCCTGCTTCCAGGCACCCGGGGTCCACATTCTGACCTGAAAGTTAAgtaagttggggcagcctagctttcttggccttctcacattcacgctttgc Alignment from Exonerate_coding2genome GTGGCAGCTGACCATACT-GAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggacctcacagtgtacatgccagtagttatcttctctgcattgtcacagGTGGCAGCTGATCACACTCGAAGGCCCTCTCTCAGAGACAACACCCCTGCTTCCAGGCACCCGGGGTCCACATTCTGACCTGAAAGTTAAgtaagttggggcagcctagctttcttggccttctcacattcacgctttgc Alignment from GeneWise GTGGCAGCTGACCAT-ACTGAAGGACCCTTCTCTGAGACAACACCCCTGCTTCCAGGCACCCGGGGGCCACATTCAGACCTGAAGGTCAA aggacctcacagtgtacatgccagtagttatcttctctgcattgtcacagGTGGCAGCTGATCACACTCGAAGGCCCTCTCTCAGAGACAACACCCCTGCTTCCAGGCACCCGGGGTCCACATTCTGACCTGAAAGTTAAgtaagttggggcagcctagctttcttggccttctcacattcacgctttgc #### Tctn3_ID7996_5 --> 0 - 1 Original Alignment GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGG-GGACTTTGTGCCGAGAGCAACCCTGCAg actgcttaaagctactattgtttctgttgatttcttttctgtctcctcagGCTGGGGATCCCATCCTGACCTACTACCCAAGCTGGTCCGTGGTGAGCTTACTGAGGCAACCTGCAGCTGTGGGAGCTGGGCGGACTTTGTGCAGAGAGCAACCCGGCAggtgagcccagtgcatgtgtgcactggccccttgtccccttttgtgagttt Alignment from CESAR GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGG-GGACTTTGTGCCGAGAGCAACCCTGCAg actgcttaaagctactattgtttctgttgatttcttttctgtctcctcagGCTGGGGATCCCATCCTGACCTACTACCCAAGCTGGTCCGTGGTGAGCTTACTGAGGCAACCTGCAGCTGTGGGAGCTGGGCGGACTTTGTGCAGAGAGCAACCCGGCAggtgagcccagtgcatgtgtgcactggccccttgtccccttttgtgagttt Alignment from Spaln_aa2Genome GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGG-GGACTTTGTGCCGAGAGCAACCCTGCAG actgcttaaagctactattgtttctgttgatttcttttctgtctcctcagGCTGGGGATCCCATCCTGACCTACTACCCAAGCTGGTCCGTGGTGAGCTTACTGAGGCAACCTGCAGCTGTGGGAGCTGGGcGGACTTTGTGCAGAGAGCAACCCGGCAGgtgagcccagtgcatgtgtgcactggccccttgtccccttttgtgagttt Alignment from Spaln_nt2Genome GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGG-GGACTTTGTGCCGAGAGCAACCCTGCAG actgcttaaagctactattgtttctgttgatttcttttctgtctcctcagGCTGGGGATCCCATCCTGACCTACTACCCAAGCTGGTCCGTGGTGAGCTTACTGAGGCAACCTGCAGCTGTGGGAGCTGGGCGGACTTTGTGCAGAGAGCAACCCGGCAGgtgagcccagtgcatgtgtgcactggccccttgtccccttttgtgagttt Alignment from Pairagon GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCTGGG-GGACTTTGTGCCGAGAGCAACCCTGCAG actgcttaaagctactattgtttctgttgatttcttttctgtctcctcagGCTGGGGATCCCATCCTGACCTACTACCCAAGCTGGTCCGTGGTGAGCTTACTGAGGCAACCTGCAGCTGTGGGAGCTGGGCGGACTTTGTGCAGAGAGCAACCCGGCAGgtgagcccagtgcatgtgtgcactggccccttgtccccttttgtgagttt Alignment from Exonerate_protein2genome GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCT-GGGGGACTTTGTGCCGAGAGCAACCCTGCAG actgcttaaagctactattgtttctgttgatttcttttctgtctcctcagGCTGGGGATCCCATCCTGACCTACTACCCAAGCTGGTCCGTGGTGAGCTTACTGAGGCAACCTGCAGCTGTGGGAGCTGGGCGGACTTTGTGCAGAGAGCAACCCGGCAGgtgagcccagtgcatgtgtgcactggccccttgtccccttttgtgagttt Alignment from Exonerate_coding2genome GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGAGCT-GGGGGACTTTGTGCCGAGAGCAACCCTGCAG actgcttaaagctactattgtttctgttgatttcttttctgtctcctcagGCTGGGGATCCCATCCTGACCTACTACCCAAGCTGGTCCGTGGTGAGCTTACTGAGGCAACCTGCAGCTGTGGGAGCTGGGCGGACTTTGTGCAGAGAGCAACCCGGCAGgtgagcccagtgcatgtgtgcactggccccttgtccccttttgtgagttt Alignment from GeneWise GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGCAGCCTGCAGCGGTGGGA-GCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG actgcttaaagctactattgtttctgttgatttcttttctgtctcctcagGCTGGGGATCCCATCCTGACCTACTACCCAAGCTGGTCCGTGGTGAGCTTACTGAGGCAACCTGCAGCTGTGGGAGCTGGGCGGACTTTGTGCAGAGAGCAACCCGGCAGgtgagcccagtgcatgtgtgcactggccccttgtccccttttgtgagttt #### Tdrd1_ID12205_6 --> 0 - 0 Original Alignment GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGT-CTCCAACTCAAGAAAACCATGGAGATAAAG catacatgcagggtgggctgcctcaacccttgatacctttcacttttcagGTTGATTGCCCCCCAGGAGTT---AAACAAATAACAGTAGGTGCTGAGAGAGTTATGTTCTCTGATTTGAGAAGTCCTTCAACTAAAGAAAACAATGGAGATAAAAgtatggggatttgcctcctacttgcctcccacacgtgatcccactgaaat Alignment from CESAR GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGT-CTCCAACTCAAGAAAACCATGGAGATAAAG catacatgcagggtgggctgcctcaacccttgatacctttcacttttcagGTTGATTGCCCCCCAGGAGTT---AAACAAATAACAGTAGGTGCTGAGAGAGTTATGTTCTCTGATTTGAGAAGTCCTTCAACTAAAGAAAACAATGGAGATAAAAgtatggggatttgcctcctacttgcctcccacacgtgatcccactgaaat Alignment from Spaln_aa2Genome GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGT-CTCCAACTCAAGAAAACCATGGAGATAAAG catacatgcagggtgggctgcctcaacccttgatacctttcacttttcagGTTGATTGCCCCCCAGGAGTT---AAACAAATAACAGTAGGTGCTGAGAGAGTTATGTTCTCTGATTTGAGAAGTcCTTCAACTAAAGAAAACAATGGAGATAAAAgtatggggatttgcctcctacttgcctcccacacgtgatcccactgaaat Alignment from Spaln_nt2Genome GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGTC-TCCAACTCAAGAAAACCATGGAGATAAAG catacatgcagggtgggctgcctcaacccttgatacctttcacttttcagGTTGATTGCCCCCCAGGAGT---TAAACAAATAACAGTAGGTGCTGAGAGAGTTATGTTCTCTGATTTGAGAAGTCCTTCAACTAAAGAAAACAATGGAGATAAAAgtatggggatttgcctcctacttgcctcccacacgtgatcccactgaaat Alignment from Pairagon GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGT-CTCCAACTCAAGAAAACCATGGAGATAAAG catacatgcagggtgggctgcctcaacccttgatacctttcacttttcagGTTGATTGCCCCCCAGGAGT---TAAACAAATAACAGTAGGTGCTGAGAGAGTTATGTTCTCTGATTTGAGAAGTCCTTCAACTAAAGAAAACAATGGAGATAAAAgtatggggatttgcctcctacttgcctcccacacgtgatcccactgaaat Alignment from Exonerate_protein2genome GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGT-CTCCAACTCAAGAAAACCATGGAGATAAAG catacatgcagggtgggctgcctcaacccttgatacctttcacttttcagGTTGATTGCCCCCCAGGAGTT---AAACAAATAACAGTAGGTGCTGAGAGAGTTATGTTCTCTGATTTGAGAAGTCCTTCAACTAAAGAAAACAATGGAGATAAAAgtatggggatttgcctcctacttgcctcccacacgtgatcccactgaaat Alignment from Exonerate_coding2genome AAGATAATAAATCACCATTTGAAACAAAGGCCATTGAAGTGAAGAGTGAGGTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGAAGT-CTCCAACTCAAGAAAACCATGGAGATAAAG CATACATGCAGGGTGGGCTGCCTCAACCCTTGATACCTTTCACTTTTCAGGTTGATTGCCCCCCAGGAGTT---AAACAAATAACAGTAGGTGCTGAGAGAGTTATGTTCTCTGATTTGAGAAGTCCTTCAACTAAAGAAAACAATGGAGATAAAAgtatggggatttgcctcctacttgcctcccacacgtgatcccactgaaat Alignment from GeneWise GTTGACTGTCCCCCGGGAGTTACTAAAGAAATAACAGCGGGTGCTGAGAGAGTAATGTTCTCTGATTTGAGA-AGTCTCCAACTCAAGAAAACCATGGAGATAAAG catacatgcagggtgggctgcctcaacccttgatacctttcacttttcagGTTGATTGCCCCCCAGGAGTT---AAACAAATAACAGTAGGTGCTGAGAGAGTTATGTTCTCTGATTTGAGAAGTCCTTCAACTAAAGAAAACAATGGAGATAAAAgtatggggatttgcctcctacttgcctcccacacgtgatcccactgaaat #### Tex40_ID1868_4 --> 0 - 1 Original Alignment CTGCCTCTGCCTCTGATGGAGCTCATGGAGACT-GAAGTTCTGGATATTCTCAAAAAAGCCCTCATCa atgactttagctccatgggattggttgattcctttggttgctttttctagCTGCCCCTCCCCCTAATGGAGTTCATGGAGAGTCGAAGTGTTGTATATTCTCAAAAAAGCCCTCATTagtaaggactataccctgcccctagcctccacaagcgactctgtgttggct Alignment from CESAR CTGCCTCTGCCTCTGATGGAGCTCATGGAGACT-GAAGTTCTGGATATTCTCAAAAAAGCCCTCATCa atgactttagctccatgggattggttgattcctttggttgctttttctagCTGCCCCTCCCCCTAATGGAGTTCATGGAGAGTCGAAGTGTTGTATATTCTCAAAAAAGCCCTCATTagtaaggactataccctgcccctagcctccacaagcgactctgtgttggct Alignment from Spaln_aa2Genome CTGCCTCTGCCTCTGATGGAGCTCATGGAGACT-GAAGTTCTGGATATTCTCAAAAAAGCCCTCATCA atgactttagctccatgggattggttgattcctttggttgctttttctagCTGCCCCTCCCCCTAATGGAGTTCATGGAGAGTcGAAGTGTTGTATATTCTCAAAAAAGCCCTCATTAgtaaggactataccctgcccctagcctccacaagcgactctgtgttggct Alignment from Spaln_nt2Genome CTGCCTCTGCCTCTGATGGAGCTCATGGAGACT-GAAGTTCTGGATATTCTCAAAAAAGCCCTCATCA atgactttagctccatgggattggttgattcctttggttgctttttctagCTGCCCCTCCCCCTAATGGAGTTCATGGAGAGTCGAAGTGTTGTATATTCTCAAAAAAGCCCTCATTAgtaaggactataccctgcccctagcctccacaagcgactctgtgttggct Alignment from Pairagon CTGCCTCTGCCTCTGATGGAGCTCATGGAGACT-GAAGTTCTGGATATTCTCAAAAAAGCCCTCATCA atgactttagctccatgggattggttgattcctttggttgctttttctagCTGCCCCTCCCCCTAATGGAGTTCATGGAGAGTCGAAGTGTTGTATATTCTCAAAAAAGCCCTCATTAgtaaggactataccctgcccctagcctccacaagcgactctgtgttggct Alignment from Exonerate_protein2genome CTGCCTCTGCCTCTGATGGAGCTCATGGAGACT-GAAGTTCTGGATATTCTCAAAAAAGCCCTCATCA atgactttagctccatgggattggttgattcctttggttgctttttctagCTGCCCCTCCCCCTAATGGAGTTCATGGAGAGTCGAAGTGTTGTATATTCTCAAAAAAGCCCTCATTAgtaaggactataccctgcccctagcctccacaagcgactctgtgttggct Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CTGCCTCTGCCTCTGATGGAGCTCATGGAG-ACTGAAGTTCTGGATATTCTCAAAAAAGCCCTCATCA atgactttagctccatgggattggttgattcctttggttgctttttctagCTGCCCCTCCCCCTAATGGAGTTCATGGAGAGTCGAAGTGTTGTATATTCTCAAAAAAGCCCTCATTAgtaaggactataccctgcccctagcctccacaagcgactctgtgttggct #### Tmem179b_ID2369_4 --> 1 - 0 Original Alignment cTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTG-CAGTTTTACTCCAACCTACATACTGCTGAA ccccatccctgctattcttcttacacttgtatgttgttatttgcttctagcTGCTCTGAAGCACAGAAGACTGCTTGGACACCTTCAGGAACTGCTGTGCCAGCTTTACTCCAACCTACATACTGCTGAAgtaagttgcaggtatctatcaagataaagcaacaagcttgattttgctca Alignment from CESAR cTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTG-CAGTTTTACTCCAACCTACATACTGCTGAA ccccatccctgctattcttcttacacttgtatgttgttatttgcttctagcTGCTCTGAAGCACAGAAGACTGCTTGGACACCTTCAGGAACTGCTGTGCCAGCTTTACTCCAACCTACATACTGCTGAAgtaagttgcaggtatctatcaagataaagcaacaagcttgattttgctca Alignment from Spaln_aa2Genome CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTG-CAGTTTTACTCCAACCTACATACTGCTGAA ccccatccctgctattcttcttacacttgtatgttgttatttgcttctagCTGCTCTGAAGCACAGAAGACTGCTTGGACACCTTCAGGAACTGCTGTGcCAGCTTTACTCCAACCTACATACTGCTGAAgtaagttgcaggtatctatcaagataaagcaacaagcttgattttgctca Alignment from Spaln_nt2Genome CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTG-CAGTTTTACTCCAACCTACATACTGCTGAA ccccatccctgctattcttcttacacttgtatgttgttatttgcttctagCTGCTCTGAAGCACAGAAGACTGCTTGGACACCTTCAGGAACTGCTGTGCCAGCTTTACTCCAACCTACATACTGCTGAAgtaagttgcaggtatctatcaagataaagcaacaagcttgattttgctca Alignment from Pairagon CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTG-CAGTTTTACTCCAACCTACATACTGCTGAA ccccatccctgctattcttcttacacttgtatgttgttatttgcttctagCTGCTCTGAAGCACAGAAGACTGCTTGGACACCTTCAGGAACTGCTGTGCCAGCTTTACTCCAACCTACATACTGCTGAAgtaagttgcaggtatctatcaagataaagcaacaagcttgattttgctca Alignment from Exonerate_protein2genome CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTG-CAGTTTTACTCCAACCTACATACTGCTGAA ccccatccctgctattcttcttacacttgtatgttgttatttgcttctagCTGCTCTGAAGCACAGAAGACTGCTTGGACACCTTCAGGAACTGCTGTGCCAGCTTTACTCCAACCTACATACTGCTGAAgtaagttgcaggtatctatcaagataaagcaacaagcttgattttgctca Alignment from Exonerate_coding2genome CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCTGTG-CAGTTTTACTCCAACCTACATACTGCTGAA ccccatccctgctattcttcttacacttgtatgttgttatttgcttctagCTGCTCTGAAGCACAGAAGACTGCTTGGACACCTTCAGGAACTGCTGTGCCAGCTTTACTCCAACCTACATACTGCTGAAgtaagttgcaggtatctatcaagataaagcaacaagcttgattttgctca Alignment from GeneWise CTGCTCTGAAGCCCAGAAAACCTCATGGACACCTTCAGGAACTGCT-GTGCAGTTTTACTCCAACCTACATACTGCTGAA ccccatccctgctattcttcttacacttgtatgttgttatttgcttctagCTGCTCTGAAGCACAGAAGACTGCTTGGACACCTTCAGGAACTGCTGTGCCAGCTTTACTCCAACCTACATACTGCTGAAgtaagttgcaggtatctatcaagataaagcaacaagcttgattttgctca #### Tmem179b_ID2370_3 --> 1 - 2 Original Alignment aGGTTCTATAGGGCTCCGAATT-GCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTag tgtggtaaattctattcaggctaatccatcatgtgctttctcctgtctagaGGCTCTATAGGGCTCCGGATTCGCTCTGGCCATTTCAGCTACAGCTATCTTCCTAATCTTAGTATCTGCCTGCATAGTTAGATTTGGCACGAATTCTTTCTGTAATTCCATCATCTCTTTGAATCTTACAATTaggtaacgtgagggacaggttcacttggaggtgcaagctaagttcatttcct Alignment from CESAR aGGTTCTATAGGGCTCCGAATT-GCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTag tgtggtaaattctattcaggctaatccatcatgtgctttctcctgtctagaGGCTCTATAGGGCTCCGGATTCGCTCTGGCCATTTCAGCTACAGCTATCTTCCTAATCTTAGTATCTGCCTGCATAGTTAGATTTGGCACGAATTCTTTCTGTAATTCCATCATCTCTTTGAATCTTACAATTaggtaacgtgagggacaggttcacttggaggtgcaagctaagttcatttcct Alignment from Spaln_aa2Genome AGGTTCTATAGGGCTCCGAATT-GCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG tgtggtaaattctattcaggctaatccatcatgtgctttctcctgtctagAGGCTCTATAGGGCTCCGGATTcGCTCTGGCCATTTCAGCTACAGCTATCTTCCTAATCTTAGTATCTGCCTGCATAGTTAGATTTGGCACGAATTCTTTCTGTAATTCCATCATCTCTTTGAATCTTACAATTAGgtaacgtgagggacaggttcacttggaggtgcaagctaagttcatttcct Alignment from Spaln_nt2Genome AGGTTCTATAGGGCTCCGAATT-GCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG tgtggtaaattctattcaggctaatccatcatgtgctttctcctgtctagAGGCTCTATAGGGCTCCGGATTCGCTCTGGCCATTTCAGCTACAGCTATCTTCCTAATCTTAGTATCTGCCTGCATAGTTAGATTTGGCACGAATTCTTTCTGTAATTCCATCATCTCTTTGAATCTTACAATTAGgtaacgtgagggacaggttcacttggaggtgcaagctaagttcatttcct Alignment from Pairagon AGGTTCTATAGGGCTCCGAATT-GCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG tgtggtaaattctattcaggctaatccatcatgtgctttctcctgtctagAGGCTCTATAGGGCTCCGGATTCGCTCTGGCCATTTCAGCTACAGCTATCTTCCTAATCTTAGTATCTGCCTGCATAGTTAGATTTGGCACGAATTCTTTCTGTAATTCCATCATCTCTTTGAATCTTACAATTAGgtaacgtgagggacaggttcacttggaggtgcaagctaagttcatttcct Alignment from Exonerate_protein2genome AGGTTCTATAGGGCTCCGAATT-GCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG tgtggtaaattctattcaggctaatccatcatgtgctttctcctgtctagAGGCTCTATAGGGCTCCGGATTCGCTCTGGCCATTTCAGCTACAGCTATCTTCCTAATCTTAGTATCTGCCTGCATAGTTAGATTTGGCACGAATTCTTTCTGTAATTCCATCATCTCTTTGAATCTTACAATTAGgtaacgtgagggacaggttcacttggaggtgcaagctaagttcatttcct Alignment from Exonerate_coding2genome AGGTTCTATAGGGCTCCGAATT-GCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG tgtggtaaattctattcaggctaatccatcatgtgctttctcctgtctagAGGCTCTATAGGGCTCCGGATTCGCTCTGGCCATTTCAGCTACAGCTATCTTCCTAATCTTAGTATCTGCCTGCATAGTTAGATTTGGCACGAATTCTTTCTGTAATTCCATCATCTCTTTGAATCTTACAATTAGgtaacgtgagggacaggttcacttggaggtgcaagctaagttcatttcct Alignment from GeneWise AGGTTCTATAGGGCTCCGAATT-GCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG tgtggtaaattctattcaggctaatccatcatgtgctttctcctgtctagAGGCTCTATAGGGCTCCGGATTCGCTCTGGCCATTTCAGCTACAGCTATCTTCCTAATCTTAGTATCTGCCTGCATAGTTAGATTTGGCACGAATTCTTTCTGTAATTCCATCATCTCTTTGAATCTTACAATTAGgtaacgtgagggacaggttcacttggaggtgcaagctaagttcatttcct #### Tmem180_ID9862_4 --> 1 - 0 Original Alignment cGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTGGGC-CAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG ctaggcctagactagcatgaacatgctaatgatttttttttcttatgcagtGTGTGTGAAGAGGAGCCACCAGTGGGTGGTGAGGAGGCAGGCAACATCACCTTGGGGCCAGTACCTCCGGCAACTGGCACACCACCAGAACTTCCTATGGTTTGTGGGTATGGATTTGGTGCAGgtacgacaacccatccctcacctccctgccagcctctgccatatccaaga Alignment from CESAR cGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTG-GGCCAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG ctaggcctagactagcatgaacatgctaatgatttttttttcttatgcagtGTGTGTGAAGAGGAGCCACCAGTGGGTGGTGAGGAGGCAGGCAACATCACCTTGGGGCCAGTACCTCCGGCAACTGGCACACCACCAGAACTTCCTATGGTTTGTGGGTATGGATTTGGTGCAGgtacgacaacccatccctcacctccctgccagcctctgccatatccaaga Alignment from Spaln_aa2Genome CGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTG-GGCCAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG ctaggcctagactagcatgaacatgctaatgatttttttttcttatgcagTGTGTGTGAAGAGGAGCCACCAGTGGGTGGTGAGGAGGCAGGCAACATCACCTTGgGGCCAGTACCTCCGGCAACTGGCACACCACCAGAACTTCCTATGGTTTGTGGGTATGGATTTGGTGCAGgtacgacaacccatccctcacctccctgccagcctctgccatatccaaga Alignment from Spaln_nt2Genome CGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTT-GGGCCAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG ctaggcctagactagcatgaacatgctaatgatttttttttcttatgcagTGTGTGTGAAGAGGAGCCACCAGTGGGTGGTGAGGAGGCAGGCAACATCACCTTGGGGCCAGTACCTCCGGCAACTGGCACACCACCAGAACTTCCTATGGTTTGTGGGTATGGATTTGGTGCAGgtacgacaacccatccctcacctccctgccagcctctgccatatccaaga Alignment from Pairagon CGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTT-GGGCCAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG ctaggcctagactagcatgaacatgctaatgatttttttttcttatgcagTGTGTGTGAAGAGGAGCCACCAGTGGGTGGTGAGGAGGCAGGCAACATCACCTTGGGGCCAGTACCTCCGGCAACTGGCACACCACCAGAACTTCCTATGGTTTGTGGGTATGGATTTGGTGCAGgtacgacaacccatccctcacctccctgccagcctctgccatatccaaga Alignment from Exonerate_protein2genome CGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTG-GGCCAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG ctaggcctagactagcatgaacatgctaatgatttttttttcttatgcagTGTGTGTGAAGAGGAGCCACCAGTGGGTGGTGAGGAGGCAGGCAACATCACCTTGGGGCCAGTACCTCCGGCAACTGGCACACCACCAGAACTTCCTATGGTTTGTGGGTATGGATTTGGTGCAGgtacgacaacccatccctcacctccctgccagcctctgccatatccaaga Alignment from Exonerate_coding2genome CGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACCTTG-GGCCAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG ctaggcctagactagcatgaacatgctaatgatttttttttcttatgcagTGTGTGTGAAGAGGAGCCACCAGTGGGTGGTGAGGAGGCAGGCAACATCACCTTGGGGCCAGTACCTCCGGCAACTGGCACACCACCAGAACTTCCTATGGTTTGTGGGTATGGATTTGGTGCAGgtacgacaacccatccctcacctccctgccagcctctgccatatccaaga Alignment from GeneWise CGTGTGTGAAGAGGAGCCGCCAGTGGGTGGTGAGGAAGCAGGCAACATCACC-TTGGGCCAGTACCTCCGGCAACTGGCACGCCACCAAAACTTCCTGTGGTTCGTGGGCATGGACCTGGTACAG ctaggcctagactagcatgaacatgctaatgatttttttttcttatgcagTGTGTGTGAAGAGGAGCCACCAGTGGGTGGTGAGGAGGCAGGCAACATCACCTTGGGGCCAGTACCTCCGGCAACTGGCACACCACCAGAACTTCCTATGGTTTGTGGGTATGGATTTGGTGCAGgtacgacaacccatccctcacctccctgccagcctctgccatatccaaga #### Trim8_ID9936_5 --> 1 - 1 Original Alignment gACCCAGACCTGCACGGGCAGC-AGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAg taagttaaagcacctcatcttccagaactggactgatctgtgatttccaggACCCAGACCTGCACAAGCAGTCAGCCTCTCTCCCCCTAAGATTGGCCACCTGAACTCCAATCTGTTTCTAAATGAGGTAACCAAGAAGGAGAAACAGTTGCGGAAAATGCTTGAAggtgagttgttaacgggccactgtacaggtgatgcccagtcagcaccccat Alignment from CESAR gACCCAGACCTGCACGGGCAGC-AGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAg taagttaaagcacctcatcttccagaactggactgatctgtgatttccaggACCCAGACCTGCACAAGCAGTCAGCCTCTCTCCCCCTAAGATTGGCCACCTGAACTCCAATCTGTTTCTAAATGAGGTAACCAAGAAGGAGAAACAGTTGCGGAAAATGCTTGAAggtgagttgttaacgggccactgtacaggtgatgcccagtcagcaccccat Alignment from Spaln_aa2Genome GACCCAGACCTGCACGGGCAGC-AGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG taagttaaagcacctcatcttccagaactggactgatctgtgatttccagGACCCAGACCTGCACAAGCAGTcAGCCTCTCTCCCCCTAAGATTGGCCACCTGAACTCCAATCTGTTTCTAAATGAGGTAACCAAGAAGGAGAAACAGTTGCGGAAAATGCTTGAAGgtgagttgttaacgggccactgtacaggtgatgcccagtcagcaccccat Alignment from Spaln_nt2Genome GACCCAGACCTGCACGGGCAG-CAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG taagttaaagcacctcatcttccagaactggactgatctgtgatttccagGACCCAGACCTGCACAAGCAGTCAGCCTCTCTCCCCCTAAGATTGGCCACCTGAACTCCAATCTGTTTCTAAATGAGGTAACCAAGAAGGAGAAACAGTTGCGGAAAATGCTTGAAGgtgagttgttaacgggccactgtacaggtgatgcccagtcagcaccccat Alignment from Pairagon GACCCAGACCTGCACGGGCAG-CAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG taagttaaagcacctcatcttccagaactggactgatctgtgatttccagGACCCAGACCTGCACAAGCAGTCAGCCTCTCTCCCCCTAAGATTGGCCACCTGAACTCCAATCTGTTTCTAAATGAGGTAACCAAGAAGGAGAAACAGTTGCGGAAAATGCTTGAAGgtgagttgttaacgggccactgtacaggtgatgcccagtcagcaccccat Alignment from Exonerate_protein2genome GACCCAGACCTGCACGGGCAGC-AGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG taagttaaagcacctcatcttccagaactggactgatctgtgatttccagGACCCAGACCTGCACAAGCAGTCAGCCTCTCTCCCCCTAAGATTGGCCACCTGAACTCCAATCTGTTTCTAAATGAGGTAACCAAGAAGGAGAAACAGTTGCGGAAAATGCTTGAAGgtgagttgttaacgggccactgtacaggtgatgcccagtcagcaccccat Alignment from Exonerate_coding2genome GACCCAGACCTGCACGGGCAGC-AGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG taagttaaagcacctcatcttccagaactggactgatctgtgatttccagGACCCAGACCTGCACAAGCAGTCAGCCTCTCTCCCCCTAAGATTGGCCACCTGAACTCCAATCTGTTTCTAAATGAGGTAACCAAGAAGGAGAAACAGTTGCGGAAAATGCTTGAAGgtgagttgttaacgggccactgtacaggtgatgcccagtcagcaccccat Alignment from GeneWise -----CAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG taagttaaagcacctcatcttccagaactggactgatctgtgatttccagGACCCAGACCTGCACAAGCAGTCAGCCTCTCTCCCCCTAAGATTGGCCACCTGAACTCCAATCTGTTTCTAAATGAGGTAACCAAGAAGGAGAAACAGTTGCGGAAAATGCTTGAAGgtgagttgttaacgggccactgtacaggtgatgcccagtcagcaccccat #### Trmt112_ID1861_2 --> 0 - 0 Original Alignment GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCG-CTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttactgtccttatctgtgttgaagGCCACTGAAGTCTGTATTAACCCTGTGGAATTTAACCCAGAGTTAGTGGCTCGTATGATCCCCAAAGTGGAGTGGGCAGCACCTTGTTCGGGCTGCAGACACTgttattgccttgttcttcccacagtatcttaggggtcagattctgaacct Alignment from CESAR GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCG-CTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttactgtccttatctgtgttgaagGCCACTGAAGTCTGTATTAACCCTGTGGAATTTAACCCAGAGTTAGTGGCTCGTATGATCCCCAAAGTGGAGTGGGCAGCACCTTGTTCGGGCTGCAGACACTgttattgccttgttcttcccacagtatcttaggggtcagattctgaacct Alignment from Spaln_aa2Genome GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCG-CTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttactgtccttatctgtgttgaagGCCACTGAAGTCTGTATTAACCCTGTGGAATTTAACCCAGAGTTAGTGGCTCGTATGATCCCCAAAGTGGAGTGGGCAGCAcCTTGTTCGGGCTGCAGACACTgttattgccttgttcttcccacagtatcttaggggtcagattctgaacct Alignment from Spaln_nt2Genome GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGC-TTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttactgtccttatctgtgttgaagGCCACTGAAGTCTGTATTAACCCTGTGGAATTTAACCCAGAGTTAGTGGCTCGTATGATCCCCAAAGTGGAGTGGGCAGCACCTTGTTCGGGCTGCAGACACTgttattgccttgttcttcccacagtatcttaggggtcagattctgaacct Alignment from Pairagon GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCG-CTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttactgtccttatctgtgttgaagGCCACTGAAGTCTGTATTAACCCTGTGGAATTTAACCCAGAGTTAGTGGCTCGTATGATCCCCAAAGTGGAGTGGGCAGCACCTTGTTCGGGCTGCAGACACTgttattgccttgttcttcccacagtatcttaggggtcagattctgaacct Alignment from Exonerate_protein2genome GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCG-CTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttactgtccttatctgtgttgaagGCCACTGAAGTCTGTATTAACCCTGTGGAATTTAACCCAGAGTTAGTGGCTCGTATGATCCCCAAAGTGGAGTGGGCAGCACCTTGTTCGGGCTGCAGACACTgttattgccttgttcttcccacagtatcttaggggtcagattctgaacct Alignment from Exonerate_coding2genome CTGCAGGCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCG-CTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttactgtccttatctgtgTTGAAGGCCACTGAAGTCTGTATTAACCCTGTGGAATTTAACCCAGAGTTAGTGGCTCGTATGATCCCCAAAGTGGAGTGGGCAGCACCTTGTTCGGGCTGCAGACACTgttattgccttgttcttcccacagtatcttaggggtcagattctgaacct Alignment from GeneWise GCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCG-GCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttactgtccttatctgtgttgaagGCCACTGAAGTCTGTATTAACCCTGTGGAATTTAACCCAGAGTTAGTGGCTCGTATGATCCCCAAAGTGGAGTGGGCAGCACCTTGTTCGGGCTGCAGACACTgttattgccttgttcttcccacagtatcttaggggtcagattctgaacct #### Trmt112_ID1862_3 --> 0 - 0 Original Alignment TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCAC-GACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG ttccggtaattaaagtctgggtgcttgaattcttctccttttccccttagTTGAACTTAGCCGCAGTGCCCAGAGAGCCAACTGAGGGCTATGAGCATCGATGAAACATTTTTGAGGGAGATGCGTCATGTGTTGCTTGAGgtcagtaacctggaccattgtgcctaggtgtccatggttgttactagcct Alignment from CESAR TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCAC-GACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG ttccggtaattaaagtctgggtgcttgaattcttctccttttccccttagTTGAACTTAGCCGCAGTGCCCAGAGAGCCAACTGAGGGCTATGAGCATCGATGAAACATTTTTGAGGGAGATGCGTCATGTGTTGCTTGAGgtcagtaacctggaccattgtgcctaggtgtccatggttgttactagcct Alignment from Spaln_aa2Genome TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCAC-GACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG ttccggtaattaaagtctgggtgcttgaattcttctccttttccccttagTTGAACTTAGCCGCAGTGCCCAGAGAGCCAACTGAGGGCTATGAGCATcGATGAAACATTTTTGAGGGAGATGCGTCATGTGTTGCTTGAGgtcagtaacctggaccattgtgcctaggtgtccatggttgttactagcct Alignment from Spaln_nt2Genome TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCA-CGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG ttccggtaattaaagtctgggtgcttgaattcttctccttttccccttagTTGAACTTAGCCGCAGTGCCCAGAGAGCCAACTGAGGGCTATGAGCATCGATGAAACATTTTTGAGGGAGATGCGTCATGTGTTGCTTGAGgtcagtaacctggaccattgtgcctaggtgtccatggttgttactagcct Alignment from Pairagon TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCA-CGACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG ttccggtaattaaagtctgggtgcttgaattcttctccttttccccttagTTGAACTTAGCCGCAGTGCCCAGAGAGCCAACTGAGGGCTATGAGCATCGATGAAACATTTTTGAGGGAGATGCGTCATGTGTTGCTTGAGgtcagtaacctggaccattgtgcctaggtgtccatggttgttactagcct Alignment from Exonerate_protein2genome TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCAC-GACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG ttccggtaattaaagtctgggtgcttgaattcttctccttttccccttagTTGAACTTAGCCGCAGTGCCCAGAGAGCCAACTGAGGGCTATGAGCATCGATGAAACATTTTTGAGGGAGATGCGTCATGTGTTGCTTGAGgtcagtaacctggaccattgtgcctaggtgtccatggttgttactagcct Alignment from Exonerate_coding2genome TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCAC-GACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG ttccggtaattaaagtctgggtgcttgaattcttctccttttccccttagTTGAACTTAGCCGCAGTGCCCAGAGAGCCAACTGAGGGCTATGAGCATCGATGAAACATTTTTGAGGGAGATGCGTCATGTGTTGCTTGAGgtcagtaacctggaccattgtgcctaggtgtccatggttgttactagcct Alignment from GeneWise TTAAACTTGGCCGAGGTACCCAAAGAGCCGACTGAAGGCTATGAGCAC-GACGAGACATTTTTGAGGAAGATGCACCACGTGTTGCTTGAG ttccggtaattaaagtctgggtgcttgaattcttctccttttccccttagTTGAACTTAGCCGCAGTGCCCAGAGAGCCAACTGAGGGCTATGAGCATCGATGAAACATTTTTGAGGGAGATGCGTCATGTGTTGCTTGAGgtcagtaacctggaccattgtgcctaggtgtccatggttgttactagcct #### Trpt1_ID1982_5 --> 2 - 1 Original Alignment gcATTCGTCCAAATTGTGAGGTG-GCGGTGTTCATCGATGGACCCCTAGCCCTCACAg tccctcgctatgcaggggaagaaagagctttcctttgtgtttattttcaggcATTCGACCAAATTGTGGTGTGCACAGTGTTTATTGATGGGCCACTAGCCCTCACAggtgagtatcaccccccagggctggctgcatcacactctcagagaatgtga Alignment from CESAR gcATTCGTCCAAATTGTGAGGTG-GCGGTGTTCATCGATGGACCCCTAGCCCTCACAg tccctcgctatgcaggggaagaaagagctttcctttgtgtttattttcaggcATTCGACCAAATTGTGGTGTGCACAGTGTTTATTGATGGGCCACTAGCCCTCACAggtgagtatcaccccccagggctggctgcatcacactctcagagaatgtga Alignment from Spaln_aa2Genome GCATTCGTCCAAATTGTGAGGTG-GCGGTGTTCATCGATGGACCCCTAGCCCTCACAG tccctcgctatgcaggggaagaaagagctttcctttgtgtttattttcagGCATTCGACCAAATTGTGGTGTGcACAGTGTTTATTGATGGGCCACTAGCCCTCACAGgtgagtatcaccccccagggctggctgcatcacactctcagagaatgtga Alignment from Spaln_nt2Genome GCATTCGTCCAAATTGTGAGGTGG-CGGTGTTCATCGATGGACCCCTAGCCCTCACAG tccctcgctatgcaggggaagaaagagctttcctttgtgtttattttcagGCATTCGACCAAATTGTGGTGTGCACAGTGTTTATTGATGGGCCACTAGCCCTCACAGgtgagtatcaccccccagggctggctgcatcacactctcagagaatgtga Alignment from Pairagon GCATTCGTCCAAATTGTGAGGTG-GCGGTGTTCATCGATGGACCCCTAGCCCTCACAG tccctcgctatgcaggggaagaaagagctttcctttgtgtttattttcagGCATTCGACCAAATTGTGGTGTGCACAGTGTTTATTGATGGGCCACTAGCCCTCACAGgtgagtatcaccccccagggctggctgcatcacactctcagagaatgtga Alignment from Exonerate_protein2genome GCATTCGTCCAAATTGTGAGGTG-GCGGTGTTCATCGATGGACCCCTAGCCCTCACAG tccctcgctatgcaggggaagaaagagctttcctttgtgtttattttcagGCATTCGACCAAATTGTGGTGTGCACAGTGTTTATTGATGGGCCACTAGCCCTCACAGgtgagtatcaccccccagggctggctgcatcacactctcagagaatgtga Alignment from Exonerate_coding2genome GCATTCGTCCAAATTGTGAGGTG-GCGGTGTTCATCGATGGACCCCTAGCCCTCACAG tccctcgctatgcaggggaagaaagagctttcctttgtgtttattttcagGCATTCGACCAAATTGTGGTGTGCACAGTGTTTATTGATGGGCCACTAGCCCTCACAGgtgagtatcaccccccagggctggctgcatcacactctcagagaatgtga Alignment from GeneWise GCATTCGTCCAAATTGTGAGGTG-GCGGTGTTCATCGATGGACCCCTAGCCCTCACAG tccctcgctatgcaggggaagaaagagctttcctttgtgtttattttcagGCATTCGACCAAATTGTGGTGTGCACAGTGTTTATTGATGGGCCACTAGCCCTCACAGgtgagtatcaccccccagggctggctgcatcacactctcagagaatgtga #### Tsga10ip_ID978_2 --> 0 - 2 Original Alignment ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGAC-GAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACag aggtggaacaaggtcggatcccccctccaatatttctcttacttcatcagACTAATGCCCGGCTTACAGGAAATCGGCGGTTCTCCCAGGTTTTATCTGCACTGGGGGTAGATCGATGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACaggtgagcggtgcaaggatctggtctaccatgtcgtacccgtgtattgtcct Alignment from CESAR ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGAC-GAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACag aggtggaacaaggtcggatcccccctccaatatttctcttacttcatcagACTAATGCCCGGCTTACAGGAAATCGGCGGTTCTCCCAGGTTTTATCTGCACTGGGGGTAGATCGATGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACaggtgagcggtgcaaggatctggtctaccatgtcgtacccgtgtattgtcct Alignment from Spaln_aa2Genome CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGAC-GAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG aggtggaacaaggtcggatcccccctccaatatttctcttacttcatCAGACTAATGCCCGGCTTACAGGAAATCGGCGGTTCTCCCAGGTTTTATCTGCACTGGGGGTAGATcGATGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACAGgtgagcggtgcaaggatctggtctaccatgtcgtacccgtgtattgtcct Alignment from Spaln_nt2Genome CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGA-CGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG aggtggaacaaggtcggatcccccctccaatatttctcttacttcatCAGACTAATGCCCGGCTTACAGGAAATCGGCGGTTCTCCCAGGTTTTATCTGCACTGGGGGTAGATCGATGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACAGgtgagcggtgcaaggatctggtctaccatgtcgtacccgtgtattgtcct Alignment from Pairagon CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGA-CGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG aggtggaacaaggtcggatcccccctccaatatttctcttacttcatCAGACTAATGCCCGGCTTACAGGAAATCGGCGGTTCTCCCAGGTTTTATCTGCACTGGGGGTAGATCGATGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACAGgtgagcggtgcaaggatctggtctaccatgtcgtacccgtgtattgtcct Alignment from Exonerate_protein2genome CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGAC-GAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG aggtggaacaaggtcggatcccccctccaatatttctcttacttcatCAGACTAATGCCCGGCTTACAGGAAATCGGCGGTTCTCCCAGGTTTTATCTGCACTGGGGGTAGATCGATGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACAGgtgagcggtgcaaggatctggtctaccatgtcgtacccgtgtattgtcct Alignment from Exonerate_coding2genome CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGAC-GAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG aggtggaacaaggtcggatcccccctccaatatttctcttacttcatCAGACTAATGCCCGGCTTACAGGAAATCGGCGGTTCTCCCAGGTTTTATCTGCACTGGGGGTAGATCGATGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACAGgtgagcggtgcaaggatctggtctaccatgtcgtacccgtgtattgtcct Alignment from GeneWise CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGAC-GAGGACCAGCTGCTGGCCGAGGCAGGCAATGCTGAGAGCACCCCCCGGAAGCACAG aggtggaacaaggtcggatcccccctccaatatttctcttacttcatCAGACTAATGCCCGGCTTACAGGAAATCGGCGGTTCTCCCAGGTTTTATCTGCACTGGGGGTAGATCGATGACCAGCTGCTAGCTGAGGCAGGTATTGCTGAAAGCACTCCCCGGAAGCACAGgtgagcggtgcaaggatctggtctaccatgtcgtacccgtgtattgtcct #### Ubxn1_ID2442_6 --> 1 - 0 Original Alignment aCAAAGGGTTCGAGAAAAA-ATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG tttgtcttgggtctatgtttgctttatagcgtgtactatgctgtctctagaCAGAGAACTCGAGAAAAGCATTGAAAGAGACAGAGCTGAAAGAGCCAAGAAAgtaccagatcacaaagttagtgcttacttgaggagggattctagttaact Alignment from CESAR aCAAAGGGTTCGAGAAAAA-ATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG tttgtcttgggtctatgtttgctttatagcgtgtactatgctgtctctagaCAGAGAACTCGAGAAAAGCATTGAAAGAGACAGAGCTGAAAGAGCCAAGAAAgtaccagatcacaaagttagtgcttacttgaggagggattctagttaact Alignment from Spaln_aa2Genome ACAAAGGGTTCGAGAAAAAATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG tttgtcttgggtctatgtttgctttatagcgtgtactatgctgtctctagacagAGAA---CTCGAGAAAAGCATTGAAAGAGACAGAGCTGAAAGAGCCAAGAAAgtaccagatcacaaagttagtgcttacttgaggagggattctagttaact Alignment from Spaln_nt2Genome ACAAAGGGTTCGAGAAAAA-ATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG tttgtcttgggtctatgtttgctttatagcgtgtactatgctgtctctagACAGAGAACTCGAGAAAAGCATTGAAAGAGACAGAGCTGAAAGAGCCAAGAAAgtaccagatcacaaagttagtgcttacttgaggagggattctagttaact Alignment from Pairagon ACAAAGGGTTCGAGAAAAA-ATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG tttgtcttgggtctatgtttgctttatagcgtgtactatgctgtctctagACAGAGAACTCGAGAAAAGCATTGAAAGAGACAGAGCTGAAAGAGCCAAGAAAgtaccagatcacaaagttagtgcttacttgaggagggattctagttaact Alignment from Exonerate_protein2genome ACAAAGGGTTCGAGAAAAA-ATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG tttgtcttgggtctatgtttgctttatagcgtgtactatgctgtctctagACAGAGAACTCGAGAAAAGCATTGAAAGAGACAGAGCTGAAAGAGCCAAGAAAgtaccagatcacaaagttagtgcttacttgaggagggattctagttaact Alignment from Exonerate_coding2genome tttgtcttgggtctatgtttgctttatagcgtgtactatgctgtctctagacagagaactcgagaaaagcattgaaagagacagagctgaaagagccaagaaagtaccagatcacaaagttagtgcttacttgaggagggattctagttaact Alignment from GeneWise ACAAAGGGTTCGAGAAAAAATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG tttgtcttgggtctatgtttgctttatagcgtgtactatgctgtctctagacagAGAA---CTCGAGAAAAGCATTGAAAGAGACAGAGCTGAAAGAGCCAAGAAAgtaccagatcacaaagttagtgcttacttgaggagggattctagttaact #### Ubxn1_ID2444_8 --> 0 - 1 Original Alignment GTTAGGCTGCCTGATGGGACTTCACTGACCCAGACTTTCCGGGCCCGGGAACAGCTGGCAGCTGTGAGGCTCTACGTGGAGCTTCACCGTGGGGAGGAGCCTGGACAGGACCAGGACCCTGTGCAGTTG-CTCAGTGGCTTCCCCAGACGGGCTTTCTCAGAGGCTGATATGGAACGGCCTCTGCAGGAACTGg caaggcttatcctacaaatgctcattgatactcttcccaccctgctctagGTTAGGCTGCCTGATGTCACTTCGTTGACCCAGACTTTTCGGATCCGGGAACAGCTGGCAGCTGTGAGGCTTTATGTGGAGCTTCATCATGGTGAGGAGCCTGGGCAGGATCAGGACCCAGTGCAGTTGCCTCAGTGGCTTCCCCAGACGGGCTTTCTCTGAAGCTGATATGGAGCGGCCCTTGCAGAAACTGggtaagttatgtacggcccttctccatttatgcgcattttcctggggtgca Alignment from CESAR GTTAGGCTGCCTGATGGGACTTCACTGACCCAGACTTTCCGGGCCCGGGAACAGCTGGCAGCTGTGAGGCTCTACGTGGAGCTTCACCGTGGGGAGGAGCCTGGACAGGACCAGGACCCTGTGCAGTTG-CTCAGTGGCTTCCCCAGACGGGCTTTCTCAGAGGCTGATATGGAACGGCCTCTGCAGGAACTGg caaggcttatcctacaaatgctcattgatactcttcccaccctgctctagGTTAGGCTGCCTGATGTCACTTCGTTGACCCAGACTTTTCGGATCCGGGAACAGCTGGCAGCTGTGAGGCTTTATGTGGAGCTTCATCATGGTGAGGAGCCTGGGCAGGATCAGGACCCAGTGCAGTTGCCTCAGTGGCTTCCCCAGACGGGCTTTCTCTGAAGCTGATATGGAGCGGCCCTTGCAGAAACTGggtaagttatgtacggcccttctccatttatgcgcattttcctggggtgca Alignment from Spaln_aa2Genome GTTAGGCTGCCTGATGGGACTTCACTGACCCAGACTTTCCGGGCCCGGGAACAGCTGGCAGCTGTGAGGCTCTACGTGGAGCTTCACCGTGGGGAGGAGCCTGGACAGGACCAGGACCCTGTGCAGTTG-CTCAGTGGCTTCCCCAGACGGGCTTTCTCAGAGGCTGATATGGAACGGCCTCTGCAGGAACTGG caaggcttatcctacaaatgctcattgatactcttcccaccctgctctagGTTAGGCTGCCTGATGTCACTTCGTTGACCCAGACTTTTCGGATCCGGGAACAGCTGGCAGCTGTGAGGCTTTATGTGGAGCTTCATCATGGTGAGGAGCCTGGGCAGGATCAGGACCCAGTGCAGTTGcCTCAGTGGCTTCCCCAGACGGGCTTTCTCTGAAGCTGATATGGAGCGGCCCTTGCAGAAACTGGgtaagttatgtacggcccttctccatttatgcgcattttcctggggtgca Alignment from Spaln_nt2Genome GTTAGGCTGCCTGATGGGACTTCACTGACCCAGACTTTCCGGGCCCGGGAACAGCTGGCAGCTGTGAGGCTCTACGTGGAGCTTCACCGTGGGGAGGAGCCTGGACAGGACCAGGACCCTGTGCAGTTG-CTCAGTGGCTTCCCCAGACGGGCTTTCTCAGAGGCTGATATGGAACGGCCTCTGCAGGAACTGG caaggcttatcctacaaatgctcattgatactcttcccaccctgctctagGTTAGGCTGCCTGATGTCACTTCGTTGACCCAGACTTTTCGGATCCGGGAACAGCTGGCAGCTGTGAGGCTTTATGTGGAGCTTCATCATGGTGAGGAGCCTGGGCAGGATCAGGACCCAGTGCAGTTGCCTCAGTGGCTTCCCCAGACGGGCTTTCTCTGAAGCTGATATGGAGCGGCCCTTGCAGAAACTGGgtaagttatgtacggcccttctccatttatgcgcattttcctggggtgca Alignment from Pairagon GTTAGGCTGCCTGATGGGACTTCACTGACCCAGACTTTCCGGGCCCGGGAACAGCTGGCAGCTGTGAGGCTCTACGTGGAGCTTCACCGTGGGGAGGAGCCTGGACAGGACCAGGACCCTGTGCAGTTG-CTCAGTGGCTTCCCCAGACGGGCTTTCTCAGAGGCTGATATGGAACGGCCTCTGCAGGAACTGG caaggcttatcctacaaatgctcattgatactcttcccaccctgctctagGTTAGGCTGCCTGATGTCACTTCGTTGACCCAGACTTTTCGGATCCGGGAACAGCTGGCAGCTGTGAGGCTTTATGTGGAGCTTCATCATGGTGAGGAGCCTGGGCAGGATCAGGACCCAGTGCAGTTGCCTCAGTGGCTTCCCCAGACGGGCTTTCTCTGAAGCTGATATGGAGCGGCCCTTGCAGAAACTGGgtaagttatgtacggcccttctccatttatgcgcattttcctggggtgca Alignment from Exonerate_protein2genome GTTAGGCTGCCTGATGGGACTTCACTGACCCAGACTTTCCGGGCCCGGGAACAGCTGGCAGCTGTGAGGCTCTACGTGGAGCTTCACCGTGGGGAGGAGCCTGGACAGGACCAGGACCCTGTGCAGTTG-CTCAGTGGCTTCCCCAGACGGGCTTTCTCAGAGGCTGATATGGAACGGCCTCTGCAGGAACTGG caaggcttatcctacaaatgctcattgatactcttcccaccctgctctagGTTAGGCTGCCTGATGTCACTTCGTTGACCCAGACTTTTCGGATCCGGGAACAGCTGGCAGCTGTGAGGCTTTATGTGGAGCTTCATCATGGTGAGGAGCCTGGGCAGGATCAGGACCCAGTGCAGTTGCCTCAGTGGCTTCCCCAGACGGGCTTTCTCTGAAGCTGATATGGAGCGGCCCTTGCAGAAACTGGgtaagttatgtacggcccttctccatttatgcgcattttcctggggtgca Alignment from Exonerate_coding2genome GTTAGGCTGCCTGATGGGACTTCACTGACCCAGACTTTCCGGGCCCGGGAACAGCTGGCAGCTGTGAGGCTCTACGTGGAGCTTCACCGTGGGGAGGAGCCTGGACAGGACCAGGACCCTGTGCAGTTG-CTCAGTGGCTTCCCCAGACGGGCTTTCTCAGAGGCTGATATGGAACGGCCTCTGCAGGAACTGG caaggcttatcctacaaatgctcattgatactcttcccaccctgctctagGTTAGGCTGCCTGATGTCACTTCGTTGACCCAGACTTTTCGGATCCGGGAACAGCTGGCAGCTGTGAGGCTTTATGTGGAGCTTCATCATGGTGAGGAGCCTGGGCAGGATCAGGACCCAGTGCAGTTGCCTCAGTGGCTTCCCCAGACGGGCTTTCTCTGAAGCTGATATGGAGCGGCCCTTGCAGAAACTGGgtaagttatgtacggcccttctccatttatgcgcattttcctggggtgca Alignment from GeneWise GTTAGGCTGCCTGATGGGACTTCACTGACCCAGACTTTCCGGGCCCGGGAACAGCTGGCAGCTGTGAGGCTCTACGTGGAGCTTCACCGTGGGGAGGAGCCTGGACAGGACCAGGACCCTGTGCAGTTG-CTCAGTGGCTTCCCCAGACGGGCTTTCTCAGAGGCTGATATGGAACGGCCTCTGCAGGAACTGG caaggcttatcctacaaatgctcattgatactcttcccaccctgctctagGTTAGGCTGCCTGATGTCACTTCGTTGACCCAGACTTTTCGGATCCGGGAACAGCTGGCAGCTGTGAGGCTTTATGTGGAGCTTCATCATGGTGAGGAGCCTGGGCAGGATCAGGACCCAGTGCAGTTGCCTCAGTGGCTTCCCCAGACGGGCTTTCTCTGAAGCTGATATGGAGCGGCCCTTGCAGAAACTGGgtaagttatgtacggcccttctccatttatgcgcattttcctggggtgca #### Unc93b1_ID214_5 --> 1 - 0 Original Alignment gATGTCCCAGAAGTACTATGAATACTCCCACTAC-AAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaaaaactgtcataggaggcaggcttcatacctttcttctcttgcaggATGTCCCAGAAGTACTACGAATATTCACATTACCAAGGAGCAGGATGACCAGGGACCTCAACAACGCCCACCACGTGGACCCCACACGCCTTTTCTCCTGGTTTTCCAGGCTAACTTTTATAGCTTCTTGCATgtgagcgtgctacaggaagccttgtggggggtgggaggtggttatagcct Alignment from CESAR gATGTCCCAGAAGTACTATGAATACTCCCACTAC-AAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaaaaactgtcataggaggcaggcttcatacctttcttctcttgcaggATGTCCCAGAAGTACTACGAATATTCACATTACCAAGGAGCAGGATGACCAGGGACCTCAACAACGCCCACCACGTGGACCCCACACGCCTTTTCTCCTGGTTTTCCAGGCTAACTTTTATAGCTTCTTGCATgtgagcgtgctacaggaagccttgtggggggtgggaggtggttatagcct Alignment from Spaln_aa2Genome GATGTCCCAGAAGTACTATGAATACTCCCACTAC-AAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaaaaactgtcataggaggcaggcttcatacctttcttctcttgcagGATGTCCCAGAAGTACTACGAATATTCACATTACcAAGGAGCAGGATGACCAGGGACCTCAACAACGCCCACCACGTGGACCCCACACGCCTTTTCTCCTGGTTTTCCAGGCTAACTTTTATAGCTTCTTGCATgtgagcgtgctacaggaagccttgtggggggtgggaggtggttatagcct Alignment from Spaln_nt2Genome GATGTCCCAGAAGTACTATGAATACTCCCACTAC-AAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaaaaactgtcataggaggcaggcttcatacctttcttctcttgcagGATGTCCCAGAAGTACTACGAATATTCACATTACCAAGGAGCAGGATGACCAGGGACCTCAACAACGCCCACCACGTGGACCCCACACGCCTTTTCTCCTGGTTTTCCAGGCTAACTTTTATAGCTTCTTGCATgtgagcgtgctacaggaagccttgtggggggtgggaggtggttatagcct Alignment from Pairagon GATGTCCCAGAAGTACTATGAATACTCCCACTA-CAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaaaaactgtcataggaggcaggcttcatacctttcttctcttgcagGATGTCCCAGAAGTACTACGAATATTCACATTACCAAGGAGCAGGATGACCAGGGACCTCAACAACGCCCACCACGTGGACCCCACACGCCTTTTCTCCTGGTTTTCCAGGCTAACTTTTATAGCTTCTTGCATgtgagcgtgctacaggaagccttgtggggggtgggaggtggttatagcct Alignment from Exonerate_protein2genome GATGTCCCAGAAGTACTATGAATACTCCCACTAC-AAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaaaaactgtcataggaggcaggcttcatacctttcttctcttgcagGATGTCCCAGAAGTACTACGAATATTCACATTACCAAGGAGCAGGATGACCAGGGACCTCAACAACGCCCACCACGTGGACCCCACACGCCTTTTCTCCTGGTTTTCCAGGCTAACTTTTATAGCTTCTTGCATgtgagcgtgctacaggaagccttgtggggggtgggaggtggttatagcct Alignment from Exonerate_coding2genome GATGTCCCAGAAGTACTATGAATACTCCCACTAC-AAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaaaaactgtcataggaggcaggcttcatacctttcttctcttgcagGATGTCCCAGAAGTACTACGAATATTCACATTACCAAGGAGCAGGATGACCAGGGACCTCAACAACGCCCACCACGTGGACCCCACACGCCTTTTCTCCTGGTTTTCCAGGCTAACTTTTATAGCTTCTTGCATgtgagcgtgctacaggaagccttgtggggggtgggaggtggttatagcct Alignment from GeneWise GATGTCCCAGAAGTACTATGAATACTCCCACTAC-AAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC tgagaaaaactgtcataggaggcaggcttcatacctttcttctcttgcagGATGTCCCAGAAGTACTACGAATATTCACATTACCAAGGAGCAGGATGACCAGGGACCTCAACAACGCCCACCACGTGGACCCCACACGCCTTTTCTCCTGGTTTTCCAGGCTAACTTTTATAGCTTCTTGCATgtgagcgtgctacaggaagccttgtggggggtgggaggtggttatagcct #### Unc93b1_ID215_6 --> 0 - 1 Original Alignment TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTAC-CTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCg tatccccctgcaaggtacctgcctaatatgtgctttgcctctgtgtccagTTGAGCTTCACATTTGCTCAGCTGCCAATGATTTACTTCCTCAACAATTATCTTGTATGACTTGAACCATACGCTCATCAATGTACAGATATGTggtatgtttgtgggaacctagtagcttggcctttgtttcatacgcagtcaa Alignment from CESAR TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTAC-CTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCg tatccccctgcaaggtacctgcctaatatgtgctttgcctctgtgtccagTTGAGCTTCACATTTGCTCAGCTGCCAATGATTTACTTCCTCAACAATTATCTTGTATGACTTGAACCATACGCTCATCAATGTACAGATATGTggtatgtttgtgggaacctagtagcttggcctttgtttcatacgcagtcaa Alignment from Spaln_aa2Genome TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTG-TATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG tatccccctgcaaggtacctgcctaatatgtgctttgcctctgtgtccagTTGAGCTTCACATTTGCTCAGCTGCCAATGATTTACTTCCTCAACAATTATCTTgTATGACTTGAACCATACGCTCATCAATGTACAGATATGTGgtatgtttgtgggaacctagtagcttggcctttgtttcatacgcagtcaa Alignment from Spaln_nt2Genome TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCT-GTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG tatccccctgcaaggtacctgcctaatatgtgctttgcctctgtgtccagTTGAGCTTCACATTTGCTCAGCTGCCAATGATTTACTTCCTCAACAATTATCTTGTATGACTTGAACCATACGCTCATCAATGTACAGATATGTGgtatgtttgtgggaacctagtagcttggcctttgtttcatacgcagtcaa Alignment from Pairagon TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTA-CCTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG tatccccctgcaaggtacctgcctaatatgtgctttgcctctgtgtccagTTGAGCTTCACATTTGCTCAGCTGCCAATGATTTACTTCCTCAACAATTATCTTGTATGACTTGAACCATACGCTCATCAATGTACAGATATGTGgtatgtttgtgggaacctagtagcttggcctttgtttcatacgcagtcaa Alignment from Exonerate_protein2genome TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTAC-CTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG tatccccctgcaaggtacctgcctaatatgtgctttgcctctgtgtccagTTGAGCTTCACATTTGCTCAGCTGCCAATGATTTACTTCCTCAACAATTATCTTGTATGACTTGAACCATACGCTCATCAATGTACAGATATGTGgtatgtttgtgggaacctagtagcttggcctttgtttcatacgcagtcaa Alignment from Exonerate_coding2genome TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTAC-CTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG tatccccctgcaaggtacctgcctaatatgtgctttgcctctgtgtccagTTGAGCTTCACATTTGCTCAGCTGCCAATGATTTACTTCCTCAACAATTATCTTGTATGACTTGAACCATACGCTCATCAATGTACAGATATGTGgtatgtttgtgggaacctagtagcttggcctttgtttcatacgcagtcaa Alignment from GeneWise TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTAC-CTGTATGACCTGAACCACACACTGATCAACGTGCAGAGCTGCG tatccccctgcaaggtacctgcctaatatgtgctttgcctctgtgtccagTTGAGCTTCACATTTGCTCAGCTGCCAATGATTTACTTCCTCAACAATTATCTTGTATGACTTGAACCATACGCTCATCAATGTACAGATATGTGgtatgtttgtgggaacctagtagcttggcctttgtttcatacgcagtcaa #### Vegfb_ID1955_5 --> 1 - 2 Original Alignment aCCAAAAAAAAAGGAG-AGTGCTGTGAAGCCAGACag tacacaagtgtgagaagtttgactctgttgacctagccttgtgtccacagaCCTAAAAAGAAGGAGCACTACTGTTAGGCCCGACcggtgcctgttttccatccctcaatgcttgttagtgagagggagaccatttg Alignment from CESAR aCCAAAAAAAAAGGAG-AGTGCTGTGAAGCCAGACag tacacaagtgtgagaagtttgactctgttgacctagccttgtgtccacagaCCTAAAAAGAAGGAGCACTACTGTTAGGCCCGACcggtgcctgttttccatccctcaatgcttgttagtgagagggagaccatttg Alignment from Spaln_aa2Genome ACCAAAAAAAAAGGAG-AGTGCTGTGAAGCCAGACAG tacacaagtgtgagaagtttgactctgttgacctagccttgtgtccacagACCTAAAAAGAAGGAGcACTACTGTTAGGCCCGACCGgtgcctgttttccatccctcaatgcttgttagtgagagggagaccatttg Alignment from Spaln_nt2Genome ACCAAAAAAAAAGGAG-AGTGCTGTGAAGCCAGACAG tacacaagtgtgagaagtttgactctgttgacctagccttgtgtccacagACCTAAAAAGAAGGAGCACTACTGTTAGGCCCGACCGgtgcctgttttccatccctcaatgcttgttagtgagagggagaccatttg Alignment from Pairagon ACCAAAAAAAAAGGAG-AGTGCTGTGAAGCCAGACAG tacacaagtgtgagaagtttgactctgttgacctagccttgtgtccacagACCTAAAAAGAAGGAGCACTACTGTTAGGCCCGACCGgtgcctgttttccatccctcaatgcttgttagtgagagggagaccatttg Alignment from Exonerate_protein2genome ACCAAAAAAAAAGGAG-AGTGCTGTGAAGCCAGACAG tacacaagtgtgagaagtttgactctgttgacctagccttgtgtccacagACCTAAAAAGAAGGAGCACTACTGTTAGGCCCGACCGgtgcctgttttccatccctcaatgcttgttagtgagagggagaccatttg Alignment from Exonerate_coding2genome tacacaagtgtgagaagtttgactctgttgacctagccttgtgtccacagacctaaaaagaaggagcactactgttaggcccgaccggtgcctgttttccatccctcaatgcttgttagtgagagggagaccatttg Alignment from GeneWise tacacaagtgtgagaagtttgactctgttgacctagccttgtgtccacagacctaaaaagaaggagcactactgttaggcccgaccggtgcctgttttccatccctcaatgcttgttagtgagagggagaccatttg #### Vegfb_ID1957_3 --> 2 - 0 Original Alignment tgGTGCCATGGATAGACGTTTAT-GCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG gaaatgaaaaggtggaaaggtttcagaggctaaatttgcttcctccccagtgGTGCCATGGATAGATGTCTATCGCACGTGCTGCATGCCAGCCGAGGGAGGTGGTGGCACCACTGAGTATGAAACTTATGGGCAATATAGTCAAACAGCTGGTGCCCAGCTGTGTAGTAACTGTGCAGCGCTGTAGTGGCTGCTGCCCTGATGATGGCCTGGAATGTGTGGCTGCAGAGCAACATCAAGTCCGAATGCAAgtactcgatcaaatatgagtgcaagtacttagaagtacgggtctggtgta Alignment from CESAR tgGTGCCATGGATAGACGTTTAT-GCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG gaaatgaaaaggtggaaaggtttcagaggctaaatttgcttcctccccagtgGTGCCATGGATAGATGTCTATCGCACGTGCTGCATGCCAGCCGAGGGAGGTGGTGGCACCACTGAGTATGAAACTTATGGGCAATATAGTCAAACAGCTGGTGCCCAGCTGTGTAGTAACTGTGCAGCGCTGTAGTGGCTGCTGCCCTGATGATGGCCTGGAATGTGTGGCTGCAGAGCAACATCAAGTCCGAATGCAAgtactcgatcaaatatgagtgcaagtacttagaagtacgggtctggtgta Alignment from Spaln_aa2Genome TGGTGCCATGGATAGACGTTTAT-GCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG gaaatgaaaaggtggaaaggtttcagaggctaaatttgcttcctccccagTGGTGCCATGGATAGATGTCTATcGCACGTGCTGCATGCCAGCCGAGGGAGGTGGTGGCACCACTGAGTATGAAACTTATGGGCAATATAGTCAAACAGCTGGTGCCCAGCTGTGTAGTAACTGTGCAGCGCTGTAGTGGCTGCTGCCCTGATGATGGCCTGGAATGTGTGGCTGCAGAGCAACATCAAGTCCGAATGCAAgtactcgatcaaatatgagtgcaagtacttagaagtacgggtctggtgta Alignment from Spaln_nt2Genome TGGTGCCATGGATAGACGTTTAT-GCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG gaaatgaaaaggtggaaaggtttcagaggctaaatttgcttcctccccagTGGTGCCATGGATAGATGTCTATCGCACGTGCTGCATGCCAGCCGAGGGAGGTGGTGGCACCACTGAGTATGAAACTTATGGGCAATATAGTCAAACAGCTGGTGCCCAGCTGTGTAGTAACTGTGCAGCGCTGTAGTGGCTGCTGCCCTGATGATGGCCTGGAATGTGTGGCTGCAGAGCAACATCAAGTCCGAATGCAAgtactcgatcaaatatgagtgcaagtacttagaagtacgggtctggtgta Alignment from Pairagon TGGTGCCATGGATAGACGTTTAT-GCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG gaaatgaaaaggtggaaaggtttcagaggctaaatttgcttcctccccagTGGTGCCATGGATAGATGTCTATCGCACGTGCTGCATGCCAGCCGAGGGAGGTGGTGGCACCACTGAGTATGAAACTTATGGGCAATATAGTCAAACAGCTGGTGCCCAGCTGTGTAGTAACTGTGCAGCGCTGTAGTGGCTGCTGCCCTGATGATGGCCTGGAATGTGTGGCTGCAGAGCAACATCAAGTCCGAATGCAAgtactcgatcaaatatgagtgcaagtacttagaagtacgggtctggtgta Alignment from Exonerate_protein2genome TGGTGCCATGGATAGACGTTTAT-GCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG gaaatgaaaaggtggaaaggtttcagaggctaaatttgcttcctccccagTGGTGCCATGGATAGATGTCTATCGCACGTGCTGCATGCCAGCCGAGGGAGGTGGTGGCACCACTGAGTATGAAACTTATGGGCAATATAGTCAAACAGCTGGTGCCCAGCTGTGTAGTAACTGTGCAGCGCTGTAGTGGCTGCTGCCCTGATGATGGCCTGGAATGTGTGGCTGCAGAGCAACATCAAGTCCGAATGCAAgtactcgatcaaatatgagtgcaagtacttagaagtacgggtctggtgta Alignment from Exonerate_coding2genome TGGTGCCATGGATAGACGTTTAT-GCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG gaaatgaaaaggtggaaaggtttcagaggctaaatttgcttcctccccagTGGTGCCATGGATAGATGTCTATCGCACGTGCTGCATGCCAGCCGAGGGAGGTGGTGGCACCACTGAGTATGAAACTTATGGGCAATATAGTCAAACAGCTGGTGCCCAGCTGTGTAGTAACTGTGCAGCGCTGTAGTGGCTGCTGCCCTGATGATGGCCTGGAATGTGTGGCTGCAGAGCAACATCAAGTCCGAATGCAAgtactcgatcaaatatgagtgcaagtacttagaagtacgggtctggtgta Alignment from GeneWise TGGTGCCATGGATAGACGTTTAT-GCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTG---ACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG gaaatgaaaaggtggaaaggtttcagaggctaaatttgcttcctccccagTGGTGCCATGGATAGATGTCTATCGCACGTGCTGCATGCCAGCCGAGGGAGGTGGTGGCACCACTGAGTATGAAACTTATGGGCAATATAGTCAAACAGCTGGTGCCCAGCTGTGTAGTAACTGTGCAGCGCTGTAGTGGCTGCTGCCCTGATGATGGCCTGGAATGTGTGGCTGCAGAGCAACATCAAGTCCGAATGCAAgtactcgatcaaatatgagtgcaagtacttagaagtacgggtctggtgta #### Vldlr_ID5807_6 --> 2 - 1 Original Alignment ctTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGAT-GGCTCTGATGAAGTCAACTGCAAAAACg cagaagtgggcacttgcctgcttctttcgttcagttttctcttcctgcagctTCTCAAACCTGCAGACCTGATCATTTTGAATGTGAAGATGGTACTTGCATCCATGGTAGCAGACAATGCAATGGCATCCAGGCTTGTGTTGATCGGATCTGATGAAGTAAACTGTAGAAACagtgagtgtctctttttgattattgggactgcacctctgccacaagagtga Alignment from CESAR ctTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGAT-GGCTCTGATGAAGTCAACTGCAAAAACg cagaagtgggcacttgcctgcttctttcgttcagttttctcttcctgcagctTCTCAAACCTGCAGACCTGATCATTTTGAATGTGAAGATGGTACTTGCATCCATGGTAGCAGACAATGCAATGGCATCCAGGCTTGTGTTGATCGGATCTGATGAAGTAAACTGTAGAAACagtgagtgtctctttttgattattgggactgcacctctgccacaagagtga Alignment from Spaln_aa2Genome CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGAT-GGCTCTGATGAAGTCAACTGCAAAAACG cagaagtgggcacttgcctgcttctttcgttcagttttctcttcctgcagCTTCTCAAACCTGCAGACCTGATCATTTTGAATGTGAAGATGGTACTTGCATCCATGGTAGCAGACAATGCAATGGCATCCAGGCTTGTGTTGATcGGATCTGATGAAGTAAACTGTAGAAACAgtgagtgtctctttttgattattgggactgcacctctgccacaagagtga Alignment from Spaln_nt2Genome CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGAT-GGCTCTGATGAAGTCAACTGCAAAAACG cagaagtgggcacttgcctgcttctttcgttcagttttctcttcctgcagCTTCTCAAACCTGCAGACCTGATCATTTTGAATGTGAAGATGGTACTTGCATCCATGGTAGCAGACAATGCAATGGCATCCAGGCTTGTGTTGATCGGATCTGATGAAGTAAACTGTAGAAACAgtgagtgtctctttttgattattgggactgcacctctgccacaagagtga Alignment from Pairagon CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGAT-GGCTCTGATGAAGTCAACTGCAAAAACG cagaagtgggcacttgcctgcttctttcgttcagttttctcttcctgcagCTTCTCAAACCTGCAGACCTGATCATTTTGAATGTGAAGATGGTACTTGCATCCATGGTAGCAGACAATGCAATGGCATCCAGGCTTGTGTTGATCGGATCTGATGAAGTAAACTGTAGAAACAgtgagtgtctctttttgattattgggactgcacctctgccacaagagtga Alignment from Exonerate_protein2genome CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGAT-GGCTCTGATGAAGTCAACTGCAAAAACG cagaagtgggcacttgcctgcttctttcgttcagttttctcttcctgcagCTTCTCAAACCTGCAGACCTGATCATTTTGAATGTGAAGATGGTACTTGCATCCATGGTAGCAGACAATGCAATGGCATCCAGGCTTGTGTTGATCGGATCTGATGAAGTAAACTGTAGAAACAgtgagtgtctctttttgattattgggactgcacctctgccacaagagtga Alignment from Exonerate_coding2genome CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGAT-GGCTCTGATGAAGTCAACTGCAAAAACG cagaagtgggcacttgcctgcttctttcgttcagttttctcttcctgcagCTTCTCAAACCTGCAGACCTGATCATTTTGAATGTGAAGATGGTACTTGCATCCATGGTAGCAGACAATGCAATGGCATCCAGGCTTGTGTTGATCGGATCTGATGAAGTAAACTGTAGAAACAgtgagtgtctctttttgattattgggactgcacctctgccacaagagtga Alignment from GeneWise CTTCTCGAACCTGCCGACCTGACCAGTTTGAATGTGAAGATGGTAGCTGTATCCACGGCAGCAGGCAATGCAATGGCATCCGAGACTGTGTTGAT-GGCTCTGATGAAGTCAACTGCAAAAACG cagaagtgggcacttgcctgcttctttcgttcagttttctcttcctgcagCTTCTCAAACCTGCAGACCTGATCATTTTGAATGTGAAGATGGTACTTGCATCCATGGTAGCAGACAATGCAATGGCATCCAGGCTTGTGTTGATCGGATCTGATGAAGTAAACTGTAGAAACAgtgagtgtctctttttgattattgggactgcacctctgccacaagagtga #### Vldlr_ID5810_9 --> 2 - 1 Original Alignment atATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCC-ACTGGCGTGTGCAAGGCAGTAg aatgggatatagagaactaagaattgagttcaaatggtgggctcctatagatATTGATGAATGCCAAAACCCAGGGATCTGCGGTCAGATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTACCAAATGGAACTGGCCCACTGGCGTGTGCAAGGCAATAggtgcctagggaacctaccaatgctataaagctctgagtgtagcctaccat Alignment from CESAR atATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCC-ACTGGCGTGTGCAAGGCAGTAg aatgggatatagagaactaagaattgagttcaaatggtgggctcctatagatATTGATGAATGCCAAAACCCAGGGATCTGCGGTCAGATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTACCAAATGGAACTGGCCCACTGGCGTGTGCAAGGCAATAggtgcctagggaacctaccaatgctataaagctctgagtgtagcctaccat Alignment from Spaln_aa2Genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCC-ACTGGCGTGTGCAAGGCAGTAG aatgggatatagagaactaagaattgagttcaaatggtgggctcctatagATATTGATGAATGCCAAAACCCAGGGATCTGCGGTCAGATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTACCAAATGGAACTGGCCcACTGGCGTGTGCAAGGCAATAGgtgcctagggaacctaccaatgctataaagctctgagtgtagcctaccat Alignment from Spaln_nt2Genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGC-CACTGGCGTGTGCAAGGCAGTAG aatgggatatagagaactaagaattgagttcaaatggtgggctcctatagATATTGATGAATGCCAAAACCCAGGGATCTGCGGTCAGATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTACCAAATGGAACTGGCCCACTGGCGTGTGCAAGGCAATAGgtgcctagggaacctaccaatgctataaagctctgagtgtagcctaccat Alignment from Pairagon ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTG-CCACTGGCGTGTGCAAGGCAGTAG aatgggatatagagaactaagaattgagttcaaatggtgggctcctatagATATTGATGAATGCCAAAACCCAGGGATCTGCGGTCAGATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTACCAAATGGAACTGGCCCACTGGCGTGTGCAAGGCAATAGgtgcctagggaacctaccaatgctataaagctctgagtgtagcctaccat Alignment from Exonerate_protein2genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCC-ACTGGCGTGTGCAAGGCAGTAG aatgggatatagagaactaagaattgagttcaaatggtgggctcctatagATATTGATGAATGCCAAAACCCAGGGATCTGCGGTCAGATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTACCAAATGGAACTGGCCCACTGGCGTGTGCAAGGCAATAGgtgcctagggaacctaccaatgctataaagctctgagtgtagcctaccat Alignment from Exonerate_coding2genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCC-ACTGGCGTGTGCAAGGCAGTAG aatgggatatagagaactaagaattgagttcaaatggtgggctcctatagATATTGATGAATGCCAAAACCCAGGGATCTGCGGTCAGATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTACCAAATGGAACTGGCCCACTGGCGTGTGCAAGGCAATAGgtgcctagggaacctaccaatgctataaagctctgagtgtagcctaccat Alignment from GeneWise ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTT-GCCACTGGCGTGTGCAAGGCAGTAG aatgggatatagagaactaagaattgagttcaaatggtgggctcctatagATATTGATGAATGCCAAAACCCAGGGATCTGCGGTCAGATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTACCAAATGGAACTGGCCCACTGGCGTGTGCAAGGCAATAGgtgcctagggaacctaccaatgctataaagctctgagtgtagcctaccat #### Vps13a_ID4059_64 --> 0 - 1 Original Alignment GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTG-AAAGCACTAGTTGGTGGAGCCGTTg cacagtgatgtcactccaggtctttattgatagccctatcctgtgcctagGGGGCTATCCAAGGTCCTGAAGAATTTGTGGCGGGAATGGCATTAGGATTACAAAGCACTAGTTGGTGGAGCCGTTggtaagtagcaacagaactagtgacacgagtcacaccagtgatgaatgggc Alignment from CESAR GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTG-AAAGCACTAGTTGGTGGAGCCGTTg cacagtgatgtcactccaggtctttattgatagccctatcctgtgcctagGGGGCTATCCAAGGTCCTGAAGAATTTGTGGCGGGAATGGCATTAGGATTACAAAGCACTAGTTGGTGGAGCCGTTggtaagtagcaacagaactagtgacacgagtcacaccagtgatgaatgggc Alignment from Spaln_aa2Genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTG-AAAGCACTAGTTGGTGGAGCCGTTG cacagtgatgtcactccaggtctttattgatagccctatcctgtgcctagGGGGCTATCCAAGGTCCTGAAGAATTTGTGGCGGGAATGGCATTAGGATTAcAAAGCACTAGTTGGTGGAGCCGTTGgtaagtagcaacagaactagtgacacgagtcacaccagtgatgaatgggc Alignment from Spaln_nt2Genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTG-AAAGCACTAGTTGGTGGAGCCGTTG cacagtgatgtcactccaggtctttattgatagccctatcctgtgcctagGGGGCTATCCAAGGTCCTGAAGAATTTGTGGCGGGAATGGCATTAGGATTACAAAGCACTAGTTGGTGGAGCCGTTGgtaagtagcaacagaactagtgacacgagtcacaccagtgatgaatgggc Alignment from Pairagon GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTG-AAAGCACTAGTTGGTGGAGCCGTTG cacagtgatgtcactccaggtctttattgatagccctatcctgtgcctagGGGGCTATCCAAGGTCCTGAAGAATTTGTGGCGGGAATGGCATTAGGATTACAAAGCACTAGTTGGTGGAGCCGTTGgtaagtagcaacagaactagtgacacgagtcacaccagtgatgaatgggc Alignment from Exonerate_protein2genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTG-AAAGCACTAGTTGGTGGAGCCGTTG cacagtgatgtcactccaggtctttattgatagccctatcctgtgcctagGGGGCTATCCAAGGTCCTGAAGAATTTGTGGCGGGAATGGCATTAGGATTACAAAGCACTAGTTGGTGGAGCCGTTGgtaagtagcaacagaactagtgacacgagtcacaccagtgatgaatgggc Alignment from Exonerate_coding2genome GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGATTG-AAAGCACTAGTTGGTGGAGCCGTTG cacagtgatgtcactccaggtctttattgatagccctatcctgtgcctagGGGGCTATCCAAGGTCCTGAAGAATTTGTGGCGGGAATGGCATTAGGATTACAAAGCACTAGTTGGTGGAGCCGTTGgtaagtagcaacagaactagtgacacgagtcacaccagtgatgaatgggc Alignment from GeneWise GGGGCTATCCAGGGTCCTGAAGAGTTTGTGGAGGGAATGGCGCTAGGA-TTGAAAGCACTAGTTGGTGGAGCCGTTG cacagtgatgtcactccaggtctttattgatagccctatcctgtgcctagGGGGCTATCCAAGGTCCTGAAGAATTTGTGGCGGGAATGGCATTAGGATTACAAAGCACTAGTTGGTGGAGCCGTTGgtaagtagcaacagaactagtgacacgagtcacaccagtgatgaatgggc #### Vps13a_ID4074_49 --> 0 - 0 Original Alignment GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGA-TGCAAAGGTCTGAAAATGGAATACCAA atacaaatatttcattcattatttgtagagaattcttctttgttccttagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAATTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGACTGTAAAGGTCTGAAAATGGAATACCAAgtaagttggtcctgtgccttaaagaacttccagatatactgtagctacca Alignment from CESAR GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGA-TGCAAAGGTCTGAAAATGGAATACCAA atacaaatatttcattcattatttgtagagaattcttctttgttccttagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAATTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGACTGTAAAGGTCTGAAAATGGAATACCAAgtaagttggtcctgtgccttaaagaacttccagatatactgtagctacca Alignment from Spaln_aa2Genome GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGA-TGCAAAGGTCTGAAAATGGAATACCAA atacaaatatttcattcattatttgtagagaattcttctttgttccttagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAATTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGAcTGTAAAGGTCTGAAAATGGAATACCAAgtaagttggtcctgtgccttaaagaacttccagatatactgtagctacca Alignment from Spaln_nt2Genome GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGA-TGCAAAGGTCTGAAAATGGAATACCAA atacaaatatttcattcattatttgtagagaattcttctttgttccttagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAATTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGACTGTAAAGGTCTGAAAATGGAATACCAAgtaagttggtcctgtgccttaaagaacttccagatatactgtagctacca Alignment from Pairagon GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGA-TGCAAAGGTCTGAAAATGGAATACCAA atacaaatatttcattcattatttgtagagaattcttctttgttccttagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAATTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGACTGTAAAGGTCTGAAAATGGAATACCAAgtaagttggtcctgtgccttaaagaacttccagatatactgtagctacca Alignment from Exonerate_protein2genome GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGA-TGCAAAGGTCTGAAAATGGAATACCAA atacaaatatttcattcattatttgtagagaattcttctttgttccttagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAATTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGACTGTAAAGGTCTGAAAATGGAATACCAAgtaagttggtcctgtgccttaaagaacttccagatatactgtagctacca Alignment from Exonerate_coding2genome GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGA-TGCAAAGGTCTGAAAATGGAATACCAA atacaaatatttcattcattatttgtagagaattcttctttgttccttagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAATTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGACTGTAAAGGTCTGAAAATGGAATACCAAgtaagttggtcctgtgccttaaagaacttccagatatactgtagctacca Alignment from GeneWise GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCCATT-AGATGCAAAGGTCTGAAAATGGAATACCAA atacaaatatttcattcattatttgtagagaattcttctttgttccttagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAATTTTCAATTGATACTGTTGGTAGTCATGGAGCCATTAGACTGTAAAGGTCTGAAAATGGAATACCAAgtaagttggtcctgtgccttaaagaacttccagatatactgtagctacca #### Vps13a_ID4093_30 --> 2 - 1 Original Alignment ctTTAAAGCTACCCACGAATGAAGATATT-ATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAg gttgtctgtcagtaaatttcctgatgccttcttttgttttgctccaatagctTTAAAGCTACCTATAAATGAAGACATTCATTACATTGCAGCTCGTGGCAGAACTATCATGTTTAAAAATTCTCATCCAGGATCAGAAACAGAACGTATCGGAAATCAAAATTGAAggtaattatatctattacctgtatttaggattaactaagttcaaaaggcag Alignment from CESAR ctTTAAAGCTACCCACGAATGAAGATATT-ATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAg gttgtctgtcagtaaatttcctgatgccttcttttgttttgctccaatagctTTAAAGCTACCTATAAATGAAGACATTCATTACATTGCAGCTCGTGGCAGAACTATCATGTTTAAAAATTCTCATCCAGGATCAGAAACAGAACGTATCGGAAATCAAAATTGAAggtaattatatctattacctgtatttaggattaactaagttcaaaaggcag Alignment from Spaln_aa2Genome CTTTAAAGCTACCCACGAATGAAGATATT-ATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gttgtctgtcagtaaatttcctgatgccttcttttgttttgctccaatagCTTTAAAGCTACCTATAAATGAAGACATTcATTACATTGCAGCTCGTGGCAGAACTATCATGTTTAAAAATTCTCATCCAGGATCAGAAACAGAACGTATCGGAAATCAAAATTGAAGgtaattatatctattacctgtatttaggattaactaagttcaaaaggcag Alignment from Spaln_nt2Genome CTTTAAAGCTACCCACGAATGAAGATATT-ATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gttgtctgtcagtaaatttcctgatgccttcttttgttttgctccaatagCTTTAAAGCTACCTATAAATGAAGACATTCATTACATTGCAGCTCGTGGCAGAACTATCATGTTTAAAAATTCTCATCCAGGATCAGAAACAGAACGTATCGGAAATCAAAATTGAAGgtaattatatctattacctgtatttaggattaactaagttcaaaaggcag Alignment from Pairagon CTTTAAAGCTACCCACGAATGAAGATATT-ATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gttgtctgtcagtaaatttcctgatgccttcttttgttttgctccaatagCTTTAAAGCTACCTATAAATGAAGACATTCATTACATTGCAGCTCGTGGCAGAACTATCATGTTTAAAAATTCTCATCCAGGATCAGAAACAGAACGTATCGGAAATCAAAATTGAAGgtaattatatctattacctgtatttaggattaactaagttcaaaaggcag Alignment from Exonerate_protein2genome CTTTAAAGCTACCCACGAATGAAGATATT-ATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gttgtctgtcagtaaatttcctgatgccttcttttgttttgctccaatagCTTTAAAGCTACCTATAAATGAAGACATTCATTACATTGCAGCTCGTGGCAGAACTATCATGTTTAAAAATTCTCATCCAGGATCAGAAACAGAACGTATCGGAAATCAAAATTGAAGgtaattatatctattacctgtatttaggattaactaagttcaaaaggcag Alignment from Exonerate_coding2genome CTTTAAAGCTACCCACGAATGAAGATATT-ATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gttgtctgtcagtaaatttcctgatgccttcttttgttttgctccaatagCTTTAAAGCTACCTATAAATGAAGACATTCATTACATTGCAGCTCGTGGCAGAACTATCATGTTTAAAAATTCTCATCCAGGATCAGAAACAGAACGTATCGGAAATCAAAATTGAAGgtaattatatctattacctgtatttaggattaactaagttcaaaaggcag Alignment from GeneWise CTTTAAAGCTACCCACGAATGAAGATATT-ATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gttgtctgtcagtaaatttcctgatgccttcttttgttttgctccaatagCTTTAAAGCTACCTATAAATGAAGACATTCATTACATTGCAGCTCGTGGCAGAACTATCATGTTTAAAAATTCTCATCCAGGATCAGAAACAGAACGTATCGGAAATCAAAATTGAAGgtaattatatctattacctgtatttaggattaactaagttcaaaaggcag #### Vps13a_ID4109_14 --> 0 - 0 Original Alignment GAGTTGGAGAAAACTTTGGAT-GTTTTTAATATAACCATAGCTAGACAACAGGCAGAAGTTGAG tcattatcaggagggttttatccatgaaccctctgatcattatatttcagGAGTTGGAAAAAACATTGGATCGTTTTGAATATACCCATAGCTAGACAGCAAGCAGAAGTTGAGgtgcggccatactatcattaaaataaatcatgagaagttatatttcttcc Alignment from CESAR GAGTTGGAGAAAACTTTGGAT-GTTTTTAATATAACCATAGCTAGACAACAGGCAGAAGTTGAG tcattatcaggagggttttatccatgaaccctctgatcattatatttcagGAGTTGGAAAAAACATTGGATCGTTTTGAATATACCCATAGCTAGACAGCAAGCAGAAGTTGAGgtgcggccatactatcattaaaataaatcatgagaagttatatttcttcc Alignment from Spaln_aa2Genome GAGTTGGAGAAAACTTTGGAT-GTTTTTAATATAACCATAGCTAGACAACAGGCAGAAGTTGAG tcattatcaggagggttttatccatgaaccctctgatcattatatttcagGAGTTGGAAAAAACATTGGATcGTTTTGAATATACCCATAGCTAGACAGCAAGCAGAAGTTGAGgtgcggccatactatcattaaaataaatcatgagaagttatatttcttcc Alignment from Spaln_nt2Genome GAGTTGGAGAAAACTTTGGAT-GTTTTTAATATAACCATAGCTAGACAACAGGCAGAAGTTGAG tcattatcaggagggttttatccatgaaccctctgatcattatatttcagGAGTTGGAAAAAACATTGGATCGTTTTGAATATACCCATAGCTAGACAGCAAGCAGAAGTTGAGgtgcggccatactatcattaaaataaatcatgagaagttatatttcttcc Alignment from Pairagon GAGTTGGAGAAAACTTTGGAT-GTTTTTAATATAACCATAGCTAGACAACAGGCAGAAGTTGAG tcattatcaggagggttttatccatgaaccctctgatcattatatttcagGAGTTGGAAAAAACATTGGATCGTTTTGAATATACCCATAGCTAGACAGCAAGCAGAAGTTGAGgtgcggccatactatcattaaaataaatcatgagaagttatatttcttcc Alignment from Exonerate_protein2genome GAGTTGGAGAAAACTTTGGAT-GTTTTTAATATAACCATAGCTAGACAACAGGCAGAAGTTGAG tcattatcaggagggttttatccatgaaccctctgatcattatatttcagGAGTTGGAAAAAACATTGGATCGTTTTGAATATACCCATAGCTAGACAGCAAGCAGAAGTTGAGgtgcggccatactatcattaaaataaatcatgagaagttatatttcttcc Alignment from Exonerate_coding2genome GAGTTGGAGAAAACTTTGGAT-GTTTTTAATATAACCATAGCTAGACAACAGGCAGAAGTTGAG tcattatcaggagggttttatccatgaaccctctgatcattatatttcagGAGTTGGAAAAAACATTGGATCGTTTTGAATATACCCATAGCTAGACAGCAAGCAGAAGTTGAGgtgcggccatactatcattaaaataaatcatgagaagttatatttcttcc Alignment from GeneWise GAGTTGGAGAAAACTTTGGAT-GTTTTTAATATAACCATAGCTAGACAACAGGCAGAAGTTGAG tcattatcaggagggttttatccatgaaccctctgatcattatatttcagGAGTTGGAAAAAACATTGGATCGTTTTGAATATACCCATAGCTAGACAGCAAGCAGAAGTTGAGgtgcggccatactatcattaaaataaatcatgagaagttatatttcttcc #### Vps13a_ID4119_4 --> 2 - 1 Original Alignment gtAGTCTTAAACTTAAAATTCCA-TGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTa tgagcccctactccctgcataaaaacctttctaaccccacccaccctcaggtAGCCTTAAACTTAAAATCCCACTGGAAAAACCTTTATACTCAACCAGTTGGAGCAGTTTTGGAAGAAATCTTTTTACTCATAGTGCCTTCTTCTagtaaggcacttaaagttgatcatatagcttattcccaggtgtaaagtttg Alignment from CESAR gtAGTCTTAAACTTAAAATTCCA-TGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTa tgagcccctactccctgcataaaaacctttctaaccccacccaccctcaggtAGCCTTAAACTTAAAATCCCACTGGAAAAACCTTTATACTCAACCAGTTGGAGCAGTTTTGGAAGAAATCTTTTTACTCATAGTGCCTTCTTCTagtaaggcacttaaagttgatcatatagcttattcccaggtgtaaagtttg Alignment from Spaln_aa2Genome GTAGTCTTAAACTTAAAATTCCA-TGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA tgagcccctactccctgcataaaaacctttctaaccccacccaccctcagGTAGCCTTAAACTTAAAATCCCAcTGGAAAAACCTTTATACTCAACCAGTTGGAGCAGTTTTGGAAGAAATCTTTTTACTCATAGTGCCTTCTTCTAgtaaggcacttaaagttgatcatatagcttattcccaggtgtaaagtttg Alignment from Spaln_nt2Genome GTAGTCTTAAACTTAAAATTCCA-TGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA tgagcccctactccctgcataaaaacctttctaaccccacccaccctcagGTAGCCTTAAACTTAAAATCCCACTGGAAAAACCTTTATACTCAACCAGTTGGAGCAGTTTTGGAAGAAATCTTTTTACTCATAGTGCCTTCTTCTAgtaaggcacttaaagttgatcatatagcttattcccaggtgtaaagtttg Alignment from Pairagon GTAGTCTTAAACTTAAAATTCCA-TGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA tgagcccctactccctgcataaaaacctttctaaccccacccaccctcagGTAGCCTTAAACTTAAAATCCCACTGGAAAAACCTTTATACTCAACCAGTTGGAGCAGTTTTGGAAGAAATCTTTTTACTCATAGTGCCTTCTTCTAgtaaggcacttaaagttgatcatatagcttattcccaggtgtaaagtttg Alignment from Exonerate_protein2genome GTAGTCTTAAACTTAAAATTCCA-TGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA tgagcccctactccctgcataaaaacctttctaaccccacccaccctcagGTAGCCTTAAACTTAAAATCCCACTGGAAAAACCTTTATACTCAACCAGTTGGAGCAGTTTTGGAAGAAATCTTTTTACTCATAGTGCCTTCTTCTAgtaaggcacttaaagttgatcatatagcttattcccaggtgtaaagtttg Alignment from Exonerate_coding2genome GTAGTCTTAAACTTAAAATTCCA-TGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA tgagcccctactccctgcataaaaacctttctaaccccacccaccctcagGTAGCCTTAAACTTAAAATCCCACTGGAAAAACCTTTATACTCAACCAGTTGGAGCAGTTTTGGAAGAAATCTTTTTACTCATAGTGCCTTCTTCTAgtaaggcacttaaagttgatcatatagcttattcccaggtgtaaagtttg Alignment from GeneWise TTAAAGAAAATGCATTGCATGAA---TTGGATGTACCATTCAAAGTTAAAGTTGGTCATATAGGTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA TGAGCCCCTACTCCCTGCATAAAAACCTTTCTAACCCCACCCACCCTCAGGTA------------GCCTTAAACTTAAAATCCCACTGGAAAAACCTTTATACTCAACCAGTTGGAGCAGTTTTGGAAGAAATCTTTTTACTCATAGTGCCTTCTTCTAgtaaggcacttaaagttgatcatatagcttattcccaggtgtaaagtttg #### Vps37c_ID2983_3 --> 2 - 0 Original Alignment agAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATC-GAAGGCATGAAGATCGAGGAGGAGTCTGAG taattaaggcaatgtgtttcaaagattaaaagccctgtttgctcttgcagagAAATTTTCCTCAGCACTGCAGCCTGGGACCTTATTGGACCTCCTGCAGATTCGAAGGCATGAAGATTGAGGAGGAGTCAGAGgtaagataagcattactcctaatccattaaacagtggtgtctgaatgagg Alignment from CESAR agAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATC-GAAGGCATGAAGATCGAGGAGGAGTCTGAG taattaaggcaatgtgtttcaaagattaaaagccctgtttgctcttgcagagAAATTTTCCTCAGCACTGCAGCCTGGGACCTTATTGGACCTCCTGCAGATTCGAAGGCATGAAGATTGAGGAGGAGTCAGAGgtaagataagcattactcctaatccattaaacagtggtgtctgaatgagg Alignment from Spaln_aa2Genome AGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATC-GAAGGCATGAAGATCGAGGAGGAGTCTGAG taattaaggcaatgtgtttcaaagattaaaagccctgtttgctcttgcagAGAAATTTTCCTCAGCACTGCAGCCTGGGACCTTATTGGACCTCCTGCAGATTcGAAGGCATGAAGATTGAGGAGGAGTCAGAGgtaagataagcattactcctaatccattaaacagtggtgtctgaatgagg Alignment from Spaln_nt2Genome AGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGA-TCGAAGGCATGAAGATCGAGGAGGAGTCTGAG taattaaggcaatgtgtttcaaagattaaaagccctgtttgctcttgcagAGAAATTTTCCTCAGCACTGCAGCCTGGGACCTTATTGGACCTCCTGCAGATTCGAAGGCATGAAGATTGAGGAGGAGTCAGAGgtaagataagcattactcctaatccattaaacagtggtgtctgaatgagg Alignment from Pairagon AGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGA-TCGAAGGCATGAAGATCGAGGAGGAGTCTGAG taattaaggcaatgtgtttcaaagattaaaagccctgtttgctcttgcagAGAAATTTTCCTCAGCACTGCAGCCTGGGACCTTATTGGACCTCCTGCAGATTCGAAGGCATGAAGATTGAGGAGGAGTCAGAGgtaagataagcattactcctaatccattaaacagtggtgtctgaatgagg Alignment from Exonerate_protein2genome AGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATC-GAAGGCATGAAGATCGAGGAGGAGTCTGAG taattaaggcaatgtgtttcaaagattaaaagccctgtttgctcttgcagAGAAATTTTCCTCAGCACTGCAGCCTGGGACCTTATTGGACCTCCTGCAGATTCGAAGGCATGAAGATTGAGGAGGAGTCAGAGgtaagataagcattactcctaatccattaaacagtggtgtctgaatgagg Alignment from Exonerate_coding2genome AGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATC-GAAGGCATGAAGATCGAGGAGGAGTCTGAG taattaaggcaatgtgtttcaaagattaaaagccctgtttgctcttgcagAGAAATTTTCCTCAGCACTGCAGCCTGGGACCTTATTGGACCTCCTGCAGATTCGAAGGCATGAAGATTGAGGAGGAGTCAGAGgtaagataagcattactcctaatccattaaacagtggtgtctgaatgagg Alignment from GeneWise AGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAG-ATCGAAGGCATGAAGATCGAGGAGGAGTCTGAG taattaaggcaatgtgtttcaaagattaaaagccctgtttgctcttgcagAGAAATTTTCCTCAGCACTGCAGCCTGGGACCTTATTGGACCTCCTGCAGATTCGAAGGCATGAAGATTGAGGAGGAGTCAGAGgtaagataagcattactcctaatccattaaacagtggtgtctgaatgagg #### Vwce_ID2948_3 --> 2 - 1 Original Alignment ccCTCTGCTCCTTTGGCTGT-GGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAg tcctcatttatctgtgcaactaagatttcccattggccactctcttgcagccCTCTGTTCCTTTGGCTGTCGGAAGTGGCATCTGCATAACTCCTAATGTTTGCTCATGCCAGGATGGAGAGCAAGGGGCCACGTGCCCAggtagaggttgtgagagagagcagacatgatcgtctaaatagtatggagat Alignment from CESAR ccCTCTGCTCCTTTGGCTGT-GGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAg tcctcatttatctgtgcaactaagatttcccattggccactctcttgcagccCTCTGTTCCTTTGGCTGTCGGAAGTGGCATCTGCATAACTCCTAATGTTTGCTCATGCCAGGATGGAGAGCAAGGGGCCACGTGCCCAggtagaggttgtgagagagagcagacatgatcgtctaaatagtatggagat Alignment from Spaln_aa2Genome CTGCCCCTCTGCTCCTTTGGCTGT-GGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG tcatttatctgtgcaactaagatttcccattggccactctcttgca gCCCTCTGTTCCTTTGGCTGTcGGAAGTGGCATCTGCATAACTCCTAATGTTTGCTCATGCCAGGATGGAGAGCAAGGGGCCACGTGCCCAGgtagaggttgtgagagagagcagacatgatcgtctaaatagtatggagat Alignment from Spaln_nt2Genome TGCCCCTCTGCTCCTTTGGCTGT-GGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG tcctcatttatctgtgcaactaagatttcccattggccactctcttgcag---CCCTCTGTTCCTTTGGCTGTCGGAAGTGGCATCTGCATAACTCCTAATGTTTGCTCATGCCAGGATGGAGAGCAAGGGGCCACGTGCCCAGgtagaggttgtgagagagagcagacatgatcgtctaaatagtatggagat Alignment from Pairagon TGCCCCTCTGCTCCTTTGGCTGT-GGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG tcctcatttatctgtgcaactaagatttcccattggccactctcttgcag---CCCTCTGTTCCTTTGGCTGTCGGAAGTGGCATCTGCATAACTCCTAATGTTTGCTCATGCCAGGATGGAGAGCAAGGGGCCACGTGCCCAGgtagaggttgtgagagagagcagacatgatcgtctaaatagtatggagat Alignment from Exonerate_protein2genome CCCTCTGCTCCTTTGGCTGT-GGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG tcctcatttatctgtgcaactaagatttcccattggccactctcttgcagCCCTCTGTTCCTTTGGCTGTCGGAAGTGGCATCTGCATAACTCCTAATGTTTGCTCATGCCAGGATGGAGAGCAAGGGGCCACGTGCCCAGgtagaggttgtgagagagagcagacatgatcgtctaaatagtatggagat Alignment from Exonerate_coding2genome CCCTCTGCTCCTTTGGCTGT-GGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG tcctcatttatctgtgcaactaagatttcccattggccactctcttgcagCCCTCTGTTCCTTTGGCTGTCGGAAGTGGCATCTGCATAACTCCTAATGTTTGCTCATGCCAGGATGGAGAGCAAGGGGCCACGTGCCCAGgtagaggttgtgagagagagcagacatgatcgtctaaatagtatggagat Alignment from GeneWise --CTGCCCCTCTGCTCC---------------------TTTGGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG tcctcatttatctgtgcaactaagATTTCCCATTGGCCACTCTCTTGCAGCCCTCTGTTCCTTTGGCTGTCGGAAGTGGCATCTGCATAACTCCTAATGTTTGCTCATGCCAGGATGGAGAGCAAGGGGCCACGTGCCCAGgtagaggttgtgagagagagcagacatgatcgtctaaatagtatggagat #### Wdr74_ID2314_4 --> 1 - 0 Original Alignment cACCCTTATCACATGTGTGGATTCTGGGATCCTCAGA-GTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA aaaaaccatgttttgtaaccaacatccccctgaggaagttgggtccccagaACTCTTATTACATGTGTGGATTCTGGGATCCTGAGACGTATGGTGTGAGAATGATAAAGAGGCATCCTCTGACCCAgtacatttgatcttccctgacaggcagcttgggtaagggtctaatgggta Alignment from CESAR cACCCTTATCACATGTGTGGATTCTGGGATCCTCAGA-GTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA aaaaaccatgttttgtaaccaacatccccctgaggaagttgggtccccagaACTCTTATTACATGTGTGGATTCTGGGATCCTGAGACGTATGGTGTGAGAATGATAAAGAGGCATCCTCTGACCCAgtacatttgatcttccctgacaggcagcttgggtaagggtctaatgggta Alignment from Spaln_aa2Genome CACCCTTATCACATGTGTGGATTCTGGGATCCTCAGA-GTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA aaaaaccatgttttgtaaccaacatccccctgaggaagttgggtccccagAACTCTTATTACATGTGTGGATTCTGGGATCCTGAGAcGTATGGTGTGAGAATGATAAAGAGGCATCCTCTGACCCAgtacatttgatcttccctgacaggcagcttgggtaagggtctaatgggta Alignment from Spaln_nt2Genome CACCCTTATCACATGTGTGGATTCTGGGATCCTCAGA-GTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA aaaaaccatgttttgtaaccaacatccccctgaggaagttgggtccccagAACTCTTATTACATGTGTGGATTCTGGGATCCTGAGACGTATGGTGTGAGAATGATAAAGAGGCATCCTCTGACCCAgtacatttgatcttccctgacaggcagcttgggtaagggtctaatgggta Alignment from Pairagon CACCCTTATCACATGTGTGGATTCTGGGATCCTCAGA-GTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA aaaaaccatgttttgtaaccaacatccccctgaggaagttgggtccccagAACTCTTATTACATGTGTGGATTCTGGGATCCTGAGACGTATGGTGTGAGAATGATAAAGAGGCATCCTCTGACCCAgtacatttgatcttccctgacaggcagcttgggtaagggtctaatgggta Alignment from Exonerate_protein2genome CACCCTTATCACATGTGTGGATTCTGGGATCCTCAGA-GTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA aaaaaccatgttttgtaaccaacatccccctgaggaagttgggtccccagAACTCTTATTACATGTGTGGATTCTGGGATCCTGAGACGTATGGTGTGAGAATGATAAAGAGGCATCCTCTGACCCAgtacatttgatcttccctgacaggcagcttgggtaagggtctaatgggta Alignment from Exonerate_coding2genome CACCCTTATCACATGTGTGGATTCTGGGATCCTCAGA-GTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA aaaaaccatgttttgtaaccaacatccccctgaggaagttgggtccccagAACTCTTATTACATGTGTGGATTCTGGGATCCTGAGACGTATGGTGTGAGAATGATAAAGAGGCATCCTCTGACCCAgtacatttgatcttccctgacaggcagcttgggtaagggtctaatgggta Alignment from GeneWise CACCCTTATCACATGTGTGGATTCTGGGATCCTCAGA-GTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA aaaaaccatgttttgtaaccaacatccccctgaggaagttgggtccccagAACTCTTATTACATGTGTGGATTCTGGGATCCTGAGACGTATGGTGTGAGAATGATAAAGAGGCATCCTCTGACCCAgtacatttgatcttccctgacaggcagcttgggtaagggtctaatgggta #### Wdr74_ID2318_8 --> 1 - 1 Original Alignment tTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATT-GATTTTCGGCAAg aaatgggatctaggactcacgctgatcctgcccatattccctctccgtagtTCTGTCATTGTAGGGAACACTCATGGGCAACTGGCAGAAATTCGACTTTCGGCAAggtgagggcaccatagatttcttgagaaggaaagtaaacgaggggtcacta Alignment from CESAR tTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATT-GATTTTCGGCAAg aaatgggatctaggactcacgctgatcctgcccatattccctctccgtagtTCTGTCATTGTAGGGAACACTCATGGGCAACTGGCAGAAATTCGACTTTCGGCAAggtgagggcaccatagatttcttgagaaggaaagtaaacgaggggtcacta Alignment from Spaln_aa2Genome TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATT-GATTTTCGGCAAG aaatgggatctaggactcacgctgatcctgcccatattccctctccgtagTTCTGTCATTGTAGGGAACACTCATGGGCAACTGGCAGAAATTcGACTTTCGGCAAGgtgagggcaccatagatttcttgagaaggaaagtaaacgaggggtcacta Alignment from Spaln_nt2Genome TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATT-GATTTTCGGCAAG aaatgggatctaggactcacgctgatcctgcccatattccctctccgtagTTCTGTCATTGTAGGGAACACTCATGGGCAACTGGCAGAAATTCGACTTTCGGCAAGgtgagggcaccatagatttcttgagaaggaaagtaaacgaggggtcacta Alignment from Pairagon TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATT-GATTTTCGGCAAG aaatgggatctaggactcacgctgatcctgcccatattccctctccgtagTTCTGTCATTGTAGGGAACACTCATGGGCAACTGGCAGAAATTCGACTTTCGGCAAGgtgagggcaccatagatttcttgagaaggaaagtaaacgaggggtcacta Alignment from Exonerate_protein2genome TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATT-GATTTTCGGCAAG aaatgggatctaggactcacgctgatcctgcccatattccctctccgtagTTCTGTCATTGTAGGGAACACTCATGGGCAACTGGCAGAAATTCGACTTTCGGCAAGgtgagggcaccatagatttcttgagaaggaaagtaaacgaggggtcacta Alignment from Exonerate_coding2genome TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATT-GATTTTCGGCAAG aaatgggatctaggactcacgctgatcctgcccatattccctctccgtagTTCTGTCATTGTAGGGAACACTCATGGGCAACTGGCAGAAATTCGACTTTCGGCAAGgtgagggcaccatagatttcttgagaaggaaagtaaacgaggggtcacta Alignment from GeneWise TTCCGTCATCGTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAGGGCG aaatgggatctaggactcacgctgatcctgcccatattccctctccgtagTTCTGTCATTGTAGGGAACACTCATGGGCAACTGGCAGAAATTCGACTT---TCGGCAAGgtgagggcaccatagatttcttgagaaggaaagtaaacgaggggtcacta #### Wdr74_ID2319_9 --> 2 - 0 Original Alignment ggCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTG-GACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaatacctgctcgcgcttcgcccctgcaggcAGACTAGTGGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGCTGCACTGCCATCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGCGACAGAATATTGAGGATATACAGGATACGCAATCCATGTGGTCTAGAGCATAAGgtaaggtgagcaaacagggcgcgatgggtcccgcgctcatgtcactatac Alignment from CESAR ggCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTG-GACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaatacctgctcgcgcttcgcccctgcaggcAGACTAGTGGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGCTGCACTGCCATCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGCGACAGAATATTGAGGATATACAGGATACGCAATCCATGTGGTCTAGAGCATAAGgtaaggtgagcaaacagggcgcgatgggtcccgcgctcatgtcactatac Alignment from Spaln_aa2Genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTG-GACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaatacctgctcgcgcttcgcccctgcagGCAGACTAGTGGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGCTGCACTGCCATCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGcGACAGAATATTGAGGATATACAGGATACGCAATCCATGTGGTCTAGAGCATAAGgtaaggtgagcaaacagggcgcgatgggtcccgcgctcatgtcactatac Alignment from Spaln_nt2Genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTG-GACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaatacctgctcgcgcttcgcccctgcagGCAGACTAGTGGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGCTGCACTGCCATCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGCGACAGAATATTGAGGATATACAGGATACGCAATCCATGTGGTCTAGAGCATAAGgtaaggtgagcaaacagggcgcgatgggtcccgcgctcatgtcactatac Alignment from Pairagon GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTG-GACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaatacctgctcgcgcttcgcccctgcagGCAGACTAGTGGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGCTGCACTGCCATCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGCGACAGAATATTGAGGATATACAGGATACGCAATCCATGTGGTCTAGAGCATAAGgtaaggtgagcaaacagggcgcgatgggtcccgcgctcatgtcactatac Alignment from Exonerate_protein2genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTG-GACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaatacctgctcgcgcttcgcccctgcagGCAGACTAGTGGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGCTGCACTGCCATCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGCGACAGAATATTGAGGATATACAGGATACGCAATCCATGTGGTCTAGAGCATAAGgtaaggtgagcaaacagggcgcgatgggtcccgcgctcatgtcactatac Alignment from Exonerate_coding2genome GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGCTTG-GACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaatacctgctcgcgcttcgcccctgcagGCAGACTAGTGGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGCTGCACTGCCATCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGCGACAGAATATTGAGGATATACAGGATACGCAATCCATGTGGTCTAGAGCATAAGgtaaggtgagcaaacagggcgcgatgggtcccgcgctcatgtcactatac Alignment from GeneWise GGCGTCTACTGGGCTGTCTGAAGGGGCTTGCAGGTAGTGTTCGTGGGCTGCAGTGTCACCCTTCAAAGCCCCTATTAGCCTCATGTGGC-TTGGACAGAGTCTTGAGGATACACAGGATCCGCAATCCACGTGGGCTAGAGCATAAG gtgtaagattggctaatcagccaatacctgctcgcgcttcgcccctgcagGCAGACTAGTGGGCTGTCTGAAGGGCCTTGCAGGTGGTGTTCGTGGGCTGCACTGCCATCCTTCAAAGCCCCTATTAGCCTCATGTGGCCTGCGACAGAATATTGAGGATATACAGGATACGCAATCCATGTGGTCTAGAGCATAAGgtaaggtgagcaaacagggcgcgatgggtcccgcgctcatgtcactatac #### Wdr74_ID2320_10 --> 0 - 0 Original Alignment GTTTATCTCAAGTCTCAA-CTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG gagtctgggcaggggactatacacacttttatgctttcttctccctgcagGTTTATCTCAAGTGTCAGCCTTAACTGTCTTCTCCTATCAGGCCGGGATAACTGGGAGgtaaggaaagaataagtaaataaggcgaggcctttagagacgggcattta Alignment from CESAR GTTTATCTCAAGTCTCAA-CTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG gagtctgggcaggggactatacacacttttatgctttcttctccctgcagGTTTATCTCAAGTGTCAGCCTTAACTGTCTTCTCCTATCAGGCCGGGATAACTGGGAGgtaaggaaagaataagtaaataaggcgaggcctttagagacgggcattta Alignment from Spaln_aa2Genome GTTTATCTCAAGTCTCAA-CTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG gagtctgggcaggggactatacacacttttatgctttcttctccctgcagGTTTATCTCAAGTGTCAGcCTTAACTGTCTTCTCCTATCAGGCCGGGATAACTGGGAGgtaaggaaagaataagtaaataaggcgaggcctttagagacgggcattta Alignment from Spaln_nt2Genome GTTTATCTCAAGTCTCAAC-TGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG gagtctgggcaggggactatacacacttttatgctttcttctccctgcagGTTTATCTCAAGTGTCAGCCTTAACTGTCTTCTCCTATCAGGCCGGGATAACTGGGAGgtaaggaaagaataagtaaataaggcgaggcctttagagacgggcattta Alignment from Pairagon GTTTATCTCAAGTCTCAA-CTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG gagtctgggcaggggactatacacacttttatgctttcttctccctgcagGTTTATCTCAAGTGTCAGCCTTAACTGTCTTCTCCTATCAGGCCGGGATAACTGGGAGgtaaggaaagaataagtaaataaggcgaggcctttagagacgggcattta Alignment from Exonerate_protein2genome GTTTATCTCAAGTCTCAA-CTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG gagtctgggcaggggactatacacacttttatgctttcttctccctgcagGTTTATCTCAAGTGTCAGCCTTAACTGTCTTCTCCTATCAGGCCGGGATAACTGGGAGgtaaggaaagaataagtaaataaggcgaggcctttagagacgggcattta Alignment from Exonerate_coding2genome GTTTATCTCAAGTCTCAA-CTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG gagtctgggcaggggactatacacacttttatgctttcttctccctgcagGTTTATCTCAAGTGTCAGCCTTAACTGTCTTCTCCTATCAGGCCGGGATAACTGGGAGgtaaggaaagaataagtaaataaggcgaggcctttagagacgggcattta Alignment from GeneWise GTTTATCTCAAG-TCTCAACTGAACTGCCTTCTCCTGTCAGGCCGGGATAACTGGGAG gagtctgggcaggggactatacacacttttatgctttcttctccctgcagGTTTATCTCAAGTGTCAGCCTTAACTGTCTTCTCCTATCAGGCCGGGATAACTGGGAGgtaaggaaagaataagtaaataaggcgaggcctttagagacgggcattta #### Yif1a_ID830_2 --> 2 - 0 Original Alignment gtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGAT-GATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG CTGCACCGTTTTG taagaacaggcaccaaggtttttaattgatgttttgtttgtttttaataggtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATCGACACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCTTTCAGTGTCAATAACCTACTTGGAGACCCACTGGCCAACATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtatgacgataggatctaaactctgtgtgtattgcagTTACACCGTTTTG Alignment from CESAR gtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGAT-GATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG CTGCACCGTTTTG taagaacaggcaccaaggtttttaattgatgttttgtttgtttttaataggtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATCGACACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCTTTCAGTGTCAATAACCTACTTGGAGACCCACTGGCCAACATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtatgacgataggatacatgtgcctttgtggttttagTTACACCGTTTTG Alignment from Spaln_aa2Genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGAT-GATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG CTGCACCGTTTTG taagaacaggcaccaaggtttttaattgatgttttgtttgtttttaatagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATcGACACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCTTTCAGTGTCAATAACCTACTTGGAGACCCACTGGCCAACATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtatgacgataggatctaaactctgtgtgtattgcagTTACACCGTTTTG Alignment from Spaln_nt2Genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGAT-GATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG CTGCACCGTTTTG taagaacaggcaccaaggtttttaattgatgttttgtttgtttttaatagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATCGACACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCTTTCAGTGTCAATAACCTACTTGGAGACCCACTGGCCAACATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtatgacgataggatctaaactctgtgtgtattgcagTTACACCGTTTTG Alignment from Pairagon GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGAT-GATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG CTGCACCGTTTTG taagaacaggcaccaaggtttttaattgatgttttgtttgtttttaatagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATCGACACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCTTTCAGTGTCAATAACCTACTTGGAGACCCACTGGCCAACATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtatgacgataggatctaaactctgtgtgtattgcagTTACACCGTTTTG Alignment from Exonerate_protein2genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGAT-GATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG CTGCACCGTTTTG taagaacaggcaccaaggtttttaattgatgttttgtttgtttttaatagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATCGACACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCTTTCAGTGTCAATAACCTACTTGGAGACCCACTGGCCAACATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtatgacgataggatctaaactctgtgtgtattgcagTTACACCGTTTTG Alignment from Exonerate_coding2genome GGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGAT-GATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG CTGCACCGTTTTG taagaacaggcaccaaggtttttaattgatgttttgtttgtttttaataGGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATCGACACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCTTTCAGTGTCAATAACCTACTTGGAGACCCACTGGCCAACATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtatgacgataggatctaaactctgtgtgtattgcagTTACACCGTTTTG Alignment from GeneWise GGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGAT-GATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAG CTGCACCGTTTTG taagaacaggcaccaaggtttttaattgatgttttgtttgtttttaataGGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTTGATCGACACAAGTGGTGGTTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCTTTCAGTGTCAATAACCTACTTGGAGACCCACTGGCCAACATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAGGGAAGGACATAGTGCACAAAGAGgtatgacgataggatctaaactctgtgtgtattgcagTTACACCGTTTTG #### Yif1a_ID831_3 --> 0 - 0 Original Alignment AGTGCACAAAGAG CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTC-TTCCCATACACACATCAG AGTGCACAAAGAGgtaccgcgataggatacatgtgcctttgtggttttagTTACACCGTTTTGTGTCTGTGAATAAACTCAAGTATTTCTTTGCTGTGGACACAGCCTACGTTGCTAAGAAGCTCGGGCTATTAGTCCTTCCCATACACACATCAAgtagcaccatctggagtgtgggccccctacgtgtgaatagcctgcctgat Alignment from CESAR AGTGCACAAAGAG CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTC-TTCCCATACACACATCAG AGTGCACAAAGAGgtatgacgataggatacatgtgcctttgtggttttagTTACACCGTTTTGTGTCTGTGAATAAACTCAAGTATTTCTTTGCTGTGGACACAGCCTACGTTGCTAAGAAGCTCGGGCTATTAGTCCTTCCCATACACACATCAAgtagcaccatctggagtgtgggccccctacgtgtgaatagcctgcctgat Alignment from Spaln_aa2Genome AGTGCACAAAGAG CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTC-TTCCCATACACACATCAG AGTGCACAAAGAGgtaccgcgataggatacatgtgcctttgtggttttagTTACACCGTTTTGTGTCTGTGAATAAACTCAAGTATTTCTTTGCTGTGGACACAGCCTACGTTGCTAAGAAGCTCGGGCTATTAGTCcTTCCCATACACACATCAAgtagcaccatctggagtgtgggccccctacgtgtgaatagcctgcctgat Alignment from Spaln_nt2Genome AGTGCACAAAGAG CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGT-CTTCCCATACACACATCAG AGTGCACAAAGAGgtaccgcgataggatacatgtgcctttgtggttttagTTACACCGTTTTGTGTCTGTGAATAAACTCAAGTATTTCTTTGCTGTGGACACAGCCTACGTTGCTAAGAAGCTCGGGCTATTAGTCCTTCCCATACACACATCAAgtagcaccatctggagtgtgggccccctacgtgtgaatagcctgcctgat Alignment from Pairagon AGTGCACAAAGAG CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGT-CTTCCCATACACACATCAG AGTGCACAAAGAGgtaccgcgataggatacatgtgcctttgtggttttagTTACACCGTTTTGTGTCTGTGAATAAACTCAAGTATTTCTTTGCTGTGGACACAGCCTACGTTGCTAAGAAGCTCGGGCTATTAGTCCTTCCCATACACACATCAAgtagcaccatctggagtgtgggccccctacgtgtgaatagcctgcctgat Alignment from Exonerate_protein2genome AGTGCACAAAGAG CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTC-TTCCCATACACACATCAG AGTGCACAAAGAGgtaccgcgataggatacatgtgcctttgtggttttagTTACACCGTTTTGTGTCTGTGAATAAACTCAAGTATTTCTTTGCTGTGGACACAGCCTACGTTGCTAAGAAGCTCGGGCTATTAGTCCTTCCCATACACACATCAAgtagcaccatctggagtgtgggccccctacgtgtgaatagcctgcctgat Alignment from Exonerate_coding2genome AGTGCACAAAGAG CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTGGTC-TTCCCATACACACATCAG AGTGCACAAAGAGgtaccgcgataggatacatgtgcctttgtggttttagTTACACCGTTTTGTGTCTGTGAATAAACTCAAGTATTTCTTTGCTGTGGACACAGCCTACGTTGCTAAGAAGCTCGGGCTATTAGTCCTTCCCATACACACATCAAgtagcaccatctggagtgtgggccccctacgtgtgaatagcctgcctgat Alignment from GeneWise AGTGCACAAAGAG CTGCACCGTTTTGTGTCCGTGAACAAACTCAAGTATTTTTTTGCTGTGGACACAGCCTATGTCGCTAAGAAGCTAGGGCTATTG-GTCTTCCCATACACACATCAG AGTGCACAAAGAGgtaccgcgataggatacatgtgcctttgtggttttagTTACACCGTTTTGTGTCTGTGAATAAACTCAAGTATTTCTTTGCTGTGGACACAGCCTACGTTGCTAAGAAGCTCGGGCTATTAGTCCTTCCCATACACACATCAAgtagcaccatctggagtgtgggccccctacgtgtgaatagcctgcctgat #### Zdhhc6_ID11621_8 --> 0 - 2 Original Alignment GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACG-AGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGcg acaagttagacatgggtacatcttagctgtggttcccctctcccctgcagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTGCCCATTGAATAGAGGAGTGAGAACCTTCTTTACACAGCCCCTGTACTGAGGAGCCCCGGATCCGGCTGCAAAAAGGTGAGTTCATCCTAGCAATGAGGGGGCTGaggtaagaagaggggggtgtgcttcatggaaaaactggcattgtaacgcttc Alignment from CESAR GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACG-AGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGcg acaagttagacatgggtacatcttagctgtggttcccctctcccctgcagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTGCCCATTGAATAGAGGAGTGAGAACCTTCTTTACACAGCCCCTGTACTGAGGAGCCCCGGATCCGGCTGCAAAAAGGTGAGTTCATCCTAGCAATGAGGGGGCTGaggtaagaagaggggggtgtgcttcatggaaaaactggcattgtaaagtgcc Alignment from Spaln_aa2Genome GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACG-AGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaagttagacatgggtacatcttagctgtggttcccctctcccctgcagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTGCCCATTGAATAGAGGAGTGAGAACCTTCTTTACAcAGCCCCTGTACTGAGGAGCCCCGGATCCGGCTGCAAAAAGGTGAGTTCATCCTAGCAATGAGGGGGCTGAGgtaagaagaggggggtgtgcttcatggaaaaactggcattgtaacgcttc Alignment from Spaln_nt2Genome GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACG-AGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaagttagacatgggtacatcttagctgtggttcccctctcccctgcagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTGCCCATTGAATAGAGGAGTGAGAACCTTCTTTACACAGCCCCTGTACTGAGGAGCCCCGGATCCGGCTGCAAAAAGGTGAGTTCATCCTAGCAATGAGGGGGCTGAGgtaagaagaggggggtgtgcttcatggaaaaactggcattgtaacgcttc Alignment from Pairagon GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACG-AGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaagttagacatgggtacatcttagctgtggttcccctctcccctgcagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTGCCCATTGAATAGAGGAGTGAGAACCTTCTTTACACAGCCCCTGTACTGAGGAGCCCCGGATCCGGCTGCAAAAAGGTGAGTTCATCCTAGCAATGAGGGGGCTGAGgtaagaagaggggggtgtgcttcatggaaaaactggcattgtaacgcttc Alignment from Exonerate_protein2genome GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACG-AGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaagttagacatgggtacatcttagctgtggttcccctctcccctgcagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTGCCCATTGAATAGAGGAGTGAGAACCTTCTTTACACAGCCCCTGTACTGAGGAGCCCCGGATCCGGCTGCAAAAAGGTGAGTTCATCCTAGCAATGAGGGGGCTGAGgtaagaagaggggggtgtgcttcatggaaaaactggcattgtaacgcttc Alignment from Exonerate_coding2genome CAGAAGTGTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTAC--GAGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaagttagacatgggtacatcttagctgtggttcccctctccCCTGCAGGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTGCCCATTGAATAGAGGAGTGAGAACCTTCTTTACACAGCCCC-TGTACTGAGGAGCCCCGGATCCGGCTGCAAAAAGGTGAGTTCATCCTAGCAATGAGGGGGCTGAGgtaagaagaggggggtgtgcttcatggaaaaactggcattgtaacgcttc Alignment from GeneWise GTTCGCTATAAAGTCATAGAAGATTACAATGGTGCCTGCTGCCCTTTGAATAGAGGAGTGAGAACCTTCTTTACG-AGCCCCTGCACTGAGGAGCCTCGGATCCGGCTGCAGAAAGGAGAGTTCATCTTAGCAACGAGAGGGCTGCG acaagttagacatgggtacatcttagctgtggttcccctctcccctgcagGTTCACTATAAGTTTATAGATGACTACAATGGTGCCAGCTGCCCATTGAATAGAGGAGTGAGAACCTTCTTTACACAGCCCCTGTACTGAGGAGCCCCGGATCCGGCTGCAAAAAGGTGAGTTCATCCTAGCAATGAGGGGGCTGAGgtaagaagaggggggtgtgcttcatggaaaaactggcattgtaacgcttc #### Zfand5_ID4879_2 --> 2 - 2 Original Alignment ggACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCA-TCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAag ttttctttaagggagagacaaataagcaacttttcatgtattgtgaacagggACAGCTAGTGGTTCTAACAGTCCCACCTCAGATGCTGCACTCAGCACAGAAACCGGATGCTGGCTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAaggtgagtaggaccatttcttgcattttctagactaagctatcttcactatg Alignment from CESAR ggACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCA-TCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAag ttttctttaagggagagacaaataagcaacttttcatgtattgtgaacagggACAGCTAGTGGTTCTAACAGTCCCACCTCAGATGCTGCACTCAGCACAGAAACCGGATGCTGGCTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAaggtgagtaggaccatttcttgcattttctagactaagctatcttcactatg Alignment from Spaln_aa2Genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCA-TCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctttaagggagagacaaataagcaacttttcatgtattgtgaacagGGACAGCTAGTGGTTCTAACAGTCCCACCTCAGATGCTGCAcTCAGCACAGAAACCGGATGCTGGCTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtgagtaggaccatttcttgcattttctagactaagctatcttcactatg Alignment from Spaln_nt2Genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCA-TCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctttaagggagagacaaataagcaacttttcatgtattgtgaacagGGACAGCTAGTGGTTCTAACAGTCCCACCTCAGATGCTGCACTCAGCACAGAAACCGGATGCTGGCTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtgagtaggaccatttcttgcattttctagactaagctatcttcactatg Alignment from Pairagon GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCA-TCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctttaagggagagacaaataagcaacttttcatgtattgtgaacagGGACAGCTAGTGGTTCTAACAGTCCCACCTCAGATGCTGCACTCAGCACAGAAACCGGATGCTGGCTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtgagtaggaccatttcttgcattttctagactaagctatcttcactatg Alignment from Exonerate_protein2genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCA-TCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctttaagggagagacaaataagcaacttttcatgtattgtgaacagGGACAGCTAGTGGTTCTAACAGTCCCACCTCAGATGCTGCACTCAGCACAGAAACCGGATGCTGGCTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtgagtaggaccatttcttgcattttctagactaagctatcttcactatg Alignment from Exonerate_coding2genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCA-TCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctttaagggagagacaaataagcaacttttcatgtattgtgaacagGGACAGCTAGTGGTTCTAACAGTCCCACCTCAGATGCTGCACTCAGCACAGAAACCGGATGCTGGCTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtgagtaggaccatttcttgcattttctagactaagctatcttcactatg Alignment from GeneWise GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCA-TCTGTACAGAGAGCAGATGCTGGTTTAAACAACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG ttttctttaagggagagacaaataagcaacttttcatgtattgtgaacagGGACAGCTAGTGGTTCTAACAGTCCCACCTCAGATGCTGCACTCAGCACAGAAACCGGATGCTGGCTTGAATAACTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtgagtaggaccatttcttgcattttctagactaagctatcttcactatg #### Zfp91_ID3462_4 --> 2 - 2 Original Alignment atGTTCCAGAAGAACAT-CAGTCTCCCGGTGGCATTag ctagaggttgagtttttggctgtgtaagaccccatctctgtgatctccagatGTTCCTGAAGAACAACCAAACACCTGGTGGCATTaggtgagaggctgctccctatacacctaatgtttcatattgcagaatgtttc Alignment from CESAR atGTTCCAGAAGAACAT-CAGTCTCCCGGTGGCATTag ctagaggttgagtttttggctgtgtaagaccccatctctgtgatctccagatGTTCCTGAAGAACAACCAAACACCTGGTGGCATTaggtgagaggctgctccctatacacctaatgtttcatattgcagaatgtttc Alignment from Spaln_aa2Genome ATGTTCCAGAAGAACAT-CAGTCTCCCGGTGGCATTAG ctagaggttgagtttttggctgtgtaagaccccatctctgtgatctccagATGTTCCTGAAGAACAAcCAAACACCTGGTGGCATTAGgtgagaggctgctccctatacacctaatgtttcatattgcagaatgtttc Alignment from Spaln_nt2Genome ATGTTCCAGAAGAACATC-AGTCTCCCGGTGGCATTAG ctagaggttgagtttttggctgtgtaagaccccatctctgtgatctccagATGTTCCTGAAGAACAACCAAACACCTGGTGGCATTAGgtgagaggctgctccctatacacctaatgtttcatattgcagaatgtttc Alignment from Pairagon ATGTTCCAGAAGAAC-ATCAGTCTCCCGGTGGCATTAG ctagaggttgagtttttggctgtgtaagaccccatctctgtgatctccagATGTTCCTGAAGAACAACCAAACACCTGGTGGCATTAGgtgagaggctgctccctatacacctaatgtttcatattgcagaatgtttc Alignment from Exonerate_protein2genome ATGTTCCAGAAGAA-CATCAGTCTCCCGGTGGCATTAG ctagaggttgagtttttggctgtgtaagaccccatctctgtgatctccagATGTTCCTGAAGAACAACCAAACACCTGGTGGCATTAGgtgagaggctgctccctatacacctaatgtttcatattgcagaatgtttc Alignment from Exonerate_coding2genome ctagaggttgagtttttggctgtgtaagaccccatctctgtgatctccagatgttcctgaagaacaaccaaacacctggtggcattaggtgagaggctgctccctatacacctaatgtttcatattgcagaatgtttc Alignment from GeneWise ctagaggttgagtttttggctgtgtaagaccccatctctgtgatctccagatgttcctgaagaacaaccaaacacctggtggcattaggtgagaggctgctccctatacacctaatgtttcatattgcagaatgtttc #### Zp1_ID3061_11 --> 2 - 1 Original Alignment ggCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCT-GCTAAACTTGAGCCCTCAg gaccctttgacctccacgggtcatcttaagtttctctccttttcccccagagCGTCGACGGTTCCCAGGACACCACAACATCACTCTCCGAGCCCTAGAGATTGTAAGCTCTCCAGGTGCAGTGGACTTTGAGGATGCACGCCAAACTTAAGCCTTCAggtgagtgtgtgtggatgttctttactggggggaggtaagtgcagctccac Alignment from CESAR ggCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCT-GCTAAACTTGAGCCCTCAg gaccctttgacctccacgggtcatcttaagtttctctccttttcccccagagCGTCGACGGTTCCCAGGACACCACAACATCACTCTCCGAGCCCTAGAGATTGTAAGCTCTCCAGGTGCAGTGGACTTTGAGGATGCACGCCAAACTTAAGCCTTCAggtgagtgtgtgtggatgttctttactggggggaggtaagtgcagctccac Alignment from Spaln_aa2Genome GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCT-GCTAAACTTGAGCCCTCAG gaccctttgacctccacgggtcatcttaagtttctctccttttcccccagAGCGTCGACGGTTCCCAGGACACCACAACATCACTCTCCGAGCCCTAGAGATTGTAAGCTCTCCAGGTGCAGTGGACTTTGAGGATGCAcGCCAAACTTAAGCCTTCAGgtgagtgtgtgtggatgttctttactggggggaggtaagtgcagctccac Alignment from Spaln_nt2Genome GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCT-GCTAAACTTGAGCCCTCAG gaccctttgacctccacgggtcatcttaagtttctctccttttcccccagAGCGTCGACGGTTCCCAGGACACCACAACATCACTCTCCGAGCCCTAGAGATTGTAAGCTCTCCAGGTGCAGTGGACTTTGAGGATGCACGCCAAACTTAAGCCTTCAGgtgagtgtgtgtggatgttctttactggggggaggtaagtgcagctccac Alignment from Pairagon GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGC-TGCTAAACTTGAGCCCTCAG gaccctttgacctccacgggtcatcttaagtttctctccttttcccccagAGCGTCGACGGTTCCCAGGACACCACAACATCACTCTCCGAGCCCTAGAGATTGTAAGCTCTCCAGGTGCAGTGGACTTTGAGGATGCACGCCAAACTTAAGCCTTCAGgtgagtgtgtgtggatgttctttactggggggaggtaagtgcagctccac Alignment from Exonerate_protein2genome GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCT-GCTAAACTTGAGCCCTCAG gaccctttgacctccacgggtcatcttaagtttctctccttttcccccagAGCGTCGACGGTTCCCAGGACACCACAACATCACTCTCCGAGCCCTAGAGATTGTAAGCTCTCCAGGTGCAGTGGACTTTGAGGATGCACGCCAAACTTAAGCCTTCAGgtgagtgtgtgtggatgttctttactggggggaggtaagtgcagctccac Alignment from Exonerate_coding2genome GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCT-GCTAAACTTGAGCCCTCAG gaccctttgacctccacgggtcatcttaagtttctctccttttcccccagAGCGTCGACGGTTCCCAGGACACCACAACATCACTCTCCGAGCCCTAGAGATTGTAAGCTCTCCAGGTGCAGTGGACTTTGAGGATGCACGCCAAACTTAAGCCTTCAGgtgagtgtgtgtggatgttctttactggggggaggtaagtgcagctccac Alignment from GeneWise GGCGTCGACGATCCTCTGGTCACCACAACATCACTCTCCGGGCCCTGGATATTGTAAGCTCTCCAGGGGCAGTGGGCTTTGAGGATGCT-GCTAAACTTGAGCCCTCAG gaccctttgacctccacgggtcatcttaagtttctctccttttcccccagAGCGTCGACGGTTCCCAGGACACCACAACATCACTCTCCGAGCCCTAGAGATTGTAAGCTCTCCAGGTGCAGTGGACTTTGAGGATGCACGCCAAACTTAAGCCTTCAGgtgagtgtgtgtggatgttctttactggggggaggtaagtgcagctccac #### Zp1_ID3064_8 --> 2 - 2 Original Alignment atAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTG-CTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATgg gcagcttgaagtacagcctggcctttgttttttaatctcttatttttcagatAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAATACCCCCTTTTAAGACTGCTTCAGAAACCAGCCTATGTTCAGGTGCGGCTTCTGCAGAAAACT---GCCAGCTTGGTTCTGGTGCTTACACCAGTGCTGGGCCACACCAACTACTAGC---TTTGATCAGCCCCAATGGCCTATTCTGTCAGATgcgtagggcataaaagaagaatgtcctgcattcagggtatagacactttcta Alignment from CESAR atAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTA-CACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATgg gcagcttgaagtacagcctggcctttgttttttaatctcttatttttcagatAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAATACCCCCTTTTAAGACTGCTTCAGAAACCAGCCTATGTTCAGGTGCGGCTTCTGCAGAAAACT---GCCAGCTTGGTTCTGGTGCTTACACCAGTGCTGGGCCACACCAACTACTAGC---TTTGATCAGCCCCAATGGCCTATTCTGTCAGATgcgtagggcataaaagaagaatgtcctgcattcagggtatagacactttcta Alignment from Spaln_aa2Genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTG-CTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttgaagtacagcctggcctttgttttttaatctcttatttttcagATAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAATACCCCCTTTTAAGACTGCTTCAGAAACCAGCCTATGTTCAGGTGCGGCTTCTGCAGAAAACT---GCCAGCTTGGTTCTGGTGcTTACACCAGTGCTGGGCCACACCAACT---ACTAGCTTTGATCAGCCCCAATGGCCTATTCTGTCAGATGCgtagggcataaaagaagaatgtcctgcattcagggtatagacactttcta Alignment from Spaln_nt2Genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCT-ACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttgaagtacagcctggcctttgttttttaatctcttatttttcagATAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAATACCCCCTTTTAAGACTGCTTCAGAAACCAGCCTATGTTCAGGTGCGGCTTCTGCAGAAAACTG---CCAGCTTGGTTCTGGTGCTTACACCAGTGCTGGGCCACACCAACTACTAG---CTTTGATCAGCCCCAATGGCCTATTCTGTCAGATGCgtagggcataaaagaagaatgtcctgcattcagggtatagacactttcta Alignment from Pairagon ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGC-TACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttgaagtacagcctggcctttgttttttaatctcttatttttcagATAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAATACCCCCTTTTAAGACTGCTTCAGAAACCAGCCTATGTTCAGGTGCGGCTTCTGCAGAAAACTG---CCAGCTTGGTTCTGGTGCTTACACCAGTGCTGGGCCACACCAACTACTAG---CTTTGATCAGCCCCAATGGCCTATTCTGTCAGATGCgtagggcataaaagaagaatgtcctgcattcagggtatagacactttcta Alignment from Exonerate_protein2genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTG-CTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttgaagtacagcctggcctttgttttttaatctcttatttttcagATAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAATACCCCCTTTTAAGACTGCTTCAGAAACCAGCCTATGTTCAGGTGCGGCTTCTGCAGAAAACT---GCCAGCTTGGTTCTGGTGCTTACACCAGTGCTGGGCCACACCAACTACTAGC---TTTGATCAGCCCCAATGGCCTATTCTGTCAGATGCgtagggcataaaagaagaatgtcctgcattcagggtatagacactttcta Alignment from Exonerate_coding2genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTG-CTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttgaagtacagcctggcctttgttttttaatctcttatttttcagATAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAATACCCCCTTTTAAGACTGCTTCAGAAACCAGCCTATGTTCAGGTGCGGCTTCTGCAGAAAACT---GCCAGCTTGGTTCTGGTGCTTACACCAGTGCTGGGCCACACCAACTACTAGC---TTTGATCAGCCCCAATGGCCTATTCTGTCAGATGCgtagggcataaaagaagaatgtcctgcattcagggtatagacactttcta Alignment from GeneWise ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTG-GTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttgaagtacagcctggcctttgttttttaatctcttatttttcagATAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAATACCCCCTTTTAAGACTGCTTCAGAAACCAGCCTATGTTCAGGTGCGGCTTCTGCAGAAAACT---GCCAGCTTGGTTCTGGTGCTTACACCAGTGCTGGGCCACACCAACTACTAGC---TTTGATCAGCCCCAATGGCCTATTCTGTCAGATGCgtagggcataaaagaagaatgtcctgcattcagggtatagacactttcta #### Zp1_ID3066_6 --> 0 - 2 Original Alignment GTGGTCGGCGAACAACTCATCTATGAGAACCAG-CTGGTGTCTGACATTGATGTCCAAAAGGGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCcg gataggatactcccatcccttcctggaattctccccctgtctcctaccagGTGGTTGGCAAACAACTCATTTATGAGAACCAGCCTGGTGTCTGACATTGATGTCCAAAAGGGGCCACAAGGTTCTATCACACATGACAGTGCCTTCcggtgagtactaactagattgcaagcctgtttgtagactggttgacaagatg Alignment from CESAR GTGGTCGGCGAACAACTCATCTATGAGAACCAG-CTGGTGTCTGACATTGATGTCCAAAAGGGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCcg gataggatactcccatcccttcctggaattctccccctgtctcctaccagGTGGTTGGCAAACAACTCATTTATGAGAACCAGCCTGGTGTCTGACATTGATGTCCAAAAGGGGCCACAAGGTTCTATCACACATGACAGTGCCTTCcggtgagtactaactagattgcaagcctgtttgtagactggttgacaagatg Alignment from Spaln_aa2Genome GTGGTCGGCGAACAACTCATCTATGAGAACCAG-CTGGTGTCTGACATTGATGTCCAAAAGGGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCCG gataggatactcccatcccttcctggaattctccccctgtctcctaccagGTGGTTGGCAAACAACTCATTTATGAGAACCAGcCTGGTGTCTGACATTGATGTCCAAAAGGGGCCACAAGGTTCTATCACACATGACAGTGCCTTCCGgtgagtactaactagattgcaagcctgtttgtagactggttgacaagatg Alignment from Spaln_nt2Genome GTGGTCGGCGAACAACTCATCTATGAGAACCAG-CTGGTGTCTGACATTGATGTCCAAAAGGGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCCG gataggatactcccatcccttcctggaattctccccctgtctcctaccagGTGGTTGGCAAACAACTCATTTATGAGAACCAGCCTGGTGTCTGACATTGATGTCCAAAAGGGGCCACAAGGTTCTATCACACATGACAGTGCCTTCCGgtgagtactaactagattgcaagcctgtttgtagactggttgacaagatg Alignment from Pairagon GTGGTCGGCGAACAACTCATCTATGAGAACCAG-CTGGTGTCTGACATTGATGTCCAAAAGGGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCCG gataggatactcccatcccttcctggaattctccccctgtctcctaccagGTGGTTGGCAAACAACTCATTTATGAGAACCAGCCTGGTGTCTGACATTGATGTCCAAAAGGGGCCACAAGGTTCTATCACACATGACAGTGCCTTCCGgtgagtactaactagattgcaagcctgtttgtagactggttgacaagatg Alignment from Exonerate_protein2genome GTGGTCGGCGAACAACTCATCTATGAGAACCAG-CTGGTGTCTGACATTGATGTCCAAAAGGGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCCG gataggatactcccatcccttcctggaattctccccctgtctcctaccagGTGGTTGGCAAACAACTCATTTATGAGAACCAGCCTGGTGTCTGACATTGATGTCCAAAAGGGGCCACAAGGTTCTATCACACATGACAGTGCCTTCCGgtgagtactaactagattgcaagcctgtttgtagactggttgacaagatg Alignment from Exonerate_coding2genome GTGGTCGGCGAACAACTCATCTATGAGAACCAG-CTGGTGTCTGACATTGATGTCCAAAAGGGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCCG gataggatactcccatcccttcctggaattctccccctgtctcctaccagGTGGTTGGCAAACAACTCATTTATGAGAACCAGCCTGGTGTCTGACATTGATGTCCAAAAGGGGCCACAAGGTTCTATCACACATGACAGTGCCTTCCGgtgagtactaactagattgcaagcctgtttgtagactggttgacaagatg Alignment from GeneWise GTGGTCGGCGAACAACTCATCTATGAGAACCAG-CTGGTGTCTGACATTGATGTCCAAAAGGGGCCACAGGGTTCCATCACTCGGGACAGTGCCTTCCG gataggatactcccatcccttcctggaattctccccctgtctcctaccagGTGGTTGGCAAACAACTCATTTATGAGAACCAGCCTGGTGTCTGACATTGATGTCCAAAAGGGGCCACAAGGTTCTATCACACATGACAGTGCCTTCCGgtgagtactaactagattgcaagcctgtttgtagactggttgacaagatg #### Zp1_ID3069_3 --> 0 - 1 Original Alignment GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACT-CCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAg tactaagccaaagccttacccagcggctacaagatttgctcaatttccagGATGGACGATTTCACCTGAGAGTTTTCGTACAAGCTGTCTTACCAAATAGCCATGTAGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGACTCCCAGACCCCTACCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTGCACCCTATCCCTGAG---------GCTGGGTCTGGCCAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCTTCACTAGGACTTGGACCTACGGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAGCTAACTGAGCTGGACTCTGTAggtactgcaacctcaattgtgtatagactgagtattatggcctgtgagata Alignment from CESAR GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACT-CCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAg tactaagccaaagccttacccagcggctacaagatttgctcaatttccagGATGGACGATTTCACCTGAGAGTTTTCGTACAAGCTGTCTTACCAAATAGCCATGTAGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGACTCCCAGACCCCTACCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTGCACCCTATCCCTGAG---------GCTGGGTCTGGCCAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCTTCACTAGGACTTGGACCTACGGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAGCTAACTGAGCTGGACTCTGTAggtactgcaacctcaattgtgtatagactgagtattatggcctgtgagata Alignment from Spaln_aa2Genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCC-TACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG tactaagccaaagccttacccagcggctacaagatttgctcaatttccagGATGGACGATTTCACCTGAGAGTTTTCGTACAAGCTGTCTTACCAAATAGCCATGTAGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGACTCCCAGACCCcTACCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTGCACCCTATCCCTGAG---------GCTGGGTCTGGCCAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCTTCACTAGGACTTGGACCTACGGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAGCTAACTGAGCTGGACTCTGTAGgtactgcaacctcaattgtgtatagactgagtattatggcctgtgagata Alignment from Spaln_nt2Genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACT-CCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG tactaagccaaagccttacccagcggctacaagatttgctcaatttccagGATGGACGATTTCACCTGAGAGTTTTCGTACAAGCTGTCTTACCAAATAGCCATGTAGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGACTCCCAGACCCCTACCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTGCACCCTATCCCTGA---------GGCTGGGTCTGGCCA------TATCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCTTCACTAGGACTTGGACCTACGGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAGCTAACTGAGCTGGACTCTGTAGgtactgcaacctcaattgtgtatagactgagtattatggcctgtgagata Alignment from Pairagon GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACT-CCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAGGT------------------------------------------------ tactaagccaaagccttacccagcggctacaagatttgctcaatttccagGATGGACGATTTCACCTGAGAGTTTTCGTACAAGCTGTCTTACCAAATAGCCATGTAGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGACTCCCAGACCCCTACCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTGCACCCTATCCCTGA---------GGCTGGGTCTGGCCATA------TCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCTTCACTAGGACTTGGACCTACGGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAGCTAACTGAGCTGGACTCTGTAGGTACTGCAACCTCAATTGTGTATAGACTGAGTATTATGGCCTGTGAGATA Alignment from Exonerate_protein2genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACT-CCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG tactaagccaaagccttacccagcggctacaagatttgctcaatttccagGATGGACGATTTCACCTGAGAGTTTTCGTACAAGCTGTCTTACCAAATAGCCATGTAGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGACTCCCAGACCCCTACCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTGCACCCTATCCCTGAG---------GCTGGGTCTGGCCAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCTTCACTAGGACTTGGACCTACGGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAGCTAACTGAGCTGGACTCTGTAGgtactgcaacctcaattgtgtatagactgagtattatggcctgtgagata Alignment from Exonerate_coding2genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACT-CCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG tactaagccaaagccttacccagcggctacaagatttgctcaatttccagGATGGACGATTTCACCTGAGAGTTTTCGTACAAGCTGTCTTACCAAATAGCCATGTAGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGACTCCCAGACCCCTACCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTGCACCCTATCCCTGAG---------GCTGGGTCTGGCCAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCTTCACTAGGACTTGGACCTACGGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAGCTAACTGAGCTGGACTCTGTAGgtactgcaacctcaattgtgtatagactgagtattatggcctgtgagata Alignment from GeneWise GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTG-ACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG tactaagccaaagccttacccagcggctacaagatttgctcaatttccagGATGGACGATTTCACCTGAGAGTTTTCGTACAAGCTGTCTTACCAAATAGCCATGTAGATATAGCACAAGATGTCACACTGATCTGTCCTAAACCAGATCACACTGTGACTCCCAGACCCCTACCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTGCACCCTATCCCTGAG---------GCTGGGTCTGGCCAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCTTCACTAGGACTTGGACCTACGGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCCTGGGAGCTAACTGAGCTGGACTCTGTAGgtactgcaacctcaattgtgtatagactgagtattatggcctgtgagata ####