#### 1810009A15Rik_ID2454_3 --> 1 - 1 Original Alignment gTCCAGTGCTCGTGCC-AACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAg actataattggctgagtgagcctttttcttttattttcttcccctttcagg---TGCTCCCGTGCACAACATTACACTATCTGGGAAGAAGCGTAGGAAACTATTGCAGCAGATCCGACTTGCCCAGAAACAAGAAGCAGCCATGAAAggtaaggcttgaaagtggcactggattttcccaactttcttttatgactca Alignment from CESAR gTCCAGTGCTCGTGCC-AACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAg actataattggctgagtgagcctttttcttttattttcttcccctttcaggTGC---TCCCGTGCACAACATTACACTATCTGGGAAGAAGCGTAGGAAACTATTGCAGCAGATCCGACTTGCCCAGAAACAAGAAGCAGCCATGAAAggtaaggcttgaaagtggcactggattttcccaactttcttttatgactac Alignment from Spaln_aa2Genome GTGCTCGTGCC---AACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG actataattggctgagtgagcctttttcttttattttcttcccctttcagGTGCTCCCGTGCACAACATTACACTATCTGGGAAGAAGCGTAGGAAACTATTGCAGCAGATCCGACTTGCCCAGAAACAAGAAGCAGCCATGAAAGgtaaggcttgaaagtggcactggattttcccaactttcttttatgactca Alignment from Spaln_nt2Genome GTGCTC--GTGC-CAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG actataattggctgagtgagcctttttcttttattttcttcccctttcagGTGCTCCCGTGCACAACATTACACTATCTGGGAAGAAGCGTAGGAAACTATTGCAGCAGATCCGACTTGCCCAGAAACAAGAAGCAGCCATGAAAGgtaaggcttgaaagtggcactggattttcccaactttcttttatgactca Alignment from Pairagon GTCCAGTGCTCGTGC---------CAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG actataattggctgagtgagcctttttcttttattttcttcccctttcag-----------GTGCTCCCGTGCACAACATTACACTATCTGGGAAGAAGCGTAGGAAACTATTGCAGCAGATCCGACTTGCCCAGAAACAAGAAGCAGCCATGAAAGgtaaggcttgaaagtggcactggattttcccaactttcttttatgactca Alignment from Exonerate_protein2genome CCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG actataattggctgagtgagcctttttcttttattttcttcccctttcagGTGCTCCCGTGCACAACATTACACTATCTGGGAAGAAGCGTAGGAAACTATTGCAGCAGATCCGACTTGCCCAGAAACAAGAAGCAGCCATGAAAGgtaaggcttgaaagtggcactggattttcccaactttcttttatgactca Alignment from Exonerate_coding2genome CCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG actataattggctgagtgagcctttttcttttattttcttcccctttcagGTGCTCCCGTGCACAACATTACACTATCTGGGAAGAAGCGTAGGAAACTATTGCAGCAGATCCGACTTGCCCAGAAACAAGAAGCAGCCATGAAAGgtaaggcttgaaagtggcactggattttcccaactttcttttatgactca Alignment from GeneWise GTCCAGTGCTCGTGCCAACATCACGCTGTCTGGGAAGAAGCGCAGGAAACTCTTGCAGCAGATCCGACTTGCCCAGAAAGAAAAAGCAGCCATGGAAG actataattggctgagtgagcctttttcttttattttcttcccctttcagGTGCTCCCGTGCAC--AACATTACACTATCTGGGAAGAAGCGTAGGAAACTATTGCAGCAGATCCGACTTGCCCAGAAACAAGAAGCAGCCATGAAAGgtaaggcttgaaagtggcactggattttcccaactttcttttatgactca #### 9130011E15Rik_ID9675_6 --> 0 - 0 Original Alignment GTCACAGATAAT-ATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ctgacttatactagaaataaactaggagccactgtgtcttccttctccagGTCACAGATAATCATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGCATATTTGAAGCCATTTTACAGgtaagtttaactggcttatcctttatgtgtagtccttcattcaaaatttt Alignment from CESAR GTCACAGATAAT-ATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ctgacttatactagaaataaactaggagccactgtgtcttccttctccagGTCACAGATAATCATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGCATATTTGAAGCCATTTTACAGgtaagtttaactggcttatcctttatgtgtagtccttcattcaaaatttt Alignment from Spaln_aa2Genome GATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ctgacttatactagaaataaactaggagccactgtgtcttccttctccaggtcacagATAATCATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGCATATTTGAAGCCATTTTACAGgtaagtttaactggcttatcctttatgtgtagtccttcattcaaaatttt Alignment from Spaln_nt2Genome GTCACAGATAAT-ATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ctgacttatactagaaataaactaggagccactgtgtcttccttctccagGTCACAGATAATCATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGCATATTTGAAGCCATTTTACAGgtaagtttaactggcttatcctttatgtgtagtccttcattcaaaatttt Alignment from Pairagon GTCACAGATAAT-ATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ctgacttatactagaaataaactaggagccactgtgtcttccttctccagGTCACAGATAATCATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGCATATTTGAAGCCATTTTACAGgtaagtttaactggcttatcctttatgtgtagtccttcattcaaaatttt Alignment from Exonerate_protein2genome GTCACAGATAAT-ATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ctgacttatactagaaataaactaggagccactgtgtcttccttctccagGTCACAGATAATCATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGCATATTTGAAGCCATTTTACAGgtaagtttaactggcttatcctttatgtgtagtccttcattcaaaatttt Alignment from Exonerate_coding2genome GTCACAGATAAT-ATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ctgacttatactagaaataaactaggagccactgtgtcttccttctccagGTCACAGATAATCATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGCATATTTGAAGCCATTTTACAGgtaagtttaactggcttatcctttatgtgtagtccttcattcaaaatttt Alignment from GeneWise GATAATATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGTATATTCGAAGCAATTTTACAG ctgacttatactagaaataaactaggagccactgtgtcttccttctccaggtcacagATAATCATCAGCCAGAACACTATCCTGGAATATGTAATGATCAACAGCATATTTGAAGCCATTTTACAGgtaagtttaactggcttatcctttatgtgtagtccttcattcaaaatttt #### A630007B06Rik_ID12190_7 --> 0 - 0 Original Alignment GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAG-CTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG atgaatttgtttgatggcaaggtccaagaccaaggtgccttgtcccctagGAATCAGAAGAAATCAAGTCAAATGAGCCCGATGCGAAGCCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCGAGAAAAATCTGACCAGCTGGAAgtattgcagatttgtcttacactccataagacactctttctgctggggca Alignment from CESAR GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAG-CTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG atgaatttgtttgatggcaaggtccaagaccaaggtgccttgtcccctagGAATCAGAAGAAATCAAGTCAAATGAGCCCGATGCGAAGCCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCGAGAAAAATCTGACCAGCTGGAAgtattgcagatttgtcttacactccataagacactctttctgctggggca Alignment from Spaln_aa2Genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAG-CTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG atgaatttgtttgatggcaaggtccaagaccaaggtgccttgtcccctagGAATCAGAAGAAATCAAGTCAAATGAGCCCGATGCGAAGcCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCGAGAAAAATCTGACCAGCTGGAAgtattgcagatttgtcttacactccataagacactctttctgctggggca Alignment from Spaln_nt2Genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAGC-TCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG atgaatttgtttgatggcaaggtccaagaccaaggtgccttgtcccctagGAATCAGAAGAAATCAAGTCAAATGAGCCCGATGCGAAGCCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCGAGAAAAATCTGACCAGCTGGAAgtattgcagatttgtcttacactccataagacactctttctgctggggca Alignment from Pairagon GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAG-CTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG atgaatttgtttgatggcaaggtccaagaccaaggtgccttgtcccctagGAATCAGAAGAAATCAAGTCAAATGAGCCCGATGCGAAGCCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCGAGAAAAATCTGACCAGCTGGAAgtattgcagatttgtcttacactccataagacactctttctgctggggca Alignment from Exonerate_protein2genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAG-CTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG atgaatttgtttgatggcaaggtccaagaccaaggtgccttgtcccctagGAATCAGAAGAAATCAAGTCAAATGAGCCCGATGCGAAGCCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCGAGAAAAATCTGACCAGCTGGAAgtattgcagatttgtcttacactccataagacactctttctgctggggca Alignment from Exonerate_coding2genome GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAG-CTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG atgaatttgtttgatggcaaggtccaagaccaaggtgccttgtcccctagGAATCAGAAGAAATCAAGTCAAATGAGCCCGATGCGAAGCCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCGAGAAAAATCTGACCAGCTGGAAgtattgcagatttgtcttacactccataagacactctttctgctggggca Alignment from GeneWise GAATCTGAAGAAATTAAGTCAAATGAGCTTGATGCAAAG-CTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCAAGAGAAATCTGACCAGCTGGAG atgaatttgtttgatggcaaggtccaagaccaaggtgccttgtcccctagGAATCAGAAGAAATCAAGTCAAATGAGCCCGATGCGAAGCCTCAGAGTTACAAAAGGAGAACTTGAAAAACAAATGCGAGAAAAATCTGACCAGCTGGAAgtattgcagatttgtcttacactccataagacactctttctgctggggca #### AI846148_ID2143_3 --> 2 - 1 Original Alignment agTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTT-CCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCg gagtagcaagcgctaaagactcccagtcatgcctgcttcctctcttccagaaTCTGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCAGATCCGGTGAGGATGCCAGCAGAGATGATAGTGCTTTTAGATTCTCAAGGCAACCCATCTCTGCCCCACTAGGCTACGGCCTAGAGGACTCCGACCT---GAATTGCCAagtaaggcaccaagagttcttgagtttggtaggacatcatatagtagggca Alignment from CESAR agTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAG-AGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCg gagtagcaagcgctaaagactcccagtcatgcctgcttcctctcttccagaaTCTGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCAGATCCGGTGAGGATGCCAGCAGAGATGATAGTGCTTTTAGATTCTCAAGGCAACCCATCTCTGCCCCACTAGGCTACGGCCTAGAGGACTCCGACCT---GAATTGCCAagtaaggcaccaagagttcttgagtttggtaggacatcatatagtagggca Alignment from Spaln_aa2Genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAG-AGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagcaagcgctaaagactcccagtcatgcctgcttcctctcttccagAATCTGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCAGATCCGGTGAGGATGCCAGCAGAGATGATAGTGCTTTTAGATTCTCAAGGCAACCCATCTCTGCCCCACtAGGCTACGGCCTAGAGGACTCCGACCT---GAATTGCCAAgtaaggcaccaagagttcttgagtttggtaggacatcatatagtagggca Alignment from Spaln_nt2Genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCTAAG-AGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagcaagcgctaaagactcccagtcatgcctgcttcctctcttccagAATCTGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCAGATCCGGTGAGGATGCCAGCAGAGATGATAGTGCTTTTAGATTCTCAAGGCAACCCATCTCTGCCCCACTAGGCTACGGCCTAGAGGACTCCGACC---TGAATTGCCAAgtaaggcaccaagagttcttgagtttggtaggacatcatatagtagggca Alignment from Pairagon AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCT-TCCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagcaagcgctaaagactcccagtcatgcctgcttcctctcttccagAATCTGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCAGATCCGGTGAGGATGCCAGCAGAGATGATAGTGCTTTTAGATTCTCAAGGCAACCCATCTCTGCCCCACTAGGCTACGGCCTAGAGGACTCCGACC---TGAATTGCCAAgtaaggcaccaagagttcttgagtttggtaggacatcatatagtagggca Alignment from Exonerate_protein2genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTT-CCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagcaagcgctaaagactcccagtcatgcctgcttcctctcttccagAATCTGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCAGATCCGGTGAGGATGCCAGCAGAGATGATAGTGCTTTTAGATTCTCAAGGCAACCCATCTCTGCCCCACTAGGCTACGGCCTAGAGGACTCCGACCT---GAATTGCCAAgtaaggcaccaagagttcttgagtttggtaggacatcatatagtagggca Alignment from Exonerate_coding2genome AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTT-CCTAAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagcaagcgctaaagactcccagtcatgcctgcttcctctcttccagAATCTGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCAGATCCGGTGAGGATGCCAGCAGAGATGATAGTGCTTTTAGATTCTCAAGGCAACCCATCTCTGCCCCACTAGGCTACGGCCTAGAGGACTCCGACCT---GAATTGCCAAgtaaggcaccaagagttcttgagtttggtaggacatcatatagtagggca Alignment from GeneWise AGTCAGGCCAGGATGGCCAGCCAGACCCCATCTCCAACCCGGATCCTGTCAGGATGCCAGCAGAGATAGTGGTCCTCTTGGATTCCGAGGACAACCCATCCCTTCCT-AAGAGGCTCCGGCCCAGAGGACTCCGCCCCCTTGAGCTGCCCG gagtagcaagcgctaaagactcccagtcatgcctgcttcctctcttccagAATCTGGCCAGGATGGTCAGTCAGATCCCATCTCCAACCCAGATCCGGTGAGGATGCCAGCAGAGATGATAGTGCTTTTAGATTCTCAAGGCAACCCATCTCTGCCCCACTAGGCTACGGCCTAGAGGACTCCGACCT---GAATTGCCAAgtaaggcaccaagagttcttgagtttggtaggacatcatatagtagggca #### Acsl5_ID11602_7 --> 0 - 0 Original Alignment AATATAGGCAAAGAG-AACTTCAAAAAACCAGTG ttatccagctttaatgattctttttggtatgccctttccctcactcccagAATATAGGCAAAGAGCAACTTCAAGAAACCAGTGgtaagtcatatttctgctaattatgagctgcttctgcctgtgtgattcac Alignment from CESAR AATATAGGCAAAGAG-AACTTCAAAAAACCAGTG ttatccagctttaatgattctttttggtatgccctttccctcactcccagAATATAGGCAAAGAGCAACTTCAAGAAACCAGTGgtaagtcatatttctgctaattatgagctgcttctgcctgtgtgattcac Alignment from Spaln_aa2Genome AATATAGGCAAAGAGAACTTCAAAAAACCAGTG ttatccagctttaatgattctttttggtatgccctttccctcactcccagaatatag------GCAAAGAGCAACTTCAAGAAACCAGTGgtaagtcatatttctgctaattatgagctgcttctgcctgtgtgattcac Alignment from Spaln_nt2Genome AATATAGGCAAAGAG-AACTTCAAAAAACCAGTG ttatccagctttaatgattctttttggtatgccctttccctcactcccagAATATAGGCAAAGAGCAACTTCAAGAAACCAGTGgtaagtcatatttctgctaattatgagctgcttctgcctgtgtgattcac Alignment from Pairagon AATATAGGCAAAGAG-AACTTCAAAAAACCAGTG ttatccagctttaatgattctttttggtatgccctttccctcactcccagAATATAGGCAAAGAGCAACTTCAAGAAACCAGTGgtaagtcatatttctgctaattatgagctgcttctgcctgtgtgattcac Alignment from Exonerate_protein2genome AATATAGGCAAAGAG-AACTTCAAAAAACCAGTG ttatccagctttaatgattctttttggtatgccctttccctcactcccagAATATAGGCAAAGAGCAACTTCAAGAAACCAGTGgtaagtcatatttctgctaattatgagctgcttctgcctgtgtgattcac Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ttatccagctttaatgattctttttggtatgccctttccctcactcccagaatataggcaaagagcaacttcaagaaaccagtggtaagtcatatttctgctaattatgagctgcttctgcctgtgtgattcac #### Acsl5_ID11610_15 --> 2 - 0 Original Alignment gtCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTAC-TTTTCAGTAAACAACGAAGGCGAG gatacaaatgtgcttactctgcagttacccccgctgttcaccattcctaggtCATGTTGGTACTCCAGTAGCATGCAATTTTGTAAAACTTGAAGATGTAGCAGATATGAACTACCTTTTCAGTAAACAATAAAGGTGAGgtaactgagactgatacagcacctatttagtgcacatgggaaaaccttcc Alignment from CESAR gtCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTAC-TTTTCAGTAAACAACGAAGGCGAG gatacaaatgtgcttactctgcagttacccccgctgttcaccattcctaggtCATGTTGGTACTCCAGTAGCATGCAATTTTGTAAAACTTGAAGATGTAGCAGATATGAACTACCTTTTCAGTAAACAATAAAGGTGAGgtaactgagactgatacagcacctatttagtgcacatgggaaaaccttcc Alignment from Spaln_aa2Genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTAC-TTTTCAGTAAACAACGAAGGCGAG gatacaaatgtgcttactctgcagttacccccgctgttcaccattcctagGTCATGTTGGTACTCCAGTAGCATGCAATTTTGTAAAACTTGAAGATGTAGCAGATATGAACTACcTTTTCAGTAAACAATAAAGGTGAGgtaactgagactgatacagcacctatttagtgcacatgggaaaaccttcc Alignment from Spaln_nt2Genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTAC-TTTTCAGTAAACAACGAAGGCGAG gatacaaatgtgcttactctgcagttacccccgctgttcaccattcctagGTCATGTTGGTACTCCAGTAGCATGCAATTTTGTAAAACTTGAAGATGTAGCAGATATGAACTACCTTTTCAGTAAACAATAAAGGTGAGgtaactgagactgatacagcacctatttagtgcacatgggaaaaccttcc Alignment from Pairagon GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTA-CTTTTCAGTAAACAACGAAGGCGAG gatacaaatgtgcttactctgcagttacccccgctgttcaccattcctagGTCATGTTGGTACTCCAGTAGCATGCAATTTTGTAAAACTTGAAGATGTAGCAGATATGAACTACCTTTTCAGTAAACAATAAAGGTGAGgtaactgagactgatacagcacctatttagtgcacatgggaaaaccttcc Alignment from Exonerate_protein2genome GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTAC-TTTTCAGTAAACAACGAAGGCGAG gatacaaatgtgcttactctgcagttacccccgctgttcaccattcctagGTCATGTTGGTACTCCAGTAGCATGCAATTTTGTAAAACTTGAAGATGTAGCAGATATGAACTACCTTTTCAGTAAACAATAAAGGTGAGgtaactgagactgatacagcacctatttagtgcacatgggaaaaccttcc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTCATGTTGGGACTCCAGTGGCTTGCAATTTTGTAAAGCTGGAAGATGTGGCTGACATGAACTAC-TTTTCAGTAAACAACGAAGGCGAG gatacaaatgtgcttactctgcagttacccccgctgttcaccattcctagGTCATGTTGGTACTCCAGTAGCATGCAATTTTGTAAAACTTGAAGATGTAGCAGATATGAACTACCTTTTCAGTAAACAATAAAGGTGAGgtaactgagactgatacagcacctatttagtgcacatgggaaaaccttcc #### Actn3_ID691_19 --> 0 - 0 Original Alignment GACCGG AAGCGGAATGGGATGATG-GAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG GACCGGgtaagtgacttcacctgaattaaaaatgttgtctgtgttttcagAAGCGGAACGGGATGATGCGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaagaaccttagccagatctatcacaccattagcttacttatgttttgt Alignment from CESAR GACCGG AAGCGGAATGGGATGATG-GAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG GACCGGgtaaaggacttcacctgaattaaaaatgttgtctgtgttttcagAAGCGGAACGGGATGATGCGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaagaaccttagccagatctatcacaccattagcttacttatgttttgt Alignment from Spaln_aa2Genome GACCGG AAGCGGAATGGGATGATG-GAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG GACCGGgtaagtgacttcacctgaattaaaaatgttgtctgtgttttcagAAGCGGAACGGGATGATGcGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaagaaccttagccagatctatcacaccattagcttacttatgttttgt Alignment from Spaln_nt2Genome GACCGG AAGCGGAATGGGATGATG-GAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG GACCGGgtaagtgacttcacctgaattaaaaatgttgtctgtgttttcagAAGCGGAACGGGATGATGCGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaagaaccttagccagatctatcacaccattagcttacttatgttttgt Alignment from Pairagon GACCGG AAGCGGAATGGGATGATG-GAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG GACCGGgtaagtgacttcacctgaattaaaaatgttgtctgtgttttcagAAGCGGAACGGGATGATGCGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaagaaccttagccagatctatcacaccattagcttacttatgttttgt Alignment from Exonerate_protein2genome GACCGG AAGCGGAATGGGATGATG-GAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG GACCGGgtaagtgacttcacctgaattaaaaatgttgtctgtgttttcagAAGCGGAACGGGATGATGCGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaagaaccttagccagatctatcacaccattagcttacttatgttttgt Alignment from Exonerate_coding2genome GACCGG AAGCGGAATGGGATGATG-GAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG GACCGGgtaagtgacttcacctgaattaaaaatgttgtctgtgttttcagAAGCGGAACGGGATGATGCGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaagaaccttagccagatctatcacaccattagcttacttatgttttgt Alignment from GeneWise GACCGG AAGCGGAATGGGATGATG-GAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTACGATCTG GACCGGgtaagtgacttcacctgaattaaaaatgttgtctgtgttttcagAAGCGGAACGGGATGATGCGAGCCCGACGACTTCCGAGCTTGTCTCATCTCCATGGGTTATGATCTGgtaagaaccttagccagatctatcacaccattagcttacttatgttttgt #### Actn3_ID693_17 --> 0 - 0 Original Alignment GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATC-ATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtgatgggtttggagaccttactacgcccaacttcttttctagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAATATCCATCAATTACAAGAGCAACATCGACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaagtacccaaccataagaagagtactggctcccagatagttgcagtct Alignment from CESAR GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATC-ATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtgatgggtttggagaccttactacgcccaacttcttttctagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAATATCCATCAATTACAAGAGCAACATCGACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaagtacccaaccataagaagagtactggctcccagatagttgcagtct Alignment from Spaln_aa2Genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATC-ATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtgatgggtttggagaccttactacgcccaacttcttttctagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAATATCcATCAATTACAAGAGCAACATCGACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaagtacccaaccataagaagagtactggctcccagatagttgcagtct Alignment from Spaln_nt2Genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACAT-CATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtgatgggtttggagaccttactacgcccaacttcttttctagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAATATCCATCAATTACAAGAGCAACATCGACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaagtacccaaccataagaagagtactggctcccagatagttgcagtct Alignment from Pairagon GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACAT-CATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtgatgggtttggagaccttactacgcccaacttcttttctagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAATATCCATCAATTACAAGAGCAACATCGACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaagtacccaaccataagaagagtactggctcccagatagttgcagtct Alignment from Exonerate_protein2genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATC-ATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtgatgggtttggagaccttactacgcccaacttcttttctagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAATATCCATCAATTACAAGAGCAACATCGACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaagtacccaaccataagaagagtactggctcccagatagttgcagtct Alignment from Exonerate_coding2genome GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATC-ATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtgatgggtttggagaccttactacgcccaacttcttttctagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAATATCCATCAATTACAAGAGCAACATCGACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaagtacccaaccataagaagagtactggctcccagatagttgcagtct Alignment from GeneWise GAAGTAGGACGGCTGGCAGCTGGGCTGGCCGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGGCAGCAGGAACAGAACATC-ATCAATTACAAGAGCAACATCGACCGGCTGGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAG gagcaaagtgatgggtttggagaccttactacgcccaacttcttttctagGAAGTAGGACGGCTGGCAGCAGGGCTAGCTGGCTCTCTGGAGGAGCAGATGGCAGGTCTGCGCCAGCAGGAACAGAATATCCATCAATTACAAGAGCAACATCGACCGGCTAGAGGGTGACCACCAGCTGCTGCAGGAGAGCCTAGTCTTTGACAACAAGCACACAGTCTACAGCATGGAGgtaagtacccaaccataagaagagtactggctcccagatagttgcagtct #### Actn3_ID694_16 --> 0 - 0 Original Alignment GTCAGA---AAGCTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAG-AGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG tccagtctaagcaacaccttactatagtgatgggtttttttttttttcagGTCAGAAAAAAACTTGCCCCTGCCCATGACCAGACATTCCAAGAGAAGCTAGCCCGGCAGCAAGTTAATGAGCAGGTCACAGTGGCAGTTTACAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGCAAAGGTGGAGgtaagggttgggagactgtgctcatggagatcagcacggagcaaagtgat Alignment from CESAR GTCAGA---AAGCTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAG-AGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG tccagtctaagcaacaccttactatagtgatgggtttttttttttttcagGTCAGAAAAAAACTTGCCCCTGCCCATGACCAGACATTCCAAGAGAAGCTAGCCCGGCAGCAAGTTAATGAGCAGGTCACAGTGGCAGTTTACAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGCAAAGGTGGAGgtaagggttgggagactgtgctcatggagatcagcacggagcaaagtgat Alignment from Spaln_aa2Genome GTCAGA---AAGCTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAG-AGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG tccagtctaagcaacaccttactatagtgatgggtttttttttttttcagGTCAGAAAAAAACTTGCCCCTGCCCATGACCAGACATTCCAAGAGAAGCTAGCCCGGCAGCAAGTTAATGAGcAGGTCACAGTGGCAGTTTACAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGCAAAGGTGGAGgtaagggttgggagactgtgctcatggagatcagcacggagcaaagtgat Alignment from Spaln_nt2Genome GTCAGAAAG---CTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTC-CGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG tccagtctaagcaacaccttactatagtgatgggtttttttttttttcagGTCAGAAAAAAACTTGCCCCTGCCCATGACCAGACATTCCAAGAGAAGCTAGCCCGGCAGCAAGTTAATGAGCAGGTCACAGTGGCAGTTTACAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGCAAAGGTGGAGgtaagggttgggagactgtgctcatggagatcagcacggagcaaagtgat Alignment from Pairagon GTCAGAAA-------------GCTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAG-AGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG tccagtctaagcaacaccttactatagtgatgggtttttttttttttcagGTCAGAAAAAAACTTGCCCCTGC----------CCATGACCAGACATTCCAAGAGAAGCTAGCCCGGCAGCAAGTTAATGAGCAGGTCACAGTGGCAGTTTACAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGCAAAGGTGGAGgtaagggttgggagactgtgctcatggagatcagcacggagcaaagtgat Alignment from Exonerate_protein2genome GTCAGA---AAGCTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAG-AGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG tccagtctaagcaacaccttactatagtgatgggtttttttttttttcagGTCAGAAAAAAACTTGCCCCTGCCCATGACCAGACATTCCAAGAGAAGCTAGCCCGGCAGCAAGTTAATGAGCAGGTCACAGTGGCAGTTTACAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGCAAAGGTGGAGgtaagggttgggagactgtgctcatggagatcagcacggagcaaagtgat Alignment from Exonerate_coding2genome GTCAGA---AAGCTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAG-AGGCTCCGGCGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG tccagtctaagcaacaccttactatagtgatgggtttttttttttttcagGTCAGAAAAAAACTTGCCCCTGCCCATGACCAGACATTCCAAGAGAAGCTAGCCCGGCAGCAAGTTAATGAGCAGGTCACAGTGGCAGTTTACAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGCAAAGGTGGAGgtaagggttgggagactgtgctcatggagatcagcacggagcaaagtgat Alignment from GeneWise GTCAGA---AAGCTGGTACCCAGCCGTGACCAGACACTGCAGGAGGAGCTGGCCCGGCAGCAGGTGAACGAGAGGCTCCGG-CGACAGTTTGCAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGGAAAAGTGGAG tccagtctaagcaacaccttactatagtgatgggtttttttttttttcagGTCAGAAAAAAACTTGCCCCTGCCCATGACCAGACATTCCAAGAGAAGCTAGCCCGGCAGCAAGTTAATGAGCAGGTCACAGTGGCAGTTTACAGCCCAGGCTAATGCCATAGGACCCTGGATCCAGGCAAAGGTGGAGgtaagggttgggagactgtgctcatggagatcagcacggagcaaagtgat #### Actn3_ID696_14 --> 0 - 0 Original Alignment AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCC-CCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTC---GTGCACTCTGTGGAGGAGACCCAG aatgtctgcagtctgagaagaatctggaacctgcttttaacttctcccagAAGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTAGAACTTGCTCGCAGGGCAGCTCTCTTTCAATAACTGGTTTGATGGTGCTATTGAGGACCTGCATGATGTGTGGCTAGTGGTTCACTCCGTGGAGGAGACAGAGgtgaaggaatacactaggcagggaatctttggatgcacttgtggcctata Alignment from CESAR AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCC-CCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTG---CACTCTGTGGAGGAGACCCAG aatgtctgcagtctgagaagaatctggaacctgcttttaacttctcccagAAGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTAGAACTTGCTCGCAGGGCAGCTCTCTTTCAATAACTGGTTTGATGGTGCTATTGAGGACCTGCATGATGTGTGGCTAGTGGTTCACTCCGTGGAGGAGACAGAGgtgaaggaatacactaggcagggaatctttggatgcacttgtggcctata Alignment from Spaln_aa2Genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTTC-AATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGG---CTCGTGCACTCTGTGGAGGAGACCCAG aatgtctgcagtctgagaagaatctggaacctgcttttaacttctcccagAAGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTAGAACTTGCTCGCAGGGCAGCTCTCTTTcAATAACTGGTTTGATGGTGCTATTGAGGACCTGCATGATGTGTGGCTAGTGGTTCACTCCGTGGAGGAGACAGAGgtgaaggaatacactaggcagggaatctttggatgcacttgtggcctata Alignment from Spaln_nt2Genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCCCCCTT-CAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTG---CACTCTGTGGAGGAGACCCAG aatgtctgcagtctgagaagaatctggaacctgcttttaacttctcccagAAGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTAGAACTTGCTCGCAGGGCAGCTCTCTTTCAATAACTGGTTTGATGGTGCTATTGAGGACCTGCATGATGTGTGGCTAGTGGTTCACTCCGTGGAGGAGACAGAGgtgaaggaatacactaggcagggaatctttggatgcacttgtggcctata Alignment from Pairagon AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGC-CCCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTCGTG---CACTCTGTGGAGGAGACCCAG aatgtctgcagtctgagaagaatctggaacctgcttttaacttctcccagAAGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTAGAACTTGCTCGCAGGGCAGCTCTCTTTCAATAACTGGTTTGATGGTGCTATTGAGGACCTGCATGATGTGTGGCTAGTGGTTCACTCCGTGGAGGAGACAGAGgtgaaggaatacactaggcagggaatctttggatgcacttgtggcctata Alignment from Exonerate_protein2genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCC-CCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTC---GTGCACTCTGTGGAGGAGACCCAG aatgtctgcagtctgagaagaatctggaacctgcttttaacttctcccagAAGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTAGAACTTGCTCGCAGGGCAGCTCTCTTTCAATAACTGGTTTGATGGTGCTATTGAGGACCTGCATGATGTGTGGCTAGTGGTTCACTCCGTGGAGGAGACAGAGgtgaaggaatacactaggcagggaatctttggatgcacttgtggcctata Alignment from Exonerate_coding2genome AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCC-CCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTC---GTGCACTCTGTGGAGGAGACCCAG aatgtctgcagtctgagaagaatctggaacctgcttttaacttctcccagAAGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTAGAACTTGCTCGCAGGGCAGCTCTCTTTCAATAACTGGTTTGATGGTGCTATTGAGGACCTGCATGATGTGTGGCTAGTGGTTCACTCCGTGGAGGAGACAGAGgtgaaggaatacactaggcagggaatctttggatgcacttgtggcctata Alignment from GeneWise AGGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTGGAGTTTGCTCGGCGGGCAGCC-CCCTTCAATAACTGGCTGGATGGGGCTATTGAGGACCTGCAGGATGTGTGGCTC---GTGCACTCTGTGGAGGAGACCCAG aatgtctgcagtctgagaagaatctggaacctgcttttaacttctcccagAAGATGGAGAAGCTCCTGGAGACCATTGACCAGCTGCAGCTAGAACTTGCTCGCAGGGCAGCTCTCTTTCAATAACTGGTTTGATGGTGCTATTGAGGACCTGCATGATGTGTGGCTAGTGGTTCACTCCGTGGAGGAGACAGAGgtgaaggaatacactaggcagggaatctttggatgcacttgtggcctata #### Actn3_ID700_10 --> 0 - 0 Original Alignment CTGTTGGAGTGGATCCGCCGCACTGTCCCA-TGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG tcagtataagtgaggtggggcttggaaatttttttttcttttccttcaagCTGTTAGAGTGGATTTGCCGGACAGTTCTACTGGCTAGAAAACCGTGTAGCTGAACCTAGCATGAGTGCAACACAGCACAAGCTGGAAGACTTCCAAGACTATCAACACCTACAAAAGCCACCCTGTTTCCAGGAGACATGCCAGCTAGAGATCAACTTCAATACACTGCAGGCTAAGTCTCGTCTGAGCCACCAACCTGCATTCATGCCCTCTGAAGGCAAGTTAGTTTCCgtgagtccaacaaggtatcccgcatgttccagctgtgcctacatgcccac Alignment from CESAR CTGTTGGAGTGGATCCGCCGCACTGTCCCA-TGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG tcagtataagtgaggtggggcttggaaatttttttttcttttccttcaagCTGTTAGAGTGGATTTGCCGGACAGTTCTACTGGCTAGAAAACCGTGTAGCTGAACCTAGCATGAGTGCAACACAGCACAAGCTGGAAGACTTCCAAGACTATCAACACCTACAAAAGCCACCCTGTTTCCAGGAGACATGCCAGCTAGAGATCAACTTCAATACACTGCAGGCTAAGTCTCGTCTGAGCCACCAACCTGCATTCATGCCCTCTGAAGGCAAGTTAGTTTCCgtgagtccaacaaggtatcccgcatgttccagctgtgcctacatgcccac Alignment from Spaln_aa2Genome CTGTTGGAGTGGATCCGCCGCACTGTCCCA-TGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG tcagtataagtgaggtggggcttggaaatttttttttcttttccttcaagCTGTTAGAGTGGATTTGCCGGACAGTTCTAcTGGCTAGAAAACCGTGTAGCTGAACCTAGCATGAGTGCAACACAGCACAAGCTGGAAGACTTCCAAGACTATCAACACCTACAAAAGCCACCCTGTTTCCAGGAGACATGCCAGCTAGAGATCAACTTCAATACACTGCAGGCTAAGTCTCGTCTGAGCCACCAACCTGCATTCATGCCCTCTGAAGGCAAGTTAGTTTCCgtgagtccaacaaggtatcccgcatgttccagctgtgcctacatgcccac Alignment from Spaln_nt2Genome CTGTTGGAGTGGATCCGCCGCACTGTCCCA-TGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG tcagtataagtgaggtggggcttggaaatttttttttcttttccttcaagCTGTTAGAGTGGATTTGCCGGACAGTTCTACTGGCTAGAAAACCGTGTAGCTGAACCTAGCATGAGTGCAACACAGCACAAGCTGGAAGACTTCCAAGACTATCAACACCTACAAAAGCCACCCTGTTTCCAGGAGACATGCCAGCTAGAGATCAACTTCAATACACTGCAGGCTAAGTCTCGTCTGAGCCACCAACCTGCATTCATGCCCTCTGAAGGCAAGTTAGTTTCCgtgagtccaacaaggtatcccgcatgttccagctgtgcctacatgcccac Alignment from Pairagon CTGTTGGAGTGGATCCGCCGCACTGTCCCA-TGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG tcagtataagtgaggtggggcttggaaatttttttttcttttccttcaagCTGTTAGAGTGGATTTGCCGGACAGTTCTACTGGCTAGAAAACCGTGTAGCTGAACCTAGCATGAGTGCAACACAGCACAAGCTGGAAGACTTCCAAGACTATCAACACCTACAAAAGCCACCCTGTTTCCAGGAGACATGCCAGCTAGAGATCAACTTCAATACACTGCAGGCTAAGTCTCGTCTGAGCCACCAACCTGCATTCATGCCCTCTGAAGGCAAGTTAGTTTCCgtgagtccaacaaggtatcccgcatgttccagctgtgcctacatgcccac Alignment from Exonerate_protein2genome CTGTTGGAGTGGATCCGCCGCACTGTC-CCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG tcagtataagtgaggtggggcttggaaatttttttttcttttccttcaagCTGTTAGAGTGGATTTGCCGGACAGTTCTACTGGCTAGAAAACCGTGTAGCTGAACCTAGCATGAGTGCAACACAGCACAAGCTGGAAGACTTCCAAGACTATCAACACCTACAAAAGCCACCCTGTTTCCAGGAGACATGCCAGCTAGAGATCAACTTCAATACACTGCAGGCTAAGTCTCGTCTGAGCCACCAACCTGCATTCATGCCCTCTGAAGGCAAGTTAGTTTCCgtgagtccaacaaggtatcccgcatgttccagctgtgcctacatgcccac Alignment from Exonerate_coding2genome CTGTTGGAGTGGATCCGCCGCACTGTC-CCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG tcagtataagtgaggtggggcttggaaatttttttttcttttccttcaagCTGTTAGAGTGGATTTGCCGGACAGTTCTACTGGCTAGAAAACCGTGTAGCTGAACCTAGCATGAGTGCAACACAGCACAAGCTGGAAGACTTCCAAGACTATCAACACCTACAAAAGCCACCCTGTTTCCAGGAGACATGCCAGCTAGAGATCAACTTCAATACACTGCAGGCTAAGTCTCGTCTGAGCCACCAACCTGCATTCATGCCCTCTGAAGGCAAGTTAGTTTCCgtgagtccaacaaggtatcccgcatgttccagctgtgcctacatgcccac Alignment from GeneWise CTGTTGGAGTGGATCCGCCGCACTGTC-CCATGGCTAGAGAACCGCGTGGGCGAACCCAGCATGAGTGCCATGCAGCGCAAGCTGGAGGACTTCCGAGACTATCGACGCCTGCACAAGCCTCCCCGTGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGTTGCGCCTGAGCCACCGACCCGCTTTCATGCCCTCCGAGGGCAAGCTGGTTTCG tcagtataagtgaggtggggcttggaaatttttttttcttttccttcaagCTGTTAGAGTGGATTTGCCGGACAGTTCTACTGGCTAGAAAACCGTGTAGCTGAACCTAGCATGAGTGCAACACAGCACAAGCTGGAAGACTTCCAAGACTATCAACACCTACAAAAGCCACCCTGTTTCCAGGAGACATGCCAGCTAGAGATCAACTTCAATACACTGCAGGCTAAGTCTCGTCTGAGCCACCAACCTGCATTCATGCCCTCTGAAGGCAAGTTAGTTTCCgtgagtccaacaaggtatcccgcatgttccagctgtgcctacatgcccac #### Actn3_ID705_5 --> 2 - 2 Original Alignment agACCTCAGCCAAAGAAGGCTTGCTTCTCTGG-TGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCag tgcaaaatgcatagttgggccagatcattcacctcccactttcctctcagagGCTGCATCCAAACAGGGCTTGTTCCTCTGGCTGCCAGCGGAAAATAGCTCCATACCGCAATGTCAATGTACAGAACTTCCATACTaggtaggactgagtatagtagttgggatctatgaaagtgaaggatggaatag Alignment from CESAR agACCTCAGCCAAAGAAGGCTTGCTTCTCTGG-TGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCag tgcaaaatgcatagttgggccagatcattcacctcccactttcctctcagagGCTGCATCCAAACAGGGCTTGTTCCTCTGGCTGCCAGCGGAAAATAGCTCCATACCGCAATGTCAATGTACAGAACTTCCATACTaggtaggactgagtatagtagttgggatctatgaaagtgaaggatggaatag Alignment from Spaln_aa2Genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGG-TGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG tgcaaaatgcatagttgggccagatcattcacctcccactttcctctcagAGGCTGCATCCAAACAGGGCTTGTTCCTCTGGcTGCCAGCGGAAAATAGCTCCATACCGCAATGTCAATGTACAGAACTTCCATACTAGgtaggactgagtatagtagttgggatctatgaaagtgaaggatggaatag Alignment from Spaln_nt2Genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGG-TGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG tgcaaaatgcatagttgggccagatcattcacctcccactttcctctcagAGGCTGCATCCAAACAGGGCTTGTTCCTCTGGCTGCCAGCGGAAAATAGCTCCATACCGCAATGTCAATGTACAGAACTTCCATACTAGgtaggactgagtatagtagttgggatctatgaaagtgaaggatggaatag Alignment from Pairagon AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGG-TGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG tgcaaaatgcatagttgggccagatcattcacctcccactttcctctcagAGGCTGCATCCAAACAGGGCTTGTTCCTCTGGCTGCCAGCGGAAAATAGCTCCATACCGCAATGTCAATGTACAGAACTTCCATACTAGgtaggactgagtatagtagttgggatctatgaaagtgaaggatggaatag Alignment from Exonerate_protein2genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGG-TGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG tgcaaaatgcatagttgggccagatcattcacctcccactttcctctcagAGGCTGCATCCAAACAGGGCTTGTTCCTCTGGCTGCCAGCGGAAAATAGCTCCATACCGCAATGTCAATGTACAGAACTTCCATACTAGgtaggactgagtatagtagttgggatctatgaaagtgaaggatggaatag Alignment from Exonerate_coding2genome AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGG-TGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG tgcaaaatgcatagttgggccagatcattcacctcccactttcctctcagAGGCTGCATCCAAACAGGGCTTGTTCCTCTGGCTGCCAGCGGAAAATAGCTCCATACCGCAATGTCAATGTACAGAACTTCCATACTAGgtaggactgagtatagtagttgggatctatgaaagtgaaggatggaatag Alignment from GeneWise AGACCTCAGCCAAAGAAGGCTTGCTTCTCTGG-TGTCAGCGGAAAACAGCACCGTACCGCAATGTCAACGTACAGAACTTCCATACCAG tgcaaaatgcatagttgggccagatcattcacctcccactttcctctcagAGGCTGCATCCAAACAGGGCTTGTTCCTCTGGCTGCCAGCGGAAAATAGCTCCATACCGCAATGTCAATGTACAGAACTTCCATACTAGgtaggactgagtatagtagttgggatctatgaaagtgaaggatggaatag #### Actr1a_ID9872_8 --> 0 - 1 Original Alignment ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAA-GGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAg gcatgagttggtggtcacagtctgccaagagatgttcctttctctcacagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTGAGGAGAGCGAACGGCATCCACGAAGTGCTAGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTTCTCTCAGGAGGTTCTACCCTGTTTAAAggtgagtgtaatcacttttggacaaatgttagaaaccacctgatcaattca Alignment from CESAR ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAA-GGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAg gcatgagttggtggtcacagtctgccaagagatgttcctttctctcacagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTGAGGAGAGCGAACGGCATCCACGAAGTGCTAGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTTCTCTCAGGAGGTTCTACCCTGTTTAAAggtgagtgtaatcacttttggacaaatgttagaaaccacctgatcaattca Alignment from Spaln_aa2Genome ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAA-GGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAG gcatgagttggtggtcacagtctgccaagagatgttcctttctctcacagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTGAGGAGAGCGAAcGGCATCCACGAAGTGCTAGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTTCTCTCAGGAGGTTCTACCCTGTTTAAAGgtgagtgtaatcacttttggacaaatgttagaaaccacctgatcaattca Alignment from Spaln_nt2Genome ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAA-GGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAG gcatgagttggtggtcacagtctgccaagagatgttcctttctctcacagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTGAGGAGAGCGAACGGCATCCACGAAGTGCTAGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTTCTCTCAGGAGGTTCTACCCTGTTTAAAGgtgagtgtaatcacttttggacaaatgttagaaaccacctgatcaattca Alignment from Pairagon ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAA-GGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAG gcatgagttggtggtcacagtctgccaagagatgttcctttctctcacagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTGAGGAGAGCGAACGGCATCCACGAAGTGCTAGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTTCTCTCAGGAGGTTCTACCCTGTTTAAAGgtgagtgtaatcacttttggacaaatgttagaaaccacctgatcaattca Alignment from Exonerate_protein2genome ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAA-GGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAG gcatgagttggtggtcacagtctgccaagagatgttcctttctctcacagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTGAGGAGAGCGAACGGCATCCACGAAGTGCTAGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTTCTCTCAGGAGGTTCTACCCTGTTTAAAGgtgagtgtaatcacttttggacaaatgttagaaaccacctgatcaattca Alignment from Exonerate_coding2genome ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGTGAA-GGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAG gcatgagttggtggtcacagtctgccaagagatgttcctttctctcacagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTGAGGAGAGCGAACGGCATCCACGAAGTGCTAGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTTCTCTCAGGAGGTTCTACCCTGTTTAAAGgtgagtgtaatcacttttggacaaatgttagaaaccacctgatcaattca Alignment from GeneWise ATTGGCCCTTCCCGGTTCCGGGCCCCTGAGCTGCTGTTCAGGCCGGACTTGATTGGCGAGGAGAGT-GAAGGCATCCACGAGGTGCTGGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTCCTCTCAGGAGGTTCTACCCTGTTCAAAG gcatgagttggtggtcacagtctgccaagagatgttcctttctctcacagATAGGCCCTTCCCGTTTCCGGGCCCCTGAGCTGTTGTTCAGGCCAGACTTGATTGGTGAGGAGAGCGAACGGCATCCACGAAGTGCTAGTGTTTGCTATCCAGAAGTCAGACATGGATTTACGGCGTACACTGTTTTCCAACATTGTTCTCTCAGGAGGTTCTACCCTGTTTAAAGgtgagtgtaatcacttttggacaaatgttagaaaccacctgatcaattca #### Adrbk1_ID477_18 --> 2 - 0 Original Alignment acTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTG-TTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG aaggcaagcatacagtgattttgtcatattccttactcttttttttctagacTATGCCTTAGATAAGGACTGCATAGTAGATGGTTATATGTCTGAGATGGGCAACCCTTTCCTGACCCAGTGGCAACAGAGATACTTCTACTTGCTTCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtgagtgaaaggacaggcagagcgttaatgaccatctatgtctcttatga Alignment from CESAR acTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTG-TTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG aaggcaagcatacagtgattttgtcatattccttactcttttttttctagacTATGCCTTAGATAAGGACTGCATAGTAGATGGTTATATGTCTGAGATGGGCAACCCTTTCCTGACCCAGTGGCAACAGAGATACTTCTACTTGCTTCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtgagtgaaaggacaggcagagcgttaatgaccatctatgtctcttatga Alignment from Spaln_aa2Genome ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGTTCCCC-AACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG aaggcaagcatacagtgattttgtcatattccttactcttttttttctagACTATGCCTTAGATAAGGACTGCATAGTAGATGGTTATATGTCTGAGATGGGCAACCCTTTCCTGACCCAGTGGCAACAGAGATACTTCTACTTGCTTCCCcAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtgagtgaaaggacaggcagagcgttaatgaccatctatgtctcttatga Alignment from Spaln_nt2Genome ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTGT-TCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG aaggcaagcatacagtgattttgtcatattccttactcttttttttctagACTATGCCTTAGATAAGGACTGCATAGTAGATGGTTATATGTCTGAGATGGGCAACCCTTTCCTGACCCAGTGGCAACAGAGATACTTCTACTTGCTTCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtgagtgaaaggacaggcagagcgttaatgaccatctatgtctcttatga Alignment from Pairagon ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTG-TTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG aaggcaagcatacagtgattttgtcatattccttactcttttttttctagACTATGCCTTAGATAAGGACTGCATAGTAGATGGTTATATGTCTGAGATGGGCAACCCTTTCCTGACCCAGTGGCAACAGAGATACTTCTACTTGCTTCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtgagtgaaaggacaggcagagcgttaatgaccatctatgtctcttatga Alignment from Exonerate_protein2genome ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTG-TTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG aaggcaagcatacagtgattttgtcatattccttactcttttttttctagACTATGCCTTAGATAAGGACTGCATAGTAGATGGTTATATGTCTGAGATGGGCAACCCTTTCCTGACCCAGTGGCAACAGAGATACTTCTACTTGCTTCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtgagtgaaaggacaggcagagcgttaatgaccatctatgtctcttatga Alignment from Exonerate_coding2genome ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTACTTG-TTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG aaggcaagcatacagtgattttgtcatattccttactcttttttttctagACTATGCCTTAGATAAGGACTGCATAGTAGATGGTTATATGTCTGAGATGGGCAACCCTTTCCTGACCCAGTGGCAACAGAGATACTTCTACTTGCTTCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtgagtgaaaggacaggcagagcgttaatgaccatctatgtctcttatga Alignment from GeneWise ACTATGCCCTGGGTAAGGACTGCATCGTGCATGGCTACATGTCCAAGATGGGCAACCCCTTCCTGACCCAGTGGCAGCGGCGATACTTCTAC-TTGTTCCCCAACCGGCTCGAGTGGAGGGGTGAAGGCGAGGCTCCG aaggcaagcatacagtgattttgtcatattccttactcttttttttctagACTATGCCTTAGATAAGGACTGCATAGTAGATGGTTATATGTCTGAGATGGGCAACCCTTTCCTGACCCAGTGGCAACAGAGATACTTCTACTTGCTTCCCCAACCGGCTTGAATGGAGGGGTGAGGGTGAGGCTCCAgtgagtgaaaggacaggcagagcgttaatgaccatctatgtctcttatga #### Adrbk1_ID478_17 --> 0 - 1 Original Alignment TTACTGGACAGT-GACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGg cttattgcttagatctacctgtagcatcgttctctttgttccttctgcagTTACTGGACAGTCGACCAGGAGTTGTACCGCATATTCCCTCTTACCATTGCTGAGTGGTGGCAACAGGAGGTGGCAGAGACTGTCTTT---ACCAGCAATGCTGAAACAGACCGTCTTGAGGCACAA------------AACAAACAACTGGGTCAGGAGGAAggtgagtacatgccacccatcttagactgcaggagtgaaggctgacaaggc Alignment from CESAR TTACTGGACAGT-GACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGg cttattgcttagatctacctgtagcatcgttctctttgttccttctgcagTTACTGGACAGTCGACCAGGAGTTGTACCGCATATTCCCTCTTACCATTGCTGAGTGGTGGCAACAGGAGGTGGCAGAGACTGTCTTT---ACCAGCAATGCTGAAACAGACCGTCTTGAGGCACAA------------AACAAACAACTGGGTCAGGAGGAAggtgagtacatgccacccatcttagactgcaggagtgaaggctgacaaggc Alignment from Spaln_aa2Genome TTACTGGACAGT-GACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG cttattgcttagatctacctgtagcatcgttctctttgttccttctgcagTTACTGGACAGTcGACCAGGAGTTGTACCGCATATTCCCTCTTACCATTGCTGAGTGGTGGCAACAGGAGGTGGCAGAGACTGTCTTT---ACCAGCAATGCTGAAACAGACCGTCTTGAG------------GCACAAAACAAACAACTGGGTCAGGAGGAAGgtgagtacatgccacccatcttagactgcaggagtgaaggctgacaaggc Alignment from Spaln_nt2Genome TTACTGGACAGT-GACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG cttattgcttagatctacctgtagcatcgttctctttgttccttctgcagTTACTGGACAGTCGACCAGGAGTTGTACCGCATATTCCCTCTTACCATTGCTGAGTGGTGGCAACAGGAGGTGGCAGAGACTGTCTTT---ACCAGCAATGCTGAAACAGACCGTCTTGAGGCAC------------AAAACAAACAACTGGGTCAGGAGGAAGgtgagtacatgccacccatcttagactgcaggagtgaaggctgacaaggc Alignment from Pairagon TTACTGGACAGT-GACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG cttattgcttagatctacctgtagcatcgttctctttgttccttctgcagTTACTGGACAGTCGACCAGGAGTTGTACCGCATATTCCCTCTTACCATTGCTGAGTGGTGGCAACAGGAGGTGGCAGAGACTGTCTT---TACCAGCAATGCTGAAACAGACCGTCTTGAGGCAC------------AAAACAAACAACTGGGTCAGGAGGAAGgtgagtacatgccacccatcttagactgcaggagtgaaggctgacaaggc Alignment from Exonerate_protein2genome TTACTGGACAGT-GACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG cttattgcttagatctacctgtagcatcgttctctttgttccttctgcagTTACTGGACAGTCGACCAGGAGTTGTACCGCATATTCCCTCTTACCATTGCTGAGTGGTGGCAACAGGAGGTGGCAGAGACTGTCTTT---ACCAGCAATGCTGAAACAGACCGTCTTGAG------------GCACAAAACAAACAACTGGGTCAGGAGGAAGgtgagtacatgccacccatcttagactgcaggagtgaaggctgacaaggc Alignment from Exonerate_coding2genome TTACTGGACAGT-GACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG cttattgcttagatctacctgtagcatcgttctctttgttccttctgcagTTACTGGACAGTCGACCAGGAGTTGTACCGCATATTCCCTCTTACCATTGCTGAGTGGTGGCAACAGGAGGTGGCAGAGACTGTCTTT---ACCAGCAATGCTGAAACAGACCGTCTTGAG------------GCACAAAACAAACAACTGGGTCAGGAGGAAGgtgagtacatgccacccatcttagactgcaggagtgaaggctgacaaggc Alignment from GeneWise TGGACAGTGACCAGGAACTGTACCGCAACTTCCCTCTCACCATCTCTGAGCGGTGGCAACAGGAGGTGGCAGAGACTGTCTTTGATACCATCAATGCTGAAACAGACCGGCTGGAGGCACGAAAGAAGGCCAAAAACAAACAGCTGGGCCACGAGGAGG cttattgcttagatctacctgtagcatcgttctctttgttccttctgcagttactggacagTCGAC------CAGGAGTTGTACCGCATATTCCCTCTTACCATTGCTGAGTGGTGGCAACAGGAGGTGGCAGAGACTGTCTTT---ACCAGCAATGCTGAAACAGACCGTCTTGAGGCACAA------------AACAAACAACTGGGTCAGGAGGAAGgtgagtacatgccacccatcttagactgcaggagtgaaggctgacaaggc #### Adrbk1_ID479_16 --> 0 - 0 Original Alignment TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGC-TCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctctggtgccactctcttctacaatgaaattttgcttatgtatttgcagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtgaggaacccgcatagctcaggatcctgtttctggatcctgaagctgaa Alignment from CESAR TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGC-TCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctctggtgccactctcttctacaatgaaattttgcttatgtatttgcagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtgaggaacccgcatagctcaggatcctgtttctggatcctgaagctgaa Alignment from Spaln_aa2Genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGC-TCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctctggtgccactctcttctacaatgaaattttgcttatgtatttgcagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCcTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtgaggaacccgcatagctcaggatcctgtttctggatcctgaagctgaa Alignment from Spaln_nt2Genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGG-CTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctctggtgccactctcttctacaatgaaattttgcttatgtatttgcagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtgaggaacccgcatagctcaggatcctgtttctggatcctgaagctgaa Alignment from Pairagon TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGG-CTCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctctggtgccactctcttctacaatgaaattttgcttatgtatttgcagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtgaggaacccgcatagctcaggatcctgtttctggatcctgaagctgaa Alignment from Exonerate_protein2genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGC-TCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctctggtgccactctcttctacaatgaaattttgcttatgtatttgcagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtgaggaacccgcatagctcaggatcctgtttctggatcctgaagctgaa Alignment from Exonerate_coding2genome TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGC-TCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctctggtgccactctcttctacaatgaaattttgcttatgtatttgcagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtgaggaacccgcatagctcaggatcctgtttctggatcctgaagctgaa Alignment from GeneWise TACCCTCCTCCACTGATCCCCCCACGTGGGGAGGTGAATGCAGCTGACGCTTTCGACATTGGC-TCCTTTGATGAGGAGGACACAAAAGGAATCAAG tctctggtgccactctcttctacaatgaaattttgcttatgtatttgcagTACCCTCCTCCACTGATCCCCCAACGTGGGGAGGTGAATGCAGCTGACGCTTTTGACATTGGCCTCCTTTGATGAGGAGGACACAAAAGGAATCAAGgtgaggaacccgcatagctcaggatcctgtttctggatcctgaagctgaa #### Adrbk1_ID480_15 --> 1 - 0 Original Alignment gGCTCAGGAGGTAAAAGAAAGTCCTTTC-TTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG atctgaatgccatgtaataagcaacaggcctgactctgtttcccccgcaggGCTCAGGAGGTAAAAGAAAGTCCTTTCCTTTCATTCTCTGGACTGGCAGATGGCATTCTTACAGAAGgtatggatataatccatagggaatgtgcgttctctggtgccactctcttc Alignment from CESAR gGCTCAGGAGGTAAAAGAAAGTCCTTTC-TTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG atctgaatgccatgtaataagcaacaggcctgactctgtttcccccgcaggGCTCAGGAGGTAAAAGAAAGTCCTTTCCTTTCATTCTCTGGACTGGCAGATGGCATTCTTACAGAAGgtatggatataatccatagggaatgtgcgttctctggtgccactctcttc Alignment from Spaln_aa2Genome -GCTCAGGAGGTAAAAGAAAGTCCTTTC-TTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG atctgaatgccatgtaataagcaacaggcctgactctgtttcccccgcagGGCTCAGGAGGTAAAAGAAAGTCCTTTCcTTTCATTCTCTGGACTGGCAGATGGCATTCTTACAGAAGgtatggatataatccatagggaatgtgcgttctctggtgccactctcttc Alignment from Spaln_nt2Genome GGCTCAGGAGGTAAAAGAAAGTCCTTT-CTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG atctgaatgccatgtaataagcaacaggcctgactctgtttcccccgcagGGCTCAGGAGGTAAAAGAAAGTCCTTTCCTTTCATTCTCTGGACTGGCAGATGGCATTCTTACAGAAGgtatggatataatccatagggaatgtgcgttctctggtgccactctcttc Alignment from Pairagon GGCTCAGGAGGTAAAAGAAAGTCCTTT-CTTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG atctgaatgccatgtaataagcaacaggcctgactctgtttcccccgcagGGCTCAGGAGGTAAAAGAAAGTCCTTTCCTTTCATTCTCTGGACTGGCAGATGGCATTCTTACAGAAGgtatggatataatccatagggaatgtgcgttctctggtgccactctcttc Alignment from Exonerate_protein2genome GGCTCAGGAGGTAAAAGAAAGTCCTTTC-TTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG atctgaatgccatgtaataagcaacaggcctgactctgtttcccccgcagGGCTCAGGAGGTAAAAGAAAGTCCTTTCCTTTCATTCTCTGGACTGGCAGATGGCATTCTTACAGAAGgtatggatataatccatagggaatgtgcgttctctggtgccactctcttc Alignment from Exonerate_coding2genome GGCTCAGGAGGTAAAAGAAAGTCCTTTC-TTTCGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG atctgaatgccatgtaataagcaacaggcctgactctgtttcccccgcagGGCTCAGGAGGTAAAAGAAAGTCCTTTCCTTTCATTCTCTGGACTGGCAGATGGCATTCTTACAGAAGgtatggatataatccatagggaatgtgcgttctctggtgccactctcttc Alignment from GeneWise -GCTCAGGAGGTAAAAGAAAGTCCTTTCTTT-CGTTCCCTGGACTGGCAGATGGTCTTCTTACAGAAG atctgaatgccatgtaataagcaacaggcctgactctgtttcccccgcagGGCTCAGGAGGTAAAAGAAAGTCCTTTCCTTTCATTCTCTGGACTGGCAGATGGCATTCTTACAGAAGgtatggatataatccatagggaatgtgcgttctctggtgccactctcttc #### Adrbk1_ID481_14 --> 0 - 2 Original Alignment GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTA-GGCTGTCTGGGC---CGTgg gttaggttgtcttcctagttactgttgaatatatttcttcttttgaacagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAACTCCGCTCCCTGTTGGGGGGTTTGCTTCAGAGGGACATCAACCGGAGGTCACGGCTGTCTGGGCCGTCAGgggtaagttcgtgaccttccagctatgacttttatttctcttaacccaggat Alignment from CESAR GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTA-GGCTGTCTGGGCCGT---gg gttaggttgtcttcctagttactgttgaatatatttcttcttttgaacagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAACTCCGCTCCCTGTTGGGGGGTTTGCTTCAGAGGGACATCAACCGGAGGTCACGGCTGTCTGGGCCGTCAGgggtaagttcgtgaccttccagctatgacttttatttctcttaacccaggat Alignment from Spaln_aa2Genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGTGG gttaggttgtcttcctagttactgttgaatatatttcttcttttgaacagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAACTCCGCTCCCTGTTGGGGGGTTTGCTTCAGAGGGACATCAACCGGAGG---TCACGGCTGTCTGGGCCgtcaggggtaagttcgtgaccttccagctatgacttttatttctcttaacccaggat Alignment from Spaln_nt2Genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTA-GGCTGTCTGGGCCGT---GG gttaggttgtcttcctagttactgttgaatatatttcttcttttgaacagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAACTCCGCTCCCTGTTGGGGGGTTTGCTTCAGAGGGACATCAACCGGAGGTCACGGCTGTCTGGGCCGTCAGGGgtaagttcgtgaccttccagctatgacttttatttctcttaacccaggat Alignment from Pairagon GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTA-GGCTGTCTGGGCCGT---GG gttaggttgtcttcctagttactgttgaatatatttcttcttttgaacagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAACTCCGCTCCCTGTTGGGGGGTTTGCTTCAGAGGGACATCAACCGGAGGTCACGGCTGTCTGGGCCGTCAGGGgtaagttcgtgaccttccagctatgacttttatttctcttaacccaggat Alignment from Exonerate_protein2genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTA-GGCTGTCTGGGCCGT---GG gttaggttgtcttcctagttactgttgaatatatttcttcttttgaacagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAACTCCGCTCCCTGTTGGGGGGTTTGCTTCAGAGGGACATCAACCGGAGGTCACGGCTGTCTGGGCCGTCAGGGgtaagttcgtgaccttccagctatgacttttatttctcttaacccaggat Alignment from Exonerate_coding2genome GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTA-GGCTGTCTGGGCCGT---GG gttaggttgtcttcctagttactgttgaatatatttcttcttttgaacagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAACTCCGCTCCCTGTTGGGGGGTTTGCTTCAGAGGGACATCAACCGGAGGTCACGGCTGTCTGGGCCGTCAGGGgtaagttcgtgaccttccagctatgacttttatttctcttaacccaggat Alignment from GeneWise GCTGTAGAGCTGCCTGACTCCTTCTCCCCTGAACTCCGATCCCTGCTGGAAGGTTTGTTGCAGAGGGACGTCAATCGGAGACTAGGCTGTCTGGGCCGTGG gttaggttgtcttcctagttactgttgaatatatttcttcttttgaacagGCTGTAGAACTGCTTGATTCCTTCTCCCCTGAACTCCGCTCCCTGTTGGGGGGTTTGCTTCAGAGGGACATCAACCGGAGG------------TCACGGCTgtctgggccgtcaggggtaagttcgtgaccttccagctatgacttttatttctcttaacccaggat #### Adrbk1_ID482_13 --> 1 - 0 Original Alignment aCACAGCCCCTTCCGG-CAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG ctatcagtctagtcctgttcgcccatccaccatgtaactcggtgtgttagcCACAGTCACTTCCGGCCAGCACAAGACAAAAGATACACATGACATTGACCGCATGACACTTACTATGgtaagactaataggagcattgagaactatgtcacacataatcgtaaatcc Alignment from CESAR aCACAGCCCCTTCCGG-CAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG ctatcagtctagtcctgttcgcccatccaccatgtaactcggtgtgttagcCACAGTCACTTCCGGCCAGCACAAGACAAAAGATACACATGACATTGACCGCATGACACTTACTATGgtaagactaataggagcattgagaactatgtcacacataatcgtaaatcc Alignment from Spaln_aa2Genome ACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG ctatcagtctagtcctgttcgcccatccaccatgtaactcggtgtgttagccacagTCACTTCC---GGCCAGCACAAGACAAAAGATACACATGACATTGACCGCATGACACTTACTATGgtaagactaataggagcattgagaactatgtcacacataatcgtaaatcc Alignment from Spaln_nt2Genome ACACAGCCCCTTCCGGC-AGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG ctatcagtctagtcctgttcgcccatccaccatgtaactcggtgtgttagCCACAGTCACTTCCGGCCAGCACAAGACAAAAGATACACATGACATTGACCGCATGACACTTACTATGgtaagactaataggagcattgagaactatgtcacacataatcgtaaatcc Alignment from Pairagon ACACAGCCCCTTCCGG-CAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG ctatcagtctagtcctgttcgcccatccaccatgtaactcggtgtgttagCCACAGTCACTTCCGGCCAGCACAAGACAAAAGATACACATGACATTGACCGCATGACACTTACTATGgtaagactaataggagcattgagaactatgtcacacataatcgtaaatcc Alignment from Exonerate_protein2genome ACACAGCCCCTTCCGG-CAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG ctatcagtctagtcctgttcgcccatccaccatgtaactcggtgtgttagCCACAGTCACTTCCGGCCAGCACAAGACAAAAGATACACATGACATTGACCGCATGACACTTACTATGgtaagactaataggagcattgagaactatgtcacacataatcgtaaatcc Alignment from Exonerate_coding2genome ACACAGCCCCTTCCGG-CAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG ctatcagtctagtcctgttcgcccatccaccatgtaactcggtgtgttagCCACAGTCACTTCCGGCCAGCACAAGACAAAAGATACACATGACATTGACCGCATGACACTTACTATGgtaagactaataggagcattgagaactatgtcacacataatcgtaaatcc Alignment from GeneWise --CACAGCCCCTTCCGGCAGCACAAGACCAAAGACAAGCATGAGATTGACCGCATGACGTTGACGATG ctatcagtctagtcctgttcgcccatccaccatgtaactcggtgtgttagCCACAGTCACTTCCGGCCAGCACAAGACAAAAGATACACATGACATTGACCGCATGACACTTACTATGgtaagactaataggagcattgagaactatgtcacacataatcgtaaatcc #### Adrbk1_ID485_10 --> 2 - 0 Original Alignment CATGAACg gtGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTAC-AGGGACCTGAAG TATGAATggtaaggtagtttagagaatggtatcttcttcacattttacaggtGGGGAACTGCATTATCACCTATCACAGCATGGAGTCTTCTCAGAAGCTGATATGCGTCTCTATGCTGCTGATATCATC------------CACATGCACAATCACTTTGTAGTTTTCCAGGGATCTAAAGgtattttgtagttgatagagcacactttgtctaccccccccctattcctc Alignment from CESAR CATGAACg gtGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTAC-AGGGACCTGAAG TATGAATggtcagttagtttagagaatggtatcttcttcacattttacaggtGGGGAACTGCATTATCACCTATCACAGCATGGAGTCTTCTCAGAAGCTGATATGCGTCTCTATGCTGCTGATATCATC------------CACATGCACAATCACTTTGTAGTTTTCCAGGGATCTAAAGgtattttgtagttgatagagcacactttgtctaccccccccctattcctc Alignment from Spaln_aa2Genome CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAG- TATGAATGgtaaggtagtttagagaatggtatcttcttcacattttacagGTGGGGAACTGCATTATCACCTATCACAGCATGGAGTCTTCTCAGAAGCTGATATGCGTCTCTATGCTGCTGATATCATC------------CACATGCACAATCACTTTGTAGTTTTCCAGGGATCTAAAGgtattttgtagttgatagagcacactttgtctaccccccccctattcctc Alignment from Spaln_nt2Genome CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTAC-AGGGACCTGAAG TATGAATGgtaaggtagtttagagaatggtatcttcttcacattttacagGTGGGGAACTGCATTATCACCTATCACAGCATGGAGTCTTCTCAGAAGCTGATATGCGTCTCTATGCTGCTGATATCATC------------CACATGCACAATCACTTTGTAGTTTTCCAGGGATCTAAAGgtattttgtagttgatagagcacactttgtctaccccccccctattcctc Alignment from Pairagon CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAG-TCTACAGGGACCTGAAG TATGAATGgtaaggtagtttagagaatggtatcttcttcacattttacagGTGGGGAACTGCATTATCACCTATCACAGCATGGAGTCTTCTCAGAAGCTGATATGCGTCTCTATGCTGCTGATATCATC------------CACATGCACAATCACTTTGTAGTTTTCCAGGGATCTAAAGgtattttgtagttgatagagcacactttgtctaccccccccctattcctc Alignment from Exonerate_protein2genome CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTAC-AGGGACCTGAAG TATGAATGgtaaggtagtttagagaatggtatcttcttcacattttacagGTGGGGAACTGCATTATCACCTATCACAGCATGGAGTCTTCTCAGAAGCTGATATGCGTCTCTATGCTGCTGATATCATC------------CACATGCACAATCACTTTGTAGTTTTCCAGGGATCTAAAGgtattttgtagttgatagagcacactttgtctaccccccccctattcctc Alignment from Exonerate_coding2genome CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTAC-AGGGACCTGAAG TATGAATGgtaaggtagtttagagaatggtatcttcttcacattttacagGTGGGGAACTGCATTATCACCTATCACAGCATGGAGTCTTCTCAGAAGCTGATATGCGTCTCTATGCTGCTGATATCATC------------CACATGCACAATCACTTTGTAGTTTTCCAGGGATCTAAAGgtattttgtagttgatagagcacactttgtctaccccccccctattcctc Alignment from GeneWise CATGAACG GTGGGGACCTGCACTACCACCTGTCTCAGCATGGAGTCTTCTCTGAAGCCGACATGCGCTTCTACGCCGCTGAGATCATCCTGGGCCTTGAACACATGCACAATCGCTTTGTAGTCTACAGGGACCTGAAGC TATGAATGgtaaggtagtttagagaatggtatcttcttcacattttacagGTGGGGAACTGCATTATCACCTATCACAGCATGGAGTCTTCTCAGAAGCTGATATGCGTCTCTATGCTGCTGATATCATC------------CACATGCACAATCACTTTGTAGTTTTCCAGGGATCTAAAGgtattttgtagttgatagagcacactttgtctaccccccccctattcctc #### Adrbk1_ID490_5 --> 0 - 2 Original Alignment CCATACATTGAGGAG-ATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGag agaccgaggcttgccagattgattcaccagctattattttcttttggcagCCTTACATTGAGGACCATTTGTCAGAAGCTCCGAAGGGATTTATTCCAAAAGTTTATAGAGaggtacccttgaaggacttctctgcccctgcagccaggggtgttggaaaact Alignment from CESAR CCATACATTGAGGAG-ATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGag agaccgaggcttgccagattgattcaccagctattattttcttttggcagCCTTACATTGAGGACCATTTGTCAGAAGCTCCGAAGGGATTTATTCCAAAAGTTTATAGAGaggtacccttgaaggacttctctgcccctgcagccaggggtgttggaaaact Alignment from Spaln_aa2Genome CCATACATTGAGGAG-ATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG agaccgaggcttgccagattgattcaccagctattattttcttttggcagCCTTACATTGAGGACcATTTGTCAGAAGCTCCGAAGGGATTTATTCCAAAAGTTTATAGAGAGgtacccttgaaggacttctctgcccctgcagccaggggtgttggaaaact Alignment from Spaln_nt2Genome CCATACATTGAGGAG-ATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG agaccgaggcttgccagattgattcaccagctattattttcttttggcagCCTTACATTGAGGACCATTTGTCAGAAGCTCCGAAGGGATTTATTCCAAAAGTTTATAGAGAGgtacccttgaaggacttctctgcccctgcagccaggggtgttggaaaact Alignment from Pairagon CCATACATTGAGGA-GATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG agaccgaggcttgccagattgattcaccagctattattttcttttggcagCCTTACATTGAGGACCATTTGTCAGAAGCTCCGAAGGGATTTATTCCAAAAGTTTATAGAGAGgtacccttgaaggacttctctgcccctgcagccaggggtgttggaaaact Alignment from Exonerate_protein2genome CCATACATTGAGGAG-ATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG agaccgaggcttgccagattgattcaccagctattattttcttttggcagCCTTACATTGAGGACCATTTGTCAGAAGCTCCGAAGGGATTTATTCCAAAAGTTTATAGAGAGgtacccttgaaggacttctctgcccctgcagccaggggtgttggaaaact Alignment from Exonerate_coding2genome agaccgaggcttgccagattgattcaccagctattattttcttttggcagccttacattgaggaccatttgtcagaagctccgaagggatttattccaaaagtttatagagaggtacccttgaaggacttctctgcccctgcagccaggggtgttggaaaact Alignment from GeneWise GGAGATTTGTCAGAACCTCCGAGGGGACGTGTTCCAGAAGTTCATAGAGAG agaccgaggcttgccagattgattcaccagctattattttcttttggcagccttacattgagGACCATTTGTCAGAAGCTCCGAAGGGATTTATTCCAAAAGTTTATAGAGAGgtacccttgaaggacttctctgcccctgcagccaggggtgttggaaaact #### Adrbk1_ID492_3 --> 0 - 0 Original Alignment ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATC-TTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT acccttcacagccagcttcatactgtggttccaaccctgtctcctattagATTAAGAAATATGCGAAGCTGGAGACAGAGGAGGAATGTGTGGTCCGCAGCCGAGAGATCCTTTGAGTCCTACATTATGAAGGAGCTCCTGGCATGCTCACATgtatgtgctgaatctacccattactcctagatatgtgggcttaaagagac Alignment from CESAR ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATC-TTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT acccttcacagccagcttcatactgtggttccaaccctgtctcctattagATTAAGAAATATGCGAAGCTGGAGACAGAGGAGGAATGTGTGGTCCGCAGCCGAGAGATCCTTTGAGTCCTACATTATGAAGGAGCTCCTGGCATGCTCACATgtatgtgctgaatctacccattactcctagatatgtgggcttaaagagac Alignment from Spaln_aa2Genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATC-TTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT acccttcacagccagcttcatactgtggttccaaccctgtctcctattagATTAAGAAATATGCGAAGCTGGAGACAGAGGAGGAATGTGTGGTCCGCAGCCGAGAGATCcTTTGAGTCCTACATTATGAAGGAGCTCCTGGCATGCTCACATgtatgtgctgaatctacccattactcctagatatgtgggcttaaagagac Alignment from Spaln_nt2Genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGAT-CTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT acccttcacagccagcttcatactgtggttccaaccctgtctcctattagATTAAGAAATATGCGAAGCTGGAGACAGAGGAGGAATGTGTGGTCCGCAGCCGAGAGATCCTTTGAGTCCTACATTATGAAGGAGCTCCTGGCATGCTCACATgtatgtgctgaatctacccattactcctagatatgtgggcttaaagagac Alignment from Pairagon ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGAT-CTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT acccttcacagccagcttcatactgtggttccaaccctgtctcctattagATTAAGAAATATGCGAAGCTGGAGACAGAGGAGGAATGTGTGGTCCGCAGCCGAGAGATCCTTTGAGTCCTACATTATGAAGGAGCTCCTGGCATGCTCACATgtatgtgctgaatctacccattactcctagatatgtgggcttaaagagac Alignment from Exonerate_protein2genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATC-TTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT acccttcacagccagcttcatactgtggttccaaccctgtctcctattagATTAAGAAATATGCGAAGCTGGAGACAGAGGAGGAATGTGTGGTCCGCAGCCGAGAGATCCTTTGAGTCCTACATTATGAAGGAGCTCCTGGCATGCTCACATgtatgtgctgaatctacccattactcctagatatgtgggcttaaagagac Alignment from Exonerate_coding2genome ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAGATC-TTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT acccttcacagccagcttcatactgtggttccaaccctgtctcctattagATTAAGAAATATGCGAAGCTGGAGACAGAGGAGGAATGTGTGGTCCGCAGCCGAGAGATCCTTTGAGTCCTACATTATGAAGGAGCTCCTGGCATGCTCACATgtatgtgctgaatctacccattactcctagatatgtgggcttaaagagac Alignment from GeneWise ATCAAGAAATATGAGAAGCTGGAGACAGAGGAGGAACGTGTGGTCCGCAGCCGAGAG-ATCTTTGACTCCTATATTATGAAAGAACTGCTGGCCTGCTCACAT acccttcacagccagcttcatactgtggttccaaccctgtctcctattagATTAAGAAATATGCGAAGCTGGAGACAGAGGAGGAATGTGTGGTCCGCAGCCGAGAGATCCTTTGAGTCCTACATTATGAAGGAGCTCCTGGCATGCTCACATgtatgtgctgaatctacccattactcctagatatgtgggcttaaagagac #### Afap1l2_ID12247_16 --> 0 - 1 Original Alignment AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATC-GAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAg cctgctctctaagcctgaagccaaacgtttttatttttttcactctaaagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTCGAACCAACACCACGGAGCACTATGGTTAAGTTGCAGGCAGATCAGCAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACAATGGCTTCCACCCCCATTTCTGCCAGCTCGCCTGTGAAAGAGAAGTTAAGAGTTACTGGTGCAggtaagtggactaagcttgtttgctctaagcttgtttgcttgtattgctga Alignment from CESAR AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATC-GAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAg cctgctctctaagcctgaagccaaacgtttttatttttttcactctaaagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTCGAACCAACACCACGGAGCACTATGGTTAAGTTGCAGGCAGATCAGCAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACAATGGCTTCCACCCCCATTTCTGCCAGCTCGCCTGTGAAAGAGAAGTTAAGAGTTACTGGTGCAggtaagtggactaagcttgtttgctctaagcttgtttgcttgtattgctga Alignment from Spaln_aa2Genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATC-GAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG cctgctctctaagcctgaagccaaacgtttttatttttttcactctaaagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTcGAACCAACACCACGGAGCACTATGGTTAAGTTGCAGGCAGATCAGCAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACAATGGCTTCCACCCCCATTTCTGCCAGCTCGCCTGTGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtaagtggactaagcttgtttgctctaagcttgtttgcttgtattgctga Alignment from Spaln_nt2Genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTAT-CGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG cctgctctctaagcctgaagccaaacgtttttatttttttcactctaaagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTCGAACCAACACCACGGAGCACTATGGTTAAGTTGCAGGCAGATCAGCAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACAATGGCTTCCACCCCCATTTCTGCCAGCTCGCCTGTGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtaagtggactaagcttgtttgctctaagcttgtttgcttgtattgctga Alignment from Pairagon ------------------------------------------------AGAGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTA-TCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG CCTGCTCTCTAAGCCTGAAGCCAAACGTTTTTATTTTTTTCACTCTAAAGAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTCGAACCAACACCACGGAGCACTATGGTTAAGTTGCAGGCAGATCAGCAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACAATGGCTTCCACCCCCATTTCTGCCAGCTCGCCTGTGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtaagtggactaagcttgtttgctctaagcttgtttgcttgtattgctga Alignment from Exonerate_protein2genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATC-GAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG cctgctctctaagcctgaagccaaacgtttttatttttttcactctaaagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTCGAACCAACACCACGGAGCACTATGGTTAAGTTGCAGGCAGATCAGCAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACAATGGCTTCCACCCCCATTTCTGCCAGCTCGCCTGTGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtaagtggactaagcttgtttgctctaagcttgtttgcttgtattgctga Alignment from Exonerate_coding2genome AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCTATC-GAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG cctgctctctaagcctgaagccaaacgtttttatttttttcactctaaagAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTCGAACCAACACCACGGAGCACTATGGTTAAGTTGCAGGCAGATCAGCAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACAATGGCTTCCACCCCCATTTCTGCCAGCTCGCCTGTGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtaagtggactaagcttgtttgctctaagcttgtttgcttgtattgctga Alignment from GeneWise --------------------------------------------------AGGCAACCAGAGGTTCAAGAGTCTTCAGAGCCT-ATCGAGCCCACCCCGCGAATCACCATGGTTAAGCTACAGGCCGAGCAGCAGAGAATCTCCTTCCCAGCCAACTGCCCAGACACCATGGCTTCTGCCCCCATCGCTGCCAGCCCACCTGTGAAGGAGAAGCTGAGAGTGACCAGTGCAG CCTGCTCTCTAAGCCTGAAGCCAAACGTTTTTATTTTTTTCACTCTAAAGAGGCAACCAGAAGTTCAAGAGTCCTCAGAGCCTATTCGAACCAACACCACGGAGCACTATGGTTAAGTTGCAGGCAGATCAGCAGAGAATCTCCTTCCCTGCTAACTGCCCAGACACAATGGCTTCCACCCCCATTTCTGCCAGCTCGCCTGTGAAAGAGAAGTTAAGAGTTACTGGTGCAGgtaagtggactaagcttgtttgctctaagcttgtttgcttgtattgctga #### Aip_ID331_4 --> 0 - 0 Original Alignment GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAA-GAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gttggagcccaaaggtggggactggtttcagcttggttctctgttcccagGTAGAGAGTCCTGGTACCTATCAACAGGACCCTTGGGCAATGACAGATGAGGAGAAAGCAAAGGAAGTACCTGTCATCCACCAGCGAGGGCAACCGGTTGTATCGTGAAAGCCAGGTGAGGGAGGCTGCTGCCAAGTACTATGATGCCATTGCTTCCCTCAAGAATCTGCAAATGAAAgtaaggctcatagtcacgatagggggaacatatgaagtacacatggctga Alignment from CESAR GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAA-GAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gttggagcccaaaggtggggactggtttcagcttggttctctgttcccagGTAGAGAGTCCTGGTACCTATCAACAGGACCCTTGGGCAATGACAGATGAGGAGAAAGCAAAGGAAGTACCTGTCATCCACCAGCGAGGGCAACCGGTTGTATCGTGAAAGCCAGGTGAGGGAGGCTGCTGCCAAGTACTATGATGCCATTGCTTCCCTCAAGAATCTGCAAATGAAAgtaaggctcatagtcacgatagggggaacatatgaagtacacatggctga Alignment from Spaln_aa2Genome GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGC-AACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gttggagcccaaaggtggggactggtttcagcttggttctctgttcccagGTAGAGAGTCCTGGTACCTATCAACAGGACCCTTGGGCAATGACAGATGAGGAGAAAGCAAAGGAAGTACCTGTCATCCACCAGCGAGGGcAACCGGTTGTATCGTGAAAGCCAGGTGAGGGAGGCTGCTGCCAAGTACTATGATGCCATTGCTTCCCTCAAGAATCTGCAAATGAAAgtaaggctcatagtcacgatagggggaacatatgaagtacacatggctga Alignment from Spaln_nt2Genome GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAA-GAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gttggagcccaaaggtggggactggtttcagcttggttctctgttcccagGTAGAGAGTCCTGGTACCTATCAACAGGACCCTTGGGCAATGACAGATGAGGAGAAAGCAAAGGAAGTACCTGTCATCCACCAGCGAGGGCAACCGGTTGTATCGTGAAAGCCAGGTGAGGGAGGCTGCTGCCAAGTACTATGATGCCATTGCTTCCCTCAAGAATCTGCAAATGAAAgtaaggctcatagtcacgatagggggaacatatgaagtacacatggctga Alignment from Pairagon GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAA-GAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gttggagcccaaaggtggggactggtttcagcttggttctctgttcccagGTAGAGAGTCCTGGTACCTATCAACAGGACCCTTGGGCAATGACAGATGAGGAGAAAGCAAAGGAAGTACCTGTCATCCACCAGCGAGGGCAACCGGTTGTATCGTGAAAGCCAGGTGAGGGAGGCTGCTGCCAAGTACTATGATGCCATTGCTTCCCTCAAGAATCTGCAAATGAAAgtaaggctcatagtcacgatagggggaacatatgaagtacacatggctga Alignment from Exonerate_protein2genome GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAA-GAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gttggagcccaaaggtggggactggtttcagcttggttctctgttcccagGTAGAGAGTCCTGGTACCTATCAACAGGACCCTTGGGCAATGACAGATGAGGAGAAAGCAAAGGAAGTACCTGTCATCCACCAGCGAGGGCAACCGGTTGTATCGTGAAAGCCAGGTGAGGGAGGCTGCTGCCAAGTACTATGATGCCATTGCTTCCCTCAAGAATCTGCAAATGAAAgtaaggctcatagtcacgatagggggaacatatgaagtacacatggctga Alignment from Exonerate_coding2genome GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAA-GAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gttggagcccaaaggtggggactggtttcagcttggttctctgttcccagGTAGAGAGTCCTGGTACCTATCAACAGGACCCTTGGGCAATGACAGATGAGGAGAAAGCAAAGGAAGTACCTGTCATCCACCAGCGAGGGCAACCGGTTGTATCGTGAAAGCCAGGTGAGGGAGGCTGCTGCCAAGTACTATGATGCCATTGCTTCCCTCAAGAATCTGCAAATGAAAgtaaggctcatagtcacgatagggggaacatatgaagtacacatggctga Alignment from GeneWise GTAGAGAGTCCTGGCACCTATCAACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAA-GAGGGCAACCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAGAATCTGCAGATGAAG gttggagcccaaaggtggggactggtttcagcttggttctctgttcccagGTAGAGAGTCCTGGTACCTATCAACAGGACCCTTGGGCAATGACAGATGAGGAGAAAGCAAAGGAAGTACCTGTCATCCACCAGCGAGGGCAACCGGTTGTATCGTGAAAGCCAGGTGAGGGAGGCTGCTGCCAAGTACTATGATGCCATTGCTTCCCTCAAGAATCTGCAAATGAAAgtaaggctcatagtcacgatagggggaacatatgaagtacacatggctga #### Aldh3b2_ID237_3 --> 0 - 0 Original Alignment TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTG-GCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG tggtttctggtggtaaactgagcttgcacttaccctcttttcttggctagTCTGGCTTTGAGTCAGACATGAGTGAGATCTTTCTGTGTGAGAATGAGGTGGATTTGCGCCCTGAAGAATTTGCAGACGTGGATGAAGGATGAACCTGTACCCACAAATTTAgtaggacctgtcggtgtactgtaatttcagtgagtggctagccccatatc Alignment from CESAR TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTG-GCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG tggtttctggtggtaaactgagcttgcacttaccctcttttcttggctagTCTGGCTTTGAGTCAGACATGAGTGAGATCTTTCTGTGTGAGAATGAGGTGGATTTGCGCCCTGAAGAATTTGCAGACGTGGATGAAGGATGAACCTGTACCCACAAATTTAgtaggacctgtcggtgtactgtaatttcagtgagtggctagccccatatc Alignment from Spaln_aa2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTG-GCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG tggtttctggtggtaaactgagcttgcacttaccctcttttcttggctagTCTGGCTTTGAGTCAGACATGAGTGAGATCTTTCTGTGTGAGAATGAGGTGGATTTGcGCCCTGAAGAATTTGCAGACGTGGATGAAGGATGAACCTGTACCCACAAATTTAgtaggacctgtcggtgtactgtaatttcagtgagtggctagccccatatc Alignment from Spaln_nt2Genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTG-GCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG tggtttctggtggtaaactgagcttgcacttaccctcttttcttggctagTCTGGCTTTGAGTCAGACATGAGTGAGATCTTTCTGTGTGAGAATGAGGTGGATTTGCGCCCTGAAGAATTTGCAGACGTGGATGAAGGATGAACCTGTACCCACAAATTTAgtaggacctgtcggtgtactgtaatttcagtgagtggctagccccatatc Alignment from Pairagon TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTG-GCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG tggtttctggtggtaaactgagcttgcacttaccctcttttcttggctagTCTGGCTTTGAGTCAGACATGAGTGAGATCTTTCTGTGTGAGAATGAGGTGGATTTGCGCCCTGAAGAATTTGCAGACGTGGATGAAGGATGAACCTGTACCCACAAATTTAgtaggacctgtcggtgtactgtaatttcagtgagtggctagccccatatc Alignment from Exonerate_protein2genome tggtttctggtggtaaactgagcttgcacttaccctcttttcttggctagtctggctttgagtcagacatgagtgagatctttctgtgtgagaatgaggtggatttgcgccctgaagaatttgcagacgtggatgaaggatgaacctgtacccacaaatttagtaggacctgtcggtgtactgtaatttcagtgagtggctagccccatatc Alignment from Exonerate_coding2genome TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTG-GCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG tggtttctggtggtaaactgagcttgcacttaccctcttttcttggctagTCTGGCTTTGAGTCAGACATGAGTGAGATCTTTCTGTGTGAGAATGAGGTGGATTTGCGCCCTGAAGAATTTGCAGACGTGGATGAAGGATGAACCTGTACCCACAAATTTAgtaggacctgtcggtgtactgtaatttcagtgagtggctagccccatatc Alignment from GeneWise TCAGGCTTCGAGTCAGACATGAGTGAGATCATCCTGTGCGAGAATGAGGTGGACCTG-GCCCTCAAGAACCTGCAGACCTGGATGAAGGACGAGCCTGTGTCCACCAACTTG tggtttctggtggtaaactgagcttgcacttaccctcttttcttggctagTCTGGCTTTGAGTCAGACATGAGTGAGATCTTTCTGTGTGAGAATGAGGTGGATTTGCGCCCTGAAGAATTTGCAGACGTGGATGAAGGATGAACCTGTACCCACAAATTTAgtaggacctgtcggtgtactgtaatttcagtgagtggctagccccatatc #### Aldh3b2_ID242_8 --> 2 - 0 Original Alignment ccCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTC-TCCAACAACAACCAG cctctgcgtgtcataaatcaggctagcttaacaggcgatatcttccttagccCCTACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAAGAGGAGATTTTTGGGCCCATCCTTCCTTTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGTGTCCAATAACCAGTGGGAAAAGCCTCTAGCATTGTTTGCCTTTCTCAAACAACAACCAGgttgcttggtgatgagacgataagtagcctgcaaacagtgaatcaaggtg Alignment from CESAR ccCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCC-TTCTCCAACAACAACCAG cctctgcgtgtcataaatcaggctagcttaacaggcgatatcttccttagccCCTACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAAGAGGAGATTTTTGGGCCCATCCTTCCTTTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGTGTCCAATAACCAGTGGGAAAAGCCTCTAGCATTGTTTGCCTTTCTCAAACAACAACCAGgttgcttggtgatgagacgataagtagcctgcaaacagtgaatcaaggtg Alignment from Spaln_aa2Genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTC-TCCAACAACAACCAG cctctgcgtgtcataaatcaggctagcttaacaggcgatatcttccttagCCCCTACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAAGAGGAGATTTTTGGGCCCATCCTTCCTTTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGTGTCCAATAACCAGTGGGAAAAGCCTCTAGCATTGTTTGCCTTTcTCAAACAACAACCAGgttgcttggtgatgagacgataagtagcctgcaaacagtgaatcaaggtg Alignment from Spaln_nt2Genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTT-CTCCAACAACAACCAG cctctgcgtgtcataaatcaggctagcttaacaggcgatatcttccttagCCCCTACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAAGAGGAGATTTTTGGGCCCATCCTTCCTTTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGTGTCCAATAACCAGTGGGAAAAGCCTCTAGCATTGTTTGCCTTTCTCAAACAACAACCAGgttgcttggtgatgagacgataagtagcctgcaaacagtgaatcaaggtg Alignment from Pairagon CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCC-TTCTCCAACAACAACCAG cctctgcgtgtcataaatcaggctagcttaacaggcgatatcttccttagCCCCTACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAAGAGGAGATTTTTGGGCCCATCCTTCCTTTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGTGTCCAATAACCAGTGGGAAAAGCCTCTAGCATTGTTTGCCTTTCTCAAACAACAACCAGgttgcttggtgatgagacgataagtagcctgcaaacagtgaatcaaggtg Alignment from Exonerate_protein2genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCC-TTCTCCAACAACAACCAG cctctgcgtgtcataaatcaggctagcttaacaggcgatatcttccttagCCCCTACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAAGAGGAGATTTTTGGGCCCATCCTTCCTTTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGTGTCCAATAACCAGTGGGAAAAGCCTCTAGCATTGTTTGCCTTTCTCAAACAACAACCAGgttgcttggtgatgagacgataagtagcctgcaaacagtgaatcaaggtg Alignment from Exonerate_coding2genome CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCC-TTCTCCAACAACAACCAG cctctgcgtgtcataaatcaggctagcttaacaggcgatatcttccttagCCCCTACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAAGAGGAGATTTTTGGGCCCATCCTTCCTTTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGTGTCCAATAACCAGTGGGAAAAGCCTCTAGCATTGTTTGCCTTTCTCAAACAACAACCAGgttgcttggtgatgagacgataagtagcctgcaaacagtgaatcaaggtg Alignment from GeneWise CCCCCACAGTGCTGGTAGACGTGCAGGAGACAGAGCCCGTGATGCAGGAGGAGATCTTTGGGCCCATCCTGCCCCTGGTGACTGTGAGAAGCCTGGATGAAGCCATTGAGTTCATCAACCGGCGGGAGAAGCCTCTGGCGCTGTATGCCTTC-TCCAACAACAACCAG cctctgcgtgtcataaatcaggctagcttaacaggcgatatcttccttagCCCCTACAGATCTAGTAGATGTCCATGCAACAGAACCCCTTATGCAAGAGGAGATTTTTGGGCCCATCCTTCCTTTGGTGACTGTAAGAAGCCTGGATGAAGCCATTGTGTCCAATAACCAGTGGGAAAAGCCTCTAGCATTGTTTGCCTTTCTCAAACAACAACCAGgttgcttggtgatgagacgataagtagcctgcaaacagtgaatcaaggtg #### Aldh3b2_ID243_9 --> 0 - 1 Original Alignment GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTC-TACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTg cagaactcaccagaatgcctgtatcacccttattactttttccacttcagGTGGTGAATCAGATGCTGGAACGTACAAGCAGTGGGGGTTTTGGAGGCAATGATGGCTTCCTCCTACCTGACACTGCCAGCGTTGCCTTTGGGTGGGGTTggtaagttcttgcctcctattgccattggagagagttctgtgccacctcgc Alignment from CESAR GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTC-TACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTg cagaactcaccagaatgcctgtatcacccttattactttttccacttcagGTGGTGAATCAGATGCTGGAACGTACAAGCAGTGGGGGTTTTGGAGGCAATGATGGCTTCCTCCTACCTGACACTGCCAGCGTTGCCTTTGGGTGGGGTTggtaagttcttgcctcctattgccattggagagagttctgtgccacctcgc Alignment from Spaln_aa2Genome GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTC-TACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTG cagaactcaccagaatgcctgtatcacccttattactttttccacttcagGTGGTGAATCAGATGCTGGAACGTACAAGCAGTGGGGGTTTTGGAGGCAATGATGGCTTCCTCcTACCTGACACTGCCAGCGTTGCCTTTGGGTGGGGTTGgtaagttcttgcctcctattgccattggagagagttctgtgccacctcgc Alignment from Spaln_nt2Genome GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCT-CTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTG cagaactcaccagaatgcctgtatcacccttattactttttccacttcagGTGGTGAATCAGATGCTGGAACGTACAAGCAGTGGGGGTTTTGGAGGCAATGATGGCTTCCTCCTACCTGACACTGCCAGCGTTGCCTTTGGGTGGGGTTGgtaagttcttgcctcctattgccattggagagagttctgtgccacctcgc Alignment from Pairagon GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCT-CTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTG cagaactcaccagaatgcctgtatcacccttattactttttccacttcagGTGGTGAATCAGATGCTGGAACGTACAAGCAGTGGGGGTTTTGGAGGCAATGATGGCTTCCTCCTACCTGACACTGCCAGCGTTGCCTTTGGGTGGGGTTGgtaagttcttgcctcctattgccattggagagagttctgtgccacctcgc Alignment from Exonerate_protein2genome GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTC-TACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTG cagaactcaccagaatgcctgtatcacccttattactttttccacttcagGTGGTGAATCAGATGCTGGAACGTACAAGCAGTGGGGGTTTTGGAGGCAATGATGGCTTCCTCCTACCTGACACTGCCAGCGTTGCCTTTGGGTGGGGTTGgtaagttcttgcctcctattgccattggagagagttctgtgccacctcgc Alignment from Exonerate_coding2genome GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTCCTC-TACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTG cagaactcaccagaatgcctgtatcacccttattactttttccacttcagGTGGTGAATCAGATGCTGGAACGTACAAGCAGTGGGGGTTTTGGAGGCAATGATGGCTTCCTCCTACCTGACACTGCCAGCGTTGCCTTTGGGTGGGGTTGgtaagttcttgcctcctattgccattggagagagttctgtgccacctcgc Alignment from GeneWise GTGGTGAATCAGATGTTGGAACGCACCAGCAGCGGTGGCTTTGGAGGCAACGATGGCTTC-CTCTACCTGACCCTACCAGCTCTGCCTTTGGGGGGAGTTG cagaactcaccagaatgcctgtatcacccttattactttttccacttcagGTGGTGAATCAGATGCTGGAACGTACAAGCAGTGGGGGTTTTGGAGGCAATGATGGCTTCCTCCTACCTGACACTGCCAGCGTTGCCTTTGGGTGGGGTTGgtaagttcttgcctcctattgccattggagagagttctgtgccacctcgc #### Ankrd13d_ID461_12 --> 2 - 1 Original Alignment agATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCG-GTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAg atgcgatattaggcgttactgggtacctcctcctgtgttgtctctttcagaaATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCACGTGTGTGTCCCCAACTCCAGTCTGGCAATTTCTGCTTCAggtgaggctatagccatgtcagatattcccatctggctttctgttaagcct Alignment from CESAR agATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCG-GTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAg atgcgatattaggcgttactgggtacctcctcctgtgttgtctctttcagaaATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCACGTGTGTGTCCCCAACTCCAGTCTGGCAATTTCTGCTTCAggtgaggctatagccatgtcagatattcccatctggctttctgttaagcct Alignment from Spaln_aa2Genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCG-GTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG atgcgatattaggcgttactgggtacctcctcctgtgttgtctctttcagAAATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCAcGTGTGTGTCCCCAACTCCAGTCTGGCAATTTCTGCTTCAGgtgaggctatagccatgtcagatattcccatctggctttctgttaagcct Alignment from Spaln_nt2Genome AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCG-GTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG atgcgatattaggcgttactgggtacctcctcctgtgttgtctctttcagAAATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCACGTGTGTGTCCCCAACTCCAGTCTGGCAATTTCTGCTTCAGgtgaggctatagccatgtcagatattcccatctggctttctgttaagcct Alignment from Pairagon AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCG-GTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG atgcgatattaggcgttactgggtacctcctcctgtgttgtctctttcagAAATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCACGTGTGTGTCCCCAACTCCAGTCTGGCAATTTCTGCTTCAGgtgaggctatagccatgtcagatattcccatctggctttctgttaagcct Alignment from Exonerate_protein2genome ATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCG-GTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG atgcgatattaggcgttactgggtacctcctcctgtgttgtctctttcagaaATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCACGTGTGTGTCCCCAACTCCAGTCTGGCAATTTCTGCTTCAGgtgaggctatagccatgtcagatattcccatctggctttctgttaagcct Alignment from Exonerate_coding2genome ATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGCTCG-GTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG atgcgatattaggcgttactgggtacctcctcctgtgttgtctctttcagaaATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCACGTGTGTGTCCCCAACTCCAGTCTGGCAATTTCTGCTTCAGgtgaggctatagccatgtcagatattcccatctggctttctgttaagcct Alignment from GeneWise AGATTCCCCTCTTCCATGTGCTCAATGCCCGCATCACCTTCAGTAACCTTTGCGGCTGTGATGAGCCTGTGAGC-TCGGTGTGCGTCCCCAACTCCAGTTCTGCCATTTCTGCTTCAG atgcgatattaggcgttactgggtacctcctcctgtgttgtctctttcagAAATTCCCCTCTTTCATGTGCACAATGCCCGCACCACCTTTAGTAACCTTTGTGGCTGTGATGAACCTGTGAGCTCACGTGTGTGTCCCCAACTCCAGTCTGGCAATTTCTGCTTCAGgtgaggctatagccatgtcagatattcccatctggctttctgttaagcct #### Ankrd13d_ID464_9 --> 2 - 0 Original Alignment ggGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCAC-TCCTCCCACACTTTG actggcttacttatacataaatgggtctccttttatttctccattttcaggaGGAAAGACTCCATTCCAATCCTTCTTGGGTATGGCCCAGCAACATCTCTTCACACACTTTGgtaattttgtttaaggtatgggttggtaaggctgggtaagtggggtttcc Alignment from CESAR ggGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCAC-TCCTCCCACACTTTG actggcttacttatacataaatgggtctccttttatttctccattttcaggaGGAAAGACTCCATTCCAATCCTTCTTGGGTATGGCCCAGCAACATCTCTTCACACACTTTGgtaattttgtttaaggtatgggttggtaaggctgggtaagtggggtttcc Alignment from Spaln_aa2Genome GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCAC-TCCTCCCACACTTTG actggcttacttatacataaatgggtctccttttatttctccattttcagGAGGAAAGACTCCATTCCAATCCTTCTTGGGTATGGCCCAGCAACATcTCTTCACACACTTTGgtaattttgtttaaggtatgggttggtaaggctgggtaagtggggtttcc Alignment from Spaln_nt2Genome GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCA-CTCCTCCCACACTTTG actggcttacttatacataaatgggtctccttttatttctccattttcagGAGGAAAGACTCCATTCCAATCCTTCTTGGGTATGGCCCAGCAACATCTCTTCACACACTTTGgtaattttgtttaaggtatgggttggtaaggctgggtaagtggggtttcc Alignment from Pairagon GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCA-CTCCTCCCACACTTTG actggcttacttatacataaatgggtctccttttatttctccattttcagGAGGAAAGACTCCATTCCAATCCTTCTTGGGTATGGCCCAGCAACATCTCTTCACACACTTTGgtaattttgtttaaggtatgggttggtaaggctgggtaagtggggtttcc Alignment from Exonerate_protein2genome GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCAC-TCCTCCCACACTTTG actggcttacttatacataaatgggtctccttttatttctccattttcagGAGGAAAGACTCCATTCCAATCCTTCTTGGGTATGGCCCAGCAACATCTCTTCACACACTTTGgtaattttgtttaaggtatgggttggtaaggctgggtaagtggggtttcc Alignment from Exonerate_coding2genome GGGGGAAGACTCCATTCCAGTCCTTCCTGGGCATGGCCCAGCAGCAC-TCCTCCCACACTTTG actggcttacttatacataaatgggtctccttttatttctccattttcagGAGGAAAGACTCCATTCCAATCCTTCTTGGGTATGGCCCAGCAACATCTCTTCACACACTTTGgtaattttgtttaaggtatgggttggtaaggctgggtaagtggggtttcc Alignment from GeneWise actggcttacttatacataaatgggtctccttttatttctccattttcaggaggaaagactccattccaatccttcttgggtatggcccagcaacatctcttcacacactttggtaattttgtttaaggtatgggttggtaaggctgggtaagtggggtttcc #### Ankrd1_ID7096_7 --> 0 - 0 Original Alignment CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGC-GAGGCTGATCTCAATGCCAAG---GACAGA gtatgtacgatgattggcctccacccatatagccttccatttctttgcagCTCCTCAGCACAACATTGCATGTGGCAGTCAGGACTGACCATTATGAGTGCACTGAGCACCTCTTCACTAGCCAAAACTGATCTCAATGCCAGGGACAACAGAgtgggcatgaatgtaacctgccttggaggaagcctacagattctgacgag Alignment from CESAR CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAG-GCTGATCTCAATGCCAAGGAC---AGA gtatgtacgatgattggcctccacccatatagccttccatttctttgcagCTCCTCAGCACAACATTGCATGTGGCAGTCAGGACTGACCATTATGAGTGCACTGAGCACCTCTTCACTAGCCAAAACTGATCTCAATGCCAGGGACAACAGAgtgggcatgaatgtaacctgccttggaggaagcctacagattctgacgag Alignment from Spaln_aa2Genome CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAG-GCTGATCTCAATGCCAAGGAC---AGA gtatgtacgatgattggcctccacccatatagccttccatttctttgcagCTCCTCAGCACAACATTGCATGTGGCAGTCAGGACTGACCATTATGAGTGCACTGAGCACCTCTTCACTAGCCAAaACTGATCTCAATGCCAGGGACAACAGAgtgggcatgaatgtaacctgccttggaggaagcctacagattctgacgag Alignment from Spaln_nt2Genome CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCCTGCGAGG-CTGATCTCAATGCCAAGGACA---GA gtatgtacgatgattggcctccacccatatagccttccatttctttgcagCTCCTCAGCACAACATTGCATGTGGCAGTCAGGACTGACCATTATGAGTGCACTGAGCACCTCTTCACTAGCCAAAACTGATCTCAATGCCAGGGACAACAGAgtgggcatgaatgtaacctgccttggaggaagcctacagattctgacgag Alignment from Pairagon CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTC-------------ATCGCCTGCGAGGCTGATCTCAATGCCAAGG---ACAGA gtatgtacgatgattggcctccacccatatagccttccatttctttgcagCTCCTCAGCACAACATTGCATGTGGCAGTCAGGACTGACCATTATGAGTGCACTGAGCACCTCTTCACTAGCCAAAA------------CTGATCTCAATGCCAGGGACAACAGAgtgggcatgaatgtaacctgccttggaggaagcctacagattctgacgag Alignment from Exonerate_protein2genome CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCC-TGCGAGGCTGATCTCAATGCCAAGGAC---AGA gtatgtacgatgattggcctccacccatatagccttccatttctttgcagCTCCTCAGCACAACATTGCATGTGGCAGTCAGGACTGACCATTATGAGTGCACTGAGCACCTCTTCACTAGCCAAAACTGATCTCAATGCCAGGGACAACAGAgtgggcatgaatgtaacctgccttggaggaagcctacagattctgacgag Alignment from Exonerate_coding2genome CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCC-TGCGAGGCTGATCTCAATGCCAAGGAC---AGA gtatgtacgatgattggcctccacccatatagccttccatttctttgcagCTCCTCAGCACAACATTGCATGTGGCAGTCAGGACTGACCATTATGAGTGCACTGAGCACCTCTTCACTAGCCAAAACTGATCTCAATGCCAGGGACAACAGAgtgggcatgaatgtaacctgccttggaggaagcctacagattctgacgag Alignment from GeneWise CTTCTCAGCACAGCGCTGCATGTGGCGGTGAGGACTGGTCATTACGAGTGCGCTGAGCACCTCATCGCC-TGCGAGGCTGATCTCAATGCCAAGGACAGAGAA gtatgtacgatgattggcctccacccatatagccttccatttctttgcagCTCCTCAGCACAACATTGCATGTGGCAGTCAGGACTGACCATTATGAGTGCACTGAGCACCTCTTCACTAGCCAAAACTGATCTCAATGCCAGGGACAACAGAgtgggcatgaatgtaacctgccttggaggaagcctacagattctgacgag #### Anxa1_ID4766_4 --> 0 - 0 Original Alignment CCCTTGGATGAAGTCTTGAGA-AAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaatgatacacacctaagtaacctgctggtttgcacttcagCCCTTAGACGAAGTATTGAGGCAAAGCCCTCACAGGCCATCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCACAATTT---GCAGATGAACTACATGGTGCCATGAAGgtaggttgttcttaacagacttgctcctaaaacaggttcaaggagcttct Alignment from CESAR CCCTTGGATGAAGTCTTGAGA-AAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaatgatacacacctaagtaacctgctggtttgcacttcagCCCTTAGACGAAGTATTGAGGCAAAGCCCTCACAGGCCATCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCACAATTT---GCAGATGAACTACATGGTGCCATGAAGgtaggttgttcttaacagacttgctcctaaaacaggttcaaggagcttct Alignment from Spaln_aa2Genome CCCTTGGATGAAGTCTTGAGA-AAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaatgatacacacctaagtaacctgctggtttgcacttcagCCCTTAGACGAAGTATTGAGGcAAAGCCCTCACAGGCCATCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCACAATTT---GCAGATGAACTACATGGTGCCATGAAGgtaggttgttcttaacagacttgctcctaaaacaggttcaaggagcttct Alignment from Spaln_nt2Genome CCCTTGGATGAAGTCTTGAGA-AAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaatgatacacacctaagtaacctgctggtttgcacttcagCCCTTAGACGAAGTATTGAGGCAAAGCCCTCACAGGCCATCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCACAATTTG---CAGATGAACTACATGGTGCCATGAAGgtaggttgttcttaacagacttgctcctaaaacaggttcaaggagcttct Alignment from Pairagon CCCTTGGATGAAGTCTTGAGA-AAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaatgatacacacctaagtaacctgctggtttgcacttcagCCCTTAGACGAAGTATTGAGGCAAAGCCCTCACAGGCCATCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCACAATT---TGCAGATGAACTACATGGTGCCATGAAGgtaggttgttcttaacagacttgctcctaaaacaggttcaaggagcttct Alignment from Exonerate_protein2genome CCCTTGGATGAAGTCTTGAGA-AAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaatgatacacacctaagtaacctgctggtttgcacttcagCCCTTAGACGAAGTATTGAGGCAAAGCCCTCACAGGCCATCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCACAATTT---GCAGATGAACTACATGGTGCCATGAAGgtaggttgttcttaacagacttgctcctaaaacaggttcaaggagcttct Alignment from Exonerate_coding2genome CCCTTGGATGAAGTCTTGAGA-AAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaatgatacacacctaagtaacctgctggtttgcacttcagCCCTTAGACGAAGTATTGAGGCAAAGCCCTCACAGGCCATCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCACAATTT---GCAGATGAACTACATGGTGCCATGAAGgtaggttgttcttaacagacttgctcctaaaacaggttcaaggagcttct Alignment from GeneWise CCCTTGGATGAAGTCTTGAGA-AAAGCCCTTACAGGCCACCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCTCAGTTTGATGCAGATGAACTCCGTGGTGCCATGAAG aggccaggagaatgatacacacctaagtaacctgctggtttgcacttcagCCCTTAGACGAAGTATTGAGGCAAAGCCCTCACAGGCCATCTGGAGGAGGTTGTTTTGGCTATGCTAAAAACTCCAGCACAATTT---GCAGATGAACTACATGGTGCCATGAAGgtaggttgttcttaacagacttgctcctaaaacaggttcaaggagcttct #### Bbs1_ID718_16 --> 0 - 0 Original Alignment GTTCCCTTGCTG-GTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gaacctaggcttctagctttagcagtggatctcccgcttccatccctcagGTTCCCTTGCTGCGTACCAGGACTCAGTTATCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagtgactacccgtaggatacatggaactgagtggaagcagttggcta Alignment from CESAR GTTCCCTTGCTG-GTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gaacctaggcttctagctttagcagtggatctcccgcttccatccctcagGTTCCCTTGCTGCGTACCAGGACTCAGTTATCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagtgactacccgtaggatacatggaactgagtggaagcagttggcta Alignment from Spaln_aa2Genome GTTCCCTTGCTG-GTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gaacctaggcttctagctttagcagtggatctcccgcttccatccctcagGTTCCCTTGCTGcGTACCAGGACTCAGTTATCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagtgactacccgtaggatacatggaactgagtggaagcagttggcta Alignment from Spaln_nt2Genome GTTCCCTTGCTG-GTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gaacctaggcttctagctttagcagtggatctcccgcttccatccctcagGTTCCCTTGCTGCGTACCAGGACTCAGTTATCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagtgactacccgtaggatacatggaactgagtggaagcagttggcta Alignment from Pairagon GTTCCCTTGCTG-GTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gaacctaggcttctagctttagcagtggatctcccgcttccatccctcagGTTCCCTTGCTGCGTACCAGGACTCAGTTATCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagtgactacccgtaggatacatggaactgagtggaagcagttggcta Alignment from Exonerate_protein2genome GTTCCCTTGCTG-GTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gaacctaggcttctagctttagcagtggatctcccgcttccatccctcagGTTCCCTTGCTGCGTACCAGGACTCAGTTATCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagtgactacccgtaggatacatggaactgagtggaagcagttggcta Alignment from Exonerate_coding2genome GTTCCCTTGCTG-GTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gaacctaggcttctagctttagcagtggatctcccgcttccatccctcagGTTCCCTTGCTGCGTACCAGGACTCAGTTATCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagtgactacccgtaggatacatggaactgagtggaagcagttggcta Alignment from GeneWise GTTCCCTTGCTG-GTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAG gaacctaggcttctagctttagcagtggatctcccgcttccatccctcagGTTCCCTTGCTGCGTACCAGGACTCAGTTATCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATCTCAGACATGATCAAGgtgagtgactacccgtaggatacatggaactgagtggaagcagttggcta #### Bbs1_ID732_2 --> 1 - 1 Original Alignment cAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGAC-CCCATGGCCAACATCCACACCTTCTCCTCCTGCCTGt tattcatcaatctattctgggcataccttctttcctctgcttctctctaggAATGAGGCCAATTCCAAATGGCTGGATGCACACTATGACCCCTATGGCTAACATCCATACTTTCTCCTCCTGTCTGtgtgagtccccatgacttacttgcagcatcaggatacaatgagaatgcttt Alignment from CESAR cAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCC-ATGGCCAACATCCACACCTTCTCCTCCTGCCTGt tattcatcaatctattctgggcataccttctttcctctgcttctctctaggAATGAGGCCAATTCCAAATGGCTGGATGCACACTATGACCCCTATGGCTAACATCCATACTTTCTCCTCCTGTCTGtgtgagtccccatgacttacttgcagcatcaggatacaatgagaatgtttt Alignment from Spaln_aa2Genome CAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCC-ATGGCCAACATCCACACCTTCTCCTCCTGCCTGT tattcatcaatctattctgggcataccttctttcctctgcttctctctagGAATGAGGCCAATTCCAAATGGCTGGATGCACACTATGACCCCtATGGCTAACATCCATACTTTCTCCTCCTGTCTGTgtgagtccccatgacttacttgcagcatcaggatacaatgagaatgcttt Alignment from Spaln_nt2Genome CAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGA-CCCCATGGCCAACATCCACACCTTCTCCTCCTGCCTGT tattcatcaatctattctgggcataccttctttcctctgcttctctctagGAATGAGGCCAATTCCAAATGGCTGGATGCACACTATGACCCCTATGGCTAACATCCATACTTTCTCCTCCTGTCTGTgtgagtccccatgacttacttgcagcatcaggatacaatgagaatgcttt Alignment from Pairagon CAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCC-ATGGCCAACATCCACACCTTCTCCTCCTGCCTGT tattcatcaatctattctgggcataccttctttcctctgcttctctctagGAATGAGGCCAATTCCAAATGGCTGGATGCACACTATGACCCCTATGGCTAACATCCATACTTTCTCCTCCTGTCTGTgtgagtccccatgacttacttgcagcatcaggatacaatgagaatgcttt Alignment from Exonerate_protein2genome CAACGAAGCCAATTCTAAATGGCTGGACGCACACTACGAC-CCCATGGCCAACATCCACACCTTCTCCTCCTGCCTGT tattcatcaatctattctgggcataccttctttcctctgcttctctctagGAATGAGGCCAATTCCAAATGGCTGGATGCACACTATGACCCCTATGGCTAACATCCATACTTTCTCCTCCTGTCTGTgtgagtccccatgacttacttgcagcatcaggatacaatgagaatgcttt Alignment from Exonerate_coding2genome tattcatcaatctattctgggcataccttctttcctctgcttctctctaggaatgaggccaattccaaatggctggatgcacactatgacccctatggctaacatccatactttctcctcctgtctgtgtgagtccccatgacttacttgcagcatcaggatacaatgagaatgcttt Alignment from GeneWise AACGAAGCCAATTCTAAATGGCTGGACGCACACTACGACCCC-ATGGCCAACATCCACACCTTCTCCTCCTGCCTGT tattcatcaatctattctgggcataccttctttcctctgcttctctctaggAATGAGGCCAATTCCAAATGGCTGGATGCACACTATGACCCCTATGGCTAACATCCATACTTTCTCCTCCTGTCTGTgtgagtccccatgacttacttgcagcatcaggatacaatgagaatgcttt #### Best1_ID2631_8 --> 0 - 2 Original Alignment GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCC-ATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCag tggccatagcttaggtgatttgactacaaatctgatcatttttgttctagGTATCCTTGTCATCTGTGGATAGAATGCACCAGAACCTGCCGCCCCATGGAGCGTGACATGTACTGGAATGAATCAGAACCTCATCCC------ACGGCTGCCTCAGCCAGGTCTCGCCGGCATTCATTCATGGGATCTACCTTCAATCCCaggtaagctgggttagggactgggtgaggtaccccacaatgcatccagcaga Alignment from CESAR GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCC-ATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCag tggccatagcttaggtgatttgactacaaatctgatcatttttgttctagGTATCCTTGTCATCTGTGGATAGAATGCACCAGAACCTGCCGCCCCATGGAGCGTGACATGTACTGGAATGAATCAGAACCTCATCCC------ACGGCTGCCTCAGCCAGGTCTCGCCGGCATTCATTCATGGGATCTACCTTCAATCCCaggtaagctgggttagggactgggtgaggtaccccacaatgcatccagcaga Alignment from Spaln_aa2Genome GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCT-CCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG tggccatagcttaggtgatttgactacaaatctgatcatttttgttctagGTATCCTTGTCATCTGTGGATAGAATGCACCAGAACCTGCCGcCCCATGGAGCGTGACATGTACTGGAATGAATCAGAACCTCATCCC------ACGGCTGCCTCAGCCAGGTCTCGCCGGCATTCATTCATGGGATCTACCTTCAATCCCAGgtaagctgggttagggactgggtgaggtaccccacaatgcatccagcaga Alignment from Spaln_nt2Genome GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCT-CCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG tggccatagcttaggtgatttgactacaaatctgatcatttttgttctagGTATCCTTGTCATCTGTGGATAGAATGCACCAGAACCTGCCGCCCCATGGAGCGTGACATGTACTGGAATGAATCAGAACCTCATCC------CACGGCTGCCTCAGCCAGGTCTCGCCGGCATTCATTCATGGGATCTACCTTCAATCCCAGgtaagctgggttagggactgggtgaggtaccccacaatgcatccagcaga Alignment from Pairagon GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCC-TCCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG tggccatagcttaggtgatttgactacaaatctgatcatttttgttctagGTATCCTTGTCATCTGTGGATAGAATGCACCAGAACCTGCCGCCCCATGGAGCGTGACATGTACTGGAATGAATCAGAACCTCATCC------CACGGCTGCCTCAGCCAGGTCTCGCCGGCATTCATTCATGGGATCTACCTTCAATCCCAGgtaagctgggttagggactgggtgaggtaccccacaatgcatccagcaga Alignment from Exonerate_protein2genome GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCT-CCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG tggccatagcttaggtgatttgactacaaatctgatcatttttgttctagGTATCCTTGTCATCTGTGGATAGAATGCACCAGAACCTGCCGCCCCATGGAGCGTGACATGTACTGGAATGAATCAGAACCTCATCCC------ACGGCTGCCTCAGCCAGGTCTCGCCGGCATTCATTCATGGGATCTACCTTCAATCCCAGgtaagctgggttagggactgggtgaggtaccccacaatgcatccagcaga Alignment from Exonerate_coding2genome GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCT-CCCATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG tggccatagcttaggtgatttgactacaaatctgatcatttttgttctagGTATCCTTGTCATCTGTGGATAGAATGCACCAGAACCTGCCGCCCCATGGAGCGTGACATGTACTGGAATGAATCAGAACCTCATCCC------ACGGCTGCCTCAGCCAGGTCTCGCCGGCATTCATTCATGGGATCTACCTTCAATCCCAGgtaagctgggttagggactgggtgaggtaccccacaatgcatccagcaga Alignment from GeneWise GTGTCCCTGTTGTCCGTGGATGGGATGCACCAGAACTTGCCTCCC-ATGGAACGTGACATGTACTGGAACGAGGCAGCGCCTCAGCCGCCCTACACAGCTGCTTCTGCCAGGTCTCGCCGGCATTCCTTCATGGGCTCCACCTTCAACATCAG tggccatagcttaggtgatttgactacaaatctgatcatttttgttctagGTATCCTTGTCATCTGTGGATAGAATGCACCAGAACCTGCCGCCCCATGGAGCGTGACATGTACTGGAATGAATCAGAACCTCATCCC------ACGGCTGCCTCAGCCAGGTCTCGCCGGCATTCATTCATGGGATCTACCTTCAATCCCAGgtaagctgggttagggactgggtgaggtaccccacaatgcatccagcaga #### Best1_ID2637_2 --> 1 - 1 Original Alignment aATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATC-CCTATATCCTTCGTTCTGg ttacagctggaacaatagtctagagtctttttgtattctctccaccccagaATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGTTGGCTCTGTACTGTGATAGCTACATTCAGCTCATCCCCAATAGCATTTGTCCTGggtgagtgcttcttgtagctgatgactaggcctcaccctatctgctgttcc Alignment from CESAR aATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATC-CCTATATCCTTCGTTCTGg ttacagctggaacaatagtctagagtctttttgtattctctccaccccagaATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGTTGGCTCTGTACTGTGATAGCTACATTCAGCTCATCCCCAATAGCATTTGTCCTGggtgagtgcttcttgtagctgatgactaggcctcaccctatctgctgttcc Alignment from Spaln_aa2Genome AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATC-CCTATATCCTTCGTTCTGG ttacagctggaacaatagtctagagtctttttgtattctctccaccccagAATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGTTGGCTCTGTACTGTGATAGCTACATTCAGCTCATCcCCAATAGCATTTGTCCTGGgtgagtgcttcttgtagctgatgactaggcctcaccctatctgctgttcc Alignment from Spaln_nt2Genome AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTA-TATCCTTCGTTCTGG ttacagctggaacaatagtctagagtctttttgtattctctccaccccagAATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGTTGGCTCTGTACTGTGATAGCTACATTCAGCTCATCCCCAATAGCATTTGTCCTGGgtgagtgcttcttgtagctgatgactaggcctcaccctatctgctgttcc Alignment from Pairagon AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCT-ATATCCTTCGTTCTGG ttacagctggaacaatagtctagagtctttttgtattctctccaccccagAATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGTTGGCTCTGTACTGTGATAGCTACATTCAGCTCATCCCCAATAGCATTTGTCCTGGgtgagtgcttcttgtagctgatgactaggcctcaccctatctgctgttcc Alignment from Exonerate_protein2genome AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATC-CCTATATCCTTCGTTCTGG ttacagctggaacaatagtctagagtctttttgtattctctccaccccagAATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGTTGGCTCTGTACTGTGATAGCTACATTCAGCTCATCCCCAATAGCATTTGTCCTGGgtgagtgcttcttgtagctgatgactaggcctcaccctatctgctgttcc Alignment from Exonerate_coding2genome AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATC-CCTATATCCTTCGTTCTGG ttacagctggaacaatagtctagagtctttttgtattctctccaccccagAATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGTTGGCTCTGTACTGTGATAGCTACATTCAGCTCATCCCCAATAGCATTTGTCCTGGgtgagtgcttcttgtagctgatgactaggcctcaccctatctgctgttcc Alignment from GeneWise AATGGTTCTCTCGAGTGATCAGCAGCTGTTGTTTGAGAAGCTGGCTCTGTACTGCGACAGCTACATTCAGCTCATCCCTATATCCTTC- ttacagctggaacaatagtctagagtctttttgtattctctccaccccagAATGATTCTCTCAAGTGACCAGCAGCTTTTGTTCAAGAAGTTGGCTCTGTACTGTGATAGCTACATTCAGCTCATCCCCAATAGCATTTgtcctgggtgagtgcttcttgtagctgatgactaggcctcaccctatctgctgttcc #### Bscl2_ID2422_5 --> 0 - 0 Original Alignment GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTAC-TCTGACTATAGGGAGAATTCG cactaacactcttctcaggcacccagagctcacatcttcatttgacctagGTAATGCTGCAATATTGCTCACAGTTGCTCCAAGTGCTTGACAAACTGTTATTCTCCAGCCTCTTGCTGTTCGGCTTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCGCCACTAGAAATCTATCACTGACTATAGGGACAACTCAgtgaggggcagacaacttgcaacgcacatcctcaatgtagccagaatcat Alignment from CESAR GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTAC-TCTGACTATAGGGAGAATTCG cactaacactcttctcaggcacccagagctcacatcttcatttgacctagGTAATGCTGCAATATTGCTCACAGTTGCTCCAAGTGCTTGACAAACTGTTATTCTCCAGCCTCTTGCTGTTCGGCTTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCGCCACTAGAAATCTATCACTGACTATAGGGACAACTCAgtgaggggcagacaacttgcaacgcacatcctcaatgtagccagaatcat Alignment from Spaln_aa2Genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAAGTA----- -------GAA cactaacactcttctcaggcacccagagctcacatcttcatttgacctagGTAATGCTGCAATATTGCTCACAGTTGCTCCAAGTGCTTGACAAACTGTTATTCTCCAGCCTCTTGCTGTTCGGCTTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGgccgccactagaaatctatcactgactatagggacaactcagtgaggggcagacaacttgcaacgcacatcctcaatgtagCCAGAATCAT Alignment from Spaln_nt2Genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAAG---------------TAGAACTCTA-CTCTGACTATAGGGAGAATTCG cactaacactcttctcaggcacccagagctcacatcttcatttgacctagGTAATGCTGCAATATTGCTCACAGTTGCTCCAAGTGCTTGACAAACTGTTATTCTCCAGCCTCTTGCTGTTCGGCTTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCGCCACTAGAAATCTATCACTGACTATAGGGACAACTCAgtgaggggcagacaacttgcaacgcacatcctcaatgtagccagaatcat Alignment from Pairagon GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAAG---------------TAGAACTCTA-CTCTGACTATAGGGAGAATTCG cactaacactcttctcaggcacccagagctcacatcttcatttgacctagGTAATGCTGCAATATTGCTCACAGTTGCTCCAAGTGCTTGACAAACTGTTATTCTCCAGCCTCTTGCTGTTCGGCTTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCGCCACTAGAAATCTATCACTGACTATAGGGACAACTCAgtgaggggcagacaacttgcaacgcacatcctcaatgtagccagaatcat Alignment from Exonerate_protein2genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCT GGAAGTAGAA cactaacactcttctcaggcacccagagctcacatcttcatttgacctagGTAATGCTGCAATATTGCTCACAGTTGCTCCAAGTGCTTGACAAACTGTTATTCTCCAGCCTCTTGCTGTTCGGCTTTGCTAAACAAAAGCAGCTCTTggaaggcatgaggccgccactagaaatctatcactgactatagggacaactcagtgaggggcagacaacttgcaacgcacatcctcaatgtagCCAGAATCAT Alignment from Exonerate_coding2genome GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCT GGAAGTAGAA cactaacactcttctcaggcacccagagctcacatcttcatttgacctagGTAATGCTGCAATATTGCTCACAGTTGCTCCAAGTGCTTGACAAACTGTTATTCTCCAGCCTCTTGCTGTTCGGCTTTGCTAAACAAAAGCAGCTCTTggaaggcatgaggccgccactagaaatctatcactgactatagggacaactcagtgaggggcagacaacttgcaacgcacatcctcaatgtagCCAGAATCAT Alignment from GeneWise GTGATGCTGCATTACCGCTCGCAGCTGCTCCAGGTGCTCGACACGCTGCTGTTCTCCAGCCTCCTGCTGTTTGGCTTCGCTGAACAGAAGCAGCTCCTGGAA---------------GTAGAACTCTAC-TCTGACTATAGGGAGAATTCG cactaacactcttctcaggcacccagagctcacatcttcatttgacctagGTAATGCTGCAATATTGCTCACAGTTGCTCCAAGTGCTTGACAAACTGTTATTCTCCAGCCTCTTGCTGTTCGGCTTTGCTAAACAAAAGCAGCTCTTGGAAGGCATGAGGCCGCCACTAGAAATCTATCACTGACTATAGGGACAACTCAgtgaggggcagacaacttgcaacgcacatcctcaatgtagccagaatcat #### Bscl2_ID2423_6 --> 0 - 2 Original Alignment TATGTGCCAACAACTGGAGCAATTATTGAGATCCACAGCAAGCGCATCCAGATGTAT-GGAGCCTACCTCCGGATCCATGCCCACTTCACTGGGCTCag atcctcaatgtagccagaatcatatgtaaacaattttcttgttcccacagTATGTGCCAACAACTGGAGCAATTATTGAAATCCACAGCAAGCGCATCCAGATGTATCGGAGCCTACCTCCGGATCCATGCCCACTTTACGGGGCTCaggtacaaaaattatagaaggaacagttttcctacaatgtgtcccaaatagt Alignment from CESAR TATGTGCCAACAACTGGAGCAATTATTGAGATCCACAGCAAGCGCATCCAGATGTAT-GGAGCCTACCTCCGGATCCATGCCCACTTCACTGGGCTCag atcctcaatgtagccagaatcatatgtaaacaattttcttgttcccacagTATGTGCCAACAACTGGAGCAATTATTGAAATCCACAGCAAGCGCATCCAGATGTATCGGAGCCTACCTCCGGATCCATGCCCACTTTACGGGGCTCaggtacaaaaattatagaaggaacagttttcctacaatgtgtcccaaatagt Alignment from Spaln_aa2Genome TATGTGCCAACAACTGGAGCAATTATTGAGATCCACAGCAAGCGCATCCAGATGTAT-GGAGCCTACCTCCGGATCCATGCCCACTTCACTGGGCTCAG atcctcaatgtagccagaatcatatgtaaacaattttcttgttcccacagTATGTGCCAACAACTGGAGCAATTATTGAAATCCACAGCAAGCGCATCCAGATGTATcGGAGCCTACCTCCGGATCCATGCCCACTTTACGGGGCTCAGgtacaaaaattatagaaggaacagttttcctacaatgtgtcccaaatagt Alignment from Spaln_nt2Genome TATGTGCCAACAACTGGAGCAATTATTGAGATCCACAGCAAGCGCATCCAGATGTAT-GGAGCCTACCTCCGGATCCATGCCCACTTCACTGGGCTCAG atcctcaatgtagccagaatcatatgtaaacaattttcttgttcccacagTATGTGCCAACAACTGGAGCAATTATTGAAATCCACAGCAAGCGCATCCAGATGTATCGGAGCCTACCTCCGGATCCATGCCCACTTTACGGGGCTCAGgtacaaaaattatagaaggaacagttttcctacaatgtgtcccaaatagt Alignment from Pairagon TATGTGCCAACAACTGGAGCAATTATTGAGATCCACAGCAAGCGCATCCAGATGTAT-GGAGCCTACCTCCGGATCCATGCCCACTTCACTGGGCTCAG atcctcaatgtagccagaatcatatgtaaacaattttcttgttcccacagTATGTGCCAACAACTGGAGCAATTATTGAAATCCACAGCAAGCGCATCCAGATGTATCGGAGCCTACCTCCGGATCCATGCCCACTTTACGGGGCTCAGgtacaaaaattatagaaggaacagttttcctacaatgtgtcccaaatagt Alignment from Exonerate_protein2genome TATGTGCCAACAACTGGAGCAATTATTGAGATCCACAGCAAGCGCATCCAGATGTAT-GGAGCCTACCTCCGGATCCATGCCCACTTCACTGGGCTCAG atcctcaatgtagccagaatcatatgtaaacaattttcttgttcccacagTATGTGCCAACAACTGGAGCAATTATTGAAATCCACAGCAAGCGCATCCAGATGTATCGGAGCCTACCTCCGGATCCATGCCCACTTTACGGGGCTCAGgtacaaaaattatagaaggaacagttttcctacaatgtgtcccaaatagt Alignment from Exonerate_coding2genome TATGTGCCAACAACTGGAGCAATTATTGAGATCCACAGCAAGCGCATCCAGATGTAT-GGAGCCTACCTCCGGATCCATGCCCACTTCACTGGGCTCAG atcctcaatgtagccagaatcatatgtaaacaattttcttgttcccacagTATGTGCCAACAACTGGAGCAATTATTGAAATCCACAGCAAGCGCATCCAGATGTATCGGAGCCTACCTCCGGATCCATGCCCACTTTACGGGGCTCAGgtacaaaaattatagaaggaacagttttcctacaatgtgtcccaaatagt Alignment from GeneWise TATGTGCCAACAACTGGAGCAATTATTGAGATCCACAGCAAGCGCATCCAGATGTAT-GGAGCCTACCTCCGGATCCATGCCCACTTCACTGGGCTCAG atcctcaatgtagccagaatcatatgtaaacaattttcttgttcccacagTATGTGCCAACAACTGGAGCAATTATTGAAATCCACAGCAAGCGCATCCAGATGTATCGGAGCCTACCTCCGGATCCATGCCCACTTTACGGGGCTCAGgtacaaaaattatagaaggaacagttttcctacaatgtgtcccaaatagt #### Bscl2_ID2425_8 --> 0 - 1 Original Alignment GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCG-CGTCGGATCTCGCGCCATCAGCCAg ttcctcagaggggagtctaggatcacaaccagcttcttctgtacctccagGTCAATACATGTCAAAGGGATAACTCACACCATGGA------CGACCACATTTCACACCATCAGCCAggtactaaaattggctattaggagtttggagaaaatacatttggagagtcc Alignment from CESAR GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGT-CGGATCTCGCGCCATCAGCCAg ttcctcagaggggagtctaggatcacaaccagcttcttctgtacctccagGTCAATACATGTCAAAGGGATAACTCACACCATGGA------CGACCACATTTCACACCATCAGCCAggtactaaaattggctattaggagtttggagaaaatacatttggagagtcc Alignment from Spaln_aa2Genome GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG ttcctcagaggggagtctaggatcacaaccagcttcttctgtacctccagGTCAATACATGTCAAAGGGATAACTCACACCATGGACGACCAC-----ATTTCACACCATCAGCCAGgtactaaaattggctattaggagtttggagaaaatacatttggagagtcc Alignment from Spaln_nt2Genome GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG ttcctcagaggggagtctaggatcacaaccagcttcttctgtacctccagGTCAATACATGTCAAAGGGATAACTCACACCATGGACGACCAC-----ATTTCACACCATCAGCCAGgtactaaaattggctattaggagtttggagaaaatacatttggagagtcc Alignment from Pairagon GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCAGCCAG ttcctcagaggggagtctaggatcacaaccagcttcttctgtacctccagGTCAATACATGTCAAAGGGATAACTCACACCATGGACGACCAC-----ATTTCACACCATCAGCCAGgtactaaaattggctattaggagtttggagaaaatacatttggagagtcc Alignment from Exonerate_protein2genome GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCA ttcctcagaggggagtctaggatcacaaccagcttcttctgtacctccagGTCAATACATGTCAAAGGGATAACTCACACCATGGACGACCACATTTCACACCATCAGCCAGgtactaaaattggctattaggagtttggagaaaatacatttggagagtcc Alignment from Exonerate_coding2genome GTTAATATCCGACAAAGGGATAACTCACACCACGGGGCCCCGCGTCGGATCTCGCGCCATCA ttcctcagaggggagtctaggatcacaaccagcttcttctgtacctccagGTCAATACATGTCAAAGGGATAACTCACACCATGGACGACCACATTTCACACCATCAGCCAGgtactaaaattggctattaggagtttggagaaaatacatttggagagtcc Alignment from GeneWise TCTCGCGCCATCAG TTCCTCAGAGGGGAgtctaggatcacaaccagcttcttctgtacctccaggtcaatacatgtcaaagggataactcacaccatggacgaccacatttcacaccatcagccaggtactaaaattggctattaggagtttggagaaaatacatttggagagtcc #### Bscl2_ID2426_9 --> 2 - 1 Original Alignment gtCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTGAA-GATCCCTCAGGAACAg gtgtgaaatcagtggctttggggtagagtgattgtcttcttcttttacaggtCAGGAATCCACCCAGCAGTCAGATGTTATGGAAGATGGTGAGAGCCCTGAACGATCCCTCAGGGACAggttagctcagtctcccttacatctttcttgacatacatttgcagttccag Alignment from CESAR gtCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTGAA-GATCCCTCAGGAACAg gtgtgaaatcagtggctttggggtagagtgattgtcttcttcttttacaggtCAGGAATCCACCCAGCAGTCAGATGTTATGGAAGATGGTGAGAGCCCTGAACGATCCCTCAGGGACAggttagctcagtctcccttacatctttcttgacatacatttgcagttccag Alignment from Spaln_aa2Genome GTCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTGAA-GATCCCTCAGGAACAG gtgtgaaatcagtggctttggggtagagtgattgtcttcttcttttacagGTCAGGAATCCACCCAGCAGTCAGATGTTATGGAAGATGGTGAGAGCCCTGAAcGATCCCTCAGGGACAGgttagctcagtctcccttacatctttcttgacatacatttgcagttccag Alignment from Spaln_nt2Genome GTCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTGAA-GATCCCTCAGGAACAG gtgtgaaatcagtggctttggggtagagtgattgtcttcttcttttacagGTCAGGAATCCACCCAGCAGTCAGATGTTATGGAAGATGGTGAGAGCCCTGAACGATCCCTCAGGGACAGgttagctcagtctcccttacatctttcttgacatacatttgcagttccag Alignment from Pairagon GTCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTGAA-GATCCCTCAGGAACAG gtgtgaaatcagtggctttggggtagagtgattgtcttcttcttttacagGTCAGGAATCCACCCAGCAGTCAGATGTTATGGAAGATGGTGAGAGCCCTGAACGATCCCTCAGGGACAGgttagctcagtctcccttacatctttcttgacatacatttgcagttccag Alignment from Exonerate_protein2genome GTCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTGAA-GATCCCTCAGGAACAG gtgtgaaatcagtggctttggggtagagtgattgtcttcttcttttacagGTCAGGAATCCACCCAGCAGTCAGATGTTATGGAAGATGGTGAGAGCCCTGAACGATCCCTCAGGGACAGgttagctcagtctcccttacatctttcttgacatacatttgcagttccag Alignment from Exonerate_coding2genome GTCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCTGAA-GATCCCTCAGGAACAG gtgtgaaatcagtggctttggggtagagtgattgtcttcttcttttacagGTCAGGAATCCACCCAGCAGTCAGATGTTATGGAAGATGGTGAGAGCCCTGAACGATCCCTCAGGGACAGgttagctcagtctcccttacatctttcttgacatacatttgcagttccag Alignment from GeneWise GTCAGGAATCTACCCAGCAGTCGGATGTGACGGAGGATGGTGAGAGCCCT-GAAGATCCCTCAGGAACAG gtgtgaaatcagtggctttggggtagagtgattgtcttcttcttttacagGTCAGGAATCCACCCAGCAGTCAGATGTTATGGAAGATGGTGAGAGCCCTGAACGATCCCTCAGGGACAGgttagctcagtctcccttacatctttcttgacatacatttgcagttccag #### Bscl2_ID2427_10 --> 2 - 1 Original Alignment agGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAG-CCAGAGGCTAGTGATg cagttccagcactctcccccctgtctcatctctgttccgaccctatccagagGGGCAA---CCAGAAGAGGAGAAAGCAAAGAAGTGGCCGCTGAATGGGGAGGAGGAGCGGGAGCCCGGACGCTGGTGATggtaagagtggggcagcatactcatagacaggggcactgtgtgctggggag Alignment from CESAR agGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCA-GAGGCTAGTGATg cagttccagcactctcccccctgtctcatctctgttccgaccctatccagagGGGCAA---CCAGAAGAGGAGAAAGCAAAGAAGTGGCCGCTGAATGGGGAGGAGGAGCGGGAGCCCGGACGCTGGTGATggtaagagtggggcagcatactcatagacaggggcactgtgtgctggggag Alignment from Spaln_aa2Genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAGAGGCTAGTGATG cagttccagcactctcccccctgtctcatctctgttccgaccctatccagAGGGGCAA---CCAGAAGAGGAGAAAGCAAAGAAGTGGCCGCTGAATGGGGAGGAGGAGCGGGAGCCC---------GGACgctggtgatggtaagagtggggcagcatactcatagacaggggcactgtgtgctggggag Alignment from Spaln_nt2Genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCAG-AGGCTAGTGATG cagttccagcactctcccccctgtctcatctctgttccgaccctatccagAGGGGCAAC---CAGAAGAGGAGAAAGCAAAGAAGTGGCCGCTGAATGGGGAGGAGGAGCGGGAGCCCGGACGCTGGTGATGgtaagagtggggcagcatactcatagacaggggcactgtgtgctggggag Alignment from Pairagon AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAG-CCAGAGGCTAGTGATG cagttccagcactctcccccctgtctcatctctgttccgaccctatccagAGGGGCAAC---CAGAAGAGGAGAAAGCAAAGAAGTGGCCGCTGAATGGGGAGGAGGAGCGGGAGCCCGGACGCTGGTGATGgtaagagtggggcagcatactcatagacaggggcactgtgtgctggggag Alignment from Exonerate_protein2genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAG-CCAGAGGCTAGTGATG cagttccagcactctcccccctgtctcatctctgttccgaccctatccagAGGGGCAA---CCAGAAGAGGAGAAAGCAAAGAAGTGGCCGCTGAATGGGGAGGAGGAGCGGGAGCCCGGACGCTGGTGATGgtaagagtggggcagcatactcatagacaggggcactgtgtgctggggag Alignment from Exonerate_coding2genome AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAG-CCAGAGGCTAGTGATG cagttccagcactctcccccctgtctcatctctgttccgaccctatccagAGGGGCAA---CCAGAAGAGGAGAAAGCAAAGAAGTGGCCGCTGAATGGGGAGGAGGAGCGGGAGCCCGGACGCTGGTGATGgtaagagtggggcagcatactcatagacaggggcactgtgtgctggggag Alignment from GeneWise AGGGCCAGCTGTCTGAGGAAGAGAAACCAGAGAAGCGGCCCCTGAATGGAGAGGAGGAGCAAGAGCCA-GAGGCTAGTGATG cagttccagcactctcccccctgtctcatctctgttccgaccctatccagAGGGGCAA---CCAGAAGAGGAGAAAGCAAAGAAGTGGCCGCTGAATGGGGAGGAGGAGCGGGAGCCCGGACGCTGGTGATGgtaagagtggggcagcatactcatagacaggggcactgtgtgctggggag #### Btaf1_ID7227_10 --> 0 - 0 Original Alignment ATGATTCAGCAGCATCAAGAGTGG-TTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA agtacagagttaatattcacctgttgtactttttgtttccccacctctagATCATTCAACAGCATCAAGAGTGGCTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCATTGGACAGATTTGGAGACTTTGTTTCTGATGAAgtaggtgcagggtaaaactatgttttggttgggggttcaaaataggtacc Alignment from CESAR ATGATTCAGCAGCATCAAGAGTGG-TTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA agtacagagttaatattcacctgttgtactttttgtttccccacctctagATCATTCAACAGCATCAAGAGTGGCTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCATTGGACAGATTTGGAGACTTTGTTTCTGATGAAgtaggtgcagggtaaaactatgttttggttgggggttcaaaataggtacc Alignment from Spaln_aa2Genome ATGATTCAGCAGCATCAAGAGTGG-TTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA agtacagagttaatattcacctgttgtactttttgtttccccacctctagATCATTCAACAGCATCAAGAGTGGcTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCATTGGACAGATTTGGAGACTTTGTTTCTGATGAAgtaggtgcagggtaaaactatgttttggttgggggttcaaaataggtacc Alignment from Spaln_nt2Genome ATGATTCAGCAGCATCAAGAGTGG-TTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA agtacagagttaatattcacctgttgtactttttgtttccccacctctagATCATTCAACAGCATCAAGAGTGGCTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCATTGGACAGATTTGGAGACTTTGTTTCTGATGAAgtaggtgcagggtaaaactatgttttggttgggggttcaaaataggtacc Alignment from Pairagon ATGATTCAGCAGCATCAAGAGTGG-TTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA agtacagagttaatattcacctgttgtactttttgtttccccacctctagATCATTCAACAGCATCAAGAGTGGCTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCATTGGACAGATTTGGAGACTTTGTTTCTGATGAAgtaggtgcagggtaaaactatgttttggttgggggttcaaaataggtacc Alignment from Exonerate_protein2genome ATGATTCAGCAGCATCAAGAGTGG-TTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA agtacagagttaatattcacctgttgtactttttgtttccccacctctagATCATTCAACAGCATCAAGAGTGGCTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCATTGGACAGATTTGGAGACTTTGTTTCTGATGAAgtaggtgcagggtaaaactatgttttggttgggggttcaaaataggtacc Alignment from Exonerate_coding2genome ATGATTCAGCAGCATCAAGAGTGG-TTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA agtacagagttaatattcacctgttgtactttttgtttccccacctctagATCATTCAACAGCATCAAGAGTGGCTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCATTGGACAGATTTGGAGACTTTGTTTCTGATGAAgtaggtgcagggtaaaactatgttttggttgggggttcaaaataggtacc Alignment from GeneWise ATGATTCAGCAGCATCAAGAGTGG-TTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCGTTGGACAGATTTGGAGACTTCGTTTCTGATGAA agtacagagttaatattcacctgttgtactttttgtttccccacctctagATCATTCAACAGCATCAAGAGTGGCTTGGAAGACTTAGTCATTAGACTCCTTTGTGTTTTTGCATTGGACAGATTTGGAGACTTTGTTTCTGATGAAgtaggtgcagggtaaaactatgttttggttgggggttcaaaataggtacc #### Btrc_ID9458_8 --> 0 - 0 Original Alignment ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAA-ACAAGTAAAGGGGTTTACTGTTTACAGTACGACGACCAGAAGATAGTCAGCGGCCTTCGAGACAACACCATCAAG acaatgggtagttagactgttttcattgccactctctccccttccccaagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAACACAAGTAAAGGGGTTTACTGTTTACAGTATGATGATCAGAAGATAGTCAGTGGCCTTCGAGACAACACCATCAAGgtaagtgggaccacttctgtggagaagcaaacatccatagagtagtgtac Alignment from CESAR ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAA-ACAAGTAAAGGGGTTTACTGTTTACAGTACGACGACCAGAAGATAGTCAGCGGCCTTCGAGACAACACCATCAAG acaatgggtagttagactgttttcattgccactctctccccttccccaagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAACACAAGTAAAGGGGTTTACTGTTTACAGTATGATGATCAGAAGATAGTCAGTGGCCTTCGAGACAACACCATCAAGgtaagtgggaccacttctgtggagaagcaaacatccatagagtagtgtac Alignment from Spaln_aa2Genome ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAA-ACAAGTAAAGGGGTTTACTGTTTACAGTACGACGACCAGAAGATAGTCAGCGGCCTTCGAGACAACACCATCAAG acaatgggtagttagactgttttcattgccactctctccccttccccaagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAAcACAAGTAAAGGGGTTTACTGTTTACAGTATGATGATCAGAAGATAGTCAGTGGCCTTCGAGACAACACCATCAAGgtaagtgggaccacttctgtggagaagcaaacatccatagagtagtgtac Alignment from Spaln_nt2Genome ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAA-ACAAGTAAAGGGGTTTACTGTTTACAGTACGACGACCAGAAGATAGTCAGCGGCCTTCGAGACAACACCATCAAG acaatgggtagttagactgttttcattgccactctctccccttccccaagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAACACAAGTAAAGGGGTTTACTGTTTACAGTATGATGATCAGAAGATAGTCAGTGGCCTTCGAGACAACACCATCAAGgtaagtgggaccacttctgtggagaagcaaacatccatagagtagtgtac Alignment from Pairagon ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAA-ACAAGTAAAGGGGTTTACTGTTTACAGTACGACGACCAGAAGATAGTCAGCGGCCTTCGAGACAACACCATCAAG acaatgggtagttagactgttttcattgccactctctccccttccccaagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAACACAAGTAAAGGGGTTTACTGTTTACAGTATGATGATCAGAAGATAGTCAGTGGCCTTCGAGACAACACCATCAAGgtaagtgggaccacttctgtggagaagcaaacatccatagagtagtgtac Alignment from Exonerate_protein2genome ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAA-ACAAGTAAAGGGGTTTACTGTTTACAGTACGACGACCAGAAGATAGTCAGCGGCCTTCGAGACAACACCATCAAG acaatgggtagttagactgttttcattgccactctctccccttccccaagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAACACAAGTAAAGGGGTTTACTGTTTACAGTATGATGATCAGAAGATAGTCAGTGGCCTTCGAGACAACACCATCAAGgtaagtgggaccacttctgtggagaagcaaacatccatagagtagtgtac Alignment from Exonerate_coding2genome ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAA-ACAAGTAAAGGGGTTTACTGTTTACAGTACGACGACCAGAAGATAGTCAGCGGCCTTCGAGACAACACCATCAAG acaatgggtagttagactgttttcattgccactctctccccttccccaagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAACACAAGTAAAGGGGTTTACTGTTTACAGTATGATGATCAGAAGATAGTCAGTGGCCTTCGAGACAACACCATCAAGgtaagtgggaccacttctgtggagaagcaaacatccatagagtagtgtac Alignment from GeneWise ACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGAATCCACTGCCGGAGTGAA-ACAAGTAAAGGGGTTTACTGTTTACAGTACGACGACCAGAAGATAGTCAGCGGCCTTCGAGACAACACCATCAAG acaatgggtagttagactgttttcattgccactctctccccttccccaagACAATAGAGTCCAATTGGAGATGTGGGCGACATAGTTTACAGAGGATTTACTGCCGGAGTGAACACAAGTAAAGGGGTTTACTGTTTACAGTATGATGATCAGAAGATAGTCAGTGGCCTTCGAGACAACACCATCAAGgtaagtgggaccacttctgtggagaagcaaacatccatagagtagtgtac #### Cabp2_ID287_2 --> 0 - 0 Original Alignment GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGCATC-TTCCTTCGACCCAGCATCGCGGCTACCCAGCTC catactgacaaatgtatgtgggcattgctaaaatgatttgtctttttaagGTCCGCTGGCAATGGCCTGGATCCCCCTTAGGGGGCTCACGCCCCAGCCCGGGTCCAAGAACTGAGGAACAGGAGGGGACACAGGGCTACTCAGTGCTTGGTAGCCTTGTAGGACCTGCATGCATTCTTCCTGCGACCTAGCATAGCTGCTACCCAGCTTgtgaggacataatcccttgcacactggcatcttagggctgatggccgcat Alignment from CESAR GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGCATC-TTCCTTCGACCCAGCATCGCGGCTACCCAGCTC catactgacaaatgtatgtgggcattgctaaaatgatttgtctttttaagGTCCGCTGGCAATGGCCTGGATCCCCCTTAGGGGGCTCACGCCCCAGCCCGGGTCCAAGAACTGAGGAACAGGAGGGGACACAGGGCTACTCAGTGCTTGGTAGCCTTGTAGGACCTGCATGCATTCTTCCTGCGACCTAGCATAGCTGCTACCCAGCTTgtgaggacataatcccttgcacactggcatcttagggctgatggccgcat Alignment from Spaln_aa2Genome GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGCATC-TTCCTTCGACCCAGCATCGCGGCTACCCAGCTC catactgacaaatgtatgtgggcattgctaaaatgatttgtctttttaagGTCCGCTGGCAATGGCCTGGATCCCCCTTAGGGGGCTCACGCCCCAGCCCGGGTCCAAGAACTGAGGAACAGGAGGGGACACAGGGCTACTCAGTGCTTGGTAGCCTTGTAGGACCTGCATGCATTcTTCCTGCGACCTAGCATAGCTGCTACCCAGCTTgtgaggacataatcccttgcacactggcatcttagggctgatggccgcat Alignment from Spaln_nt2Genome GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGCA-TCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTC catactgacaaatgtatgtgggcattgctaaaatgatttgtctttttaagGTCCGCTGGCAATGGCCTGGATCCCCCTTAGGGGGCTCACGCCCCAGCCCGGGTCCAAGAACTGAGGAACAGGAGGGGACACAGGGCTACTCAGTGCTTGGTAGCCTTGTAGGACCTGCATGCATTCTTCCTGCGACCTAGCATAGCTGCTACCCAGCTTgtgaggacataatcccttgcacactggcatcttagggctgatggccgcat Alignment from Pairagon GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGCA-TCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTC catactgacaaatgtatgtgggcattgctaaaatgatttgtctttttaagGTCCGCTGGCAATGGCCTGGATCCCCCTTAGGGGGCTCACGCCCCAGCCCGGGTCCAAGAACTGAGGAACAGGAGGGGACACAGGGCTACTCAGTGCTTGGTAGCCTTGTAGGACCTGCATGCATTCTTCCTGCGACCTAGCATAGCTGCTACCCAGCTTgtgaggacataatcccttgcacactggcatcttagggctgatggccgcat Alignment from Exonerate_protein2genome GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGCATC-TTCCTTCGACCCAGCATCGCGGCTACCCAGCTCGATCGAGAGCTGAGACCAGAAGAGATCGAAG catactgacaaatgtatgtgggcattgctaaaatgatttgtctttttaagGTCCGCTGGCAATGGCCTGGATCCCCCTTAGGGGGCTCACGCCCCAGCCCGGGTCCAAGAACTGAGGAACAGGAGGGGACACAGGGCTACTCAGTGCTTGGTAGCCTTGTAGGACCTGCATGCATTCTTCCTGCGACCTAGCATAGCTGCTACCCAGCTTGTGAGGACATAATCCCTTGCACACTGGCATCttagggctgatggccgcat Alignment from Exonerate_coding2genome GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGCATC-TTCCTTCGACCCAGCATCGCGGCTACCCAGCTCGATCGAGAGCTGAGACCAGAAGAGATCGAAG catactgacaaatgtatgtgggcattgctaaaatgatttgtctttttaagGTCCGCTGGCAATGGCCTGGATCCCCCTTAGGGGGCTCACGCCCCAGCCCGGGTCCAAGAACTGAGGAACAGGAGGGGACACAGGGCTACTCAGTGCTTGGTAGCCTTGTAGGACCTGCATGCATTCTTCCTGCGACCTAGCATAGCTGCTACCCAGCTTGTGAGGACATAATCCCTTGCACACTGGCATCttagggctgatggccgcat Alignment from GeneWise GAACGCTGGCAGTGGCCTGGATCCCCCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGC-ATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTC catactgacaaatgtatgtgggcattgctaaaatgatttgtctttttaagGTCCGCTGGCAATGGCCTGGATCCCCCTTAGGGGGCTCACGCCCCAGCCCGGGTCCAAGAACTGAGGAACAGGAGGGGACACAGGGCTACTCAGTGCTTGGTAGCCTTGTAGGACCTGCATGCATTCTTCCTGCGACCTAGCATAGCTGCTACCCAGCTTgtgaggacataatcccttgcacactggcatcttagggctgatggccgcat #### Cabp2_ID288_3 --> 0 - 1 Original Alignment GATCGAGAGCTGAGA-CCAGAAGAGATCGAAg gttgttatactaaagattggaggggctccagaaccttgctttctttccagGACCGGGAG---AGACCCAGAAAAAATTGAAggtaaagattctatagctgaggtacagtgtatgctcaggattacaaaaaaa Alignment from CESAR GATCGAGAGCTGAGA-CCAGAAGAGATCGAAg gttgttatactaaagattggaggggctccagaaccttgctttctttccagGACCGGGAG---AGACCCAGAAAAAATTGAAggtaaagattctatagctgaggtacagtgtatgctcaggattacaaaaaaa Alignment from Spaln_aa2Genome GCTCGATCGAGAGCTGAGACCAGAAGAGATCGAAG gttgttatactaaagattggaggggctccagaaccttgctttctttccagGACCGGGAGAGAC------CCAGAAAAAATTGAAGgtaaagattctatagctgaggtacagtgtatgctcaggattacaaaaaaa Alignment from Spaln_nt2Genome GATCGAGAGCTGAGACC-AGAAGAGATCGAAG gttgttatactaaagattggaggggctccagaaccttgctttctttccagGACCGGGA---GAGACCCAGAAAAAATTGAAGgtaaagattctatagctgaggtacagtgtatgctcaggattacaaaaaaa Alignment from Pairagon GATCGAGAGCTGAGA-CCAGAAGAGATCGAAG gttgttatactaaagattggaggggctccagaaccttgctttctttccagGACCGGGA---GAGACCCAGAAAAAATTGAAGgtaaagattctatagctgaggtacagtgtatgctcaggattacaaaaaaa Alignment from Exonerate_protein2genome gttgttatactaaagattggaggggctccagaaccttgctttctttccaggaccgggagagacccagaaaaaattgaaggtaaagattctatagctgaggtacagtgtatgctcaggattacaaaaaaa Alignment from Exonerate_coding2genome gttgttatactaaagattggaggggctccagaaccttgctttctttccaggaccgggagagacccagaaaaaattgaaggtaaagattctatagctgaggtacagtgtatgctcaggattacaaaaaaa Alignment from GeneWise gttgttatactaaagattggaggggctccagaaccttgctttctttccaggaccgggagagacccagaaaaaattgaaggtaaagattctatagctgaggtacagtgtatgctcaggattacaaaaaaa #### Cabp2_ID289_4 --> 2 - 1 Original Alignment agCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTAC-CGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCa tcacccccttataacaaccagggcgaaatggttgtttttgtggatggcagagCTGCAGATAGGCTTCCAGGAGTTTGACCGAGATAGGGATGGCTACATCGGGTACCCGGGAGCTGGGTGCCTGCATGCAGACACTGGGATACATGCCCACAGAGATGGCGCTCATTGAGATATCACAACAGGTTagtgagtggttactctatcgcctggtggacatagccctcaggcagatgtgt Alignment from CESAR agCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTAC-CGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCa tcacccccttataacaaccagggcgaaatggttgtttttgtggatggcagagCTGCAGATAGGCTTCCAGGAGTTTGACCGAGATAGGGATGGCTACATCGGGTACCCGGGAGCTGGGTGCCTGCATGCAGACACTGGGATACATGCCCACAGAGATGGCGCTCATTGAGATATCACAACAGGTTagtgagtggttactctatcgcctggtggacatagccctcaggcagatgtgt Alignment from Spaln_aa2Genome AGCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTAC-CGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCA tcacccccttataacaaccagggcgaaatggttgtttttgtggatggcagAGCTGCAGATAGGCTTCCAGGAGTTTGACCGAGATAGGGATGGCTACATCGGGTACcCGGGAGCTGGGTGCCTGCATGCAGACACTGGGATACATGCCCACAGAGATGGCGCTCATTGAGATATCACAACAGGTTAgtgagtggttactctatcgcctggtggacatagccctcaggcagatgtgt Alignment from Spaln_nt2Genome AGCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTACC-GGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCA tcacccccttataacaaccagggcgaaatggttgtttttgtggatggcagAGCTGCAGATAGGCTTCCAGGAGTTTGACCGAGATAGGGATGGCTACATCGGGTACCCGGGAGCTGGGTGCCTGCATGCAGACACTGGGATACATGCCCACAGAGATGGCGCTCATTGAGATATCACAACAGGTTAgtgagtggttactctatcgcctggtggacatagccctcaggcagatgtgt Alignment from Pairagon AGCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTA-CCGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCA tcacccccttataacaaccagggcgaaatggttgtttttgtggatggcagAGCTGCAGATAGGCTTCCAGGAGTTTGACCGAGATAGGGATGGCTACATCGGGTACCCGGGAGCTGGGTGCCTGCATGCAGACACTGGGATACATGCCCACAGAGATGGCGCTCATTGAGATATCACAACAGGTTAgtgagtggttactctatcgcctggtggacatagccctcaggcagatgtgt Alignment from Exonerate_protein2genome AGCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTAC-CGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCA tcacccccttataacaaccagggcgaaatggttgtttttgtggatggcagAGCTGCAGATAGGCTTCCAGGAGTTTGACCGAGATAGGGATGGCTACATCGGGTACCCGGGAGCTGGGTGCCTGCATGCAGACACTGGGATACATGCCCACAGAGATGGCGCTCATTGAGATATCACAACAGGTTAgtgagtggttactctatcgcctggtggacatagccctcaggcagatgtgt Alignment from Exonerate_coding2genome AGCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTAC-CGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCA tcacccccttataacaaccagggcgaaatggttgtttttgtggatggcagAGCTGCAGATAGGCTTCCAGGAGTTTGACCGAGATAGGGATGGCTACATCGGGTACCCGGGAGCTGGGTGCCTGCATGCAGACACTGGGATACATGCCCACAGAGATGGCGCTCATTGAGATATCACAACAGGTTAgtgagtggttactctatcgcctggtggacatagccctcaggcagatgtgt Alignment from GeneWise AGCTGCAGATCGCCTTCCAGGAGTTTGACCGAGACCGGGACGGCTACATCGGCTAC-CGGGAGCTGGGTGCCTGCATGCGGACACTGGGCTACATGCCCACGGAGATGGAGCTCATTGAGATATCACAACAGATCA tcacccccttataacaaccagggcgaaatggttgtttttgtggatggcagAGCTGCAGATAGGCTTCCAGGAGTTTGACCGAGATAGGGATGGCTACATCGGGTACCCGGGAGCTGGGTGCCTGCATGCAGACACTGGGATACATGCCCACAGAGATGGCGCTCATTGAGATATCACAACAGGTTAgtgagtggttactctatcgcctggtggacatagccctcaggcagatgtgt #### Cabp2_ID290_5 --> 2 - 0 Original Alignment gtGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGAC-ATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagccatgcaccaacccaagccctctcagcctggtctctgtgccttaggtGGTGGGAAGGTTCACTTTGAAGTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCGGACCATGATTGGGGAAAGAGAACTTAAAGATGCTTTTAGGGAGgtaagtcttaggtagtgggtggcagtggttgaaggatttatggttcagta Alignment from CESAR gtGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGAC-ATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagccatgcaccaacccaagccctctcagcctggtctctgtgccttaggtGGTGGGAAGGTTCACTTTGAAGTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCGGACCATGATTGGGGAAAGAGAACTTAAAGATGCTTTTAGGGAGgtaagtcttaggtagtgggtggcagtggttgaaggatttatggttcagta Alignment from Spaln_aa2Genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGAC-ATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagccatgcaccaacccaagccctctcagcctggtctctgtgccttagGTGGTGGGAAGGTTCACTTTGAAGTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCGGACcATGATTGGGGAAAGAGAACTTAAAGATGCTTTTAGGGAGgtaagtcttaggtagtgggtggcagtggttgaaggatttatggttcagta Alignment from Spaln_nt2Genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGAC-ATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagccatgcaccaacccaagccctctcagcctggtctctgtgccttagGTGGTGGGAAGGTTCACTTTGAAGTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCGGACCATGATTGGGGAAAGAGAACTTAAAGATGCTTTTAGGGAGgtaagtcttaggtagtgggtggcagtggttgaaggatttatggttcagta Alignment from Pairagon GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGA-CATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagccatgcaccaacccaagccctctcagcctggtctctgtgccttagGTGGTGGGAAGGTTCACTTTGAAGTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCGGACCATGATTGGGGAAAGAGAACTTAAAGATGCTTTTAGGGAGgtaagtcttaggtagtgggtggcagtggttgaaggatttatggttcagta Alignment from Exonerate_protein2genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGAC-ATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagccatgcaccaacccaagccctctcagcctggtctctgtgccttagGTGGTGGGAAGGTTCACTTTGAAGTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCGGACCATGATTGGGGAAAGAGAACTTAAAGATGCTTTTAGGGAGgtaagtcttaggtagtgggtggcagtggttgaaggatttatggttcagta Alignment from Exonerate_coding2genome GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGAC-ATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagccatgcaccaacccaagccctctcagcctggtctctgtgccttagGTGGTGGGAAGGTTCACTTTGAAGTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCGGACCATGATTGGGGAAAGAGAACTTAAAGATGCTTTTAGGGAGgtaagtcttaggtagtgggtggcagtggttgaaggatttatggttcagta Alignment from GeneWise GTGGTGGGAAGGTGGATTTTGAAGATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGAC-ATGATTGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAG gttagccatgcaccaacccaagccctctcagcctggtctctgtgccttagGTGGTGGGAAGGTTCACTTTGAAGTCTTTGTAGAGCTGATGGGTCCCAAGCTACTAGTAGAGACAGCGGACCATGATTGGGGAAAGAGAACTTAAAGATGCTTTTAGGGAGgtaagtcttaggtagtgggtggcagtggttgaaggatttatggttcagta #### Cabp4_ID342_2 --> 0 - 1 Original Alignment GATCGTGAACTG-GGCCCTGAGGAGTTGGAGg gcaggctcatctctgtcagggattttggtctctcctccccctgcccgcagGATCGTGAGCTGCGGACCTGAGGAGTTGGAGggtatccgtttctcactgttgatgagaagtgtaaaggaagtttgatactat Alignment from CESAR GATCGTGAACTG-GGCCCTGAGGAGTTGGAGg gcaggctcatctctgtcagggattttggtctctcctccccctgcccgcagGATCGTGAGCTGCGGACCTGAGGAGTTGGAGggtatccgtttctcactgttgatgagaagtgtaaaggaagtttgatactat Alignment from Spaln_aa2Genome GATCGTGAACTG-GGCCCTGAGGAGTTGGAGG gcaggctcatctctgtcagggattttggtctctcctccccctgcccgcagGATCGTGAGCTGcGGACCTGAGGAGTTGGAGGgtatccgtttctcactgttgatgagaagtgtaaaggaagtttgatactat Alignment from Spaln_nt2Genome GATCGTGAACTG-GGCCCTGAGGAGTTGGAGG gcaggctcatctctgtcagggattttggtctctcctccccctgcccgcagGATCGTGAGCTGCGGACCTGAGGAGTTGGAGGgtatccgtttctcactgttgatgagaagtgtaaaggaagtttgatactat Alignment from Pairagon GATCGTGAACTG-GGCCCTGAGGAGTTGGAGG gcaggctcatctctgtcagggattttggtctctcctccccctgcccgcagGATCGTGAGCTGCGGACCTGAGGAGTTGGAGGgtatccgtttctcactgttgatgagaagtgtaaaggaagtttgatactat Alignment from Exonerate_protein2genome GATCGTGAACTG-GGCCCTGAGGAGTTGGAGG gcaggctcatctctgtcagggattttggtctctcctccccctgcccgcagGATCGTGAGCTGCGGACCTGAGGAGTTGGAGGgtatccgtttctcactgttgatgagaagtgtaaaggaagtttgatactat Alignment from Exonerate_coding2genome gcaggctcatctctgtcagggattttggtctctcctccccctgcccgcaggatcgtgagctgcggacctgaggagttggagggtatccgtttctcactgttgatgagaagtgtaaaggaagtttgatactat Alignment from GeneWise gcaggctcatctctgtcagggattttggtctctcctccccctgcccgcaggatcgtgagctgcggacctgaggagttggagggtatccgtttctcactgttgatgagaagtgtaaaggaagtttgatactat #### Capn1_ID1356_20 --> 2 - 0 Original Alignment ggTTTTTCAAACTTCTG-GACACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG cctctgcctttatgtgtggttcgctgccaacttactttttgtatcattagggTTTTCTAAACTACTACGACCGAGGCCTAGACGGTGTTGTTACCTTTGATCTCTTTAGGgtagctgagtactccaccccacttgactagctatccgggggtgctgctac Alignment from CESAR ggTTTTTCAAACTTCTG-GACACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG cctctgcctttatgtgtggttcgctgccaacttactttttgtatcattagggTTTTCTAAACTACTACGACCGAGGCCTAGACGGTGTTGTTACCTTTGATCTCTTTAGGgtagctgagtactccaccccacttgactagctatccgggggtgctgctac Alignment from Spaln_aa2Genome CGGTTTTTCAAACTTCTGGACACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG cctctgcctttatgtgtggttcgctgccaacttactttttgtatcattagGGTTTTCTAAACTACTACGACCGAGGCCTAGACGGTGTTGTTACCTTTGATCTCTTTAGGgtagctgagtactccaccccacttgactagctatccgggggtgctgctac Alignment from Spaln_nt2Genome GGTTTTTCAAACTTCTG-GACACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG cctctgcctttatgtgtggttcgctgccaacttactttttgtatcattagGGTTTTCTAAACTACTACGACCGAGGCCTAGACGGTGTTGTTACCTTTGATCTCTTTAGGgtagctgagtactccaccccacttgactagctatccgggggtgctgctac Alignment from Pairagon GGTTTTTCAAACTTCTG-GACACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG cctctgcctttatgtgtggttcgctgccaacttactttttgtatcattagGGTTTTCTAAACTACTACGACCGAGGCCTAGACGGTGTTGTTACCTTTGATCTCTTTAGGgtagctgagtactccaccccacttgactagctatccgggggtgctgctac Alignment from Exonerate_protein2genome GGTTTTTCAAACTTCTGGACACAGACCTGGATGGTGTTGTGACCTTTGATCTATTTAAG cctctgcctttatgtgtggttcgctgccaacttactttttgtatcattaggGTTTTCTAAACTACTACGACCGAGGCCTAGACGGTGTTGTTACCTTTGATCTCTTTAGGgtagctgagtactccaccccacttgactagctatccgggggtgctgctac Alignment from Exonerate_coding2genome cctctgcctttatgtgtggttcgctgccaacttactttttgtatcattagggttttctaaactactacgaccgaggcctagacggtgttgttacctttgatctctttagggtagctgagtactccaccccacttgactagctatccgggggtgctgctac Alignment from GeneWise cctctgcctttatgtgtggttcgctgccaacttactttttgtatcattagggttttctaaactactacgaccgaggcctagacggtgttgttacctttgatctctttagggtagctgagtactccaccccacttgactagctatccgggggtgctgctac #### Capn1_ID1359_17 --> 0 - 0 Original Alignment CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGG-AACCGCATCCGAAATTACCTG tgatgaaggatgcttaagccaaagcactacttctcttctgtctctttcagCGAGATGGAAATGGGAAGTTAGGGCTGGTGGAATTCAACATCCTATGGCAACCATATCCGAAATTATCTGgtaagggatgagatgctctctggcatgttccctgggagcccagtggaatt Alignment from CESAR CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGG-AACCGCATCCGAAATTACCTG tgatgaaggatgcttaagccaaagcactacttctcttctgtctctttcagCGAGATGGAAATGGGAAGTTAGGGCTGGTGGAATTCAACATCCTATGGCAACCATATCCGAAATTATCTGgtaagggatgagatgctctctggcatgttccctgggagcccagtggaatt Alignment from Spaln_aa2Genome CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGG-AACCGCATCCGAAATTACCTG tgatgaaggatgcttaagccaaagcactacttctcttctgtctctttcagCGAGATGGAAATGGGAAGTTAGGGCTGGTGGAATTCAACATCCTATGGcAACCATATCCGAAATTATCTGgtaagggatgagatgctctctggcatgttccctgggagcccagtggaatt Alignment from Spaln_nt2Genome CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGG-AACCGCATCCGAAATTACCTG tgatgaaggatgcttaagccaaagcactacttctcttctgtctctttcagCGAGATGGAAATGGGAAGTTAGGGCTGGTGGAATTCAACATCCTATGGCAACCATATCCGAAATTATCTGgtaagggatgagatgctctctggcatgttccctgggagcccagtggaatt Alignment from Pairagon CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGG-AACCGCATCCGAAATTACCTG tgatgaaggatgcttaagccaaagcactacttctcttctgtctctttcagCGAGATGGAAATGGGAAGTTAGGGCTGGTGGAATTCAACATCCTATGGCAACCATATCCGAAATTATCTGgtaagggatgagatgctctctggcatgttccctgggagcccagtggaatt Alignment from Exonerate_protein2genome CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGG-AACCGCATCCGAAATTACCTG tgatgaaggatgcttaagccaaagcactacttctcttctgtctctttcagCGAGATGGAAATGGGAAGTTAGGGCTGGTGGAATTCAACATCCTATGGCAACCATATCCGAAATTATCTGgtaagggatgagatgctctctggcatgttccctgggagcccagtggaatt Alignment from Exonerate_coding2genome tgatgaaggatgcttaagccaaagcactacttctcttctgtctctttcagcgagatggaaatgggaagttagggctggtggaattcaacatcctatggcaaccatatccgaaattatctggtaagggatgagatgctctctggcatgttccctgggagcccagtggaatt Alignment from GeneWise CGAGATGGCAACGGGAAGCTGGGTCTGGTGGAGTTCAACATCCTGTGG-AACCGCATCCGAAATTACCTG tgatgaaggatgcttaagccaaagcactacttctcttctgtctctttcagCGAGATGGAAATGGGAAGTTAGGGCTGGTGGAATTCAACATCCTATGGCAACCATATCCGAAATTATCTGgtaagggatgagatgctctctggcatgttccctgggagcccagtggaatt #### Capn1_ID1369_7 --> 0 - 2 Original Alignment GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAA-GGACCCTGGAGTGACag ggggggagtgtgtcctgactctgatgccttcctgttgctttcttccaaagGTAACCTATCAGGGCCCACGAGTGAACCTTATTCGTATGTGGAATTCCTGGGGTCCAGTGGAGTGGAAACGGTCCTTGGAGTGACaggtgggcgaatgcaggcagttttttggagatggttttacaatcaagctcct Alignment from CESAR GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAA-GGACCCTGGAGTGACag ggggggagtgtgtcctgactctgatgccttcctgttgctttcttccaaagGTAACCTATCAGGGCCCACGAGTGAACCTTATTCGTATGTGGAATTCCTGGGGTCCAGTGGAGTGGAAACGGTCCTTGGAGTGACaggtgggcgaatgcaggcagttttttggagatggttttacaatcaagctcct Alignment from Spaln_aa2Genome GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAA-GGACCCTGGAGTGACAG ggggggagtgtgtcctgactctgatgccttcctgttgctttcttccaaagGTAACCTATCAGGGCCCACGAGTGAACCTTATTCGTATGTGGAATTCCTGGGGTCCAGTGGAGTGGAAAcGGTCCTTGGAGTGACAGgtgggcgaatgcaggcagttttttggagatggttttacaatcaagctcct Alignment from Spaln_nt2Genome GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAA-GGACCCTGGAGTGACAG ggggggagtgtgtcctgactctgatgccttcctgttgctttcttccaaagGTAACCTATCAGGGCCCACGAGTGAACCTTATTCGTATGTGGAATTCCTGGGGTCCAGTGGAGTGGAAACGGTCCTTGGAGTGACAGgtgggcgaatgcaggcagttttttggagatggttttacaatcaagctcct Alignment from Pairagon GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAA-GGACCCTGGAGTGACAG ggggggagtgtgtcctgactctgatgccttcctgttgctttcttccaaagGTAACCTATCAGGGCCCACGAGTGAACCTTATTCGTATGTGGAATTCCTGGGGTCCAGTGGAGTGGAAACGGTCCTTGGAGTGACAGgtgggcgaatgcaggcagttttttggagatggttttacaatcaagctcct Alignment from Exonerate_protein2genome GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAA-GGACCCTGGAGTGACAG ggggggagtgtgtcctgactctgatgccttcctgttgctttcttccaaagGTAACCTATCAGGGCCCACGAGTGAACCTTATTCGTATGTGGAATTCCTGGGGTCCAGTGGAGTGGAAACGGTCCTTGGAGTGACAGgtgggcgaatgcaggcagttttttggagatggttttacaatcaagctcct Alignment from Exonerate_coding2genome GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAA-GGACCCTGGAGTGACAG ggggggagtgtgtcctgactctgatgccttcctgttgctttcttccaaagGTAACCTATCAGGGCCCACGAGTGAACCTTATTCGTATGTGGAATTCCTGGGGTCCAGTGGAGTGGAAACGGTCCTTGGAGTGACAGgtgggcgaatgcaggcagttttttggagatggttttacaatcaagctcct Alignment from GeneWise GTAACTTACCAGGGCCAGCGGGTGAACCTAATCCGGATGCGGAACCCCTGGGGTGAAGTGGAGTGGAAAGG ggggggagtgtgtcctgactctgatgccttcctgttgctttcttccaaagGTAACCTATCAGGGCCCACGAGTGAACCTTATTCGTATGTGGAATTCCTGGGGTCCAGTGGAGTGGAAACGgtccttggagtgacaggtgggcgaatgcaggcagttttttggagatggttttacaatcaagctcct #### Carns1_ID387_5 --> 0 - 1 Original Alignment GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCC-ACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAg gcGGTCCTGCACCTGG gtgtacatgtagtagtaattgtgtaaaggagtttgcaactatcatttcagGTGGCAGCAAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTCTACATCTACAGGTAAAACCATCCCACAGTGGTGACAATGGTGCTAGGATTGTTAAAGAAGCTGGAAGAGGAGGAGAGTGTCCTTGTGGAGCCAATTTGTCCGCCTGTCCGCCTGCCCTTGCCAggtgggttgtaatactgtgtgttcgatttttccaggaGGTCCTCCACCTGG Alignment from CESAR GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCC-ACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAg gcGGTCCTGCACCTGG gtgtacatgtagtagtaattgtgtaaaggagtttgcaactatcatttcagGTGGCAGCAAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTCTACATCTACAGGTAAAACCATCCCACAGTGGTGACAATGGTGCTAGGATTGTTAAAGAAGCTGGAAGAGGAGGAGAGTGTCCTTGTGGAGCCAATTTGTCCGCCTGTCCGCCTGCCCTTGCCAggtgggttgtaatccctccacccctccttgtgcaggaGGTCCTCCACCTGG Alignment from Spaln_aa2Genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCC-ACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTA----------------------------------CCAGGCGGTCCTGCACCTGG gtgtacatgtagtagtaattgtgtaaaggagtttgcaactatcatttcagGTGGCAGCAAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTCTACATCTACAGGTAAAACCATCCcACAGTGGTGACAATGGTGCTAGGATTGTTAAAGAAGCTGGAAGAGGAGGAGAGTGTCCTTGTGGAGCCAATTTGTCCGCCTGTCCGCCTGCCCTTGCCAGGTGGGTTGTAATACTGTGTGTTCGATTTTtCCAGGAGGTCCTCCACCTGG Alignment from Spaln_nt2Genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCC-ACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCC----------------------------------TTACCAGGCGGTCCTGCACCTGG gtgtacatgtagtagtaattgtgtaaaggagtttgcaactatcatttcagGTGGCAGCAAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTCTACATCTACAGGTAAAACCATCCCACAGTGGTGACAATGGTGCTAGGATTGTTAAAGAAGCTGGAAGAGGAGGAGAGTGTCCTTGTGGAGCCAATTTGTCCGCCTGTCCGCCTGCCCTTGCCAGGTGGGTTGTAATACTGTGTGTTCGATTTTTCCAGGAGGTCCTCCACCTGG Alignment from Pairagon GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCAT-CCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG GCGGTCCTGCACCTGG gtgtacatgtagtagtaattgtgtaaaggagtttgcaactatcatttcagGTGGCAGCAAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTCTACATCTACAGGTAAAACCATCCCACAGTGGTGACAATGGTGCTAGGATTGTTAAAGAAGCTGGAAGAGGAGGAGAGTGTCCTTGTGGAGCCAATTTGTCCGCCTGTCCGCCTGCCCTTGCCAGgtgggttgtaatactgtgtgttcgatttttccagGAGGTCCTCCACCTGG Alignment from Exonerate_protein2genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCC-ACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG GCGGTCCTGCACCTGG gtgtacatgtagtagtaattgtgtaaaggagtttgcaactatcatttcagGTGGCAGCAAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTCTACATCTACAGGTAAAACCATCCCACAGTGGTGACAATGGTGCTAGGATTGTTAAAGAAGCTGGAAGAGGAGGAGAGTGTCCTTGTGGAGCCAATTTGTCCGCCTGTCCGCCTGCCCTTGCCAGgtgggttgtaatactgtgtgttcgatttttccagGAGGTCCTCCACCTGG Alignment from Exonerate_coding2genome GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCATCC-ACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG GCGGTCCTGCACCTGG gtgtacatgtagtagtaattgtgtaaaggagtttgcaactatcatttcagGTGGCAGCAAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTCTACATCTACAGGTAAAACCATCCCACAGTGGTGACAATGGTGCTAGGATTGTTAAAGAAGCTGGAAGAGGAGGAGAGTGTCCTTGTGGAGCCAATTTGTCCGCCTGTCCGCCTGCCCTTGCCAGgtgggttgtaatactgtgtgttcgatttttccagGAGGTCCTCCACCTGG Alignment from GeneWise GTGGCTGTGAGGCTCAGTGGCTGTCGCTGGCGTGGACAGCAGGCATTGCCTCTGCACCTGCGGGTAGAGCCA-TCCACAGTGGTGAACACGGTGCTGGGATTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTTGTGGAGGCCATGTGCCCACCTGTCCGGCTGCCCTTACCAG GCGGTCCTGCACCTGG gtgtacatgtagtagtaattgtgtaaaggagtttgcaactatcatttcagGTGGCAGCAAGACTCAGTGGCTGTCACTGGCATGGTCAACAGGCATTGCCTCTACATCTACAGGTAAAACCATCCCACAGTGGTGACAATGGTGCTAGGATTGTTAAAGAAGCTGGAAGAGGAGGAGAGTGTCCTTGTGGAGCCAATTTGTCCGCCTGTCCGCCTGCCCTTGCCAGgtgggttgtaatactgtgtgttcgatttttccagGAGGTCCTCCACCTGG #### Catsper1_ID928_5 --> 1 - 1 Original Alignment cATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCC-ATCCTCACCCTCATGTTTACCTGCCTCt ccacttgcctcaacactaccttggctttaaccagacttttctttttgcagtATCTTGACTAGTGTCCATGAAGTAGCCGGAACCCTTAGTGGGTCATTACCATCAATCACAGCCCATCCTCACCCTCATGTTTACCTGCCTCtgtaagatgtacaacagaggttaggcaattattctgagtaggtcagatggt Alignment from CESAR cATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCC-ATCCTCACCCTCATGTTTACCTGCCTCt ccacttgcctcaacactaccttggctttaaccagacttttctttttgcagtATCTTGACTAGTGTCCATGAAGTAGCCGGAACCCTTAGTGGGTCATTACCATCAATCACAGCCCATCCTCACCCTCATGTTTACCTGCCTCtgtaagatgtacaacagaggttaggcaattattctgagtaggtcagatggt Alignment from Spaln_aa2Genome CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCC-ATCCTCACCCTCATGTTTACCTGCCTCT ccacttgcctcaacactaccttggctttaaccagacttttctttttgcagTATCTTGACTAGTGTCCATGAAGTAGCCGGAACCCTTAGTGGGTCATTACCATCAATCACAGCCcATCCTCACCCTCATGTTTACCTGCCTCTgtaagatgtacaacagaggttaggcaattattctgagtaggtcagatggt Alignment from Spaln_nt2Genome CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCC-ATCCTCACCCTCATGTTTACCTGCCTCT ccacttgcctcaacactaccttggctttaaccagacttttctttttgcagTATCTTGACTAGTGTCCATGAAGTAGCCGGAACCCTTAGTGGGTCATTACCATCAATCACAGCCCATCCTCACCCTCATGTTTACCTGCCTCTgtaagatgtacaacagaggttaggcaattattctgagtaggtcagatggt Alignment from Pairagon CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGG-CCATCCTCACCCTCATGTTTACCTGCCTCT ccacttgcctcaacactaccttggctttaaccagacttttctttttgcagTATCTTGACTAGTGTCCATGAAGTAGCCGGAACCCTTAGTGGGTCATTACCATCAATCACAGCCCATCCTCACCCTCATGTTTACCTGCCTCTgtaagatgtacaacagaggttaggcaattattctgagtaggtcagatggt Alignment from Exonerate_protein2genome CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCC-ATCCTCACCCTCATGTTTACCTGCCTCT ccacttgcctcaacactaccttggctttaaccagacttttctttttgcagTATCTTGACTAGTGTCCATGAAGTAGCCGGAACCCTTAGTGGGTCATTACCATCAATCACAGCCCATCCTCACCCTCATGTTTACCTGCCTCTgtaagatgtacaacagaggttaggcaattattctgagtaggtcagatggt Alignment from Exonerate_coding2genome CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACGGCC-ATCCTCACCCTCATGTTTACCTGCCTCT ccacttgcctcaacactaccttggctttaaccagacttttctttttgcagTATCTTGACTAGTGTCCATGAAGTAGCCGGAACCCTTAGTGGGTCATTACCATCAATCACAGCCCATCCTCACCCTCATGTTTACCTGCCTCTgtaagatgtacaacagaggttaggcaattattctgagtaggtcagatggt Alignment from GeneWise CATCCTGACCAGCCTCCACGAAGTGGCCGGGACTCTGAGTGGATCTTTACCATCCATCACG-GCCATCCTCACCCTCATGTTTACCTGCCTCT ccacttgcctcaacactaccttggctttaaccagacttttctttttgcagTATCTTGACTAGTGTCCATGAAGTAGCCGGAACCCTTAGTGGGTCATTACCATCAATCACAGCCCATCCTCACCCTCATGTTTACCTGCCTCTgtaagatgtacaacagaggttaggcaattattctgagtaggtcagatggt #### Catsper1_ID930_7 --> 2 - 2 Original Alignment CCCAAg gcGCCTGGTACATCATACCGATCCTCATGATT-TACATTGTCATCCAGTACTTCATCTTCCTCaa CCCAAggtaagttaacctaaggctccagcgctctctgtttgcccatttagctGCCTGGTACATCATACCAATCCTCATGATCCTACATTGTTATCCAATACTTTATCTTCCTCaagtatcacattgacctgttccaataaccacccactaagcacttagaggaca Alignment from CESAR CCCAAg gcGCCTGGTACATCATACCGATCCTCATGATT-TACATTGTCATCCAGTACTTCATCTTCCTCaa CCCAAggtaaggtaacctaaggctccagcgctctctgtttgcccatttagctGCCTGGTACATCATACCAATCCTCATGATCCTACATTGTTATCCAATACTTTATCTTCCTCaagtatcacattgacctgttccaataaccacccactaagcacttagaggaca Alignment from Spaln_aa2Genome CCCAAGGCGC CTGGTA CCCAAGGTAAgttaacctaaggctccagcgctctctgtttgcccatttagctgcctggtacatcataccaatcctcatgatcctacattgttatccaatactttatcttcctcaagtatcacattgacctgttccaataaccacccactaagcacttagAGGACA Alignment from Spaln_nt2Genome CCCAAG GCGCCTGGTACATCATACCGATCCTCATGATT-TACATTGTCATCCAGTACTTCATCTTCCTCAA CCCAAGgtaagttaacctaaggctccagcgctctctgtttgcccatttagCTGCCTGGTACATCATACCAATCCTCATGATCCTACATTGTTATCCAATACTTTATCTTCCTCAAgtatcacattgacctgttccaataaccacccactaagcacttagaggaca Alignment from Pairagon CCCAAG GCGCCTGGTACATCATACCGATCCTCATGAT-TTACATTGTCATCCAGTACTTCATCTTCCTCAA CCCAAGgtaagttaacctaaggctccagcgctctctgtttgcccatttagCTGCCTGGTACATCATACCAATCCTCATGATCCTACATTGTTATCCAATACTTTATCTTCCTCAAgtatcacattgacctgttccaataaccacccactaagcacttagaggaca Alignment from Exonerate_protein2genome CCCAAG GCGCCTGGTACATCATACCGATCCTCATGATT-TACATTGTCATCCAGTACTTCATCTTCCTCAA CCCAAGgtaagttaacctaaggctccagcgctctctgtttgcccatttagCTGCCTGGTACATCATACCAATCCTCATGATCCTACATTGTTATCCAATACTTTATCTTCCTCAAgtatcacattgacctgttccaataaccacccactaagcacttagaggaca Alignment from Exonerate_coding2genome CCCAAG GCGCCTGGTACATCATACCGATCCTCATGATT-TACATTGTCATCCAGTACTTCATCTTCCTCAA CCCAAGgtaagttaacctaaggctccagcgctctctgtttgcccatttagCTGCCTGGTACATCATACCAATCCTCATGATCCTACATTGTTATCCAATACTTTATCTTCCTCAAgtatcacattgacctgttccaataaccacccactaagcacttagaggaca Alignment from GeneWise CCCAAGGCGC CTGGTA CCCAAGGTAAgttaacctaaggctccagcgctctctgtttgcccatttagctgcctggtacatcataccaatcctcatgatcctacattgttatccaatactttatcttcctcaagtatcacattgacctgttccaataaccacccactaagcacttagAGGACA #### Catsper1_ID932_9 --> 0 - 1 Original Alignment CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCT-CTGACAGATCTCAACAAAGCAg ctacacctagggaccgaatcccagagtcctggagcacctgctgcccttagCAAGCTCCCCGAGTCCACGAAAAGTTGTTGGGTGACTCTCCTGACAGAACTCAATAAGGCAggtaagtattggacttcaatttaatctgccctccaattagtccctagagta Alignment from CESAR CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCT-CTGACAGATCTCAACAAAGCAg ctacacctagggaccgaatcccagagtcctggagcacctgctgcccttagCAAGCTCCCCGAGTCCACGAAAAGTTGTTGGGTGACTCTCCTGACAGAACTCAATAAGGCAggtaagtattggacttcaatttaatctgccctccaattagtccctagagta Alignment from Spaln_aa2Genome CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCT-CTGACAGATCTCAACAAAGCAG ctacacctagggaccgaatcccagagtcctggagcacctgctgcccttagCAAGCTCCCCGAGTCCACGAAAAGTTGTTGGGTGACTCTcCTGACAGAACTCAATAAGGCAGgtaagtattggacttcaatttaatctgccctccaattagtccctagagta Alignment from Spaln_nt2Genome CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCTC-TGACAGATCTCAACAAAGCAG ctacacctagggaccgaatcccagagtcctggagcacctgctgcccttagCAAGCTCCCCGAGTCCACGAAAAGTTGTTGGGTGACTCTCCTGACAGAACTCAATAAGGCAGgtaagtattggacttcaatttaatctgccctccaattagtccctagagta Alignment from Pairagon CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCT-CTGACAGATCTCAACAAAGCAG ctacacctagggaccgaatcccagagtcctggagcacctgctgcccttagCAAGCTCCCCGAGTCCACGAAAAGTTGTTGGGTGACTCTCCTGACAGAACTCAATAAGGCAGgtaagtattggacttcaatttaatctgccctccaattagtccctagagta Alignment from Exonerate_protein2genome CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCT-CTGACAGATCTCAACAAAGCAG ctacacctagggaccgaatcccagagtcctggagcacctgctgcccttagCAAGCTCCCCGAGTCCACGAAAAGTTGTTGGGTGACTCTCCTGACAGAACTCAATAAGGCAGgtaagtattggacttcaatttaatctgccctccaattagtccctagagta Alignment from Exonerate_coding2genome CAAGCTGCCCGGGTCCATGAGAAGTTGTTGGATGACTCT-CTGACAGATCTCAACAAAGCAG ctacacctagggaccgaatcccagagtcctggagcacctgctgcccttagCAAGCTCCCCGAGTCCACGAAAAGTTGTTGGGTGACTCTCCTGACAGAACTCAATAAGGCAGgtaagtattggacttcaatttaatctgccctccaattagtccctagagta Alignment from GeneWise ctacacctagggaccgaatcccagagtcctggagcacctgctgcccttagcaagctccccgagtccacgaaaagttgttgggtgactctcctgacagaactcaataaggcaggtaagtattggacttcaatttaatctgccctccaattagtccctagagta #### Ccdc88b_ID1824_25 --> 2 - 1 Original Alignment ggTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCA-CCCAGTACCCACAGCAAAg gttgtgatgacccctcctgatccatacaatcatggccttgtttcttacagggTCATCATCACCAGCACCCATGCACCAAATCGAGAGCTCTCTTTGCTTGGGAGATGAGACCCTAGCTGGTGGGCAGCGACGAAGTCTCAGTTCTCAGTTCCCTGTTGGTCGAAGTCCAGCATCATTCAGTCCAAGTGACACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCTTGGGGCACCTGAGTACCTATAGCAAAggtaagccatattttcctaagattggagttgccattgttttaagtggttgg Alignment from CESAR ggTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCC-AGTACCCACAGCAAAg gttgtgatgacccctcctgatccatacaatcatggccttgtttcttacagggTCATCATCACCAGCACCCATGCACCAAATCGAGAGCTCTCTTTGCTTGGGAGATGAGACCCTAGCTGGTGGGCAGCGACGAAGTCTCAGTTCTCAGTTCCCTGTTGGTCGAAGTCCAGCATCATTCAGTCCAAGTGACACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCTTGGGGCACCTGAGTACCTATAGCAAAggtaagccatattttcctaagattggagttgccattgttttaagtggttgg Alignment from Spaln_aa2Genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCC-AGTACCCACAGCAAAG gttgtgatgacccctcctgatccatacaatcatggccttgtttcttacagGGTCATCATCACCAGCACCCATGCACCAAATCGAGAGCTCTCTTTGCTTGGGAGATGAGACCCTAGCTGGTGGGCAGCGACGAAGTCTCAGTTCTCAGTTCCCTGTTGGTCGAAGTCCAGCATCATTCAGTCCAAGTGACACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCTTGGGGCACCTgAGTACCTATAGCAAAGgtaagccatattttcctaagattggagttgccattgttttaagtggttgg Alignment from Spaln_nt2Genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCC-AGTACCCACAGCAAAG gttgtgatgacccctcctgatccatacaatcatggccttgtttcttacagGGTCATCATCACCAGCACCCATGCACCAAATCGAGAGCTCTCTTTGCTTGGGAGATGAGACCCTAGCTGGTGGGCAGCGACGAAGTCTCAGTTCTCAGTTCCCTGTTGGTCGAAGTCCAGCATCATTCAGTCCAAGTGACACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCTTGGGGCACCTGAGTACCTATAGCAAAGgtaagccatattttcctaagattggagttgccattgttttaagtggttgg Alignment from Pairagon GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCC-AGTACCCACAGCAAAG gttgtgatgacccctcctgatccatacaatcatggccttgtttcttacagGGTCATCATCACCAGCACCCATGCACCAAATCGAGAGCTCTCTTTGCTTGGGAGATGAGACCCTAGCTGGTGGGCAGCGACGAAGTCTCAGTTCTCAGTTCCCTGTTGGTCGAAGTCCAGCATCATTCAGTCCAAGTGACACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCTTGGGGCACCTGAGTACCTATAGCAAAGgtaagccatattttcctaagattggagttgccattgttttaagtggttgg Alignment from Exonerate_protein2genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCC-AGTACCCACAGCAAAG gttgtgatgacccctcctgatccatacaatcatggccttgtttcttacagGGTCATCATCACCAGCACCCATGCACCAAATCGAGAGCTCTCTTTGCTTGGGAGATGAGACCCTAGCTGGTGGGCAGCGACGAAGTCTCAGTTCTCAGTTCCCTGTTGGTCGAAGTCCAGCATCATTCAGTCCAAGTGACACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCTTGGGGCACCTGAGTACCTATAGCAAAGgtaagccatattttcctaagattggagttgccattgttttaagtggttgg Alignment from Exonerate_coding2genome GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCC-AGTACCCACAGCAAAG gttgtgatgacccctcctgatccatacaatcatggccttgtttcttacagGGTCATCATCACCAGCACCCATGCACCAAATCGAGAGCTCTCTTTGCTTGGGAGATGAGACCCTAGCTGGTGGGCAGCGACGAAGTCTCAGTTCTCAGTTCCCTGTTGGTCGAAGTCCAGCATCATTCAGTCCAAGTGACACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCTTGGGGCACCTGAGTACCTATAGCAAAGgtaagccatattttcctaagattggagttgccattgttttaagtggttgg Alignment from GeneWise GGTCCTCGTCACCAGCACCCATGCGCCGCGTCCAGAGCTCTCTCTGCTTGGGAGATGAGACCCTGGCAGGTGGGCAGCGGCGGAGACTCAGTTCCCGGTTCCCTGGGGGGCGAAGCTCTGCGTCATTTAGTCCAGGGGACACCCCAAGGCAACGGTTCAGACAGCGAAGACCCGGCCCCCTGGGGGCACCC-AGTACCCACAGCAAAG gttgtgatgacccctcctgatccatacaatcatggccttgtttcttacagGGTCATCATCACCAGCACCCATGCACCAAATCGAGAGCTCTCTTTGCTTGGGAGATGAGACCCTAGCTGGTGGGCAGCGACGAAGTCTCAGTTCTCAGTTCCCTGTTGGTCGAAGTCCAGCATCATTCAGTCCAAGTGACACATCACGGCAATGGTTCAAACAGCAAAGGCCAGGCCCCCTTGGGGCACCTGAGTACCTATAGCAAAGgtaagccatattttcctaagattggagttgccattgttttaagtggttgg #### Ccdc88b_ID1826_23 --> 1 - 2 Original Alignment ct gGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATC-ATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCaa ctgtgagtacacttagggtcaggttaagcctggccttctccttgccccaggGACCAACTCAATGGCTTGCGCCAGCAGAAACAGAAGCTGGTGGAT---ATCCATGGACCAGTACCGCGTAGTACAGCCTGGGCCGCTACCCCATACTaagttggttagtaccttatggatcctgttagtatttcgccctgtcccacggc Alignment from CESAR ct gGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATC-ATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCaa ctgtgagaacacttagggtcaggttaagcctggccttctccttgccccaggGACCAACTCAATGGCTTGCGCCAGCAGAAACAGAAGCTGGTGGAT---ATCCATGGACCAGTACCGCGTAGTACAGCCTGGGCCGCTACCCCATACTaagttggttagtaccttatggatcctgttagtatttcgccctgtcccacggc Alignment from Spaln_aa2Genome CT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA CTgtgagtacacttagggtcaggttaagcctggccttctccttgccccagGGACCAACTCAATGGCTTGCGCCAGCAGAAACAGAAGCTGGTGGATA--TCCATGGACCAGTACCGCGTAGTACAGCCTGGGCCGCTACCCCATACTAAgttggttagtaccttatggatcctgttagtatttcgccctgtcccacggc Alignment from Spaln_nt2Genome CT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA CTgtgagtacacttagggtcaggttaagcctggccttctccttgccccagGGACCAACTCAATGGCTTGCGCCAGCAGAAACAGAAGCTGGTG--GATATCCATGGACCAGTACCGCGTAGTACAGCCTGGGCCGCTACCCCATACTAAgttggttagtaccttatggatcctgttagtatttcgccctgtcccacggc Alignment from Pairagon CT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA CTgtgagtacacttagggtcaggttaagcctggccttctccttgccccagGGACCAACTCAATGGCTTGCGCCAGCAGAAACAGAAGCTGGTG--GATATCCATGGACCAGTACCGCGTAGTACAGCCTGGGCCGCTACCCCATACTAAgttggttagtaccttatggatcctgttagtatttcgccctgtcccacggc Alignment from Exonerate_protein2genome CT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATC-ATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA CTgtgagtacacttagggtcaggttaagcctggccttctccttgccccagGGACCAACTCAATGGCTTGCGCCAGCAGAAACAGAAGCTGGTGGAT---ATCCATGGACCAGTACCGCGTAGTACAGCCTGGGCCGCTACCCCATACTAAgttggttagtaccttatggatcctgttagtatttcgccctgtcccacggc Alignment from Exonerate_coding2genome CT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATC-ATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA CTgtgagtacacttagggtcaggttaagcctggccttctccttgccccagGGACCAACTCAATGGCTTGCGCCAGCAGAAACAGAAGCTGGTGGAT---ATCCATGGACCAGTACCGCGTAGTACAGCCTGGGCCGCTACCCCATACTAAgttggttagtaccttatggatcctgttagtatttcgccctgtcccacggc Alignment from GeneWise CT GGACCAGCTTAATGCCTTGCGCCGGGAGAAACAGAAGCTGGTGGAGAAAATCATGGACCAGTACCGTGTGCTAGAACCTGGGCCCCTACCCCGTACCAA CTgtgagtacacttagggtcaggttaagcctggccttctccttgccccagGGACCAACTCAATGGCTTGCGCCAGCAGAAACAGAAGCTGGTGGATA--TCCATGGACCAGTACCGCGTAGTACAGCCTGGGCCGCTACCCCATACTAAgttggttagtaccttatggatcctgttagtatttcgccctgtcccacggc #### Ccdc88b_ID1827_22 --> 0 - 2 Original Alignment CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAG-GCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACct gG ctggacagtctgaggtctggtgttcaaccttcaagaacaatctcttacagCTTTTAACACAGCTCCGTACGGTACAAAAGGAGGAGAACAGGCAGCTTTTAGCAGAGGTGAAGCGCTTTAAGTCGAACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGAGT---GACCCTCTGCACCGTGAGCAGCCAGAGTACctgtgagaacacttagggtcaggttaagacttgtttctcatgccttacaggG Alignment from CESAR CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAG-GCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACct gG ctggacagtctgaggtctggtgttcaaccttcaagaacaatctcttacagCTTTTAACACAGCTCCGTACGGTACAAAAGGAGGAGAACAGGCAGCTTTTAGCAGAGGTGAAGCGCTTTAAGTCGAACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGAGT---GACCCTCTGCACCGTGAGCAGCCAGAGTACctgtgagaacacttagggtcaggttaagcctggccttctccttgccccaggG Alignment from Spaln_aa2Genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAG-GCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GG ctggacagtctgaggtctggtgttcaaccttcaagaacaatctcttacagCTTTTAACACAGCTCCGTACGGTACAAAAGGAGGAGAACAGGCAGCTTTTAGCAGAGGTGAAGcGCTTTAAGTCGAACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGAGT---GACCCTCTGCACCGTGAGCAGCCAGAGTACCTgtgagaacacttagggtcaggttaagacttgtttctcatgccttacagGG Alignment from Spaln_nt2Genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAG-GCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GG ctggacagtctgaggtctggtgttcaaccttcaagaacaatctcttacagCTTTTAACACAGCTCCGTACGGTACAAAAGGAGGAGAACAGGCAGCTTTTAGCAGAGGTGAAGCGCTTTAAGTCGAACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGA---GTGACCCTCTGCACCGTGAGCAGCCAGAGTACCTgtgagaacacttagggtcaggttaagacttgtttctcatgccttacagGG Alignment from Pairagon CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAGGCCCTGAGCCGGGAG----------------AACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GG ctggacagtctgaggtctggtgttcaaccttcaagaacaatctcttacagCTTTTAACACAGCTCCGTACGGTACAAAAGGAGGAGAACAGGCAGCTTTTAGCAGAGGT---------------GAAGCGCTTTAAGTCGAACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGA---GTGACCCTCTGCACCGTGAGCAGCCAGAGTACCTgtgagaacacttagggtcaggttaagacttgtttctcatgccttacagGG Alignment from Exonerate_protein2genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAG-GCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GG ctggacagtctgaggtctggtgttcaaccttcaagaacaatctcttacagCTTTTAACACAGCTCCGTACGGTACAAAAGGAGGAGAACAGGCAGCTTTTAGCAGAGGTGAAGCGCTTTAAGTCGAACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGAGT---GACCCTCTGCACCGTGAGCAGCCAGAGTACCTgtgagaacacttagggtcaggttaagacttgtttctcatgccttacagGG Alignment from Exonerate_coding2genome CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTCCAG-GCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GG ctggacagtctgaggtctggtgttcaaccttcaagaacaatctcttacagCTTTTAACACAGCTCCGTACGGTACAAAAGGAGGAGAACAGGCAGCTTTTAGCAGAGGTGAAGCGCTTTAAGTCGAACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGAGT---GACCCTCTGCACCGTGAGCAGCCAGAGTACCTgtgagaacacttagggtcaggttaagacttgtttctcatgccttacagGG Alignment from GeneWise CTTCTGACCCAGCTTCGCAGCGCGCAGGAGGAGGAGAACAGGCAGCTGTTAGCCGAGGTC-CAGGCCCTGAGCCGGGAGAACAGGGAGCTGCTGGAGCGCAGCCTGGAGAGCCGCGACCATCTGCATCGAGAGCAGCGAGAGTACCT GG ctggacagtctgaggtctggtgttcaaccttcaagaacaatctcttacagCTTTTAACACAGCTCCGTACGGTACAAAAGGAGGAGAACAGGCAGCTTTTAGCAGAGGTGAAGCGCTTTAAGTCGAACAAACAGGGAGTTGCAGGAGCGTAGTTTGGAGAGT---GACCCTCTGCACCGTGAGCAGCCAGAGTACCTgtgagaacacttagggtcaggttaagacttgtttctcatgccttacagGG #### Ccdc88b_ID1828_21 --> 1 - 0 Original Alignment aGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACC-ACACAGTGTGAG ggtgacattctccatttcaatatttaaatgtcattatttttgttctgcagaGCCCAAATGTTACTGGCAGAGGTGTCACGAGGGTGTGGTGAGATCCAGGGAGAACGTGGGGAGCTGTGGGGCCGTCTGTCAAGACTGGAACTGGAGCGGGCACAACTTGAAATCCAGAGCCAGCAGCTGCGTGTGTGGGAGTCCAACCAACAATTGGACCTAAGTGCATGTCACCTGACACACTCAATGCGAAgtaaaatacaacagtgtgcatataaggcctcccacactaatggtctctgg Alignment from CESAR aGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACC-ACACAGTGTGAG ggtgacattctccatttcaatatttaaatgtcattatttttgttctgcagaGCCCAAATGTTACTGGCAGAGGTGTCACGAGGGTGTGGTGAGATCCAGGGAGAACGTGGGGAGCTGTGGGGCCGTCTGTCAAGACTGGAACTGGAGCGGGCACAACTTGAAATCCAGAGCCAGCAGCTGCGTGTGTGGGAGTCCAACCAACAATTGGACCTAAGTGCATGTCACCTGACACACTCAATGCGAAgtaaaatacaacagtgtgcatataaggcctcccacactaatggtctctgg Alignment from Spaln_aa2Genome AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACC-ACACAGTGTGAG ggtgacattctccatttcaatatttaaatgtcattatttttgttctgcagAGCCCAAATGTTACTGGCAGAGGTGTCACGAGGGTGTGGTGAGATCCAGGGAGAACGTGGGGAGCTGTGGGGCCGTCTGTCAAGACTGGAACTGGAGCGGGCACAACTTGAAATCCAGAGCCAGCAGCTGCGTGTGTGGGAGTCCAACCAACAATTGGACCTAAGTGCATGTCACCTGACAcACTCAATGCGAAgtaaaatacaacagtgtgcatataaggcctcccacactaatggtctctgg Alignment from Spaln_nt2Genome AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGAC-CACACAGTGTGAG ggtgacattctccatttcaatatttaaatgtcattatttttgttctgcagAGCCCAAATGTTACTGGCAGAGGTGTCACGAGGGTGTGGTGAGATCCAGGGAGAACGTGGGGAGCTGTGGGGCCGTCTGTCAAGACTGGAACTGGAGCGGGCACAACTTGAAATCCAGAGCCAGCAGCTGCGTGTGTGGGAGTCCAACCAACAATTGGACCTAAGTGCATGTCACCTGACACACTCAATGCGAAgtaaaatacaacagtgtgcatataaggcctcccacactaatggtctctgg Alignment from Pairagon AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGAC-CACACAGTGTGAG ggtgacattctccatttcaatatttaaatgtcattatttttgttctgcagAGCCCAAATGTTACTGGCAGAGGTGTCACGAGGGTGTGGTGAGATCCAGGGAGAACGTGGGGAGCTGTGGGGCCGTCTGTCAAGACTGGAACTGGAGCGGGCACAACTTGAAATCCAGAGCCAGCAGCTGCGTGTGTGGGAGTCCAACCAACAATTGGACCTAAGTGCATGTCACCTGACACACTCAATGCGAAgtaaaatacaacagtgtgcatataaggcctcccacactaatggtctctgg Alignment from Exonerate_protein2genome AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACC-ACACAGTGTGAG ggtgacattctccatttcaatatttaaatgtcattatttttgttctgcagAGCCCAAATGTTACTGGCAGAGGTGTCACGAGGGTGTGGTGAGATCCAGGGAGAACGTGGGGAGCTGTGGGGCCGTCTGTCAAGACTGGAACTGGAGCGGGCACAACTTGAAATCCAGAGCCAGCAGCTGCGTGTGTGGGAGTCCAACCAACAATTGGACCTAAGTGCATGTCACCTGACACACTCAATGCGAAgtaaaatacaacagtgtgcatataaggcctcccacactaatggtctctgg Alignment from Exonerate_coding2genome AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACC-ACACAGTGTGAG ggtgacattctccatttcaatatttaaatgtcattatttttgttctgcagAGCCCAAATGTTACTGGCAGAGGTGTCACGAGGGTGTGGTGAGATCCAGGGAGAACGTGGGGAGCTGTGGGGCCGTCTGTCAAGACTGGAACTGGAGCGGGCACAACTTGAAATCCAGAGCCAGCAGCTGCGTGTGTGGGAGTCCAACCAACAATTGGACCTAAGTGCATGTCACCTGACACACTCAATGCGAAgtaaaatacaacagtgtgcatataaggcctcccacactaatggtctctgg Alignment from GeneWise AGCTCAGATGCTACTGGCCGAGGTGTCCCGGGAGCGAGGGGAGCTCCAAGGTGAACGCGGGGAGCTGCGGAGCCGCCTGGCGAGGCTGGAGCTGGAGCGCGCACAACTTGAGATCCAGAGCCAGCAGCTGCGT------GAGTCCAACCAGCAGTTGGACCTGAGTGCCTGTCGTCTGACC-ACACAGTGTGAG ggtgacattctccatttcaatatttaaatgtcattatttttgttctgcagAGCCCAAATGTTACTGGCAGAGGTGTCACGAGGGTGTGGTGAGATCCAGGGAGAACGTGGGGAGCTGTGGGGCCGTCTGTCAAGACTGGAACTGGAGCGGGCACAACTTGAAATCCAGAGCCAGCAGCTGCGTGTGTGGGAGTCCAACCAACAATTGGACCTAAGTGCATGTCACCTGACACACTCAATGCGAAgtaaaatacaacagtgtgcatataaggcctcccacactaatggtctctgg #### Ccdc88b_ID1831_18 --> 0 - 0 Original Alignment AATGCCACACTGGTGGCTGAGAAGGCG-GCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG gaggtaatagggctcacaacattaacatgtgggttctctctctctgtcagAATGCCACATTGGTGGCAGAGAAAGCGCGCTCTCCAGGGGCAGTTGCAGCATCTTGAGGGACAGCTGGGGAGCCTACATGGCCGTGCACAGGAATTGCTTCTACAGAGTCAACGGGCTCAAGAGCACAGTAGTTGCCTGCAGgtaagtatgggctgtggtgtgtacacttcttctgctgaccaacaacaatc Alignment from CESAR AATGCCACACTGGTGGCTGAGAAGGCG-GCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG gaggtaatagggctcacaacattaacatgtgggttctctctctctgtcagAATGCCACATTGGTGGCAGAGAAAGCGCGCTCTCCAGGGGCAGTTGCAGCATCTTGAGGGACAGCTGGGGAGCCTACATGGCCGTGCACAGGAATTGCTTCTACAGAGTCAACGGGCTCAAGAGCACAGTAGTTGCCTGCAGgtaagtatgggctgtggtgtgtacacttcttctgctgaccaacaacaatc Alignment from Spaln_aa2Genome AATGCCACACTGGTGGCTGAGAAGGCG-GCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG gaggtaatagggctcacaacattaacatgtgggttctctctctctgtcagAATGCCACATTGGTGGCAGAGAAAGCGcGCTCTCCAGGGGCAGTTGCAGCATCTTGAGGGACAGCTGGGGAGCCTACATGGCCGTGCACAGGAATTGCTTCTACAGAGTCAACGGGCTCAAGAGCACAGTAGTTGCCTGCAGgtaagtatgggctgtggtgtgtacacttcttctgctgaccaacaacaatc Alignment from Spaln_nt2Genome AATGCCACACTGGTGGCTGAGAAGGCG-GCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG gaggtaatagggctcacaacattaacatgtgggttctctctctctgtcagAATGCCACATTGGTGGCAGAGAAAGCGCGCTCTCCAGGGGCAGTTGCAGCATCTTGAGGGACAGCTGGGGAGCCTACATGGCCGTGCACAGGAATTGCTTCTACAGAGTCAACGGGCTCAAGAGCACAGTAGTTGCCTGCAGgtaagtatgggctgtggtgtgtacacttcttctgctgaccaacaacaatc Alignment from Pairagon AATGCCACACTGGTGGCTGAGAAGGCG-GCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG gaggtaatagggctcacaacattaacatgtgggttctctctctctgtcagAATGCCACATTGGTGGCAGAGAAAGCGCGCTCTCCAGGGGCAGTTGCAGCATCTTGAGGGACAGCTGGGGAGCCTACATGGCCGTGCACAGGAATTGCTTCTACAGAGTCAACGGGCTCAAGAGCACAGTAGTTGCCTGCAGgtaagtatgggctgtggtgtgtacacttcttctgctgaccaacaacaatc Alignment from Exonerate_protein2genome AATGCCACACTGGTGGCTGAGAAGGCG-GCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG gaggtaatagggctcacaacattaacatgtgggttctctctctctgtcagAATGCCACATTGGTGGCAGAGAAAGCGCGCTCTCCAGGGGCAGTTGCAGCATCTTGAGGGACAGCTGGGGAGCCTACATGGCCGTGCACAGGAATTGCTTCTACAGAGTCAACGGGCTCAAGAGCACAGTAGTTGCCTGCAGgtaagtatgggctgtggtgtgtacacttcttctgctgaccaacaacaatc Alignment from Exonerate_coding2genome AATGCCACACTGGTGGCTGAGAAGGCG-GCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG gaggtaatagggctcacaacattaacatgtgggttctctctctctgtcagAATGCCACATTGGTGGCAGAGAAAGCGCGCTCTCCAGGGGCAGTTGCAGCATCTTGAGGGACAGCTGGGGAGCCTACATGGCCGTGCACAGGAATTGCTTCTACAGAGTCAACGGGCTCAAGAGCACAGTAGTTGCCTGCAGgtaagtatgggctgtggtgtgtacacttcttctgctgaccaacaacaatc Alignment from GeneWise --------------------------------------------------AATGCCACACTGGTGGCTGAGAAGGCG-GCTCTGCAGGGGCAGCTGCAGCACCTGGAGGGGCAGCTGGGGAGCCTGCAGGGCCGTGCACAGGAGCTCCTGCTACAGAGTCAGCGGGCTCAGGAGCACAGCAGTCGCCTGCAG GAGGTAATAGGGCTCACAACATTAACATGTGGGTTCTCTCTCTCTGTCAGAATGCCACATTGGTGGCAGAGAAAGCGCGCTCTCCAGGGGCAGTTGCAGCATCTTGAGGGACAGCTGGGGAGCCTACATGGCCGTGCACAGGAATTGCTTCTACAGAGTCAACGGGCTCAAGAGCACAGTAGTTGCCTGCAGgtaagtatgggctgtggtgtgtacacttcttctgctgaccaacaacaatc #### Ccdc88b_ID1832_17 --> 0 - 0 Original Alignment CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGA---GCTGGGCCTCGGACTGTGGAGACC-CAGAATGGACGGCTCATCGAAGTGGAGCGAAAT ggattgatgtggagtacaactacctgttcattttcctgttttatttttagCTGCATCAGTGCCCGGTG---CTT---GAAGGGGCACGGCGAGATGGCCCTTGGGCTGTGGAGACACCAGAACGGGCGGCTCATTGTAGTAGAGCAAAATgtgtgtaagaaggtgggggcttacccaagaggtaatagggctcacaacat Alignment from CESAR CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACC-CAGAATGGACGGCTCATCGAAGTGGAGCGAAAT ggattgatgtggagtacaactacctgttcattttcctgttttatttttagCTGCATCAGTGCCCGGTG---CTTGAAGGGGCACGGCGAGATGGCCCTTGGGCTGTGGAGACACCAGAACGGGCGGCTCATTGTAGTAGAGCAAAATgtgtgtaagaaggtgggggcttacccaagaggtaatagggctcacaacat Alignment from Spaln_aa2Genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACC-CAGAATGGACGGCTCATCGAAGTGGAGCGAAAT ggattgatgtggagtacaactacctgttcattttcctgttttatttttagCTGCATCAGTGCCCGGTG---CTTGAAGGGGCACGGCGAGATGGCCCTTGGGCTGTGGAGACAcCAGAACGGGCGGCTCATTGTAGTAGAGCAAAATgtgtgtaagaaggtgggggcttacccaagaggtaatagggctcacaacat Alignment from Spaln_nt2Genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGAC-CCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT ggattgatgtggagtacaactacctgttcattttcctgttttatttttagCTGCATCAGTGCCCGGTG---CTTGAAGGGGCACGGCGAGATGGCCCTTGGGCTGTGGAGACACCAGAACGGGCGGCTCATTGTAGTAGAGCAAAATgtgtgtaagaaggtgggggcttacccaagaggtaatagggctcacaacat Alignment from Pairagon CTGCGCCAGTACCCGGTGGACCTGGCAACT----GGGGC---GCGAGCTGGGCCTCGGACTGTGGAGAC-CCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT ggattgatgtggagtacaactacctgttcattttcctgttttatttttagCTGCATCAGTGCCCGGTG----------CTTGAAGGGGCACGGCGAGATGGCCCTTGGGCTGTGGAGACACCAGAACGGGCGGCTCATTGTAGTAGAGCAAAATgtgtgtaagaaggtgggggcttacccaagaggtaatagggctcacaacat Alignment from Exonerate_protein2genome CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAGACC-CAGAATGGACGGCTCATCGAAGTGGAGCGAAAT ggattgatgtggagtacaactacctgttcattttcctgttttatttttagCTGCATCAGTGCCCGGTG---CTTGAAGGGGCACGGCGAGATGGCCCTTGGGCTGTGGAGACACCAGAACGGGCGGCTCATTGTAGTAGAGCAAAATgtgtgtaagaaggtgggggcttacccaagaggtaatagggctcacaacat Alignment from Exonerate_coding2genome ggattgatgtggagtacaactacctgttcattttcctgttttatttttagctgcatcagtgcccggtgcttgaaggggcacggcgagatggcccttgggctgtggagacaccagaacgggcggctcattgtagtagagcaaaatgtgtgtaagaaggtgggggcttacccaagaggtaatagggctcacaacat Alignment from GeneWise CTGCGCCAGTACCCGGTGGACCTGGCAACTGGGGCGCGAGCTGGGCCTCGGACTGTGGAG-ACCCAGAATGGACGGCTCATCGAAGTGGAGCGAAAT ggattgatgtggagtacaactacctgttcattttcctgttttatttttagCTGCATCAGTGCCCGGTG---CTTGAAGGGGCACGGCGAGATGGCCCTTGGGCTGTGGAGACACCAGAACGGGCGGCTCATTGTAGTAGAGCAAAATgtgtgtaagaaggtgggggcttacccaagaggtaatagggctcacaacat #### Ccdc88b_ID1836_13 --> 2 - 0 Original Alignment ccTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAG-AACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtgggggaacatgaacagacagaatagtgcaatgcttgtattttagcgTCCCTTCCTGGGCCAGCACCTTCATTGCAAGATGAGGTGAGGAAAGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAACAATCGGGAGCTTCGAGGTCAA---CATATG------GCACAGCTTGGCAGCCAGgtaagttcctctgctggtattcttgttccttgtaagtcctgtttgcaaca Alignment from CESAR ccTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAG-AACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtgggggaacatgaacagacagaatagtgcaatgcttgtattttagcgTCCCTTCCTGGGCCAGCACCTTCATTGCAAGATGAGGTGAGGAAAGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAACAATCGGGAGCTTCGAGGTCAA---CATATG------GCACAGCTTGGCAGCCAGgtaagttcctctgctggtattcttgttccttgtaagtcctgtttgcaaca Alignment from Spaln_aa2Genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAG-AACCGGGAGCTTCGAGGCCAACTACAG ttgagtgggggaacatgaacagacagaatagtgcaatgcttgtattttagCGTCCCTTCCTGGGCCAGCACCTTCATTGCAAGATGAGGTGAGGAAAGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAAcAATCGGGAGCTTCGAGGTCAACATATGgcacagcttggcagccaggtaagttcctctgctggtattcttgttccttgtaagtcctgtttgcaaca Alignment from Spaln_nt2Genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAG-AACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtgggggaacatgaacagacagaatagtgcaatgcttgtattttagCGTCCCTTCCTGGGCCAGCACCTTCATTGCAAGATGAGGTGAGGAAAGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAACAATCGGGAGCTTCGAGGTCA---ACATAT------GGCACAGCTTGGCAGCCAGgtaagttcctctgctggtattcttgttccttgtaagtcctgtttgcaaca Alignment from Pairagon CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAG-AACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtgggggaacatgaacagacagaatagtgcaatgcttgtattttagCGTCCCTTCCTGGGCCAGCACCTTCATTGCAAGATGAGGTGAGGAAAGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAACAATCGGGAGCTTCGAGGTCAA---------CATATGGCACAGCTTGGCAGCCAGgtaagttcctctgctggtattcttgttccttgtaagtcctgtttgcaaca Alignment from Exonerate_protein2genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAG-AACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtgggggaacatgaacagacagaatagtgcaatgcttgtattttagCGTCCCTTCCTGGGCCAGCACCTTCATTGCAAGATGAGGTGAGGAAAGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAACAATCGGGAGCTTCGAGGTCAA---------CATATGGCACAGCTTGGCAGCCAGgtaagttcctctgctggtattcttgttccttgtaagtcctgtttgcaaca Alignment from Exonerate_coding2genome CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGGGAG-AACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtgggggaacatgaacagacagaatagtgcaatgcttgtattttagCGTCCCTTCCTGGGCCAGCACCTTCATTGCAAGATGAGGTGAGGAAAGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAACAATCGGGAGCTTCGAGGTCAA---------CATATGGCACAGCTTGGCAGCCAGgtaagttcctctgctggtattcttgttccttgtaagtcctgtttgcaaca Alignment from GeneWise CCTCCCTACCCGGAGCAGCACCCTCACTGCAAGATGAGGTGAGGGAAGCAGAGGCTGGGAGGCTAAGGGCAGTGGAACGG-GAGAACCGGGAGCTTCGAGGCCAACTACAGATGCTTCAGGCACAGCTTGGCAGCCAG ttgagtgggggaacatgaacagacagaatagtgcaatgcttgtattttagCGTCCCTTCCTGGGCCAGCACCTTCATTGCAAGATGAGGTGAGGAAAGCAGAGGGTGGCAGACTTAGGGCAGTGGATCGGGAACAATCGGGAGCTTCGAGGTCAACATATG---------GCACAGCTTGGCAGCCAGgtaagttcctctgctggtattcttgttccttgtaagtcctgtttgcaaca #### Ccdc88b_ID1837_12 --> 0 - 1 Original Alignment GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAG-AGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGg ggttgggccagtttaatgaacaggacacttcgtttttttttttctttcagGACCTGGACTCACTGCGGCACCAGTTGGAGCAGCTAGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTGCAGCAGGAGTTTGGAGCCACCTCCAGGTTCCCCTGGGGAGggtaagccaggtcttgtgtaacagacaggatctgggaaggaaggcaaccct Alignment from CESAR GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAG-AGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGg ggttgggccagtttaatgaacaggacacttcgtttttttttttctttcagGACCTGGACTCACTGCGGCACCAGTTGGAGCAGCTAGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTGCAGCAGGAGTTTGGAGCCACCTCCAGGTTCCCCTGGGGAGggtaagccaggtcttgtgtaacagacaggatctgggaaggaaggcaaccct Alignment from Spaln_aa2Genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAG-AGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttgggccagtttaatgaacaggacacttcgtttttttttttctttcagGACCTGGACTCACTGCGGCACCAGTTGGAGCAGCTAGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTGCAGcAGGAGTTTGGAGCCACCTCCAGGTTCCCCTGGGGAGGgtaagccaggtcttgtgtaacagacaggatctgggaaggaaggcaaccct Alignment from Spaln_nt2Genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAG-AGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttgggccagtttaatgaacaggacacttcgtttttttttttctttcagGACCTGGACTCACTGCGGCACCAGTTGGAGCAGCTAGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTGCAGCAGGAGTTTGGAGCCACCTCCAGGTTCCCCTGGGGAGGgtaagccaggtcttgtgtaacagacaggatctgggaaggaaggcaaccct Alignment from Pairagon GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAG-AGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttgggccagtttaatgaacaggacacttcgtttttttttttctttcagGACCTGGACTCACTGCGGCACCAGTTGGAGCAGCTAGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTGCAGCAGGAGTTTGGAGCCACCTCCAGGTTCCCCTGGGGAGGgtaagccaggtcttgtgtaacagacaggatctgggaaggaaggcaaccct Alignment from Exonerate_protein2genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAG-AGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttgggccagtttaatgaacaggacacttcgtttttttttttctttcagGACCTGGACTCACTGCGGCACCAGTTGGAGCAGCTAGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTGCAGCAGGAGTTTGGAGCCACCTCCAGGTTCCCCTGGGGAGGgtaagccaggtcttgtgtaacagacaggatctgggaaggaaggcaaccct Alignment from Exonerate_coding2genome GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTTCAG-AGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttgggccagtttaatgaacaggacacttcgtttttttttttctttcagGACCTGGACTCACTGCGGCACCAGTTGGAGCAGCTAGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTGCAGCAGGAGTTTGGAGCCACCTCCAGGTTCCCCTGGGGAGGgtaagccaggtcttgtgtaacagacaggatctgggaaggaaggcaaccct Alignment from GeneWise GACCTGGACTCTCTGCGGCATCAGCTGGAGCAGCTGGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTT-CAGAGGAGTCTGGAGCCACCCCCAGGCTCCCCTGGGGAGG ggttgggccagtttaatgaacaggacacttcgtttttttttttctttcagGACCTGGACTCACTGCGGCACCAGTTGGAGCAGCTAGTGGAAGAGAATGTGGAGCTGGAGCTGGAACTGCAGCAGGAGTTTGGAGCCACCTCCAGGTTCCCCTGGGGAGGgtaagccaggtcttgtgtaacagacaggatctgggaaggaaggcaaccct #### Ccdc88b_ID1839_10 --> 0 - 0 Original Alignment ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGG-CGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cttcacccctttgtcccctaactcactggtgtctgctccgcccgctgcagACTCAGGCACTCTCTGCCCAAGCAAAGTGCACCGAACTCTGCCGTGAAGAAGCAGAGGCATTAAAA---GAGGCAGGTCACCTGCCCCGCCTGCAGGAAGATCTTCGGCCGATGTCGTGAGAAGCTTCAGGCAGCAGAAGTCTTCAAGGGTCATTTGGAGgtaagttgggccacacgagagccagagacaaactattgggtaatgtcgct Alignment from CESAR ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGG-CGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cttcacccctttgtcccctaactcactggtgtctgctccgcccgctgcagACTCAGGCACTCTCTGCCCAAGCAAAGTGCACCGAACTCTGCCGTGAAGAAGCAGAGGCATTAAAAGAG---GCAGGTCACCTGCCCCGCCTGCAGGAAGATCTTCGGCCGATGTCGTGAGAAGCTTCAGGCAGCAGAAGTCTTCAAGGGTCATTTGGAGgtaagttgggccacacgagagccagagacaaactattgggtaatgtcgct Alignment from Spaln_aa2Genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGG-CGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cttcacccctttgtcccctaactcactggtgtctgctccgcccgctgcagACTCAGGCACTCTCTGCCCAAGCAAAGTGCACCGAACTCTGCCGTGAAGAAGCAGAGGCATTAAAAGAG---GCAGGTCACCTGCCCCGCCTGCAGGAAGATCTTCGGcCGATGTCGTGAGAAGCTTCAGGCAGCAGAAGTCTTCAAGGGTCATTTGGAGgtaagttgggccacacgagagccagagacaaactattgggtaatgtcgct Alignment from Spaln_nt2Genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGGC-GCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cttcacccctttgtcccctaactcactggtgtctgctccgcccgctgcagACTCAGGCACTCTCTGCCCAAGCAAAGTGCACCGAACTCTGCCGTGAAGAAGCAGAGGCATTAAAAGA---GGCAGGTCACCTGCCCCGCCTGCAGGAAGATCTTCGGCCGATGTCGTGAGAAGCTTCAGGCAGCAGAAGTCTTCAAGGGTCATTTGGAGgtaagttgggccacacgagagccagagacaaactattgggtaatgtcgct Alignment from Pairagon ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGG-CGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cttcacccctttgtcccctaactcactggtgtctgctccgcccgctgcagACTCAGGCACTCTCTGCCCAAGCAAAGTGCACCGAACTCTGCCGTGAAGAAGCAGAGGCATTAAAAGA---GGCAGGTCACCTGCCCCGCCTGCAGGAAGATCTTCGGCCGATGTCGTGAGAAGCTTCAGGCAGCAGAAGTCTTCAAGGGTCATTTGGAGgtaagttgggccacacgagagccagagacaaactattgggtaatgtcgct Alignment from Exonerate_protein2genome ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGG-CGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cttcacccctttgtcccctaactcactggtgtctgctccgcccgctgcagACTCAGGCACTCTCTGCCCAAGCAAAGTGCACCGAACTCTGCCGTGAAGAAGCAGAGGCATTAAAAGAG---GCAGGTCACCTGCCCCGCCTGCAGGAAGATCTTCGGCCGATGTCGTGAGAAGCTTCAGGCAGCAGAAGTCTTCAAGGGTCATTTGGAGgtaagttgggccacacgagagccagagacaaactattgggtaatgtcgct Alignment from Exonerate_coding2genome GAGACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGG-CGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cttcacccctttgtcccctaactcactggtgtctgctccgcccgctgCAGACTCAGGCACTCTCTGCCCAAGCAAAGTGCACCGAACTCTGCCGTGAAGAAGCAGAGGCATTAAAAGAG---GCAGGTCACCTGCCCCGCCTGCAGGAAGATCTTCGGCCGATGTCGTGAGAAGCTTCAGGCAGCAGAAGTCTTCAAGGGTCATTTGGAGgtaagttgggccacacgagagccagagacaaactattgggtaatgtcgct Alignment from GeneWise ACTCAGGCGCTGTCCGCACAAGCCAAGCGCGCAGAGCTCTACCGCGAGGAGGCAGAGGCACTGCGGGAGCGGGCCGGCCGCCTGCCACGCCTGCAGGAAGAACTGCGG-CGCTGTCGCGAGAAGCTTCAAGCTGCAGAGGTCTTCAAGGGTCAGCTGGAG cttcacccctttgtcccctaactcactggtgtctgctccgcccgctgcagACTCAGGCACTCTCTGCCCAAGCAAAGTGCACCGAACTCTGCCGTGAAGAAGCAGAGGCATTAAAAGAG---GCAGGTCACCTGCCCCGCCTGCAGGAAGATCTTCGGCCGATGTCGTGAGAAGCTTCAGGCAGCAGAAGTCTTCAAGGGTCATTTGGAGgtaagttgggccacacgagagccagagacaaactattgggtaatgtcgct #### Ccdc88b_ID1841_8 --> 0 - 2 Original Alignment CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCAC-CATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGgt ttagtgtgggagttagcatcatgtgtccacctctcttcctttggctgcagCGGTTGGCTGAACTGTTGCTTGAGAGGGAGCCAGACCACCTGCTGCTCCCTGAGGCTCCTGCCAATGCA------GAGGGTGTCTCCCACCCATTTAGCTCTGCAATTGACCAATGCTAAGGCCCAACTGAGACGCCTCAGGAGGGAGgtgtttgtggccaaaggcacacaaaggtgtaaatgaaatcctggtgggttct Alignment from CESAR CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCAC-CATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGgt ttagtgtgggagttagcatcatgtgtccacctctcttcctttggctgcagCGGTTGGCTGAACTGTTGCTTGAGAGGGAGCCAGACCACCTGCTGCTCCCTGAGGCTCCTGCCAAT------GCAGAGGGTGTCTCCCACCCATTTAGCTCTGCAATTGACCAATGCTAAGGCCCAACTGAGACGCCTCAGGAGGGAGgtgtttgtggccaaaggcacacaaaggtgtaaatgaaatcctggtgggttct Alignment from Spaln_aa2Genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCAC-CATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT ttagtgtgggagttagcatcatgtgtccacctctcttcctttggctgcagCGGTTGGCTGAACTGTTGCTTGAGAGGGAGCCAGACCACCTGCTGCTCCCTGAGGCTCCTGCCAAT------GCAGAGGGTGTCTCCCACcCATTTAGCTCTGCAATTGACCAATGCTAAGGCCCAACTGAGACGCCTCAGGAGGGAGGTgtttgtggccaaaggcacacaaaggtgtaaatgaaatcctggtgggttct Alignment from Spaln_nt2Genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCACC-ATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT ttagtgtgggagttagcatcatgtgtccacctctcttcctttggctgcagCGGTTGGCTGAACTGTTGCTTGAGAGGGAGCCAGACCACCTGCTGCTCCCTGAGGCTCCTGCCAA------TGCAGAGGGTGTCTCCCACCCATTTAGCTCTGCAATTGACCAATGCTAAGGCCCAACTGAGACGCCTCAGGAGGGAGGTgtttgtggccaaaggcacacaaaggtgtaaatgaaatcctggtgggttct Alignment from Pairagon CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCA-CCATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT ttagtgtgggagttagcatcatgtgtccacctctcttcctttggctgcagCGGTTGGCTGAACTGTTGCTTGAGAGGGAGCCAGACCACCTGCTGCTCCCTGAGGCTCCTGCCAA------TGCAGAGGGTGTCTCCCACCCATTTAGCTCTGCAATTGACCAATGCTAAGGCCCAACTGAGACGCCTCAGGAGGGAGGTgtttgtggccaaaggcacacaaaggtgtaaatgaaatcctggtgggttct Alignment from Exonerate_protein2genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCAC-CATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT ttagtgtgggagttagcatcatgtgtccacctctcttcctttggctgcagCGGTTGGCTGAACTGTTGCTTGAGAGGGAGCCAGACCACCTGCTGCTCCCTGAGGCTCCTGCCAAT------GCAGAGGGTGTCTCCCACCCATTTAGCTCTGCAATTGACCAATGCTAAGGCCCAACTGAGACGCCTCAGGAGGGAGGTgtttgtggccaaaggcacacaaaggtgtaaatgaaatcctggtgggttct Alignment from Exonerate_coding2genome CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCAC-CATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGTG---GAGGAGAAGGCTGAGCAACTGCTGGACTCCCAGGCCG ttagtgtgggagttagcatcatgtgtccacctctcttcctttggctgcagCGGTTGGCTGAACTGTTGCTTGAGAGGGAGCCAGACCACCTGCTGCTCCCTGAGGCTCCTGCCAAT------GCAGAGGGTGTCTCCCACCCATTTAGCTCTGCAATTGACCAATGCTAAGGCCCAACTGAGACGCCTCAGGAGGGAGGTGTTTGTGGCCAAAGGCACACAAAGGTGTAAATGAAATCCTGgtgggttct Alignment from GeneWise CGGTTGGCTGAACTGCTGCTAGAGCGGGAGCCAGCCCACTTGCTGCTGCCAGAGGCTCCTGCTAATGCGTCTGCGGAGGGTGTCTCGCAC-CATCTGGCTCTGCAGCTGACCAATGCCAAGGCCCAGCTGAGACGCCTGAGGCAGGAGGT ttagtgtgggagttagcatcatgtgtccacctctcttcctttggctgcagCGGTTGGCTGAACTGTTGCTTGAGAGGGAGCCAGACCACCTGCTGCTCCCTGAGGCTCCTGCCAATGCA------GAGGGTGTCTCCCACCCATTTAGCTCTGCAATTGACCAATGCTAAGGCCCAACTGAGACGCCTCAGGAGGGAGGTgtttgtggccaaaggcacacaaaggtgtaaatgaaatcctggtgggttct #### Ccdc88b_ID1844_5 --> 2 - 0 Original Alignment aaGAGGCAGTGGAC------------------------------------------------------GAGCTGGAAAGCATCCTTCGGCTG-TTGCTGGGGGCCTCAGTGCAG tatatcctcatcttgttctttttgctcacttggcggttttttcctttaagagGAGGCAGTGGATGAGCTAGAGAGCATCCTGTGGTTGTTATTGGGGGCTTCAATACAGGTGAAAAGGAAGCTTGAAAGCATTCTTAGGTTGCCTGTTAGGGGCTTCAGTACGGgtacagtggggaaaaagactggagttcagacagaaagtgggacccctatg Alignment from CESAR aaGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG tatatcctcatcttgttctttttgctcacttggcggttttttcctttaagagGAGGCAGTGGATGAGCTAGAGAGCATCCTGTGGTTGTTATTGGGGGCTTCAATACAGgtgaaaaggaagcttgaaagcattcttaggttgcctgttaggggcttcagtacgggtacagtggggaaaaagactggagttcagacagaaagtgggacccctatg Alignment from Spaln_aa2Genome AAGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG tatatcctcatcttgttctttttgctcacttggcggttttttcctttaagAGGAGGCAGTGGATGAGCTAGAGAGCATCCTGTGGTTGTTATTGGGGGCTTCAATACAGgtgaaaaggaagcttgaaagcattcttaggttgcctgttaggggcttcagtacgggtacagtggggaaaaagactggagttcagacagaaagtgggacccctatg Alignment from Spaln_nt2Genome AAGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG tatatcctcatcttgttctttttgctcacttggcggttttttcctttaagAGGAGGCAGTGGATGAGCTAGAGAGCATCCTGTGGTTGTTATTGGGGGCTTCAATACAGgtgaaaaggaagcttgaaagcattcttaggttgcctgttaggggcttcagtacgggtacagtggggaaaaagactggagttcagacagaaagtgggacccctatg Alignment from Pairagon AAGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG tatatcctcatcttgttctttttgctcacttggcggttttttcctttaagAGGAGGCAGTGGATGAGCTAGAGAGCATCCTGTGGTTGTTATTGGGGGCTTCAATACAGgtgaaaaggaagcttgaaagcattcttaggttgcctgttaggggcttcagtacgggtacagtggggaaaaagactggagttcagacagaaagtgggacccctatg Alignment from Exonerate_protein2genome AAGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG tatatcctcatcttgttctttttgctcacttggcggttttttcctttaagAGGAGGCAGTGGATGAGCTAGAGAGCATCCTGTGGTTGTTATTGGGGGCTTCAATACAGgtgaaaaggaagcttgaaagcattcttaggttgcctgttaggggcttcagtacgggtacagtggggaaaaagactggagttcagacagaaagtgggacccctatg Alignment from Exonerate_coding2genome AAGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG tatatcctcatcttgttctttttgctcacttggcggttttttcctttaagAGGAGGCAGTGGATGAGCTAGAGAGCATCCTGTGGTTGTTATTGGGGGCTTCAATACAGgtgaaaaggaagcttgaaagcattcttaggttgcctgttaggggcttcagtacgggtacagtggggaaaaagactggagttcagacagaaagtgggacccctatg Alignment from GeneWise AAGAGGCAGTGGACGAGCTGGAAAGCATCCTTCGGCTGTTGCTGGGGGCCTCAGTGCAG tatatcctcatcttgttctttttgctcacttggcggttttttcctttaagAGGAGGCAGTGGATGAGCTAGAGAGCATCCTGTGGTTGTTATTGGGGGCTTCAATACAGgtgaaaaggaagcttgaaagcattcttaggttgcctgttaggggcttcagtacgggtacagtggggaaaaagactggagttcagacagaaagtgggacccctatg #### Ccdc88b_ID1847_2 --> 0 - 2 Original Alignment GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGA-GCCTTACTCCTTCGGGTGCTGGGCATCat gcctggtattgtgcgcctgcctcccttctaatttattttattgttccaagGCTTTAGGTTTGGCTGGCCTTGTGGGGGAGGCAGAAAAGTCAGCAGGGGGAACTGAAGAGGACGAGGAGGAGGAGGAGGAAGAAGGAGCTCTTTGTACAGAAAAAAGATCCCTACGGTTGATTGACGGACGCCTTACTCCTTCGGGTTTTGGACATTatgtaggagatacagggaaatttagttatggatgttggccatgaatggtagg Alignment from CESAR GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGA-GCCTTACTCCTTCGGGTGCTGGGCATCat gcctggtattgtgcgcctgcctcccttctaatttattttattgttccaagGCTTTAGGTTTGGCTGGCCTTGTGGGGGAGGCAGAAAAGTCAGCAGGGGGAACTGAAGAGGACGAGGAGGAGGAGGAGGAAGAAGGAGCTCTTTGTACAGAAAAAAGATCCCTACGGTTGATTGACGGACGCCTTACTCCTTCGGGTTTTGGACATTatgtaggagatacagggaaatttagttatggatgttggccatgaatggtagg Alignment from Spaln_aa2Genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGA-GCCTTACTCCTTCGGGTGCTGGGCATCAT gcctggtattgtgcgcctgcctcccttctaatttattttattgttccaagGCTTTAGGTTTGGCTGGCCTTGTGGGGGAGGCAGAAAAGTCAGCAGGGGGAACTGAAGAGGACGAGGAGGAGGAGGAGGAAGAAGGAGCTCTTTGTACAGAAAAAAGATCCCTACGGTTGATTGACGGAcGCCTTACTCCTTCGGGTTTTGGACATTATgtaggagatacagggaaatttagttatggatgttggccatgaatggtagg Alignment from Spaln_nt2Genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGA-GCCTTACTCCTTCGGGTGCTGGGCATCAT gcctggtattgtgcgcctgcctcccttctaatttattttattgttccaagGCTTTAGGTTTGGCTGGCCTTGTGGGGGAGGCAGAAAAGTCAGCAGGGGGAACTGAAGAGGACGAGGAGGAGGAGGAGGAAGAAGGAGCTCTTTGTACAGAAAAAAGATCCCTACGGTTGATTGACGGACGCCTTACTCCTTCGGGTTTTGGACATTATgtaggagatacagggaaatttagttatggatgttggccatgaatggtagg Alignment from Pairagon GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGA-GCCTTACTCCTTCGGGTGCTGGGCATCAT gcctggtattgtgcgcctgcctcccttctaatttattttattgttccaagGCTTTAGGTTTGGCTGGCCTTGTGGGGGAGGCAGAAAAGTCAGCAGGGGGAACTGAAGAGGACGAGGAGGAGGAGGAGGAAGAAGGAGCTCTTTGTACAGAAAAAAGATCCCTACGGTTGATTGACGGACGCCTTACTCCTTCGGGTTTTGGACATTATgtaggagatacagggaaatttagttatggatgttggccatgaatggtagg Alignment from Exonerate_protein2genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGA-GCCTTACTCCTTCGGGTGCTGGGCATCAT gcctggtattgtgcgcctgcctcccttctaatttattttattgttccaagGCTTTAGGTTTGGCTGGCCTTGTGGGGGAGGCAGAAAAGTCAGCAGGGGGAACTGAAGAGGACGAGGAGGAGGAGGAGGAAGAAGGAGCTCTTTGTACAGAAAAAAGATCCCTACGGTTGATTGACGGACGCCTTACTCCTTCGGGTTTTGGACATTATgtaggagatacagggaaatttagttatggatgttggccatgaatggtagg Alignment from Exonerate_coding2genome GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGA-GCCTTACTCCTTCGGGTGCTGGGCATCAT gcctggtattgtgcgcctgcctcccttctaatttattttattgttccaagGCTTTAGGTTTGGCTGGCCTTGTGGGGGAGGCAGAAAAGTCAGCAGGGGGAACTGAAGAGGACGAGGAGGAGGAGGAGGAAGAAGGAGCTCTTTGTACAGAAAAAAGATCCCTACGGTTGATTGACGGACGCCTTACTCCTTCGGGTTTTGGACATTATgtaggagatacagggaaatttagttatggatgttggccatgaatggtagg Alignment from GeneWise GCACTGGGACTGGCTGGGCTGGTGGGGGAGGCAGAAGAATCAGCGGGGGGAACAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGGGGCTCTTTGTACAGAGAAGAGATTCCTGCGGCTGATCGATGGA-GCCTTACTCCTTCGGGTGCTGGGCATCAT gcctggtattgtgcgcctgcctcccttctaatttattttattgttccaagGCTTTAGGTTTGGCTGGCCTTGTGGGGGAGGCAGAAAAGTCAGCAGGGGGAACTGAAGAGGACGAGGAGGAGGAGGAGGAAGAAGGAGCTCTTTGTACAGAAAAAAGATCCCTACGGTTGATTGACGGACGCCTTACTCCTTCGGGTTTTGGACATTATgtaggagatacagggaaatttagttatggatgttggccatgaatggtagg #### Ccnj_ID8043_4 --> 2 - 2 Original Alignment atTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTG-TCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGct acatggctaattaactgttccattgtagatacctgtttctggtctttcagatTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCCGCATGTGTGGCCTTTTCAAGGATTATACTTCGCCTGCTCTCCAACCTGGCCAACAAGACTACACTGTTTCACTGCCTATTCCTGGGCCTTCTTGGTGCAGTGTATGGAATGGTTATTGctgtaagaagagcctcataatcgaagtcagactgctggaggcagctatgcag Alignment from CESAR atTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTG-TCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGct acatggctaattaactgttccattgtagatacctgtttctggtctttcagatTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCCGCATGTGTGGCCTTTTCAAGGATTATACTTCGCCTGCTCTCCAACCTGGCCAACAAGACTACACTGTTTCACTGCCTATTCCTGGGCCTTCTTGGTGCAGTGTATGGAATGGTTATTGctgtaagaagagcctcataatcgaagtcagactgctggaggcagctatgcag Alignment from Spaln_aa2Genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTG-TCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT acatggctaattaactgttccattgtagatacctgtttctggtctttcagATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCCGCATGTGTGGCCTTTTCAAGGATTATACTTCGCCTGcTCTCCAACCTGGCCAACAAGACTACACTGTTTCACTGCCTATTCCTGGGCCTTCTTGGTGCAGTGTATGGAATGGTTATTGCTgtaagaagagcctcataatcgaagtcagactgctggaggcagctatgcag Alignment from Spaln_nt2Genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTG-TCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT acatggctaattaactgttccattgtagatacctgtttctggtctttcagATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCCGCATGTGTGGCCTTTTCAAGGATTATACTTCGCCTGCTCTCCAACCTGGCCAACAAGACTACACTGTTTCACTGCCTATTCCTGGGCCTTCTTGGTGCAGTGTATGGAATGGTTATTGCTgtaagaagagcctcataatcgaagtcagactgctggaggcagctatgcag Alignment from Pairagon ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTG-TCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT acatggctaattaactgttccattgtagatacctgtttctggtctttcagATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCCGCATGTGTGGCCTTTTCAAGGATTATACTTCGCCTGCTCTCCAACCTGGCCAACAAGACTACACTGTTTCACTGCCTATTCCTGGGCCTTCTTGGTGCAGTGTATGGAATGGTTATTGCTgtaagaagagcctcataatcgaagtcagactgctggaggcagctatgcag Alignment from Exonerate_protein2genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTG-TCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT acatggctaattaactgttccattgtagatacctgtttctggtctttcagATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCCGCATGTGTGGCCTTTTCAAGGATTATACTTCGCCTGCTCTCCAACCTGGCCAACAAGACTACACTGTTTCACTGCCTATTCCTGGGCCTTCTTGGTGCAGTGTATGGAATGGTTATTGCTgtaagaagagcctcataatcgaagtcagactgctggaggcagctatgcag Alignment from Exonerate_coding2genome ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTG-TCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT acatggctaattaactgttccattgtagatacctgtttctggtctttcagATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCCGCATGTGTGGCCTTTTCAAGGATTATACTTCGCCTGCTCTCCAACCTGGCCAACAAGACTACACTGTTTCACTGCCTATTCCTGGGCCTTCTTGGTGCAGTGTATGGAATGGTTATTGCTgtaagaagagcctcataatcgaagtcagactgctggaggcagctatgcag Alignment from GeneWise ATTATGCCTTTCTAAATTATGCACCTTCTTTAGTAGCTGCTGCGTGTGTGGCTTCTTCGAGGATTATCCTTCGTCTG-TCTCCAACGTGGCCCACGAGACTGCACCGTCTCACTGCCTACTCCTGGGACTTCTTGGTGCAGTGTATCGAACGGCTGTTGCT acatggctaattaactgttccattgtagatacctgtttctggtctttcagATTATGCATTTCTAAATTATGCACCCTCCTTAGTAGCTGCCGCATGTGTGGCCTTTTCAAGGATTATACTTCGCCTGCTCTCCAACCTGGCCAACAAGACTACACTGTTTCACTGCCTATTCCTGGGCCTTCTTGGTGCAGTGTATGGAATGGTTATTGCTgtaagaagagcctcataatcgaagtcagactgctggaggcagctatgcag #### Cdc42bpg_ID1573_3 --> 0 - 0 Original Alignment GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTG-AAGAGGGCTGAG ttggttctcctgtgagtccagtctcattagtttcttttaaaaccgtctagGTTATTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCAATGAACATGTTTCATAAGTGGGAAATGCTGCAAGAGGGCTGAGgtgaggtggcacaaaaatgcaaaatctagcctttttttatcttcattgtc Alignment from CESAR GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTG-AAGAGGGCTGAG ttggttctcctgtgagtccagtctcattagtttcttttaaaaccgtctagGTTATTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCAATGAACATGTTTCATAAGTGGGAAATGCTGCAAGAGGGCTGAGgtgaggtggcacaaaaatgcaaaatctagcctcagcccctcttaccttcc Alignment from Spaln_aa2Genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTG-AAGAGGGCTGAG ttggttctcctgtgagtccagtctcattagtttcttttaaaaccgtctagGTTATTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCAATGAACATGTTTCATAAGTGGGAAATGCTGcAAGAGGGCTGAGgtgaggtggcacaaaaatgcaaaatctagcctttttttatcttcattgtc Alignment from Spaln_nt2Genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTG-AAGAGGGCTGAG ttggttctcctgtgagtccagtctcattagtttcttttaaaaccgtctagGTTATTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCAATGAACATGTTTCATAAGTGGGAAATGCTGCAAGAGGGCTGAGgtgaggtggcacaaaaatgcaaaatctagcctttttttatcttcattgtc Alignment from Pairagon GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTG-AAGAGGGCTGAG ttggttctcctgtgagtccagtctcattagtttcttttaaaaccgtctagGTTATTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCAATGAACATGTTTCATAAGTGGGAAATGCTGCAAGAGGGCTGAGgtgaggtggcacaaaaatgcaaaatctagcctttttttatcttcattgtc Alignment from Exonerate_protein2genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTG-AAGAGGGCTGAG ttggttctcctgtgagtccagtctcattagtttcttttaaaaccgtctagGTTATTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCAATGAACATGTTTCATAAGTGGGAAATGCTGCAAGAGGGCTGAGgtgaggtggcacaaaaatgcaaaatctagcctttttttatcttcattgtc Alignment from Exonerate_coding2genome GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATGCTG-AAGAGGGCTGAG ttggttctcctgtgagtccagtctcattagtttcttttaaaaccgtctagGTTATTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCAATGAACATGTTTCATAAGTGGGAAATGCTGCAAGAGGGCTGAGgtgaggtggcacaaaaatgcaaaatctagcctttttttatcttcattgtc Alignment from GeneWise GTTGCCGTGGTGAGGCAGAGGGGCAGTGGCCAGATCTTTGCCATGAAGATGCTGCATAAGTGGGAGATG-CTGAAGAGGGCTGAG ttggttctcctgtgagtccagtctcattagtttcttttaaaaccgtctagGTTATTGTGGTGAGGCAGAGGGGAAGTGGCCAGATCTTTGCAATGAACATGTTTCATAAGTGGGAAATGCTGCAAGAGGGCTGAGgtgaggtggcacaaaaatgcaaaatctagcctttttttatcttcattgtc #### Cdc42bpg_ID1576_6 --> 1 - 0 Original Alignment gGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGC-CACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG gcacacacacatacttacaccaaagcaccatctccctttttcatttgcagaGATGTGAAGCCAGACAACATTCTACTGAGCATGAATGGGCCAGCTTTGCTTGGCTGACTTTGGCTCCTGCCTACGCCTCAACAACAATGCCAAGgtgagtaaaccacctagaaattcgtagacaagcataaagacatttagtta Alignment from CESAR gGATGTGAAGCCTGACAACATCCTGCTGGACATGAAT-GGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG gcacacacacatacttacaccaaagcaccatctccctttttcatttgcagaGATGTGAAGCCAGACAACATTCTACTGAGCATGAATGGGCCAGCTTTGCTTGGCTGACTTTGGCTCCTGCCTACGCCTCAACAACAATGCCAAGgtgagtaaaccacctagaaattcgtagacaagcataaagacatttagtta Alignment from Spaln_aa2Genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAAT-GGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG gcacacacacatacttacaccaaagcaccatctccctttttcatttgcagAGATGTGAAGCCAGACAACATTCTACTGAGCATGAATgGGCCAGCTTTGCTTGGCTGACTTTGGCTCCTGCCTACGCCTCAACAACAATGCCAAGgtgagtaaaccacctagaaattcgtagacaagcataaagacatttagtta Alignment from Spaln_nt2Genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGG-CCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG gcacacacacatacttacaccaaagcaccatctccctttttcatttgcagAGATGTGAAGCCAGACAACATTCTACTGAGCATGAATGGGCCAGCTTTGCTTGGCTGACTTTGGCTCCTGCCTACGCCTCAACAACAATGCCAAGgtgagtaaaccacctagaaattcgtagacaagcataaagacatttagtta Alignment from Pairagon GGATGTGAAGCCTGACAACATCCTGCTGGACATGAAT-GGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG gcacacacacatacttacaccaaagcaccatctccctttttcatttgcagAGATGTGAAGCCAGACAACATTCTACTGAGCATGAATGGGCCAGCTTTGCTTGGCTGACTTTGGCTCCTGCCTACGCCTCAACAACAATGCCAAGgtgagtaaaccacctagaaattcgtagacaagcataaagacatttagtta Alignment from Exonerate_protein2genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAAT-GGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG gcacacacacatacttacaccaaagcaccatctccctttttcatttgcagAGATGTGAAGCCAGACAACATTCTACTGAGCATGAATGGGCCAGCTTTGCTTGGCTGACTTTGGCTCCTGCCTACGCCTCAACAACAATGCCAAGgtgagtaaaccacctagaaattcgtagacaagcataaagacatttagtta Alignment from Exonerate_coding2genome GGATGTGAAGCCTGACAACATCCTGCTGGACATGAAT-GGCCACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG gcacacacacatacttacaccaaagcaccatctccctttttcatttgcagAGATGTGAAGCCAGACAACATTCTACTGAGCATGAATGGGCCAGCTTTGCTTGGCTGACTTTGGCTCCTGCCTACGCCTCAACAACAATGCCAAGgtgagtaaaccacctagaaattcgtagacaagcataaagacatttagtta Alignment from GeneWise GGATGTGAAGCCTGACAACATCCTGCTGGACATGAATGGC-CACATCCGCCTGGCAGACTTTGGCTCCTGCCTGCGTCTCAACAACAATGGCATG gcacacacacatacttacaccaaagcaccatctccctttttcatttgcagAGATGTGAAGCCAGACAACATTCTACTGAGCATGAATGGGCCAGCTTTGCTTGGCTGACTTTGGCTCCTGCCTACGCCTCAACAACAATGCCAAGgtgagtaaaccacctagaaattcgtagacaagcataaagacatttagtta #### Cdc42bpg_ID1577_7 --> 0 - 0 Original Alignment GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAG-TGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG agtggtgcctcctctgcctgcctccactgtgtgtctgctctgttttccagGTGGATTCATCAGTTGCCGTAGGAACTCCAGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTACGGACCACAACTGTGATTGGTGGTCACTGGGAGTCTGTGCCTATGAGCTGCTGTTTGGGGAAACACCCTTTTACGCTGAATCTCTGGTAGAGACTTACGGGAAGATCATGAACCATGAGgtcagtttgtagggctcagggaccctggtattgtggaggtcatctttatt Alignment from CESAR GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAG-TGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG agtggtgcctcctctgcctgcctccactgtgtgtctgctctgttttccagGTGGATTCATCAGTTGCCGTAGGAACTCCAGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTACGGACCACAACTGTGATTGGTGGTCACTGGGAGTCTGTGCCTATGAGCTGCTGTTTGGGGAAACACCCTTTTACGCTGAATCTCTGGTAGAGACTTACGGGAAGATCATGAACCATGAGgtcagtttgtagggctcagggaccctggtattgtggaggtcatctttatt Alignment from Spaln_aa2Genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAG-TGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG agtggtgcctcctctgcctgcctccactgtgtgtctgctctgttttccagGTGGATTCATCAGTTGCCGTAGGAACTCCAGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTACGGACCACAAcTGTGATTGGTGGTCACTGGGAGTCTGTGCCTATGAGCTGCTGTTTGGGGAAACACCCTTTTACGCTGAATCTCTGGTAGAGACTTACGGGAAGATCATGAACCATGAGgtcagtttgtagggctcagggaccctggtattgtggaggtcatctttatt Alignment from Spaln_nt2Genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAG-TGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG agtggtgcctcctctgcctgcctccactgtgtgtctgctctgttttccagGTGGATTCATCAGTTGCCGTAGGAACTCCAGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTACGGACCACAACTGTGATTGGTGGTCACTGGGAGTCTGTGCCTATGAGCTGCTGTTTGGGGAAACACCCTTTTACGCTGAATCTCTGGTAGAGACTTACGGGAAGATCATGAACCATGAGgtcagtttgtagggctcagggaccctggtattgtggaggtcatctttatt Alignment from Pairagon GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAG-TGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG agtggtgcctcctctgcctgcctccactgtgtgtctgctctgttttccagGTGGATTCATCAGTTGCCGTAGGAACTCCAGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTACGGACCACAACTGTGATTGGTGGTCACTGGGAGTCTGTGCCTATGAGCTGCTGTTTGGGGAAACACCCTTTTACGCTGAATCTCTGGTAGAGACTTACGGGAAGATCATGAACCATGAGgtcagtttgtagggctcagggaccctggtattgtggaggtcatctttatt Alignment from Exonerate_protein2genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAG-TGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG agtggtgcctcctctgcctgcctccactgtgtgtctgctctgttttccagGTGGATTCATCAGTTGCCGTAGGAACTCCAGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTACGGACCACAACTGTGATTGGTGGTCACTGGGAGTCTGTGCCTATGAGCTGCTGTTTGGGGAAACACCCTTTTACGCTGAATCTCTGGTAGAGACTTACGGGAAGATCATGAACCATGAGgtcagtttgtagggctcagggaccctggtattgtggaggtcatctttatt Alignment from Exonerate_coding2genome GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCACAG-TGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG agtggtgcctcctctgcctgcctccactgtgtgtctgctctgttttccagGTGGATTCATCAGTTGCCGTAGGAACTCCAGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTACGGACCACAACTGTGATTGGTGGTCACTGGGAGTCTGTGCCTATGAGCTGCTGTTTGGGGAAACACCCTTTTACGCTGAATCTCTGGTAGAGACTTACGGGAAGATCATGAACCATGAGgtcagtttgtagggctcagggaccctggtattgtggaggtcatctttatt Alignment from GeneWise GTGGATTCATCAGTCGCAGTTGGGACCCCGGACTACATCTCTCCTGAGATCCTACAGGCCATGGAGGAAGGCAAGGGCCACTACGGCCCA-CAGTGTGACTGGTGGTCACTGGGAGTCTGCGCCTATGAGCTGCTCTTTGGGGAAACACCCTTTTATGCAGAATCTCTGGTAGAAACCTACGGCAAGATCATGAACCACGAG agtggtgcctcctctgcctgcctccactgtgtgtctgctctgttttccagGTGGATTCATCAGTTGCCGTAGGAACTCCAGACTACATCTCTCCTGAGATCCTACAGGCTATGGAGGAAGGTAAGGGCCACTACGGACCACAACTGTGATTGGTGGTCACTGGGAGTCTGTGCCTATGAGCTGCTGTTTGGGGAAACACCCTTTTACGCTGAATCTCTGGTAGAGACTTACGGGAAGATCATGAACCATGAGgtcagtttgtagggctcagggaccctggtattgtggaggtcatctttatt #### Cdc42bpg_ID1581_11 --> 2 - 1 Original Alignment agCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGG-CTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAg tggttctgggtgctaaagtcgtgggagaatgctccatttattttatttagagCATCTGCATGGTCCACTACAACCACAGGAGCTTGTGCATCCTTCATAAAGAGGTTCAGGTTCTTCAGGAGAAACTGACAggtttgtctggtaagctattagagttggccaggttccttgccatgtcctag Alignment from CESAR agCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGG-CTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAg tggttctgggtgctaaagtcgtgggagaatgctccatttattttatttagagCATCTGCATGGTCCACTACAACCACAGGAGCTTGTGCATCCTTCATAAAGAGGTTCAGGTTCTTCAGGAGAAACTGACAggtttgtctggtaagctattagagttggccaggttccttgccatgtcctag Alignment from Spaln_aa2Genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGG-CTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG tggttctgggtgctaaagtcgtgggagaatgctccatttattttatttagAGCATCTGCATGGTCCACTACAACCACAGGAGCTTGTGCATcCTTCATAAAGAGGTTCAGGTTCTTCAGGAGAAACTGACAGgtttgtctggtaagctattagagttggccaggttccttgccatgtcctag Alignment from Spaln_nt2Genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGGC-TTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG tggttctgggtgctaaagtcgtgggagaatgctccatttattttatttagAGCATCTGCATGGTCCACTACAACCACAGGAGCTTGTGCATCCTTCATAAAGAGGTTCAGGTTCTTCAGGAGAAACTGACAGgtttgtctggtaagctattagagttggccaggttccttgccatgtcctag Alignment from Pairagon AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCG-GCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG tggttctgggtgctaaagtcgtgggagaatgctccatttattttatttagAGCATCTGCATGGTCCACTACAACCACAGGAGCTTGTGCATCCTTCATAAAGAGGTTCAGGTTCTTCAGGAGAAACTGACAGgtttgtctggtaagctattagagttggccaggttccttgccatgtcctag Alignment from Exonerate_protein2genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGG-CTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG tggttctgggtgctaaagtcgtgggagaatgctccatttattttatttagAGCATCTGCATGGTCCACTACAACCACAGGAGCTTGTGCATCCTTCATAAAGAGGTTCAGGTTCTTCAGGAGAAACTGACAGgtttgtctggtaagctattagagttggccaggttccttgccatgtcctag Alignment from Exonerate_coding2genome AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTGCGG-CTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG tggttctgggtgctaaagtcgtgggagaatgctccatttattttatttagAGCATCTGCATGGTCCACTACAACCACAGGAGCTTGTGCATCCTTCATAAAGAGGTTCAGGTTCTTCAGGAGAAACTGACAGgtttgtctggtaagctattagagttggccaggttccttgccatgtcctag Alignment from GeneWise AGCCCCTGCATGGCCCATTACAGCCCCAGGAGCTTGTG-CGGCTTCAGAAGGAAGTACAGGTTCTTCAGGAGAAACTGGCAG tggttctgggtgctaaagtcgtgggagaatgctccatttattttatttagAGCATCTGCATGGTCCACTACAACCACAGGAGCTTGTGCATCCTTCATAAAGAGGTTCAGGTTCTTCAGGAGAAACTGACAGgtttgtctggtaagctattagagttggccaggttccttgccatgtcctag #### Cdc42bpg_ID1582_12 --> 2 - 0 Original Alignment agACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGC-CTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG tgcttacagaggggggaattatcacagcgaaatgcttcctcatgctgcagagACCTTGAAGGACAGCAAGGCTTCCCTTGCACAAGCTGATGGGCCCTGATGCTAGAAGCCCTGCCCCAAACATCCAGTTACAGCAGGAGAAGGACCGCCTTCAGCAGgtgagtatcgtgatgggaattatacagtgtgttgtttggcaacataaacc Alignment from CESAR agACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGAT-GGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG tgcttacagaggggggaattatcacagcgaaatgcttcctcatgctgcagagACCTTGAAGGACAGCAAGGCTTCCCTTGCACAAGCTGATGGGCCCTGATGCTAGAAGCCCTGCCCCAAACATCCAGTTACAGCAGGAGAAGGACCGCCTTCAGCAGgtgagtatcgtgatgggaattatacagtgtgttgtttggcaacataaacc Alignment from Spaln_aa2Genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGC-CTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG tgcttacagaggggggaattatcacagcgaaatgcttcctcatgctgcagAGACCTTGAAGGACAGCAAGGCTTCCCTTGCACAAGCTGATGGGcCCTGATGCTAGAAGCCCTGCCCCAAACATCCAGTTACAGCAGGAGAAGGACCGCCTTCAGCAGgtgagtatcgtgatgggaattatacagtgtgttgtttggcaacataaacc Alignment from Spaln_nt2Genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGCCTCC-ATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG tgcttacagaggggggaattatcacagcgaaatgcttcctcatgctgcagAGACCTTGAAGGACAGCAAGGCTTCCCTTGCACAAGCTGATGGGCCCTGATGCTAGAAGCCCTGCCCCAAACATCCAGTTACAGCAGGAGAAGGACCGCCTTCAGCAGgtgagtatcgtgatgggaattatacagtgtgttgtttggcaacataaacc Alignment from Pairagon AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGAT-GGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG tgcttacagaggggggaattatcacagcgaaatgcttcctcatgctgcagAGACCTTGAAGGACAGCAAGGCTTCCCTTGCACAAGCTGATGGGCCCTGATGCTAGAAGCCCTGCCCCAAACATCCAGTTACAGCAGGAGAAGGACCGCCTTCAGCAGgtgagtatcgtgatgggaattatacagtgtgttgtttggcaacataaacc Alignment from Exonerate_protein2genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGAT-GGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG tgcttacagaggggggaattatcacagcgaaatgcttcctcatgctgcagAGACCTTGAAGGACAGCAAGGCTTCCCTTGCACAAGCTGATGGGCCCTGATGCTAGAAGCCCTGCCCCAAACATCCAGTTACAGCAGGAGAAGGACCGCCTTCAGCAGgtgagtatcgtgatgggaattatacagtgtgttgtttggcaacataaacc Alignment from Exonerate_coding2genome AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGAT-GGCCTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG tgcttacagaggggggaattatcacagcgaaatgcttcctcatgctgcagAGACCTTGAAGGACAGCAAGGCTTCCCTTGCACAAGCTGATGGGCCCTGATGCTAGAAGCCCTGCCCCAAACATCCAGTTACAGCAGGAGAAGGACCGCCTTCAGCAGgtgagtatcgtgatgggaattatacagtgtgttgtttggcaacataaacc Alignment from GeneWise AGACACTGAGGGACAGCAAGGCCTCCCTCTCACAAACTGATGGC-CTCCATGCTAGAAGCCCAGCCCCAAACATCCAACTACAACAGGAGAAGGACCGCCTCCAGCAG tgcttacagaggggggaattatcacagcgaaatgcttcctcatgctgcagAGACCTTGAAGGACAGCAAGGCTTCCCTTGCACAAGCTGATGGGCCCTGATGCTAGAAGCCCTGCCCCAAACATCCAGTTACAGCAGGAGAAGGACCGCCTTCAGCAGgtgagtatcgtgatgggaattatacagtgtgttgtttggcaacataaacc #### Cdc42bpg_ID1583_13 --> 0 - 0 Original Alignment GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTG-TGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG cagagctgaccactctgactttgctccgatttatttgtctttttccctagGAGCTGCCTGAGGCTCAGGTAGCACTGCAAGTGCAGGATGCCGAATTGCTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCACAGGAGAGAGAATCTGCTGCAGCAGGGCAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCATGGGTGGTCCGCAGGGAGgtatggcaagagacatccaaactgtcatgggacaccccatgtctctagca Alignment from CESAR GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTG-TGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG cagagctgaccactctgactttgctccgatttatttgtctttttccctagGAGCTGCCTGAGGCTCAGGTAGCACTGCAAGTGCAGGATGCCGAATTGCTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCACAGGAGAGAGAATCTGCTGCAGCAGGGCAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCATGGGTGGTCCGCAGGGAGgtatggcaagagacatccaaactgtcatgggacaccccatgtctctagca Alignment from Spaln_aa2Genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTG-TGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG cagagctgaccactctgactttgctccgatttatttgtctttttccctagGAGCTGCCTGAGGCTCAGGTAGCACTGCAAGTGCAGGATGCCGAATTGcTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCACAGGAGAGAGAATCTGCTGCAGCAGGGCAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCATGGGTGGTCCGCAGGGAGgtatggcaagagacatccaaactgtcatgggacaccccatgtctctagca Alignment from Spaln_nt2Genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTG-TGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG cagagctgaccactctgactttgctccgatttatttgtctttttccctagGAGCTGCCTGAGGCTCAGGTAGCACTGCAAGTGCAGGATGCCGAATTGCTGCCAAGC---AAACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCACAGGAGAGAGAATCTGCTGCAGCAGGGCAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCATGGGTGGTCCGCAGGGAGgtatggcaagagacatccaaactgtcatgggacaccccatgtctctagca Alignment from Pairagon GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTG-TGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG cagagctgaccactctgactttgctccgatttatttgtctttttccctagGAGCTGCCTGAGGCTCAGGTAGCACTGCAAGTGCAGGATGCCGAATTGCTGCCAAGC---AAACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCACAGGAGAGAGAATCTGCTGCAGCAGGGCAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCATGGGTGGTCCGCAGGGAGgtatggcaagagacatccaaactgtcatgggacaccccatgtctctagca Alignment from Exonerate_protein2genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTG-TGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG cagagctgaccactctgactttgctccgatttatttgtctttttccctagGAGCTGCCTGAGGCTCAGGTAGCACTGCAAGTGCAGGATGCCGAATTGCTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCACAGGAGAGAGAATCTGCTGCAGCAGGGCAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCATGGGTGGTCCGCAGGGAGgtatggcaagagacatccaaactgtcatgggacaccccatgtctctagca Alignment from Exonerate_coding2genome GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAGCTG-TGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG cagagctgaccactctgactttgctccgatttatttgtctttttccctagGAGCTGCCTGAGGCTCAGGTAGCACTGCAAGTGCAGGATGCCGAATTGCTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCACAGGAGAGAGAATCTGCTGCAGCAGGGCAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCATGGGTGGTCCGCAGGGAGgtatggcaagagacatccaaactgtcatgggacaccccatgtctctagca Alignment from GeneWise GAGCTGACTGAAGCTCAGGCAGCATTGCGAGTGCAGGATGCTGAG-CTGTGCCAAGCGCAGAACCGGCAGGAAGAATTCCTGCAGAGGCTGTGGGAAGCCCAGGAGAGAGAGGCAGCTGCAGCCAGCCAGATCCAGGCCCTGAACTCCCAGCTGGAGGAAGCCTGGGTTGTCCGGAGAGAG cagagctgaccactctgactttgctccgatttatttgtctttttccctagGAGCTGCCTGAGGCTCAGGTAGCACTGCAAGTGCAGGATGCCGAATTGCTGCCAAGCA---AACCGGCAGGAAGAAGTCTTGCAGAGGCTGTGGGAAGCACAGGAGAGAGAATCTGCTGCAGCAGGGCAGCTTCAGACCCTGAATACTCAGCTCCAAGAGGCATGGGTGGTCCGCAGGGAGgtatggcaagagacatccaaactgtcatgggacaccccatgtctctagca #### Cdc42bpg_ID1587_17 --> 0 - 2 Original Alignment CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAG-ACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCtg tgaggctattaggtaaagaggattaacactgataatattgcttttaccagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGACCAAGCAACGTCTGGAGGGCGAACGGCGGGAGCACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCtggtgggcctacacagctgggtggcaccactgatactgtgaacccgctcaca Alignment from CESAR CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAG-ACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCtg tgaggctattaggtaaagaggattaacactgataatattgcttttaccagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGACCAAGCAACGTCTGGAGGGCGAACGGCGGGAGCACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCtggtgggcctacacagctgggtggcaccactgatactgtgaacccgctcaca Alignment from Spaln_aa2Genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAG-ACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tgaggctattaggtaaagaggattaacactgataatattgcttttaccagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGACCAAGCAACGTCTGGAGGGCGAACGGCGGGAGcACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtgggcctacacagctgggtggcaccactgatactgtgaacccgctcaca Alignment from Spaln_nt2Genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAG-ACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tgaggctattaggtaaagaggattaacactgataatattgcttttaccagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGACCAAGCAACGTCTGGAGGGCGAACGGCGGGAGCACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtgggcctacacagctgggtggcaccactgatactgtgaacccgctcaca Alignment from Pairagon CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAG-ACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tgaggctattaggtaaagaggattaacactgataatattgcttttaccagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGACCAAGCAACGTCTGGAGGGCGAACGGCGGGAGCACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtgggcctacacagctgggtggcaccactgatactgtgaacccgctcaca Alignment from Exonerate_protein2genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAG-ACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tgaggctattaggtaaagaggattaacactgataatattgcttttaccagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGACCAAGCAACGTCTGGAGGGCGAACGGCGGGAGCACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtgggcctacacagctgggtggcaccactgatactgtgaacccgctcaca Alignment from Exonerate_coding2genome CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAG-ACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tgaggctattaggtaaagaggattaacactgataatattgcttttaccagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGACCAAGCAACGTCTGGAGGGCGAACGGCGGGAGCACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtgggcctacacagctgggtggcaccactgatactgtgaacccgctcaca Alignment from GeneWise CTGGCAGGAGAGCTGGAACTGGAGCTACAGAGCAAGCAGCGTTTGGAGGGTGAACGGCGGGAG-ACTGAGAGCAACTGGGAGGCTCAGATCGCTGACATCCTCAGCTG tgaggctattaggtaaagaggattaacactgataatattgcttttaccagTTGGCAGGAGAGCTGGAACTGGAGCTTCAGACCAAGCAACGTCTGGAGGGCGAACGGCGGGAGCACTGAGAGCAACTGGGAGGCTCAGATTGCTGACATCCTCAGCTGgtgggcctacacagctgggtggcaccactgatactgtgaacccgctcaca #### Cdc42bpg_ID1590_20 --> 1 - 1 Original Alignment cCGCCTGCAGGAGGCTGAGAAGCAAAGTCAGGCCCTGCAG---CAGGAG-GTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGg cactgcaaggtgtgagccctcctgggtgccactggtgttctgcctcacagcCGCCTGCAGGAAGCTGAGACACAAAGTGAGGCACTCCAGCAGCAGGAGCGTGGCTGTGCTAAAGGAAGAGCTTCAAGCTCGAGGACCAGGGggtgagaacctacttggatccaaccacaaggcctaacttatggggaccagg Alignment from CESAR cCGCCTGCAGGAGGCTGAGAAGCAAAGTCAGGCCCTGCAG---CAGGAG-GTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGg cactgcaaggtgtgagccctcctgggtgccactggtgttctgcctcacagcCGCCTGCAGGAAGCTGAGACACAAAGTGAGGCACTCCAGCAGCAGGAGCGTGGCTGTGCTAAAGGAAGAGCTTCAAGCTCGAGGACCAGGGggtgagaacctacttggatccaaccacaaggcctaacttatggggaccagg Alignment from Spaln_aa2Genome CCGCCTGCAGGAGGCTGAGAAGCAAAGTCAGGCCCTGCAGCAGGAG----GTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGG cactgcaaggtgtgagccctcctgggtgccactggtgttctgcctcacagCCGCCTGCAGGAAGCTGAGACACAAAGTGAGGCACTCCAGCAGCAGGAGcGTGGCTGTGCTAAAGGAAGAGCTTCAAGCTCGAGGACCAGGGGgtgagaacctacttggatccaaccacaaggcctaacttatggggaccagg Alignment from Spaln_nt2Genome CCGCCTGCAGGAGGCTGAGAAGCAAAGTCAGGCCCT---GCAGCAGGAG-GTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGG cactgcaaggtgtgagccctcctgggtgccactggtgttctgcctcacagCCGCCTGCAGGAAGCTGAGACACAAAGTGAGGCACTCCAGCAGCAGGAGCGTGGCTGTGCTAAAGGAAGAGCTTCAAGCTCGAGGACCAGGGGgtgagaacctacttggatccaaccacaaggcctaacttatggggaccagg Alignment from Pairagon CCGCCTGCAGGAGGCTGAGAAGCAAAGTCAGGCCCTGCAGCAGGAG----GTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGG cactgcaaggtgtgagccctcctgggtgccactggtgttctgcctcacagCCGCCTGCAGGAAGCTGAGACACAAAGTGAGGCACTCCAGCAGCAGGAGCGTGGCTGTGCTAAAGGAAGAGCTTCAAGCTCGAGGACCAGGGGgtgagaacctacttggatccaaccacaaggcctaacttatggggaccagg Alignment from Exonerate_protein2genome CCGCCTGCAGGAGGCTGAGAAGCAAAGTCAGGCCCTGCAGCAGGAG----GTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGG cactgcaaggtgtgagccctcctgggtgccactggtgttctgcctcacagCCGCCTGCAGGAAGCTGAGACACAAAGTGAGGCACTCCAGCAGCAGGAGCGTGGCTGTGCTAAAGGAAGAGCTTCAAGCTCGAGGACCAGGGGgtgagaacctacttggatccaaccacaaggcctaacttatggggaccagg Alignment from Exonerate_coding2genome CCGCCTGCAGGAGGCTGAGAAGCAAAGTCAGGCCCTGCAGCAGGAG----GTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGG cactgcaaggtgtgagccctcctgggtgccactggtgttctgcctcacagCCGCCTGCAGGAAGCTGAGACACAAAGTGAGGCACTCCAGCAGCAGGAGCGTGGCTGTGCTAAAGGAAGAGCTTCAAGCTCGAGGACCAGGGGgtgagaacctacttggatccaaccacaaggcctaacttatggggaccagg Alignment from GeneWise CCGCCTGCAGGAGGCTGAGAAGCAAAGTCAGGCCCTGCAGCAGGAG------GTGGCTGAGCTCCGGGAGGAACTGCAAGCTCGAGGACCGGGGG cactgcaaggtgtgagccctcctgggtgccactggtgttctgcctcacagCCGCCTGCAGGAAGCTGAGACACAAAGTGAGGCACTCCAGCAGCAGGAGC--GTGGCTGTGCTAAAGGAAGAGCTTCAAGCTCGAGGACCAGGGGgtgagaacctacttggatccaaccacaaggcctaacttatggggaccagg #### Cdc42bpg_ID1595_25 --> 2 - 0 Original Alignment ccTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCA-CAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG GTGCCGCGGCC tatacttgtgagtggacttctgttctcttgtgctctgcttcactccccagccTGTGGTTATTTCTGTCATTCAGCCTGTGCATCACCAAACCCCTCCTTGCCCTGTGCCCCCTGAACTCCTCCGTACAGCCTTGGGGGTGCACCCTGAAAAAGGCACAGGGACAGCCTATGAGGGCTTTTTGTCAgtaggatgagggggctgttgtttccttttttgcctgcagGTACGACAGCC Alignment from CESAR ccTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCA-CAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG GTGCCGCGGCC tatacttgtgagtggacttctgttctcttgtgctctgcttcactccccagccTGTGGTTATTTCTGTCATTCAGCCTGTGCATCACCAAACCCCTCCTTGCCCTGTGCCCCCTGAACTCCTCCGTACAGCCTTGGGGGTGCACCCTGAAAAAGGCACAGGGACAGCCTATGAGGGCTTTTTGTCAgtaggatgagggggctgtttgatttgattttattcttagGTACGACAGCC Alignment from Spaln_aa2Genome CCTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCA-CAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG GTGCCGCGGCC tatacttgtgagtggacttctgttctcttgtgctctgcttcactccccagCCTGTGGTTATTTCTGTCATTCAGCCTGTGCATCAcCAAACCCCTCCTTGCCCTGTGCCCCCTGAACTCCTCCGTACAGCCTTGGGGGTGCACCCTGAAAAAGGCACAGGGACAGCCTATGAGGGCTTTTTGTCAgtaggatgagggggctgttgtttccttttttgcctgcagGTACGACAGCC Alignment from Spaln_nt2Genome CCTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCAC-AAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG GTGCCGCGGCC tatacttgtgagtggacttctgttctcttgtgctctgcttcactccccagCCTGTGGTTATTTCTGTCATTCAGCCTGTGCATCACCAAACCCCTCCTTGCCCTGTGCCCCCTGAACTCCTCCGTACAGCCTTGGGGGTGCACCCTGAAAAAGGCACAGGGACAGCCTATGAGGGCTTTTTGTCAgtaggatgagggggctgttgtttccttttttgcctgcagGTACGACAGCC Alignment from Pairagon CCTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCA-CAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG GTGCCGCGGCC tatacttgtgagtggacttctgttctcttgtgctctgcttcactccccagCCTGTGGTTATTTCTGTCATTCAGCCTGTGCATCACCAAACCCCTCCTTGCCCTGTGCCCCCTGAACTCCTCCGTACAGCCTTGGGGGTGCACCCTGAAAAAGGCACAGGGACAGCCTATGAGGGCTTTTTGTCAgtaggatgagggggctgttgtttccttttttgcctgcagGTACGACAGCC Alignment from Exonerate_protein2genome CCTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCA-CAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG GTGCCGCGGCC tatacttgtgagtggacttctgttctcttgtgctctgcttcactccccagCCTGTGGTTATTTCTGTCATTCAGCCTGTGCATCACCAAACCCCTCCTTGCCCTGTGCCCCCTGAACTCCTCCGTACAGCCTTGGGGGTGCACCCTGAAAAAGGCACAGGGACAGCCTATGAGGGCTTTTTGTCAgtaggatgagggggctgttgtttccttttttgcctgcagGTACGACAGCC Alignment from Exonerate_coding2genome CCTGTGGCTACTTCTGTCACTCAGCTTGTGCGTCA-CAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG GTGCCGCGGCC tatacttgtgagtggacttctgttctcttgtgctctgcttcactccccagCCTGTGGTTATTTCTGTCATTCAGCCTGTGCATCACCAAACCCCTCCTTGCCCTGTGCCCCCTGAACTCCTCCGTACAGCCTTGGGGGTGCACCCTGAAAAAGGCACAGGGACAGCCTATGAGGGCTTTTTGTCAgtaggatgagggggctgttgtttccttttttgcctgcagGTACGACAGCC Alignment from GeneWise CCTGTGGCTACTTCTGTCACTCAGCTTGTGCG-TCACAAGCCCCACCTTGCCCTGTGCCCCCTGAACTCCTCCGCACAGCCTTGGGGGTGCACCCCGAAACAGGCACAGGGACTGCCTATGAGGGCTTCCTGTCG GTGCCGCGGCC tatacttgtgagtggacttctgttctcttgtgctctgcttcactccccagCCTGTGGTTATTTCTGTCATTCAGCCTGTGCATCACCAAACCCCTCCTTGCCCTGTGCCCCCTGAACTCCTCCGTACAGCCTTGGGGGTGCACCCTGAAAAAGGCACAGGGACAGCCTATGAGGGCTTTTTGTCAgtaggatgagggggctgttgtttccttttttgcctgcagGTACGACAGCC #### Cdc42bpg_ID1596_26 --> 0 - 2 Original Alignment GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGG-GTCCTCCTGCAGGCCTTGGATCTAag GCTTTTTGTCAgtaagttgagggggctgtttgatttgattttattcttagGTACGACAGCCGTCATGTGTTCGATGGGACTGGCAGCGGGTGTATGCTGCTCTCAGCGACTCCCGTTTGTTATTGTTTGATGCCCCTGACCCTCGTGGTAGCCTGGCAAGTGGGCATCCTTCTTCAGGCCTTAGATCTAaggtaagggacaggcccacaggacatagggagtccacaccagggtggtctgt Alignment from CESAR GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGG-GTCCTCCTGCAGGCCTTGGATCTAag GCTTTTTGTCAgtaggatgagggggctgtttgatttgattttattcttagGTACGACAGCCGTCATGTGTTCGATGGGACTGGCAGCGGGTGTATGCTGCTCTCAGCGACTCCCGTTTGTTATTGTTTGATGCCCCTGACCCTCGTGGTAGCCTGGCAAGTGGGCATCCTTCTTCAGGCCTTAGATCTAaggtaagggacaggcccacaggacatagggagtccacaccagggtggtctgt Alignment from Spaln_aa2Genome GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGG-GTCCTCCTGCAGGCCTTGGATCTAAG GCTTTTTGTCAgtaagttgagggggctgtttgatttgattttattcttagGTACGACAGCCGTCATGTGTTCGATGGGACTGGCAGCGGGTGTATGCTGCTCTCAGCGACTCCCGTTTGTTATTGTTTGATGCCCCTGACCCTCGTGGTAGCCTGGCAAGTGGGcATCCTTCTTCAGGCCTTAGATCTAAGgtaagggacaggcccacaggacatagggagtccacaccagggtggtctgt Alignment from Spaln_nt2Genome GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGGG-TCCTCCTGCAGGCCTTGGATCTAAG GCTTTTTGTCAgtaagttgagggggctgtttgatttgattttattcttagGTACGACAGCCGTCATGTGTTCGATGGGACTGGCAGCGGGTGTATGCTGCTCTCAGCGACTCCCGTTTGTTATTGTTTGATGCCCCTGACCCTCGTGGTAGCCTGGCAAGTGGGCATCCTTCTTCAGGCCTTAGATCTAAGgtaagggacaggcccacaggacatagggagtccacaccagggtggtctgt Alignment from Pairagon GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGG-GTCCTCCTGCAGGCCTTGGATCTAAG GCTTTTTGTCAgtaagttgagggggctgtttgatttgattttattcttagGTACGACAGCCGTCATGTGTTCGATGGGACTGGCAGCGGGTGTATGCTGCTCTCAGCGACTCCCGTTTGTTATTGTTTGATGCCCCTGACCCTCGTGGTAGCCTGGCAAGTGGGCATCCTTCTTCAGGCCTTAGATCTAAGgtaagggacaggcccacaggacatagggagtccacaccagggtggtctgt Alignment from Exonerate_protein2genome GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGT-GGGGTCCTCCTGCAGGCCTTGGATCTAAG GCTTTTTGTCAgtaagttgagggggctgtttgatttgattttattcttagGTACGACAGCCGTCATGTGTTCGATGGGACTGGCAGCGGGTGTATGCTGCTCTCAGCGACTCCCGTTTGTTATTGTTTGATGCCCCTGACCCTCGTGGTAGCCTGGCAAGTGGGCATCCTTCTTCAGGCCTTAGATCTAAGgtaagggacaggcccacaggacatagggagtccacaccagggtggtctgt Alignment from Exonerate_coding2genome GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGT-GGGGTCCTCCTGCAGGCCTTGGATCTAAG GCTTTTTGTCAgtaagttgagggggctgtttgatttgattttattcttagGTACGACAGCCGTCATGTGTTCGATGGGACTGGCAGCGGGTGTATGCTGCTCTCAGCGACTCCCGTTTGTTATTGTTTGATGCCCCTGACCCTCGTGGTAGCCTGGCAAGTGGGCATCCTTCTTCAGGCCTTAGATCTAAGgtaagggacaggcccacaggacatagggagtccacaccagggtggtctgt Alignment from GeneWise GCTTCCTGTCG GTGCCGCGGCCCTCAGGTGTCCGTCGGGGCTGGCAGCGGGTGTACGCCGCTCTCAGTGACTCCCGCCTGTTGTTGTTTGATGCTCCTGACCCTCGAGGCAGCCTGGCCAGTGGG-GTCCTCCTGCAGGCCTTGGATCTAAG GCTTTTTGTCAgtaagttgagggggctgtttgatttgattttattcttagGTACGACAGCCGTCATGTGTTCGATGGGACTGGCAGCGGGTGTATGCTGCTCTCAGCGACTCCCGTTTGTTATTGTTTGATGCCCCTGACCCTCGTGGTAGCCTGGCAAGTGGGCATCCTTCTTCAGGCCTTAGATCTAAGgtaagggacaggcccacaggacatagggagtccacaccagggtggtctgt #### Cdc42bpg_ID1603_33 --> 2 - 2 Original Alignment agAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGC-CGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCag gcccttacagctataagtgaacagctaccaatgcttttttgcctatgtagaaAAAGATGAGTTTGAGATTCCTGACCTGACA---AACAGCCGGCGTCAGCTCTTCCGGAGCAAGAGTAAGCGCCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAACAGCGTaggtaagagactatatggcaggcctggctactggctcggggactttccattc Alignment from CESAR agAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGC-CGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCag gcccttacagctataagtgaacagctaccaatgcttttttgcctatgtagaaAAAGATGAGTTTGAGATTCCTGACCTGACA---AACAGCCGGCGTCAGCTCTTCCGGAGCAAGAGTAAGCGCCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAACAGCGTaggtaagagactatatggcaggcctggctactggctcggggactttccattc Alignment from Spaln_aa2Genome AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCCGTTTC-TTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG gcccttacagctataagtgaacagctaccaatgcttttttgcctatgtagAAAAAGATGAGTTTGAGATTCCTGACCTGACA---AACAGCCGGCGTCAGCTCTTCCGGAGCAAGAGTAAGCGCCCGTTTcTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAACAGCGTAGgtaagagactatatggcaggcctggctactggctcggggactttccattc Alignment from Spaln_nt2Genome AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGCC-GTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG gcccttacagctataagtgaacagctaccaatgcttttttgcctatgtagAAAAAGATGAGTTTGAGATTCCTGACCTGAC---AAACAGCCGGCGTCAGCTCTTCCGGAGCAAGAGTAAGCGCCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAACAGCGTAGgtaagagactatatggcaggcctggctactggctcggggactttccattc Alignment from Pairagon AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCG-CCGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG gcccttacagctataagtgaacagctaccaatgcttttttgcctatgtagAAAAAGATGAGTTTGAGATTCCTGACCTGACA---AACAGCCGGCGTCAGCTCTTCCGGAGCAAGAGTAAGCGCCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAACAGCGTAGgtaagagactatatggcaggcctggctactggctcggggactttccattc Alignment from Exonerate_protein2genome AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGC-CGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG gcccttacagctataagtgaacagctaccaatgcttttttgcctatgtagAAAAAGATGAGTTTGAGATTCCTGACCTGACA---AACAGCCGGCGTCAGCTCTTCCGGAGCAAGAGTAAGCGCCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAACAGCGTAGgtaagagactatatggcaggcctggctactggctcggggactttccattc Alignment from Exonerate_coding2genome AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGC-CGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG gcccttacagctataagtgaacagctaccaatgcttttttgcctatgtagAAAAAGATGAGTTTGAGATTCCTGACCTGACA---AACAGCCGGCGTCAGCTCTTCCGGAGCAAGAGTAAGCGCCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAACAGCGTAGgtaagagactatatggcaggcctggctactggctcggggactttccattc Alignment from GeneWise AGAAGGACGAGTTTGACATTCCCGACCTCACGGACAACAGCCGGCGCCAGCTGTTCCGCACCAAGAGCAAGCGC-CGTTTCTTCTTCCGGGTGTCTGATGAGCTGCGACAGCAGCAGCGCAG gcccttacagctataagtgaacagctaccaatgcttttttgcctatgtagAAAAAGATGAGTTTGAGATTCCTGACCTGACA---AACAGCCGGCGTCAGCTCTTCCGGAGCAAGAGTAAGCGCCCGTTTCTTCTTCCGTGTGTCTGATGAGCTGCAACAGCAACAGCGTAGgtaagagactatatggcaggcctggctactggctcggggactttccattc #### Cdc42bpg_ID1604_34 --> 1 - 0 Original Alignment gGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTG-GTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ataactcattgtcagctatttatcaacatactcagttcatgttttcttagaGAGATGCTGAAGGACCCCTTCGTGCGGTTCAAATTCATTTCACCACCCACCAACTTCATTCACCTGCGTTCATGTGGGACATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGCgtatgtcttgtgcaggggattgctagacctgtcacaaagcttcaatcatg Alignment from CESAR gGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTG-GTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ataactcattgtcagctatttatcaacatactcagttcatgttttcttagaGAGATGCTGAAGGACCCCTTCGTGCGGTTCAAATTCATTTCACCACCCACCAACTTCATTCACCTGCGTTCATGTGGGACATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGCgtatgtcttgtgcaggggattgctagacctgtcacaaagcttcaatcatg Alignment from Spaln_aa2Genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTG-GTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ataactcattgtcagctatttatcaacatactcagttcatgttttcttagAGAGATGCTGAAGGACCCCTTCGTGCGGTTCAAATTCATTTCACCACCCACCAACTTCATTCACCTGcGTTCATGTGGGACATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGCgtatgtcttgtgcaggggattgctagacctgtcacaaagcttcaatcatg Alignment from Spaln_nt2Genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTG-GTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ataactcattgtcagctatttatcaacatactcagttcatgttttcttagAGAGATGCTGAAGGACCCCTTCGTGCGGTTCAAATTCATTTCACCACCCACCAACTTCATTCACCTGCGTTCATGTGGGACATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGCgtatgtcttgtgcaggggattgctagacctgtcacaaagcttcaatcatg Alignment from Pairagon GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTG-GTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ataactcattgtcagctatttatcaacatactcagttcatgttttcttagAGAGATGCTGAAGGACCCCTTCGTGCGGTTCAAATTCATTTCACCACCCACCAACTTCATTCACCTGCGTTCATGTGGGACATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGCgtatgtcttgtgcaggggattgctagacctgtcacaaagcttcaatcatg Alignment from Exonerate_protein2genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTG-GTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ataactcattgtcagctatttatcaacatactcagttcatgttttcttagAGAGATGCTGAAGGACCCCTTCGTGCGGTTCAAATTCATTTCACCACCCACCAACTTCATTCACCTGCGTTCATGTGGGACATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGCgtatgtcttgtgcaggggattgctagacctgtcacaaagcttcaatcatg Alignment from Exonerate_coding2genome GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTG-GTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ataactcattgtcagctatttatcaacatactcagttcatgttttcttagAGAGATGCTGAAGGACCCCTTCGTGCGGTTCAAATTCATTTCACCACCCACCAACTTCATTCACCTGCGTTCATGTGGGACATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGCgtatgtcttgtgcaggggattgctagacctgtcacaaagcttcaatcatg Alignment from GeneWise GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTG-GTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG ataactcattgtcagctatttatcaacatactcagttcatgttttcttagAGAGATGCTGAAGGACCCCTTCGTGCGGTTCAAATTCATTTCACCACCCACCAACTTCATTCACCTGCGTTCATGTGGGACATACAGAGGGGAGGTCCAACACTAGGGATGGGACCCGCgtatgtcttgtgcaggggattgctagacctgtcacaaagcttcaatcatg #### Cdc42bpg_ID1605_35 --> 0 - 1 Original Alignment GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGC-AGTGATGGTCTCCCTGGAGAAACAGACCCAt tggtctttaatagagatgcagtcccatgtaaagtgtttatttccttaaagGCCCAAGAACAAAAGAGCAGTGGTGCCCGTAGCTCTGGACCACAACGGCCTCACAGCTTCTTAAAGGCATTGCGGCGGCCAGTGTCAACAGACCAGTGATCGTCTCCCAGGCCGAACAGACCCAtgtacgtatagggatagctctcagtggcaagttcctgcttgctttcccttt Alignment from CESAR GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGC-AGTGATGGTCTCCCTGGAGAAACAGACCCAt tggtctttaatagagatgcagtcccatgtaaagtgtttatttccttaaagGCCCAAGAACAAAAGAGCAGTGGTGCCCGTAGCTCTGGACCACAACGGCCTCACAGCTTCTTAAAGGCATTGCGGCGGCCAGTGTCAACAGACCAGTGATCGTCTCCCAGGCCGAACAGACCCAtgtacgtatagggatagctctcagtggcaagttcctgcttgctttcccttt Alignment from Spaln_aa2Genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGC-AGTGATGGTCTCCCTGGAGAAACAGACCCAT tggtctttaatagagatgcagtcccatgtaaagtgtttatttccttaaagGCCCAAGAACAAAAGAGCAGTGGTGCCCGTAGCTCTGGACCACAACGGCCTCACAGCTTCTTAAAGGCATTGCGGCGGCCAGTGTCAACAGACcAGTGATCGTCTCCCAGGCCGAACAGACCCATgtacgtatagggatagctctcagtggcaagttcctgcttgctttcccttt Alignment from Spaln_nt2Genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGC-AGTGATGGTCTCCCTGGAGAAACAGACCCAT tggtctttaatagagatgcagtcccatgtaaagtgtttatttccttaaagGCCCAAGAACAAAAGAGCAGTGGTGCCCGTAGCTCTGGACCACAACGGCCTCACAGCTTCTTAAAGGCATTGCGGCGGCCAGTGTCAACAGACCAGTGATCGTCTCCCAGGCCGAACAGACCCATgtacgtatagggatagctctcagtggcaagttcctgcttgctttcccttt Alignment from Pairagon GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGG-CAGTGATGGTCTCCCTGGAGAAACAGACCCAT tggtctttaatagagatgcagtcccatgtaaagtgtttatttccttaaagGCCCAAGAACAAAAGAGCAGTGGTGCCCGTAGCTCTGGACCACAACGGCCTCACAGCTTCTTAAAGGCATTGCGGCGGCCAGTGTCAACAGACCAGTGATCGTCTCCCAGGCCGAACAGACCCATgtacgtatagggatagctctcagtggcaagttcctgcttgctttcccttt Alignment from Exonerate_protein2genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGC-AGTGATGGTCTCCCTGGAGAAACAGACCCAT tggtctttaatagagatgcagtcccatgtaaagtgtttatttccttaaagGCCCAAGAACAAAAGAGCAGTGGTGCCCGTAGCTCTGGACCACAACGGCCTCACAGCTTCTTAAAGGCATTGCGGCGGCCAGTGTCAACAGACCAGTGATCGTCTCCCAGGCCGAACAGACCCATgtacgtatagggatagctctcagtggcaagttcctgcttgctttcccttt Alignment from Exonerate_coding2genome GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGC-AGTGATGGTCTCCCTGGAGAAACAGACCCAT tggtctttaatagagatgcagtcccatgtaaagtgtttatttccttaaagGCCCAAGAACAAAAGAGCAGTGGTGCCCGTAGCTCTGGACCACAACGGCCTCACAGCTTCTTAAAGGCATTGCGGCGGCCAGTGTCAACAGACCAGTGATCGTCTCCCAGGCCGAACAGACCCATgtacgtatagggatagctctcagtggcaagttcctgcttgctttcccttt Alignment from GeneWise GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACG-GGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT tggtctttaatagagatgcagtcccatgtaaagtgtttatttccttaaagGCCCAAGAACAAAAGAGCAGTGGTGCCCGTAGCTCTGGACCACAACGGCCTCACAGCTTCTTAAAGGCATTGCGGCGGCCAGTGTCAACAGACCAGTGATCGTCTCCCAGGCCGAACAGACCCATgtacgtatagggatagctctcagtggcaagttcctgcttgctttcccttt #### Cdk2ap2_ID299_3 --> 0 - 1 Original Alignment GCGATGAAGCCACCTGGTTCC-CAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAg gacaaggcccctattgggggtacttgagtcctctctatgactgataccagGCAATGAAGCCACCCGGTTCCCCAGGGCTCTCAGCGCACCTTCACCGACCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCACCTATGCTGGTAGCAAAAGTTCCATGGACCGCCTGAAGAGAggtgagtgcaaccatggctaaactgtgacaaaacagtgtagtcaggaaagt Alignment from CESAR GCGATGAAGCCACCTGGTTCC-CAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAg gacaaggcccctattgggggtacttgagtcctctctatgactgataccagGCAATGAAGCCACCCGGTTCCCCAGGGCTCTCAGCGCACCTTCACCGACCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCACCTATGCTGGTAGCAAAAGTTCCATGGACCGCCTGAAGAGAggtgagtgcaaccatggctaaactgtgacaaaacagtgtagtcaggaaagt Alignment from Spaln_aa2Genome GCGATGAAGCCACCTGGTTCC-CAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG gacaaggcccctattgggggtacttgagtcctctctatgactgataccagGCAATGAAGCCACCCGGTTCCcCAGGGCTCTCAGCGCACCTTCACCGACCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCACCTATGCTGGTAGCAAAAGTTCCATGGACCGCCTGAAGAGAGgtgagtgcaaccatggctaaactgtgacaaaacagtgtagtcaggaaagt Alignment from Spaln_nt2Genome GCGATGAAGCCACCTGGTTCCC-AGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG gacaaggcccctattgggggtacttgagtcctctctatgactgataccagGCAATGAAGCCACCCGGTTCCCCAGGGCTCTCAGCGCACCTTCACCGACCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCACCTATGCTGGTAGCAAAAGTTCCATGGACCGCCTGAAGAGAGgtgagtgcaaccatggctaaactgtgacaaaacagtgtagtcaggaaagt Alignment from Pairagon GCGATGAAGCCACCTGGTT-CCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG gacaaggcccctattgggggtacttgagtcctctctatgactgataccagGCAATGAAGCCACCCGGTTCCCCAGGGCTCTCAGCGCACCTTCACCGACCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCACCTATGCTGGTAGCAAAAGTTCCATGGACCGCCTGAAGAGAGgtgagtgcaaccatggctaaactgtgacaaaacagtgtagtcaggaaagt Alignment from Exonerate_protein2genome GCGATGAAGCCACCTGGTTCC-CAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG gacaaggcccctattgggggtacttgagtcctctctatgactgataccagGCAATGAAGCCACCCGGTTCCCCAGGGCTCTCAGCGCACCTTCACCGACCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCACCTATGCTGGTAGCAAAAGTTCCATGGACCGCCTGAAGAGAGgtgagtgcaaccatggctaaactgtgacaaaacagtgtagtcaggaaagt Alignment from Exonerate_coding2genome GCGATGAAGCCACCTGGTTCC-CAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG gacaaggcccctattgggggtacttgagtcctctctatgactgataccagGCAATGAAGCCACCCGGTTCCCCAGGGCTCTCAGCGCACCTTCACCGACCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCACCTATGCTGGTAGCAAAAGTTCCATGGACCGCCTGAAGAGAGgtgagtgcaaccatggctaaactgtgacaaaacagtgtagtcaggaaagt Alignment from GeneWise GCGATGAAGCCACCTGGT-TCCCAGGGCTCTCAGAGCACCTACACGGACCTGCTGTCTGTCATAGAGGAGATGGGCAAAGAGATCCGGCCCACCTATGCTGGTAGCAAGAGTGCCATGGAGCGCCTGAAGAGAG gacaaggcccctattgggggtacttgagtcctctctatgactgataccagGCAATGAAGCCACCCGGTTCCCCAGGGCTCTCAGCGCACCTTCACCGACCTGCTGTCTGTTATAGAGGAGATGGGCAAAGAAATCCGGCCCACCTATGCTGGTAGCAAAAGTTCCATGGACCGCCTGAAGAGAGgtgagtgcaaccatggctaaactgtgacaaaacagtgtagtcaggaaagt #### Chuk_ID8921_7 --> 0 - 2 Original Alignment GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTT-GAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCtg taaaaaatctcaattttatagctccagaagaaatcttctttgtctggcagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTCGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCtggtgagacagtgttgttcacggttgtggaagcatcctgcttaatctagaac Alignment from CESAR GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTT-GAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCtg taaaaaatctcaattttatagctccagaagaaatcttctttgtctggcagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTCGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCtggtgagacagtgttgttcacggttgtggaagcatcctgcttaatctagaac Alignment from Spaln_aa2Genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTG-TTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTGGCATGAGAAG taaaaaatctcaattttatagctccagaagaaatcttctttgtctggcagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCCACTGTGGATTATTGGAGCTTTGGTACCATGGTCtTTCGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGGTGAGACAGTgttgttcacggttgtggaagcatcctgcttaatctagaac Alignment from Spaln_nt2Genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTG-TTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG taaaaaatctcaattttatagctccagaagaaatcttctttgtctggcagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTCGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtgagacagtgttgttcacggttgtggaagcatcctgcttaatctagaac Alignment from Pairagon GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTGTTT-GAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG taaaaaatctcaattttatagctccagaagaaatcttctttgtctggcagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTCGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtgagacagtgttgttcacggttgtggaagcatcctgcttaatctagaac Alignment from Exonerate_protein2genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTG-TTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG taaaaaatctcaattttatagctccagaagaaatcttctttgtctggcagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTCGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtgagacagtgttgttcacggttgtggaagcatcctgcttaatctagaac Alignment from Exonerate_coding2genome GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATGGTG-TTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG taaaaaatctcaattttatagctccagaagaaatcttctttgtctggcagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTCGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtgagacagtgttgttcacggttgtggaagcatcctgcttaatctagaac Alignment from GeneWise GCCCCAGAGCTCTTTGAAAATAAGCCGTACACAGCCACTGTGGATTATTGGAGCTTTGGGACCATG-GTGTTTGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTGCAGCCATTTACCTG taaaaaatctcaattttatagctccagaagaaatcttctttgtctggcagGCCCCAGACCTCTTTGAAAATAAGCCATACACAGCCACTGTGGATTATTGGAGCTTTGGTACCATGGTCTTTCGAATGTATTGCTGGATATAGGCCTTTTTTGCATCATCTACAGCCATTTACCTGgtgagacagtgttgttcacggttgtggaagcatcctgcttaatctagaac #### Col17a1_ID10271_51 --> 2 - 1 Original Alignment gtGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGG-CCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAg ttttgcctcttactcatccataggtgtaatctcttactctttattttcaggtGACAGGGACCCAGCTAGGCCACAAGGCCCACCAGGGCCAACCTGGTCCCAGAGGGAACAAAGAAGAAAAAGGGGATAAAggcaggtagtggaagtgtgatggggtgccggggcttaggttgtgaaaacta Alignment from CESAR gtGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCA-CCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAg ttttgcctcttactcatccataggtgtaatctcttactctttattttcaggtGACAGGGACCCAGCTAGGCCACAAGGCCCACCAGGGCCAACCTGGTCCCAGAGGGAACAAAGAAGAAAAAGGGGATAAAggcaggtagtggaagtgtgatggggtgccggggcttaggttgtgaaaacta Alignment from Spaln_aa2Genome GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCA-CCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ttttgcctcttactcatccataggtgtaatctcttactctttattttcagGTGACAGGGACCCAGCTAGGCCACAAGGCCCACCAGGGCCAaCCTGGTCCCAGAGGGAACAAAGAAGAAAAAGGGGATAAAGgcaggtagtggaagtgtgatggggtgccggggcttaggttgtgaaaacta Alignment from Spaln_nt2Genome GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCACCC-GGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ttttgcctcttactcatccataggtgtaatctcttactctttattttcagGTGACAGGGACCCAGCTAGGCCACAAGGCCCACCAGGGCCAACCTGGTCCCAGAGGGAACAAAGAAGAAAAAGGGGATAAAGgcaggtagtggaagtgtgatggggtgccggggcttaggttgtgaaaacta Alignment from Pairagon GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCC-ACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ttttgcctcttactcatccataggtgtaatctcttactctttattttcagGTGACAGGGACCCAGCTAGGCCACAAGGCCCACCAGGGCCAACCTGGTCCCAGAGGGAACAAAGAAGAAAAAGGGGATAAAGgcaggtagtggaagtgtgatggggtgccggggcttaggttgtgaaaacta Alignment from Exonerate_protein2genome GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCA-CCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ttttgcctcttactcatccataggtgtaatctcttactctttattttcagGTGACAGGGACCCAGCTAGGCCACAAGGCCCACCAGGGCCAACCTGGTCCCAGAGGGAACAAAGAAGAAAAAGGGGATAAAGgcaggtagtggaagtgtgatggggtgccggggcttaggttgtgaaaacta Alignment from Exonerate_coding2genome GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGGCCA-CCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAG ttttgcctcttactcatccataggtgtaatctcttactctttattttcagGTGACAGGGACCCAGCTAGGCCACAAGGCCCACCAGGGCCAACCTGGTCCCAGAGGGAACAAAGAAGAAAAAGGGGATAAAGgcaggtagtggaagtgtgatggggtgccggggcttaggttgtgaaaacta Alignment from GeneWise GTGACAGGGGCCCTGCTGGACCACGAGGTCCTCCAGGG-CCACCCGGCCCCAGAGGGAACAAAGGAGAGAAAGGAGACAAAGGT ttttgcctcttactcatccataggtgtaatctcttactctttattttcagGTGACAGGGACCCAGCTAGGCCACAAGGCCCACCAGGGCCAACCTGGTCCCAGAGGGAACAAAGAAGAAAAAGGGGATAAAGGCaggtagtggaagtgtgatggggtgccggggcttaggttgtgaaaacta #### Col17a1_ID10272_50 --> 2 - 1 Original Alignment ccTACGGCACTATCCCGGGACCACCTGGG-CAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAg aactaaagatactatatgagccttgaagtcacgcctcacttcttctacagccTATGGTATGATTCCAGGTCCACCTGGCCCAGAAAGGAGATGTAGGGACCCCGGGCCCCAAAggtaagcatgccaaatcgatcgtttagttgatatagtttagttgataatgc Alignment from CESAR ccTACGGCACTATCCCGGGACCACCTGGG-CAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAg aactaaagatactatatgagccttgaagtcacgcctcacttcttctacagccTATGGTATGATTCCAGGTCCACCTGGCCCAGAAAGGAGATGTAGGGACCCCGGGCCCCAAAggtaagcatgccaaatcgatcgtttagttgatatagtttagttgataatgc Alignment from Spaln_aa2Genome CCTACGGCACTATCCCGGGACCACCTGGG-CAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG aactaaagatactatatgagccttgaagtcacgcctcacttcttctacagCCTATGGTATGATTCCAGGTCCACCTGGCcCAGAAAGGAGATGTAGGGACCCCGGGCCCCAAAGgtaagcatgccaaatcgatcgtttagttgatatagtttagttgataatgc Alignment from Spaln_nt2Genome CCTACGGCACTATCCCGGGACCACCTGGGC-AGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG aactaaagatactatatgagccttgaagtcacgcctcacttcttctacagCCTATGGTATGATTCCAGGTCCACCTGGCCCAGAAAGGAGATGTAGGGACCCCGGGCCCCAAAGgtaagcatgccaaatcgatcgtttagttgatatagtttagttgataatgc Alignment from Pairagon CCTACGGCACTATCCCGGGACCACCTGG-GCAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG aactaaagatactatatgagccttgaagtcacgcctcacttcttctacagCCTATGGTATGATTCCAGGTCCACCTGGCCCAGAAAGGAGATGTAGGGACCCCGGGCCCCAAAGgtaagcatgccaaatcgatcgtttagttgatatagtttagttgataatgc Alignment from Exonerate_protein2genome CCTACGGCACTATCCCGGGACCACCTGGG-CAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG aactaaagatactatatgagccttgaagtcacgcctcacttcttctacagCCTATGGTATGATTCCAGGTCCACCTGGCCCAGAAAGGAGATGTAGGGACCCCGGGCCCCAAAGgtaagcatgccaaatcgatcgtttagttgatatagtttagttgataatgc Alignment from Exonerate_coding2genome CCTACGGCACTATCCCGGGACCACCTGGG-CAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG aactaaagatactatatgagccttgaagtcacgcctcacttcttctacagCCTATGGTATGATTCCAGGTCCACCTGGCCCAGAAAGGAGATGTAGGGACCCCGGGCCCCAAAGgtaagcatgccaaatcgatcgtttagttgatatagtttagttgataatgc Alignment from GeneWise CCTACGGCACTATCCCGGGACCACCTGGG-CAGAAGGGAGATGTGGGAACCCCAGGCCCCAAAG aactaaagatactatatgagccttgaagtcacgcctcacttcttctacagCCTATGGTATGATTCCAGGTCCACCTGGCCCAGAAAGGAGATGTAGGGACCCCGGGCCCCAAAGgtaagcatgccaaatcgatcgtttagttgatatagtttagttgataatgc #### Col17a1_ID10275_47 --> 2 - 1 Original Alignment ccGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCA-GGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAa aggttctgccctgcttcatgttctttcttttttttcttttctcattccagccACGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCACCAGCTCCTCGAGGGCCTCCTCGGGGTCTCAACAGCTTTGTCTACGTATGCAGCGGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGCTACCTCACAagtaagtaccctgggtgctttctgtccccctacagagacatctagccatta Alignment from CESAR ccGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCA-GGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAa aggttctgccctgcttcatgttctttcttttttttcttttctcattccagccACGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCACCAGCTCCTCGAGGGCCTCCTCGGGGTCTCAACAGCTTTGTCTACGTATGCAGCGGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGCTACCTCACAagtaagtaccctgggtgctttctgtccccctacagagacatctagccatta Alignment from Spaln_aa2Genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCA-GGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA aggttctgccctgcttcatgttctttcttttttttcttttctcattccagCCACGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCACCAGCTCCTCGAGGGCCTCCTcGGGGTCTCAACAGCTTTGTCTACGTATGCAGCGGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGCTACCTCACAAgtaagtaccctgggtgctttctgtccccctacagagacatctagccatta Alignment from Spaln_nt2Genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCA-GGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA aggttctgccctgcttcatgttctttcttttttttcttttctcattccagCCACGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCACCAGCTCCTCGAGGGCCTCCTCGGGGTCTCAACAGCTTTGTCTACGTATGCAGCGGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGCTACCTCACAAgtaagtaccctgggtgctttctgtccccctacagagacatctagccatta Alignment from Pairagon CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCC-CCCAGGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA aggttctgccctgcttcatgttctttcttttttttcttttctcattccagCCACGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCACCAGCTCCTCGAGGGCCTCCTCGGGGTCTCAACAGCTTTGTCTACGTATGCAGCGGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGCTACCTCACAAgtaagtaccctgggtgctttctgtccccctacagagacatctagccatta Alignment from Exonerate_protein2genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCA-GGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA aggttctgccctgcttcatgttctttcttttttttcttttctcattccagCCACGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCACCAGCTCCTCGAGGGCCTCCTCGGGGTCTCAACAGCTTTGTCTACGTATGCAGCGGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGCTACCTCACAAgtaagtaccctgggtgctttctgtccccctacagagacatctagccatta Alignment from Exonerate_coding2genome CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCA-GGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA aggttctgccctgcttcatgttctttcttttttttcttttctcattccagCCACGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCACCAGCTCCTCGAGGGCCTCCTCGGGGTCTCAACAGCTTTGTCTACGTATGCAGCGGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGCTACCTCACAAgtaagtaccctgggtgctttctgtccccctacagagacatctagccatta Alignment from GeneWise CCGCTGGTTTGTCCTCCATCCCAGGCCCTCCAGGCCCACCAGGGCCCCCAGGTCCTCGAGGGCCCCCA-GGTGTCTCAGCAGCTCTGTCCACCTATGCAGCTGAGAACAGCGACAACTTCCGCAGCGAGCTGATTAGCTACCTCACAA aggttctgccctgcttcatgttctttcttttttttcttttctcattccagCCACGAGTTTGTCGTCCACCCCAGGCCCAGCAGGTCCATCTGGACCACCAGCTCCTCGAGGGCCTCCTCGGGGTCTCAACAGCTTTGTCTACGTATGCAGCGGAAAACAGTGATAACTTCCGATGTGAGCTGATTAGCTACCTCACAAgtaagtaccctgggtgctttctgtccccctacagagacatctagccatta #### Col17a1_ID10285_37 --> 2 - 1 Original Alignment aaGGTGTTGACTTACGAGGTCCC-CCTGGCCCACCTGGCCCACGAGGGCCACCAg ggggctaatcagtcttctttttgatttatctctgtctcctctccttccagaaGGGGTTGGTTTACATGGCCCCCCCTGGCCCCTCTGGACCACGAGGACCGCCAggtaagtcctcactgcaatcttaatggggggagaatcacaacattggcttg Alignment from CESAR aaGGTGTTGACTTACGAGGTCCC-CCTGGCCCACCTGGCCCACGAGGGCCACCAg ggggctaatcagtcttctttttgatttatctctgtctcctctccttccagaaGGGGTTGGTTTACATGGCCCCCCCTGGCCCCTCTGGACCACGAGGACCGCCAggtaagtcctcactgcaatcttaatggggggagaatcacatgtttttttct Alignment from Spaln_aa2Genome GGTGTTGACTTACGAGGTCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAG ggggctaatcagtcttctttttgatttatctctgtctcctctccttccagaagGGGTTGGTTTACATGGCCCCCCCTGGCCCCTCTGGACCACGAGGACCGCCAGgtaagtcctcactgcaatcttaatggggggagaatcacaacattggcttg Alignment from Spaln_nt2Genome AAGGTGTTGACTTACGAGGTCCCCC-TGGCCCACCTGGCCCACGAGGGCCACCAG ggggctaatcagtcttctttttgatttatctctgtctcctctccttccagAAGGGGTTGGTTTACATGGCCCCCCCTGGCCCCTCTGGACCACGAGGACCGCCAGgtaagtcctcactgcaatcttaatggggggagaatcacaacattggcttg Alignment from Pairagon AAGGTGTTGACTTACGAGG-TCCCCCTGGCCCACCTGGCCCACGAGGGCCACCAG ggggctaatcagtcttctttttgatttatctctgtctcctctccttccagAAGGGGTTGGTTTACATGGCCCCCCCTGGCCCCTCTGGACCACGAGGACCGCCAGgtaagtcctcactgcaatcttaatggggggagaatcacaacattggcttg Alignment from Exonerate_protein2genome AAGGTGTTGACTTACGAGGT-CCCCCTGGCCCACCTGGCCCACGAGGGCCACCAG ggggctaatcagtcttctttttgatttatctctgtctcctctccttccagAAGGGGTTGGTTTACATGGCCCCCCCTGGCCCCTCTGGACCACGAGGACCGCCAGgtaagtcctcactgcaatcttaatggggggagaatcacaacattggcttg Alignment from Exonerate_coding2genome AAGGTGTTGACTTACGAGGT-CCCCCTGGCCCACCTGGCCCACGAGGGCCACCAG ggggctaatcagtcttctttttgatttatctctgtctcctctccttccagAAGGGGTTGGTTTACATGGCCCCCCCTGGCCCCTCTGGACCACGAGGACCGCCAGgtaagtcctcactgcaatcttaatggggggagaatcacaacattggcttg Alignment from GeneWise ggggctaatcagtcttctttttgatttatctctgtctcctctccttccagaaggggttggtttacatggccccccctggcccctctggaccacgaggaccgccaggtaagtcctcactgcaatcttaatggggggagaatcacaacattggcttg #### Col17a1_ID10297_25 --> 2 - 1 Original Alignment gtGCTGTGGGTCCCCAAGGGCTC-CGAGGTGACGTGGGACTTCCTGGTGTCAAAg tgtgttgcatgatggggatgtaggatagacttatgggtgctaccccacaggtGCTGTGGGGACCCAGGGACTTCCGGGGTGATGTGGGACTGCCTGGTGTGAAAggtaggttagggagggaggggcaattaaatgttgaggggacgctcattcaa Alignment from CESAR gtGCTGTGGGTCCCCAAGGGCTC-CGAGGTGACGTGGGACTTCCTGGTGTCAAAg tgtgttgcatgatggggatgtaggatagacttatgggtgctaccccacaggtGCTGTGGGGACCCAGGGACTTCCGGGGTGATGTGGGACTGCCTGGTGTGAAAggtaggttagggagggaggggcaattaaatgttgaggggacgctcattcaa Alignment from Spaln_aa2Genome GTGCTGTGGGTCCCCAAGGGCTC-CGAGGTGACGTGGGACTTCCTGGTGTCAAAG tgtgttgcatgatggggatgtaggatagacttatgggtgctaccccacagGTGCTGTGGGGACCCAGGGACTTcCGGGGTGATGTGGGACTGCCTGGTGTGAAAGgtaggttagggagggaggggcaattaaatgttgaggggacgctcattcaa Alignment from Spaln_nt2Genome GTGCTGTGGGTCCCCAAGGGCT-CCGAGGTGACGTGGGACTTCCTGGTGTCAAAG tgtgttgcatgatggggatgtaggatagacttatgggtgctaccccacagGTGCTGTGGGGACCCAGGGACTTCCGGGGTGATGTGGGACTGCCTGGTGTGAAAGgtaggttagggagggaggggcaattaaatgttgaggggacgctcattcaa Alignment from Pairagon GTGCTGTGGGTCCCCAAGGGC-TCCGAGGTGACGTGGGACTTCCTGGTGTCAAAG tgtgttgcatgatggggatgtaggatagacttatgggtgctaccccacagGTGCTGTGGGGACCCAGGGACTTCCGGGGTGATGTGGGACTGCCTGGTGTGAAAGgtaggttagggagggaggggcaattaaatgttgaggggacgctcattcaa Alignment from Exonerate_protein2genome GTGCTGTGGGTCCCCAAGGGCTC-CGAGGTGACGTGGGACTTCCTGGTGTCAAAG tgtgttgcatgatggggatgtaggatagacttatgggtgctaccccacagGTGCTGTGGGGACCCAGGGACTTCCGGGGTGATGTGGGACTGCCTGGTGTGAAAGgtaggttagggagggaggggcaattaaatgttgaggggacgctcattcaa Alignment from Exonerate_coding2genome tgtgttgcatgatggggatgtaggatagacttatgggtgctaccccacaggtgctgtggggacccagggacttccggggtgatgtgggactgcctggtgtgaaaggtaggttagggagggaggggcaattaaatgttgaggggacgctcattcaa Alignment from GeneWise -------------------------GCTGTGGGTCCCCAAGGGCTCCGAGGTGACGTGGGACTTCCTGGTGTCAAAGGTGACAAAGGACTCATGGGACCACCAGGACCCAAAGGT tgtgttgcatgatggggatgtaggatagACTTATGGGTGCTACCCCACAGGTGCTGTGGGGACCCAGGGACTTCCGGGGTGATGTGGGACTGCCTGGTGTGAAA---------GGTAGGTTAGGGAGGGAGGGGCAATTAAATgttgaggggacgctcattcaa #### Col17a1_ID10300_22 --> 2 - 1 Original Alignment gaGATCCTGGCATGGAAGGACCCATA-GGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAg ctattctgtgctcttgcatctttcttgatgacactgcttccatttctcaggaGATCCTGGCATGGAGGCACCGATACGGCCAGAGAGGGTTAGCAGGTCCCATGGGACCCAGTGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAggtaggcgtcactatcaacaccataatggtgacctgcatccgttcattttc Alignment from CESAR gaGATCCTGGCATGGAAGGACCCATA-GGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAg ctattctgtgctcttgcatctttcttgatgacactgcttccatttctcaggaGATCCTGGCATGGAGGCACCGATACGGCCAGAGAGGGTTAGCAGGTCCCATGGGACCCAGTGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAggtaggcgtcactatcaacaccataatggtgacctgcatccgttcattttc Alignment from Spaln_aa2Genome GAGATCCTGGCATGGAAGGACCCATA-GGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG ctattctgtgctcttgcatctttcttgatgacactgcttccatttctcagGAGATCCTGGCATGGAGGCACCGATAcGGCCAGAGAGGGTTAGCAGGTCCCATGGGACCCAGTGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAGgtaggcgtcactatcaacaccataatggtgacctgcatccgttcattttc Alignment from Spaln_nt2Genome GAGATCCTGGCATGGAAGGACCCATAG-GCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG ctattctgtgctcttgcatctttcttgatgacactgcttccatttctcagGAGATCCTGGCATGGAGGCACCGATACGGCCAGAGAGGGTTAGCAGGTCCCATGGGACCCAGTGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAGgtaggcgtcactatcaacaccataatggtgacctgcatccgttcattttc Alignment from Pairagon GAGATCCTGGCATGGAAGGACCCATA-GGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG ctattctgtgctcttgcatctttcttgatgacactgcttccatttctcagGAGATCCTGGCATGGAGGCACCGATACGGCCAGAGAGGGTTAGCAGGTCCCATGGGACCCAGTGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAGgtaggcgtcactatcaacaccataatggtgacctgcatccgttcattttc Alignment from Exonerate_protein2genome GAGATCCTGGCATGGAAGGACCCATA-GGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG ctattctgtgctcttgcatctttcttgatgacactgcttccatttctcagGAGATCCTGGCATGGAGGCACCGATACGGCCAGAGAGGGTTAGCAGGTCCCATGGGACCCAGTGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAGgtaggcgtcactatcaacaccataatggtgacctgcatccgttcattttc Alignment from Exonerate_coding2genome GAGATCCTGGCATGGAAGGACCCATA-GGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG ctattctgtgctcttgcatctttcttgatgacactgcttccatttctcagGAGATCCTGGCATGGAGGCACCGATACGGCCAGAGAGGGTTAGCAGGTCCCATGGGACCCAGTGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAGgtaggcgtcactatcaacaccataatggtgacctgcatccgttcattttc Alignment from GeneWise GAGATCCTGGCATGGAAGGACCC-ATAGGCCAGAGAGGACTAGCAGGCCCCATGGGACCTCGTGGTGAACCCGGGCCTCCTGGGTCTGGAGAGAAAGGAGACAGAG ctattctgtgctcttgcatctttcttgatgacactgcttccatttctcagGAGATCCTGGCATGGAGGCACCGATACGGCCAGAGAGGGTTAGCAGGTCCCATGGGACCCAGTGGTGAACCAGGGCCTCCTGGATCTGGGGAGAAAGGAGACCAAGgtaggcgtcactatcaacaccataatggtgacctgcatccgttcattttc #### Coro1b_ID353_3 --> 0 - 1 Original Alignment GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC------AAGCGCGTGGGCATTATCACCTGG-CACCCCACAGCCCGAAATGTGCTTCTCAGTGCAg gagaccccttcttgatgatggacctgtctctttcttcttttatttttcagGTTTGGCAGATCCCAGAAAATGGGTTGACT---CCACTGACGGAGCCCGTAGTTGTGCCTGAGGGGCATACAATTAAACGACGTGTGGGTATTACTACTTGGCCATCCTACTGCCCAGATTGTGCTTCTTGGTGCTggtaagcatatgcctaaaccatgctctctactcttctccaaattgtagtcc Alignment from CESAR GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC------AAGCGCGTGGGCATTATCACCTGG-CACCCCACAGCCCGAAATGTGCTTCTCAGTGCAg gagaccccttcttgatgatggacctgtctctttcttcttttatttttcagGTTTGGCAGATCCCAGAAAATGGGTTGACT---CCACTGACGGAGCCCGTAGTTGTGCCTGAGGGGCATACAATTAAACGACGTGTGGGTATTACTACTTGGCCATCCTACTGCCCAGATTGTGCTTCTTGGTGCTggtaagcatatgcctaaaccatgctctctactcttctccaaattgtagtcc Alignment from Spaln_aa2Genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC------AAGCGCGTGGGCATTATCACCTGG-CACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG gagaccccttcttgatgatggacctgtctctttcttcttttatttttcagGTTTGGCAGATCCCAGAAAATGGGTTG---ACTCCACTGACGGAGCCCGTAGTTGTGCCTGAGGGGCATACAATTAAACGACGTGTGGGTATTACTACTTGGcCATCCTACTGCCCAGATTGTGCTTCTTGGTGCTGgtaagcatatgcctaaaccatgctctctactcttctccaaattgtagtcc Alignment from Spaln_nt2Genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACCAAG------CGCGTGGGCATTATCACCTGGC-ACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG gagaccccttcttgatgatggacctgtctctttcttcttttatttttcagGTTTGGCAGATCCCAGAAAATGGGTTGA---CTCCACTGACGGAGCCCGTAGTTGTGCCTGAGGGGCATACAATTAAACGACGTGTGGGTATTACTACTTGGCCATCCTACTGCCCAGATTGTGCTTCTTGGTGCTGgtaagcatatgcctaaaccatgctctctactcttctccaaattgtagtcc Alignment from Pairagon GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACCA------AGCGCGTGGGCATTATCACCTGG-CACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG gagaccccttcttgatgatggacctgtctctttcttcttttatttttcagGTTTGGCAGATCCCAGAAAATGGGTTGA---CTCCACTGACGGAGCCCGTAGTTGTGCCTGAGGGGCATACAATTAAACGACGTGTGGGTATTACTACTTGGCCATCCTACTGCCCAGATTGTGCTTCTTGGTGCTGgtaagcatatgcctaaaccatgctctctactcttctccaaattgtagtcc Alignment from Exonerate_protein2genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC------AAGCGCGTGGGCATTATCACCTGG-CACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG gagaccccttcttgatgatggacctgtctctttcttcttttatttttcagGTTTGGCAGATCCCAGAAAATGGGTTGACT---CCACTGACGGAGCCCGTAGTTGTGCCTGAGGGGCATACAATTAAACGACGTGTGGGTATTACTACTTGGCCATCCTACTGCCCAGATTGTGCTTCTTGGTGCTGgtaagcatatgcctaaaccatgctctctactcttctccaaattgtagtcc Alignment from Exonerate_coding2genome GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC------AAGCGCGTGGGCATTATCACCTGG-CACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG gagaccccttcttgatgatggacctgtctctttcttcttttatttttcagGTTTGGCAGATCCCAGAAAATGGGTTGACT---CCACTGACGGAGCCCGTAGTTGTGCCTGAGGGGCATACAATTAAACGACGTGTGGGTATTACTACTTGGCCATCCTACTGCCCAGATTGTGCTTCTTGGTGCTGgtaagcatatgcctaaaccatgctctctactcttctccaaattgtagtcc Alignment from GeneWise GTATGGCAGATTCCAGAAAATGGGCTGACCTCCCCTCTGACAGAGCCAGTAGTGGTGCTCGAGGGGCATACC------AAGCGCGTGGGCATTATCACCTGG-CACCCCACAGCCCGAAATGTGCTTCTCAGTGCAG gagaccccttcttgatgatggacctgtctctttcttcttttatttttcagGTTTGGCAGATCCCAGAAAATGGGTTGACT---CCACTGACGGAGCCCGTAGTTGTGCCTGAGGGGCATACAATTAAACGACGTGTGGGTATTACTACTTGGCCATCCTACTGCCCAGATTGTGCTTCTTGGTGCTGgtaagcatatgcctaaaccatgctctctactcttctccaaattgtagtcc #### Coro1b_ID357_7 --> 0 - 2 Original Alignment GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGG-GGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCag ggatactaatgaagcatttctttgactgccaccatgggttgcttctctagGGTGATTCTAGTATTCGATACTTTGAGAATACAGATGAACCC---CACATCCATTTTTTGAACACATTTGCAAGCAAAGAACCCCAAAGGCGGTATGGGCAGCATGCTGAAGAGGGGCCTGGCAGTCAGCAAGTGTGAAATAGCCaggtaagtacaatcagtggttgtatatcagtgtcgtacctcaatcttagctt Alignment from CESAR GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGG-GGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCag ggatactaatgaagcatttctttgactgccaccatgggttgcttctctagGGTGATTCTAGTATTCGATACTTTGAGAATACAGATGAA---CCCCACATCCATTTTTTGAACACATTTGCAAGCAAAGAACCCCAAAGGCGGTATGGGCAGCATGCTGAAGAGGGGCCTGGCAGTCAGCAAGTGTGAAATAGCCaggtaagtacaatcagtggttgtatatcagtgtcgtacctcaatcttagctt Alignment from Spaln_aa2Genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGG-GGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG ggatactaatgaagcatttctttgactgccaccatgggttgcttctctagGGTGATTCTAGTATTCGATACTTTGAGAATACAGATGAA---CCCCACATCCATTTTTTGAACACATTTGCAAGCAAAGAACCCCAAAGGcGGTATGGGCAGCATGCTGAAGAGGGGCCTGGCAGTCAGCAAGTGTGAAATAGCCAGgtaagtacaatcagtggttgtatatcagtgtcgtacctcaatcttagctt Alignment from Spaln_nt2Genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGG-GGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG ggatactaatgaagcatttctttgactgccaccatgggttgcttctctagGGTGATTCTAGTATTCGATACTTTGAGAATACAGATGAACCCC---ACATCCATTTTTTGAACACATTTGCAAGCAAAGAACCCCAAAGGCGGTATGGGCAGCATGCTGAAGAGGGGCCTGGCAGTCAGCAAGTGTGAAATAGCCAGgtaagtacaatcagtggttgtatatcagtgtcgtacctcaatcttagctt Alignment from Pairagon GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGG-GGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG ggatactaatgaagcatttctttgactgccaccatgggttgcttctctagGGTGATTCTAGTATTCGATACTTTGAGAATACAGATGAACCCC---ACATCCATTTTTTGAACACATTTGCAAGCAAAGAACCCCAAAGGCGGTATGGGCAGCATGCTGAAGAGGGGCCTGGCAGTCAGCAAGTGTGAAATAGCCAGgtaagtacaatcagtggttgtatatcagtgtcgtacctcaatcttagctt Alignment from Exonerate_protein2genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGG-GGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG ggatactaatgaagcatttctttgactgccaccatgggttgcttctctagGGTGATTCTAGTATTCGATACTTTGAGAATACAGATGAA---CCCCACATCCATTTTTTGAACACATTTGCAAGCAAAGAACCCCAAAGGCGGTATGGGCAGCATGCTGAAGAGGGGCCTGGCAGTCAGCAAGTGTGAAATAGCCAGgtaagtacaatcagtggttgtatatcagtgtcgtacctcaatcttagctt Alignment from Exonerate_coding2genome GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAGAGG-GGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG ggatactaatgaagcatttctttgactgccaccatgggttgcttctctagGGTGATTCTAGTATTCGATACTTTGAGAATACAGATGAA---CCCCACATCCATTTTTTGAACACATTTGCAAGCAAAGAACCCCAAAGGCGGTATGGGCAGCATGCTGAAGAGGGGCCTGGCAGTCAGCAAGTGTGAAATAGCCAGgtaagtacaatcagtggttgtatatcagtgtcgtacctcaatcttagctt Alignment from GeneWise GGCGATTCCAGCATCCGGTACTTTGAGATCACAGATGAGCCCCCCTACATCCACTTCCTGAATACATTTACCAGCAAAGAACCCCAG-AGGGGTATGGGCAGCATGCCTAAGAGGGGCTTGGAGGTCAGCAAGTGTGAAATTGCCAG ggatactaatgaagcatttctttgactgccaccatgggttgcttctctagGGTGATTCTAGTATTCGATACTTTGAGAATACAGATGAACCC---CACATCCATTTTTTGAACACATTTGCAAGCAAAGAACCCCAAAGGCGGTATGGGCAGCATGCTGAAGAGGGGCCTGGCAGTCAGCAAGTGTGAAATAGCCAGgtaagtacaatcagtggttgtatatcagtgtcgtacctcaatcttagctt #### Csf2ra_ID13431_9 --> 2 - 2 Original Alignment agGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCA-GTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGag acaggaacagacaacttccagattgccaccctcccccaactgcgctccagatGCAGATGACACACGGGTGCCTGGCACACTCCTCTACACAGTAACTGCCTGTGCTCGTCCTGCTGTGTGCACTGGTGCTCGGAGTGACTTGCAGGaggtaggtcaaaggggcaatatcatgaacaaggcgtgtaaacagtcggttac Alignment from CESAR agGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCA-GTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGag acaggaacagacaacttccagattgccaccctcccccaactgcgctccagatGCAGATGACACACGGGTGCCTGGCACACTCCTCTACACAGTAACTGCCTGTGCTCGTCCTGCTGTGTGCACTGGTGCTCGGAGTGACTTGCAGGaggtaggtcaaaggggcaatatcatgaacaaggcgtgtaaacagtcggttac Alignment from Spaln_aa2Genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCA-GTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acaggaacagacaacttccagattgccaccctcccccaactgcgctccagATGCAGATGACACACGGGTGCCTGGCACACTCCTCTACACAGTAACTGCCTGTGCTcGTCCTGCTGTGTGCACTGGTGCTCGGAGTGACTTGCAGGAGgtaggtcaaaggggcaatatcatgaacaaggcgtgtaaacagtcggttac Alignment from Spaln_nt2Genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCA-GTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acaggaacagacaacttccagattgccaccctcccccaactgcgctccagATGCAGATGACACACGGGTGCCTGGCACACTCCTCTACACAGTAACTGCCTGTGCTCGTCCTGCTGTGTGCACTGGTGCTCGGAGTGACTTGCAGGAGgtaggtcaaaggggcaatatcatgaacaaggcgtgtaaacagtcggttac Alignment from Pairagon AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGC-AGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acaggaacagacaacttccagattgccaccctcccccaactgcgctccagATGCAGATGACACACGGGTGCCTGGCACACTCCTCTACACAGTAACTGCCTGTGCTCGTCCTGCTGTGTGCACTGGTGCTCGGAGTGACTTGCAGGAGgtaggtcaaaggggcaatatcatgaacaaggcgtgtaaacagtcggttac Alignment from Exonerate_protein2genome AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGCGCA-GTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acaggaacagacaacttccagattgccaccctcccccaactgcgctccagATGCAGATGACACACGGGTGCCTGGCACACTCCTCTACACAGTAACTGCCTGTGCTCGTCCTGCTGTGTGCACTGGTGCTCGGAGTGACTTGCAGGAGgtaggtcaaaggggcaatatcatgaacaaggcgtgtaaacagtcggttac Alignment from Exonerate_coding2genome acaggaacagacaacttccagattgccaccctcccccaactgcgctccagatgcagatgacacacgggtgcctggcacactcctctacacagtaactgcctgtgctcgtcctgctgtgtgcactggtgctcggagtgacttgcaggaggtaggtcaaaggggcaatatcatgaacaaggcgtgtaaacagtcggttac Alignment from GeneWise AGGCTGAGGACACGCGAGTGCCCGGTGCGCTCCTGTATGCAGTGACAGCCTGC-GCAGTCCTACTGTGCGCGCTGGCGCTCGGAGTGACGTGCAGGAG acaggaacagacaacttccagattgccaccctcccccaactgcgctccagATGCAGATGACACACGGGTGCCTGGCACACTCCTCTACACAGTAACTGCCTGTGCTCGTCCTGCTGTGTGCACTGGTGCTCGGAGTGACTTGCAGGAGgtaggtcaaaggggcaatatcatgaacaaggcgtgtaaacagtcggttac #### Csf2ra_ID13433_7 --> 0 - 0 Original Alignment AGCGCAGAGCCA-GGAAGCACACCCCGGAAG tatgcccatagctgacaaaattcacagcccctcctttctctttattatagAGCGCAGAACCACGGAAGCACACCTCGGCAGgtaccatggctcgatgtagcatatggcctggattctattatggtagcaca Alignment from CESAR AGCGCAGAGCCA-GGAAGCACACCCCGGAAG tatgcccatagctgacaaaattcacagcccctcctttctctttattatagAGCGCAGAACCACGGAAGCACACCTCGGCAGgtaccatggctcgatgtagcatatggcctggattctattatggtagcaca Alignment from Spaln_aa2Genome AGCGCAGAGCCAGGAAGCACACCCCGGAAG tatgcccatagctgacaaaattcacagcccctcctttctctttattatagagcgcagAAC------CACGGAAGCACACCTCGGCAGgtaccatggctcgatgtagcatatggcctggattctattatggtagcaca Alignment from Spaln_nt2Genome AGCGCAGAGCCA-GGAAGCACACCCCGGAAG tatgcccatagctgacaaaattcacagcccctcctttctctttattatagAGCGCAGAACCACGGAAGCACACCTCGGCAGgtaccatggctcgatgtagcatatggcctggattctattatggtagcaca Alignment from Pairagon AGCGCAGAGCCA-GGAAGCACACCCCGGAAG tatgcccatagctgacaaaattcacagcccctcctttctctttattatagAGCGCAGAACCACGGAAGCACACCTCGGCAGgtaccatggctcgatgtagcatatggcctggattctattatggtagcaca Alignment from Exonerate_protein2genome AGCGCAGAGCCA-GGAAGCACACCCCGGAAG tatgcccatagctgacaaaattcacagcccctcctttctctttattatagAGCGCAGAACCACGGAAGCACACCTCGGCAGgtaccatggctcgatgtagcatatggcctggattctattatggtagcaca Alignment from Exonerate_coding2genome tatgcccatagctgacaaaattcacagcccctcctttctctttattatagagcgcagaaccacggaagcacacctcggcaggtaccatggctcgatgtagcatatggcctggattctattatggtagcaca Alignment from GeneWise tatgcccatagctgacaaaattcacagcccctcctttctctttattatagagcgcagaaccacggaagcacacctcggcaggtaccatggctcgatgtagcatatggcctggattctattatggtagcaca #### Csf2ra_ID13435_5 --> 1 - 1 Original Alignment gGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGG-TTCCTGGACGACGTGGTGGCTACGAAGGCGCTCg ttcattactacctcattgctgtctctcatgtggaaatggttttgttgtagaGGTCATGATGTAGCACACTGCATGGCTGATCCTGGGGATGATGTAATCACCCAGTGCATTGCAAATGATTTATCCCTGCTGGGGAGTGAGGCCTATTTAGTCGTTACTGGTCGAAGTGGGGCAGGGCCAGTGTGGCTTTCTGGATGATGTGGTCGCTACAAAGGCACTGggtctgcctttgtttatgggtacatgtagggcttctcagtcacagcttgga Alignment from CESAR gGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGG-TTCCTGGACGACGTGGTGGCTACGAAGGCGCTCg ttcattactacctcattgctgtctctcatgtggaaatggttttgttgtagaGGTCATGATGTAGCACACTGCATGGCTGATCCTGGGGATGATGTAATCACCCAGTGCATTGCAAATGATTTATCCCTGCTGGGGAGTGAGGCCTATTTAGTCGTTACTGGTCGAAGTGGGGCAGGGCCAGTGTGGCTTTCTGGATGATGTGGTCGCTACAAAGGCACTGggtctgcctttgtttatgggtacatgtagggcttctcagtcacagcttgga Alignment from Spaln_aa2Genome GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTG-CGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG ttcattactacctcattgctgtctctcatgtggaaatggttttgttgtagAGGTCATGATGTAGCACACTGCATGGCTGATCCTGGGGATGATGTAATCACCCAGTGCATTGCAAATGATTTATCCCTGCTGGGGAGTGAGGCCTATTTAGTCGTTACTGGTCGAAGTGGGGCAGGGCCAGTGtGGCTTTCTGGATGATGTGGTCGCTACAAAGGCACTGGgtctgcctttgtttatgggtacatgtagggcttctcagtcacagcttgga Alignment from Spaln_nt2Genome GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGG-TTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG ttcattactacctcattgctgtctctcatgtggaaatggttttgttgtagAGGTCATGATGTAGCACACTGCATGGCTGATCCTGGGGATGATGTAATCACCCAGTGCATTGCAAATGATTTATCCCTGCTGGGGAGTGAGGCCTATTTAGTCGTTACTGGTCGAAGTGGGGCAGGGCCAGTGTGGCTTTCTGGATGATGTGGTCGCTACAAAGGCACTGGgtctgcctttgtttatgggtacatgtagggcttctcagtcacagcttgga Alignment from Pairagon GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTGCGG-TTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG ttcattactacctcattgctgtctctcatgtggaaatggttttgttgtagAGGTCATGATGTAGCACACTGCATGGCTGATCCTGGGGATGATGTAATCACCCAGTGCATTGCAAATGATTTATCCCTGCTGGGGAGTGAGGCCTATTTAGTCGTTACTGGTCGAAGTGGGGCAGGGCCAGTGTGGCTTTCTGGATGATGTGGTCGCTACAAAGGCACTGGgtctgcctttgtttatgggtacatgtagggcttctcagtcacagcttgga Alignment from Exonerate_protein2genome GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTG-CGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG ttcattactacctcattgctgtctctcatgtggaaatggttttgttgtagAGGTCATGATGTAGCACACTGCATGGCTGATCCTGGGGATGATGTAATCACCCAGTGCATTGCAAATGATTTATCCCTGCTGGGGAGTGAGGCCTATTTAGTCGTTACTGGTCGAAGTGGGGCAGGGCCAGTGTGGCTTTCTGGATGATGTGGTCGCTACAAAGGCACTGGgtctgcctttgtttatgggtacatgtagggcttctcagtcacagcttgga Alignment from Exonerate_coding2genome GGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTG-CGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG ttcattactacctcattgctgtctctcatgtggaaatggttttgttgtagaGGTCATGATGTAGCACACTGCATGGCTGATCCTGGGGATGATGTAATCACCCAGTGCATTGCAAATGATTTATCCCTGCTGGGGAGTGAGGCCTATTTAGTCGTTACTGGTCGAAGTGGGGCAGGGCCAGTGTGGCTTTCTGGATGATGTGGTCGCTACAAAGGCACTGGgtctgcctttgtttatgggtacatgtagggcttctcagtcacagcttgga Alignment from GeneWise GGGTCACGACGTGGCGCGATGCATGGCCGACCCCGGGGATGACGTCATCACACAGTGCATTGCGAACGACTTGTCACTGCTGGGGAGTGAGGCCTACTTGGTCGTGACCGGTCGGAGCGGTGCGGGGCCAGTG-CGGTTCCTGGACGACGTGGTGGCTACGAAGGCGCTCG ttcattactacctcattgctgtctctcatgtggaaatggttttgttgtagAGGTCATGATGTAGCACACTGCATGGCTGATCCTGGGGATGATGTAATCACCCAGTGCATTGCAAATGATTTATCCCTGCTGGGGAGTGAGGCCTATTTAGTCGTTACTGGTCGAAGTGGGGCAGGGCCAGTGTGGCTTTCTGGATGATGTGGTCGCTACAAAGGCACTGGgtctgcctttgtttatgggtacatgtagggcttctcagtcacagcttgga #### Csf2ra_ID13437_3 --> 0 - 1 Original Alignment CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTG-AGCTTCGTCAACGAAg ataggactctcagtgcattacctcaccccttccatgtctggattccctagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACTGGACGTCAATGGCACAGTTGGAGGTGCAGCCGCGCACTGGAAGCTCCAGCTTTGTCAATGAGggtattggtggatgttgggggttccatgatacccttactacaaagctatca Alignment from CESAR CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTG-AGCTTCGTCAACGAAg ataggactctcagtgcattacctcaccccttccatgtctggattccctagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACTGGACGTCAATGGCACAGTTGGAGGTGCAGCCGCGCACTGGAAGCTCCAGCTTTGTCAATGAGggtattggtggatgttgggggttccatgatacccttactacaaagctatca Alignment from Spaln_aa2Genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTG-AGCTTCGTCAACGAAG ataggactctcagtgcattacctcaccccttccatgtctggattccctagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACTGGACGTCAATGGCACAGTTGGAGGTGCAGCCGCGCACTGGAAGCTCcAGCTTTGTCAATGAGGgtattggtggatgttgggggttccatgatacccttactacaaagctatca Alignment from Spaln_nt2Genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTG-AGCTTCGTCAACGAAG ataggactctcagtgcattacctcaccccttccatgtctggattccctagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACTGGACGTCAATGGCACAGTTGGAGGTGCAGCCGCGCACTGGAAGCTCCAGCTTTGTCAATGAGGgtattggtggatgttgggggttccatgatacccttactacaaagctatca Alignment from Pairagon CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCT-GAGCTTCGTCAACGAAG ataggactctcagtgcattacctcaccccttccatgtctggattccctagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACTGGACGTCAATGGCACAGTTGGAGGTGCAGCCGCGCACTGGAAGCTCCAGCTTTGTCAATGAGGgtattggtggatgttgggggttccatgatacccttactacaaagctatca Alignment from Exonerate_protein2genome CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTG-AGCTTCGTCAACGAAG ataggactctcagtgcattacctcaccccttccatgtctggattccctagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACTGGACGTCAATGGCACAGTTGGAGGTGCAGCCGCGCACTGGAAGCTCCAGCTTTGTCAATGAGGgtattggtggatgttgggggttccatgatacccttactacaaagctatca Alignment from Exonerate_coding2genome ataggactctcagtgcattacctcaccccttccatgtctggattccctagccctttggttgccgctgctggttcagaaggatgatggcactgcaccatggtgtaacactggacgtcaatggcacagttggaggtgcagccgcgcactggaagctccagctttgtcaatgagggtattggtggatgttgggggttccatgatacccttactacaaagctatca Alignment from GeneWise CCCTTCGGTTGCCGCTGCTGGTTCAGGAGGATGATGGCGCTGCACCACGGTGTCACGCTGGATGTCAATGGCACGGTCGGGGGCGCGGCCGCGCACTGGAGGCTGAGCTTCG ataggactctcagtgcattacctcaccccttccatgtctggattccctagCCCTTTGGTTGCCGCTGCTGGTTCAGAAGGATGATGGCACTGCACCATGGTGTAACACTGGACGTCAATGGCACAGTTGGAGGTGCAGCCGCGCACTGGAAGCTCCAGCTTTgtcaatgagggtattggtggatgttgggggttccatgatacccttactacaaagctatca #### Csf2ra_ID13438_2 --> 2 - 0 Original Alignment ctCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTG-ACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGC------ACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG ggtcctccaccactctctaccaagacagtttctgcacctctgtcttacagccCCAACCACCCCATATGTTGGCTCTGCCCTCAACCTGATCTTTGACCCCTGGACCCGGATGCTGCACCTGGGCTTGCGATACTGCTGCAGAGAATGTCATGGTGATGTCATGCACTGTGACTGTTACCTCACGGGAAGCATCGATACACCGGCGAGTGTCAgtagggaggtaagataagaggctatgcctaataatgccatgatgcccaat Alignment from CESAR ctCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTG-ACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGCACCGTG------ACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG ggtcctccaccactctctaccaagacagtttctgcacctctgtcttacagccCCAACCACCCCATATGTTGGCTCTGCCCTCAACCTGATCTTTGACCCCTGGACCCGGATGCTGCACCTGGGCTTGCGATACTGCTGCAGAGAATGTCATGGTGATGTCATGCACTGTGACTGTTACCTCACGGGAAGCATCGATACACCGGCGAGTGTCAgtagggaggtaagataagaggctatgcctaataatgccatgatgcccaat Alignment from Spaln_aa2Genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTG-ACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGC------ACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG ggtcctccaccactctctaccaagacagtttctgcacctctgtcttacagCCCCAACCACCCCATATGTTGGCTCTGCCCTCAACCTGATCTTTGACCCCTGGACCCGGATGCTGcACCTGGGCTTGCGATACTGCTGCAGAGAATGTCATGGTGATGTCATGCACTGTGACTGTTACCTCACGGGAAGCATCGATACACCGGCGAGTGTCAgtagggaggtaagataagaggctatgcctaataatgccatgatgcccaat Alignment from Spaln_nt2Genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTG-ACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGCACCGTGAC------CTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG ggtcctccaccactctctaccaagacagtttctgcacctctgtcttacagCCCCAACCACCCCATATGTTGGCTCTGCCCTCAACCTGATCTTTGACCCCTGGACCCGGATGCTGCACCTGGGCTTGCGATACTGCTGCAGAGAATGTCATGGTGATGTCATGCACTGTGACTGTTACCTCACGGGAAGCATCGATACACCGGCGAGTGTCAgtagggaggtaagataagaggctatgcctaataatgccatgatgcccaat Alignment from Pairagon CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTG-ACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGCACCGTG------ACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG ggtcctccaccactctctaccaagacagtttctgcacctctgtcttacagCCCCAACCACCCCATATGTTGGCTCTGCCCTCAACCTGATCTTTGACCCCTGGACCCGGATGCTGCACCTGGGCTTGCGATACTGCTGCAGAGAATGTCATGGTGATGTCATGCACTGTGACTGTTACCTCACGGGAAGCATCGATACACCGGCGAGTGTCAgtagggaggtaagataagaggctatgcctaataatgccatgatgcccaat Alignment from Exonerate_protein2genome CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGGACGCTG-ACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGC------ACCGTGACCTCGCGGGAGGCGGGGATACACCGGCGAGTCTCG ggtcctccaccactctctaccaagacagtttctgcacctctgtcttacagCCCCAACCACCCCATATGTTGGCTCTGCCCTCAACCTGATCTTTGACCCCTGGACCCGGATGCTGCACCTGGGCTTGCGATACTGCTGCAGAGAATGTCATGGTGATGTCATGCACTGTGACTGTTACCTCACGGGAAGCATCGATACACCGGCGAGTGTCAgtagggaggtaagataagaggctatgcctaataatgccatgatgcccaat Alignment from Exonerate_coding2genome ggtcctccaccactctctaccaagacagtttctgcacctctgtcttacagccccaaccaccccatatgttggctctgccctcaacctgatctttgacccctggacccggatgctgcacctgggcttgcgatactgctgcagagaatgtcatggtgatgtcatgcactgtgactgttacctcacgggaagcatcgatacaccggcgagtgtcagtagggaggtaagataagaggctatgcctaataatgccatgatgcccaat Alignment from GeneWise CTCCGACCACACCGGACGCCGGCTCCGCCCTCAACCTGACCTTCGACCCCTGGACTCGG-ACGCTGACCTGGGCCTGCGACACCGCCGCGGGGAACGTCACGGTGACGTCATGCACCGTGACC------TCGCGGGAGGCGGGGATACACCGGCGAGTCTCG ggtcctccaccactctctaccaagacagtttctgcacctctgtcttacagCCCCAACCACCCCATATGTTGGCTCTGCCCTCAACCTGATCTTTGACCCCTGGACCCGGATGCTGCACCTGGGCTTGCGATACTGCTGCAGAGAATGTCATGGTGATGTCATGCACTGTGACTGTTACCTCACGGGAAGCATCGATACACCGGCGAGTGTCAgtagggaggtaagataagaggctatgcctaataatgccatgatgcccaat #### Ctsf_ID674_2 --> 0 - 0 Original Alignment GCCGGCCAGGGCTCTCTGTTCTCC-CTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaaggtgaaagggagtcttggccaatctttcattcctttcaatgaagGCTGGTCAGGGCTCCCTGTTTTCTCCTGGAATCCACACTAGATGAGCCACCTTGCAATGATCCTTTGGTGTGCTCGCTACCTGAAACAAAGAAGACCGTGgtaccctagtggttagattgttacagcccacctgtcaagacatgtctaac Alignment from CESAR GCCGGCCAGGGCTCTCTGTTCTCC-CTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaaggtgaaagggagtcttggccaatctttcattcctttcaatgaagGCTGGTCAGGGCTCCCTGTTTTCTCCTGGAATCCACACTAGATGAGCCACCTTGCAATGATCCTTTGGTGTGCTCGCTACCTGAAACAAAGAAGACCGTGgtaccctagtggttagattgttacagcccacctgtcaagacatgtctaac Alignment from Spaln_aa2Genome GCCGGCCAGGGCTCTCTGTTCTCC-CTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaaggtgaaagggagtcttggccaatctttcattcctttcaatgaagGCTGGTCAGGGCTCCCTGTTTTCTcCTGGAATCCACACTAGATGAGCCACCTTGCAATGATCCTTTGGTGTGCTCGCTACCTGAAACAAAGAAGACCGTGgtaccctagtggttagattgttacagcccacctgtcaagacatgtctaac Alignment from Spaln_nt2Genome GCCGGCCAGGGCTCTCTGTTCTC-CCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaaggtgaaagggagtcttggccaatctttcattcctttcaatgaagGCTGGTCAGGGCTCCCTGTTTTCTCCTGGAATCCACACTAGATGAGCCACCTTGCAATGATCCTTTGGTGTGCTCGCTACCTGAAACAAAGAAGACCGTGgtaccctagtggttagattgttacagcccacctgtcaagacatgtctaac Alignment from Pairagon GCCGGCCAGGGCTCTCTGTTCTC-CCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaaggtgaaagggagtcttggccaatctttcattcctttcaatgaagGCTGGTCAGGGCTCCCTGTTTTCTCCTGGAATCCACACTAGATGAGCCACCTTGCAATGATCCTTTGGTGTGCTCGCTACCTGAAACAAAGAAGACCGTGgtaccctagtggttagattgttacagcccacctgtcaagacatgtctaac Alignment from Exonerate_protein2genome GCCGGCCAGGGCTCTCTGTTCTCC-CTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaaggtgaaagggagtcttggccaatctttcattcctttcaatgaagGCTGGTCAGGGCTCCCTGTTTTCTCCTGGAATCCACACTAGATGAGCCACCTTGCAATGATCCTTTGGTGTGCTCGCTACCTGAAACAAAGAAGACCGTGgtaccctagtggttagattgttacagcccacctgtcaagacatgtctaac Alignment from Exonerate_coding2genome GCCGGCCAGGGCTCTCTGTTCTCC-CTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaaggtgaaagggagtcttggccaatctttcattcctttcaatgaagGCTGGTCAGGGCTCCCTGTTTTCTCCTGGAATCCACACTAGATGAGCCACCTTGCAATGATCCTTTGGTGTGCTCGCTACCTGAAACAAAGAAGACCGTGgtaccctagtggttagattgttacagcccacctgtcaagacatgtctaac Alignment from GeneWise GCCGGCCAGGGCTCTCTGTTC-TCCCTGGAAGCCACACTAGAGGAGCCACCTTGCAATGATCCCCTGGTGTGCCCACTGCCTGAGACGAAGAAAACAGTG agtaaaggtgaaagggagtcttggccaatctttcattcctttcaatgaagGCTGGTCAGGGCTCCCTGTTTTCTCCTGGAATCCACACTAGATGAGCCACCTTGCAATGATCCTTTGGTGTGCTCGCTACCTGAAACAAAGAAGACCGTGgtaccctagtggttagattgttacagcccacctgtcaagacatgtctaac #### Ctsf_ID679_7 --> 2 - 0 Original Alignment agGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGG-GCTGTCACTGAAGTG------AAGAACCAG gtgggtctggtttcaagcacttatctctacactttaacttaattcttaagagGAAGAAATCCATACCATCGACCTGATCCCTCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTTCAGCAAAATCCATAAATGACCTTGCTCCACCTGAATGGGATTGGAGGCAGAAAGGGCGCTGTCACTGAAGTTGAGGTGAAGAATGAAgtaattgtaacttgaaattgggagagggtgcaaggcctatagagctaacc Alignment from CESAR agGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGG-GCTGTCACTGAA------GTGAAGAACCAG gtgggtctggtttcaagcacttatctctacactttaacttaattcttaagagGAAGAAATCCATACCATCGACCTGATCCCTCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTTCAGCAAAATCCATAAATGACCTTGCTCCACCTGAATGGGATTGGAGGCAGAAAGGGCGCTGTCACTGAAGTTGAGGTGAAGAATGAAgtaattgtaacttgaaattgggagagggtgcaaggcctatagagctaacc Alignment from Spaln_aa2Genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGG-AAGAAAGGGGCTGTCACTGAAGTGAAG gtgggtctggtttcaagcacttatctctacactttaacttaattcttaagAGGAAGAAATCCATACCATCGACCTGATCCCTCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTTCAGCAAAATCCATAAATGACCTTGCTCCACCTGAATGGGATTGGAGGcAGAAAGGGCGCTGTCACTGAAGTTGAGgtgaagaatgaagtaattgtaacttgaaattgggagagggtgcaaggcctatagagctaacc Alignment from Spaln_nt2Genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGG-GCTGTCACTGAAGTGAAG gtgggtctggtttcaagcacttatctctacactttaacttaattcttaagAGGAAGAAATCCATACCATCGACCTGATCCCTCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTTCAGCAAAATCCATAAATGACCTTGCTCCACCTGAATGGGATTGGAGGCAGAAAGGGCGCTGTCACTGAAGTTGAGgtgaagaatgaagtaattgtaacttgaaattgggagagggtgcaaggcctatagagctaacc Alignment from Pairagon AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGGAAGAAAGGG-GCTGTCACTGAA------GTGAAGAACCAG gtgggtctggtttcaagcacttatctctacactttaacttaattcttaagAGGAAGAAATCCATACCATCGACCTGATCCCTCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTTCAGCAAAATCCATAAATGACCTTGCTCCACCTGAATGGGATTGGAGGCAGAAAGGGCGCTGTCACTGAAGTTGAGGTGAAGAATGAAgtaattgtaacttgaaattgggagagggtgcaaggcctatagagctaacc Alignment from Exonerate_protein2genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGG-AAGAAAGGGGCTGTCACTGAAGTGAAG gtgggtctggtttcaagcacttatctctacactttaacttaattcttaagAGGAAGAAATCCATACCATCGACCTGATCCCTCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTTCAGCAAAATCCATAAATGACCTTGCTCCACCTGAATGGGATTGGAGGCAGAAAGGGCGCTGTCACTGAAGTTGAGgtgaagaatgaagtaattgtaacttgaaattgggagagggtgcaaggcctatagagctaacc Alignment from Exonerate_coding2genome AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGG-AAGAAAGGGGCTGTCACTGAAGTGAAG gtgggtctggtttcaagcacttatctctacactttaacttaattcttaagAGGAAGAAATCCATACCATCGACCTGATCCCTCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTTCAGCAAAATCCATAAATGACCTTGCTCCACCTGAATGGGATTGGAGGCAGAAAGGGCGCTGTCACTGAAGTTGAGgtgaagaatgaagtaattgtaacttgaaattgggagagggtgcaaggcctatagagctaacc Alignment from GeneWise AGGAGGAATTCCACACCATCTACCTGAATCCCCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTCCAGCCAAGTCCATAAATGATCTTGCCCCGCCTGAATGGGACTGGAGG-AAGAAAGGGGCTGTCACTGAAGTG------AAGAACCAG gtgggtctggtttcaagcacttatctctacactttaacttaattcttaagAGGAAGAAATCCATACCATCGACCTGATCCCTCTCTTACAGAAGGAGTCTGGCAGGAAGATGAGTTCAGCAAAATCCATAAATGACCTTGCTCCACCTGAATGGGATTGGAGGCAGAAAGGGCGCTGTCACTGAAGTTGAGGTGAAGAATGAAgtaattgtaacttgaaattgggagagggtgcaaggcctatagagctaacc #### Ctsf_ID680_8 --> 0 - 1 Original Alignment GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTC-CTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGg cctcagagaaccctaatagagcactctgcccctacccccccgtgcctcagGGCAGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGG---CTTGATCCGAGGAACTCTGCTTTCCCTGTCAGAACAGggtaagtatcctgatccattctgtttttatcagacaaacccctccataggg Alignment from CESAR GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGg cctcagagaaccctaatagagcactctgcccctacccccccgtgcctcagGGCAGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGG--CTTGATCCGAGGAACTCTGCTTTCCCTGTCAGAACAGggtaagtatcctgatccattctgtttttatcagacaaacccctccataggg Alignment from Spaln_aa2Genome GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cctcagagaaccctaatagagcactctgcccctacccccccgtgcctcagGGCAGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGGC--TTGATCCGAGGAACTCTGCTTTCCCTGTCAGAACAGGgtaagtatcctgatccattctgtttttatcagacaaacccctccataggg Alignment from Spaln_nt2Genome GGCA---TGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cctcagagaaccctaatagagcactctgcccctacccccccgtgcctcagGGCAGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGGCT--TGATCCGAGGAACTCTGCTTTCCCTGTCAGAACAGGgtaagtatcctgatccattctgtttttatcagacaaacccctccataggg Alignment from Pairagon GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cctcagagaaccctaatagagcactctgcccctacccccccgtgcctcagGGCAGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGG--CTTGATCCGAGGAACTCTGCTTTCCCTGTCAGAACAGGgtaagtatcctgatccattctgtttttatcagacaaacccctccataggg Alignment from Exonerate_protein2genome TGAAGAACCAGGGCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAAC-CGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cctcagagaaccctaatagagcactctgcccctacccccccgTGCCTCAGGGCAGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGG---CTTGATCCGAGGAACTCTGCTTTCCCTGTCAGAACAGGgtaagtatcctgatccattctgtttttatcagacaaacccctccataggg Alignment from Exonerate_coding2genome TGAAGAACCAGGGCATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAAC-CGGGGGACTCTGCTCTCCCTGTCAGAGCAGG cctcagagaaccctaatagagcactctgcccctacccccccgTGCCTCAGGGCAGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGG---CTTGATCCGAGGAACTCTGCTTTCCCTGTCAGAACAGGgtaagtatcctgatccattctgtttttatcagacaaacccctccataggg Alignment from GeneWise GGC---ATGTGTGGCTCCTGCTGGGCCTTTTCTGTCACAGGCAACGTGGAGGGCCAGTGGTTCCTGAACCGGGGGACTCTGCTCTCCCTGTCAGAGCAG--------------------------------------------------- cctcagagaaccctaatagagcactctgcccctacccccccgtgcctcagGGCAGTATGTGCAGTTCCTGCTGGGCCTTCTCTGTCACTGGCAATGGGGAGGGCCAGTGGC--TTGATCCGAGGAACTCTGCTTTCCCTGTCAGAACAGGGTAAGTATCCTGATCCATTCTGTTTTTATCAGACAAACCCCTCCATAGGG #### Ctsf_ID682_10 --> 2 - 1 Original Alignment gaGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCA-AAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATa gtgggagagcttctgtagcaggtcatcacaactttggctgtttatttaaggaGGTCTGGAGACAGAGGACGACTACGGCTATCAGGGCCATGTTCAGACCTGTAACTTCTCGGCACAGATGGCACAAAGTCTACATCAATGATTCAGTGGAGCTGAGTCAAAATGAAAATagtaaaagagggctgccctaggcgactcagggttaacacaactgggcctct Alignment from CESAR gaGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCA-AAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATa gtgggagagcttctgtagcaggtcatcacaactttggctgtttatttaaggaGGTCTGGAGACAGAGGACGACTACGGCTATCAGGGCCATGTTCAGACCTGTAACTTCTCGGCACAGATGGCACAAAGTCTACATCAATGATTCAGTGGAGCTGAGTCAAAATGAAAATagtaaaagagggctgccctaggcgactcagggttaacacaactgggcctac Alignment from Spaln_aa2Genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCA-AAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA gtgggagagcttctgtagcaggtcatcacaactttggctgtttatttaagGAGGTCTGGAGACAGAGGACGACTACGGCTATCAGGGCCATGTTCAGACCTGTAACTTCTCGGCACAGATGGCAcAAAGTCTACATCAATGATTCAGTGGAGCTGAGTCAAAATGAAAATAgtaaaagagggctgccctaggcgactcagggttaacacaactgggcctct Alignment from Spaln_nt2Genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCA-AAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA gtgggagagcttctgtagcaggtcatcacaactttggctgtttatttaagGAGGTCTGGAGACAGAGGACGACTACGGCTATCAGGGCCATGTTCAGACCTGTAACTTCTCGGCACAGATGGCACAAAGTCTACATCAATGATTCAGTGGAGCTGAGTCAAAATGAAAATAgtaaaagagggctgccctaggcgactcagggttaacacaactgggcctct Alignment from Pairagon GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCA-AAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA gtgggagagcttctgtagcaggtcatcacaactttggctgtttatttaagGAGGTCTGGAGACAGAGGACGACTACGGCTATCAGGGCCATGTTCAGACCTGTAACTTCTCGGCACAGATGGCACAAAGTCTACATCAATGATTCAGTGGAGCTGAGTCAAAATGAAAATAgtaaaagagggctgccctaggcgactcagggttaacacaactgggcctct Alignment from Exonerate_protein2genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCA-AAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA gtgggagagcttctgtagcaggtcatcacaactttggctgtttatttaagGAGGTCTGGAGACAGAGGACGACTACGGCTATCAGGGCCATGTTCAGACCTGTAACTTCTCGGCACAGATGGCACAAAGTCTACATCAATGATTCAGTGGAGCTGAGTCAAAATGAAAATAgtaaaagagggctgccctaggcgactcagggttaacacaactgggcctct Alignment from Exonerate_coding2genome GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATGGCA-AAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA gtgggagagcttctgtagcaggtcatcacaactttggctgtttatttaagGAGGTCTGGAGACAGAGGACGACTACGGCTATCAGGGCCATGTTCAGACCTGTAACTTCTCGGCACAGATGGCACAAAGTCTACATCAATGATTCAGTGGAGCTGAGTCAAAATGAAAATAgtaaaagagggctgccctaggcgactcagggttaacacaactgggcctct Alignment from GeneWise GAGGGCTGGAGACAGAGGATGACTACGGCTACCAGGGCCATGTTCAGACCTGCAACTTCTCAGCACAGATG-GCAAAAGTCTACATCAATGATTCAGTGGAGCTGAGCCGGAATGAAAATA gtgggagagcttctgtagcaggtcatcacaactttggctgtttatttaagGAGGTCTGGAGACAGAGGACGACTACGGCTATCAGGGCCATGTTCAGACCTGTAACTTCTCGGCACAGATGGCACAAAGTCTACATCAATGATTCAGTGGAGCTGAGTCAAAATGAAAATAgtaaaagagggctgccctaggcgactcagggttaacacaactgggcctct #### Ctsw_ID1017_9 --> 0 - 0 Original Alignment CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTC------TTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGG-ACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG aagtcaatacagggatctcattgtacagcagatttgttctttcattctagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGTTCCTGTGACCCTCGCCAAGAAGACCACCCTGTATTGCTCTTGCTGGTGGGTTTTGGTAAGAAGGAAGAGGGCATGCAAATGGGGCACAGTCTTAGCACATTCTCATAAGCGTTGCCATTCCTTCTCATTCTGGGTCTTGAAAAACTCTTGGGGAGCCCACTGGGGTGAGAAGgtaagtgtgcagaaaagcaatgaagcgcagaaaagcaatgaagcagagac Alignment from CESAR CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTC------TTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGG-ACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG aagtcaatacagggatctcattgtacagcagatttgttctttcattctagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGTTCCTGTGACCCTCGCCAAGAAGACCACCCTGTATTGCTCTTGCTGGTGGGTTTTGGTAAGAAGGAAGAGGGCATGCAAATGGGGCACAGTCTTAGCACATTCTCATAAGCGTTGCCATTCCTTCTCATTCTGGGTCTTGAAAAACTCTTGGGGAGCCCACTGGGGTGAGAAGgtaagtgtgcagaaaagcaatgaagcgcagaaaagcaatgaagcagagac Alignment from Spaln_aa2Genome CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTC------TTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACA-GGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG aagtcaatacagggatctcattgtacagcagatttgttctttcattctagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGTTCCTGTGACCCTCGCCAAGAAGACCACCCTGTATTGCTCTTGCTGGTGGGTTTTGGTAAGAAGGAAGAGGGCATGCAAATGgGGCACAGTCTTAGCACATTCTCATAAGCGTTGCCATTCCTTCTCATTCTGGGTCTTGAAAAACTCTTGGGGAGCCCACTGGGGTGAGAAGgtaagtgtgcagaaaagcaatgaagcgcagaaaagcaatgaagcagagac Alignment from Spaln_nt2Genome CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTC------TTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGG-ACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG aagtcaatacagggatctcattgtacagcagatttgttctttcattctagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGTTCCTGTGACCCTCGCCAAGAAGACCACCCTGTATTGCTCTTGCTGGTGGGTTTTGGTAAGAAGGAAGAGGGCATGCAAATGGGGCACAGTCTTAGCACATTCTCATAAGCGTTGCCATTCCTTCTCATTCTGGGTCTTGAAAAACTCTTGGGGAGCCCACTGGGGTGAGAAGgtaagtgtgcagaaaagcaatgaagcgcagaaaagcaatgaagcagagac Alignment from Pairagon CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTG------TCTTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACAGGG-ACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG aagtcaatacagggatctcattgtacagcagatttgttctttcattctagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGTTCCTGTGACCCTCGCCAAGAAGACCACCCTGTATTGCTCTTGCTGGTGGGTTTTGGTAAGAAGGAAGAGGGCATGCAAATGGGGCACAGTCTTAGCACATTCTCATAAGCGTTGCCATTCCTTCTCATTCTGGGTCTTGAAAAACTCTTGGGGAGCCCACTGGGGTGAGAAGgtaagtgtgcagaaaagcaatgaagcgcagaaaagcaatgaagcagagac Alignment from Exonerate_protein2genome CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTC------TTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACA-GGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG aagtcaatacagggatctcattgtacagcagatttgttctttcattctagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGTTCCTGTGACCCTCGCCAAGAAGACCACCCTGTATTGCTCTTGCTGGTGGGTTTTGGTAAGAAGGAAGAGGGCATGCAAATGGGGCACAGTCTTAGCACATTCTCATAAGCGTTGCCATTCCTTCTCATTCTGGGTCTTGAAAAACTCTTGGGGAGCCCACTGGGGTGAGAAGgtaagtgtgcagaaaagcaatgaagcgcagaaaagcaatgaagcagagac Alignment from Exonerate_coding2genome CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTC------TTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAGACA-GGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG aagtcaatacagggatctcattgtacagcagatttgttctttcattctagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGTTCCTGTGACCCTCGCCAAGAAGACCACCCTGTATTGCTCTTGCTGGTGGGTTTTGGTAAGAAGGAAGAGGGCATGCAAATGGGGCACAGTCTTAGCACATTCTCATAAGCGTTGCCATTCCTTCTCATTCTGGGTCTTGAAAAACTCTTGGGGAGCCCACTGGGGTGAGAAGgtaagtgtgcagaaaagcaatgaagcgcagaaaagcaatgaagcagagac Alignment from GeneWise CATTACCAGAAGGGTGTCATCAAGGCTACACCCAGCTCCTGTGACCCTCGGCAAGTGGACCACTCTGTCTTGCTG------GTGGGCTTTGGCAAGGAGAAAGAGGGCATGCAG-ACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTCCTGGGGAGCTCACTGGGGCGAGAAG aagtcaatacagggatctcattgtacagcagatttgttctttcattctagTATTATCAGAAAGGTGTCATCAAGGCTACACCCAGTTCCTGTGACCCTCGCCAAGAAGACCACCCTGTATTGCTCTTGCTGGTGGGTTTTGGTAAGAAGGAAGAGGGCATGCAAATGGGGCACAGTCTTAGCACATTCTCATAAGCGTTGCCATTCCTTCTCATTCTGGGTCTTGAAAAACTCTTGGGGAGCCCACTGGGGTGAGAAGgtaagtgtgcagaaaagcaatgaagcgcagaaaagcaatgaagcagagac #### Cyp17a1_ID9993_7 --> 1 - 1 Original Alignment cATTGGAGAGTTTGCCATCCCGAAGGACACACATGTGATCATCAATCTCTGG-GCACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTg tgactctcattgactaaattaactatttttcttttttgctttgtcttcagtATTGGAGAGTATGCCATCCTAAAAGATACTCATGTAATCATCAACCTGTGGCGCACTGCATCATGACAAAAATGAA---TATCAGGCAGATCAGTTCATGCCTggtgaccccctgtccactccatgctgactcctgtaccatccagtttcccgc Alignment from CESAR cATTGGAGAGTTTGCCATCCCGAAGGACACACATGTGATCATCAATCTCTGG-GCACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTg tgactctcattgactaaattaactatttttcttttttgctttgtcttcagtATTGGAGAGTATGCCATCCTAAAAGATACTCATGTAATCATCAACCTGTGGCGCACTGCATCATGACAAAAATGAATAT---CAGGCAGATCAGTTCATGCCTggtgaccccctgtccactccatgctgactcctgtaccatccagtttcccgc Alignment from Spaln_aa2Genome CATTGGAGAGTTTGCCATCCCGAAGGACACACATGTGATCATCAATCTCTGG-GCACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTG tgactctcattgactaaattaactatttttcttttttgctttgtcttcagTATTGGAGAGTATGCCATCCTAAAAGATACTCATGTAATCATCAACCTGTGGcGCACTGCATCATGACAAAAATGAATAT---CAGGCAGATCAGTTCATGCCTGgtgaccccctgtccactccatgctgactcctgtaccatccagtttcccgc Alignment from Spaln_nt2Genome CATTGGAGAGTTTGCCATCCCGAAGGACACACATGTGATCATCAATCTCTGG-GCACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTG tgactctcattgactaaattaactatttttcttttttgctttgtcttcagTATTGGAGAGTATGCCATCCTAAAAGATACTCATGTAATCATCAACCTGTGGCGCACTGCATCATGACAAAAATGAAT---ATCAGGCAGATCAGTTCATGCCTGgtgaccccctgtccactccatgctgactcctgtaccatccagtttcccgc Alignment from Pairagon CATTGGAGAGTTTGCCATCCCGAAGGACACACATGTGATCATCAATCTCTGG-GCACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTG tgactctcattgactaaattaactatttttcttttttgctttgtcttcagTATTGGAGAGTATGCCATCCTAAAAGATACTCATGTAATCATCAACCTGTGGCGCACTGCATCATGACAAAAATGAAT---ATCAGGCAGATCAGTTCATGCCTGgtgaccccctgtccactccatgctgactcctgtaccatccagtttcccgc Alignment from Exonerate_protein2genome CATTGGAGAGTTTGCCATCCCGAAGGACACACATGTGATCATCAATCTCTGG-GCACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTG tgactctcattgactaaattaactatttttcttttttgctttgtcttcagTATTGGAGAGTATGCCATCCTAAAAGATACTCATGTAATCATCAACCTGTGGCGCACTGCATCATGACAAAAATGAATAT---CAGGCAGATCAGTTCATGCCTGgtgaccccctgtccactccatgctgactcctgtaccatccagtttcccgc Alignment from Exonerate_coding2genome tgactctcattgactaaattaactatttttcttttttgctttgtcttcagtattggagagtatgccatcctaaaagatactcatgtaatcatcaacctgtggcgcactgcatcatgacaaaaatgaatatcaggcagatcagttcatgcctggtgaccccctgtccactccatgctgactcctgtaccatccagtttcccgc Alignment from GeneWise CATTGGAGAGTTTGCCATCCCGAAGGACACACATGTGATCATCAATCTCTGG-GCACTGCATCACGATAAAAATGAATGGGACCAGCCAGATCGGTTTATGCCTG tgactctcattgactaaattaactatttttcttttttgctttgtcttcagTATTGGAGAGTATGCCATCCTAAAAGATACTCATGTAATCATCAACCTGTGGCGCACTGCATCATGACAAAAATGAATAT---CAGGCAGATCAGTTCATGCCTGgtgaccccctgtccactccatgctgactcctgtaccatccagtttcccgc #### Cyp17a1_ID9994_6 --> 0 - 2 Original Alignment GTGAAGAGGAAGATCCAAAAGGAGATTGACCAGTATGTAGGCTTCAGTCGAACACCGTCTTTCAATGACCGGACT-CACCTCCTCATGCTGGAGGCCACTATCCGAGAAGTGCTTCGTATCAGGCCGGTGGCCCCCTTGCTCATCCCACACAAGGCTAACATTGACTCCag attcctttgttcctcttgcaagtgtgtatctccccttctccaacccacagGTGCGGAGGAAGATCAAAAAGGAGATTGACCAGTATGTAGGCTTCAGGCAAACTCCATCTTTCAATGACCGAACACCACCTTCTCACACTGGAGGCCACAATGCGAGAGGTTCTCCGTATCAGGCCAGTGGCCCCCCTGCTCATTCCCCACAAAGCTAATATCGACTCCaggtgagtccttcttgctgaattatctacctaggatacagccaattggtatc Alignment from CESAR GTGAAGAGGAAGATCCAAAAGGAGATTGACCAGTATGTAGGCTTCAGTCGAACACCGTCTTTCAATGACCGGACT-CACCTCCTCATGCTGGAGGCCACTATCCGAGAAGTGCTTCGTATCAGGCCGGTGGCCCCCTTGCTCATCCCACACAAGGCTAACATTGACTCCag attcctttgttcctcttgcaagtgtgtatctccccttctccaacccacagGTGCGGAGGAAGATCAAAAAGGAGATTGACCAGTATGTAGGCTTCAGGCAAACTCCATCTTTCAATGACCGAACACCACCTTCTCACACTGGAGGCCACAATGCGAGAGGTTCTCCGTATCAGGCCAGTGGCCCCCCTGCTCATTCCCCACAAAGCTAATATCGACTCCaggtgagtccttcttgctgaattatctacctaggatacagccaattggtatc Alignment from Spaln_aa2Genome GTGAAGAGGAAGATCCAAAAGGAGATTGACCAGTATGTAGGCTTCAGTCGAACACCGTCTTTCAATGACCGGACT-CACCTCCTCATGCTGGAGGCCACTATCCGAGAAGTGCTTCGTATCAGGCCGGTGGCCCCCTTGCTCATCCCACACAAGGCTAACATTGACTCCAG attcctttgttcctcttgcaagtgtgtatctccccttctccaacccacagGTGCGGAGGAAGATCAAAAAGGAGATTGACCAGTATGTAGGCTTCAGGCAAACTCCATCTTTCAATGACCGAACAcCACCTTCTCACACTGGAGGCCACAATGCGAGAGGTTCTCCGTATCAGGCCAGTGGCCCCCCTGCTCATTCCCCACAAAGCTAATATCGACTCCAGgtgagtccttcttgctgaattatctacctaggatacagccaattggtatc Alignment from Spaln_nt2Genome GTGAAGAGGAAGATCCAAAAGGAGATTGACCAGTATGTAGGCTTCAGTCGAACACCGTCTTTCAATGACCGGACTC-ACCTCCTCATGCTGGAGGCCACTATCCGAGAAGTGCTTCGTATCAGGCCGGTGGCCCCCTTGCTCATCCCACACAAGGCTAACATTGACTCCAG attcctttgttcctcttgcaagtgtgtatctccccttctccaacccacagGTGCGGAGGAAGATCAAAAAGGAGATTGACCAGTATGTAGGCTTCAGGCAAACTCCATCTTTCAATGACCGAACACCACCTTCTCACACTGGAGGCCACAATGCGAGAGGTTCTCCGTATCAGGCCAGTGGCCCCCCTGCTCATTCCCCACAAAGCTAATATCGACTCCAGgtgagtccttcttgctgaattatctacctaggatacagccaattggtatc Alignment from Pairagon GTGAAGAGGAAGATCCAAAAGGAGATTGACCAGTATGTAGGCTTCAGTCGAACACCGTCTTTCAATGACCGGAC-TCACCTCCTCATGCTGGAGGCCACTATCCGAGAAGTGCTTCGTATCAGGCCGGTGGCCCCCTTGCTCATCCCACACAAGGCTAACATTGACTCCAG attcctttgttcctcttgcaagtgtgtatctccccttctccaacccacagGTGCGGAGGAAGATCAAAAAGGAGATTGACCAGTATGTAGGCTTCAGGCAAACTCCATCTTTCAATGACCGAACACCACCTTCTCACACTGGAGGCCACAATGCGAGAGGTTCTCCGTATCAGGCCAGTGGCCCCCCTGCTCATTCCCCACAAAGCTAATATCGACTCCAGgtgagtccttcttgctgaattatctacctaggatacagccaattggtatc Alignment from Exonerate_protein2genome GTGAAGAGGAAGATCCAAAAGGAGATTGACCAGTATGTAGGCTTCAGTCGAACACCGTCTTTCAATGACCGGACT-CACCTCCTCATGCTGGAGGCCACTATCCGAGAAGTGCTTCGTATCAGGCCGGTGGCCCCCTTGCTCATCCCACACAAGGCTAACATTGACTCCAG attcctttgttcctcttgcaagtgtgtatctccccttctccaacccacagGTGCGGAGGAAGATCAAAAAGGAGATTGACCAGTATGTAGGCTTCAGGCAAACTCCATCTTTCAATGACCGAACACCACCTTCTCACACTGGAGGCCACAATGCGAGAGGTTCTCCGTATCAGGCCAGTGGCCCCCCTGCTCATTCCCCACAAAGCTAATATCGACTCCAGgtgagtccttcttgctgaattatctacctaggatacagccaattggtatc Alignment from Exonerate_coding2genome GTGAAGAGGAAGATCCAAAAGGAGATTGACCAGTATGTAGGCTTCAGTCGAACACCGTCTTTCAATGACCGGACT-CACCTCCTCATGCTGGAGGCCACTATCCGAGAAGTGCTTCGTATCAGGCCGGTGGCCCCCTTGCTCATCCCACACAAGGCTAACATTGACTCCAG attcctttgttcctcttgcaagtgtgtatctccccttctccaacccacagGTGCGGAGGAAGATCAAAAAGGAGATTGACCAGTATGTAGGCTTCAGGCAAACTCCATCTTTCAATGACCGAACACCACCTTCTCACACTGGAGGCCACAATGCGAGAGGTTCTCCGTATCAGGCCAGTGGCCCCCCTGCTCATTCCCCACAAAGCTAATATCGACTCCAGgtgagtccttcttgctgaattatctacctaggatacagccaattggtatc Alignment from GeneWise GTGAAGAGGAAGATCCAAAAGGAGATTGACCAGTATGTAGGCTTCAGTCGAACACCGTCTTTCAATGACCGG-ACTCACCTCCTCATGCTGGAGGCCACTATCCGAGAAGTGCTTCGTATCAGGCCGGTGGCCCCCTTGCTCATCCCACACAAGGCTAACATTGACTCCAG attcctttgttcctcttgcaagtgtgtatctccccttctccaacccacagGTGCGGAGGAAGATCAAAAAGGAGATTGACCAGTATGTAGGCTTCAGGCAAACTCCATCTTTCAATGACCGAACACCACCTTCTCACACTGGAGGCCACAATGCGAGAGGTTCTCCGTATCAGGCCAGTGGCCCCCCTGCTCATTCCCCACAAAGCTAATATCGACTCCAGgtgagtccttcttgctgaattatctacctaggatacagccaattggtatc #### Cyp17a1_ID9995_5 --> 0 - 0 Original Alignment GAGAAATTCAATAGTGAATCT-CTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG atattaggtgagcagacatgtaacaatcactgccttctctgccttctcagGAGAAATTCAACAGTGAGTCTCCTTTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACAGGAGAAGGTCAAGACCCAAGTGTGTTCTCTGATAAGCATGTCCTTGTCAGGGTTGGAGACATCTTG------GGCGTAGAAACCACTAGTTCTGTGCTGAATTGGCTACTGACATTCTTAGTTCATAACCCTCAGgtgagaatgtgtcttgatcaccatgaaggccatgcctgtaaccatagtca Alignment from CESAR GAGAAATTCAATAGTGAATCT-CTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG atattaggtgagcagacatgtaacaatcactgccttctctgccttctcagGAGAAATTCAACAGTGAGTCTCCTTTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACAGGAGAAGGTCAAGACCCAAGTGTGTTCTCTGATAAGCATGTCCTTGTCAGGGTTGGAGACATCTTG------GGCGTAGAAACCACTAGTTCTGTGCTGAATTGGCTACTGACATTCTTAGTTCATAACCCTCAGgtgagaatgtgtcttgatcaccatgaaggccatgcctgtaaccatagtca Alignment from Spaln_aa2Genome GAGAAATTCAATAGTGAATCT-CTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG atattaggtgagcagacatgtaacaatcactgccttctctgccttctcagGAGAAATTCAACAGTGAGTCTcCTTTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACAGGAGAAGGTCAAGACCCAAGTGTGTTCTCTGATAAGCATGTCCTTGTCAGGGTTGGAGACATCTTG------GGCGTAGAAACCACTAGTTCTGTGCTGAATTGGCTACTGACATTCTTAGTTCATAACCCTCAGgtgagaatgtgtcttgatcaccatgaaggccatgcctgtaaccatagtca Alignment from Spaln_nt2Genome GAGAAATTCAATAGTGAATCTC-TCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG atattaggtgagcagacatgtaacaatcactgccttctctgccttctcagGAGAAATTCAACAGTGAGTCTCCTTTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACAGGAGAAGGTCAAGACCCAAGTGTGTTCTCTGATAAGCATGTCCTTGTCAGGGTTGGAGACATCTT------GGGCGTAGAAACCACTAGTTCTGTGCTGAATTGGCTACTGACATTCTTAGTTCATAACCCTCAGgtgagaatgtgtcttgatcaccatgaaggccatgcctgtaaccatagtca Alignment from Pairagon GAGAAATTCAATAGTGAATCT-CTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG atattaggtgagcagacatgtaacaatcactgccttctctgccttctcagGAGAAATTCAACAGTGAGTCTCCTTTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACAGGAGAAGGTCAAGACCCAAGTGTGTTCTCTGATAAGCATGTCCTTGTCAGGGTTGGAGACATCTT------GGGCGTAGAAACCACTAGTTCTGTGCTGAATTGGCTACTGACATTCTTAGTTCATAACCCTCAGgtgagaatgtgtcttgatcaccatgaaggccatgcctgtaaccatagtca Alignment from Exonerate_protein2genome GAGAAATTCAATAGTGAATCT-CTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG atattaggtgagcagacatgtaacaatcactgccttctctgccttctcagGAGAAATTCAACAGTGAGTCTCCTTTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACAGGAGAAGGTCAAGACCCAAGTGTGTTCTCTGATAAGCATGTCCTTGTCAGGGTTGGAGACATCTTG------GGCGTAGAAACCACTAGTTCTGTGCTGAATTGGCTACTGACATTCTTAGTTCATAACCCTCAGgtgagaatgtgtcttgatcaccatgaaggccatgcctgtaaccatagtca Alignment from Exonerate_coding2genome GAGAAATTCAATAGTGAATCT-CTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG atattaggtgagcagacatgtaacaatcactgccttctctgccttctcagGAGAAATTCAACAGTGAGTCTCCTTTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACAGGAGAAGGTCAAGACCCAAGTGTGTTCTCTGATAAGCATGTCCTTGTCAGGGTTGGAGACATCTTG------GGCGTAGAAACCACTAGTTCTGTGCTGAATTGGCTACTGACATTCTTAGTTCATAACCCTCAGgtgagaatgtgtcttgatcaccatgaaggccatgcctgtaaccatagtca Alignment from GeneWise GTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG atattaggtgagcagacatgtaacaatcactgccttctctgccttctcaggagaaattcaacagTGAGTCTCCTTTCCAGCCTGACAGACATTCTTATACAAGCCAAAATGAATGCAGAAAATAATAACACAGGAGAAGGTCAAGACCCAAGTGTGTTCTCTGATAAGCATGTCCTTGTCAGGGTTGGAGACATCTTGGGC------GTAGAAACCACTAGTTCTGTGCTGAATTGGCTACTGACATTCTTAGTTCATAACCCTCAGgtgagaatgtgtcttgatcaccatgaaggccatgcctgtaaccatagtca #### Cyp26a1_ID7414_2 --> 0 - 0 Original Alignment CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAG-ACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG accatggccacttccatgataaagtcaccatttttgtctttctcctttagCGCAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCATCTACAAGCACACATCTGTTTGGCCGGCCAACGGTGCGGGTGATGGGTACAGATAATGTTCGTCGTATTTTGTTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCATCATCCTGGGTGCTGGCTGCCTTTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtaaggattggcaggccacttcttcaacagtgtgattgatgctatgcctt Alignment from CESAR CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAG-ACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG accatggccacttccatgataaagtcaccatttttgtctttctcctttagCGCAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCATCTACAAGCACACATCTGTTTGGCCGGCCAACGGTGCGGGTGATGGGTACAGATAATGTTCGTCGTATTTTGTTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCATCATCCTGGGTGCTGGCTGCCTTTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtaaggattggcaggccacttcttcaacagtgtgattgatgctatgcctt Alignment from Spaln_aa2Genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAG-ACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG accatggccacttccatgataaagtcaccatttttgtctttctcctttagCGCAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCATCTACAAGcACACATCTGTTTGGCCGGCCAACGGTGCGGGTGATGGGTACAGATAATGTTCGTCGTATTTTGTTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCATCATCCTGGGTGCTGGCTGCCTTTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtaaggattggcaggccacttcttcaacagtgtgattgatgctatgcctt Alignment from Spaln_nt2Genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAG-ACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG accatggccacttccatgataaagtcaccatttttgtctttctcctttagCGCAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCATCTACAAGCACACATCTGTTTGGCCGGCCAACGGTGCGGGTGATGGGTACAGATAATGTTCGTCGTATTTTGTTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCATCATCCTGGGTGCTGGCTGCCTTTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtaaggattggcaggccacttcttcaacagtgtgattgatgctatgcctt Alignment from Pairagon CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAG-ACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG accatggccacttccatgataaagtcaccatttttgtctttctcctttagCGCAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCATCTACAAGCACACATCTGTTTGGCCGGCCAACGGTGCGGGTGATGGGTACAGATAATGTTCGTCGTATTTTGTTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCATCATCCTGGGTGCTGGCTGCCTTTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtaaggattggcaggccacttcttcaacagtgtgattgatgctatgcctt Alignment from Exonerate_protein2genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAG-ACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG accatggccacttccatgataaagtcaccatttttgtctttctcctttagCGCAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCATCTACAAGCACACATCTGTTTGGCCGGCCAACGGTGCGGGTGATGGGTACAGATAATGTTCGTCGTATTTTGTTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCATCATCCTGGGTGCTGGCTGCCTTTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtaaggattggcaggccacttcttcaacagtgtgattgatgctatgcctt Alignment from Exonerate_coding2genome CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTACAAG-ACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG accatggccacttccatgataaagtcaccatttttgtctttctcctttagCGCAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCATCTACAAGCACACATCTGTTTGGCCGGCCAACGGTGCGGGTGATGGGTACAGATAATGTTCGTCGTATTTTGTTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCATCATCCTGGGTGCTGGCTGCCTTTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtaaggattggcaggccacttcttcaacagtgtgattgatgctatgcctt Alignment from GeneWise CGGAGGAAGTTTCTGCAGATGAAGCGCAGGAAATACGGCTTCATCTAC-AAGACGCATCTGTTTGGGCGGCCCACGGTGCGGGTGATGGGCGCGGATAATGTGCGGCGCATCTTGCTGGGAGAGCACCGGTTGGTGTCGGTGCACTGGCCCGCGTCGGTGCGCACCATCCTGGGCGCTGGCTGCCTCTCCAACCTGCACGATTCCTCGCACAAGCAGCGAAAGAAG accatggccacttccatgataaagtcaccatttttgtctttctcctttagCGCAGGAAGTTTCTTCAGATGAAGCACAGGAAATATGGCTTCATCTACAAGCACACATCTGTTTGGCCGGCCAACGGTGCGGGTGATGGGTACAGATAATGTTCGTCGTATTTTGTTGGGGGAGCACCGGTTGGTGTCAGTGCACTGGCCTGCATCAGTGCGCATCATCCTGGGTGCTGGCTGCCTTTCCAACCTGTATGATTCCTCACACAAGAAGCAAAAGAAGgtaaggattggcaggccacttcttcaacagtgtgattgatgctatgcctt #### Cyp26a1_ID7415_3 --> 0 - 0 Original Alignment GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATC-GCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC tcaagcacagatataggccaataagtagctttctttgtttttcccatcagGTTATAATGCAGGCATTCAGTCGGGAAGCACTCCAGTGTTATGTCCCTGTCATTCGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGTGAGCAAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCTAGTGGAGTCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTgtaagtcattctctcttgtttggttttgcagGGTGTT---ACACGCAACA Alignment from CESAR GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATC-GCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC tcaagcacagatataggccaataagtagctttctttgtttttcccatcagGTTATAATGCAGGCATTCAGTCGGGAAGCACTCCAGTGTTATGTCCCTGTCATTCGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGTGAGCAAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCTAGTGGAGTCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTgtaagtcatttcaaccttcgacctgacacagGGTGTT---ACACGCAACA Alignment from Spaln_aa2Genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATC-GCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC tcaagcacagatataggccaataagtagctttctttgtttttcccatcagGTTATAATGCAGGCATTCAGTCGGGAAGCACTCCAGTGTTATGTCCCTGTCATTcGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGTGAGCAAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCTAGTGGAGTCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTgtaagtcattctctcttgtttggttttgcagGGTGTT---ACACGCAACA Alignment from Spaln_nt2Genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGAT-CGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG-------------------------------GGCGTGAAGGCGCGGAACC tcaagcacagatataggccaataagtagctttctttgtttttcccatcagGTTATAATGCAGGCATTCAGTCGGGAAGCACTCCAGTGTTATGTCCCTGTCATTCGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGTGAGCAAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCTAGTGGAGTCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTGTAAGTCATTCTCTCTTGTTTGGTTTTGCAGGGTGTTA---CACGCAACA Alignment from Pairagon GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGA-TCGCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC tcaagcacagatataggccaataagtagctttctttgtttttcccatcagGTTATAATGCAGGCATTCAGTCGGGAAGCACTCCAGTGTTATGTCCCTGTCATTCGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGTGAGCAAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCTAGTGGAGTCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTgtaagtcattctctcttgtttggttttgcagGGTGTTA---CACGCAACA Alignment from Exonerate_protein2genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATC-GCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC tcaagcacagatataggccaataagtagctttctttgtttttcccatcagGTTATAATGCAGGCATTCAGTCGGGAAGCACTCCAGTGTTATGTCCCTGTCATTCGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGTGAGCAAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCTAGTGGAGTCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTgtaagtcattctctcttgtttggttttgcagGGTGTT---ACACGCAACA Alignment from Exonerate_coding2genome GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATC-GCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC tcaagcacagatataggccaataagtagctttctttgtttttcccatcagGTTATAATGCAGGCATTCAGTCGGGAAGCACTCCAGTGTTATGTCCCTGTCATTCGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGTGAGCAAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCTAGTGGAGTCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTgtaagtcattctctcttgtttggttttgcagGGTGTT---ACACGCAACA Alignment from GeneWise GTGATTATGCAGGCCTTCAGCCGCGAGGCACTCCAGTGCTACGTGCCCGTGATC-GCTGAGGAAGTCAGCAGTTGTCTGGAGCAGTGGCTAAGCTGCGGCGAGCGCGGCCTCCTGGTCTACCCCGAGGTGAAGCGCCTCATGTTCCGCATCGCCATGCGCATCCTGCTGGGCTGCGAGCCGGGTCCAGCGGGCGGCGGGGAGGACGAGCAGCAGCTCGTGGAGGCTTTCGAGGAGATGACCCGCAATCTCTTCTCTCTTCCCATTGACGTGCCCTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACC tcaagcacagatataggccaataagtagctttctttgtttttcccatcagGTTATAATGCAGGCATTCAGTCGGGAAGCACTCCAGTGTTATGTCCCTGTCATTCGCTGAGGAAGTCAGCAGTTGTTTGGAGCAGTGGCTATGCTGTGGTGAACATGGCCTCCTGGCCTACCCTGAGGTGAAGCGCCTCATGTTCCACATTGCCATGCGAATCTTGCTAGGCTGTGAGCAAGGCTCAGCAGGCAGTGGGGAGGATGAACAGCAGCTAGTGGAGTCATTCGAGGAAATGACCCGCAATCTCTTCTCCCTTCCCATTGATGTCCCATTCAGCGGTTTGTACCGTgtaagtcattctctcttgtttggttttgcagGGTGTT---ACACGCAACA #### Cyp26a1_ID7416_4 --> 0 - 0 Original Alignment CTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGAC-GCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG ATTCAGCGGTTTGTACCGTgtaagtcatttcaaccttcgacctgacacagGGTGTT---ACACGCAACATAATACAGGCATGCATTGAGGAGAACATTCATGCAAATATCCACCAGCTCCAGGCCACAGAACCAGATGGGGGTTGCAAAGATCGCATTGCAGCTTCTGATCAAGCACTCATGGGAA---GGTGAAGAATTGGACATACAGgtgagaaacaatttcaaaaggtaccaaagggcagctgagtgtattcccga Alignment from CESAR CTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGAC-GCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG ATTCAGCGGTTTGTACCGTgtaagtcatttcaaccttcgacctgacacagGGTGTT---ACACGCAACATAATACAGGCATGCATTGAGGAGAACATTCATGCAAATATCCACCAGCTCCAGGCCACAGAACCAGATGGGGGTTGCAAAGATCGCATTGCAGCTTCTGATCAAGCACTCATGGGAA---GGTGAAGAATTGGACATACAGgtgagaaacaatttcaaaaggtaccaaagggcagctgagtgtattcccga Alignment from Spaln_aa2Genome CTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGAC-GCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG ATTCAGCGGTTTGTACCGTgtaagtcatttcaaccttcgacctgacacagGGTGTT---ACACGCAACATAATACAGGCATGCATTGAGGAGAACATTCATGCAAATATCCACCAGCTCCAGGCCACAGAACCAGATGGGGGTTGCAAAGATcGCATTGCAGCTTCTGATCAAGCACTCATGGGAA---GGTGAAGAATTGGACATACAGgtgagaaacaatttcaaaaggtaccaaagggcagctgagtgtattcccga Alignment from Spaln_nt2Genome CTTTAGCGGCCTGTACCGG-------------------------------GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGA-CGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG ATTCAGCGGTTTGTACCGTGTAAGTCATTTCAACCTTCGACCTGACACAGGGTGTTA---CACGCAACATAATACAGGCATGCATTGAGGAGAACATTCATGCAAATATCCACCAGCTCCAGGCCACAGAACCAGATGGGGGTTGCAAAGATCGCATTGCAGCTTCTGATCAAGCACTCATGGGA-AGGTGA-AGA-ATTGGACATACAGgtgagaaacaatttcaaaaggtaccaaagggcagctgagtgtattcccga Alignment from Pairagon CTTTAGCGGCCTGTACCG-------------------------------GGGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGA-CGCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG ATTCAGCGGTTTGTACCGTGTAAGTCATTTCAACCTTCGACCTGACACAGGGTGTTA---CACGCAACATAATACAGGCATGCATTGAGGAGAACATTCATGCAAATATCCACCAGCTCCAGGCCACAGAACCAGATGGGGGTTGCAAAGATCGCATTGCAGCTTCTGATCAAGCACTCATGGGA-----------------------AGgtgaagaattggacatacaggtgagaaacaatttcaaaaggtaccaaagggcagctgagtgtattcccga Alignment from Exonerate_protein2genome CTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGAC-GCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG ATTCAGCGGTTTGTACCGTgtaagtcatttcaaccttcgacctgacacagGGTGTT---ACACGCAACATAATACAGGCATGCATTGAGGAGAACATTCATGCAAATATCCACCAGCTCCAGGCCACAGAACCAGATGGGGGTTGCAAAGATCGCATTGCAGCTTCTGATCAAGCACTCATGGGAA---GGTGAAGAATTGGACATACAGgtgagaaacaatttcaaaaggtaccaaagggcagctgagtgtattcccga Alignment from Exonerate_coding2genome CTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGAC-GCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG ATTCAGCGGTTTGTACCGTgtaagtcatttcaaccttcgacctgacacagGGTGTT---ACACGCAACATAATACAGGCATGCATTGAGGAGAACATTCATGCAAATATCCACCAGCTCCAGGCCACAGAACCAGATGGGGGTTGCAAAGATCGCATTGCAGCTTCTGATCAAGCACTCATGGGAA---GGTGAAGAATTGGACATACAGgtgagaaacaatttcaaaaggtaccaaagggcagctgagtgtattcccga Alignment from GeneWise CTTTAGCGGCCTGTACCGG GGCGTGAAGGCGCGGAACCTTATACACGCGCGCATCGAGGAGAACATTCGCGCCAAGATCCGCCGGCTTCAGGCTACAGAGCCGGATGGGGGTTGCAAGGAC-GCGCTGCAGCTCCTGATTGAGCACTCGTGGGAGAGGGGAGAGAGGCTGGATATGCAG ATTCAGCGGTTTGTACCGTgtaagtcatttcaaccttcgacctgacacagGGTGTT---ACACGCAACATAATACAGGCATGCATTGAGGAGAACATTCATGCAAATATCCACCAGCTCCAGGCCACAGAACCAGATGGGGGTTGCAAAGATCGCATTGCAGCTTCTGATCAAGCACTCATGGGAA---GGTGAAGAATTGGACATACAGgtgagaaacaatttcaaaaggtaccaaagggcagctgagtgtattcccga #### Cyp2c50_ID7861_2 --> 0 - 1 Original Alignment TTATCAAAAGTTTAT---GGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTG-CATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg ttgaattgcagtcaaatctttctagtcttggcatgctgttctctccccagTTATCCAAAGTCTATGATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTATTACCAGGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTCGCTGGGAGAGAAAGACTACCAGTTTTTGATAAAGCTACCAATGGAATGggtaacaataggtttggaataccagtgagagaatgtgtgagtccatcccag Alignment from CESAR TTATCAAAAGTTTAT---GGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTG-CATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg ttgaattgcagtcaaatctttctagtcttggcatgctgttctctccccagTTATCCAAAGTCTATGATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTATTACCAGGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTCGCTGGGAGAGAAAGACTACCAGTTTTTGATAAAGCTACCAATGGAATGggtaacaataggtttggaataccagtgagagaatgtgtgagtccatcccag Alignment from Spaln_aa2Genome TTATCAAAAGTTTAT---GGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGA-TATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG ttgaattgcagtcaaatctttctagtcttggcatgctgttctctccccagTTATCCAAAGTCTATGATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTATTACCAGGGaTATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTCGCTGGGAGAGAAAGACTACCAGTTTTTGATAAAGCTACCAATGGAATGGgtaacaataggtttggaataccagtgagagaatgtgtgagtccatcccag Alignment from Spaln_nt2Genome TTATCAAAAGTTTATG---GCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGC-ATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG ttgaattgcagtcaaatctttctagtcttggcatgctgttctctccccagTTATCCAAAGTCTATGATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTATTACCAGGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTCGCTGGGAGAGAAAGACTACCAGTTTTTGATAAAGCTACCAATGGAATGGgtaacaataggtttggaataccagtgagagaatgtgtgagtccatcccag Alignment from Pairagon TTATCAAAAGTTT---ATGGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTG-CATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG ttgaattgcagtcaaatctttctagtcttggcatgctgttctctccccagTTATCCAAAGTCTATGATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTATTACCAGGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTCGCTGGGAGAGAAAGACTACCAGTTTTTGATAAAGCTACCAATGGAATGGgtaacaataggtttggaataccagtgagagaatgtgtgagtccatcccag Alignment from Exonerate_protein2genome TTATCAAAAGTTTAT---GGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTG-CATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG ttgaattgcagtcaaatctttctagtcttggcatgctgttctctccccagTTATCCAAAGTCTATGATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTATTACCAGGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTCGCTGGGAGAGAAAGACTACCAGTTTTTGATAAAGCTACCAATGGAATGGgtaacaataggtttggaataccagtgagagaatgtgtgagtccatcccag Alignment from Exonerate_coding2genome TTATCAAAAGTTTAT---GGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTG-CATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG ttgaattgcagtcaaatctttctagtcttggcatgctgttctctccccagTTATCCAAAGTCTATGATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTATTACCAGGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTCGCTGGGAGAGAAAGACTACCAGTTTTTGATAAAGCTACCAATGGAATGGgtaacaataggtttggaataccagtgagagaatgtgtgagtccatcccag Alignment from GeneWise TTATCAAAAGTTTAT---GGCCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTG-CATGGATATGAGGCAGTGAAGGAAGCTCTGGTTGACCATGGGGAGGAGTTTGCTGGAAGAGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG ttgaattgcagtcaaatctttctagtcttggcatgctgttctctccccagTTATCCAAAGTCTATGATGGTCCTGTGTATACTCTATATTTAGGCAAGAAGCCTACTGTAGTATTACCAGGGATATGAGGCAGTGAAGGAATCTTTAGTTGACCATGGGGAAGAATTCGCTGGGAGAGAAAGACTACCAGTTTTTGATAAAGCTACCAATGGAATGGgtaacaataggtttggaataccagtgagagaatgtgtgagtccatcccag #### Cyp2c54_ID7856_2 --> 0 - 1 Original Alignment TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAG---GAAGCTCTGGTTGAC-CATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg tgacaaccaggggtggtgacttcacattgtttctcatttatcccttgcagTTATCACGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTTGTGTTACATGGATATGAGGCAGTGAAGGAGGAAGCTCTTGCTGACCCAAGGGGATGTTTTTGCCGGAAGGGGAAGTCTCCCAGTTTTTGATAAAGCTACTAATGGAATGggtgagttttgtgttgtgtagtatgcattgttgcagtacagtgagagccaa Alignment from CESAR TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAG---GAAGCTCTGGTTGAC-CATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGg tgacaaccaggggtggtgacttcacattgtttctcatttatcccttgcagTTATCACGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTTGTGTTACATGGATATGAGGCAGTGAAGGAGGAAGCTCTTGCTGACCCAAGGGGATGTTTTTGCCGGAAGGGGAAGTCTCCCAGTTTTTGATAAAGCTACTAATGGAATGggtgagttttgtgttgtgtagtatgcattgttgcagtacagtgagagccaa Alignment from Spaln_aa2Genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAG---GAAGCTCTGGTTGAC-CATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaaccaggggtggtgacttcacattgtttctcatttatcccttgcagTTATCACGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTTGTGTTACATGGATATGAGGCAGTGAAGGAGGAAGCTCTTGCTGACcCAAGGGGATGTTTTTGCCGGAAGGGGAAGTCTCCCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagttttgtgttgtgtagtatgcattgttgcagtacagtgagagccaa Alignment from Spaln_nt2Genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGA---AGCTCTGGTTGACC-ATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaaccaggggtggtgacttcacattgtttctcatttatcccttgcagTTATCACGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTTGTGTTACATGGATATGAGGCAGTGAAGGAGGAAGCTCTTGCTGACCCAAGGGGATGTTTTTGCCGGAAGGGGAAGTCTCCCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagttttgtgttgtgtagtatgcattgttgcagtacagtgagagccaa Alignment from Pairagon TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGA---AGGAAGCTCTGGTTGA-CCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaaccaggggtggtgacttcacattgtttctcatttatcccttgcagTTATCACGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTTGTGTTACATGGATATGAGGCAGTGAAGGAGGAAGCTCTTGCTGACCCAAGGGGATGTTTTTGCCGGAAGGGGAAGTCTCCCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagttttgtgttgtgtagtatgcattgttgcagtacagtgagagccaa Alignment from Exonerate_protein2genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAA----GCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaaccaggggtggtgacttcacattgtttctcatttatcccttgcagTTATCACGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTTGTGTTACATGGATATGAGGCAGTGAAGGAGGAAGCTCTTGCTGACCCAAGGGGATGTTTTTGCCGGAAGGGGAAGTCTCCCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagttttgtgttgtgtagtatgcattgttgcagtacagtgagagccaa Alignment from Exonerate_coding2genome TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAGGAA----GCTCTGGTTGACCATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaaccaggggtggtgacttcacattgtttctcatttatcccttgcagTTATCACGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTTGTGTTACATGGATATGAGGCAGTGAAGGAGGAAGCTCTTGCTGACCCAAGGGGATGTTTTTGCCGGAAGGGGAAGTCTCCCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagttttgtgttgtgtagtatgcattgttgcagtacagtgagagccaa Alignment from GeneWise TTATCAAGAGTTTATGGTCCTGTGTATACTCTATATTTGGGCAGGAAGCCCACTGTGGTGTTGCATGGATATGAGGCAGTGAAG---GAAGCTCTGGTTGAC-CATGGGGATGTCTTTGCTGGAAGGGGAAGGCTCCCAGTTTTTGATAAAGCTACTAATGGAATGG tgacaaccaggggtggtgacttcacattgtttctcatttatcccttgcagTTATCACGAGTTTATGGTCCAGTGTATACTTCATATCTGGGGAGGAAGCCAACTGTTGTGTTACATGGATATGAGGCAGTGAAGGAGGAAGCTCTTGCTGACCCAAGGGGATGTTTTTGCCGGAAGGGGAAGTCTCCCAGTTTTTGATAAAGCTACTAATGGAATGGgtgagttttgtgttgtgtagtatgcattgttgcagtacagtgagagccaa #### D19Bwg1357e_ID5846_6 --> 2 - 2 Original Alignment gcGACTTGGTTGAATTAAGTAAA-GCCAAATATTCCAGGAATATCGTTAAGAAATTTCTCATGTATgg agcacagtagtaaggagcatagtatactctaacatgttttggattcccaggtGACTTAGTGGAGTTAAGTAGACGCAAAACATACCCAGAATATTGTTAAGAAATTTATTACGTATgggtttgggcaagattgtgtattgagatgtcccttaaaatgataagttgaat Alignment from CESAR gcGACTTGGTTGAATTAAGTAAA-GCCAAATATTCCAGGAATATCGTTAAGAAATTTCTCATGTATgg agcacagtagtaaggagcatagtatactctaacatgttttggattcccaggtGACTTAGTGGAGTTAAGTAGACGCAAAACATACCCAGAATATTGTTAAGAAATTTATTACGTATgggtttgggcaagattgtgtattgagatgtcccttaaaatgataagttgaat Alignment from Spaln_aa2Genome GCGACTTGGTTGAATTAAGTAAA-GCCAAATATTCCAGGAATATCGTTAAGAAATTTCTCATGTATGG agcacagtagtaaggagcatagtatactctaacatgttttggattcccagGTGACTTAGTGGAGTTAAGTAGAcGCAAAACATACCCAGAATATTGTTAAGAAATTTATTACGTATGGgtttgggcaagattgtgtattgagatgtcccttaaaatgataagttgaat Alignment from Spaln_nt2Genome GCGACTTGGTTGAATTAAGTAAA-GCCAAATATTCCAGGAATATCGTTAAGAAATTTCTCATGTATGG agcacagtagtaaggagcatagtatactctaacatgttttggattcccagGTGACTTAGTGGAGTTAAGTAGACGCAAAACATACCCAGAATATTGTTAAGAAATTTATTACGTATGGgtttgggcaagattgtgtattgagatgtcccttaaaatgataagttgaat Alignment from Pairagon GCGACTTGGTTGAATTAAGTAAA-GCCAAATATTCCAGGAATATCGTTAAGAAATTTCTCATGTATGG agcacagtagtaaggagcatagtatactctaacatgttttggattcccagGTGACTTAGTGGAGTTAAGTAGACGCAAAACATACCCAGAATATTGTTAAGAAATTTATTACGTATGGgtttgggcaagattgtgtattgagatgtcccttaaaatgataagttgaat Alignment from Exonerate_protein2genome GCGACTTGGTTGAATTAAGTAAA-GCCAAATATTCCAGGAATATCGTTAAGAAATTTCTCATGTATGG agcacagtagtaaggagcatagtatactctaacatgttttggattcccagGTGACTTAGTGGAGTTAAGTAGACGCAAAACATACCCAGAATATTGTTAAGAAATTTATTACGTATGGgtttgggcaagattgtgtattgagatgtcccttaaaatgataagttgaat Alignment from Exonerate_coding2genome GCGACTTGGTTGAATTAAGTAAA-GCCAAATATTCCAGGAATATCGTTAAGAAATTTCTCATGTATGG agcacagtagtaaggagcatagtatactctaacatgttttggattcccagGTGACTTAGTGGAGTTAAGTAGACGCAAAACATACCCAGAATATTGTTAAGAAATTTATTACGTATGGgtttgggcaagattgtgtattgagatgtcccttaaaatgataagttgaat Alignment from GeneWise agcacagtagtaaggagcatagtatactctaacatgttttggattcccaggtgacttagtggagttaagtagacgcaaaacatacccagaatattgttaagaaatttattacgtatgggtttgggcaagattgtgtattgagatgtcccttaaaatgataagttgaat #### Dagla_ID2755_15 --> 1 - 0 Original Alignment gATTGGCCTTTCCCAGCTG-GAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaataaagatgttaacaaagaaaaacagcgaccccctttctcctctacaggGTTGGCCTTTCCCAACTGCGAAGGATTCTGCCGGCAGCTTTTAGATGTCCTGCAACGGAGTACTAAACCCAAGgtgagaactgttcagatctacagcgccagaaaagtcctgtgaatcccatg Alignment from CESAR gATTGGCCTTTCCCAGCTG-GAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaataaagatgttaacaaagaaaaacagcgaccccctttctcctctacaggGTTGGCCTTTCCCAACTGCGAAGGATTCTGCCGGCAGCTTTTAGATGTCCTGCAACGGAGTACTAAACCCAAGgtgagaactgttcagatctacagcgccagaaaagtcctgtgaatcccatg Alignment from Spaln_aa2Genome GATTGGCCTTTCCCAGCTG-GAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaataaagatgttaacaaagaaaaacagcgaccccctttctcctctacagGGTTGGCCTTTCCCAACTGcGAAGGATTCTGCCGGCAGCTTTTAGATGTCCTGCAACGGAGTACTAAACCCAAGgtgagaactgttcagatctacagcgccagaaaagtcctgtgaatcccatg Alignment from Spaln_nt2Genome GATTGGCCTTTCCCAGCTG-GAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaataaagatgttaacaaagaaaaacagcgaccccctttctcctctacagGGTTGGCCTTTCCCAACTGCGAAGGATTCTGCCGGCAGCTTTTAGATGTCCTGCAACGGAGTACTAAACCCAAGgtgagaactgttcagatctacagcgccagaaaagtcctgtgaatcccatg Alignment from Pairagon GATTGGCCTTTCCCAGCTG-GAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaataaagatgttaacaaagaaaaacagcgaccccctttctcctctacagGGTTGGCCTTTCCCAACTGCGAAGGATTCTGCCGGCAGCTTTTAGATGTCCTGCAACGGAGTACTAAACCCAAGgtgagaactgttcagatctacagcgccagaaaagtcctgtgaatcccatg Alignment from Exonerate_protein2genome GATTGGCCTTTCCCAGCTG-GAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaataaagatgttaacaaagaaaaacagcgaccccctttctcctctacagGGTTGGCCTTTCCCAACTGCGAAGGATTCTGCCGGCAGCTTTTAGATGTCCTGCAACGGAGTACTAAACCCAAGgtgagaactgttcagatctacagcgccagaaaagtcctgtgaatcccatg Alignment from Exonerate_coding2genome gaataaagatgttaacaaagaaaaacagcgaccccctttctcctctacagggttggcctttcccaactgcgaaggattctgccggcagcttttagatgtcctgcaacggagtactaaacccaaggtgagaactgttcagatctacagcgccagaaaagtcctgtgaatcccatg Alignment from GeneWise GATTGGCCTTTCCCAG-CTGGAAGGTTTCCGTCGGCAGCTTCTGGATGTCCTGCAGCGGAGCACCAAGCCCAAA gaataaagatgttaacaaagaaaaacagcgaccccctttctcctctacagGGTTGGCCTTTCCCAACTGCGAAGGATTCTGCCGGCAGCTTTTAGATGTCCTGCAACGGAGTACTAAACCCAAGgtgagaactgttcagatctacagcgccagaaaagtcctgtgaatcccatg #### Dagla_ID2759_11 --> 0 - 0 Original Alignment GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCT-GTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG tcttggtgtacttttgttggactaccacctggtcttctctttgttcctagGATGCCTTAACTGATTTGACAGGTGATGCAGAGCACCTTCCTCGCAGAGACACACAGAGGTGCCTGGTTGGGGCACAAAgtgaggggttcactgaggttcccccatctcacaattgctctgatgctgaa Alignment from CESAR GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCT-GTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG tcttggtgtacttttgttggactaccacctggtcttctctttgttcctagGATGCCTTAACTGATTTGACAGGTGATGCAGAGCACCTTCCTCGCAGAGACACACAGAGGTGCCTGGTTGGGGCACAAAgtgaggggttcactgaggttcccccatctcacaattgctctgatgctgaa Alignment from Spaln_aa2Genome GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCT-GTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG tcttggtgtacttttgttggactaccacctggtcttctctttgttcctagGATGCCTTAACTGATTTGACAGGTGATGCAGAGCACCTTCCTcGCAGAGACACACAGAGGTGCCTGGTTGGGGCACAAAgtgaggggttcactgaggttcccccatctcacaattgctctgatgctgaa Alignment from Spaln_nt2Genome GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCT-GTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG tcttggtgtacttttgttggactaccacctggtcttctctttgttcctagGATGCCTTAACTGATTTGACAGGTGATGCAGAGCACCTTCCTCGCAGAGACACACAGAGGTGCCTGGTTGGGGCACAAAgtgaggggttcactgaggttcccccatctcacaattgctctgatgctgaa Alignment from Pairagon GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCT-GTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG tcttggtgtacttttgttggactaccacctggtcttctctttgttcctagGATGCCTTAACTGATTTGACAGGTGATGCAGAGCACCTTCCTCGCAGAGACACACAGAGGTGCCTGGTTGGGGCACAAAgtgaggggttcactgaggttcccccatctcacaattgctctgatgctgaa Alignment from Exonerate_protein2genome GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCT-GTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG tcttggtgtacttttgttggactaccacctggtcttctctttgttcctagGATGCCTTAACTGATTTGACAGGTGATGCAGAGCACCTTCCTCGCAGAGACACACAGAGGTGCCTGGTTGGGGCACAAAgtgaggggttcactgaggttcccccatctcacaattgctctgatgctgaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GATGCCCTGACTGACCTGACAGGCGATGCTGAGCGCCTCCCT-GTGGAGGGACACAGAGGCACCTGGTTGGGCCACAAG-------------------------------------------------- tcttggtgtacttttgttggactaccacctggtcttctctttgttcctagGATGCCTTAACTGATTTGACAGGTGATGCAGAGCACCTTCCTCGCAGAGACACACAGAGGTGCCTGGTTGGGGCACAAAGTGAGGGGTTCACTGAGGTTCCCCCATCTCACAATTGCTCTGATGCTGAA #### Dak_ID2900_13 --> 2 - 0 Original Alignment ccATTCAGGGCTGGCTAAAG-GAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG actaaagtggcttgtagttcagatcccattaactgcttttctcctcctagccATCCAGGGGTGGTTGAAGCGAGGGCCCATCCCTGACCAGCCCGACCCAGCTACTCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtgagcaagaacagtccttaggactattgttcaaagccttaccacgtggc Alignment from CESAR ccATTCAGGGCTGGCTAAAG-GAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG actaaagtggcttgtagttcagatcccattaactgcttttctcctcctagccATCCAGGGGTGGTTGAAGCGAGGGCCCATCCCTGACCAGCCCGACCCAGCTACTCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtgagcaagaacagtccttaggactattgttcaaagccttaccacgtggc Alignment from Spaln_aa2Genome CCATTCAGGGCTGGCTAAAG-GAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG actaaagtggcttgtagttcagatcccattaactgcttttctcctcctagCCATCCAGGGGTGGTTGAAGcGAGGGCCCATCCCTGACCAGCCCGACCCAGCTACTCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtgagcaagaacagtccttaggactattgttcaaagccttaccacgtggc Alignment from Spaln_nt2Genome CCATTCAGGGCTGGCTAAAG-GAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG actaaagtggcttgtagttcagatcccattaactgcttttctcctcctagCCATCCAGGGGTGGTTGAAGCGAGGGCCCATCCCTGACCAGCCCGACCCAGCTACTCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtgagcaagaacagtccttaggactattgttcaaagccttaccacgtggc Alignment from Pairagon CCATTCAGGGCTGGCTAAAG-GAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG actaaagtggcttgtagttcagatcccattaactgcttttctcctcctagCCATCCAGGGGTGGTTGAAGCGAGGGCCCATCCCTGACCAGCCCGACCCAGCTACTCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtgagcaagaacagtccttaggactattgttcaaagccttaccacgtggc Alignment from Exonerate_protein2genome CCATTCAGGGCTGGCTAAAG-GAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG actaaagtggcttgtagttcagatcccattaactgcttttctcctcctagCCATCCAGGGGTGGTTGAAGCGAGGGCCCATCCCTGACCAGCCCGACCCAGCTACTCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtgagcaagaacagtccttaggactattgttcaaagccttaccacgtggc Alignment from Exonerate_coding2genome CCATTCAGGGCTGGCTAAAG-GAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG actaaagtggcttgtagttcagatcccattaactgcttttctcctcctagCCATCCAGGGGTGGTTGAAGCGAGGGCCCATCCCTGACCAGCCCGACCCAGCTACTCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtgagcaagaacagtccttaggactattgttcaaagccttaccacgtggc Alignment from GeneWise CCATTCAGGGCTGGCTA-AAGGAAGGCCCATCTCTAACCAGCCCTGCCCAGGTACTCTCCAGATTGTCTGTCCTGCTGCTGGAGAGGATGGGAGGCTCATCTGGGGCG actaaagtggcttgtagttcagatcccattaactgcttttctcctcctagCCATCCAGGGGTGGTTGAAGCGAGGGCCCATCCCTGACCAGCCCGACCCAGCTACTCTCCAGATTGCCTGTCCTGCTGCTGGAGAGGATGGGAGCTTCATCTGGGGCAgtgagcaagaacagtccttaggactattgttcaaagccttaccacgtggc #### Dak_ID2904_9 --> 2 - 1 Original Alignment gcTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAA-CTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGg tattgctagtaccactcacaaggaggctcctcttgcccgggctctgacaggtTCTTCAGTGGTACTGATAGTGAATAATCTTGGTGGTCTCTCTTTCCGGGAACCTGGGTATCATAACCGATGCTGCCATACGTTTGCTTggtacttacacttcattgggcatccttgtggagaccctttaatgcctcaga Alignment from CESAR gcTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAA-CTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGg tattgctagtaccactcacaaggaggctcctcttgcccgggctctgacaggtTCTTCAGTGGTACTGATAGTGAATAATCTTGGTGGTCTCTCTTTCCGGGAACCTGGGTATCATAACCGATGCTGCCATACGTTTGCTTggtacttacacttcattgggcatccttgtggagaccctttaatgcctcaga Alignment from Spaln_aa2Genome GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAACTGGGC-ATCATAGCTGATGCTGCCATACGCTTGCTGG tattgctagtaccactcacaaggaggctcctcttgcccgggctctgacagGTTCTTCAGTGGTACTGATAGTGAATAATCTTGGTGGTCTCTCTTTCCGGGAACCTGGGtATCATAACCGATGCTGCCATACGTTTGCTTGgtacttacacttcattgggcatccttgtggagaccctttaatgcctcaga Alignment from Spaln_nt2Genome GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAA-CTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG tattgctagtaccactcacaaggaggctcctcttgcccgggctctgacagGTTCTTCAGTGGTACTGATAGTGAATAATCTTGGTGGTCTCTCTTTCCGGGAACCTGGGTATCATAACCGATGCTGCCATACGTTTGCTTGgtacttacacttcattgggcatccttgtggagaccctttaatgcctcaga Alignment from Pairagon GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAA-CTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG tattgctagtaccactcacaaggaggctcctcttgcccgggctctgacagGTTCTTCAGTGGTACTGATAGTGAATAATCTTGGTGGTCTCTCTTTCCGGGAACCTGGGTATCATAACCGATGCTGCCATACGTTTGCTTGgtacttacacttcattgggcatccttgtggagaccctttaatgcctcaga Alignment from Exonerate_protein2genome GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAA-CTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG tattgctagtaccactcacaaggaggctcctcttgcccgggctctgacagGTTCTTCAGTGGTACTGATAGTGAATAATCTTGGTGGTCTCTCTTTCCGGGAACCTGGGTATCATAACCGATGCTGCCATACGTTTGCTTGgtacttacacttcattgggcatccttgtggagaccctttaatgcctcaga Alignment from Exonerate_coding2genome GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTCCTGGAA-CTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG tattgctagtaccactcacaaggaggctcctcttgcccgggctctgacagGTTCTTCAGTGGTACTGATAGTGAATAATCTTGGTGGTCTCTCTTTCCGGGAACCTGGGTATCATAACCGATGCTGCCATACGTTTGCTTGgtacttacacttcattgggcatccttgtggagaccctttaatgcctcaga Alignment from GeneWise GCTCTTCAGTGGTGCTGATAGTCAACAATCTGGGTGGCCTGTCTTTC-CTGGAACTGGGCATCATAGCTGATGCTGCCATACGCTTGCTGG tattgctagtaccactcacaaggaggctcctcttgcccgggctctgacagGTTCTTCAGTGGTACTGATAGTGAATAATCTTGGTGGTCTCTCTTTCCGGGAACCTGGGTATCATAACCGATGCTGCCATACGTTTGCTTGgtacttacacttcattgggcatccttgtggagaccctttaatgcctcaga #### Dak_ID2907_6 --> 2 - 1 Original Alignment gtACCCTAGGGGTGAGCTTG-TCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGg accatccctttaaattaccaaccatccccctgtgtgtgcttggcttgcaggtACCCTAGGTGTGACCTTGCTCATCCTGTAGTGTGCCTGGCACCACACACACTTTTGAGCTTGCAGCTGATGAAATAGAGTTGGGCTTGggtgagcacactgtcataatgcatcttactttgtgtctgatgtaactcagc Alignment from CESAR gtACCCTAGGGGTGAGCTTG-TCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGg accatccctttaaattaccaaccatccccctgtgtgtgcttggcttgcaggtACCCTAGGTGTGACCTTGCTCATCCTGTAGTGTGCCTGGCACCACACACACTTTTGAGCTTGCAGCTGATGAAATAGAGTTGGGCTTGggtgagcacactgtcataatgcatcttactttgtgtctgatgtaactcagc Alignment from Spaln_aa2Genome GTACCCTAGGGGTGAGCTTG-TCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG accatccctttaaattaccaaccatccccctgtgtgtgcttggcttgcagGTACCCTAGGTGTGACCTTGcTCATCCTGTAGTGTGCCTGGCACCACACACACTTTTGAGCTTGCAGCTGATGAAATAGAGTTGGGCTTGGgtgagcacactgtcataatgcatcttactttgtgtctgatgtaactcagc Alignment from Spaln_nt2Genome GTACCCTAGGGGTGAGCTTG-TCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG accatccctttaaattaccaaccatccccctgtgtgtgcttggcttgcagGTACCCTAGGTGTGACCTTGCTCATCCTGTAGTGTGCCTGGCACCACACACACTTTTGAGCTTGCAGCTGATGAAATAGAGTTGGGCTTGGgtgagcacactgtcataatgcatcttactttgtgtctgatgtaactcagc Alignment from Pairagon GTACCCTAGGGGTGAGCTTG-TCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG accatccctttaaattaccaaccatccccctgtgtgtgcttggcttgcagGTACCCTAGGTGTGACCTTGCTCATCCTGTAGTGTGCCTGGCACCACACACACTTTTGAGCTTGCAGCTGATGAAATAGAGTTGGGCTTGGgtgagcacactgtcataatgcatcttactttgtgtctgatgtaactcagc Alignment from Exonerate_protein2genome GTACCCTAGGGGTGAGCTTG-TCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG accatccctttaaattaccaaccatccccctgtgtgtgcttggcttgcagGTACCCTAGGTGTGACCTTGCTCATCCTGTAGTGTGCCTGGCACCACACACACTTTTGAGCTTGCAGCTGATGAAATAGAGTTGGGCTTGGgtgagcacactgtcataatgcatcttactttgtgtctgatgtaactcagc Alignment from Exonerate_coding2genome GTACCCTAGGGGTGAGCTTG-TCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG accatccctttaaattaccaaccatccccctgtgtgtgcttggcttgcagGTACCCTAGGTGTGACCTTGCTCATCCTGTAGTGTGCCTGGCACCACACACACTTTTGAGCTTGCAGCTGATGAAATAGAGTTGGGCTTGGgtgagcacactgtcataatgcatcttactttgtgtctgatgtaactcagc Alignment from GeneWise GTACCCTAGGGGTGAGCTTG-TCATCCTGCAGTGTCCCTGGCGCCACACACACCTTTGAGCTTGCAGCTGATGAAATAGAGCTAGGCCTGG accatccctttaaattaccaaccatccccctgtgtgtgcttggcttgcagGTACCCTAGGTGTGACCTTGCTCATCCTGTAGTGTGCCTGGCACCACACACACTTTTGAGCTTGCAGCTGATGAAATAGAGTTGGGCTTGGgtgagcacactgtcataatgcatcttactttgtgtctgatgtaactcagc #### Ddb1_ID2930_15 --> 2 - 1 Original Alignment agATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGG-CTCAACATCGAGACAg tgatccatcctgatgaccacctagtaagctttctcccttgtttgatgcagagATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCCTCAATATTGAGACAggtgagcctgaagattgttttagtgctgggtattttccgtaataaggatcc Alignment from CESAR agATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGG-CTCAACATCGAGACAg tgatccatcctgatgaccacctagtaagctttctcccttgtttgatgcagagATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCCTCAATATTGAGACAggtgagcctgaagattgttttagtgctgggtattttccgtaataaggatcc Alignment from Spaln_aa2Genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGG-CTCAACATCGAGACAG tgatccatcctgatgaccacctagtaagctttctcccttgtttgatgcagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGcCTCAATATTGAGACAGgtgagcctgaagattgttttagtgctgggtattttccgtaataaggatcc Alignment from Spaln_nt2Genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGC-TCAACATCGAGACAG tgatccatcctgatgaccacctagtaagctttctcccttgtttgatgcagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCCTCAATATTGAGACAGgtgagcctgaagattgttttagtgctgggtattttccgtaataaggatcc Alignment from Pairagon AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGG-CTCAACATCGAGACAG tgatccatcctgatgaccacctagtaagctttctcccttgtttgatgcagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCCTCAATATTGAGACAGgtgagcctgaagattgttttagtgctgggtattttccgtaataaggatcc Alignment from Exonerate_protein2genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTT-GGGCTCAACATCGAGACAG tgatccatcctgatgaccacctagtaagctttctcccttgtttgatgcagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCCTCAATATTGAGACAGgtgagcctgaagattgttttagtgctgggtattttccgtaataaggatcc Alignment from Exonerate_coding2genome AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTT-GGGCTCAACATCGAGACAG tgatccatcctgatgaccacctagtaagctttctcccttgtttgatgcagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCCTCAATATTGAGACAGgtgagcctgaagattgttttagtgctgggtattttccgtaataaggatcc Alignment from GeneWise AGATCATTCCTCGATCCATCCTGATGACCACTTTTGAGAGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGG-CTCAACATCGAGACAG tgatccatcctgatgaccacctagtaagctttctcccttgtttgatgcagAGATCATTCCTCGATCCATACTGATGACCACTTTTGAAGGTAGCCACTACCTCCTTTGTGCCTTGGGAGATGGGGCTCTTTTCTACTTTGGGCCTCAATATTGAGACAGgtgagcctgaagattgttttagtgctgggtattttccgtaataaggatcc #### Ddb1_ID2932_17 --> 1 - 2 Original Alignment tCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAG-CTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCag tattgtagctacaattggaccctaaaatggaggattctctgttttcacagtCTGGCATTGGCCAATAACAGTACTCTCACAATTGGTACCATTGATGAAATGCAGAAGCCTCCACATTCGGACAGTCCCCCTCTATGAGTCTCCTaggtaaggttacacctgagaagtgggagagggggagggttagtgaaggtttc Alignment from CESAR tCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAG-CTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCag tattgtagctacaattggaccctaaaatggaggattctctgttttcacagtCTGGCATTGGCCAATAACAGTACTCTCACAATTGGTACCATTGATGAAATGCAGAAGCCTCCACATTCGGACAGTCCCCCTCTATGAGTCTCCTaggtaaggttacacctgagaagtgggagagggggagggttagtgaaggtttc Alignment from Spaln_aa2Genome TCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAG-CTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tattgtagctacaattggaccctaaaatggaggattctctgttttcacagTCTGGCATTGGCCAATAACAGTACTCTCACAATTGGTACCATTGATGAAATGCAGAAGcCTCCACATTCGGACAGTCCCCCTCTATGAGTCTCCTAGgtaaggttacacctgagaagtgggagagggggagggttagtgaaggtttc Alignment from Spaln_nt2Genome TCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAG-CTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tattgtagctacaattggaccctaaaatggaggattctctgttttcacagTCTGGCATTGGCCAATAACAGTACTCTCACAATTGGTACCATTGATGAAATGCAGAAGCCTCCACATTCGGACAGTCCCCCTCTATGAGTCTCCTAGgtaaggttacacctgagaagtgggagagggggagggttagtgaaggtttc Alignment from Pairagon TCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAG-CTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tattgtagctacaattggaccctaaaatggaggattctctgttttcacagTCTGGCATTGGCCAATAACAGTACTCTCACAATTGGTACCATTGATGAAATGCAGAAGCCTCCACATTCGGACAGTCCCCCTCTATGAGTCTCCTAGgtaaggttacacctgagaagtgggagagggggagggttagtgaaggtttc Alignment from Exonerate_protein2genome TCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAG-CTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tattgtagctacaattggaccctaaaatggaggattctctgttttcacagTCTGGCATTGGCCAATAACAGTACTCTCACAATTGGTACCATTGATGAAATGCAGAAGCCTCCACATTCGGACAGTCCCCCTCTATGAGTCTCCTAGgtaaggttacacctgagaagtgggagagggggagggttagtgaaggtttc Alignment from Exonerate_coding2genome TCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAG-CTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tattgtagctacaattggaccctaaaatggaggattctctgttttcacagTCTGGCATTGGCCAATAACAGTACTCTCACAATTGGTACCATTGATGAAATGCAGAAGCCTCCACATTCGGACAGTCCCCCTCTATGAGTCTCCTAGgtaaggttacacctgagaagtgggagagggggagggttagtgaaggtttc Alignment from GeneWise TCTGGCATTGGCCAATAACAGCACTCTCACCATTGGCACCATCGATGAGATCCAGAAG-CTCCATATTCGCACAGTTCCCCTCTATGAGTCTCCCAG tattgtagctacaattggaccctaaaatggaggattctctgttttcacagTCTGGCATTGGCCAATAACAGTACTCTCACAATTGGTACCATTGATGAAATGCAGAAGCCTCCACATTCGGACAGTCCCCCTCTATGAGTCTCCTAGgtaaggttacacctgagaagtgggagagggggagggttagtgaaggtttc #### Ddb1_ID2935_20 --> 2 - 1 Original Alignment tgCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGAC-CCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATg ggggtggttggaagccagtgtccataaaatattttctgtttgtttcaaagtgCTTCACGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTAAATTGGGTAAAGACCCCCAACACTTACTTCATTGTTGGTACAGCAATGGTATATCCAGAAGAGGCAGAGCCCAAGCAGGGTCACATTGTGGTCTTCCAGTATTCTGATggtgagccaccagtctctggggtattaaagattgaaattctcatagagaca Alignment from CESAR tgCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCC-AACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATg ggggtggttggaagccagtgtccataaaatattttctgtttgtttcaaagtgCTTCACGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTAAATTGGGTAAAGACCCCCAACACTTACTTCATTGTTGGTACAGCAATGGTATATCCAGAAGAGGCAGAGCCCAAGCAGGGTCACATTGTGGTCTTCCAGTATTCTGATggtgagccaccagtctctggggtattaaagattgaaattctcatagagaca Alignment from Spaln_aa2Genome TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCC-AACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG ggggtggttggaagccagtgtccataaaatattttctgtttgtttcaaagTGCTTCACGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTAAATTGGGTAAAGACCCCcAACACTTACTTCATTGTTGGTACAGCAATGGTATATCCAGAAGAGGCAGAGCCCAAGCAGGGTCACATTGTGGTCTTCCAGTATTCTGATGgtgagccaccagtctctggggtattaaagattgaaattctcatagagaca Alignment from Spaln_nt2Genome TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGA-CCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG ggggtggttggaagccagtgtccataaaatattttctgtttgtttcaaagTGCTTCACGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTAAATTGGGTAAAGACCCCCAACACTTACTTCATTGTTGGTACAGCAATGGTATATCCAGAAGAGGCAGAGCCCAAGCAGGGTCACATTGTGGTCTTCCAGTATTCTGATGgtgagccaccagtctctggggtattaaagattgaaattctcatagagaca Alignment from Pairagon TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGA-CCCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG ggggtggttggaagccagtgtccataaaatattttctgtttgtttcaaagTGCTTCACGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTAAATTGGGTAAAGACCCCCAACACTTACTTCATTGTTGGTACAGCAATGGTATATCCAGAAGAGGCAGAGCCCAAGCAGGGTCACATTGTGGTCTTCCAGTATTCTGATGgtgagccaccagtctctggggtattaaagattgaaattctcatagagaca Alignment from Exonerate_protein2genome TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGAC-CCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG ggggtggttggaagccagtgtccataaaatattttctgtttgtttcaaagTGCTTCACGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTAAATTGGGTAAAGACCCCCAACACTTACTTCATTGTTGGTACAGCAATGGTATATCCAGAAGAGGCAGAGCCCAAGCAGGGTCACATTGTGGTCTTCCAGTATTCTGATGgtgagccaccagtctctggggtattaaagattgaaattctcatagagaca Alignment from Exonerate_coding2genome TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGAC-CCCAACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG ggggtggttggaagccagtgtccataaaatattttctgtttgtttcaaagTGCTTCACGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTAAATTGGGTAAAGACCCCCAACACTTACTTCATTGTTGGTACAGCAATGGTATATCCAGAAGAGGCAGAGCCCAAGCAGGGTCACATTGTGGTCTTCCAGTATTCTGATGgtgagccaccagtctctggggtattaaagattgaaattctcatagagaca Alignment from GeneWise TGCTTCACGCCCATCAGTTTCTACAAAACGAGTATGCCCTCAGCCTGGTCTCCTGCAAGTTGGGTAAAGACCCC-AACACTTACTTCATTGTGGGCACAGCCATGGTATATCCTGAAGAGGCAGAGCCCAAGCAGGGTCGTATTGTGGTCTTCCAGTATTCAGATG ggggtggttggaagccagtgtccataaaatattttctgtttgtttcaaagTGCTTCACGCCCATCAGTTTCTTCAAAATGAGTATGCCCTTAGCTTGGTCTCCTGTAAATTGGGTAAAGACCCCCAACACTTACTTCATTGTTGGTACAGCAATGGTATATCCAGAAGAGGCAGAGCCCAAGCAGGGTCACATTGTGGTCTTCCAGTATTCTGATGgtgagccaccagtctctggggtattaaagattgaaattctcatagagaca #### Dkk1_ID6482_3 --> 2 - 1 Original Alignment gaATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAAC-CTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAg tcaaaggagcagggaagcaactccccacgtttcacccttgtcatcttcaggtATATGCATGCCCTCTGAGCATAGCCACTTCCCATGCGGGGAAGTTGAAGAAAGAACTATTGAAATGCCTTGGTAATGACCACAACGCTGCTGCAGGGGATGGATTTCCCAGAAGGACTGCACTGGCTTCGAAGATTTATCATACTAAAggtaagtaagcaacttaagaacttcacacttaatttacaaaaacactgaga Alignment from CESAR gaATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAA-AACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAg tcaaaggagcagggaagcaactccccacgtttcacccttgtcatcttcaggtATATGCATGCCCTCTGAGCATAGCCACTTCCCATGCGGGGAAGTTGAAGAAAGAACTATTGAAATGCCTTGGTAATGACCACAACGCTGCTGCAGGGGATGGATTTCCCAGAAGGACTGCACTGGCTTCGAAGATTTATCATACTAAAggtaagtaagcaacttaagaacttcacacttaatttacaaaaacactgaga Alignment from Spaln_aa2Genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAA-AACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcagggaagcaactccccacgtttcacccttgtcatcttcagGTATATGCATGCCCTCTGAGCATAGCCACTTCCCATGCGGGGAAGTTGAAGAAAGAACTATTGAAaTGCCTTGGTAATGACCACAACGCTGCTGCAGGGGATGGATTTCCCAGAAGGACTGCACTGGCTTCGAAGATTTATCATACTAAAGgtaagtaagcaacttaagaacttcacacttaatttacaaaaacactgaga Alignment from Spaln_nt2Genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAA-CCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcagggaagcaactccccacgtttcacccttgtcatcttcagGTATATGCATGCCCTCTGAGCATAGCCACTTCCCATGCGGGGAAGTTGAAGAAAGAACTATTGAAATGCCTTGGTAATGACCACAACGCTGCTGCAGGGGATGGATTTCCCAGAAGGACTGCACTGGCTTCGAAGATTTATCATACTAAAGgtaagtaagcaacttaagaacttcacacttaatttacaaaaacactgaga Alignment from Pairagon GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAA-ACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcagggaagcaactccccacgtttcacccttgtcatcttcagGTATATGCATGCCCTCTGAGCATAGCCACTTCCCATGCGGGGAAGTTGAAGAAAGAACTATTGAAATGCCTTGGTAATGACCACAACGCTGCTGCAGGGGATGGATTTCCCAGAAGGACTGCACTGGCTTCGAAGATTTATCATACTAAAGgtaagtaagcaacttaagaacttcacacttaatttacaaaaacactgaga Alignment from Exonerate_protein2genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAAC-CTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcagggaagcaactccccacgtttcacccttgtcatcttcagGTATATGCATGCCCTCTGAGCATAGCCACTTCCCATGCGGGGAAGTTGAAGAAAGAACTATTGAAATGCCTTGGTAATGACCACAACGCTGCTGCAGGGGATGGATTTCCCAGAAGGACTGCACTGGCTTCGAAGATTTATCATACTAAAGgtaagtaagcaacttaagaacttcacacttaatttacaaaaacactgaga Alignment from Exonerate_coding2genome GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAAAAC-CTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcagggaagcaactccccacgtttcacccttgtcatcttcagGTATATGCATGCCCTCTGAGCATAGCCACTTCCCATGCGGGGAAGTTGAAGAAAGAACTATTGAAATGCCTTGGTAATGACCACAACGCTGCTGCAGGGGATGGATTTCCCAGAAGGACTGCACTGGCTTCGAAGATTTATCATACTAAAGgtaagtaagcaacttaagaacttcacacttaatttacaaaaacactgaga Alignment from GeneWise GAATATGCATGCCCTCTGACCACAGCCATTTTCCTCGAGGGGAAATTGAGGAAAGCATCATTGAA-AACCTTGGTAATGACCACAACGCCGCCGCGGGGGATGGATATCCCAGAAGAACCACACTGACTTCAAAAATATATCACACCAAAG tcaaaggagcagggaagcaactccccacgtttcacccttgtcatcttcagGTATATGCATGCCCTCTGAGCATAGCCACTTCCCATGCGGGGAAGTTGAAGAAAGAACTATTGAAATGCCTTGGTAATGACCACAACGCTGCTGCAGGGGATGGATTTCCCAGAAGGACTGCACTGGCTTCGAAGATTTATCATACTAAAGgtaagtaagcaacttaagaacttcacacttaatttacaaaaacactgaga #### Dock8_ID5396_17 --> 1 - 0 Original Alignment gTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTC-ACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG acctgtgcctcacatcacagttgattccacacctgtaactctctctgcaggTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCAGCCAAGCTGCACAGTGAATCATCATCTTCTCTTCACCTTCTATCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCAgtatgctaacaagaactggtggtttgctaccttccagtctggtttccgat Alignment from CESAR gTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTC-ACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG acctgtgcctcacatcacagttgattccacacctgtaactctctctgcaggTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCAGCCAAGCTGCACAGTGAATCATCATCTTCTCTTCACCTTCTATCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCAgtatgctaacaagaactggtggtttgctaccttccagtctggtttccgat Alignment from Spaln_aa2Genome GTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTC-ACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG acctgtgcctcacatcacagttgattccacacctgtaactctctctgcagGTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCAGCCAAGCTGcACAGTGAATCATCATCTTCTCTTCACCTTCTATCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCAgtatgctaacaagaactggtggtttgctaccttccagtctggtttccgat Alignment from Spaln_nt2Genome GTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCT-CACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG acctgtgcctcacatcacagttgattccacacctgtaactctctctgcagGTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCAGCCAAGCTGCACAGTGAATCATCATCTTCTCTTCACCTTCTATCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCAgtatgctaacaagaactggtggtttgctaccttccagtctggtttccgat Alignment from Pairagon GTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCT-CACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG acctgtgcctcacatcacagttgattccacacctgtaactctctctgcagGTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCAGCCAAGCTGCACAGTGAATCATCATCTTCTCTTCACCTTCTATCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCAgtatgctaacaagaactggtggtttgctaccttccagtctggtttccgat Alignment from Exonerate_protein2genome GTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTC-ACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG acctgtgcctcacatcacagttgattccacacctgtaactctctctgcagGTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCAGCCAAGCTGCACAGTGAATCATCATCTTCTCTTCACCTTCTATCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCAgtatgctaacaagaactggtggtttgctaccttccagtctggtttccgat Alignment from Exonerate_coding2genome GTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAGCTC-ACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG acctgtgcctcacatcacagttgattccacacctgtaactctctctgcagGTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCAGCCAAGCTGCACAGTGAATCATCATCTTCTCTTCACCTTCTATCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCAgtatgctaacaagaactggtggtttgctaccttccagtctggtttccgat Alignment from GeneWise GTCTCCTGACTTTTACGAAGAAGTGAAAATTAAGCTCCCTGCCAAG-CTCACAGTGAATCATCACCTCCTCTTCACCTTCTACCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAAAGCCTTCTGGGGTACTCG acctgtgcctcacatcacagttgattccacacctgtaactctctctgcagGTCTCCTGACTTTTATGAAGAAGTGAAAATTAAGCTACCAGCCAAGCTGCACAGTGAATCATCATCTTCTCTTCACCTTCTATCACATCAGCTGTCAGCAGAAGCAAGGGGCCTCCGGAGAGAGCCTTCTGGGGTACTCAgtatgctaacaagaactggtggtttgctaccttccagtctggtttccgat #### Dpf2_ID1309_5 --> 0 - 0 Original Alignment CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAG-CGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTG aattcagttatgtgtgagctatacatgtttactgaggtgacttttcacagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTAGATGATGAGGACTATGAGGAAGATACACCAAAGCCGTCGGGGAAAGGGCAAGTCCAAGgtgagcagtttatcttattcttttttttttattcaaagGGTAAGGGTGTT Alignment from CESAR CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAG-CGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTG aattcagttatgtgtgagctatacatgtttactgaggtgacttttcacagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTAGATGATGAGGACTATGAGGAAGATACACCAAAGCCGTCGGGGAAAGGGCAAGTCCAAGgtgagcagtttatctttaacttaacttttctcttttagGGTAAGGGTGTT Alignment from Spaln_aa2Genome CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAG-CGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTG aattcagttatgtgtgagctatacatgtttactgaggtgacttttcacagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTAGATGATGAGGACTATGAGGAAGATACACCAAAGcCGTCGGGGAAAGGGCAAGTCCAAGgtgagcagtttatcttattcttttttttttattcaaagGGTAAGGGTGTT Alignment from Spaln_nt2Genome CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAG-CGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTG aattcagttatgtgtgagctatacatgtttactgaggtgacttttcacagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTAGATGATGAGGACTATGAGGAAGATACACCAAAGCCGTCGGGGAAAGGGCAAGTCCAAGgtgagcagtttatcttattcttttttttttattcaaagGGTAAGGGTGTT Alignment from Pairagon CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAG-CGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTG aattcagttatgtgtgagctatacatgtttactgaggtgacttttcacagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTAGATGATGAGGACTATGAGGAAGATACACCAAAGCCGTCGGGGAAAGGGCAAGTCCAAGgtgagcagtttatcttattcttttttttttattcaaagGGTAAGGGTGTT Alignment from Exonerate_protein2genome CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAG-CGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTG aattcagttatgtgtgagctatacatgtttactgaggtgacttttcacagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTAGATGATGAGGACTATGAGGAAGATACACCAAAGCCGTCGGGGAAAGGGCAAGTCCAAGgtgagcagtttatcttattcttttttttttattcaaagGGTAAGGGTGTT Alignment from Exonerate_coding2genome CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAG-CGTCGGGGGAAGGGGAAGTCCAAG AGTAAGGGTGTG aattcagttatgtgtgagctatacatgtttactgaggtgacttttcacagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTAGATGATGAGGACTATGAGGAAGATACACCAAAGCCGTCGGGGAAAGGGCAAGTCCAAGgtgagcagtttatcttattcttttttttttattcaaagGGTAAGGGTGTT Alignment from GeneWise CGGATCATTGAACCCGATGACTTCCTTGATGACCTTGATGATGAGGACTATGAAGAAGATACGCCAAAGCGTCGGGGGAAGGGGAAG---------------------------------------TCCAAGAGTAAGGGTGTG aattcagttatgtgtgagctatacatgtttactgaggtgacttttcacagCGGGTCATTGAACCTGATGACTTCTTTGATGACCTAGATGATGAGGACTATGAGGAAGATACACCAAAGCCGTCGGGGAAAGGGCAAGTCCAAGGTGAGCAGTTTATCTTATTCTTTTTTTTTTATTCAAAGGGTAAGGGTGTT #### Dpp3_ID740_13 --> 0 - 2 Original Alignment ATCCAGAGCTGG-TACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGga tggggcagacagctaatctctgatttattgcttcttaccatctcctgtagATTAAGAGCTGGCTACCGGAGTGGTGAGACTTGGGACAGTGAATCTAGCACCATTGCCTCTCGGTATGAAGAGTGTCATGCTGAGAGTGTGGGCCTGTATCTCTGT---ACCCCCCAAGTGTTGgagtaagtaaaatctccaaattcacaggatttcttgctttttatccgtacca Alignment from CESAR ATCCAGAGCTGG-TACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGga tggggcagacagctaatctctgatttattgcttcttaccatctcctgtagATTAAGAGCTGGCTACCGGAGTGGTGAGACTTGGGACAGTGAATCTAGCACCATTGCCTCTCGGTATGAAGAGTGTCATGCTGAGAGTGTGGGCCTGTATCTCTGT---ACCCCCCAAGTGTTGgagtaagtaaaatctccaaattcacaggattctcttcctatgctatatcaca Alignment from Spaln_aa2Genome C----CAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tggggcagacagctaatctctgatttattgcttcttaccatctcctgtagATTAAGAGCTGGCTACCGGAGTGGTGAGACTTGGGACAGTGAATCTAGCACCATTGCCTCTCGGTATGAAGAGTGTCATGCTGAGAGTGTGGGCCTGTATCTCTGT---ACCCCCCAAGTGTTGGAgtaagtaaaatctccaaattcacaggatttcttgctttttatccgtacca Alignment from Spaln_nt2Genome ATCCAGAGCTGG-TACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tggggcagacagctaatctctgatttattgcttcttaccatctcctgtagATTAAGAGCTGGCTACCGGAGTGGTGAGACTTGGGACAGTGAATCTAGCACCATTGCCTCTCGGTATGAAGAGTGTCATGCTGAGAGTGTGGGCCTGTATCTCTGT---ACCCCCCAAGTGTTGGAgtaagtaaaatctccaaattcacaggatttcttgctttttatccgtacca Alignment from Pairagon ATCCAGAGCTGG-TACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tggggcagacagctaatctctgatttattgcttcttaccatctcctgtagATTAAGAGCTGGCTACCGGAGTGGTGAGACTTGGGACAGTGAATCTAGCACCATTGCCTCTCGGTATGAAGAGTGTCATGCTGAGAGTGTGGGCCTGTATCTCTGT---ACCCCCCAAGTGTTGGAgtaagtaaaatctccaaattcacaggatttcttgctttttatccgtacca Alignment from Exonerate_protein2genome ATCCAGAGCTGG-TACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tggggcagacagctaatctctgatttattgcttcttaccatctcctgtagATTAAGAGCTGGCTACCGGAGTGGTGAGACTTGGGACAGTGAATCTAGCACCATTGCCTCTCGGTATGAAGAGTGTCATGCTGAGAGTGTGGGCCTGTATCTCTGT---ACCCCCCAAGTGTTGGAgtaagtaaaatctccaaattcacaggatttcttgctttttatccgtacca Alignment from Exonerate_coding2genome ATCCAGAGCTGG-TACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGAG tggggcagacagctaatctctgatttattgcttcttaccatctcctgtagATTAAGAGCTGGCTACCGGAGTGGTGAGACTTGGGACAGTGAATCTAGCACCATTGCCTCTCGGTATGAAGAGTGTCATGCTGAGAGTGTGGGCCTGTATCTCTGT---ACCCCCCAAGTGTTGGAGtaagtaaaatctccaaattcacaggatttcttgctttttatccgtacca Alignment from GeneWise -ATCCAGAGCTGGTACCGGAGTGGAGAGACGTGGGATAGCAAATTCAGCACCATTGCCTCCAGCTACGAAGAGTGCCGGGCCGAGAGTGTGGGCCTCTACCTCTGTCTCAACCCCCAAGTGCTGGA tggggcagacagctaatctctgatttattgcttcttaccatctcctgtagATTAAGAGCTGGCTACCGGAGTGGTGAGACTTGGGACAGTGAATCTAGCACCATTGCCTCTCGGTATGAAGAGTGTCATGCTGAGAGTGTGGGCCTGTATCTCTGT---ACCCCCCAAGTGTTGGAgtaagtaaaatctccaaattcacaggatttcttgctttttatccgtacca #### Dpp3_ID741_12 --> 0 - 0 Original Alignment GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAG-ACTGGGGAACAG aagtgctgggaggccctgaaaagctttgaacgttaaacttttaatggcagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGGTAATCAACCCAGAGCACTGGGGAGCAGgtgtgtaatacattatggggtgagggaattgcaatggggcagacagctaa Alignment from CESAR GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAG-ACTGGGGAACAG aagtgctgggaggccctgaaaagctttgaacgttaaacttttaatggcagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGGTAATCAACCCAGAGCACTGGGGAGCAGgtgtgtaatacattatggggtgagggaattgcaatggggcagacagctaa Alignment from Spaln_aa2Genome GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACT---GGGGAACAG aagtgctgggaggccctgaaaagctttgaacgttaaacttttaatggcagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGGTAATCAACCCAGAGCACTGGGGAGCAGGTgtgtaatacattatggggtgagggaattgcaatggggcagacagctaa Alignment from Spaln_nt2Genome GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAG-ACTGGGGAACAG aagtgctgggaggccctgaaaagctttgaacgttaaacttttaatggcagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGGTAATCAACCCAGAGCACTGGGGAGCAGgtgtgtaatacattatggggtgagggaattgcaatggggcagacagctaa Alignment from Pairagon GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAG-ACTGGGGAACAG aagtgctgggaggccctgaaaagctttgaacgttaaacttttaatggcagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGGTAATCAACCCAGAGCACTGGGGAGCAGgtgtgtaatacattatggggtgagggaattgcaatggggcagacagctaa Alignment from Exonerate_protein2genome GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAG-ACTGGGGAACAG aagtgctgggaggccctgaaaagctttgaacgttaaacttttaatggcagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGGTAATCAACCCAGAGCACTGGGGAGCAGgtgtgtaatacattatggggtgagggaattgcaatggggcagacagctaa Alignment from Exonerate_coding2genome GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAG-ACTGGGGAACAG aagtgctgggaggccctgaaaagctttgaacgttaaacttttaatggcagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGGTAATCAACCCAGAGCACTGGGGAGCAGgtgtgtaatacattatggggtgagggaattgcaatggggcagacagctaa Alignment from GeneWise GATGAGAAAGGTGCTTTCAACTTTGACAAGGAGACTGTGATCAACCCAGAGACT---GGGGAACAG aagtgctgggaggccctgaaaagctttgaacgttaaacttttaatggcagGATGAGAAAGGTGCTTTCAACTTTGACAAGGAAACGGTAATCAACCCAGAGCACTGGGGAGCAGGTgtgtaatacattatggggtgagggaattgcaatggggcagacagctaa #### Dpp3_ID743_10 --> 2 - 0 Original Alignment acGATGACCTGAGACAGACAGAAGGCTTTAAGAAT-GTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaattcagtctacttctgggtgaatggttttattttccagacGATGACCTGAGACAAACAGAAGGCTTTAAGAACCGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACATTCTTGGAGGAGGAAGACAAGgtacgtatggccccccaagcttagggcgtggctgttctagtcctggacaa Alignment from CESAR acGATGACCTGAGACAGACAGAAGGCTTTAAGAAT-GTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaattcagtctacttctgggtgaatggttttattttccagacGATGACCTGAGACAAACAGAAGGCTTTAAGAACCGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACATTCTTGGAGGAGGAAGACAAGgtacgtatggccccccaagcttagggcgtggctgttctagtcctggacaa Alignment from Spaln_aa2Genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAAT-GTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaattcagtctacttctgggtgaatggttttattttccagACGATGACCTGAGACAAACAGAAGGCTTTAAGAACcGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACATTCTTGGAGGAGGAAGACAAGgtacgtatggccccccaagcttagggcgtggctgttctagtcctggacaa Alignment from Spaln_nt2Genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAAT-GTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaattcagtctacttctgggtgaatggttttattttccagACGATGACCTGAGACAAACAGAAGGCTTTAAGAACCGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACATTCTTGGAGGAGGAAGACAAGgtacgtatggccccccaagcttagggcgtggctgttctagtcctggacaa Alignment from Pairagon ACGATGACCTGAGACAGACAGAAGGCTTTAAGAA-TGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaattcagtctacttctgggtgaatggttttattttccagACGATGACCTGAGACAAACAGAAGGCTTTAAGAACCGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACATTCTTGGAGGAGGAAGACAAGgtacgtatggccccccaagcttagggcgtggctgttctagtcctggacaa Alignment from Exonerate_protein2genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAAT-GTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaattcagtctacttctgggtgaatggttttattttccagACGATGACCTGAGACAAACAGAAGGCTTTAAGAACCGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACATTCTTGGAGGAGGAAGACAAGgtacgtatggccccccaagcttagggcgtggctgttctagtcctggacaa Alignment from Exonerate_coding2genome ACGATGACCTGAGACAGACAGAAGGCTTTAAGAAT-GTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaattcagtctacttctgggtgaatggttttattttccagACGATGACCTGAGACAAACAGAAGGCTTTAAGAACCGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACATTCTTGGAGGAGGAAGACAAGgtacgtatggccccccaagcttagggcgtggctgttctagtcctggacaa Alignment from GeneWise ACGATGACCTGAGACAGACAGAAGGCTTTAAGAAT-GTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGGGAGAAGCTCACGTTCTTGGAGGAGGAAGACAAG ccttcagtacaaattcagtctacttctgggtgaatggttttattttccagACGATGACCTGAGACAAACAGAAGGCTTTAAGAACCGTATCGCTGGGGAATGTGCTGGCTGTGGCCTATGCCGCAAAGCGAGAGAAGCTCACATTCTTGGAGGAGGAAGACAAGgtacgtatggccccccaagcttagggcgtggctgttctagtcctggacaa #### Dpp3_ID746_7 --> 0 - 2 Original Alignment GCTTATGCAGCCAACAGCCAC-CAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGag gactgtgcggatcaatcaaagtgaggattccttcactttttgtttcatagGCCTATGCAGCCAACTGCCACCCAGAAACAAATGCTGTCCCAGTATGTGGAAAGCTTCACTGAGGGATCCATTGATGCCCATAAGAGGGGTTCCCATTTCTGGATCCAGGACAAAGGCCCCATTGTAAAAaggtgagttgtcatccaagcctccaactccccaatatctcttccaatgcacc Alignment from CESAR GCTTATGCAGCCAACAGCCAC-CAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGag gactgtgcggatcaatcaaagtgaggattccttcactttttgtttcatagGCCTATGCAGCCAACTGCCACCCAGAAACAAATGCTGTCCCAGTATGTGGAAAGCTTCACTGAGGGATCCATTGATGCCCATAAGAGGGGTTCCCATTTCTGGATCCAGGACAAAGGCCCCATTGTAAAAaggtgagttgtcatccaagcctccaactccccaatatctcttccaatgcacc Alignment from Spaln_aa2Genome GCCAACAGCCACCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gactgtgcggatcaatcaaagtgaggattccttcactttttgtttcataggcctatgcagCCAACTGCCACCCAGAAACAAATGCTGTCCCAGTATGTGGAAAGCTTCACTGAGGGATCCATTGATGCCCATAAGAGGGGTTCCCATTTCTGGATCCAGGACAAAGGCCCCATTGTAAAAAGgtgagttgtcatccaagcctccaactccccaatatctcttccaatgcacc Alignment from Spaln_nt2Genome GCTTATGCAGCCAACAGCCACC-AGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gactgtgcggatcaatcaaagtgaggattccttcactttttgtttcatagGCCTATGCAGCCAACTGCCACCCAGAAACAAATGCTGTCCCAGTATGTGGAAAGCTTCACTGAGGGATCCATTGATGCCCATAAGAGGGGTTCCCATTTCTGGATCCAGGACAAAGGCCCCATTGTAAAAAGgtgagttgtcatccaagcctccaactccccaatatctcttccaatgcacc Alignment from Pairagon ------------------------------------------------AGGCTTATGCAGCCAACAGCCA-CCAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG GACTGTGCGGATCAATCAAAGTGAGGATTCCTTCACTTTTTGTTTCATAGGCCTATGCAGCCAACTGCCACCCAGAAACAAATGCTGTCCCAGTATGTGGAAAGCTTCACTGAGGGATCCATTGATGCCCATAAGAGGGGTTCCCATTTCTGGATCCAGGACAAAGGCCCCATTGTAAAAAGgtgagttgtcatccaagcctccaactccccaatatctcttccaatgcacc Alignment from Exonerate_protein2genome GCTTATGCAGCCAACAGCCAC-CAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gactgtgcggatcaatcaaagtgaggattccttcactttttgtttcatagGCCTATGCAGCCAACTGCCACCCAGAAACAAATGCTGTCCCAGTATGTGGAAAGCTTCACTGAGGGATCCATTGATGCCCATAAGAGGGGTTCCCATTTCTGGATCCAGGACAAAGGCCCCATTGTAAAAAGgtgagttgtcatccaagcctccaactccccaatatctcttccaatgcacc Alignment from Exonerate_coding2genome GCTTATGCAGCCAACAGCCAC-CAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gactgtgcggatcaatcaaagtgaggattccttcactttttgtttcatagGCCTATGCAGCCAACTGCCACCCAGAAACAAATGCTGTCCCAGTATGTGGAAAGCTTCACTGAGGGATCCATTGATGCCCATAAGAGGGGTTCCCATTTCTGGATCCAGGACAAAGGCCCCATTGTAAAAAGgtgagttgtcatccaagcctccaactccccaatatctcttccaatgcacc Alignment from GeneWise GCTTATGCAGCCAACAGCCAC-CAGGAGCAAATGCTGGCTCAGTACGTGGAGAGCTTCACCCAGGGCTCCATTGAGGCCCATAAGAGGGGCTCCCGCTTCTGGATTCAGGACAAAGGCCCCATTGTAGAGAG gactgtgcggatcaatcaaagtgaggattccttcactttttgtttcatagGCCTATGCAGCCAACTGCCACCCAGAAACAAATGCTGTCCCAGTATGTGGAAAGCTTCACTGAGGGATCCATTGATGCCCATAAGAGGGGTTCCCATTTCTGGATCCAGGACAAAGGCCCCATTGTAAAAAGgtgagttgtcatccaagcctccaactccccaatatctcttccaatgcacc #### Drap1_ID985_5 --> 1 - 0 Original Alignment CCTCGAag gGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGC-ACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAaggtgaggagcaaggggtctgcgagtactctgtactttggacaggGGCCGTAAACCGGGTAGCAGTGGTAAGAAAAATGGCGGCCACAGGAAGCAAGGGTAAAGATAAAAAGCTCTCTGGGACAGACTCCGAACAAGAGgtgaatgggctggtaggtaatgggttatgtctgcttttttgtaccttata Alignment from CESAR CCTCGAag gGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGC-ACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAaggtacaaagcaaggggtctgcgagtactctgtactttggacaggGGCCGTAAACCGGGTAGCAGTGGTAAGAAAAATGGCGGCCACAGGAAGCAAGGGTAAAGATAAAAAGCTCTCTGGGACAGACTCCGAACAAGAGgtgaatgggctggtaggtaatgggttatgtctgcttttttgtaccttata Alignment from Spaln_aa2Genome CCTCGAAG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGC-ACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtgaggagcaaggggtctgcgagtactctgtactttggacagGGGCCGTAAACCGGGTAGCAGTGGTAAGAAAAATGGCGGCcACAGGAAGCAAGGGTAAAGATAAAAAGCTCTCTGGGACAGACTCCGAACAAGAGgtgaatgggctggtaggtaatgggttatgtctgcttttttgtaccttata Alignment from Spaln_nt2Genome CCTCGAAG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGC-ACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtgaggagcaaggggtctgcgagtactctgtactttggacagGGGCCGTAAACCGGGTAGCAGTGGTAAGAAAAATGGCGGCCACAGGAAGCAAGGGTAAAGATAAAAAGCTCTCTGGGACAGACTCCGAACAAGAGgtgaatgggctggtaggtaatgggttatgtctgcttttttgtaccttata Alignment from Pairagon CCTCGAAG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGG-CACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtgaggagcaaggggtctgcgagtactctgtactttggacagGGGCCGTAAACCGGGTAGCAGTGGTAAGAAAAATGGCGGCCACAGGAAGCAAGGGTAAAGATAAAAAGCTCTCTGGGACAGACTCCGAACAAGAGgtgaatgggctggtaggtaatgggttatgtctgcttttttgtaccttata Alignment from Exonerate_protein2genome CCTCGAAG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGC-ACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtgaggagcaaggggtctgcgagtactctgtactttggacagGGGCCGTAAACCGGGTAGCAGTGGTAAGAAAAATGGCGGCCACAGGAAGCAAGGGTAAAGATAAAAAGCTCTCTGGGACAGACTCCGAACAAGAGgtgaatgggctggtaggtaatgggttatgtctgcttttttgtaccttata Alignment from Exonerate_coding2genome CCTCGAAGGGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCAAA---GGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGG CCTCGAAGGTGAGGAGCAAGGGGTCTGCGAGTACTCTGTACTTTGGACAGGGGCCGTAAACCGGGTAGCAGTGGTAAGAAAAATGGCGGCCACAGGAAGCAAGggtaaagataaaaagctctctgggacagactccgaacaagaggtgaatgggctggtaggtaatgggttatgtctgcttttttgtaccttata Alignment from GeneWise CCTCGAAG GGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGC-ACGGGAAGCAAAGGCAAAGACAAGAAGCTGTCCGGGACAGACTCTGAGCAGGAG CCTCGAAGgtgaggagcaaggggtctgcgagtactctgtactttggacagGGGCCGTAAACCGGGTAGCAGTGGTAAGAAAAATGGCGGCCACAGGAAGCAAGGGTAAAGATAAAAAGCTCTCTGGGACAGACTCCGAACAAGAGgtgaatgggctggtaggtaatgggttatgtctgcttttttgtaccttata #### Drap1_ID986_4 --> 1 - 2 Original Alignment gAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTG-GCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAag gGGCCGGA tccccaagtgtttgagaggcagccgacctttggctttcccttctctccaggATGCAATGCATTGATGTTGAGCAGCAATTTGACTTCTTGAAAGCGCTAGTGCGCATCAGTACCTGACATGCAGGGGGACAGGGAAGACAACCATGTAGATGGGGAAAAGGGACCTCGAaggtacaaagcaaggggtctgcgtccttcgtgtttatcttctaggGGCCGTA Alignment from CESAR gAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTG-GCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAag gGGCCGGA tccccaagtgtttgagaggcagccgacctttggctttcccttctctccaggATGCAATGCATTGATGTTGAGCAGCAATTTGACTTCTTGAAAGCGCTAGTGCGCATCAGTACCTGACATGCAGGGGGACAGGGAAGACAACCATGTAGATGGGGAAAAGGGACCTCGAaggtacaaagcaaggggtctgcgagtactctgtactttggacaggGGCCGTA Alignment from Spaln_aa2Genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTG-GCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GGGCCGGA tccccaagtgtttgagaggcagccgacctttggctttcccttctctccagGATGCAATGCATTGATGTTGAGCAGCAATTTGACTTCTTGAAAGCGCTAGTGcGCATCAGTACCTGACATGCAGGGGGACAGGGAAGACAACCATGTAGATGGGGAAAAGGGACCTCGAAGgtacaaagcaaggggtctgcgtccttcgtgtttatcttctagGGGCCGTA Alignment from Spaln_nt2Genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTG-GCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GGGCCGGA tccccaagtgtttgagaggcagccgacctttggctttcccttctctccagGATGCAATGCATTGATGTTGAGCAGCAATTTGACTTCTTGAAAGCGCTAGTGCGCATCAGTACCTGACATGCAGGGGGACAGGGAAGACAACCATGTAGATGGGGAAAAGGGACCTCGAAGgtacaaagcaaggggtctgcgtccttcgtgtttatcttctagGGGCCGTA Alignment from Pairagon GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTG-GCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GGGCCGGA tccccaagtgtttgagaggcagccgacctttggctttcccttctctccagGATGCAATGCATTGATGTTGAGCAGCAATTTGACTTCTTGAAAGCGCTAGTGCGCATCAGTACCTGACATGCAGGGGGACAGGGAAGACAACCATGTAGATGGGGAAAAGGGACCTCGAAGgtacaaagcaaggggtctgcgtccttcgtgtttatcttctagGGGCCGTA Alignment from Exonerate_protein2genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTG-GCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAG GGGCCGGA tccccaagtgtttgagaggcagccgacctttggctttcccttctctccagGATGCAATGCATTGATGTTGAGCAGCAATTTGACTTCTTGAAAGCGCTAGTGCGCATCAGTACCTGACATGCAGGGGGACAGGGAAGACAACCATGTAGATGGGGAAAAGGGACCTCGAAGgtacaaagcaaggggtctgcgtccttcgtgtttatcttctagGGGCCGTA Alignment from Exonerate_coding2genome GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTG-GCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAGGGGCCGGAAACCGGGCAGCAGCGGCAGGAAGAACGGAGGCACGGGAAGCA tccccaagtgtttgagaggcagccgacctttggctttcccttctctccagGATGCAATGCATTGATGTTGAGCAGCAATTTGACTTCTTGAAAGCGCTAGTGCGCATCAGTACCTGACATGCAGGGGGACAGGGAAGACAACCATGTAGATGGGGAAAAGGGACCTCGAAGGTACAAAGCAAGGGGTCTGCGTCCTTCGTGTTTATCTTCTAGGGGCCGTA Alignment from GeneWise GAAGCAGTGCATTGAACTCGAGCAGCAGTTTGACTTCTTGAAAGACTTGGTG-GCATCAGTGCCTGACATGCAGGGGGATGGGGAGGACAACCACGTGGATGGGGACAAGGGTCCTCGAAGG------------------------------------------GGCCGGA tccccaagtgtttgagaggcagccgacctttggctttcccttctctccagGATGCAATGCATTGATGTTGAGCAGCAATTTGACTTCTTGAAAGCGCTAGTGCGCATCAGTACCTGACATGCAGGGGGACAGGGAAGACAACCATGTAGATGGGGAAAAGGGACCTCGAAGGTACAAAGCAAGGGGTCTGCGTCCTTCGTGTTTATCTTCTAGGGGCCGTA #### Drap1_ID987_3 --> 2 - 2 Original Alignment ccCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAA-ACCATGACCACGTCCCACct tctgaggtgtgggagtaatgcactccacgtgacactcctctcatcctcagccCGGGCACTTGAGCTTTTCTTGGAGTCCCTGCTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGCACAATGACCACATCTCACctgtaagtggcttttcccaacctggcaggggtgtttaaaactatggggtaag Alignment from CESAR ccCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAA-ACCATGACCACGTCCCACct tctgaggtgtgggagtaatgcactccacgtgacactcctctcatcctcagccCGGGCACTTGAGCTTTTCTTGGAGTCCCTGCTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGCACAATGACCACATCTCACctgtaagtggcttttcccaacctggcaggggtgtttaaaactatggggtaag Alignment from Spaln_aa2Genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAA-ACCATGACCACGTCCCACCT tctgaggtgtgggagtaatgcactccacgtgacactcctctcatcctcagCCCGGGCACTTGAGCTTTTCTTGGAGTCCCTGCTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGcACAATGACCACATCTCACCTgtaagtggcttttcccaacctggcaggggtgtttaaaactatggggtaag Alignment from Spaln_nt2Genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAA-ACCATGACCACGTCCCACCT tctgaggtgtgggagtaatgcactccacgtgacactcctctcatcctcagCCCGGGCACTTGAGCTTTTCTTGGAGTCCCTGCTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGCACAATGACCACATCTCACCTgtaagtggcttttcccaacctggcaggggtgtttaaaactatggggtaag Alignment from Pairagon CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAA-ACCATGACCACGTCCCACCT tctgaggtgtgggagtaatgcactccacgtgacactcctctcatcctcagCCCGGGCACTTGAGCTTTTCTTGGAGTCCCTGCTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGCACAATGACCACATCTCACCTgtaagtggcttttcccaacctggcaggggtgtttaaaactatggggtaag Alignment from Exonerate_protein2genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAA-ACCATGACCACGTCCCACCT tctgaggtgtgggagtaatgcactccacgtgacactcctctcatcctcagCCCGGGCACTTGAGCTTTTCTTGGAGTCCCTGCTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGCACAATGACCACATCTCACCTgtaagtggcttttcccaacctggcaggggtgtttaaaactatggggtaag Alignment from Exonerate_coding2genome CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAA-ACCATGACCACGTCCCACCT tctgaggtgtgggagtaatgcactccacgtgacactcctctcatcctcagCCCGGGCACTTGAGCTTTTCTTGGAGTCCCTGCTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGCACAATGACCACATCTCACCTgtaagtggcttttcccaacctggcaggggtgtttaaaactatggggtaag Alignment from GeneWise CCCGGGCCCTTGAGCTCTTCCTGGAGTCCCTGTTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCC-AAAACCATGACCACGTCCCACCT tctgaggtgtgggagtaatgcactccacgtgacactcctctcatcctcagCCCGGGCACTTGAGCTTTTCTTGGAGTCCCTGCTGAAGAAGGCTTGCCAGGTGACCCAGTCTCGAAATGCCAAGCACAATGACCACATCTCACCTgtaagtggcttttcccaacctggcaggggtgtttaaaactatggggtaag #### Eef1g_ID2562_4 --> 2 - 0 Original Alignment taAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTG-GTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagcttcaggttgttatgtactaaatgcttttatctctctttatttcagtgAGCAATGAGGAACTGCGAGGAAGTGCACCAGAAGCAGCAGCTCAGGTACGCACAGTGGGTTAGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtatgttttgttggtggtggtccaccaatagagtgagaattgtaagtgca Alignment from CESAR taAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTG-GTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagcttcaggttgttatgtactaaatgcttttatctctctttatttcagtgAGCAATGAGGAACTGCGAGGAAGTGCACCAGAAGCAGCAGCTCAGGTACGCACAGTGGGTTAGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtatgttttgttggtggtggtccaccaatagagtgagaattgtaagtgca Alignment from Spaln_aa2Genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTG-GTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagcttcaggttgttatgtactaaatgcttttatctctctttatttcagTGAGCAATGAGGAACTGCGAGGAAGTGCACCAGAAGCAGCAGCTCAGGTAcGCACAGTGGGTTAGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtatgttttgttggtggtggtccaccaatagagtgagaattgtaagtgca Alignment from Spaln_nt2Genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTG-GTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagcttcaggttgttatgtactaaatgcttttatctctctttatttcagTGAGCAATGAGGAACTGCGAGGAAGTGCACCAGAAGCAGCAGCTCAGGTACGCACAGTGGGTTAGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtatgttttgttggtggtggtccaccaatagagtgagaattgtaagtgca Alignment from Pairagon TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTG-GTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagcttcaggttgttatgtactaaatgcttttatctctctttatttcagTGAGCAATGAGGAACTGCGAGGAAGTGCACCAGAAGCAGCAGCTCAGGTACGCACAGTGGGTTAGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtatgttttgttggtggtggtccaccaatagagtgagaattgtaagtgca Alignment from Exonerate_protein2genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTG-GTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagcttcaggttgttatgtactaaatgcttttatctctctttatttcagTGAGCAATGAGGAACTGCGAGGAAGTGCACCAGAAGCAGCAGCTCAGGTACGCACAGTGGGTTAGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtatgttttgttggtggtggtccaccaatagagtgagaattgtaagtgca Alignment from Exonerate_coding2genome TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTG-GTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagcttcaggttgttatgtactaaatgcttttatctctctttatttcagTGAGCAATGAGGAACTGCGAGGAAGTGCACCAGAAGCAGCAGCTCAGGTACGCACAGTGGGTTAGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtatgttttgttggtggtggtccaccaatagagtgagaattgtaagtgca Alignment from GeneWise TAAGCAATGAGGAGCTGCGAGGAAGTACGCCAGAGGCGGCAGCTCAGGTG-GTGCAGTGGGTCAGCTTTGCTGACAGTGACATCGTTCCTCCAGCTAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAG caagcttcaggttgttatgtactaaatgcttttatctctctttatttcagTGAGCAATGAGGAACTGCGAGGAAGTGCACCAGAAGCAGCAGCTCAGGTACGCACAGTGGGTTAGCTTTACAGACAGTGACATCGTTCCACCAGCAAGTACCTGGGTGTTCCCCACCTTGGGCATTATGCACCACAACAAACAGgtatgttttgttggtggtggtccaccaatagagtgagaattgtaagtgca #### Eef1g_ID2567_9 --> 2 - 0 Original Alignment ggATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATT-TCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggataaacaaagccaggagggatgtctttggatacggtttacaggtATGTTCCAGCGGCTGGACAAACTGAGGAAGAATGCCTTTGCCAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCTATTCTCTGGAGTTTGGGTCTTTCGAGGCCAGGAGCTTGCCTATCCAgtagggctttggtaagagagacatcatgatgggggactagaagctttgag Alignment from CESAR ggATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATT-TCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggataaacaaagccaggagggatgtctttggatacggtttacaggtATGTTCCAGCGGCTGGACAAACTGAGGAAGAATGCCTTTGCCAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCTATTCTCTGGAGTTTGGGTCTTTCGAGGCCAGGAGCTTGCCTATCCAgtagggctttggtaagagagacatcatgatgggggactagaagctttgag Alignment from Spaln_aa2Genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATT-TCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggataaacaaagccaggagggatgtctttggatacggtttacagGTATGTTCCAGCGGCTGGACAAACTGAGGAAGAATGCCTTTGCCAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCTATTcTCTGGAGTTTGGGTCTTTCGAGGCCAGGAGCTTGCCTATCCAgtagggctttggtaagagagacatcatgatgggggactagaagctttgag Alignment from Spaln_nt2Genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATT-TCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggataaacaaagccaggagggatgtctttggatacggtttacagGTATGTTCCAGCGGCTGGACAAACTGAGGAAGAATGCCTTTGCCAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCTATTCTCTGGAGTTTGGGTCTTTCGAGGCCAGGAGCTTGCCTATCCAgtagggctttggtaagagagacatcatgatgggggactagaagctttgag Alignment from Pairagon GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATT-TCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggataaacaaagccaggagggatgtctttggatacggtttacagGTATGTTCCAGCGGCTGGACAAACTGAGGAAGAATGCCTTTGCCAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCTATTCTCTGGAGTTTGGGTCTTTCGAGGCCAGGAGCTTGCCTATCCAgtagggctttggtaagagagacatcatgatgggggactagaagctttgag Alignment from Exonerate_protein2genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATT-TCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggataaacaaagccaggagggatgtctttggatacggtttacagGTATGTTCCAGCGGCTGGACAAACTGAGGAAGAATGCCTTTGCCAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCTATTCTCTGGAGTTTGGGTCTTTCGAGGCCAGGAGCTTGCCTATCCAgtagggctttggtaagagagacatcatgatgggggactagaagctttgag Alignment from Exonerate_coding2genome GGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATT-TCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG gaagaaggataaacaaagccaggagggatgtctttggatacggtttacagGTATGTTCCAGCGGCTGGACAAACTGAGGAAGAATGCCTTTGCCAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCTATTCTCTGGAGTTTGGGTCTTTCGAGGCCAGGAGCTTGCCTATCCAgtagggctttggtaagagagacatcatgatgggggactagaagctttgag Alignment from GeneWise ----------------------------------------------ACTGGGATGTTTCAGCGATTGGACAAACTGAGGAAGAATGCCTTTGCTAGTGTTATCCTCTTTGGAACCAACAACAGCAGCTCCATT-TCTGGTGTTTGGGTCTTCCGAGGCCAAGAGCTTGCCTTTCCG GAAGAAGGATAAACAAAGCCAGGAGGGATGTCTTTGGATACGGTTTACAGGTATGTTCCAGCGGCTGGACAAACTGAGGAAGAATGCCTTTGCCAGTGTTATCCTCTTTGGAACTAATAACAGCAGCTCTATTCTCTGGAGTTTGGGTCTTTCGAGGCCAGGAGCTTGCCTATCCAgtagggctttggtaagagagacatcatgatgggggactagaagctttgag #### Efemp2_ID1029_2 --> 0 - 1 Original Alignment GAATGCACAGATGGCTATGAG-TGGGATGCAGACAGCCAGCACTGCCGGg actaaccaagatggcaataataatgatgcctaggtagtttttcattacagGAGTGTGCAGATGGCTGCGAACTGGGATGCAGATAGCCAACATTGCCAAggtgagtccttgtctgagtcctacctatgctctctgtaactagaagattca Alignment from CESAR GAATGCACAGATGGCTATGAG-TGGGATGCAGACAGCCAGCACTGCCGGg actaaccaagatggcaataataatgatgcctaggtagtttttcattacagGAGTGTGCAGATGGCTGCGAACTGGGATGCAGATAGCCAACATTGCCAAggtgagtccttgtctgagtcctacctatgctctctgtaactagaagattca Alignment from Spaln_aa2Genome GAATGCACAGATGGCTATGAG-TGGGATGCAGACAGCCAGCACTGCCGGG actaaccaagatggcaataataatgatgcctaggtagtttttcattacagGAGTGTGCAGATGGCTGCGAAcTGGGATGCAGATAGCCAACATTGCCAAGgtgagtccttgtctgagtcctacctatgctctctgtaactagaagattca Alignment from Spaln_nt2Genome GAATGCACAGATGGCTATGAG-TGGGATGCAGACAGCCAGCACTGCCGGG actaaccaagatggcaataataatgatgcctaggtagtttttcattacagGAGTGTGCAGATGGCTGCGAACTGGGATGCAGATAGCCAACATTGCCAAGgtgagtccttgtctgagtcctacctatgctctctgtaactagaagattca Alignment from Pairagon GAATGCACAGATGGCTATGAG-TGGGATGCAGACAGCCAGCACTGCCGGG actaaccaagatggcaataataatgatgcctaggtagtttttcattacagGAGTGTGCAGATGGCTGCGAACTGGGATGCAGATAGCCAACATTGCCAAGgtgagtccttgtctgagtcctacctatgctctctgtaactagaagattca Alignment from Exonerate_protein2genome GAATGCACAGATGGCTATGAG-TGGGATGCAGACAGCCAGCACTGCCGGG actaaccaagatggcaataataatgatgcctaggtagtttttcattacagGAGTGTGCAGATGGCTGCGAACTGGGATGCAGATAGCCAACATTGCCAAGgtgagtccttgtctgagtcctacctatgctctctgtaactagaagattca Alignment from Exonerate_coding2genome actaaccaagatggcaataataatgatgcctaggtagtttttcattacaggagtgtgcagatggctgcgaactgggatgcagatagccaacattgccaaggtgagtccttgtctgagtcctacctatgctctctgtaactagaagattca Alignment from GeneWise GAATGCACAGATGGC-TATGAGTGGGATGCAGACAGCCAGCACTGCCGGG actaaccaagatggcaataataatgatgcctaggtagtttttcattacagGAGTGTGCAGATGGCTGCGAACTGGGATGCAGATAGCCAACATTGCCAAGgtgagtccttgtctgagtcctacctatgctctctgtaactagaagattca #### Efemp2_ID1033_6 --> 2 - 1 Original Alignment atGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGC-TGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCg ggtggtggctgtccatgactttcatctttttactttttatttttcaatagatGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGTTGTTTCAATTCATACGGGACCTTTCTGTGTCGGCTGCAACCAGGGCTATGAGCTGCACTGGGATGGCTTCTCCTGCAGTggtaagtgtcaactgtgacatcccctttatgccatgtagcagggtttatgc Alignment from CESAR atGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGC-TGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCg ggtggtggctgtccatgactttcatctttttactttttatttttcaatagatGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGTTGTTTCAATTCATACGGGACCTTTCTGTGTCGGCTGCAACCAGGGCTATGAGCTGCACTGGGATGGCTTCTCCTGCAGTggtaagtgtcaactgtgacatcccctttatgccatgtagcagggtttatgc Alignment from Spaln_aa2Genome ATGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGC-TGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG ggtggtggctgtccatgactttcatctttttactttttatttttcaatagATGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGTTGTTTCAATTCATACGGGACCTTTCTGTGTCGGcTGCAACCAGGGCTATGAGCTGCACTGGGATGGCTTCTCCTGCAGTGgtaagtgtcaactgtgacatcccctttatgccatgtagcagggtttatgc Alignment from Spaln_nt2Genome ATGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTC-GCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG ggtggtggctgtccatgactttcatctttttactttttatttttcaatagATGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGTTGTTTCAATTCATACGGGACCTTTCTGTGTCGGCTGCAACCAGGGCTATGAGCTGCACTGGGATGGCTTCTCCTGCAGTGgtaagtgtcaactgtgacatcccctttatgccatgtagcagggtttatgc Alignment from Pairagon ATGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCG-CTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG ggtggtggctgtccatgactttcatctttttactttttatttttcaatagATGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGTTGTTTCAATTCATACGGGACCTTTCTGTGTCGGCTGCAACCAGGGCTATGAGCTGCACTGGGATGGCTTCTCCTGCAGTGgtaagtgtcaactgtgacatcccctttatgccatgtagcagggtttatgc Alignment from Exonerate_protein2genome ATGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGC-TGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG ggtggtggctgtccatgactttcatctttttactttttatttttcaatagATGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGTTGTTTCAATTCATACGGGACCTTTCTGTGTCGGCTGCAACCAGGGCTATGAGCTGCACTGGGATGGCTTCTCCTGCAGTGgtaagtgtcaactgtgacatcccctttatgccatgtagcagggtttatgc Alignment from Exonerate_coding2genome ATGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGTCGC-TGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG ggtggtggctgtccatgactttcatctttttactttttatttttcaatagATGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGTTGTTTCAATTCATACGGGACCTTTCTGTGTCGGCTGCAACCAGGGCTATGAGCTGCACTGGGATGGCTTCTCCTGCAGTGgtaagtgtcaactgtgacatcccctttatgccatgtagcagggtttatgc Alignment from GeneWise ATGTGAATGAGTGTGACATGGGAGCCCCATGTGAGCAGCGCTGCTTCAACTCCTATGGGACCTTCCTGTGT-CGCTGTAACCAGGGCTATGAGCTGCACCGGGATGGCTTCTCCTGCAGCG ggtggtggctgtccatgactttcatctttttactttttatttttcaatagATGTGAATGAGTGTGACATGGGAGCCCCTTGTGAGCAGCGTTGTTTCAATTCATACGGGACCTTTCTGTGTCGGCTGCAACCAGGGCTATGAGCTGCACTGGGATGGCTTCTCCTGCAGTGgtaagtgtcaactgtgacatcccctttatgccatgtagcagggtttatgc #### Ehbp1l1_ID1220_15 --> 0 - 1 Original Alignment CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGAT-GGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAg ctggctcgggtggggtcacttgtcctctccctgctgttaccatcttgtagCATCGGTTACAGGACACAAGCCAGTATGTGTGTGCAGAGCAACAAGCCCTAGAGCAAGAACAGGGACAGGTCGATCGGCAGGGCTCCTGAAGTGCAGAAGCAATTTAGGAGCCTGATGGAATCAggtaagaccccatacttttgactttgcttctttagaattcaccaccttgtg Alignment from CESAR CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGAT-GGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAg ctggctcgggtggggtcacttgtcctctccctgctgttaccatcttgtagCATCGGTTACAGGACACAAGCCAGTATGTGTGTGCAGAGCAACAAGCCCTAGAGCAAGAACAGGGACAGGTCGATCGGCAGGGCTCCTGAAGTGCAGAAGCAATTTAGGAGCCTGATGGAATCAggtaagaccccatacttttgactttgcttctttagaattcaccaccttgtg Alignment from Spaln_aa2Genome CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGAT-GGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG ctggctcgggtggggtcacttgtcctctccctgctgttaccatcttgtagCATCGGTTACAGGACACAAGCCAGTATGTGTGTGCAGAGCAACAAGCCCTAGAGCAAGAACAGGGACAGGTCGATcGGCAGGGCTCCTGAAGTGCAGAAGCAATTTAGGAGCCTGATGGAATCAGgtaagaccccatacttttgactttgcttctttagaattcaccaccttgtg Alignment from Spaln_nt2Genome CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGATGGG-AGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG ctggctcgggtggggtcacttgtcctctccctgctgttaccatcttgtagCATCGGTTACAGGACACAAGCCAGTATGTGTGTGCAGAGCAACAAGCCCTAGAGCAAGAACAGGGACAGGTCGATCGGCAGGGCTCCTGAAGTGCAGAAGCAATTTAGGAGCCTGATGGAATCAGgtaagaccccatacttttgactttgcttctttagaattcaccaccttgtg Alignment from Pairagon CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGAT-GGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG ctggctcgggtggggtcacttgtcctctccctgctgttaccatcttgtagCATCGGTTACAGGACACAAGCCAGTATGTGTGTGCAGAGCAACAAGCCCTAGAGCAAGAACAGGGACAGGTCGATCGGCAGGGCTCCTGAAGTGCAGAAGCAATTTAGGAGCCTGATGGAATCAGgtaagaccccatacttttgactttgcttctttagaattcaccaccttgtg Alignment from Exonerate_protein2genome CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGAT-GGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG ctggctcgggtggggtcacttgtcctctccctgctgttaccatcttgtagCATCGGTTACAGGACACAAGCCAGTATGTGTGTGCAGAGCAACAAGCCCTAGAGCAAGAACAGGGACAGGTCGATCGGCAGGGCTCCTGAAGTGCAGAAGCAATTTAGGAGCCTGATGGAATCAGgtaagaccccatacttttgactttgcttctttagaattcaccaccttgtg Alignment from Exonerate_coding2genome CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGAT-GGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG ctggctcgggtggggtcacttgtcctctccctgctgttaccatcttgtagCATCGGTTACAGGACACAAGCCAGTATGTGTGTGCAGAGCAACAAGCCCTAGAGCAAGAACAGGGACAGGTCGATCGGCAGGGCTCCTGAAGTGCAGAAGCAATTTAGGAGCCTGATGGAATCAGgtaagaccccatacttttgactttgcttctttagaattcaccaccttgtg Alignment from GeneWise CAACGGTTCCAGGACACAAGTCAGTACGTGTGCGCAGAGCTGCAAGCCCTGGAGCAGGAACAGGGACAGATAGAT-GGGAGGGCCGCTGAGGTGGAGAAGCAGCTGAGGAGCCTCATGGAATCAG ctggctcgggtggggtcacttgtcctctccctgctgttaccatcttgtagCATCGGTTACAGGACACAAGCCAGTATGTGTGTGCAGAGCAACAAGCCCTAGAGCAAGAACAGGGACAGGTCGATCGGCAGGGCTCCTGAAGTGCAGAAGCAATTTAGGAGCCTGATGGAATCAGgtaagaccccatacttttgactttgcttctttagaattcaccaccttgtg #### Ehbp1l1_ID1229_6 --> 1 - 1 Original Alignment gGATGATGACATGCAGAGTCTG-GCCAGCCTCATGAGTGTGAAGCCTAGTGACGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTCCGGACTCGAGGCCCCCAGTCAg tagaggtgatgacgtgcaaagtctggcctttataatttcctctttattagaGATGATGACATGCAAAGTCTGCGCCAGCCTCATGAGTGTGAAGCCTAGCGATGTGGGAAACCTGGACGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTTCAGACCAGAGGCCCCCAGTCTggtactcttacagttgtccagattgccagtacctaaggtggatactattcc Alignment from CESAR gGATGATGACATGCAGAGTCTG-GCCAGCCTCATGAGTGTGAAGCCTAGTGACGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTCCGGACTCGAGGCCCCCAGTCAg tagaggtgatgacgtgcaaagtctggcctttataatttcctctttattagaGATGATGACATGCAAAGTCTGCGCCAGCCTCATGAGTGTGAAGCCTAGCGATGTGGGAAACCTGGACGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTTCAGACCAGAGGCCCCCAGTCTggtactcttacagttgtccagattgccagtacctaaggtggatactattcc Alignment from Spaln_aa2Genome GGATGATGACATGCAGAGTCTG-GCCAGCCTCATGAGTGTGAAGCCTAGTGACGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTCCGGACTCGAGGCCCCCAGTCAG tagaggtgatgacgtgcaaagtctggcctttataatttcctctttattagAGATGATGACATGCAAAGTCTGcGCCAGCCTCATGAGTGTGAAGCCTAGCGATGTGGGAAACCTGGACGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTTCAGACCAGAGGCCCCCAGTCTGgtactcttacagttgtccagattgccagtacctaaggtggatactattcc Alignment from Spaln_nt2Genome GGATGATGACATGCAGA GTCTGGCCAGCCTCATG-AGTGTGAAGCCTAGTGACGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTCCGGACTCGAGGCCCCCAGTCAG tagAGGTGATGACGTGCAAAgtctggcctttataatttcctctttattagagatgatgacatgcaaagTCTG-CGCCAGCCTCATGAGTGTGAAGCCTAGCGATGTGGGAAACCTGGACGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTTCAGACCAGAGGCCCCCAGTCTGgtactcttacagttgtccagattgccagtacctaaggtggatactattcc Alignment from Pairagon GGATGATGACATGCAGAGTCTG-GCCAGCCTCATGAGTGTGAAGCCTAGTGACGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTCCGGACTCGAGGCCCCCAGTCAG tagaggtgatgacgtgcaaagtctggcctttataatttcctctttattagAGATGATGACATGCAAAGTCTGCGCCAGCCTCATGAGTGTGAAGCCTAGCGATGTGGGAAACCTGGACGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTTCAGACCAGAGGCCCCCAGTCTGgtactcttacagttgtccagattgccagtacctaaggtggatactattcc Alignment from Exonerate_protein2genome tagaggtgatgacgtgcaaagtctggcctttataatttcctctttattagagatgatgacatgcaaagtctgcgccagcctcatgagtgtgaagcctagcgatgtgggaaacctggacgactttgctgagagtgatgaggaggaagctaatggccctggggctcctgaggttcagaccagaggcccccagtctggtactcttacagttgtccagattgccagtacctaaggtggatactattcc Alignment from Exonerate_coding2genome tagaggtgatgacgtgcaaagtctggcctttataatttcctctttattagagatgatgacatgcaaagtctgcgccagcctcatgagtgtgaagcctagcgatgtgggaaacctggacgactttgctgagagtgatgaggaggaagctaatggccctggggctcctgaggttcagaccagaggcccccagtctggtactcttacagttgtccagattgccagtacctaaggtggatactattcc Alignment from GeneWise GGATGATGACATGCAGAGTCTG-GCCAGCCTCATGAGTGTGAAGCCTAGTGACGTGGGAAACCTGGATGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTCCGGACTCGAGGCCCCCAGTCAG tagaggtgatgacgtgcaaagtctggcctttataatttcctctttattagAGATGATGACATGCAAAGTCTGCGCCAGCCTCATGAGTGTGAAGCCTAGCGATGTGGGAAACCTGGACGACTTTGCTGAGAGTGATGAGGAGGAAGCTAATGGCCCTGGGGCTCCTGAGGTTCAGACCAGAGGCCCCCAGTCTGgtactcttacagttgtccagattgccagtacctaaggtggatactattcc #### Eif3a_ID13316_14 --> 0 - 0 Original Alignment ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAG-AGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAA---------------GAAGAAGAAAGA gctctgtcctgccataggtctgtgtgtgttctacctttttatctctgcagATTGACTATTTTGAGAGGGTGAAGCGCTTGGAGGAAATTCCTCTAATAAAGCAGTGCATACGAAGAACAAAGAGTTAAAGACATGGACCTGTGGGAACAGCAAAAAGATGAAAGGGTAAAAGATGAAAGGgtgagattttgaaatataaccaaactaaagaaagaaagagttttcaatag Alignment from CESAR ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAG-AGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA gctctgtcctgccataggtctgtgtgtgttctacctttttatctctgcagATTGACTATTTTGAGAGGGTGAAGCGCTTGGAGGAAATTCCTCTAATAAAGCAGTGCATACGAAGAACAAAGAGTTAAAGACATGGACCTGTGGGAACAGCAAAAAGATGAAAGGgtaaaagatgaaagggtgagattttgaaatataaccaaactaaagaaagaaagagttttcaatag Alignment from Spaln_aa2Genome ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAG-AGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA gctctgtcctgccataggtctgtgtgtgttctacctttttatctctgcagATTGACTATTTTGAGAGGGTGAAGCGCTTGGAGGAAATTCCTCTAATAAAGcAGTGCATACGAAGAACAAAGAGTTAAAGACATGGACCTGTGGGAACAGCAAAAAGATGAAAGGgtaaaagatgaaagggtgagattttgaaatataaccaaactaaagaaagaaagagttttcaatag Alignment from Spaln_nt2Genome ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAG-AGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA gctctgtcctgccataggtctgtgtgtgttctacctttttatctctgcagATTGACTATTTTGAGAGGGTGAAGCGCTTGGAGGAAATTCCTCTAATAAAGCAGTGCATACGAAGAACAAAGAGTTAAAGACATGGACCTGTGGGAACAGCAAAAAGATGAAAGGgtaaaagatgaaagggtgagattttgaaatataaccaaactaaagaaagaaagagttttcaatag Alignment from Pairagon ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAG-AGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA gctctgtcctgccataggtctgtgtgtgttctacctttttatctctgcagATTGACTATTTTGAGAGGGTGAAGCGCTTGGAGGAAATTCCTCTAATAAAGCAGTGCATACGAAGAACAAAGAGTTAAAGACATGGACCTGTGGGAACAGCAAAAAGATGAAAGGgtaaaagatgaaagggtgagattttgaaatataaccaaactaaagaaagaaagagttttcaatag Alignment from Exonerate_protein2genome ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAG-AGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA gctctgtcctgccataggtctgtgtgtgttctacctttttatctctgcagATTGACTATTTTGAGAGGGTGAAGCGCTTGGAGGAAATTCCTCTAATAAAGCAGTGCATACGAAGAACAAAGAGTTAAAGACATGGACCTGTGGGAACAGCAAAAAGATGAAAGGgtaaaagatgaaagggtgagattttgaaatataaccaaactaaagaaagaaagagttttcaatag Alignment from Exonerate_coding2genome ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAG-AGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA gctctgtcctgccataggtctgtgtgtgttctacctttttatctctgcagATTGACTATTTTGAGAGGGTGAAGCGCTTGGAGGAAATTCCTCTAATAAAGCAGTGCATACGAAGAACAAAGAGTTAAAGACATGGACCTGTGGGAACAGCAAAAAGATGAAAGGgtaaaagatgaaagggtgagattttgaaatataaccaaactaaagaaagaaagagttttcaatag Alignment from GeneWise ATTGACTATTTTGAGAGAGCTAAGCGTTTGGAAGAAATTCCTTTAATAAAG-AGTGCTTATGAGGAACAAAGGGTTAAAGACATGGACCTGTGGGAACAGCAAGAAGAAGAAAGA gctctgtcctgccataggtctgtgtgtgttctacctttttatctctgcagATTGACTATTTTGAGAGGGTGAAGCGCTTGGAGGAAATTCCTCTAATAAAGCAGTGCATACGAAGAACAAAGAGTTAAAGACATGGACCTGTGGGAACAGCAAAAAGATGAAAGGgtaaaagatgaaagggtgagattttgaaatataaccaaactaaagaaagaaagagttttcaatag #### Eif3a_ID13317_13 --> 0 - 0 Original Alignment GACCTTGAAGAACTGGATCCAGAT-TTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtagtgctttaaggtaggtataagcttgtctctatctctttttcagGACTTTGAAGAACTGGATCAAGACCTTTATTATGGCCAAACAGGTAGAGCAGCTGGAAAAGGAAAAGAAGGAACTTCAGGAACGCCTCAAAACACAAGAAGAGAAGgtaagtgtggatcactgataggatctgaaagtaaattgcatcaaaagtgt Alignment from CESAR GACCTTGAAGAACTGGATCCAGAT-TTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtagtgctttaaggtaggtataagcttgtctctatctctttttcagGACTTTGAAGAACTGGATCAAGACCTTTATTATGGCCAAACAGGTAGAGCAGCTGGAAAAGGAAAAGAAGGAACTTCAGGAACGCCTCAAAACACAAGAAGAGAAGgtaagtgtggatcactgataggatctgaaagtaaattgcatcaaaagtgt Alignment from Spaln_aa2Genome GACCTTGAAGAACTGGATCCAGAT-TTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtagtgctttaaggtaggtataagcttgtctctatctctttttcagGACTTTGAAGAACTGGATCAAGACcTTTATTATGGCCAAACAGGTAGAGCAGCTGGAAAAGGAAAAGAAGGAACTTCAGGAACGCCTCAAAACACAAGAAGAGAAGgtaagtgtggatcactgataggatctgaaagtaaattgcatcaaaagtgt Alignment from Spaln_nt2Genome GACCTTGAAGAACTGGATCCAGAT-TTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtagtgctttaaggtaggtataagcttgtctctatctctttttcagGACTTTGAAGAACTGGATCAAGACCTTTATTATGGCCAAACAGGTAGAGCAGCTGGAAAAGGAAAAGAAGGAACTTCAGGAACGCCTCAAAACACAAGAAGAGAAGgtaagtgtggatcactgataggatctgaaagtaaattgcatcaaaagtgt Alignment from Pairagon GACCTTGAAGAACTGGATCCAGA-TTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtagtgctttaaggtaggtataagcttgtctctatctctttttcagGACTTTGAAGAACTGGATCAAGACCTTTATTATGGCCAAACAGGTAGAGCAGCTGGAAAAGGAAAAGAAGGAACTTCAGGAACGCCTCAAAACACAAGAAGAGAAGgtaagtgtggatcactgataggatctgaaagtaaattgcatcaaaagtgt Alignment from Exonerate_protein2genome GACCTTGAAGAACTGGATCCAGAT-TTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtagtgctttaaggtaggtataagcttgtctctatctctttttcagGACTTTGAAGAACTGGATCAAGACCTTTATTATGGCCAAACAGGTAGAGCAGCTGGAAAAGGAAAAGAAGGAACTTCAGGAACGCCTCAAAACACAAGAAGAGAAGgtaagtgtggatcactgataggatctgaaagtaaattgcatcaaaagtgt Alignment from Exonerate_coding2genome GACCTTGAAGAACTGGATCCAGAT-TTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtagtgctttaaggtaggtataagcttgtctctatctctttttcagGACTTTGAAGAACTGGATCAAGACCTTTATTATGGCCAAACAGGTAGAGCAGCTGGAAAAGGAAAAGAAGGAACTTCAGGAACGCCTCAAAACACAAGAAGAGAAGgtaagtgtggatcactgataggatctgaaagtaaattgcatcaaaagtgt Alignment from GeneWise GACCTTGAAGAACTGGAT-CCAGATTTTATTATGGCCAAACAGGTTGAACAACTGGAGAAAGAAAAGAAGGAACTTCAGGAACGCCTGAAGAATCAAGAAAAGAAG agttgtagtgctttaaggtaggtataagcttgtctctatctctttttcagGACTTTGAAGAACTGGATCAAGACCTTTATTATGGCCAAACAGGTAGAGCAGCTGGAAAAGGAAAAGAAGGAACTTCAGGAACGCCTCAAAACACAAGAAGAGAAGgtaagtgtggatcactgataggatctgaaagtaaattgcatcaaaagtgt #### Eml3_ID2507_6 --> 2 - 2 Original Alignment aaGGCATTTCAGTGAAG-ATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGgt gtgctgagtggcctccaaagaggaggctctcccaccaattgtgtctccagaaGGGATCTCAGTGAAGCATGTTCCTTTGTGGCCGTCCCATTACAATGTACATTCCATCTGGCGTCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCGGAGACCCTGACCCTTGATTGGgtgtaagtggttaaaactgtcacacacaatagatagcctggcacttttgcag Alignment from CESAR aaGGCATTTCAGTGAAG-ATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGgt gtgctgagtggcctccaaagaggaggctctcccaccaattgtgtctccagaaGGGATCTCAGTGAAGCATGTTCCTTTGTGGCCGTCCCATTACAATGTACATTCCATCTGGCGTCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCGGAGACCCTGACCCTTGATTGGgtgtaagtggttaaaactgtcacacacaatagatagcctggcacttttgcag Alignment from Spaln_aa2Genome AAGGCATTTCAGTGAAG-ATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT gtgctgagtggcctccaaagaggaggctctcccaccaattgtgtctccagAAGGGATCTCAGTGAAGcATGTTCCTTTGTGGCCGTCCCATTACAATGTACATTCCATCTGGCGTCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCGGAGACCCTGACCCTTGATTGGGTgtaagtggttaaaactgtcacacacaatagatagcctggcacttttgcag Alignment from Spaln_nt2Genome AAGGCATTTCAGTGAAG-ATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT gtgctgagtggcctccaaagaggaggctctcccaccaattgtgtctccagAAGGGATCTCAGTGAAGCATGTTCCTTTGTGGCCGTCCCATTACAATGTACATTCCATCTGGCGTCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCGGAGACCCTGACCCTTGATTGGGTgtaagtggttaaaactgtcacacacaatagatagcctggcacttttgcag Alignment from Pairagon AAGGCATTTCAGTGAAG-ATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT gtgctgagtggcctccaaagaggaggctctcccaccaattgtgtctccagAAGGGATCTCAGTGAAGCATGTTCCTTTGTGGCCGTCCCATTACAATGTACATTCCATCTGGCGTCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCGGAGACCCTGACCCTTGATTGGGTgtaagtggttaaaactgtcacacacaatagatagcctggcacttttgcag Alignment from Exonerate_protein2genome AAGGCATTTCAGTGAAG-ATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT gtgctgagtggcctccaaagaggaggctctcccaccaattgtgtctccagAAGGGATCTCAGTGAAGCATGTTCCTTTGTGGCCGTCCCATTACAATGTACATTCCATCTGGCGTCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCGGAGACCCTGACCCTTGATTGGGTgtaagtggttaaaactgtcacacacaatagatagcctggcacttttgcag Alignment from Exonerate_coding2genome AAGGCATTTCAGTGAAG-ATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT gtgctgagtggcctccaaagaggaggctctcccaccaattgtgtctccagAAGGGATCTCAGTGAAGCATGTTCCTTTGTGGCCGTCCCATTACAATGTACATTCCATCTGGCGTCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCGGAGACCCTGACCCTTGATTGGGTgtaagtggttaaaactgtcacacacaatagatagcctggcacttttgcag Alignment from GeneWise -ATGTTCCTTCGTGGCCGTCCCATCACCATGTACATTCCGTCTGGCATCCGAAGTCTTGAGGAGCTGCCCAGCGGCCCGCCCCCAGAGACCCTGAGCCTCGACTGGGT gtgctgagtggcctccaaagaggaggctctcccaccaattgtgtctccagaagggatctcagtgaagCATGTTCCTTTGTGGCCGTCCCATTACAATGTACATTCCATCTGGCGTCCGGAGCCTTGAGGAGCTGCCTAGTGGCCCACCACCGGAGACCCTGACCCTTGATTGGGTgtaagtggttaaaactgtcacacacaatagatagcctggcacttttgcag #### Eml3_ID2508_7 --> 1 - 2 Original Alignment tTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGC-TCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGAtg tcccttcttctaattcctttccctggcccgtaaacatgttcttttggtagtTATGGTTATAGAGGTCAGGATTCTCGCTCAAATCTATTTGTGCTACGCCTCTGGGGAGGTCGTCTATCTTATTGCCTGTGTAGTGGTACTGTACCGGCCGGGAGGAGGCCCAGGTGGACCAGGAGGTGGTGGTCAGAGACATTATCGGGGTCACACAGACTGTGTTCGAtggtaagcattgtggtggggctttagcatagagggggtaggtgtttggcagg Alignment from CESAR tTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGC-TCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGAtg tcccttcttctaattcctttccctggcccgtaaacatgttcttttggtagtTATGGTTATAGAGGTCAGGATTCTCGCTCAAATCTATTTGTGCTACGCCTCTGGGGAGGTCGTCTATCTTATTGCCTGTGTAGTGGTACTGTACCGGCCGGGAGGAGGCCCAGGTGGACCAGGAGGTGGTGGTCAGAGACATTATCGGGGTCACACAGACTGTGTTCGAtggtaagcattgtggtggggctttagcatagagggggtaggtgtttggcagg Alignment from Spaln_aa2Genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGC-TCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcttctaattcctttccctggcccgtaaacatgttcttttggtagTTATGGTTATAGAGGTCAGGATTCTCGCTCAAATCTATTTGTGCTACGCcTCTGGGGAGGTCGTCTATCTTATTGCCTGTGTAGTGGTACTGTACCGGCCGGGAGGAGGCCCAGGTGGACCAGGAGGTGGTGGTCAGAGACATTATCGGGGTCACACAGACTGTGTTCGATGgtaagcattgtggtggggctttagcatagagggggtaggtgtttggcagg Alignment from Spaln_nt2Genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGC-TCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcttctaattcctttccctggcccgtaaacatgttcttttggtagTTATGGTTATAGAGGTCAGGATTCTCGCTCAAATCTATTTGTGCTACGCCTCTGGGGAGGTCGTCTATCTTATTGCCTGTGTAGTGGTACTGTACCGGCCGGGAGGAGGCCCAGGTGGACCAGGAGGTGGTGGTCAGAGACATTATCGGGGTCACACAGACTGTGTTCGATGgtaagcattgtggtggggctttagcatagagggggtaggtgtttggcagg Alignment from Pairagon TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCG-CTCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcttctaattcctttccctggcccgtaaacatgttcttttggtagTTATGGTTATAGAGGTCAGGATTCTCGCTCAAATCTATTTGTGCTACGCCTCTGGGGAGGTCGTCTATCTTATTGCCTGTGTAGTGGTACTGTACCGGCCGGGAGGAGGCCCAGGTGGACCAGGAGGTGGTGGTCAGAGACATTATCGGGGTCACACAGACTGTGTTCGATGgtaagcattgtggtggggctttagcatagagggggtaggtgtttggcagg Alignment from Exonerate_protein2genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGC-TCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcttctaattcctttccctggcccgtaaacatgttcttttggtagTTATGGTTATAGAGGTCAGGATTCTCGCTCAAATCTATTTGTGCTACGCCTCTGGGGAGGTCGTCTATCTTATTGCCTGTGTAGTGGTACTGTACCGGCCGGGAGGAGGCCCAGGTGGACCAGGAGGTGGTGGTCAGAGACATTATCGGGGTCACACAGACTGTGTTCGATGgtaagcattgtggtggggctttagcatagagggggtaggtgtttggcagg Alignment from Exonerate_coding2genome TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGC-TCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcttctaattcctttccctggcccgtaaacatgttcttttggtagTTATGGTTATAGAGGTCAGGATTCTCGCTCAAATCTATTTGTGCTACGCCTCTGGGGAGGTCGTCTATCTTATTGCCTGTGTAGTGGTACTGTACCGGCCGGGAGGAGGCCCAGGTGGACCAGGAGGTGGTGGTCAGAGACATTATCGGGGTCACACAGACTGTGTTCGATGgtaagcattgtggtggggctttagcatagagggggtaggtgtttggcagg Alignment from GeneWise TTATGGGTACAGGGGTCGTGATTCTCGCTCTAATCTATTTGTGCTGCGC-TCTGGGGAGGTGGTCTACTTTATTGCCTGTGTAGTGGTGCTGTACCGGCCTGGGGGAGGCCCAGGGGGTCCTGGAGGTGGCGGCCAGAGACATTACCGGGGTCACACAGACTGCGTTCGATG tcccttcttctaattcctttccctggcccgtaaacatgttcttttggtagTTATGGTTATAGAGGTCAGGATTCTCGCTCAAATCTATTTGTGCTACGCCTCTGGGGAGGTCGTCTATCTTATTGCCTGTGTAGTGGTACTGTACCGGCCGGGAGGAGGCCCAGGTGGACCAGGAGGTGGTGGTCAGAGACATTATCGGGGTCACACAGACTGTGTTCGATGgtaagcattgtggtggggctttagcatagagggggtaggtgtttggcagg #### Eml3_ID2509_8 --> 1 - 0 Original Alignment cCTTGCTGTTCACCCTGATGGTGTTCGTGTA-GCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG atgtggagttttaatgtaggatttcatgactgtgggtgtttctgtgacagtCTTGCTGTCCATCCTGATGGAGTTCATGTTCGCTTCAGGGCAGACAGCTGGAGTGGACAAGGATGGGAAGgtaagtgccagtgagcagatggcaatgagattatgggtcaaatttacttc Alignment from CESAR cCTTGCTGTTCACCCTGATGGTGTTCGTGTA-GCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG atgtggagttttaatgtaggatttcatgactgtgggtgtttctgtgacagtCTTGCTGTCCATCCTGATGGAGTTCATGTTCGCTTCAGGGCAGACAGCTGGAGTGGACAAGGATGGGAAGgtaagtgccagtgagcagatggcaatgagattatgggtcaaatttacttc Alignment from Spaln_aa2Genome CCTTGCTGTTCACCCTGATGGTGTTCGTGTA-GCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG atgtggagttttaatgtaggatttcatgactgtgggtgtttctgtgacagTCTTGCTGTCCATCCTGATGGAGTTCATGTTcGCTTCAGGGCAGACAGCTGGAGTGGACAAGGATGGGAAGgtaagtgccagtgagcagatggcaatgagattatgggtcaaatttacttc Alignment from Spaln_nt2Genome CCTTGCTGTTCACCCTGATGGTGTTCGTGTA-GCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG atgtggagttttaatgtaggatttcatgactgtgggtgtttctgtgacagTCTTGCTGTCCATCCTGATGGAGTTCATGTTCGCTTCAGGGCAGACAGCTGGAGTGGACAAGGATGGGAAGgtaagtgccagtgagcagatggcaatgagattatgggtcaaatttacttc Alignment from Pairagon CCTTGCTGTTCACCCTGATGGTGTTCGTG-TAGCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG atgtggagttttaatgtaggatttcatgactgtgggtgtttctgtgacagTCTTGCTGTCCATCCTGATGGAGTTCATGTTCGCTTCAGGGCAGACAGCTGGAGTGGACAAGGATGGGAAGgtaagtgccagtgagcagatggcaatgagattatgggtcaaatttacttc Alignment from Exonerate_protein2genome CCTTGCTGTTCACCCTGATGGTGTTCGTGTA-GCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG atgtggagttttaatgtaggatttcatgactgtgggtgtttctgtgacagTCTTGCTGTCCATCCTGATGGAGTTCATGTTCGCTTCAGGGCAGACAGCTGGAGTGGACAAGGATGGGAAGgtaagtgccagtgagcagatggcaatgagattatgggtcaaatttacttc Alignment from Exonerate_coding2genome CCTTGCTGTTCACCCTGATGGTGTTCGTGTA-GCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG atgtggagttttaatgtaggatttcatgactgtgggtgtttctgtgacagTCTTGCTGTCCATCCTGATGGAGTTCATGTTCGCTTCAGGGCAGACAGCTGGAGTGGACAAGGATGGGAAGgtaagtgccagtgagcagatggcaatgagattatgggtcaaatttacttc Alignment from GeneWise CCTTGCTGTTCACCCTGATGGTGTTCGTGTA-GCCTCAGGACAGACAGCTGGAGTGGACAAGGATGGAAAG-------------------------------------------------- atgtggagttttaatgtaggatttcatgactgtgggtgtttctgtgacagTCTTGCTGTCCATCCTGATGGAGTTCATGTTCGCTTCAGGGCAGACAGCTGGAGTGGACAAGGATGGGAAGGTAAGTGCCAGTGAGCAGATGGCAATGAGATTATGGGTCAAATTTACTTC #### Eml3_ID2512_11 --> 0 - 0 Original Alignment AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGG-AGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG gcctgcacttgcctcagtgtgagccataacagcatttctgtcttttacagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCGGAAAATCGCATGTCCACTTTTGGAACTGGCAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCACGGAAGCAGGGTGTTCTTGGGgtaggttgggtgaggtcattgagggcgctgcatactcatcacaacacacc Alignment from CESAR AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGG-AGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG gcctgcacttgcctcagtgtgagccataacagcatttctgtcttttacagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCGGAAAATCGCATGTCCACTTTTGGAACTGGCAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCACGGAAGCAGGGTGTTCTTGGGgtaggttgggtgaggtcattgagggcgctgcatactcatcacaacacacc Alignment from Spaln_aa2Genome AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGG-AGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG gcctgcacttgcctcagtgtgagccataacagcatttctgtcttttacagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCGGAAAATCGCATGTCCACTTTTGGAACTGGcAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCACGGAAGCAGGGTGTTCTTGGGgtaggttgggtgaggtcattgagggcgctgcatactcatcacaacacacc Alignment from Spaln_nt2Genome AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGG-AGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG gcctgcacttgcctcagtgtgagccataacagcatttctgtcttttacagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCGGAAAATCGCATGTCCACTTTTGGAACTGGCAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCACGGAAGCAGGGTGTTCTTGGGgtaggttgggtgaggtcattgagggcgctgcatactcatcacaacacacc Alignment from Pairagon AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGG-AGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG gcctgcacttgcctcagtgtgagccataacagcatttctgtcttttacagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCGGAAAATCGCATGTCCACTTTTGGAACTGGCAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCACGGAAGCAGGGTGTTCTTGGGgtaggttgggtgaggtcattgagggcgctgcatactcatcacaacacacc Alignment from Exonerate_protein2genome AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGG-AGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG gcctgcacttgcctcagtgtgagccataacagcatttctgtcttttacagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCGGAAAATCGCATGTCCACTTTTGGAACTGGCAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCACGGAAGCAGGGTGTTCTTGGGgtaggttgggtgaggtcattgagggcgctgcatactcatcacaacacacc Alignment from Exonerate_coding2genome AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGG-AGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG gcctgcacttgcctcagtgtgagccataacagcatttctgtcttttacagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCGGAAAATCGCATGTCCACTTTTGGAACTGGCAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCACGGAAGCAGGGTGTTCTTGGGgtaggttgggtgaggtcattgagggcgctgcatactcatcacaacacacc Alignment from GeneWise AGTACAAATGACTCAGTCCTCGCTGTTGGCTTCAGCCCTCGTGACAGCAGCTGTATTGTCACCAGTGGGAAATCGCATGTCCACTTTTGGAACTGG-AGCGGTGGGACAGGGGCTCCCGGGAATGGGCTCCTCGCCCGGAAGCAGGGTGTTTTTGGG gcctgcacttgcctcagtgtgagccataacagcatttctgtcttttacagAGTACAAATGACTCCGTACTTGCTGTTGGCTTCAGCCCTCGTGACAGCAGTTGTATTGTCACTAGCGGAAAATCGCATGTCCACTTTTGGAACTGGCAGTGGTGGCACAGGGGCTCCTGGGAATGGACTCCTTGCACGGAAGCAGGGTGTTCTTGGGgtaggttgggtgaggtcattgagggcgctgcatactcatcacaacacacc #### Eml3_ID2513_12 --> 0 - 1 Original Alignment AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGAT-GGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAg cacaccatctctgccaatctattccatttgttcttttttcttttctacagAAAGACAAAAAACCTAAGTTTATCCCATGCTTCATATTCCTGCCTGATCGGAGACATTCTGACTGGAGACTCTGAGGGGAACATACTTACCTGGGATCAGAGTATCTCAGATTTGAGGACGACAGGCAGGGGAGGAGCAAAAggtcaggtgaggcaggtatttggaacactgtaccgcagctgagagagtcag Alignment from CESAR AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGAT-GGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAg cacaccatctctgccaatctattccatttgttcttttttcttttctacagAAAGACAAAAAACCTAAGTTTATCCCATGCTTCATATTCCTGCCTGATCGGAGACATTCTGACTGGAGACTCTGAGGGGAACATACTTACCTGGGATCAGAGTATCTCAGATTTGAGGACGACAGGCAGGGGAGGAGCAAAAggtcaggtgaggcaggtatttggaacactgtaccgcagctgagagagtcag Alignment from Spaln_aa2Genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGAT-GGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG cacaccatctctgccaatctattccatttgttcttttttcttttctacagAAAGACAAAAAACCTAAGTTTATCCCATGCTTCATATTCCTGCCTGATcGGAGACATTCTGACTGGAGACTCTGAGGGGAACATACTTACCTGGGATCAGAGTATCTCAGATTTGAGGACGACAGGCAGGGGAGGAGCAAAAGgtcaggtgaggcaggtatttggaacactgtaccgcagctgagagagtcag Alignment from Spaln_nt2Genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGAT-GGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG cacaccatctctgccaatctattccatttgttcttttttcttttctacagAAAGACAAAAAACCTAAGTTTATCCCATGCTTCATATTCCTGCCTGATCGGAGACATTCTGACTGGAGACTCTGAGGGGAACATACTTACCTGGGATCAGAGTATCTCAGATTTGAGGACGACAGGCAGGGGAGGAGCAAAAGgtcaggtgaggcaggtatttggaacactgtaccgcagctgagagagtcag Alignment from Pairagon AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGAT-GGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG cacaccatctctgccaatctattccatttgttcttttttcttttctacagAAAGACAAAAAACCTAAGTTTATCCCATGCTTCATATTCCTGCCTGATCGGAGACATTCTGACTGGAGACTCTGAGGGGAACATACTTACCTGGGATCAGAGTATCTCAGATTTGAGGACGACAGGCAGGGGAGGAGCAAAAGgtcaggtgaggcaggtatttggaacactgtaccgcagctgagagagtcag Alignment from Exonerate_protein2genome AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGAT-GGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG cacaccatctctgccaatctattccatttgttcttttttcttttctacagAAAGACAAAAAACCTAAGTTTATCCCATGCTTCATATTCCTGCCTGATCGGAGACATTCTGACTGGAGACTCTGAGGGGAACATACTTACCTGGGATCAGAGTATCTCAGATTTGAGGACGACAGGCAGGGGAGGAGCAAAAGgtcaggtgaggcaggtatttggaacactgtaccgcagctgagagagtcag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AAATACAAGAAACCCAAGTTCATCCCTTGCTTTGTCTTCCTTCCTGAT-GGAGACATCCTCACTGGAGATTCCGAGGGGAACATTCTTACCTGGGGTCGAAGTGTCTCAGATTCCAAGACCCCAGGCAGGGGTGGGGCCAAAG cacaccatctctgccaatctattccatttgttcttttttcttttctacagAAAGACAAAAAACCTAAGTTTATCCCATGCTTCATATTCCTGCCTGATCGGAGACATTCTGACTGGAGACTCTGAGGGGAACATACTTACCTGGGATCAGAGTATCTCAGATTTGAGGACGACAGGCAGGGGAGGAGCAAAAGgtcaggtgaggcaggtatttggaacactgtaccgcagctgagagagtcag #### Eml3_ID2519_18 --> 2 - 0 Original Alignment atGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGC-CGCTTTGGCAGATGTATG caaatatggtagcccctgatgtcacaaaacttttaattatttctttatagatGGGTTGTACCTTGCGATAGGTTCACATGACAATATGATTTACATATACAGTATTTCCAGTTGTGGTACCAAATCTAGCCCGCTTTGGCAGGTGTATGgtgagccttcctggagggtactatttttcttactttggttatgggcacaa Alignment from CESAR atGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGC-CGCTTTGGCAGATGTATG caaatatggtagcccctgatgtcacaaaacttttaattatttctttatagatGGGTTGTACCTTGCGATAGGTTCACATGACAATATGATTTACATATACAGTATTTCCAGTTGTGGTACCAAATCTAGCCCGCTTTGGCAGGTGTATGgtgagccttcctggagggtactatttttcttactttggttatgggcacaa Alignment from Spaln_aa2Genome ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGC-CGCTTTGGCAGATGTATG caaatatggtagcccctgatgtcacaaaacttttaattatttctttatagATGGGTTGTACCTTGCGATAGGTTCACATGACAATATGATTTACATATACAGTATTTCCAGTTGTGGTACCAAATCTAGCcCGCTTTGGCAGGTGTATGgtgagccttcctggagggtactatttttcttactttggttatgggcacaa Alignment from Spaln_nt2Genome ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGCC-GCTTTGGCAGATGTATG caaatatggtagcccctgatgtcacaaaacttttaattatttctttatagATGGGTTGTACCTTGCGATAGGTTCACATGACAATATGATTTACATATACAGTATTTCCAGTTGTGGTACCAAATCTAGCCCGCTTTGGCAGGTGTATGgtgagccttcctggagggtactatttttcttactttggttatgggcacaa Alignment from Pairagon ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAG-CCGCTTTGGCAGATGTATG caaatatggtagcccctgatgtcacaaaacttttaattatttctttatagATGGGTTGTACCTTGCGATAGGTTCACATGACAATATGATTTACATATACAGTATTTCCAGTTGTGGTACCAAATCTAGCCCGCTTTGGCAGGTGTATGgtgagccttcctggagggtactatttttcttactttggttatgggcacaa Alignment from Exonerate_protein2genome ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGC-CGCTTTGGCAGATGTATG caaatatggtagcccctgatgtcacaaaacttttaattatttctttatagATGGGTTGTACCTTGCGATAGGTTCACATGACAATATGATTTACATATACAGTATTTCCAGTTGTGGTACCAAATCTAGCCCGCTTTGGCAGGTGTATGgtgagccttcctggagggtactatttttcttactttggttatgggcacaa Alignment from Exonerate_coding2genome ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCCAGC-CGCTTTGGCAGATGTATG caaatatggtagcccctgatgtcacaaaacttttaattatttctttatagATGGGTTGTACCTTGCGATAGGTTCACATGACAATATGATTTACATATACAGTATTTCCAGTTGTGGTACCAAATCTAGCCCGCTTTGGCAGGTGTATGgtgagccttcctggagggtactatttttcttactttggttatgggcacaa Alignment from GeneWise ATGGGTTGTACCTGGCTATTGGTTCCCATGACAACATGATCTACATCTATAGTGTTTCCAGTTGTGGCACTAAGTCC-AGCCGCTTTGGCAGATGTATG caaatatggtagcccctgatgtcacaaaacttttaattatttctttatagATGGGTTGTACCTTGCGATAGGTTCACATGACAATATGATTTACATATACAGTATTTCCAGTTGTGGTACCAAATCTAGCCCGCTTTGGCAGGTGTATGgtgagccttcctggagggtactatttttcttactttggttatgggcacaa #### Fads1_ID2690_4 --> 0 - 0 Original Alignment GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACC----TCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG atctgactccaacattggtatctaggggcacccactgtgtccctacccagGGTCAGGCAGGTTGGCTACAGCATGACTTTGGGCGCTTGTCAGTCTTTGGCACCTCACTCAATGTGGAATTACCTGCTGCACCATTTTGTGATTGGGCACCTAAAGgtaaagaatatcatcttgtccacccaagctataattgttcatagtttgtc Alignment from CESAR GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCG----ACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG atctgactccaacattggtatctaggggcacccactgtgtccctacccagGGTCAGGCAGGTTGGCTACAGCATGACTTTGGGCGCTTGTCAGTCTTTGGCACCTCACTCAATGTGGAATTACCTGCTGCACCATTTTGTGATTGGGCACCTAAAGgtaaagaatatcatcttgtccacccaagctataattgttcatagtttgtc Alignment from Spaln_aa2Genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCG----ACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG atctgactccaacattggtatctaggggcacccactgtgtccctacccagGGTCAGGCAGGTTGGCTACAGCATGACTTTGGGCGCTTGTCAGTCTTTGGCACCTCACTCaATGTGGAATTACCTGCTGCACCATTTTGTGATTGGGCACCTAAAGgtaaagaatatcatcttgtccacccaagctataattgttcatagtttgtc Alignment from Spaln_nt2Genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCG----ACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG atctgactccaacattggtatctaggggcacccactgtgtccctacccagGGTCAGGCAGGTTGGCTACAGCATGACTTTGGGCGCTTGTCAGTCTTTGGCACCTCACTCAATGTGGAATTACCTGCTGCACCATTTTGTGATTGGGCACCTAAAGgtaaagaatatcatcttgtccacccaagctataattgttcatagtttgtc Alignment from Pairagon GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCAC----CTCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG atctgactccaacattggtatctaggggcacccactgtgtccctacccagGGTCAGGCAGGTTGGCTACAGCATGACTTTGGGCGCTTGTCAGTCTTTGGCACCTCACTCAATGTGGAATTACCTGCTGCACCATTTTGTGATTGGGCACCTAAAGgtaaagaatatcatcttgtccacccaagctataattgttcatagtttgtc Alignment from Exonerate_protein2genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACC----TCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG atctgactccaacattggtatctaggggcacccactgtgtccctacccagGGTCAGGCAGGTTGGCTACAGCATGACTTTGGGCGCTTGTCAGTCTTTGGCACCTCACTCAATGTGGAATTACCTGCTGCACCATTTTGTGATTGGGCACCTAAAGgtaaagaatatcatcttgtccacccaagctataattgttcatagtttgtc Alignment from Exonerate_coding2genome GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACC----TCGACATGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG atctgactccaacattggtatctaggggcacccactgtgtccctacccagGGTCAGGCAGGTTGGCTACAGCATGACTTTGGGCGCTTGTCAGTCTTTGGCACCTCACTCAATGTGGAATTACCTGCTGCACCATTTTGTGATTGGGCACCTAAAGgtaaagaatatcatcttgtccacccaagctataattgttcatagtttgtc Alignment from GeneWise GCTCAGGCAGGTTGGCTACAGCATGACTTTGGGCACCTGTCAGTCTTTGGCACCTCG-ACA---TGGAATCACCTGCTACATCATTTTGTGATTGGCCACCTGAAG atctgactccaacattggtatctaggggcacccactgtgtccctacccagGGTCAGGCAGGTTGGCTACAGCATGACTTTGGGCGCTTGTCAGTCTTTGGCACCTCACTCAATGTGGAATTACCTGCTGCACCATTTTGTGATTGGGCACCTAAAGgtaaagaatatcatcttgtccacccaagctataattgttcatagtttgtc #### Fads1_ID2694_8 --> 0 - 2 Original Alignment GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTG-GGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCag gaatctttaagaacagcgaaaaccttgcatgcctctcttcaatcttgcagGATTTGGCCTGGATGCTCAGTTTCTATGCCCGCATCTTTTTAGCCTATATATCACTCCCACGGGCTGAAGGGCTTCCTAGGGCTTTTCTTCATTGTTaggtgagaataatcagtgaatttatacaagtaagcctagacaccagcagtaa Alignment from CESAR GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTG-GGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCag gaatctttaagaacagcgaaaaccttgcatgcctctcttcaatcttgcagGATTTGGCCTGGATGCTCAGTTTCTATGCCCGCATCTTTTTAGCCTATATATCACTCCCACGGGCTGAAGGGCTTCCTAGGGCTTTTCTTCATTGTTaggtgagaataatcagtgaatttatacaagtaagcctagacaccagcagtaa Alignment from Spaln_aa2Genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTG-GGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctttaagaacagcgaaaaccttgcatgcctctcttcaatcttgcagGATTTGGCCTGGATGCTCAGTTTCTATGCCCGCATCTTTTTAGCCTATATATCACTCCCAcGGGCTGAAGGGCTTCCTAGGGCTTTTCTTCATTGTTAGgtgagaataatcagtgaatttatacaagtaagcctagacaccagcagtaa Alignment from Spaln_nt2Genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTGCTG-GGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctttaagaacagcgaaaaccttgcatgcctctcttcaatcttgcagGATTTGGCCTGGATGCTCAGTTTCTATGCCCGCATCTTTTTAGCCTATATATCACTCCCACGGGCTGAAGGGCTTCCTAGGGCTTTTCTTCATTGTTAGgtgagaataatcagtgaatttatacaagtaagcctagacaccagcagtaa Alignment from Pairagon GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTT-----------------CACTTACATGCCGCTGCTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctttaagaacagcgaaaaccttgcatgcctctcttcaatcttgcagGATTTGGCCTGGATGCTCAGTTTCTATGCCCGCATCTTTTTAGCCTATATATCACTCCCAC----------------GGGCTGAAGGGCTTCCTAGGGCTTTTCTTCATTGTTAGgtgagaataatcagtgaatttatacaagtaagcctagacaccagcagtaa Alignment from Exonerate_protein2genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTG-CTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctttaagaacagcgaaaaccttgcatgcctctcttcaatcttgcagGATTTGGCCTGGATGCTCAGTTTCTATGCCCGCATCTTTTTAGCCTATATATCACTCCCACGGGCTGAAGGGCTTCCTAGGGCTTTTCTTCATTGTTAGgtgagaataatcagtgaatttatacaagtaagcctagacaccagcagtaa Alignment from Exonerate_coding2genome GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTG-CTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctttaagaacagcgaaaaccttgcatgcctctcttcaatcttgcagGATTTGGCCTGGATGCTCAGTTTCTATGCCCGCATCTTTTTAGCCTATATATCACTCCCACGGGCTGAAGGGCTTCCTAGGGCTTTTCTTCATTGTTAGgtgagaataatcagtgaatttatacaagtaagcctagacaccagcagtaa Alignment from GeneWise GACTTGGCCTGGATGCTCAGCTTCTATGCCCGCATCTTCTTCACTTACATGCCGCTG-CTGGGGCTGAAAGGCTTCCTGGGCCTTTTCTTCATTGTCAG gaatctttaagaacagcgaaaaccttgcatgcctctcttcaatcttgcagGATTTGGCCTGGATGCTCAGTTTCTATGCCCGCATCTTTTTAGCCTATATATCACTCCCACGGGCTGAAGGGCTTCCTAGGGCTTTTCTTCATTGTTAGgtgagaataatcagtgaatttatacaagtaagcctagacaccagcagtaa #### Fads1_ID2695_9 --> 1 - 0 Original Alignment gTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACA-CAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG tgctcttgttatcagttctacttctcttgaccgtgcccgatatctgacaggTTTCTGGAAAGCAACTGGTTTGTGTGGGTGACACCAGATGAACCATATCTCCATGCACATTGATCCAGATCGGAATGTGGACTGGGTCTCCACCCAGgtaagttatagtctacccagccttgggactcaagagttcagatcatgaat Alignment from CESAR gTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACA-CAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG tgctcttgttatcagttctacttctcttgaccgtgcccgatatctgacaggTTTCTGGAAAGCAACTGGTTTGTGTGGGTGACACCAGATGAACCATATCTCCATGCACATTGATCCAGATCGGAATGTGGACTGGGTCTCCACCCAGgtaagttatagtctacccagccttgggactcaagagttcagatcatgaat Alignment from Spaln_aa2Genome GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACA-CAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG tgctcttgttatcagttctacttctcttgaccgtgcccgatatctgacagGTTTCTGGAAAGCAACTGGTTTGTGTGGGTGACAcCAGATGAACCATATCTCCATGCACATTGATCCAGATCGGAATGTGGACTGGGTCTCCACCCAGgtaagttatagtctacccagccttgggactcaagagttcagatcatgaat Alignment from Spaln_nt2Genome GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACA-CAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG tgctcttgttatcagttctacttctcttgaccgtgcccgatatctgacagGTTTCTGGAAAGCAACTGGTTTGTGTGGGTGACACCAGATGAACCATATCTCCATGCACATTGATCCAGATCGGAATGTGGACTGGGTCTCCACCCAGgtaagttatagtctacccagccttgggactcaagagttcagatcatgaat Alignment from Pairagon GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACA-CAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG tgctcttgttatcagttctacttctcttgaccgtgcccgatatctgacagGTTTCTGGAAAGCAACTGGTTTGTGTGGGTGACACCAGATGAACCATATCTCCATGCACATTGATCCAGATCGGAATGTGGACTGGGTCTCCACCCAGgtaagttatagtctacccagccttgggactcaagagttcagatcatgaat Alignment from Exonerate_protein2genome GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACA-CAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG tgctcttgttatcagttctacttctcttgaccgtgcccgatatctgacagGTTTCTGGAAAGCAACTGGTTTGTGTGGGTGACACCAGATGAACCATATCTCCATGCACATTGATCCAGATCGGAATGTGGACTGGGTCTCCACCCAGgtaagttatagtctacccagccttgggactcaagagttcagatcatgaat Alignment from Exonerate_coding2genome GTTCCTGGAAAGCAACTGGTTTGTGTGGGTGACA-CAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG tgctcttgttatcagttctacttctcttgaccgtgcccgatatctgacagGTTTCTGGAAAGCAACTGGTTTGTGTGGGTGACACCAGATGAACCATATCTCCATGCACATTGATCCAGATCGGAATGTGGACTGGGTCTCCACCCAGgtaagttatagtctacccagccttgggactcaagagttcagatcatgaat Alignment from GeneWise GTTCCTGGAAAGCAACTGGTTTGTGTGGGTG-ACACAGATGAACCATATCCCCATGCACATTGATCACGACCGGAATGTGGACTGGGTCTCCACCCAG tgctcttgttatcagttctacttctcttgaccgtgcccgatatctgacagGTTTCTGGAAAGCAACTGGTTTGTGTGGGTGACACCAGATGAACCATATCTCCATGCACATTGATCCAGATCGGAATGTGGACTGGGTCTCCACCCAGgtaagttatagtctacccagccttgggactcaagagttcagatcatgaat #### Fam160b1_ID12356_7 --> 0 - 2 Original Alignment GACGGCCGGATAGCTGTGAAGGCCTGC-GAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGgg tccatttatgctaaatctgacgagctcccctttccgacttctgtctgcagGATGGCCGGATAGCTGTAAAGGCTTGCCAAGGGTTCGATGCTTTTGGTGAGCCTACCAGAGCCTGCAGCAGCCAAGTGCCTTGCTCAGAGCACTTGCCTGTGTGAGCTGCTGACTGGAAGACTCACCTCCCTGTACAAGTCATTACCTCAGTCAGTGGACCCCTTGGACATTGAAACGGTGGAGGCAGTAAACTGGgggtaaggatccattcggtacatctggtgatggttatcagggtttggtaagc Alignment from CESAR GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTG-ATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGgg tccatttatgctaaatctgacgagctcccctttccgacttctgtctgcagGATGGCCGGATAGCTGTAAAGGCTTGCCAAGGGTTCGATGCTTTTGGTGAGCCTACCAGAGCCTGCAGCAGCCAAGTGCCTTGCTCAGAGCACTTGCCTGTGTGAGCTGCTGACTGGAAGACTCACCTCCCTGTACAAGTCATTACCTCAGTCAGTGGACCCCTTGGACATTGAAACGGTGGAGGCAGTAAACTGGgggtaaggatccattcggtacatctggtgatggttatcagggtttggtaagc Alignment from Spaln_aa2Genome GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTG-ATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG tccatttatgctaaatctgacgagctcccctttccgacttctgtctgcagGATGGCCGGATAGCTGTAAAGGCTTGCCAAGGGTTCgATGCTTTTGGTGAGCCTACCAGAGCCTGCAGCAGCCAAGTGCCTTGCTCAGAGCACTTGCCTGTGTGAGCTGCTGACTGGAAGACTCACCTCCCTGTACAAGTCATTACCTCAGTCAGTGGACCCCTTGGACATTGAAACGGTGGAGGCAGTAAACTGGGGgtaaggatccattcggtacatctggtgatggttatcagggtttggtaagc Alignment from Spaln_nt2Genome GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTT-GATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG tccatttatgctaaatctgacgagctcccctttccgacttctgtctgcagGATGGCCGGATAGCTGTAAAGGCTTGCCAAGGGTTCGATGCTTTTGGTGAGCCTACCAGAGCCTGCAGCAGCCAAGTGCCTTGCTCAGAGCACTTGCCTGTGTGAGCTGCTGACTGGAAGACTCACCTCCCTGTACAAGTCATTACCTCAGTCAGTGGACCCCTTGGACATTGAAACGGTGGAGGCAGTAAACTGGGGgtaaggatccattcggtacatctggtgatggttatcagggtttggtaagc Alignment from Pairagon GACGGCCGGATAGCTGTGAAGGCCTG-CGAGGGCTTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG tccatttatgctaaatctgacgagctcccctttccgacttctgtctgcagGATGGCCGGATAGCTGTAAAGGCTTGCCAAGGGTTCGATGCTTTTGGTGAGCCTACCAGAGCCTGCAGCAGCCAAGTGCCTTGCTCAGAGCACTTGCCTGTGTGAGCTGCTGACTGGAAGACTCACCTCCCTGTACAAGTCATTACCTCAGTCAGTGGACCCCTTGGACATTGAAACGGTGGAGGCAGTAAACTGGGGgtaaggatccattcggtacatctggtgatggttatcagggtttggtaagc Alignment from Exonerate_protein2genome GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTG-ATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG tccatttatgctaaatctgacgagctcccctttccgacttctgtctgcagGATGGCCGGATAGCTGTAAAGGCTTGCCAAGGGTTCGATGCTTTTGGTGAGCCTACCAGAGCCTGCAGCAGCCAAGTGCCTTGCTCAGAGCACTTGCCTGTGTGAGCTGCTGACTGGAAGACTCACCTCCCTGTACAAGTCATTACCTCAGTCAGTGGACCCCTTGGACATTGAAACGGTGGAGGCAGTAAACTGGGGgtaaggatccattcggtacatctggtgatggttatcagggtttggtaagc Alignment from Exonerate_coding2genome GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGCTTG-ATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG tccatttatgctaaatctgacgagctcccctttccgacttctgtctgcagGATGGCCGGATAGCTGTAAAGGCTTGCCAAGGGTTCGATGCTTTTGGTGAGCCTACCAGAGCCTGCAGCAGCCAAGTGCCTTGCTCAGAGCACTTGCCTGTGTGAGCTGCTGACTGGAAGACTCACCTCCCTGTACAAGTCATTACCTCAGTCAGTGGACCCCTTGGACATTGAAACGGTGGAGGCAGTAAACTGGGGgtaaggatccattcggtacatctggtgatggttatcagggtttggtaagc Alignment from GeneWise GACGGCCGGATAGCTGTGAAGGCCTGCGAGGGC-TTGATGCTCTTGGTGAGCCTACCGGAGCCTGCGGCTGCCAAGTGCCTTGCTCAGAGCACCTGCCTGTGCGAGCTGCTGACCGGCAGACTCACCTCCCTGTACAAGGCTCTACCTCAGTCAGTGGACCCCTTAGACATTGAAACCGTGGAGGCAGTTAACTGGGG tccatttatgctaaatctgacgagctcccctttccgacttctgtctgcagGATGGCCGGATAGCTGTAAAGGCTTGCCAAGGGTTCGATGCTTTTGGTGAGCCTACCAGAGCCTGCAGCAGCCAAGTGCCTTGCTCAGAGCACTTGCCTGTGTGAGCTGCTGACTGGAAGACTCACCTCCCTGTACAAGTCATTACCTCAGTCAGTGGACCCCTTGGACATTGAAACGGTGGAGGCAGTAAACTGGGGgtaaggatccattcggtacatctggtgatggttatcagggtttggtaagc #### Fam160b1_ID12357_8 --> 1 - 0 Original Alignment gTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGG-TTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG ttcctttgtccagatcttgtgaaccttttttccatttctttgttctgcaggTTGGACTCTTACAGCCACAAAGAAGACACATCAGCGTTCCCGGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGCTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtaaagagcttgatgttatcttcatagtgcttatggacatcgagccgtct Alignment from CESAR gTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGG-TTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG ttcctttgtccagatcttgtgaaccttttttccatttctttgttctgcaggTTGGACTCTTACAGCCACAAAGAAGACACATCAGCGTTCCCGGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGCTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtaaagagcttgatgttatcttcatagtgcttatggacatcgagccgtct Alignment from Spaln_aa2Genome GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGG-TTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG ttcctttgtccagatcttgtgaaccttttttccatttctttgttctgcagGTTGGACTCTTACAGCCACAAAGAAGACACATCAGCGTTCCCGGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGcTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtaaagagcttgatgttatcttcatagtgcttatggacatcgagccgtct Alignment from Spaln_nt2Genome GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGG-TTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG ttcctttgtccagatcttgtgaaccttttttccatttctttgttctgcagGTTGGACTCTTACAGCCACAAAGAAGACACATCAGCGTTCCCGGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGCTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtaaagagcttgatgttatcttcatagtgcttatggacatcgagccgtct Alignment from Pairagon GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGG-TTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG ttcctttgtccagatcttgtgaaccttttttccatttctttgttctgcagGTTGGACTCTTACAGCCACAAAGAAGACACATCAGCGTTCCCGGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGCTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtaaagagcttgatgttatcttcatagtgcttatggacatcgagccgtct Alignment from Exonerate_protein2genome GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGG-TTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG ttcctttgtccagatcttgtgaaccttttttccatttctttgttctgcagGTTGGACTCTTACAGCCACAAAGAAGACACATCAGCGTTCCCGGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGCTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtaaagagcttgatgttatcttcatagtgcttatggacatcgagccgtct Alignment from Exonerate_coding2genome GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGG-TTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG ttcctttgtccagatcttgtgaaccttttttccatttctttgttctgcagGTTGGACTCTTACAGCCACAAAGAAGACACATCAGCGTTCCCGGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGCTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtaaagagcttgatgttatcttcatagtgcttatggacatcgagccgtct Alignment from GeneWise GTTGGACTCATACAGCCATAAAGAAGACGCTTCGGCGTTCCCGGGGAAGCGGGCCTTAATTTCATTTCTTTCCTGG-TTCGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAG ttcctttgtccagatcttgtgaaccttttttccatttctttgttctgcagGTTGGACTCTTACAGCCACAAAGAAGACACATCAGCGTTCCCGGGGAAGCGGGCCTTAATTGCGTTTCTTTCCTGGCTTTGATTACTGTGATCAGCTCATCAAGGAGGCACAAAAGgtaaagagcttgatgttatcttcatagtgcttatggacatcgagccgtct #### Fam160b1_ID12358_9 --> 0 - 2 Original Alignment ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTT-GGTGTCATGGAACCCCAGCTGATGCAGac attatagtatggatgtcataagtcttctgtttctgttttcttcttttcagACGGCTGCTGTAGCTCTTGCCAAAGCTATCCACAAAAGGTTCTTCGTTCGGTGTTACGGAACCCCAGCTGATGCAAacgtaagggtctactgactttgtaggaaacaaactctgctgtatcttttcct Alignment from CESAR ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTT-GGTGTCATGGAACCCCAGCTGATGCAGac attatagtatggatgtcataagtcttctgtttctgttttcttcttttcagACGGCTGCTGTAGCTCTTGCCAAAGCTATCCACAAAAGGTTCTTCGTTCGGTGTTACGGAACCCCAGCTGATGCAAacgtaagggtctactgactttgtaggaaacaaactctgctgtatcttttcct Alignment from Spaln_aa2Genome ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTT-GGTGTCATGGAACCCCAGCTGATGCAGAC attatagtatggatgtcataagtcttctgtttctgttttcttcttttcagACGGCTGCTGTAGCTCTTGCCAAAGCTATCCACAAAAGGTTCTTCGTTcGGTGTTACGGAACCCCAGCTGATGCAAACgtaagggtctactgactttgtaggaaacaaactctgctgtatcttttcct Alignment from Spaln_nt2Genome ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTT-GGTGTCATGGAACCCCAGCTGATGCAGAC attatagtatggatgtcataagtcttctgtttctgttttcttcttttcagACGGCTGCTGTAGCTCTTGCCAAAGCTATCCACAAAAGGTTCTTCGTTCGGTGTTACGGAACCCCAGCTGATGCAAACgtaagggtctactgactttgtaggaaacaaactctgctgtatcttttcct Alignment from Pairagon ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTT-GGTGTCATGGAACCCCAGCTGATGCAGAC attatagtatggatgtcataagtcttctgtttctgttttcttcttttcagACGGCTGCTGTAGCTCTTGCCAAAGCTATCCACAAAAGGTTCTTCGTTCGGTGTTACGGAACCCCAGCTGATGCAAACgtaagggtctactgactttgtaggaaacaaactctgctgtatcttttcct Alignment from Exonerate_protein2genome ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTTGTT-GGTGTCATGGAACCCCAGCTGATGCAGAC attatagtatggatgtcataagtcttctgtttctgttttcttcttttcagACGGCTGCTGTAGCTCTTGCCAAAGCTATCCACAAAAGGTTCTTCGTTCGGTGTTACGGAACCCCAGCTGATGCAAACgtaagggtctactgactttgtaggaaacaaactctgctgtatcttttcct Alignment from Exonerate_coding2genome CAAAGCCATCCACGAAAGGTTCTTTGT attatagtatggatgtcataagtcttctgtttctgttttcttcttttcagacggctgctgtagctcttgccaaagctatccacaaaaggttcttcgttcggtgttacggaaccccagctgatgcaaacgtaagggtctactgactttgtagGAAACAAACTCTGCTGTATCTTTTCCT Alignment from GeneWise ACTGCTGCTGTTGCTCTCGCCAAAGCCATCCACGAAAGGTTCTTT-GTTGGTGTCATGGAACCCCAGCTGATGCAGAC attatagtatggatgtcataagtcttctgtttctgttttcttcttttcagACGGCTGCTGTAGCTCTTGCCAAAGCTATCCACAAAAGGTTCTTCGTTCGGTGTTACGGAACCCCAGCTGATGCAAACgtaagggtctactgactttgtaggaaacaaactctgctgtatcttttcct #### Fam160b1_ID12361_12 --> 1 - 2 Original Alignment aGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTG-CCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACag tgagagaatatcttcatgagtgatttgagacgcttctgttccatgcccagaGATCTAGAAGAAGATCCATTATTTACAGATATTTCACCAGACAACACTCTGCCCCAACCAAGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCAAAAAATGATGGCAAGACAGAAGTGCATAAAGTCCTCAACaggtaagtcaattgtttttggtgagtacatctgcatttgacctcagctatca Alignment from CESAR aGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCC-AACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACag tgagagaatatcttcatgagtgatttgagacgcttctgttccatgcccagaGATCTAGAAGAAGATCCATTATTTACAGATATTTCACCAGACAACACTCTGCCCCAACCAAGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCAAAAAATGATGGCAAGACAGAAGTGCATAAAGTCCTCAACaggtaagtcaattgtttttggtgagtacatctgcatttgacctcagctatca Alignment from Spaln_aa2Genome AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTGCCC-AACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagagaatatcttcatgagtgatttgagacgcttctgttccatgcccagAGATCTAGAAGAAGATCCATTATTTACAGATATTTCACCAGACAACACTCTGCCCcAACCAAGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCAAAAAATGATGGCAAGACAGAAGTGCATAAAGTCCTCAACAGgtaagtcaattgtttttggtgagtacatctgcatttgacctcagctatca Alignment from Spaln_nt2Genome AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTG-CCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagagaatatcttcatgagtgatttgagacgcttctgttccatgcccagAGATCTAGAAGAAGATCCATTATTTACAGATATTTCACCAGACAACACTCTGCCCCAACCAAGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCAAAAAATGATGGCAAGACAGAAGTGCATAAAGTCCTCAACAGgtaagtcaattgtttttggtgagtacatctgcatttgacctcagctatca Alignment from Pairagon AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTG-CCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagagaatatcttcatgagtgatttgagacgcttctgttccatgcccagAGATCTAGAAGAAGATCCATTATTTACAGATATTTCACCAGACAACACTCTGCCCCAACCAAGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCAAAAAATGATGGCAAGACAGAAGTGCATAAAGTCCTCAACAGgtaagtcaattgtttttggtgagtacatctgcatttgacctcagctatca Alignment from Exonerate_protein2genome AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTG-CCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagagaatatcttcatgagtgatttgagacgcttctgttccatgcccagAGATCTAGAAGAAGATCCATTATTTACAGATATTTCACCAGACAACACTCTGCCCCAACCAAGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCAAAAAATGATGGCAAGACAGAAGTGCATAAAGTCCTCAACAGgtaagtcaattgtttttggtgagtacatctgcatttgacctcagctatca Alignment from Exonerate_coding2genome AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACTCTG-CCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagagaatatcttcatgagtgatttgagacgcttctgttccatgcccagAGATCTAGAAGAAGATCCATTATTTACAGATATTTCACCAGACAACACTCTGCCCCAACCAAGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCAAAAAATGATGGCAAGACAGAAGTGCATAAAGTCCTCAACAGgtaagtcaattgtttttggtgagtacatctgcatttgacctcagctatca Alignment from GeneWise AGATCTGGAGGAAGATCCATTATTTACTGACATTTCACCAGATAACACT-CTGCCCAACCAAGAGTGGATTTGTTCACCCCGCACCAGCCCAGACCATCCCAAAAATGATGGCAAGACGGAAGTGCATAAAGTGGTCAACAG tgagagaatatcttcatgagtgatttgagacgcttctgttccatgcccagAGATCTAGAAGAAGATCCATTATTTACAGATATTTCACCAGACAACACTCTGCCCCAACCAAGAGTGGATATGTTCACCCCGCACCAGCCCAGACCATCCAAAAAATGATGGCAAGACAGAAGTGCATAAAGTCCTCAACAGgtaagtcaattgtttttggtgagtacatctgcatttgacctcagctatca #### Fas_ID6925_6 --> 2 - 1 Original Alignment gtCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTT-TTGTTAATTCCACTTg tagtcatctgtccatgcttaaaaaaacttctttctttgctcctcccacaggtCCCAGAAATTGCCTATGGTTGTTGACCATCCTTGTTCTTGTTGATTCCACTTggtaagtaaaggtgttcagagtgaatattacagtagtgttgagaagtaacc Alignment from CESAR gtCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTT-TTGTTAATTCCACTTg tagtcatctgtccatgcttaaaaaaacttctttctttgctcctcccacaggtCCCAGAAATTGCCTATGGTTGTTGACCATCCTTGTTCTTGTTGATTCCACTTggtaagtaaaggtgttcagagtgaatattacagtagtgttgagaagtaacc Alignment from Spaln_aa2Genome GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTT-TTGTTAATTCCACTTG tagtcatctgtccatgcttaaaaaaacttctttctttgctcctcccacagGTCCCAGAAATTGCCTATGGTTGTTGACCATCCTTGTTcTTGTTGATTCCACTTGgtaagtaaaggtgttcagagtgaatattacagtagtgttgagaagtaacc Alignment from Spaln_nt2Genome GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTT-TTGTTAATTCCACTTG tagtcatctgtccatgcttaaaaaaacttctttctttgctcctcccacagGTCCCAGAAATTGCCTATGGTTGTTGACCATCCTTGTTCTTGTTGATTCCACTTGgtaagtaaaggtgttcagagtgaatattacagtagtgttgagaagtaacc Alignment from Pairagon GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTT-TTGTTAATTCCACTTG tagtcatctgtccatgcttaaaaaaacttctttctttgctcctcccacagGTCCCAGAAATTGCCTATGGTTGTTGACCATCCTTGTTCTTGTTGATTCCACTTGgtaagtaaaggtgttcagagtgaatattacagtagtgttgagaagtaacc Alignment from Exonerate_protein2genome GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTT-TTGTTAATTCCACTTG tagtcatctgtccatgcttaaaaaaacttctttctttgctcctcccacagGTCCCAGAAATTGCCTATGGTTGTTGACCATCCTTGTTCTTGTTGATTCCACTTGgtaagtaaaggtgttcagagtgaatattacagtagtgttgagaagtaacc Alignment from Exonerate_coding2genome GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTT-TTGTTAATTCCACTTG tagtcatctgtccatgcttaaaaaaacttctttctttgctcctcccacagGTCCCAGAAATTGCCTATGGTTGTTGACCATCCTTGTTCTTGTTGATTCCACTTGgtaagtaaaggtgttcagagtgaatattacagtagtgttgagaagtaacc Alignment from GeneWise GTCCCAGAAATCGCCTATGGTTGTTGACCATCCTTGTTTTG tagtcatctgtccatgcttaaaaaaacttctttctttgctcctcccacagGTCCCAGAAATTGCCTATGGTTGTTGACCATCCTTGTTCTTgttgattccacttggtaagtaaaggtgttcagagtgaatattacagtagtgttgagaagtaacc #### Fau_ID1403_3 --> 2 - 0 Original Alignment gtAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAAGTGAGA-GGTCAGACTCCCAAG ctctgtgatttggctaattagtctgacccaaatttcattttgctttttaggtATAGTTCATGGCTCCCTGGCCCGAGCTGGAAAAGTAAGACGGCCAGACTCCCAAAgtaaggggcaggggtgaagcttcctttaagccagtatgaggagcaaggac Alignment from CESAR gtAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAAGTGAGA-GGTCAGACTCCCAAG ctctgtgatttggctaattagtctgacccaaatttcattttgctttttaggtATAGTTCATGGCTCCCTGGCCCGAGCTGGAAAAGTAAGACGGCCAGACTCCCAAAgtaaggggcaggggtgaagcttcctttaagccagtatgaggagcaaggac Alignment from Spaln_aa2Genome GTAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAAGTGAGA-GGTCAGACTCCCAAG ctctgtgatttggctaattagtctgacccaaatttcattttgctttttagGTATAGTTCATGGCTCCCTGGCCCGAGCTGGAAAAGTAAGAcGGCCAGACTCCCAAAgtaaggggcaggggtgaagcttcctttaagccagtatgaggagcaaggac Alignment from Spaln_nt2Genome GTAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAAGTGAGA-GGTCAGACTCCCAAG ctctgtgatttggctaattagtctgacccaaatttcattttgctttttagGTATAGTTCATGGCTCCCTGGCCCGAGCTGGAAAAGTAAGACGGCCAGACTCCCAAAgtaaggggcaggggtgaagcttcctttaagccagtatgaggagcaaggac Alignment from Pairagon GTAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAAGTGAGA-GGTCAGACTCCCAAG ctctgtgatttggctaattagtctgacccaaatttcattttgctttttagGTATAGTTCATGGCTCCCTGGCCCGAGCTGGAAAAGTAAGACGGCCAGACTCCCAAAgtaaggggcaggggtgaagcttcctttaagccagtatgaggagcaaggac Alignment from Exonerate_protein2genome GTAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAAGTGAGA-GGTCAGACTCCCAAG ctctgtgatttggctaattagtctgacccaaatttcattttgctttttagGTATAGTTCATGGCTCCCTGGCCCGAGCTGGAAAAGTAAGACGGCCAGACTCCCAAAgtaaggggcaggggtgaagcttcctttaagccagtatgaggagcaaggac Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ctctgtgatttggctaattagtctgacccaaatttcattttgctttttaggtatagttcatggctccctggcccgagctggaaaagtaagacggccagactcccaaagtaaggggcaggggtgaagcttcctttaagccagtatgaggagcaaggac #### Fbxl15_ID9850_2 --> 1 - 0 Original Alignment gCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGC-TTCGACGCCGCTCAG tacactgtaaatgcacttctcttacaggaccagtgtctaccccgatctagaCTCCTAGATCTGCCTTGGGAAGATTTGCTGCTCCTGCATGTTGTAAACTGGGTCCCACTACGCCAACTGCTCCGGCTGCAGCAGGTGAGTAGAGCCTTTGGGGCACTTATTCAGTTGCACTTGGCCAGGTTACGCCGCCTTTGATGCTGCTCAGgtactgtggtgaccgggggtgcccttgtccttgtgctgctgtgcccttgt Alignment from CESAR gCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGC-TTCGACGCCGCTCAG tacactgtaaatgcacttctcttacaggaccagtgtctaccccgatctagaCTCCTAGATCTGCCTTGGGAAGATTTGCTGCTCCTGCATGTTGTAAACTGGGTCCCACTACGCCAACTGCTCCGGCTGCAGCAGGTGAGTAGAGCCTTTGGGGCACTTATTCAGTTGCACTTGGCCAGGTTACGCCGCCTTTGATGCTGCTCAGgtactgtggtgaccgggggtgcccttgtccttgtgctgctgtgcccttgt Alignment from Spaln_aa2Genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGC-TTCGACGCCGCTCAG tacactgtaaatgcacttctcttacaggaccagtgtctaccccgatctagACTCCTAGATCTGCCTTGGGAAGATTTGCTGCTCCTGCATGTTGTAAACTGGGTCCCACTACGCCAACTGCTCCGGCTGCAGCAGGTGAGTAGAGCCTTTGGGGCACTTATTCAGTTGCACTTGGCCAGGTTACGCCGCcTTTGATGCTGCTCAGgtactgtggtgaccgggggtgcccttgtccttgtgctgctgtgcccttgt Alignment from Spaln_nt2Genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGC-TTCGACGCCGCTCAG tacactgtaaatgcacttctcttacaggaccagtgtctaccccgatctagACTCCTAGATCTGCCTTGGGAAGATTTGCTGCTCCTGCATGTTGTAAACTGGGTCCCACTACGCCAACTGCTCCGGCTGCAGCAGGTGAGTAGAGCCTTTGGGGCACTTATTCAGTTGCACTTGGCCAGGTTACGCCGCCTTTGATGCTGCTCAGgtactgtggtgaccgggggtgcccttgtccttgtgctgctgtgcccttgt Alignment from Pairagon GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGC-TTCGACGCCGCTCAG tacactgtaaatgcacttctcttacaggaccagtgtctaccccgatctagACTCCTAGATCTGCCTTGGGAAGATTTGCTGCTCCTGCATGTTGTAAACTGGGTCCCACTACGCCAACTGCTCCGGCTGCAGCAGGTGAGTAGAGCCTTTGGGGCACTTATTCAGTTGCACTTGGCCAGGTTACGCCGCCTTTGATGCTGCTCAGgtactgtggtgaccgggggtgcccttgtccttgtgctgctgtgcccttgt Alignment from Exonerate_protein2genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGC-TTCGACGCCGCTCAG tacactgtaaatgcacttctcttacaggaccagtgtctaccccgatctagACTCCTAGATCTGCCTTGGGAAGATTTGCTGCTCCTGCATGTTGTAAACTGGGTCCCACTACGCCAACTGCTCCGGCTGCAGCAGGTGAGTAGAGCCTTTGGGGCACTTATTCAGTTGCACTTGGCCAGGTTACGCCGCCTTTGATGCTGCTCAGgtactgtggtgaccgggggtgcccttgtccttgtgctgctgtgcccttgt Alignment from Exonerate_coding2genome GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGCCGC-TTCGACGCCGCTCAG tacactgtaaatgcacttctcttacaggaccagtgtctaccccgatctagACTCCTAGATCTGCCTTGGGAAGATTTGCTGCTCCTGCATGTTGTAAACTGGGTCCCACTACGCCAACTGCTCCGGCTGCAGCAGGTGAGTAGAGCCTTTGGGGCACTTATTCAGTTGCACTTGGCCAGGTTACGCCGCCTTTGATGCTGCTCAGgtactgtggtgaccgggggtgcccttgtccttgtgctgctgtgcccttgt Alignment from GeneWise GCTCCTGGACCTGCCCTGGGAAGACGTGCTGCTCCCGCACGTCCTGAACTGGGTCCCGCTGCGCCAGCTGCTCCGGCTGCAGCGCGTCAGTCGCGCCTTCCGGGCGCTCGTTCAGCTGCACTTGGCGAGGCTGCGC-CGCTTCGACGCCGCTCAG tacactgtaaatgcacttctcttacaggaccagtgtctaccccgatctagACTCCTAGATCTGCCTTGGGAAGATTTGCTGCTCCTGCATGTTGTAAACTGGGTCCCACTACGCCAACTGCTCCGGCTGCAGCAGGTGAGTAGAGCCTTTGGGGCACTTATTCAGTTGCACTTGGCCAGGTTACGCCGCCTTTGATGCTGCTCAGgtactgtggtgaccgggggtgcccttgtccttgtgctgctgtgcccttgt #### Fibp_ID1005_2 --> 2 - 2 Original Alignment tgAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGA-CAGACACTCCTCATCGAGag cggggccttatagggttatattcctcacgcttgacccagtatcttcacagtgAATGATGCAGTGGCTCTCCATGTTCGCTCTGGTATTTTAGAACAGACTGGGGCCACTACAGGAGTGCTGCAGAGTGACACAATGGATCACTACCGTACCTTTCGCATGCTTGAACGACTATTATGTTCACCCCCAAAGCTCCTG------CTTGTATTTCAGATTCCCCCTGCCCGACCAGACTCTCCTCATTGAAaggtgagtaacaggatggttagtggggtgggtcctggccagagggtcatcgt Alignment from CESAR tgAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGA-CAGACACTCCTCATCGAGag cggggccttatagggttatattcctcacgcttgacccagtatcttcacagtgAATGATGCAGTGGCTCTCCATGTTCGCTCTGGTATTTTAGAACAGACTGGGGCCACTACAGGAGTGCTGCAGAGTGACACAATGGATCACTACCGTACCTTTCGCATGCTTGAACGACTATTATGTTCACCCCCAAAGCTCCTG------CTTGTATTTCAGATTCCCCCTGCCCGACCAGACTCTCCTCATTGAAaggtgagtaacaggatggttagtggggtgggtcctggccagagggtcatcgt Alignment from Spaln_aa2Genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGA-CAGACACTCCTCATCGAGAG cggggccttatagggttatattcctcacgcttgacccagtatcttcacagTGAATGATGCAGTGGCTCTCCATGTTCGCTCTGGTATTTTAGAACAGACTGGGGCCACTACAGGAGTGCTGCAGAGTGACACAATGGATCACTACCGTACCTTTCGCATGCTTGAACGACTATTATGTTCACCCCCAAAGCTCCTG------CTTGTATTTCAGATTCCCCCTGCCCGAcCAGACTCTCCTCATTGAAAGgtgagtaacaggatggttagtggggtgggtcctggccagagggtcatcgt Alignment from Spaln_nt2Genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGAC-AGACACTCCTCATCGAGAG cggggccttatagggttatattcctcacgcttgacccagtatcttcacagTGAATGATGCAGTGGCTCTCCATGTTCGCTCTGGTATTTTAGAACAGACTGGGGCCACTACAGGAGTGCTGCAGAGTGACACAATGGATCACTACCGTACCTTTCGCATGCTTGAACGACTATTATGTTCACCCCCAAAGCT------CCTGCTTGTATTTCAGATTCCCCCTGCCCGACCAGACTCTCCTCATTGAAAGgtgagtaacaggatggttagtggggtgggtcctggccagagggtcatcgt Alignment from Pairagon TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCT------------------GCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGA-CAGACACTCCTCATCGAGAG cggggccttatagggttatattcctcacgcttgacccagtatcttcacagTGAATGATGCAGTGGCTCTCCATGTTCGCTCTGGTATTTTAGAACAGACTGGGGCCACTACAGGAGTGCTGCAGAGTGACACAATGGATCACTACCGTACCTTTCGCATGCTTGAACGACTATTATGTTCACCCCCAAAGCT------------------------CCTGCTTGTATTTCAGATTCCCCCTGCCCGACCAGACTCTCCTCATTGAAAGgtgagtaacaggatggttagtggggtgggtcctggccagagggtcatcgt Alignment from Exonerate_protein2genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGA-CAGACACTCCTCATCGAGAG cggggccttatagggttatattcctcacgcttgacccagtatcttcacagTGAATGATGCAGTGGCTCTCCATGTTCGCTCTGGTATTTTAGAACAGACTGGGGCCACTACAGGAGTGCTGCAGAGTGACACAATGGATCACTACCGTACCTTTCGCATGCTTGAACGACTATTATGTTCACCCCCAAAGCTCCTG------CTTGTATTTCAGATTCCCCCTGCCCGACCAGACTCTCCTCATTGAAAGgtgagtaacaggatggttagtggggtgggtcctggccagagggtcatcgt Alignment from Exonerate_coding2genome TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGA-CAGACACTCCTCATCGAGAG cggggccttatagggttatattcctcacgcttgacccagtatcttcacagTGAATGATGCAGTGGCTCTCCATGTTCGCTCTGGTATTTTAGAACAGACTGGGGCCACTACAGGAGTGCTGCAGAGTGACACAATGGATCACTACCGTACCTTTCGCATGCTTGAACGACTATTATGTTCACCCCCAAAGCTCCTG------CTTGTATTTCAGATTCCCCCTGCCCGACCAGACTCTCCTCATTGAAAGgtgagtaacaggatggttagtggggtgggtcctggccagagggtcatcgt Alignment from GeneWise TGAACGATGCAGTGGCTCTGCGAGTACGCTCCGGAATCTTGGAGCAGACGGGAGCCACCACAGGAGTGCTGCAGAGCGACACCATGGACCACTACCGCACCTTTCACATGCTTGAGCGTCTGCTGCACGCGCCGCCGAAGCTGCTGCACCAGCTCATCTTCCAGATTCCTCCCTCCCGA-CAGACACTCCTCATCGAGAG cggggccttatagggttatattcctcacgcttgacccagtatcttcacagTGAATGATGCAGTGGCTCTCCATGTTCGCTCTGGTATTTTAGAACAGACTGGGGCCACTACAGGAGTGCTGCAGAGTGACACAATGGATCACTACCGTACCTTTCGCATGCTTGAACGACTATTATGTTCACCCCCAAAGCTCCTG------CTTGTATTTCAGATTCCCCCTGCCCGACCAGACTCTCCTCATTGAAAGgtgagtaacaggatggttagtggggtgggtcctggccagagggtcatcgt #### Fibp_ID1008_5 --> 1 - 1 Original Alignment gGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATG-ATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAg ttcaagtataagatagataaagagcatacctgatggcttcctgtctccaggGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAAACTGGGAAAAAAAGGCTGCAGCACCTGAGCTTTGGGGCCTTTGCCTTCCGTGCAGAACTCATGCATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAggtgagtaagctccatacccctcatggtactacttatcttgtatcagtttc Alignment from CESAR gGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATG-ATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAg ttcaagtataagatagataaagagcatacctgatggcttcctgtctccaggGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAAACTGGGAAAAAAAGGCTGCAGCACCTGAGCTTTGGGGCCTTTGCCTTCCGTGCAGAACTCATGCATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAggtgagtaagctccatacccctcatggtactacttatcttgtatcagtttc Alignment from Spaln_aa2Genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATG-ATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagtataagatagataaagagcatacctgatggcttcctgtctccagGGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAAACTGGGAAAAAAAGGCTGCAGCACCTGAGCTTTGGGGCCTTTGCCTTCCGTGCAGAACTCATGcATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtgagtaagctccatacccctcatggtactacttatcttgtatcagtttc Alignment from Spaln_nt2Genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATG-ATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagtataagatagataaagagcatacctgatggcttcctgtctccagGGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAAACTGGGAAAAAAAGGCTGCAGCACCTGAGCTTTGGGGCCTTTGCCTTCCGTGCAGAACTCATGCATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtgagtaagctccatacccctcatggtactacttatcttgtatcagtttc Alignment from Pairagon GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATG-ATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagtataagatagataaagagcatacctgatggcttcctgtctccagGGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAAACTGGGAAAAAAAGGCTGCAGCACCTGAGCTTTGGGGCCTTTGCCTTCCGTGCAGAACTCATGCATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtgagtaagctccatacccctcatggtactacttatcttgtatcagtttc Alignment from Exonerate_protein2genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATG-ATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagtataagatagataaagagcatacctgatggcttcctgtctccagGGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAAACTGGGAAAAAAAGGCTGCAGCACCTGAGCTTTGGGGCCTTTGCCTTCCGTGCAGAACTCATGCATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtgagtaagctccatacccctcatggtactacttatcttgtatcagtttc Alignment from Exonerate_coding2genome GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATG-ATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagtataagatagataaagagcatacctgatggcttcctgtctccagGGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAAACTGGGAAAAAAAGGCTGCAGCACCTGAGCTTTGGGGCCTTTGCCTTCCGTGCAGAACTCATGCATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtgagtaagctccatacccctcatggtactacttatcttgtatcagtttc Alignment from GeneWise GGATTACGCAGCCATCGTCTTTTTTGCCAACAACCGCTTTGAAACAGGAAAGAAAAAGCTGCAGTACCTGAGCTTTGGGGACTTTGCCTTCTGTGCAGAGCTTATG-ATCCAGAACTGGACCCTTGGAGCCGTCGGTGAGGCCCCCACTGACCCAG ttcaagtataagatagataaagagcatacctgatggcttcctgtctccagGGATTATGCAGCTATTGTTTTCTTTGCCAATAATGACTTTGAAACTGGGAAAAAAAGGCTGCAGCACCTGAGCTTTGGGGCCTTTGCCTTCCGTGCAGAACTCATGCATCCAGAATTGGACCCTTGGGGCCATTGGTGAGGCCCCAACTGATCCAGgtgagtaagctccatacccctcatggtactacttatcttgtatcagtttc #### Fkbp2_ID1945_4 --> 2 - 1 Original Alignment ggTATGGAGAGCGGGGA-GCCCCCCCAAAGATCCCAg gtGGAGCAACC agaaaagtgcccagccctcagttaacatagtttttatttttattgcttaggtTATGGGGAATGGGGACGCCCCCCCAAAGATCCCAggtaaaacccctaccactttcttttgttctgcttttggaggtGGAGCAACC Alignment from CESAR ggTATGGAGAGCGGGGA-GCCCCCCCAAAGATCCCAg gtGGAGCAACC agaaaagtgcccagccctcagttaacatagtttttatttttattgcttaggtTATGGGGAATGGGGACGCCCCCCCAAAGATCCCAggtaaaacccctaccactactattttacttatatttataggtGGAGCAACC Alignment from Spaln_aa2Genome GGTATGGAGAGCGGGGA-GCCCCCCCAAAGATCCCAG GTGGAGCAACC agaaaagtgcccagccctcagttaacatagtttttatttttattgcttagGTTATGGGGAATGGGGAcGCCCCCCCAAAGATCCCAGgtaaaacccctaccactttcttttgttctgcttttggagGTGGAGCAACC Alignment from Spaln_nt2Genome GGTATGGAGAGCGGGGA-GCCCCCCCAAAGATCCCAG GTGGAGCAACC agaaaagtgcccagccctcagttaacatagtttttatttttattgcttagGTTATGGGGAATGGGGACGCCCCCCCAAAGATCCCAGgtaaaacccctaccactttcttttgttctgcttttggagGTGGAGCAACC Alignment from Pairagon GGTATGGAGAGCGGGGA-GCCCCCCCAAAGATCCCAG GTGGAGCAACC agaaaagtgcccagccctcagttaacatagtttttatttttattgcttagGTTATGGGGAATGGGGACGCCCCCCCAAAGATCCCAGgtaaaacccctaccactttcttttgttctgcttttggagGTGGAGCAACC Alignment from Exonerate_protein2genome GGTATGGAGAGCGGGGA-GCCCCCCCAAAGATCCCAG GTGGAGCAACC agaaaagtgcccagccctcagttaacatagtttttatttttattgcttagGTTATGGGGAATGGGGACGCCCCCCCAAAGATCCCAGgtaaaacccctaccactttcttttgttctgcttttggagGTGGAGCAACC Alignment from Exonerate_coding2genome GGTATGGAGAGCGGGGA---GCCCCCCCAAAGATCCCAGGTGGAGCAACC agaaaagtgcccagccctcagttaacatagtttttatttttattgcttaggttatggggaatggggacgcccccccaaagatcccagGTAAAACCCCTACCACTTTCTTTTGTTCTGCTTTTGGAGGTGGAGCAACC Alignment from GeneWise GGTATGGAGAGCGGGGA-GCCCCCCCAAAGATCCCAGGT---------------------------------------GGAGCAACC agaaaagtgcccagccctcagttaacatagtttttatttttattgcttagGTTATGGGGAATGGGGACGCCCCCCCAAAGATCCCAGGTAAAACCCCTACCACTTTCTTTTGTTCTGCTTTTGGAGGTGGAGCAACC #### Fkbp2_ID1947_2 --> 0 - 2 Original Alignment GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTA-CCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGgg gtgggacaacctctcctgactgggtgttgcaactgtggcctctgctctagGGAAAGCTGGGAGATGGGACAGAGTTTGACAGCAGCCTACCCACAGAACCAGCCCTTTATCTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGTCTACTGgggtaggattggcatataatccaagttgcagtgagtgctacagtaaatgagt Alignment from CESAR GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTA-CCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGgg gtgggacaacctctcctgactgggtgttgcaactgtggcctctgctctagGGAAAGCTGGGAGATGGGACAGAGTTTGACAGCAGCCTACCCACAGAACCAGCCCTTTATCTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGTCTACTGgggtaggattggcatataatccaagttgcagtgagtgctacagtaaatgagt Alignment from Spaln_aa2Genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTA-CCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gtgggacaacctctcctgactgggtgttgcaactgtggcctctgctctagGGAAAGCTGGGAGATGGGACAGAGTTTGACAGCAGCCTAcCCACAGAACCAGCCCTTTATCTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGTCTACTGGGgtaggattggcatataatccaagttgcagtgagtgctacagtaaatgagt Alignment from Spaln_nt2Genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTA-CCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gtgggacaacctctcctgactgggtgttgcaactgtggcctctgctctagGGAAAGCTGGGAGATGGGACAGAGTTTGACAGCAGCCTACCCACAGAACCAGCCCTTTATCTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGTCTACTGGGgtaggattggcatataatccaagttgcagtgagtgctacagtaaatgagt Alignment from Pairagon GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTA-CCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gtgggacaacctctcctgactgggtgttgcaactgtggcctctgctctagGGAAAGCTGGGAGATGGGACAGAGTTTGACAGCAGCCTACCCACAGAACCAGCCCTTTATCTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGTCTACTGGGgtaggattggcatataatccaagttgcagtgagtgctacagtaaatgagt Alignment from Exonerate_protein2genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTA-CCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gtgggacaacctctcctgactgggtgttgcaactgtggcctctgctctagGGAAAGCTGGGAGATGGGACAGAGTTTGACAGCAGCCTACCCACAGAACCAGCCCTTTATCTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGTCTACTGGGgtaggattggcatataatccaagttgcagtgagtgctacagtaaatgagt Alignment from Exonerate_coding2genome GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGCCTA-CCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gtgggacaacctctcctgactgggtgttgcaactgtggcctctgctctagGGAAAGCTGGGAGATGGGACAGAGTTTGACAGCAGCCTACCCACAGAACCAGCCCTTTATCTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGTCTACTGGGgtaggattggcatataatccaagttgcagtgagtgctacagtaaatgagt Alignment from GeneWise GGAAAGCTAGAAGATGGGACGGAGTTTGACAGCAGC-CTACCACAGAACCAGCCCTTTGTTTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGGCTGCTGGG gtgggacaacctctcctgactgggtgttgcaactgtggcctctgctctagGGAAAGCTGGGAGATGGGACAGAGTTTGACAGCAGCCTACCCACAGAACCAGCCCTTTATCTTCTCCCTTGGCACTGGCCAGGTTATCAAGGGCTGGGACCAGGGTCTACTGGGgtaggattggcatataatccaagttgcagtgagtgctacagtaaatgagt #### Ganab_ID2469_8 --> 0 - 1 Original Alignment CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCA-GGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATg taccttgggagtggagggtgcgagtggggtccctgccttgtgtgttgcagCCAGAGGAGACCCAAGAAAAGGCTGAGAAGGATGAGCCACGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATggtaagaaattggcaggcctcaatagtaataatatatatttaatttggcag Alignment from CESAR CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCA-GGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATg taccttgggagtggagggtgcgagtggggtccctgccttgtgtgttgcagCCAGAGGAGACCCAAGAAAAGGCTGAGAAGGATGAGCCACGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATggtaagaaattggcaggcctcaatagtaacatttcctttctctggtcacag Alignment from Spaln_aa2Genome CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCA-GGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG taccttgggagtggagggtgcgagtggggtccctgccttgtgtgttgcagCCAGAGGAGACCCAAGAAAAGGCTGAGAAGGATGAGCCAcGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtaagaaattggcaggcctcaatagtaataatatatatttaatttggcag Alignment from Spaln_nt2Genome CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCA-GGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG taccttgggagtggagggtgcgagtggggtccctgccttgtgtgttgcagCCAGAGGAGACCCAAGAAAAGGCTGAGAAGGATGAGCCACGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtaagaaattggcaggcctcaatagtaataatatatatttaatttggcag Alignment from Pairagon CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCA-GGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG taccttgggagtggagggtgcgagtggggtccctgccttgtgtgttgcagCCAGAGGAGACCCAAGAAAAGGCTGAGAAGGATGAGCCACGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtaagaaattggcaggcctcaatagtaataatatatatttaatttggcag Alignment from Exonerate_protein2genome CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCA-GGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG taccttgggagtggagggtgcgagtggggtccctgccttgtgtgttgcagCCAGAGGAGACCCAAGAAAAGGCTGAGAAGGATGAGCCACGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtaagaaattggcaggcctcaatagtaataatatatatttaatttggcag Alignment from Exonerate_coding2genome CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCA-GGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG taccttgggagtggagggtgcgagtggggtccctgccttgtgtgttgcagCCAGAGGAGACCCAAGAAAAGGCTGAGAAGGATGAGCCACGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtaagaaattggcaggcctcaatagtaataatatatatttaatttggcag Alignment from GeneWise CCAGAGGAGACCCAGGAAAAGGCTGAGAAGGATGAGCCA-GGAGCCTGGGAGGAGACATTCAAAACACATTCTGACAGCAAGCCTTATG taccttgggagtggagggtgcgagtggggtccctgccttgtgtgttgcagCCAGAGGAGACCCAAGAAAAGGCTGAGAAGGATGAGCCACGGAGCCTGGGAGGAAACATTCAAAACACCTTCTGACAGCAAGCCTTATGgtaagaaattggcaggcctcaatagtaataatatatatttaatttggcag #### Ganab_ID2474_13 --> 0 - 1 Original Alignment CTGGTGGCCATTGTGGACCCC-CACATCAAGGTA------GACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAg gc ggagggccattgtaatctaaacaatttttcacttttgtgttcctttgtagCTAGTTGCTACTGTGGACCCACCATATCAAAGTTAAAGTAGACTCTGGCTACCGAGTTCATGACGAGTTGCAA---------------ATTAAGACTCGAGATGGCTCTGATTATGAGGGCTGGTGTTGGCCAggtatgatctgcggtcaatgaaattttgattataatgatttcttgacaggc Alignment from CESAR CTGGTGGCCATTGTGGACCCC-CACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAg gc ggagggccattgtaatctaaacaatttttcacttttgtgttcctttgtagCTAGTTGCTACTGTGGACCCACCATATCAAAGTTAAAGTAGACTCTGGCTACCGAGTTCATGACGAGTTGCAA---------------ATTAAGACTCGAGATGGCTCTGATTATGAGGGCTGGTGTTGGCCAggtatgatctgcggtcaatgaaattttgtctgtcctcctccacccacaggc Alignment from Spaln_aa2Genome CTGGTGGCCATTGTGGACCCC---CACATCAAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG GC ggagggccattgtaatctaaacaatttttcacttttgtgttcctttgtagctagTTGCTACTGTGGACCCACCATATCAAAGTTAAAGTAGACTCTGGCTACCGAGTTCATGACGAGTTGCAA---------------ATTAAGACTCGAGATGGCTCTGATTATGAGGGCTGGTGTTGGCCAGgtatgatctgcggtcaatgaaattttgattataatgatttcttgacagGC Alignment from Spaln_nt2Genome CTGGTGGCCATTGTGGACCC-CCACATCAAGGT------AGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG GC ggagggccattgtaatctaaacaatttttcacttttgtgttcctttgtagCTAGTTGCTACTGTGGACCCACCATATCAAAGTTAAAGTAGACTCTGGCTACCGAGTTCATGACGAGTTGCAAA---------------TTAAGACTCGAGATGGCTCTGATTATGAGGGCTGGTGTTGGCCAGgtatgatctgcggtcaatgaaattttgattataatgatttcttgacagGC Alignment from Pairagon CTGGTGGCCATTGTGGACCC-CCACATC------AAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG GC ggagggccattgtaatctaaacaatttttcacttttgtgttcctttgtagCTAGTTGCTACTGTGGACCCACCATATCAAAGTTAAAGTAGACTCTGGCTACCGAGTTCATGACGAGTTGCAAA---------------TTAAGACTCGAGATGGCTCTGATTATGAGGGCTGGTGTTGGCCAGgtatgatctgcggtcaatgaaattttgattataatgatttcttgacagGC Alignment from Exonerate_protein2genome CTGGTGGCCATTGTGGAC---CCCCAC----ATCAAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG GC ggagggccattgtaatctaaacaatttttcacttttgtgttcctttgtagCTAGTTGCTACTGTGGACCCACCATATCAAAGTTAAAGTAGACTCTGGCTACCGAGTTCATGACGAGTTGCAA---------------ATTAAGACTCGAGATGGCTCTGATTATGAGGGCTGGTGTTGGCCAGgtatgatctgcggtcaatgaaattttgattataatgatttcttgacagGC Alignment from Exonerate_coding2genome CTGGTGGCCATTGTGGAC---CCCCAC----ATCAAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG GC ggagggccattgtaatctaaacaatttttcacttttgtgttcctttgtagCTAGTTGCTACTGTGGACCCACCATATCAAAGTTAAAGTAGACTCTGGCTACCGAGTTCATGACGAGTTGCAA---------------ATTAAGACTCGAGATGGCTCTGATTATGAGGGCTGGTGTTGGCCAGgtatgatctgcggtcaatgaaattttgattataatgatttcttgacagGC Alignment from GeneWise ---CTGGTGGCCATTGTGGACCCCCACATCAAGGTAGACTCTGGCTACCGAGTTCACGAAGAATTGCGAAACCATGGGCTGTATGTTAAAACTCGGGATGGCTCTGATTACGAGGGCTGGTGCTGGCCAG GC ggagggccattgtaatctaaacaatttttcacttttgtgttcctttgtagctagTTGCTACTGTGGACCCACCATATCAAAGTTAAAGTAGACTCTGGCTACCGAGTTCATGACGAGTTGCAA---------------ATTAAGACTCGAGATGGCTCTGATTATGAGGGCTGGTGTTGGCCAGgtatgatctgcggtcaatgaaattttgattataatgatttcttgacagGC #### Ganab_ID2475_14 --> 2 - 0 Original Alignment Ag gcTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGG-TGGTCTAACATGTTCAGCTTTGACAATTATGAG AggtaggctctgcggtcaatgaaattttgtctgtcctcctccacccacaggcTCAGCTAGTTACCCTGACTACACTAATCCAAGGATGAGGGCCTGGCTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtatctaactggtagtggtaatcctcataattttgctgatcgtcaatgtc Alignment from CESAR Ag gcTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGG-TGGTCTAACATGTTCAGCTTTGACAATTATGAG AggtatgatctgcggtcaatgaaattttgtctgtcctcctccacccacaggcTCAGCTAGTTACCCTGACTACACTAATCCAAGGATGAGGGCCTGGCTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtatctaactggtagtggtaatcctcataattttgctgatcgtcaatgtc Alignment from Spaln_aa2Genome AG GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGG-TGGTCTAACATGTTCAGCTTTGACAATTATGAG AGgtaggctctgcggtcaatgaaattttgtctgtcctcctccacccacagGCTCAGCTAGTTACCCTGACTACACTAATCCAAGGATGAGGGCCTGGcTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtatctaactggtagtggtaatcctcataattttgctgatcgtcaatgtc Alignment from Spaln_nt2Genome AG GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGG-TGGTCTAACATGTTCAGCTTTGACAATTATGAG AGgtaggctctgcggtcaatgaaattttgtctgtcctcctccacccacagGCTCAGCTAGTTACCCTGACTACACTAATCCAAGGATGAGGGCCTGGCTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtatctaactggtagtggtaatcctcataattttgctgatcgtcaatgtc Alignment from Pairagon AG GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGG-TGGTCTAACATGTTCAGCTTTGACAATTATGAG AGgtaggctctgcggtcaatgaaattttgtctgtcctcctccacccacagGCTCAGCTAGTTACCCTGACTACACTAATCCAAGGATGAGGGCCTGGCTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtatctaactggtagtggtaatcctcataattttgctgatcgtcaatgtc Alignment from Exonerate_protein2genome AG GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGG-TGGTCTAACATGTTCAGCTTTGACAATTATGAG AGgtaggctctgcggtcaatgaaattttgtctgtcctcctccacccacagGCTCAGCTAGTTACCCTGACTACACTAATCCAAGGATGAGGGCCTGGCTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtatctaactggtagtggtaatcctcataattttgctgatcgtcaatgtc Alignment from Exonerate_coding2genome AG GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGG-TGGTCTAACATGTTCAGCTTTGACAATTATGAG AGgtaggctctgcggtcaatgaaattttgtctgtcctcctccacccacagGCTCAGCTAGTTACCCTGACTACACTAATCCAAGGATGAGGGCCTGGCTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtatctaactggtagtggtaatcctcataattttgctgatcgtcaatgtc Alignment from GeneWise AG GCTCAGCTAGTTACCCTGACTTCACTAATCCAAGGATGAGGGCCTGG-TGGTCTAACATGTTCAGCTTTGACAATTATGAG AGgtaggctctgcggtcaatgaaattttgtctgtcctcctccacccacagGCTCAGCTAGTTACCCTGACTACACTAATCCAAGGATGAGGGCCTGGCTGGTCTAACATGTTCAGCTTTGACAATTATGAGgtatctaactggtagtggtaatcctcataattttgctgatcgtcaatgtc #### Ganab_ID2477_16 --> 0 - 1 Original Alignment CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCA-GGCTCCCAGCGCTTTg accagaaggtagatagtatgtgttctttctttgttttgttttcttcttagCATATGGCAACCGCTGATGGGCTGATACAGTGTTCAGGGGGCATAGAGCGTTCGTTTGTGTTGAGTAGGGCTTTCTCCTCACGGTTTCCAGCGCTTTggtaagatgttgaaactagggccgtaactctagtcacctagcctggttaat Alignment from CESAR CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCA-GGCTCCCAGCGCTTTg accagaaggtagatagtatgtgttctttctttgttttgttttcttcttagCATATGGCAACCGCTGATGGGCTGATACAGTGTTCAGGGGGCATAGAGCGTTCGTTTGTGTTGAGTAGGGCTTTCTCCTCACGGTTTCCAGCGCTTTggtaagatgttgaaactagggccgtaactctagtcacctagcctggttaat Alignment from Spaln_aa2Genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCA-GGCTCCCAGCGCTTTG accagaaggtagatagtatgtgttctttctttgttttgttttcttcttagCATATGGCAACCGCTGATGGGCTGATACAGTGTTCAGGGGGCATAGAGCGTTCGTTTGTGTTGAGTAGGGCTTTCTCCTCAcGGTTTCCAGCGCTTTGgtaagatgttgaaactagggccgtaactctagtcacctagcctggttaat Alignment from Spaln_nt2Genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCA-GGCTCCCAGCGCTTTG accagaaggtagatagtatgtgttctttctttgttttgttttcttcttagCATATGGCAACCGCTGATGGGCTGATACAGTGTTCAGGGGGCATAGAGCGTTCGTTTGTGTTGAGTAGGGCTTTCTCCTCACGGTTTCCAGCGCTTTGgtaagatgttgaaactagggccgtaactctagtcacctagcctggttaat Alignment from Pairagon CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCA-GGCTCCCAGCGCTTTG accagaaggtagatagtatgtgttctttctttgttttgttttcttcttagCATATGGCAACCGCTGATGGGCTGATACAGTGTTCAGGGGGCATAGAGCGTTCGTTTGTGTTGAGTAGGGCTTTCTCCTCACGGTTTCCAGCGCTTTGgtaagatgttgaaactagggccgtaactctagtcacctagcctggttaat Alignment from Exonerate_protein2genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCA-GGCTCCCAGCGCTTTG accagaaggtagatagtatgtgttctttctttgttttgttttcttcttagCATATGGCAACCGCTGATGGGCTGATACAGTGTTCAGGGGGCATAGAGCGTTCGTTTGTGTTGAGTAGGGCTTTCTCCTCACGGTTTCCAGCGCTTTGgtaagatgttgaaactagggccgtaactctagtcacctagcctggttaat Alignment from Exonerate_coding2genome CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCA-GGCTCCCAGCGCTTTG accagaaggtagatagtatgtgttctttctttgttttgttttcttcttagCATATGGCAACCGCTGATGGGCTGATACAGTGTTCAGGGGGCATAGAGCGTTCGTTTGTGTTGAGTAGGGCTTTCTCCTCACGGTTTCCAGCGCTTTGgtaagatgttgaaactagggccgtaactctagtcacctagcctggttaat Alignment from GeneWise CACATGGCGACTGCTGATGGGCTAATACAGCGCTCTGGGGGCATAGAGCGTCCCTTTGTCCTGAGTAGGGCTTTCTTCTCA-- accagaaggtagatagtatgtgttctttctttgttttgttttcttcttagCATATGGCAACCGCTGATGGGCTGATACAGTGTTCAGGGGGCATAGAGCGTTCGTTTGTGTTGAGTAGGGCTTTCTCCTCACGgtttccagcgctttggtaagatgttgaaactagggccgtaactctagtcacctagcctggttaat #### Ganab_ID2478_17 --> 2 - 1 Original Alignment gaGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCT-ATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAg tactgttttgtgggtaatcaggacaatcgcctatgcatcatcattcccaggaGCTGTGTGGACAGGGGACAACACTGCTGAATGGGATCATTTGAAGATCTCTCATCCATATGTGTCTCAGCTTGGCATTGGTGGGGCTTTCCTTCTGTGGAggtaggagaagtaaacatttggggtcttgcattggatgtttgtggtgggga Alignment from CESAR gaGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCT-ATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAg tactgttttgtgggtaatcaggacaatcgcctatgcatcatcattcccaggaGCTGTGTGGACAGGGGACAACACTGCTGAATGGGATCATTTGAAGATCTCTCATCCATATGTGTCTCAGCTTGGCATTGGTGGGGCTTTCCTTCTGTGGAggtaggagaagtaaacatttggggtcttgcattggatgtttgtggtgggga Alignment from Spaln_aa2Genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCT-ATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG tactgttttgtgggtaatcaggacaatcgcctatgcatcatcattcccagGAGCTGTGTGGACAGGGGACAACACTGCTGAATGGGATCATTTGAAGATCTCTCATCCAtATGTGTCTCAGCTTGGCATTGGTGGGGCTTTCCTTCTGTGGAGgtaggagaagtaaacatttggggtcttgcattggatgtttgtggtgggga Alignment from Spaln_nt2Genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCT-ATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG tactgttttgtgggtaatcaggacaatcgcctatgcatcatcattcccagGAGCTGTGTGGACAGGGGACAACACTGCTGAATGGGATCATTTGAAGATCTCTCATCCATATGTGTCTCAGCTTGGCATTGGTGGGGCTTTCCTTCTGTGGAGgtaggagaagtaaacatttggggtcttgcattggatgtttgtggtgggga Alignment from Pairagon GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCT-ATCCCTATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG tactgttttgtgggtaatcaggacaatcgcctatgcatcatcattcccagGAGCTGTGTGGACAGGGGACAACACTGCTGAATGGGATCATTTGAAGATCTCTCATCCATATGTGTCTCAGCTTGGCATTGGTGGGGCTTTCCTTCTGTGGAGgtaggagaagtaaacatttggggtcttgcattggatgtttgtggtgggga Alignment from Exonerate_protein2genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCT-ATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG tactgttttgtgggtaatcaggacaatcgcctatgcatcatcattcccagGAGCTGTGTGGACAGGGGACAACACTGCTGAATGGGATCATTTGAAGATCTCTCATCCATATGTGTCTCAGCTTGGCATTGGTGGGGCTTTCCTTCTGTGGAGgtaggagaagtaaacatttggggtcttgcattggatgtttgtggtgggga Alignment from Exonerate_coding2genome GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCT-ATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG tactgttttgtgggtaatcaggacaatcgcctatgcatcatcattcccagGAGCTGTGTGGACAGGGGACAACACTGCTGAATGGGATCATTTGAAGATCTCTCATCCATATGTGTCTCAGCTTGGCATTGGTGGGGCTTTCCTTCTGTGGAGgtaggagaagtaaacatttggggtcttgcattggatgtttgtggtgggga Alignment from GeneWise GAGCTGTGTGGACAGGGGACAACACTGCCGAATGGGATCATTTGAAGATCTCTATCCCT-ATGTGTCTCAGCCTGGCACTGGTGGGGCTTTCCTTCTGTGGAG tactgttttgtgggtaatcaggacaatcgcctatgcatcatcattcccagGAGCTGTGTGGACAGGGGACAACACTGCTGAATGGGATCATTTGAAGATCTCTCATCCATATGTGTCTCAGCTTGGCATTGGTGGGGCTTTCCTTCTGTGGAGgtaggagaagtaaacatttggggtcttgcattggatgtttgtggtgggga #### Ganab_ID2481_20 --> 2 - 0 Original Alignment gtGATGCACTCCTTATTCACCCTGTA-TCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggttgcataagtgtgtacaaaattatatttaaaaccttttcccattgaaggtGACACACTCCTTATTCATCCTGTACTCAGATGCTGGGGCCCATGGAGTGCAGGTCTATTTGCCCGGCCAAGAAGAAgtaagccgccaaatagcacagcccaagggacccaaaagggcaaaaacata Alignment from CESAR gtGATGCACTCCTTATTCACCCTGTA-TCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggttgcataagtgtgtacaaaattatatttaaaaccttttcccattgaaggtGACACACTCCTTATTCATCCTGTACTCAGATGCTGGGGCCCATGGAGTGCAGGTCTATTTGCCCGGCCAAGAAGAAgtaagccgccaaatagcacagcccaagggacccaaaagggcaaaaacata Alignment from Spaln_aa2Genome GTGATGCACTCCTTATTCACCCTGTA-TCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggttgcataagtgtgtacaaaattatatttaaaaccttttcccattgaagGTGACACACTCCTTATTCATCCTGTAcTCAGATGCTGGGGCCCATGGAGTGCAGGTCTATTTGCCCGGCCAAGAAGAAgtaagccgccaaatagcacagcccaagggacccaaaagggcaaaaacata Alignment from Spaln_nt2Genome GTGATGCACTCCTTATTCACCCTGTA-TCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggttgcataagtgtgtacaaaattatatttaaaaccttttcccattgaagGTGACACACTCCTTATTCATCCTGTACTCAGATGCTGGGGCCCATGGAGTGCAGGTCTATTTGCCCGGCCAAGAAGAAgtaagccgccaaatagcacagcccaagggacccaaaagggcaaaaacata Alignment from Pairagon GTGATGCACTCCTTATTCACCCTGTA-TCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggttgcataagtgtgtacaaaattatatttaaaaccttttcccattgaagGTGACACACTCCTTATTCATCCTGTACTCAGATGCTGGGGCCCATGGAGTGCAGGTCTATTTGCCCGGCCAAGAAGAAgtaagccgccaaatagcacagcccaagggacccaaaagggcaaaaacata Alignment from Exonerate_protein2genome GTGATGCACTCCTTATTCACCCTGTA-TCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggttgcataagtgtgtacaaaattatatttaaaaccttttcccattgaagGTGACACACTCCTTATTCATCCTGTACTCAGATGCTGGGGCCCATGGAGTGCAGGTCTATTTGCCCGGCCAAGAAGAAgtaagccgccaaatagcacagcccaagggacccaaaagggcaaaaacata Alignment from Exonerate_coding2genome GTGATGCACTCCTTATTCACCCTGTA-TCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggttgcataagtgtgtacaaaattatatttaaaaccttttcccattgaagGTGACACACTCCTTATTCATCCTGTACTCAGATGCTGGGGCCCATGGAGTGCAGGTCTATTTGCCCGGCCAAGAAGAAgtaagccgccaaatagcacagcccaagggacccaaaagggcaaaaacata Alignment from GeneWise GTGATGCACTCCTTATTCACCCTGTA-TCGGATGCTGGGGCCCACGGAGTGCAGGTCTATTTGCCTGGCCAAGAAGAA ggttgcataagtgtgtacaaaattatatttaaaaccttttcccattgaagGTGACACACTCCTTATTCATCCTGTACTCAGATGCTGGGGCCCATGGAGTGCAGGTCTATTTGCCCGGCCAAGAAGAAgtaagccgccaaatagcacagcccaagggacccaaaagggcaaaaacata #### Ganab_ID2483_22 --> 0 - 0 Original Alignment ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCT-TCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcaaggcatgaaaggaatgaagtcacctttgtactgtctcttcctggcagATCCCTGTGTTCCAGCGTGGTGGAACCATTGTGCCTCGATGGATGCGTGTCAGGCGCCCTCTCAGACTGTATGAAGGATGATCCTATCACTCTTTTCGTTGCTCTCAGTCCCCAGgtgagtatccaatcaccagggctggcttaattatagactcattttaaatg Alignment from CESAR ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCT-TCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcaaggcatgaaaggaatgaagtcacctttgtactgtctcttcctggcagATCCCTGTGTTCCAGCGTGGTGGAACCATTGTGCCTCGATGGATGCGTGTCAGGCGCCCTCTCAGACTGTATGAAGGATGATCCTATCACTCTTTTCGTTGCTCTCAGTCCCCAGgtgagtatccaatcaccagggctggcttaattatagactcattttaaatg Alignment from Spaln_aa2Genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCT-TCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcaaggcatgaaaggaatgaagtcacctttgtactgtctcttcctggcagATCCCTGTGTTCCAGCGTGGTGGAACCATTGTGCCTCGATGGATGCGTGTCAGGCGCCCTcTCAGACTGTATGAAGGATGATCCTATCACTCTTTTCGTTGCTCTCAGTCCCCAGgtgagtatccaatcaccagggctggcttaattatagactcattttaaatg Alignment from Spaln_nt2Genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCT-TCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcaaggcatgaaaggaatgaagtcacctttgtactgtctcttcctggcagATCCCTGTGTTCCAGCGTGGTGGAACCATTGTGCCTCGATGGATGCGTGTCAGGCGCCCTCTCAGACTGTATGAAGGATGATCCTATCACTCTTTTCGTTGCTCTCAGTCCCCAGgtgagtatccaatcaccagggctggcttaattatagactcattttaaatg Alignment from Pairagon ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCT-TCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcaaggcatgaaaggaatgaagtcacctttgtactgtctcttcctggcagATCCCTGTGTTCCAGCGTGGTGGAACCATTGTGCCTCGATGGATGCGTGTCAGGCGCCCTCTCAGACTGTATGAAGGATGATCCTATCACTCTTTTCGTTGCTCTCAGTCCCCAGgtgagtatccaatcaccagggctggcttaattatagactcattttaaatg Alignment from Exonerate_protein2genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCT-TCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcaaggcatgaaaggaatgaagtcacctttgtactgtctcttcctggcagATCCCTGTGTTCCAGCGTGGTGGAACCATTGTGCCTCGATGGATGCGTGTCAGGCGCCCTCTCAGACTGTATGAAGGATGATCCTATCACTCTTTTCGTTGCTCTCAGTCCCCAGgtgagtatccaatcaccagggctggcttaattatagactcattttaaatg Alignment from Exonerate_coding2genome ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGCTCT-TCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcaaggcatgaaaggaatgaagtcacctttgtactgtctcttcctggcagATCCCTGTGTTCCAGCGTGGTGGAACCATTGTGCCTCGATGGATGCGTGTCAGGCGCCCTCTCAGACTGTATGAAGGATGATCCTATCACTCTTTTCGTTGCTCTCAGTCCCCAGgtgagtatccaatcaccagggctggcttaattatagactcattttaaatg Alignment from GeneWise ATCCCCGTGTTCCAGCGTGGCGGAACCATTGTGCCTCGATGGATGCGTGTGAGGCGC-TCTTCAGACTGTATGAAGGACGATCCTATCACTCTCTTTGTTGCTCTCAGTCCCCAG gcaaggcatgaaaggaatgaagtcacctttgtactgtctcttcctggcagATCCCTGTGTTCCAGCGTGGTGGAACCATTGTGCCTCGATGGATGCGTGTCAGGCGCCCTCTCAGACTGTATGAAGGATGATCCTATCACTCTTTTCGTTGCTCTCAGTCCCCAGgtgagtatccaatcaccagggctggcttaattatagactcattttaaatg #### Ganab_ID2485_24 --> 1 - 1 Original Alignment tTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTA-GTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAg gccctgcctccagggttttgctgtgtgtcatgtctgctccctctgaccagcCTAGCAGACCCTAAGGGCCACCAGGAGACACCTATCTGGGTGGAGCGAGTACGTCATAATGGGGGCTGGGAAGCCAGCTGCTGTGGTGCACCAGACAAAGggtacgcaaagatgcagtaatgaatcgatagaaaaagcagtagagataacc Alignment from CESAR tTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTA-GTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAg gccctgcctccagggttttgctgtgtgtcatgtctgctccctctgaccagcCTAGCAGACCCTAAGGGCCACCAGGAGACACCTATCTGGGTGGAGCGAGTACGTCATAATGGGGGCTGGGAAGCCAGCTGCTGTGGTGCACCAGACAAAGggtacgcaaagatgcagtaatgaatcgatagaaaaagcagtagagataacc Alignment from Spaln_aa2Genome TTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTA-GTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAG gccctgcctccagggttttgctgtgtgtcatgtctgctccctctgaccagCCTAGCAGACCCTAAGGGCCACCAGGAGACACCTATCTGGGTGGAGCGAGTAcGTCATAATGGGGGCTGGGAAGCCAGCTGCTGTGGTGCACCAGACAAAGGgtacgcaaagatgcagtaatgaatcgatagaaaaagcagtagagataacc Alignment from Spaln_nt2Genome TTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTA-GTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAG gccctgcctccagggttttgctgtgtgtcatgtctgctccctctgaccagCCTAGCAGACCCTAAGGGCCACCAGGAGACACCTATCTGGGTGGAGCGAGTACGTCATAATGGGGGCTGGGAAGCCAGCTGCTGTGGTGCACCAGACAAAGGgtacgcaaagatgcagtaatgaatcgatagaaaaagcagtagagataacc Alignment from Pairagon TTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTA-GTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAG gccctgcctccagggttttgctgtgtgtcatgtctgctccctctgaccagCCTAGCAGACCCTAAGGGCCACCAGGAGACACCTATCTGGGTGGAGCGAGTACGTCATAATGGGGGCTGGGAAGCCAGCTGCTGTGGTGCACCAGACAAAGGgtacgcaaagatgcagtaatgaatcgatagaaaaagcagtagagataacc Alignment from Exonerate_protein2genome TTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTA-GTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAG gccctgcctccagggttttgctgtgtgtcatgtctgctccctctgaccagCCTAGCAGACCCTAAGGGCCACCAGGAGACACCTATCTGGGTGGAGCGAGTACGTCATAATGGGGGCTGGGAAGCCAGCTGCTGTGGTGCACCAGACAAAGGgtacgcaaagatgcagtaatgaatcgatagaaaaagcagtagagataacc Alignment from Exonerate_coding2genome TTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGAGTA-GTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAG gccctgcctccagggttttgctgtgtgtcatgtctgctccctctgaccagCCTAGCAGACCCTAAGGGCCACCAGGAGACACCTATCTGGGTGGAGCGAGTACGTCATAATGGGGGCTGGGAAGCCAGCTGCTGTGGTGCACCAGACAAAGGgtacgcaaagatgcagtaatgaatcgatagaaaaagcagtagagataacc Alignment from GeneWise TTCAGCAGACCCCAAAGGCCACCTTGAGACACCTATTTGGATTGAGCGA-GTAGTCATCATGGGGGCTGGAAAGCCAGCAGCTGTGGTGCTCCAGACCAAAG gccctgcctccagggttttgctgtgtgtcatgtctgctccctctgaccagCCTAGCAGACCCTAAGGGCCACCAGGAGACACCTATCTGGGTGGAGCGAGTACGTCATAATGGGGGCTGGGAAGCCAGCTGCTGTGGTGCACCAGACAAAGGgtacgcaaagatgcagtaatgaatcgatagaaaaagcagtagagataacc #### Gbf1_ID9795_14 --> 0 - 1 Original Alignment AATGCCTTTCCTGTGTCTGGT-CAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGt acagtataccactggctgtgtcacataggttctgtgtctcctttgggcagAATGCCTTTCCTGTATCTGGTCCAGCTCCATACTACACACCTTCTGTCCCTTGATGCTCTTTTGACTTTTATTGACAGTACTGAGTTTCATTCTCAGGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACACCTAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGtgtgggtaatcttattatgttattattactattcttttatgtccatgctct Alignment from CESAR AATGCCTTTCCTGTGTCTGGT-CAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGt acagtataccactggctgtgtcacataggttctgtgtctcctttgggcagAATGCCTTTCCTGTATCTGGTCCAGCTCCATACTACACACCTTCTGTCCCTTGATGCTCTTTTGACTTTTATTGACAGTACTGAGTTTCATTCTCAGGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACACCTAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGtgtgggtaatcttattatgttattattactattcttttatgtccatgctct Alignment from Spaln_aa2Genome AATGCCTTTCCTGTGTCTGGT-CAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT acagtataccactggctgtgtcacataggttctgtgtctcctttgggcagAATGCCTTTCCTGTATCTGGTcCAGCTCCATACTACACACCTTCTGTCCCTTGATGCTCTTTTGACTTTTATTGACAGTACTGAGTTTCATTCTCAGGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACACCTAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGTgtgggtaatcttattatgttattattactattcttttatgtccatgctct Alignment from Spaln_nt2Genome AATGCCTTTCCTGTGTCTGGT-CAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT acagtataccactggctgtgtcacataggttctgtgtctcctttgggcagAATGCCTTTCCTGTATCTGGTCCAGCTCCATACTACACACCTTCTGTCCCTTGATGCTCTTTTGACTTTTATTGACAGTACTGAGTTTCATTCTCAGGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACACCTAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGTgtgggtaatcttattatgttattattactattcttttatgtccatgctct Alignment from Pairagon AATGCCTTTCCTGTGTCTGGT-CAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT acagtataccactggctgtgtcacataggttctgtgtctcctttgggcagAATGCCTTTCCTGTATCTGGTCCAGCTCCATACTACACACCTTCTGTCCCTTGATGCTCTTTTGACTTTTATTGACAGTACTGAGTTTCATTCTCAGGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACACCTAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGTgtgggtaatcttattatgttattattactattcttttatgtccatgctct Alignment from Exonerate_protein2genome AATGCCTTTCCTGTGTCTGGT-CAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT acagtataccactggctgtgtcacataggttctgtgtctcctttgggcagAATGCCTTTCCTGTATCTGGTCCAGCTCCATACTACACACCTTCTGTCCCTTGATGCTCTTTTGACTTTTATTGACAGTACTGAGTTTCATTCTCAGGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACACCTAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGTgtgggtaatcttattatgttattattactattcttttatgtccatgctct Alignment from Exonerate_coding2genome AATGCCTTTCCTGTGTCTGGT-CAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT acagtataccactggctgtgtcacataggttctgtgtctcctttgggcagAATGCCTTTCCTGTATCTGGTCCAGCTCCATACTACACACCTTCTGTCCCTTGATGCTCTTTTGACTTTTATTGACAGTACTGAGTTTCATTCTCAGGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACACCTAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGTgtgggtaatcttattatgttattattactattcttttatgtccatgctct Alignment from GeneWise AATGCCTTTCCTGTGTCTGGT-CAGCTTTATACAACACACCTGCTGTCTCTTGATGCCCTTTTGACAGTTATTGACAGCACTGAGTCTCATTGTCAGGCCAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGT acagtataccactggctgtgtcacataggttctgtgtctcctttgggcagAATGCCTTTCCTGTATCTGGTCCAGCTCCATACTACACACCTTCTGTCCCTTGATGCTCTTTTGACTTTTATTGACAGTACTGAGTTTCATTCTCAGGCCAAAGTTCTCAATGCCCTCAACCAGCAAGAGAAAAAGGAAACACCTAGGCCTGGTTTTGAAGCAGTTGAT---AACCCAGATGCTAACAAGTgtgggtaatcttattatgttattattactattcttttatgtccatgctct #### Gbf1_ID9797_16 --> 2 - 0 Original Alignment ctGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTT-CTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG ggatcctttatgttgcgcattgtgtttttaccaacccctttccaccccagcaGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatacatatcttacctggttggccgtctctaaac Alignment from CESAR ctGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTT-CTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG ggatcctttatgttgcgcattgtgtttttaccaacccctttccaccccagcaGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatacatatcttacctggttggccgtctctaaac Alignment from Spaln_aa2Genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTT-CTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG ggatcctttatgttgcgcattgtgtttttaccaacccctttccaccccagCAGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCcCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatacatatcttacctggttggccgtctctaaac Alignment from Spaln_nt2Genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTTC-TGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG ggatcctttatgttgcgcattgtgtttttaccaacccctttccaccccagCAGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatacatatcttacctggttggccgtctctaaac Alignment from Pairagon CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCT-TCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG ggatcctttatgttgcgcattgtgtttttaccaacccctttccaccccagCAGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatacatatcttacctggttggccgtctctaaac Alignment from Exonerate_protein2genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTT-CTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG ggatcctttatgttgcgcattgtgtttttaccaacccctttccaccccagCAGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatacatatcttacctggttggccgtctctaaac Alignment from Exonerate_coding2genome CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTT-CTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG ggatcctttatgttgcgcattgtgtttttaccaacccctttccaccccagCAGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatacatatcttacctggttggccgtctctaaac Alignment from GeneWise CTGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGT-CTTCTGCCAGATCCACGGGAACTAATTGAAATTAAAAACAAAAAAAAG ggatcctttatgttgcgcattgtgtttttaccaacccctttccaccccagCAGACAAAAAGTTCACCAGGAAGCCACCTCGATTTTCCTGTCTCCCTGCCAGATCCATGGGAATTAATTGAAATTAAAAACAAAAAAAAGgtgagtgtagtgaatccatacatatcttacctggttggccgtctctaaac #### Gbf1_ID9803_22 --> 1 - 0 Original Alignment gAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCT-CTGTGCAAATTCACAGCTCTAAGTAGTGAG ggcctggtgaatgttcaccaggtgtttcttgatttgtcttctctttttaggAAGTGTGCCACGATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtaaggtggaacaagaaaactagtcggaggccaatgatcctcttcctccc Alignment from CESAR gAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCT-CTGTGCAAATTCACAGCTCTAAGTAGTGAG ggcctggtgaatgttcaccaggtgtttcttgatttgtcttctctttttaggAAGTGTGCCACGATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtaaggtggaacaagaaaactagtcggaggccaatgatcctcttcctccc Alignment from Spaln_aa2Genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCT-CTGTGCAAATTCACAGCTCTAAGTAGTGAG ggcctggtgaatgttcaccaggtgtttcttgatttgtcttctctttttagGAAGTGTGCCACGATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCcCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtaaggtggaacaagaaaactagtcggaggccaatgatcctcttcctccc Alignment from Spaln_nt2Genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTC-TGTGCAAATTCACAGCTCTAAGTAGTGAG ggcctggtgaatgttcaccaggtgtttcttgatttgtcttctctttttagGAAGTGTGCCACGATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtaaggtggaacaagaaaactagtcggaggccaatgatcctcttcctccc Alignment from Pairagon GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCT-CTCTGTGCAAATTCACAGCTCTAAGTAGTGAG ggcctggtgaatgttcaccaggtgtttcttgatttgtcttctctttttagGAAGTGTGCCACGATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtaaggtggaacaagaaaactagtcggaggccaatgatcctcttcctccc Alignment from Exonerate_protein2genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCT-CTGTGCAAATTCACAGCTCTAAGTAGTGAG ggcctggtgaatgttcaccaggtgtttcttgatttgtcttctctttttagGAAGTGTGCCACGATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtaaggtggaacaagaaaactagtcggaggccaatgatcctcttcctccc Alignment from Exonerate_coding2genome GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCT-CTGTGCAAATTCACAGCTCTAAGTAGTGAG ggcctggtgaatgttcaccaggtgtttcttgatttgtcttctctttttagGAAGTGTGCCACGATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtaaggtggaacaagaaaactagtcggaggccaatgatcctcttcctccc Alignment from GeneWise GAAGTGTGCCATGATCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACAATCTCATCATC-TCTCTGTGCAAATTCACAGCTCTAAGTAGTGAG ggcctggtgaatgttcaccaggtgtttcttgatttgtcttctctttttagGAAGTGTGCCACGATCTCTGCCCACTATGGCCTCAGTGATGTCTTTGACAATCTGATCATTTCCCCTGTGCAAATTCACAGCTCTAAGTAGTGAGgtaaggtggaacaagaaaactagtcggaggccaatgatcctcttcctccc #### Gbf1_ID9807_26 --> 0 - 0 Original Alignment CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTG-CAGGAGCTCATGAAG cttgccctgaactttcttcttttatcattggttttgtttttcttttctagCAGTGTGACCCAGAAAAGATGATCACGGAAAGCAAGTTCCTCCAGCTGGAATCACTGCCAGGAACTCATGAAGgtaagttgtgaacagaacttggaaagacagaatcttactggtgcagcgca Alignment from CESAR CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTG-CAGGAGCTCATGAAG cttgccctgaactttcttcttttatcattggttttgtttttcttttctagCAGTGTGACCCAGAAAAGATGATCACGGAAAGCAAGTTCCTCCAGCTGGAATCACTGCCAGGAACTCATGAAGgtaagttgtgaacagaacttggaaagacagaatcttactggtgcagcgca Alignment from Spaln_aa2Genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTG-CAGGAGCTCATGAAG cttgccctgaactttcttcttttatcattggttttgtttttcttttctagCAGTGTGACCCAGAAAAGATGATCACGGAAAGCAAGTTCCTCCAGCTGGAATCACTGcCAGGAACTCATGAAGgtaagttgtgaacagaacttggaaagacagaatcttactggtgcagcgca Alignment from Spaln_nt2Genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGC-AGGAGCTCATGAAG cttgccctgaactttcttcttttatcattggttttgtttttcttttctagCAGTGTGACCCAGAAAAGATGATCACGGAAAGCAAGTTCCTCCAGCTGGAATCACTGCCAGGAACTCATGAAGgtaagttgtgaacagaacttggaaagacagaatcttactggtgcagcgca Alignment from Pairagon CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTG-CAGGAGCTCATGAAG cttgccctgaactttcttcttttatcattggttttgtttttcttttctagCAGTGTGACCCAGAAAAGATGATCACGGAAAGCAAGTTCCTCCAGCTGGAATCACTGCCAGGAACTCATGAAGgtaagttgtgaacagaacttggaaagacagaatcttactggtgcagcgca Alignment from Exonerate_protein2genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTG-CAGGAGCTCATGAAG cttgccctgaactttcttcttttatcattggttttgtttttcttttctagCAGTGTGACCCAGAAAAGATGATCACGGAAAGCAAGTTCCTCCAGCTGGAATCACTGCCAGGAACTCATGAAGgtaagttgtgaacagaacttggaaagacagaatcttactggtgcagcgca Alignment from Exonerate_coding2genome CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCACTG-CAGGAGCTCATGAAG cttgccctgaactttcttcttttatcattggttttgtttttcttttctagCAGTGTGACCCAGAAAAGATGATCACGGAAAGCAAGTTCCTCCAGCTGGAATCACTGCCAGGAACTCATGAAGgtaagttgtgaacagaacttggaaagacagaatcttactggtgcagcgca Alignment from GeneWise CAATGTGACCCAGAAAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGAATCA-CTGCAGGAGCTCATGAAG cttgccctgaactttcttcttttatcattggttttgtttttcttttctagCAGTGTGACCCAGAAAAGATGATCACGGAAAGCAAGTTCCTCCAGCTGGAATCACTGCCAGGAACTCATGAAGgtaagttgtgaacagaacttggaaagacagaatcttactggtgcagcgca #### Gbf1_ID9808_27 --> 0 - 2 Original Alignment GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTG-CTAAGGATCGTGTTAGAGAACag gagagtgctggaatcctaactccttacttccctgttactttcttctctagGCTCTGGTCTCAGTAACCCCAGATGAAGAGACATATGATGAAGAAGATGCCGCTTTTTGTCTTGAAATGCTGCCTAAGGATTGTGCTAGAGAACaggtgagttaagttaggcctgcagaacccagaaggtcctatactgggttacc Alignment from CESAR GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTG-CTAAGGATCGTGTTAGAGAACag gagagtgctggaatcctaactccttacttccctgttactttcttctctagGCTCTGGTCTCAGTAACCCCAGATGAAGAGACATATGATGAAGAAGATGCCGCTTTTTGTCTTGAAATGCTGCCTAAGGATTGTGCTAGAGAACaggtgagttaagttaggcctgcagaacccagaaggtcctatactgggttacc Alignment from Spaln_aa2Genome GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTG-CTAAGGATCGTGTTAGAGAACAG gagagtgctggaatcctaactccttacttccctgttactttcttctctagGCTCTGGTCTCAGTAACCCCAGATGAAGAGACATATGATGAAGAAGATGCCGCTTTTTGTCTTGAAATGCTGcCTAAGGATTGTGCTAGAGAACAGgtgagttaagttaggcctgcagaacccagaaggtcctatactgggttacc Alignment from Spaln_nt2Genome GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTG-CTAAGGATCGTGTTAGAGAACAG gagagtgctggaatcctaactccttacttccctgttactttcttctctagGCTCTGGTCTCAGTAACCCCAGATGAAGAGACATATGATGAAGAAGATGCCGCTTTTTGTCTTGAAATGCTGCCTAAGGATTGTGCTAGAGAACAGgtgagttaagttaggcctgcagaacccagaaggtcctatactgggttacc Alignment from Pairagon GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTG-CTAAGGATCGTGTTAGAGAACAG gagagtgctggaatcctaactccttacttccctgttactttcttctctagGCTCTGGTCTCAGTAACCCCAGATGAAGAGACATATGATGAAGAAGATGCCGCTTTTTGTCTTGAAATGCTGCCTAAGGATTGTGCTAGAGAACAGgtgagttaagttaggcctgcagaacccagaaggtcctatactgggttacc Alignment from Exonerate_protein2genome GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTG-CTAAGGATCGTGTTAGAGAACAG gagagtgctggaatcctaactccttacttccctgttactttcttctctagGCTCTGGTCTCAGTAACCCCAGATGAAGAGACATATGATGAAGAAGATGCCGCTTTTTGTCTTGAAATGCTGCCTAAGGATTGTGCTAGAGAACAGgtgagttaagttaggcctgcagaacccagaaggtcctatactgggttacc Alignment from Exonerate_coding2genome GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATGCTG-CTAAGGATCGTGTTAGAGAACAG gagagtgctggaatcctaactccttacttccctgttactttcttctctagGCTCTGGTCTCAGTAACCCCAGATGAAGAGACATATGATGAAGAAGATGCCGCTTTTTGTCTTGAAATGCTGCCTAAGGATTGTGCTAGAGAACAGgtgagttaagttaggcctgcagaacccagaaggtcctatactgggttacc Alignment from GeneWise GCTCTGGTCTCAGTGACACCAGATGAAGAGACATATGACGAAGAAGATGCTGCTTTCTGTCTAGAGATG-CTGCTAAGGATCGTGTTAGAGAACAG gagagtgctggaatcctaactccttacttccctgttactttcttctctagGCTCTGGTCTCAGTAACCCCAGATGAAGAGACATATGATGAAGAAGATGCCGCTTTTTGTCTTGAAATGCTGCCTAAGGATTGTGCTAGAGAACAGgtgagttaagttaggcctgcagaacccagaaggtcctatactgggttacc #### Gbf1_ID9812_31 --> 0 - 1 Original Alignment GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCT-GCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTg gcatctagtctggaaaatgggcactagccttttgtgtctgcttcttccagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGGGCAGGGCTCAGTAGGCCAGGCACTTCACCCCTAGTCAACCAGTATAGCCTCACAGTAGGCCTGGATCTGGGCCCACATGACACTAAGTCCCTACTTAAGTGTGTAGAATCTCTGTCCTTCATTGTTCGAGATGCTCGCCCACATCACACCTGATAACTTTGAACTGGGTGTCAAGACCCTCTGTATCTTTGTAGAAGCCAGTCTGAACGACggtaagctctcttgagaaatcgggagtgggtcatgagcgatgaagaggagt Alignment from CESAR GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCT-GCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTg gcatctagtctggaaaatgggcactagccttttgtgtctgcttcttccagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGGGCAGGGCTCAGTAGGCCAGGCACTTCACCCCTAGTCAACCAGTATAGCCTCACAGTAGGCCTGGATCTGGGCCCACATGACACTAAGTCCCTACTTAAGTGTGTAGAATCTCTGTCCTTCATTGTTCGAGATGCTCGCCCACATCACACCTGATAACTTTGAACTGGGTGTCAAGACCCTCTGTATCTTTGTAGAAGCCAGTCTGAACGACggtaagctctcttgagaaatcgggagtgggtcatgagcgatgaagaggagt Alignment from Spaln_aa2Genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCT-GCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG gcatctagtctggaaaatgggcactagccttttgtgtctgcttcttccagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGGGCAGGGCTCAGTAGGCCAGGCACTTCACCCCTAGTCAACCAGTATAGCCTCACAGTAGGCCTGGATCTGGGCCCACATGACACTAAGTCCCTACTTAAGTGTGTAGAATCTCTGTCCTTCATTGTTCGAGATGCTcGCCCACATCACACCTGATAACTTTGAACTGGGTGTCAAGACCCTCTGTATCTTTGTAGAAGCCAGTCTGAACGACGgtaagctctcttgagaaatcgggagtgggtcatgagcgatgaagaggagt Alignment from Spaln_nt2Genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCT-GCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG gcatctagtctggaaaatgggcactagccttttgtgtctgcttcttccagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGGGCAGGGCTCAGTAGGCCAGGCACTTCACCCCTAGTCAACCAGTATAGCCTCACAGTAGGCCTGGATCTGGGCCCACATGACACTAAGTCCCTACTTAAGTGTGTAGAATCTCTGTCCTTCATTGTTCGAGATGCTCGCCCACATCACACCTGATAACTTTGAACTGGGTGTCAAGACCCTCTGTATCTTTGTAGAAGCCAGTCTGAACGACGgtaagctctcttgagaaatcgggagtgggtcatgagcgatgaagaggagt Alignment from Pairagon GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCT-GCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG gcatctagtctggaaaatgggcactagccttttgtgtctgcttcttccagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGGGCAGGGCTCAGTAGGCCAGGCACTTCACCCCTAGTCAACCAGTATAGCCTCACAGTAGGCCTGGATCTGGGCCCACATGACACTAAGTCCCTACTTAAGTGTGTAGAATCTCTGTCCTTCATTGTTCGAGATGCTCGCCCACATCACACCTGATAACTTTGAACTGGGTGTCAAGACCCTCTGTATCTTTGTAGAAGCCAGTCTGAACGACGgtaagctctcttgagaaatcgggagtgggtcatgagcgatgaagaggagt Alignment from Exonerate_protein2genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCT-GCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG gcatctagtctggaaaatgggcactagccttttgtgtctgcttcttccagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGGGCAGGGCTCAGTAGGCCAGGCACTTCACCCCTAGTCAACCAGTATAGCCTCACAGTAGGCCTGGATCTGGGCCCACATGACACTAAGTCCCTACTTAAGTGTGTAGAATCTCTGTCCTTCATTGTTCGAGATGCTCGCCCACATCACACCTGATAACTTTGAACTGGGTGTCAAGACCCTCTGTATCTTTGTAGAAGCCAGTCTGAACGACGgtaagctctcttgagaaatcgggagtgggtcatgagcgatgaagaggagt Alignment from Exonerate_coding2genome GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCT-GCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG gcatctagtctggaaaatgggcactagccttttgtgtctgcttcttccagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGGGCAGGGCTCAGTAGGCCAGGCACTTCACCCCTAGTCAACCAGTATAGCCTCACAGTAGGCCTGGATCTGGGCCCACATGACACTAAGTCCCTACTTAAGTGTGTAGAATCTCTGTCCTTCATTGTTCGAGATGCTCGCCCACATCACACCTGATAACTTTGAACTGGGTGTCAAGACCCTCTGTATCTTTGTAGAAGCCAGTCTGAACGACGgtaagctctcttgagaaatcgggagtgggtcatgagcgatgaagaggagt Alignment from GeneWise GTGGGGAAGGATGACATTGATAACTCCAAACCAGGAGCAGGGCTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGTGGGCCTGGATCTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCT-GCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCTTTGTAGAAGCCAGTCTGAATGGTG gcatctagtctggaaaatgggcactagccttttgtgtctgcttcttccagGTGGGAAAGGATGACATTGATAACTCCAAGCCAGGGGCAGGGCTCAGTAGGCCAGGCACTTCACCCCTAGTCAACCAGTATAGCCTCACAGTAGGCCTGGATCTGGGCCCACATGACACTAAGTCCCTACTTAAGTGTGTAGAATCTCTGTCCTTCATTGTTCGAGATGCTCGCCCACATCACACCTGATAACTTTGAACTGGGTGTCAAGACCCTCTGTATCTTTGTAGAAGCCAGTCTGAACGACGgtaagctctcttgagaaatcgggagtgggtcatgagcgatgaagaggagt #### Gif_ID3279_3 --> 2 - 1 Original Alignment acCTGACAAGTGGGCAGCTTGCCCTCACCGTTATGGCTCTCACGTCCTCCTGCAGAGACCCTGGAAGTAAAGTGTCC-ACTCTACTGAAGAAAATGGAGAACTGGTCACCTTCAa ttcttgtagccacatccttcttgtgtctaaacatttcagtcctcttctagacTTGACAAGTGGGCAGCTGGCTCTCACTGTTATGGCTCTCACATCCTCTTGCAGAGACCCAGGTAGTAAGGTTTCTCACTCTG---AAGAAAATGGAGAACTGGTCACCTTCAagtgagagcagtctatggggagattaggagaaatagagtgtgatctaatgt Alignment from CESAR acCTGACAAGTGGGCAGCTTGCCCTCACCGTTATGGCTCTCACGTCCTCCTGCAGAGACCCTGGAAGTAAAGTGTCCACTCTACTGAAGAAAATGGAGAACTGGTCACCTTCAa ttcttgtagccacatccttcttgtgtctaaacatttcagtcctcttctagacTTGACAAGTGGGCAGCTGGCTCTCACTGTTATGGCTCTCACATCCTCTTGCAGAGACCCAGGTAGTAAGGTTTCTCAC--TCTGAAGAAAATGGAGAACTGGTCACCTTCAagtgagagcagtctatggggagattaggagaaatagagtgtgatctaatgt Alignment from Spaln_aa2Genome ACCTGACAAGTGGGCAGCTTGCCCTCACCGTTATGGCTCTCACGTCCTCCTGCAGAGACCCTGGAAGTAAAGTGTCCACTCTACTGAAGAAAATGGAGAACTGGTCACCTTCAA ttcttgtagccacatccttcttgtgtctaaacatttcagtcctcttctagACTTGACAAGTGGGCAGCTGGCTCTCACTGTTATGGCTCTCACATCCTCTTGCAGAGACCCAGGTAGTAAGGTTTCTC--ACTCTGAAGAAAATGGAGAACTGGTCACCTTCAAgtgagagcagtctatggggagattaggagaaatagagtgtgatctaatgt Alignment from Spaln_nt2Genome ACCTGACAAGTGGGCAGCTTGCCCTCACCGTTATGGCTCTCACGTCCTCCTGCAGAGACCCTGGAAGTAAAGTGTC-CACTCTACTGAAGAAAATGGAGAACTGGTCACCTTCAA ttcttgtagccacatccttcttgtgtctaaacatttcagtcctcttctagACTTGACAAGTGGGCAGCTGGCTCTCACTGTTATGGCTCTCACATCCTCTTGCAGAGACCCAGGTAGTAAGGTTTCTCACT---CTGAAGAAAATGGAGAACTGGTCACCTTCAAgtgagagcagtctatggggagattaggagaaatagagtgtgatctaatgt Alignment from Pairagon ACCTGACAAGTGGGCAGCTTGCCCTCACCGTTATGGCTCTCACGTCCTCCTGCAGAGACCCTGGAAGTAAAGTGTC-CACTCTACTGAAGAAAATGGAGAACTGGTCACCTTCAA ttcttgtagccacatccttcttgtgtctaaacatttcagtcctcttctagACTTGACAAGTGGGCAGCTGGCTCTCACTGTTATGGCTCTCACATCCTCTTGCAGAGACCCAGGTAGTAAGGTTTCTCACT---CTGAAGAAAATGGAGAACTGGTCACCTTCAAgtgagagcagtctatggggagattaggagaaatagagtgtgatctaatgt Alignment from Exonerate_protein2genome ACCTGACAAGTGGGCAGCTTGCCCTCACCGTTATGGCTCTCACGTCCTCCTGCAGAGACCCTGGAAGTAAAGTGTCC-ACTCTACTGAAGAAAATGGAGAACTGGTCACCTTCAA ttcttgtagccacatccttcttgtgtctaaacatttcagtcctcttctagACTTGACAAGTGGGCAGCTGGCTCTCACTGTTATGGCTCTCACATCCTCTTGCAGAGACCCAGGTAGTAAGGTTTCTCACT---CTGAAGAAAATGGAGAACTGGTCACCTTCAAgtgagagcagtctatggggagattaggagaaatagagtgtgatctaatgt Alignment from Exonerate_coding2genome ACCTGACAAGTGGGCAGCTTGCCCTCACCGTTATGGCTCTCACGTCCTCCTGCAGAGACCCTGGAAGTAAAGTGTCC-ACTCTACTGAAGAAAATGGAGAACTGGTCACCTTCAA ttcttgtagccacatccttcttgtgtctaaacatttcagtcctcttctagACTTGACAAGTGGGCAGCTGGCTCTCACTGTTATGGCTCTCACATCCTCTTGCAGAGACCCAGGTAGTAAGGTTTCTCACT---CTGAAGAAAATGGAGAACTGGTCACCTTCAAgtgagagcagtctatggggagattaggagaaatagagtgtgatctaatgt Alignment from GeneWise ACCTGACAAGTGGGCAGCTTGCCCTCACCGTTATGGCTCTCACGTCCTCCTGCAGAGACCCTGGAAGTAAAGTGTCCACTCTACTGAAGAAAATGGAGAACTGGTCACCTTCAA ttcttgtagccacatccttcttgtgtctaaacatttcagtcctcttctagACTTGACAAGTGGGCAGCTGGCTCTCACTGTTATGGCTCTCACATCCTCTTGCAGAGACCCAGGTAGTAAGGTTTCTC--ACTCTGAAGAAAATGGAGAACTGGTCACCTTCAAgtgagagcagtctatggggagattaggagaaatagagtgtgatctaatgt #### Got1_ID8751_4 --> 2 - 0 Original Alignment agAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTAC-TGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatggataagcccctgtattcatcatgtcttcttccttttcttagagAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGACATTCGACCCTATTGCTACCTGGGATGCTGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtgggggatacagaagcacagggaattctgtttagttgcaagaagagata Alignment from CESAR agAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTAC-TGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatggataagcccctgtattcatcatgtcttcttccttttcttagagAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGACATTCGACCCTATTGCTACCTGGGATGCTGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtgggggatacagaagcacagggaattctgtttagttgcaagaagagata Alignment from Spaln_aa2Genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTAC-TGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatggataagcccctgtattcatcatgtcttcttccttttcttagAGAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGACATTCGACCCTATTGCTACcTGGGATGCTGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtgggggatacagaagcacagggaattctgtttagttgcaagaagagata Alignment from Spaln_nt2Genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTA-CTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatggataagcccctgtattcatcatgtcttcttccttttcttagAGAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGACATTCGACCCTATTGCTACCTGGGATGCTGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtgggggatacagaagcacagggaattctgtttagttgcaagaagagata Alignment from Pairagon AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTA-CTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatggataagcccctgtattcatcatgtcttcttccttttcttagAGAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGACATTCGACCCTATTGCTACCTGGGATGCTGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtgggggatacagaagcacagggaattctgtttagttgcaagaagagata Alignment from Exonerate_protein2genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTAC-TGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatggataagcccctgtattcatcatgtcttcttccttttcttagAGAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGACATTCGACCCTATTGCTACCTGGGATGCTGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtgggggatacagaagcacagggaattctgtttagttgcaagaagagata Alignment from Exonerate_coding2genome AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGCTAC-TGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatggataagcccctgtattcatcatgtcttcttccttttcttagAGAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGACATTCGACCCTATTGCTACCTGGGATGCTGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtgggggatacagaagcacagggaattctgtttagttgcaagaagagata Alignment from GeneWise AGAACCATAATGCTGTGTTTTCTGCCGCCGGTTTTAAGGACATTCGGCCCTATTGC-TACTGGGATGCGGAGAAGAGAGGACTGGACCTCCAGGGTTTCCTGAATGATCTGGAG ttcctaatggataagcccctgtattcatcatgtcttcttccttttcttagAGAACCATAATGCTGTATTCTCTGCTGCTGGTTTCAAGGACATTCGACCCTATTGCTACCTGGGATGCTGAGAAAAGAGGACTGGACCTTCAGGGTTTTCTTAATGATCTGGAGgtgggggatacagaagcacagggaattctgtttagttgcaagaagagata #### Gpam_ID11543_6 --> 1 - 0 Original Alignment gCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAG-GCTGCAACTGAG gtgcccgtgatccggttattgtgacgcacctgggcctttctccctgccaggCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAATTAGAGATGGTCAAGCGCTGCCACTGAGgtagcttctgaatttagatacctgggggaaggcttctgtagtattgttat Alignment from CESAR gCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAG-GCTGCAACTGAG gtgcccgtgatccggttattgtgacgcacctgggcctttctccctgccaggCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAATTAGAGATGGTCAAGCGCTGCCACTGAGgtagcttctgaatttagatacctgggggaaggcttctgtagtattgttat Alignment from Spaln_aa2Genome GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAG-GCTGCAACTGAG gtgcccgtgatccggttattgtgacgcacctgggcctttctccctgccagGCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAATTAGAGATGGTCAAGcGCTGCCACTGAGgtagcttctgaatttagatacctgggggaaggcttctgtagtattgttat Alignment from Spaln_nt2Genome GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAG-GCTGCAACTGAG gtgcccgtgatccggttattgtgacgcacctgggcctttctccctgccagGCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAATTAGAGATGGTCAAGCGCTGCCACTGAGgtagcttctgaatttagatacctgggggaaggcttctgtagtattgttat Alignment from Pairagon GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAG-GCTGCAACTGAG gtgcccgtgatccggttattgtgacgcacctgggcctttctccctgccagGCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAATTAGAGATGGTCAAGCGCTGCCACTGAGgtagcttctgaatttagatacctgggggaaggcttctgtagtattgttat Alignment from Exonerate_protein2genome GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAG-GCTGCAACTGAG gtgcccgtgatccggttattgtgacgcacctgggcctttctccctgccagGCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAATTAGAGATGGTCAAGCGCTGCCACTGAGgtagcttctgaatttagatacctgggggaaggcttctgtagtattgttat Alignment from Exonerate_coding2genome GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAG-GCTGCAACTGAG gtgcccgtgatccggttattgtgacgcacctgggcctttctccctgccagGCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAATTAGAGATGGTCAAGCGCTGCCACTGAGgtagcttctgaatttagatacctgggggaaggcttctgtagtattgttat Alignment from GeneWise GCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATG gtgcccgtgatccggttattgtgacgcacctgggcctttctccctgccagGCTGACTGGCTGGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAATTAGAGATGgtcaagcgctgccactgaggtagcttctgaatttagatacctgggggaaggcttctgtagtattgttat #### Gpr137_ID1885_6 --> 0 - 2 Original Alignment AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTT-GACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCag aagttgcagcagaagggcaggacaccagataattttttgttttcttacagAGCACCAGTCAAATCCTTAATGGCCAAGTTTTTGGCTCCCGATCATACTTCTTTCGACAGGGCTGGACACTGTGAGGATGATAGCTGCTCCTGGGAGCACAGCCAAAGCAAGAGCACTaggtatggtccctgacctttatcccaataggaaaagcctacaaacacagagc Alignment from CESAR AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTT-GACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCag aagttgcagcagaagggcaggacaccagataattttttgttttcttacagAGCACCAGTCAAATCCTTAATGGCCAAGTTTTTGGCTCCCGATCATACTTCTTTCGACAGGGCTGGACACTGTGAGGATGATAGCTGCTCCTGGGAGCACAGCCAAAGCAAGAGCACTaggtatggtccctgacctttatcccaataggaaaagcctacaaacacagagc Alignment from Spaln_aa2Genome AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTC-TTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG aagttgcagcagaagggcaggacaccagataattttttgttttcttacagAGCACCAGTCAAATCCTTAATGGCCAAGTTTTTGGCTCCCGATCATACTTCtTTCGACAGGGCTGGACACTGTGAGGATGATAGCTGCTCCTGGGAGCACAGCCAAAGCAAGAGCACTAGgtatggtccctgacctttatcccaataggaaaagcctacaaacacagagc Alignment from Spaln_nt2Genome AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTT-GACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG aagttgcagcagaagggcaggacaccagataattttttgttttcttacagAGCACCAGTCAAATCCTTAATGGCCAAGTTTTTGGCTCCCGATCATACTTCTTTCGACAGGGCTGGACACTGTGAGGATGATAGCTGCTCCTGGGAGCACAGCCAAAGCAAGAGCACTAGgtatggtccctgacctttatcccaataggaaaagcctacaaacacagagc Alignment from Pairagon AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTT-GACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG aagttgcagcagaagggcaggacaccagataattttttgttttcttacagAGCACCAGTCAAATCCTTAATGGCCAAGTTTTTGGCTCCCGATCATACTTCTTTCGACAGGGCTGGACACTGTGAGGATGATAGCTGCTCCTGGGAGCACAGCCAAAGCAAGAGCACTAGgtatggtccctgacctttatcccaataggaaaagcctacaaacacagagc Alignment from Exonerate_protein2genome AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTC-TTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG aagttgcagcagaagggcaggacaccagataattttttgttttcttacagAGCACCAGTCAAATCCTTAATGGCCAAGTTTTTGGCTCCCGATCATACTTCTTTCGACAGGGCTGGACACTGTGAGGATGATAGCTGCTCCTGGGAGCACAGCCAAAGCAAGAGCACTAGgtatggtccctgacctttatcccaataggaaaagcctacaaacacagagc Alignment from Exonerate_coding2genome AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTC-TTTGACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG aagttgcagcagaagggcaggacaccagataattttttgttttcttacagAGCACCAGTCAAATCCTTAATGGCCAAGTTTTTGGCTCCCGATCATACTTCTTTCGACAGGGCTGGACACTGTGAGGATGATAGCTGCTCCTGGGAGCACAGCCAAAGCAAGAGCACTAGgtatggtccctgacctttatcccaataggaaaagcctacaaacacagagc Alignment from GeneWise AGCACCAGTCGAATCCTCAATGGGCAGGTTTTTGGCTCCCGATCCTACTTCTTT-GACCGGGCTGGCCACTGTGAGGATGAGGGCTGCTCCTGGGAGCATAGCCGGAGTGAGAGCACCAG aagttgcagcagaagggcaggacaccagataattttttgttttcttacagAGCACCAGTCAAATCCTTAATGGCCAAGTTTTTGGCTCCCGATCATACTTCTTTCGACAGGGCTGGACACTGTGAGGATGATAGCTGCTCCTGGGAGCACAGCCAAAGCAAGAGCACTAGgtatggtccctgacctttatcccaataggaaaagcctacaaacacagagc #### Gpr137_ID1887_4 --> 0 - 0 Original Alignment GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTA-GATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tagggattgtagagaaacttaggaccccatgcaaactttgtaacttgtagGGGACAAGTGTATGTCAGGTGGCTGCAATAGGG---GCCATGGTCTTGATTTATGCCAGCCGGGCCTGCTATAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGCCGGCTACGATGCCTTCGATTATGACTGGTATAATGTATCAGACCAGgtaaggtacagattattcctggctgccaaggctgcacattagcttctgta Alignment from CESAR GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTA-GATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tagggattgtagagaaacttaggaccccatgcaaactttgtaacttgtagGGGACAAGTGTATGTCAGGTGGCTGCAATAGGG---GCCATGGTCTTGATTTATGCCAGCCGGGCCTGCTATAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGCCGGCTACGATGCCTTCGATTATGACTGGTATAATGTATCAGACCAGgtaaggtacagattattcctggctgccaaggctgcacattagcttctgta Alignment from Spaln_aa2Genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTA-GATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tagggattgtagagaaacttaggaccccatgcaaactttgtaacttgtagGGGACAAGTGTATGTCAGGTGGCTGCAATA---GGGGCCATGGTCTTGATTTATGCCAGCCGGGCCTGCTATAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGCCGGCTAcGATGCCTTCGATTATGACTGGTATAATGTATCAGACCAGgtaaggtacagattattcctggctgccaaggctgcacattagcttctgta Alignment from Spaln_nt2Genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTA-GATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tagggattgtagagaaacttaggaccccatgcaaactttgtaacttgtagGGGACAAGTGTATGTCAGGTGGCTGCAATAGGG---GCCATGGTCTTGATTTATGCCAGCCGGGCCTGCTATAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGCCGGCTACGATGCCTTCGATTATGACTGGTATAATGTATCAGACCAGgtaaggtacagattattcctggctgccaaggctgcacattagcttctgta Alignment from Pairagon GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTA-GATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tagggattgtagagaaacttaggaccccatgcaaactttgtaacttgtagGGGACAAGTGTATGTCAGGTGGCTGCAATAGGG---GCCATGGTCTTGATTTATGCCAGCCGGGCCTGCTATAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGCCGGCTACGATGCCTTCGATTATGACTGGTATAATGTATCAGACCAGgtaaggtacagattattcctggctgccaaggctgcacattagcttctgta Alignment from Exonerate_protein2genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTA-GATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tagggattgtagagaaacttaggaccccatgcaaactttgtaacttgtagGGGACAAGTGTATGTCAGGTGGCTGCAATA---GGGGCCATGGTCTTGATTTATGCCAGCCGGGCCTGCTATAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGCCGGCTACGATGCCTTCGATTATGACTGGTATAATGTATCAGACCAGgtaaggtacagattattcctggctgccaaggctgcacattagcttctgta Alignment from Exonerate_coding2genome GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGGCTA-GATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tagggattgtagagaaacttaggaccccatgcaaactttgtaacttgtagGGGACAAGTGTATGTCAGGTGGCTGCAATA---GGGGCCATGGTCTTGATTTATGCCAGCCGGGCCTGCTATAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGCCGGCTACGATGCCTTCGATTATGACTGGTATAATGTATCAGACCAGgtaaggtacagattattcctggctgccaaggctgcacattagcttctgta Alignment from GeneWise GGGACCAGCGTGTGTCAGGCAGCTGCTATAGGGGGTGCCATGGTCCTTCTCTATGCCAGCCGGGCCTGTTACAACCTGGCAGCTCTGGCCTTGGCCCCTCGGAGCCGG-CTAGATGCCTTCGATTACGACTGGTACAACGTATCTGACCAG tagggattgtagagaaacttaggaccccatgcaaactttgtaacttgtagGGGACAAGTGTATGTCAGGTGGCTGCAATAGGG---GCCATGGTCTTGATTTATGCCAGCCGGGCCTGCTATAACCTGGCAGCCCTGGCCTTGGCACCTCGGAGCCGGCTACGATGCCTTCGATTATGACTGGTATAATGTATCAGACCAGgtaaggtacagattattcctggctgccaaggctgcacattagcttctgta #### Gpr137_ID1889_2 --> 0 - 2 Original Alignment GTGGTGTTCAAGGCCAAGGCG-AAGCGTCGGCCAGAGATGAGCCGAGGCtt aggaggggtaagctcacacatcaaaaaacatcccaggacctctatttcagGTGGTATTTAAGGCCAAAGCTCAAGCGTCGACCAGCAATGAGCCGAGGGctgtaagcagaagaactcactggcagtgaggccgtggctgagatagggggaa Alignment from CESAR GTGGTGTTCAAGGCCAAGGCG-AAGCGTCGGCCAGAGATGAGCCGAGGCtt aggaggggtaagctcacacatcaaaaaacatcccaggacctctatttcagGTGGTATTTAAGGCCAAAGCTCAAGCGTCGACCAGCAATGAGCCGAGGGctgtaagcagaagaactcactggcagtgaggccgtggctgagatagggggaa Alignment from Spaln_aa2Genome GTGGTGTTCAAGGCCAAGGCG-AAGCGTCGGCCAGAGATGAGCCGAGGCTT aggaggggtaagctcacacatcaaaaaacatcccaggacctctatttcagGTGGTATTTAAGGCCAAAGCTcAAGCGTCGACCAGCAATGAGCCGAGGGCTgtaagcagaagaactcactggcagtgaggccgtggctgagatagggggaa Alignment from Spaln_nt2Genome GTGGTGTTCAAGGCCAAGGCG-AAGCGTCGGCCAGAGATGAGCCGAGGCTT aggaggggtaagctcacacatcaaaaaacatcccaggacctctatttcagGTGGTATTTAAGGCCAAAGCTCAAGCGTCGACCAGCAATGAGCCGAGGGCTgtaagcagaagaactcactggcagtgaggccgtggctgagatagggggaa Alignment from Pairagon GTGGTGTTCAAGGCCAAGGC-GAAGCGTCGGCCAGAGATGAGCCGAGGCTT aggaggggtaagctcacacatcaaaaaacatcccaggacctctatttcagGTGGTATTTAAGGCCAAAGCTCAAGCGTCGACCAGCAATGAGCCGAGGGCTgtaagcagaagaactcactggcagtgaggccgtggctgagatagggggaa Alignment from Exonerate_protein2genome GTGGTGTTCAAGGCCAAGGCG-AAGCGTCGGCCAGAGATGAGCCGAGGCTT aggaggggtaagctcacacatcaaaaaacatcccaggacctctatttcagGTGGTATTTAAGGCCAAAGCTCAAGCGTCGACCAGCAATGAGCCGAGGGCTgtaagcagaagaactcactggcagtgaggccgtggctgagatagggggaa Alignment from Exonerate_coding2genome aggaggggtaagctcacacatcaaaaaacatcccaggacctctatttcaggtggtatttaaggccaaagctcaagcgtcgaccagcaatgagccgagggctgtaagcagaagaactcactggcagtgaggccgtggctgagatagggggaa Alignment from GeneWise aggaggggtaagctcacacatcaaaaaacatcccaggacctctatttcaggtggtatttaaggccaaagctcaagcgtcgaccagcaatgagccgagggctgtaagcagaagaactcactggcagtgaggccgtggctgagatagggggaa #### Hectd2_ID7146_4 --> 1 - 0 Original Alignment gGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTT-GATTCTTTCACAGAACTAAACACTGCATTTAAG aagaaagtgccagtttgcctgtatttggtctccatttttctccctgacaggGAAGATCTAGAAAAAGCTGAAGCCACAGGGAATTGGAAAGCAGTACATGCTTTTTATATAACAGCATTTCGATTCCTTCACAGAGCTAAACACTGCATTTAAGgtaagtatgcaaaaaaaagttacttctcactctttggtgtcaaacttaaa Alignment from CESAR gGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTT-GATTCTTTCACAGAACTAAACACTGCATTTAAG aagaaagtgccagtttgcctgtatttggtctccatttttctccctgacaggGAAGATCTAGAAAAAGCTGAAGCCACAGGGAATTGGAAAGCAGTACATGCTTTTTATATAACAGCATTTCGATTCCTTCACAGAGCTAAACACTGCATTTAAGgtaagtatgcaaaaaaaagttacttctcactctttggtgtcaaacttaaa Alignment from Spaln_aa2Genome GGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTT-GATTCTTTCACAGAACTAAACACTGCATTTAAG aagaaagtgccagtttgcctgtatttggtctccatttttctccctgacagGGAAGATCTAGAAAAAGCTGAAGCCACAGGGAATTGGAAAGCAGTACATGCTTTTTATATAACAGCATTTcGATTCCTTCACAGAGCTAAACACTGCATTTAAGgtaagtatgcaaaaaaaagttacttctcactctttggtgtcaaacttaaa Alignment from Spaln_nt2Genome GGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTT-GATTCTTTCACAGAACTAAACACTGCATTTAAG aagaaagtgccagtttgcctgtatttggtctccatttttctccctgacagGGAAGATCTAGAAAAAGCTGAAGCCACAGGGAATTGGAAAGCAGTACATGCTTTTTATATAACAGCATTTCGATTCCTTCACAGAGCTAAACACTGCATTTAAGgtaagtatgcaaaaaaaagttacttctcactctttggtgtcaaacttaaa Alignment from Pairagon GGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTT-GATTCTTTCACAGAACTAAACACTGCATTTAAG aagaaagtgccagtttgcctgtatttggtctccatttttctccctgacagGGAAGATCTAGAAAAAGCTGAAGCCACAGGGAATTGGAAAGCAGTACATGCTTTTTATATAACAGCATTTCGATTCCTTCACAGAGCTAAACACTGCATTTAAGgtaagtatgcaaaaaaaagttacttctcactctttggtgtcaaacttaaa Alignment from Exonerate_protein2genome GGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCA-TTTGATTCTTTCACAGAACTAAACACTGCATTTAAG aagaaagtgccagtttgcctgtatttggtctccatttttctccctgacagGGAAGATCTAGAAAAAGCTGAAGCCACAGGGAATTGGAAAGCAGTACATGCTTTTTATATAACAGCATTTCGATTCCTTCACAGAGCTAAACACTGCATTTAAGgtaagtatgcaaaaaaaagttacttctcactctttggtgtcaaacttaaa Alignment from Exonerate_coding2genome GGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCA-TTTGATTCTTTCACAGAACTAAACACTGCATTTAAG aagaaagtgccagtttgcctgtatttggtctccatttttctccctgacagGGAAGATCTAGAAAAAGCTGAAGCCACAGGGAATTGGAAAGCAGTACATGCTTTTTATATAACAGCATTTCGATTCCTTCACAGAGCTAAACACTGCATTTAAGgtaagtatgcaaaaaaaagttacttctcactctttggtgtcaaacttaaa Alignment from GeneWise GGAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACA-GCATTTGATTCTTTCACAGAACTAAACACTGCATTTAAG aagaaagtgccagtttgcctgtatttggtctccatttttctccctgacagGGAAGATCTAGAAAAAGCTGAAGCCACAGGGAATTGGAAAGCAGTACATGCTTTTTATATAACAGCATTTCGATTCCTTCACAGAGCTAAACACTGCATTTAAGgtaagtatgcaaaaaaaagttacttctcactctttggtgtcaaacttaaa #### Hells_ID7708_15 --> 0 - 0 Original Alignment ATTGATGAAGAGTTGGTAACAAATTCTGGGAAG-TTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG tcagtaattctaaattctattgttgaaaccttcctctgtgtctctcacagAATGATGAAGAGTTGGTAACAAATTCTGGGAAGCTTCTTGATTTCAGATCGAATGCTGCCAGAACTTAAGAAAAGAGGTCATAAGgtgagtatggctagaatttgtgctcttcagcttcatatgggtcagtgtag Alignment from CESAR ATTGATGAAGAGTTGGTAACAAATTCTGGGAAG-TTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG tcagtaattctaaattctattgttgaaaccttcctctgtgtctctcacagAATGATGAAGAGTTGGTAACAAATTCTGGGAAGCTTCTTGATTTCAGATCGAATGCTGCCAGAACTTAAGAAAAGAGGTCATAAGgtgagtatggctagaatttgtgctcttcagcttcatatgggtcagtgtag Alignment from Spaln_aa2Genome ATTGATGAAGAGTTGGTAACAAATTCTGGGAAG-TTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG tcagtaattctaaattctattgttgaaaccttcctctgtgtctctcacagAATGATGAAGAGTTGGTAACAAATTCTGGGAAGcTTCTTGATTTCAGATCGAATGCTGCCAGAACTTAAGAAAAGAGGTCATAAGgtgagtatggctagaatttgtgctcttcagcttcatatgggtcagtgtag Alignment from Spaln_nt2Genome ATTGATGAAGAGTTGGTAACAAATTCTGGGAAG-TTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG tcagtaattctaaattctattgttgaaaccttcctctgtgtctctcacagAATGATGAAGAGTTGGTAACAAATTCTGGGAAGCTTCTTGATTTCAGATCGAATGCTGCCAGAACTTAAGAAAAGAGGTCATAAGgtgagtatggctagaatttgtgctcttcagcttcatatgggtcagtgtag Alignment from Pairagon ATTGATGAAGAGTTGGTAACAAATTCTGGGAAG-TTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG tcagtaattctaaattctattgttgaaaccttcctctgtgtctctcacagAATGATGAAGAGTTGGTAACAAATTCTGGGAAGCTTCTTGATTTCAGATCGAATGCTGCCAGAACTTAAGAAAAGAGGTCATAAGgtgagtatggctagaatttgtgctcttcagcttcatatgggtcagtgtag Alignment from Exonerate_protein2genome ATTGATGAAGAGTTGGTAACAAATTCTGGGAAG-TTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG tcagtaattctaaattctattgttgaaaccttcctctgtgtctctcacagAATGATGAAGAGTTGGTAACAAATTCTGGGAAGCTTCTTGATTTCAGATCGAATGCTGCCAGAACTTAAGAAAAGAGGTCATAAGgtgagtatggctagaatttgtgctcttcagcttcatatgggtcagtgtag Alignment from Exonerate_coding2genome ATTGATGAAGAGTTGGTAACAAATTCTGGGAAG-TTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG tcagtaattctaaattctattgttgaaaccttcctctgtgtctctcacagAATGATGAAGAGTTGGTAACAAATTCTGGGAAGCTTCTTGATTTCAGATCGAATGCTGCCAGAACTTAAGAAAAGAGGTCATAAGgtgagtatggctagaatttgtgctcttcagcttcatatgggtcagtgtag Alignment from GeneWise ATTGATGAAGAGTTGGTAACAAATTCTGGG-AAGTTCTTAATTTTGGATCGAATGCTGCCCGAACTTAAAAAAAGAGGTCACAAG tcagtaattctaaattctattgttgaaaccttcctctgtgtctctcacagAATGATGAAGAGTTGGTAACAAATTCTGGGAAGCTTCTTGATTTCAGATCGAATGCTGCCAGAACTTAAGAAAAGAGGTCATAAGgtgagtatggctagaatttgtgctcttcagcttcatatgggtcagtgtag #### Hif1an_ID9067_5 --> 0 - 2 Original Alignment GTGGACTTTGACAATCCTGACTACGAGAGGTTC-CCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACtg taaagatctatagtgagaactggattgtaacttaccattgtgatcctaagGTGGACTTTGATAATCCGGATTATGAGAGGTTCCCCCAATTTTCGAAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATTCCCATGTATtggtgagttgcacatgaataaagggcggtgctgttctgagagtgttttactg Alignment from CESAR GTGGACTTTGACAATCCTGACTACGAGAGGTTC-CCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACtg taaagatctatagtgagaactggattgtaacttaccattgtgatcctaagGTGGACTTTGATAATCCGGATTATGAGAGGTTCCCCCAATTTTCGAAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATTCCCATGTATtggtgagttgcacatgaataaagggcggtgctgttctgagagtgttttactg Alignment from Spaln_aa2Genome GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAAT-TTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG taaagatctatagtgagaactggattgtaacttaccattgtgatcctaagGTGGACTTTGATAATCCGGATTATGAGAGGTTCCCCCAAtTTTCGAAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATTCCCATGTATTGgtgagttgcacatgaataaagggcggtgctgttctgagagtgttttactg Alignment from Spaln_nt2Genome GTGGACTTTGACAATCCTGACTACGAGAGGTT-CCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG taaagatctatagtgagaactggattgtaacttaccattgtgatcctaagGTGGACTTTGATAATCCGGATTATGAGAGGTTCCCCCAATTTTCGAAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATTCCCATGTATTGgtgagttgcacatgaataaagggcggtgctgttctgagagtgttttactg Alignment from Pairagon GTGGACTTTGACAATCCTGACTACGAGAGGTT-CCCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG taaagatctatagtgagaactggattgtaacttaccattgtgatcctaagGTGGACTTTGATAATCCGGATTATGAGAGGTTCCCCCAATTTTCGAAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATTCCCATGTATTGgtgagttgcacatgaataaagggcggtgctgttctgagagtgttttactg Alignment from Exonerate_protein2genome GTGGACTTTGACAATCCTGACTACGAGAGGTTC-CCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG taaagatctatagtgagaactggattgtaacttaccattgtgatcctaagGTGGACTTTGATAATCCGGATTATGAGAGGTTCCCCCAATTTTCGAAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATTCCCATGTATTGgtgagttgcacatgaataaagggcggtgctgttctgagagtgttttactg Alignment from Exonerate_coding2genome GTGGACTTTGACAATCCTGACTACGAGAGGTTC-CCCAATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG taaagatctatagtgagaactggattgtaacttaccattgtgatcctaagGTGGACTTTGATAATCCGGATTATGAGAGGTTCCCCCAATTTTCGAAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATTCCCATGTATTGgtgagttgcacatgaataaagggcggtgctgttctgagagtgttttactg Alignment from GeneWise GTGGACTTTGACAATCCTGACTACGAGAGGTTCCCC-AATTTCCGAAATGTGGTTGGTTATGAGACAGTGGTTGGCCCTGGGGATGTTCTTTACATCCCAATGTACTG taaagatctatagtgagaactggattgtaacttaccattgtgatcctaagGTGGACTTTGATAATCCGGATTATGAGAGGTTCCCCCAATTTTCGAAATGTGGTTGGTTATGAGACAGTAGTTGGCCCTGGGGATGTACTATACATTCCCATGTATTGgtgagttgcacatgaataaagggcggtgctgttctgagagtgttttactg #### Hnrnpul2_ID2399_3 --> 1 - 1 Original Alignment cTCAAAGTCCCCACCACCTCCAGAAGAA-GAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGt ggataagttataattataacatgtttgggaatgaattctttattctgtagcTCGAGGTCCCCCTCACCTCCAGAGGAACGAAGCTAAAGATGAGGAGGAGGCCCAGTCACTAGTGAACTTGGACACTtgtaggtagatgcatggtatggcttacctttacaaatagagcattgttctg Alignment from CESAR cTCAAAGTCCCCACCACCTCCAGAAGAA-GAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGt ggataagttataattataacatgtttgggaatgaattctttattctgtagcTCGAGGTCCCCCTCACCTCCAGAGGAACGAAGCTAAAGATGAGGAGGAGGCCCAGTCACTAGTGAACTTGGACACTtgtaggtagatgcatggtatggcttacctttacaaatagagcattgttctg Alignment from Spaln_aa2Genome CTCAAAGTCCCCACCACCTCCAGAAGAA-GAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT ggataagttataattataacatgtttgggaatgaattctttattctgtagCTCGAGGTCCCCCTCACCTCCAGAGGAAcGAAGCTAAAGATGAGGAGGAGGCCCAGTCACTAGTGAACTTGGACACTTgtaggtagatgcatggtatggcttacctttacaaatagagcattgttctg Alignment from Spaln_nt2Genome CTCAAAGTCCCCACCACCTCCAGAAGAA-GAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT ggataagttataattataacatgtttgggaatgaattctttattctgtagCTCGAGGTCCCCCTCACCTCCAGAGGAACGAAGCTAAAGATGAGGAGGAGGCCCAGTCACTAGTGAACTTGGACACTTgtaggtagatgcatggtatggcttacctttacaaatagagcattgttctg Alignment from Pairagon CTCAAAGTCCCCACCACCTCCAGAAGAA-GAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT ggataagttataattataacatgtttgggaatgaattctttattctgtagCTCGAGGTCCCCCTCACCTCCAGAGGAACGAAGCTAAAGATGAGGAGGAGGCCCAGTCACTAGTGAACTTGGACACTTgtaggtagatgcatggtatggcttacctttacaaatagagcattgttctg Alignment from Exonerate_protein2genome CTCAAAGTCCCCACCACCTCCAGAAGAA-GAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT ggataagttataattataacatgtttgggaatgaattctttattctgtagCTCGAGGTCCCCCTCACCTCCAGAGGAACGAAGCTAAAGATGAGGAGGAGGCCCAGTCACTAGTGAACTTGGACACTTgtaggtagatgcatggtatggcttacctttacaaatagagcattgttctg Alignment from Exonerate_coding2genome CTCAAAGTCCCCACCACCTCCAGAAGAA-GAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT ggataagttataattataacatgtttgggaatgaattctttattctgtagCTCGAGGTCCCCCTCACCTCCAGAGGAACGAAGCTAAAGATGAGGAGGAGGCCCAGTCACTAGTGAACTTGGACACTTgtaggtagatgcatggtatggcttacctttacaaatagagcattgttctg Alignment from GeneWise CTCAAAGTCCCCACCACCTCCAGAA-GAAGAAGCAAAAGATGAAGAGGAGGACCAGACGCTTGTGAACCTGGACACGT ggataagttataattataacatgtttgggaatgaattctttattctgtagCTCGAGGTCCCCCTCACCTCCAGAGGAACGAAGCTAAAGATGAGGAGGAGGCCCAGTCACTAGTGAACTTGGACACTTgtaggtagatgcatggtatggcttacctttacaaatagagcattgttctg #### Hnrnpul2_ID2404_8 --> 0 - 0 Original Alignment GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAAT-GTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagaaaatctaataatgttgctaattttctctttctcttccacacagGTGATTCTGATGGTGGGAGTCCCTGGATCGGCAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATCGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaacttgttggattggcaaggtgtgattagcagaattgccggaggtcat Alignment from CESAR GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAAT-GTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagaaaatctaataatgttgctaattttctctttctcttccacacagGTGATTCTGATGGTGGGAGTCCCTGGATCGGCAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATCGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaacttgttggattggcaaggtgtgattagcagaattgccggaggtcat Alignment from Spaln_aa2Genome GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAAT-GTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagaaaatctaataatgttgctaattttctctttctcttccacacagGTGATTCTGATGGTGGGAGTCCCTGGATCGGCAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATcGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaacttgttggattggcaaggtgtgattagcagaattgccggaggtcat Alignment from Spaln_nt2Genome GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAAT-GTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagaaaatctaataatgttgctaattttctctttctcttccacacagGTGATTCTGATGGTGGGAGTCCCTGGATCGGCAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATCGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaacttgttggattggcaaggtgtgattagcagaattgccggaggtcat Alignment from Pairagon GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAAT-GTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagaaaatctaataatgttgctaattttctctttctcttccacacagGTGATTCTGATGGTGGGAGTCCCTGGATCGGCAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATCGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaacttgttggattggcaaggtgtgattagcagaattgccggaggtcat Alignment from Exonerate_protein2genome GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAAT-GTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagaaaatctaataatgttgctaattttctctttctcttccacacagGTGATTCTGATGGTGGGAGTCCCTGGATCGGCAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATCGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaacttgttggattggcaaggtgtgattagcagaattgccggaggtcat Alignment from Exonerate_coding2genome GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAAT-GTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagaaaatctaataatgttgctaattttctctttctcttccacacagGTGATTCTGATGGTGGGAGTCCCTGGATCGGCAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATCGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaacttgttggattggcaaggtgtgattagcagaattgccggaggtcat Alignment from GeneWise GTGATTCTGATGGTGGGACTTCCTGGATCTGGAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAAT-GTTCTGGGAGCTGAGACTGTTCTCACGCAAATGAGG tagtagaaaatctaataatgttgctaattttctctttctcttccacacagGTGATTCTGATGGTGGGAGTCCCTGGATCGGCAAAGACCCAGTGGGCACTGAAATACGCAAAAGACAACCCTGAGAGAAGATACAATCGTTCTGGGAGCTGAGACTGTCCTCACGCAAATGAGGgtaacttgttggattggcaaggtgtgattagcagaattgccggaggtcat #### Hnrnpul2_ID2408_12 --> 2 - 0 Original Alignment tgGGCGGGCAGCGCCGAGGCTACGAC-AACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG caaatcatttgtttgtgaatctgcaatgagcctccatgccattcctgcagtgGGTGGGCAGCGCCGAGGCTATGACCAACCAGGCCTATGGGCAGCAGTACTGGGGGCAGCCTGGAACCAGAGGGgtgagcgcatacccttctttactcctccctccagtctgtgaaggaattga Alignment from CESAR tgGGCGGGCAGCGCCGAGGCTACGAC-AACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG caaatcatttgtttgtgaatctgcaatgagcctccatgccattcctgcagtgGGTGGGCAGCGCCGAGGCTATGACCAACCAGGCCTATGGGCAGCAGTACTGGGGGCAGCCTGGAACCAGAGGGgtgagcgcatacccttctttactcctccctccagtctgtgaaggaattga Alignment from Spaln_aa2Genome TGGGCGGGCAGCGCCGAGGCTACGAC-AACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG caaatcatttgtttgtgaatctgcaatgagcctccatgccattcctgcagTGGGTGGGCAGCGCCGAGGCTATGACcAACCAGGCCTATGGGCAGCAGTACTGGGGGCAGCCTGGAACCAGAGGGgtgagcgcatacccttctttactcctccctccagtctgtgaaggaattga Alignment from Spaln_nt2Genome TGGGCGGGCAGCGCCGAGGCTACGAC-AACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG caaatcatttgtttgtgaatctgcaatgagcctccatgccattcctgcagTGGGTGGGCAGCGCCGAGGCTATGACCAACCAGGCCTATGGGCAGCAGTACTGGGGGCAGCCTGGAACCAGAGGGgtgagcgcatacccttctttactcctccctccagtctgtgaaggaattga Alignment from Pairagon TGGGCGGGCAGCGCCGAGGCTACGA-CAACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG caaatcatttgtttgtgaatctgcaatgagcctccatgccattcctgcagTGGGTGGGCAGCGCCGAGGCTATGACCAACCAGGCCTATGGGCAGCAGTACTGGGGGCAGCCTGGAACCAGAGGGgtgagcgcatacccttctttactcctccctccagtctgtgaaggaattga Alignment from Exonerate_protein2genome TGGGCGGGCAGCGCCGAGGCTACGAC-AACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG caaatcatttgtttgtgaatctgcaatgagcctccatgccattcctgcagTGGGTGGGCAGCGCCGAGGCTATGACCAACCAGGCCTATGGGCAGCAGTACTGGGGGCAGCCTGGAACCAGAGGGgtgagcgcatacccttctttactcctccctccagtctgtgaaggaattga Alignment from Exonerate_coding2genome TGGGCGGGCAGCGCCGAGGCTACGAC-AACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG caaatcatttgtttgtgaatctgcaatgagcctccatgccattcctgcagTGGGTGGGCAGCGCCGAGGCTATGACCAACCAGGCCTATGGGCAGCAGTACTGGGGGCAGCCTGGAACCAGAGGGgtgagcgcatacccttctttactcctccctccagtctgtgaaggaattga Alignment from GeneWise TGGGCGGGCAGCGCCGAGGCTACGAC-AACCGGGCCTACGGGCAGCAGTACTGGGGGCAGTCTGGAAACAGAGGG caaatcatttgtttgtgaatctgcaatgagcctccatgccattcctgcagTGGGTGGGCAGCGCCGAGGCTATGACCAACCAGGCCTATGGGCAGCAGTACTGGGGGCAGCCTGGAACCAGAGGGgtgagcgcatacccttctttactcctccctccagtctgtgaaggaattga #### Hoga1_ID8382_5 --> 0 - 1 Original Alignment GTGACCAGGATTGGACTGATAGTTCAC---AAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGC-TTCCTCCTGGCCAGCTATGCTGTGg gataaatgtaatggggatcaggatcattcatgactctctctctcttgcagGTGACCAGGATTGGACTGATAGTTCATCACAAGACTAGCAAGCAGGATTTTCAGGTGTTGGCAGGGTCCGTTGGCCTCCCTTCTAGCTAGCTATTCTGTGggtaagtttgctgtcagtgctaaaccaccctctccaaccaagttgcgttgc Alignment from CESAR GTGACCAGGATTGGACTGATAGTT---CACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTC-CTCCTGGCCAGCTATGCTGTGg gataaatgtaatggggatcaggatcattcatgactctctctctcttgcagGTGACCAGGATTGGACTGATAGTTCATCACAAGACTAGCAAGCAGGATTTTCAGGTGTTGGCAGGGTCCGTTGGCCTCCCTTCTAGCTAGCTATTCTGTGggtaagtttgctgtcagtgctaaaccaccctctccaaccaagttgcgttgc Alignment from Spaln_aa2Genome GTGACCAGGATTGGACTGATAGTT---CACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTC-CTCCTGGCCAGCTATGCTGTGG gataaatgtaatggggatcaggatcattcatgactctctctctcttgcagGTGACCAGGATTGGACTGATAGTTCATCACAAGACTAGCAAGCAGGATTTTCAGGTGTTGGCAGGGTCCGTTGGCCTCcCTTCTAGCTAGCTATTCTGTGGgtaagtttgctgtcagtgctaaaccaccctctccaaccaagttgcgttgc Alignment from Spaln_nt2Genome GTGACCAGGATTGGACTGATAGT---TCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTCC-TCCTGGCCAGCTATGCTGTGG gataaatgtaatggggatcaggatcattcatgactctctctctcttgcagGTGACCAGGATTGGACTGATAGTTCATCACAAGACTAGCAAGCAGGATTTTCAGGTGTTGGCAGGGTCCGTTGGCCTCCCTTCTAGCTAGCTATTCTGTGGgtaagtttgctgtcagtgctaaaccaccctctccaaccaagttgcgttgc Alignment from Pairagon GTGACCAGGATTGGACTGATAGT---TCACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGG-CTTCCTCCTGGCCAGCTATGCTGTGG gataaatgtaatggggatcaggatcattcatgactctctctctcttgcagGTGACCAGGATTGGACTGATAGTTCATCACAAGACTAGCAAGCAGGATTTTCAGGTGTTGGCAGGGTCCGTTGGCCTCCCTTCTAGCTAGCTATTCTGTGGgtaagtttgctgtcagtgctaaaccaccctctccaaccaagttgcgttgc Alignment from Exonerate_protein2genome GTGACCAGGATTGGACTGATAGTT---CACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTC-CTCCTGGCCAGCTATGCTGTGG gataaatgtaatggggatcaggatcattcatgactctctctctcttgcagGTGACCAGGATTGGACTGATAGTTCATCACAAGACTAGCAAGCAGGATTTTCAGGTGTTGGCAGGGTCCGTTGGCCTCCCTTCTAGCTAGCTATTCTGTGGgtaagtttgctgtcagtgctaaaccaccctctccaaccaagttgcgttgc Alignment from Exonerate_coding2genome GTGACCAGGATTGGACTGATAGTT---CACAAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGCTTC-CTCCTGGCCAGCTATGCTGTGG gataaatgtaatggggatcaggatcattcatgactctctctctcttgcagGTGACCAGGATTGGACTGATAGTTCATCACAAGACTAGCAAGCAGGATTTTCAGGTGTTGGCAGGGTCCGTTGGCCTCCCTTCTAGCTAGCTATTCTGTGGgtaagtttgctgtcagtgctaaaccaccctctccaaccaagttgcgttgc Alignment from GeneWise GTGACCAGGATTGGACTGATAGTTCAC---AAGACCAGCAAGCAGGATTTCCAGGTGTTGGCTGGGTCAGCTGGC-TTCCTCCTGGCCAGCTATGCTGTGG gataaatgtaatggggatcaggatcattcatgactctctctctcttgcagGTGACCAGGATTGGACTGATAGTTCATCACAAGACTAGCAAGCAGGATTTTCAGGTGTTGGCAGGGTCCGTTGGCCTCCCTTCTAGCTAGCTATTCTGTGGgtaagtttgctgtcagtgctaaaccaccctctccaaccaagttgcgttgc #### Hps1_ID8614_14 --> 1 - 2 Original Alignment gGAGAGGCTTCTGGACTGG-AAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGtc ctgaggatgacacaagtagttattgcactttcatgaattctttcatgtaggGAGAGACTTTTGGACTGGCAAGGATTTTTCCTTGGTGAATAGCTGGAGAAATGTCACCATGGTAgcgtaagttcttgattatatattcataggaataatagggctattgaaaattc Alignment from CESAR gGAGAGGCTTCTGGACTGG-AAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGtc ctgaggatgacacaagtagttattgcactttcatgaattctttcatgtaggGAGAGACTTTTGGACTGGCAAGGATTTTTCCTTGGTGAATAGCTGGAGAAATGTCACCATGGTAgcgtaagttcttgattatatattcataggaataatagggctattgaaaattc Alignment from Spaln_aa2Genome GGAGAGGCTTCTGGACTGG-AAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGTC ctgaggatgacacaagtagttattgcactttcatgaattctttcatgtagGGAGAGACTTTTGGACTGGcAAGGATTTTTCCTTGGTGAATAGCTGGAGAAATGTCACCATGGTAGCgtaagttcttgattatatattcataggaataatagggctattgaaaattc Alignment from Spaln_nt2Genome GGAGAGGCTTCTGGACTGG-AAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGTC ctgaggatgacacaagtagttattgcactttcatgaattctttcatgtagGGAGAGACTTTTGGACTGGCAAGGATTTTTCCTTGGTGAATAGCTGGAGAAATGTCACCATGGTAGCgtaagttcttgattatatattcataggaataatagggctattgaaaattc Alignment from Pairagon GGAGAGGCTTCTGGACTGG-AAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGTC ctgaggatgacacaagtagttattgcactttcatgaattctttcatgtagGGAGAGACTTTTGGACTGGCAAGGATTTTTCCTTGGTGAATAGCTGGAGAAATGTCACCATGGTAGCgtaagttcttgattatatattcataggaataatagggctattgaaaattc Alignment from Exonerate_protein2genome GGAGAGGCTTCTGGACTGG-AAGGACTTCCTGTTGGTGAAGAGCCGGAGAAATGTCACCATGGTGTC ctgaggatgacacaagtagttattgcactttcatgaattctttcatgtagGGAGAGACTTTTGGACTGGCAAGGATTTTTCCTTGGTGAATAGCTGGAGAAATGTCACCATGGTAGCgtaagttcttgattatatattcataggaataatagggctattgaaaattc Alignment from Exonerate_coding2genome ctgaggatgacacaagtagttattgcactttcatgaattctttcatgtagggagagacttttggactggcaaggatttttccttggtgaatagctggagaaatgtcaccatggtagcgtaagttcttgattatatattcataggaataatagggctattgaaaattc Alignment from GeneWise ctgaggatgacacaagtagttattgcactttcatgaattctttcatgtagggagagacttttggactggcaaggatttttccttggtgaatagctggagaaatgtcaccatggtagcgtaagttcttgattatatattcataggaataatagggctattgaaaattc #### Hps1_ID8617_11 --> 0 - 0 Original Alignment AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGT-CAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG ccccatcccctgggtgcccctatctcaaactgcatttctactcttcacagAGCCCTGGCGCCCCACTCACCCAAATTCTATGCCAACTGCTGGATGGATTCTCGCTCCTGGAGAAAAAGTTGAAGGAGGGCCCAGGAGGCTGGCAGTGCCCTACGATCCCAGCCCTTTGTGACTGACCCACACCAGAAC---AACAAGTTCATCAAGAATCGGGTAGGGCAGGAGATTCAGgtatggtctcagaactaatgtgggccaatgttggaggagctgactagggc Alignment from CESAR AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGT-CAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG ccccatcccctgggtgcccctatctcaaactgcatttctactcttcacagAGCCCTGGCGCCCCACTCACCCAAATTCTATGCCAACTGCTGGATGGATTCTCGCTCCTGGAGAAAAAGTTGAAGGAGGGCCCAGGAGGCTGGCAGTGCCCTACGATCCCAGCCCTTTGTGACTGACCCACACCAGAAC---AACAAGTTCATCAAGAATCGGGTAGGGCAGGAGATTCAGgtatggtctcagaactaatgtgggccaatgttggaggagctgactagggc Alignment from Spaln_aa2Genome AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGT-CAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG ccccatcccctgggtgcccctatctcaaactgcatttctactcttcacagAGCCCTGGCGCCCCACTCACCCAAATTCTATGCCAACTGCTGGATGGATTCTCGCTCCTGGAGAAAAAGTTGAAGGAGGGCcCAGGAGGCTGGCAGTGCCCTACGATCCCAGCCCTTTGTGACTGACCCACACCAGAAC---AACAAGTTCATCAAGAATCGGGTAGGGCAGGAGATTCAGgtatggtctcagaactaatgtgggccaatgttggaggagctgactagggc Alignment from Spaln_nt2Genome AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGTC-AGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG ccccatcccctgggtgcccctatctcaaactgcatttctactcttcacagAGCCCTGGCGCCCCACTCACCCAAATTCTATGCCAACTGCTGGATGGATTCTCGCTCCTGGAGAAAAAGTTGAAGGAGGGCCCAGGAGGCTGGCAGTGCCCTACGATCCCAGCCCTTTGTGACTGACCCACACCAGAACA---ACAAGTTCATCAAGAATCGGGTAGGGCAGGAGATTCAGgtatggtctcagaactaatgtgggccaatgttggaggagctgactagggc Alignment from Pairagon AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGG-TCAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG ccccatcccctgggtgcccctatctcaaactgcatttctactcttcacagAGCCCTGGCGCCCCACTCACCCAAATTCTATGCCAACTGCTGGATGGATTCTCGCTCCTGGAGAAAAAGTTGAAGGAGGGCCCAGGAGGCTGGCAGTGCCCTACGATCCCAGCCCTTTGTGACTGACCCACACCAGAACA---ACAAGTTCATCAAGAATCGGGTAGGGCAGGAGATTCAGgtatggtctcagaactaatgtgggccaatgttggaggagctgactagggc Alignment from Exonerate_protein2genome AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGT-CAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG ccccatcccctgggtgcccctatctcaaactgcatttctactcttcacagAGCCCTGGCGCCCCACTCACCCAAATTCTATGCCAACTGCTGGATGGATTCTCGCTCCTGGAGAAAAAGTTGAAGGAGGGCCCAGGAGGCTGGCAGTGCCCTACGATCCCAGCCCTTTGTGACTGACCCACACCAGAAC---AACAAGTTCATCAAGAATCGGGTAGGGCAGGAGATTCAGgtatggtctcagaactaatgtgggccaatgttggaggagctgactagggc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise AGCCCCAGCACCCCACTGGCCCTGATCCTGTACCAACTGCTGGATGGCTTCTCCCTCCTGGAGAAAAAGCTGAAGGAAGGT-CAGGAGGCCGGAAGTGCCCTGCGATCCCAGCCCTTTGTTGCAGACCTGCGCCAGAAGATGGACAAGTTTATCAAGAATCGAGTTGGGCAGGAGATTCAG ccccatcccctgggtgcccctatctcaaactgcatttctactcttcacagAGCCCTGGCGCCCCACTCACCCAAATTCTATGCCAACTGCTGGATGGATTCTCGCTCCTGGAGAAAAAGTTGAAGGAGGGCCCAGGAGGCTGGCAGTGCCCTACGATCCCAGCCCTTTGTGACTGACCCACACCAGAAC---AACAAGTTCATCAAGAATCGGGTAGGGCAGGAGATTCAGgtatggtctcagaactaatgtgggccaatgttggaggagctgactagggc #### Hps1_ID8622_6 --> 1 - 0 Original Alignment cCATGGTGCGAGCACCCTGCGC-CCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGC---CCTCAG tccccccacaccattttagttgtattctctgttcttggccattcacacagcCAAGGCGCAAGCACCCTGTGTCCCAGCAGATCTCCTT---------CTCCTAGTGCATGATCTACAGCCCTCACCAGCTATGACAGAGGAGGAGGGGGAGCAAGAAGATGGTCACAGCAGCCCACAGgtaagggcagatccacagaataagggtaaactaattgcactaagatagaa Alignment from CESAR cCATGGTGCGAGCACCCTGCGCCCC-GCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGC---GACAGCCCTCAG tccccccacaccattttagttgtattctctgttcttggccattcacacagcCAAGGCGCAAGCACCCTGTGTCCCAGCAGATCTCCTT---------CTCCTAGTGCATGATCTACAGCCCTCACCAGCTATGACAGAGGAGGAGGGGGAGCAAGAAGATGGTCACAGCAGCCCACAGgtaagggcagatccacagaataagggtaaactaattgcactaagatagaa Alignment from Spaln_aa2Genome CCATGGTGCGAGCACCCTGCGC-CCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGAC---AGCCCTCAG tccccccacaccattttagttgtattctctgttcttggccattcacacagCCAAGGCGCAAGCACCCTGTGTcCCAGCAGATCTCCTT---------CTCCTAGTGCATGATCTACAGCCCTCACCAGCTATGACAGAGGAGGAGGGGGAGCAAGAAGATGGTCACAGCAGCCCACAGgtaagggcagatccacagaataagggtaaactaattgcactaagatagaa Alignment from Spaln_nt2Genome CCATGGTGCGAGCACCCTGCGCCCC-GCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGCGACAGC---CCTCAG tccccccacaccattttagttgtattctctgttcttggccattcacacagCCAAGGCGCAAGCACCCTGTGTCCCAGCAGATCTCC---------TTCTCCTAGTGCATGATCTACAGCCCTCACCAGCTATGACAGAGGAGGAGGGGGAGCAAGAAGATGGTCACAGCAGCCCACAGgtaagggcagatccacagaataagggtaaactaattgcactaagatagaa Alignment from Pairagon CCATGGTGCGAGCACCCTGCGCCCC-GCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAG---CGACAGCCCTCAG tccccccacaccattttagttgtattctctgttcttggccattcacacagCCAAGGCGCAAGCACCCTGTGTCCCAGCAGATCTCC---------TTCTCCTAGTGCATGATCTACAGCCCTCACCAGCTATGACAGAGGAGGAGGGGGAGCAAGAAGATGGTCACAGCAGCCCACAGgtaagggcagatccacagaataagggtaaactaattgcactaagatagaa Alignment from Exonerate_protein2genome CCATGGTGCGAGCACCCTGCGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGC---GACAGCCCTCAG tccccccacaccattttagttgtattctctgttcttggccatTCACACAGCCAAGGCGCAAGCACCCTGTGTCCCAGCAGATCTCCTTCTCCTAGTGCATGATCTACAGCCCTCACCAGCTATGACAGAGGAGGAGGGGGAGCAAGAAGATGGTCACAGCAGCCCACAGgtaagggcagatccacagaataagggtaaactaattgcactaagatagaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise CCATGGTGCGAGCACCCTG-CGCCCCGCAGACCTCCTGGCGCTCATCCTTCTGGTGCAGGACCTCCAGCCCTCCCCAGGAACCACAGAGGAGGAGGAGGAGGAGGAGGATAGC---GACAGCCCTCAG tccccccacaccattttagttgtattctctgttcttggccattcacacagCCAAGGCGCAAGCACCCTGTGTCCCAGCAGATCTCCTT---------CTCCTAGTGCATGATCTACAGCCCTCACCAGCTATGACAGAGGAGGAGGGGGAGCAAGAAGATGGTCACAGCAGCCCACAGgtaagggcagatccacagaataagggtaaactaattgcactaagatagaa #### Il33_ID6362_5 --> 2 - 1 Original Alignment acCAGGTGCTACTACGCTACTAT-GAGTCTCCCTGTCCTGCAAGTCAATCAg aatcccatagtctcatctttatgaaatcctgcctgcccttctgcttggagacCAAGTGCTGCTGTGCTATTATCGAGTCACCCTGTCCTGCAAGTCAATCTggtaagacagtcacaaggggagaatggtgctcagagtgtctacgaagtctc Alignment from CESAR acCAGGTGCTACTACGCTACTAT-GAGTCTCCCTGTCCTGCAAGTCAATCAg aatcccatagtctcatctttatgaaatcctgcctgcccttctgcttggagacCAAGTGCTGCTGTGCTATTATCGAGTCACCCTGTCCTGCAAGTCAATCTggtaagacagtcacaaggggagaatggtgctcagagtgtctacgaagtctc Alignment from Spaln_aa2Genome ACCAGGTGCTACTACGCTACTAT-GAGTCTCCCTGTCCTGCAAGTCAATCAG aatcccatagtctcatctttatgaaatcctgcctgcccttctgcttggagACCAAGTGCTGCTGTGCTATTATcGAGTCACCCTGTCCTGCAAGTCAATCTGgtaagacagtcacaaggggagaatggtgctcagagtgtctacgaagtctc Alignment from Spaln_nt2Genome ACCAGGTGCTACTACGCTACTAT-GAGTCTCCCTGTCCTGCAAGTCAATCAG aatcccatagtctcatctttatgaaatcctgcctgcccttctgcttggagACCAAGTGCTGCTGTGCTATTATCGAGTCACCCTGTCCTGCAAGTCAATCTGgtaagacagtcacaaggggagaatggtgctcagagtgtctacgaagtctc Alignment from Pairagon ACCAGGTGCTACTACGCTACTAT-GAGTCTCCCTGTCCTGCAAGTCAATCAG aatcccatagtctcatctttatgaaatcctgcctgcccttctgcttggagACCAAGTGCTGCTGTGCTATTATCGAGTCACCCTGTCCTGCAAGTCAATCTGgtaagacagtcacaaggggagaatggtgctcagagtgtctacgaagtctc Alignment from Exonerate_protein2genome ACCAGGTGCTACTACGCTACTAT-GAGTCTCCCTGTCCTGCAAGTCAATCAG aatcccatagtctcatctttatgaaatcctgcctgcccttctgcttggagACCAAGTGCTGCTGTGCTATTATCGAGTCACCCTGTCCTGCAAGTCAATCTGgtaagacagtcacaaggggagaatggtgctcagagtgtctacgaagtctc Alignment from Exonerate_coding2genome ACCAGGTGCTACTACGCTACTAT-GAGTCTCCCTGTCCTGCAAGTCAATCAG aatcccatagtctcatctttatgaaatcctgcctgcccttctgcttggagACCAAGTGCTGCTGTGCTATTATCGAGTCACCCTGTCCTGCAAGTCAATCTGgtaagacagtcacaaggggagaatggtgctcagagtgtctacgaagtctc Alignment from GeneWise aatcccatagtctcatctttatgaaatcctgcctgcccttctgcttggagaccaagtgctgctgtgctattatcgagtcaccctgtcctgcaagtcaatctggtaagacagtcacaaggggagaatggtgctcagagtgtctacgaagtctc #### Incenp_ID2604_15 --> 0 - 0 Original Alignment GAAGAGCAACAGCGCCTGGCTGAGCAG-CAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gagggtagtgatgctgtaaggggggaggcaagctttactttgtatttcagGAGGAGAAACAGCACCTGGCTAAGCAGCCAGCCACAGGAAGAGCAGGCACGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAGGGTGCTCAACATGATGGTGGATGTGAGAgtgagttggagaagctagcctccggatcaatcgaatgtatgcttgctgtg Alignment from CESAR GAAGAGCAACAGCGCCTGGCTGAGCAG-CAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gagggtagtgatgctgtaaggggggaggcaagctttactttgtatttcagGAGGAGAAACAGCACCTGGCTAAGCAGCCAGCCACAGGAAGAGCAGGCACGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAGGGTGCTCAACATGATGGTGGATGTGAGAgtgagttggagaagctagcctccggatcaatcgaatgtatgcttgctgtg Alignment from Spaln_aa2Genome GAAGAGCAACAGCGCCTGGCTGAGCAG-CAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gagggtagtgatgctgtaaggggggaggcaagctttactttgtatttcagGAGGAGAAACAGCACCTGGCTAAGCAGcCAGCCACAGGAAGAGCAGGCACGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAGGGTGCTCAACATGATGGTGGATGTGAGAgtgagttggagaagctagcctccggatcaatcgaatgtatgcttgctgtg Alignment from Spaln_nt2Genome GAAGAGCAACAGCGCCTGGCTGAGCAGCAA-CTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gagggtagtgatgctgtaaggggggaggcaagctttactttgtatttcagGAGGAGAAACAGCACCTGGCTAAGCAGCCAGCCACAGGAAGAGCAGGCACGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAGGGTGCTCAACATGATGGTGGATGTGAGAgtgagttggagaagctagcctccggatcaatcgaatgtatgcttgctgtg Alignment from Pairagon GAAGAGCAACAGCGCCTGGCTGAGCAG-CAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gagggtagtgatgctgtaaggggggaggcaagctttactttgtatttcagGAGGAGAAACAGCACCTGGCTAAGCAGCCAGCCACAGGAAGAGCAGGCACGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAGGGTGCTCAACATGATGGTGGATGTGAGAgtgagttggagaagctagcctccggatcaatcgaatgtatgcttgctgtg Alignment from Exonerate_protein2genome GAAGAGCAACAGCGCCTGGCTGAGCAG-CAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gagggtagtgatgctgtaaggggggaggcaagctttactttgtatttcagGAGGAGAAACAGCACCTGGCTAAGCAGCCAGCCACAGGAAGAGCAGGCACGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAGGGTGCTCAACATGATGGTGGATGTGAGAgtgagttggagaagctagcctccggatcaatcgaatgtatgcttgctgtg Alignment from Exonerate_coding2genome GAAGAGCAACAGCGCCTGGCTGAGCAG-CAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gagggtagtgatgctgtaaggggggaggcaagctttactttgtatttcagGAGGAGAAACAGCACCTGGCTAAGCAGCCAGCCACAGGAAGAGCAGGCACGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAGGGTGCTCAACATGATGGTGGATGTGAGAgtgagttggagaagctagcctccggatcaatcgaatgtatgcttgctgtg Alignment from GeneWise GCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAAAGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAG gagggtagtgatgctgtaaggggggaggcaagctttactttgtatttcaggaggagaaacagCACCTGGCTAAGCAGCCAGCCACAGGAAGAGCAGGCACGGAAAGCAAAGGAGGTGGCAGCAGCCAGAAGGGTGCTCAACATGATGGTGGATGTGAGAgtgagttggagaagctagcctccggatcaatcgaatgtatgcttgctgtg #### Incenp_ID2605_14 --> 1 - 0 Original Alignment gGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTG-GAGGAGAAGAAGAGGAAG ttgttggaaactcgcttcattggaagaccgatgcattttgatttgtttaggGAGATGCAAGAGAGAGAGAAAGCCTTGAGACTCCAAAAGGAACGACTTCAAAAGGAACTGCGGGGAAAAGAAGCGGAAGgtaaaggccttgtaaagatatattctccagggtaaatttgaactaaagca Alignment from CESAR gGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTG-GAGGAGAAGAAGAGGAAG ttgttggaaactcgcttcattggaagaccgatgcattttgatttgtttaggGAGATGCAAGAGAGAGAGAAAGCCTTGAGACTCCAAAAGGAACGACTTCAAAAGGAACTGCGGGGAAAAGAAGCGGAAGgtaaaggccttgtaaagatatattctccagggtaaatttgaactaaagca Alignment from Spaln_aa2Genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTG-GAGGAGAAGAAGAGGAAG ttgttggaaactcgcttcattggaagaccgatgcattttgatttgtttagGGAGATGCAAGAGAGAGAGAAAGCCTTGAGACTCCAAAAGGAACGACTTCAAAAGGAACTGcGGGGAAAAGAAGCGGAAGgtaaaggccttgtaaagatatattctccagggtaaatttgaactaaagca Alignment from Spaln_nt2Genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTG-GAGGAGAAGAAGAGGAAG ttgttggaaactcgcttcattggaagaccgatgcattttgatttgtttagGGAGATGCAAGAGAGAGAGAAAGCCTTGAGACTCCAAAAGGAACGACTTCAAAAGGAACTGCGGGGAAAAGAAGCGGAAGgtaaaggccttgtaaagatatattctccagggtaaatttgaactaaagca Alignment from Pairagon GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTG-GAGGAGAAGAAGAGGAAG ttgttggaaactcgcttcattggaagaccgatgcattttgatttgtttagGGAGATGCAAGAGAGAGAGAAAGCCTTGAGACTCCAAAAGGAACGACTTCAAAAGGAACTGCGGGGAAAAGAAGCGGAAGgtaaaggccttgtaaagatatattctccagggtaaatttgaactaaagca Alignment from Exonerate_protein2genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAG-GAGAAGAAGAGGAAG ttgttggaaactcgcttcattggaagaccgatgcattttgatttgtttagGGAGATGCAAGAGAGAGAGAAAGCCTTGAGACTCCAAAAGGAACGACTTCAAAAGGAACTGCGGGGAAAAGAAGCGGAAGgtaaaggccttgtaaagatatattctccagggtaaatttgaactaaagca Alignment from Exonerate_coding2genome GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAG-GAGAAGAAGAGGAAG ttgttggaaactcgcttcattggaagaccgatgcattttgatttgtttagGGAGATGCAAGAGAGAGAGAAAGCCTTGAGACTCCAAAAGGAACGACTTCAAAAGGAACTGCGGGGAAAAGAAGCGGAAGgtaaaggccttgtaaagatatattctccagggtaaatttgaactaaagca Alignment from GeneWise GGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGGAGGAGAAGAAGAGGAAG------------ ttgttggaaactcgcttcattggaagaccgatgcattttgatttgtttagGGAGATGCAAGAGAGAGAGAAAGCCTTGAGACTCCAAAAGGAACGACTTCAAAAGGAACTGCGGGGAAAAGAAGCGGAAGGTAAAGGCCTTgtaaagatatattctccagggtaaatttgaactaaagca #### Incenp_ID2608_11 --> 1 - 0 Original Alignment gAAGCGTGAAGAGCGCCTCCGCAAGGTGTTG-CAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG tgagcccctcagaagttacagaggctctatgtcctatgtctctgtcccaggAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGCCAAGCCCGTGAGAGGGTAGAACAGATGAAGGAGGAGAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAgtatggctagaagagcagtcagagtatatttggaagggtttccaaattgg Alignment from CESAR gAAGCGTGAAGAGCGCCTCCGCAAGGTGTTG-CAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG tgagcccctcagaagttacagaggctctatgtcctatgtctctgtcccaggAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGCCAAGCCCGTGAGAGGGTAGAACAGATGAAGGAGGAGAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAgtatggctagaagagcagtcagagtatatttggaagggtttccaaattgg Alignment from Spaln_aa2Genome GAAGCGTGAAGAGCGCCTCCGCAAGGTGTTG-CAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG tgagcccctcagaagttacagaggctctatgtcctatgtctctgtcccagGAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGcCAAGCCCGTGAGAGGGTAGAACAGATGAAGGAGGAGAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAgtatggctagaagagcagtcagagtatatttggaagggtttccaaattgg Alignment from Spaln_nt2Genome GAAGCGTGAAGAGCGCCTCCGCAAGGTGTTG-CAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG tgagcccctcagaagttacagaggctctatgtcctatgtctctgtcccagGAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGCCAAGCCCGTGAGAGGGTAGAACAGATGAAGGAGGAGAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAgtatggctagaagagcagtcagagtatatttggaagggtttccaaattgg Alignment from Pairagon GAAGCGTGAAGAGCGCCTCCGCAAGGTGTTG-CAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG tgagcccctcagaagttacagaggctctatgtcctatgtctctgtcccagGAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGCCAAGCCCGTGAGAGGGTAGAACAGATGAAGGAGGAGAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAgtatggctagaagagcagtcagagtatatttggaagggtttccaaattgg Alignment from Exonerate_protein2genome GAAGCGTGAAGAGCGCCTCCGCAAGGTGTTG-CAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG tgagcccctcagaagttacagaggctctatgtcctatgtctctgtcccagGAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGCCAAGCCCGTGAGAGGGTAGAACAGATGAAGGAGGAGAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAgtatggctagaagagcagtcagagtatatttggaagggtttccaaattgg Alignment from Exonerate_coding2genome GAAGCGTGAAGAGCGCCTCCGCAAGGTGTTG-CAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG tgagcccctcagaagttacagaggctctatgtcctatgtctctgtcccagGAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGCCAAGCCCGTGAGAGGGTAGAACAGATGAAGGAGGAGAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAgtatggctagaagagcagtcagagtatatttggaagggtttccaaattgg Alignment from GeneWise GAAGCGTGAAGAGCGCCTCCGCAAGGTG-TTGCAGGCCCGTGAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGAAGACAGAAAAG tgagcccctcagaagttacagaggctctatgtcctatgtctctgtcccagGAAGCGTGAAGAGCGGCTCCGCAAGGTGTTGCCAAGCCCGTGAGAGGGTAGAACAGATGAAGGAGGAGAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAAATTGATGAGAAGACAGAAAAAgtatggctagaagagcagtcagagtatatttggaagggtttccaaattgg #### Kat5_ID1109_13 --> 1 - 0 Original Alignment tGAGATCAGTGAAATCACTAGT-ATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG gtggtagggtttctacaggtgataactttttgtttaactattttttccagtGAGATCAGTGAAATTACTAGTCATTAAGAAAGAAGATGTCATCTCTACGCTGCAGTATCTCAACCTCATCAATTACTACAAGgtgagagggcataactacaaggtgacacaacttgcttatacttaaacact Alignment from CESAR tGAGATCAGTGAAATCACTAGT-ATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG gtggtagggtttctacaggtgataactttttgtttaactattttttccagtGAGATCAGTGAAATTACTAGTCATTAAGAAAGAAGATGTCATCTCTACGCTGCAGTATCTCAACCTCATCAATTACTACAAGgtgagagggcataactacaaggtgacacaacttgcttatacttaaacact Alignment from Spaln_aa2Genome TGAGATCAGTGAAATCACTAGT-ATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG gtggtagggtttctacaggtgataactttttgtttaactattttttccagTGAGATCAGTGAAATTACTAGTcATTAAGAAAGAAGATGTCATCTCTACGCTGCAGTATCTCAACCTCATCAATTACTACAAGgtgagagggcataactacaaggtgacacaacttgcttatacttaaacact Alignment from Spaln_nt2Genome TGAGATCAGTGAAATCACTAGT-ATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG gtggtagggtttctacaggtgataactttttgtttaactattttttccagTGAGATCAGTGAAATTACTAGTCATTAAGAAAGAAGATGTCATCTCTACGCTGCAGTATCTCAACCTCATCAATTACTACAAGgtgagagggcataactacaaggtgacacaacttgcttatacttaaacact Alignment from Pairagon TGAGATCAGTGAAATCACTAGT-ATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG gtggtagggtttctacaggtgataactttttgtttaactattttttccagTGAGATCAGTGAAATTACTAGTCATTAAGAAAGAAGATGTCATCTCTACGCTGCAGTATCTCAACCTCATCAATTACTACAAGgtgagagggcataactacaaggtgacacaacttgcttatacttaaacact Alignment from Exonerate_protein2genome TGAGATCAGTGAAATCACTAGT-ATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG gtggtagggtttctacaggtgataactttttgtttaactattttttccagTGAGATCAGTGAAATTACTAGTCATTAAGAAAGAAGATGTCATCTCTACGCTGCAGTATCTCAACCTCATCAATTACTACAAGgtgagagggcataactacaaggtgacacaacttgcttatacttaaacact Alignment from Exonerate_coding2genome TGAGATCAGTGAAATCACTAGT-ATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG gtggtagggtttctacaggtgataactttttgtttaactattttttccagTGAGATCAGTGAAATTACTAGTCATTAAGAAAGAAGATGTCATCTCTACGCTGCAGTATCTCAACCTCATCAATTACTACAAGgtgagagggcataactacaaggtgacacaacttgcttatacttaaacact Alignment from GeneWise TGAGATCAGTGAAATCACTAGTATCAAGAAAGAAGATGTCATCTCCACACTGCAGTATCTCAACCTCATCAATTACTACAAG gtggtagggtttctacaggtgataactttttgtttaactattttttccagtgagATCAGTG---AAATTACTAGTCATTAAGAAAGAAGATGTCATCTCTACGCTGCAGTATCTCAACCTCATCAATTACTACAAGgtgagagggcataactacaaggtgacacaacttgcttatacttaaacact #### Kat5_ID1114_8 --> 0 - 0 Original Alignment GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGC-CGTAGCCTCAAGTGTCTGCAACGCCACTTG gcccaccccagtactcagctactaacatcccgctgctttcctcctcctagGATCCTCAGGACAGCTCAGATGGGATACCAACAGCTCCACGAATGACAGGCAGCCTAGTATCTGACCAAAGCCATGATGACATTGTCACCCAAATGAAGAACATTGAGTGCATTGAGCTTGGCAGGCATCACCTTAAGCCATGGTATTTCTCCCCATAT---CAAGTGCTCACCACCCTACCTATCCTCTACCTGTGTGAATTTTGCCTGAAGTATGGCCCATAGTCTCAAGTGCCTTAAGCGCCACCTTgtaaaaggtgacttaggtgttggtgtgcctcagcacccttactggtgacc Alignment from CESAR GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGC-CGTAGCCTCAAGTGTCTGCAACGCCACTTG gcccaccccagtactcagctactaacatcccgctgctttcctcctcctagGATCCTCAGGACAGCTCAGATGGGATACCAACAGCTCCACGAATGACAGGCAGCCTAGTATCTGACCAAAGCCATGATGACATTGTCACCCAAATGAAGAACATTGAGTGCATTGAGCTTGGCAGGCATCACCTTAAGCCATGGTATTTCTCCCCATAT---CAAGTGCTCACCACCCTACCTATCCTCTACCTGTGTGAATTTTGCCTGAAGTATGGCCCATAGTCTCAAGTGCCTTAAGCGCCACCTTgtaaaaggtgacttaggtgttggtgtgcctcagcacccttactggtgacc Alignment from Spaln_aa2Genome GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGC-CGTAGCCTCAAGTGTCTGCAACGCCACTTG gcccaccccagtactcagctactaacatcccgctgctttcctcctcctagGATCCTCAGGACAGCTCAGATGGGATACCAACAGCTCCACGAATGACAGGCAGCCTAGTATCTGACCAAAGCCATGATGACATTGTCACCCAAATGAAGAACATTGAGTGCATTGAGCTTGGCAGGCATCACCTTAAGCCATGGTATTTCTCCCCATAT---CAAGTGCTCACCACCCTACCTATCCTCTACCTGTGTGAATTTTGCCTGAAGTATGGCcCATAGTCTCAAGTGCCTTAAGCGCCACCTTgtaaaaggtgacttaggtgttggtgtgcctcagcacccttactggtgacc Alignment from Spaln_nt2Genome GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGCCG-TAGCCTCAAGTGTCTGCAACGCCACTTG gcccaccccagtactcagctactaacatcccgctgctttcctcctcctagGATCCTCAGGACAGCTCAGATGGGATACCAACAGCTCCACGAATGACAGGCAGCCTAGTATCTGACCAAAGCCATGATGACATTGTCACCCAAATGAAGAACATTGAGTGCATTGAGCTTGGCAGGCATCACCTTAAGCCATGGTATTTCTCCCCATA---TCAAGTGCTCACCACCCTACCTATCCTCTACCTGTGTGAATTTTGCCTGAAGTATGGCCCATAGTCTCAAGTGCCTTAAGCGCCACCTTgtaaaaggtgacttaggtgttggtgtgcctcagcacccttactggtgacc Alignment from Pairagon GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGG-CCGTAGCCTCAAGTGTCTGCAACGCCACTTG gcccaccccagtactcagctactaacatcccgctgctttcctcctcctagGATCCTCAGGACAGCTCAGATGGGATACCAACAGCTCCACGAATGACAGGCAGCCTAGTATCTGACCAAAGCCATGATGACATTGTCACCCAAATGAAGAACATTGAGTGCATTGAGCTTGGCAGGCATCACCTTAAGCCATGGTATTTCTCCCCATAT---CAAGTGCTCACCACCCTACCTATCCTCTACCTGTGTGAATTTTGCCTGAAGTATGGCCCATAGTCTCAAGTGCCTTAAGCGCCACCTTgtaaaaggtgacttaggtgttggtgtgcctcagcacccttactggtgacc Alignment from Exonerate_protein2genome GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGC-CGTAGCCTCAAGTGTCTGCAACGCCACTTG gcccaccccagtactcagctactaacatcccgctgctttcctcctcctagGATCCTCAGGACAGCTCAGATGGGATACCAACAGCTCCACGAATGACAGGCAGCCTAGTATCTGACCAAAGCCATGATGACATTGTCACCCAAATGAAGAACATTGAGTGCATTGAGCTTGGCAGGCATCACCTTAAGCCATGGTATTTCTCCCCATAT---CAAGTGCTCACCACCCTACCTATCCTCTACCTGTGTGAATTTTGCCTGAAGTATGGCCCATAGTCTCAAGTGCCTTAAGCGCCACCTTgtaaaaggtgacttaggtgttggtgtgcctcagcacccttactggtgacc Alignment from Exonerate_coding2genome GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGC-CGTAGCCTCAAGTGTCTGCAACGCCACTTG gcccaccccagtactcagctactaacatcccgctgctttcctcctcctagGATCCTCAGGACAGCTCAGATGGGATACCAACAGCTCCACGAATGACAGGCAGCCTAGTATCTGACCAAAGCCATGATGACATTGTCACCCAAATGAAGAACATTGAGTGCATTGAGCTTGGCAGGCATCACCTTAAGCCATGGTATTTCTCCCCATAT---CAAGTGCTCACCACCCTACCTATCCTCTACCTGTGTGAATTTTGCCTGAAGTATGGCCCATAGTCTCAAGTGCCTTAAGCGCCACCTTgtaaaaggtgacttaggtgttggtgtgcctcagcacccttactggtgacc Alignment from GeneWise GATTCTCAGGACAGCTCAGATGGAATACCGTCAGCACCACGAATGACTGGCAGTCTGGTGTCTGACCGGAGCCACGACGACATTGTCACCCGGATGAAGAACATTGAGTGTATTGAGCTTGGCCGGCACCGCCTCAAGCCGTGGTACTTCTCCCCGTACCCACAAGAGCTTACCACGCTACCCGTCCTCTACCTGTGCGAATTTTGCCTCAAATATGGC-CGTAGCCTCAAGTGTCTGCAACGCCACTTG gcccaccccagtactcagctactaacatcccgctgctttcctcctcctagGATCCTCAGGACAGCTCAGATGGGATACCAACAGCTCCACGAATGACAGGCAGCCTAGTATCTGACCAAAGCCATGATGACATTGTCACCCAAATGAAGAACATTGAGTGCATTGAGCTTGGCAGGCATCACCTTAAGCCATGGTATTTCTCCCCATAT---CAAGTGCTCACCACCCTACCTATCCTCTACCTGTGTGAATTTTGCCTGAAGTATGGCCCATAGTCTCAAGTGCCTTAAGCGCCACCTTgtaaaaggtgacttaggtgttggtgtgcctcagcacccttactggtgacc #### Kat5_ID1115_7 --> 0 - 0 Original Alignment AATGGGTCAGCCCGTAGG---GCAGTGGCAGCC-CAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG acacttactgaataagaccatcttctcataatttatttcatttccattagAATGGATCAACTTGTAGAGCTGCTGTAGCAGCCCCAGCCCGGGTGGAAGCGCAAATCTAACTGCTTAGGCACTGATGAGgtaagtccccagcaggggtggacttaaatttaacttctgattgcctggcc Alignment from CESAR AATGGGTCAGCCCGTAGGGCA---GTGGCAGCC-CAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG acacttactgaataagaccatcttctcataatttatttcatttccattagAATGGATCAACTTGTAGAGCTGCTGTAGCAGCCCCAGCCCGGGTGGAAGCGCAAATCTAACTGCTTAGGCACTGATGAGgtaagtccccagcaggggtggacttaaatttaacttctgattgcctggcc Alignment from Spaln_aa2Genome AATGGGTCAGCCCGTAGGGCAGTGGCAGCC----CAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG acacttactgaataagaccatcttctcataatttatttcatttccattagAATGGATCAACTTGTAGAGCTGCTGTAGCAGCCcCAGCCCGGGTGGAAGCGCAAATCTAACTGCTTAGGCACTGATGAGgtaagtccccagcaggggtggacttaaatttaacttctgattgcctggcc Alignment from Spaln_nt2Genome AATGGGTCAGCCCGTAGGGCAG---TGGCAGCCC-AGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG acacttactgaataagaccatcttctcataatttatttcatttccattagAATGGATCAACTTGTAGAGCTGCTGTAGCAGCCCCAGCCCGGGTGGAAGCGCAAATCTAACTGCTTAGGCACTGATGAGgtaagtccccagcaggggtggacttaaatttaacttctgattgcctggcc Alignment from Pairagon AATGGGTCAGCCCGTAGGGCAGTGGCAG----CCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG acacttactgaataagaccatcttctcataatttatttcatttccattagAATGGATCAACTTGTAGAGCTGCTGTAGCAGCCCCAGCCCGGGTGGAAGCGCAAATCTAACTGCTTAGGCACTGATGAGgtaagtccccagcaggggtggacttaaatttaacttctgattgcctggcc Alignment from Exonerate_protein2genome AATGGGTCAGCCCGTAGGGCAGTGGCAGCC----CAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG acacttactgaataagaccatcttctcataatttatttcatttccattagAATGGATCAACTTGTAGAGCTGCTGTAGCAGCCCCAGCCCGGGTGGAAGCGCAAATCTAACTGCTTAGGCACTGATGAGgtaagtccccagcaggggtggacttaaatttaacttctgattgcctggcc Alignment from Exonerate_coding2genome AATGGGTCAGCCCGTAGGGCAGTGGCAGCC----CAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG acacttactgaataagaccatcttctcataatttatttcatttccattagAATGGATCAACTTGTAGAGCTGCTGTAGCAGCCCCAGCCCGGGTGGAAGCGCAAATCTAACTGCTTAGGCACTGATGAGgtaagtccccagcaggggtggacttaaatttaacttctgattgcctggcc Alignment from GeneWise AATGGGTCAGCC---CGTAGGGCAGTGGCA-GCCCAGCCTGGACGGAAGCGGAAATCTAATTGCTTGGGCACTGATGAG acacttactgaataagaccatcttctcataatttatttcatttccattagAATGGATCAACTTGTAGAGCTGCTGTAGCAGCCCCAGCCCGGGTGGAAGCGCAAATCTAACTGCTTAGGCACTGATGAGgtaagtccccagcaggggtggacttaaatttaacttctgattgcctggcc #### Kat5_ID1116_6 --> 0 - 0 Original Alignment AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTG-CCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG ctcataccagctcctgtgtcttctaaccccacggtggtctctcctgtcagAAACGGAAGATTGAGGTAGTTTCACCAACCAGTCTGGTGCCCCAGTGAGACAGCTGCAGTCTCTGTTTTCCCTCAGgtaagtcttcaacctcttcttagagattgatatgtttagtctttactttt Alignment from CESAR AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTG-CCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG ctcataccagctcctgtgtcttctaaccccacggtggtctctcctgtcagAAACGGAAGATTGAGGTAGTTTCACCAACCAGTCTGGTGCCCCAGTGAGACAGCTGCAGTCTCTGTTTTCCCTCAGgtaagtcttcaacctcttcttagagattgatatgtttagtctttactttt Alignment from Spaln_aa2Genome AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTG-CCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG ctcataccagctcctgtgtcttctaaccccacggtggtctctcctgtcagAAACGGAAGATTGAGGTAGTTTCACCAACCAGTCTGGTGcCCCAGTGAGACAGCTGCAGTCTCTGTTTTCCCTCAGgtaagtcttcaacctcttcttagagattgatatgtttagtctttactttt Alignment from Spaln_nt2Genome AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTGCCC-AGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG ctcataccagctcctgtgtcttctaaccccacggtggtctctcctgtcagAAACGGAAGATTGAGGTAGTTTCACCAACCAGTCTGGTGCCCCAGTGAGACAGCTGCAGTCTCTGTTTTCCCTCAGgtaagtcttcaacctcttcttagagattgatatgtttagtctttactttt Alignment from Pairagon AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTG-CCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG ctcataccagctcctgtgtcttctaaccccacggtggtctctcctgtcagAAACGGAAGATTGAGGTAGTTTCACCAACCAGTCTGGTGCCCCAGTGAGACAGCTGCAGTCTCTGTTTTCCCTCAGgtaagtcttcaacctcttcttagagattgatatgtttagtctttactttt Alignment from Exonerate_protein2genome AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTG-CCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG ctcataccagctcctgtgtcttctaaccccacggtggtctctcctgtcagAAACGGAAGATTGAGGTAGTTTCACCAACCAGTCTGGTGCCCCAGTGAGACAGCTGCAGTCTCTGTTTTCCCTCAGgtaagtcttcaacctcttcttagagattgatatgtttagtctttactttt Alignment from Exonerate_coding2genome AAACGGAAGGTGGAGGTGGTTTCACCAGCAACCCCAGTG-CCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG ctcataccagctcctgtgtcttctaaccccacggtggtctctcctgtcagAAACGGAAGATTGAGGTAGTTTCACCAACCAGTCTGGTGCCCCAGTGAGACAGCTGCAGTCTCTGTTTTCCCTCAGgtaagtcttcaacctcttcttagagattgatatgtttagtctttactttt Alignment from GeneWise AAACGGAAGGTGGAGGTGGTTTCACCAGCAACC-CCAGTGCCCAGCGAGACAGCCCCAGCCTCGGTTTTCCCTCAG ctcataccagctcctgtgtcttctaaccccacggtggtctctcctgtcagAAACGGAAGATTGAGGTAGTTTCACCAACCAGTCTGGTGCCCCAGTGAGACAGCTGCAGTCTCTGTTTTCCCTCAGgtaagtcttcaacctcttcttagagattgatatgtttagtctttactttt #### Kcnip2_ID9606_6 --> 2 - 0 Original Alignment acTCCAGCAACTACGCTACTTTTCTCTTC-AATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG agagccaagggaaagtagatatgaaaccttcttactccccctccccccagacTCCAGCAACTATGCTACTTTCCTCTTCCAATGCCTTTGACACCAACCATGATGGCTCTGTTAGTTTTGAAgtgagtcaagaaaaaagatgcattaaagaaactaaccctgttaactgtgc Alignment from CESAR acTCCAGCAACTACGCTACTTTTCTCTTC-AATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG agagccaagggaaagtagatatgaaaccttcttactccccctccccccagacTCCAGCAACTATGCTACTTTCCTCTTCCAATGCCTTTGACACCAACCATGATGGCTCTGTTAGTTTTGAAgtgagtcaagaaaaaagatgcattaaagaaactaaccctgttaactgtgc Alignment from Spaln_aa2Genome ACTCCAGCAACTACGCTACTTTTCTCTTC-AATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG agagccaagggaaagtagatatgaaaccttcttactccccctccccccagACTCCAGCAACTATGCTACTTTCCTCTTCcAATGCCTTTGACACCAACCATGATGGCTCTGTTAGTTTTGAAgtgagtcaagaaaaaagatgcattaaagaaactaaccctgttaactgtgc Alignment from Spaln_nt2Genome ACTCCAGCAACTACGCTACTTTTCTCTTC-AATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG agagccaagggaaagtagatatgaaaccttcttactccccctccccccagACTCCAGCAACTATGCTACTTTCCTCTTCCAATGCCTTTGACACCAACCATGATGGCTCTGTTAGTTTTGAAgtgagtcaagaaaaaagatgcattaaagaaactaaccctgttaactgtgc Alignment from Pairagon ACTCCAGCAACTACGCTACTTTTCTCTT-CAATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG agagccaagggaaagtagatatgaaaccttcttactccccctccccccagACTCCAGCAACTATGCTACTTTCCTCTTCCAATGCCTTTGACACCAACCATGATGGCTCTGTTAGTTTTGAAgtgagtcaagaaaaaagatgcattaaagaaactaaccctgttaactgtgc Alignment from Exonerate_protein2genome ACTCCAGCAACTACGCTACTTTTCTCTTC-AATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG agagccaagggaaagtagatatgaaaccttcttactccccctccccccagACTCCAGCAACTATGCTACTTTCCTCTTCCAATGCCTTTGACACCAACCATGATGGCTCTGTTAGTTTTGAAgtgagtcaagaaaaaagatgcattaaagaaactaaccctgttaactgtgc Alignment from Exonerate_coding2genome ACTCCAGCAACTACGCTACTTTTCTCTTC-AATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG agagccaagggaaagtagatatgaaaccttcttactccccctccccccagACTCCAGCAACTATGCTACTTTCCTCTTCCAATGCCTTTGACACCAACCATGATGGCTCTGTTAGTTTTGAAgtgagtcaagaaaaaagatgcattaaagaaactaaccctgttaactgtgc Alignment from GeneWise ACTCCAGCAACTACGCTACTTTTCTCTTC-AATGCCTTTGACACCAACCATGATGGCTCTGTCAGTTTTGAG agagccaagggaaagtagatatgaaaccttcttactccccctccccccagACTCCAGCAACTATGCTACTTTCCTCTTCCAATGCCTTTGACACCAACCATGATGGCTCTGTTAGTTTTGAAgtgagtcaagaaaaaagatgcattaaagaaactaaccctgttaactgtgc #### Kcnip2_ID9608_4 --> 2 - 0 Original Alignment acAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAG-TTCACACGCAGAGAGTTGCAGGTCCTGTACAGAGGCTTCAAGAAC tgaaggtcttgtgcttgtaatgaagtatgactacactttttcctttttagatAGTGTTGAGGATGAGTTTGAACTCTCAATGATTTGCCACCGGCCAGAAAGTTTGGAACAACTGCAGAAACAAGCCAAGCTTTGCACGCAGAGAGTTGCAGGTCTTGTATAGAGGGTTCAAGAATgtactagggggatggaactagctgtgcagtagcctaacctccaagtttag Alignment from CESAR acAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAG-TTCACACGCAGAGAGTTGCAGGTCCTGTACAGAGGCTTCAAGAAC tgaaggtcttgtgcttgtaatgaagtatgactacactttttcctttttagatAGTGTTGAGGATGAGTTTGAACTCTCAATGATTTGCCACCGGCCAGAAAGTTTGGAACAACTGCAGAAACAAGCCAAGCTTTGCACGCAGAGAGTTGCAGGTCTTGTATAGAGGGTTCAAGAATgtactagggggatggaactagctgtgcagtagcctaacctccaagtttag Alignment from Spaln_aa2Genome ACAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAG-TTCACACGCAGAGAGTTGCAGGTCCTGTACAGAGGCTTCAAGAAC tgaaggtcttgtgcttgtaatgaagtatgactacactttttcctttttagATAGTGTTGAGGATGAGTTTGAACTCTCAATGATTTGCCACCGGCCAGAAAGTTTGGAACAACTGCAGAAACAAGCCAAGcTTTGCACGCAGAGAGTTGCAGGTCTTGTATAGAGGGTTCAAGAATgtactagggggatggaactagctgtgcagtagcctaacctccaagtttag Alignment from Spaln_nt2Genome ACAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAG-TTCACACGCAGAGAGTTGCAGGTCCTGTACAGAGGCTTCAAGAAC tgaaggtcttgtgcttgtaatgaagtatgactacactttttcctttttagATAGTGTTGAGGATGAGTTTGAACTCTCAATGATTTGCCACCGGCCAGAAAGTTTGGAACAACTGCAGAAACAAGCCAAGCTTTGCACGCAGAGAGTTGCAGGTCTTGTATAGAGGGTTCAAGAATgtactagggggatggaactagctgtgcagtagcctaacctccaagtttag Alignment from Pairagon ACAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAG-TTCACACGCAGAGAGTTGCAGGTCCTGTACAGAGGCTTCAAGAAC tgaaggtcttgtgcttgtaatgaagtatgactacactttttcctttttagATAGTGTTGAGGATGAGTTTGAACTCTCAATGATTTGCCACCGGCCAGAAAGTTTGGAACAACTGCAGAAACAAGCCAAGCTTTGCACGCAGAGAGTTGCAGGTCTTGTATAGAGGGTTCAAGAATgtactagggggatggaactagctgtgcagtagcctaacctccaagtttag Alignment from Exonerate_protein2genome ACAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAG-TTCACACGCAGAGAGTTGCAGGTCCTGTACAGAGGCTTCAAGAAC tgaaggtcttgtgcttgtaatgaagtatgactacactttttcctttttagATAGTGTTGAGGATGAGTTTGAACTCTCAATGATTTGCCACCGGCCAGAAAGTTTGGAACAACTGCAGAAACAAGCCAAGCTTTGCACGCAGAGAGTTGCAGGTCTTGTATAGAGGGTTCAAGAATgtactagggggatggaactagctgtgcagtagcctaacctccaagtttag Alignment from Exonerate_coding2genome ACAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACCAAG-TTCACACGCAGAGAGTTGCAGGTCCTGTACAGAGGCTTCAAGAAC tgaaggtcttgtgcttgtaatgaagtatgactacactttttcctttttagATAGTGTTGAGGATGAGTTTGAACTCTCAATGATTTGCCACCGGCCAGAAAGTTTGGAACAACTGCAGAAACAAGCCAAGCTTTGCACGCAGAGAGTTGCAGGTCTTGTATAGAGGGTTCAAGAATgtactagggggatggaactagctgtgcagtagcctaacctccaagtttag Alignment from GeneWise ACAGCGTGGAGGATGAGTTTGAACTATCCACGGTGTGCCACCGGCCTGAGGGTCTGGAACAACTCCAGGAACAAACC-AAGTTCACACGCAGAGAGTTGCAGGTCCTGTACAGAGGCTTCAAGAAC tgaaggtcttgtgcttgtaatgaagtatgactacactttttcctttttagATAGTGTTGAGGATGAGTTTGAACTCTCAATGATTTGCCACCGGCCAGAAAGTTTGGAACAACTGCAGAAACAAGCCAAGCTTTGCACGCAGAGAGTTGCAGGTCTTGTATAGAGGGTTCAAGAATgtactagggggatggaactagctgtgcagtagcctaacctccaagtttag #### Kdm2a_ID518_3 --> 2 - 2 Original Alignment atTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGA-GACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAaa agatgatccccaatctcaaaagtcttttctgacccggcctctccccccagacTTTAATGATGAATATCTACAACAGGGTGGGCTGAGACCACCCCCTTATCTTTAAGAATGCTGATGGACTTGGAATCaggtgagtactcgtgggtcacagccctgagataagccaggcatgcgagccac Alignment from CESAR atTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGA-GACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAaa agatgatccccaatctcaaaagtcttttctgacccggcctctccccccagacTTTAATGATGAATATCTACAACAGGGTGGGCTGAGACCACCCCCTTATCTTTAAGAATGCTGATGGACTTGGAATCaggtgagtactcgtgggtcacagccctgagataagccaggcatgcgagccac Alignment from Spaln_aa2Genome ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGA-GACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA agatgatccccaatctcaaaagtcttttctgacccggcctctccccccagACTTTAATGATGAATATCTACAACAGGGTGGGCTGAGAcCACCCCCTTATCTTTAAGAATGCTGATGGACTTGGAATCAGgtgagtactcgtgggtcacagccctgagataagccaggcatgcgagccac Alignment from Spaln_nt2Genome ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGAG-ACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA agatgatccccaatctcaaaagtcttttctgacccggcctctccccccagACTTTAATGATGAATATCTACAACAGGGTGGGCTGAGACCACCCCCTTATCTTTAAGAATGCTGATGGACTTGGAATCAGgtgagtactcgtgggtcacagccctgagataagccaggcatgcgagccac Alignment from Pairagon ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGA-GACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA agatgatccccaatctcaaaagtcttttctgacccggcctctccccccagACTTTAATGATGAATATCTACAACAGGGTGGGCTGAGACCACCCCCTTATCTTTAAGAATGCTGATGGACTTGGAATCAGgtgagtactcgtgggtcacagccctgagataagccaggcatgcgagccac Alignment from Exonerate_protein2genome ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGA-GACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA agatgatccccaatctcaaaagtcttttctgacccggcctctccccccagACTTTAATGATGAATATCTACAACAGGGTGGGCTGAGACCACCCCCTTATCTTTAAGAATGCTGATGGACTTGGAATCAGgtgagtactcgtgggtcacagccctgagataagccaggcatgcgagccac Alignment from Exonerate_coding2genome ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGA-GACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA agatgatccccaatctcaaaagtcttttctgacccggcctctccccccagACTTTAATGATGAATATCTACAACAGGGTGGGCTGAGACCACCCCCTTATCTTTAAGAATGCTGATGGACTTGGAATCAGgtgagtactcgtgggtcacagccctgagataagccaggcatgcgagccac Alignment from GeneWise ATTTTAATGTAGAGTATATCCAGCGGGGTGGCTTGAGA-GACCCTCTCATTTTCAAGAATTCTGATGGACTTGGAATAAA agatgatccccaatctcaaaagtcttttctgacccggcctctccccccagACTTTAATGATGAATATCTACAACAGGGTGGGCTGAGACCACCCCCTTATCTTTAAGAATGCTGATGGACTTGGAATCAGgtgagtactcgtgggtcacagccctgagataagccaggcatgcgagccac #### Kif11_ID7313_3 --> 0 - 2 Original Alignment GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAA-GTTATTATGGGCTATAATTGCACCATCTTCgc acaactatcaattgcttcacccgagtattcctttctctttcctttggtagGTTATTGGGGCATCTACAAAGCAGATTGATGTTTATCAAAGTGTTGTTTGTCCAATTCTAGATGATCGTAATTATGGGCTACAATTGCACCATTTCTgtgtgagtaacaactgtcttctcaagtttggatcatatgtatgggtattttt Alignment from CESAR GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAA-GTTATTATGGGCTATAATTGCACCATCTTCgc acaactatcaattgcttcacccgagtattcctttctctttcctttggtagGTTATTGGGGCATCTACAAAGCAGATTGATGTTTATCAAAGTGTTGTTTGTCCAATTCTAGATGATCGTAATTATGGGCTACAATTGCACCATTTCTgtgtgagtaacaactgtcttctcaagtttggatcatatgtatgggtattttt Alignment from Spaln_aa2Genome GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAA-GTTATTATGGGCTATAATTGCACCATCTTCGC acaactatcaattgcttcacccgagtattcctttctctttcctttggtagGTTATTGGGGCATCTACAAAGCAGATTGATGTTTATCAAAGTGTTGTTTGTCCAATTCTAGATGATcGTAATTATGGGCTACAATTGCACCATTTCTGTgtgagtaacaactgtcttctcaagtttggatcatatgtatgggtattttt Alignment from Spaln_nt2Genome GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAA-GTTATTATGGGCTATAATTGCACCATCTTCGC acaactatcaattgcttcacccgagtattcctttctctttcctttggtagGTTATTGGGGCATCTACAAAGCAGATTGATGTTTATCAAAGTGTTGTTTGTCCAATTCTAGATGATCGTAATTATGGGCTACAATTGCACCATTTCTGTgtgagtaacaactgtcttctcaagtttggatcatatgtatgggtattttt Alignment from Pairagon GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGA-AGTTATTATGGGCTATAATTGCACCATCTTCGC acaactatcaattgcttcacccgagtattcctttctctttcctttggtagGTTATTGGGGCATCTACAAAGCAGATTGATGTTTATCAAAGTGTTGTTTGTCCAATTCTAGATGATCGTAATTATGGGCTACAATTGCACCATTTCTGTgtgagtaacaactgtcttctcaagtttggatcatatgtatgggtattttt Alignment from Exonerate_protein2genome GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAA-GTTATTATGGGCTATAATTGCACCATCTTCGC acaactatcaattgcttcacccgagtattcctttctctttcctttggtagGTTATTGGGGCATCTACAAAGCAGATTGATGTTTATCAAAGTGTTGTTTGTCCAATTCTAGATGATCGTAATTATGGGCTACAATTGCACCATTTCTGTgtgagtaacaactgtcttctcaagtttggatcatatgtatgggtattttt Alignment from Exonerate_coding2genome GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGATGAA-GTTATTATGGGCTATAATTGCACCATCTTCGC acaactatcaattgcttcacccgagtattcctttctctttcctttggtagGTTATTGGGGCATCTACAAAGCAGATTGATGTTTATCAAAGTGTTGTTTGTCCAATTCTAGATGATCGTAATTATGGGCTACAATTGCACCATTTCTGTgtgagtaacaactgtcttctcaagtttggatcatatgtatgggtattttt Alignment from GeneWise GTGTTTGGAGCATCTACAAAACAAATTGATGTTTACCGAAGTGTTGTTTGTCCAATTCTAGAT-GAAGTTATTATGGGCTATAATTGCACCATCTTCGC acaactatcaattgcttcacccgagtattcctttctctttcctttggtagGTTATTGGGGCATCTACAAAGCAGATTGATGTTTATCAAAGTGTTGTTTGTCCAATTCTAGATGATCGTAATTATGGGCTACAATTGCACCATTTCTGTgtgagtaacaactgtcttctcaagtttggatcatatgtatgggtattttt #### Kif20b_ID6998_3 --> 0 - 0 Original Alignment GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAG-AAATTCAGTTTTTCTAAG tctgactataaacacattctctcattgggctacccttttcccgtgtgcag------GTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGACCCTCAGAGTATACTTGGTCACTTGAGTCAGAAAAGCTCTGGCCAGGTA---CAGCGAATTTAGTTTTTCTAAAgtagaaataagtacactggattgaccacattgaagcctctatcaagagaa Alignment from CESAR GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tctgactataaacacattctctcattgggctacccttttcccgtgtgcag------GTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGACCCTCAGAGTATACTTGGTCACTTGAGTCAGAAAAGCTCTGGCCAGGTACAG--CGAATTTAGTTTTTCTAAAgtagaaataagtacactggattgaccacattgaagcctctatcaagagaa Alignment from Spaln_aa2Genome GTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tctgactataaacacattctctcattgggctacccttttcccgtgtgcagGTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGACCCTCAGAGTATACTTGGTCACTTGAGTCAGAAAAGCTCTGGCCAGGTACAGCGAA--TTTAGTTTTTCTAAAgtagaaataagtacactggattgaccacattgaagcctctatcaagagaa Alignment from Spaln_nt2Genome GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGA-AATTCAGTTTTTCTAAG tctgactataaacacattctctcattgggctacccttttcccgtgtgcag------GTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGACCCTCAGAGTATACTTGGTCACTTGAGTCAGAAAAGCTCTGGCCAGGT---ACAGCGAATTTAGTTTTTCTAAAgtagaaataagtacactggattgaccacattgaagcctctatcaagagaa Alignment from Pairagon GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAG-AAATTCAGTTTTTCTAAG tctgactataaacacattctctcattgggctacccttttcccgtgtgcag------GTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGACCCTCAGAGTATACTTGGTCACTTGAGTCAGAAAAGCTCTGGCCAGGT---ACAGCGAATTTAGTTTTTCTAAAgtagaaataagtacactggattgaccacattgaagcctctatcaagagaa Alignment from Exonerate_protein2genome GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAA-TTCAGTTTTTCTAAG tctgactataaacacattctctcattgggctacccttttcccgtGTGCAGGTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGACCCTCAGAGTATACTTGGTCACTTGAGTCAGAAAAGCTCTGGCCAGGTA---CAGCGAATTTAGTTTTTCTAAAgtagaaataagtacactggattgaccacattgaagcctctatcaagagaa Alignment from Exonerate_coding2genome GGCTGTGTGCAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAA-TTCAGTTTTTCTAAG tctgactataaacacattctctcattgggctacccttttcccgtGTGCAGGTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGACCCTCAGAGTATACTTGGTCACTTGAGTCAGAAAAGCTCTGGCCAGGTA---CAGCGAATTTAGTTTTTCTAAAgtagaaataagtacactggattgaccacattgaagcctctatcaagagaa Alignment from GeneWise ---CAAGTTTTGGATTCACAGTCTGTTCTGCTGAAAGACCCTCAAAGCATCCTTGGCCACTTAAGTGAGAAGAGCTCTGGACAGGTGGCACAGAAATTCAGTTTTTCTAAG tctgactataaacacattctctcattgggctacccttttcccgtgtgcagGTGCAAATTTTGGATTCACACTCTGTTTTGCTGGAAGACCCTCAGAGTATACTTGGTCACTTGAGTCAGAAAAGCTCTGGCCAGGTAC--AGCGAATTTAGTTTTTCTAAAgtagaaataagtacactggattgaccacattgaagcctctatcaagagaa #### Kif20b_ID7002_7 --> 2 - 1 Original Alignment gaCACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAG-AGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAg agcaaaatgacaggattgcagttaaagttgtatatgtaaacaatttaaagggCACTTTACAAACTCTCTAACTATCCCAGAGTTCGAAGAACCTGTGAACAGG---------TCCAGTTTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCTTTCTTTGAAATTTACAACAAAAGCATTTAC---TTGTTTGTGCCTGTGTCCTCTAAGTTTCAAAAGCAGAAAAATGTTGCGAATTTCCCAGGACATAAAGGGGTATTCTTTTATAAAAggtgaagtagtgaccatcttgttaaagaaggagcatactttccaactattt Alignment from CESAR gaCACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAG-AGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAg agcaaaatgacaggattgcagttaaagttgtatatgtaaacaatttaaagggCACTTTACAAACTCTCTAACTATCCCAGAGTTCGAAGAACCTGTGAAC---------AGGTCCAGTTTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCTTTCTTTGAAATTTACAACAAAAGCATTTAC---TTGTTTGTGCCTGTGTCCTCTAAGTTTCAAAAGCAGAAAAATGTTGCGAATTTCCCAGGACATAAAGGGGTATTCTTTTATAAAAggtgaagtagtgaccatcttgttaaagaaggagcatactttccaactattt Alignment from Spaln_aa2Genome GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAGAGA-AAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG agcaaaatgacaggattgcagttaaagttgtatatgtaaacaatttaaagGGCACTTTACAAACTCTCTAACTATCCCAGAGTTCGAAGAACCTGTGAAC---------AGGTCCAGTTTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCTTTCTTTGAAATTTACAACAAAAGCATTTAC---TTGTTTGTGCCTGTGTCCTCTAAGTTTCAAAAGCAGaAAAATGTTGCGAATTTCCCAGGACATAAAGGGGTATTCTTTTATAAAAGgtgaagtagtgaccatcttgttaaagaaggagcatactttccaactattt Alignment from Spaln_nt2Genome GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTC-AAAAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG agcaaaatgacaggattgcagttaaagttgtatatgtaaacaatttaaagGGCACTTTACAAACTCTCTAACTATCCCAGAGTTCGAAGAACCTGTGAACAG---------GTCCAGTTTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCTTTCTTTGAAATTTACAACAAAAGCATTTAC---TTGTTTGTGCCTGTGTCCTCTAAGTTTCAAAAGCAGAAAAATGTTGCGAATTTCCCAGGACATAAAGGGGTATTCTTTTATAAAAGgtgaagtagtgaccatcttgttaaagaaggagcatactttccaactattt Alignment from Pairagon GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAG-AGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG agcaaaatgacaggattgcagttaaagttgtatatgtaaacaatttaaagGGCACTTTACAAACTCTCTAACTATCCCAGAGTTCGAAGAACCTGTGAACAG---------GTCCAGTTTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCTTTCTTTGAAATTTACAACAAAAGCATTTAC---TTGTTTGTGCCTGTGTCCTCTAAGTTTCAAAAGCAGAAAAATGTTGCGAATTTCCCAGGACATAAAGGGGTATTCTTTTATAAAAGgtgaagtagtgaccatcttgttaaagaaggagcatactttccaactattt Alignment from Exonerate_protein2genome GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAG-AGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG agcaaaatgacaggattgcagttaaagttgtatatgtaaacaatttaaagGGCACTTTACAAACTCTCTAACTATCCCAGAGTTCGAAGAACCTGTGAAC---------AGGTCCAGTTTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCTTTCTTTGAAATTTACAACAAAAGCATTTAC---TTGTTTGTGCCTGTGTCCTCTAAGTTTCAAAAGCAGAAAAATGTTGCGAATTTCCCAGGACATAAAGGGGTATTCTTTTATAAAAGgtgaagtagtgaccatcttgttaaagaaggagcatactttccaactattt Alignment from Exonerate_coding2genome GTTACCATACATAATGACAGTTATGACGTTCTTTGTGGACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAAAAG-AGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG agcaaaatgacagGATTGCAGTTAAAGTTGTATATGTAAACAATTTAAAGGGCACTTTACAAACTCTCTAACTATCCCAGAGTTCGAAGAACCTGTGAAC---------AGGTCCAGTTTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCTTTCTTTGAAATTTACAACAAAAGCATTTAC---TTGTTTGTGCCTGTGTCCTCTAAGTTTCAAAAGCAGAAAAATGTTGCGAATTTCCCAGGACATAAAGGGGTATTCTTTTATAAAAGgtgaagtagtgaccatcttgttaaagaaggagcatactttccaactattt Alignment from GeneWise GACACTTAACAAACTCTTTGACTATCCCAGAATTTGAAGAATCCGTGAACAGTTGTGACCAGTCCAGTCTGAATGTGGATAATATAAAGTATTCTGTGTGGGTTTCTTTCTTTGAAATTTACAATGAAAGTATTTACGATTTGTTTGTTCCTGTGTCCTCTAAGTTTCAA-AAGAGAAAAATGTTACGACTTTCCCAAGATATAAAGGGCTATTCTTTTATAAAAG agcaaaatgacaggattgcagttaaagttgtatatgtaaacaatttaaagGGCACTTTACAAACTCTCTAACTATCCCAGAGTTCGAAGAACCTGTGAAC---------AGGTCCAGTTTAAATGTGGATAATATAAAGTATTCTGTGTGGGTCTCTTTCTTTGAAATTTACAACAAAAGCATTTAC---TTGTTTGTGCCTGTGTCCTCTAAGTTTCAAAAGCAGAAAAATGTTGCGAATTTCCCAGGACATAAAGGGGTATTCTTTTATAAAAGgtgaagtagtgaccatcttgttaaagaaggagcatactttccaactattt #### Klc2_ID852_14 --> 1 - 0 Original Alignment gATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAG-AGTGTGGAAGAGCCAGTCCAG tctcttttgctctcaggatgaagagggccttttcatttgtttatttgtaggATGAAGAGGGCCAGCTCTCTTAACTTCCTTAATAAGCAGTGTGCGGAAGCCC---CAGgtactgatggggataaaatgtaccaaatagcctatatttgcagatgcagc Alignment from CESAR gATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAG-AGTGTGGAAGAGCCAGTCCAG tctcttttgctctcaggatgaagagggccttttcatttgtttatttgtaggATGAAGAGGGCCAGCTCTCTTAACTTCCTTAATAAGCAGTGTGCGGAAGCCC---CAGgtactgatggggataaaatgtaccaaatagcctatatttgcagatgcagc Alignment from Spaln_aa2Genome GATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAG tctcttttgctctcaggatgaagagggccttttcatttgtttatttgtagGATGAAGAGGGCCAGCTCTCTTAACTTCCTTAATAAGCAgtgtgcggaagccccaggtactgatggggataaaatgtaccaaatagcctatatttgcagatgcagc Alignment from Spaln_nt2Genome GATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAG-AGTGTGGAAGAGCCAGTCCAG tctcttttgctctcaggatgaagagggccttttcatttgtttatttgtagGATGAAGAGGGCCAGCTCTCTTAACTTCCTTAATAAGCAGTGTGCGGAAGCC---CCAGgtactgatggggataaaatgtaccaaatagcctatatttgcagatgcagc Alignment from Pairagon GATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGA---GTGTGGAAGAGCCAG tctcttttgctctcaggatgaagagggccttttcatttgtttatttgtagGATGAAGAGGGCCAGCTCTCTTAACTTCCTTAATAAGCAGTGTGCGGAAGCCCCAGgtactgatggggataaaatgtaccaaatagcctatatttgcagatgcagc Alignment from Exonerate_protein2genome GATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGT---GTGGAAGAGCCAG tctcttttgctctcaggatgaagagggccttttcatttgtttatttgtagGATGAAGAGGGCCAGCTCTCTTAACTTCCTTAATAAGCAGTGTGCGGAAGCCCCAGgtactgatggggataaaatgtaccaaatagcctatatttgcagatgcagc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GATGAAGAGGGCCAGCTCTCTTAACTTCCTTAACAAGAGT- tctcttttgctctcaggatgaagagggccttttcatttgtttatttgtagGATGAAGAGGGCCAGCTCTCTTAACTTCCTTAATAAGCAGTgtgcggaagccccaggtactgatggggataaaatgtaccaaatagcctatatttgcagatgcagc #### Klc2_ID854_12 --> 0 - 0 Original Alignment GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAA-CTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gccacgatctcatgtatacttttgctggtatttacccttcccctttttagGGTCTAGATCCTGCTAGTCAGACGAAGGTGGTCGAACCTGTTAAAGGATGGCAGCAGTGGACACAGCCATTGCCGGGGTAGTAGAGATGTGATTGGGCCT---CCTGAACTAGACTTGGAAGAGTCAGAGCCCGCAGCTCACTGGAGTGGAgtatgagcgtaaccagaggtgataggtgaatccatcttgagtcaattcta Alignment from CESAR GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAA-CTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gccacgatctcatgtatacttttgctggtatttacccttcccctttttagGGTCTAGATCCTGCTAGTCAGACGAAGGTGGTCGAACCTGTTAAAGGATGGCAGCAGTGGACACAGCCATTGCCGGGGTAGTAGAGATGTGATTGGGCCT---CCTGAACTAGACTTGGAAGAGTCAGAGCCCGCAGCTCACTGGAGTGGAgtatgagcgtaaccagaggtgataggtgaatccatcttgagtcaactgat Alignment from Spaln_aa2Genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAA-CTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gccacgatctcatgtatacttttgctggtatttacccttcccctttttagGGTCTAGATCCTGCTAGTCAGACGAAGGTGGTCGAAcCTGTTAAAGGATGGCAGCAGTGGACACAGCCATTGCCGGGGTAGTAGAGATGTGATTGGGCCT---CCTGAACTAGACTTGGAAGAGTCAGAGCCCGCAGCTCACTGGAGTGGAgtatgagcgtaaccagaggtgataggtgaatccatcttgagtcaattcta Alignment from Spaln_nt2Genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAA-CTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gccacgatctcatgtatacttttgctggtatttacccttcccctttttagGGTCTAGATCCTGCTAGTCAGACGAAGGTGGTCGAACCTGTTAAAGGATGGCAGCAGTGGACACAGCCATTGCCGGGGTAGTAGAGATGTGATTGGGCCTC---CTGAACTAGACTTGGAAGAGTCAGAGCCCGCAGCTCACTGGAGTGGAgtatgagcgtaaccagaggtgataggtgaatccatcttgagtcaattcta Alignment from Pairagon GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAA-CTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gccacgatctcatgtatacttttgctggtatttacccttcccctttttagGGTCTAGATCCTGCTAGTCAGACGAAGGTGGTCGAACCTGTTAAAGGATGGCAGCAGTGGACACAGCCATTGCCGGGGTAGTAGAGATGTGATTGGGCCTC---CTGAACTAGACTTGGAAGAGTCAGAGCCCGCAGCTCACTGGAGTGGAgtatgagcgtaaccagaggtgataggtgaatccatcttgagtcaattcta Alignment from Exonerate_protein2genome GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAA-CTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gccacgatctcatgtatacttttgctggtatttacccttcccctttttagGGTCTAGATCCTGCTAGTCAGACGAAGGTGGTCGAACCTGTTAAAGGATGGCAGCAGTGGACACAGCCATTGCCGGGGTAGTAGAGATGTGATTGGGCCT---CCTGAACTAGACTTGGAAGAGTCAGAGCCCGCAGCTCACTGGAGTGGAgtatgagcgtaaccagaggtgataggtgaatccatcttgagtcaattcta Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGCCTGGATCCTGCCAGCCAGACCAAGGTGGTAGAA-CTGTTAAAAGATGGCAGTGGTGGACGAGGACACCGCCGTGGCAGCAGAGATGTGGCTGGGCCTCAATCTGAGTCGGACCTGGAGGAGTCAGGGCCTGCAGCTGAGTGGAGTGGG gccacgatctcatgtatacttttgctggtatttacccttcccctttttagGGTCTAGATCCTGCTAGTCAGACGAAGGTGGTCGAACCTGTTAAAGGATGGCAGCAGTGGACACAGCCATTGCCGGGGTAGTAGAGATGTGATTGGGCCTCCT---GAACTAGACTTGGAAGAGTCAGAGCCCGCAGCTCACTGGAGTGGAgtatgagcgtaaccagaggtgataggtgaatccatcttgagtcaattcta #### Klc2_ID855_11 --> 1 - 0 Original Alignment tCCCACAGTCAAC-ACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tggaggggaagaccccggaatttacaattctgtaactgtttttcctccagcCCTACGGTCAATCACCAGATTGCGAAGCTTGGGTACCCTGTACTGGCATGAAGGCAAACTGGAAGCTACACACACACTGGAAGATTGTGCAAGCCGCAGCTGCAAACAAgtaggtctttcatcattgaggacagaaagtagggccacgatctcatgtat Alignment from CESAR tCCCACAGTCAAC-ACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tggaggggaagaccccggaatttacaattctgtaactgtttttcctccagcCCTACGGTCAATCACCAGATTGCGAAGCTTGGGTACCCTGTACTGGCATGAAGGCAAACTGGAAGCTACACACACACTGGAAGATTGTGCAAGCCGCAGCTGCAAACAAgtaggtctttcatcattgaggacagaaagtagggccacgatctcatgtat Alignment from Spaln_aa2Genome TCCCACAGTCAAC-ACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tggaggggaagaccccggaatttacaattctgtaactgtttttcctccagCCCTACGGTCAATcACCAGATTGCGAAGCTTGGGTACCCTGTACTGGCATGAAGGCAAACTGGAAGCTACACACACACTGGAAGATTGTGCAAGCCGCAGCTGCAAACAAgtaggtctttcatcattgaggacagaaagtagggccacgatctcatgtat Alignment from Spaln_nt2Genome TCCCACAGTCAA-CACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tggaggggaagaccccggaatttacaattctgtaactgtttttcctccagCCCTACGGTCAATCACCAGATTGCGAAGCTTGGGTACCCTGTACTGGCATGAAGGCAAACTGGAAGCTACACACACACTGGAAGATTGTGCAAGCCGCAGCTGCAAACAAgtaggtctttcatcattgaggacagaaagtagggccacgatctcatgtat Alignment from Pairagon TCCCACAGTCAA-CACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tggaggggaagaccccggaatttacaattctgtaactgtttttcctccagCCCTACGGTCAATCACCAGATTGCGAAGCTTGGGTACCCTGTACTGGCATGAAGGCAAACTGGAAGCTACACACACACTGGAAGATTGTGCAAGCCGCAGCTGCAAACAAgtaggtctttcatcattgaggacagaaagtagggccacgatctcatgtat Alignment from Exonerate_protein2genome TCCCACAGTCAAC-ACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tggaggggaagaccccggaatttacaattctgtaactgtttttcctccagCCCTACGGTCAATCACCAGATTGCGAAGCTTGGGTACCCTGTACTGGCATGAAGGCAAACTGGAAGCTACACACACACTGGAAGATTGTGCAAGCCGCAGCTGCAAACAAgtaggtctttcatcattgaggacagaaagtagggccacgatctcatgtat Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TCCCACAGTCAAC-ACCACTCTGCGAAGCTTGGGCGCCCTGTACCGGCGCCAGGGCAAGCTGGAAGCCGCACACACACTGGAAGACTGTGCCAGCCGCAGCCGCAAACAG tggaggggaagaccccggaatttacaattctgtaactgtttttcctccagCCCTACGGTCAATCACCAGATTGCGAAGCTTGGGTACCCTGTACTGGCATGAAGGCAAACTGGAAGCTACACACACACTGGAAGATTGTGCAAGCCGCAGCTGCAAACAAgtaggtctttcatcattgaggacagaaagtagggccacgatctcatgtat #### Klc2_ID861_5 --> 1 - 0 Original Alignment gGACCAGAATAAGTAC-AAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT ccaccagggtcatgctttgttgagggggcatggtctgttttgtgtcctagaGACCAGAATAAATACCAGGGATGCTGCTCATCTACTCAATGATGCCCTGGCTATCCGAGAAAAGACACTGGGCAAGGATCAGCCAGCTgtatggtgtctaagtagtccccctgtcctattaccagagcttccagtccc Alignment from CESAR gGACCAGAATAAGTAC-AAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT ccaccagggtcatgctttgttgagggggcatggtctgttttgtgtcctagaGACCAGAATAAATACCAGGGATGCTGCTCATCTACTCAATGATGCCCTGGCTATCCGAGAAAAGACACTGGGCAAGGATCAGCCAGCTgtatggtgtctaagtagtccccctgtcctattaccagagcttccagtccc Alignment from Spaln_aa2Genome GGACCAGAATAAGTAC-AAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT ccaccagggtcatgctttgttgagggggcatggtctgttttgtgtcctagAGACCAGAATAAATACcAGGGATGCTGCTCATCTACTCAATGATGCCCTGGCTATCCGAGAAAAGACACTGGGCAAGGATCAGCCAGCTgtatggtgtctaagtagtccccctgtcctattaccagagcttccagtccc Alignment from Spaln_nt2Genome GGACCAGAATAAGTACAAGG-ATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT ccaccagggtcatgctttgttgagggggcatggtctgttttgtgtcctagAGACCAGAATAAATACCAGGGATGCTGCTCATCTACTCAATGATGCCCTGGCTATCCGAGAAAAGACACTGGGCAAGGATCAGCCAGCTgtatggtgtctaagtagtccccctgtcctattaccagagcttccagtccc Alignment from Pairagon GGACCAGAATAAGTA-CAAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCT ccaccagggtcatgctttgttgagggggcatggtctgttttgtgtcctagAGACCAGAATAAATACCAGGGATGCTGCTCATCTACTCAATGATGCCCTGGCTATCCGAGAAAAGACACTGGGCAAGGATCAGCCAGCTgtatggtgtctaagtagtccccctgtcctattaccagagcttccagtccc Alignment from Exonerate_protein2genome GGACCAGAATAAGTAC-AAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCTGTGGC ccaccagggtcatgctttgttgagggggcatggtctgttttgtgtcctagAGACCAGAATAAATACCAGGGATGCTGCTCATCTACTCAATGATGCCCTGGCTATCCGAGAAAAGACACTGGGCAAGGATCAGCCAGCTGTATGgtgtctaagtagtccccctgtcctattaccagagcttccagtccc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGACCAGAATAAGTAC-AAGGATGCTGCTCACCTGCTCAATGATGCCCTGGCTATCCGGGAAAAGACACTGGGCAAGGACCACCCAGCTGTGGCTGCGACC- ccaccagggtcatgctttgttgagggggcatggtctgttttgtgtcctagAGACCAGAATAAATACCAGGGATGCTGCTCATCTACTCAATGATGCCCTGGCTATCCGAGAAAAGACACTGGGCAAGGATCAGCCAGCTGTATGGTGTCTAAgtagtccccctgtcctattaccagagcttccagtccc #### Ldb1_ID9694_6 --> 2 - 0 Original Alignment ccATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTC-GACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG ttcacatgtgacctctcctggtcctgaattaagttctgtgtcttggccagccATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTTGTGTCCCTTCGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCAAACCCATGTTTACCCAGgtaagaaagctgtaggcacagtgaaacctgatatcatgacacaattttgc Alignment from CESAR ccATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTC-GACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG ttcacatgtgacctctcctggtcctgaattaagttctgtgtcttggccagccATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTTGTGTCCCTTCGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCAAACCCATGTTTACCCAGgtaagaaagctgtaggcacagtgaaacctgatatcatgacacaattttgc Alignment from Spaln_aa2Genome CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTC-GACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG ttcacatgtgacctctcctggtcctgaattaagttctgtgtcttggccagCCATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTTGTGTCCCTTcGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCAAACCCATGTTTACCCAGgtaagaaagctgtaggcacagtgaaacctgatatcatgacacaattttgc Alignment from Spaln_nt2Genome CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCT-CGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG ttcacatgtgacctctcctggtcctgaattaagttctgtgtcttggccagCCATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTTGTGTCCCTTCGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCAAACCCATGTTTACCCAGgtaagaaagctgtaggcacagtgaaacctgatatcatgacacaattttgc Alignment from Pairagon CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCC-TCGACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG ttcacatgtgacctctcctggtcctgaattaagttctgtgtcttggccagCCATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTTGTGTCCCTTCGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCAAACCCATGTTTACCCAGgtaagaaagctgtaggcacagtgaaacctgatatcatgacacaattttgc Alignment from Exonerate_protein2genome CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTC-GACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG ttcacatgtgacctctcctggtcctgaattaagttctgtgtcttggccagCCATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTTGTGTCCCTTCGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCAAACCCATGTTTACCCAGgtaagaaagctgtaggcacagtgaaacctgatatcatgacacaattttgc Alignment from Exonerate_coding2genome CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTC-GACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG ttcacatgtgacctctcctggtcctgaattaagttctgtgtcttggccagCCATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTTGTGTCCCTTCGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCAAACCCATGTTTACCCAGgtaagaaagctgtaggcacagtgaaacctgatatcatgacacaattttgc Alignment from GeneWise CCATTGGCCGGACCCTGATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGCTGTACTACGTGCTCAAGCACCCCAAGGAGGCATTCCACAGCAACTTCGTGTCCCTC-GACTGTGACCAGGGCAGCATGGTGACCCAGCACGGCAAACCCATGTTTACCCAG ttcacatgtgacctctcctggtcctgaattaagttctgtgtcttggccagCCATTGGCCGGACCCTAATACCACGCTACTTCCGAAGCATTTTTGAGGGGGGTGCCACAGAGTTGTACTACGTGCTCAAGCACCCTAAGGAGGCATTCCACAGCAACTTTGTGTCCCTTCGAATGTGATGAGGGCAGCATGGTGACCCAGCATGGCAAACCCATGTTTACCCAGgtaagaaagctgtaggcacagtgaaacctgatatcatgacacaattttgc #### Ldb1_ID9696_4 --> 1 - 0 Original Alignment gAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGG-CTACAGAACTGGACAGAG ggctacatatgccagcacatctatttctaaggtcagtgtttacctttcaggAGGCACAGTCCATATGGTAATCAAACTGACTATAGGATATTTGAGCTTAACAAGCGGCCTACAGAATTGGACAGAAgtaaggcaggaagagaggttgagaggggagtgcctggggacacgttctgc Alignment from CESAR gAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGG-CTACAGAACTGGACAGAG ggctacatatgccagcacatctatttctaaggtcagtgtttacctttcaggAGGCACAGTCCATATGGTAATCAAACTGACTATAGGATATTTGAGCTTAACAAGCGGCCTACAGAATTGGACAGAAgtaaggcaggaagagaggttgagaggggagtgcctggggtttctttctct Alignment from Spaln_aa2Genome GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGG-CTACAGAACTGGACAGAG ggctacatatgccagcacatctatttctaaggtcagtgtttacctttcagGAGGCACAGTCCATATGGTAATCAAACTGACTATAGGATATTTGAGCTTAACAAGCGGcCTACAGAATTGGACAGAAgtaaggcaggaagagaggttgagaggggagtgcctggggacacgttctgc Alignment from Spaln_nt2Genome GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGGC-TACAGAACTGGACAGAG ggctacatatgccagcacatctatttctaaggtcagtgtttacctttcagGAGGCACAGTCCATATGGTAATCAAACTGACTATAGGATATTTGAGCTTAACAAGCGGCCTACAGAATTGGACAGAAgtaaggcaggaagagaggttgagaggggagtgcctggggacacgttctgc Alignment from Pairagon GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGG-CTACAGAACTGGACAGAG ggctacatatgccagcacatctatttctaaggtcagtgtttacctttcagGAGGCACAGTCCATATGGTAATCAAACTGACTATAGGATATTTGAGCTTAACAAGCGGCCTACAGAATTGGACAGAAgtaaggcaggaagagaggttgagaggggagtgcctggggacacgttctgc Alignment from Exonerate_protein2genome GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGG-CTACAGAACTGGACAGAG ggctacatatgccagcacatctatttctaaggtcagtgtttacctttcagGAGGCACAGTCCATATGGTAATCAAACTGACTATAGGATATTTGAGCTTAACAAGCGGCCTACAGAATTGGACAGAAgtaaggcaggaagagaggttgagaggggagtgcctggggacacgttctgc Alignment from Exonerate_coding2genome GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGG-CTACAGAACTGGACAGAG ggctacatatgccagcacatctatttctaaggtcagtgtttacctttcagGAGGCACAGTCCATATGGTAATCAAACTGACTATAGGATATTTGAGCTTAACAAGCGGCCTACAGAATTGGACAGAAgtaaggcaggaagagaggttgagaggggagtgcctggggacacgttctgc Alignment from GeneWise GAGGCACACACCATATGGTAACCAAACCGACTATAGAATATTTGAGCTTAACAAACGG-CTACAGAACTGGACAGAG ggctacatatgccagcacatctatttctaaggtcagtgtttacctttcagGAGGCACAGTCCATATGGTAATCAAACTGACTATAGGATATTTGAGCTTAACAAGCGGCCTACAGAATTGGACAGAAgtaaggcaggaagagaggttgagaggggagtgcctggggacacgttctgc #### Lipa_ID6938_5 --> 2 - 0 Original Alignment gtTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTG-CCAGACCCTCTTCTCAAG ttgatggaaacctgttcaagctcaggtcagctcgtgaaattttgcctcaggtTTTATAGCTTTTTCACAAATGCCTGAGTTAGCCAAGAAGATCAAAATGTTTTTAGCCTTGTCTCCAGTGTTGTCTCTCAATTTTGCTTCCGGTCCACTATTGCAATTGGGACACTTGCCCTGATCCACTGCTCAAAgtaactggtttgacattttgtagatttaatagtctatttgaggtgcctca Alignment from CESAR gtTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTG-CCAGACCCTCTTCTCAAG ttgatggaaacctgttcaagctcaggtcagctcgtgaaattttgcctcaggtTTTATAGCTTTTTCACAAATGCCTGAGTTAGCCAAGAAGATCAAAATGTTTTTAGCCTTGTCTCCAGTGTTGTCTCTCAATTTTGCTTCCGGTCCACTATTGCAATTGGGACACTTGCCCTGATCCACTGCTCAAAgtaactggtttgacattttgtagatttaatagtctatttgaggtgcctca Alignment from Spaln_aa2Genome GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTG-CCAGACCCTCTTCTCAAG ttgatggaaacctgttcaagctcaggtcagctcgtgaaattttgcctcagGTTTTATAGCTTTTTCACAAATGCCTGAGTTAGCCAAGAAGATCAAAATGTTTTTAGCCTTGTCTCCAGTGTTGTCTCTCAATTTTGCTTCCGGTCCACTATTGCAATTGGGACACTTGcCCTGATCCACTGCTCAAAgtaactggtttgacattttgtagatttaatagtctatttgaggtgcctca Alignment from Spaln_nt2Genome GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCA-GACCCTCTTCTCAAG ttgatggaaacctgttcaagctcaggtcagctcgtgaaattttgcctcagGTTTTATAGCTTTTTCACAAATGCCTGAGTTAGCCAAGAAGATCAAAATGTTTTTAGCCTTGTCTCCAGTGTTGTCTCTCAATTTTGCTTCCGGTCCACTATTGCAATTGGGACACTTGCCCTGATCCACTGCTCAAAgtaactggtttgacattttgtagatttaatagtctatttgaggtgcctca Alignment from Pairagon GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTGCCA-GACCCTCTTCTCAAG ttgatggaaacctgttcaagctcaggtcagctcgtgaaattttgcctcagGTTTTATAGCTTTTTCACAAATGCCTGAGTTAGCCAAGAAGATCAAAATGTTTTTAGCCTTGTCTCCAGTGTTGTCTCTCAATTTTGCTTCCGGTCCACTATTGCAATTGGGACACTTGCCCTGATCCACTGCTCAAAgtaactggtttgacattttgtagatttaatagtctatttgaggtgcctca Alignment from Exonerate_protein2genome GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTG-CCAGACCCTCTTCTCAAG ttgatggaaacctgttcaagctcaggtcagctcgtgaaattttgcctcagGTTTTATAGCTTTTTCACAAATGCCTGAGTTAGCCAAGAAGATCAAAATGTTTTTAGCCTTGTCTCCAGTGTTGTCTCTCAATTTTGCTTCCGGTCCACTATTGCAATTGGGACACTTGCCCTGATCCACTGCTCAAAgtaactggtttgacattttgtagatttaatagtctatttgaggtgcctca Alignment from Exonerate_coding2genome GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCTTG-CCAGACCCTCTTCTCAAG ttgatggaaacctgttcaagctcaggtcagctcgtgaaattttgcctcagGTTTTATAGCTTTTTCACAAATGCCTGAGTTAGCCAAGAAGATCAAAATGTTTTTAGCCTTGTCTCCAGTGTTGTCTCTCAATTTTGCTTCCGGTCCACTATTGCAATTGGGACACTTGCCCTGATCCACTGCTCAAAgtaactggtttgacattttgtagatttaatagtctatttgaggtgcctca Alignment from GeneWise GTTTCATAGCTTTTTCACAGATGCCTGAGTTGGCAAAGAAGATTAAAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGC-TTGCCAGACCCTCTTCTCAAG ttgatggaaacctgttcaagctcaggtcagctcgtgaaattttgcctcagGTTTTATAGCTTTTTCACAAATGCCTGAGTTAGCCAAGAAGATCAAAATGTTTTTAGCCTTGTCTCCAGTGTTGTCTCTCAATTTTGCTTCCGGTCCACTATTGCAATTGGGACACTTGCCCTGATCCACTGCTCAAAgtaactggtttgacattttgtagatttaatagtctatttgaggtgcctca #### Lipf_ID6846_2 --> 0 - 1 Original Alignment AGTCAGATGATAACTTACTGG-GGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCg aagttagtcctctcctcatactgttatttgttgcgtgtctctgtgcacagAGTCAAATGGTAACTTATTGGCGGATATCCAAGTGAAGAATATGAAGGGGTATCTGAAGATGGATACATTCTGGGGGTCTATAGAATTCCATATAGCAAGAGAAACTCTGAAAACATAggtaggtacatcatgtgtttgggaagaaaaatcctgagcaggccaatccac Alignment from CESAR AGTCAGATGATAACTTACTGG-GGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCg aagttagtcctctcctcatactgttatttgttgcgtgtctctgtgcacagAGTCAAATGGTAACTTATTGGCGGATATCCAAGTGAAGAATATGAAGGGGTATCTGAAGATGGATACATTCTGGGGGTCTATAGAATTCCATATAGCAAGAGAAACTCTGAAAACATAggtaggtacatcatgtgtttgggaagaaaaatcctgagcaggccaatccac Alignment from Spaln_aa2Genome AGTCAGATGATAACTTACTGG-GGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCG aagttagtcctctcctcatactgttatttgttgcgtgtctctgtgcacagAGTCAAATGGTAACTTATTGGcGGATATCCAAGTGAAGAATATGAAGGGGTATCTGAAGATGGATACATTCTGGGGGTCTATAGAATTCCATATAGCAAGAGAAACTCTGAAAACATAGgtaggtacatcatgtgtttgggaagaaaaatcctgagcaggccaatccac Alignment from Spaln_nt2Genome AGTCAGATGATAACTTACTGG-GGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTA--------------------------------------------TGGGAAGAAAAATTCTGAGAATATCG aagttagtcctctcctcatactgttatttgttgcgtgtctctgtgcacagAGTCAAATGGTAACTTATTGGCGGATATCCAAGTGAAGAATATGAAGGGGTATCTGAAGATGGATACATTCTGGGGGTCTATAGAATTCCATATAGCAAGAGAAACTCTGAAAACATAGGTAGGTACATCATGTGTTTGGGAAGAAAAATCCTGAGCA----Ggccaat Alignment from Pairagon AGTCAGATGATAACTTACTGG-GGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCG aagttagtcctctcctcatactgttatttgttgcgtgtctctgtgcacagAGTCAAATGGTAACTTATTGGCGGATATCCAAGTGAAGAATATGAAGGGGTATCTGAAGATGGATACATTCTGGGGGTCTATAGAATTCCATATAGCAAGAGAAACTCTGAAAACATAGgtaggtacatcatgtgtttgggaagaaaaatcctgagcaggccaatccac Alignment from Exonerate_protein2genome AGTCAGATGATAACTTACTGG-GGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCG aagttagtcctctcctcatactgttatttgttgcgtgtctctgtgcacagAGTCAAATGGTAACTTATTGGCGGATATCCAAGTGAAGAATATGAAGGGGTATCTGAAGATGGATACATTCTGGGGGTCTATAGAATTCCATATAGCAAGAGAAACTCTGAAAACATAGgtaggtacatcatgtgtttgggaagaaaaatcctgagcaggccaatccac Alignment from Exonerate_coding2genome AGTCAGATGATAACTTACTGG-GGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCG aagttagtcctctcctcatactgttatttgttgcgtgtctctgtgcacagAGTCAAATGGTAACTTATTGGCGGATATCCAAGTGAAGAATATGAAGGGGTATCTGAAGATGGATACATTCTGGGGGTCTATAGAATTCCATATAGCAAGAGAAACTCTGAAAACATAGgtaggtacatcatgtgtttgggaagaaaaatcctgagcaggccaatccac Alignment from GeneWise AGTCAGATGATAACTTACTGG-GGATATCCAAGTGAGGAATATGAAGTTGTTACTGAAGATGGCTACATTCTGGGGGTCTATAGAATTCCTTATGGGAAGAAAAATTCTGAGAATATCG aagttagtcctctcctcatactgttatttgttgcgtgtctctgtgcacagAGTCAAATGGTAACTTATTGGCGGATATCCAAGTGAAGAATATGAAGGGGTATCTGAAGATGGATACATTCTGGGGGTCTATAGAATTCCATATAGCAAGAGAAACTCTGAAAACATAGgtaggtacatcatgtgtttgggaagaaaaatcctgagcaggccaatccac #### Lipo1_ID6825_8 --> 0 - 0 Original Alignment GTAGGAAGAAGTGGTATA-CTTCAGGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG tcacctggcagcctgtaaatgggcatggtgagggtcttgttttgtttcagGTAGGTAGAAGTGGTATTCCTTCAAGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACAGTTCAATCAAgtaaggctctttctccacacttaatgatagggttcaagttggaaggactt Alignment from CESAR GTAGGAAGAAGTGGTATA-CTTCAGGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG tcacctggcagcctgtaaatgggcatggtgagggtcttgttttgtttcagGTAGGTAGAAGTGGTATTCCTTCAAGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACAGTTCAATCAAgtaaggctctttctccacacttaatgatagggttcaagttggaaggactt Alignment from Spaln_aa2Genome GTAGGAAGAAGTGGTATA-CTTCAGGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG tcacctggcagcctgtaaatgggcatggtgagggtcttgttttgtttcagGTAGGTAGAAGTGGTATTcCTTCAAGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACAGTTCAATCAAgtaaggctctttctccacacttaatgatagggttcaagttggaaggactt Alignment from Spaln_nt2Genome GTAGGAAGAAGTGGTATAC-TTCAGGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG tcacctggcagcctgtaaatgggcatggtgagggtcttgttttgtttcagGTAGGTAGAAGTGGTATTCCTTCAAGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACAGTTCAATCAAgtaaggctctttctccacacttaatgatagggttcaagttggaaggactt Alignment from Pairagon GTAGGAAGAAGTGGTA-TACTTCAGGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG tcacctggcagcctgtaaatgggcatggtgagggtcttgttttgtttcagGTAGGTAGAAGTGGTATTCCTTCAAGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACAGTTCAATCAAgtaaggctctttctccacacttaatgatagggttcaagttggaaggactt Alignment from Exonerate_protein2genome GTAGGAAGAAGTGGTATA-CTTCAGGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG tcacctggcagcctgtaaatgggcatggtgagggtcttgttttgtttcagGTAGGTAGAAGTGGTATTCCTTCAAGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACAGTTCAATCAAgtaaggctctttctccacacttaatgatagggttcaagttggaaggactt Alignment from Exonerate_coding2genome GTAGGAAGAAGTGGTATA-CTTCAGGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG tcacctggcagcctgtaaatgggcatggtgagggtcttgttttgtttcagGTAGGTAGAAGTGGTATTCCTTCAAGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACAGTTCAATCAAgtaaggctctttctccacacttaatgatagggttcaagttggaaggactt Alignment from GeneWise -----ATACTTCAGGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAG tcacctggcagcctgtaaatgggcatggtgagggtcttgttttgtttcaggtaggtagaagTGGTATTCCTTCAAGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACAGTTCAATCAAgtaaggctctttctccacacttaatgatagggttcaagttggaaggactt #### Ltbp3_ID1253_5 --> 2 - 1 Original Alignment atACAGGGGTGCAGAAGCCT-GGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGg cccagtgcccacccccttttgtcactgtagtacttttgtttctgtttcagatACAGGAGTGCAGAAGCCTCGGACCTGTACGAGGGGAGGTGGGCGCTGACTGCCCCAAGGGCTATAAGAGACTTAACAGCACCCATTCTCAGggtgggtattaccagagattctgttaaccgttagatggatgtgtggtcagg Alignment from CESAR atACAGGGGTGCAGAAGCCT-GGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGg cccagtgcccacccccttttgtcactgtagtacttttgtttctgtttcagatACAGGAGTGCAGAAGCCTCGGACCTGTACGAGGGGAGGTGGGCGCTGACTGCCCCAAGGGCTATAAGAGACTTAACAGCACCCATTCTCAGggtgggtattaccagagattctgttaaccgttagatggatgtgtggtcagg Alignment from Spaln_aa2Genome ATACAGGGGTGCAGAAGCCT-GGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGG cccagtgcccacccccttttgtcactgtagtacttttgtttctgtttcagATACAGGAGTGCAGAAGCCTcGGACCTGTACGAGGGGAGGTGGGCGCTGACTGCCCCAAGGGCTATAAGAGACTTAACAGCACCCATTCTCAGGgtgggtattaccagagattctgttaaccgttagatggatgtgtggtcagg Alignment from Spaln_nt2Genome ATACAGGGGTGCAGAAGCCT-GGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGG cccagtgcccacccccttttgtcactgtagtacttttgtttctgtttcagATACAGGAGTGCAGAAGCCTCGGACCTGTACGAGGGGAGGTGGGCGCTGACTGCCCCAAGGGCTATAAGAGACTTAACAGCACCCATTCTCAGGgtgggtattaccagagattctgttaaccgttagatggatgtgtggtcagg Alignment from Pairagon ATACAGGGGTGCAGAAGCCT-GGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGG cccagtgcccacccccttttgtcactgtagtacttttgtttctgtttcagATACAGGAGTGCAGAAGCCTCGGACCTGTACGAGGGGAGGTGGGCGCTGACTGCCCCAAGGGCTATAAGAGACTTAACAGCACCCATTCTCAGGgtgggtattaccagagattctgttaaccgttagatggatgtgtggtcagg Alignment from Exonerate_protein2genome ATACAGGGGTGCAGAAGCCT-GGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGG cccagtgcccacccccttttgtcactgtagtacttttgtttctgtttcagATACAGGAGTGCAGAAGCCTCGGACCTGTACGAGGGGAGGTGGGCGCTGACTGCCCCAAGGGCTATAAGAGACTTAACAGCACCCATTCTCAGGgtgggtattaccagagattctgttaaccgttagatggatgtgtggtcagg Alignment from Exonerate_coding2genome ATACAGGGGTGCAGAAGCCT-GGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGG cccagtgcccacccccttttgtcactgtagtacttttgtttctgtttcagATACAGGAGTGCAGAAGCCTCGGACCTGTACGAGGGGAGGTGGGCGCTGACTGCCCCAAGGGCTATAAGAGACTTAACAGCACCCATTCTCAGGgtgggtattaccagagattctgttaaccgttagatggatgtgtggtcagg Alignment from GeneWise ATACAGGGGTGCAGAAGCCT-GGACCTGTACGTGGGGAGGTGGGTGCTGACTGCCCCCAGGGCTACAAGAGGCTCAACAGCACCCACTGCCAGG cccagtgcccacccccttttgtcactgtagtacttttgtttctgtttcagATACAGGAGTGCAGAAGCCTCGGACCTGTACGAGGGGAGGTGGGCGCTGACTGCCCCAAGGGCTATAAGAGACTTAACAGCACCCATTCTCAGGgtgggtattaccagagattctgttaaccgttagatggatgtgtggtcagg #### Ltbp3_ID1256_8 --> 2 - 1 Original Alignment caGCCTTCAAGGAGATCTGCCCGGCTGGGAAAGGGTACCATATCCTCACCTCCCACCAGACGCTCACCATCCAGGGGGAAAGCGACTTCTCCCTCTTCCTGCACCCCGACGGGCCACCCAAACCCCAGCAGCTTCCTGAAAGCCCCAGCCGAGCA-CCACCCCTCGAGGACACAGAGGAAGAGAGAg tgtgccgggccaggaccgccttgttgaatttctctctctgaaattgtcagctGCCTTCAAGGAGATCTGTCCAGCAGGGAAGGTCTATCATACGCTCACCTCTCACCAGATGCTGACCATCCATGGAGAAAGTGACTTCTCCCTATTCGTGCACCCTGATGGGCCACCCAAACCTCAGCAGCTTCCTGAAAGCCCAAGTCGGGCACCCACCCCTAGAGGACACAGAGGAAGAGAGAggtaagactacaggtgataatccactagcggacacaaggaagcaagagttc Alignment from CESAR caGCCTTCAAGGAGATCTGCCCGGCTGGGAAAGGGTACCATATCCTCACCTCCCACCAGACGCTCACCATCCAGGGGGAAAGCGACTTCTCCCTCTTCCTGCACCCCGACGGGCCACCCAAACCCCAGCAGCTTCCTGAAAGCCCCAGCCGAGCA-CCACCCCTCGAGGACACAGAGGAAGAGAGAg tgtgccgggccaggaccgccttgttgaatttctctctctgaaattgtcagctGCCTTCAAGGAGATCTGTCCAGCAGGGAAGGTCTATCATACGCTCACCTCTCACCAGATGCTGACCATCCATGGAGAAAGTGACTTCTCCCTATTCGTGCACCCTGATGGGCCACCCAAACCTCAGCAGCTTCCTGAAAGCCCAAGTCGGGCACCCACCCCTAGAGGACACAGAGGAAGAGAGAggtaagactacaggtgataatccactagcggacacaaggaagcaagagttc Alignment from Spaln_aa2Genome CAGCCTTCAAGGAGATCTGCCCGGCTGGGAAAGGGTACCATATCCTCACCTCCCACCAGACGCTCACCATCCAGGGGGAAAGCGACTTCTCCCTCTTCCTGCACCCCGACGGGCCACCCAAACCCCAGCAGCTTCCTGAAAGCCCCAGCCGAGCACCA-CCCCTCGAGGACACAGAGGAAGAGAGAG tgtgccgggccaggaccgccttgttgaatttctctctctgaaattgtcagCTGCCTTCAAGGAGATCTGTCCAGCAGGGAAGGTCTATCATACGCTCACCTCTCACCAGATGCTGACCATCCATGGAGAAAGTGACTTCTCCCTATTCGTGCACCCTGATGGGCCACCCAAACCTCAGCAGCTTCCTGAAAGCCCAAGTCGGGCACCCaCCCCTAGAGGACACAGAGGAAGAGAGAGgtaagactacaggtgataatccactagcggacacaaggaagcaagagttc Alignment from Spaln_nt2Genome CAGCCTTCAAGGAGATCTGCCCGGCTGGGAAAGGGTACCATATCCTCACCTCCCACCAGACGCTCACCATCCAGGGGGAAAGCGACTTCTCCCTCTTCCTGCACCCCGACGGGCCACCCAAACCCCAGCAGCTTCCTGAAAGCCCCAGCCGAGCAC-CACCCCTCGAGGACACAGAGGAAGAGAGAG tgtgccgggccaggaccgccttgttgaatttctctctctgaaattgtcagCTGCCTTCAAGGAGATCTGTCCAGCAGGGAAGGTCTATCATACGCTCACCTCTCACCAGATGCTGACCATCCATGGAGAAAGTGACTTCTCCCTATTCGTGCACCCTGATGGGCCACCCAAACCTCAGCAGCTTCCTGAAAGCCCAAGTCGGGCACCCACCCCTAGAGGACACAGAGGAAGAGAGAGgtaagactacaggtgataatccactagcggacacaaggaagcaagagttc Alignment from Pairagon CAGCCTTCAAGGAGATCTGCCCGGCTGGGAAAGGGTACCATATCCTCACCTCCCACCAGACGCTCACCATCCAGGGGGAAAGCGACTTCTCCCTCTTCCTGCACCCCGACGGGCCACCCAAACCCCAGCAGCTTCCTGAAAGCCCCAGCCGAGCA-CCACCCCTCGAGGACACAGAGGAAGAGAGAG tgtgccgggccaggaccgccttgttgaatttctctctctgaaattgtcagCTGCCTTCAAGGAGATCTGTCCAGCAGGGAAGGTCTATCATACGCTCACCTCTCACCAGATGCTGACCATCCATGGAGAAAGTGACTTCTCCCTATTCGTGCACCCTGATGGGCCACCCAAACCTCAGCAGCTTCCTGAAAGCCCAAGTCGGGCACCCACCCCTAGAGGACACAGAGGAAGAGAGAGgtaagactacaggtgataatccactagcggacacaaggaagcaagagttc Alignment from Exonerate_protein2genome CAGCCTTCAAGGAGATCTGCCCGGCTGGGAAAGGGTACCATATCCTCACCTCCCACCAGACGCTCACCATCCAGGGGGAAAGCGACTTCTCCCTCTTCCTGCACCCCGACGGGCCACCCAAACCCCAGCAGCTTCCTGAAAGCCCCAGCCGAGCA-CCACCCCTCGAGGACACAGAGGAAGAGAGAG tgtgccgggccaggaccgccttgttgaatttctctctctgaaattgtcagCTGCCTTCAAGGAGATCTGTCCAGCAGGGAAGGTCTATCATACGCTCACCTCTCACCAGATGCTGACCATCCATGGAGAAAGTGACTTCTCCCTATTCGTGCACCCTGATGGGCCACCCAAACCTCAGCAGCTTCCTGAAAGCCCAAGTCGGGCACCCACCCCTAGAGGACACAGAGGAAGAGAGAGgtaagactacaggtgataatccactagcggacacaaggaagcaagagttc Alignment from Exonerate_coding2genome CAGCCTTCAAGGAGATCTGCCCGGCTGGGAAAGGGTACCATATCCTCACCTCCCACCAGACGCTCACCATCCAGGGGGAAAGCGACTTCTCCCTCTTCCTGCACCCCGACGGGCCACCCAAACCCCAGCAGCTTCCTGAAAGCCCCAGCCGAGCA-CCACCCCTCGAGGACACAGAGGAAGAGAGAGGAGTGACCATGG tgtgccgggccaggaccgccttgttgaatttctctctctgaaattgtcagCTGCCTTCAAGGAGATCTGTCCAGCAGGGAAGGTCTATCATACGCTCACCTCTCACCAGATGCTGACCATCCATGGAGAAAGTGACTTCTCCCTATTCGTGCACCCTGATGGGCCACCCAAACCTCAGCAGCTTCCTGAAAGCCCAAGTCGGGCACCCACCCCTAGAGGACACAGAGGAAGAGAGAGGTAAGACTACAGgtgataatccactagcggacacaaggaagcaagagttc Alignment from GeneWise CAGCCTTCAAGGAGATCTGCCCGGCTGGGAAAGGGTACCATATCCTCACCTCCCACCAGACGCTCACCATCCAGGGGGAAAGCGACTTCTCCCTCTTCCTGCACCCCGACGGGCCACCCAAACCCCAGCAGCTTCCTGAAAGCCCCAGCCGA-GCACCACCCCTCGAGGACACAGAGGAAGAGAGAGGAGTGACCATGG tgtgccgggccaggaccgccttgttgaatttctctctctgaaattgtcagCTGCCTTCAAGGAGATCTGTCCAGCAGGGAAGGTCTATCATACGCTCACCTCTCACCAGATGCTGACCATCCATGGAGAAAGTGACTTCTCCCTATTCGTGCACCCTGATGGGCCACCCAAACCTCAGCAGCTTCCTGAAAGCCCAAGTCGGGCACCCACCCCTAGAGGACACAGAGGAAGAGAGAGGTAAGACTACAGgtgataatccactagcggacacaaggaagcaagagttc #### Ltbp3_ID1261_13 --> 2 - 1 Original Alignment atGTGAACGAGTGCGAGGCAGAGCCC-TGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGg gatatgactgatcaattccacccatatcagcagtgtcctctgctccccagatGTGAATGGGTGTGGGGCTGAGCCCCTGTGGCCCTGGAAAAGGTATCTGTATGACCACTGGTGGCTCGTATAATTGTCATTGCAACCGGGGCTACCGCCTTCATGTAGGTGCAGGGGGCCGCCTGTGCGTGggttgggatacttgggtagcacacacctgggtgtggaccatttctgatctt Alignment from CESAR atGTGAACGAGTGCGAGGCAGAG-CCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGg gatatgactgatcaattccacccatatcagcagtgtcctctgctccccagatGTGAATGGGTGTGGGGCTGAGCCCCTGTGGCCCTGGAAAAGGTATCTGTATGACCACTGGTGGCTCGTATAATTGTCATTGCAACCGGGGCTACCGCCTTCATGTAGGTGCAGGGGGCCGCCTGTGCGTGggttgggatacttgggtagcacacacctgggtgtggaccatttctgatctt Alignment from Spaln_aa2Genome ATGTGAACGAGTGCGAGGCAGAG-CCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG gatatgactgatcaattccacccatatcagcagtgtcctctgctccccagATGTGAATGGGTGTGGGGCTGAGcCCCTGTGGCCCTGGAAAAGGTATCTGTATGACCACTGGTGGCTCGTATAATTGTCATTGCAACCGGGGCTACCGCCTTCATGTAGGTGCAGGGGGCCGCCTGTGCGTGGgttgggatacttgggtagcacacacctgggtgtggaccatttctgatctt Alignment from Spaln_nt2Genome ATGTGAACGAGTGCGAGGCAGAGCCC-TGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG gatatgactgatcaattccacccatatcagcagtgtcctctgctccccagATGTGAATGGGTGTGGGGCTGAGCCCCTGTGGCCCTGGAAAAGGTATCTGTATGACCACTGGTGGCTCGTATAATTGTCATTGCAACCGGGGCTACCGCCTTCATGTAGGTGCAGGGGGCCGCCTGTGCGTGGgttgggatacttgggtagcacacacctgggtgtggaccatttctgatctt Alignment from Pairagon ATGTGAACGAGTGCGAGGCAGAG-CCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG gatatgactgatcaattccacccatatcagcagtgtcctctgctccccagATGTGAATGGGTGTGGGGCTGAGCCCCTGTGGCCCTGGAAAAGGTATCTGTATGACCACTGGTGGCTCGTATAATTGTCATTGCAACCGGGGCTACCGCCTTCATGTAGGTGCAGGGGGCCGCCTGTGCGTGGgttgggatacttgggtagcacacacctgggtgtggaccatttctgatctt Alignment from Exonerate_protein2genome ATGTGAACGAGTGCGAGGCAGAG-CCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG gatatgactgatcaattccacccatatcagcagtgtcctctgctccccagATGTGAATGGGTGTGGGGCTGAGCCCCTGTGGCCCTGGAAAAGGTATCTGTATGACCACTGGTGGCTCGTATAATTGTCATTGCAACCGGGGCTACCGCCTTCATGTAGGTGCAGGGGGCCGCCTGTGCGTGGgttgggatacttgggtagcacacacctgggtgtggaccatttctgatctt Alignment from Exonerate_coding2genome ATGTGAACGAGTGCGAGGCAGAG-CCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG gatatgactgatcaattccacccatatcagcagtgtcctctgctccccagATGTGAATGGGTGTGGGGCTGAGCCCCTGTGGCCCTGGAAAAGGTATCTGTATGACCACTGGTGGCTCGTATAATTGTCATTGCAACCGGGGCTACCGCCTTCATGTAGGTGCAGGGGGCCGCCTGTGCGTGGgttgggatacttgggtagcacacacctgggtgtggaccatttctgatctt Alignment from GeneWise GCCCTGCGGCCCCGGGAAAGGCATCTGTATGAACACTGGTGGCTCCTACAATTGTCACTGCAACCGAGGCTACCGCCTCCACGTGGGTGCAGGGGGCCGCTCGTGCGTGG gatatgactgatcaattccacccatatcagcagtgtcctctgctccccagatgtgaatgggtgtggggctgagCCCCTGTGGCCCTGGAAAAGGTATCTGTATGACCACTGGTGGCTCGTATAATTGTCATTGCAACCGGGGCTACCGCCTTCATGTAGGTGCAGGGGGCCGCCTGTGCGTGGgttgggatacttgggtagcacacacctgggtgtggaccatttctgatctt #### Ltbp3_ID1262_14 --> 2 - 1 Original Alignment acCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAAC-TGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAg atttctgatcttgacccctcccctccctccgtttctgtttctctctccagacCTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAACTTCCCGGGCCACTACACATGCAACCTGCTATCCTGGTTACAGGCTCAAGGCCTCCAGACCACCCATCTGGGAAggtataatgtcatcctatttctcctccctggccttaggttggataagcagg Alignment from CESAR acCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAAC-TGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAg atttctgatcttgacccctcccctccctccgtttctgtttctctctccagacCTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAACTTCCCGGGCCACTACACATGCAACCTGCTATCCTGGTTACAGGCTCAAGGCCTCCAGACCACCCATCTGGGAAggtataatgtcatcctatttctcctccctggccttaggttggataagcagg Alignment from Spaln_aa2Genome ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAAC-TGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG atttctgatcttgacccctcccctccctccgtttctgtttctctctccagACCTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAACTTCCCGGGCCACTACACATGCAACcTGCTATCCTGGTTACAGGCTCAAGGCCTCCAGACCACCCATCTGGGAAGgtataatgtcatcctatttctcctccctggccttaggttggataagcagg Alignment from Spaln_nt2Genome ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAA-CTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG atttctgatcttgacccctcccctccctccgtttctgtttctctctccagACCTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAACTTCCCGGGCCACTACACATGCAACCTGCTATCCTGGTTACAGGCTCAAGGCCTCCAGACCACCCATCTGGGAAGgtataatgtcatcctatttctcctccctggccttaggttggataagcagg Alignment from Pairagon ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAA-CTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG atttctgatcttgacccctcccctccctccgtttctgtttctctctccagACCTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAACTTCCCGGGCCACTACACATGCAACCTGCTATCCTGGTTACAGGCTCAAGGCCTCCAGACCACCCATCTGGGAAGgtataatgtcatcctatttctcctccctggccttaggttggataagcagg Alignment from Exonerate_protein2genome ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAAC-TGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG atttctgatcttgacccctcccctccctccgtttctgtttctctctccagACCTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAACTTCCCGGGCCACTACACATGCAACCTGCTATCCTGGTTACAGGCTCAAGGCCTCCAGACCACCCATCTGGGAAGgtataatgtcatcctatttctcctccctggccttaggttggataagcagg Alignment from Exonerate_coding2genome ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGCAAC-TGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG atttctgatcttgacccctcccctccctccgtttctgtttctctctccagACCTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAACTTCCCGGGCCACTACACATGCAACCTGCTATCCTGGTTACAGGCTCAAGGCCTCCAGACCACCCATCTGGGAAGgtataatgtcatcctatttctcctccctggccttaggttggataagcagg Alignment from GeneWise ACCTGAACGAGTGCACCAAGCCTCACCTGTGTGGGGACGGTGGCTTCTGCATCAACTTCCCTGGTCACTACAAATGC-AACTGCTATCCTGGCTACCGGCTCAAGGCCTCCCGACCGCCCATTTGCGAAG atttctgatcttgacccctcccctccctccgtttctgtttctctctccagACCTAAATGAGTGCACAAAGCCCCATCTGTGTGGTGATGGTGGCTTCTGCATCAACTTCCCGGGCCACTACACATGCAACCTGCTATCCTGGTTACAGGCTCAAGGCCTCCAGACCACCCATCTGGGAAGgtataatgtcatcctatttctcctccctggccttaggttggataagcagg #### Ltbp3_ID1263_15 --> 2 - 1 Original Alignment acATCGACGAGTGTCGC-GACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTg tggcaccagatttgtatcagaccaccctttccatacttggttctgcacagacATTGATGAATGTCATCGACCCCAGCACCTGCCCTGATGGCAAGTGTGAAAATAAACTTGGTAGCTTCAAGTGCATTGCTTGCCAGCCTGGCTACCGAAGCCAGGGGGGTGGGACATGTCATggtgaatcaaatctagtcccccccaaaggggtggcctgccctgggtagggc Alignment from CESAR acATCGACGAGTGTCGC-GACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTg tggcaccagatttgtatcagaccaccctttccatacttggttctgcacagacATTGATGAATGTCATCGACCCCAGCACCTGCCCTGATGGCAAGTGTGAAAATAAACTTGGTAGCTTCAAGTGCATTGCTTGCCAGCCTGGCTACCGAAGCCAGGGGGGTGGGACATGTCATggtgaatcaaatctagtcccccccaaaggggtggcctgccctgggtagggc Alignment from Spaln_aa2Genome ACATCGACGAGTGTCGC-GACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG tggcaccagatttgtatcagaccaccctttccatacttggttctgcacagACATTGATGAATGTCATcGACCCCAGCACCTGCCCTGATGGCAAGTGTGAAAATAAACTTGGTAGCTTCAAGTGCATTGCTTGCCAGCCTGGCTACCGAAGCCAGGGGGGTGGGACATGTCATGgtgaatcaaatctagtcccccccaaaggggtggcctgccctgggtagggc Alignment from Spaln_nt2Genome ACATCGACGAGTGTCG-CGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG tggcaccagatttgtatcagaccaccctttccatacttggttctgcacagACATTGATGAATGTCATCGACCCCAGCACCTGCCCTGATGGCAAGTGTGAAAATAAACTTGGTAGCTTCAAGTGCATTGCTTGCCAGCCTGGCTACCGAAGCCAGGGGGGTGGGACATGTCATGgtgaatcaaatctagtcccccccaaaggggtggcctgccctgggtagggc Alignment from Pairagon ACATCGACGAGTGTCG-CGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG tggcaccagatttgtatcagaccaccctttccatacttggttctgcacagACATTGATGAATGTCATCGACCCCAGCACCTGCCCTGATGGCAAGTGTGAAAATAAACTTGGTAGCTTCAAGTGCATTGCTTGCCAGCCTGGCTACCGAAGCCAGGGGGGTGGGACATGTCATGgtgaatcaaatctagtcccccccaaaggggtggcctgccctgggtagggc Alignment from Exonerate_protein2genome ACATCGACGAGTGTCGC-GACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG tggcaccagatttgtatcagaccaccctttccatacttggttctgcacagACATTGATGAATGTCATCGACCCCAGCACCTGCCCTGATGGCAAGTGTGAAAATAAACTTGGTAGCTTCAAGTGCATTGCTTGCCAGCCTGGCTACCGAAGCCAGGGGGGTGGGACATGTCATGgtgaatcaaatctagtcccccccaaaggggtggcctgccctgggtagggc Alignment from Exonerate_coding2genome ACATCGACGAGTGTCGC-GACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG tggcaccagatttgtatcagaccaccctttccatacttggttctgcacagACATTGATGAATGTCATCGACCCCAGCACCTGCCCTGATGGCAAGTGTGAAAATAAACTTGGTAGCTTCAAGTGCATTGCTTGCCAGCCTGGCTACCGAAGCCAGGGGGGTGGGACATGTCATGgtgaatcaaatctagtcccccccaaaggggtggcctgccctgggtagggc Alignment from GeneWise ACATCGACGAGTGT-CGCGACCCTAGCACCTGCCCTGATGGCAAATGTGAAAACAAACCTGGCAGCTTCAAGTGCATCGCCTGCCAGCCTGGCTACCGTAGCCAGGGGGGCGGGGCCTGTCGTG tggcaccagatttgtatcagaccaccctttccatacttggttctgcacagACATTGATGAATGTCATCGACCCCAGCACCTGCCCTGATGGCAAGTGTGAAAATAAACTTGGTAGCTTCAAGTGCATTGCTTGCCAGCCTGGCTACCGAAGCCAGGGGGGTGGGACATGTCATGgtgaatcaaatctagtcccccccaaaggggtggcctgccctgggtagggc #### Ltbp3_ID1270_22 --> 2 - 1 Original Alignment acATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACG-CAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGg acatctgagtaataggccactgggatctcaccccgtttcctttcccccagatATTGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTTTGTGAACACGCCAGCCTGGCTATGAGTGCTACTGCAAGCAGGGCTTCTATTACGATGGTAATCTTCTAGAGTGTGTAggtaagttagactattgtgcaacccaaagaacagctgaatcagtggttggc Alignment from CESAR acATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACG-CAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGg acatctgagtaataggccactgggatctcaccccgtttcctttcccccagatATTGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTTTGTGAACACGCCAGCCTGGCTATGAGTGCTACTGCAAGCAGGGCTTCTATTACGATGGTAATCTTCTAGAGTGTGTAggtaagttagactattgtgcaacccaaagaacagctgaatgaaaacttgtg Alignment from Spaln_aa2Genome ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACG-CAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG acatctgagtaataggccactgggatctcaccccgtttcctttcccccagATATTGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTTTGTGAACACGcCAGCCTGGCTATGAGTGCTACTGCAAGCAGGGCTTCTATTACGATGGTAATCTTCTAGAGTGTGTAGgtaagttagactattgtgcaacccaaagaacagctgaatcagtggttggc Alignment from Spaln_nt2Genome ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACG-CAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG acatctgagtaataggccactgggatctcaccccgtttcctttcccccagATATTGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTTTGTGAACACGCCAGCCTGGCTATGAGTGCTACTGCAAGCAGGGCTTCTATTACGATGGTAATCTTCTAGAGTGTGTAGgtaagttagactattgtgcaacccaaagaacagctgaatcagtggttggc Alignment from Pairagon ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACG-CAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG acatctgagtaataggccactgggatctcaccccgtttcctttcccccagATATTGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTTTGTGAACACGCCAGCCTGGCTATGAGTGCTACTGCAAGCAGGGCTTCTATTACGATGGTAATCTTCTAGAGTGTGTAGgtaagttagactattgtgcaacccaaagaacagctgaatcagtggttggc Alignment from Exonerate_protein2genome ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACG-CAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG acatctgagtaataggccactgggatctcaccccgtttcctttcccccagATATTGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTTTGTGAACACGCCAGCCTGGCTATGAGTGCTACTGCAAGCAGGGCTTCTATTACGATGGTAATCTTCTAGAGTGTGTAGgtaagttagactattgtgcaacccaaagaacagctgaatcagtggttggc Alignment from Exonerate_coding2genome ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAACACG-CAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG acatctgagtaataggccactgggatctcaccccgtttcctttcccccagATATTGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTTTGTGAACACGCCAGCCTGGCTATGAGTGCTACTGCAAGCAGGGCTTCTATTACGATGGTAATCTTCTAGAGTGTGTAGgtaagttagactattgtgcaacccaaagaacagctgaatcagtggttggc Alignment from GeneWise ACATCGACGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGCAAGTGTGTGAAC-ACGCAGCCCGGCTACGAGTGCTACTGCAAGCAGGGCTTCTACTACGATGGCAACCTGCTGGAGTGCGTGG acatctgagtaataggccactgggatctcaccccgtttcctttcccccagATATTGATGAATGCATATTGTTTGGGGCAGAGATCTGCAAGGAGGGTAAGTTTGTGAACACGCCAGCCTGGCTATGAGTGCTACTGCAAGCAGGGCTTCTATTACGATGGTAATCTTCTAGAGTGTGTAGgtaagttagactattgtgcaacccaaagaacagctgaatcagtggttggc #### Ltbp3_ID1274_26 --> 2 - 1 Original Alignment acGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGC-TGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGg accattgtatgcaaatcctactataggtctgactgagtctgtccccgcagatGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACCTGTGCACCACGTCCAGGTGGGGCTGTATGCGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCTCGTCGTGTAggtaaggatgacattagggggtgaaggacagtgtggactcattacggactt Alignment from CESAR acGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGC-TGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGg accattgtatgcaaatcctactataggtctgactgagtctgtccccgcagatGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACCTGTGCACCACGTCCAGGTGGGGCTGTATGCGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCTCGTCGTGTAggtaaggatgacattagggggtgaaggacagtgtggactcattacggactt Alignment from Spaln_aa2Genome ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGC-TGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG accattgtatgcaaatcctactataggtctgactgagtctgtccccgcagATGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACcTGTGCACCACGTCCAGGTGGGGCTGTATGCGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCTCGTCGTGTAGgtaaggatgacattagggggtgaaggacagtgtggactcattacggactt Alignment from Spaln_nt2Genome ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGC-TGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG accattgtatgcaaatcctactataggtctgactgagtctgtccccgcagATGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACCTGTGCACCACGTCCAGGTGGGGCTGTATGCGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCTCGTCGTGTAGgtaaggatgacattagggggtgaaggacagtgtggactcattacggactt Alignment from Pairagon ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACG-CTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG accattgtatgcaaatcctactataggtctgactgagtctgtccccgcagATGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACCTGTGCACCACGTCCAGGTGGGGCTGTATGCGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCTCGTCGTGTAGgtaaggatgacattagggggtgaaggacagtgtggactcattacggactt Alignment from Exonerate_protein2genome ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGC-TGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG accattgtatgcaaatcctactataggtctgactgagtctgtccccgcagATGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACCTGTGCACCACGTCCAGGTGGGGCTGTATGCGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCTCGTCGTGTAGgtaaggatgacattagggggtgaaggacagtgtggactcattacggactt Alignment from Exonerate_coding2genome ACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTGAGCGGACGC-TGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG accattgtatgcaaatcctactataggtctgactgagtctgtccccgcagATGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACCTGTGCACCACGTCCAGGTGGGGCTGTATGCGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCTCGTCGTGTAGgtaaggatgacattagggggtgaaggacagtgtggactcattacggactt Alignment from GeneWise --------------TCTCCGCGAGACGAAGACAGCTCAGAGGAGGATTCAGATGAGTGCCGTTGTGTG-AGCGGACGCTGTGTGCCACGGCCAGGCGGGGCGGTATGCGAGTGTCCTGGAGGCTTTCAGCTGGACGCCTCCCGTGCCCGCTGCGTGG accattgtatgcaaatcctactatagGTCTGACTGAGTCTGTCCCCGCAGATGAAGACAGCTCAGAGGAAGATTCAGATGAGTGCCGTTGTGTCATTGGGCACCTGTGCACCACGTCCAGGTGGGGCTGTATGCGAGTGTCCTGGTGGTTTTCAATTGGATGCCTCCCGTGCTCGTCGTGTAGgtaaggatgacattagggggtgaaggacagtgtggactcattacggactt #### Macrod1_ID2054_9 --> 0 - 1 Original Alignment GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAG-GGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAg tacaccagttacgttccaagcttaagttggttctgtgtttctctctctagGTGGATCGGCTCATCATCTGTGTCTTCTTGGAGAAAGATGAGCGGCATTTACAGGGAACATCTTCCCCATTATTTCCCAGTAggtgagtaccaattgctcatatgctcgtagacatccgtaattcactgggac Alignment from CESAR GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAG-GGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAg tacaccagttacgttccaagcttaagttggttctgtgtttctctctctagGTGGATCGGCTCATCATCTGTGTCTTCTTGGAGAAAGATGAGCGGCATTTACAGGGAACATCTTCCCCATTATTTCCCAGTAggtgagtaccaattgctcatatgctcgtagacatcctatttcttgcttttc Alignment from Spaln_aa2Genome GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAG-GGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAG tacaccagttacgttccaagcttaagttggttctgtgtttctctctctagGTGGATCGGCTCATCATCTGTGTCTTCTTGGAGAAAGATGAGcGGCATTTACAGGGAACATCTTCCCCATTATTTCCCAGTAGgtgagtaccaattgctcatatgctcgtagacatccgtaattcactgggac Alignment from Spaln_nt2Genome GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAG-GGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAGCC tacaccagttacgttccaagcttaagttggttctgtgtttctctctctagGTGGATCGGCTCATCATCTGTGTCTTCTTGGAGAAAGATGAGCGGCATTTACAGGGAACATCTTCCCCATTATTTCCCAGTAGGTgagtaccaattgctcatatgctcgtagacatccgtaattcactgggac Alignment from Pairagon GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAG-GGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAG tacaccagttacgttccaagcttaagttggttctgtgtttctctctctagGTGGATCGGCTCATCATCTGTGTCTTCTTGGAGAAAGATGAGCGGCATTTACAGGGAACATCTTCCCCATTATTTCCCAGTAGgtgagtaccaattgctcatatgctcgtagacatccgtaattcactgggac Alignment from Exonerate_protein2genome GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGACGAG-GGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTA tacaccagttacgttccaagcttaagttggttctgtgtttctctctctagGTGGATCGGCTCATCATCTGTGTCTTCTTGGAGAAAGATGAGCGGCATTTACAGGGAACATCTTCCCCATTATTTCCCAGTAggtgagtaccaattgctcatatgctcgtagacatccgtaattcactgggac Alignment from Exonerate_coding2genome tacaccagttacgttccaagcttaagttggttctgtgtttctctctctaggtggatcggctcatcatctgtgtcttcttggagaaagatgagcggcatttacagggaacatcttccccattatttcccagtaggtgagtaccaattgctcatatgctcgtagacatccgtaattcactgggac Alignment from GeneWise GTGGATCGGCTCATCATCTGTGTGTTCCTGGAGAAGGAC-GAGGGCATTTACCGGGAGCGCCTTCCCCATTATTTCCCAGTAGCC tacaccagttacgttccaagcttaagttggttctgtgtttctctctctagGTGGATCGGCTCATCATCTGTGTCTTCTTGGAGAAAGATGAGCGGCATTTACAGGGAACATCTTCCCCATTATTTCCCAGTAGGTgagtaccaattgctcatatgctcgtagacatccgtaattcactgggac #### Map3k11_ID1202_3 --> 1 - 1 Original Alignment cTTTGGAGTGCTG-CTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTg cctcccgagttgtattcacatccacacaatcttcctgatttttatcttagtTTTGGAGTGTTACCTGTGGGAGCTGCTGACTGGGAAAGTGCCATACCGAGGCATTGACTGTCTTGCTGTAGTTTATGGTGTGGCTGTAAATAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTggtaggagagataaggttgtgtggagctgaaaagcaggcccctggtgagaa Alignment from CESAR cTTTGGAGTGCTG-CTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTg cctcccgagttgtattcacatccacacaatcttcctgatttttatcttagtTTTGGAGTGTTACCTGTGGGAGCTGCTGACTGGGAAAGTGCCATACCGAGGCATTGACTGTCTTGCTGTAGTTTATGGTGTGGCTGTAAATAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTggtaggagagataaggttgtgtggagctgaaaagcaggcccctggtgagaa Alignment from Spaln_aa2Genome CTTTGGAGTGCTG-CTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG cctcccgagttgtattcacatccacacaatcttcctgatttttatcttagTTTTGGAGTGTTAcCTGTGGGAGCTGCTGACTGGGAAAGTGCCATACCGAGGCATTGACTGTCTTGCTGTAGTTTATGGTGTGGCTGTAAATAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtaggagagataaggttgtgtggagctgaaaagcaggcccctggtgagaa Alignment from Spaln_nt2Genome CTTTGGAGTGCTGC-TGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG cctcccgagttgtattcacatccacacaatcttcctgatttttatcttagTTTTGGAGTGTTACCTGTGGGAGCTGCTGACTGGGAAAGTGCCATACCGAGGCATTGACTGTCTTGCTGTAGTTTATGGTGTGGCTGTAAATAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtaggagagataaggttgtgtggagctgaaaagcaggcccctggtgagaa Alignment from Pairagon CTTTGGAGTGCTG-CTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG cctcccgagttgtattcacatccacacaatcttcctgatttttatcttagTTTTGGAGTGTTACCTGTGGGAGCTGCTGACTGGGAAAGTGCCATACCGAGGCATTGACTGTCTTGCTGTAGTTTATGGTGTGGCTGTAAATAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtaggagagataaggttgtgtggagctgaaaagcaggcccctggtgagaa Alignment from Exonerate_protein2genome CTTTGGAGTGCTG-CTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG cctcccgagttgtattcacatccacacaatcttcctgatttttatcttagTTTTGGAGTGTTACCTGTGGGAGCTGCTGACTGGGAAAGTGCCATACCGAGGCATTGACTGTCTTGCTGTAGTTTATGGTGTGGCTGTAAATAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtaggagagataaggttgtgtggagctgaaaagcaggcccctggtgagaa Alignment from Exonerate_coding2genome CTTTGGAGTGCTG-CTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG cctcccgagttgtattcacatccacacaatcttcctgatttttatcttagTTTTGGAGTGTTACCTGTGGGAGCTGCTGACTGGGAAAGTGCCATACCGAGGCATTGACTGTCTTGCTGTAGTTTATGGTGTGGCTGTAAATAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtaggagagataaggttgtgtggagctgaaaagcaggcccctggtgagaa Alignment from GeneWise CTTTGGAGTGCTG-CTGTGGGAACTGCTGACTGGGGAGGTGCCCTACCGTGGCATCGACTGTCTTGCCGTAGCCTATGGTGTGGCTGTAAACAAGTTAACGTTACCCATCCCATCTACCTGCCCTGAGCCCTTTGCACAACTCATGGCTG cctcccgagttgtattcacatccacacaatcttcctgatttttatcttagTTTTGGAGTGTTACCTGTGGGAGCTGCTGACTGGGAAAGTGCCATACCGAGGCATTGACTGTCTTGCTGTAGTTTATGGTGTGGCTGTAAATAAATTAACATTACCCATTCCATCTACTTGTCCCGAGCCCTTCGCACAACTCATGGCTGgtaggagagataaggttgtgtggagctgaaaagcaggcccctggtgagaa #### Map3k11_ID1203_4 --> 2 - 0 Original Alignment acTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTG-TTTGATGAGCTGCGGGCCAAGGAAAAG agcaggcccctggtgagaatgtctagaggtcctctttcctcctcccgcagatTGCTGGGCACAGGATCCACACCGCAGGCCCCATTTTGCTTCCATATTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTGCTTCCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGTTTGCTTTGATGAGCTGCGGGCCAAGGAAAAGgtgagtttcctatgggacatagaaagtaatacgcaatggggtgggggtct Alignment from CESAR acTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTG-TTTGATGAGCTGCGGGCCAAGGAAAAG agcaggcccctggtgagaatgtctagaggtcctctttcctcctcccgcagatTGCTGGGCACAGGATCCACACCGCAGGCCCCATTTTGCTTCCATATTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTGCTTCCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGTTTGCTTTGATGAGCTGCGGGCCAAGGAAAAGgtgagtttcctatgggacatagaaagtaatacgcaatggggtgggggtct Alignment from Spaln_aa2Genome ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTG-TTTGATGAGCTGCGGGCCAAGGAAAAG agcaggcccctggtgagaatgtctagaggtcctctttcctcctcccgcagATTGCTGGGCACAGGATCCACACCGCAGGCCCCATTTTGCTTCCATATTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTGCTTCCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGTTTGcTTTGATGAGCTGCGGGCCAAGGAAAAGgtgagtttcctatgggacatagaaagtaatacgcaatggggtgggggtct Alignment from Spaln_nt2Genome ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTG-TTTGATGAGCTGCGGGCCAAGGAAAAG agcaggcccctggtgagaatgtctagaggtcctctttcctcctcccgcagATTGCTGGGCACAGGATCCACACCGCAGGCCCCATTTTGCTTCCATATTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTGCTTCCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGTTTGCTTTGATGAGCTGCGGGCCAAGGAAAAGgtgagtttcctatgggacatagaaagtaatacgcaatggggtgggggtct Alignment from Pairagon ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTG-TTTGATGAGCTGCGGGCCAAGGAAAAG agcaggcccctggtgagaatgtctagaggtcctctttcctcctcccgcagATTGCTGGGCACAGGATCCACACCGCAGGCCCCATTTTGCTTCCATATTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTGCTTCCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGTTTGCTTTGATGAGCTGCGGGCCAAGGAAAAGgtgagtttcctatgggacatagaaagtaatacgcaatggggtgggggtct Alignment from Exonerate_protein2genome ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTG-TTTGATGAGCTGCGGGCCAAGGAAAAG agcaggcccctggtgagaatgtctagaggtcctctttcctcctcccgcagATTGCTGGGCACAGGATCCACACCGCAGGCCCCATTTTGCTTCCATATTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTGCTTCCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGTTTGCTTTGATGAGCTGCGGGCCAAGGAAAAGgtgagtttcctatgggacatagaaagtaatacgcaatggggtgggggtct Alignment from Exonerate_coding2genome ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGCCTG-TTTGATGAGCTGCGGGCCAAGGAAAAG agcaggcccctggtgagaatgtctagaggtcctctttcctcctcccgcagATTGCTGGGCACAGGATCCACACCGCAGGCCCCATTTTGCTTCCATATTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTGCTTCCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGTTTGCTTTGATGAGCTGCGGGCCAAGGAAAAGgtgagtttcctatgggacatagaaagtaatacgcaatggggtgggggtct Alignment from GeneWise ACTGCTGGGCACAGGACCCCCACCGCAGGCCCGACTTCGCCTCCATCCTGCAGCAGTTGGAAGCTCTAGAAGCGCAGGTGCTGCGGGAGATGCCACGGGACTCCTTCCATTCCATGCAGGAAGGCTGGAAACGCGAGATCCAGGGC-CTGTTTGATGAGCTGCGGGCCAAGGAAAAG agcaggcccctggtgagaatgtctagaggtcctctttcctcctcccgcagATTGCTGGGCACAGGATCCACACCGCAGGCCCCATTTTGCTTCCATATTGCAGCAGTTGGAAGCTCTAGAAGCACAGGTGCTGCGGGAGATGCCACGAGACTGCTTCCATTCCATGCAGGAAGGCTGGAAATGTGAGATAGAGGGTTTGCTTTGATGAGCTGCGGGCCAAGGAAAAGgtgagtttcctatgggacatagaaagtaatacgcaatggggtgggggtct #### Map3k11_ID1204_5 --> 0 - 1 Original Alignment GAACTACTGAGC-CGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGA------CGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGg tctacgttagtgaactgatagccagcttaactacactgtttgctttacagGAACTCCTTAGTCCGAGAGGAAGAATTGACATGGGCTGCATGTGTGCAGTGGTCTCAGGCAGAGCAGCTGCGGCTGCGACGGCGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACAACTGCCTGCACTGACATTGCTACTCCAGCAGGTGGATCGAGAACAGCCACATGTACACCGACGCCGGGGCACCTCCAAGTTGAGTAAACTCCGAGCAAGAGACAGTGAAGAACGGGTCAGCATGCCCTTGggtacccgctggggcttcaattgtgtccgcaatttgctagtggtggtgctg Alignment from CESAR GAACTACTGAGC-CGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTG------CGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGg tctacgttagtgaactgatagccagcttaactacactgtttgctttacagGAACTCCTTAGTCCGAGAGGAAGAATTGACATGGGCTGCATGTGTGCAGTGGTCTCAGGCAGAGCAGCTGCGGCTGCGACGGCGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACAACTGCCTGCACTGACATTGCTACTCCAGCAGGTGGATCGAGAACAGCCACATGTACACCGACGCCGGGGCACCTCCAAGTTGAGTAAACTCCGAGCAAGAGACAGTGAAGAACGGGTCAGCATGCCCTTGggtacccgctggggcttcaattgtgtccgcaatttgctagtggtggtgctg Alignment from Spaln_aa2Genome -GAACTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAG------CTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG tctacgttagtgaactgatagccagcttaactacactgtttgctttacagGAACTCCTTAGTCCGAGAGGAAGAATTGACATGGGCTGCATGTGTGCAGTGGTCTCAGGCAGAGCAGCTGCGGCTGCGACGGCGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACAACTGCCTGCACTGACATTGCTACTCCAGCAGGTGGATCGAGAACAGCCACATGTACACCGACGCCGGGGCACCTCCAAGTTGAGTAAACTCCGAGCAAGAGACAGTGAAGAACGGGTCAGCATGCCCTTGGgtacccgctggggcttcaattgtgtccgcaatttgctagtggtggtgctg Alignment from Spaln_nt2Genome GAACTACTGAG-CCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCG------ACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGA------GCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG tctacgttagtgaactgatagccagcttaactacactgtttgctttacagGAACTCCTTAGTCCGAGAGGAAGAATTGACATGGGCTGCATGTGTGCAGTGGTCTCAGGCAGAGCAGCTGCGGCTGCGACGGCGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACAACTGCCTGCACTGACATTGCTACTCCAGCAGGTGGATCGAGAACAGCCACATGTACACCGACGCCGGGGCACCTCCAAGTTGAGTAAACTCCGAGCAAGAGACAGTGAAGAACGGGTCAGCATGCCCTTGGgtacccgctggggcttcaattgtgtccgcaatttgctagtggtggtgctg Alignment from Pairagon GAACTACTGAG-CCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCA------GCTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGA------GCGCGAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG tctacgttagtgaactgatagccagcttaactacactgtttgctttacagGAACTCCTTAGTCCGAGAGGAAGAATTGACATGGGCTGCATGTGTGCAGTGGTCTCAGGCAGAGCAGCTGCGGCTGCGACGGCGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACAACTGCCTGCACTGACATTGCTACTCCAGCAGGTGGATCGAGAACAGCCACATGTACACCGACGCCGGGGCACCTCCAAGTTGAGTAAACTCCGAGCAAGAGACAGTGAAGAACGGGTCAGCATGCCCTTGGgtacccgctggggcttcaattgtgtccgcaatttgctagtggtggtgctg Alignment from Exonerate_protein2genome GAACTACTGAGC-CGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAG------CTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG tctacgttagtgaactgatagccagcttaactacactgtttgctttacagGAACTCCTTAGTCCGAGAGGAAGAATTGACATGGGCTGCATGTGTGCAGTGGTCTCAGGCAGAGCAGCTGCGGCTGCGACGGCGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACAACTGCCTGCACTGACATTGCTACTCCAGCAGGTGGATCGAGAACAGCCACATGTACACCGACGCCGGGGCACCTCCAAGTTGAGTAAACTCCGAGCAAGAGACAGTGAAGAACGGGTCAGCATGCCCTTGGgtacccgctggggcttcaattgtgtccgcaatttgctagtggtggtgctg Alignment from Exonerate_coding2genome GAACTACTGAGC-CGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAG------CTGCGACGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG tctacgttagtgaactgatagccagcttaactacactgtttgctttacagGAACTCCTTAGTCCGAGAGGAAGAATTGACATGGGCTGCATGTGTGCAGTGGTCTCAGGCAGAGCAGCTGCGGCTGCGACGGCGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACAACTGCCTGCACTGACATTGCTACTCCAGCAGGTGGATCGAGAACAGCCACATGTACACCGACGCCGGGGCACCTCCAAGTTGAGTAAACTCCGAGCAAGAGACAGTGAAGAACGGGTCAGCATGCCCTTGGgtacccgctggggcttcaattgtgtccgcaatttgctagtggtggtgctg Alignment from GeneWise ----CTACTGAGCCGGGAGGAGGAACTGACGCGCGCTGCACGTGAGCAGCGGTCCCAGGCGGAGCAGCTGCGA------CGGCGCGAGCACCTGCTGGCGCAGTGGGAGCTGGAGGTGTTCGAGCGC------GAGCTGACGCTGCTACTGCAGCAGGTGGACCGAGAACGGCCGCACGTGCGCCGCCGCCGGGGCACCTTCAAGCGGAGCAAACTCCGAGCAAGGGACGGCGGAGAACGCATCAGCATGCCCCTGG tctacgttagtgaactgatagccagcttaactacactgtttgctttacagGAACTCCTTAGTCCGAGAGGAAGAATTGACATGGGCTGCATGTGTGCAGTGGTCTCAGGCAGAGCAGCTGCGGCTGCGACGGCGTGAGCACTTGCTGGCACAATGGGAGCTGGAGGTATTTGAACAACTGCCTGCACTGACATTGCTACTCCAGCAGGTGGATCGAGAACAGCCACATGTACACCGACGCCGGGGCACCTCCAAGTTGAGTAAACTCCGAGCAAGAGACAGTGAAGAACGGGTCAGCATGCCCTTGGgtacccgctggggcttcaattgtgtccgcaatttgctagtggtggtgctg #### Map4k2_ID1628_7 --> 0 - 1 Original Alignment GGTGCCAACCTTCTGCTCACTCTGCAGGGT-GATGTCAAGCTGg aaagcctagaagtgtacccagcatataactttgccttgccttcaatccagGGCGCGAACCTTCTGCTCACTCTGCAGGGACGATGTGCAGTTGtgtgagtagctgggggacttcagagaccacacgacggcatgctggggctcc Alignment from CESAR GGTGCCAACCTTCTGCTCACTCTGCAGGGT-GATGTCAAGCTGg aaagcctagaagtgtacccagcatataactttgccttgccttcaatccagGGCGCGAACCTTCTGCTCACTCTGCAGGGACGATGTGCAGTTGtgtgagtagctgggggacttcagagaccacacgacggcatgctggggctcc Alignment from Spaln_aa2Genome GGTGCCAACCTTCTGCTCACTCTGCAGGGTGAT- aaagcctagaagtgtacccagcatataactttgccttgccttcaatccagGGCGCGAACCTTCTGCTCACTCTGCAGGGACGATgtgcagttgtgtgagtagctgggggacttcagagaccacacgacggcatgctggggctcc Alignment from Spaln_nt2Genome GGTGCCAACCTTCTGCTCACTCTGCAGGGT-GATGTCAAGCTGG aaagcctagaagtgtacccagcatataactttgccttgccttcaatccagGGCGCGAACCTTCTGCTCACTCTGCAGGGACGATGTGCAGTTGTgtgagtagctgggggacttcagagaccacacgacggcatgctggggctcc Alignment from Pairagon GGTGCCAACCTTCTGCTCACTCTGCAGGG-TGATGTCAAGCTGG aaagcctagaagtgtacccagcatataactttgccttgccttcaatccagGGCGCGAACCTTCTGCTCACTCTGCAGGGACGATGTGCAGTTGTgtgagtagctgggggacttcagagaccacacgacggcatgctggggctcc Alignment from Exonerate_protein2genome GGTGCCAACCTTCTGCTCACTCTGCAGGGT-GATGTCAAGCTGG aaagcctagaagtgtacccagcatataactttgccttgccttcaatccagGGCGCGAACCTTCTGCTCACTCTGCAGGGACGATGTGCAGTTGTgtgagtagctgggggacttcagagaccacacgacggcatgctggggctcc Alignment from Exonerate_coding2genome GGTGCCAACCTTCTGCTCACTCTGCAGGGT-GATGTCAAGCTGG aaagcctagaagtgtacccagcatataactttgccttgccttcaatccagGGCGCGAACCTTCTGCTCACTCTGCAGGGACGATGTGCAGTTGTgtgagtagctgggggacttcagagaccacacgacggcatgctggggctcc Alignment from GeneWise aaagcctagaagtgtacccagcatataactttgccttgccttcaatccagggcgcgaaccttctgctcactctgcagggacgatgtgcagttgtgtgagtagctgggggacttcagagaccacacgacggcatgctggggctcc #### Map4k2_ID1629_8 --> 2 - 2 Original Alignment cgGACTTTGGGGTGTCAGGCGAGCTGACAGCATCT-GTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACtg tggtgtaggaaacatatgtgcccccaggaccctgcctccctcctccccagccGATTTTGGGGTCACAGATGAAGCTACAACATCTCGTTGCTAAGAGGCACTCTCTCATAGGCACTCCATACtggtgagttgttccagagcaatgggtgaagggcatattgagaggaccaccag Alignment from CESAR cgGACTTTGGGGTGTCAGGCGAGCTGACAGCATCT-GTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACtg tggtgtaggaaacatatgtgcccccaggaccctgcctccctcctccccagccGATTTTGGGGTCACAGATGAAGCTACAACATCTCGTTGCTAAGAGGCACTCTCTCATAGGCACTCCATACtggtgagttgttccagagcaatgggtgaagggcatattgagaggaccaccag Alignment from Spaln_aa2Genome CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCT-GTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG tggtgtaggaaacatatgtgcccccaggaccctgcctccctcctccccagCCGATTTTGGGGTCACAGATGAAGCTACAACATCTcGTTGCTAAGAGGCACTCTCTCATAGGCACTCCATACTGgtgagttgttccagagcaatgggtgaagggcatattgagaggaccaccag Alignment from Spaln_nt2Genome CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCT-GTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG tggtgtaggaaacatatgtgcccccaggaccctgcctccctcctccccagCCGATTTTGGGGTCACAGATGAAGCTACAACATCTCGTTGCTAAGAGGCACTCTCTCATAGGCACTCCATACTGgtgagttgttccagagcaatgggtgaagggcatattgagaggaccaccag Alignment from Pairagon CGGACTTTGGGGTGTCAGGCGAGCTGACAGCATCT-GTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG tggtgtaggaaacatatgtgcccccaggaccctgcctccctcctccccagCCGATTTTGGGGTCACAGATGAAGCTACAACATCTCGTTGCTAAGAGGCACTCTCTCATAGGCACTCCATACTGgtgagttgttccagagcaatgggtgaagggcatattgagaggaccaccag Alignment from Exonerate_protein2genome tggtgtaggaaacatatgtgcccccaggaccctgcctccctcctccccagccgattttggggtcacagatgaagctacaacatctcgttgctaagaggcactctctcataggcactccatactggtgagttgttccagagcaatgggtgaagggcatattgagaggaccaccag Alignment from Exonerate_coding2genome tggtgtaggaaacatatgtgcccccaggaccctgcctccctcctccccagccgattttggggtcacagatgaagctacaacatctcgttgctaagaggcactctctcataggcactccatactggtgagttgttccagagcaatgggtgaagggcatattgagaggaccaccag Alignment from GeneWise CGGACTTTGGGGTGTCAGGCGAGCTGACAGCA-TCTGTGGCCAAAAGACGTTCTTTCATTGGCACTCCATACTG tggtgtaggaaacatatgtgcccccaggaccctgcctccctcctccccagCCGATTTTGGGGTCACAGATGAAGCTACAACATCTCGTTGCTAAGAGGCACTCTCTCATAGGCACTCCATACTGgtgagttgttccagagcaatgggtgaagggcatattgagaggaccaccag #### Map4k2_ID1631_10 --> 1 - 2 Original Alignment gGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCA-CCCAAGCTAAGAGATAAGACGCGTtg tgtgcttgtccccctgatgacccttgacctctggtgtgtctgcccggcaggGCGCTGATGCTCATGTCAAAGAGTAGTTTCCAGCCACCCTAAGCTAAGAGATAAGACACGTtggtacttctccaccacaacagggaaatttccagcatactgtatgagataga Alignment from CESAR gGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCC-AAGCTAAGAGATAAGACGCGTtg tgtgcttgtccccctgatgacccttgacctctggtgtgtctgcccggcaggGCGCTGATGCTCATGTCAAAGAGTAGTTTCCAGCCACCCTAAGCTAAGAGATAAGACACGTtggtacttctccaccacaacagggaaatttccagcatactgtatgagataga Alignment from Spaln_aa2Genome GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCC-AAGCTAAGAGATAAGACGCGTTG tgtgcttgtccccctgatgacccttgacctctggtgtgtctgcccggcagGGCGCTGATGCTCATGTCAAAGAGTAGTTTCCAGCCACCCtAAGCTAAGAGATAAGACACGTTGgtacttctccaccacaacagggaaatttccagcatactgtatgagataga Alignment from Spaln_nt2Genome GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCA-CCCAAGCTAAGAGATAAGACGCGTTG tgtgcttgtccccctgatgacccttgacctctggtgtgtctgcccggcagGGCGCTGATGCTCATGTCAAAGAGTAGTTTCCAGCCACCCTAAGCTAAGAGATAAGACACGTTGgtacttctccaccacaacagggaaatttccagcatactgtatgagataga Alignment from Pairagon GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCC-AAGCTAAGAGATAAGACGCGTTG tgtgcttgtccccctgatgacccttgacctctggtgtgtctgcccggcagGGCGCTGATGCTCATGTCAAAGAGTAGTTTCCAGCCACCCTAAGCTAAGAGATAAGACACGTTGgtacttctccaccacaacagggaaatttccagcatactgtatgagataga Alignment from Exonerate_protein2genome tgtgcttgtccccctgatgacccttgacctctggtgtgtctgcccggcagggcgctgatgctcatgtcaaagagtagtttccagccaccctaagctaagagataagacacgttggtacttctccaccacaacagggaaatttccagcatactgtatgagataga Alignment from Exonerate_coding2genome GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCA-CCCAAGCTAAGAGATAAGACGCGTTG tgtgcttgtccccctgatgacccttgacctctggtgtgtctgcccggcagGGCGCTGATGCTCATGTCAAAGAGTAGTTTCCAGCCACCCTAAGCTAAGAGATAAGACACGTTGgtacttctccaccacaacagggaaatttccagcatactgtatgagataga Alignment from GeneWise GGCCTTGATGCTCATGTCGAAAAGCAGCTTCCAGCCACCC-AAGCTAAGAGATAAGACGCGTTG tgtgcttgtccccctgatgacccttgacctctggtgtgtctgcccggcagGGCGCTGATGCTCATGTCAAAGAGTAGTTTCCAGCCACCCTAAGCTAAGAGATAAGACACGTTGgtacttctccaccacaacagggaaatttccagcatactgtatgagataga #### Map4k2_ID1632_11 --> 1 - 0 Original Alignment gACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAG-AACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cagtgcctagtctgaatttggatgggtgtaatgagatgttctttctgtaggACTCAGAATTTTCACCACTTCCGCAAGCTAGCCCTGACCAAACAATCCAAAGAAGAGGCCGACAGCAGAGAGGCTTCTACAAgtgagcaggggagaatagctggaaacttgagattttgaaaaagtgatctg Alignment from CESAR gACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAG-AACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cagtgcctagtctgaatttggatgggtgtaatgagatgttctttctgtaggACTCAGAATTTTCACCACTTCCGCAAGCTAGCCCTGACCAAACAATCCAAAGAAGAGGCCGACAGCAGAGAGGCTTCTACAAgtgagcaggggagaatagctggaaacttgagattttgaaaaagtgatctg Alignment from Spaln_aa2Genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAG-AACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cagtgcctagtctgaatttggatgggtgtaatgagatgttctttctgtagGACTCAGAATTTTCACCACTTCCGCAAGCTAGCCCTGACCAAAcAATCCAAAGAAGAGGCCGACAGCAGAGAGGCTTCTACAAgtgagcaggggagaatagctggaaacttgagattttgaaaaagtgatctg Alignment from Spaln_nt2Genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAG-AACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cagtgcctagtctgaatttggatgggtgtaatgagatgttctttctgtagGACTCAGAATTTTCACCACTTCCGCAAGCTAGCCCTGACCAAACAATCCAAAGAAGAGGCCGACAGCAGAGAGGCTTCTACAAgtgagcaggggagaatagctggaaacttgagattttgaaaaagtgatctg Alignment from Pairagon GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAG-AACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cagtgcctagtctgaatttggatgggtgtaatgagatgttctttctgtagGACTCAGAATTTTCACCACTTCCGCAAGCTAGCCCTGACCAAACAATCCAAAGAAGAGGCCGACAGCAGAGAGGCTTCTACAAgtgagcaggggagaatagctggaaacttgagattttgaaaaagtgatctg Alignment from Exonerate_protein2genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAG-AACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cagtgcctagtctgaatttggatgggtgtaatgagatgttctttctgtagGACTCAGAATTTTCACCACTTCCGCAAGCTAGCCCTGACCAAACAATCCAAAGAAGAGGCCGACAGCAGAGAGGCTTCTACAAgtgagcaggggagaatagctggaaacttgagattttgaaaaagtgatctg Alignment from Exonerate_coding2genome GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACCAAG-AACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cagtgcctagtctgaatttggatgggtgtaatgagatgttctttctgtagGACTCAGAATTTTCACCACTTCCGCAAGCTAGCCCTGACCAAACAATCCAAAGAAGAGGCCGACAGCAGAGAGGCTTCTACAAgtgagcaggggagaatagctggaaacttgagattttgaaaaagtgatctg Alignment from GeneWise GACCCAGAATTTCCACCACTTCCTCAAGCTGGCCCTAACC-AAGAACCCCAAGAAGAGGCCTACAGCAGAGAGGCTTCTGCAG cagtgcctagtctgaatttggatgggtgtaatgagatgttctttctgtagGACTCAGAATTTTCACCACTTCCGCAAGCTAGCCCTGACCAAACAATCCAAAGAAGAGGCCGACAGCAGAGAGGCTTCTACAAgtgagcaggggagaatagctggaaacttgagattttgaaaaagtgatctg #### Map4k2_ID1634_13 --> 0 - 1 Original Alignment ACCCATGACATGTTTCCAGATACCATCCATTCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCCC-TCCGAGATCCAGt ttaatctactggtgcgtagcgggttaacttctgtgtttgttttctactagACCCATGATATGTTTCCAGATACCATCCATTCCCACAGCCATCATGGTCCTGCCGAGAGGACTCCTCTCAGAGATCCAAtgtaaggtatcagggtggtgagaaaatcctaatctgattaggtatctgcag Alignment from CESAR ACCCATGACATGTTTCCAGATACCATCCATTCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCCC-TCCGAGATCCAGt ttaatctactggtgcgtagcgggttaacttctgtgtttgttttctactagACCCATGATATGTTTCCAGATACCATCCATTCCCACAGCCATCATGGTCCTGCCGAGAGGACTCCTCTCAGAGATCCAAtgtaaggtatcagggtggtgagaaaatcctaatctgattaggtatctgcag Alignment from Spaln_aa2Genome ACCCATGACATGTTTCCAGATACCATCCATTCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCCC-TCCGAGATCCAGT ttaatctactggtgcgtagcgggttaacttctgtgtttgttttctactagACCCATGATATGTTTCCAGATACCATCCATTCCCACAGCCATCATGGTCCTGCCGAGAGGACTCCTcTCAGAGATCCAATgtaaggtatcagggtggtgagaaaatcctaatctgattaggtatctgcag Alignment from Spaln_nt2Genome ACCCATGACATGTTTCCAGATACCATCCATTCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCC-CTCCGAGATCCAGT ttaatctactggtgcgtagcgggttaacttctgtgtttgttttctactagACCCATGATATGTTTCCAGATACCATCCATTCCCACAGCCATCATGGTCCTGCCGAGAGGACTCCTCTCAGAGATCCAATgtaaggtatcagggtggtgagaaaatcctaatctgattaggtatctgcag Alignment from Pairagon ACCCATGACATGTTTCCAGATACCATCCATTCCCGCAGCCATCATGGTCCTGCTGAGAGGAC-CCCCTCCGAGATCCAGT ttaatctactggtgcgtagcgggttaacttctgtgtttgttttctactagACCCATGATATGTTTCCAGATACCATCCATTCCCACAGCCATCATGGTCCTGCCGAGAGGACTCCTCTCAGAGATCCAATgtaaggtatcagggtggtgagaaaatcctaatctgattaggtatctgcag Alignment from Exonerate_protein2genome ttaatctactggtgcgtagcgggttaacttctgtgtttgttttctactagacccatgatatgtttccagataccatccattcccacagccatcatggtcctgccgagaggactcctctcagagatccaatgtaaggtatcagggtggtgagaaaatcctaatctgattaggtatctgcag Alignment from Exonerate_coding2genome ttaatctactggtgcgtagcgggttaacttctgtgtttgttttctactagacccatgatatgtttccagataccatccattcccacagccatcatggtcctgccgagaggactcctctcagagatccaatgtaaggtatcagggtggtgagaaaatcctaatctgattaggtatctgcag Alignment from GeneWise ACCCATGACATGTTTCCAGATACCATCCATTCCCGCAGCCATCATGGTCCTGCTGAGAGGACCCCC-TCCGAGATCCAGT ttaatctactggtgcgtagcgggttaacttctgtgtttgttttctactagACCCATGATATGTTTCCAGATACCATCCATTCCCACAGCCATCATGGTCCTGCCGAGAGGACTCCTCTCAGAGATCCAATgtaaggtatcagggtggtgagaaaatcctaatctgattaggtatctgcag #### Map4k2_ID1636_15 --> 0 - 2 Original Alignment TGGGAGGAGGAGTGGACGCTC-CTGGGAAAAGAGGAACTGAGTgg cttcccattttgtgtctacttctcttcaacttactgtctctttcttctagTGGGAAGAGGAGTGGACGCTCCCTGGGAAAAGAGGAACTGAGTgggcaagtgagagtggttgggaaagtaggggtgcaagcagaccctgttgatg Alignment from CESAR TGGGAGGAGGAGTGGACGCTC-CTGGGAAAAGAGGAACTGAGTgg cttcccattttgtgtctacttctcttcaacttactgtctctttcttctagTGGGAAGAGGAGTGGACGCTCCCTGGGAAAAGAGGAACTGAGTgggcaagtgagagtggttgggaaagtaggggtgcaagcagaccctgttgatg Alignment from Spaln_aa2Genome TGGGAGGAGGAGTGGACGCTC-CTGGGAAAAGAGGAACTGAGTGG cttcccattttgtgtctacttctcttcaacttactgtctctttcttctagTGGGAAGAGGAGTGGACGCTCcCTGGGAAAAGAGGAACTGAGTGGgcaagtgagagtggttgggaaagtaggggtgcaagcagaccctgttgatg Alignment from Spaln_nt2Genome TGGGAGGAGGAGTGGACGCT-CCTGGGAAAAGAGGAACTGAGTGG cttcccattttgtgtctacttctcttcaacttactgtctctttcttctagTGGGAAGAGGAGTGGACGCTCCCTGGGAAAAGAGGAACTGAGTGGgcaagtgagagtggttgggaaagtaggggtgcaagcagaccctgttgatg Alignment from Pairagon TGGGAGGAGGAGTGGACGCT-CCTGGGAAAAGAGGAACTGAGTGG cttcccattttgtgtctacttctcttcaacttactgtctctttcttctagTGGGAAGAGGAGTGGACGCTCCCTGGGAAAAGAGGAACTGAGTGGgcaagtgagagtggttgggaaagtaggggtgcaagcagaccctgttgatg Alignment from Exonerate_protein2genome TGGGAGGAGGAGTGGACGCTC-CTGGGAAAAGAGGAACTGAGTGG cttcccattttgtgtctacttctcttcaacttactgtctctttcttctagTGGGAAGAGGAGTGGACGCTCCCTGGGAAAAGAGGAACTGAGTGGgcaagtgagagtggttgggaaagtaggggtgcaagcagaccctgttgatg Alignment from Exonerate_coding2genome TGGGAGGAGGAGTGGACGCTC-CTGGGAAAAGAGGAACTGAGTGGGAGCCTGCTGCAGTCAGTCCAGGAGGCCCTGGAGG cttcccattttgtgtctacttctcttcaacttactgtctctttcttctagTGGGAAGAGGAGTGGACGCTCCCTGGGAAAAGAGGAACTGAGTGGGCAAGTGAGAGTGGTTGGGAAAGTAGGGGTGCAAGcagaccctgttgatg Alignment from GeneWise TGGGAGGAGGAGTGGACGCTCCTGGGAAAAGAGGAACTGAGTGGGAGCCTGCTGCAGT cttcccattttgtgtctacttctcttcaacttactgtctctttcttctagTGGGAAGAGGAGTGGACGCTCCCTGGGAAAAGAGGAACTGAGTGGGCAAGTGAGAGTGgttgggaaagtaggggtgcaagcagaccctgttgatg #### Map4k2_ID1639_18 --> 0 - 1 Original Alignment GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTG-GGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAg ctacagaacaactttttatgagaccgggcttgccctgtgttgtcacccagGAGCTTGATTCCCCAGATGATGCCATTGGAACTATTAAGCGGGCTCCATTCTTGCGGCCTCCCCCACACTGAGTCAACATCTGGTGATAATGCCCAGTCCTGC---CCAggtaaggtcagggactggtaagccacgtggtatgttggggacatgccaggg Alignment from CESAR GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTG-GGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAg ctacagaacaactttttatgagaccgggcttgccctgtgttgtcacccagGAGCTTGATTCCCCAGATGATGCCATTGGAACTATTAAGCGGGCTCCATTCTTGCGGCCTCCCCCACACTGAGTCAACATCTGGTGATAATGCCCAGTCCTGC---CCAggtaaggtcagggactggtaagccacgtggtatgttggggacatgccaggg Alignment from Spaln_aa2Genome GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTG-GGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG ctacagaacaactttttatgagaccgggcttgccctgtgttgtcacccagGAGCTTGATTCCCCAGATGATGCCATTGGAACTATTAAGCGGGCTCCATTCTTGcGGCCTCCCCCACACTGAGTCAACATCTGGTGATAATGCCCAGTCCTGC---CCAGgtaaggtcagggactggtaagccacgtggtatgttggggacatgccaggg Alignment from Spaln_nt2Genome GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTGGGGC-TGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG ctacagaacaactttttatgagaccgggcttgccctgtgttgtcacccagGAGCTTGATTCCCCAGATGATGCCATTGGAACTATTAAGCGGGCTCCATTCTTGCGGCCTCCCCCACACTGAGTCAACATCTGGTGATAATGCCCAGTCCTG---CCCAGgtaaggtcagggactggtaagccacgtggtatgttggggacatgccaggg Alignment from Pairagon GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTG-GGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG ctacagaacaactttttatgagaccgggcttgccctgtgttgtcacccagGAGCTTGATTCCCCAGATGATGCCATTGGAACTATTAAGCGGGCTCCATTCTTGCGGCCTCCCCCACACTGAGTCAACATCTGGTGATAATGCCCAGTCCTG---CCCAGgtaaggtcagggactggtaagccacgtggtatgttggggacatgccaggg Alignment from Exonerate_protein2genome GAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTG-GGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG ctacagaacaactttttatgagaccgggcttgccctgtgttgtcacccagGAGCTTGATTCCCCAGATGATGCCATTGGAACTATTAAGCGGGCTCCATTCTTGCGGCCTCCCCCACACTGAGTCAACATCTGGTGATAATGCCCAGTCCTGC---CCAGgtaaggtcagggactggtaagccacgtggtatgttggggacatgccaggg Alignment from Exonerate_coding2genome AGGCCCTGGAGGAAAGGAGCCTGACTATCCGGCCAGCCTTAGAACTCCAGGAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTTTTG-GGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG CTACAGAACAACTTTTTATGAGACCGGGCTTGCCCTGTGTTGTCACCCAGGAGCTTGATTCCCCAGATGATGCCATTGGAACTATTAAGCGGGCTCCATTCTTGCGGCCTCCCCCACACTGAGTCAACATCTGGTGATAATGCCCAGTCCTGC---CCAGgtaaggtcagggactggtaagccacgtggtatgttggggacatgccaggg Alignment from GeneWise AGGCCCTGGAGGAAAGGAGCCTGACTATCCGGCCAGCCTTAGAACTCCAGGAGCTGGACTCCCCGGATGATGCCATCGGAACCATCAAACGGGCTCCATTT-TTGGGGCTGCCCCACACTGAGTCAACATCTGGTGACAATGCCCAGTCCTGCTCCCCAG AACAACTTTTTATGAGACCGGGCTTG------CCCTGTGTTGTCACCCAGGAGCTTGATTCCCCAGATGATGCCATTGGAACTATTAAGCGGGCTCCATTCTTGCGGCCTCCCCCACACTGAGTCAACATCTGGTGATAATGCCCAGTCCTGC---CCAGgtaaggtcagggactggtaagccacgtggtatgttggggacatgccaggg #### Map4k2_ID1640_19 --> 2 - 0 Original Alignment gtACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAG-GAGGATCGTGAG gttggggacatgccaggggctggcaccactatttgtgttttccactccaggcACCTTGTCAGCCCCCCCAGCT---CCTGATAGCCATGCCCTGCTACCAACTGCTTGGGCTACCCTAAAGCAGCAACGAGGATCGTGAGgtaagacagataactgaatggtaagggtgggaaacctatttgccaccttt Alignment from CESAR gtACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAG-GAGGATCGTGAG gttggggacatgccaggggctggcaccactatttgtgttttccactccaggcACCTTGTCAGCCCCCCCAGCT---CCTGATAGCCATGCCCTGCTACCAACTGCTTGGGCTACCCTAAAGCAGCAACGAGGATCGTGAGgtaagacagataactgaatggtaagggtgggaaacctactcttccctcct Alignment from Spaln_aa2Genome GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAG-GAGGATCGTGAG gttggggacatgccaggggctggcaccactatttgtgttttccactccagGCACCTTGTCAGCCCCCCCAGCT---CCTGATAGCCATGCCCTGCTACCAACTGCTTGGGCTACCCTAAAGCAGCAAcGAGGATCGTGAGgtaagacagataactgaatggtaagggtgggaaacctatttgccaccttt Alignment from Spaln_nt2Genome GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAG-GAGGATCGTGAG gttggggacatgccaggggctggcaccactatttgtgttttccactccagGCACCTTGTCAGCCCCCCCAGCT---CCTGATAGCCATGCCCTGCTACCAACTGCTTGGGCTACCCTAAAGCAGCAACGAGGATCGTGAGgtaagacagataactgaatggtaagggtgggaaacctatttgccaccttt Alignment from Pairagon GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAG-GAGGATCGTGAG gttggggacatgccaggggctggcaccactatttgtgttttccactccagGCACCTTGTCAGCCCCCCCAGCT---CCTGATAGCCATGCCCTGCTACCAACTGCTTGGGCTACCCTAAAGCAGCAACGAGGATCGTGAGgtaagacagataactgaatggtaagggtgggaaacctatttgccaccttt Alignment from Exonerate_protein2genome GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAG-GAGGATCGTGAG gttggggacatgccaggggctggcaccactatttgtgttttccactccagGCACCTTGTCAGCCCCCCCAGCT---CCTGATAGCCATGCCCTGCTACCAACTGCTTGGGCTACCCTAAAGCAGCAACGAGGATCGTGAGgtaagacagataactgaatggtaagggtgggaaacctatttgccaccttt Alignment from Exonerate_coding2genome GGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAGGAGGATCGTGAGCGATCATCCTGCCATGGGCTTCCTCCCACCCCCAAGGTGCACATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTG GTTGGGGACATGCCAGGGGCTGGCACCACTATTTGTGTTTTCCACTCCAGGCACCTTGTCAGCCCCCCCAGCTCCTGATAGCCATGCCCTGCTACCAACTGCTTGGGCTACCCTAAAGCAGCAACGAGGATCGTGAGgtaagacagataactgaatggtaagggtgggaaacctatttgccaccttt Alignment from GeneWise GTACCCTGTCAGCACCTCCAGCTGGCCCTGGCAGCCCCGCATTGCTGCCTACCGCCTGGGCTACTCTGAAGCAACAG-GAGGATCGTGAG gttggggacatgccaggggctggcaccactatttgtgttttccactccagGCACCTTGTCAGCCCCCCCAGCT---CCTGATAGCCATGCCCTGCTACCAACTGCTTGGGCTACCCTAAAGCAGCAACGAGGATCGTGAGgtaagacagataactgaatggtaagggtgggaaacctatttgccaccttt #### Map4k2_ID1641_20 --> 0 - 0 Original Alignment CGATCATCCTGCCAT-GGGCTTCCTCCCACCCCCAAGGTGCAC taactgaatggtaagggtgggaaacctactcttccctcctctttcgacagCGGTCATCCTGCTATCGGTCTTCCTCCCACCCCAAAGGTCCCTgtatacggtgacagatgtccctgggccaccatagccaactggctgtgttc Alignment from CESAR CGATCATCCTGCCAT-GGGCTTCCTCCCACCCCCAAGGTGCAC taactgaatggtaagggtgggaaacctactcttccctcctctttcgacagCGGTCATCCTGCTATCGGTCTTCCTCCCACCCCAAAGGTCCCTgtatacggtgacagatgtccctgggccaccatagccaactggtgtggctc Alignment from Spaln_aa2Genome CGATCATCCTGCCAT-GGGCTTCCTCCCACCCCCAAGGTGCAC taactgaatggtaagggtgggaaacctactcttccctcctctttcgacagCGGTCATCCTGCTATcGGTCTTCCTCCCACCCCAAAGGTCCCTgtatacggtgacagatgtccctgggccaccatagccaactggctgtgttc Alignment from Spaln_nt2Genome CGATCATCCTGCCATGGG-CTTCCTCCCACCCCCAAGGTGCAC taactgaatggtaagggtgggaaacctactcttccctcctctttcgacagCGGTCATCCTGCTATCGGTCTTCCTCCCACCCCAAAGGTCCCTgtatacggtgacagatgtccctgggccaccatagccaactggctgtgttc Alignment from Pairagon CGATCATCCTGCCATGGG-CTTCCTCCCACCCCCAAGGTG----------------------------------------------------- taactgaatggtaagggtgggaaacctactcttccctcctctttcgacagCGGTCATCCTGCTATCGGTCTTCCTCCCACCCCAAAGGTCCCTGTATACGGTGACAGATGTCCCTGGGCCACCATAGCCAACTGGCTGTGTTC Alignment from Exonerate_protein2genome CGATCATCCTGCCAT-GGGCTTCCTCCCACCCCCAAGGTGCAC taactgaatggtaagggtgggaaacctactcttccctcctctttcgacagCGGTCATCCTGCTATCGGTCTTCCTCCCACCCCAAAGGTCCCTgtatacggtgacagatgtccctgggccaccatagccaactggctgtgttc Alignment from Exonerate_coding2genome TGCCATGGGCTTCCTC taactgaatggtaagggtgggaaacctactcttccctcctctttcgacagcggtcatcctgctatcggtcttcctcccaccccaaaggtccctgtatacggtgacagatgtccctgggccaccatagCCAACTGGCTGTGTTC Alignment from GeneWise CGATCATCCTGCCATG taactgaatggtaagggtgggaaacctactcttccctcctctttcgacagcggtcatcctgctatcggtcttcctcccaccccaaaggtccctgtatacggtgacagatgtccctgggccaccatagCCAACTGGCTGTGTTC #### Map4k2_ID1642_21 --> 0 - 1 Original Alignment ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCC-CTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAg atgtccctgggccaccatagccaactggtgtggctcctctctgggcacagATGGGTGCTTGCTTCACCAAGGTCTCTAATGGCTGTCCCCCTGCAGATTCATGCTGCTGTTACTTGGGTTCACCCTGTGACACGAggtaagtgtaggtagactagaagggataacttaggaacccatgaccttgag Alignment from CESAR ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCC-CTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAg atgtccctgggccaccatagccaactggtgtggctcctctctgggcacagATGGGTGCTTGCTTCACCAAGGTCTCTAATGGCTGTCCCCCTGCAGATTCATGCTGCTGTTACTTGGGTTCACCCTGTGACACGAggtaagtgtaggtagactagaagggataacttaggaacccatgaccttgag Alignment from Spaln_aa2Genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGC-CCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG atgtccctgggccaccatagccaactggtgtggctcctctctgggcacagATGGGTGCTTGCTTCACCAAGGTCTCTAATGGCTGTcCCCCTGCAGATTCATGCTGCTGTTACTTGGGTTCACCCTGTGACACGAGgtaagtgtaggtagactagaagggataacttaggaacccatgaccttgag Alignment from Spaln_nt2Genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTG-CCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG atgtccctgggccaccatagccaactggtgtggctcctctctgggcacagATGGGTGCTTGCTTCACCAAGGTCTCTAATGGCTGTCCCCCTGCAGATTCATGCTGCTGTTACTTGGGTTCACCCTGTGACACGAGgtaagtgtaggtagactagaagggataacttaggaacccatgaccttgag Alignment from Pairagon ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTG-CCCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG atgtccctgggccaccatagccaactggtgtggctcctctctgggcacagATGGGTGCTTGCTTCACCAAGGTCTCTAATGGCTGTCCCCCTGCAGATTCATGCTGCTGTTACTTGGGTTCACCCTGTGACACGAGgtaagtgtaggtagactagaagggataacttaggaacccatgaccttgag Alignment from Exonerate_protein2genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGC-CCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG atgtccctgggccaccatagccaactggtgtggctcctctctgggcacagATGGGTGCTTGCTTCACCAAGGTCTCTAATGGCTGTCCCCCTGCAGATTCATGCTGCTGTTACTTGGGTTCACCCTGTGACACGAGgtaagtgtaggtagactagaagggataacttaggaacccatgaccttgag Alignment from Exonerate_coding2genome ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGC-CCCCTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG atgtccctgggccaccatagccaactggtgtggctcctctctgggcacagATGGGTGCTTGCTTCACCAAGGTCTCTAATGGCTGTCCCCCTGCAGATTCATGCTGCTGTTACTTGGGTTCACCCTGTGACACGAGgtaagtgtaggtagactagaagggataacttaggaacccatgaccttgag Alignment from GeneWise ATGGGTGCCTGCTTCTCCAAGGTCTTCAATGGCTGCCCC-CTGCAGATCCATGCTGCTGTCACTTGGGTTCACCCTGTGACTCGAG atgtccctgggccaccatagccaactggtgtggctcctctctgggcacagATGGGTGCTTGCTTCACCAAGGTCTCTAATGGCTGTCCCCCTGCAGATTCATGCTGCTGTTACTTGGGTTCACCCTGTGACACGAGgtaagtgtaggtagactagaagggataacttaggaacccatgaccttgag #### Map4k2_ID1652_31 --> 0 - 2 Original Alignment GTGACGCAGGAGATAACAGATGAGACCAGGATCTTCCGAGTA-CTGGGGGCTCACag gcttcctgagggcctacactgagaaggatgtatgttttctgctctcctagGTGACACAGGAGATAACAGATGATGCTAGGATCTTCCGAGTACCTTGGAGCCCATaggtaagtgcaaaacagacctccttgatttgtaaagttgtagggctctgtac Alignment from CESAR GTGACGCAGGAGATAACAGATGAGACCAGGATCTTCCGAGTA-CTGGGGGCTCACag gcttcctgagggcctacactgagaaggatgtatgttttctgctctcctagGTGACACAGGAGATAACAGATGATGCTAGGATCTTCCGAGTACCTTGGAGCCCATaggtaagtgcaaaacagacctccttgatttgtaaagttgtagggtatatgat Alignment from Spaln_aa2Genome GTGACGCAGGAGATAACAGATGAGACCAGGATCTTCCGAGTA-CTGGGGGCTCACAG gcttcctgagggcctacactgagaaggatgtatgttttctgctctcctagGTGACACAGGAGATAACAGATGATGCTAGGATCTTCCGAGTAcCTTGGAGCCCATAGgtaagtgcaaaacagacctccttgatttgtaaagttgtagggctctgtac Alignment from Spaln_nt2Genome GTGACGCAGGAGATAACAGATGAGACCAGGATCTTCCGAGTAC-TGGGGGCTCACAG gcttcctgagggcctacactgagaaggatgtatgttttctgctctcctagGTGACACAGGAGATAACAGATGATGCTAGGATCTTCCGAGTACCTTGGAGCCCATAGgtaagtgcaaaacagacctccttgatttgtaaagttgtagggctctgtac Alignment from Pairagon GTGACGCAGGAGATAACAGATGAGACCAGGATCTTCCGAGTA-CTGGGGGCTCACAG gcttcctgagggcctacactgagaaggatgtatgttttctgctctcctagGTGACACAGGAGATAACAGATGATGCTAGGATCTTCCGAGTACCTTGGAGCCCATAGgtaagtgcaaaacagacctccttgatttgtaaagttgtagggctctgtac Alignment from Exonerate_protein2genome GTGACGCAGGAGATAACAGATGAGACCAGGATCTTCCGAGTA-CTGGGGGCTCACAG gcttcctgagggcctacactgagaaggatgtatgttttctgctctcctagGTGACACAGGAGATAACAGATGATGCTAGGATCTTCCGAGTACCTTGGAGCCCATAGgtaagtgcaaaacagacctccttgatttgtaaagttgtagggctctgtac Alignment from Exonerate_coding2genome GTGACGCAGGAGATAACAGATGAGACCAGGATCTTCCGAGTA-CTGGGGGCTCACAG gcttcctgagggcctacactgagaaggatgtatgttttctgctctcctagGTGACACAGGAGATAACAGATGATGCTAGGATCTTCCGAGTACCTTGGAGCCCATAGgtaagtgcaaaacagacctccttgatttgtaaagttgtagggctctgtac Alignment from GeneWise GTGACGCAGGAGATAACAGATGAGACCAGGATCTTCCGA-GTACTGGGGGCTCACAG gcttcctgagggcctacactgagaaggatgtatgttttctgctctcctagGTGACACAGGAGATAACAGATGATGCTAGGATCTTCCGAGTACCTTGGAGCCCATAGgtaagtgcaaaacagacctccttgatttgtaaagttgtagggctctgtac #### Mark2_ID2114_7 --> 0 - 0 Original Alignment ATAGTGTCTGCTGTGCAGTAC-TGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG ctgttatgcccccgtgtatcactctcactttatgtttttcaaaactgtagATAGTGTCTGCTGTGCAATACCTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAGgtaaattatgttcctgtccccatgacctgctgtgagtgggccaggtggcc Alignment from CESAR ATAGTGTCTGCTGTGCAGTAC-TGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG ctgttatgcccccgtgtatcactctcactttatgtttttcaaaactgtagATAGTGTCTGCTGTGCAATACCTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAGgtaaattatgttcctgtccccatgacctgctgtgagtgggccaggtggcc Alignment from Spaln_aa2Genome ATAGTGTCTGCTGTGCAGTAC-TGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG ctgttatgcccccgtgtatcactctcactttatgtttttcaaaactgtagATAGTGTCTGCTGTGCAATACcTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAGgtaaattatgttcctgtccccatgacctgctgtgagtgggccaggtggcc Alignment from Spaln_nt2Genome ATAGTGTCTGCTGTGCAGTAC-TGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG ctgttatgcccccgtgtatcactctcactttatgtttttcaaaactgtagATAGTGTCTGCTGTGCAATACCTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAGgtaaattatgttcctgtccccatgacctgctgtgagtgggccaggtggcc Alignment from Pairagon ATAGTGTCTGCTGTGCAGTA-CTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG ctgttatgcccccgtgtatcactctcactttatgtttttcaaaactgtagATAGTGTCTGCTGTGCAATACCTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAGgtaaattatgttcctgtccccatgacctgctgtgagtgggccaggtggcc Alignment from Exonerate_protein2genome ATAGTGTCTGCTGTGCAGTAC-TGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG ctgttatgcccccgtgtatcactctcactttatgtttttcaaaactgtagATAGTGTCTGCTGTGCAATACCTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAGgtaaattatgttcctgtccccatgacctgctgtgagtgggccaggtggcc Alignment from Exonerate_coding2genome ATAGTGTCTGCTGTGCAGTAC-TGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG ctgttatgcccccgtgtatcactctcactttatgtttttcaaaactgtagATAGTGTCTGCTGTGCAATACCTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAGgtaaattatgttcctgtccccatgacctgctgtgagtgggccaggtggcc Alignment from GeneWise ---TCTGCTGTGCAGTACTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAG ctgttatgcccccgtgtatcactctcactttatgtttttcaaaactgtagatagTGTCTGCTGTGCAATACCTGTCACCAGAAGTTCATTGTTCATAGAGATCTAAAGgtaaattatgttcctgtccccatgacctgctgtgagtgggccaggtggcc #### Mrpl11_ID768_3 --> 0 - 1 Original Alignment CCCGACAGGACA-TTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAg tctgactgggaataaattgagtaaattcctgtggttgtactgccttccagCCTGACAGGACTCTTTGAACTCAAC---------------GTCTCCTACTTGCTTAAGGCAGCTTCTGGCATTGAGAAGGGAGCCCGGCATACAggtaagtgttctggcagccatctgggtgcaaggaatcaaaaaaccaaatgg Alignment from CESAR CCCGACAGGACA-TTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAg tctgactgggaataaattgagtaaattcctgtggttgtactgccttccagCCTGACAGGACTCTTTGAACTC---------------AACGTCTCCTACTTGCTTAAGGCAGCTTCTGGCATTGAGAAGGGAGCCCGGCATACAggtaagtgttctggcagccatctgggtgcaaggaatcaaaaaaccaaatgg Alignment from Spaln_aa2Genome AGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG tctgactgggaataaattgagtaaattcctgtggttgtactgccttccagcctgacagGACTCTTTGAACTCAACGTCTCCTACTTGCTTAAGGCAGCTTCTGGCATTGAGAAGGGAGCCCGGCATACAGgtaagtgttctggcagccatctgggtgcaaggaatcaaaaaaccaaatgg Alignment from Spaln_nt2Genome CCCGACAGGACA-TTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG tctgactgggaataaattgagtaaattcctgtggttgtactgccttccagCCTGACAGGACTCTTTGAACTCAA---------------CGTCTCCTACTTGCTTAAGGCAGCTTCTGGCATTGAGAAGGGAGCCCGGCATACAGgtaagtgttctggcagccatctgggtgcaaggaatcaaaaaaccaaatgg Alignment from Pairagon CCCGACAGGAC-ATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG tctgactgggaataaattgagtaaattcctgtggttgtactgccttccagCCTGACAGGACTCTTTGAACTCAA---------------CGTCTCCTACTTGCTTAAGGCAGCTTCTGGCATTGAGAAGGGAGCCCGGCATACAGgtaagtgttctggcagccatctgggtgcaaggaatcaaaaaaccaaatgg Alignment from Exonerate_protein2genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG tctgactgggaataaattgagtaaattcctgtggttgtactgCCTTCCAGCCTGACAGGACTC------TTTGAACTCAACGTCTCCTACTTGCTTAAGGCAGCTTCTGGCATTGAGAAGGGAGCCCGGCATACAGgtaagtgttctggcagccatctgggtgcaaggaatcaaaaaaccaaatgg Alignment from Exonerate_coding2genome CCCGACAGGACATTTGAGCTCAAGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAG tctgactgggaataaattgagtaaattcctgtggttgtactgCCTTCCAGCCTGACAGGACTC------TTTGAACTCAACGTCTCCTACTTGCTTAAGGCAGCTTCTGGCATTGAGAAGGGAGCCCGGCATACAGgtaagtgttctggcagccatctgggtgcaaggaatcaaaaaaccaaatgg Alignment from GeneWise AGATTGGGCAGCCCACTGTTTCTTACTTTTTGAAGGCAGCTGCTGGGATCGAGAAGGGGGCCCGGCATACAGGGAAA--------------------------------------------- tctgactgggaataaattgagtaaattcctgtggttgtactgccttccagcctgacagGACTCTTTGAACTCAACGTCTCCTACTTGCTTAAGGCAGCTTCTGGCATTGAGAAGGGAGCCCGGCATACAGGTAAGTGTTCTGGCAGCCATCTGGGTGCAAGGAATCAAAAAACCAAATGG #### Mrpl43_ID9260_2 --> 1 - 1 Original Alignment gGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGA-CGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACc agcacaaaactgagagctagcctaataccttcctctcctttccttaccagaGAGTTGGTGGAACGTGAGGTTACTGACTTTTCCCAACTGGAACCCAGGAGTTGTGGTATATGTGAACTCTCGGCCTTGCACCATGCCACGAATGGTGGCAGAATACtgtacgtgtagctgagtgagggcaggggtgtgcagtgcatgttctactaca Alignment from CESAR gGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGG-AACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACc agcacaaaactgagagctagcctaataccttcctctcctttccttaccagaGAGTTGGTGGAACGTGAGGTTACTGACTTTTCCCAACTGGAACCCAGGAGTTGTGGTATATGTGAACTCTCGGCCTTGCACCATGCCACGAATGGTGGCAGAATACtgtacgtgtagctgagtgagggcaggggtgtgcagtgcatgttctactaca Alignment from Spaln_aa2Genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGA-CGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC agcacaaaactgagagctagcctaataccttcctctcctttccttaccagAGAGTTGGTGGAACGTGAGGTTACTGACTTTTCCCAAcTGGAACCCAGGAGTTGTGGTATATGTGAACTCTCGGCCTTGCACCATGCCACGAATGGTGGCAGAATACTgtacgtgtagctgagtgagggcaggggtgtgcagtgcatgttctactaca Alignment from Spaln_nt2Genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGAC-GGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC agcacaaaactgagagctagcctaataccttcctctcctttccttaccagAGAGTTGGTGGAACGTGAGGTTACTGACTTTTCCCAACTGGAACCCAGGAGTTGTGGTATATGTGAACTCTCGGCCTTGCACCATGCCACGAATGGTGGCAGAATACTgtacgtgtagctgagtgagggcaggggtgtgcagtgcatgttctactaca Alignment from Pairagon ----------------------------------------------CCAGGGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGAC-GGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC AGCACAAAACTGAGAGCTAGCCTAATACCTTCCTCTCCTTTCCTTACCAGAGAGTTGGTGGAACGTGAGGTTACTGACTTTTCCCAACTGGAACCCAGGAGTTGTGGTATATGTGAACTCTCGGCCTTGCACCATGCCACGAATGGTGGCAGAATACTgtacgtgtagctgagtgagggcaggggtgtgcagtgcatgttctactaca Alignment from Exonerate_protein2genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGG-AACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC agcacaaaactgagagctagcctaataccttcctctcctttccttaccagAGAGTTGGTGGAACGTGAGGTTACTGACTTTTCCCAACTGGAACCCAGGAGTTGTGGTATATGTGAACTCTCGGCCTTGCACCATGCCACGAATGGTGGCAGAATACTgtacgtgtagctgagtgagggcaggggtgtgcagtgcatgttctactaca Alignment from Exonerate_coding2genome GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGG-AACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC agcacaaaactgagagctagcctaataccttcctctcctttccttaccagAGAGTTGGTGGAACGTGAGGTTACTGACTTTTCCCAACTGGAACCCAGGAGTTGTGGTATATGTGAACTCTCGGCCTTGCACCATGCCACGAATGGTGGCAGAATACTgtacgtgtagctgagtgagggcaggggtgtgcagtgcatgttctactaca Alignment from GeneWise GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGA-CGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC agcacaaaactgagagctagcctaataccttcctctcctttccttaccagAGAGTTGGTGGAACGTGAGGTTACTGACTTTTCCCAACTGGAACCCAGGAGTTGTGGTATATGTGAACTCTCGGCCTTGCACCATGCCACGAATGGTGGCAGAATACTgtacgtgtagctgagtgagggcaggggtgtgcagtgcatgttctactaca #### Ms4a10_ID3085_2 --> 0 - 0 Original Alignment GGCTTTCACATCGCCATTGCTTTTGCACACTTGGCCTTTGGTGGCTACTTG-ATCTCCACAGTCAAGAATCTGCACCTGGTGGTGTTGAAGTGCTGGTATCCACTCTGGGGAACTGTCTCT gtccggacacagctaagcatgagcgagcttatgcctcgtccttcctacagGGATTTCACATTGCCATTGCTTTTGCTCATTTAGCCTTTGGTGGGTACTTGCATCTCCACGGTCAAGAATCTGCACCTTGTAGTGCTGAAATGTTGGTATCCACTCTGGGGAACTGTCTCAgtaagtaagttcccatactaaccagcagagtgcactcaggatctctacaa Alignment from CESAR GGCTTTCACATCGCCATTGCTTTTGCACACTTGGCCTTTGGTGGCTACTTG-ATCTCCACAGTCAAGAATCTGCACCTGGTGGTGTTGAAGTGCTGGTATCCACTCTGGGGAACTGTCTCT gtccggacacagctaagcatgagcgagcttatgcctcgtccttcctacagGGATTTCACATTGCCATTGCTTTTGCTCATTTAGCCTTTGGTGGGTACTTGCATCTCCACGGTCAAGAATCTGCACCTTGTAGTGCTGAAATGTTGGTATCCACTCTGGGGAACTGTCTCAgtaagtaagttcccatactaaccagcagagtgcactcaggatctctacaa Alignment from Spaln_aa2Genome GGCTTTCACATCGCCATTGCTTTTGCACACTTGGCCTTTGGTGGCTACTTG-ATCTCCACAGTCAAGAATCTGCACCTGGTGGTGTTGAAGTGCTGGTATCCACTCTGGGGAACTGTCTCT gtccggacacagctaagcatgagcgagcttatgcctcgtccttcctacagGGATTTCACATTGCCATTGCTTTTGCTCATTTAGCCTTTGGTGGGTACTTGcATCTCCACGGTCAAGAATCTGCACCTTGTAGTGCTGAAATGTTGGTATCCACTCTGGGGAACTGTCTCAgtaagtaagttcccatactaaccagcagagtgcactcaggatctctacaa Alignment from Spaln_nt2Genome GGCTTTCACATCGCCATTGCTTTTGCACACTTGGCCTTTGGTGGCTACTTG-ATCTCCACAGTCAAGAATCTGCACCTGGTGGTGTTGAAGTGCTGGTATCCACTCTGGGGAACTGTCTCT gtccggacacagctaagcatgagcgagcttatgcctcgtccttcctacagGGATTTCACATTGCCATTGCTTTTGCTCATTTAGCCTTTGGTGGGTACTTGCATCTCCACGGTCAAGAATCTGCACCTTGTAGTGCTGAAATGTTGGTATCCACTCTGGGGAACTGTCTCAgtaagtaagttcccatactaaccagcagagtgcactcaggatctctacaa Alignment from Pairagon GGCTTTCACATCGCCATTGCTTTTGCACACTTGGCCTTTGGTGGCTACTTG-ATCTCCACAGTCAAGAATCTGCACCTGGTGGTGTTGAAGTGCTGGTATCCACTCTGGGGAACTGTCTCT gtccggacacagctaagcatgagcgagcttatgcctcgtccttcctacagGGATTTCACATTGCCATTGCTTTTGCTCATTTAGCCTTTGGTGGGTACTTGCATCTCCACGGTCAAGAATCTGCACCTTGTAGTGCTGAAATGTTGGTATCCACTCTGGGGAACTGTCTCAgtaagtaagttcccatactaaccagcagagtgcactcaggatctctacaa Alignment from Exonerate_protein2genome GGCTTTCACATCGCCATTGCTTTTGCACACTTGGCCTTTGGTGGCTACTTG-ATCTCCACAGTCAAGAATCTGCACCTGGTGGTGTTGAAGTGCTGGTATCCACTCTGGGGAACTGTCTCT gtccggacacagctaagcatgagcgagcttatgcctcgtccttcctacagGGATTTCACATTGCCATTGCTTTTGCTCATTTAGCCTTTGGTGGGTACTTGCATCTCCACGGTCAAGAATCTGCACCTTGTAGTGCTGAAATGTTGGTATCCACTCTGGGGAACTGTCTCAgtaagtaagttcccatactaaccagcagagtgcactcaggatctctacaa Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GGCTTTCACATCGCCATTGCTTTTGCACACTTGGCCTTTGGTGGCTAC-TTGATCTCCACAGTCAAGAATCTGCACCTGGTGGTGTTGAAGTGCTGGTATCCACTCTGGGGAACTGTCTCT gtccggacacagctaagcatgagcgagcttatgcctcgtccttcctacagGGATTTCACATTGCCATTGCTTTTGCTCATTTAGCCTTTGGTGGGTACTTGCATCTCCACGGTCAAGAATCTGCACCTTGTAGTGCTGAAATGTTGGTATCCACTCTGGGGAACTGTCTCAgtaagtaagttcccatactaaccagcagagtgcactcaggatctctacaa #### Ms4a5_ID3161_4 --> 0 - 0 Original Alignment ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAA-TTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataaggaagcaggcaacctaaatgttgcttttcttttccagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAACTTCATCTGTGGCTATTCCCCAGATGGTATGCAGTGTGGTGTGATTACCATCCTATTCATTgtaaagaacctattctgctgtttaggactaagcagagttgagaaaggggc Alignment from CESAR ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAA-TTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataaggaagcaggcaacctaaatgttgcttttcttttccagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAACTTCATCTGTGGCTATTCCCCAGATGGTATGCAGTGTGGTGTGATTACCATCCTATTCATTgtaaagaacctattctgctgtttaggactaagcagagttgagaaaggggc Alignment from Spaln_aa2Genome ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAA-TTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataaggaagcaggcaacctaaatgttgcttttcttttccagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAAcTTCATCTGTGGCTATTCCCCAGATGGTATGCAGTGTGGTGTGATTACCATCCTATTCATTgtaaagaacctattctgctgtttaggactaagcagagttgagaaaggggc Alignment from Spaln_nt2Genome ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGAT-GGGGAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataaggaagcaggcaacctaaatgttgcttttcttttccagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAACTTCATCTGTGGCTATTCCCCAGATGGTATGCAGTGTGGTGTGATTACCATCCTATTCATTgtaaagaacctattctgctgtttaggactaagcagagttgagaaaggggc Alignment from Pairagon ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAA-TTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataaggaagcaggcaacctaaatgttgcttttcttttccagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAACTTCATCTGTGGCTATTCCCCAGATGGTATGCAGTGTGGTGTGATTACCATCCTATTCATTgtaaagaacctattctgctgtttaggactaagcagagttgagaaaggggc Alignment from Exonerate_protein2genome ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAA-TTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataaggaagcaggcaacctaaatgttgcttttcttttccagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAACTTCATCTGTGGCTATTCCCCAGATGGTATGCAGTGTGGTGTGATTACCATCCTATTCATTgtaaagaacctattctgctgtttaggactaagcagagttgagaaaggggc Alignment from Exonerate_coding2genome ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAA-TTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataaggaagcaggcaacctaaatgttgcttttcttttccagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAACTTCATCTGTGGCTATTCCCCAGATGGTATGCAGTGTGGTGTGATTACCATCCTATTCATTgtaaagaacctattctgctgtttaggactaagcagagttgagaaaggggc Alignment from GeneWise ATAAAAATGAGCCGGGCAATGAATTTACTTAGTGCTCTGGGAGCAGCAGCTGGAATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGG-GAATTCATCTGTGGCTATTCTCCAGATGGTATGCAGTGTGGTGTTATTACCATTCTATTCATT gagcatatgataaggaagcaggcaacctaaatgttgcttttcttttccagATAAAAATGAGCCGGGCAATGAATTTGCTTAGTGCTCTGGGAGCAGCAGCTGGTATCATTCTCCTCATATTTGGCTTCCTTCTAGATGGGGAACTTCATCTGTGGCTATTCCCCAGATGGTATGCAGTGTGGTGTGATTACCATCCTATTCATTgtaaagaacctattctgctgtttaggactaagcagagttgagaaaggggc #### Mta2_ID2532_5 --> 1 - 0 Original Alignment gGGGAAGTGCAGC-GTGACTCTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG aatgactggtgttttcacatcccaagttcttcccttctctttgtctctaggGTAAAGTGCAGTCGTGAGTCTCTTGAATGAGACAGACATCTTAAACCAGTATCTAGACAAGGAAgtatgtagccattgggataaaagggggggtggacactggaggtaggtgag Alignment from CESAR gGGGAAGTGCAGC-GTGACTCTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG aatgactggtgttttcacatcccaagttcttcccttctctttgtctctaggGTAAAGTGCAGTCGTGAGTCTCTTGAATGAGACAGACATCTTAAACCAGTATCTAGACAAGGAAgtatgtagccattgggataaaagggggggtggacactggaggtaggtgag Alignment from Spaln_aa2Genome GGGGAAGTGCAGC-GTGACTCTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG aatgactggtgttttcacatcccaagttcttcccttctctttgtctctagGGTAAAGTGCAGTcGTGAGTCTCTTGAATGAGACAGACATCTTAAACCAGTATCTAGACAAGGAAgtatgtagccattgggataaaagggggggtggacactggaggtaggtgag Alignment from Spaln_nt2Genome GGGGAAGTGCAG-CGTGACTCTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG aatgactggtgttttcacatcccaagttcttcccttctctttgtctctagGGTAAAGTGCAGTCGTGAGTCTCTTGAATGAGACAGACATCTTAAACCAGTATCTAGACAAGGAAgtatgtagccattgggataaaagggggggtggacactggaggtaggtgag Alignment from Pairagon GGGGAAGTGCAG-CGTGACTCTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG aatgactggtgttttcacatcccaagttcttcccttctctttgtctctagGGTAAAGTGCAGTCGTGAGTCTCTTGAATGAGACAGACATCTTAAACCAGTATCTAGACAAGGAAgtatgtagccattgggataaaagggggggtggacactggaggtaggtgag Alignment from Exonerate_protein2genome GGGGAAGTGCAGC-GTGACTCTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG aatgactggtgttttcacatcccaagttcttcccttctctttgtctctagGGTAAAGTGCAGTCGTGAGTCTCTTGAATGAGACAGACATCTTAAACCAGTATCTAGACAAGGAAgtatgtagccattgggataaaagggggggtggacactggaggtaggtgag Alignment from Exonerate_coding2genome GGGGAAGTGCAGC-GTGACTCTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG aatgactggtgttttcacatcccaagttcttcccttctctttgtctctagGGTAAAGTGCAGTCGTGAGTCTCTTGAATGAGACAGACATCTTAAACCAGTATCTAGACAAGGAAgtatgtagccattgggataaaagggggggtggacactggaggtaggtgag Alignment from GeneWise GGGGAAGTGCAGCGTGACTCTCTTGAACGAGACAGACATCTTAAACCAGTATCTAGACAAGGAG aatgactggtgttttcacatcccaagttcttcccttctctttgtctctagggtaaagTGCA------GTCGTGAGTCTCTTGAATGAGACAGACATCTTAAACCAGTATCTAGACAAGGAAgtatgtagccattgggataaaagggggggtggacactggaggtaggtgag #### Mta2_ID2544_17 --> 0 - 2 Original Alignment ATGGCAGGGGCAGGGGTCCCCTTCTCTGCC-AATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCag tatccaccacaatcaggcccgagatggcgttggtgccttgtgtcttgcagATGGCAGGTGCAGGGGTCCCTTTCTCTGTGCAATGGGAGGCCTCTGGCTTCAGGGATTCGTTCAAGTTCTCAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCCGAGGCTCCCAATCCAGTGGTATTTGTAGCCACGAAGGACACCaggtaaataaggagtcaaccaagagaggctggtaacatcaatgtatgtagaa Alignment from CESAR ATGGCAGGGGCAGGGGTCCCCTTCTCTGCC-AATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCag tatccaccacaatcaggcccgagatggcgttggtgccttgtgtcttgcagATGGCAGGTGCAGGGGTCCCTTTCTCTGTGCAATGGGAGGCCTCTGGCTTCAGGGATTCGTTCAAGTTCTCAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCCGAGGCTCCCAATCCAGTGGTATTTGTAGCCACGAAGGACACCaggtaaataaggagtcaaccaagagaggctggtaacatcaatgtatgtagaa Alignment from Spaln_aa2Genome ATGGCAGGGGCAGGGGTCCCCTTCTCT-GCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG tatccaccacaatcaggcccgagatggcgttggtgccttgtgtcttgcagATGGCAGGTGCAGGGGTCCCTTTCTCTgTGCAATGGGAGGCCTCTGGCTTCAGGGATTCGTTCAAGTTCTCAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCCGAGGCTCCCAATCCAGTGGTATTTGTAGCCACGAAGGACACCAGgtaaataaggagtcaaccaagagaggctggtaacatcaatgtatgtagaa Alignment from Spaln_nt2Genome ATGGCAGGGGCAGGGGTCCCCTTCTCTGC-CAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG tatccaccacaatcaggcccgagatggcgttggtgccttgtgtcttgcagATGGCAGGTGCAGGGGTCCCTTTCTCTGTGCAATGGGAGGCCTCTGGCTTCAGGGATTCGTTCAAGTTCTCAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCCGAGGCTCCCAATCCAGTGGTATTTGTAGCCACGAAGGACACCAGgtaaataaggagtcaaccaagagaggctggtaacatcaatgtatgtagaa Alignment from Pairagon ATGGCAGGGGCAGGGGTCCCCTTCTCTGC-CAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG tatccaccacaatcaggcccgagatggcgttggtgccttgtgtcttgcagATGGCAGGTGCAGGGGTCCCTTTCTCTGTGCAATGGGAGGCCTCTGGCTTCAGGGATTCGTTCAAGTTCTCAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCCGAGGCTCCCAATCCAGTGGTATTTGTAGCCACGAAGGACACCAGgtaaataaggagtcaaccaagagaggctggtaacatcaatgtatgtagaa Alignment from Exonerate_protein2genome ATGGCAGGGGCAGGGGTCCCCTTCTCT-GCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG tatccaccacaatcaggcccgagatggcgttggtgccttgtgtcttgcagATGGCAGGTGCAGGGGTCCCTTTCTCTGTGCAATGGGAGGCCTCTGGCTTCAGGGATTCGTTCAAGTTCTCAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCCGAGGCTCCCAATCCAGTGGTATTTGTAGCCACGAAGGACACCAGgtaaataaggagtcaaccaagagaggctggtaacatcaatgtatgtagaa Alignment from Exonerate_coding2genome ATGGCAGGGGCAGGGGTCCCCTTCTCT-GCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG tatccaccacaatcaggcccgagatggcgttggtgccttgtgtcttgcagATGGCAGGTGCAGGGGTCCCTTTCTCTGTGCAATGGGAGGCCTCTGGCTTCAGGGATTCGTTCAAGTTCTCAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCCGAGGCTCCCAATCCAGTGGTATTTGTAGCCACGAAGGACACCAGgtaaataaggagtcaaccaagagaggctggtaacatcaatgtatgtagaa Alignment from GeneWise ATGGCAGGGGCAGGGGTCCCCTTCTCT-GCCAATGGAAGGCCTCTGGCTTCAGGGATTCGTTCAAGCTCACAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCTGATGCTCCCAATCCAGTGGTATTTGTGGCCACAAAGGACACCAG tatccaccacaatcaggcccgagatggcgttggtgccttgtgtcttgcagATGGCAGGTGCAGGGGTCCCTTTCTCTGTGCAATGGGAGGCCTCTGGCTTCAGGGATTCGTTCAAGTTCTCAGCCAGCAGCCAAGCGTCAGAAACTAAACCCTGCCGAGGCTCCCAATCCAGTGGTATTTGTAGCCACGAAGGACACCAGgtaaataaggagtcaaccaagagaggctggtaacatcaatgtatgtagaa #### Myof_ID7468_34 --> 0 - 0 Original Alignment GATGGCTCCAACCTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATACATGGTCCCTCAGGGGATCAGGCCTGTGGTT-CAGCTCACTGCCATTGAG tgtgttttaatgaaagggaagaattattgtggcttctattctggtctcagGACGGATCCAATCTTCCCATCCTTCCATCTCAGAGAGCACCAAACCTATACATGGTCCCACAGGGGATCAGACCTGTGGTACCCGCTCACTGCCATTGAAgtgagaatttgataaccctcatcaagctgtgcaaatgcagggcataggac Alignment from CESAR GATGGCTCCAACCTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATACATGGTCCCTCAGGGGATCAGGCCTGTGGTTCAG-CTCACTGCCATTGAG tgtgttttaatgaaagggaagaattattgtggcttctattctggtctcagGACGGATCCAATCTTCCCATCCTTCCATCTCAGAGAGCACCAAACCTATACATGGTCCCACAGGGGATCAGACCTGTGGTACCCGCTCACTGCCATTGAAgtgagaatttgataaccctcatcaagctgtgcaaatgcagggcataggac Alignment from Spaln_aa2Genome GATGGCTCCAACCTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATACATGGTCCCTCAGGGGATCAGGCCTGTGGTT-CAGCTCACTGCCATTGAG tgtgttttaatgaaagggaagaattattgtggcttctattctggtctcagGACGGATCCAATCTTCCCATCCTTCCATCTCAGAGAGCACCAAACCTATACATGGTCCCACAGGGGATCAGACCTGTGGTAcCCGCTCACTGCCATTGAAgtgagaatttgataaccctcatcaagctgtgcaaatgcagggcataggac Alignment from Spaln_nt2Genome GATGGCTCCAACCTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATACATGGTCCCTCAGGGGATCAGGCCTGTGGTTCA-GCTCACTGCCATTGAG tgtgttttaatgaaagggaagaattattgtggcttctattctggtctcagGACGGATCCAATCTTCCCATCCTTCCATCTCAGAGAGCACCAAACCTATACATGGTCCCACAGGGGATCAGACCTGTGGTACCCGCTCACTGCCATTGAAgtgagaatttgataaccctcatcaagctgtgcaaatgcagggcataggac Alignment from Pairagon GATGGCTCCAACCTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATACATGGTCCCTCAGGGGATCAGGCCTGTGGT-TCAGCTCACTGCCATTGAG tgtgttttaatgaaagggaagaattattgtggcttctattctggtctcagGACGGATCCAATCTTCCCATCCTTCCATCTCAGAGAGCACCAAACCTATACATGGTCCCACAGGGGATCAGACCTGTGGTACCCGCTCACTGCCATTGAAgtgagaatttgataaccctcatcaagctgtgcaaatgcagggcataggac Alignment from Exonerate_protein2genome GATGGCTCCAACCTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATACATGGTCCCTCAGGGGATCAGGCCTGTGGTT-CAGCTCACTGCCATTGAG tgtgttttaatgaaagggaagaattattgtggcttctattctggtctcagGACGGATCCAATCTTCCCATCCTTCCATCTCAGAGAGCACCAAACCTATACATGGTCCCACAGGGGATCAGACCTGTGGTACCCGCTCACTGCCATTGAAgtgagaatttgataaccctcatcaagctgtgcaaatgcagggcataggac Alignment from Exonerate_coding2genome GATGGCTCCAACCTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATACATGGTCCCTCAGGGGATCAGGCCTGTGGTT-CAGCTCACTGCCATTGAG tgtgttttaatgaaagggaagaattattgtggcttctattctggtctcagGACGGATCCAATCTTCCCATCCTTCCATCTCAGAGAGCACCAAACCTATACATGGTCCCACAGGGGATCAGACCTGTGGTACCCGCTCACTGCCATTGAAgtgagaatttgataaccctcatcaagctgtgcaaatgcagggcataggac Alignment from GeneWise GATGGCTCCAACCTTCCCATCCTCCCCTCTCAAAGAGCACCAAACTTATACATGGTCCCTCAGGGGATCAGGCCTGTGGTT-CAGCTCACTGCCATTGAG tgtgttttaatgaaagggaagaattattgtggcttctattctggtctcagGACGGATCCAATCTTCCCATCCTTCCATCTCAGAGAGCACCAAACCTATACATGGTCCCACAGGGGATCAGACCTGTGGTACCCGCTCACTGCCATTGAAgtgagaatttgataaccctcatcaagctgtgcaaatgcagggcataggac #### Myof_ID7493_9 --> 0 - 0 Original Alignment GTTTATAATTCCCATTCTTTG-AGGGCAGATTGTCTGATGGGGGAATTTAAG tgagtgcttgggaggaaagaattttgctaccctactctatcttcccctagATTTACAATTCACATTCTTTGCAGAGCAGATTGTTTTATGGGGGAATTTAAGgtaaccaacacaaccatcatgttcaatgagattagagtaggatcgactga Alignment from CESAR GTTTATAATTCCCATTCTTTG-AGGGCAGATTGTCTGATGGGGGAATTTAAG tgagagcttgggaggaaagaattttgctaccctactctatcttcccctagATTTACAATTCACATTCTTTGCAGAGCAGATTGTTTTATGGGGGAATTTAAGgtaaccaacacaaccatcatgttcaatgagattagagtaggatcgactga Alignment from Spaln_aa2Genome GTTTATAATTCCCATTCTTTG-AGGGCAGATTGTCTGATGGGGGAATTTAAG tgagtgcttgggaggaaagaattttgctaccctactctatcttcccctagATTTACAATTCACATTCTTTGcAGAGCAGATTGTTTTATGGGGGAATTTAAGgtaaccaacacaaccatcatgttcaatgagattagagtaggatcgactga Alignment from Spaln_nt2Genome GTTTATAATTCCCATTCTTTG-AGGGCAGATTGTCTGATGGGGGAATTTAAG tgagtgcttgggaggaaagaattttgctaccctactctatcttcccctagATTTACAATTCACATTCTTTGCAGAGCAGATTGTTTTATGGGGGAATTTAAGgtaaccaacacaaccatcatgttcaatgagattagagtaggatcgactga Alignment from Pairagon GTTTATAATTCCCATTCTTTG-AGGGCAGATTGTCTGATGGGGGAATTTAAG tgagtgcttgggaggaaagaattttgctaccctactctatcttcccctagATTTACAATTCACATTCTTTGCAGAGCAGATTGTTTTATGGGGGAATTTAAGgtaaccaacacaaccatcatgttcaatgagattagagtaggatcgactga Alignment from Exonerate_protein2genome GTTTATAATTCCCATTCTTTG-AGGGCAGATTGTCTGATGGGGGAATTTAAG tgagtgcttgggaggaaagaattttgctaccctactctatcttcccctagATTTACAATTCACATTCTTTGCAGAGCAGATTGTTTTATGGGGGAATTTAAGgtaaccaacacaaccatcatgttcaatgagattagagtaggatcgactga Alignment from Exonerate_coding2genome GTTTATAATTCCCATTCTTTG-AGGGCAGATTGTCTGATGGGGGAATTTAAG tgagtgcttgggaggaaagaattttgctaccctactctatcttcccctagATTTACAATTCACATTCTTTGCAGAGCAGATTGTTTTATGGGGGAATTTAAGgtaaccaacacaaccatcatgttcaatgagattagagtaggatcgactga Alignment from GeneWise tgagtgcttgggaggaaagaattttgctaccctactctatcttcccctagatttacaattcacattctttgcagagcagattgttttatgggggaatttaaggtaaccaacacaaccatcatgttcaatgagattagagtaggatcgactga #### Myrf_ID2720_17 --> 0 - 2 Original Alignment TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGT-CAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCag gcatcttgactctatatagtgctgtgttcacattaactttccccttctagTCATCATCCGCAGTCCCAGACCAAGCCTGCATCAGTCCAGCATTTTCTGCAGGGAACTATCATAGCTCTTGTGGTAGTGATGGCCTTCaggtgagtcccttcaccaaggtgatttccttaaaacaccacacaattgtgta Alignment from CESAR TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGT-CAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCag gcatcttgactctatatagtgctgtgttcacattaactttccccttctagTCATCATCCGCAGTCCCAGACCAAGCCTGCATCAGTCCAGCATTTTCTGCAGGGAACTATCATAGCTCTTGTGGTAGTGATGGCCTTCaggtgagtcccttcaccaaggtgatttccttaaaacaccacacaattgtgta Alignment from Spaln_aa2Genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGT-CAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG gcatcttgactctatatagtgctgtgttcacattaactttccccttctagTCATCATCCGCAGTCCCAGACCAAGCCTGCATCAGTcCAGCATTTTCTGCAGGGAACTATCATAGCTCTTGTGGTAGTGATGGCCTTCAGgtgagtcccttcaccaaggtgatttccttaaaacaccacacaattgtgta Alignment from Spaln_nt2Genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGT-CAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG gcatcttgactctatatagtgctgtgttcacattaactttccccttctagTCATCATCCGCAGTCCCAGACCAAGCCTGCATCAGTCCAGCATTTTCTGCAGGGAACTATCATAGCTCTTGTGGTAGTGATGGCCTTCAGgtgagtcccttcaccaaggtgatttccttaaaacaccacacaattgtgta Alignment from Pairagon TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGT-CAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG gcatcttgactctatatagtgctgtgttcacattaactttccccttctagTCATCATCCGCAGTCCCAGACCAAGCCTGCATCAGTCCAGCATTTTCTGCAGGGAACTATCATAGCTCTTGTGGTAGTGATGGCCTTCAGgtgagtcccttcaccaaggtgatttccttaaaacaccacacaattgtgta Alignment from Exonerate_protein2genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGT-CAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG gcatcttgactctatatagtgctgtgttcacattaactttccccttctagTCATCATCCGCAGTCCCAGACCAAGCCTGCATCAGTCCAGCATTTTCTGCAGGGAACTATCATAGCTCTTGTGGTAGTGATGGCCTTCAGgtgagtcccttcaccaaggtgatttccttaaaacaccacacaattgtgta Alignment from Exonerate_coding2genome TCATCGCCAGCGGTCCCAGACCAGGCCTGCATCAGT-CAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG gcatcttgactctatatagtgctgtgttcacattaactttccccttctagTCATCATCCGCAGTCCCAGACCAAGCCTGCATCAGTCCAGCATTTTCTGCAGGGAACTATCATAGCTCTTGTGGTAGTGATGGCCTTCAGgtgagtcccttcaccaaggtgatttccttaaaacaccacacaattgtgta Alignment from GeneWise TCATCGCCAGCGGTCCCAGACCAGGCCTGCATC-AGTCAGCGTTTTCTGCAGGGAACTATCATAGCTCTGGTGGTGGTCATGGCCTTCAG gcatcttgactctatatagtgctgtgttcacattaactttccccttctagTCATCATCCGCAGTCCCAGACCAAGCCTGCATCAGTCCAGCATTTTCTGCAGGGAACTATCATAGCTCTTGTGGTAGTGATGGCCTTCAGgtgagtcccttcaccaaggtgatttccttaaaacaccacacaattgtgta #### Myrf_ID2721_16 --> 1 - 0 Original Alignment cCATGCAGGGAGCCAGTTT-AGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG gaaggtgcagtaggtgagcatgcatttctcctcatgttctcttgtcacagcCATGCTGGTAGTGAGTTTCAGTAGGGCAGGCAGTGTCCCTCACAAAAAGAGGCCCCCTAGACTTGCCAATAAGgtatgtcagtccaatagtgaaggcttctactcacctgtgttctatatctg Alignment from CESAR cCATGCAGGGAGCCAGTTT-AGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG gaaggtgcagtaggtgagcatgcatttctcctcatgttctcttgtcacagcCATGCTGGTAGTGAGTTTCAGTAGGGCAGGCAGTGTCCCTCACAAAAAGAGGCCCCCTAGACTTGCCAATAAGgtatgtcagtccaatagtgaaggcttctactcacctgtgttctatatctg Alignment from Spaln_aa2Genome CCATGCAGGGAGCCAGTTT-AGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG gaaggtgcagtaggtgagcatgcatttctcctcatgttctcttgtcacagCCATGCTGGTAGTGAGTTTcAGTAGGGCAGGCAGTGTCCCTCACAAAAAGAGGCCCCCTAGACTTGCCAATAAGgtatgtcagtccaatagtgaaggcttctactcacctgtgttctatatctg Alignment from Spaln_nt2Genome CCATGCAGGGAGCCAGTTT-AGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG gaaggtgcagtaggtgagcatgcatttctcctcatgttctcttgtcacagCCATGCTGGTAGTGAGTTTCAGTAGGGCAGGCAGTGTCCCTCACAAAAAGAGGCCCCCTAGACTTGCCAATAAGgtatgtcagtccaatagtgaaggcttctactcacctgtgttctatatctg Alignment from Pairagon CCATGCAGGGAGCCAGTTT-AGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG gaaggtgcagtaggtgagcatgcatttctcctcatgttctcttgtcacagCCATGCTGGTAGTGAGTTTCAGTAGGGCAGGCAGTGTCCCTCACAAAAAGAGGCCCCCTAGACTTGCCAATAAGgtatgtcagtccaatagtgaaggcttctactcacctgtgttctatatctg Alignment from Exonerate_protein2genome CCATGCAGGGAGCCAG-TTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG gaaggtgcagtaggtgagcatgcatttctcctcatgttctcttgtcacagCCATGCTGGTAGTGAGTTTCAGTAGGGCAGGCAGTGTCCCTCACAAAAAGAGGCCCCCTAGACTTGCCAATAAGgtatgtcagtccaatagtgaaggcttctactcacctgtgttctatatctg Alignment from Exonerate_coding2genome CCATGCAGGGAGCCAG-TTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG gaaggtgcagtaggtgagcatgcatttctcctcatgttctcttgtcacagCCATGCTGGTAGTGAGTTTCAGTAGGGCAGGCAGTGTCCCTCACAAAAAGAGGCCCCCTAGACTTGCCAATAAGgtatgtcagtccaatagtgaaggcttctactcacctgtgttctatatctg Alignment from GeneWise CCATGCAGGGAGCCAGTTTAGCCGGGCAGGCAGTGTCCCCCACAAAAAGAGGCCCCCTAAACTGGCCAATAAG gaaggtgcagtaggtgagcatgcatttctcctcatgttctcttgtcacagccatgctggtagtgagT---------------TTCAGTAGGGCAGGCAGTGTCCCTCACAAAAAGAGGCCCCCTAGACTTGCCAATAAGgtatgtcagtccaatagtgaaggcttctactcacctgtgttctatatctg #### Myrf_ID2722_15 --> 0 - 2 Original Alignment GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACT-GGCAGCTCAGGGGCTTTCag tggcaggcagatacaatgagtgattatcttctctttaccatccatcaaagGAGCGAATCTTCATGGAGAATGTGGGGGTTGTGAAGGAGTTATGCAAACTGAGAGACAACCTAGAGACTCGCATTGATGAGTTGGAACGATGGAGCCACAAGTTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTCGGCAGCTCAGGGGCTTTCaggtaaccgcaccagggaggtgggcaggagtgggcaagataagaagaggagg Alignment from CESAR GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACT-GGCAGCTCAGGGGCTTTCag tggcaggcagatacaatgagtgattatcttctctttaccatccatcaaagGAGCGAATCTTCATGGAGAATGTGGGGGTTGTGAAGGAGTTATGCAAACTGAGAGACAACCTAGAGACTCGCATTGATGAGTTGGAACGATGGAGCCACAAGTTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTCGGCAGCTCAGGGGCTTTCaggtaaccgcaccagggaggtgggcaggagtgggcaagataagaagaggagg Alignment from Spaln_aa2Genome GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACT-GGCAGCTCAGGGGCTTTCAG tggcaggcagatacaatgagtgattatcttctctttaccatccatcaaagGAGCGAATCTTCATGGAGAATGTGGGGGTTGTGAAGGAGTTATGCAAACTGAGAGACAACCTAGAGACTCGCATTGATGAGTTGGAACGATGGAGCCACAAGTTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTcGGCAGCTCAGGGGCTTTCAGgtaaccgcaccagggaggtgggcaggagtgggcaagataagaagaggagg Alignment from Spaln_nt2Genome GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACT-GGCAGCTCAGGGGCTTTCAG tggcaggcagatacaatgagtgattatcttctctttaccatccatcaaagGAGCGAATCTTCATGGAGAATGTGGGGGTTGTGAAGGAGTTATGCAAACTGAGAGACAACCTAGAGACTCGCATTGATGAGTTGGAACGATGGAGCCACAAGTTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTCGGCAGCTCAGGGGCTTTCAGgtaaccgcaccagggaggtgggcaggagtgggcaagataagaagaggagg Alignment from Pairagon GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACT-GGCAGCTCAGGGGCTTTCAG tggcaggcagatacaatgagtgattatcttctctttaccatccatcaaagGAGCGAATCTTCATGGAGAATGTGGGGGTTGTGAAGGAGTTATGCAAACTGAGAGACAACCTAGAGACTCGCATTGATGAGTTGGAACGATGGAGCCACAAGTTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTCGGCAGCTCAGGGGCTTTCAGgtaaccgcaccagggaggtgggcaggagtgggcaagataagaagaggagg Alignment from Exonerate_protein2genome GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACT-GGCAGCTCAGGGGCTTTCAG tggcaggcagatacaatgagtgattatcttctctttaccatccatcaaagGAGCGAATCTTCATGGAGAATGTGGGGGTTGTGAAGGAGTTATGCAAACTGAGAGACAACCTAGAGACTCGCATTGATGAGTTGGAACGATGGAGCCACAAGTTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTCGGCAGCTCAGGGGCTTTCAGgtaaccgcaccagggaggtgggcaggagtgggcaagataagaagaggagg Alignment from Exonerate_coding2genome GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACT-GGCAGCTCAGGGGCTTTCAG tggcaggcagatacaatgagtgattatcttctctttaccatccatcaaagGAGCGAATCTTCATGGAGAATGTGGGGGTTGTGAAGGAGTTATGCAAACTGAGAGACAACCTAGAGACTCGCATTGATGAGTTGGAACGATGGAGCCACAAGTTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTCGGCAGCTCAGGGGCTTTCAGgtaaccgcaccagggaggtgggcaggagtgggcaagataagaagaggagg Alignment from GeneWise GAGCGAATCTTCATGGAGAATGTGGGGGCTGTGAAGGAGTTATGCAAACTGACAGACAACCTAGAGACTCGCATTGATGAGTTGGAGCGATGGAGCCACAAGCTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCA-ACTGGCAGCTCAGGGGCTTTCAG tggcaggcagatacaatgagtgattatcttctctttaccatccatcaaagGAGCGAATCTTCATGGAGAATGTGGGGGTTGTGAAGGAGTTATGCAAACTGAGAGACAACCTAGAGACTCGCATTGATGAGTTGGAACGATGGAGCCACAAGTTGGCCAAGCTGCGGCGCCTTGACAGCCTCAAGTCAACTCGGCAGCTCAGGGGCTTTCAGgtaaccgcaccagggaggtgggcaggagtgggcaagataagaagaggagg #### Myrf_ID2724_13 --> 0 - 1 Original Alignment GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGA-TACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAg gtgctgaggtcactgtgcccacggactacataatgctaaaataatttcagGTTGATACCACTGAACACCTAAAGAGGATCTCACGGACGCGTTTAGTGCACTACAGGCTACAAGCCGGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAggtgcgtatgtgtgtctgaagggttcccaactatgcctgagttctctcaga Alignment from CESAR GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGA-TACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAg gtgctgaggtcactgtgcccacggactacataatgctaaaataatttcagGTTGATACCACTGAACACCTAAAGAGGATCTCACGGACGCGTTTAGTGCACTACAGGCTACAAGCCGGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAggtgcgtatgtgtgtctgaagggttcccaactatgcctgagttctctcaga Alignment from Spaln_aa2Genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGA-TACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgctgaggtcactgtgcccacggactacataatgctaaaataatttcagGTTGATACCACTGAACACCTAAAGAGGATCTCACGGACGCGTTTAGTGCACTACAGGcTACAAGCCGGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtgcgtatgtgtgtctgaagggttcccaactatgcctgagttctctcaga Alignment from Spaln_nt2Genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGA-TACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgctgaggtcactgtgcccacggactacataatgctaaaataatttcagGTTGATACCACTGAACACCTAAAGAGGATCTCACGGACGCGTTTAGTGCACTACAGGCTACAAGCCGGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtgcgtatgtgtgtctgaagggttcccaactatgcctgagttctctcaga Alignment from Pairagon GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGA-TACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgctgaggtcactgtgcccacggactacataatgctaaaataatttcagGTTGATACCACTGAACACCTAAAGAGGATCTCACGGACGCGTTTAGTGCACTACAGGCTACAAGCCGGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtgcgtatgtgtgtctgaagggttcccaactatgcctgagttctctcaga Alignment from Exonerate_protein2genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGA-TACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgctgaggtcactgtgcccacggactacataatgctaaaataatttcagGTTGATACCACTGAACACCTAAAGAGGATCTCACGGACGCGTTTAGTGCACTACAGGCTACAAGCCGGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtgcgtatgtgtgtctgaagggttcccaactatgcctgagttctctcaga Alignment from Exonerate_coding2genome GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTACAGA-TACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgctgaggtcactgtgcccacggactacataatgctaaaataatttcagGTTGATACCACTGAACACCTAAAGAGGATCTCACGGACGCGTTTAGTGCACTACAGGCTACAAGCCGGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtgcgtatgtgtgtctgaagggttcccaactatgcctgagttctctcaga Alignment from GeneWise GTGGACACCACCGAGCAGCTGAAGAGGATCTCTCGGATGCGGCTGGTGCACTAC-AGATACAAGCCTGAGTTCGCTGCTAGCGCAGGCATTGAAGCCACCGCACCGGAGACAG gtgctgaggtcactgtgcccacggactacataatgctaaaataatttcagGTTGATACCACTGAACACCTAAAGAGGATCTCACGGACGCGTTTAGTGCACTACAGGCTACAAGCCGGAGTTTGCTGCCAGTGCAGGCATTGAAGCCACTGCACCAGAGACAGgtgcgtatgtgtgtctgaagggttcccaactatgcctgagttctctcaga #### Myrf_ID2725_12 --> 0 - 0 Original Alignment GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAAC-GTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG aggtaattgactcaccaggtctcaaatagcacccgtgtttcttctttcagGCCTCTAACCCAGGGCCGTTT---AGTGATAGTGATGTGTTATGGCAACGGGCACAACTA---GATACAGTTTTTCACCCTGGCCGTGTGGGTATTAACTCTGACCTGCCAGATGACGCATTAGTTGTACATGGAAATCGTGAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCAGGCCAAGGACCATGTGCAGGAGgtgagttgtgcaggaggtgcatgggcatcccctgcataactggattgtgt Alignment from CESAR GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAAC-GTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG aggtaattgactcaccaggtctcaaatagcacccgtgtttcttctttcagGCCTCTAACCCAGGGCCGTTT---AGTGATAGTGATGTGTTATGGCAACGGGCACAACTA---GATACAGTTTTTCACCCTGGCCGTGTGGGTATTAACTCTGACCTGCCAGATGACGCATTAGTTGTACATGGAAATCGTGAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCAGGCCAAGGACCATGTGCAGGAGgtgagttgtgcaggaggtgcatgggcatcccctgcataactggattgtgt Alignment from Spaln_aa2Genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAAC-GTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG aggtaattgactcaccaggtctcaaatagcacccgtgtttcttctttcagGCCTCTAACCCAGGGCCGTTT---AGTGATAGTGATGTGTTATGGCAACGGGCACAACTA---GATACAGTTTTTCACCCTGGCCGTGTGGGTATTAACTCTGACCTGCCAGATGACGCATTAGTTGTACATGGAAATcGTGAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCAGGCCAAGGACCATGTGCAGGAGgtgagttgtgcaggaggtgcatgggcatcccctgcataactggattgtgt Alignment from Spaln_nt2Genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAA-CGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG aggtaattgactcaccaggtctcaaatagcacccgtgtttcttctttcagGCCTCTAACCCAGGGCCGTTT---AGTGATAGTGATGTGTTATGGCAACGGGCACAACT---AGATACAGTTTTTCACCCTGGCCGTGTGGGTATTAACTCTGACCTGCCAGATGACGCATTAGTTGTACATGGAAATCGTGAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCAGGCCAAGGACCATGTGCAGGAGgtgagttgtgcaggaggtgcatgggcatcccctgcataactggattgtgt Alignment from Pairagon GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAA-CGTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG aggtaattgactcaccaggtctcaaatagcacccgtgtttcttctttcagGCCTCTAACCCAGGGCCGTTT---AGTGATAGTGATGTGTTATGGCAACGGGCACAACT---AGATACAGTTTTTCACCCTGGCCGTGTGGGTATTAACTCTGACCTGCCAGATGACGCATTAGTTGTACATGGAAATCGTGAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCAGGCCAAGGACCATGTGCAGGAGgtgagttgtgcaggaggtgcatgggcatcccctgcataactggattgtgt Alignment from Exonerate_protein2genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAAC-GTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG aggtaattgactcaccaggtctcaaatagcacccgtgtttcttctttcagGCCTCTAACCCAGGGCCGTTT---AGTGATAGTGATGTGTTATGGCAACGGGCACAACTA---GATACAGTTTTTCACCCTGGCCGTGTGGGTATTAACTCTGACCTGCCAGATGACGCATTAGTTGTACATGGAAATCGTGAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCAGGCCAAGGACCATGTGCAGGAGgtgagttgtgcaggaggtgcatgggcatcccctgcataactggattgtgt Alignment from Exonerate_coding2genome GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAAC-GTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG aggtaattgactcaccaggtctcaaatagcacccgtgtttcttctttcagGCCTCTAACCCAGGGCCGTTT---AGTGATAGTGATGTGTTATGGCAACGGGCACAACTA---GATACAGTTTTTCACCCTGGCCGTGTGGGTATTAACTCTGACCTGCCAGATGACGCATTAGTTGTACATGGAAATCGTGAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCAGGCCAAGGACCATGTGCAGGAGgtgagttgtgcaggaggtgcatgggcatcccctgcataactggattgtgt Alignment from GeneWise GCCTCTAACCCAGGCCAGTTTGAAAGTGACAGTGACGTGCTGTGGCAACGGGCGCAGCTGCCAGATACGGTCTTCCACCATGGCCGTGTGGGCATCAACACCGACCGGCCAGATGAGGCATTGGTCGTCCACGGCAAC-GTGAAGGTCATGGGTTCTCTTATGCACCCTTCCGATCTGCGGGCCAAGGAGCACGTGCAGGAG aggtaattgactcaccaggtctcaaatagcacccgtgtttcttctttcagGCCTCTAACCCAGGGCCGTTT---AGTGATAGTGATGTGTTATGGCAACGGGCACAACTA---GATACAGTTTTTCACCCTGGCCGTGTGGGTATTAACTCTGACCTGCCAGATGACGCATTAGTTGTACATGGAAATCGTGAAGGTCATGGGTTCCCTTATGCACCTTTCTGATCTGCAGGCCAAGGACCATGTGCAGGAGgtgagttgtgcaggaggtgcatgggcatcccctgcataactggattgtgt #### Myrf_ID2727_10 --> 1 - 2 Original Alignment gGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAG-ACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGag tggtggcggcttgctagaaaattctgctagaatgctccttcctctttcagaGTTAATCTTCCACCTGAGCAGGTTACACAGGTAACTGTGGGG---CTCCATTTCACTGAGCACCACTGCCAACAACATGAGCAAGAAAGGCAAGCCCAACCCTGACCAGaggtgagtaagttgtatttgccccaagatccctcacacctacatacctgcac Alignment from CESAR gGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAG-ACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGag tggtggcggcttgctagaaaattctgctagaatgctccttcctctttcagaGTTAATCTTCCACCTGAGCAGGTTACACAGGTAACTGTGGGG---CTCCATTTCACTGAGCACCACTGCCAACAACATGAGCAAGAAAGGCAAGCCCAACCCTGACCAGaggtgagtaagttgtatttgccccaagatccctcacacctacatacctgcac Alignment from Spaln_aa2Genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAG-ACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tggtggcggcttgctagaaaattctgctagaatgctccttcctctttcagAGTTAATCTTCCACCTGAGCAGGTTACACAGGTAACTGTGGGG---CTCCATTTCACTGAGcACCACTGCCAACAACATGAGCAAGAAAGGCAAGCCCAACCCTGACCAGAGgtgagtaagttgtatttgccccaagatccctcacacctacatacctgcac Alignment from Spaln_nt2Genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAG-ACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tggtggcggcttgctagaaaattctgctagaatgctccttcctctttcagAGTTAATCTTCCACCTGAGCAGGTTACACAGGTAACTGTGG---GGCTCCATTTCACTGAGCACCACTGCCAACAACATGAGCAAGAAAGGCAAGCCCAACCCTGACCAGAGgtgagtaagttgtatttgccccaagatccctcacacctacatacctgcac Alignment from Pairagon GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAG-ACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tggtggcggcttgctagaaaattctgctagaatgctccttcctctttcagAGTTAATCTTCCACCTGAGCAGGTTACACAGGTAACTGTGG---GGCTCCATTTCACTGAGCACCACTGCCAACAACATGAGCAAGAAAGGCAAGCCCAACCCTGACCAGAGgtgagtaagttgtatttgccccaagatccctcacacctacatacctgcac Alignment from Exonerate_protein2genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAG-ACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tggtggcggcttgctagaaaattctgctagaatgctccttcctctttcagAGTTAATCTTCCACCTGAGCAGGTTACACAGGTAACTGTGGGG---CTCCATTTCACTGAGCACCACTGCCAACAACATGAGCAAGAAAGGCAAGCCCAACCCTGACCAGAGgtgagtaagttgtatttgccccaagatccctcacacctacatacctgcac Alignment from Exonerate_coding2genome GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAG-ACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tggtggcggcttgctagaaaattctgctagaatgctccttcctctttcagAGTTAATCTTCCACCTGAGCAGGTTACACAGGTAACTGTGGGG---CTCCATTTCACTGAGCACCACTGCCAACAACATGAGCAAGAAAGGCAAGCCCAACCCTGACCAGAGgtgagtaagttgtatttgccccaagatccctcacacctacatacctgcac Alignment from GeneWise GGTCAATCTTCCCCCTGAGCAGGTCACAAAAGTGACCGTGGGGCGGCTCCATTTCAGTGAG-ACCACTGCCAACAACATGCGCAAGAAGGGCAAGCCCAACCCTGACCAGAG tggtggcggcttgctagaaaattctgctagaatgctccttcctctttcagAGTTAATCTTCCACCTGAGCAGGTTACACAGGTAACTGTGGGG---CTCCATTTCACTGAGCACCACTGCCAACAACATGAGCAAGAAAGGCAAGCCCAACCCTGACCAGAGgtgagtaagttgtatttgccccaagatccctcacacctacatacctgcac #### Naa40_ID2073_7 --> 1 - 2 Original Alignment cACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGC-GCCTATCAGTTCTTCCGAGAGGCACTGca ggaaagaggccgactatgtctgtaggtgtgctaatttctctgtcttctagcACACAGAGAAAGAAAGTTATGTTAACTGTGTTTAAACACAATCATGGTCGCCTACCAGTTCTTCCATGAGACACTTcagtaagtaacaagtattcaactcagggatcaaaatttagttaggaagaaca Alignment from CESAR cACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGC-GCCTATCAGTTCTTCCGAGAGGCACTGca ggaaagaggccgactatgtctgtaggtgtgctaatttctctgtcttctagcACACAGAGAAAGAAAGTTATGTTAACTGTGTTTAAACACAATCATGGTCGCCTACCAGTTCTTCCATGAGACACTTcagtaagtaacaagtattcaactcagggatcaaaatttagttaggaagaaca Alignment from Spaln_aa2Genome CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGC-GCCTATCAGTTCTTCCGAGAGGCACTGCA ggaaagaggccgactatgtctgtaggtgtgctaatttctctgtcttctagCACACAGAGAAAGAAAGTTATGTTAACTGTGTTTAAACACAATCATGGTcGCCTACCAGTTCTTCCATGAGACACTTCAgtaagtaacaagtattcaactcagggatcaaaatttagttaggaagaaca Alignment from Spaln_nt2Genome CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGG-CGCCTATCAGTTCTTCCGAGAGGCACTGCA ggaaagaggccgactatgtctgtaggtgtgctaatttctctgtcttctagCACACAGAGAAAGAAAGTTATGTTAACTGTGTTTAAACACAATCATGGTCGCCTACCAGTTCTTCCATGAGACACTTCAgtaagtaacaagtattcaactcagggatcaaaatttagttaggaagaaca Alignment from Pairagon CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGG-CGCCTATCAGTTCTTCCGAGAGGCACTGCA ggaaagaggccgactatgtctgtaggtgtgctaatttctctgtcttctagCACACAGAGAAAGAAAGTTATGTTAACTGTGTTTAAACACAATCATGGTCGCCTACCAGTTCTTCCATGAGACACTTCAgtaagtaacaagtattcaactcagggatcaaaatttagttaggaagaaca Alignment from Exonerate_protein2genome CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGC-GCCTATCAGTTCTTCCGAGAGGCACTGCA ggaaagaggccgactatgtctgtaggtgtgctaatttctctgtcttctagCACACAGAGAAAGAAAGTTATGTTAACTGTGTTTAAACACAATCATGGTCGCCTACCAGTTCTTCCATGAGACACTTCAgtaagtaacaagtattcaactcagggatcaaaatttagttaggaagaaca Alignment from Exonerate_coding2genome ggaaagaggccgactatgtctgtaggtgtgctaatttctctgtcttctagcacacagagaaagaaagttatgttaactgtgtttaaacacaatcatggtcgcctaccagttcttccatgagacacttcagtaagtaacaagtattcaactcagggatcaaaatttagttaggaagaaca Alignment from GeneWise CACACAGATGAAGAAGGTGATGTTAACTGTTTTTAAACATAATCATGGC-GCCTATCAGTTCTTCCGAGAGGCACTGCA ggaaagaggccgactatgtctgtaggtgtgctaatttctctgtcttctagCACACAGAGAAAGAAAGTTATGTTAACTGTGTTTAAACACAATCATGGTCGCCTACCAGTTCTTCCATGAGACACTTCAgtaagtaacaagtattcaactcagggatcaaaatttagttaggaagaaca #### Naaladl1_ID1443_2 --> 1 - 1 Original Alignment aGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCC-TTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCg ctgctgatggattctattctcctccgtattcttttcttcctctattttagaGAGCTTGCAAAGGAACCACATGTCGCCACCAGCACTCGAGATGATGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCGGGACTGGACTCAGCCAAGACCTATGAATATCGGGTGTTGCTCGCTCTTCCCTAATGCAGAGCAGGCTAACAGTGTGGAAGTTggtgcgagtctagaaatgtcaaggcaggatggagccactgattcctgtgtg Alignment from CESAR aGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCC-TTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCg ctgctgatggattctattctcctccgtattcttttcttcctctattttagaGAGCTTGCAAAGGAACCACATGTCGCCACCAGCACTCGAGATGATGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCGGGACTGGACTCAGCCAAGACCTATGAATATCGGGTGTTGCTCGCTCTTCCCTAATGCAGAGCAGGCTAACAGTGTGGAAGTTggtgcgagtctagaaatgtcaaggcaggatgggtatttgctgtgctctctt Alignment from Spaln_aa2Genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCC-TTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG ctgctgatggattctattctcctccgtattcttttcttcctctattttagAGAGCTTGCAAAGGAACCACATGTCGCCACCAGCACTCGAGATGATGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCGGGACTGGACTCAGCCAAGACCTATGAATATCGGGTGTTGCTCGCTcTTCCCTAATGCAGAGCAGGCTAACAGTGTGGAAGTTGgtgcgagtctagaaatgtcaaggcaggatggagccactgattcctgtgtg Alignment from Spaln_nt2Genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTC-CTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG ctgctgatggattctattctcctccgtattcttttcttcctctattttagAGAGCTTGCAAAGGAACCACATGTCGCCACCAGCACTCGAGATGATGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCGGGACTGGACTCAGCCAAGACCTATGAATATCGGGTGTTGCTCGCTCTTCCCTAATGCAGAGCAGGCTAACAGTGTGGAAGTTGgtgcgagtctagaaatgtcaaggcaggatggagccactgattcctgtgtg Alignment from Pairagon AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTC-CTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG ctgctgatggattctattctcctccgtattcttttcttcctctattttagAGAGCTTGCAAAGGAACCACATGTCGCCACCAGCACTCGAGATGATGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCGGGACTGGACTCAGCCAAGACCTATGAATATCGGGTGTTGCTCGCTCTTCCCTAATGCAGAGCAGGCTAACAGTGTGGAAGTTGgtgcgagtctagaaatgtcaaggcaggatggagccactgattcctgtgtg Alignment from Exonerate_protein2genome AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTCTCC-TTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG ctgctgatggattctattctcctccgtattcttttcttcctctattttagAGAGCTTGCAAAGGAACCACATGTCGCCACCAGCACTCGAGATGATGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCGGGACTGGACTCAGCCAAGACCTATGAATATCGGGTGTTGCTCGCTCTTCCCTAATGCAGAGCAGGCTAACAGTGTGGAAGTTGgtgcgagtctagaaatgtcaaggcaggatggagccactgattcctgtgtg Alignment from Exonerate_coding2genome ctgctgatggattctattctcctccgtattcttttcttcctctattttagagagcttgcaaaggaaccacatgtcgccaccagcactcgagatgatgccctggttcagctgctgctggggcgttggaaggatacagcaccgggactggactcagccaagacctatgaatatcgggtgttgctcgctcttccctaatgcagagcaggctaacagtgtggaagttggtgcgagtctagaaatgtcaaggcaggatggagccactgattcctgtgtg Alignment from GeneWise AGAACTCTCCAAGGAACCACACGTGGCCACCAGCCCTCGGGACGAAGCCCTGGTGCAGCTGCTGCTGGGGCGCTGGAAGGATACAGCGACTGGGCTGGACTCAGCCAAGACCTATGAGTATAGGGTCCTGCTC-TCCTTCCCCAACGCAGAGCAGCCTAACAGCGTGGAAGTCG ctgctgatggattctattctcctccgtattcttttcttcctctattttagAGAGCTTGCAAAGGAACCACATGTCGCCACCAGCACTCGAGATGATGCCCTGGTTCAGCTGCTGCTGGGGCGTTGGAAGGATACAGCACCGGGACTGGACTCAGCCAAGACCTATGAATATCGGGTGTTGCTCGCTCTTCCCTAATGCAGAGCAGGCTAACAGTGTGGAAGTTGgtgcgagtctagaaatgtcaaggcaggatggagccactgattcctgtgtg #### Naaladl1_ID1447_6 --> 1 - 2 Original Alignment tAACCTCACCGGAACCTCTGCCCCTGCCTTCTGG-CAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGag aattgaaggtaatgacacagcctgccctgccatgtttttgaatcttatagtAACCTCACAGGAACTTCTGCCCCTACTTTCTGGCCAGAGAGCTCTAGGCTGTGAATACAAACTAGGACCTGGATTTGAGCCAAATGAAAGTTTCCCTGATGGAaggtatgtcaggacacatgaatctaagtccccttgagggggccccagaatct Alignment from CESAR tAACCTCACCGGAACCTCTGCCCCTGCCTTCTGG-CAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGag aattgaaggtaatgacacagcctgccctgccatgtttttgaatcttatagtAACCTCACAGGAACTTCTGCCCCTACTTTCTGGCCAGAGAGCTCTAGGCTGTGAATACAAACTAGGACCTGGATTTGAGCCAAATGAAAGTTTCCCTGATGGAaggtatgtcaggacacatgaatctaagtccccttgagggggccccagaatct Alignment from Spaln_aa2Genome TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGG-CAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgaaggtaatgacacagcctgccctgccatgtttttgaatcttatagTAACCTCACAGGAACTTCTGCCCCTACTTTCTGGcCAGAGAGCTCTAGGCTGTGAATACAAACTAGGACCTGGATTTGAGCCAAATGAAAGTTTCCCTGATGGAAGgtatgtcaggacacatgaatctaagtccccttgagggggccccagaatct Alignment from Spaln_nt2Genome TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGG-CAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgaaggtaatgacacagcctgccctgccatgtttttgaatcttatagTAACCTCACAGGAACTTCTGCCCCTACTTTCTGGCCAGAGAGCTCTAGGCTGTGAATACAAACTAGGACCTGGATTTGAGCCAAATGAAAGTTTCCCTGATGGAAGgtatgtcaggacacatgaatctaagtccccttgagggggccccagaatct Alignment from Pairagon TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGG-CAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgaaggtaatgacacagcctgccctgccatgtttttgaatcttatagTAACCTCACAGGAACTTCTGCCCCTACTTTCTGGCCAGAGAGCTCTAGGCTGTGAATACAAACTAGGACCTGGATTTGAGCCAAATGAAAGTTTCCCTGATGGAAGgtatgtcaggacacatgaatctaagtccccttgagggggccccagaatct Alignment from Exonerate_protein2genome TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGG-CAGGGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgaaggtaatgacacagcctgccctgccatgtttttgaatcttatagTAACCTCACAGGAACTTCTGCCCCTACTTTCTGGCCAGAGAGCTCTAGGCTGTGAATACAAACTAGGACCTGGATTTGAGCCAAATGAAAGTTTCCCTGATGGAAGgtatgtcaggacacatgaatctaagtccccttgagggggccccagaatct Alignment from Exonerate_coding2genome aattgaaggtaatgacacagcctgccctgccatgtttttgaatcttatagtaacctcacaggaacttctgcccctactttctggccagagagctctaggctgtgaatacaaactaggacctggatttgagccaaatgaaagtttccctgatggaaggtatgtcaggacacatgaatctaagtccccttgagggggccccagaatct Alignment from GeneWise TAACCTCACCGGAACCTCTGCCCCTGCCTTCTGGCAG-GGGGCCCTGGGCTGTGAGTACAAGCTGGGACCCGGCTTTGAGCCGAATGGAAGCTTCCCTGCTGGGAG aattgaaggtaatgacacagcctgccctgccatgtttttgaatcttatagTAACCTCACAGGAACTTCTGCCCCTACTTTCTGGCCAGAGAGCTCTAGGCTGTGAATACAAACTAGGACCTGGATTTGAGCCAAATGAAAGTTTCCCTGATGGAAGgtatgtcaggacacatgaatctaagtccccttgagggggccccagaatct #### Naaladl1_ID1452_11 --> 2 - 0 Original Alignment ccAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCT-GCCACCAAAGAG caggaagtgatgcgttcacagccaacaggttttttatctgttttctacagcaAATACTACTCTGCAGGCCCAGGGCACACCACCGGTACAAGGTGTGCTCTTTTCTCTCAACCAAAGATgtaagtaggtgatcttcaaaggagttaggctcgaccacaccatcccgggc Alignment from CESAR ccAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCT-GCCACCAAAGAG caggaagtgatgcgttcacagccaacaggttttttatctgttttctacagcaAATACTACTCTGCAGGCCCAGGGCACACCACCGGTACAAGGTGTGCTCTTTTCTCTCAACCAAAGATgtaagtaggtgatcttcaaaggagttaggctcgaccacaccatcccgggc Alignment from Spaln_aa2Genome CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAGATCAG caggaagtgatgcgttcacagccaacaggttttttatctgttttctacagCAAATACTACTCTGCAGGCCCAGGGCACACCACCGGTACAAGGTGTGCTCTTTTCTCTCAACCAAAGATGTAAgtaggtgatcttcaaaggagttaggctcgaccacaccatcccgggc Alignment from Spaln_nt2Genome CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCA-CCAAAGAG caggaagtgatgcgttcacagccaacaggttttttatctgttttctacagCAAATACTACTCTGCAGGCCCAGGGCACACCACCGGTACAAGGTGTGCTCTTTTCTCTCAACCAAAGATgtaagtaggtgatcttcaaaggagttaggctcgaccacaccatcccgggc Alignment from Pairagon CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCC-ACCAAAGAG caggaagtgatgcgttcacagccaacaggttttttatctgttttctacagCAAATACTACTCTGCAGGCCCAGGGCACACCACCGGTACAAGGTGTGCTCTTTTCTCTCAACCAAAGATgtaagtaggtgatcttcaaaggagttaggctcgaccacaccatcccgggc Alignment from Exonerate_protein2genome CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCT-GCCACCAAAGAG caggaagtgatgcgttcacagccaacaggttttttatctgttttctacagCAAATACTACTCTGCAGGCCCAGGGCACACCACCGGTACAAGGTGTGCTCTTTTCTCTCAACCAAAGATgtaagtaggtgatcttcaaaggagttaggctcgaccacaccatcccgggc Alignment from Exonerate_coding2genome CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCT-GCCACCAAAGAG caggaagtgatgcgttcacagccaacaggttttttatctgttttctacagCAAATACTACTCTGCAGGCCCAGGGCACACCACCGGTACAAGGTGTGCTCTTTTCTCTCAACCAAAGATgtaagtaggtgatcttcaaaggagttaggctcgaccacaccatcccgggc Alignment from GeneWise CCAATGCTACCCTCCGGGCACAGGGAACACCTCCTGTACAAAGTGTGATCTTCTCTGCCACCAAAGAGATCAG caggaagtgatgcgttcacagccaacaggttttttatctgttttctacagCAAATACTACTCTGCAGGCCCAGGGCACACCACCGGTACAAGGTGTGCTCTTTTCTCTCAACCAAAGATGTAAgtaggtgatcttcaaaggagttaggctcgaccacaccatcccgggc #### Naaladl1_ID1453_12 --> 0 - 2 Original Alignment ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGA-TATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCag ggtttgctaatcactcatcaaggtgtcattgaattccttgttcaccaaagATCAGTGCACCAGGATCCAGTGGTCTCAGGATCTATGATAATTGGATACGACTATACTAACCGTGCAAGCCCAGTATATGGGCTGGTCCCGaggtaggttcagattaaggtccagtgaggctgtttctcatgtctgctgtcca Alignment from CESAR ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGA-TATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCag ggtttgctaatcactcatcaaggtgtcattgaattccttgttcaccaaagATCAGTGCACCAGGATCCAGTGGTCTCAGGATCTATGATAATTGGATACGACTATACTAACCGTGCAAGCCCAGTATATGGGCTGGTCCCGaggtaggttcagattaaggtccagtgaggctgtttctcatgtctgcctcttg Alignment from Spaln_aa2Genome ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGA-TATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG ggtttgctaatcactcatcaaggtgtcattgaattccttgttcaccaaagATCAGTGCACCAGGATCCAGTGGTCTCAGGATCTATGATAATTGGATACGAcTATACTAACCGTGCAAGCCCAGTATATGGGCTGGTCCCGAGgtaggttcagattaaggtccagtgaggctgtttctcatgtctgctgtcca Alignment from Spaln_nt2Genome ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGA-TATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG ggtttgctaatcactcatcaaggtgtcattgaattccttgttcaccaaagATCAGTGCACCAGGATCCAGTGGTCTCAGGATCTATGATAATTGGATACGACTATACTAACCGTGCAAGCCCAGTATATGGGCTGGTCCCGAGgtaggttcagattaaggtccagtgaggctgtttctcatgtctgctgtcca Alignment from Pairagon ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGA-TATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG ggtttgctaatcactcatcaaggtgtcattgaattccttgttcaccaaagATCAGTGCACCAGGATCCAGTGGTCTCAGGATCTATGATAATTGGATACGACTATACTAACCGTGCAAGCCCAGTATATGGGCTGGTCCCGAGgtaggttcagattaaggtccagtgaggctgtttctcatgtctgctgtcca Alignment from Exonerate_protein2genome ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATCCGA-TATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG ggtttgctaatcactcatcaaggtgtcattgaattccttgttcaccaaagATCAGTGCACCAGGATCCAGTGGTCTCAGGATCTATGATAATTGGATACGACTATACTAACCGTGCAAGCCCAGTATATGGGCTGGTCCCGAGgtaggttcagattaaggtccagtgaggctgtttctcatgtctgctgtcca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATCAGTGCACCAGGCTCCAGTGGCCTCAGTATCTATGACAACTGGATC-CGATATACCAACCGCACTAGTCCAGTATATGGACTGGTTCCCAG ggtttgctaatcactcatcaaggtgtcattgaattccttgttcaccaaagATCAGTGCACCAGGATCCAGTGGTCTCAGGATCTATGATAATTGGATACGACTATACTAACCGTGCAAGCCCAGTATATGGGCTGGTCCCGAGgtaggttcagattaaggtccagtgaggctgtttctcatgtctgctgtcca #### Naaladl1_ID1456_15 --> 2 - 1 Original Alignment gtTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTC-CTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGg gg gcataaaggtgggacttggatgttacctttactctggttctttattttaggtTTTAGCAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTGGGCACCCAGTTAGAAAAGCAGAATGTTAGCTTGggtcagtcacagcatcctgaggcagtgtaccccagccgtgtctctacaggg Alignment from CESAR gtTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTC-CTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGg gg gcataaaggtgggacttggatgttacctttactctggttctttattttaggtTTTAGCAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTGGGCACCCAGTTAGAAAAGCAGAATGTTAGCTTGggtcagtcacagcatcctgaggcagtgccccccccactcccaccaccaggg Alignment from Spaln_aa2Genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTC-CTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GG gcataaaggtgggacttggatgttacctttactctggttctttattttagGTTTTAGCAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCcCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTGGGCACCCAGTTAGAAAAGCAGAATGTTAGCTTGGgtcagtcacagcatcctgaggcagtgtaccccagccgtgtctctacagGG Alignment from Spaln_nt2Genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTC-CTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GG gcataaaggtgggacttggatgttacctttactctggttctttattttagGTTTTAGCAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTGGGCACCCAGTTAGAAAAGCAGAATGTTAGCTTGGgtcagtcacagcatcctgaggcagtgtaccccagccgtgtctctacagGG Alignment from Pairagon GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTT-CCTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GG gcataaaggtgggacttggatgttacctttactctggttctttattttagGTTTTAGCAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTGGGCACCCAGTTAGAAAAGCAGAATGTTAGCTTGGgtcagtcacagcatcctgaggcagtgtaccccagccgtgtctctacagGG Alignment from Exonerate_protein2genome GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTC-CTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTGG GG gcataaaggtgggacttggatgttacctttactctggttctttattttagGTTTTAGCAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTGGGCACCCAGTTAGAAAAGCAGAATGTTAGCTTGGgtcagtcacagcatcctgaggcagtgtaccccagccgtgtctctacagGG Alignment from Exonerate_coding2genome gcataaaggtgggacttggatgttacctttactctggttctttattttaggttttagcagccaacaagctgttgcccggactgctgggagtgtgcttctccagctcagtgatagcctcttccctgcccctaaatgttagtgactatagtgagaccttacaaggtttccttcaggcagctcaagaagccctgggcacccagttagaaaagcagaatgttagcttgggtcagtcacagcatcctgaggcagtgtaccccagccgtgtctctacaggg Alignment from GeneWise GTTTCAGCAGCCACCAAGCTGTGGCCCGGACTGCTGGGAGCGTGCTTCTCCGGCTCAGTGACAGCCTCTTC-CTGCCCCTCAATGTCAGTGACTATAGTGAGACACTACAGAGTTTCCTGCAGGCTGCTCAAGAGGCCCTTGGCACCCAGTTAGAGAAACAGAACATCAGCCTG------------------------------------------------GGG gcataaaggtgggacttggatgttacctttactctggttctttattttagGTTTTAGCAGCCAACAAGCTGTTGCCCGGACTGCTGGGAGTGTGCTTCTCCAGCTCAGTGATAGCCTCTTCCCTGCCCCTAAATGTTAGTGACTATAGTGAGACCTTACAAGGTTTCCTTCAGGCAGCTCAAGAAGCCCTGGGCACCCAGTTAGAAAAGCAGAATGTTAGCTTGGGTCAGTCACAGCATCCTGAGGCAGTGTACCCCAGCCGTGTCTCTACAGGG #### Naaladl1_ID1458_17 --> 1 - 2 Original Alignment tCCTCTGCAGGTACGAATGGTCAATGAC-CAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACag tacctgagctaggtgctggctgtcagtgcacattgccctgtccttggcagtCCTCTGCAGGTTCAAATGGTTAATGACCCAACTGATGCTCTTAGAGTGTGCATTTTTGAACCCAAGGGCTTTCCCAGAGGAGAGGCATTACaggtttgcctaagcttagacaattaagttgcttaggcccaggcttaggacta Alignment from CESAR tCCTCTGCAGGTACGAATGGTCAATGAC-CAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACag tacctgagctaggtgctggctgtcagtgcacattgccctgtccttggcagtCCTCTGCAGGTTCAAATGGTTAATGACCCAACTGATGCTCTTAGAGTGTGCATTTTTGAACCCAAGGGCTTTCCCAGAGGAGAGGCATTACaggtttgcctaagcttagacaattaagttgcttaggcccaggcttaggacta Alignment from Spaln_aa2Genome TCCTCTGCAGGTACGAATGGTCAATGAC-CAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG tacctgagctaggtgctggctgtcagtgcacattgccctgtccttggcagTCCTCTGCAGGTTCAAATGGTTAATGACcCAACTGATGCTCTTAGAGTGTGCATTTTTGAACCCAAGGGCTTTCCCAGAGGAGAGGCATTACAGgtttgcctaagcttagacaattaagttgcttaggcccaggcttaggacta Alignment from Spaln_nt2Genome TCCTCTGCAGGTACGAATGGTCAATGACC-AGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG tacctgagctaggtgctggctgtcagtgcacattgccctgtccttggcagTCCTCTGCAGGTTCAAATGGTTAATGACCCAACTGATGCTCTTAGAGTGTGCATTTTTGAACCCAAGGGCTTTCCCAGAGGAGAGGCATTACAGgtttgcctaagcttagacaattaagttgcttaggcccaggcttaggacta Alignment from Pairagon TCCTCTGCAGGTACGAATGGTCAATGA-CCAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG tacctgagctaggtgctggctgtcagtgcacattgccctgtccttggcagTCCTCTGCAGGTTCAAATGGTTAATGACCCAACTGATGCTCTTAGAGTGTGCATTTTTGAACCCAAGGGCTTTCCCAGAGGAGAGGCATTACAGgtttgcctaagcttagacaattaagttgcttaggcccaggcttaggacta Alignment from Exonerate_protein2genome TCCTCTGCAGGTACGAATGGTCAATGAC-CAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG tacctgagctaggtgctggctgtcagtgcacattgccctgtccttggcagTCCTCTGCAGGTTCAAATGGTTAATGACCCAACTGATGCTCTTAGAGTGTGCATTTTTGAACCCAAGGGCTTTCCCAGAGGAGAGGCATTACAGgtttgcctaagcttagacaattaagttgcttaggcccaggcttaggacta Alignment from Exonerate_coding2genome TCCTCTGCAGGTACGAATGGTCAATGAC-CAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG tacctgagctaggtgctggctgtcagtgcacattgccctgtccttggcagTCCTCTGCAGGTTCAAATGGTTAATGACCCAACTGATGCTCTTAGAGTGTGCATTTTTGAACCCAAGGGCTTTCCCAGAGGAGAGGCATTACAGgtttgcctaagcttagacaattaagttgcttaggcccaggcttaggacta Alignment from GeneWise TCCTCTGCAGGTACGAATGGTCAATGAC-CAGCTGATGCTCTTAGAACGGGCATTCCTGAACCCAAGGGCTTTCCCAGAGGAGAGGCACTACAG tacctgagctaggtgctggctgtcagtgcacattgccctgtccttggcagTCCTCTGCAGGTTCAAATGGTTAATGACCCAACTGATGCTCTTAGAGTGTGCATTTTTGAACCCAAGGGCTTTCCCAGAGGAGAGGCATTACAGgtttgcctaagcttagacaattaagttgcttaggcccaggcttaggacta #### Ndufs8_ID193_3 --> 2 - 1 Original Alignment agTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGAC-AATGCAGCTCGGATT---CTGATGTGGACAGAACTCATCCGAg ctgtcactaatctccttttgccattaacgcatctttgtgttttctcctagagTATGTAAACAAAAAAGAGCAAGAGTCTGAAGTAGACATGAAGTCTGCTACTGACCAATGCTGCACAGATTCTGATGATGTGGACAGAACTAATCCGGggtaggatccagcgcagggccataagtggagaattcaagcagcagtgtggt Alignment from CESAR agTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGAC-AATGCAGCTCGGATTCTGATG---TGGACAGAACTCATCCGAg ctgtcactaatctccttttgccattaacgcatctttgtgttttctcctagagTATGTAAACAAAAAAGAGCAAGAGTCTGAAGTAGACATGAAGTCTGCTACTGACCAATGCTGCACAGATTCTGATGATGTGGACAGAACTAATCCGGggtaggatccagcgcagggccataagtggagaattcaagcagcagtgtggt Alignment from Spaln_aa2Genome AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGAC-AATGCAGCTCGGATTCTG---ATGTGGACAGAACTCATCCGAG ctgtcactaatctccttttgccattaacgcatctttgtgttttctcctagAGTATGTAAACAAAAAAGAGCAAGAGTCTGAAGTAGACATGAAGTCTGCTACTGACcAATGCTGCACAGATTCTGATGATGTGGACAGAACTAATCCGGGgtaggatccagcgcagggccataagtggagaattcaagcagcagtgtggt Alignment from Spaln_nt2Genome AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGAC-AATGCAGCTCGGATTCTGATG---TGGACAGAACTCATCCGAG ctgtcactaatctccttttgccattaacgcatctttgtgttttctcctagAGTATGTAAACAAAAAAGAGCAAGAGTCTGAAGTAGACATGAAGTCTGCTACTGACCAATGCTGCACAGATTCTGATGATGTGGACAGAACTAATCCGGGgtaggatccagcgcagggccataagtggagaattcaagcagcagtgtggt Alignment from Pairagon AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGA-CAATGCAGCTCGGATTC---TGATGTGGACAGAACTCATCCGAG ctgtcactaatctccttttgccattaacgcatctttgtgttttctcctagAGTATGTAAACAAAAAAGAGCAAGAGTCTGAAGTAGACATGAAGTCTGCTACTGACCAATGCTGCACAGATTCTGATGATGTGGACAGAACTAATCCGGGgtaggatccagcgcagggccataagtggagaattcaagcagcagtgtggt Alignment from Exonerate_protein2genome AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGAC-AATGCAGCTCGGATTCTG---ATGTGGACAGAACTCATCCGAG ctgtcactaatctccttttgccattaacgcatctttgtgttttctcctagAGTATGTAAACAAAAAAGAGCAAGAGTCTGAAGTAGACATGAAGTCTGCTACTGACCAATGCTGCACAGATTCTGATGATGTGGACAGAACTAATCCGGGgtaggatccagcgcagggccataagtggagaattcaagcagcagtgtggt Alignment from Exonerate_coding2genome AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGAC-AATGCAGCTCGGATTCTG---ATGTGGACAGAACTCATCCGAG ctgtcactaatctccttttgccattaacgcatctttgtgttttctcctagAGTATGTAAACAAAAAAGAGCAAGAGTCTGAAGTAGACATGAAGTCTGCTACTGACCAATGCTGCACAGATTCTGATGATGTGGACAGAACTAATCCGGGgtaggatccagcgcagggccataagtggagaattcaagcagcagtgtggt Alignment from GeneWise AGTATGTGAATAAGAAGGAACAGGAGTCTGAGGTGGACATGAAGTCCGCAACTGAC-AATGCAGCTCGGATTCTGATG---TGGACAGAACTCATCCGAG ctgtcactaatctccttttgccattaacgcatctttgtgttttctcctagAGTATGTAAACAAAAAAGAGCAAGAGTCTGAAGTAGACATGAAGTCTGCTACTGACCAATGCTGCACAGATTCTGATGATGTGGACAGAACTAATCCGGGgtaggatccagcgcagggccataagtggagaattcaagcagcagtgtggt #### Ndufv1_ID273_9 --> 2 - 0 Original Alignment gcGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGT-GCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctcagagttgactgttttgcctactgcagggGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGTGATGCCTGTCCAGCTGAGATTGATTCCCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTCGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgttctgtgcatcttcctctaccatcctccattacgggaggggctgggctc Alignment from CESAR gcGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGT-GCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctcagagttgactgttttgcctactgcagggGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGTGATGCCTGTCCAGCTGAGATTGATTCCCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTCGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgttctgtgcatcttcctctaccatcctccattacgggaggggctgggctc Alignment from Spaln_aa2Genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGT-GCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctcagagttgactgttttgcctactgcagGGGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGTGATGCCTGTCCAGCTGAGATTGATTCCCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTcGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgttctgtgcatcttcctctaccatcctccattacgggaggggctgggctc Alignment from Spaln_nt2Genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGT-GCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctcagagttgactgttttgcctactgcagGGGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGTGATGCCTGTCCAGCTGAGATTGATTCCCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTCGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgttctgtgcatcttcctctaccatcctccattacgggaggggctgggctc Alignment from Pairagon GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGT-GCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctcagagttgactgttttgcctactgcagGGGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGTGATGCCTGTCCAGCTGAGATTGATTCCCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTCGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgttctgtgcatcttcctctaccatcctccattacgggaggggctgggctc Alignment from Exonerate_protein2genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGT-GCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctcagagttgactgttttgcctactgcagGGGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGTGATGCCTGTCCAGCTGAGATTGATTCCCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTCGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgttctgtgcatcttcctctaccatcctccattacgggaggggctgggctc Alignment from Exonerate_coding2genome GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGT-GCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctcagagttgactgttttgcctactgcagGGGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGTGATGCCTGTCCAGCTGAGATTGATTCCCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTCGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgttctgtgcatcttcctctaccatcctccattacgggaggggctgggctc Alignment from GeneWise GCGTTGACTGGATGAACAAGGTGATGGCCCGATTTGTGAAGGGAGATGCCCGGCCAGCTGAGATTGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCACACCATTTGT-GCTCTGGGTGATGGGGCTGCCTGGCCAGTACAG atgagtattgtagattcaaatctcagagttgactgttttgcctactgcagGGGTTGAGTGGATGAACACAGTGGTGGCCAGATTTGTGGAAGGTGATGCCTGTCCAGCTGAGATTGATTCCCTGTGGCAGATCAGTAAACAGATAGAAAGCCACACCATTTGTCGCCCTAGGTGGTGGGGCTGCCTGGCCAGTTCAGgttctgtgcatcttcctctaccatcctccattacgggaggggctgggctc #### Ndufv1_ID280_2 --> 0 - 2 Original Alignment ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAACCTGTATGGG-CGCCATGACTGGag g tgtgctgactgcccctctcactgtttaagcctctctctcccgctccacagACAGCACCCAAGAAAACCTCATTTGGCTCGGTGAAGGATGATGACTGTATTTTTACTAATCTCTGTGGGCCGCCATGACTGGaggtaattcaaagctatgacctaggcaaaggctgcccactctgcctggcaga Alignment from CESAR ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAACCTGTATGGG-CGCCATGACTGGag g tgtgctgactgcccctctcactgtttaagcctctctctcccgctccacagACAGCACCCAAGAAAACCTCATTTGGCTCGGTGAAGGATGATGACTGTATTTTTACTAATCTCTGTGGGCCGCCATGACTGGaggtaattcaaagctatgacctaggcaaagggtgggttttgtgccttttaga Alignment from Spaln_aa2Genome ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAACCTGTAT-GGGCGCCATGACTGGAG G tgtgctgactgcccctctcactgtttaagcctctctctcccgctccacagACAGCACCCAAGAAAACCTCATTTGGCTCGGTGAAGGATGATGACTGTATTTTTACTAATCTCTGTgGGCCGCCATGACTGGAGgtaattcaaagctatgacctaggcaaaggctgcccactctgcctggcagA Alignment from Spaln_nt2Genome ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAACCTGTATGGGC-GCCATGACTGGAG G tgtgctgactgcccctctcactgtttaagcctctctctcccgctccacagACAGCACCCAAGAAAACCTCATTTGGCTCGGTGAAGGATGATGACTGTATTTTTACTAATCTCTGTGGGCCGCCATGACTGGAGgtaattcaaagctatgacctaggcaaaggctgcccactctgcctggcagA Alignment from Pairagon ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAACCTGTATGGG-CGCCATGACTGGAGG------------------------------------------------- tgtgctgactgcccctctcactgtttaagcctctctctcccgctccacagACAGCACCCAAGAAAACCTCATTTGGCTCGGTGAAGGATGATGACTGTATTTTTACTAATCTCTGTGGGCCGCCATGACTGGAGGTAATTCAAAGCTATGACCTAGGCAAAGGCTGCCCACTCTGCCTGGCAGA Alignment from Exonerate_protein2genome ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAACCTG-TATGGGCGCCATGACTGGAG G tgtgctgactgcccctctcactgtttaagcctctctctcccgctccacagACAGCACCCAAGAAAACCTCATTTGGCTCGGTGAAGGATGATGACTGTATTTTTACTAATCTCTGTGGGCCGCCATGACTGGAGgtaattcaaagctatgacctaggcaaaggctgcccactctgcctggcagA Alignment from Exonerate_coding2genome ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAACCTG-TATGGGCGCCATGACTGGAG G tgtgctgactgcccctctcactgtttaagcctctctctcccgctccacagACAGCACCCAAGAAAACCTCATTTGGCTCGGTGAAGGATGATGACTGTATTTTTACTAATCTCTGTGGGCCGCCATGACTGGAGgtaattcaaagctatgacctaggcaaaggctgcccactctgcctggcagA Alignment from GeneWise ACAGCACCCAAGAAAACCTCATTTGGCTCACTGAAGGATGAAGACCGGATCTTTACCAACCTG-TATGGGCGCCATGACTGGAG G tgtgctgactgcccctctcactgtttaagcctctctctcccgctccacagACAGCACCCAAGAAAACCTCATTTGGCTCGGTGAAGGATGATGACTGTATTTTTACTAATCTCTGTGGGCCGCCATGACTGGAGgtaattcaaagctatgacctaggcaaaggctgcccactctgcctggcagA #### Nfkb2_ID9826_4 --> 0 - 0 Original Alignment CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGT-TTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctcctccttattactgctgatttcctgcctccttgcagCGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCTCCCATGGTGGCCTTGCCAGGTGCGTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTAAAGgtaggcgcagatgccacaggtgaccttgctctgtagtgcgcatgaacctt Alignment from CESAR CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGT-TTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctcctccttattactgctgatttcctgcctccttgcagCGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCTCCCATGGTGGCCTTGCCAGGTGCGTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTAAAGgtaggcgcagatgccacaggtgaccttgctctgtagtgcgcatgaatggt Alignment from Spaln_aa2Genome CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGT-TTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctcctccttattactgctgatttcctgcctccttgcagCGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCTCCCATGGTGGCcTTGCCAGGTGCGTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTAAAGgtaggcgcagatgccacaggtgaccttgctctgtagtgcgcatgaacctt Alignment from Spaln_nt2Genome CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGT-TTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctcctccttattactgctgatttcctgcctccttgcagCGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCTCCCATGGTGGCCTTGCCAGGTGCGTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTAAAGgtaggcgcagatgccacaggtgaccttgctctgtagtgcgcatgaacctt Alignment from Pairagon CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGT-TTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctcctccttattactgctgatttcctgcctccttgcagCGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCTCCCATGGTGGCCTTGCCAGGTGCGTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTAAAGgtaggcgcagatgccacaggtgaccttgctctgtagtgcgcatgaacctt Alignment from Exonerate_protein2genome CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGT-TTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctcctccttattactgctgatttcctgcctccttgcagCGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCTCCCATGGTGGCCTTGCCAGGTGCGTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTAAAGgtaggcgcagatgccacaggtgaccttgctctgtagtgcgcatgaacctt Alignment from Exonerate_coding2genome CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGT-TTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctcctccttattactgctgatttcctgcctccttgcagCGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCTCCCATGGTGGCCTTGCCAGGTGCGTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTAAAGgtaggcgcagatgccacaggtgaccttgctctgtagtgcgcatgaacctt Alignment from GeneWise CGAGGCTTCAGATTTCGATATGGCTGTGAAGGCCCCTCCCATGGAGGT-TTGCCAGGTGCCTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTCAAG ggtagtttgcttctcctccttattactgctgatttcctgcctccttgcagCGAGGCTATAGATTCCGATATGGCTGTGAGGGCCCCTCCCATGGTGGCCTTGCCAGGTGCGTCCAGTGAGAAGGGCCGGAAGACCTATCCTACTGTAAAGgtaggcgcagatgccacaggtgaccttgctctgtagtgcgcatgaacctt #### Nfkb2_ID9832_10 --> 0 - 1 Original Alignment TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTG-TTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTAC---CCTCTGGTGGAAg catacttgctggtgctaaatccaacacttcagggtcccaatgcttcgcagTATGCCATTGTGTTCCAGACTCCACCCTATCACAAGATGAAGGTTGAAAGACCCGTGACTGTGCTTCCTTCAGCTGAAGCGTAAACGTGGGGGTGATGTTTCAGACTCCAAACAATACACATATTATTACTCTTTGGTAGAGggtcagtcagggttcagtatttccaaaagctagttgaactcaagcctgtca Alignment from CESAR TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTG-TTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACA---TATTACCCTCTGGTGGAAg catacttgctggtgctaaatccaacacttcagggtcccaatgcttcgcagTATGCCATTGTGTTCCAGACTCCACCCTATCACAAGATGAAGGTTGAAAGACCCGTGACTGTGCTTCCTTCAGCTGAAGCGTAAACGTGGGGGTGATGTTTCAGACTCCAAACAATACACATATTATTACTCTTTGGTAGAGggtcagtcagggttcagtatttccaaaagctagttgaactcaagcctgtca Alignment from Spaln_aa2Genome TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTG-TTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACA---TATTACCCTCTGGTGGAAG catacttgctggtgctaaatccaacacttcagggtcccaatgcttcgcagTATGCCATTGTGTTCCAGACTCCACCCTATCACAAGATGAAGGTTGAAAGACCCGTGACTGTGcTTCCTTCAGCTGAAGCGTAAACGTGGGGGTGATGTTTCAGACTCCAAACAATACACATATTATTACTCTTTGGTAGAGGgtcagtcagggttcagtatttccaaaagctagttgaactcaagcctgtca Alignment from Spaln_nt2Genome TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTG-TTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACATATTA---CCCTCTGGTGGAAG catacttgctggtgctaaatccaacacttcagggtcccaatgcttcgcagTATGCCATTGTGTTCCAGACTCCACCCTATCACAAGATGAAGGTTGAAAGACCCGTGACTGTGCTTCCTTCAGCTGAAGCGTAAACGTGGGGGTGATGTTTCAGACTCCAAACAATACACATATTATTACTCTTTGGTAGAGGgtcagtcagggttcagtatttccaaaagctagttgaactcaagcctgtca Alignment from Pairagon TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTG-TTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACA---TATTACCCTCTGGTGGAAG catacttgctggtgctaaatccaacacttcagggtcccaatgcttcgcagTATGCCATTGTGTTCCAGACTCCACCCTATCACAAGATGAAGGTTGAAAGACCCGTGACTGTGCTTCCTTCAGCTGAAGCGTAAACGTGGGGGTGATGTTTCAGACTCCAAACAATACACATATTATTACTCTTTGGTAGAGGgtcagtcagggttcagtatttccaaaagctagttgaactcaagcctgtca Alignment from Exonerate_protein2genome TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTG-TTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACA---TATTACCCTCTGGTGGAAG catacttgctggtgctaaatccaacacttcagggtcccaatgcttcgcagTATGCCATTGTGTTCCAGACTCCACCCTATCACAAGATGAAGGTTGAAAGACCCGTGACTGTGCTTCCTTCAGCTGAAGCGTAAACGTGGGGGTGATGTTTCAGACTCCAAACAATACACATATTATTACTCTTTGGTAGAGGgtcagtcagggttcagtatttccaaaagctagttgaactcaagcctgtca Alignment from Exonerate_coding2genome TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACGGTG-TTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACA---TATTACCCTCTGGTGGAAG catacttgctggtgctaaatccaacacttcagggtcccaatgcttcgcagTATGCCATTGTGTTCCAGACTCCACCCTATCACAAGATGAAGGTTGAAAGACCCGTGACTGTGCTTCCTTCAGCTGAAGCGTAAACGTGGGGGTGATGTTTCAGACTCCAAACAATACACATATTATTACTCTTTGGTAGAGGgtcagtcagggttcagtatttccaaaagctagttgaactcaagcctgtca Alignment from GeneWise TATGCCATTGTGTTCCGGACACCGCCCTATCACAAGATGAAGATCGAGAGGCCTGTAACG-GTGTTCCTGCAGCTGAAACGCAAGCGTGGGGGCGATGTCTCGGACTCCAAACAGTTCACA---TATTACCCTCTGGTGGAAG catacttgctggtgctaaatccaacacttcagggtcccaatgcttcgcagTATGCCATTGTGTTCCAGACTCCACCCTATCACAAGATGAAGGTTGAAAGACCCGTGACTGTGCTTCCTTCAGCTGAAGCGTAAACGTGGGGGTGATGTTTCAGACTCCAAACAATACACATATTATTACTCTTTGGTAGAGGgtcagtcagggttcagtatttccaaaagctagttgaactcaagcctgtca #### Nfkb2_ID9833_11 --> 2 - 1 Original Alignment acAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGG-GGTTATGGAGGCGCTGGAGGAg gcacttgtctgtatttattaagttttgaggttttttttgttcttttgcagacAAGGAGGAA------AGTAAGAGGAGGAAGGCCTTGCCCACCTTCTCTCAGCCCTTTGGAGGTGGAACCCATATGGGTGGACGTTCTGGTGGGTCTGCTGGGCGGTTATGGAGATGCTGGGGGAggtaaggaagcacaaatgacaggggaaaggaaggagaatggaagctatatg Alignment from CESAR acAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGG-GGTTATGGAGGCGCTGGAGGAg gcacttgtctgtatttattaagttttgaggttttttttgttcttttgcagacAAGGAGGAA------AGTAAGAGGAGGAAGGCCTTGCCCACCTTCTCTCAGCCCTTTGGAGGTGGAACCCATATGGGTGGACGTTCTGGTGGGTCTGCTGGGCGGTTATGGAGATGCTGGGGGAggtaaggaagcacaaatgacaggggaaaggaaggagaatggaagctatatg Alignment from Spaln_aa2Genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGG-GGTTATGGAGGCGCTGGAGGAG gcacttgtctgtatttattaagttttgaggttttttttgttcttttgcagACAAGGAGGAA------AGTAAGAGGAGGAAGGCCTTGCCCACCTTCTCTCAGCCCTTTGGAGGTGGAACCCATATGGGTGGACGTTCTGGTGGGTCTGCTGGGcGGTTATGGAGATGCTGGGGGAGgtaaggaagcacaaatgacaggggaaaggaaggagaatggaagctatatg Alignment from Spaln_nt2Genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGG-GGTTATGGAGGCGCTGGAGGAG gcacttgtctgtatttattaagttttgaggttttttttgttcttttgcagACAAGGAGGAA------AGTAAGAGGAGGAAGGCCTTGCCCACCTTCTCTCAGCCCTTTGGAGGTGGAACCCATATGGGTGGACGTTCTGGTGGGTCTGCTGGGCGGTTATGGAGATGCTGGGGGAGgtaaggaagcacaaatgacaggggaaaggaaggagaatggaagctatatg Alignment from Pairagon ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCTGGG-GGTTATGGAGGCGCTGGAGGAG gcacttgtctgtatttattaagttttgaggttttttttgttcttttgcagACAAGGAGGAA------AGTAAGAGGAGGAAGGCCTTGCCCACCTTCTCTCAGCCCTTTGGAGGTGGAACCCATATGGGTGGACGTTCTGGTGGGTCTGCTGGGCGGTTATGGAGATGCTGGGGGAGgtaaggaagcacaaatgacaggggaaaggaaggagaatggaagctatatg Alignment from Exonerate_protein2genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCT-GGGGGTTATGGAGGCGCTGGAGGAG gcacttgtctgtatttattaagttttgaggttttttttgttcttttgcagACAAGGAGGAA------AGTAAGAGGAGGAAGGCCTTGCCCACCTTCTCTCAGCCCTTTGGAGGTGGAACCCATATGGGTGGACGTTCTGGTGGGTCTGCTGGGCGGTTATGGAGATGCTGGGGGAGgtaaggaagcacaaatgacaggggaaaggaaggagaatggaagctatatg Alignment from Exonerate_coding2genome ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCCGCT-GGGGGTTATGGAGGCGCTGGAGGAG gcacttgtctgtatttattaagttttgaggttttttttgttcttttgcagACAAGGAGGAA------AGTAAGAGGAGGAAGGCCTTGCCCACCTTCTCTCAGCCCTTTGGAGGTGGAACCCATATGGGTGGACGTTCTGGTGGGTCTGCTGGGCGGTTATGGAGATGCTGGGGGAGgtaaggaagcacaaatgacaggggaaaggaaggagaatggaagctatatg Alignment from GeneWise ACAAGGAGGAAGTGCAGAGGAAGCGGAGAAAGGCCTTGCCCACCTTCTCCCAGCCCTTCGGGGGCGGATCCCACATGGGTGGAGGTTCTGGGGGCTCC-GCTGGGGGTTATGGAGGCGCTGGAGGAG gcacttgtctgtatttattaagttttgaggttttttttgttcttttgcagACAAGGAGGAA------AGTAAGAGGAGGAAGGCCTTGCCCACCTTCTCTCAGCCCTTTGGAGGTGGAACCCATATGGGTGGACGTTCTGGTGGGTCTGCTGGGCGGTTATGGAGATGCTGGGGGAGgtaaggaagcacaaatgacaggggaaaggaaggagaatggaagctatatg #### Nfkb2_ID9835_13 --> 2 - 2 Original Alignment ctCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACC-GCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACac gcaaggcagggtgttaacatgaagcaaaaagatgtttgtctttgttgcagccCGTGAATACAATGCATGCCTGTTTGGCCTGGCACAGCGTAGTGCCCGAGTCCTGCTGGACTATGGTGTCACTCTCAGATGCACGTGCTCTGTTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACacgtaacactgagtttgggctaccatgtgatccccagggtgtttaggttata Alignment from CESAR ctCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACC-GCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACac gcaaggcagggtgttaacatgaagcaaaaagatgtttgtctttgttgcagccCGTGAATACAATGCATGCCTGTTTGGCCTGGCACAGCGTAGTGCCCGAGTCCTGCTGGACTATGGTGTCACTCTCAGATGCACGTGCTCTGTTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACacgtaacactgagtttgggctaccatgtgatccccagggtgtttaggttata Alignment from Spaln_aa2Genome CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACC-GCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC gcaaggcagggtgttaacatgaagcaaaaagatgtttgtctttgttgcagCCCGTGAATACAATGCATGCCTGTTTGGCCTGGCACAGCGTAGTGCCCGAGTCCTGCTGGACTATGGTGTCACTcTCAGATGCACGTGCTCTGTTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtaacactgagtttgggctaccatgtgatccccagggtgtttaggttata Alignment from Spaln_nt2Genome CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCAC-CGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC gcaaggcagggtgttaacatgaagcaaaaagatgtttgtctttgttgcagCCCGTGAATACAATGCATGCCTGTTTGGCCTGGCACAGCGTAGTGCCCGAGTCCTGCTGGACTATGGTGTCACTCTCAGATGCACGTGCTCTGTTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtaacactgagtttgggctaccatgtgatccccagggtgtttaggttata Alignment from Pairagon CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCAC-CGCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC gcaaggcagggtgttaacatgaagcaaaaagatgtttgtctttgttgcagCCCGTGAATACAATGCATGCCTGTTTGGCCTGGCACAGCGTAGTGCCCGAGTCCTGCTGGACTATGGTGTCACTCTCAGATGCACGTGCTCTGTTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtaacactgagtttgggctaccatgtgatccccagggtgtttaggttata Alignment from Exonerate_protein2genome CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACC-GCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC gcaaggcagggtgttaacatgaagcaaaaagatgtttgtctttgttgcagCCCGTGAATACAATGCATGCCTGTTTGGCCTGGCACAGCGTAGTGCCCGAGTCCTGCTGGACTATGGTGTCACTCTCAGATGCACGTGCTCTGTTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtaacactgagtttgggctaccatgtgatccccagggtgtttaggttata Alignment from Exonerate_coding2genome CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACC-GCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC gcaaggcagggtgttaacatgaagcaaaaagatgtttgtctttgttgcagCCCGTGAATACAATGCATGCCTGTTTGGCCTGGCACAGCGTAGTGCCCGAGTCCTGCTGGACTATGGTGTCACTCTCAGATGCACGTGCTCTGTTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtaacactgagtttgggctaccatgtgatccccagggtgtttaggttata Alignment from GeneWise CTCGCGAGTACAACGCGCGCCTGTTCGGTCTGGCGCAGCGCAGCGCCCGAGCGTTGCTGGACTACGGCGTCACC-GCAGACGCGCGTGCTCTGCTAGCGGGACAGCGCCACCTGCTGATGGCACAGGACGAGAACGGAGACAC gcaaggcagggtgttaacatgaagcaaaaagatgtttgtctttgttgcagCCCGTGAATACAATGCATGCCTGTTTGGCCTGGCACAGCGTAGTGCCCGAGTCCTGCTGGACTATGGTGTCACTCTCAGATGCACGTGCTCTGTTAGCGGGACAGCGTCACCTGCTGATGGCACAGGACGAGAATGGAGACACgtaacactgagtttgggctaccatgtgatccccagggtgtttaggttata #### Nfkb2_ID9842_20 --> 2 - 0 Original Alignment ggCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTG-CTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG acatgctcctgcatgtacattagactacgctaaatttaattgttttacagggCCAGGCCTGTCCCTAGGGGATACAGCCCTCCAAAACTTGCAGCAACTGCTTAGACGGTCCTGAAGCGCAAGGTAGCTGGGCAAAGCTAGCAGAGCGTCTGGGATTGAGAAGCCTGGTGGACACATACAGGAAAACTCCATCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtatgacagttagacactatgctgaggcctcaatcatactgtatttttgt Alignment from CESAR ggCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTG-GATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG acatgctcctgcatgtacattagactacgctaaatttaattgttttacagggCCAGGCCTGTCCCTAGGGGATACAGCCCTCCAAAACTTGCAGCAACTGCTTAGACGGTCCTGAAGCGCAAGGTAGCTGGGCAAAGCTAGCAGAGCGTCTGGGATTGAGAAGCCTGGTGGACACATACAGGAAAACTCCATCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtatgacagttagacactatgctgaggcctcaatcacctcctttctctgc Alignment from Spaln_aa2Genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTG-CTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG acatgctcctgcatgtacattagactacgctaaatttaattgttttacagGGCCAGGCCTGTCCCTAGGGGATACAGCCCTCCAAAACTTGCAGCAACTGcTTAGACGGTCCTGAAGCGCAAGGTAGCTGGGCAAAGCTAGCAGAGCGTCTGGGATTGAGAAGCCTGGTGGACACATACAGGAAAACTCCATCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtatgacagttagacactatgctgaggcctcaatcatactgtatttttgt Alignment from Spaln_nt2Genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGCTG-GATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG acatgctcctgcatgtacattagactacgctaaatttaattgttttacagGGCCAGGCCTGTCCCTAGGGGATACAGCCCTCCAAAACTTGCAGCAACTGCTTAGACGGTCCTGAAGCGCAAGGTAGCTGGGCAAAGCTAGCAGAGCGTCTGGGATTGAGAAGCCTGGTGGACACATACAGGAAAACTCCATCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtatgacagttagacactatgctgaggcctcaatcatactgtatttttgt Alignment from Pairagon GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTGC-TGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG acatgctcctgcatgtacattagactacgctaaatttaattgttttacagGGCCAGGCCTGTCCCTAGGGGATACAGCCCTCCAAAACTTGCAGCAACTGCTTAGACGGTCCTGAAGCGCAAGGTAGCTGGGCAAAGCTAGCAGAGCGTCTGGGATTGAGAAGCCTGGTGGACACATACAGGAAAACTCCATCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtatgacagttagacactatgctgaggcctcaatcatactgtatttttgt Alignment from Exonerate_protein2genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTG-CTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG acatgctcctgcatgtacattagactacgctaaatttaattgttttacagGGCCAGGCCTGTCCCTAGGGGATACAGCCCTCCAAAACTTGCAGCAACTGCTTAGACGGTCCTGAAGCGCAAGGTAGCTGGGCAAAGCTAGCAGAGCGTCTGGGATTGAGAAGCCTGGTGGACACATACAGGAAAACTCCATCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtatgacagttagacactatgctgaggcctcaatcatactgtatttttgt Alignment from Exonerate_coding2genome GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTG-CTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG acatgctcctgcatgtacattagactacgctaaatttaattgttttacagGGCCAGGCCTGTCCCTAGGGGATACAGCCCTCCAAAACTTGCAGCAACTGCTTAGACGGTCCTGAAGCGCAAGGTAGCTGGGCAAAGCTAGCAGAGCGTCTGGGATTGAGAAGCCTGGTGGACACATACAGGAAAACTCCATCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtatgacagttagacactatgctgaggcctcaatcatactgtatttttgt Alignment from GeneWise GGCCAGGGCTGTCCCTGGGGGATGCAGCCCTGCAGAACCTGGAGCAACTG-CTGGATGGTCCCGAAGCCCAGGGCAGCTGGGCAGAGCTGGCAGAGCGACTGGGGTTGAGAAGCCTGGTGGACACATACAGGAAGACCCCGTCTCCCAGCGGCAGTCTCCTTCGTAGTTACAAG acatgctcctgcatgtacattagactacgctaaatttaattgttttacagGGCCAGGCCTGTCCCTAGGGGATACAGCCCTCCAAAACTTGCAGCAACTGCTTAGACGGTCCTGAAGCGCAAGGTAGCTGGGCAAAGCTAGCAGAGCGTCTGGGATTGAGAAGCCTGGTGGACACATACAGGAAAACTCCATCTCCCAGTGGTAGTCTCCTGCGTAGCTACAAGgtatgacagttagacactatgctgaggcctcaatcatactgtatttttgt #### Noc3l_ID7660_15 --> 0 - 1 Original Alignment GAGCTAAGTTATCAAGAAAGTCTCCACTGT-GTTCAAACTGCTTTTCATATTCTTTCTGGACAAg gggatagaaagcatgcagttttgttcctgacacaatgcgtttttttccagGAACTTAGTTATCAAGAAAGTCTCCACTGTCGTTCAAACTGCTTTTCATATTCTTTCTGGACCAggtgagtagtccatttggtctccctttcatttcactaaatttgaaataatt Alignment from CESAR GAGCTAAGTTATCAAGAAAGTCTCCACTGT-GTTCAAACTGCTTTTCATATTCTTTCTGGACAAg gggatagaaagcatgcagttttgttcctgacacaatgcgtttttttccagGAACTTAGTTATCAAGAAAGTCTCCACTGTCGTTCAAACTGCTTTTCATATTCTTTCTGGACCAggtgagtagtccatttggtctccctttcatttcactaaatttcacccctct Alignment from Spaln_aa2Genome GAGCTAAGTTATCAAGAAAGTCTCCACTGT-GTTCAAACTGCTTTTCATATTCTTTCTGGACAAG gggatagaaagcatgcagttttgttcctgacacaatgcgtttttttccagGAACTTAGTTATCAAGAAAGTCTCCACTGTcGTTCAAACTGCTTTTCATATTCTTTCTGGACCAGgtgagtagtccatttggtctccctttcatttcactaaatttgaaataatt Alignment from Spaln_nt2Genome GAGCTAAGTTATCAAGAAAGTCTCCACTGT-GTTCAAACTGCTTTTCATATTCTTTCTGGACAAG gggatagaaagcatgcagttttgttcctgacacaatgcgtttttttccagGAACTTAGTTATCAAGAAAGTCTCCACTGTCGTTCAAACTGCTTTTCATATTCTTTCTGGACCAGgtgagtagtccatttggtctccctttcatttcactaaatttgaaataatt Alignment from Pairagon GAGCTAAGTTATCAAGAAAGTCTCCACTGT-GTTCAAACTGCTTTTCATATTCTTTCTGGACAAG gggatagaaagcatgcagttttgttcctgacacaatgcgtttttttccagGAACTTAGTTATCAAGAAAGTCTCCACTGTCGTTCAAACTGCTTTTCATATTCTTTCTGGACCAGgtgagtagtccatttggtctccctttcatttcactaaatttgaaataatt Alignment from Exonerate_protein2genome GAGCTAAGTTATCAAGAAAGTCTCCACTGT-GTTCAAACTGCTTTTCATATTCTTTCTGGACAAG gggatagaaagcatgcagttttgttcctgacacaatgcgtttttttccagGAACTTAGTTATCAAGAAAGTCTCCACTGTCGTTCAAACTGCTTTTCATATTCTTTCTGGACCAGgtgagtagtccatttggtctccctttcatttcactaaatttgaaataatt Alignment from Exonerate_coding2genome GAGCTAAGTTATCAAGAAAGTCTCCACTGT-GTTCAAACTGCTTTTCATATTCTTTCTGGACAAG gggatagaaagcatgcagttttgttcctgacacaatgcgtttttttccagGAACTTAGTTATCAAGAAAGTCTCCACTGTCGTTCAAACTGCTTTTCATATTCTTTCTGGACCAGgtgagtagtccatttggtctccctttcatttcactaaatttgaaataatt Alignment from GeneWise GAGCTAAGTTATCAAGAAAGTCTCCACTGT-GTTCAAACTGCTTTTCATATTCTTTCTGGACAAG gggatagaaagcatgcagttttgttcctgacacaatgcgtttttttccagGAACTTAGTTATCAAGAAAGTCTCCACTGTCGTTCAAACTGCTTTTCATATTCTTTCTGGACCAGgtgagtagtccatttggtctccctttcatttcactaaatttgaaataatt #### Noc3l_ID7673_2 --> 0 - 1 Original Alignment AGAAGAAATAAAAAGCAGGTC-CCAAGCTTTCGCAAGTTGATAAAAACTAGTAAAGTGAAACTTGAAAACAAATTGAAAAATAAGCAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAAGAGCAGAGGAAACTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCCATTCCGCTGGAGGACCCAAAGAGCAAACGGCCAg ggattttaagtagtcttatctcttttatgtgtctctctctgtctcggtagAGAAGAAATAAAAAGCAGGTCCCCAAGCTTTCGCAAGCTAATAAAAACCAGTAAAGTGAAACTTGAAAACAAATTAAAAAACAAACAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAAGAGCAAAGGAAATTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCAATTCCACTGGAAGACCCCAAGAGCAAACGGCCAggtgaggaatgttttcacttggggtccccaggtaaggctccccaagtatgt Alignment from CESAR AGAAGAAATAAAAAGCAGGTC-CCAAGCTTTCGCAAGTTGATAAAAACTAGTAAAGTGAAACTTGAAAACAAATTGAAAAATAAGCAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAAGAGCAGAGGAAACTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCCATTCCGCTGGAGGACCCAAAGAGCAAACGGCCAg ggattttaagtagtcttatctcttttatgtgtctctctctgtctcggtagAGAAGAAATAAAAAGCAGGTCCCCAAGCTTTCGCAAGCTAATAAAAACCAGTAAAGTGAAACTTGAAAACAAATTAAAAAACAAACAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAAGAGCAAAGGAAATTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCAATTCCACTGGAAGACCCCAAGAGCAAACGGCCAggtgaggaatgttttcacttggggtccccaggtaaggctccccaagtatgt Alignment from Spaln_aa2Genome AGAAGAAATAAAAAGCAGGTCCCA-AGCTTTCGCAAGTTGATAAAAACTAGTAAAGTGAAACTTGAAAACAAATTGAAAAATAAGCAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAAGAGCAGAGGAAACTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCCATTCCGCTGGAGGACCCAAAGAGCAAACGGCCAG ggattttaagtagtcttatctcttttatgtgtctctctctgtctcggtagAGAAGAAATAAAAAGCAGGTCCCCaAGCTTTCGCAAGCTAATAAAAACCAGTAAAGTGAAACTTGAAAACAAATTAAAAAACAAACAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAAGAGCAAAGGAAATTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCAATTCCACTGGAAGACCCCAAGAGCAAACGGCCAGgtgaggaatgttttcacttggggtccccaggtaaggctccccaagtatgt Alignment from Spaln_nt2Genome AGAAGAAATAAAAAGCAGGT-CCCAAGCTTTCGCAAGTTGATAAAAACTAGTAAAGTGAAACTTGAAAACAAATTGAAAAATAAGCAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAAGAGCAGAGGAAACTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCCATTCCGCTGGAGGACCCAAAGAGCAAACGGCCAG ggattttaagtagtcttatctcttttatgtgtctctctctgtctcggtagAGAAGAAATAAAAAGCAGGTCCCCAAGCTTTCGCAAGCTAATAAAAACCAGTAAAGTGAAACTTGAAAACAAATTAAAAAACAAACAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAAGAGCAAAGGAAATTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCAATTCCACTGGAAGACCCCAAGAGCAAACGGCCAGgtgaggaatgttttcacttggggtccccaggtaaggctccccaagtatgt Alignment from Pairagon GAGAAGAAATAAAAAGCAGGTC-CCAAGCTTTCGCAAGTTGATAAAAACTAGTAAAGTGAAACTTGAAAACAAATTGAAAAATAAGCAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAAGAGCAGAGGAAACTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCCATTCCGCTGGAGGACCCAAAGAGCAAACGGCCAG ggattttaagtagtcttatctcttttatgtgtctctctctgtctcggtaGAGAAGAAATAAAAAGCAGGTCCCCAAGCTTTCGCAAGCTAATAAAAACCAGTAAAGTGAAACTTGAAAACAAATTAAAAAACAAACAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAAGAGCAAAGGAAATTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCAATTCCACTGGAAGACCCCAAGAGCAAACGGCCAGgtgaggaatgttttcacttggggtccccaggtaaggctccccaagtatgt Alignment from Exonerate_protein2genome AGAAGAAATAAAAAGCAGGTC-CCAAGCTTTCGCAAGTTGATAAAAACTAGTAAAGTGAAACTTGAAAACAAATTGAAAAATAAGCAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAAGAGCAGAGGAAACTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCCATTCCGCTGGAGGACCCAAAGAGCAAACGGCCAG ggattttaagtagtcttatctcttttatgtgtctctctctgtctcggtagAGAAGAAATAAAAAGCAGGTCCCCAAGCTTTCGCAAGCTAATAAAAACCAGTAAAGTGAAACTTGAAAACAAATTAAAAAACAAACAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAAGAGCAAAGGAAATTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCAATTCCACTGGAAGACCCCAAGAGCAAACGGCCAGgtgaggaatgttttcacttggggtccccaggtaaggctccccaagtatgt Alignment from Exonerate_coding2genome AGAAGAAATAAAAAGCAGGTC-CCAAGCTTTCGCAAGTTGATAAAAACTAGTAAAGTGAAACTTGAAAACAAATTGAAAAATAAGCAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAAGAGCAGAGGAAACTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCCATTCCGCTGGAGGACCCAAAGAGCAAACGGCCAG ggattttaagtagtcttatctcttttatgtgtctctctctgtctcggtagAGAAGAAATAAAAAGCAGGTCCCCAAGCTTTCGCAAGCTAATAAAAACCAGTAAAGTGAAACTTGAAAACAAATTAAAAAACAAACAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAAGAGCAAAGGAAATTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCAATTCCACTGGAAGACCCCAAGAGCAAACGGCCAGgtgaggaatgttttcacttggggtccccaggtaaggctccccaagtatgt Alignment from GeneWise AAGGCGAGAAGAAATAAAAAGCAGGTCCCAAGCTTTCGCAAGTTGATAAAAACTAGTAAAGTGAAACTTGAAAACAAATTGAAAAATAAGCAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAAGAGCAGAGGAAACTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCCATTCCGCTGGAGGACCCAAAGAGCAAACGGCCAG ttttaagtagtcttatctcttttatgtgtctctctctgtctcggt---AGAGAAGAAATAAAAAGCAGGTCCCCAAGCTTTCGCAAGCTAATAAAAACCAGTAAAGTGAAACTTGAAAACAAATTAAAAAACAAACAATTTAAACAACAAAGTACCATCAAGAAGTACCGAAAAGAGCAAAGGAAATTAAGGCAAGCTGTAAAAGATGCTGTGTCTAAAAAACCAATTCCACTGGAAGACCCCAAGAGCAAACGGCCAGgtgaggaatgttttcacttggggtccccaggtaaggctccccaagtatgt #### Npas4_ID775_6 --> 2 - 2 Original Alignment tgGCTGAAAGTGGAGATATTCAG-GCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCag gtggatggcctggtagcacttgaggtgtcccagcttccttcctgtctcagttGCTGAAAGTGGAGATATCCAGCGCTGAGATGTTGGTGAGGCTTCAGGCCAAGCATGGAGGGTGGACATGGATTTATTGCATGTTATGCTCAGAGGGGCCAGAAGGACCTTTTACTGCCAATAATTACCCTAATaggtgagatgggagccaccagatgatgacaacagctgtgtttggtttaagaa Alignment from CESAR tgGCTGAAAGTGGAGATATTCAG-GCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCag gtggatggcctggtagcacttgaggtgtcccagcttccttcctgtctcagttGCTGAAAGTGGAGATATCCAGCGCTGAGATGTTGGTGAGGCTTCAGGCCAAGCATGGAGGGTGGACATGGATTTATTGCATGTTATGCTCAGAGGGGCCAGAAGGACCTTTTACTGCCAATAATTACCCTAATaggtgagatgggagccaccagatgatgacaacagctgtgtttggtttaagaa Alignment from Spaln_aa2Genome TGGCTGAAAGTGGAGATATTCAG-GCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtggatggcctggtagcacttgaggtgtcccagcttccttcctgtctcagTTGCTGAAAGTGGAGATATCCAGcGCTGAGATGTTGGTGAGGCTTCAGGCCAAGCATGGAGGGTGGACATGGATTTATTGCATGTTATGCTCAGAGGGGCCAGAAGGACCTTTTACTGCCAATAATTACCCTAATAGgtgagatgggagccaccagatgatgacaacagctgtgtttggtttaagaa Alignment from Spaln_nt2Genome TGGCTGAAAGTGGAGATATTCAG-GCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtggatggcctggtagcacttgaggtgtcccagcttccttcctgtctcagTTGCTGAAAGTGGAGATATCCAGCGCTGAGATGTTGGTGAGGCTTCAGGCCAAGCATGGAGGGTGGACATGGATTTATTGCATGTTATGCTCAGAGGGGCCAGAAGGACCTTTTACTGCCAATAATTACCCTAATAGgtgagatgggagccaccagatgatgacaacagctgtgtttggtttaagaa Alignment from Pairagon TGGCTGAAAGTGGAGATATTCAG-GCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtggatggcctggtagcacttgaggtgtcccagcttccttcctgtctcagTTGCTGAAAGTGGAGATATCCAGCGCTGAGATGTTGGTGAGGCTTCAGGCCAAGCATGGAGGGTGGACATGGATTTATTGCATGTTATGCTCAGAGGGGCCAGAAGGACCTTTTACTGCCAATAATTACCCTAATAGgtgagatgggagccaccagatgatgacaacagctgtgtttggtttaagaa Alignment from Exonerate_protein2genome TGGCTGAAAGTGGAGATATTCAG-GCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtggatggcctggtagcacttgaggtgtcccagcttccttcctgtctcagTTGCTGAAAGTGGAGATATCCAGCGCTGAGATGTTGGTGAGGCTTCAGGCCAAGCATGGAGGGTGGACATGGATTTATTGCATGTTATGCTCAGAGGGGCCAGAAGGACCTTTTACTGCCAATAATTACCCTAATAGgtgagatgggagccaccagatgatgacaacagctgtgtttggtttaagaa Alignment from Exonerate_coding2genome TGGCTGAAAGTGGAGATATTCAG-GCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtggatggcctggtagcacttgaggtgtcccagcttccttcctgtctcagTTGCTGAAAGTGGAGATATCCAGCGCTGAGATGTTGGTGAGGCTTCAGGCCAAGCATGGAGGGTGGACATGGATTTATTGCATGTTATGCTCAGAGGGGCCAGAAGGACCTTTTACTGCCAATAATTACCCTAATAGgtgagatgggagccaccagatgatgacaacagctgtgtttggtttaagaa Alignment from GeneWise TGGCTGAAAGTGGAGATATTCAG-GCTGAAATGGTGGTGAGACTTCAAGCCAAGCATGGAGGCTGGACATGGATTTACTGCATGCTATACTCAGAAGGTCCAGAAGGCCCTTTTACTGCCAATAACTACCCTATCAG gtggatggcctggtagcacttgaggtgtcccagcttccttcctgtctcagTTGCTGAAAGTGGAGATATCCAGCGCTGAGATGTTGGTGAGGCTTCAGGCCAAGCATGGAGGGTGGACATGGATTTATTGCATGTTATGCTCAGAGGGGCCAGAAGGACCTTTTACTGCCAATAATTACCCTAATAGgtgagatgggagccaccagatgatgacaacagctgtgtttggtttaagaa #### Npas4_ID776_5 --> 1 - 1 Original Alignment tGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTG-CTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGt gagtggatgaggctatatggaggttgaatggctttgggttttgccaacagtGTCCTAATCTACCTTGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTACCTACACCCTGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGcgtaagccttagtttctagtaggtcgtagcagtattctcatgaatctcata Alignment from CESAR tGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTG-CTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGt gagtggatgaggctatatggaggttgaatggctttgggttttgccaacagtGTCCTAATCTACCTTGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTACCTACACCCTGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGcgtaagccttagtttctagtaggtcgtagcagtattctcatgaatctcata Alignment from Spaln_aa2Genome TGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTG-CTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGT gagtggatgaggctatatggaggttgaatggctttgggttttgccaacagTGTCCTAATCTACCTTGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTAcCTACACCCTGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGCgtaagccttagtttctagtaggtcgtagcagtattctcatgaatctcata Alignment from Spaln_nt2Genome TGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTGC-TACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGT gagtggatgaggctatatggaggttgaatggctttgggttttgccaacagTGTCCTAATCTACCTTGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTACCTACACCCTGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGCgtaagccttagtttctagtaggtcgtagcagtattctcatgaatctcata Alignment from Pairagon TGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTG-CTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGT gagtggatgaggctatatggaggttgaatggctttgggttttgccaacagTGTCCTAATCTACCTTGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTACCTACACCCTGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGCgtaagccttagtttctagtaggtcgtagcagtattctcatgaatctcata Alignment from Exonerate_protein2genome TGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTG-CTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGT gagtggatgaggctatatggaggttgaatggctttgggttttgccaacagTGTCCTAATCTACCTTGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTACCTACACCCTGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGCgtaagccttagtttctagtaggtcgtagcagtattctcatgaatctcata Alignment from Exonerate_coding2genome TGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTG-CTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGT gagtggatgaggctatatggaggttgaatggctttgggttttgccaacagTGTCCTAATCTACCTTGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTACCTACACCCTGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGCgtaagccttagtttctagtaggtcgtagcagtattctcatgaatctcata Alignment from GeneWise TGTCCTAATCTACCTGGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTG-CTACACCCCGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGT gagtggatgaggctatatggaggttgaatggctttgggttttgccaacagTGTCCTAATCTACCTTGGCTTTGAGCGCAGCGAACTGCTCTGTAAATCATGGTATGGACTACCTACACCCTGAGGACCTGGCCCAAGCTTCTTCTCAACACTACCGCCTGCgtaagccttagtttctagtaggtcgtagcagtattctcatgaatctcata #### Npm3_ID9577_3 --> 0 - 0 Original Alignment CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTT-GTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tttctgcagccaatcatccctgaaggcacgctctgaccctgcgcccacagCTCTGCCTTACTGAGGCAGCCACAGATGAGTGTAATGTGATAGAAGTTCGTGGCCCGGGACTATGATAACCAGGAAATTGCAGTTTCTGTTGCAAACCTCAGGCTGTCTTGTCAACCGATGgtgtgtttgaaccattcatttctgttgggccctaacaggattaataactt Alignment from CESAR CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTT-GTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tttctgcagccaatcatccctgaaggcacgctctgaccctgcgcccacagCTCTGCCTTACTGAGGCAGCCACAGATGAGTGTAATGTGATAGAAGTTCGTGGCCCGGGACTATGATAACCAGGAAATTGCAGTTTCTGTTGCAAACCTCAGGCTGTCTTGTCAACCGATGgtgtgtttgaaccattcatttctgttgggccctaacaggattaataactt Alignment from Spaln_aa2Genome CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTT-GTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tttctgcagccaatcatccctgaaggcacgctctgaccctgcgcccacagCTCTGCCTTACTGAGGCAGCCACAGATGAGTGTAATGTGATAGAAGTTcGTGGCCCGGGACTATGATAACCAGGAAATTGCAGTTTCTGTTGCAAACCTCAGGCTGTCTTGTCAACCGATGgtgtgtttgaaccattcatttctgttgggccctaacaggattaataactt Alignment from Spaln_nt2Genome CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTT-GTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tttctgcagccaatcatccctgaaggcacgctctgaccctgcgcccacagCTCTGCCTTACTGAGGCAGCCACAGATGAGTGTAATGTGATAGAAGTTCGTGGCCCGGGACTATGATAACCAGGAAATTGCAGTTTCTGTTGCAAACCTCAGGCTGTCTTGTCAACCGATGgtgtgtttgaaccattcatttctgttgggccctaacaggattaataactt Alignment from Pairagon CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTT-GTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tttctgcagccaatcatccctgaaggcacgctctgaccctgcgcccacagCTCTGCCTTACTGAGGCAGCCACAGATGAGTGTAATGTGATAGAAGTTCGTGGCCCGGGACTATGATAACCAGGAAATTGCAGTTTCTGTTGCAAACCTCAGGCTGTCTTGTCAACCGATGgtgtgtttgaaccattcatttctgttgggccctaacaggattaataactt Alignment from Exonerate_protein2genome CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTT-GTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tttctgcagccaatcatccctgaaggcacgctctgaccctgcgcccacagCTCTGCCTTACTGAGGCAGCCACAGATGAGTGTAATGTGATAGAAGTTCGTGGCCCGGGACTATGATAACCAGGAAATTGCAGTTTCTGTTGCAAACCTCAGGCTGTCTTGTCAACCGATGgtgtgtttgaaccattcatttctgttgggccctaacaggattaataactt Alignment from Exonerate_coding2genome CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTT-GTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tttctgcagccaatcatccctgaaggcacgctctgaccctgcgcccacagCTCTGCCTTACTGAGGCAGCCACAGATGAGTGTAATGTGATAGAAGTTCGTGGCCCGGGACTATGATAACCAGGAAATTGCAGTTTCTGTTGCAAACCTCAGGCTGTCTTGTCAACCGATGgtgtgtttgaaccattcatttctgttgggccctaacaggattaataactt Alignment from GeneWise CTGTGCCTTACCGAGGGGGCCACGGACGAGTGTAATGTGGTGGAAGTT-GTGGCCCGGGATCACGACAATCAGGAGATTGCAGTTCCTGTGGCCAACCTCAGGTTGTCTTGCCAGCCCATG tttctgcagccaatcatccctgaaggcacgctctgaccctgcgcccacagCTCTGCCTTACTGAGGCAGCCACAGATGAGTGTAATGTGATAGAAGTTCGTGGCCCGGGACTATGATAACCAGGAAATTGCAGTTTCTGTTGCAAACCTCAGGCTGTCTTGTCAACCGATGgtgtgtttgaaccattcatttctgttgggccctaacaggattaataactt #### Npm3_ID9578_2 --> 2 - 0 Original Alignment gtTGTGAGCTCTCCGGCCACACCCGC-TCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG ggtttgttccagggtgaacctaggaggctgtgtatcttcttctctccaaggtTGTGAGCTCTCTGATCACACACGCCTCCTTCACTTTCAATGTTGCAGAGGAAGATGACACAGAGCAGGTGCTGGCATTGAACATGgtgagggctacagaaggagtttgaggtcaggcacacctgtggtcttatct Alignment from CESAR gtTGTGAGCTCTCCGGCCACACCCGC-TCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG ggtttgttccagggtgaacctaggaggctgtgtatcttcttctctccaaggtTGTGAGCTCTCTGATCACACACGCCTCCTTCACTTTCAATGTTGCAGAGGAAGATGACACAGAGCAGGTGCTGGCATTGAACATGgtgagggctacagaaggagtttgaggtcaggcacacctgtggtcttatct Alignment from Spaln_aa2Genome GTTGTGAGCTCTCCGGCCACACCCGC-TCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG ggtttgttccagggtgaacctaggaggctgtgtatcttcttctctccaagGTTGTGAGCTCTCTGATCACACACGCcTCCTTCACTTTCAATGTTGCAGAGGAAGATGACACAGAGCAGGTGCTGGCATTGAACATGgtgagggctacagaaggagtttgaggtcaggcacacctgtggtcttatct Alignment from Spaln_nt2Genome GTTGTGAGCTCTCCGGCCACACCCGC-TCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG ggtttgttccagggtgaacctaggaggctgtgtatcttcttctctccaagGTTGTGAGCTCTCTGATCACACACGCCTCCTTCACTTTCAATGTTGCAGAGGAAGATGACACAGAGCAGGTGCTGGCATTGAACATGgtgagggctacagaaggagtttgaggtcaggcacacctgtggtcttatct Alignment from Pairagon GTTGTGAGCTCTCCGGCCACACCCG-CTCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG ggtttgttccagggtgaacctaggaggctgtgtatcttcttctctccaagGTTGTGAGCTCTCTGATCACACACGCCTCCTTCACTTTCAATGTTGCAGAGGAAGATGACACAGAGCAGGTGCTGGCATTGAACATGgtgagggctacagaaggagtttgaggtcaggcacacctgtggtcttatct Alignment from Exonerate_protein2genome GTTGTGAGCTCTCCGGCCACACCCGC-TCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG ggtttgttccagggtgaacctaggaggctgtgtatcttcttctctccaagGTTGTGAGCTCTCTGATCACACACGCCTCCTTCACTTTCAATGTTGCAGAGGAAGATGACACAGAGCAGGTGCTGGCATTGAACATGgtgagggctacagaaggagtttgaggtcaggcacacctgtggtcttatct Alignment from Exonerate_coding2genome GTTGTGAGCTCTCCGGCCACACCCGC-TCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG ggtttgttccagggtgaacctaggaggctgtgtatcttcttctctccaagGTTGTGAGCTCTCTGATCACACACGCCTCCTTCACTTTCAATGTTGCAGAGGAAGATGACACAGAGCAGGTGCTGGCATTGAACATGgtgagggctacagaaggagtttgaggtcaggcacacctgtggtcttatct Alignment from GeneWise GTTGTGAGCTCTCCGGCCACACCCGC-TCCTTCACTTTCAAGGTTGAGGAGGAGGATGACACGGAGCACGTGCTGGCGTTGAACATG ggtttgttccagggtgaacctaggaggctgtgtatcttcttctctccaagGTTGTGAGCTCTCTGATCACACACGCCTCCTTCACTTTCAATGTTGCAGAGGAAGATGACACAGAGCAGGTGCTGGCATTGAACATGgtgagggctacagaaggagtttgaggtcaggcacacctgtggtcttatct #### Nt5c2_ID10036_17 --> 0 - 0 Original Alignment AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCG-GCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG tcattgccgaaggattagatatagttgcaagattgttgcttatttttcagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGCAGTAGCTCCCAGCAGACACTCTTTGCCAGCCTGGTTATGCGTTATGCAGACCTCTACACACTCCTCATTCATTAACCTGCTGTACTACCCGTTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtaagtactgatcctcacaactgacagttgacgtaatgccatagtcgcta Alignment from CESAR AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCG-GCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG tcattgccgaaggattagatatagttgcaagattgttgcttatttttcagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGCAGTAGCTCCCAGCAGACACTCTTTGCCAGCCTGGTTATGCGTTATGCAGACCTCTACACACTCCTCATTCATTAACCTGCTGTACTACCCGTTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtaagtactgatcctcacaactgacagttgacgtaatgccatagtcgcta Alignment from Spaln_aa2Genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCG-GCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG tcattgccgaaggattagatatagttgcaagattgttgcttatttttcagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGCAGTAGCTCCCAGCAGACACTCTTTGCCAGCCTGGTTATGCGTTATGCAGACCTCTACACAcTCCTCATTCATTAACCTGCTGTACTACCCGTTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtaagtactgatcctcacaactgacagttgacgtaatgccatagtcgcta Alignment from Spaln_nt2Genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGG-CCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG tcattgccgaaggattagatatagttgcaagattgttgcttatttttcagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGCAGTAGCTCCCAGCAGACACTCTTTGCCAGCCTGGTTATGCGTTATGCAGACCTCTACACACTCCTCATTCATTAACCTGCTGTACTACCCGTTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtaagtactgatcctcacaactgacagttgacgtaatgccatagtcgcta Alignment from Pairagon AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCGG-CCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG tcattgccgaaggattagatatagttgcaagattgttgcttatttttcagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGCAGTAGCTCCCAGCAGACACTCTTTGCCAGCCTGGTTATGCGTTATGCAGACCTCTACACACTCCTCATTCATTAACCTGCTGTACTACCCGTTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtaagtactgatcctcacaactgacagttgacgtaatgccatagtcgcta Alignment from Exonerate_protein2genome AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTATGCG-GCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG tcattgccgaaggattagatatagttgcaagattgttgcttatttttcagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGCAGTAGCTCCCAGCAGACACTCTTTGCCAGCCTGGTTATGCGTTATGCAGACCTCTACACACTCCTCATTCATTAACCTGCTGTACTACCCGTTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtaagtactgatcctcacaactgacagttgacgtaatgccatagtcgcta Alignment from Exonerate_coding2genome tcattgccgaaggattagatatagttgcaagattgttgcttatttttcaggaagtaactcatgacatggacatgtgctatggcatgatgggaagtctgttccgcagtagctcccagcagacactctttgccagcctggttatgcgttatgcagacctctacacactcctcattcattaacctgctgtactacccgttcagttacctcttcagagctgcccatgtcctggtaagtactgatcctcacaactgacagttgacgtaatgccatagtcgcta Alignment from GeneWise AAAGTAACTCATGACATGGACATGTGCTATGGGATGATGGGAAGCCTGTTCCGCAGCGGCTCCCGGCAGACACTCTTTGCCAGCCAAGTGATGCGCTATGCAGATCTCTAT-GCGGCCTCGTTCATCAACCTGCTGTACTACCCATTCAGCTACCTCTTCAGAGCTGCCCATGTCCTG tcattgccgaaggattagatatagttgcaagattgttgcttatttttcagGAAGTAACTCATGACATGGACATGTGCTATGGCATGATGGGAAGTCTGTTCCGCAGTAGCTCCCAGCAGACACTCTTTGCCAGCCTGGTTATGCGTTATGCAGACCTCTACACACTCCTCATTCATTAACCTGCTGTACTACCCGTTCAGTTACCTCTTCAGAGCTGCCCATGTCCTGgtaagtactgatcctcacaactgacagttgacgtaatgccatagtcgcta #### Nt5c2_ID10037_16 --> 1 - 0 Original Alignment gCACCTGGACAGCAGT-AGCAATGAGCGCCCGGACATTAGTTCCATCCAGAGACGGATTAAG tccaaccgggagtgttttctcttagaccgtgtgtgcttgtctccctgcaggCATTTGGACAGCAGTCAGC------------AATATTAGTCCTATCCAAAGACAGATTAAGgtaaggagattgcatctgggggacaatattaggtgttagctgttccagta Alignment from CESAR gCACCTGGACAGCAGT-AGCAATGAGCGCCCGGACATTAGTTCCATCCAGAGACGGATTAAG tccaaccgggagtgttttctcttagaccgtgtgtgcttgtctccctgcaggCATTTGGACAGCAGTCAGCAAT------------ATTAGTCCTATCCAAAGACAGATTAAGgtaaggagattgcatctgggggacaatattaggtgttagctgttccagta Alignment from Spaln_aa2Genome GCACCTGGACAGCAGTAGCAATGAGCGCCCGGACATTAGTTCCATCCAGAGACGGATTAAG tccaaccgggagtgttttctcttagaccgtgtgtgcttgtctccctgcagGCATTTGGACAGCAGTC-----------AGCAATATTAGTCCTATCCAAAGACAGATTAAGgtaaggagattgcatctgggggacaatattaggtgttagctgttccagta Alignment from Spaln_nt2Genome GCACCTGGACAGCAGT-AGCAATGAGCGCCCGGACATTAGTTCCATCCAGAGACGGATTAAG tccaaccgggagtgttttctcttagaccgtgtgtgcttgtctccctgcagGCATTTGGACAGCAGTCAGCAAT------------ATTAGTCCTATCCAAAGACAGATTAAGgtaaggagattgcatctgggggacaatattaggtgttagctgttccagta Alignment from Pairagon GCACCTGGACAGCAGT-AGCAATGAGCGCCCGGACATTAGTTCCATCCAGAGACGGATTAAG tccaaccgggagtgttttctcttagaccgtgtgtgcttgtctccctgcagGCATTTGGACAGCAGTCAGCAAT------------ATTAGTCCTATCCAAAGACAGATTAAGgtaaggagattgcatctgggggacaatattaggtgttagctgttccagta Alignment from Exonerate_protein2genome GTAGC---AATGAGCGCCCGGACATTAGTTCCATCCAGAGACGGATTAAG tccaaccgggagtgttttctcttagaccgtgtgtgcttgtctccctgcagGCATTTGGACAGCAGTCAGCAATATTAGTCCTATCCAAAGACAGATTAAGgtaaggagattgcatctgggggacaatattaggtgttagctgttccagta Alignment from Exonerate_coding2genome tccaaccgggagtgttttctcttagaccgtgtgtgcttgtctccctgcaggcatttggacagcagtcagcaatattagtcctatccaaagacagattaaggtaaggagattgcatctgggggacaatattaggtgttagctgttccagta Alignment from GeneWise tccaaccgggagtgttttctcttagaccgtgtgtgcttgtctccctgcaggcatttggacagcagtcagcaatattagtcctatccaaagacagattaaggtaaggagattgcatctgggggacaatattaggtgttagctgttccagta #### Nudt22_ID1971_4 --> 1 - 0 Original Alignment gTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGA-ATCATCTTTGTGGAGACACAG ggattcagcaccacaaatatatcctgggatgtattttacttcccctttaggTGCAGCTTGACTTCAGAGGAGGTCAGGAGCTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGACATCATCTTTGTGGAAACGCAGgtggacgaatttaccttccagttggctgctagtacattcagggttattaa Alignment from CESAR gTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGA-ATCATCTTTGTGGAGACACAG ggattcagcaccacaaatatatcctgggatgtattttacttcccctttaggTGCAGCTTGACTTCAGAGGAGGTCAGGAGCTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGACATCATCTTTGTGGAAACGCAGgtggacgaatttaccttccagttggctgctagtacattcagggttattaa Alignment from Spaln_aa2Genome GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGA-ATCATCTTTGTGGAGACACAG ggattcagcaccacaaatatatcctgggatgtattttacttcccctttagGTGCAGCTTGACTTCAGAGGAGGTCAGGAGCTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGAcATCATCTTTGTGGAAACGCAGgtggacgaatttaccttccagttggctgctagtacattcagggttattaa Alignment from Spaln_nt2Genome GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGA-ATCATCTTTGTGGAGACACAG ggattcagcaccacaaatatatcctgggatgtattttacttcccctttagGTGCAGCTTGACTTCAGAGGAGGTCAGGAGCTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGACATCATCTTTGTGGAAACGCAGgtggacgaatttaccttccagttggctgctagtacattcagggttattaa Alignment from Pairagon GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGA-ATCATCTTTGTGGAGACACAG ggattcagcaccacaaatatatcctgggatgtattttacttcccctttagGTGCAGCTTGACTTCAGAGGAGGTCAGGAGCTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGACATCATCTTTGTGGAAACGCAGgtggacgaatttaccttccagttggctgctagtacattcagggttattaa Alignment from Exonerate_protein2genome GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGA-ATCATCTTTGTGGAGACACAG ggattcagcaccacaaatatatcctgggatgtattttacttcccctttagGTGCAGCTTGACTTCAGAGGAGGTCAGGAGCTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGACATCATCTTTGTGGAAACGCAGgtggacgaatttaccttccagttggctgctagtacattcagggttattaa Alignment from Exonerate_coding2genome GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGA-ATCATCTTTGTGGAGACACAG ggattcagcaccacaaatatatcctgggatgtattttacttcccctttagGTGCAGCTTGACTTCAGAGGAGGTCAGGAGCTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGACATCATCTTTGTGGAAACGCAGgtggacgaatttaccttccagttggctgctagtacattcagggttattaa Alignment from GeneWise GTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGA-ATCATCTTTGTGGAGACACAG ggattcagcaccacaaatatatcctgggatgtattttacttcccctttagGTGCAGCTTGACTTCAGAGGAGGTCAGGAGCTATTACCTGAGTGGGGGACCTGAGGCCCACGAGTCTACAGGACATCATCTTTGTGGAAACGCAGgtggacgaatttaccttccagttggctgctagtacattcagggttattaa #### Nudt8_ID267_2 --> 1 - 0 Original Alignment tTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAG-GAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaacattataaacctagctgtggccccctctgcatctttcttcttgaagtTTCCCAGGTGGTAAGTGTGACCCTGATGACCGAGATGTTGTAATACACACTGCCCTTCAGGAGACACAGGAGGAATTAGACTTG---GTACCCAAGCGAGCACGTTTGGGGGGTGCTGCAACCCGTGCATGACCGGgtaagttttttacactacaatagcaaaaccctatcatccagatgactgag Alignment from CESAR tTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAG-GAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaacattataaacctagctgtggccccctctgcatctttcttcttgaagtTTCCCAGGTGGTAAGTGTGACCCTGATGACCGAGATGTTGTAATACACACTGCCCTTCAGGAGACACAGGAGGAATTAGACTTG---GTACCCAAGCGAGCACGTTTGGGGGGTGCTGCAACCCGTGCATGACCGGgtaagttttttacactacaatagcaaaaccctatcatccagatgactgag Alignment from Spaln_aa2Genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAG-GAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaacattataaacctagctgtggccccctctgcatctttcttcttgaagTTTCCCAGGTGGTAAGTGTGACCCTGATGACCGAGATGTTGTAATACACACTGCCCTTCAGGAGACACAGGAGGAATTAGACTTG---GTACCCAAGcGAGCACGTTTGGGGGGTGCTGCAACCCGTGCATGACCGGgtaagttttttacactacaatagcaaaaccctatcatccagatgactgag Alignment from Spaln_nt2Genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGA---TGTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAG-GAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaacattataaacctagctgtggccccctctgcatctttcttcttgaagTTTCCCAGGTGGTAAGTGTGACCCTGATGACCGAGATGTTGTAATACACACTGCCCTTCAGGAGACACAGGAGGAATTAGACTT---GGTACCCAAGCGAGCACGTTTGGGGGGTGCTGCAACCCGTGCATGACCGGgtaagttttttacactacaatagcaaaaccctatcatccagatgactgag Alignment from Pairagon TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGA---TGTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAG-GAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaacattataaacctagctgtggccccctctgcatctttcttcttgaagTTTCCCAGGTGGTAAGTGTGACCCTGATGACCGAGATGTTGTAATACACACTGCCCTTCAGGAGACACAGGAGGAATTAGACTT---GGTACCCAAGCGAGCACGTTTGGGGGGTGCTGCAACCCGTGCATGACCGGgtaagttttttacactacaatagcaaaaccctatcatccagatgactgag Alignment from Exonerate_protein2genome TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGAT---GTAATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAG-GAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaacattataaacctagctgtggccccctctgcatctttcttcttgaagTTTCCCAGGTGGTAAGTGTGACCCTGATGACCGAGATGTTGTAATACACACTGCCCTTCAGGAGACACAGGAGGAATTAGACTTG---GTACCCAAGCGAGCACGTTTGGGGGGTGCTGCAACCCGTGCATGACCGGgtaagttttttacactacaatagcaaaaccctatcatccagatgactgag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TTTCCCAGGCGGTAAGTGTGATCCCGACGACCAAGATGTA---ATACATACGGCCCTTCGGGAGACTCAGGAGGAGCTGGGCCTAGAGGTGCCCAAGGAGCACGTGTGGGGTGTCCTGCAGCCAGTGTATGACCGG taaacattataaacctagctgtggccccctctgcatctttcttcttgaagTTTCCCAGGTGGTAAGTGTGACCCTGATGACCGAGATGTTGTAATACACACTGCCCTTCAGGAGACACAGGAGGAATTAGACTTGG--TACCCAAGCGAGCACGTTTGGGGGGTGCTGCAACCCGTGCATGACCGGgtaagttttttacactacaatagcaaaaccctatcatccagatgactgag #### Nudt8_ID268_3 --> 0 - 0 Original Alignment GAAAAGGCAACCATA-GTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ttggcaaaggacatctggacctgattgcaccccagtttgttttctttcagGACAAGGCAATCTTACGTCCCTGTTCTTGCTAATGTGGGCCCATTGGATCTACAGAGCCTGAGGCCCAACCTTGAGGAAgtaaggggtgtactttgaggatagggagacctaagagtggatgcatggcc Alignment from CESAR GAAAAGGCAACCATA-GTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ttggcaaaggacatctggacctgattgcaccccagtttgttttctttcagGACAAGGCAATCTTACGTCCCTGTTCTTGCTAATGTGGGCCCATTGGATCTACAGAGCCTGAGGCCCAACCTTGAGGAAgtaaggggtgtactttgaggatagggagacctaagagtggatgcatggcc Alignment from Spaln_aa2Genome GAAAAGGCAACCATA-GTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ttggcaaaggacatctggacctgattgcaccccagtttgttttctttcagGACAAGGCAATCTTAcGTCCCTGTTCTTGCTAATGTGGGCCCATTGGATCTACAGAGCCTGAGGCCCAACCTTGAGGAAgtaaggggtgtactttgaggatagggagacctaagagtggatgcatggcc Alignment from Spaln_nt2Genome GAAAAGGCAACCATA-GTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ttggcaaaggacatctggacctgattgcaccccagtttgttttctttcagGACAAGGCAATCTTACGTCCCTGTTCTTGCTAATGTGGGCCCATTGGATCTACAGAGCCTGAGGCCCAACCTTGAGGAAgtaaggggtgtactttgaggatagggagacctaagagtggatgcatggcc Alignment from Pairagon GAAAAGGCAACCATA-GTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ttggcaaaggacatctggacctgattgcaccccagtttgttttctttcagGACAAGGCAATCTTACGTCCCTGTTCTTGCTAATGTGGGCCCATTGGATCTACAGAGCCTGAGGCCCAACCTTGAGGAAgtaaggggtgtactttgaggatagggagacctaagagtggatgcatggcc Alignment from Exonerate_protein2genome GAAAAGGCAACCATAGTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ttggcaaaggacatctggacctgattgcaccccagtttgttttctttcaggACAAGGCAATCTTACGTCCCTGTTCTTGCTAATGTGGGCCCATTGGATCTACAGAGCCTGAGGCCCAACCTTGAGGAAgtaaggggtgtactttgaggatagggagacctaagagtggatgcatggcc Alignment from Exonerate_coding2genome GAAAAGGCAACCATAGTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ttggcaaaggacatctggacctgattgcaccccagtttgttttctttcaggACAAGGCAATCTTACGTCCCTGTTCTTGCTAATGTGGGCCCATTGGATCTACAGAGCCTGAGGCCCAACCTTGAGGAAgtaaggggtgtactttgaggatagggagacctaagagtggatgcatggcc Alignment from GeneWise GAAAAGGCA-ACCATAGTCCCAGTACTTGCCAACGTGGGCCCACTGGATCTGCAGAGCCTTAGGCCCAACCTTGAGGAG ttggcaaaggacatctggacctgattgcaccccagtttgttttctttcagGACAAGGCAATCTTACGTCCCTGTTCTTGCTAATGTGGGCCCATTGGATCTACAGAGCCTGAGGCCCAACCTTGAGGAAgtaaggggtgtactttgaggatagggagacctaagagtggatgcatggcc #### Nxf1_ID2345_5 --> 0 - 0 Original Alignment TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAAC-CATAAGATC---CAGGATCGAGAAAACAGAAGG tgagcagctgatgatggatgtggggtacctgtggactcctttttcctcagTTTCACTATGAAAATACACGCACTCATTTCTTTGTGGAGGATGCAACTACTGGTTCCACATTAAAAGGTGTAAACCCATAAGATCATCCAGGATCGAGAGAACAGACGGgcaagtagacagcagacaccattaaaatggactgattgttacaacttttt Alignment from CESAR TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAAC-CATAAGATC---CAGGATCGAGAAAACAGAAGG tgagcagctgatgatggatgtggggtacctgtggactcctttttcctcagTTTCACTATGAAAATACACGCACTCATTTCTTTGTGGAGGATGCAACTACTGGTTCCACATTAAAAGGTGTAAACCCATAAGATCATCCAGGATCGAGAGAACAGACGGgcaagtagacagcagacaccattaaaatggactgattgttacaacttttt Alignment from Spaln_aa2Genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAAC-CATAAG---ATCCAGGATCGAGAAAACAGAAGG tgagcagctgatgatggatgtggggtacctgtggactcctttttcctcagTTTCACTATGAAAATACACGCACTCATTTCTTTGTGGAGGATGCAACTACTGGTTCCACATTAAAAGGTGTAAACcCATAAGATCATCCAGGATCGAGAGAACAGACGGgcaagtagacagcagacaccattaaaatggactgattgttacaacttttt Alignment from Spaln_nt2Genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAACC-ATAAGATC---CAGGATCGAGAAAACAGAAGG tgagcagctgatgatggatgtggggtacctgtggactcctttttcctcagTTTCACTATGAAAATACACGCACTCATTTCTTTGTGGAGGATGCAACTACTGGTTCCACATTAAAAGGTGTAAACCCATAAGATCATCCAGGATCGAGAGAACAGACGGgcaagtagacagcagacaccattaaaatggactgattgttacaacttttt Alignment from Pairagon TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAA-CCATAAG---ATCCAGGATCGAGAAAACAGAAGG tgagcagctgatgatggatgtggggtacctgtggactcctttttcctcagTTTCACTATGAAAATACACGCACTCATTTCTTTGTGGAGGATGCAACTACTGGTTCCACATTAAAAGGTGTAAACCCATAAGATCATCCAGGATCGAGAGAACAGACGGgcaagtagacagcagacaccattaaaatggactgattgttacaacttttt Alignment from Exonerate_protein2genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAAC----CATAAGATCCAGGATCGAGAAAACAGAAGG tgagcagctgatgatggatgtggggtacctgtggactcctttttcctcagTTTCACTATGAAAATACACGCACTCATTTCTTTGTGGAGGATGCAACTACTGGTTCCACATTAAAAGGTGTAAACCCATAAGATCATCCAGGATCGAGAGAACAGACGGgcaagtagacagcagacaccattaaaatggactgattgttacaacttttt Alignment from Exonerate_coding2genome TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGTGTCAAC----CATAAGATCCAGGATCGAGAAAACAGAAGG tgagcagctgatgatggatgtggggtacctgtggactcctttttcctcagTTTCACTATGAAAATACACGCACTCATTTCTTTGTGGAGGATGCAACTACTGGTTCCACATTAAAAGGTGTAAACCCATAAGATCATCCAGGATCGAGAGAACAGACGGgcaagtagacagcagacaccattaaaatggactgattgttacaacttttt Alignment from GeneWise TTTCACTATGAAAATACACGGGCCCATTTTTTTGTGGAGGATGCCACTACTGCTTCTGCATTAAAGGGT tgagcagctgatgatggatgtggggtacctgtggactcctttttcctcagTTTCACTATGAAAATACACGCACTCATTTCTTTGTGGAGGATGCAACTACTGGTTCCACATTAAAAGGTgtaaacccataagatcatccaggatcgagagaacagacgggcaagtagacagcagacaccattaaaatggactgattgttacaacttttt #### Nxf1_ID2348_8 --> 2 - 0 Original Alignment atTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCC-ACCCTGCGGATCATTGAAGAGAACATTCCTGAG gctatgggcaccaattttgagtcgttcctgtggccaccatctacccacagatTTGGTAGCTCAGAACATTGTTGTCATTCTAAACCGCAGGAGCTGCATGGCAGCACACTGTCCGCACCATCAAGGAGAATATTCCTGAGgtgggcgttctttctctcccttatcatctaatcattctaacttaattaga Alignment from CESAR atTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCC-ACCCTGCGGATCATTGAAGAGAACATTCCTGAG gctatgggcaccaattttgagtcgttcctgtggccaccatctacccacagatTTGGTAGCTCAGAACATTGTTGTCATTCTAAACCGCAGGAGCTGCATGGCAGCACACTGTCCGCACCATCAAGGAGAATATTCCTGAGgtgggcgttctttctctcccttatcatctaatcattctaacttaattaga Alignment from Spaln_aa2Genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCC-ACCCTGCGGATCATTGAAGAGAACATTCCTGAG gctatgggcaccaattttgagtcgttcctgtggccaccatctacccacagATTTGGTAGCTCAGAACATTGTTGTCATTCTAAACCGCAGGAGCTGCATGGCAGCAcACTGTCCGCACCATCAAGGAGAATATTCCTGAGgtgggcgttctttctctcccttatcatctaatcattctaacttaattaga Alignment from Spaln_nt2Genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGC-CACCCTGCGGATCATTGAAGAGAACATTCCTGAG gctatgggcaccaattttgagtcgttcctgtggccaccatctacccacagATTTGGTAGCTCAGAACATTGTTGTCATTCTAAACCGCAGGAGCTGCATGGCAGCACACTGTCCGCACCATCAAGGAGAATATTCCTGAGgtgggcgttctttctctcccttatcatctaatcattctaacttaattaga Alignment from Pairagon ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGC-CACCCTGCGGATCATTGAAGAGAACATTCCTGAG gctatgggcaccaattttgagtcgttcctgtggccaccatctacccacagATTTGGTAGCTCAGAACATTGTTGTCATTCTAAACCGCAGGAGCTGCATGGCAGCACACTGTCCGCACCATCAAGGAGAATATTCCTGAGgtgggcgttctttctctcccttatcatctaatcattctaacttaattaga Alignment from Exonerate_protein2genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCC-ACCCTGCGGATCATTGAAGAGAACATTCCTGAG gctatgggcaccaattttgagtcgttcctgtggccaccatctacccacagATTTGGTAGCTCAGAACATTGTTGTCATTCTAAACCGCAGGAGCTGCATGGCAGCACACTGTCCGCACCATCAAGGAGAATATTCCTGAGgtgggcgttctttctctcccttatcatctaatcattctaacttaattaga Alignment from Exonerate_coding2genome ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCAGCC-ACCCTGCGGATCATTGAAGAGAACATTCCTGAG gctatgggcaccaattttgagtcgttcctgtggccaccatctacccacagATTTGGTAGCTCAGAACATTGTTGTCATTCTAAACCGCAGGAGCTGCATGGCAGCACACTGTCCGCACCATCAAGGAGAATATTCCTGAGgtgggcgttctttctctcccttatcatctaatcattctaacttaattaga Alignment from GeneWise ATTTGGTGGCCCAGAACATCGATGTTGTTCTAAACCGCAGAAGCTGTATGGCA-GCCACCCTGCGGATCATTGAAGAGAACATTCCTGAG gctatgggcaccaattttgagtcgttcctgtggccaccatctacccacagATTTGGTAGCTCAGAACATTGTTGTCATTCTAAACCGCAGGAGCTGCATGGCAGCACACTGTCCGCACCATCAAGGAGAATATTCCTGAGgtgggcgttctttctctcccttatcatctaatcattctaacttaattaga #### Nxf1_ID2352_12 --> 0 - 0 Original Alignment GATGGCCATGAGCTACCC-CCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG ctcaacaagcccaggtcatatcaagttttgacttcatcacctgcccacagGATGGCCATGAGCTACCCCCCTCCAATTTCTTTCGATGTTGAAGCTCCTACAATGTTACCACCCTGTAAGgtgagagttgggttcaccttagaaatttgagagaagagatcactggtcat Alignment from CESAR GATGGCCATGAGCTA-CCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG ctcaacaagcccaggtcatatcaagttttgacttcatcacctgcccacagGATGGCCATGAGCTACCCCCCTCCAATTTCTTTCGATGTTGAAGCTCCTACAATGTTACCACCCTGTAAGgtgagagttgggttcaccttagaaatttgagagaagagatcactggtcat Alignment from Spaln_aa2Genome GATGGCCATGAGCTACCCCCT-CCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG ctcaacaagcccaggtcatatcaagttttgacttcatcacctgcccacagGATGGCCATGAGCTACCCCCCtCCAATTTCTTTCGATGTTGAAGCTCCTACAATGTTACCACCCTGTAAGgtgagagttgggttcaccttagaaatttgagagaagagatcactggtcat Alignment from Spaln_nt2Genome GATGGCCATGAGCTA-CCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG ctcaacaagcccaggtcatatcaagttttgacttcatcacctgcccacagGATGGCCATGAGCTACCCCCCTCCAATTTCTTTCGATGTTGAAGCTCCTACAATGTTACCACCCTGTAAGgtgagagttgggttcaccttagaaatttgagagaagagatcactggtcat Alignment from Pairagon GATGGCCATGAGCTA-CCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG ctcaacaagcccaggtcatatcaagttttgacttcatcacctgcccacagGATGGCCATGAGCTACCCCCCTCCAATTTCTTTCGATGTTGAAGCTCCTACAATGTTACCACCCTGTAAGgtgagagttgggttcaccttagaaatttgagagaagagatcactggtcat Alignment from Exonerate_protein2genome GATGGCCATGAGCTA-CCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG ctcaacaagcccaggtcatatcaagttttgacttcatcacctgcccacagGATGGCCATGAGCTACCCCCCTCCAATTTCTTTCGATGTTGAAGCTCCTACAATGTTACCACCCTGTAAGgtgagagttgggttcaccttagaaatttgagagaagagatcactggtcat Alignment from Exonerate_coding2genome GATGGCCATGAGCTA-CCCCCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG ctcaacaagcccaggtcatatcaagttttgacttcatcacctgcccacagGATGGCCATGAGCTACCCCCCTCCAATTTCTTTCGATGTTGAAGCTCCTACAATGTTACCACCCTGTAAGgtgagagttgggttcaccttagaaatttgagagaagagatcactggtcat Alignment from GeneWise -------CCTCCAATTTCCTTTGATGTCGAAGCCCCTACAATGTTACCACCCTGCAAG ctcaacaagcccaggtcatatcaagttttgacttcatcacctgcccacaggatggccatgagCTACCCCCCTCCAATTTCTTTCGATGTTGAAGCTCCTACAATGTTACCACCCTGTAAGgtgagagttgggttcaccttagaaatttgagagaagagatcactggtcat #### Nxf1_ID2354_14 --> 1 - 2 Original Alignment gTACTATGTAATTTATGACTCAGGA-GACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCcg taacaattggattatacatatctaggggcctggcttgatgcaccccctaggTACTTTGTCATTTGTGACTTGGGACGACCGTCAGGGTCTTCAGTATGCCTACCATGATGGTGCTTGTTGCTCTTTGGGCATCCCTTACAACCCTCAGAACCCTGTCaggtgaaggtatatgttttactctatctggaattgtaaaactccccgccaga Alignment from CESAR gTACTATGTAATTTATGACTCAGGA-GACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCcg taacaattggattatacatatctaggggcctggcttgatgcaccccctaggTACTTTGTCATTTGTGACTTGGGACGACCGTCAGGGTCTTCAGTATGCCTACCATGATGGTGCTTGTTGCTCTTTGGGCATCCCTTACAACCCTCAGAACCCTGTCaggtgaaggtatatgttttactctatctggaattgtaaaactccccgccaga Alignment from Spaln_aa2Genome GTACTATGTAATTTATGACTCAGGA-GACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG taacaattggattatacatatctaggggcctggcttgatgcaccccctagGTACTTTGTCATTTGTGACTTGGGAcGACCGTCAGGGTCTTCAGTATGCCTACCATGATGGTGCTTGTTGCTCTTTGGGCATCCCTTACAACCCTCAGAACCCTGTCAGgtgaaggtatatgttttactctatctggaattgtaaaactccccgccaga Alignment from Spaln_nt2Genome GTACTATGTAATTTATGACTCAGGA-GACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG taacaattggattatacatatctaggggcctggcttgatgcaccccctagGTACTTTGTCATTTGTGACTTGGGACGACCGTCAGGGTCTTCAGTATGCCTACCATGATGGTGCTTGTTGCTCTTTGGGCATCCCTTACAACCCTCAGAACCCTGTCAGgtgaaggtatatgttttactctatctggaattgtaaaactccccgccaga Alignment from Pairagon GTACTATGTAATTTATGACTCAGGA-GACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG taacaattggattatacatatctaggggcctggcttgatgcaccccctagGTACTTTGTCATTTGTGACTTGGGACGACCGTCAGGGTCTTCAGTATGCCTACCATGATGGTGCTTGTTGCTCTTTGGGCATCCCTTACAACCCTCAGAACCCTGTCAGgtgaaggtatatgttttactctatctggaattgtaaaactccccgccaga Alignment from Exonerate_protein2genome GTACTATGTAATTTATGACTCAGGA-GACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG taacaattggattatacatatctaggggcctggcttgatgcaccccctagGTACTTTGTCATTTGTGACTTGGGACGACCGTCAGGGTCTTCAGTATGCCTACCATGATGGTGCTTGTTGCTCTTTGGGCATCCCTTACAACCCTCAGAACCCTGTCAGgtgaaggtatatgttttactctatctggaattgtaaaactccccgccaga Alignment from Exonerate_coding2genome GTACTATGTAATTTATGACTCAGGA-GACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG taacaattggattatacatatctaggggcctggcttgatgcaccccctagGTACTTTGTCATTTGTGACTTGGGACGACCGTCAGGGTCTTCAGTATGCCTACCATGATGGTGCTTGTTGCTCTTTGGGCATCCCTTACAACCCTCAGAACCCTGTCAGgtgaaggtatatgttttactctatctggaattgtaaaactccccgccaga Alignment from GeneWise GTACTATGTAATTTATGAC-TCAGGAGACCGCCAGGGTCTCCTGTATGCCTACCATGATGGCGCCTGTTGCTCGCTAAGCATTCCTTACAACCCTCAGAATCCTGTCCG taacaattggattatacatatctaggggcctggcttgatgcaccccctagGTACTTTGTCATTTGTGACTTGGGACGACCGTCAGGGTCTTCAGTATGCCTACCATGATGGTGCTTGTTGCTCTTTGGGCATCCCTTACAACCCTCAGAACCCTGTCAGgtgaaggtatatgttttactctatctggaattgtaaaactccccgccaga #### Nxf1_ID2356_16 --> 2 - 0 Original Alignment ccCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAAC-GCCTTCGTGGTAGATATAAGTGCCCAAACA gaaatctaattctaaagcctacaattggctttctctggtactgggtttagccCAGCGGTTCCGACTCCTAAAGCATACACGTTTGAATGTTGTTGCCTTTCTTAATGCATTACCCAAAACCCAACATGATGTCAATCGCCTTTGTAGTAGACATAAGTGCCCAAACAgtaagaatctgttttatgaaacctaacagtggggtgactattgtgctcac Alignment from CESAR ccCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAAC-GCCTTCGTGGTAGATATAAGTGCCCAAACA gaaatctaattctaaagcctacaattggctttctctggtactgggtttagccCAGCGGTTCCGACTCCTAAAGCATACACGTTTGAATGTTGTTGCCTTTCTTAATGCATTACCCAAAACCCAACATGATGTCAATCGCCTTTGTAGTAGACATAAGTGCCCAAACAgtaagaatctgttttatgaaacctaacagtggggtgactattgtgctcac Alignment from Spaln_aa2Genome CCCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAAC-GCCTTCGTGGTAGATATAAGTGCCCAAACA gaaatctaattctaaagcctacaattggctttctctggtactgggtttagCCCAGCGGTTCCGACTCCTAAAGCATACACGTTTGAATGTTGTTGCCTTTCTTAATGCATTACCCAAAACCCAACATGATGTCAATcGCCTTTGTAGTAGACATAAGTGCCCAAACAgtaagaatctgttttatgaaacctaacagtggggtgactattgtgctcac Alignment from Spaln_nt2Genome CCCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAA-CGCCTTCGTGGTAGATATAAGTGCCCAAACA gaaatctaattctaaagcctacaattggctttctctggtactgggtttagCCCAGCGGTTCCGACTCCTAAAGCATACACGTTTGAATGTTGTTGCCTTTCTTAATGCATTACCCAAAACCCAACATGATGTCAATCGCCTTTGTAGTAGACATAAGTGCCCAAACAgtaagaatctgttttatgaaacctaacagtggggtgactattgtgctcac Alignment from Pairagon CCCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAA-CGCCTTCGTGGTAGATATAAGTGCCCAAACA gaaatctaattctaaagcctacaattggctttctctggtactgggtttagCCCAGCGGTTCCGACTCCTAAAGCATACACGTTTGAATGTTGTTGCCTTTCTTAATGCATTACCCAAAACCCAACATGATGTCAATCGCCTTTGTAGTAGACATAAGTGCCCAAACAgtaagaatctgttttatgaaacctaacagtggggtgactattgtgctcac Alignment from Exonerate_protein2genome CCCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAAC-GCCTTCGTGGTAGATATAAGTGCCCAAACAAGCACATTACTG gaaatctaattctaaagcctacaattggctttctctggtactgggtttagCCCAGCGGTTCCGACTCCTAAAGCATACACGTTTGAATGTTGTTGCCTTTCTTAATGCATTACCCAAAACCCAACATGATGTCAATCGCCTTTGTAGTAGACATAAGTGCCCAAACAGTAAGAATCTGTtttatgaaacctaacagtggggtgactattgtgctcac Alignment from Exonerate_coding2genome CCCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAAC-GCCTTCGTGGTAGATATAAGTGCCCAAACA gaaatctaattctaaagcctacaattggctttctctggtactgggtttagCCCAGCGGTTCCGACTCCTAAAGCATACACGTTTGAATGTTGTTGCCTTTCTTAATGCATTACCCAAAACCCAACATGATGTCAATCGCCTTTGTAGTAGACATAAGTGCCCAAACAgtaagaatctgttttatgaaacctaacagtggggtgactattgtgctcac Alignment from GeneWise CCCAGCGGTTCCGACTCTTAAAGCATACACGTCTTAATGTCGTTGCCTTCCTCAATGAGTTACCCAAAACTCAACATGACGTTAAC-GCCTTCGTGGTAGATATAAGTGCCCAAACA gaaatctaattctaaagcctacaattggctttctctggtactgggtttagCCCAGCGGTTCCGACTCCTAAAGCATACACGTTTGAATGTTGTTGCCTTTCTTAATGCATTACCCAAAACCCAACATGATGTCAATCGCCTTTGTAGTAGACATAAGTGCCCAAACAgtaagaatctgttttatgaaacctaacagtggggtgactattgtgctcac #### Nxf1_ID2358_18 --> 2 - 2 Original Alignment tgGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACA-AGAACGTTCATTGCTGTTCCTGCCAGCAATTCAgg agactccttagctcctcaggccatttgaccttttccttttctgttgccagtaGATGGGAAGTCTCGAGACTCTCTACATGCCTTTGCACAGGACATTCATTGCAGTTCCTGCAAGCAATACGgggtaaagagttccgattaagttgagtctatgatgggagtggctggaaaagg Alignment from CESAR tgGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACA-AGAACGTTCATTGCTGTTCCTGCCAGCAATTCAgg agactccttagctcctcaggccatttgaccttttccttttctgttgccagtaGATGGGAAGTCTCGAGACTCTCTACATGCCTTTGCACAGGACATTCATTGCAGTTCCTGCAAGCAATACGgggtaaagagttccgattaagttgagtctatgatgggagtggctggaaaagg Alignment from Spaln_aa2Genome TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACA-AGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG agactccttagctcctcaggccatttgaccttttccttttctgttgccagTAGATGGGAAGTCTCGAGACTCTCTACATGCCTTTGCAcAGGACATTCATTGCAGTTCCTGCAAGCAATACGGGgtaaagagttccgattaagttgagtctatgatgggagtggctggaaaagg Alignment from Spaln_nt2Genome TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACA-AGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG agactccttagctcctcaggccatttgaccttttccttttctgttgccagTAGATGGGAAGTCTCGAGACTCTCTACATGCCTTTGCACAGGACATTCATTGCAGTTCCTGCAAGCAATACGGGgtaaagagttccgattaagttgagtctatgatgggagtggctggaaaagg Alignment from Pairagon TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACA-AGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG agactccttagctcctcaggccatttgaccttttccttttctgttgccagTAGATGGGAAGTCTCGAGACTCTCTACATGCCTTTGCACAGGACATTCATTGCAGTTCCTGCAAGCAATACGGGgtaaagagttccgattaagttgagtctatgatgggagtggctggaaaagg Alignment from Exonerate_protein2genome AAGGAAGTGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACA-AGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG agactccttagctcctcaggccatttgaccttttccttttctgTTGCCAGTAGATGGGAAGTCTCGAGACTCTCTACATGCCTTTGCACAGGACATTCATTGCAGTTCCTGCAAGCAATACGGGgtaaagagttccgattaagttgagtctatgatgggagtggctggaaaagg Alignment from Exonerate_coding2genome TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTCACA-AGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG agactccttagctcctcaggccatttgaccttttccttttctgttgccagTAGATGGGAAGTCTCGAGACTCTCTACATGCCTTTGCACAGGACATTCATTGCAGTTCCTGCAAGCAATACGGGgtaaagagttccgattaagttgagtctatgatgggagtggctggaaaagg Alignment from GeneWise TGGATGGGAAGTCTCGAGATTCTTTACGTGCTTTC-ACAAGAACGTTCATTGCTGTTCCTGCCAGCAATTCAGG agactccttagctcctcaggccatttgaccttttccttttctgttgccagTAGATGGGAAGTCTCGAGACTCTCTACATGCCTTTGCACAGGACATTCATTGCAGTTCCTGCAAGCAATACGGGgtaaagagttccgattaagttgagtctatgatgggagtggctggaaaagg #### Osbp_ID3346_5 --> 2 - 2 Original Alignment atCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGAT-GACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACaa tgttgggagttaagaaccaagagaaacaccccaccccctctgctccccagatCAATGCTGTTCTGGAAAGGGGGACATGAGTAAGGAAGATCGATGAGAATGAATTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAATCTGAGCCACaagtaagacctttggtgggaaaacaaaccgagagatatgcaggtgactcttt Alignment from CESAR atCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGAT-GACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACaa tgttgggagttaagaaccaagagaaacaccccaccccctctgctccccagatCAATGCTGTTCTGGAAAGGGGGACATGAGTAAGGAAGATCGATGAGAATGAATTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAATCTGAGCCACaagtaagacctttggtgggaaaacaaaccgagagatatgcaggtgactcttt Alignment from Spaln_aa2Genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGAT-GACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA tgttgggagttaagaaccaagagaaacaccccaccccctctgctccccagATCAATGCTGTTCTGGAAAGGGGGACATGAGTAAGGAAGATcGATGAGAATGAATTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAATCTGAGCCACAAgtaagacctttggtgggaaaacaaaccgagagatatgcaggtgactcttt Alignment from Spaln_nt2Genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGAT-GACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA tgttgggagttaagaaccaagagaaacaccccaccccctctgctccccagATCAATGCTGTTCTGGAAAGGGGGACATGAGTAAGGAAGATCGATGAGAATGAATTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAATCTGAGCCACAAgtaagacctttggtgggaaaacaaaccgagagatatgcaggtgactcttt Alignment from Pairagon ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGAT-GACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA tgttgggagttaagaaccaagagaaacaccccaccccctctgctccccagATCAATGCTGTTCTGGAAAGGGGGACATGAGTAAGGAAGATCGATGAGAATGAATTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAATCTGAGCCACAAgtaagacctttggtgggaaaacaaaccgagagatatgcaggtgactcttt Alignment from Exonerate_protein2genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGAT-GACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA tgttgggagttaagaaccaagagaaacaccccaccccctctgctccccagATCAATGCTGTTCTGGAAAGGGGGACATGAGTAAGGAAGATCGATGAGAATGAATTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAATCTGAGCCACAAgtaagacctttggtgggaaaacaaaccgagagatatgcaggtgactcttt Alignment from Exonerate_coding2genome ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGAT-GACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA tgttgggagttaagaaccaagagaaacaccccaccccctctgctccccagATCAATGCTGTTCTGGAAAGGGGGACATGAGTAAGGAAGATCGATGAGAATGAATTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAATCTGAGCCACAAgtaagacctttggtgggaaaacaaaccgagagatatgcaggtgactcttt Alignment from GeneWise ATCAGTGCTGTTCTGGCAAAGGGGACATGAGCGATGAAGAT-GACGAGAATGAGTTTTTTGATGCACCAGAGATTATCACCATGCCTGAAAATTTGGGCCACAA tgttgggagttaagaaccaagagaaacaccccaccccctctgctccccagATCAATGCTGTTCTGGAAAGGGGGACATGAGTAAGGAAGATCGATGAGAATGAATTTTTTGATGCACCAGAGATAATCACCATGCCTGAAAATCTGAGCCACAAgtaagacctttggtgggaaaacaaaccgagagatatgcaggtgactcttt #### Osbp_ID3347_6 --> 1 - 0 Original Alignment aCGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGTC-AGCCTTGATGAACAG gatgctgaatcctggatatagctcttttaccgtgttttcttctgacacagaCGTACTGGCAGCAATATCAGTGGGCCCAGCAGTGATGTCCAGCCTTGATGAACAGgtgagtcacccattgcaaattggcacatgcgaacggtctgggagtttgtt Alignment from CESAR aCGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGTC-AGCCTTGATGAACAG gatgctgaatcctggatatagctcttttaccgtgttttcttctgacacagaCGTACTGGCAGCAATATCAGTGGGCCCAGCAGTGATGTCCAGCCTTGATGAACAGgtgagtcacccattgcaaattggcacatgcgaacggtctgggagtttgtt Alignment from Spaln_aa2Genome ACGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGTC-AGCCTTGATGAACAG gatgctgaatcctggatatagctcttttaccgtgttttcttctgacacagACGTACTGGCAGCAATATCAGTGGGCCCAGCAGTGATGTCcAGCCTTGATGAACAGgtgagtcacccattgcaaattggcacatgcgaacggtctgggagtttgtt Alignment from Spaln_nt2Genome ACGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGTC-AGCCTTGATGAACAG gatgctgaatcctggatatagctcttttaccgtgttttcttctgacacagACGTACTGGCAGCAATATCAGTGGGCCCAGCAGTGATGTCCAGCCTTGATGAACAGgtgagtcacccattgcaaattggcacatgcgaacggtctgggagtttgtt Alignment from Pairagon ACGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGT-CAGCCTTGATGAACAG gatgctgaatcctggatatagctcttttaccgtgttttcttctgacacagACGTACTGGCAGCAATATCAGTGGGCCCAGCAGTGATGTCCAGCCTTGATGAACAGgtgagtcacccattgcaaattggcacatgcgaacggtctgggagtttgtt Alignment from Exonerate_protein2genome ACGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGTC-AGCCTTGATGAACAG gatgctgaatcctggatatagctcttttaccgtgttttcttctgacacagACGTACTGGCAGCAATATCAGTGGGCCCAGCAGTGATGTCCAGCCTTGATGAACAGgtgagtcacccattgcaaattggcacatgcgaacggtctgggagtttgtt Alignment from Exonerate_coding2genome ACGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGTC-AGCCTTGATGAACAG gatgctgaatcctggatatagctcttttaccgtgttttcttctgacacagACGTACTGGCAGCAATATCAGTGGGCCCAGCAGTGATGTCCAGCCTTGATGAACAGgtgagtcacccattgcaaattggcacatgcgaacggtctgggagtttgtt Alignment from GeneWise ACGTACTGGCAGCAATATCAGTGGGGCCAGCAGTGATGTC-AGCCTTGATGAACAG gatgctgaatcctggatatagctcttttaccgtgttttcttctgacacagACGTACTGGCAGCAATATCAGTGGGCCCAGCAGTGATGTCCAGCCTTGATGAACAGgtgagtcacccattgcaaattggcacatgcgaacggtctgggagtttgtt #### Otub1_ID2061_5 --> 1 - 0 Original Alignment gTTCAAAGCCGTG-TCTGCCAAGAGTAAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG actggcatccagtaagattactctggcattcaggacttccctcctcacaggTTTAGAGCGGTGCTCAGCTAAGAGTAAAGAAGACTTGGTGTCCCAGGGCATCACTGAGTTCACAATTGAAGACTTCCACAACACAgtatgtaagttcaccaatacttaaccagcttgatactgttgtcatatagt Alignment from CESAR gTTCAAAGCCGTG-TCTGCCAAGAGTAAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG actggcatccagtaagattactctggcattcaggacttccctcctcacaggTTTAGAGCGGTGCTCAGCTAAGAGTAAAGAAGACTTGGTGTCCCAGGGCATCACTGAGTTCACAATTGAAGACTTCCACAACACAgtatgtaagttcaccaatacttaaccagcttgatactgttgtcatatagt Alignment from Spaln_aa2Genome GTTCAAAGCCGTG-TCTGCCAAGAGTAAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG actggcatccagtaagattactctggcattcaggacttccctcctcacagGTTTAGAGCGGTGcTCAGCTAAGAGTAAAGAAGACTTGGTGTCCCAGGGCATCACTGAGTTCACAATTGAAGACTTCCACAACACAgtatgtaagttcaccaatacttaaccagcttgatactgttgtcatatagt Alignment from Spaln_nt2Genome GTTCAAAGCCGTG-TCTGCCAAGAGTAAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG actggcatccagtaagattactctggcattcaggacttccctcctcacagGTTTAGAGCGGTGCTCAGCTAAGAGTAAAGAAGACTTGGTGTCCCAGGGCATCACTGAGTTCACAATTGAAGACTTCCACAACACAgtatgtaagttcaccaatacttaaccagcttgatactgttgtcatatagt Alignment from Pairagon GTTCAAAGCCGTG-TCTGCCAAGAGTAAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG actggcatccagtaagattactctggcattcaggacttccctcctcacagGTTTAGAGCGGTGCTCAGCTAAGAGTAAAGAAGACTTGGTGTCCCAGGGCATCACTGAGTTCACAATTGAAGACTTCCACAACACAgtatgtaagttcaccaatacttaaccagcttgatactgttgtcatatagt Alignment from Exonerate_protein2genome GTTCAAAGCCGTG-TCTGCCAAGAGTAAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG actggcatccagtaagattactctggcattcaggacttccctcctcacagGTTTAGAGCGGTGCTCAGCTAAGAGTAAAGAAGACTTGGTGTCCCAGGGCATCACTGAGTTCACAATTGAAGACTTCCACAACACAgtatgtaagttcaccaatacttaaccagcttgatactgttgtcatatagt Alignment from Exonerate_coding2genome GTTCAAAGCCGTG-TCTGCCAAGAGTAAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG actggcatccagtaagattactctggcattcaggacttccctcctcacagGTTTAGAGCGGTGCTCAGCTAAGAGTAAAGAAGACTTGGTGTCCCAGGGCATCACTGAGTTCACAATTGAAGACTTCCACAACACAgtatgtaagttcaccaatacttaaccagcttgatactgttgtcatatagt Alignment from GeneWise ----------------CGGTTCAAAGCCGTGTCTGCCAAGAGTAAAGAGGACCTGGTATCCCAGGGCTTCACTGAATTCACAATTGAAGACTTCCACAACACG actggcatccagtaagattactctggcattcagGACTTCCCTCCTCACAGGTTTAGAGCGGTGCTCAGCTAAGAGTAAAGAAGACTTGGTGTCCCAGGGCATCACTGAGTTCACAATTGAAGACTTCCACAACACAgtatgtaagttcaccaatacttaaccagcttgatactgttgtcatatagt #### Pacs1_ID885_9 --> 0 - 2 Original Alignment GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAA-CTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCaa ccaagtattgctggtgaggacctatagtttggatctctttcttggaacagGTGGGTTTTGGGTTAGAACACGTGTCCCGGGAGCAAATTCGAGAAGTGGAGGAGGACTTAGATGAACCTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACCCCGAAGCCCAAACTCaagtacatccccaaagccctttccacccaagctccctaatcccgtttggatc Alignment from CESAR GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAA-CTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCaa ccaagtattgctggtgaggacctatagtttggatctctttcttggaacagGTGGGTTTTGGGTTAGAACACGTGTCCCGGGAGCAAATTCGAGAAGTGGAGGAGGACTTAGATGAACCTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACCCCGAAGCCCAAACTCaagtacatccccaaagccctttccacccaagctccctaatcccgtttggatc Alignment from Spaln_aa2Genome GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAA-CTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ccaagtattgctggtgaggacctatagtttggatctctttcttggaacagGTGGGTTTTGGGTTAGAACACGTGTCCCGGGAGCAAATTCGAGAAGTGGAGGAGGACTTAGATGAAcCTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACCCCGAAGCCCAAACTCAAgtacatccccaaagccctttccacccaagctccctaatcccgtttggatc Alignment from Spaln_nt2Genome GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAA-CTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ccaagtattgctggtgaggacctatagtttggatctctttcttggaacagGTGGGTTTTGGGTTAGAACACGTGTCCCGGGAGCAAATTCGAGAAGTGGAGGAGGACTTAGATGAACCTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACCCCGAAGCCCAAACTCAAgtacatccccaaagccctttccacccaagctccctaatcccgtttggatc Alignment from Pairagon GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAA-CTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ccaagtattgctggtgaggacctatagtttggatctctttcttggaacagGTGGGTTTTGGGTTAGAACACGTGTCCCGGGAGCAAATTCGAGAAGTGGAGGAGGACTTAGATGAACCTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACCCCGAAGCCCAAACTCAAgtacatccccaaagccctttccacccaagctccctaatcccgtttggatc Alignment from Exonerate_protein2genome GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAA-CTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ccaagtattgctggtgaggacctatagtttggatctctttcttggaacagGTGGGTTTTGGGTTAGAACACGTGTCCCGGGAGCAAATTCGAGAAGTGGAGGAGGACTTAGATGAACCTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACCCCGAAGCCCAAACTCAAgtacatccccaaagccctttccacccaagctccctaatcccgtttggatc Alignment from Exonerate_coding2genome GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAA-CTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ccaagtattgctggtgaggacctatagtttggatctctttcttggaacagGTGGGTTTTGGGTTAGAACACGTGTCCCGGGAGCAAATTCGAGAAGTGGAGGAGGACTTAGATGAACCTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACCCCGAAGCCCAAACTCAAgtacatccccaaagccctttccacccaagctccctaatcccgtttggatc Alignment from GeneWise GTGGGCTTTGGGCTAGAACACGTGTCCCGGGAGCAGATTCGGGAAGTGGAGGAGGACTTGGATGAA-CTGTACGACAGTCTAGAGATGTACAACCCCAGCGACAGTGGCCCTGAGATGGAGGAAACAGAAAGCATCCTCAGCACCCCAAAGCCCAAGCTCAA ccaagtattgctggtgaggacctatagtttggatctctttcttggaacagGTGGGTTTTGGGTTAGAACACGTGTCCCGGGAGCAAATTCGAGAAGTGGAGGAGGACTTAGATGAACCTGTATGACAGTCTTGAGATGTACAACCCCAGTGACAGTGGTCCTGAGATGGAGGAAACAGAAAGCATTCTCAGCACCCCGAAGCCCAAACTCAAgtacatccccaaagccctttccacccaagctccctaatcccgtttggatc #### Patl1_ID3327_12 --> 2 - 0 Original Alignment tgCAGTTTGAGGGCTCGTTGGGGAAGCTTACTGTCTCTAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTT-GTGACATCTCGAAGTGAGGATGAT atggtcttagtccaaaaggctagaaactgcttgatcttctctcccaacagtgCAGTTTGATGGCTCATTGGGGAAACTTACTGTCTCCAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTTCGTGACATCTAGAAGCGAGGATGATgtgagtttgagggcagtgtttactggcagtgaccattggaaaatccatct Alignment from CESAR tgCAGTTTGAGGGCTCGTTGGGGAAGCTTACTGTCTCTAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTT-GTGACATCTCGAAGTGAGGATGAT atggtcttagtccaaaaggctagaaactgcttgatcttctctcccaacagtgCAGTTTGATGGCTCATTGGGGAAACTTACTGTCTCCAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTTCGTGACATCTAGAAGCGAGGATGATgtgagtttgagggcagtgtttactggcagtgaccattggaaaatccatct Alignment from Spaln_aa2Genome TGCAGTTTGAGGGCTCGTTGGGGAAGCTTACTGTCTCTAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTT-GTGACATCTCGAAGTGAGGATGAT atggtcttagtccaaaaggctagaaactgcttgatcttctctcccaacagTGCAGTTTGATGGCTCATTGGGGAAACTTACTGTCTCCAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTTcGTGACATCTAGAAGCGAGGATGATgtgagtttgagggcagtgtttactggcagtgaccattggaaaatccatct Alignment from Spaln_nt2Genome TGCAGTTTGAGGGCTCGTTGGGGAAGCTTACTGTCTCTAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTT-GTGACATCTCGAAGTGAGGATGAT atggtcttagtccaaaaggctagaaactgcttgatcttctctcccaacagTGCAGTTTGATGGCTCATTGGGGAAACTTACTGTCTCCAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTTCGTGACATCTAGAAGCGAGGATGATgtgagtttgagggcagtgtttactggcagtgaccattggaaaatccatct Alignment from Pairagon TGCAGTTTGAGGGCTCGTTGGGGAAGCTTACTGTCTCTAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTT-GTGACATCTCGAAGTGAGGATGAT atggtcttagtccaaaaggctagaaactgcttgatcttctctcccaacagTGCAGTTTGATGGCTCATTGGGGAAACTTACTGTCTCCAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTTCGTGACATCTAGAAGCGAGGATGATgtgagtttgagggcagtgtttactggcagtgaccattggaaaatccatct Alignment from Exonerate_protein2genome TGCAGTTTGAGGGCTCGTTGGGGAAGCTTACTGTCTCTAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTT-GTGACATCTCGAAGTGAGGATGAT atggtcttagtccaaaaggctagaaactgcttgatcttctctcccaacagTGCAGTTTGATGGCTCATTGGGGAAACTTACTGTCTCCAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTTCGTGACATCTAGAAGCGAGGATGATgtgagtttgagggcagtgtttactggcagtgaccattggaaaatccatct Alignment from Exonerate_coding2genome TGCAGTTTGAGGGCTCGTTGGGGAAGCTTACTGTCTCTAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTT-GTGACATCTCGAAGTGAGGATGAT atggtcttagtccaaaaggctagaaactgcttgatcttctctcccaacagTGCAGTTTGATGGCTCATTGGGGAAACTTACTGTCTCCAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTTCGTGACATCTAGAAGCGAGGATGATgtgagtttgagggcagtgtttactggcagtgaccattggaaaatccatct Alignment from GeneWise TGCAGTTTGAGGGCTCGTTGGGGAAGCTTACTGTCTCTAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTT-GTGACATCTCGAAGTGAGGATGAT atggtcttagtccaaaaggctagaaactgcttgatcttctctcccaacagTGCAGTTTGATGGCTCATTGGGGAAACTTACTGTCTCCAGTGTGAATAATCCTCGGAAGATGATAGATGCTGTTCGTGACATCTAGAAGCGAGGATGATgtgagtttgagggcagtgtttactggcagtgaccattggaaaatccatct #### Patl1_ID3333_18 --> 1 - 2 Original Alignment gACAGAGGTGATG-TTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGca tcggctttccccttttctgttctatttcctcacctcttgcctgtccgtaggACAGAGGTGATGCTTTATGGCAGCCCGAGAACTGGTCCGTATCCTGCAAGTGGCCCTTTCCAATCCAATTTCTATTCCTTCAAATCTAGTGTCATTCTTGTCCCGCTTTGTTGACCGACAGAAACTGAACTTGTTAGAGACCAAACTGcagtgcgttttgtcattcttttcctgctttgttggctgacagaaactgagtt Alignment from CESAR gACAGAGGTGATG-TTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGca tcggctttccccttttctgttctatttcctcacctcttgcctgtccgtaggACAGAGGTGATGCTTTATGGCAGCCCGAGAACTGGTCCGTATCCTGCAAGTGGCCCTTTCCAATCCAATTTCTATTCCTTCAAATCTAGTGTCATTCTTGTCCCGCTTTGTTGACCGACAGAAACTGAACTTGTTAGAGACCAAACTGcagtgcgttttgtcattcttttcctgctttgttggctgacagaaactgagtt Alignment from Spaln_aa2Genome GACAGAGGTGATG-TTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCA tcggctttccccttttctgttctatttcctcacctcttgcctgtccgtagGACAGAGGTGATGcTTTATGGCAGCCCGAGAACTGGTCCGTATCCTGCAAGTGGCCCTTTCCAATCCAATTTCTATTCCTTCAAATCTAGTGTCATTCTTGTCCCGCTTTGTTGACCGACAGAAACTGAACTTGTTAGAGACCAAACTGCAgtgcgttttgtcattcttttcctgctttgttggctgacagaaactgagtt Alignment from Spaln_nt2Genome GACAGAGGTGATG-TTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCA tcggctttccccttttctgttctatttcctcacctcttgcctgtccgtagGACAGAGGTGATGCTTTATGGCAGCCCGAGAACTGGTCCGTATCCTGCAAGTGGCCCTTTCCAATCCAATTTCTATTCCTTCAAATCTAGTGTCATTCTTGTCCCGCTTTGTTGACCGACAGAAACTGAACTTGTTAGAGACCAAACTGCAgtgcgttttgtcattcttttcctgctttgttggctgacagaaactgagtt Alignment from Pairagon GACAGAGGTGATG-TTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCA tcggctttccccttttctgttctatttcctcacctcttgcctgtccgtagGACAGAGGTGATGCTTTATGGCAGCCCGAGAACTGGTCCGTATCCTGCAAGTGGCCCTTTCCAATCCAATTTCTATTCCTTCAAATCTAGTGTCATTCTTGTCCCGCTTTGTTGACCGACAGAAACTGAACTTGTTAGAGACCAAACTGCAgtgcgttttgtcattcttttcctgctttgttggctgacagaaactgagtt Alignment from Exonerate_protein2genome GACAGAGGTGATG-TTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAGCTGGTT tcggctttccccttttctgttctatttcctcacctcttgcctgtccgtagGACAGAGGTGATGCTTTATGGCAGCCCGAGAACTGGTCCGTATCCTGCAAGTGGCCCTTTCCAATCCAATTTCTATTCCTTCAAATCTAGTGTCATTCTTGTCCCGCTTTGTTGACCGACAGAAACTGAACTTGTTAGAGACCAAACTGCAGTGCGTTttgtcattcttttcctgctttgttggctgacagaaactgagtt Alignment from Exonerate_coding2genome GACAGAGGTGATG-TTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAGCTGGTT tcggctttccccttttctgttctatttcctcacctcttgcctgtccgtagGACAGAGGTGATGCTTTATGGCAGCCCGAGAACTGGTCCGTATCCTGCAAGTGGCCCTTTCCAATCCAATTTCTATTCCTTCAAATCTAGTGTCATTCTTGTCCCGCTTTGTTGACCGACAGAAACTGAACTTGTTAGAGACCAAACTGCAGTGCGTTttgtcattcttttcctgctttgttggctgacagaaactgagtt Alignment from GeneWise GACAGAGGTG-ATGTTCATGGCAACCCGAGAACTTCTACGGATCCCCCAAGCTGCCCTGGCCAAACCAATCTCTATCCCTACAAATCTAGTGTCCCTTTTTTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAAACAAAACTGCAGCTGGTTCAGGGGATACGG tcggctttccccttttctgttctatttcctcacctcttgcctgtccgtagGACAGAGGTGATGCTTTATGGCAGCCCGAGAACTGGTCCGTATCCTGCAAGTGGCCCTTTCCAATCCAATTTCTATTCCTTCAAATCTAGTGTCATTCTTGTCCCGCTTTGTTGACCGACAGAAACTGAACTTGTTAGAGACCAAACTGCAGTGCGTTTTGTCATTCTTTtcctgctttgttggctgacagaaactgagtt #### Pcgf6_ID10083_4 --> 1 - 1 Original Alignment gTTGGACCGGCAG-TTACAAGACATAGTATACAAATTAGTGATCAATCTAGAGGAAa aagaagcaatattatgctgaccgtaaattctctggtctactgtatttcaggTTGGACCGGCAGCTTACAAGACATAGTATACAAGTTAGTGATTGTTCTAGAGGAGagtgagtattagttatcacatagctgtgagtccaaaagttttgattccgcc Alignment from CESAR gTTGGACCGGCAG-TTACAAGACATAGTATACAAATTAGTGATCAATCTAGAGGAAa aagaagcaatattatgctgaccgtaaattctctggtctactgtatttcaggTTGGACCGGCAGCTTACAAGACATAGTATACAAGTTAGTGATTGTTCTAGAGGAGagtgagtattagttatcacatagctgtgagtccaaaagttttgattccgcc Alignment from Spaln_aa2Genome GTTGGACCGGCAG-TTACAAGACATAGTATACAAATTAGTGATCAATCTAGAGGAAA aagaagcaatattatgctgaccgtaaattctctggtctactgtatttcagGTTGGACCGGCAGcTTACAAGACATAGTATACAAGTTAGTGATTGTTCTAGAGGAGAgtgagtattagttatcacatagctgtgagtccaaaagttttgattccgcc Alignment from Spaln_nt2Genome GTTGGACCGGCAG-TTACAAGACATAGTATACAAATTAGTGATCAATCTAGAGGAAA aagaagcaatattatgctgaccgtaaattctctggtctactgtatttcagGTTGGACCGGCAGCTTACAAGACATAGTATACAAGTTAGTGATTGTTCTAGAGGAGAgtgagtattagttatcacatagctgtgagtccaaaagttttgattccgcc Alignment from Pairagon GTTGGACCGGCAG-TTACAAGACATAGTATACAAATTAGTGATCAATCTAGAGGAAA aagaagcaatattatgctgaccgtaaattctctggtctactgtatttcagGTTGGACCGGCAGCTTACAAGACATAGTATACAAGTTAGTGATTGTTCTAGAGGAGAgtgagtattagttatcacatagctgtgagtccaaaagttttgattccgcc Alignment from Exonerate_protein2genome GTTGGACCGGCAG-TTACAAGACATAGTATACAAATTAGTGATCAATCTAGAGGAAA aagaagcaatattatgctgaccgtaaattctctggtctactgtatttcagGTTGGACCGGCAGCTTACAAGACATAGTATACAAGTTAGTGATTGTTCTAGAGGAGAgtgagtattagttatcacatagctgtgagtccaaaagttttgattccgcc Alignment from Exonerate_coding2genome GTTGGACCGGCAG-TTACAAGACATAGTATACAAATTAGTGATCAATCTAGAGGAAA aagaagcaatattatgctgaccgtaaattctctggtctactgtatttcagGTTGGACCGGCAGCTTACAAGACATAGTATACAAGTTAGTGATTGTTCTAGAGGAGAgtgagtattagttatcacatagctgtgagtccaaaagttttgattccgcc Alignment from GeneWise GTTGGACCGGCAGTTACAAGACATAGTATACAAATTAGTGATCAATCTAGAGGAAA aagaagcaatattatgctgaccgtaaattctctggtctactgtatttcaggttggaccggcagCTTA------------CAAGACATAGTATACAAGTTAGTGATTGTTCTAGAGGAGAgtgagtattagttatcacatagctgtgagtccaaaagttttgattccgcc #### Pcgf6_ID10084_3 --> 2 - 2 Original Alignment ttTGTAAAAGCTGCATTGTGAGACATTTTTACTAT-AGTAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAag taatatcaaactagacagccataaagtaccaggtatcccttaccctgcagttTGTAAAAGCTGCATTGTGAGACATTTTTACTATCAGCAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAaggtaaggaagtatggacttgaacattagctgtgtttaatttttcttttatt Alignment from CESAR ttTGTAAAAGCTGCATTGTGAGACATTTTTACTAT-AGTAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAag taatatcaaactagacagccataaagtaccaggtatcccttaccctgcagttTGTAAAAGCTGCATTGTGAGACATTTTTACTATCAGCAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAaggtaaggaagtatggacttgaacattagctgtgtttaatttttcttttatt Alignment from Spaln_aa2Genome TTTGTAAAAGCTGCATTGTGAGACATTTTTACTAT-AGTAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAG taatatcaaactagacagccataaagtaccaggtatcccttaccctgcagTTTGTAAAAGCTGCATTGTGAGACATTTTTACTATcAGCAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAGgtaaggaagtatggacttgaacattagctgtgtttaatttttcttttatt Alignment from Spaln_nt2Genome TTTGTAAAAGCTGCATTGTGAGACATTTTTACTAT-AGTAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAG taatatcaaactagacagccataaagtaccaggtatcccttaccctgcagTTTGTAAAAGCTGCATTGTGAGACATTTTTACTATCAGCAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAGgtaaggaagtatggacttgaacattagctgtgtttaatttttcttttatt Alignment from Pairagon TTTGTAAAAGCTGCATTGTGAGACATTTTTACTAT-AGTAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAG taatatcaaactagacagccataaagtaccaggtatcccttaccctgcagTTTGTAAAAGCTGCATTGTGAGACATTTTTACTATCAGCAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAGgtaaggaagtatggacttgaacattagctgtgtttaatttttcttttatt Alignment from Exonerate_protein2genome TTTGTAAAAGCTGCATTGTGAGACATTTTTACTAT-AGTAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAG taatatcaaactagacagccataaagtaccaggtatcccttaccctgcagTTTGTAAAAGCTGCATTGTGAGACATTTTTACTATCAGCAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAGgtaaggaagtatggacttgaacattagctgtgtttaatttttcttttatt Alignment from Exonerate_coding2genome TTTGTAAAAGCTGCATTGTGAGACATTTTTACTAT-AGTAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAG taatatcaaactagacagccataaagtaccaggtatcccttaccctgcagTTTGTAAAAGCTGCATTGTGAGACATTTTTACTATCAGCAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAGgtaaggaagtatggacttgaacattagctgtgtttaatttttcttttatt Alignment from GeneWise TTTGTAAAAGCTGCATTGTGAGACATTTTTACTAT-AGTAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAG taatatcaaactagacagccataaagtaccaggtatcccttaccctgcagTTTGTAAAAGCTGCATTGTGAGACATTTTTACTATCAGCAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAATATAAGgtaaggaagtatggacttgaacattagctgtgtttaatttttcttttatt #### Pcnxl3_ID1159_34 --> 2 - 0 Original Alignment gcAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCT-CGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG ttataggtgagacatcatgctagcggctttctatatacatatatacccaggcAGCAGTGAGCAGCCCCTTCCACCAGGCCCTAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGGGGATGGGCGACCCCCTTCTCTGCTACAGTGGCCCCCCCCTCCGGCTCCCAGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCAGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCAGAAGGGACTGGGAGGAGCTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGAGGTAGCCCCAAGTCTCAGgtaagaaacctgtggataaaggagtctccctggtcacaaggtggatactc Alignment from CESAR gcAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCT-CGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG ttataggtgagacatcatgctagcggctttctatatacatatatacccaggcAGCAGTGAGCAGCCCCTTCCACCAGGCCCTAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGGGGATGGGCGACCCCCTTCTCTGCTACAGTGGCCCCCCCCTCCGGCTCCCAGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCAGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCAGAAGGGACTGGGAGGAGCTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGAGGTAGCCCCAAGTCTCAGgtaagaaacctgtggataaaggagtctccctggtcacaaggtggatactc Alignment from Spaln_aa2Genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCT-CGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG ttataggtgagacatcatgctagcggctttctatatacatatatacccagGCAGCAGTGAGCAGCCCCTTCCACCAGGCCCTAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGGGGATGGGCGACCCCCTTCTCTGCTACAGTGGCCCCCCCCTcCGGCTCCCAGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCAGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCAGAAGGGACTGGGAGGAGCTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGAGGTAGCCCCAAGTCTCAGgtaagaaacctgtggataaaggagtctccctggtcacaaggtggatactc Alignment from Spaln_nt2Genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCT-CCCCCTCGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG ttataggtgagacatcatgctagcggctttctatatacatatatacccagGCAGCAGTGAGCAGCCCCTTCCACCAGGCCCTAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGGGGATGGGCGACCCCCTTCTCTGCTACAGTGGCCCCCCCCTCCGGCTCCCAGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCAGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCAGAAGGGACTGGGAGGAGCTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGAGGTAGCCCCAAGTCTCAGgtaagaaacctgtggataaaggagtctccctggtcacaaggtggatactc Alignment from Pairagon GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCT-CGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG ttataggtgagacatcatgctagcggctttctatatacatatatacccagGCAGCAGTGAGCAGCCCCTTCCACCAGGCCCTAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGGGGATGGGCGACCCCCTTCTCTGCTACAGTGGCCCCCCCCTCCGGCTCCCAGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCAGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCAGAAGGGACTGGGAGGAGCTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGAGGTAGCCCCAAGTCTCAGgtaagaaacctgtggataaaggagtctccctggtcacaaggtggatactc Alignment from Exonerate_protein2genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCT-CGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG ttataggtgagacatcatgctagcggctttctatatacatatatacccagGCAGCAGTGAGCAGCCCCTTCCACCAGGCCCTAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGGGGATGGGCGACCCCCTTCTCTGCTACAGTGGCCCCCCCCTCCGGCTCCCAGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCAGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCAGAAGGGACTGGGAGGAGCTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGAGGTAGCCCCAAGTCTCAGgtaagaaacctgtggataaaggagtctccctggtcacaaggtggatactc Alignment from Exonerate_coding2genome GCAGCAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCT-CGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG ttataggtgagacatcatgctagcggctttctatatacatatatacccagGCAGCAGTGAGCAGCCCCTTCCACCAGGCCCTAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGGGGATGGGCGACCCCCTTCTCTGCTACAGTGGCCCCCCCCTCCGGCTCCCAGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCAGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCAGAAGGGACTGGGAGGAGCTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGAGGTAGCCCCAAGTCTCAGgtaagaaacctgtggataaaggagtctccctggtcacaaggtggatactc Alignment from GeneWise CAGTGAGCAGCCCCTCCCACCAGGTCCTAGCTGGGGACCACGGCCTTCCCTCAGTGGCTCTGGTGATGGGCGGCCCCCTCCTCTGCTGCAGTGGCCTCCCCCT-CGGCTCCCTGGACCACCCCCTGCTTCACCTGCTCCCACTGAGGGTCCCCGGCCCTCAAGACCTTCTGGCCCTGCTCTCCTCAATTCTGAGGGACCCAGTGGGAAGTGGAGTCTGGGGGGTCGGAAGGGACTGGGAGGACCTGATGGGGAGCCAGCCTCAGGGAGCCCCAAAGGAGGCACCCCCAAATCTCAG ttataggtgagacatcatgctagcggctttctatatacatatatacccaggcagCAGTGAGCAGCCCCTTCCACCAGGCCCTAGCTGGGGACCCCGGCCTTCCCTAATTGGCTCTGGGGATGGGCGACCCCCTTCTCTGCTACAGTGGCCCCCCCCTCCGGCTCCCAGGACCACCCCCTGTTTCACCTGCTCCCACTGAGGGACCCCGGCCCTCAAGACTTTCAGGCCCTGCTCTCCTTAATTCAGAGGGACCCAGTGGGAAGTGGAGTTTGGGGGGTCAGAAGGGACTGGGAGGAGCTGATGGGGAGCCTGCTTCAGGGAGCCCAAAAGGAGGTAGCCCCAAGTCTCAGgtaagaaacctgtggataaaggagtctccctggtcacaaggtggatactc #### Pcnxl3_ID1160_33 --> 1 - 1 Original Alignment aCTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAAT-GTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAg taagccacagaatgcattaccatacacctttctcctgtattgctttttagaCTCCACAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATCCTCGATGATGCAGATTGTGGTGGGGGTGGTGGCCTAGCTTCCCTCAGCAACCATCCTCCCTTGGTACATCCTACGCCTGATAATGTGGCAggtgagagcaaggttttagggaaattataggtgagacatcatgctagcggc Alignment from CESAR aCTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAAT-GTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAg taagccacagaatgcattaccatacacctttctcctgtattgctttttagaCTCCACAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATCCTCGATGATGCAGATTGTGGTGGGGGTGGTGGCCTAGCTTCCCTCAGCAACCATCCTCCCTTGGTACATCCTACGCCTGATAATGTGGCAggtgagagcaaggttttagggaaattataggtgagacatcatgctagcggc Alignment from Spaln_aa2Genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAAT-GTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG taagccacagaatgcattaccatacacctttctcctgtattgctttttagACTCCACAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATcCTCGATGATGCAGATTGTGGTGGGGGTGGTGGCCTAGCTTCCCTCAGCAACCATCCTCCCTTGGTACATCCTACGCCTGATAATGTGGCAGgtgagagcaaggttttagggaaattataggtgagacatcatgctagcggc Alignment from Spaln_nt2Genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAATG-TGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG taagccacagaatgcattaccatacacctttctcctgtattgctttttagACTCCACAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATCCTCGATGATGCAGATTGTGGTGGGGGTGGTGGCCTAGCTTCCCTCAGCAACCATCCTCCCTTGGTACATCCTACGCCTGATAATGTGGCAGgtgagagcaaggttttagggaaattataggtgagacatcatgctagcggc Alignment from Pairagon ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAAT-GTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG taagccacagaatgcattaccatacacctttctcctgtattgctttttagACTCCACAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATCCTCGATGATGCAGATTGTGGTGGGGGTGGTGGCCTAGCTTCCCTCAGCAACCATCCTCCCTTGGTACATCCTACGCCTGATAATGTGGCAGgtgagagcaaggttttagggaaattataggtgagacatcatgctagcggc Alignment from Exonerate_protein2genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAAT-GTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG taagccacagaatgcattaccatacacctttctcctgtattgctttttagACTCCACAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATCCTCGATGATGCAGATTGTGGTGGGGGTGGTGGCCTAGCTTCCCTCAGCAACCATCCTCCCTTGGTACATCCTACGCCTGATAATGTGGCAGgtgagagcaaggttttagggaaattataggtgagacatcatgctagcggc Alignment from Exonerate_coding2genome ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAAT-GTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG taagccacagaatgcattaccatacacctttctcctgtattgctttttagACTCCACAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATCCTCGATGATGCAGATTGTGGTGGGGGTGGTGGCCTAGCTTCCCTCAGCAACCATCCTCCCTTGGTACATCCTACGCCTGATAATGTGGCAGgtgagagcaaggttttagggaaattataggtgagacatcatgctagcggc Alignment from GeneWise ACTTCATAAGGGCTGTGGCGCTGGCTGTAATAGCGGAGGGAAT-GTGGATGACTCGGACTGTGGTGGGGGTGGCGGCCTGACCTCCCTCAGCAATCATCCGCCCTTGGCACACCCTACGCCTGAAAATGCAGCAG taagccacagaatgcattaccatacacctttctcctgtattgctttttagACTCCACAAGGGCTGTGGTGCTGGCTGTAATAGTGGAGGCAATCCTCGATGATGCAGATTGTGGTGGGGGTGGTGGCCTAGCTTCCCTCAGCAACCATCCTCCCTTGGTACATCCTACGCCTGATAATGTGGCAGgtgagagcaaggttttagggaaattataggtgagacatcatgctagcggc #### Pcnxl3_ID1163_30 --> 1 - 0 Original Alignment cCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATG-GATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTT------CACCAG ccttaatgatccttaaaggtggagaagctactgcttgtttctctccacagcCTTGAGCCCTTCCTCTATGGCCTACGTGCTCTGTTCAAGGGAGATTTCAGGATCACCTCCCCCCGTGATGAGTGGGTCTTTACTGACATGCGATTTATTGCACCAAGTGGTGGCGCCAGGAGTCCGTATGGCCCTAAAGCTTCATCATCATCAGgtatcctataaataaggcagggtaggggtgggtgccttccccttacctca Alignment from CESAR cCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATG-GATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCAC------CAG ccttaatgatccttaaaggtggagaagctactgcttgtttctctccacagcCTTGAGCCCTTCCTCTATGGCCTACGTGCTCTGTTCAAGGGAGATTTCAGGATCACCTCCCCCCGTGATGAGTGGGTCTTTACTGACATGCGATTTATTGCACCAAGTGGTGGCGCCAGGAGTCCGTATGGCCCTAAAGCTTCATCATCATCAGgtatcctataaataaggcagggtaggggtgggtgccttccccttacctca Alignment from Spaln_aa2Genome CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATG-GATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTT------CACCAG ccttaatgatccttaaaggtggagaagctactgcttgtttctctccacagCCTTGAGCCCTTCCTCTATGGCCTACGTGCTCTGTTCAAGGGAGATTTCAGGATCACCTCCCCCCGTGATGAGTGGGTCTTTACTGACATGcGATTTATTGCACCAAGTGGTGGCGCCAGGAGTCCGTATGGCCCTAAAGCTTCATCATCATCAGgtatcctataaataaggcagggtaggggtgggtgccttccccttacctca Alignment from Spaln_nt2Genome CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATG-GATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCACCA------G ccttaatgatccttaaaggtggagaagctactgcttgtttctctccacagCCTTGAGCCCTTCCTCTATGGCCTACGTGCTCTGTTCAAGGGAGATTTCAGGATCACCTCCCCCCGTGATGAGTGGGTCTTTACTGACATGCGATTTATTGCACCAAGTGGTGGCGCCAGGAGTCCGTATGGCCCTAAAGCTTCATCATCATCAGgtatcctataaataaggcagggtaggggtgggtgccttccccttacctca Alignment from Pairagon CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATG-GATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCA------------------------------------------------------------ ccttaatgatccttaaaggtggagaagctactgcttgtttctctccacagCCTTGAGCCCTTCCTCTATGGCCTACGTGCTCTGTTCAAGGGAGATTTCAGGATCACCTCCCCCCGTGATGAGTGGGTCTTTACTGACATGCGATTTATTGCACCAAGTGGTGGCGCCAGGAGTCCGTATGGCCCTAAAGCTTCATCATCATCAGGTATCCTATAAATAAGGCAGGGTAGGGGTGGGTGCCTTCCCCTTACCTCA Alignment from Exonerate_protein2genome CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATG-GATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTT------CACCAG ccttaatgatccttaaaggtggagaagctactgcttgtttctctccacagCCTTGAGCCCTTCCTCTATGGCCTACGTGCTCTGTTCAAGGGAGATTTCAGGATCACCTCCCCCCGTGATGAGTGGGTCTTTACTGACATGCGATTTATTGCACCAAGTGGTGGCGCCAGGAGTCCGTATGGCCCTAAAGCTTCATCATCATCAGgtatcctataaataaggcagggtaggggtgggtgccttccccttacctca Alignment from Exonerate_coding2genome CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGACATG-GATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTT------CACCAG ccttaatgatccttaaaggtggagaagctactgcttgtttctctccacagCCTTGAGCCCTTCCTCTATGGCCTACGTGCTCTGTTCAAGGGAGATTTCAGGATCACCTCCCCCCGTGATGAGTGGGTCTTTACTGACATGCGATTTATTGCACCAAGTGGTGGCGCCAGGAGTCCGTATGGCCCTAAAGCTTCATCATCATCAGgtatcctataaataaggcagggtaggggtgggtgccttccccttacctca Alignment from GeneWise CCTGGAGCCCTTCCTCTATGGCCTGCACGCCCTGTTCAAGGGGGACTTCCGCATCACCTCTCCCCGTGACGAGTGGGTCTTTGCCGAC-ATGGATCTGCTTCACCGAGTGGTAGCCCCTGGGGTTCGCATGGCCCTCAAGCTTCAC------CAG ccttaatgatccttaaaggtggagaagctactgcttgtttctctccacagCCTTGAGCCCTTCCTCTATGGCCTACGTGCTCTGTTCAAGGGAGATTTCAGGATCACCTCCCCCCGTGATGAGTGGGTCTTTACTGACATGCGATTTATTGCACCAAGTGGTGGCGCCAGGAGTCCGTATGGCCCTAAAGCTTCATCATCATCAGgtatcctataaataaggcagggtaggggtgggtgccttccccttacctca #### Pcnxl3_ID1168_25 --> 1 - 1 Original Alignment cACTAAACGTGTG-GACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAg caccttcagactatgggagcagagtggatcttttctggttgcttccttagcACTAAACCTGTACGACCACTCTAACACTCGTCTAGTGACACAACTGGACCGGAACCCAggtagattacagcctgcccaggtcttcatagcaaggcaatgggtttacttg Alignment from CESAR cACTAAACGTGTG-GACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAg caccttcagactatgggagcagagtggatcttttctggttgcttccttagcACTAAACCTGTACGACCACTCTAACACTCGTCTAGTGACACAACTGGACCGGAACCCAggtagattacagcctgcccaggtcttcatagcaaggcaatgggtttacttg Alignment from Spaln_aa2Genome CACTAAACGTGTG-GACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAG caccttcagactatgggagcagagtggatcttttctggttgcttccttagCACTAAACCTGTAcGACCACTCTAACACTCGTCTAGTGACACAACTGGACCGGAACCCAGgtagattacagcctgcccaggtcttcatagcaaggcaatgggtttacttg Alignment from Spaln_nt2Genome CACTAAACGTGTG-GACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAG caccttcagactatgggagcagagtggatcttttctggttgcttccttagCACTAAACCTGTACGACCACTCTAACACTCGTCTAGTGACACAACTGGACCGGAACCCAGgtagattacagcctgcccaggtcttcatagcaaggcaatgggtttacttg Alignment from Pairagon CACTAAACGTGTG-GACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAG caccttcagactatgggagcagagtggatcttttctggttgcttccttagCACTAAACCTGTACGACCACTCTAACACTCGTCTAGTGACACAACTGGACCGGAACCCAGgtagattacagcctgcccaggtcttcatagcaaggcaatgggtttacttg Alignment from Exonerate_protein2genome CACTAAACGTGTG-GACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAG caccttcagactatgggagcagagtggatcttttctggttgcttccttagCACTAAACCTGTACGACCACTCTAACACTCGTCTAGTGACACAACTGGACCGGAACCCAGgtagattacagcctgcccaggtcttcatagcaaggcaatgggtttacttg Alignment from Exonerate_coding2genome CACTAAACGTGTG-GACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAG caccttcagactatgggagcagagtggatcttttctggttgcttccttagCACTAAACCTGTACGACCACTCTAACACTCGTCTAGTGACACAACTGGACCGGAACCCAGgtagattacagcctgcccaggtcttcatagcaaggcaatgggtttacttg Alignment from GeneWise -------------------------AACACTAAACGTGTGGACCATTCTAACACTCGCCTAGTGACACAGCTGGACCGGAACCCAG caccttcagactatgggagcagagTGGATCTTTTCTGGTTGCTTCCTTAGCACTAAACCTGTACGACCACTCTAACACTCGTCTAGTGACACAACTGGACCGGAACCCAGgtagattacagcctgcccaggtcttcatagcaaggcaatgggtttacttg #### Pcnxl3_ID1169_24 --> 2 - 2 Original Alignment acTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGG-CCCCTCAAGTTCTGGGAGAGGGACTACaa ggctacagaggagaggagagggaggcagccttcccttcctgtatcctcagacTCAGCTATGTTGTTCCTTCAAGCCTTGCTTTCAGGTCTTTTCTCTACCCCGCTCAATCCCTTATTGGGCAGTGCAGTATTCATTATGTCCTACACAAGACCCCCTCAAGTTCTGGGAGAGAGACTACaagtatgtcagcgagggggagcactgttgtcccagagagaccttaaaggatt Alignment from CESAR acTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGG-CCCCTCAAGTTCTGGGAGAGGGACTACaa ggctacagaggagaggagagggaggcagccttcccttcctgtatcctcagacTCAGCTATGTTGTTCCTTCAAGCCTTGCTTTCAGGTCTTTTCTCTACCCCGCTCAATCCCTTATTGGGCAGTGCAGTATTCATTATGTCCTACACAAGACCCCCTCAAGTTCTGGGAGAGAGACTACaagtatgtcagcgagggggagcactgttgtcccagagagaccttaaaggatt Alignment from Spaln_aa2Genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCC-CTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagccttcccttcctgtatcctcagACTCAGCTATGTTGTTCCTTCAAGCCTTGCTTTCAGGTCTTTTCTCTACCCCGCTCAATCCCTTATTGGGCAGTGCAGTATTCATTATGTCCTACACAAGACCCcCTCAAGTTCTGGGAGAGAGACTACAAgtatgtcagcgagggggagcactgttgtcccagagagaccttaaaggatt Alignment from Spaln_nt2Genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCC-CTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagccttcccttcctgtatcctcagACTCAGCTATGTTGTTCCTTCAAGCCTTGCTTTCAGGTCTTTTCTCTACCCCGCTCAATCCCTTATTGGGCAGTGCAGTATTCATTATGTCCTACACAAGACCCCCTCAAGTTCTGGGAGAGAGACTACAAgtatgtcagcgagggggagcactgttgtcccagagagaccttaaaggatt Alignment from Pairagon ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGG-CCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagccttcccttcctgtatcctcagACTCAGCTATGTTGTTCCTTCAAGCCTTGCTTTCAGGTCTTTTCTCTACCCCGCTCAATCCCTTATTGGGCAGTGCAGTATTCATTATGTCCTACACAAGACCCCCTCAAGTTCTGGGAGAGAGACTACAAgtatgtcagcgagggggagcactgttgtcccagagagaccttaaaggatt Alignment from Exonerate_protein2genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGG-CCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagccttcccttcctgtatcctcagACTCAGCTATGTTGTTCCTTCAAGCCTTGCTTTCAGGTCTTTTCTCTACCCCGCTCAATCCCTTATTGGGCAGTGCAGTATTCATTATGTCCTACACAAGACCCCCTCAAGTTCTGGGAGAGAGACTACAAgtatgtcagcgagggggagcactgttgtcccagagagaccttaaaggatt Alignment from Exonerate_coding2genome ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGG-CCCCTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagccttcccttcctgtatcctcagACTCAGCTATGTTGTTCCTTCAAGCCTTGCTTTCAGGTCTTTTCTCTACCCCGCTCAATCCCTTATTGGGCAGTGCAGTATTCATTATGTCCTACACAAGACCCCCTCAAGTTCTGGGAGAGAGACTACAAgtatgtcagcgagggggagcactgttgtcccagagagaccttaaaggatt Alignment from GeneWise ACTCAGCTATGCTGTTCCTTCAGGCCCTGCTCTCAGGGCTCTTTTCTACCCCACTCAACCCCCTGCTGGGCAGCGCAGTCTTCATCATGTCCTACGCAAGGCCC-CTCAAGTTCTGGGAGAGGGACTACAA ggctacagaggagaggagagggaggcagccttcccttcctgtatcctcagACTCAGCTATGTTGTTCCTTCAAGCCTTGCTTTCAGGTCTTTTCTCTACCCCGCTCAATCCCTTATTGGGCAGTGCAGTATTCATTATGTCCTACACAAGACCCCCTCAAGTTCTGGGAGAGAGACTACAAgtatgtcagcgagggggagcactgttgtcccagagagaccttaaaggatt #### Pcnxl3_ID1178_15 --> 2 - 1 Original Alignment tgTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTG-CCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAg agggactgagtctgcatgctgtagcccactgctttgcttttgttgcctagtaTTCACCTTATGCTTTCCATTTGTTTTCCTGCTGGGACTCCTGCCCCCAGGTCAACACCTGCCTCACGTACCTCTTGGAACAGATAGATATGCATGGTTTTGGAGGCACAggtaaaatgtgctcagggtggtcttatccaggaaggtcaatcccacacagc Alignment from CESAR tgTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTGCCC-CAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAg agggactgagtctgcatgctgtagcccactgctttgcttttgttgcctagtaTTCACCTTATGCTTTCCATTTGTTTTCCTGCTGGGACTCCTGCCCCCAGGTCAACACCTGCCTCACGTACCTCTTGGAACAGATAGATATGCATGGTTTTGGAGGCACAggtaaaatgtgctcagggtggtcttatccaggaaggtcaatcccacacagc Alignment from Spaln_aa2Genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTG-CCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG agggactgagtctgcatgctgtagcccactgctttgcttttgttgcctagTATTCACCTTATGCTTTCCATTTGTTTTCCTGCTGGGACTCCTGcCCCCAGGTCAACACCTGCCTCACGTACCTCTTGGAACAGATAGATATGCATGGTTTTGGAGGCACAGgtaaaatgtgctcagggtggtcttatccaggaaggtcaatcccacacagc Alignment from Spaln_nt2Genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTG-CCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG agggactgagtctgcatgctgtagcccactgctttgcttttgttgcctagTATTCACCTTATGCTTTCCATTTGTTTTCCTGCTGGGACTCCTGCCCCCAGGTCAACACCTGCCTCACGTACCTCTTGGAACAGATAGATATGCATGGTTTTGGAGGCACAGgtaaaatgtgctcagggtggtcttatccaggaaggtcaatcccacacagc Alignment from Pairagon TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTG-CCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG agggactgagtctgcatgctgtagcccactgctttgcttttgttgcctagTATTCACCTTATGCTTTCCATTTGTTTTCCTGCTGGGACTCCTGCCCCCAGGTCAACACCTGCCTCACGTACCTCTTGGAACAGATAGATATGCATGGTTTTGGAGGCACAGgtaaaatgtgctcagggtggtcttatccaggaaggtcaatcccacacagc Alignment from Exonerate_protein2genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTG-CCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG agggactgagtctgcatgctgtagcccactgctttgcttttgttgcctagTATTCACCTTATGCTTTCCATTTGTTTTCCTGCTGGGACTCCTGCCCCCAGGTCAACACCTGCCTCACGTACCTCTTGGAACAGATAGATATGCATGGTTTTGGAGGCACAGgtaaaatgtgctcagggtggtcttatccaggaaggtcaatcccacacagc Alignment from Exonerate_coding2genome TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTCCTG-CCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG agggactgagtctgcatgctgtagcccactgctttgcttttgttgcctagTATTCACCTTATGCTTTCCATTTGTTTTCCTGCTGGGACTCCTGCCCCCAGGTCAACACCTGCCTCACGTACCTCTTGGAACAGATAGATATGCATGGTTTTGGAGGCACAGgtaaaatgtgctcagggtggtcttatccaggaaggtcaatcccacacagc Alignment from GeneWise TGTTCACCTTATGCTTTCCGTTCGTCTTCCTCCTGGGCCTC-CTGCCCCAGGTCAACACCTGCCTCATGTACCTCCTGGAGCAGATAGACATGCATGGCTTTGGAGGCACAG agggactgagtctgcatgctgtagcccactgctttgcttttgttgcctagTATTCACCTTATGCTTTCCATTTGTTTTCCTGCTGGGACTCCTGCCCCCAGGTCAACACCTGCCTCACGTACCTCTTGGAACAGATAGATATGCATGGTTTTGGAGGCACAGgtaaaatgtgctcagggtggtcttatccaggaaggtcaatcccacacagc #### Pcnxl3_ID1185_8 --> 1 - 1 Original Alignment cAGCCTGCAGGAGGCTCAGCGGGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCC-TCCGCTCTGCACTTTGCCTCTTCCCTGTTGCTCACCCGAGCTGGCCCCAACGTCCATGAAGCCAGCAATTTTGATGACACCTCTGAGGGTGCTGTGCACTATTTCTACGACGAGAGTg tcccagtgcagaaggactgggtctcctagtgcccattcttctcttctcagcAGTCTG---AAAGCCCAGCGTGGCCAGGCTGCTTCTCACTGCAGGGCACTAACTCTGCCCCTCTGCATTACACTTTGCATCTTCCTTGCTGCTCACCCGAGCAGGCCCCAATGTCCATGAAGCAAGCAATTTCCATGATACCTCCGAGGGTGCTGTCCACTATTCTTATGATGAGAGTggtaggaccttcccaagctgaccacttattaggcctgtttgtggtgactgc Alignment from CESAR cAGCCTGCAGGAGGCTCAGCGGGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCC-TCCGCTCTGCACTTTGCCTCTTCCCTGTTGCTCACCCGAGCTGGCCCCAACGTCCATGAAGCCAGCAATTTTGATGACACCTCTGAGGGTGCTGTGCACTATTTCTACGACGAGAGTg tcccagtgcagaaggactgggtctcctagtgcccattcttctcttctcagcAGTCTGAAA---GCCCAGCGTGGCCAGGCTGCTTCTCACTGCAGGGCACTAACTCTGCCCCTCTGCATTACACTTTGCATCTTCCTTGCTGCTCACCCGAGCAGGCCCCAATGTCCATGAAGCAAGCAATTTCCATGATACCTCCGAGGGTGCTGTCCACTATTCTTATGATGAGAGTggtaggaccttcccaagctgaccacttattaggcctgtttgtggtgactgc Alignment from Spaln_aa2Genome CAGCCTGCAGGAGGCTCAGCGGGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTG-CCCTCCGCTCTGCACTTTGCCTCTTCCCTGTTGCTCACCCGAGCTGGCCCCAACGTCCATGAAGCCAGCAATTTTGATGACACCTCTGAGGGTGCTGTGCACTATTTCTACGACGAGAGTG tcccagtgcagaaggactgggtctcctagtgcccattcttctcttctcagCAGTCTGAAA---GCCCAGCGTGGCCAGGCTGCTTCTCACTGCAGGGCACTAACTCTGcCCCTCTGCATTACACTTTGCATCTTCCTTGCTGCTCACCCGAGCAGGCCCCAATGTCCATGAAGCAAGCAATTTCCATGATACCTCCGAGGGTGCTGTCCACTATTCTTATGATGAGAGTGgtaggaccttcccaagctgaccacttattaggcctgtttgtggtgactgc Alignment from Spaln_nt2Genome CAGCCTGCAGGAGGCTCAGCGGGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCC-TCCGCTCTGCACTTTGCCTCTTCCCTGTTGCTCACCCGAGCTGGCCCCAACGTCCATGAAGCCAGCAATTTTGATGACACCTCTGAGGGTGCTGTGCACTATTTCTACGACGAGAGTG tcccagtgcagaaggactgggtctcctagtgcccattcttctcttctcagCAGTCT---GAAAGCCCAGCGTGGCCAGGCTGCTTCTCACTGCAGGGCACTAACTCTGCCCCTCTGCATTACACTTTGCATCTTCCTTGCTGCTCACCCGAGCAGGCCCCAATGTCCATGAAGCAAGCAATTTCCATGATACCTCCGAGGGTGCTGTCCACTATTCTTATGATGAGAGTGgtaggaccttcccaagctgaccacttattaggcctgtttgtggtgactgc Alignment from Pairagon CAGCCTGCAGGAGGCTCAGCGGGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCCTCCGCTCTG-----CACTTTGCCTCTTCCCTGTTGCTCACCCGAGCTGGCCCCAACGTCCATGAAGCCAGCAATTTTGATGACACCTCTGAGGGTGCTGTGCACTATTTCTACGACGAGAGTG tcccagtgcagaaggactgggtctcctagtgcccattcttctcttctcagCAGTCT---GAAAGCCCAGCGTGGCCAGGCTGCTTCTCACTGCAGGGCACTAACTCTGCCC----CTCTGCATTACACTTTGCATCTTCCTTGCTGCTCACCCGAGCAGGCCCCAATGTCCATGAAGCAAGCAATTTCCATGATACCTCCGAGGGTGCTGTCCACTATTCTTATGATGAGAGTGgtaggaccttcccaagctgaccacttattaggcctgtttgtggtgactgc Alignment from Exonerate_protein2genome CAGCCTGCAGGAGGCTCAGCGGGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTG-CCCTCCGCTCTGCACTTTGCCTCTTCCCTGTTGCTCACCCGAGCTGGCCCCAACGTCCATGAAGCCAGCAATTTTGATGACACCTCTGAGGGTGCTGTGCACTATTTCTACGACGAGAGTG tcccagtgcagaaggactgggtctcctagtgcccattcttctcttctcagCAGTCTG---AAAGCCCAGCGTGGCCAGGCTGCTTCTCACTGCAGGGCACTAACTCTGCCCCTCTGCATTACACTTTGCATCTTCCTTGCTGCTCACCCGAGCAGGCCCCAATGTCCATGAAGCAAGCAATTTCCATGATACCTCCGAGGGTGCTGTCCACTATTCTTATGATGAGAGTGgtaggaccttcccaagctgaccacttattaggcctgtttgtggtgactgc Alignment from Exonerate_coding2genome CAGCCTGCAGGAGGCTCAGCGGGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTG-CCCTCCGCTCTGCACTTTGCCTCTTCCCTGTTGCTCACCCGAGCTGGCCCCAACGTCCATGAAGCCAGCAATTTTGATGACACCTCTGAGGGTGCTGTGCACTATTTCTACGACGAGAGTG tcccagtgcagaaggactgggtctcctagtgcccattcttctcttctcagCAGTCTG---AAAGCCCAGCGTGGCCAGGCTGCTTCTCACTGCAGGGCACTAACTCTGCCCCTCTGCATTACACTTTGCATCTTCCTTGCTGCTCACCCGAGCAGGCCCCAATGTCCATGAAGCAAGCAATTTCCATGATACCTCCGAGGGTGCTGTCCACTATTCTTATGATGAGAGTGgtaggaccttcccaagctgaccacttattaggcctgtttgtggtgactgc Alignment from GeneWise CAGCCTGCAGGAGGCTCAGCGGGGCCGGGCTGCTTCCCACTCCAGGGCACTGACTCTGCCC-TCCGCTCTGCACTTTGCCTCTTCCCTGTTGCTCACCCGAGCTGGCCCCAACGTCCATGAAGCCAGCAATTTTGATGACACCTCTGAGGGTGCTGTGCACTATTTCTACGACGAGAGTG tcccagtgcagaaggactgggtctcctagtgcccattcttctcttctcagCAGTCTGAAA---GCCCAGCGTGGCCAGGCTGCTTCTCACTGCAGGGCACTAACTCTGCCCCTCTGCATTACACTTTGCATCTTCCTTGCTGCTCACCCGAGCAGGCCCCAATGTCCATGAAGCAAGCAATTTCCATGATACCTCCGAGGGTGCTGTCCACTATTCTTATGATGAGAGTGgtaggaccttcccaagctgaccacttattaggcctgtttgtggtgactgc #### Pcnxl3_ID1189_4 --> 0 - 1 Original Alignment GAGTTGCTGCCCCGG-ATGGAGGATTCTGGGCCCCTCAGAg tgaggctggtgcaaacccattgctctcttgactgtttctgtcttttctagAAGTTGCTACCACGGCATGGAGGATTCTGGACCTCTCAGAggtaagttgcttcagcgcttttggcatgatggtcattgtgtggtgctgaat Alignment from CESAR GAGTTGCTGCCCCGG-ATGGAGGATTCTGGGCCCCTCAGAg tgaggctggtgcaaacccattgctctcttgactgtttctgtcttttctagAAGTTGCTACCACGGCATGGAGGATTCTGGACCTCTCAGAggtaagttgcttcagcgcttttggcatgatggtcattgtgtggtgctgaat Alignment from Spaln_aa2Genome TTCGGAGTTGCTGCCCCGGATGGAGGATTCTGGGCCCCTCAGAG tgaggctggtgcaaacccattgctctcttgactgtttctgtcttttctagAAGT---TGCTACCACGGCATGGAGGATTCTGGACCTCTCAGAGgtaagttgcttcagcgcttttggcatgatggtcattgtgtggtgctgaat Alignment from Spaln_nt2Genome GAGTTGCTGCCCCGG-ATGGAGGATTCTGGGCCCCTCAGAG tgaggctggtgcaaacccattgctctcttgactgtttctgtcttttctagAAGTTGCTACCACGGCATGGAGGATTCTGGACCTCTCAGAGgtaagttgcttcagcgcttttggcatgatggtcattgtgtggtgctgaat Alignment from Pairagon GAGTTGCTGCCCCGG-ATGGAGGATTCTGGGCCCCTCAGAG tgaggctggtgcaaacccattgctctcttgactgtttctgtcttttctagAAGTTGCTACCACGGCATGGAGGATTCTGGACCTCTCAGAGgtaagttgcttcagcgcttttggcatgatggtcattgtgtggtgctgaat Alignment from Exonerate_protein2genome GAGTTGCTGCCCCGG-ATGGAGGATTCTGGGCCCCTCAGAG tgaggctggtgcaaacccattgctctcttgactgtttctgtcttttctagAAGTTGCTACCACGGCATGGAGGATTCTGGACCTCTCAGAGgtaagttgcttcagcgcttttggcatgatggtcattgtgtggtgctgaat Alignment from Exonerate_coding2genome tgaggctggtgcaaacccattgctctcttgactgtttctgtcttttctagaagttgctaccacggcatggaggattctggacctctcagaggtaagttgcttcagcgcttttggcatgatggtcattgtgtggtgctgaat Alignment from GeneWise tgaggctggtgcaaacccattgctctcttgactgtttctgtcttttctagaagttgctaccacggcatggaggattctggacctctcagaggtaagttgcttcagcgcttttggcatgatggtcattgtgtggtgctgaat #### Pcnxl3_ID1190_3 --> 1 - 0 Original Alignment gGACCCTGGTGTGGAGATGACGGTG-TTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG aacatgatggacaagataggaacctaatgactgtggttcctaacccacaggGATCCTGGCATAGAGACTACAGTACTTTCAGAAAGTTAGTTCCTCGCCTCCTGTACACTGCAGTTTCCAGCGTTCTGAAATAGGATTTAACCATGTGTCAgtaaggaggctcctactcttgctggcatcaatgtctgccacgggtgttgg Alignment from CESAR gGACCCTGGTGTGGAGATGACGGTG-TTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG aacatgatggacaagataggaacctaatgactgtggttcctaacccacaggGATCCTGGCATAGAGACTACAGTACTTTCAGAAAGTTAGTTCCTCGCCTCCTGTACACTGCAGTTTCCAGCGTTCTGAAATAGGATTTAACCATGTGTCAgtaaggaggctcctactcttgctggcatcaatgtctgccacgggtgttgg Alignment from Spaln_aa2Genome GGACCCTGGTGTGGAGATGACGGTG-TTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG aacatgatggacaagataggaacctaatgactgtggttcctaacccacagGGATCCTGGCATAGAGACTACAGTAcTTTCAGAAAGTTAGTTCCTCGCCTCCTGTACACTGCAGTTTCCAGCGTTCTGAAATAGGATTTAACCATGTGTCAgtaaggaggctcctactcttgctggcatcaatgtctgccacgggtgttgg Alignment from Spaln_nt2Genome GGACCCTGGTGTGGAGATGACGGTG-TTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG aacatgatggacaagataggaacctaatgactgtggttcctaacccacagGGATCCTGGCATAGAGACTACAGTACTTTCAGAAAGTTAGTTCCTCGCCTCCTGTACACTGCAGTTTCCAGCGTTCTGAAATAGGATTTAACCATGTGTCAgtaaggaggctcctactcttgctggcatcaatgtctgccacgggtgttgg Alignment from Pairagon GGACCCTGGTGTGGAGATGACGGTG-TTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG aacatgatggacaagataggaacctaatgactgtggttcctaacccacagGGATCCTGGCATAGAGACTACAGTACTTTCAGAAAGTTAGTTCCTCGCCTCCTGTACACTGCAGTTTCCAGCGTTCTGAAATAGGATTTAACCATGTGTCAgtaaggaggctcctactcttgctggcatcaatgtctgccacgggtgttgg Alignment from Exonerate_protein2genome GGACCCTGGTGTGGAGATGACGGTG-TTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG aacatgatggacaagataggaacctaatgactgtggttcctaacccacagGGATCCTGGCATAGAGACTACAGTACTTTCAGAAAGTTAGTTCCTCGCCTCCTGTACACTGCAGTTTCCAGCGTTCTGAAATAGGATTTAACCATGTGTCAgtaaggaggctcctactcttgctggcatcaatgtctgccacgggtgttgg Alignment from Exonerate_coding2genome aacatgatggacaagataggaacctaatgactgtggttcctaacccacagggatcctggcatagagactacagtactttcagaaagttagttcctcgcctcctgtacactgcagtttccagcgttctgaaataggatttaaccatgtgtcagtaaggaggctcctactcttgctggcatcaatgtctgccacgggtgttgg Alignment from GeneWise GGACCCTGGTGTGGAGATGACG-GTGTTCCGGAAGGTGAGCTCCACGCCCCCTGTACGCTGCAGTTCCCAGCATTCTGTGTTTGGCTTCAACCAGGTTTCG aacatgatggacaagataggaacctaatgactgtggttcctaacccacagGGATCCTGGCATAGAGACTACAGTACTTTCAGAAAGTTAGTTCCTCGCCTCCTGTACACTGCAGTTTCCAGCGTTCTGAAATAGGATTTAACCATGTGTCAgtaaggaggctcctactcttgctggcatcaatgtctgccacgggtgttgg #### Pcx_ID553_3 --> 2 - 0 Original Alignment gtGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTG-CAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcatgttcaggaagggctctgagggctgctctgttcctaggtGAGATTGCAATCCGAGTCTTTCGTGCATGCAGGGAACTGGGCATCCGCACAGTGGCTGTGTATTCGGAGCAGGACACAGGGCTAATGCATAGGCAGAAAGCAGATGAGGGTTACCTTCTTGGTCGTGGCCTGGCACCTGTCCCAAGCCTATCTGCACATTCCAGACATCATCAGGGTTGCCAAGgtatgaatgccagggtttctgccgacttggtagaactctgcatgtcttat Alignment from CESAR gtGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTG-CAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcatgttcaggaagggctctgagggctgctctgttcctaggtGAGATTGCAATCCGAGTCTTTCGTGCATGCAGGGAACTGGGCATCCGCACAGTGGCTGTGTATTCGGAGCAGGACACAGGGCTAATGCATAGGCAGAAAGCAGATGAGGGTTACCTTCTTGGTCGTGGCCTGGCACCTGTCCCAAGCCTATCTGCACATTCCAGACATCATCAGGGTTGCCAAGgtatgaatgccagggtttctgccgacttggtagaactctgcatgtcttat Alignment from Spaln_aa2Genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTG-CAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcatgttcaggaagggctctgagggctgctctgttcctagGTGAGATTGCAATCCGAGTCTTTCGTGCATGCAGGGAACTGGGCATCCGCACAGTGGCTGTGTATTCGGAGCAGGACACAGGGCTAATGCATAGGCAGAAAGCAGATGAGGGTTACCTTCTTGGTCGTGGCCTGGCACCTGTCcCAAGCCTATCTGCACATTCCAGACATCATCAGGGTTGCCAAGgtatgaatgccagggtttctgccgacttggtagaactctgcatgtcttat Alignment from Spaln_nt2Genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTGC-AGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcatgttcaggaagggctctgagggctgctctgttcctagGTGAGATTGCAATCCGAGTCTTTCGTGCATGCAGGGAACTGGGCATCCGCACAGTGGCTGTGTATTCGGAGCAGGACACAGGGCTAATGCATAGGCAGAAAGCAGATGAGGGTTACCTTCTTGGTCGTGGCCTGGCACCTGTCCCAAGCCTATCTGCACATTCCAGACATCATCAGGGTTGCCAAGgtatgaatgccagggtttctgccgacttggtagaactctgcatgtcttat Alignment from Pairagon GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGT-GCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcatgttcaggaagggctctgagggctgctctgttcctagGTGAGATTGCAATCCGAGTCTTTCGTGCATGCAGGGAACTGGGCATCCGCACAGTGGCTGTGTATTCGGAGCAGGACACAGGGCTAATGCATAGGCAGAAAGCAGATGAGGGTTACCTTCTTGGTCGTGGCCTGGCACCTGTCCCAAGCCTATCTGCACATTCCAGACATCATCAGGGTTGCCAAGgtatgaatgccagggtttctgccgacttggtagaactctgcatgtcttat Alignment from Exonerate_protein2genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTG-CAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcatgttcaggaagggctctgagggctgctctgttcctagGTGAGATTGCAATCCGAGTCTTTCGTGCATGCAGGGAACTGGGCATCCGCACAGTGGCTGTGTATTCGGAGCAGGACACAGGGCTAATGCATAGGCAGAAAGCAGATGAGGGTTACCTTCTTGGTCGTGGCCTGGCACCTGTCCCAAGCCTATCTGCACATTCCAGACATCATCAGGGTTGCCAAGgtatgaatgccagggtttctgccgacttggtagaactctgcatgtcttat Alignment from Exonerate_coding2genome GTGAGATTGCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCTGTG-CAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcatgttcaggaagggctctgagggctgctctgttcctagGTGAGATTGCAATCCGAGTCTTTCGTGCATGCAGGGAACTGGGCATCCGCACAGTGGCTGTGTATTCGGAGCAGGACACAGGGCTAATGCATAGGCAGAAAGCAGATGAGGGTTACCTTCTTGGTCGTGGCCTGGCACCTGTCCCAAGCCTATCTGCACATTCCAGACATCATCAGGGTTGCCAAGgtatgaatgccagggtttctgccgacttggtagaactctgcatgtcttat Alignment from GeneWise ---GCCATCCGAGTGTTTCGTGCGTGCACAGAGCTGGGTATCCGCACAGTGGCTGTCTACTCGGAGCAGGACACAGGGCAGATGCACAGGCAGAAAGCTGATGAAGCCTACCTTATTGGCCGTGGCCTGGCACCT-GTGCAGGCCTACCTGCACATTCCAGACATCATCAAGGTGGCCAAG tttatctcaggcatgttcaggaagggctctgagggctgctctgttcctaggtgagATTGCAATCCGAGTCTTTCGTGCATGCAGGGAACTGGGCATCCGCACAGTGGCTGTGTATTCGGAGCAGGACACAGGGCTAATGCATAGGCAGAAAGCAGATGAGGGTTACCTTCTTGGTCGTGGCCTGGCACCTGTCCCAAGCCTATCTGCACATTCCAGACATCATCAGGGTTGCCAAGgtatgaatgccagggtttctgccgacttggtagaactctgcatgtcttat #### Pcx_ID555_5 --> 2 - 0 Original Alignment gcGTTCCAGTGGTCCCCGGCACGGACTCCCCC-ATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG cattgaacctggaagtacaggcattctgctcacaagctctccttctacaggtGCTCCGGTGGTTCCTGGAACAGAGTCCCCCCATCAGCTCCTTACATGAAGCGCATGAGTTCTCCAACACCTATGATCCTCCCATTATTTTCAATGCAGCTTATGGAGATGGGGGTCATGATATGAGGGTTGTGCAGAGCTATGAGgtaagaggagcagcatatggtaagctagcagcgactgggccagtccttgg Alignment from CESAR gcGTTCCAGTGGTCCCCGGCACGGACTCC-CCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG cattgaacctggaagtacaggcattctgctcacaagctctccttctacaggtGCTCCGGTGGTTCCTGGAACAGAGTCCCCCCATCAGCTCCTTACATGAAGCGCATGAGTTCTCCAACACCTATGATCCTCCCATTATTTTCAATGCAGCTTATGGAGATGGGGGTCATGATATGAGGGTTGTGCAGAGCTATGAGgtaagaggagcagcatatggtaagctagcagcgactgggccagtccttgg Alignment from Spaln_aa2Genome GCGTTCCAGTGGTCCCCGGCACGGACTCC-CCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG cattgaacctggaagtacaggcattctgctcacaagctctccttctacagGTGCTCCGGTGGTTCCTGGAACAGAGTCCcCCCATCAGCTCCTTACATGAAGCGCATGAGTTCTCCAACACCTATGATCCTCCCATTATTTTCAATGCAGCTTATGGAGATGGGGGTCATGATATGAGGGTTGTGCAGAGCTATGAGgtaagaggagcagcatatggtaagctagcagcgactgggccagtccttgg Alignment from Spaln_nt2Genome GCGTTCCAGTGGTCCCCGGCACGGACTCCCCC-ATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG cattgaacctggaagtacaggcattctgctcacaagctctccttctacagGTGCTCCGGTGGTTCCTGGAACAGAGTCCCCCCATCAGCTCCTTACATGAAGCGCATGAGTTCTCCAACACCTATGATCCTCCCATTATTTTCAATGCAGCTTATGGAGATGGGGGTCATGATATGAGGGTTGTGCAGAGCTATGAGgtaagaggagcagcatatggtaagctagcagcgactgggccagtccttgg Alignment from Pairagon GCGTTCCAGTGGTCCCCGGCACGGACT-CCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG cattgaacctggaagtacaggcattctgctcacaagctctccttctacagGTGCTCCGGTGGTTCCTGGAACAGAGTCCCCCCATCAGCTCCTTACATGAAGCGCATGAGTTCTCCAACACCTATGATCCTCCCATTATTTTCAATGCAGCTTATGGAGATGGGGGTCATGATATGAGGGTTGTGCAGAGCTATGAGgtaagaggagcagcatatggtaagctagcagcgactgggccagtccttgg Alignment from Exonerate_protein2genome GCGTTCCAGTGGTCCCCGGCACGGACTCC-CCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG cattgaacctggaagtacaggcattctgctcacaagctctccttctacagGTGCTCCGGTGGTTCCTGGAACAGAGTCCCCCCATCAGCTCCTTACATGAAGCGCATGAGTTCTCCAACACCTATGATCCTCCCATTATTTTCAATGCAGCTTATGGAGATGGGGGTCATGATATGAGGGTTGTGCAGAGCTATGAGgtaagaggagcagcatatggtaagctagcagcgactgggccagtccttgg Alignment from Exonerate_coding2genome GCGTTCCAGTGGTCCCCGGCACGGACTCC-CCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG cattgaacctggaagtacaggcattctgctcacaagctctccttctacagGTGCTCCGGTGGTTCCTGGAACAGAGTCCCCCCATCAGCTCCTTACATGAAGCGCATGAGTTCTCCAACACCTATGATCCTCCCATTATTTTCAATGCAGCTTATGGAGATGGGGGTCATGATATGAGGGTTGTGCAGAGCTATGAGgtaagaggagcagcatatggtaagctagcagcgactgggccagtccttgg Alignment from GeneWise -----------------------------------------------CCAGTGGTCCCCGGC---------ACGGACTCCCCCATCAGCTCCCTGCACGAGGCGCATGAGTTCTCCAACACCTACGGCTTCCCTATTATCTTCAAGGCCGCCTACGGAGGTGGGGGCCGCGGCATGCGGGTCGTGCATAGCTATGAG CATTGAACCTGGAAGTACAGGCATTCTGCTCACAAGCTCTCCTTCTACAGGTGCTCCGGTGGTTCCTGGAACAGAGTCCCCCCATCAGCTCCTTACATGAAGCGCATGAGTTCTCCAACACCTATGATCCTCCCATTATTTTCAATGCAGCTTATGGAGATGGGGGTCATGATATGAGGGTTGTGCAGAGCTATGAGgtaagaggagcagcatatggtaagctagcagcgactgggccagtccttgg #### Pcx_ID556_6 --> 0 - 1 Original Alignment GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCG-TTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAg cgcattgaaaatgctgacccatggctgctgcctatttctgatctttccagGAGCTAGAGAAGAATTATACCCGAGCCTACTCTGAGGCCTTGGCGGCTTTTGGGAACAGAGCACCTGTTTGTCGAGAAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAggtaggtaaggagctggctgcaactgcccaatacatctgagaccctgccat Alignment from CESAR GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCG-TTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAg cgcattgaaaatgctgacccatggctgctgcctatttctgatctttccagGAGCTAGAGAAGAATTATACCCGAGCCTACTCTGAGGCCTTGGCGGCTTTTGGGAACAGAGCACCTGTTTGTCGAGAAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAggtaggtaaggagctggctgcaactgcccaatacatctgagaccctgccat Alignment from Spaln_aa2Genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCG-TTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG cgcattgaaaatgctgacccatggctgctgcctatttctgatctttccagGAGCTAGAGAAGAATTATACCCGAGCCTACTCTGAGGCCTTGGCGGCTTTTGGGAACAGAGCAcCTGTTTGTCGAGAAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAGgtaggtaaggagctggctgcaactgcccaatacatctgagaccctgccat Alignment from Spaln_nt2Genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCGT-TGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG cgcattgaaaatgctgacccatggctgctgcctatttctgatctttccagGAGCTAGAGAAGAATTATACCCGAGCCTACTCTGAGGCCTTGGCGGCTTTTGGGAACAGAGCACCTGTTTGTCGAGAAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAGgtaggtaaggagctggctgcaactgcccaatacatctgagaccctgccat Alignment from Pairagon GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCG-TTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG cgcattgaaaatgctgacccatggctgctgcctatttctgatctttccagGAGCTAGAGAAGAATTATACCCGAGCCTACTCTGAGGCCTTGGCGGCTTTTGGGAACAGAGCACCTGTTTGTCGAGAAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAGgtaggtaaggagctggctgcaactgcccaatacatctgagaccctgccat Alignment from Exonerate_protein2genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCG-TTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG cgcattgaaaatgctgacccatggctgctgcctatttctgatctttccagGAGCTAGAGAAGAATTATACCCGAGCCTACTCTGAGGCCTTGGCGGCTTTTGGGAACAGAGCACCTGTTTGTCGAGAAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAGgtaggtaaggagctggctgcaactgcccaatacatctgagaccctgccat Alignment from Exonerate_coding2genome GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAATGGAGCG-TTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG cgcattgaaaatgctgacccatggctgctgcctatttctgatctttccagGAGCTAGAGAAGAATTATACCCGAGCCTACTCTGAGGCCTTGGCGGCTTTTGGGAACAGAGCACCTGTTTGTCGAGAAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAGgtaggtaaggagctggctgcaactgcccaatacatctgagaccctgccat Alignment from GeneWise GAGTTGGAAGAGAATTACACCCGGGCCTACTCCGAGGCCTTGGCAGCCTTTGGGAAT-GGAGCGTTGTTTGTGGAGAAGTTCATTGAGAAGCCAAGGCACATTGAGGTGCAGATCCTAG cgcattgaaaatgctgacccatggctgctgcctatttctgatctttccagGAGCTAGAGAAGAATTATACCCGAGCCTACTCTGAGGCCTTGGCGGCTTTTGGGAACAGAGCACCTGTTTGTCGAGAAGTTTATTGGACAGCCAAGCCATTTTGAGGTGCAGATCCTAGgtaggtaaggagctggctgcaactgcccaatacatctgagaccctgccat #### Pcx_ID565_14 --> 1 - 0 Original Alignment gTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGC-ACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aatgaatcataggagtcagaaatgtatcgtcccatggtctcttctgtcaggTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGTGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGGGTATGAAATCAGCAGGCAGTGCTGGGGCTGTAGTTGAGGCTGCCATCTCCTACACTGGGGAAGTGGCTGACCCTGGTCGCCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATATTGTGTATTAAGgtaagagggctattcagtgtgtctctctcttttgatcataactgatagaa Alignment from CESAR gTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGC-ACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aatgaatcataggagtcagaaatgtatcgtcccatggtctcttctgtcaggTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGTGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGGGTATGAAATCAGCAGGCAGTGCTGGGGCTGTAGTTGAGGCTGCCATCTCCTACACTGGGGAAGTGGCTGACCCTGGTCGCCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATATTGTGTATTAAGgtaagagggctattcagtgtgtctctctcttttgatcataactatctgtg Alignment from Spaln_aa2Genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGC-ACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aatgaatcataggagtcagaaatgtatcgtcccatggtctcttctgtcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGTGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGGGTATGAAATCAGCAGGCAGTGCTGGGGCTGTAGTTGAGGCTGCCATCTCCTACACTGGGGAAGTGGCTGACCCTGGTCGCcACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATATTGTGTATTAAGgtaagagggctattcagtgtgtctctctcttttgatcataactgatagaa Alignment from Spaln_nt2Genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCG-CACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aatgaatcataggagtcagaaatgtatcgtcccatggtctcttctgtcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGTGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGGGTATGAAATCAGCAGGCAGTGCTGGGGCTGTAGTTGAGGCTGCCATCTCCTACACTGGGGAAGTGGCTGACCCTGGTCGCCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATATTGTGTATTAAGgtaagagggctattcagtgtgtctctctcttttgatcataactgatagaa Alignment from Pairagon GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCG-CACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aatgaatcataggagtcagaaatgtatcgtcccatggtctcttctgtcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGTGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGGGTATGAAATCAGCAGGCAGTGCTGGGGCTGTAGTTGAGGCTGCCATCTCCTACACTGGGGAAGTGGCTGACCCTGGTCGCCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATATTGTGTATTAAGgtaagagggctattcagtgtgtctctctcttttgatcataactgatagaa Alignment from Exonerate_protein2genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGC-ACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aatgaatcataggagtcagaaatgtatcgtcccatggtctcttctgtcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGTGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGGGTATGAAATCAGCAGGCAGTGCTGGGGCTGTAGTTGAGGCTGCCATCTCCTACACTGGGGAAGTGGCTGACCCTGGTCGCCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATATTGTGTATTAAGgtaagagggctattcagtgtgtctctctcttttgatcataactgatagaa Alignment from Exonerate_coding2genome GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGC-ACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aatgaatcataggagtcagaaatgtatcgtcccatggtctcttctgtcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGTGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGGGTATGAAATCAGCAGGCAGTGCTGGGGCTGTAGTTGAGGCTGCCATCTCCTACACTGGGGAAGTGGCTGACCCTGGTCGCCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATATTGTGTATTAAGgtaagagggctattcagtgtgtctctctcttttgatcataactgatagaa Alignment from GeneWise GTTCTGTGAGGTGGCCAAAGAGAATGGTATGGACGTCTTCCGAGTCTTTGACTCCCTCAACTACTTGCCAAACATGCTGCTGGGCATGGAAGCAGCAGGCAGTGCTGGGGGTGTGGTGGAGGCTGCCATCTCATACACGGGGGACGTGGCTGACCCTAGTCGC-ACTAAATACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGCACTCACATCCTGTGCATTAAG aatgaatcataggagtcagaaatgtatcgtcccatggtctcttctgtcagGTTCTGTGAGGTGGCCAAAGAGAATGACATGGATGTCTTCCGTGTCTTTGACTCCCTCAACTATTTACCAAACATGCTGCTGGGTATGAAATCAGCAGGCAGTGCTGGGGCTGTAGTTGAGGCTGCCATCTCCTACACTGGGGAAGTGGCTGACCCTGGTCGCCACCAACTACTCACTGGAGTACTACATGGGCTTAGCTGAAGAACTGGTGCGAGCTGGATCTCACATATTGTGTATTAAGgtaagagggctattcagtgtgtctctctcttttgatcataactgatagaa #### Pcx_ID566_15 --> 0 - 1 Original Alignment GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGG-ATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAg agtgtgtctctctcttttgatcataactatctgtggatgtgtgtttgcagGGCATAGCAGGCCTGCTGAAGCCGGCAGCCTGTACAATGCTAGTCAGTTCCCTGTGGGACCGCTCACCTGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGAGCAGGTGTCGCAGCCACACTGGCTTGTGCACAGGCAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCCGGTCATGACCTCACAGCCAAGTATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAAACAggtattgcaagagattgacttatagttgaatgacagatagcactgcaatga Alignment from CESAR GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGG-ATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAg agtgtgtctctctcttttgatcataactatctgtggatgtgtgtttgcagGGCATAGCAGGCCTGCTGAAGCCGGCAGCCTGTACAATGCTAGTCAGTTCCCTGTGGGACCGCTCACCTGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGAGCAGGTGTCGCAGCCACACTGGCTTGTGCACAGGCAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCCGGTCATGACCTCACAGCCAAGTATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAAACAggtattgcaagagattgacttatagttgaatgacagatagcactgcaatga Alignment from Spaln_aa2Genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGG-ATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG agtgtgtctctctcttttgatcataactatctgtggatgtgtgtttgcagGGCATAGCAGGCCTGCTGAAGCCGGCAGCCTGTACAATGCTAGTCAGTTCCCTGTGGGACCGCTCACCTGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGAGCAGGTGTCGCAGCCACACTGGCTTGTGCACAGGCAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCCGGTcATGACCTCACAGCCAAGTATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAAACAGgtattgcaagagattgacttatagttgaatgacagatagcactgcaatga Alignment from Spaln_nt2Genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTGG---CAGTAGACTCCATGTCTGGG-ATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG agtgtgtctctctcttttgatcataactatctgtggatgtgtgtttgcagGGCATAGCAGGCCTGCTGAAGCCGGCAGCCTGTACAATGCTAGTCAGTTCCCTGTGGGACCGCTCACCTGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGAGCAGGTGTCGCAGCCACACTGGCTTGTGCACAGGCAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCCGGTCATGACCTCACAGCCAAGTATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAAACAGgtattgcaagagattgacttatagttgaatgacagatagcactgcaatga Alignment from Pairagon GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGG-GATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG agtgtgtctctctcttttgatcataactatctgtggatgtgtgtttgcagGGCATAGCAGGCCTGCTGAAGCCGGCAGCCTGTACAATGCTAGTCAGTTCCCTGTGGGACCGCTCACCTGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGAGCAGGTGTCGCAGCCACACTGGCTTGTGCACAGGCAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCCGGTCATGACCTCACAGCCAAGTATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAAACAGgtattgcaagagattgacttatagttgaatgacagatagcactgcaatga Alignment from Exonerate_protein2genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGG-ATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG agtgtgtctctctcttttgatcataactatctgtggatgtgtgtttgcagGGCATAGCAGGCCTGCTGAAGCCGGCAGCCTGTACAATGCTAGTCAGTTCCCTGTGGGACCGCTCACCTGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGAGCAGGTGTCGCAGCCACACTGGCTTGTGCACAGGCAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCCGGTCATGACCTCACAGCCAAGTATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAAACAGgtattgcaagagattgacttatagttgaatgacagatagcactgcaatga Alignment from Exonerate_coding2genome GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGAC---GTGGCAGTAGACTCCATGTCTGGG-ATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG agtgtgtctctctcttttgatcataactatctgtggatgtgtgtttgcagGGCATAGCAGGCCTGCTGAAGCCGGCAGCCTGTACAATGCTAGTCAGTTCCCTGTGGGACCGCTCACCTGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGAGCAGGTGTCGCAGCCACACTGGCTTGTGCACAGGCAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCCGGTCATGACCTCACAGCCAAGTATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAAACAGgtattgcaagagattgacttatagttgaatgacagatagcactgcaatga Alignment from GeneWise GACATGGCGGGCCTGCTGAAGCCTGCCGCCTGCACCATGCTGGTCAGCTCCCTCCGGGACCGATTCCCCGACCTCCCACTGCACATCCATACCCATGATACATCAGGGGCAGGTGTGGCAGCCATGCTGGCCTGTGCACAAGCAGGGGCTGATGTTGTGGACGTG---GCAGTAGACTCCATGTCTGGG-ATGACCTCACAGCCAAGCATGGGGGCCCTGGTGGCCTGTACCAAAGGGACTCCTTTGGACACAG agtgtgtctctctcttttgatcataactatctgtggatgtgtgtttgcagGGCATAGCAGGCCTGCTGAAGCCGGCAGCCTGTACAATGCTAGTCAGTTCCCTGTGGGACCGCTCACCTGACCTCCCTCTTCACATCCATACCCATGATACTTTAGGAGCAGGTGTCGCAGCCACACTGGCTTGTGCACAGGCAGGGGCTGATCTTGTAGAAGTGGTTGCAGTAGATGCCATGTCCGGTCATGACCTCACAGCCAAGTATGGGGGCCTTGGTGGCCTGCACCAAAGGGACTCCTTCTGAAACAGgtattgcaagagattgacttatagttgaatgacagatagcactgcaatga #### Pcx_ID567_16 --> 2 - 0 Original Alignment agGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGC-TCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG atactatttttgtacaaccaactccacttcttcacctctttgccgtctagcaTTACCCCTGGAGCGTGTATTTGACTATAGTGGGTACTGGGAAGGTTCTAGGGGATTGTAT------TTTGATTGCATGGCCACCATGAAATCCGGTAACTTGGATCTATACAAAAATGAGATTCCAGGGGGACAGTACACCAATCTGCATTTCCCAGCCCGT------AGACTTGGTCTCAAAGTTCAAGGCAGTTAAGAAAGCTTATGTGGAGGCTAACCAAATGCTGGGGGACCTCATCGAAgtactttggaatgccaggtgtttggcaattatctatggtggttgcctgac Alignment from CESAR agGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG atactatttttgtacaaccaactccacttcttcacctctttgccgtctagcaTTACCCCTGGAGCGTGTATTTGACTATAGTGGGTACTGGGAAGGTTCTAGGGGATTGTAT------TTTGATTGCATGGCCACCATGAAATCCGGTAACTTGGATCTATACAAAAATGAGATTCCAGGGGGACAGTACACCAATCTGCATTTCCCAGCCCGTAGACTTGGTC-----TCAAAGTTCAAGGCAGTTAAGAAAGCTTATGTGGAGGCTAACCAAATGCTGGGGGACCTCATCGAAgtactttggaatgccaggtgtttggcaattatctatggtggttgcctgac Alignment from Spaln_aa2Genome AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG atactatttttgtacaaccaactccacttcttcacctctttgccgtctagCATTACCCCTGGAGCGTGTATTTGACTATAGTGGGTACTGGGAAGGTTCTAGGGGATTGTAT------TTTGATTGCATGGCCACCATGAAATCCGGTAACTTGGATCTATACAAAAATGAGATTCCAGGGGGACAGTACACCAATCTGCATTTCCCAGCCCGTAGACTTGGTCTCA-----AAGTTCAAGGCAGTTAAGAAAGCTTATGTGGAGGCTAACCAAATGCTGGGGGACCTCATCGAAgtactttggaatgccaggtgtttggcaattatctatggtggttgcctgac Alignment from Spaln_nt2Genome AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGG-CTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG atactatttttgtacaaccaactccacttcttcacctctttgccgtctagCATTACCCCTGGAGCGTGTATTTGACTATAGTGGGTACTGGGAAGGTTCTAGGGGATTGTA------TTTTGATTGCATGGCCACCATGAAATCCGGTAACTTGGATCTATACAAAAATGAGATTCCAGGGGGACAGTACACCAATCTGCATTTCCCAGCCCGTA------GACTTGGTCTCAAAGTTCAAGGCAGTTAAGAAAGCTTATGTGGAGGCTAACCAAATGCTGGGGGACCTCATCGAAgtactttggaatgccaggtgtttggcaattatctatggtggttgcctgac Alignment from Pairagon AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGG-CTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG atactatttttgtacaaccaactccacttcttcacctctttgccgtctagCATTACCCCTGGAGCGTGTATTTGACTATAGTGGGTACTGGGAAGGTTCTAGGGGATTGTA------TTTTGATTGCATGGCCACCATGAAATCCGGTAACTTGGATCTATACAAAAATGAGATTCCAGGGGGACAGTACACCAATCTGCATTTCCCAGCCCGTA------GACTTGGTCTCAAAGTTCAAGGCAGTTAAGAAAGCTTATGTGGAGGCTAACCAAATGCTGGGGGACCTCATCGAAgtactttggaatgccaggtgtttggcaattatctatggtggttgcctgac Alignment from Exonerate_protein2genome AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGC-TCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG atactatttttgtacaaccaactccacttcttcacctctttgccgtctagCATTACCCCTGGAGCGTGTATTTGACTATAGTGGGTACTGGGAAGGTTCTAGGGGATTGTAT------TTTGATTGCATGGCCACCATGAAATCCGGTAACTTGGATCTATACAAAAATGAGATTCCAGGGGGACAGTACACCAATCTGCATTTCCCAGCCCGTAGA------CTTGGTCTCAAAGTTCAAGGCAGTTAAGAAAGCTTATGTGGAGGCTAACCAAATGCTGGGGGACCTCATCGAAgtactttggaatgccaggtgtttggcaattatctatggtggttgcctgac Alignment from Exonerate_coding2genome AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGC-TCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG atactatttttgtacaaccaactccacttcttcacctctttgccgtctagCATTACCCCTGGAGCGTGTATTTGACTATAGTGGGTACTGGGAAGGTTCTAGGGGATTGTAT------TTTGATTGCATGGCCACCATGAAATCCGGTAACTTGGATCTATACAAAAATGAGATTCCAGGGGGACAGTACACCAATCTGCATTTCCCAGCCCGTAGA------CTTGGTCTCAAAGTTCAAGGCAGTTAAGAAAGCTTATGTGGAGGCTAACCAAATGCTGGGGGACCTCATCGAAgtactttggaatgccaggtgtttggcaattatctatggtggttgcctgac Alignment from GeneWise AGGTACCCCTGGAGCGTGTGTTTGACTACAGTGAGTACTGGGAAGGGGCTCGGGGACTGTACGCAGCCTTCGATTGCACGGCTACCATGAAGTCTGGCAACTCCGACGTGTATGAGAATGAGATTCCAGGGGGCCAGTACACCAACCTGCACTTCCAGGCCCATAGCATGGGGCTTGGCTCCAAGTTCAAGGAGGTCAAGAAGGCCTATGTGGAGGCTAACCAGATGCTGGGGGACCTCATCAAG atactatttttgtacaaccaactccacttcttcacctctttgccgtctagCATTACCCCTGGAGCGTGTATTTGACTATAGTGGGTACTGGGAAGGTTCTAGGGGATTGTAT------TTTGATTGCATGGCCACCATGAAATCCGGTAACTTGGATCTATACAAAAATGAGATTCCAGGGGGACAGTACACCAATCTGCATTTCCCAGCCCGTAGACTTGGTCTCA-----AAGTTCAAGGCAGTTAAGAAAGCTTATGTGGAGGCTAACCAAATGCTGGGGGACCTCATCGAAgtactttggaatgccaggtgtttggcaattatctatggtggttgcctgac #### Pcx_ID568_17 --> 0 - 0 Original Alignment GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTG-CAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ttatctatggtggttgcctgacaagcctgtctgtcttttgccttgaacagGTGAAGTCATCTTCCAAGATTGTGGGAGACCTAGCCCAGTTCATGGTGCCAGAATGGGTCAAGCCGGACTGAGACAGAAGCTCAGGCAGAAGAGCTCTCCTTCCCCTGTTCTGTAGTAGAGTTCCTACAGGGGTATATTGGCATCCCACATGGAGGTTTCCCTAAGCCATTTCATTCTAAAgtaagttaggttggtcagggtggaaacaggtcttaccgatgctctttctc Alignment from CESAR GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTG-CAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ttatctatggtggttgcctgacaagcctgtctgtcttttgccttgaacagGTGAAGTCATCTTCCAAGATTGTGGGAGACCTAGCCCAGTTCATGGTGCCAGAATGGGTCAAGCCGGACTGAGACAGAAGCTCAGGCAGAAGAGCTCTCCTTCCCCTGTTCTGTAGTAGAGTTCCTACAGGGGTATATTGGCATCCCACATGGAGGTTTCCCTAAGCCATTTCATTCTAAAgtaagttaggttggtcagggtggaaacaggtcttaacttgcctctgctcg Alignment from Spaln_aa2Genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTG-CAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ttatctatggtggttgcctgacaagcctgtctgtcttttgccttgaacagGTGAAGTCATCTTCCAAGATTGTGGGAGACCTAGCCCAGTTCATGGTGcCAGAATGGGTCAAGCCGGACTGAGACAGAAGCTCAGGCAGAAGAGCTCTCCTTCCCCTGTTCTGTAGTAGAGTTCCTACAGGGGTATATTGGCATCCCACATGGAGGTTTCCCTAAGCCATTTCATTCTAAAgtaagttaggttggtcagggtggaaacaggtcttaccgatgctctttctc Alignment from Spaln_nt2Genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTGC-AGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ttatctatggtggttgcctgacaagcctgtctgtcttttgccttgaacagGTGAAGTCATCTTCCAAGATTGTGGGAGACCTAGCCCAGTTCATGGTGCCAGAATGGGTCAAGCCGGACTGAGACAGAAGCTCAGGCAGAAGAGCTCTCCTTCCCCTGTTCTGTAGTAGAGTTCCTACAGGGGTATATTGGCATCCCACATGGAGGTTTCCCTAAGCCATTTCATTCTAAAgtaagttaggttggtcagggtggaaacaggtcttaccgatgctctttctc Alignment from Pairagon ------------------------------------------------AGGTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTG-CAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG TTATCTATGGTGGTTGCCTGACAAGCCTGTCTGTCTTTTGCCTTGAACAGGTGAAGTCATCTTCCAAGATTGTGGGAGACCTAGCCCAGTTCATGGTGCCAGAATGGGTCAAGCCGGACTGAGACAGAAGCTCAGGCAGAAGAGCTCTCCTTCCCCTGTTCTGTAGTAGAGTTCCTACAGGGGTATATTGGCATCCCACATGGAGGTTTCCCTAAGCCATTTCATTCTAAAgtaagttaggttggtcagggtggaaacaggtcttaccgatgctctttctc Alignment from Exonerate_protein2genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTG-CAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ttatctatggtggttgcctgacaagcctgtctgtcttttgccttgaacagGTGAAGTCATCTTCCAAGATTGTGGGAGACCTAGCCCAGTTCATGGTGCCAGAATGGGTCAAGCCGGACTGAGACAGAAGCTCAGGCAGAAGAGCTCTCCTTCCCCTGTTCTGTAGTAGAGTTCCTACAGGGGTATATTGGCATCCCACATGGAGGTTTCCCTAAGCCATTTCATTCTAAAgtaagttaggttggtcagggtggaaacaggtcttaccgatgctctttctc Alignment from Exonerate_coding2genome GTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATGGTG-CAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG ttatctatggtggttgcctgacaagcctgtctgtcttttgccttgaacagGTGAAGTCATCTTCCAAGATTGTGGGAGACCTAGCCCAGTTCATGGTGCCAGAATGGGTCAAGCCGGACTGAGACAGAAGCTCAGGCAGAAGAGCTCTCCTTCCCCTGTTCTGTAGTAGAGTTCCTACAGGGGTATATTGGCATCCCACATGGAGGTTTCCCTAAGCCATTTCATTCTAAAgtaagttaggttggtcagggtggaaacaggtcttaccgatgctctttctc Alignment from GeneWise -----------------------------------------------AAGGTGACACCATCCTCCAAGATTGTGGGGGACCTGGCCCAGTTCATG-GTGCAGAATGGGTTGAGCCGGGCAGAGGCAGAAGCTCAGGCAGAAGAGCTGTCCTTCCCCCGCTCTGTGGTGGAGTTCCTGCAGGGCTACATTGGCATTCCCCATGGGGGTTTCCCTGAGCCCTTTCGCTCTAAG TTATCTATGGTGGTTGCCTGACAAGCCTGTCTGTCTTTTGCCTTGAACAGGTGAAGTCATCTTCCAAGATTGTGGGAGACCTAGCCCAGTTCATGGTGCCAGAATGGGTCAAGCCGGACTGAGACAGAAGCTCAGGCAGAAGAGCTCTCCTTCCCCTGTTCTGTAGTAGAGTTCCTACAGGGGTATATTGGCATCCCACATGGAGGTTTCCCTAAGCCATTTCATTCTAAAgtaagttaggttggtcagggtggaaacaggtcttaccgatgctctttctc #### Pcx_ID570_19 --> 0 - 0 Original Alignment GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTC-TTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG ctgccaccaagacttagtcccccccccctgtccctctcttttcttcttagGTTGAGCTAGAGCAAGGAAAAACACTGCACATTAAAGCTTTGGCTATAAGTGACCTGAACCGCACTGGCCAGAGACAGGTGTTTCTTTGAACTCAATGGGCAGCTTCGATCCATTTTAGTCAAAGACACCCAGTCCATGAAGgtaatgctaaatttgattccattaggtagtcacactacccggtttcttct Alignment from CESAR GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTG-TTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG ctgccaccaagacttagtcccccccccctgtccctctcttttcttcttagGTTGAGCTAGAGCAAGGAAAAACACTGCACATTAAAGCTTTGGCTATAAGTGACCTGAACCGCACTGGCCAGAGACAGGTGTTTCTTTGAACTCAATGGGCAGCTTCGATCCATTTTAGTCAAAGACACCCAGTCCATGAAGgtaatgctaaatttgattccattaggtagtcacacttgccgctgctctta Alignment from Spaln_aa2Genome GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTTC-TTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG ctgccaccaagacttagtcccccccccctgtccctctcttttcttcttagGTTGAGCTAGAGCAAGGAAAAACACTGCACATTAAAGCTTTGGCTATAAGTGACCTGAACCGCACTGGCCAGAGACAGGTGTTTcTTTGAACTCAATGGGCAGCTTCGATCCATTTTAGTCAAAGACACCCAGTCCATGAAGgtaatgctaaatttgattccattaggtagtcacactacccggtttcttct Alignment from Spaln_nt2Genome GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTGTT-CTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG ctgccaccaagacttagtcccccccccctgtccctctcttttcttcttagGTTGAGCTAGAGCAAGGAAAAACACTGCACATTAAAGCTTTGGCTATAAGTGACCTGAACCGCACTGGCCAGAGACAGGTGTTTCTTTGAACTCAATGGGCAGCTTCGATCCATTTTAGTCAAAGACACCCAGTCCATGAAGgtaatgctaaatttgattccattaggtagtcacactacccggtttcttct Alignment from Pairagon GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTG-TTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG ctgccaccaagacttagtcccccccccctgtccctctcttttcttcttagGTTGAGCTAGAGCAAGGAAAAACACTGCACATTAAAGCTTTGGCTATAAGTGACCTGAACCGCACTGGCCAGAGACAGGTGTTTCTTTGAACTCAATGGGCAGCTTCGATCCATTTTAGTCAAAGACACCCAGTCCATGAAGgtaatgctaaatttgattccattaggtagtcacactacccggtttcttct Alignment from Exonerate_protein2genome GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTG-TTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG ctgccaccaagacttagtcccccccccctgtccctctcttttcttcttagGTTGAGCTAGAGCAAGGAAAAACACTGCACATTAAAGCTTTGGCTATAAGTGACCTGAACCGCACTGGCCAGAGACAGGTGTTTCTTTGAACTCAATGGGCAGCTTCGATCCATTTTAGTCAAAGACACCCAGTCCATGAAGgtaatgctaaatttgattccattaggtagtcacactacccggtttcttct Alignment from Exonerate_coding2genome GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAGGTG-TTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG ctgccaccaagacttagtcccccccccctgtccctctcttttcttcttagGTTGAGCTAGAGCAAGGAAAAACACTGCACATTAAAGCTTTGGCTATAAGTGACCTGAACCGCACTGGCCAGAGACAGGTGTTTCTTTGAACTCAATGGGCAGCTTCGATCCATTTTAGTCAAAGACACCCAGTCCATGAAGgtaatgctaaatttgattccattaggtagtcacactacccggtttcttct Alignment from GeneWise GTTGAGCTGGAACGGGGCAAGACCCTGCACATCAAAGCCCTGGCTGTAAGCGACCTGAACCGTGCTGGCCAGAGGCAG-GTGTTCTTTGAACTCAATGGGCAGCTTCGATCCATTCTGGTTAAAGACACCCAGGCCATGAAG ctgccaccaagacttagtcccccccccctgtccctctcttttcttcttagGTTGAGCTAGAGCAAGGAAAAACACTGCACATTAAAGCTTTGGCTATAAGTGACCTGAACCGCACTGGCCAGAGACAGGTGTTTCTTTGAACTCAATGGGCAGCTTCGATCCATTTTAGTCAAAGACACCCAGTCCATGAAGgtaatgctaaatttgattccattaggtagtcacactacccggtttcttct #### Pdcd11_ID10129_23 --> 0 - 1 Original Alignment GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCT-TTCTTATGTCTGTCACTCATAg gaccccatgttcactaacaaatcttggttttgctttttgtttttacttagGTTCTCAAACACCCGGACAGAAAGTTCCAGGTAGGGCAGGCCATTGAGGCCACAGTTGTTGACCCAGAAGTCCCCAGGGCTCTTTTTATGTCTGTCACTCATTggtaagcaataatttggtttatgccagaatgagactgtgtgggagtttttc Alignment from CESAR GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCT-TTCTTATGTCTGTCACTCATAg gaccccatgttcactaacaaatcttggttttgctttttgtttttacttagGTTCTCAAACACCCGGACAGAAAGTTCCAGGTAGGGCAGGCCATTGAGGCCACAGTTGTTGACCCAGAAGTCCCCAGGGCTCTTTTTATGTCTGTCACTCATTggtaagcaataatttggtttatgccagaatgagactgtgtgggagtttttc Alignment from Spaln_aa2Genome GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCT-TTCTTATGTCTGTCACTCATAG gaccccatgttcactaacaaatcttggttttgctttttgtttttacttagGTTCTCAAACACCCGGACAGAAAGTTCCAGGTAGGGCAGGCCATTGAGGCCACAGTTGTTGACCCAGAAGTCCCCAGGGCTcTTTTTATGTCTGTCACTCATTGgtaagcaataatttggtttatgccagaatgagactgtgtgggagtttttc Alignment from Spaln_nt2Genome GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCT-TTCTTATGTCTGTCACTCATAG gaccccatgttcactaacaaatcttggttttgctttttgtttttacttagGTTCTCAAACACCCGGACAGAAAGTTCCAGGTAGGGCAGGCCATTGAGGCCACAGTTGTTGACCCAGAAGTCCCCAGGGCTCTTTTTATGTCTGTCACTCATTGgtaagcaataatttggtttatgccagaatgagactgtgtgggagtttttc Alignment from Pairagon GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCT-TTCTTATGTCTGTCACTCATAG gaccccatgttcactaacaaatcttggttttgctttttgtttttacttagGTTCTCAAACACCCGGACAGAAAGTTCCAGGTAGGGCAGGCCATTGAGGCCACAGTTGTTGACCCAGAAGTCCCCAGGGCTCTTTTTATGTCTGTCACTCATTGgtaagcaataatttggtttatgccagaatgagactgtgtgggagtttttc Alignment from Exonerate_protein2genome GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGGGCT-TTCTTATGTCTGTCACTCATAG gaccccatgttcactaacaaatcttggttttgctttttgtttttacttagGTTCTCAAACACCCGGACAGAAAGTTCCAGGTAGGGCAGGCCATTGAGGCCACAGTTGTTGACCCAGAAGTCCCCAGGGCTCTTTTTATGTCTGTCACTCATTGgtaagcaataatttggtttatgccagaatgagactgtgtgggagtttttc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTTCTGAAACACCCAGACAAGAAGTTCCAGGTTGGGCAGGCCATCGAGGCCACCGTTGTTGACCCAGACGTCCCCAGG-GCTTTCTTATGTCTGTCACTCATAG gaccccatgttcactaacaaatcttggttttgctttttgtttttacttagGTTCTCAAACACCCGGACAGAAAGTTCCAGGTAGGGCAGGCCATTGAGGCCACAGTTGTTGACCCAGAAGTCCCCAGGGCTCTTTTTATGTCTGTCACTCATTGgtaagcaataatttggtttatgccagaatgagactgtgtgggagtttttc #### Pdcd11_ID10134_28 --> 1 - 0 Original Alignment cGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAG-GAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggggtgcccggacaccttcttccccatcaagtatttgccttctcttttagcATCAACCCCATGAAGAACCTGATAGAGTTGTCCCTCCTTCCAAGTGACACTGGGAGGCAAGATGTTTCCCCTCCTGCCCCGGAACCAGAACAAGAGCGAAGGTAGCGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAGAAGAATCAGAAGAGACGGGATGAGAAGGAAGAGCCGCAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgagtcaggcagtatgtattgcctcatctcacttagggagtatgggaca Alignment from CESAR cGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAG-GAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggggtgcccggacaccttcttccccatcaagtatttgccttctcttttagcATCAACCCCATGAAGAACCTGATAGAGTTGTCCCTCCTTCCAAGTGACACTGGGAGGCAAGATGTTTCCCCTCCTGCCCCGGAACCAGAACAAGAGCGAAGGTAGCGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAGAAGAATCAGAAGAGACGGGATGAGAAGGAAGAGCCGCAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgagtcaggcagtatgtattgcctcatctcacttagggagtatgggaca Alignment from Spaln_aa2Genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAG-GAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggggtgcccggacaccttcttccccatcaagtatttgccttctcttttagCATCAACCCCATGAAGAACCTGATAGAGTTGTCCCTCCTTCCAAGTGACACTGGGAGGCAAGATGTTTCCCCTCCTGCCCCGGAACCAGAACAAGAGcGAAGGTAGCGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAGAAGAATCAGAAGAGACGGGATGAGAAGGAAGAGCCGCAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgagtcaggcagtatgtattgcctcatctcacttagggagtatgggaca Alignment from Spaln_nt2Genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAG-GAGAGGAGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggggtgcccggacaccttcttccccatcaagtatttgccttctcttttagCATCAACCCCATGAAGAACCTGATAGAGTTGTCCCTCCTTCCAAGTGACACTGGGAGGCAAGATGTTTCCCCTCCTGCCCCGGAACCAGAACAAGAGCGAAGGTAGCGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAGAAGAATCAGAAGAGACGGGATGAGAAGGAAGAGCCGCAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgagtcaggcagtatgtattgcctcatctcacttagggagtatgggaca Alignment from Pairagon CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGG-AGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggggtgcccggacaccttcttccccatcaagtatttgccttctcttttagCATCAACCCCATGAAGAACCTGATAGAGTTGTCCCTCCTTCCAAGTGACACTGGGAGGCAAGATGTTTCCCCTCCTGCCCCGGAACCAGAACAAGAGCGAAGGTAGCGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAGAAGAATCAGAAGAGACGGGATGAGAAGGAAGAGCCGCAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgagtcaggcagtatgtattgcctcatctcacttagggagtatgggaca Alignment from Exonerate_protein2genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGG-AGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggggtgcccggacaccttcttccccatcaagtatttgccttctcttttagCATCAACCCCATGAAGAACCTGATAGAGTTGTCCCTCCTTCCAAGTGACACTGGGAGGCAAGATGTTTCCCCTCCTGCCCCGGAACCAGAACAAGAGCGAAGGTAGCGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAGAAGAATCAGAAGAGACGGGATGAGAAGGAAGAGCCGCAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgagtcaggcagtatgtattgcctcatctcacttagggagtatgggaca Alignment from Exonerate_coding2genome CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGG-AGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggggtgcccggacaccttcttccccatcaagtatttgccttctcttttagCATCAACCCCATGAAGAACCTGATAGAGTTGTCCCTCCTTCCAAGTGACACTGGGAGGCAAGATGTTTCCCCTCCTGCCCCGGAACCAGAACAAGAGCGAAGGTAGCGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAGAAGAATCAGAAGAGACGGGATGAGAAGGAAGAGCCGCAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgagtcaggcagtatgtattgcctcatctcacttagggagtatgggaca Alignment from GeneWise CGTGAACCCCATGAAGAACCTGATAGAGCTGTCGCTCCTTCCCAGCGACACTGGGAGGCCAGACGTGTTCTCTCCTGCTCCAGAACCAAAACAAGAGGAGAGG-AGCGGAGGGGCTGAGGAGGGCCAGAAAAGGAAAGAGAAGAACCAGAAGAGACGGGAGGAGAAGGAAGAGCCCCAGAAGTCACAGAGGGGTGGGCGAGGCAAGCGGGAGCGCCAGGAGTCTGAGAGCGAGCAG ggggtgcccggacaccttcttccccatcaagtatttgccttctcttttagCATCAACCCCATGAAGAACCTGATAGAGTTGTCCCTCCTTCCAAGTGACACTGGGAGGCAAGATGTTTCCCCTCCTGCCCCGGAACCAGAACAAGAGCGAAGGTAGCGGAGGGGCTGAAGGGGGCCAAAAACAGAAGGAGAAGAATCAGAAGAGACGGGATGAGAAGGAAGAGCCGCAGAAGTCACAGAGGGGTGGGCGAGGTAAGCGTGAGCATCATGAATCTGAGAGTGAGCAGgtgagtcaggcagtatgtattgcctcatctcacttagggagtatgggaca #### Pdcd11_ID10135_29 --> 0 - 0 Original Alignment GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAG-GTGGGGGAGCCGAAGCTGCCACCCAGG tgctctatgcttggggggaagctccccctgttacctctgaacccttctagGATCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGATAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGACGAGCGTGGGGGAGCCAAAGCTGCCGCCCAGGgtgagttttatgggatgtactatgggacaactttagtcaagagctgctcc Alignment from CESAR GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAG-GTGGGGGAGCCGAAGCTGCCACCCAGG tgctctatgcttggggggaagctccccctgttacctctgaacccttctagGATCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGATAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGACGAGCGTGGGGGAGCCAAAGCTGCCGCCCAGGgtgagttttatgggatgtactatgggacaactttagtcaagagctgctcc Alignment from Spaln_aa2Genome GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAGGTGGGG-GAGCCGAAGCTGCCACCCAGG tgctctatgcttggggggaagctccccctgttacctctgaacccttctagGATCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGATAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGACGAGCGTGGGgGAGCCAAAGCTGCCGCCCAGGgtgagttttatgggatgtactatgggacaactttagtcaagagctgctcc Alignment from Spaln_nt2Genome GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAAG------TGTACTACCGGGAAGGAGAGGATGAG-GTGGGGGAGCCGAAGCTGCCACCCAGG tgctctatgcttggggggaagctccccctgttacctctgaacccttctagGATCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGATAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGACGAGCGTGGGGGAGCCAAAGCTGCCGCCCAGGgtgagttttatgggatgtactatgggacaactttagtcaagagctgctcc Alignment from Pairagon GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGA------AGTGTACTACCGGGAAGGAGAGGATGAG-GTGGGGGAGCCGAAGCTGCCACCCAGG tgctctatgcttggggggaagctccccctgttacctctgaacccttctagGATCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGATAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGACGAGCGTGGGGGAGCCAAAGCTGCCGCCCAGGgtgagttttatgggatgtactatgggacaactttagtcaagagctgctcc Alignment from Exonerate_protein2genome GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAG-GTGGGGGAGCCGAAGCTGCCACCCAGG tgctctatgcttggggggaagctccccctgttacctctgaacccttctagGATCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGATAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGACGAGCGTGGGGGAGCCAAAGCTGCCGCCCAGGgtgagttttatgggatgtactatgggacaactttagtcaagagctgctcc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GAACTAGTGAACAAGAGGCCAAAGAAGTCTGGAGCCGCAGAAGAAGACGACAGTGGTGTGGAA------GTGTACTACCGGGAAGGAGAGGATGAG-GTGGGGGAGCCGAAGCTGCCACCCAGG tgctctatgcttggggggaagctccccctgttacctctgaacccttctagGATCTAGTAAACAAGAGGCCAAAGAGGTCTGGGGCTGCAGAGGAGGATGATAGTGGGGTGGAAGCTTCAGTATACTACCGGGAAGGAGAGGACGAGCGTGGGGGAGCCAAAGCTGCCGCCCAGGgtgagttttatgggatgtactatgggacaactttagtcaagagctgctcc #### Pdcd11_ID10140_34 --> 2 - 2 Original Alignment atGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAG-CGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCag cctgttctaatcagccacttttggggtcctactgtgctttctcttgctagatGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAACTTGGGGATGTGAAGCCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTCACATGACCATCAAGCATGGCAGCCATACAGCAGTCaggtaagtgtaacgacagggataattgcaacagaacaagcggtaggaggtga Alignment from CESAR atGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAG-CGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCag cctgttctaatcagccacttttggggtcctactgtgctttctcttgctagatGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAACTTGGGGATGTGAAGCCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTCACATGACCATCAAGCATGGCAGCCATACAGCAGTCaggtaagtgtaacgacagggataattgcaacagaacaagcggtaggaggtga Alignment from Spaln_aa2Genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAG-CGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cctgttctaatcagccacttttggggtcctactgtgctttctcttgctagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAACTTGGGGATGTGAAGcCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTCACATGACCATCAAGCATGGCAGCCATACAGCAGTCAGgtaagtgtaacgacagggataattgcaacagaacaagcggtaggaggtga Alignment from Spaln_nt2Genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAGC-GCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cctgttctaatcagccacttttggggtcctactgtgctttctcttgctagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAACTTGGGGATGTGAAGCCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTCACATGACCATCAAGCATGGCAGCCATACAGCAGTCAGgtaagtgtaacgacagggataattgcaacagaacaagcggtaggaggtga Alignment from Pairagon ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAG-CGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cctgttctaatcagccacttttggggtcctactgtgctttctcttgctagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAACTTGGGGATGTGAAGCCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTCACATGACCATCAAGCATGGCAGCCATACAGCAGTCAGgtaagtgtaacgacagggataattgcaacagaacaagcggtaggaggtga Alignment from Exonerate_protein2genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAG-CGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cctgttctaatcagccacttttggggtcctactgtgctttctcttgctagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAACTTGGGGATGTGAAGCCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTCACATGACCATCAAGCATGGCAGCCATACAGCAGTCAGgtaagtgtaacgacagggataattgcaacagaacaagcggtaggaggtga Alignment from Exonerate_coding2genome ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTGGAG-CGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cctgttctaatcagccacttttggggtcctactgtgctttctcttgctagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAACTTGGGGATGTGAAGCCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTCACATGACCATCAAGCATGGCAGCCATACAGCAGTCAGgtaagtgtaacgacagggataattgcaacagaacaagcggtaggaggtga Alignment from GeneWise ATGTGGATGTGATCGTCAAGTTTGCCCAGCTGGAGTTCCAGCTCGGGGACGTG-GAGCGCGCTAAAGCCATTTTTGAAAACACACTGAGCACCTACCCCAAACGCACAGACGTCTGGTCAGTCTACATCGACATGACCATCAAGCACGGCAGCCAGACAGCAGTCAG cctgttctaatcagccacttttggggtcctactgtgctttctcttgctagATGTGGATGTGATTGTTAAGTTTGCCCAGCTGGAGTTCCAACTTGGGGATGTGAAGCCGAGCTAAAGCCATTTTTGAAAACACACTGAGTGCCTACCCCAAACGCACGGATGTCTGGTCAGTCTACATTCACATGACCATCAAGCATGGCAGCCATACAGCAGTCAGgtaagtgtaacgacagggataattgcaacagaacaagcggtaggaggtga #### Pga5_ID2971_7 --> 1 - 0 Original Alignment cATCTCCATGAATGGG-GAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG attgggctgtaatgtgattgtgttgctctttattcaatgctgtttttaagcAATTCCATGAATGGGCGAGGCCATTGCATCAGATGGTAGCTGCCAAGGCATTATGGATACAGGGGCTTCATTGCTGACTAGCCCTCAAAGCACCATTGTTAATATCCAGAATGTAATTGGTGCCAAGGGCTCTGGTGATGGCCAGgtaagagtttagaaggttaaggttacgggcagcccgctctgggcctcctg Alignment from CESAR cATCTCCATGAATGGG-GAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG attgggctgtaatgtgattgtgttgctctttattcaatgctgtttttaagcAATTCCATGAATGGGCGAGGCCATTGCATCAGATGGTAGCTGCCAAGGCATTATGGATACAGGGGCTTCATTGCTGACTAGCCCTCAAAGCACCATTGTTAATATCCAGAATGTAATTGGTGCCAAGGGCTCTGGTGATGGCCAGgtaagagtttagaaggttaaggttacgggcagcccgctctgggcctcctg Alignment from Spaln_aa2Genome CATCTCCATGAAT-GGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG attgggctgtaatgtgattgtgttgctctttattcaatgctgtttttaagCAATTCCATGAATgGGCGAGGCCATTGCATCAGATGGTAGCTGCCAAGGCATTATGGATACAGGGGCTTCATTGCTGACTAGCCCTCAAAGCACCATTGTTAATATCCAGAATGTAATTGGTGCCAAGGGCTCTGGTGATGGCCAGgtaagagtttagaaggttaaggttacgggcagcccgctctgggcctcctg Alignment from Spaln_nt2Genome CATCTCCATGAATGGG-GAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG attgggctgtaatgtgattgtgttgctctttattcaatgctgtttttaagCAATTCCATGAATGGGCGAGGCCATTGCATCAGATGGTAGCTGCCAAGGCATTATGGATACAGGGGCTTCATTGCTGACTAGCCCTCAAAGCACCATTGTTAATATCCAGAATGTAATTGGTGCCAAGGGCTCTGGTGATGGCCAGgtaagagtttagaaggttaaggttacgggcagcccgctctgggcctcctg Alignment from Pairagon CATCTCCATGAATGGG-GAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG attgggctgtaatgtgattgtgttgctctttattcaatgctgtttttaagCAATTCCATGAATGGGCGAGGCCATTGCATCAGATGGTAGCTGCCAAGGCATTATGGATACAGGGGCTTCATTGCTGACTAGCCCTCAAAGCACCATTGTTAATATCCAGAATGTAATTGGTGCCAAGGGCTCTGGTGATGGCCAGgtaagagtttagaaggttaaggttacgggcagcccgctctgggcctcctg Alignment from Exonerate_protein2genome CATCTCCATGAAT-GGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG attgggctgtaatgtgattgtgttgctctttattcaatgctgtttttaagCAATTCCATGAATGGGCGAGGCCATTGCATCAGATGGTAGCTGCCAAGGCATTATGGATACAGGGGCTTCATTGCTGACTAGCCCTCAAAGCACCATTGTTAATATCCAGAATGTAATTGGTGCCAAGGGCTCTGGTGATGGCCAGgtaagagtttagaaggttaaggttacgggcagcccgctctgggcctcctg Alignment from Exonerate_coding2genome CATCTCCATGAAT-GGGGAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG attgggctgtaatgtgattgtgttgctctttattcaatgctgtttttaagCAATTCCATGAATGGGCGAGGCCATTGCATCAGATGGTAGCTGCCAAGGCATTATGGATACAGGGGCTTCATTGCTGACTAGCCCTCAAAGCACCATTGTTAATATCCAGAATGTAATTGGTGCCAAGGGCTCTGGTGATGGCCAGgtaagagtttagaaggttaaggttacgggcagcccgctctgggcctcctg Alignment from GeneWise CATCTCCATGAATGGG-GAGGTCATTGCCTGTGATGGTGGCTGCCAAGGTATTATGGACACAGGGACCTCCTTGCTGACCGGCCCCCGAAGCTCCATCGTTAACATCCAGAATCTAATTGGTGCCAAGGCTTCTGGTGACGGCGAG attgggctgtaatgtgattgtgttgctctttattcaatgctgtttttaagCAATTCCATGAATGGGCGAGGCCATTGCATCAGATGGTAGCTGCCAAGGCATTATGGATACAGGGGCTTCATTGCTGACTAGCCCTCAAAGCACCATTGTTAATATCCAGAATGTAATTGGTGCCAAGGGCTCTGGTGATGGCCAGgtaagagtttagaaggttaaggttacgggcagcccgctctgggcctcctg #### Pitpnm1_ID309_6 --> 2 - 1 Original Alignment gcGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATG-CAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATg atcttaagcttccaaaggcttccaaggtgcatgtggctttggtgacccaggtGGTGTATCTCCACAGAGTTTGTCTGAATGGCACATGCCAGAACGTTGCCCGAGACTCCAAAAACAGCTCTGAGGAAGACTTCTTTGATCCCCATggtgcggaagatgtaaaggcagaatgtagagaatgctgttataggcgttat Alignment from CESAR gcGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATG-CAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATg atcttaagcttccaaaggcttccaaggtgcatgtggctttggtgacccaggtGGTGTATCTCCACAGAGTTTGTCTGAATGGCACATGCCAGAACGTTGCCCGAGACTCCAAAAACAGCTCTGAGGAAGACTTCTTTGATCCCCATggtgcggaagatgtaaaggcagaatgtagagaatgctgttataggcgttat Alignment from Spaln_aa2Genome GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATG-CAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG atcttaagcttccaaaggcttccaaggtgcatgtggctttggtgacccagGTGGTGTATCTCCACAGAGTTTGTCTGAATGGCACATGcCAGAACGTTGCCCGAGACTCCAAAAACAGCTCTGAGGAAGACTTCTTTGATCCCCATGgtgcggaagatgtaaaggcagaatgtagagaatgctgttataggcgttat Alignment from Spaln_nt2Genome GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATGC-AGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG atcttaagcttccaaaggcttccaaggtgcatgtggctttggtgacccagGTGGTGTATCTCCACAGAGTTTGTCTGAATGGCACATGCCAGAACGTTGCCCGAGACTCCAAAAACAGCTCTGAGGAAGACTTCTTTGATCCCCATGgtgcggaagatgtaaaggcagaatgtagagaatgctgttataggcgttat Alignment from Pairagon GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATG-CAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG atcttaagcttccaaaggcttccaaggtgcatgtggctttggtgacccagGTGGTGTATCTCCACAGAGTTTGTCTGAATGGCACATGCCAGAACGTTGCCCGAGACTCCAAAAACAGCTCTGAGGAAGACTTCTTTGATCCCCATGgtgcggaagatgtaaaggcagaatgtagagaatgctgttataggcgttat Alignment from Exonerate_protein2genome GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATG-CAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG atcttaagcttccaaaggcttccaaggtgcatgtggctttggtgacccagGTGGTGTATCTCCACAGAGTTTGTCTGAATGGCACATGCCAGAACGTTGCCCGAGACTCCAAAAACAGCTCTGAGGAAGACTTCTTTGATCCCCATGgtgcggaagatgtaaaggcagaatgtagagaatgctgttataggcgttat Alignment from Exonerate_coding2genome GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATG-CAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG atcttaagcttccaaaggcttccaaggtgcatgtggctttggtgacccagGTGGTGTATCTCCACAGAGTTTGTCTGAATGGCACATGCCAGAACGTTGCCCGAGACTCCAAAAACAGCTCTGAGGAAGACTTCTTTGATCCCCATGgtgcggaagatgtaaaggcagaatgtagagaatgctgttataggcgttat Alignment from GeneWise GCGGCGTGTCTCCACAGAGCTTGTCTGAGTGGCGCATG-CAGAACATTGCCCGAGACTCTGAGAACAGCTCCGAGGAAGAATTCTTTGATGCCCATG atcttaagcttccaaaggcttccaaggtgcatgtggctttggtgacccagGTGGTGTATCTCCACAGAGTTTGTCTGAATGGCACATGCCAGAACGTTGCCCGAGACTCCAAAAACAGCTCTGAGGAAGACTTCTTTGATCCCCATGgtgcggaagatgtaaaggcagaatgtagagaatgctgttataggcgttat #### Pitpnm1_ID312_9 --> 0 - 2 Original Alignment GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGA-GACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCaa aacagctggggtcaacatgtactcttgtctgagtcctccctatccctcagGGACTGGATGGAGCTGGGGACCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGCGACACCAACTCTAAGCAAGCCGATGTGCAAACACTGAGCACTGCTTTTGAGGCTGTCTTCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCGCTGCGGCTGATACCCTGTCCATCC---TGTGCAGCAGCTTATGCGCTTGTCTCCaagtaacagcagagaggaaaagtgagcagacataaacagggcaagtaatgat Alignment from CESAR GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGA-GACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCaa aacagctggggtcaacatgtactcttgtctgagtcctccctatccctcagGGACTGGATGGAGCTGGGGACCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGCGACACCAACTCTAAGCAAGCCGATGTGCAAACACTGAGCACTGCTTTTGAGGCTGTCTTCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCGCTGCGGCTGATACCCTGTCCATCC---TGTGCAGCAGCTTATGCGCTTGTCTCCaagtaacagcagagaggaaaagtgagcagacataaacagggcaagtaatgat Alignment from Spaln_aa2Genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGA-GACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagctggggtcaacatgtactcttgtctgagtcctccctatccctcagGGACTGGATGGAGCTGGGGACCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGcGACACCAACTCTAAGCAAGCCGATGTGCAAACACTGAGCACTGCTTTTGAGGCTGTCTTCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCGCTGCGGCTGATACCCTGTCCATCC---TGTGCAGCAGCTTATGCGCTTGTCTCCAAgtaacagcagagaggaaaagtgagcagacataaacagggcaagtaatgat Alignment from Spaln_nt2Genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCT-GGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagctggggtcaacatgtactcttgtctgagtcctccctatccctcagGGACTGGATGGAGCTGGGGACCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGCGACACCAACTCTAAGCAAGCCGATGTGCAAACACTGAGCACTGCTTTTGAGGCTGTCTTCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCGCTGCGGCTGATACCCTGTCCATCC---TGTGCAGCAGCTTATGCGCTTGTCTCCAAgtaacagcagagaggaaaagtgagcagacataaacagggcaagtaatgat Alignment from Pairagon GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCTGGA-GACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagctggggtcaacatgtactcttgtctgagtcctccctatccctcagGGACTGGATGGAGCTGGGGACCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGCGACACCAACTCTAAGCAAGCCGATGTGCAAACACTGAGCACTGCTTTTGAGGCTGTCTTCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCGCTGCGGCTGATACCCTGTCCATCC---TGTGCAGCAGCTTATGCGCTTGTCTCCAAgtaacagcagagaggaaaagtgagcagacataaacagggcaagtaatgat Alignment from Exonerate_protein2genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCT-GGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagctggggtcaacatgtactcttgtctgagtcctccctatccctcagGGACTGGATGGAGCTGGGGACCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGCGACACCAACTCTAAGCAAGCCGATGTGCAAACACTGAGCACTGCTTTTGAGGCTGTCTTCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCGCTGCGGCTGATACCCTGTCCATCC---TGTGCAGCAGCTTATGCGCTTGTCTCCAAgtaacagcagagaggaaaagtgagcagacataaacagggcaagtaatgat Alignment from Exonerate_coding2genome GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCT-GGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagctggggtcaacatgtactcttgtctgagtcctccctatccctcagGGACTGGATGGAGCTGGGGACCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGCGACACCAACTCTAAGCAAGCCGATGTGCAAACACTGAGCACTGCTTTTGAGGCTGTCTTCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCGCTGCGGCTGATACCCTGTCCATCC---TGTGCAGCAGCTTATGCGCTTGTCTCCAAgtaacagcagagaggaaaagtgagcagacataaacagggcaagtaatgat Alignment from GeneWise GGCCTAGATGGAGCGGGGGATCTAGTGGTCGAGGCGTGCTCTGTGCATGCCCTCTTCCTCATCCTGCACAGCGGCAGCATCCTGGACTCTGGCCCT-GGAGACACCAACTCCAAGCAGGCCGACGTGCAAACGCTGAGCACAGCCTTTGAGGCCGTCACCCGAGTCCATTTCCCCGAGGCCCTGGGTCACGTGGCACTGCGGCTGGTGCCCTGTCCACCCATTTGCGCGGCTGCCTATGCTCTTGTCTCCAA aacagctggggtcaacatgtactcttgtctgagtcctccctatccctcagGGACTGGATGGAGCTGGGGACCTAGTTGTTGAAGCATGCTCTGTGCATGACCTCTTCCTCATACTGCACAGTGGCAGCATTCCAGACCCTGGCCCTGGGCGACACCAACTCTAAGCAAGCCGATGTGCAAACACTGAGCACTGCTTTTGAGGCTGTCTTCCGAGTTCATTCCCCCAAGGCACTTGGACATGTAGCGCTGCGGCTGATACCCTGTCCATCC---TGTGCAGCAGCTTATGCGCTTGTCTCCAAgtaacagcagagaggaaaagtgagcagacataaacagggcaagtaatgat #### Pitpnm1_ID313_10 --> 1 - 0 Original Alignment cCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTC-CTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG gagtggacctgatatgtttgtattacctctaatgctcggaaatcctccagtCTAAGTCCTTACAGCCATGATGGAGACTGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTTCTGGCCACCTTATCCTCTCAATACCAGGGTGCAGTCACCACCGTCATTGCTCACACCAACCAGGCCTTCGCAGCCTTCCCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcacaaaagttagtcaatacttatgctgccgc Alignment from CESAR cCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTC-CTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG gagtggacctgatatgtttgtattacctctaatgctcggaaatcctccagtCTAAGTCCTTACAGCCATGATGGAGACTGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTTCTGGCCACCTTATCCTCTCAATACCAGGGTGCAGTCACCACCGTCATTGCTCACACCAACCAGGCCTTCGCAGCCTTCCCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcacaaaagttagtcaatacttatgctgccgc Alignment from Spaln_aa2Genome CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTC-CTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG gagtggacctgatatgtttgtattacctctaatgctcggaaatcctccagTCTAAGTCCTTACAGCCATGATGGAGACTGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTTCTGGCCACCTTATCCTCTCAATACCAGGGTGCAGTCACCACCGTCATTGCTCACACCAACCAGGCCTTCGCAGCCTTCcCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcacaaaagttagtcaatacttatgctgccgc Alignment from Spaln_nt2Genome CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTC-CTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG gagtggacctgatatgtttgtattacctctaatgctcggaaatcctccagTCTAAGTCCTTACAGCCATGATGGAGACTGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTTCTGGCCACCTTATCCTCTCAATACCAGGGTGCAGTCACCACCGTCATTGCTCACACCAACCAGGCCTTCGCAGCCTTCCCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcacaaaagttagtcaatacttatgctgccgc Alignment from Pairagon CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTT-CCTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG gagtggacctgatatgtttgtattacctctaatgctcggaaatcctccagTCTAAGTCCTTACAGCCATGATGGAGACTGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTTCTGGCCACCTTATCCTCTCAATACCAGGGTGCAGTCACCACCGTCATTGCTCACACCAACCAGGCCTTCGCAGCCTTCCCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcacaaaagttagtcaatacttatgctgccgc Alignment from Exonerate_protein2genome CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTC-CTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG gagtggacctgatatgtttgtattacctctaatgctcggaaatcctccagTCTAAGTCCTTACAGCCATGATGGAGACTGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTTCTGGCCACCTTATCCTCTCAATACCAGGGTGCAGTCACCACCGTCATTGCTCACACCAACCAGGCCTTCGCAGCCTTCCCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcacaaaagttagtcaatacttatgctgccgc Alignment from Exonerate_coding2genome CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTC-CTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG gagtggacctgatatgtttgtattacctctaatgctcggaaatcctccagTCTAAGTCCTTACAGCCATGATGGAGACTGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTTCTGGCCACCTTATCCTCTCAATACCAGGGTGCAGTCACCACCGTCATTGCTCACACCAACCAGGCCTTCGCAGCCTTCCCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcacaaaagttagtcaatacttatgctgccgc Alignment from GeneWise CCTGAGCCCCTACAGCCATGATGGGGATAGCCTGTCCCGCTCCCAAGACCACATTCCGCTGGCTGCCCTGCCGCTCCTGGCCACCTCATCCTCTCGCTACCAGGGTGCCGTGGCCACTGTCATCGCTCGCACCAACCAGGCCTATGCAGCCTTC-CTGCGCTCATCGGAGGGCACAGGTTTCTGCGGGCAG gagtggacctgatatgtttgtattacctctaatgctcggaaatcctccagTCTAAGTCCTTACAGCCATGATGGAGACTGTCTATCCCGTTCCCAAGACCACATTCCATTGGCTACCCTGCCTCTTCTGGCCACCTTATCCTCTCAATACCAGGGTGCAGTCACCACCGTCATTGCTCACACCAACCAGGCCTTCGCAGCCTTCCCTGCGTTCATCAGAGGGCACTGGTTTCTGTGGACAAgtaggtggctgactgtgttcacaaaagttagtcaatacttatgctgccgc #### Pitpnm1_ID314_11 --> 0 - 0 Original Alignment GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCC-AGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tccatacaggtaaaaaaaccaccatattcatcaggttcctgtccacgcagGTGGTCTTAATTGGAGATGGGGTTGGTGGCATCCTTGGCTTTGATGCTCTCTGCCACAGTGCACAGTGCAGGCCCAGGGAGCCAGGGCAGCAGCCACCGTGGGAGCATGgtaagtttccagcccagggagccaccagcccagggagccagggcagcaac Alignment from CESAR GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCC-AGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tccatacaggtaaaaaaaccaccatattcatcaggttcctgtccacgcagGTGGTCTTAATTGGAGATGGGGTTGGTGGCATCCTTGGCTTTGATGCTCTCTGCCACAGTGCACAGTGCAGGCCCAGGGAGCCAGGGCAGCAGCCACCGTGGGAGCATGgtaagtttccagcccagggagccaccagcccagggagccagggcagcaac Alignment from Spaln_aa2Genome GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCC-AGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tccatacaggtaaaaaaaccaccatattcatcaggttcctgtccacgcagGTGGTCTTAATTGGAGATGGGGTTGGTGGCATCCTTGGCTTTGATGCTCTCTGCCACAGTGCAcAGTGCAGGCCCAGGGAGCCAGGGCAGCAGCCACCGTGGGAGCATGgtaagtttccagcccagggagccaccagcccagggagccagggcagcaac Alignment from Spaln_nt2Genome GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGC-CAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tccatacaggtaaaaaaaccaccatattcatcaggttcctgtccacgcagGTGGTCTTAATTGGAGATGGGGTTGGTGGCATCCTTGGCTTTGATGCTCTCTGCCACAGTGCACAGTGCAGGCCCAGGGAGCCAGGGCAGCAGCCACCGTGGGAGCATGgtaagtttccagcccagggagccaccagcccagggagccagggcagcaac Alignment from Pairagon GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGC-CAGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tccatacaggtaaaaaaaccaccatattcatcaggttcctgtccacgcagGTGGTCTTAATTGGAGATGGGGTTGGTGGCATCCTTGGCTTTGATGCTCTCTGCCACAGTGCACAGTGCAGGCCCAGGGAGCCAGGGCAGCAGCCACCGTGGGAGCATGgtaagtttccagcccagggagccaccagcccagggagccagggcagcaac Alignment from Exonerate_protein2genome GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCC-AGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tccatacaggtaaaaaaaccaccatattcatcaggttcctgtccacgcagGTGGTCTTAATTGGAGATGGGGTTGGTGGCATCCTTGGCTTTGATGCTCTCTGCCACAGTGCACAGTGCAGGCCCAGGGAGCCAGGGCAGCAGCCACCGTGGGAGCATGgtaagtttccagcccagggagccaccagcccagggagccagggcagcaac Alignment from Exonerate_coding2genome GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCC-AGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tccatacaggtaaaaaaaccaccatattcatcaggttcctgtccacgcagGTGGTCTTAATTGGAGATGGGGTTGGTGGCATCCTTGGCTTTGATGCTCTCTGCCACAGTGCACAGTGCAGGCCCAGGGAGCCAGGGCAGCAGCCACCGTGGGAGCATGgtaagtttccagcccagggagccaccagcccagggagccagggcagcaac Alignment from GeneWise GTGGTGCTGATCGGAGATGGTGTTGGTGGCATCCTGGGCTTTGATGCGCTCTGCCACAGTGCC-AGTGCAGGCCCAGGGAGTCGGGGCAGCAGCCGCCGTGGGAGCATG tccatacaggtaaaaaaaccaccatattcatcaggttcctgtccacgcagGTGGTCTTAATTGGAGATGGGGTTGGTGGCATCCTTGGCTTTGATGCTCTCTGCCACAGTGCACAGTGCAGGCCCAGGGAGCCAGGGCAGCAGCCACCGTGGGAGCATGgtaagtttccagcccagggagccaccagcccagggagccagggcagcaac #### Pitpnm1_ID315_12 --> 0 - 2 Original Alignment AACAATGAGATGCTC-TCCCCTGAAGTTGGT---CCAGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCT---GATCCTGATGGCTCTCAGAACag acaaatgggctaacaacatgcctcagtttccccgtcctccctggacacagATCACCGAGATACTCCTCACCTGAAGTTGGCTGTCCACTACGAGACCCACTGGCAGATGGGGTGGAAGTGCTGGGTCATGCTAGTCCAGAACCCTCAGCTCTACTAGCTCAATGCACCTTCAGCGACATGGCTAACCCTACTGATCCTGATGGCTCACAAAATaggtaagtagttcttccatactatgtagtaagtttttacagcagtcctggca Alignment from CESAR AACAATGAGATGCTC-TCCCCTGAAGTTGGT---CCAGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCT---GATCCTGATGGCTCTCAGAACag acaaatgggctaacaacatgcctcagtttccccgtcctccctggacacagATCACCGAGATACTCCTCACCTGAAGTTGGCTGTCCACTACGAGACCCACTGGCAGATGGGGTGGAAGTGCTGGGTCATGCTAGTCCAGAACCCTCAGCTCTACTAGCTCAATGCACCTTCAGCGACATGGCTAACCCTACTGATCCTGATGGCTCACAAAATaggtaagtagttcttccatactatgtagtaagtttttacagcagtcctggca Alignment from Spaln_aa2Genome -ATGCTCTCCCCTGAAGTTGGT---CCAGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCT---GATCCTGATGGCTCTCAGAACAG acaaatgggctaacaacatgcctcagtttccccgtcctccctggacacagatcaccgagATACTCCTCACCTGAAGTTGGCTGTCCACTACGAGACCCACTGGCAGATGGGGTGGAAGTGCTGGGTCATGCTAGTCCAGAACCCTCAGCTCTACTAGCTCAATGCACCTTCAGCGACATGGCTAACCCTACTGATCCTGATGGCTCACAAAATAGgtaagtagttcttccatactatgtagtaagtttttacagcagtcctggca Alignment from Spaln_nt2Genome AACAATGAGATGCTC-TCCCCTGAAGTTGG---TCCAGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATC---CTGATCCTGATGGCTCTCAGAACAG acaaatgggctaacaacatgcctcagtttccccgtcctccctggacacagATCACCGAGATACTCCTCACCTGAAGTTGGCTGTCCACTACGAGACCCACTGGCAGATGGGGTGGAAGTGCTGGGTCATGCTAGTCCAGAACCCTCAGCTCTACTAGCTCAATGCACCTTCAGCGACATGGCTAACCCTACTGATCCTGATGGCTCACAAAATAGgtaagtagttcttccatactatgtagtaagtttttacagcagtcctggca Alignment from Pairagon AACAATGAGATGCT-CTCCCCTGAAGTTG---GTCCAGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATC---CTGATCCTGATGGCTCTCAGAACAG acaaatgggctaacaacatgcctcagtttccccgtcctccctggacacagATCACCGAGATACTCCTCACCTGAAGTTGGCTGTCCACTACGAGACCCACTGGCAGATGGGGTGGAAGTGCTGGGTCATGCTAGTCCAGAACCCTCAGCTCTACTAGCTCAATGCACCTTCAGCGACATGGCTAACCCTACTGATCCTGATGGCTCACAAAATAGgtaagtagttcttccatactatgtagtaagtttttacagcagtcctggca Alignment from Exonerate_protein2genome GAACAATGAGATGCTCTCCCCTGAAGTTGGT---CCAGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCT---GATCCTGATGGCTCTCAGAACAG acaaatgggctaacaacatgcctcagtttccccgtcctccctggacacagATCACCGAGATACTCCTCACCTGAAGTTGGCTGTCCACTACGAGACCCACTGGCAGATGGGGTGGAAGTGCTGGGTCATGCTAGTCCAGAACCCTCAGCTCTACTAGCTCAATGCACCTTCAGCGACATGGCTAACCCTACTGATCCTGATGGCTCACAAAATAGgtaagtagttcttccatactatgtagtaagtttttacagcagtcctggca Alignment from Exonerate_coding2genome GAACAATGAGATGCTCTCCCCTGAAGTTGGT---CCAGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCT---GATCCTGATGGCTCTCAGAACAG acaaatgggctaacaacatgcctcagtttccccgtcctccctggacacagATCACCGAGATACTCCTCACCTGAAGTTGGCTGTCCACTACGAGACCCACTGGCAGATGGGGTGGAAGTGCTGGGTCATGCTAGTCCAGAACCCTCAGCTCTACTAGCTCAATGCACCTTCAGCGACATGGCTAACCCTACTGATCCTGATGGCTCACAAAATAGgtaagtagttcttccatactatgtagtaagtttttacagcagtcctggca Alignment from GeneWise AACAATGAGATGCTC-TCCCCTGAAGTTGGT---CCAGTACGGGACCCGCTGGCAGATGGGGTGGAGGTACTGGGTCGTGCTAGCCCAGAACCCTCAGCCCTACCTGCTCAGCGTACCTTCAGTGACATGGCCAATCCT---GATCCTGATGGCTCTCAGAACAG acaaatgggctaacaacatgcctcagtttccccgtcctccctggacacagATCACCGAGATACTCCTCACCTGAAGTTGGCTGTCCACTACGAGACCCACTGGCAGATGGGGTGGAAGTGCTGGGTCATGCTAGTCCAGAACCCTCAGCTCTACTAGCTCAATGCACCTTCAGCGACATGGCTAACCCTACTGATCCTGATGGCTCACAAAATAGgtaagtagttcttccatactatgtagtaagtttttacagcagtcctggca #### Pitpnm1_ID319_16 --> 2 - 0 Original Alignment tcCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGC-TACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gttgaagactgcagtctgctttggactctgtttgctttttcactaaaaagtcCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACTCTACTGCCCAGAAGCACTTACAGCCTTCCCCACAGTCACACTGCCCCACCTCTTTCATGCAAGCCTACTGGGAGTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgtgagtaaacccagggtgtggcccaacactgagctgagacaacagggact Alignment from CESAR tcCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGC-TACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gttgaagactgcagtctgctttggactctgtttgctttttcactaaaaagtcCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACTCTACTGCCCAGAAGCACTTACAGCCTTCCCCACAGTCACACTGCCCCACCTCTTTCATGCAAGCCTACTGGGAGTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgtgagtaaacccagggtgtggcccaacactgagctgagacaacagggact Alignment from Spaln_aa2Genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGC-TACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gttgaagactgcagtctgctttggactctgtttgctttttcactaaaaagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACTCTACTGCCCAGAAGCACTTACAGCCTTCCCCACAGTCACACTGCCCCACCTCTTTCATGCAAGCcTACTGGGAGTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgtgagtaaacccagggtgtggcccaacactgagctgagacaacagggact Alignment from Spaln_nt2Genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAG-CTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gttgaagactgcagtctgctttggactctgtttgctttttcactaaaaagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACTCTACTGCCCAGAAGCACTTACAGCCTTCCCCACAGTCACACTGCCCCACCTCTTTCATGCAAGCCTACTGGGAGTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgtgagtaaacccagggtgtggcccaacactgagctgagacaacagggact Alignment from Pairagon TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAG-CTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gttgaagactgcagtctgctttggactctgtttgctttttcactaaaaagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACTCTACTGCCCAGAAGCACTTACAGCCTTCCCCACAGTCACACTGCCCCACCTCTTTCATGCAAGCCTACTGGGAGTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgtgagtaaacccagggtgtggcccaacactgagctgagacaacagggact Alignment from Exonerate_protein2genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGC-TACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gttgaagactgcagtctgctttggactctgtttgctttttcactaaaaagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACTCTACTGCCCAGAAGCACTTACAGCCTTCCCCACAGTCACACTGCCCCACCTCTTTCATGCAAGCCTACTGGGAGTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgtgagtaaacccagggtgtggcccaacactgagctgagacaacagggact Alignment from Exonerate_coding2genome TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCCAGC-TACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gttgaagactgcagtctgctttggactctgtttgctttttcactaaaaagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACTCTACTGCCCAGAAGCACTTACAGCCTTCCCCACAGTCACACTGCCCCACCTCTTTCATGCAAGCCTACTGGGAGTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgtgagtaaacccagggtgtggcccaacactgagctgagacaacagggact Alignment from GeneWise TCCTGGACCGCTGGTGGGGAAACAAGCGGATCGACTATTCACTGTACTGCCCCGAGGCACTCACGGCCTTCCCCACGGTCACGCTGCCCCACCTCTTCCACGCC-AGCTACTGGGAATCAGCGGATGTAGTGGCCTTCATTCTGCGCCAG gttgaagactgcagtctgctttggactctgtttgctttttcactaaaaagTCCTGGACCGCTGGTGGGGAAACAAGCGCATTGATTATTCACTCTACTGCCCAGAAGCACTTACAGCCTTCCCCACAGTCACACTGCCCCACCTCTTTCATGCAAGCCTACTGGGAGTCAGCAGATGTAGTTGCCTTCATTCTGCGCCAGgtgagtaaacccagggtgtggcccaacactgagctgagacaacagggact #### Pitpnm1_ID320_17 --> 0 - 0 Original Alignment GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTC-CCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG gatggtcacatataggtggatcttgtattacctgctctctgcttttgcagATCATCGAAAAGGAGTGGCCACAATTAACTGAGTGTCAAGAACCATCCATCTACAGCCCTGCCTTCCCCTAAGGAAAAATGGCAGTGCAAGCGAACACAGGTCAAGATCCGGgtatgaatcttactgtcctgtactagctaaagtgtgtcccttggatgctt Alignment from CESAR GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCC-AGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG gatggtcacatataggtggatcttgtattacctgctctctgcttttgcagATCATCGAAAAGGAGTGGCCACAATTAACTGAGTGTCAAGAACCATCCATCTACAGCCCTGCCTTCCCCTAAGGAAAAATGGCAGTGCAAGCGAACACAGGTCAAGATCCGGgtatgaatcttactgtcctgtactagctaaagtgtgtcccttggatgctt Alignment from Spaln_aa2Genome GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTC-CCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG gatggtcacatataggtggatcttgtattacctgctctctgcttttgcagATCATCGAAAAGGAGTGGCCACAATTAACTGAGTGTCAAGAACCATCCATCTACAGCCCTGCCTTCcCCTAAGGAAAAATGGCAGTGCAAGCGAACACAGGTCAAGATCCGGgtatgaatcttactgtcctgtactagctaaagtgtgtcccttggatgctt Alignment from Spaln_nt2Genome GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTT-CCCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG gatggtcacatataggtggatcttgtattacctgctctctgcttttgcagATCATCGAAAAGGAGTGGCCACAATTAACTGAGTGTCAAGAACCATCCATCTACAGCCCTGCCTTCCCCTAAGGAAAAATGGCAGTGCAAGCGAACACAGGTCAAGATCCGGgtatgaatcttactgtcctgtactagctaaagtgtgtcccttggatgctt Alignment from Pairagon GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCC-AGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG gatggtcacatataggtggatcttgtattacctgctctctgcttttgcagATCATCGAAAAGGAGTGGCCACAATTAACTGAGTGTCAAGAACCATCCATCTACAGCCCTGCCTTCCCCTAAGGAAAAATGGCAGTGCAAGCGAACACAGGTCAAGATCCGGgtatgaatcttactgtcctgtactagctaaagtgtgtcccttggatgctt Alignment from Exonerate_protein2genome GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTC-CCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG gatggtcacatataggtggatcttgtattacctgctctctgcttttgcagATCATCGAAAAGGAGTGGCCACAATTAACTGAGTGTCAAGAACCATCCATCTACAGCCCTGCCTTCCCCTAAGGAAAAATGGCAGTGCAAGCGAACACAGGTCAAGATCCGGgtatgaatcttactgtcctgtactagctaaagtgtgtcccttggatgctt Alignment from Exonerate_coding2genome GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTC-CCCAGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG gatggtcacatataggtggatcttgtattacctgctctctgcttttgcagATCATCGAAAAGGAGTGGCCACAATTAACTGAGTGTCAAGAACCATCCATCTACAGCCCTGCCTTCCCCTAAGGAAAAATGGCAGTGCAAGCGAACACAGGTCAAGATCCGGgtatgaatcttactgtcctgtactagctaaagtgtgtcccttggatgctt Alignment from GeneWise GTCATTGAGAAGGAGCGGCCACAGCTGACAGAGTGTGAGGAGCCATCCATCTATAGCCCCGCCTTCCCC-AGGGAGAAGTGGCAGCGCAAACGCACACAGGTCAAGATCCGG gatggtcacatataggtggatcttgtattacctgctctctgcttttgcagATCATCGAAAAGGAGTGGCCACAATTAACTGAGTGTCAAGAACCATCCATCTACAGCCCTGCCTTCCCCTAAGGAAAAATGGCAGTGCAAGCGAACACAGGTCAAGATCCGGgtatgaatcttactgtcctgtactagctaaagtgtgtcccttggatgctt #### Pitpnm1_ID321_18 --> 0 - 0 Original Alignment AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGTCCC-CAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGC caacttactttgctttcagccttcttgtcctaacttcctctctcctgtagAATGTCACTTCTAACCACAGAGCAAGTGACACTGTGGTATGTGAGGGCCATCCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCATTGGATGTAGTTACACTCACCGGAGAAGAGgtaaatccttgtcaattttccccagGTTGATGTCTATGTCATGACACAGC Alignment from CESAR AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGT-CCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGC caacttactttgctttcagccttcttgtcctaacttcctctctcctgtagAATGTCACTTCTAACCACAGAGCAAGTGACACTGTGGTATGTGAGGGCCATCCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCATTGGATGTAGTTACACTCACCGGAGAAGAGgtctgactattgtgttttgttctagGTTGATGTCTATGTCATGACACAGC Alignment from Spaln_aa2Genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGT-CCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG-------------------------GTGGATGTCTACGTCATGACACAGC caacttactttgctttcagccttcttgtcctaacttcctctctcctgtagAATGTCACTTCTAACCACAGAGCAAGTGACACTGTGGTATGTGAGGGCCATcCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCATTGGATGTAGTTACACTCACCGGAGAAGAGGTAAATCCTTGTCAATTTTCCCCAgGTTGATGTCTATGTCATGACACAGC Alignment from Spaln_nt2Genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGT-CCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGA-GA------------------------AGGTGGATGTCTACGTCATGACACAGC caacttactttgctttcagccttcttgtcctaacttcctctctcctgtagAATGTCACTTCTAACCACAGAGCAAGTGACACTGTGGTATGTGAGGGCCATCCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCATTGGATGTAGTTACACTCACCGGAGAAGAGGTAAATCCTTGTCAATTTTCCCCAGGTTGATGTCTATGTCATGACACAGC Alignment from Pairagon AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGT-CCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG-------------------------GTGGATGTCTACGTCATGACACAGC caacttactttgctttcagccttcttgtcctaacttcctctctcctgtagAATGTCACTTCTAACCACAGAGCAAGTGACACTGTGGTATGTGAGGGCCATCCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCATTGGATGTAGTTACACTCACCGGAGAAGAGGTAAATCCTTGTCAATTTTCCCCAGGTTGATGTCTATGTCATGACACAGC Alignment from Exonerate_protein2genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGT-CCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGA caacttactttgctttcagccttcttgtcctaacttcctctctcctgtagAATGTCACTTCTAACCACAGAGCAAGTGACACTGTGGTATGTGAGGGCCATCCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCATTGGATGTAGTTACACTCACCGGAGAAGAGgtaaatccttgtcaattttccccaggttgatGTCTATGTC------ATGA Alignment from Exonerate_coding2genome AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGCCGT-CCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGA caacttactttgctttcagccttcttgtcctaacttcctctctcctgtagAATGTCACTTCTAACCACAGAGCAAGTGACACTGTGGTATGTGAGGGCCATCCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCATTGGATGTAGTTACACTCACCGGAGAAGAGgtaaatccttgtcaattttccccaggttgatGTCTATGTC------ATGA Alignment from GeneWise AACGTCACTTCCAACCACCGAGCGAGTGACACCGTGGTATGTGAGGGC-CGTCCCCAGGTGCTGAATGGGCGCTTCATGTATGGACCATTGGATGTGGTCACGCTCACTGGAGAGAAG GTGGATGTCTACGTCATGACACAGC caacttactttgctttcagccttcttgtcctaacttcctctctcctgtagAATGTCACTTCTAACCACAGAGCAAGTGACACTGTGGTATGTGAGGGCCATCCCCCAGGTGCTCAATGGCCATTTCATGTATGGACCATTGGATGTAGTTACACTCACCGGAGAAGAGgtaaatccttgtcaattttccccagGTTGATGTCTATGTCATGACACAGC #### Pitpnm1_ID323_20 --> 1 - 2 Original Alignment gGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTC-TCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCag gctcctgtgaaacaccaacttactctgtctgaaattgtttccaactgtaggGGTGACCACACATATGCTGAATGCTGCTTAACCATTGTGTCCAGAGGTGCAGAAGCGGTGGTTTTCAGCATCGATGGTTCTTTCACTGCGAGTGTCCTCAATCATGGGCAGTGACCCCAAGGTGCGAGCTGGAGCAGTAGATGTGGTGaggtaagtcctgcatagactgcagggccatatattgacctgccgtctgtgac Alignment from CESAR gGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTC-TCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCag gctcctgtgaaacaccaacttactctgtctgaaattgtttccaactgtaggGGTGACCACACATATGCTGAATGCTGCTTAACCATTGTGTCCAGAGGTGCAGAAGCGGTGGTTTTCAGCATCGATGGTTCTTTCACTGCGAGTGTCCTCAATCATGGGCAGTGACCCCAAGGTGCGAGCTGGAGCAGTAGATGTGGTGaggtaagtcctgcatagactgcagggccatatattgacctgccgtctgtgac Alignment from Spaln_aa2Genome GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTC-TCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gctcctgtgaaacaccaacttactctgtctgaaattgtttccaactgtagGGGTGACCACACATATGCTGAATGCTGCTTAACCATTGTGTCCAGAGGTGCAGAAGCGGTGGTTTTCAGCATCGATGGTTCTTTCACTGCGAGTGTCcTCAATCATGGGCAGTGACCCCAAGGTGCGAGCTGGAGCAGTAGATGTGGTGAGgtaagtcctgcatagactgcagggccatatattgacctgccgtctgtgac Alignment from Spaln_nt2Genome GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGT-CTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gctcctgtgaaacaccaacttactctgtctgaaattgtttccaactgtagGGGTGACCACACATATGCTGAATGCTGCTTAACCATTGTGTCCAGAGGTGCAGAAGCGGTGGTTTTCAGCATCGATGGTTCTTTCACTGCGAGTGTCCTCAATCATGGGCAGTGACCCCAAGGTGCGAGCTGGAGCAGTAGATGTGGTGAGgtaagtcctgcatagactgcagggccatatattgacctgccgtctgtgac Alignment from Pairagon GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGT-CTCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gctcctgtgaaacaccaacttactctgtctgaaattgtttccaactgtagGGGTGACCACACATATGCTGAATGCTGCTTAACCATTGTGTCCAGAGGTGCAGAAGCGGTGGTTTTCAGCATCGATGGTTCTTTCACTGCGAGTGTCCTCAATCATGGGCAGTGACCCCAAGGTGCGAGCTGGAGCAGTAGATGTGGTGAGgtaagtcctgcatagactgcagggccatatattgacctgccgtctgtgac Alignment from Exonerate_protein2genome gctcctgtgaaacaccaacttactctgtctgaaattgtttccaactgtaggggtgaccacacatatgctgaatgctgcttaaccattgtgtccagaggtgcagaagcggtggttttcagcatcgatggttctttcactgcgagtgtcctcaatcatgggcagtgaccccaaggtgcgagctggagcagtagatgtggtgaggtaagtcctgcatagactgcagggccatatattgacctgccgtctgtgac Alignment from Exonerate_coding2genome GGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTC-TCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gctcctgtgaaacaccaacttactctgtctgaaattgtttccaactgtaggGGTGACCACACATATGCTGAATGCTGCTTAACCATTGTGTCCAGAGGTGCAGAAGCGGTGGTTTTCAGCATCGATGGTTCTTTCACTGCGAGTGTCCTCAATCATGGGCAGTGACCCCAAGGTGCGAGCTGGAGCAGTAGATGTGGTGAGgtaagtcctgcatagactgcagggccatatattgacctgccgtctgtgac Alignment from GeneWise GGGAGACCACACCTATGCCGAGTGCTGTCTGACTGTGGTGTCCCGAGGCACAGAAGCTGTGGTCTTCAGCATCGATGGTTCTTTCACTGCCAGTGTC-TCTATCATGGGCAGCGACCCCAAGGTGCGCGCTGGCGCAGTGGACGTGGTCAG gctcctgtgaaacaccaacttactctgtctgaaattgtttccaactgtagGGGTGACCACACATATGCTGAATGCTGCTTAACCATTGTGTCCAGAGGTGCAGAAGCGGTGGTTTTCAGCATCGATGGTTCTTTCACTGCGAGTGTCCTCAATCATGGGCAGTGACCCCAAGGTGCGAGCTGGAGCAGTAGATGTGGTGAGgtaagtcctgcatagactgcagggccatatattgacctgccgtctgtgac #### Pitpnm1_ID324_21 --> 1 - 0 Original Alignment gCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTA-ACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG tcataacattcctcagtgtggataggaggtctcacttccctccctcccaggCACTGGCAGGACTCTGACTACTTGATTGTATATGCACACTGGTCGGCCAGATATGCAAAAACACCGTGTTGTGGCCTGGTTGTCACAACATACTTTCCCTCATGGAGTTGATTCATTCTGTGATGTCCTTATGCATGACCCATTGCGCCAGAAAACCATGTTTTTGCAGAGCCTGGTACAGGAGgtgagttgacttggtcaggacctgtcctgcttgggtctaacccagtttga Alignment from CESAR gCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTA-ACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG tcataacattcctcagtgtggataggaggtctcacttccctccctcccaggCACTGGCAGGACTCTGACTACTTGATTGTATATGCACACTGGTCGGCCAGATATGCAAAAACACCGTGTTGTGGCCTGGTTGTCACAACATACTTTCCCTCATGGAGTTGATTCATTCTGTGATGTCCTTATGCATGACCCATTGCGCCAGAAAACCATGTTTTTGCAGAGCCTGGTACAGGAGgtgagttgacttggtcaggacctgtcctgcttgggtctaacccagtttga Alignment from Spaln_aa2Genome GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTA-ACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG tcataacattcctcagtgtggataggaggtctcacttccctccctcccagGCACTGGCAGGACTCTGACTACTTGATTGTATATGCAcACTGGTCGGCCAGATATGCAAAAACACCGTGTTGTGGCCTGGTTGTCACAACATACTTTCCCTCATGGAGTTGATTCATTCTGTGATGTCCTTATGCATGACCCATTGCGCCAGAAAACCATGTTTTTGCAGAGCCTGGTACAGGAGgtgagttgacttggtcaggacctgtcctgcttgggtctaacccagtttga Alignment from Spaln_nt2Genome GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTA-ACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG tcataacattcctcagtgtggataggaggtctcacttccctccctcccagGCACTGGCAGGACTCTGACTACTTGATTGTATATGCACACTGGTCGGCCAGATATGCAAAAACACCGTGTTGTGGCCTGGTTGTCACAACATACTTTCCCTCATGGAGTTGATTCATTCTGTGATGTCCTTATGCATGACCCATTGCGCCAGAAAACCATGTTTTTGCAGAGCCTGGTACAGGAGgtgagttgacttggtcaggacctgtcctgcttgggtctaacccagtttga Alignment from Pairagon GCACTGGCAGGACTCTGGCTACTTGATTGTGTATGTA-ACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG tcataacattcctcagtgtggataggaggtctcacttccctccctcccagGCACTGGCAGGACTCTGACTACTTGATTGTATATGCACACTGGTCGGCCAGATATGCAAAAACACCGTGTTGTGGCCTGGTTGTCACAACATACTTTCCCTCATGGAGTTGATTCATTCTGTGATGTCCTTATGCATGACCCATTGCGCCAGAAAACCATGTTTTTGCAGAGCCTGGTACAGGAGgtgagttgacttggtcaggacctgtcctgcttgggtctaacccagtttga Alignment from Exonerate_protein2genome tcataacattcctcagtgtggataggaggtctcacttccctccctcccaggcactggcaggactctgactacttgattgtatatgcacactggtcggccagatatgcaaaaacaccgtgttgtggcctggttgtcacaacatactttccctcatggagttgattcattctgtgatgtccttatgcatgacccattgcgccagaaaaccatgtttttgcagagcctggtacaggaggtgagttgacttggtcaggacctgtcctgcttgggtctaacccagtttga Alignment from Exonerate_coding2genome tcataacattcctcagtgtggataggaggtctcacttccctccctcccaggcactggcaggactctgactacttgattgtatatgcacactggtcggccagatatgcaaaaacaccgtgttgtggcctggttgtcacaacatactttccctcatggagttgattcattctgtgatgtccttatgcatgacccattgcgccagaaaaccatgtttttgcagagcctggtacaggaggtgagttgacttggtcaggacctgtcctgcttgggtctaacccagtttga Alignment from GeneWise GCACTGGCAGGACTCTGGCTACTTGATTGTGTAT-GTAACTGGCCGGCCTGACATGCAAAAGCACCGTGTAGTGGCCTGGCTGTCGCAACACAACTTCCCCCATGGTGTTGTCTCCTTCTGTGATGGCCTCACCCACGACCCGCTGCGGCAGAAAGCCATGTTTCTGCAGAGCCTGGTGCAAGAG tcataacattcctcagtgtggataggaggtctcacttccctccctcccagGCACTGGCAGGACTCTGACTACTTGATTGTATATGCACACTGGTCGGCCAGATATGCAAAAACACCGTGTTGTGGCCTGGTTGTCACAACATACTTTCCCTCATGGAGTTGATTCATTCTGTGATGTCCTTATGCATGACCCATTGCGCCAGAAAACCATGTTTTTGCAGAGCCTGGTACAGGAGgtgagttgacttggtcaggacctgtcctgcttgggtctaacccagtttga #### Pitpnm1_ID325_22 --> 0 - 0 Original Alignment GTAGAACTGAACATCGTGGCTGGATATGGGTCACCA-AAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttgggaaaatgactctgttaccctacctctgtgcccttagGTTGATCTAAACATCATAGCTGGATATGGGTCCCCACAAAGATGTAGCAGTTTATGCAGCATTAGGACTCTCTCCAAGTCATACCTATATTATTGGCCGTGGCATCCGTACATTGCAGGCCCAGTGCCAGgtaagtgatttaaggaagagtagccaacgtagtccccagtcaagtgtaaa Alignment from CESAR GTAGAACTGAACATCGTGGCTGGATATGGGTCACCA-AAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttgggaaaatgactctgttaccctacctctgtgcccttagGTTGATCTAAACATCATAGCTGGATATGGGTCCCCACAAAGATGTAGCAGTTTATGCAGCATTAGGACTCTCTCCAAGTCATACCTATATTATTGGCCGTGGCATCCGTACATTGCAGGCCCAGTGCCAGgtaagtgatttaaggaagagtagccaacgtagtccccagtcaagtgtaaa Alignment from Spaln_aa2Genome GTAGAACTGAACATCGTGGCTGGATATGGGTCACCA-AAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttgggaaaatgactctgttaccctacctctgtgcccttagGTTGATCTAAACATCATAGCTGGATATGGGTCCCCAcAAAGATGTAGCAGTTTATGCAGCATTAGGACTCTCTCCAAGTCATACCTATATTATTGGCCGTGGCATCCGTACATTGCAGGCCCAGTGCCAGgtaagtgatttaaggaagagtagccaacgtagtccccagtcaagtgtaaa Alignment from Spaln_nt2Genome GTAGAACTGAACATCGTGGCTGGATATGGGTCACCA-AAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttgggaaaatgactctgttaccctacctctgtgcccttagGTTGATCTAAACATCATAGCTGGATATGGGTCCCCACAAAGATGTAGCAGTTTATGCAGCATTAGGACTCTCTCCAAGTCATACCTATATTATTGGCCGTGGCATCCGTACATTGCAGGCCCAGTGCCAGgtaagtgatttaaggaagagtagccaacgtagtccccagtcaagtgtaaa Alignment from Pairagon GTAGAACTGAACATCGTGGCTGGATATGGGTCACCA-AAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttgggaaaatgactctgttaccctacctctgtgcccttagGTTGATCTAAACATCATAGCTGGATATGGGTCCCCACAAAGATGTAGCAGTTTATGCAGCATTAGGACTCTCTCCAAGTCATACCTATATTATTGGCCGTGGCATCCGTACATTGCAGGCCCAGTGCCAGgtaagtgatttaaggaagagtagccaacgtagtccccagtcaagtgtaaa Alignment from Exonerate_protein2genome tgtgacatccttgggaaaatgactctgttaccctacctctgtgcccttaggttgatctaaacatcatagctggatatgggtccccacaaagatgtagcagtttatgcagcattaggactctctccaagtcatacctatattattggccgtggcatccgtacattgcaggcccagtgccaggtaagtgatttaaggaagagtagccaacgtagtccccagtcaagtgtaaa Alignment from Exonerate_coding2genome tgtgacatccttgggaaaatgactctgttaccctacctctgtgcccttaggttgatctaaacatcatagctggatatgggtccccacaaagatgtagcagtttatgcagcattaggactctctccaagtcatacctatattattggccgtggcatccgtacattgcaggcccagtgccaggtaagtgatttaaggaagagtagccaacgtagtccccagtcaagtgtaaa Alignment from GeneWise GTAGAACTGAACATCGTGGCTGGATATGGGTCACCA-AAAGATGTGGCAGTGTATGCAGCACTGGGGCTCTCTCCGAGCCAGACCTACATTGTTGGCCGTGCTGTGCGCAAACTGCAGGCACAGTGTCAG tgtgacatccttgggaaaatgactctgttaccctacctctgtgcccttagGTTGATCTAAACATCATAGCTGGATATGGGTCCCCACAAAGATGTAGCAGTTTATGCAGCATTAGGACTCTCTCCAAGTCATACCTATATTATTGGCCGTGGCATCCGTACATTGCAGGCCCAGTGCCAGgtaagtgatttaaggaagagtagccaacgtagtccccagtcaagtgtaaa #### Pkd2l1_ID8958_10 --> 0 - 0 Original Alignment AACATGTTCCTGGCCATCATCAACGACACATACTCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTT-TCTGACTTCCTGAAACAG gatgaatggagagcttcagagactactgcattctcctctttgccccacagAATATGTTCCTGGCCATTATCAATGACACATACTCTGAAGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGCTGCAGCTTCTCTGACTTCCTGAAACAGgtgagagccctgagctctgtataggtaccatacaggatcctcagttttgg Alignment from CESAR AACATGTTCCTGGCCATCATCAACGACACATACTCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTT-TCTGACTTCCTGAAACAG gatgaatggagagcttcagagactactgcattctcctctttgccccacagAATATGTTCCTGGCCATTATCAATGACACATACTCTGAAGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGCTGCAGCTTCTCTGACTTCCTGAAACAGgtgagagccctgagctctgtataggtaccatacaggatcctcagttttgg Alignment from Spaln_aa2Genome AACATGTTCCTGGCCATCATCAACGACACATACTCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTT-TCTGACTTCCTGAAACAG gatgaatggagagcttcagagactactgcattctcctctttgccccacagAATATGTTCCTGGCCATTATCAATGACACATACTCTGAAGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGCTGCAGCTTcTCTGACTTCCTGAAACAGgtgagagccctgagctctgtataggtaccatacaggatcctcagttttgg Alignment from Spaln_nt2Genome AACATGTTCCTGGCCATCATCAACGACACATACTCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTT-TCTGACTTCCTGAAACAG gatgaatggagagcttcagagactactgcattctcctctttgccccacagAATATGTTCCTGGCCATTATCAATGACACATACTCTGAAGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGCTGCAGCTTCTCTGACTTCCTGAAACAGgtgagagccctgagctctgtataggtaccatacaggatcctcagttttgg Alignment from Pairagon AACATGTTCCTGGCCATCATCAACGACACATACTCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTT-TCTGACTTCCTGAAACAG gatgaatggagagcttcagagactactgcattctcctctttgccccacagAATATGTTCCTGGCCATTATCAATGACACATACTCTGAAGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGCTGCAGCTTCTCTGACTTCCTGAAACAGgtgagagccctgagctctgtataggtaccatacaggatcctcagttttgg Alignment from Exonerate_protein2genome AACATGTTCCTGGCCATCATCAACGACACATACTCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTT-TCTGACTTCCTGAAACAG gatgaatggagagcttcagagactactgcattctcctctttgccccacagAATATGTTCCTGGCCATTATCAATGACACATACTCTGAAGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGCTGCAGCTTCTCTGACTTCCTGAAACAGgtgagagccctgagctctgtataggtaccatacaggatcctcagttttgg Alignment from Exonerate_coding2genome AACATGTTCCTGGCCATCATCAACGACACATACTCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTT-TCTGACTTCCTGAAACAG gatgaatggagagcttcagagactactgcattctcctctttgccccacagAATATGTTCCTGGCCATTATCAATGACACATACTCTGAAGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGCTGCAGCTTCTCTGACTTCCTGAAACAGgtgagagccctgagctctgtataggtaccatacaggatcctcagttttgg Alignment from GeneWise AACATGTTCCTGGCCATCATCAACGACACATACTCCGAGGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGTTGCAGCTT-TCTGACTTCCTGAAACAG gatgaatggagagcttcagagactactgcattctcctctttgccccacagAATATGTTCCTGGCCATTATCAATGACACATACTCTGAAGTCAAGGAGGAGCTGGCTGGCCAGAAGGATCAGCTGCAGCTTCTCTGACTTCCTGAAACAGgtgagagccctgagctctgtataggtaccatacaggatcctcagttttgg #### Plcb3_ID1901_30 --> 0 - 0 Original Alignment CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAG-GAAGAGGAACCCAAG tttcccaatcattgctctgccttcagccatttgctgtgtatggtccttagTTGGGGGAGGCCCAAAAACAGCAGCATGAACGGCTAGTGGCAGGACAACAGCAAGTCCTCCAGCAATTAGAGCGAAGAGAAACCCAAGgtaagtcctggcggggttgcatatacaggccaataggggagcaggtcaac Alignment from CESAR CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAG-GAAGAGGAACCCAAG tttcccaatcattgctctgccttcagccatttgctgtgtatggtccttagTTGGGGGAGGCCCAAAAACAGCAGCATGAACGGCTAGTGGCAGGACAACAGCAAGTCCTCCAGCAATTAGAGCGAAGAGAAACCCAAGgtaagtcctggcggggttgcatatacaggccaataggggagcaggtcaac Alignment from Spaln_aa2Genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAG-GAAGAGGAACCCAAG tttcccaatcattgctctgccttcagccatttgctgtgtatggtccttagTTGGGGGAGGCCCAAAAACAGCAGCATGAACGGCTAGTGGCAGGACAACAGCAAGTCCTCCAGCAATTAGAGcGAAGAGAAACCCAAGgtaagtcctggcggggttgcatatacaggccaataggggagcaggtcaac Alignment from Spaln_nt2Genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAG-GAAGAGGAACCCAAG tttcccaatcattgctctgccttcagccatttgctgtgtatggtccttagTTGGGGGAGGCCCAAAAACAGCAGCATGAACGGCTAGTGGCAGGACAACAGCAAGTCCTCCAGCAATTAGAGCGAAGAGAAACCCAAGgtaagtcctggcggggttgcatatacaggccaataggggagcaggtcaac Alignment from Pairagon CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAG-GAAGAGGAACCCAAG tttcccaatcattgctctgccttcagccatttgctgtgtatggtccttagTTGGGGGAGGCCCAAAAACAGCAGCATGAACGGCTAGTGGCAGGACAACAGCAAGTCCTCCAGCAATTAGAGCGAAGAGAAACCCAAGgtaagtcctggcggggttgcatatacaggccaataggggagcaggtcaac Alignment from Exonerate_protein2genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAG-GAAGAGGAACCCAAG tttcccaatcattgctctgccttcagccatttgctgtgtatggtccttagTTGGGGGAGGCCCAAAAACAGCAGCATGAACGGCTAGTGGCAGGACAACAGCAAGTCCTCCAGCAATTAGAGCGAAGAGAAACCCAAGgtaagtcctggcggggttgcatatacaggccaataggggagcaggtcaac Alignment from Exonerate_coding2genome CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAG-GAAGAGGAACCCAAG tttcccaatcattgctctgccttcagccatttgctgtgtatggtccttagTTGGGGGAGGCCCAAAAACAGCAGCATGAACGGCTAGTGGCAGGACAACAGCAAGTCCTCCAGCAATTAGAGCGAAGAGAAACCCAAGgtaagtcctggcggggttgcatatacaggccaataggggagcaggtcaac Alignment from GeneWise CTGGAAGAGGCCCAGAAGCAGCGCCATGAACGCCTGGTGGCAGGGCAACAGCAAGTCCTCCAGCAGCTAGAG-GAAGAGGAACCCAAG tttcccaatcattgctctgccttcagccatttgctgtgtatggtccttagTTGGGGGAGGCCCAAAAACAGCAGCATGAACGGCTAGTGGCAGGACAACAGCAAGTCCTCCAGCAATTAGAGCGAAGAGAAACCCAAGgtaagtcctggcggggttgcatatacaggccaataggggagcaggtcaac #### Plcb3_ID1905_26 --> 1 - 0 Original Alignment gGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTC-CAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG GCTCA ttatgacaagttgtgtcagtcagagagtggtttctcaatttggattgcaggGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAAGCCAAGCAGTATAGGGAGTTCCCAGAACCAAAAAGCACAGAGCTTGTTGGAGCTGAGAGAAGCCCAGGGTGATGTGGAAACCAACCGCAAGCTGGAACATCTACGACAGgtaaccgatcggtggggggcggtccaggtctcttctgtcctgcagGCGCA Alignment from CESAR gGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTC-CAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG GCTCA ttatgacaagttgtgtcagtcagagagtggtttctcaatttggattgcaggGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAAGCCAAGCAGTATAGGGAGTTCCCAGAACCAAAAAGCACAGAGCTTGTTGGAGCTGAGAGAAGCCCAGGGTGATGTGGAAACCAACCGCAAGCTGGAACATCTACGACAGgtaaccgatcggtggggggcggtttttattgtcctttcttcacagGCGCA Alignment from Spaln_aa2Genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTC-CAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG GCTCA ttatgacaagttgtgtcagtcagagagtggtttctcaatttggattgcagGGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAAGCCAAGCAGTATAGGGAGTTCcCAGAACCAAAAAGCACAGAGCTTGTTGGAGCTGAGAGAAGCCCAGGGTGATGTGGAAACCAACCGCAAGCTGGAACATCTACGACAGgtaaccgatcggtggggggcggtccaggtctcttctgtcctgcagGCGCA Alignment from Spaln_nt2Genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTCC-AGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG GCTCA ttatgacaagttgtgtcagtcagagagtggtttctcaatttggattgcagGGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAAGCCAAGCAGTATAGGGAGTTCCCAGAACCAAAAAGCACAGAGCTTGTTGGAGCTGAGAGAAGCCCAGGGTGATGTGGAAACCAACCGCAAGCTGGAACATCTACGACAGgtaaccgatcggtggggggcggtccaggtctcttctgtcctgcagGCGCA Alignment from Pairagon GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTT-CCAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG GCTCA ttatgacaagttgtgtcagtcagagagtggtttctcaatttggattgcagGGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAAGCCAAGCAGTATAGGGAGTTCCCAGAACCAAAAAGCACAGAGCTTGTTGGAGCTGAGAGAAGCCCAGGGTGATGTGGAAACCAACCGCAAGCTGGAACATCTACGACAGgtaaccgatcggtggggggcggtccaggtctcttctgtcctgcagGCGCA Alignment from Exonerate_protein2genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTC-CAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG GCTCA ttatgacaagttgtgtcagtcagagagtggtttctcaatttggattgcagGGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAAGCCAAGCAGTATAGGGAGTTCCCAGAACCAAAAAGCACAGAGCTTGTTGGAGCTGAGAGAAGCCCAGGGTGATGTGGAAACCAACCGCAAGCTGGAACATCTACGACAGgtaaccgatcggtggggggcggtccaggtctcttctgtcctgcagGCGCA Alignment from Exonerate_coding2genome GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTC-CAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGACAG GCTCA ttatgacaagttgtgtcagtcagagagtggtttctcaatttggattgcagGGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAAGCCAAGCAGTATAGGGAGTTCCCAGAACCAAAAAGCACAGAGCTTGTTGGAGCTGAGAGAAGCCCAGGGTGATGTGGAAACCAACCGCAAGCTGGAACATCTACGACAGgtaaccgatcggtggggggcggtccaggtctcttctgtcctgcagGCGCA Alignment from GeneWise GGGCAAGGCCACCAACTCGGAGGACGTGAAGGAGGAAGAGGAGGCCAAACAGTATCGAGAGTTC-CAGAACCGACAAGTACAGAGCCTGTTGGAGCTGAGGGAAGCCCAGGCAGATGTGGAGACCAAGCGGAAGCTGGAGCATCTACGA---------------------------------------------CAGGCTCA ttatgacaagttgtgtcagtcagagagtggtttctcaatttggattgcagGGGCAAGGCCTCCAACTCAGAGGATGTGAAGGATGAAGAAGAAGCCAAGCAGTATAGGGAGTTCCCAGAACCAAAAAGCACAGAGCTTGTTGGAGCTGAGAGAAGCCCAGGGTGATGTGGAAACCAACCGCAAGCTGGAACATCTACGACAGGTAACCGATCGGTGGGGGGCGGTCCAGGTCTCTTCTGTCCTGCAGGCGCA #### Plcb3_ID1912_19 --> 0 - 0 Original Alignment GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGA-CGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG gatttgaaatccctctcattaacttccaaaagctatcttgtgtcccctagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGACTGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCTTTTGACTTCCCCAAGgtaaggcctaggaacggctgatacaccaagtctatgttccgatagcagtg Alignment from CESAR GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGC-AAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG gatttgaaatccctctcattaacttccaaaagctatcttgtgtcccctagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGACTGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCTTTTGACTTCCCCAAGgtaaggcctaggaacggctgatacaccaagtctatgttccgatagcagtg Alignment from Spaln_aa2Genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGA-CGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG gatttgaaatccctctcattaacttccaaaagctatcttgtgtcccctagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGAcTGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCTTTTGACTTCCCCAAGgtaaggcctaggaacggctgatacaccaagtctatgttccgatagcagtg Alignment from Spaln_nt2Genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGAC-GCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG gatttgaaatccctctcattaacttccaaaagctatcttgtgtcccctagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGACTGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCTTTTGACTTCCCCAAGgtaaggcctaggaacggctgatacaccaagtctatgttccgatagcagtg Alignment from Pairagon GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGAC-GCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG gatttgaaatccctctcattaacttccaaaagctatcttgtgtcccctagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGACTGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCTTTTGACTTCCCCAAGgtaaggcctaggaacggctgatacaccaagtctatgttccgatagcagtg Alignment from Exonerate_protein2genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGC-AAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG gatttgaaatccctctcattaacttccaaaagctatcttgtgtcccctagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGACTGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCTTTTGACTTCCCCAAGgtaaggcctaggaacggctgatacaccaagtctatgttccgatagcagtg Alignment from Exonerate_coding2genome GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGACGC-AAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG gatttgaaatccctctcattaacttccaaaagctatcttgtgtcccctagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGACTGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCTTTTGACTTCCCCAAGgtaaggcctaggaacggctgatacaccaagtctatgttccgatagcagtg Alignment from GeneWise GTGATTTCGGGGCAGTTCCTGTCTGACAAGAAGGTGGGCATCTACGTCGAGGTGGACATGTTTGGCCTCCCAGTTGACACAAGA-CGCAAATATCGTACCCGGACATCCCAGGGGAACTCATTCAACCCTGTGTGGGACGAGGAACCCTTTGACTTCCCCAAG gatttgaaatccctctcattaacttccaaaagctatcttgtgtcccctagGTGATTCCAGGGCAATTCCTATCTCACAAGAAAGTGGGTATCTATGTTGAGGTGGACATGTTTGGCCTTCCAGTGGATACAAGACTGTAAATATCGTACCCGGACATCTCAGGGAAACTCATTCAACCCTGTATGGGAAGAAGAACCTTTTGACTTCCCCAAGgtaaggcctaggaacggctgatacaccaagtctatgttccgatagcagtg #### Plcb3_ID1913_18 --> 2 - 0 Original Alignment atTTGCCAATGCAGCTCAAC-GCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG ggtacaatgtatgatgatctctggctgctagctgctcgtccctcttccagatTTGCCAATGCAGCTCAATCGCAGGTGTTGTTGAGTACAATGGGCGCAGCGGGTATTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGGCCTAGTGGCCAATGCATTGAGGGTCAAGgtcagtgcgtaagggttttggcaaagggttttttgaaccccctcccacta Alignment from CESAR atTTGCCAATGCAGCTCAAC-GCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG ggtacaatgtatgatgatctctggctgctagctgctcgtccctcttccagatTTGCCAATGCAGCTCAATCGCAGGTGTTGTTGAGTACAATGGGCGCAGCGGGTATTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGGCCTAGTGGCCAATGCATTGAGGGTCAAGgtcagtgcgtaagggttttggcaaagggttttttgaaccccctcccacta Alignment from Spaln_aa2Genome ATTTGCCAATGCAGCTCAAC-GCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG ggtacaatgtatgatgatctctggctgctagctgctcgtccctcttccagATTTGCCAATGCAGCTCAATcGCAGGTGTTGTTGAGTACAATGGGCGCAGCGGGTATTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGGCCTAGTGGCCAATGCATTGAGGGTCAAGgtcagtgcgtaagggttttggcaaagggttttttgaaccccctcccacta Alignment from Spaln_nt2Genome ATTTGCCAATGCAGCTCAA-CGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG ggtacaatgtatgatgatctctggctgctagctgctcgtccctcttccagATTTGCCAATGCAGCTCAATCGCAGGTGTTGTTGAGTACAATGGGCGCAGCGGGTATTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGGCCTAGTGGCCAATGCATTGAGGGTCAAGgtcagtgcgtaagggttttggcaaagggttttttgaaccccctcccacta Alignment from Pairagon ATTTGCCAATGCAGCTCAA-CGCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG ggtacaatgtatgatgatctctggctgctagctgctcgtccctcttccagATTTGCCAATGCAGCTCAATCGCAGGTGTTGTTGAGTACAATGGGCGCAGCGGGTATTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGGCCTAGTGGCCAATGCATTGAGGGTCAAGgtcagtgcgtaagggttttggcaaagggttttttgaaccccctcccacta Alignment from Exonerate_protein2genome ATTTGCCAATGCAGCTCAAC-GCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG ggtacaatgtatgatgatctctggctgctagctgctcgtccctcttccagATTTGCCAATGCAGCTCAATCGCAGGTGTTGTTGAGTACAATGGGCGCAGCGGGTATTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGGCCTAGTGGCCAATGCATTGAGGGTCAAGgtcagtgcgtaagggttttggcaaagggttttttgaaccccctcccacta Alignment from Exonerate_coding2genome ATTTGCCAATGCAGCTCAAC-GCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG ggtacaatgtatgatgatctctggctgctagctgctcgtccctcttccagATTTGCCAATGCAGCTCAATCGCAGGTGTTGTTGAGTACAATGGGCGCAGCGGGTATTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGGCCTAGTGGCCAATGCATTGAGGGTCAAGgtcagtgcgtaagggttttggcaaagggttttttgaaccccctcccacta Alignment from GeneWise ATTTGCCAATGCAGCTCAAC-GCAGGCGTGTTTGAGTACAATGGGCGCAGCGGGTACTTGCTCAAGCCCGAGTTTATGCGGCGGCCGGACAAGTCTTTTGATCCCTTCACTGAGGTCATCGTAGATGGCATAGTGGCCAACGCCTTGCGGGTCAAG ggtacaatgtatgatgatctctggctgctagctgctcgtccctcttccagATTTGCCAATGCAGCTCAATCGCAGGTGTTGTTGAGTACAATGGGCGCAGCGGGTATTTGCTCAAGCCTGAGTTTATGCGGCGGCCGGACAAATCTTTTGAACCTTTCACTGAGGTCATCGTAGATGGCCTAGTGGCCAATGCATTGAGGGTCAAGgtcagtgcgtaagggttttggcaaagggttttttgaaccccctcccacta #### Plcb3_ID1915_16 --> 2 - 2 Original Alignment aaAGGAACAAGTGCTTCGAGATG-TCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGga catggcaataggtctgtcaggtgattgctgtctgctggttctcttcccagaaAGGAACAAGTGTTTTAGAATGCTCATCCTTTGTGGAAACCAAAGCA------------ACCAAGAGCCCTATGGAGTTAGTGgagtagcttcaccaatggcatggctggtgtagtgtagtgccaggaggcttac Alignment from CESAR aaAGGAACAAGTGCTTCGAGATG-TCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGga catggcaataggtctgtcaggtgattgctgtctgctggttctcttcccagaaAGGAACAAGTGTTTTAGAATGCTCATCCTTTGTGGAAACCAAAGCA------------ACCAAGAGCCCTATGGAGTTAGTGgagtagcttcaccaatggcatggctggtgtagtgtagtgccaggaggcttac Alignment from Spaln_aa2Genome AAAGGAACAAGTGCTTCGAGATG-TCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA catggcaataggtctgtcaggtgattgctgtctgctggttctcttcccagAAAGGAACAAGTGTTTTAGAATGcTCATCCTTTGTGGAAACCAAAGCA------------ACCAAGAGCCCTATGGAGTTAGTGGAgtagcttcaccaatggcatggctggtgtagtgtagtgccaggaggcttac Alignment from Spaln_nt2Genome AAAGGAACAAGTGCTTCGAGATG-TCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA catggcaataggtctgtcaggtgattgctgtctgctggttctcttcccagAAAGGAACAAGTGTTTTAGAATGCTCATCCTTTGTGGAAACCAAAGCA------------ACCAAGAGCCCTATGGAGTTAGTGGAgtagcttcaccaatggcatggctggtgtagtgtagtgccaggaggcttac Alignment from Pairagon AAAGGAACAAGTGCTTCGAGATG-TCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA catggcaataggtctgtcaggtgattgctgtctgctggttctcttcccagAAAGGAACAAGTGTTTTAGAATGCTCATCCTTTGTGGAAACCAAAGCA------------ACCAAGAGCCCTATGGAGTTAGTGGAgtagcttcaccaatggcatggctggtgtagtgtagtgccaggaggcttac Alignment from Exonerate_protein2genome AAAGGAACAAGTGCTTCGAGATG-TCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA catggcaataggtctgtcaggtgattgctgtctgctggttctcttcccagAAAGGAACAAGTGTTTTAGAATGCTCATCCTTTGTGGAAACCAAAGCA------------ACCAAGAGCCCTATGGAGTTAGTGGAgtagcttcaccaatggcatggctggtgtagtgtagtgccaggaggcttac Alignment from Exonerate_coding2genome catggcaataggtctgtcaggtgattgctgtctgctggttctcttcccagaaaggaacaagtgttttagaatgctcatcctttgtggaaaccaaagcaaccaagagccctatggagttagtggagtagcttcaccaatggcatggctggtgtagtgtagtgccaggaggcttac Alignment from GeneWise AAAGGAACAAGTGCTTCGAGATG-TCATCCTTCGTGGAGACCAAGGCAATGGAGCAACTGACCAAGAGTCCTATGGAGTTTGTGGA catggcaataggtctgtcaggtgattgctgtctgctggttctcttcccagAAAGGAACAAGTGTTTTAGAATGCTCATCCTTTGTGGAAACCAAAGCA------------ACCAAGAGCCCTATGGAGTTAGTGGAgtagcttcaccaatggcatggctggtgtagtgtagtgccaggaggcttac #### Plcb3_ID1924_7 --> 1 - 2 Original Alignment cATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGT-GGCCTCAACTTCAACCGAgt ttctgctgcctgtctaaccatttgaacttggcctttccttgttgaggtagcATTCTGAAGATGTTCTCAGCAGATAAGAAGCGGGTAGAGAATGCGCTGGAGTCCTGTCGGTCTCAACTTAAACCGGgtgtaagagtcagggccagggtgcaagttgggtcagattggcttttgcaatt Alignment from CESAR cATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGT-GGCCTCAACTTCAACCGAgt ttctgctgcctgtctaaccatttgaacttggcctttccttgttgaggtagcATTCTGAAGATGTTCTCAGCAGATAAGAAGCGGGTAGAGAATGCGCTGGAGTCCTGTCGGTCTCAACTTAAACCGGgtgtaagagtcagggccagggtgcaagttgggtcagattggcttttgcaatt Alignment from Spaln_aa2Genome CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGT-GGCCTCAACTTCAACCGAGT ttctgctgcctgtctaaccatttgaacttggcctttccttgttgaggtagCATTCTGAAGATGTTCTCAGCAGATAAGAAGCGGGTAGAGAATGCGCTGGAGTCCTGTcGGTCTCAACTTAAACCGGGTgtaagagtcagggccagggtgcaagttgggtcagattggcttttgcaatt Alignment from Spaln_nt2Genome CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGT-GGCCTCAACTTCAACCGAGT ttctgctgcctgtctaaccatttgaacttggcctttccttgttgaggtagCATTCTGAAGATGTTCTCAGCAGATAAGAAGCGGGTAGAGAATGCGCTGGAGTCCTGTCGGTCTCAACTTAAACCGGGTgtaagagtcagggccagggtgcaagttgggtcagattggcttttgcaatt Alignment from Pairagon CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGT-GGCCTCAACTTCAACCGAGT ttctgctgcctgtctaaccatttgaacttggcctttccttgttgaggtagCATTCTGAAGATGTTCTCAGCAGATAAGAAGCGGGTAGAGAATGCGCTGGAGTCCTGTCGGTCTCAACTTAAACCGGGTgtaagagtcagggccagggtgcaagttgggtcagattggcttttgcaatt Alignment from Exonerate_protein2genome CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGT-GGCCTCAACTTCAACCGAGT ttctgctgcctgtctaaccatttgaacttggcctttccttgttgaggtagCATTCTGAAGATGTTCTCAGCAGATAAGAAGCGGGTAGAGAATGCGCTGGAGTCCTGTCGGTCTCAACTTAAACCGGGTgtaagagtcagggccagggtgcaagttgggtcagattggcttttgcaatt Alignment from Exonerate_coding2genome ttctgctgcctgtctaaccatttgaacttggcctttccttgttgaggtagcattctgaagatgttctcagcagataagaagcgggtagagaatgcgctggagtcctgtcggtctcaacttaaaccgggtgtaagagtcagggccagggtgcaagttgggtcagattggcttttgcaatt Alignment from GeneWise CATTCTGAAGATGTTCTCGGCGGACAAGAAGCGGGTGGAGACGGCGCTGGAGTCCTGT-GGCCTCAACTTCAACCGAGT ttctgctgcctgtctaaccatttgaacttggcctttccttgttgaggtagCATTCTGAAGATGTTCTCAGCAGATAAGAAGCGGGTAGAGAATGCGCTGGAGTCCTGTCGGTCTCAACTTAAACCGGGTgtaagagtcagggccagggtgcaagttgggtcagattggcttttgcaatt #### Plcb3_ID1927_4 --> 0 - 0 Original Alignment GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACA-GTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gcccctcctcttcttgttcattctatacgcatttctcctgccccttgcagGACCCTAAGATTCGAGAAGTT------TTTGGCGGCCCTGATACACGACTGGAGGAGAGATTGATGACACGTGGTTGCTGGGCCGGATTTAGTAACTACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtatgtccaggctggtctccaaattgaaggcattagttcattcaaacctt Alignment from CESAR GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACA-GTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gcccctcctcttcttgttcattctatacgcatttctcctgccccttgcagGACCCTAAGATTCGAGAAGTT------TTTGGCGGCCCTGATACACGACTGGAGGAGAGATTGATGACACGTGGTTGCTGGGCCGGATTTAGTAACTACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtatgtccaggctggtctccaaattgaaggcattagttcattcaaacctt Alignment from Spaln_aa2Genome GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACA-GTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gcccctcctcttcttgttcattctatacgcatttctcctgccccttgcagGACCCTAAGATTCGAGAAGTT------TTTGGCGGCCCTGATACACGACTGGAGGAGAGATTGATGACAcGTGGTTGCTGGGCCGGATTTAGTAACTACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtatgtccaggctggtctccaaattgaaggcattagttcattcaaacctt Alignment from Spaln_nt2Genome GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACA-GTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gcccctcctcttcttgttcattctatacgcatttctcctgccccttgcagGACCCTAAGATTCGAGAAGT------TTTTGGCGGCCCTGATACACGACTGGAGGAGAGATTGATGACACGTGGTTGCTGGGCCGGATTTAGTAACTACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtatgtccaggctggtctccaaattgaaggcattagttcattcaaacctt Alignment from Pairagon GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACA-GTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gcccctcctcttcttgttcattctatacgcatttctcctgccccttgcagGACCCTAAGATTCGAGAAGT------TTTTGGCGGCCCTGATACACGACTGGAGGAGAGATTGATGACACGTGGTTGCTGGGCCGGATTTAGTAACTACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtatgtccaggctggtctccaaattgaaggcattagttcattcaaacctt Alignment from Exonerate_protein2genome GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACA-GTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gcccctcctcttcttgttcattctatacgcatttctcctgccccttgcagGACCCTAAGATTCGAGAAGTT------TTTGGCGGCCCTGATACACGACTGGAGGAGAGATTGATGACACGTGGTTGCTGGGCCGGATTTAGTAACTACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtatgtccaggctggtctccaaattgaaggcattagttcattcaaacctt Alignment from Exonerate_coding2genome gcccctcctcttcttgttcattctatacgcatttctcctgccccttgcaggaccctaagattcgagaagtttttggcggccctgatacacgactggaggagagattgatgacacgtggttgctgggccggatttagtaactaccacattcttgaacttcatggctgtgcaggatggcacagtcaaggtatgtccaggctggtctccaaattgaaggcattagttcattcaaacctt Alignment from GeneWise GACCCTAAGATTCGAGAAGTACTGGGCTTTGGAGGTCCTGACACCCGGCTGGAGGAGAAACTGATGACA-GTGGTGGCCGGGCCAGATCCAGTAAATACCACATTCTTGAACTTCATGGCCGTGCAAGATGACACAGTCAAG gcccctcctcttcttgttcattctatacgcatttctcctgccccttgcagGACCCTAAGATTCGAGAAGTT------TTTGGCGGCCCTGATACACGACTGGAGGAGAGATTGATGACACGTGGTTGCTGGGCCGGATTTAGTAACTACCACATTCTTGAACTTCATGGCTGTGCAGGATGGCACAGTCAAGgtatgtccaggctggtctccaaattgaaggcattagttcattcaaacctt #### Plcb3_ID1928_3 --> 0 - 0 Original Alignment GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGG-ACAGGTCGTTATGCCCGCCTGCCCAAG tagtactgagcacgaccttgtacctttactcattctgcccccttacctagGAGGTGGACACACTGGATATTAGCTCAATCAGAGACACAAGACACAGGTCGTTATGCTCGCCTGCCCAAAgtaatacagctagctttgcagtatacaaataccacaacacttacaaggat Alignment from CESAR GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGG-ACAGGTCGTTATGCCCGCCTGCCCAAG tagtactgagcacgaccttgtacctttactcattctgcccccttacctagGAGGTGGACACACTGGATATTAGCTCAATCAGAGACACAAGACACAGGTCGTTATGCTCGCCTGCCCAAAgtaatacagctagctttgcagtatacaaataccacaacacttacaaggat Alignment from Spaln_aa2Genome GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGG-ACAGGTCGTTATGCCCGCCTGCCCAAG tagtactgagcacgaccttgtacctttactcattctgcccccttacctagGAGGTGGACACACTGGATATTAGCTCAATCAGAGACACAAGAcACAGGTCGTTATGCTCGCCTGCCCAAAgtaatacagctagctttgcagtatacaaataccacaacacttacaaggat Alignment from Spaln_nt2Genome GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGG-ACAGGTCGTTATGCCCGCCTGCCCAAG tagtactgagcacgaccttgtacctttactcattctgcccccttacctagGAGGTGGACACACTGGATATTAGCTCAATCAGAGACACAAGACACAGGTCGTTATGCTCGCCTGCCCAAAgtaatacagctagctttgcagtatacaaataccacaacacttacaaggat Alignment from Pairagon GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGG-ACAGGTCGTTATGCCCGCCTGCCCAAG tagtactgagcacgaccttgtacctttactcattctgcccccttacctagGAGGTGGACACACTGGATATTAGCTCAATCAGAGACACAAGACACAGGTCGTTATGCTCGCCTGCCCAAAgtaatacagctagctttgcagtatacaaataccacaacacttacaaggat Alignment from Exonerate_protein2genome GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGG-ACAGGTCGTTATGCCCGCCTGCCCAAG tagtactgagcacgaccttgtacctttactcattctgcccccttacctagGAGGTGGACACACTGGATATTAGCTCAATCAGAGACACAAGACACAGGTCGTTATGCTCGCCTGCCCAAAgtaatacagctagctttgcagtatacaaataccacaacacttacaaggat Alignment from Exonerate_coding2genome tagtactgagcacgaccttgtacctttactcattctgcccccttacctaggaggtggacacactggatattagctcaatcagagacacaagacacaggtcgttatgctcgcctgcccaaagtaatacagctagctttgcagtatacaaataccacaacacttacaaggat Alignment from GeneWise GAGGTGGACACACTGGACATCAGCTCCATCAGGGACACAAGG-ACAGGTCGTTATGCCCGCCTGCCCAAG tagtactgagcacgaccttgtacctttactcattctgcccccttacctagGAGGTGGACACACTGGATATTAGCTCAATCAGAGACACAAGACACAGGTCGTTATGCTCGCCTGCCCAAAgtaatacagctagctttgcagtatacaaataccacaacacttacaaggat #### Pnlip_ID12751_10 --> 2 - 2 Original Alignment gtTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAG-AAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCaa agcatgagaggctggtaattgcccccattgactgcaacctgtctatgcaggtTGGTGGTACCAGATAACTGTCACCCTCTCAGGACAGCAAGGTGACTGGGCATATCCTAGTG---TTGTTCGGAAATGGACGTAACTCTAAGCAGTATCAAGTTTTCaagtgggcaataggaaacatcacacagccctttagatttctaagtgtgtcat Alignment from CESAR gtTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAG-AAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCaa agcatgagaggctggtaattgcccccattgactgcaacctgtctatgcaggtTGGTGGTACCAGATAACTGTCACCCTCTCAGGACAGCAAGGTGACTGGGCATATCCTAGTG---TTGTTCGGAAATGGACGTAACTCTAAGCAGTATCAAGTTTTCaagtgggcaataggaaacatcacacagccctttagatttctaagtgtgtcat Alignment from Spaln_aa2Genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAGAAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAAGGGCTCTCTGCAGCCAGGTACTTC agcatgagaggctggtaattgcccccattgactgcaacctgtctatgcagGTTGGTGGTACCAGATAACTGTCACCCTCT--CAGGACAGCAAGGTGACTGGGCATATCCTAGTGTTGTTCGGAAATGGACGTAACTCTAAGCAGTATCAAGTTTTCAAGTGGGCAATAGGAAACATCACACAgccctttagatttctaagtgtgtcat Alignment from Spaln_nt2Genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAG-AAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA agcatgagaggctggtaattgcccccattgactgcaacctgtctatgcagGTTGGTGGTACCAGATAACTGTCACCCTCTCAGGACAGCAAGGTGACTGGGCATATCCTAGT---GTTGTTCGGAAATGGACGTAACTCTAAGCAGTATCAAGTTTTCAAgtgggcaataggaaacatcacacagccctttagatttctaagtgtgtcat Alignment from Pairagon GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAG-AAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAA agcatgagaggctggtaattgcccccattgactgcaacctgtctatgcagGTTGGTGGTACCAGATAACTGTCACCCTCTCAGGACAGCAAGGTGACTGGGCATATCCTAGT---GTTGTTCGGAAATGGACGTAACTCTAAGCAGTATCAAGTTTTCAAgtgggcaataggaaacatcacacagccctttagatttctaagtgtgtcat Alignment from Exonerate_protein2genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAG-AAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAAGGGCTCT agcatgagaggctggtaattgcccccattgactgcaacctgtctatgcagGTTGGTGGTACCAGATAACTGTCACCCTCTCAGGACAGCAAGGTGACTGGGCATATCCTAGTG---TTGTTCGGAAATGGACGTAACTCTAAGCAGTATCAAGTTTTCAAGTGGGCAataggaaacatcacacagccctttagatttctaagtgtgtcat Alignment from Exonerate_coding2genome GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAG-AAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAAGGGCTCT agcatgagaggctggtaattgcccccattgactgcaacctgtctatgcagGTTGGTGGTACCAGATAACTGTCACCCTCTCAGGACAGCAAGGTGACTGGGCATATCCTAGTG---TTGTTCGGAAATGGACGTAACTCTAAGCAGTATCAAGTTTTCAAGTGGGCAataggaaacatcacacagccctttagatttctaagtgtgtcat Alignment from GeneWise GTTGGCGGTACCAGGTGACTGTCACCCTGTCTGGACAG-AAGGTCACTGGGCACATTCTAGTTTCTTTGTTTGGAAATGGAGGAAACTCTAAACAGTATGAAGTTTTCAAGGGCTCTCTG------------CAGCCAGGTACTTCTCACGTC-- agcatgagaggctggtaattgcccccattgactgcaacctgtctatgcagGTTGGTGGTACCAGATAACTGTCACCCTCTCAGGACAGCAAGGTGACTGGGCATATCCTAGTG---TTGTTCGGAAATGGACGTAACTCTAAGCAGTATCAAGTTTTCAAGTGGGCAATAGGAAACATCACACAGCCCTTTAGATTTCTAAGTGTgtcat #### Pnliprp1_ID12765_2 --> 2 - 0 Original Alignment ggAAAGAGGTTTGCTATGACAAC-CTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG ggaaagcccagtgattatggaccttcagccttccccctttctcttcgcagggAAAGAATTTTGTTACCACAACCCTTGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACCTGCTTCTTGCTCTACACTAATGAGAACCCAATTGCTTTCCAGgtgggtcctcgtgggccctagccaagaaccaggtgatcctaccactttga Alignment from CESAR ggAAAGAGGTTTGCTATGACAAC-CTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG ggaaagcccagtgattatggaccttcagccttccccctttctcttcgcagggAAAGAATTTTGTTACCACAACCCTTGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACCTGCTTCTTGCTCTACACTAATGAGAACCCAATTGCTTTCCAGgtgggtcctcgtgggccctagccaagaaccaggtgatcctaccactttga Alignment from Spaln_aa2Genome GGAAAGAGGTTTGCTATGACAAC-CTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG ggaaagcccagtgattatggaccttcagccttccccctttctcttcgcagGGAAAGAATTTTGTTACCACAACcCTTGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACCTGCTTCTTGCTCTACACTAATGAGAACCCAATTGCTTTCCAGgtgggtcctcgtgggccctagccaagaaccaggtgatcctaccactttga Alignment from Spaln_nt2Genome GGAAAGAGGTTTGCTATGACAACC-TTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG ggaaagcccagtgattatggaccttcagccttccccctttctcttcgcagGGAAAGAATTTTGTTACCACAACCCTTGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACCTGCTTCTTGCTCTACACTAATGAGAACCCAATTGCTTTCCAGgtgggtcctcgtgggccctagccaagaaccaggtgatcctaccactttga Alignment from Pairagon GGAAAGAGGTTTGCTATGACAACC-TTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG ggaaagcccagtgattatggaccttcagccttccccctttctcttcgcagGGAAAGAATTTTGTTACCACAACCCTTGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACCTGCTTCTTGCTCTACACTAATGAGAACCCAATTGCTTTCCAGgtgggtcctcgtgggccctagccaagaaccaggtgatcctaccactttga Alignment from Exonerate_protein2genome GGAAAGAGGTTTGCTATGACAAC-CTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG ggaaagcccagtgattatggaccttcagccttccccctttctcttcgcagGGAAAGAATTTTGTTACCACAACCCTTGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACCTGCTTCTTGCTCTACACTAATGAGAACCCAATTGCTTTCCAGgtgggtcctcgtgggccctagccaagaaccaggtgatcctaccactttga Alignment from Exonerate_coding2genome GGAAAGAGGTTTGCTATGACAAC-CTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG ggaaagcccagtgattatggaccttcagccttccccctttctcttcgcagGGAAAGAATTTTGTTACCACAACCCTTGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACCTGCTTCTTGCTCTACACTAATGAGAACCCAATTGCTTTCCAGgtgggtcctcgtgggccctagccaagaaccaggtgatcctaccactttga Alignment from GeneWise CTGATTCTCTGGACAATCCCTCTTTTCCTACTGGGAGCAGCTCAGGGGAAAGAGGTTTGCTATGACAACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTGGAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAG agtga------TTATGGACCTTCAGCCTTCCCCCTTTC---TCTTCGCAGGGAAAGAATTTTGTTACCACAACCCTTGGGTGCTTTTCTGATGCAGAACCCTGGGCAGGCACAGCCAATAGACCTCTAAAACTTCTCCCTTGGAGTCCTGAGAAGATCAACACCTGCTTCTTGCTCTACACTAATGAGAACCCAATTGCTTTCCAGgtgggtcctcgtgggccctagccaagaaccaggtgatcctaccactttga #### Pola2_ID1325_15 --> 0 - 2 Original Alignment CGAGTGCAGTTTGTGTCAGAGCCCTGCAGCCTCTCCATA-AATGGAGTGATGTTTGGTTTGACATCCACGGACCTGCTGTTCCACATCGGGGCTGAGGAGATCTTTag agatcactgtagttattattgcaaggagttgacagaatctctttctttagCGAGTGCAGTTTGTGTCAGAGCCTTGCAGCCTATCCATACAATGGAGTAATG---TATTCAACTACTGCAGACCTGCTGTATCACCTTGGGGCTGAGGAACTCTTCaggtaaaaccattggcaacccaataaggacagtgacataacatagtccttac Alignment from CESAR CGAGTGCAGTTTGTGTCAGAGCCCTGCAGCCTCTCCATA-AATGGAGTGATGTTTGGTTTGACATCCACGGACCTGCTGTTCCACATCGGGGCTGAGGAGATCTTTag agatcactgtagttattattgcaaggagttgacagaatctctttctttagCGAGTGCAGTTTGTGTCAGAGCCTTGCAGCCTATCCATACAATGGAGTAATGTAT---TCAACTACTGCAGACCTGCTGTATCACCTTGGGGCTGAGGAACTCTTCaggtaaaaccattggcaacccaataaggacagtgacataacatagtccttac Alignment from Spaln_aa2Genome CGAGTGCAGTTTGTGTCAGAGCCCTGCAGCCTCTCCATA-AATGGAGTGATGTTTGGTTTGACATCCACGGACCTGCTGTTCCACATCGGGGCTGAGGAGATCTTTAG agatcactgtagttattattgcaaggagttgacagaatctctttctttagCGAGTGCAGTTTGTGTCAGAGCCTTGCAGCCTATCCATAcAATGGAGTAATGTATTCA---ACTACTGCAGACCTGCTGTATCACCTTGGGGCTGAGGAACTCTTCAGgtaaaaccattggcaacccaataaggacagtgacataacatagtccttac Alignment from Spaln_nt2Genome CGAGTGCAGTTTGTGTCAGAGCCCTGCAGCCTCTCCATA-AATGGAGTGATGTTTGGTTTGACATCCACGGACCTGCTGTTCCACATCGGGGCTGAGGAGATCTTTAG agatcactgtagttattattgcaaggagttgacagaatctctttctttagCGAGTGCAGTTTGTGTCAGAGCCTTGCAGCCTATCCATACAATGGAGTAATGT---ATTCAACTACTGCAGACCTGCTGTATCACCTTGGGGCTGAGGAACTCTTCAGgtaaaaccattggcaacccaataaggacagtgacataacatagtccttac Alignment from Pairagon CGAGTGCAGTTTGTGTCAGAGCCCTGCAGCCTCTCCATA-AATGGAGTGATGTTTGGTTTGACATCCA-------CGGACCTGCTGTTCCACATCGGGGCTGAGGAGATCTTTAG agatcactgtagttattattgcaaggagttgacagaatctctttctttagCGAGTGCAGTTTGTGTCAGAGCCTTGCAGCCTATCCATACAATGGAGTAATGT----------ATTCAACTACTGCAGACCTGCTGTATCACCTTGGGGCTGAGGAACTCTTCAGgtaaaaccattggcaacccaataaggacagtgacataacatagtccttac Alignment from Exonerate_protein2genome CGAGTGCAGTTTGTGTCAGAGCCCTGCAGCCTCTCCATA-AATGGAGTGATGTTTGGTTTGACATCCACGGACCTGCTGTTCCACATCGGGGCTGAGGAGATCTTTAG agatcactgtagttattattgcaaggagttgacagaatctctttctttagCGAGTGCAGTTTGTGTCAGAGCCTTGCAGCCTATCCATACAATGGAGTAATGTATTCA---ACTACTGCAGACCTGCTGTATCACCTTGGGGCTGAGGAACTCTTCAGgtaaaaccattggcaacccaataaggacagtgacataacatagtccttac Alignment from Exonerate_coding2genome CGAGTGCAGTTTGTGTCAGAGCCCTGCAGCCTCTCCATA-AATGGAGTGATGTTTGGTTTGACATCCACGGACCTGCTGTTCCACATCGGGGCTGAGGAGATCTTTAG agatcactgtagttattattgcaaggagttgacagaatctctttctttagCGAGTGCAGTTTGTGTCAGAGCCTTGCAGCCTATCCATACAATGGAGTAATGTATTCA---ACTACTGCAGACCTGCTGTATCACCTTGGGGCTGAGGAACTCTTCAGgtaaaaccattggcaacccaataaggacagtgacataacatagtccttac Alignment from GeneWise CGAGTGCAGTTTGTGTCAGAGCCCTGCAGCCTCTCC-ATAAATGGAGTGATGTTTGGTTTGACATCCACGGACCTGCTGTTCCACATCGGGGCTGAGGAGATCTTTAG agatcactgtagttattattgcaaggagttgacagaatctctttctttagCGAGTGCAGTTTGTGTCAGAGCCTTGCAGCCTATCCATACAATGGAGTAATGTATTCA---ACTACTGCAGACCTGCTGTATCACCTTGGGGCTGAGGAACTCTTCAGgtaaaaccattggcaacccaataaggacagtgacataacatagtccttac #### Pold4_ID437_2 --> 2 - 1 Original Alignment ggGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTTGAC-CTGGCCTGGCAGTATGGGCCTTGTACAg gtaagaaggtttaggtggagcagggggactcatggtctctctccctgcagggGAAGACACACAGTCCCTCAGCCAAGAGGAGACTGAGCTGGAGCTGCTACGGCAGTTTGACCTTGACATGGCAATATGGGCCTTGTACAggtaagtatcccctgtaaccatccttcattcaatcttacatgaaggacttt Alignment from CESAR ggGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTTGAC-CTGGCCTGGCAGTATGGGCCTTGTACAg gtaagaaggtttaggtggagcagggggactcatggtctctctccctgcagggGAAGACACACAGTCCCTCAGCCAAGAGGAGACTGAGCTGGAGCTGCTACGGCAGTTTGACCTTGACATGGCAATATGGGCCTTGTACAggtaagtatcccctgtaaccatccttcattcaatcttacatgaaggacttt Alignment from Spaln_aa2Genome GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTTGACCTG-GCCTGGCAGTATGGGCCTTGTACAG gtaagaaggtttaggtggagcagggggactcatggtctctctccctgcagGGGAAGACACACAGTCCCTCAGCCAAGAGGAGACTGAGCTGGAGCTGCTACGGCAGTTTGACCTTgACATGGCAATATGGGCCTTGTACAGgtaagtatcccctgtaaccatccttcattcaatcttacatgaaggacttt Alignment from Spaln_nt2Genome GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTTGACCTGGCC-TGGCAGTATGGGCCTTGTACAG gtaagaaggtttaggtggagcagggggactcatggtctctctccctgcagGGGAAGACACACAGTCCCTCAGCCAAGAGGAGACTGAGCTGGAGCTGCTACGGCAGTTTGACCTTGACATGGCAATATGGGCCTTGTACAGgtaagtatcccctgtaaccatccttcattcaatcttacatgaaggacttt Alignment from Pairagon GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTTGACCT-GGCCTGGCAGTATGGGCCTTGTACAG gtaagaaggtttaggtggagcagggggactcatggtctctctccctgcagGGGAAGACACACAGTCCCTCAGCCAAGAGGAGACTGAGCTGGAGCTGCTACGGCAGTTTGACCTTGACATGGCAATATGGGCCTTGTACAGgtaagtatcccctgtaaccatccttcattcaatcttacatgaaggacttt Alignment from Exonerate_protein2genome GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTTGAC-CTGGCCTGGCAGTATGGGCCTTGTACAG gtaagaaggtttaggtggagcagggggactcatggtctctctccctgcagGGGAAGACACACAGTCCCTCAGCCAAGAGGAGACTGAGCTGGAGCTGCTACGGCAGTTTGACCTTGACATGGCAATATGGGCCTTGTACAGgtaagtatcccctgtaaccatccttcattcaatcttacatgaaggacttt Alignment from Exonerate_coding2genome GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTTGAC-CTGGCCTGGCAGTATGGGCCTTGTACAG gtaagaaggtttaggtggagcagggggactcatggtctctctccctgcagGGGAAGACACACAGTCCCTCAGCCAAGAGGAGACTGAGCTGGAGCTGCTACGGCAGTTTGACCTTGACATGGCAATATGGGCCTTGTACAGgtaagtatcccctgtaaccatccttcattcaatcttacatgaaggacttt Alignment from GeneWise GGGAAGACACCCAGTCCCTCAGCCAGGAGGAAACAGAGCTGGAGCTGCTGAGGCAGTTTGACCTG-GCCTGGCAGTATGGGCCTTGTACAG gtaagaaggtttaggtggagcagggggactcatggtctctctccctgcagGGGAAGACACACAGTCCCTCAGCCAAGAGGAGACTGAGCTGGAGCTGCTACGGCAGTTTGACCTTGACATGGCAATATGGGCCTTGTACAGgtaagtatcccctgtaaccatccttcattcaatcttacatgaaggacttt #### Poll_ID9484_3 --> 1 - 0 Original Alignment gTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCAC-ACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG aaccattcatactctttgaatagctcccctttgctctgtttcttgcctaggTCCTTAGATGAGCCACAGCCCAGCAAGTCTGGCCAGGATGCTTCTGCTCCTGGTACTCAGTGGGATTTGCCCAGAACCACACTCTCTCTTTCCCCTCCCCACCCCCCGAGCAGTATCACCTCCTCCAACAGCAGAAAAGCCATCCAGAACTCGAGCCCAAgtgagttggcatgccacttgaggccgctgacgatagaaaatgcaagaatc Alignment from CESAR gTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACC-AGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG aaccattcatactctttgaatagctcccctttgctctgtttcttgcctaggTCCTTAGATGAGCCACAGCCCAGCAAGTCTGGCCAGGATGCTTCTGCTCCTGGTACTCAGTGGGATTTGCCCAGAACCACACTCTCTCTTTCCCCTCCCCACCCCCCGAGCAGTATCACCTCCTCCAACAGCAGAAAAGCCATCCAGAACTCGAGCCCAAgtgagttggcatgccacttgaggccgctgacgatagaaaatgcaagaatc Alignment from Spaln_aa2Genome GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACC-AGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG aaccattcatactctttgaatagctcccctttgctctgtttcttgcctagGTCCTTAGATGAGCCACAGCCCAGCAAGTCTGGCCAGGATGCTTCTGCTCCTGGTACTCAGTGGGATTTGCCCAGAACCACACTCTCTCTTTCCCCTCCCCACCCCcCGAGCAGTATCACCTCCTCCAACAGCAGAAAAGCCATCCAGAACTCGAGCCCAAgtgagttggcatgccacttgaggccgctgacgatagaaaatgcaagaatc Alignment from Spaln_nt2Genome GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCACACCA-GAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG aaccattcatactctttgaatagctcccctttgctctgtttcttgcctagGTCCTTAGATGAGCCACAGCCCAGCAAGTCTGGCCAGGATGCTTCTGCTCCTGGTACTCAGTGGGATTTGCCCAGAACCACACTCTCTCTTTCCCCTCCCCACCCCCCGAGCAGTATCACCTCCTCCAACAGCAGAAAAGCCATCCAGAACTCGAGCCCAAgtgagttggcatgccacttgaggccgctgacgatagaaaatgcaagaatc Alignment from Pairagon GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCA-CACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG aaccattcatactctttgaatagctcccctttgctctgtttcttgcctagGTCCTTAGATGAGCCACAGCCCAGCAAGTCTGGCCAGGATGCTTCTGCTCCTGGTACTCAGTGGGATTTGCCCAGAACCACACTCTCTCTTTCCCCTCCCCACCCCCCGAGCAGTATCACCTCCTCCAACAGCAGAAAAGCCATCCAGAACTCGAGCCCAAgtgagttggcatgccacttgaggccgctgacgatagaaaatgcaagaatc Alignment from Exonerate_protein2genome GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCAC-ACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG aaccattcatactctttgaatagctcccctttgctctgtttcttgcctagGTCCTTAGATGAGCCACAGCCCAGCAAGTCTGGCCAGGATGCTTCTGCTCCTGGTACTCAGTGGGATTTGCCCAGAACCACACTCTCTCTTTCCCCTCCCCACCCCCCGAGCAGTATCACCTCCTCCAACAGCAGAAAAGCCATCCAGAACTCGAGCCCAAgtgagttggcatgccacttgaggccgctgacgatagaaaatgcaagaatc Alignment from Exonerate_coding2genome GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCAC-ACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG aaccattcatactctttgaatagctcccctttgctctgtttcttgcctagGTCCTTAGATGAGCCACAGCCCAGCAAGTCTGGCCAGGATGCTTCTGCTCCTGGTACTCAGTGGGATTTGCCCAGAACCACACTCTCTCTTTCCCCTCCCCACCCCCCGAGCAGTATCACCTCCTCCAACAGCAGAAAAGCCATCCAGAACTCGAGCCCAAgtgagttggcatgccacttgaggccgctgacgatagaaaatgcaagaatc Alignment from GeneWise GTCCTTGGATGAACCACAGCCCAGCAAGTCAGGCCAAGATGCTTCTGCTCCTGGCACCCAGCGGGATTTACCCAGGACCACCCTTTCTCTTTCCCCTCCTCAC-ACCAGAGCTGTATCTCCTCCCCCAACGGCAGAAAAGCCATCAAGAACCCAAGCCCAG aaccattcatactctttgaatagctcccctttgctctgtttcttgcctagGTCCTTAGATGAGCCACAGCCCAGCAAGTCTGGCCAGGATGCTTCTGCTCCTGGTACTCAGTGGGATTTGCCCAGAACCACACTCTCTCTTTCCCCTCCCCACCCCCCGAGCAGTATCACCTCCTCCAACAGCAGAAAAGCCATCCAGAACTCGAGCCCAAgtgagttggcatgccacttgaggccgctgacgatagaaaatgcaagaatc #### Polr2g_ID2378_5 --> 0 - 0 Original Alignment TCCATCCCTTCAGAGATG-GAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAGACCATGGACGAG ggctaaagtttcttgttcctggaagtcaattcacttttaatcttttatagTCCATACCCTCAGAAATGCGAGTTTGACCCAAATTCAAACCCCCCCTGTTATAAGACCATGGATGAAgtatgtgagcatggattggagggtgagatgaagggtgagggaagcaaatc Alignment from CESAR TCCATCCCTTCAGAGATG-GAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAGACCATGGACGAG gtctaaagtttcttgttcctggaagtcaattcacttttaatcttttatagTCCATACCCTCAGAAATGCGAGTTTGACCCAAATTCAAACCCCCCCTGTTATAAGACCATGGATGAAgtatgtgagcatggattggagggtgagatgaagggtgagggaagcaaatc Alignment from Spaln_aa2Genome TCCATCCCTTCAGAGATG-GAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAGACCATGGACGAG ggctaaagtttcttgttcctggaagtcaattcacttttaatcttttatagTCCATACCCTCAGAAATGcGAGTTTGACCCAAATTCAAACCCCCCCTGTTATAAGACCATGGATGAAgtatgtgagcatggattggagggtgagatgaagggtgagggaagcaaatc Alignment from Spaln_nt2Genome TCCATCCCTTCAGAGATG-GAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAGACCATGGACGAG ggctaaagtttcttgttcctggaagtcaattcacttttaatcttttatagTCCATACCCTCAGAAATGCGAGTTTGACCCAAATTCAAACCCCCCCTGTTATAAGACCATGGATGAAgtatgtgagcatggattggagggtgagatgaagggtgagggaagcaaatc Alignment from Pairagon TCCATCCCTTCAGAGATG-GAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAGACCATGGACGAG ggctaaagtttcttgttcctggaagtcaattcacttttaatcttttatagTCCATACCCTCAGAAATGCGAGTTTGACCCAAATTCAAACCCCCCCTGTTATAAGACCATGGATGAAgtatgtgagcatggattggagggtgagatgaagggtgagggaagcaaatc Alignment from Exonerate_protein2genome TCCATCCCTTCAGAGATG-GAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAGACCATGGACGAG ggctaaagtttcttgttcctggaagtcaattcacttttaatcttttatagTCCATACCCTCAGAAATGCGAGTTTGACCCAAATTCAAACCCCCCCTGTTATAAGACCATGGATGAAgtatgtgagcatggattggagggtgagatgaagggtgagggaagcaaatc Alignment from Exonerate_coding2genome TCCATCCCTTCAGAGATG-GAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAGACCATGGACGAG ggctaaagtttcttgttcctggaagtcaattcacttttaatcttttatagTCCATACCCTCAGAAATGCGAGTTTGACCCAAATTCAAACCCCCCCTGTTATAAGACCATGGATGAAgtatgtgagcatggattggagggtgagatgaagggtgagggaagcaaatc Alignment from GeneWise ----CTTTTCACAGAAATTGGGCCTATGTCTTGCTTCATCTCTCGACATTCCATCCCTTCAGAGATGGAGTTTGATCCAAATTCAAACCCCCCTTGCTATAAGACCATGGACGAG ggctaaagTTTCTTGTTCCTGGAAGTCAATTCACTTTTAATCTTTTATAGTCCATAC------CCTCAGAAATGCGAGTTTGACCCAAATTCAAACCCCCCCTGTTATAAGACCATGGATGAAgtatgtgagcatggattggagggtgagatgaagggtgagggaagcaaatc #### Ppp1ca_ID409_3 --> 2 - 1 Original Alignment gtGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTG-TTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATC---AACCGCATTTATGGCTTCTATGATGAAt acacagctttactgaatatacttcattaacacagcgtttcctttcctcaggtGACATCCAGGGACAGCACTATGACCTTCTGCACCTGTTTGATTATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGAGCGATTATTTAGACCGTGGCAAACAATCCTTGGAGACTATCTGCCTACTTGCTTACCTATAAGATCAGATATTTAGAGAATTTCTATGTATTTCATGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTCTATGGTGCAtgtaggggattggtaccctgacgtcttactggatcatttaatattgcctat Alignment from CESAR gtGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTG-TTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATC---AACCGCATTTATGGCTTCTATGATGAAt acacagctttactgaatatacttcattaacacagcgtttcctttcctcaggtGACATCCAGGGACAGCACTATGACCTTCTGCACCTGTTTGATTATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGAGCGATTATTTAGACCGTGGCAAACAATCCTTGGAGACTATCTGCCTACTTGCTTACCTATAAGATCAGATATTTAGAGAATTTCTATGTATTTCATGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTCTATGGTGCAtgtaggggattggtaccctgacgtcttactggatcatttaatattgcctat Alignment from Spaln_aa2Genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTG-TTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGC---ATCAACCGCATTTATGGCTTCTATGATGAAT acacagctttactgaatatacttcattaacacagcgtttcctttcctcagGTGACATCCAGGGACAGCACTATGACCTTCTGCACCTGTTTGATTATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGAGCGATTATTTAGACCGTGGCAAACAATCCTTGGAGACTATCTGCCTAcTTGCTTACCTATAAGATCAGATATTTAGAGAATTTCTATGTATTTCATGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTCTATGGTGCATgtaggggattggtaccctgacgtcttactggatcatttaatattgcctat Alignment from Spaln_nt2Genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTG-TTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATC---AACCGCATTTATGGCTTCTATGATGAAT acacagctttactgaatatacttcattaacacagcgtttcctttcctcagGTGACATCCAGGGACAGCACTATGACCTTCTGCACCTGTTTGATTATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGAGCGATTATTTAGACCGTGGCAAACAATCCTTGGAGACTATCTGCCTACTTGCTTACCTATAAGATCAGATATTTAGAGAATTTCTATGTATTTCATGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTCTATGGTGCATgtaggggattggtaccctgacgtcttactggatcatttaatattgcctat Alignment from Pairagon GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTG-TTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGC---ATCAACCGCATTTATGGCTTCTATGATGAAT acacagctttactgaatatacttcattaacacagcgtttcctttcctcagGTGACATCCAGGGACAGCACTATGACCTTCTGCACCTGTTTGATTATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGAGCGATTATTTAGACCGTGGCAAACAATCCTTGGAGACTATCTGCCTACTTGCTTACCTATAAGATCAGATATTTAGAGAATTTCTATGTATTTCATGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTCTATGGTGCATgtaggggattggtaccctgacgtcttactggatcatttaatattgcctat Alignment from Exonerate_protein2genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTG-TTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGC---ATCAACCGCATTTATGGCTTCTATGATGAAT acacagctttactgaatatacttcattaacacagcgtttcctttcctcagGTGACATCCAGGGACAGCACTATGACCTTCTGCACCTGTTTGATTATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGAGCGATTATTTAGACCGTGGCAAACAATCCTTGGAGACTATCTGCCTACTTGCTTACCTATAAGATCAGATATTTAGAGAATTTCTATGTATTTCATGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTCTATGGTGCATgtaggggattggtaccctgacgtcttactggatcatttaatattgcctat Alignment from Exonerate_coding2genome GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTG-TTGCTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGC---ATCAACCGCATTTATGGCTTCTATGATGAAT acacagctttactgaatatacttcattaacacagcgtttcctttcctcagGTGACATCCAGGGACAGCACTATGACCTTCTGCACCTGTTTGATTATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGAGCGATTATTTAGACCGTGGCAAACAATCCTTGGAGACTATCTGCCTACTTGCTTACCTATAAGATCAGATATTTAGAGAATTTCTATGTATTTCATGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTCTATGGTGCATgtaggggattggtaccctgacgtcttactggatcatttaatattgcctat Alignment from GeneWise GTGACATCCATGGCCAGTACTATGACCTTCTACGGCTGTTTGAGTATGGTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGGGGGATTATGTAGATCGGGGCAAGCAGTCTTTGGAGACCATCTGCCTGTTG-CTGGCCTATAAGATCAGATACCCGGAGAATTTCTTTCTACTTCGTGGGAACCATGAGTGTGCCAGCATC---AACCGCATTTATGGCTTCTATGATGAAT acacagctttactgaatatacttcattaacacagcgtttcctttcctcagGTGACATCCAGGGACAGCACTATGACCTTCTGCACCTGTTTGATTATGGTGGTTTCCCACCAGAGAGCAACTACCTCTGCCTGAGCGATTATTTAGACCGTGGCAAACAATCCTTGGAGACTATCTGCCTACTTGCTTACCTATAAGATCAGATATTTAGAGAATTTCTATGTATTTCATGGAAATCATGAGTGTGCCAGCATTATTAACCGCATTTATGGGTTCTATGGTGCATgtaggggattggtaccctgacgtcttactggatcatttaatattgcctat #### Ppp1ca_ID412_6 --> 0 - 0 Original Alignment GTTGTAGAAGAT-GGCTATGAGTTCTTTGCCAAG---AGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGTTCC------TTCCAG catggtctgatgcctaacttaaagagttttcaacccacttttctctccagGTTGTA---GGTCGGATATGAGTTCTTTGCAAAGAAGAAAAAGCTGGTAACGTTCTTCTCAGCTCCCAATTACTGTGGAGAATTTGAAAATGCTGGTGCCATGATGAGTGTAGACAAGACCCTCATATGCTCCAGAGCTTTCCCTgtaaggacaaggaatagcctgtagggaatagcctgtccttagaaactggc Alignment from CESAR GTTGTAGAAGATGGCTATGAGTTCTTTGCC---AAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGTTCC------TTCCAG catggtctgatgcctaacttaaagagttttcaacccacttttctctccagGTTGTAGGT--CGGATATGAGTTCTTTGCAAAGAAGAAAAAGCTGGTAACGTTCTTCTCAGCTCCCAATTACTGTGGAGAATTTGAAAATGCTGGTGCCATGATGAGTGTAGACAAGACCCTCATATGCTCCAGAGCTTTCCCTgtaaggacaaggaatagcctgtagggaatagcctgtccttagaaactggc Alignment from Spaln_aa2Genome GTTGTAGAAGATGGCTATGAGTTCTTTGCC---AAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGTTCC------TTCCAG catggtctgatgcctaacttaaagagttttcaacccacttttctctccaggttgtagGTC---------GGATATGAGTTCTTTGCAAAGAAGAAAAAGCTGGTAACGTTCTTCTCAGCTCCCAATTACTGTGGAGAATTTGAAAATGCTGGTGCCATGATGAGTGTAGACAAGACCCTCATATGCTCCAGAGCTTTCCCTgtaaggacaaggaatagcctgtagggaatagcctgtccttagaaactggc Alignment from Spaln_nt2Genome GTTGTAGAAGATGGCTATGAGTTCTTTGCCAAGAG---ACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGTTCC------TTCCAG catggtctgatgcctaacttaaagagttttcaacccacttttctctccagGTTGTAG--GTCGGATATGAGTTCTTTGCAAAGAAGAAAAAGCTGGTAACGTTCTTCTCAGCTCCCAATTACTGTGGAGAATTTGAAAATGCTGGTGCCATGATGAGTGTAGACAAGACCCTCATATGCTCCAGAGCTTTCCCTgtaaggacaaggaatagcctgtagggaatagcctgtccttagaaactggc Alignment from Pairagon GTTGTAGAAGATGGCTATGAGTTCTTTGC---CAAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGTTCC------TTCCAG catggtctgatgcctaacttaaagagttttcaacccacttttctctccagGTTGTAG--GTCGGATATGAGTTCTTTGCAAAGAAGAAAAAGCTGGTAACGTTCTTCTCAGCTCCCAATTACTGTGGAGAATTTGAAAATGCTGGTGCCATGATGAGTGTAGACAAGACCCTCATATGCTCCAGAGCTTTCCCTgtaaggacaaggaatagcctgtagggaatagcctgtccttagaaactggc Alignment from Exonerate_protein2genome TGTAGAAGATGGCTATGAGTTCTTTGCC---AAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGTTCC------TTCCAG catggtctgatgcctaacttaaagagttttcaacccacttttctctccagGTTGTAGGTCGGATATGAGTTCTTTGCAAAGAAGAAAAAGCTGGTAACGTTCTTCTCAGCTCCCAATTACTGTGGAGAATTTGAAAATGCTGGTGCCATGATGAGTGTAGACAAGACCCTCATATGCTCCAGAGCTTTCCCTgtaaggacaaggaatagcctgtagggaatagcctgtccttagaaactggc Alignment from Exonerate_coding2genome TGTAGAAGATGGCTATGAGTTCTTTGCC---AAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGTTCC------TTCCAG catggtctgatgcctaacttaaagagttttcaacccacttttctctccagGTTGTAGGTCGGATATGAGTTCTTTGCAAAGAAGAAAAAGCTGGTAACGTTCTTCTCAGCTCCCAATTACTGTGGAGAATTTGAAAATGCTGGTGCCATGATGAGTGTAGACAAGACCCTCATATGCTCCAGAGCTTTCCCTgtaaggacaaggaatagcctgtagggaatagcctgtccttagaaactggc Alignment from GeneWise GTTGTAGAAGATGGCTATGAGTTCTTTGCCAAGAGACAG---TTGGTGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGTTTGACAATGCTGGTGCCATGATGAGTGTGGATGAGACCCTCATGTGTTCC------TTCCAG catggtctgatgcctaacttaaagagttttcaacccacttttctctccaggttgtagGTC---------GGATATGAGTTCTTTGCAAAGAAGAAAAAGCTGGTAACGTTCTTCTCAGCTCCCAATTACTGTGGAGAATTTGAAAATGCTGGTGCCATGATGAGTGTAGACAAGACCCTCATATGCTCCAGAGCTTTCCCTgtaaggacaaggaatagcctgtagggaatagcctgtccttagaaactggc #### Ppp1r14b_ID1940_3 --> 0 - 0 Original Alignment GAGCTGTTAGTT-GACTGTTACAAACCCACTGAG atgagaaaccctgtgcccaagaagccattgtcctctctgtgcccccacagCAACTATTAGTTCGACTGTTATAAACCCACCGAGgtgagttactccccttccccacaggcatgattgtgcacacaagcagctgt Alignment from CESAR GAGCTGTTAGTT-GACTGTTACAAACCCACTGAG atgagaaaccctgtgcccaagaagccattgtcctctctgtgcccccacagCAACTATTAGTTCGACTGTTATAAACCCACCGAGgtgagttactccccttccccacaggcatgattgtgcacacaagcagctgt Alignment from Spaln_aa2Genome GAGCTGTTAGTTGACTGTTACAAACCCACTGAG atgagaaaccctgtgcccaagaagccattgtcctctctgtgcccccacagcaactattag---------TTCGACTGTTATAAACCCACCGAGgtgagttactccccttccccacaggcatgattgtgcacacaagcagctgt Alignment from Spaln_nt2Genome GAGCTGTTAGTT-GACTGTTACAAACCCACTGAG atgagaaaccctgtgcccaagaagccattgtcctctctgtgcccccacagCAACTATTAGTTCGACTGTTATAAACCCACCGAGgtgagttactccccttccccacaggcatgattgtgcacacaagcagctgt Alignment from Pairagon GAGCTGTTAGTT-GACTGTTACAAACCCACTGAG atgagaaaccctgtgcccaagaagccattgtcctctctgtgcccccacagCAACTATTAGTTCGACTGTTATAAACCCACCGAGgtgagttactccccttccccacaggcatgattgtgcacacaagcagctgt Alignment from Exonerate_protein2genome GAGCTGTTAGTT-GACTGTTACAAACCCACTGAG atgagaaaccctgtgcccaagaagccattgtcctctctgtgcccccacagCAACTATTAGTTCGACTGTTATAAACCCACCGAGgtgagttactccccttccccacaggcatgattgtgcacacaagcagctgt Alignment from Exonerate_coding2genome atgagaaaccctgtgcccaagaagccattgtcctctctgtgcccccacagcaactattagttcgactgttataaacccaccgaggtgagttactccccttccccacaggcatgattgtgcacacaagcagctgt Alignment from GeneWise atgagaaaccctgtgcccaagaagccattgtcctctctgtgcccccacagcaactattagttcgactgttataaacccaccgaggtgagttactccccttccccacaggcatgattgtgcacacaagcagctgt #### Ppp1r32_ID2842_9 --> 0 - 0 Original Alignment GTGCCTACTCCAGCCCCACAG-TCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG ctggaatatatgtgaaagtgtaccttgcgaaggcatcttctcctttccagGTTCCTGCCTCAGCTCCCCAACTCTGCCAGCATGAGTCACAGATCCTACCGCCCCCCCCAGCGAATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAAgtgagtattctaacactaatcctagtcccaggctatcttcccaaattctg Alignment from CESAR GTGCCTACTCCAGCCCCACAG-TCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG ctggaatatatgtgaaagtgtaccttgcgaaggcatcttctcctttccagGTTCCTGCCTCAGCTCCCCAACTCTGCCAGCATGAGTCACAGATCCTACCGCCCCCCCCAGCGAATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAAgtgagtattctaacactaatcctagtcccaggctatcttcccaaattctg Alignment from Spaln_aa2Genome CCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG ctggaatatatgtgaaagtgtaccttgcgaaggcatcttctcctttccaggttcctgcctcagCTCCCCAACTCTGCCAGCATGAGTCACAGATCCTACCGCCCCCCCCAGCGAATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAAgtgagtattctaacactaatcctagtcccaggctatcttcccaaattctg Alignment from Spaln_nt2Genome GTGCCTACTCCAGCCCCACAG-TCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG ctggaatatatgtgaaagtgtaccttgcgaaggcatcttctcctttccagGTTCCTGCCTCAGCTCCCCAACTCTGCCAGCATGAGTCACAGATCCTACCGCCCCCCCCAGCGAATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAAgtgagtattctaacactaatcctagtcccaggctatcttcccaaattctg Alignment from Pairagon GTGCCTACTCCAGCCCCACAG-TCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG ctggaatatatgtgaaagtgtaccttgcgaaggcatcttctcctttccagGTTCCTGCCTCAGCTCCCCAACTCTGCCAGCATGAGTCACAGATCCTACCGCCCCCCCCAGCGAATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAAgtgagtattctaacactaatcctagtcccaggctatcttcccaaattctg Alignment from Exonerate_protein2genome GTGCCTACTCCAGCCCCACAG-TCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG ctggaatatatgtgaaagtgtaccttgcgaaggcatcttctcctttccagGTTCCTGCCTCAGCTCCCCAACTCTGCCAGCATGAGTCACAGATCCTACCGCCCCCCCCAGCGAATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAAgtgagtattctaacactaatcctagtcccaggctatcttcccaaattctg Alignment from Exonerate_coding2genome GTGCCTACTCCAGCCCCACAG-TCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG ctggaatatatgtgaaagtgtaccttgcgaaggcatcttctcctttccagGTTCCTGCCTCAGCTCCCCAACTCTGCCAGCATGAGTCACAGATCCTACCGCCCCCCCCAGCGAATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAAgtgagtattctaacactaatcctagtcccaggctatcttcccaaattctg Alignment from GeneWise GTGCCTACTCCAGCCCCACAGTCTGCCAGCATGAGCCACAGGTCCTACCAGCCTCCCCAGCGGATGCAACAGACAAATGTTGCCCTGCTTGGCAGGGAGTCTGTGGGGAACAAG ctggaatatatgtgaaagtgtaccttgcgaaggcatcttctcctttccaggttcctgcctcagCTCCCC------------AACTCTGCCAGCATGAGTCACAGATCCTACCGCCCCCCCCAGCGAATGCAACAGGCTAATGTTGCCCTGCTTGGAAGGGAGTCTGTGGGGAATAAAgtgagtattctaacactaatcctagtcccaggctatcttcccaaattctg #### Ppp1r32_ID2843_8 --> 0 - 0 Original Alignment GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGAT-CGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA ctctgttgctccatgcgtcgcaactacgcctcttctgcttccctgtccagGGGAGTGATTTCTTGCCTGTGCTGTCCAGAGGATCTGATCCGGGACACAGGATTTAGCCGAGTAAATGAAAGAACTTTAAAGCTGAGAgtacgtacgactgagagtaaggcaatgtatagttgtcgacttctgtctac Alignment from CESAR GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGAT-CGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA ctctgttgctccatgcgtcgcaactacgcctcttctgcttccctgtccagGGGAGTGATTTCTTGCCTGTGCTGTCCAGAGGATCTGATCCGGGACACAGGATTTAGCCGAGTAAATGAAAGAACTTTAAAGCTGAGAgtacgtacgactgagagtaaggcaatgtatagttgtcgacttctgtctac Alignment from Spaln_aa2Genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGAT-CGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA ctctgttgctccatgcgtcgcaactacgcctcttctgcttccctgtccagGGGAGTGATTTCTTGCCTGTGCTGTCCAGAGGATCTGATcCGGGACACAGGATTTAGCCGAGTAAATGAAAGAACTTTAAAGCTGAGAgtacgtacgactgagagtaaggcaatgtatagttgtcgacttctgtctac Alignment from Spaln_nt2Genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGATCGG-GACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA ctctgttgctccatgcgtcgcaactacgcctcttctgcttccctgtccagGGGAGTGATTTCTTGCCTGTGCTGTCCAGAGGATCTGATCCGGGACACAGGATTTAGCCGAGTAAATGAAAGAACTTTAAAGCTGAGAgtacgtacgactgagagtaaggcaatgtatagttgtcgacttctgtctac Alignment from Pairagon GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGAT-CGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA ctctgttgctccatgcgtcgcaactacgcctcttctgcttccctgtccagGGGAGTGATTTCTTGCCTGTGCTGTCCAGAGGATCTGATCCGGGACACAGGATTTAGCCGAGTAAATGAAAGAACTTTAAAGCTGAGAgtacgtacgactgagagtaaggcaatgtatagttgtcgacttctgtctac Alignment from Exonerate_protein2genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGAT-CGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA ctctgttgctccatgcgtcgcaactacgcctcttctgcttccctgtccagGGGAGTGATTTCTTGCCTGTGCTGTCCAGAGGATCTGATCCGGGACACAGGATTTAGCCGAGTAAATGAAAGAACTTTAAAGCTGAGAgtacgtacgactgagagtaaggcaatgtatagttgtcgacttctgtctac Alignment from Exonerate_coding2genome GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGAT-CGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA ctctgttgctccatgcgtcgcaactacgcctcttctgcttccctgtccagGGGAGTGATTTCTTGCCTGTGCTGTCCAGAGGATCTGATCCGGGACACAGGATTTAGCCGAGTAAATGAAAGAACTTTAAAGCTGAGAgtacgtacgactgagagtaaggcaatgtatagttgtcgacttctgtctac Alignment from GeneWise GGAAGTGATTTCCTCCCTGTGCTGTCCAGAGGCTCTGAT-CGGGACACTGGATTCAGCCGAGTGAATGAAAGGACCTTGAACCCCAGA ctctgttgctccatgcgtcgcaactacgcctcttctgcttccctgtccagGGGAGTGATTTCTTGCCTGTGCTGTCCAGAGGATCTGATCCGGGACACAGGATTTAGCCGAGTAAATGAAAGAACTTTAAAGCTGAGAgtacgtacgactgagagtaaggcaatgtatagttgtcgacttctgtctac #### Pprc1_ID9715_3 --> 0 - 0 Original Alignment AGCAGATTATCTCTGGAGGACCAGAATGAAATGTCGCTGCTCACAGCTCTGACG-GAGATCTTGGACAATGCAGATTCTGAGAACCTGTCCCCTTTTGACACCATTCCTGATTCAGAGCTGCTCGTGTCCCCTCGGGAGAGCTCCTCT CTGCACAAGCTGCTCAATCT gtgatggattcagcctagaaggttagcaatttacttctgtttatttttagAGCAGATTGTCTCTGAAGGACCAAAATGAAATGTCTCTGCTTACACCTCTGATGCGAAATATTGGACAATGCAGACTCTGAGAACCTGTCCCCATTTGACACCATCTCTGACTCTGGGCTACTGGTGTCAGCTTGGGAGAGTTCATCTgtagctgactttattcttgttgccttgcagTTGCACAAGCTCCTGAATCT Alignment from CESAR AGCAGATTATCTCTGGAGGACCAGAATGAAATGTCGCTGCTCACAGCTCTGACG-GAGATCTTGGACAATGCAGATTCTGAGAACCTGTCCCCTTTTGACACCATTCCTGATTCAGAGCTGCTCGTGTCCCCTCGGGAGAGCTCCTCT CTGCACAAGCTGCTCAATCT gtgatggattcagcctagaaggttagcaatttacttctgtttatttttagAGCAGATTGTCTCTGAAGGACCAAAATGAAATGTCTCTGCTTACACCTCTGATGCGAAATATTGGACAATGCAGACTCTGAGAACCTGTCCCCATTTGACACCATCTCTGACTCTGGGCTACTGGTGTCAGCTTGGGAGAGTTCATCTgtagctgatgccgcgtttatttctccctagTTGCACAAGCTCCTGAATCT Alignment from Spaln_aa2Genome AGCAGATTATCTCTGGAGGACCAGAATGAAATGTCGCTGCTCACAGCTCTGACG-GAGATCTTGGACAATGCAGATTCTGAGAACCTGTCCCCTTTTGACACCATTCCTGATTCAGAGCTGCTCGTGTCCCCTCGGGAGAGCTCCTCT------------------------------CTGCACAAGCTGCTCAATCT gtgatggattcagcctagaaggttagcaatttacttctgtttatttttagAGCAGATTGTCTCTGAAGGACCAAAATGAAATGTCTCTGCTTACACCTCTGATGcGAAATATTGGACAATGCAGACTCTGAGAACCTGTCCCCATTTGACACCATCTCTGACTCTGGGCTACTGGTGTCAGCTTGGGAGAGTTCATCTGTAGCTGACTTTATTCTTGTTGCCTTGCAGTTGCACAAGCTCCTGAATCT Alignment from Spaln_nt2Genome AGCAGATTATCTCTGGAGGACCAGAATGAAATGTCGCTGCTCACAGCTCTGACG-GAGATCTTGGACAATGCAGATTCTGAGAACCTGTCCCCTTTTGACACCATTCCTGATTCAGAGCTGCTCGTGTCCCCTCGGGAGA GCTCCTCTCTGCACAAGCTG gtgatggattcagcctagaaggttagcaatttacttctgtttatttttagAGCAGATTGTCTCTGAAGGACCAAAATGAAATGTCTCTGCTTACACCTCTGATGCGAAATATTGGACAATGCAGACTCTGAGAACCTGTCCCCATTTGACACCATCTCTGACTCTGGGCTACTGGTGTCAGCTTGGGAGAgttcatctgtagctgactttattcttgttgccttgcag--------TTGCACAAGCTC Alignment from Pairagon AGCAGATTATCTCTGGAGGACCAGAATGAAATGTCGCTGCTCACAGCTCTGACG-GAGATCTTGGACAATGCAGATTCTGAGAACCTGTCCCCTTTTGACACCATTCCTGATTCAGAGCTGCTCGTGTCCCCTCGGGAGAGCTCCTCT CTGCACAAGCTGCTCAATCT gtgatggattcagcctagaaggttagcaatttacttctgtttatttttagAGCAGATTGTCTCTGAAGGACCAAAATGAAATGTCTCTGCTTACACCTCTGATGCGAAATATTGGACAATGCAGACTCTGAGAACCTGTCCCCATTTGACACCATCTCTGACTCTGGGCTACTGGTGTCAGCTTGGGAGAGTTCATCTgtagctgactttattcttgttgccttgcagTTGCACAAGCTCCTGAATCT Alignment from Exonerate_protein2genome AGCAGATTATCTCTGGAGGACCAGAATGAAATGTCGCTGCTCACAGCTCTG-ACGGAGATCTTGGACAATGCAGATTCTGAGAACCTGTCCCCTTTTGACACCATTCCTGATTCAGAGCTGCTCGTGTCCCCTCGGGAGAGCTCCTCT CTGCACAAGCTGCTCAATCT gtgatggattcagcctagaaggttagcaatttacttctgtttatttttagAGCAGATTGTCTCTGAAGGACCAAAATGAAATGTCTCTGCTTACACCTCTGATGCGAAATATTGGACAATGCAGACTCTGAGAACCTGTCCCCATTTGACACCATCTCTGACTCTGGGCTACTGGTGTCAGCTTGGGAGAGTTCATCTgtagctgactttattcttgttgccttgcagTTGCACAAGCTCCTGAATCT Alignment from Exonerate_coding2genome AGCAGATTATCTCTGGAGGACCAGAATGAAATGTCGCTGCTCACAGCTCTG-ACGGAGATCTTGGACAATGCAGATTCTGAGAACCTGTCCCCTTTTGACACCATTCCTGATTCAGAGCTGCTCGTGTCCCCTCGGGAGAGCTCCTCT CTGCACAAGCTGCTCAATCT gtgatggattcagcctagaaggttagcaatttacttctgtttatttttagAGCAGATTGTCTCTGAAGGACCAAAATGAAATGTCTCTGCTTACACCTCTGATGCGAAATATTGGACAATGCAGACTCTGAGAACCTGTCCCCATTTGACACCATCTCTGACTCTGGGCTACTGGTGTCAGCTTGGGAGAGTTCATCTgtagctgactttattcttgttgccttgcagTTGCACAAGCTCCTGAATCT Alignment from GeneWise AGCAGATTATCTCTGGAGGACCAGAATGAAATGTCGCTGCTCACAGCTCTG-ACGGAGATCTTGGACAATGCAGATTCTGAGAACCTGTCCCCTTTTGACACCATTCCTGATTCAGAGCTGCTCGTGTCCCCTCGGGAGAGCTCCTCT------------------------------CTGCACAAGCTGCTCAATCT gtgatggattcagcctagaaggttagcaatttacttctgtttatttttagAGCAGATTGTCTCTGAAGGACCAAAATGAAATGTCTCTGCTTACACCTCTGATGCGAAATATTGGACAATGCAGACTCTGAGAACCTGTCCCCATTTGACACCATCTCTGACTCTGGGCTACTGGTGTCAGCTTGGGAGAGTTCATCTGTAGCTGACTTTATTCTTGTTGCCTTGCAGTTGCACAAGCTCCTGAATCT #### Pprc1_ID9716_4 --> 0 - 0 Original Alignment CCCCTCGGGAGAGCTCCTCT CTGCACAAGCTGCTCAATCTCTCTCGGACACCCCCAGAACGTGACCTTATCACCCCAATTGACCCTTTGGGGCCC-AGCACAGGAAGTAGTCGGGTGAGTGGG CAGCTTGGGAGAGTTCATCTgtaagcgatgccgcgtttatttctccctagTTGCACAAGCTCCTGAATCTATCTCGCACACCCCCAGAATGTGATCTTGTCACCCCAATTGATCCTTTGGGGCCTCAGCACTGGAAGTAGTCGAGTGAGTGGTgttagcaatctagggcccttctgactctgacagagagcaagggtgtggtt Alignment from CESAR CCCCTCGGGAGAGCTCCTCT CTGCACAAGCTGCTCAATCTCTCTCGGACACCCCCAGAACGTGACCTTATCACCCCAATTGACCCTTTGGGGCCC-AGCACAGGAAGTAGTCGGGTGAGTGGG CAGCTTGGGAGAGTTCATCTgtagctgatgccgcgtttatttctccctagTTGCACAAGCTCCTGAATCTATCTCGCACACCCCCAGAATGTGATCTTGTCACCCCAATTGATCCTTTGGGGCCTCAGCACTGGAAGTAGTCGAGTGAGTGGTgttagcaatctagggcccttctgactctgacagagagcaagggtgtggtt Alignment from Spaln_aa2Genome TCACTTGACTTTGATACATTGTTGAAACAGGCCCAGAAGAACCTCAGGAGG tacttcccaaacattggaagcaaatattaccttgtttccctttgctctcag Alignment from Spaln_nt2Genome CCCCTCGGGAGA GCTCCTCTCTGCACAAGCTGCTCAATCTCTCTCGGACACCCCCAGAACGTGACCTTATCACCCCAATTGACCCTTTGGGGCC-CAGCACAGGAAGTAGTCGGGTGAGTGGG CAGCTTGGGAGAgttcatctgtaagcgatgccgcgtttatttctccctag--------TTGCACAAGCTCCTGAATCTATCTCGCACACCCCCAGAATGTGATCTTGTCACCCCAATTGATCCTTTGGGGCCTCAGCACTGGAAGTAGTCGAGTGAGTGGTgttagcaatctagggcccttctgactctgacagagagcaagggtgtggtt Alignment from Pairagon CCCCTCGGGAGAGCTCCTCT CTGCACAAGCTGCTCAATCTCTCTCGGACACCCCCAGAACGTGACCTTATCACCCCAATTGACCCTTTGGGGCC-CAGCACAGGAAGTAGTCGGGTGAGTGGG CAGCTTGGGAGAGTTCATCTgtaagcgatgccgcgtttatttctccctagTTGCACAAGCTCCTGAATCTATCTCGCACACCCCCAGAATGTGATCTTGTCACCCCAATTGATCCTTTGGGGCCTCAGCACTGGAAGTAGTCGAGTGAGTGGTgttagcaatctagggcccttctgactctgacagagagcaagggtgtggtt Alignment from Exonerate_protein2genome CCCCTCGGGAGAGCTCCTCT CTGCACAAGCTGCTCAATCTCTCTCGGACACCCCCAGAACGTGACCTTATCACCCCAATTGACCCTTTGGGGCCC-AGCACAGGAAGTAGTCGGGTGAGTGGG CAGCTTGGGAGAGTTCATCTgtaagcgatgccgcgtttatttctccctagTTGCACAAGCTCCTGAATCTATCTCGCACACCCCCAGAATGTGATCTTGTCACCCCAATTGATCCTTTGGGGCCTCAGCACTGGAAGTAGTCGAGTGAGTGGTgttagcaatctagggcccttctgactctgacagagagcaagggtgtggtt Alignment from Exonerate_coding2genome CCCCTCGGGAGAGCTCCTCT CTGCACAAGCTGCTCAATCTCTCTCGGACACCCCCAGAACGTGACCTTATCACCCCAATTGACCCTTTGGGGCCC-AGCACAGGAAGTAGTCGGGTGAGTGGG CAGCTTGGGAGAGTTCATCTgtaagcgatgccgcgtttatttctccctagTTGCACAAGCTCCTGAATCTATCTCGCACACCCCCAGAATGTGATCTTGTCACCCCAATTGATCCTTTGGGGCCTCAGCACTGGAAGTAGTCGAGTGAGTGGTgttagcaatctagggcccttctgactctgacagagagcaagggtgtggtt Alignment from GeneWise CCCCTCGGGAGAGCTCCTCT CTGCACAAGCTGCTCAATCTCTCTCGGACACCCCCAGAACGTGACCTTATCACCCCAATTGACCCTTTGGGGCCC-AGCACAGGAAGTAGTCGGGTGAGTGGG CAGCTTGGGAGAGTTCATCTgtaagcgatgccgcgtttatttctccctagTTGCACAAGCTCCTGAATCTATCTCGCACACCCCCAGAATGTGATCTTGTCACCCCAATTGATCCTTTGGGGCCTCAGCACTGGAAGTAGTCGAGTGAGTGGTgttagcaatctagggcccttctgactctgacagagagcaagggtgtggtt #### Prdx5_ID1853_4 --> 0 - 0 Original Alignment GTTCGGCTCCTGGCT-GACCCCACTGGAGCCTTTGGGAAG tgctgtgcctgagagttaacacaccaagacttaggcatctctgtcctcagGTTCGGCTCCTGGCTCGACCCCACTGGAGCCTTTGGGAAGgtgagcgtactttgctatgcattcagtccttggggaaccacatacagggg Alignment from CESAR GTTCGGCTCCTGGCT-GACCCCACTGGAGCCTTTGGGAAG tgctgtgcctgagagttaacacaccaagacttaggcatctctgtcctcagGTTCGGCTCCTGGCTCGACCCCACTGGAGCCTTTGGGAAGgtgagcgtactttgctatgcattcagtccttggggaaccacatacagggg Alignment from Spaln_aa2Genome GTTCGGCTCCTGGCT-GACCCCACTGGAGCCTTTGGGAAG tgctgtgcctgagagttaacacaccaagacttaggcatctctgtcctcagGTTCGGCTCCTGGCTcGACCCCACTGGAGCCTTTGGGAAGgtgagcgtactttgctatgcattcagtccttggggaaccacatacagggg Alignment from Spaln_nt2Genome GTTCGGCTCCTGGCT-GACCCCACTGGAGCCTTTGGGAAG tgctgtgcctgagagttaacacaccaagacttaggcatctctgtcctcagGTTCGGCTCCTGGCTCGACCCCACTGGAGCCTTTGGGAAGgtgagcgtactttgctatgcattcagtccttggggaaccacatacagggg Alignment from Pairagon GTTCGGCTCCTGGCT-GACCCCACTGGAGCCTTTGGGAAG tgctgtgcctgagagttaacacaccaagacttaggcatctctgtcctcagGTTCGGCTCCTGGCTCGACCCCACTGGAGCCTTTGGGAAGgtgagcgtactttgctatgcattcagtccttggggaaccacatacagggg Alignment from Exonerate_protein2genome GTTCGGCTCCTGGCT-GACCCCACTGGAGCCTTTGGGAAG tgctgtgcctgagagttaacacaccaagacttaggcatctctgtcctcagGTTCGGCTCCTGGCTCGACCCCACTGGAGCCTTTGGGAAGgtgagcgtactttgctatgcattcagtccttggggaaccacatacagggg Alignment from Exonerate_coding2genome GTTCGGCTCCTGGCT-GACCCCACTGGAGCCTTTGGGAAG tgctgtgcctgagagttaacacaccaagacttaggcatctctgtcctcagGTTCGGCTCCTGGCTCGACCCCACTGGAGCCTTTGGGAAGgtgagcgtactttgctatgcattcagtccttggggaaccacatacagggg Alignment from GeneWise tgctgtgcctgagagttaacacaccaagacttaggcatctctgtcctcaggttcggctcctggctcgaccccactggagcctttgggaaggtgagcgtactttgctatgcattcagtccttggggaaccacatacagggg #### Prpf19_ID3043_2 --> 2 - 1 Original Alignment tcTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAG-GAGCAGCTCATCGACATCAAAg gatatagcttttctgtgatattcttccttctctgttgtgtgttgttccagtcTCCAATGAAGTGCCAGAGCACCCATGCGTGTCGCCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGCGGGCAGCTCATTGATATTAAAggtacgggcctgatgcagcttcagagtatgacactcaatccgccaatatgg Alignment from CESAR tcTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAG-GAGCAGCTCATCGACATCAAAg gatatagcttttctgtgatattcttccttctctgttgtgtgttgttccagtcTCCAATGAAGTGCCAGAGCACCCATGCGTGTCGCCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGCGGGCAGCTCATTGATATTAAAggtacgggcctgatgcagcttcagagtatgacactcaatccgccaatatgg Alignment from Spaln_aa2Genome TCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAG-GAGCAGCTCATCGACATCAAAG gatatagcttttctgtgatattcttccttctctgttgtgtgttgttccagTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCGCCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGcGGGCAGCTCATTGATATTAAAGgtacgggcctgatgcagcttcagagtatgacactcaatccgccaatatgg Alignment from Spaln_nt2Genome TCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAG-GAGCAGCTCATCGACATCAAAG gatatagcttttctgtgatattcttccttctctgttgtgtgttgttccagTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCGCCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGCGGGCAGCTCATTGATATTAAAGgtacgggcctgatgcagcttcagagtatgacactcaatccgccaatatgg Alignment from Pairagon TCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAG-GAGCAGCTCATCGACATCAAAG gatatagcttttctgtgatattcttccttctctgttgtgtgttgttccagTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCGCCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGCGGGCAGCTCATTGATATTAAAGgtacgggcctgatgcagcttcagagtatgacactcaatccgccaatatgg Alignment from Exonerate_protein2genome ATCTGCTCGATCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAG-CAGCTCATCGACATCAAAG gatatagcttttctgtgatattcttccttctctgttgtgtGTTGTTCCAGTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCGCCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGCGGGCAGCTCATTGATATTAAAGgtacgggcctgatgcagcttcagagtatgacactcaatccgccaatatgg Alignment from Exonerate_coding2genome ATCTGCTCGATCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGGAG-CAGCTCATCGACATCAAAG gatatagcttttctgtgatattcttccttctctgttgtgtGTTGTTCCAGTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCGCCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGCGGGCAGCTCATTGATATTAAAGgtacgggcctgatgcagcttcagagtatgacactcaatccgccaatatgg Alignment from GeneWise TCCCTGATCTGC------TCGATCTCCAATGAAGTGCCAGAGCACCCGTGCGTGTCCCCTGTCTCTAATCATGTGTATGAGCGGCGACTCATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAG-GAGCAGCTCATCGACATCAAAG gatatagcttttctgtgatattcttcctTCTCTGTTGTGTGTTGTTCCAGTCTCCAATGAAGTGCCAGAGCACCCATGCGTGTCGCCTGTCTCTAACCATGTGTATGAGCAGCGACTTATTGAGAAGTACATTGCAGAGAATGGCACAGATCCTATCAACAACCAGCCTCTCTCAGAGCGGGCAGCTCATTGATATTAAAGgtacgggcctgatgcagcttcagagtatgacactcaatccgccaatatgg #### Prpf19_ID3044_3 --> 2 - 0 Original Alignment ttGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACC-AGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA gtgtgaaaagttgtagaggagcgatattctttgtttttctttcttgacagtaGCACACCCAATTCGACCCAAGCCTCCCTCTGCTACCCAGTATTCCAGCCATCCTAAAGGCCTTGCAAGATGAGTGGgtaatgctaattttatcattttttttttcgcagGATGCAGTCATGCTGCA Alignment from CESAR ttGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACC-AGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA gtgtgaaaagttgtagaggagcgatattctttgtttttctttcttgacagtaGCACACCCAATTCGACCCAAGCCTCCCTCTGCTACCCAGTATTCCAGCCATCCTAAAGGCCTTGCAAGATGAGTGGgtaatgctaatgcctgatagtgctttcccccagGATGCAGTCATGCTGCA Alignment from Spaln_aa2Genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACC-AGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA gtgtgaaaagttgtagaggagcgatattctttgtttttctttcttgacagTAGCACACCCAATTCGACCCAAGCCTCCCTCTGCTACCcAGTATTCCAGCCATCCTAAAGGCCTTGCAAGATGAGTGGgtaatgctaattttatcattttttttttcgcagGATGCAGTCATGCTGCA Alignment from Spaln_nt2Genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCA-CCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA gtgtgaaaagttgtagaggagcgatattctttgtttttctttcttgacagTAGCACACCCAATTCGACCCAAGCCTCCCTCTGCTACCCAGTATTCCAGCCATCCTAAAGGCCTTGCAAGATGAGTGGgtaatgctaattttatcattttttttttcgcagGATGCAGTCATGCTGCA Alignment from Pairagon TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCA-CCAGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA gtgtgaaaagttgtagaggagcgatattctttgtttttctttcttgacagTAGCACACCCAATTCGACCCAAGCCTCCCTCTGCTACCCAGTATTCCAGCCATCCTAAAGGCCTTGCAAGATGAGTGGgtaatgctaattttatcattttttttttcgcagGATGCAGTCATGCTGCA Alignment from Exonerate_protein2genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACC-AGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA gtgtgaaaagttgtagaggagcgatattctttgtttttctttcttgacagTAGCACACCCAATTCGACCCAAGCCTCCCTCTGCTACCCAGTATTCCAGCCATCCTAAAGGCCTTGCAAGATGAGTGGgtaatgctaattttatcattttttttttcgcagGATGCAGTCATGCTGCA Alignment from Exonerate_coding2genome TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACC-AGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA gtgtgaaaagttgtagaggagcgatattctttgtttttctttcttgacagTAGCACACCCAATTCGACCCAAGCCTCCCTCTGCTACCCAGTATTCCAGCCATCCTAAAGGCCTTGCAAGATGAGTGGgtaatgctaattttatcattttttttttcgcagGATGCAGTCATGCTGCA Alignment from GeneWise TTGCTCACCCAATCCGACCCAAGCCTCCCTCCGCCACC-AGCATCCCAGCCATTCTGAAAGCCTTGCAGGATGAGTGG---------------------------------GATGCAGTCATGCTGCA gtgtgaaaagttgtagaggagcgatattctttgtttttctttcttgacagTAGCACACCCAATTCGACCCAAGCCTCCCTCTGCTACCCAGTATTCCAGCCATCCTAAAGGCCTTGCAAGATGAGTGGGTAATGCTAATTTTATCATTTTTTTTTTCGCAGGATGCAGTCATGCTGCA #### Prpf19_ID3045_4 --> 0 - 1 Original Alignment CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCAC-AGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAg CCTTGCAAGATGAGTGGgtgagtctaatgcctgatagtgctttcccccagGATGCAGTCATGCTGCACCAGCTTCACTCTTCGCCAACAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAggtgaagcacatttcactgtagactccccaagtctatctgcttcccttgca Alignment from CESAR CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCAC-AGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAg CCTTGCAAGATGAGTGGgtaatgctaatgcctgatagtgctttcccccagGATGCAGTCATGCTGCACCAGCTTCACTCTTCGCCAACAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAggtgaagcacatttcactgtagactccccaatccaacccttcttccccaca Alignment from Spaln_aa2Genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCAC-AGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtgagtctaatgcctgatagtgctttcccccagGATGCAGTCATGCTGCACcAGCTTCACTCTTCGCCAACAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtgaagcacatttcactgtagactccccaagtctatctgcttcccttgca Alignment from Spaln_nt2Genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA-CAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtgagtctaatgcctgatagtgctttcccccagGATGCAGTCATGCTGCACCAGCTTCACTCTTCGCCAACAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtgaagcacatttcactgtagactccccaagtctatctgcttcccttgca Alignment from Pairagon CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCA-CAGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtgagtctaatgcctgatagtgctttcccccagGATGCAGTCATGCTGCACCAGCTTCACTCTTCGCCAACAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtgaagcacatttcactgtagactccccaagtctatctgcttcccttgca Alignment from Exonerate_protein2genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCAC-AGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtgagtctaatgcctgatagtgctttcccccagGATGCAGTCATGCTGCACCAGCTTCACTCTTCGCCAACAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtgaagcacatttcactgtagactccccaagtctatctgcttcccttgca Alignment from Exonerate_coding2genome CCTTGCAGGATGAGTGG GATGCAGTCATGCTGCAC-AGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAG CCTTGCAAGATGAGTGGgtgagtctaatgcctgatagtgctttcccccagGATGCAGTCATGCTGCACCAGCTTCACTCTTCGCCAACAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGgtgaagcacatttcactgtagactccccaagtctatctgcttcccttgca Alignment from GeneWise CCTTGCAGGATGAGTGG---------------------------------GATGCAGTCATGCTGCAC-AGCTTCACTCTTCGCCAGCAACTGCAGACAACCCGCCAGGAGCTGTCCCATGCTCTGTACCAACACGATGCTGCCTGCCGAGTCATTGCCCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAA--------------------------------------------------- CCTTGCAAGATGAGTGGGTGAGTCTAATGCCTGATAGTGCTTTCCCCCAGGATGCAGTCATGCTGCACCAGCTTCACTCTTCGCCAACAACTGCAGACAACCCGCCAGGAACTGTGCCATGCTCTGTACCAACATGATGCTGCCTGCCGAGTCATTGCTCGGCTCACCAAAGAGGTCACTGCTGCTCGAGAAGGTGAAGCACATTTCACTGTAGACTCCCCAAGTCTATCTGCTTCCCTTGCA #### Prpf19_ID3048_7 --> 0 - 0 Original Alignment CTTCAAGACAAGGCTACTGTG-CTAACCACGGAGCGTAAGAAG gaaatacagcccactctataattattcgaccctacttgattcatttctagCTTCAAGACAAGGCCACTGTGCTTAACCACAGAACAAAAGAAAgtcaaactggccattatgtggatatctgcatctttggagagaagtgtgcg Alignment from CESAR CTTCAAGACAAGGCTACTGTGCTA-ACCACGGAGCGTAAGAAG gaaatacagcccactctataattattcgaccctacttgattcatttctagCTTCAAGACAAGGCCACTGTGCTTAACCACAGAACAAAAGAAAgtcaaactggccattatgtggatatctgcatctttggagagaagtgtgcg Alignment from Spaln_aa2Genome CTTCAAGACAAGGCTACTGTGCTAACCACGGAGCGTAAGAAGAGAG gaaatacagcccactctataattattcgaccctacttgattcatttctagCTTCAAGACAAGGCCACTGTGCTT---AACCACAGAACAAAAGAAAgtcaaactggccattatgtggatatctgcatctttggagagaagtgtgcg Alignment from Spaln_nt2Genome CTTCAAGACAAGGCTACTGTGCT-AACCACGGAGCGTAAGAAG gaaatacagcccactctataattattcgaccctacttgattcatttctagCTTCAAGACAAGGCCACTGTGCTTAACCACAGAACAAAAGAAAgtcaaactggccattatgtggatatctgcatctttggagagaagtgtgcg Alignment from Pairagon CTTCAAGACAAGGCTACTGTGC-TAACCACGGAGCGTAAGAAG gaaatacagcccactctataattattcgaccctacttgattcatttctagCTTCAAGACAAGGCCACTGTGCTTAACCACAGAACAAAAGAAAgtcaaactggccattatgtggatatctgcatctttggagagaagtgtgcg Alignment from Exonerate_protein2genome CTTCAAGACAAGGCTACTGTG-CTAACCACGGAGCGTAAGAAG gaaatacagcccactctataattattcgaccctacttgattcatttctagCTTCAAGACAAGGCCACTGTGCTTAACCACAGAACAAAAGAAAgtcaaactggccattatgtggatatctgcatctttggagagaagtgtgcg Alignment from Exonerate_coding2genome gaaatacagcccactctataattattcgaccctacttgattcatttctagcttcaagacaaggccactgtgcttaaccacagaacaaaagaaagtcaaactggccattatgtggatatctgcatctttggagagaagtgtgcg Alignment from GeneWise ------ gaaatacagcccactctataattattcgaccctacttgattcatttctagcttcaagacaaggccactgtgcttaaccacagaacaaaagaaagtcaaactggccattatgtggatatctgcatctttggagagaagTGTGCG #### Prpf19_ID3050_9 --> 0 - 1 Original Alignment GGTCTACACAGTGCTAGCATT-CCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTg aggggccttgggcactgggaggcaattaattcctgtttctttgttcttagGGTCTACACAGTGCTAGTATTCCCCGGGATCCTTGCTCTTGACCTCTGTCCCTCAGACACTAACAAGATTCTCACTggtaactgtgggcgtgacttaatattgaacgatagaccctgcatcctcaga Alignment from CESAR GGTCTACACAGTGCTAGCATT-CCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTg aggggccttgggcactgggaggcaattaattcctgtttctttgttcttagGGTCTACACAGTGCTAGTATTCCCCGGGATCCTTGCTCTTGACCTCTGTCCCTCAGACACTAACAAGATTCTCACTggtaactgtgggcgtgacttaatattgaacgatagaccctgcatcctcaga Alignment from Spaln_aa2Genome GGTCTACACAGTGCTAGCATTCCT-GGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG aggggccttgggcactgggaggcaattaattcctgtttctttgttcttagGGTCTACACAGTGCTAGTATTCCCcGGGATCCTTGCTCTTGACCTCTGTCCCTCAGACACTAACAAGATTCTCACTGgtaactgtgggcgtgacttaatattgaacgatagaccctgcatcctcaga Alignment from Spaln_nt2Genome GGTCTACACAGTGCTAGCATTCCT-GGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG aggggccttgggcactgggaggcaattaattcctgtttctttgttcttagGGTCTACACAGTGCTAGTATTCCCCGGGATCCTTGCTCTTGACCTCTGTCCCTCAGACACTAACAAGATTCTCACTGgtaactgtgggcgtgacttaatattgaacgatagaccctgcatcctcaga Alignment from Pairagon GGTCTACACAGTGCTAGCATT-CCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG aggggccttgggcactgggaggcaattaattcctgtttctttgttcttagGGTCTACACAGTGCTAGTATTCCCCGGGATCCTTGCTCTTGACCTCTGTCCCTCAGACACTAACAAGATTCTCACTGgtaactgtgggcgtgacttaatattgaacgatagaccctgcatcctcaga Alignment from Exonerate_protein2genome GGTCTACACAGTGCTAGCATT-CCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG aggggccttgggcactgggaggcaattaattcctgtttctttgttcttagGGTCTACACAGTGCTAGTATTCCCCGGGATCCTTGCTCTTGACCTCTGTCCCTCAGACACTAACAAGATTCTCACTGgtaactgtgggcgtgacttaatattgaacgatagaccctgcatcctcaga Alignment from Exonerate_coding2genome GGTCTACACAGTGCTAGCATT-CCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG aggggccttgggcactgggaggcaattaattcctgtttctttgttcttagGGTCTACACAGTGCTAGTATTCCCCGGGATCCTTGCTCTTGACCTCTGTCCCTCAGACACTAACAAGATTCTCACTGgtaactgtgggcgtgacttaatattgaacgatagaccctgcatcctcaga Alignment from GeneWise GGTCTACACAGTGCTAGC-ATTCCTGGGATTCTCGCTCTGGACCTGTGTCCCTCAGACACCAACAAGATTCTCACTG aggggccttgggcactgggaggcaattaattcctgtttctttgttcttagGGTCTACACAGTGCTAGTATTCCCCGGGATCCTTGCTCTTGACCTCTGTCCCTCAGACACTAACAAGATTCTCACTGgtaactgtgggcgtgacttaatattgaacgatagaccctgcatcctcaga #### Prpf19_ID3053_12 --> 0 - 1 Original Alignment TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACT-AAGGTGACAGATGAGACCTCCGGCTGCt tttaaggcaccagaccatatttggattgactcagggatttgttccgccagTACTGGGCCTTCTTTGACATCCAGACAGGGCGTGTGCTCACTCAAGGTGACAGATGAGACCTCTGGCTGCtgtactggattactgaaacacttttctattttggcagtagtttcacagtgt Alignment from CESAR TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACT-AAGGTGACAGATGAGACCTCCGGCTGCt tttaaggcaccagaccatatttggattgactcagggatttgttccgccagTACTGGGCCTTCTTTGACATCCAGACAGGGCGTGTGCTCACTCAAGGTGACAGATGAGACCTCTGGCTGCtgtactggattactgaaacacttttctattttggcagtagtttcacagtgt Alignment from Spaln_aa2Genome TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACT-AAGGTGACAGATGAGACCTCCGGCTGCT tttaaggcaccagaccatatttggattgactcagggatttgttccgccagTACTGGGCCTTCTTTGACATCCAGACAGGGCGTGTGCTCACTcAAGGTGACAGATGAGACCTCTGGCTGCTgtactggattactgaaacacttttctattttggcagtagtttcacagtgt Alignment from Spaln_nt2Genome TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACT-AAGGTGACAGATGAGACCTCCGGCTGCT tttaaggcaccagaccatatttggattgactcagggatttgttccgccagTACTGGGCCTTCTTTGACATCCAGACAGGGCGTGTGCTCACTCAAGGTGACAGATGAGACCTCTGGCTGCTgtactggattactgaaacacttttctattttggcagtagtttcacagtgt Alignment from Pairagon TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACT-AAGGTGACAGATGAGACCTCCGGCTGCT tttaaggcaccagaccatatttggattgactcagggatttgttccgccagTACTGGGCCTTCTTTGACATCCAGACAGGGCGTGTGCTCACTCAAGGTGACAGATGAGACCTCTGGCTGCTgtactggattactgaaacacttttctattttggcagtagtttcacagtgt Alignment from Exonerate_protein2genome TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACT-AAGGTGACAGATGAGACCTCCGGCTGCT tttaaggcaccagaccatatttggattgactcagggatttgttccgccagTACTGGGCCTTCTTTGACATCCAGACAGGGCGTGTGCTCACTCAAGGTGACAGATGAGACCTCTGGCTGCTgtactggattactgaaacacttttctattttggcagtagtttcacagtgt Alignment from Exonerate_coding2genome TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACT-AAGGTGACAGATGAGACCTCCGGCTGCT tttaaggcaccagaccatatttggattgactcagggatttgttccgccagTACTGGGCCTTCTTTGACATCCAGACAGGGCGTGTGCTCACTCAAGGTGACAGATGAGACCTCTGGCTGCTgtactggattactgaaacacttttctattttggcagtagtttcacagtgt Alignment from GeneWise TACTGGGCCTTCTCTGACATCCAGACAGGGCGTGTGCTCACT-AAGGTGACAGATGAGACCTCCGGCTGCT tttaaggcaccagaccatatttggattgactcagggatttgttccgccagTACTGGGCCTTCTTTGACATCCAGACAGGGCGTGTGCTCACTCAAGGTGACAGATGAGACCTCTGGCTGCTgtactggattactgaaacacttttctattttggcagtagtttcacagtgt #### Prpf19_ID3054_13 --> 2 - 0 Original Alignment ctCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGA-ACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG agtatccttgggacgttatctgtgcaaattgtttgtttggttttttttagccCTTACCTGTGCACAGTTCCACCCTGATGGGCTCACCTTTGGACACTGGGACTATGGACTCCCAAATTAAGATTTGGGACCTAAAGgtgaggggacatatagacatgaacaaagggatgtagtggtggggaattga Alignment from CESAR ctCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGA-ACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG agtatccttgggacgttatctgtgcaaattgtttgtttggttttttttagccCTTACCTGTGCACAGTTCCACCCTGATGGGCTCACCTTTGGACACTGGGACTATGGACTCCCAAATTAAGATTTGGGACCTAAAGgtgaggggacatatagacatgaacaaagggatgtagtggtggggaattga Alignment from Spaln_aa2Genome CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGA-ACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG agtatccttgggacgttatctgtgcaaattgtttgtttggttttttttagCCCTTACCTGTGCACAGTTCCACCCTGATGGGCTCACCTTTGGAcACTGGGACTATGGACTCCCAAATTAAGATTTGGGACCTAAAGgtgaggggacatatagacatgaacaaagggatgtagtggtggggaattga Alignment from Spaln_nt2Genome CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGA-ACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG agtatccttgggacgttatctgtgcaaattgtttgtttggttttttttagCCCTTACCTGTGCACAGTTCCACCCTGATGGGCTCACCTTTGGACACTGGGACTATGGACTCCCAAATTAAGATTTGGGACCTAAAGgtgaggggacatatagacatgaacaaagggatgtagtggtggggaattga Alignment from Pairagon CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGA-ACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG agtatccttgggacgttatctgtgcaaattgtttgtttggttttttttagCCCTTACCTGTGCACAGTTCCACCCTGATGGGCTCACCTTTGGACACTGGGACTATGGACTCCCAAATTAAGATTTGGGACCTAAAGgtgaggggacatatagacatgaacaaagggatgtagtggtggggaattga Alignment from Exonerate_protein2genome CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGA-ACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG agtatccttgggacgttatctgtgcaaattgtttgtttggttttttttagCCCTTACCTGTGCACAGTTCCACCCTGATGGGCTCACCTTTGGACACTGGGACTATGGACTCCCAAATTAAGATTTGGGACCTAAAGgtgaggggacatatagacatgaacaaagggatgtagtggtggggaattga Alignment from Exonerate_coding2genome CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGA-ACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG agtatccttgggacgttatctgtgcaaattgtttgtttggttttttttagCCCTTACCTGTGCACAGTTCCACCCTGATGGGCTCACCTTTGGACACTGGGACTATGGACTCCCAAATTAAGATTTGGGACCTAAAGgtgaggggacatatagacatgaacaaagggatgtagtggtggggaattga Alignment from GeneWise CTCTTACCTGTGCACAGTTCCACCCTGATGGGCTCATCTTTGGA-ACAGGAACCATGGACTCCCAGATCAAGATCTGGGACTTGAAG agtatccttgggacgttatctgtgcaaattgtttgtttggttttttttagCCCTTACCTGTGCACAGTTCCACCCTGATGGGCTCACCTTTGGACACTGGGACTATGGACTCCCAAATTAAGATTTGGGACCTAAAGgtgaggggacatatagacatgaacaaagggatgtagtggtggggaattga #### Pygm_ID1678_2 --> 0 - 0 Original Alignment AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACA-CTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG atggagacccataaattgagacctttcgtgaatgttctttcttcttacagAGGATTTATTATCTGTCTTTGGAGTTCTACATGGGCCGGACACCTACAAAACACCATGGTAAATCTTGCCCTAGGGAATGCCTGTGATGAGGCTACTTACCAGgtacgggataaagcggcgtctatgtaagcatttgggttttactttctctc Alignment from CESAR AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACA-CTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG atggagacccataaattgagacctttcgtgaatgttctttcttcttacagAGGATTTATTATCTGTCTTTGGAGTTCTACATGGGCCGGACACCTACAAAACACCATGGTAAATCTTGCCCTAGGGAATGCCTGTGATGAGGCTACTTACCAGgtacgggataaagcggcgtctatgtaagcatttgggttttatgtgtgtga Alignment from Spaln_aa2Genome AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACA-CTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG atggagacccataaattgagacctttcgtgaatgttctttcttcttacagAGGATTTATTATCTGTCTTTGGAGTTCTACATGGGCCGGACAcCTACAAAACACCATGGTAAATCTTGCCCTAGGGAATGCCTGTGATGAGGCTACTTACCAGgtacgggataaagcggcgtctatgtaagcatttgggttttactttctctc Alignment from Spaln_nt2Genome AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACAC-TGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG atggagacccataaattgagacctttcgtgaatgttctttcttcttacagAGGATTTATTATCTGTCTTTGGAGTTCTACATGGGCCGGACACCTACAAAACACCATGGTAAATCTTGCCCTAGGGAATGCCTGTGATGAGGCTACTTACCAGgtacgggataaagcggcgtctatgtaagcatttgggttttactttctctc Alignment from Pairagon AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACA-CTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG atggagacccataaattgagacctttcgtgaatgttctttcttcttacagAGGATTTATTATCTGTCTTTGGAGTTCTACATGGGCCGGACACCTACAAAACACCATGGTAAATCTTGCCCTAGGGAATGCCTGTGATGAGGCTACTTACCAGgtacgggataaagcggcgtctatgtaagcatttgggttttactttctctc Alignment from Exonerate_protein2genome AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACA-CTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG atggagacccataaattgagacctttcgtgaatgttctttcttcttacagAGGATTTATTATCTGTCTTTGGAGTTCTACATGGGCCGGACACCTACAAAACACCATGGTAAATCTTGCCCTAGGGAATGCCTGTGATGAGGCTACTTACCAGgtacgggataaagcggcgtctatgtaagcatttgggttttactttctctc Alignment from Exonerate_coding2genome atggagacccataaattgagacctttcgtgaatgttctttcttcttacagaggatttattatctgtctttggagttctacatgggccggacacctacaaaacaccatggtaaatcttgccctagggaatgcctgtgatgaggctacttaccaggtacgggataaagcggcgtctatgtaagcatttgggttttactttctctc Alignment from GeneWise AGGATCTACTACCTGTCTTTGGAGTTCTACATGGGCCGGACA-CTGCAGAACACCATGGTGAACCTGGCCTTGGAGAACGCCTGTGATGAGGCCACTTACCAG atggagacccataaattgagacctttcgtgaatgttctttcttcttacagAGGATTTATTATCTGTCTTTGGAGTTCTACATGGGCCGGACACCTACAAAACACCATGGTAAATCTTGCCCTAGGGAATGCCTGTGATGAGGCTACTTACCAGgtacgggataaagcggcgtctatgtaagcatttgggttttactttctctc #### Pygm_ID1680_4 --> 2 - 0 Original Alignment ctTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATC-CGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG ggtatttgcagcctttaggtttatacagggcagcgtgccttccttctcagctTGCTTTCTGGACTCTATGGCCCCCCTAGGGCTTGCTGCTTATGGCTATGGGATCCCGCTATGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtgagaaatcctaaccctaatatcttttggggtttagtcataataattag Alignment from CESAR ctTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATC-CGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG ggtatttgcagcctttaggtttatacagggcagcgtgccttccttctcagctTGCTTTCTGGACTCTATGGCCCCCCTAGGGCTTGCTGCTTATGGCTATGGGATCCCGCTATGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtgagaaatcctaaccctaatatcttttggggtttagtcataataattag Alignment from Spaln_aa2Genome CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATC-CGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG ggtatttgcagcctttaggtttatacagggcagcgtgccttccttctcagCTTGCTTTCTGGACTCTATGGCCCCCCTAGGGCTTGCTGCTTATGGCTATGGGATCcCGCTATGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtgagaaatcctaaccctaatatcttttggggtttagtcataataattag Alignment from Spaln_nt2Genome CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGAT-CCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG ggtatttgcagcctttaggtttatacagggcagcgtgccttccttctcagCTTGCTTTCTGGACTCTATGGCCCCCCTAGGGCTTGCTGCTTATGGCTATGGGATCCCGCTATGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtgagaaatcctaaccctaatatcttttggggtttagtcataataattag Alignment from Pairagon CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGAT-CCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG ggtatttgcagcctttaggtttatacagggcagcgtgccttccttctcagCTTGCTTTCTGGACTCTATGGCCCCCCTAGGGCTTGCTGCTTATGGCTATGGGATCCCGCTATGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtgagaaatcctaaccctaatatcttttggggtttagtcataataattag Alignment from Exonerate_protein2genome CTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGGATC-CGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAGATGGAAGAAGCTGATGACTGG ggtatttgcagcctttaggtttatacagggcagcgtgccttccttctcagCTTGCTTTCTGGACTCTATGGCCCCCCTAGGGCTTGCTGCTTATGGCTATGGGATCCCGCTATGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGGTGAGAAATCCTAACCCTAATatcttttggggtttagtcataataattag Alignment from Exonerate_coding2genome ggtatttgcagcctttaggtttatacagggcagcgtgccttccttctcagcttgctttctggactctatggcccccctagggcttgctgcttatggctatgggatcccgctatgagtttggaatttttaatcagaagatctgtgggggttggcaggtgagaaatcctaaccctaatatcttttggggtttagtcataataattag Alignment from GeneWise -------------------------------------------------GCTTGCTTTTTGGACTCCATGGCCACCCTGGGGCTCGCTGCCTATGGCTATGGG-ATCCGCTATGAGTTTGGGATTTTTAATCAGAAGATCTGTGGGGGCTGGCAG GGTATTTGCAGCCTTTAGGTTTATACAGGGCAGCGTGCCTTCCTTCTCAGCTTGCTTTCTGGACTCTATGGCCCCCCTAGGGCTTGCTGCTTATGGCTATGGGATCCCGCTATGAGTTTGGAATTTTTAATCAGAAGATCTGTGGGGGTTGGCAGgtgagaaatcctaaccctaatatcttttggggtttagtcataataattag #### Pygm_ID1686_10 --> 0 - 0 Original Alignment GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGC-TGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactaatgttccaccgtataccctcccacagGCCTGGGATGTTACAGTAAAGACTTGCGCCTACACTAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCCTGGCCTGTGCATCTCATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtaaggataggatgatgagaaaggagctcgggcatgaagatgtatgaatc Alignment from CESAR GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGC-TGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactaatgttccaccgtataccctcccacagGCCTGGGATGTTACAGTAAAGACTTGCGCCTACACTAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCCTGGCCTGTGCATCTCATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtaaggataggatgatgagaaaggagctcgggcatgaagatgtatgaatc Alignment from Spaln_aa2Genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGC-TGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactaatgttccaccgtataccctcccacagGCCTGGGATGTTACAGTAAAGACTTGCGCCTACACTAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCcTGGCCTGTGCATCTCATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtaaggataggatgatgagaaaggagctcgggcatgaagatgtatgaatc Alignment from Spaln_nt2Genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCG-CTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactaatgttccaccgtataccctcccacagGCCTGGGATGTTACAGTAAAGACTTGCGCCTACACTAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCCTGGCCTGTGCATCTCATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtaaggataggatgatgagaaaggagctcgggcatgaagatgtatgaatc Alignment from Pairagon GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCG-CTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactaatgttccaccgtataccctcccacagGCCTGGGATGTTACAGTAAAGACTTGCGCCTACACTAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCCTGGCCTGTGCATCTCATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtaaggataggatgatgagaaaggagctcgggcatgaagatgtatgaatc Alignment from Exonerate_protein2genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGC-TGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactaatgttccaccgtataccctcccacagGCCTGGGATGTTACAGTAAAGACTTGCGCCTACACTAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCCTGGCCTGTGCATCTCATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtaaggataggatgatgagaaaggagctcgggcatgaagatgtatgaatc Alignment from Exonerate_coding2genome GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAGCGC-TGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactaatgttccaccgtataccctcccacagGCCTGGGATGTTACAGTAAAGACTTGCGCCTACACTAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCCTGGCCTGTGCATCTCATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtaaggataggatgatgagaaaggagctcgggcatgaagatgtatgaatc Alignment from GeneWise GCCTGGGACGTAACAGTGAAGACCTGTGCCTACACCAACCACACGGTGCTGCCTGAAGCCCTGGAG-CGCTGGCCAGTGCACCTCATGGAGACACTGCTGCCCCGCCACTTGCAGATCATTTACGAGATCAACCAGCGTTTCCTTAAC gcaaagatgtgtggaggtcaactaatgttccaccgtataccctcccacagGCCTGGGATGTTACAGTAAAGACTTGCGCCTACACTAACCACACAGTGCTGCCTGAAGCCCTGGAGCGCCTGGCCTGTGCATCTCATGGAGACACTGCTACCCCGTCACTTGCAGATAATTTATGAGATTAATCAGTGTTTCCTAAATgtaaggataggatgatgagaaaggagctcgggcatgaagatgtatgaatc #### Pygm_ID1687_11 --> 0 - 2 Original Alignment CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAAC-ATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCat gaaggggaagacttctgaagcaggggtcaagcaatcttttctttctctagCGGGTGGCAGCTGCATCCCCAGGGGATGTAGATAGGTTGTGGCGCATGTCACTTGTAGAGGATGGAGCAGTGAGGCGCATCAACCATGTCACACCTGTGCATTACAGGCTCACACGCTGTCAACAGTGTGGCTCGAATCCATTCAGAGATCCTCAAAAAAACCatgtaggtgtaacttcatctagattgagtggggcaacagggccacaaggtag Alignment from CESAR CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAAC-ATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCat gaaggggaagacttctgaagcaggggtcaagcaatcttttctttctctagCGGGTGGCAGCTGCATCCCCAGGGGATGTAGATAGGTTGTGGCGCATGTCACTTGTAGAGGATGGAGCAGTGAGGCGCATCAACCATGTCACACCTGTGCATTACAGGCTCACACGCTGTCAACAGTGTGGCTCGAATCCATTCAGAGATCCTCAAAAAAACCatgtaggtgtaacttcatctagattgagtggggcaacagggccacaaggtag Alignment from Spaln_aa2Genome CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAAC-ATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCAT gaaggggaagacttctgaagcaggggtcaagcaatcttttctttctctagCGGGTGGCAGCTGCATCCCCAGGGGATGTAGATAGGTTGTGGCGCATGTCACTTGTAGAGGATGGAGCAGTGAGGCGCATCAACcATGTCACACCTGTGCATTACAGGCTCACACGCTGTCAACAGTGTGGCTCGAATCCATTCAGAGATCCTCAAAAAAACCATgtaggtgtaacttcatctagattgagtggggcaacagggccacaaggtag Alignment from Spaln_nt2Genome CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAA-CATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCAT gaaggggaagacttctgaagcaggggtcaagcaatcttttctttctctagCGGGTGGCAGCTGCATCCCCAGGGGATGTAGATAGGTTGTGGCGCATGTCACTTGTAGAGGATGGAGCAGTGAGGCGCATCAACCATGTCACACCTGTGCATTACAGGCTCACACGCTGTCAACAGTGTGGCTCGAATCCATTCAGAGATCCTCAAAAAAACCATgtaggtgtaacttcatctagattgagtggggcaacagggccacaaggtag Alignment from Pairagon CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAA-CATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCAT gaaggggaagacttctgaagcaggggtcaagcaatcttttctttctctagCGGGTGGCAGCTGCATCCCCAGGGGATGTAGATAGGTTGTGGCGCATGTCACTTGTAGAGGATGGAGCAGTGAGGCGCATCAACCATGTCACACCTGTGCATTACAGGCTCACACGCTGTCAACAGTGTGGCTCGAATCCATTCAGAGATCCTCAAAAAAACCATgtaggtgtaacttcatctagattgagtggggcaacagggccacaaggtag Alignment from Exonerate_protein2genome CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAAC-ATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCAT gaaggggaagacttctgaagcaggggtcaagcaatcttttctttctctagCGGGTGGCAGCTGCATCCCCAGGGGATGTAGATAGGTTGTGGCGCATGTCACTTGTAGAGGATGGAGCAGTGAGGCGCATCAACCATGTCACACCTGTGCATTACAGGCTCACACGCTGTCAACAGTGTGGCTCGAATCCATTCAGAGATCCTCAAAAAAACCATgtaggtgtaacttcatctagattgagtggggcaacagggccacaaggtag Alignment from Exonerate_coding2genome CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAAC-ATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCAT gaaggggaagacttctgaagcaggggtcaagcaatcttttctttctctagCGGGTGGCAGCTGCATCCCCAGGGGATGTAGATAGGTTGTGGCGCATGTCACTTGTAGAGGATGGAGCAGTGAGGCGCATCAACCATGTCACACCTGTGCATTACAGGCTCACACGCTGTCAACAGTGTGGCTCGAATCCATTCAGAGATCCTCAAAAAAACCATgtaggtgtaacttcatctagattgagtggggcaacagggccacaaggtag Alignment from GeneWise CGGGTGGCGGCTGCATTCCCTGGGGACGTAGATAGGCTGCGGCGCATGTCACTCGTGGAGGAAGGAGCAGTGAAACGCATCAAC-ATGGCACACCTGTGCATTGCTGGCTCGCACGCTGTCAACGGCGTGGCTCGCATCCATTCGGAGATCCTCAAGAAAACCAT gaaggggaagacttctgaagcaggggtcaagcaatcttttctttctctagCGGGTGGCAGCTGCATCCCCAGGGGATGTAGATAGGTTGTGGCGCATGTCACTTGTAGAGGATGGAGCAGTGAGGCGCATCAACCATGTCACACCTGTGCATTACAGGCTCACACGCTGTCAACAGTGTGGCTCGAATCCATTCAGAGATCCTCAAAAAAACCATgtaggtgtaacttcatctagattgagtggggcaacagggccacaaggtag #### Rab3il1_ID2648_4 --> 0 - 0 Original Alignment GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAG-GCTTGGGGCAAG cctatttctgtccaggtttttttagtgatctcaactcctctgttctgcagGAAGCCCACAAAATGGTGCAGGAAGCAAACATGAAACAGGCAACATCAGAAAAGCAGTTGAAGGAACGCTTGGGGCAAGgtaatggctagtgccatgcaccttacactgtgcgcctatgcagccctgtt Alignment from CESAR GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAG-GCTTGGGGCAAG cctatttctgtccaggtttttttagtgatctcaactcctctgttctgcagGAAGCCCACAAAATGGTGCAGGAAGCAAACATGAAACAGGCAACATCAGAAAAGCAGTTGAAGGAACGCTTGGGGCAAGgtaatggctagtgccatgcaccttacactgtgcgcctatgcagccctgtt Alignment from Spaln_aa2Genome GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAG-GCTTGGGGCAAG cctatttctgtccaggtttttttagtgatctcaactcctctgttctgcagGAAGCCCACAAAATGGTGCAGGAAGCAAACATGAAACAGGCAACATCAGAAAAGCAGTTGAAGGAAcGCTTGGGGCAAGgtaatggctagtgccatgcaccttacactgtgcgcctatgcagccctgtt Alignment from Spaln_nt2Genome GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAG-GCTTGGGGCAAG cctatttctgtccaggtttttttagtgatctcaactcctctgttctgcagGAAGCCCACAAAATGGTGCAGGAAGCAAACATGAAACAGGCAACATCAGAAAAGCAGTTGAAGGAACGCTTGGGGCAAGgtaatggctagtgccatgcaccttacactgtgcgcctatgcagccctgtt Alignment from Pairagon GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAG-GCTTGGGGCAAG cctatttctgtccaggtttttttagtgatctcaactcctctgttctgcagGAAGCCCACAAAATGGTGCAGGAAGCAAACATGAAACAGGCAACATCAGAAAAGCAGTTGAAGGAACGCTTGGGGCAAGgtaatggctagtgccatgcaccttacactgtgcgcctatgcagccctgtt Alignment from Exonerate_protein2genome GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAG-GCTTGGGGCAAG cctatttctgtccaggtttttttagtgatctcaactcctctgttctgcagGAAGCCCACAAAATGGTGCAGGAAGCAAACATGAAACAGGCAACATCAGAAAAGCAGTTGAAGGAACGCTTGGGGCAAGgtaatggctagtgccatgcaccttacactgtgcgcctatgcagccctgtt Alignment from Exonerate_coding2genome GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAG-GCTTGGGGCAAG cctatttctgtccaggtttttttagtgatctcaactcctctgttctgcagGAAGCCCACAAAATGGTGCAGGAAGCAAACATGAAACAGGCAACATCAGAAAAGCAGTTGAAGGAACGCTTGGGGCAAGgtaatggctagtgccatgcaccttacactgtgcgcctatgcagccctgtt Alignment from GeneWise GAAGCTCACAAGATGGTTCGGGAAGCCAACATGAAGCAGGCGACATCGGAAAAGCAGTTGAAGGAG-GCTTGGGGCAAG cctatttctgtccaggtttttttagtgatctcaactcctctgttctgcagGAAGCCCACAAAATGGTGCAGGAAGCAAACATGAAACAGGCAACATCAGAAAAGCAGTTGAAGGAACGCTTGGGGCAAGgtaatggctagtgccatgcaccttacactgtgcgcctatgcagccctgtt #### Rasgrp2_ID1703_2 --> 2 - 2 Original Alignment atGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCT-TCCTCTCAGCTGGCTTCGAAACTGCTCCACtt ctatgtccccagaccaaagctccaagactctgtaactgtttttcctccagatGATTCTGGAAAGGTGCAAGATTCCCAGCTAGTACGTATGTTCCTCATGATGTATCCATGGTACATACCTCTCCACTCAGTTGGCTTCAAAACTGCTCCACttgtacgtttggtggtccataacattagaaaatgttgagtgtctggtgccga Alignment from CESAR atGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCT-TCCTCTCAGCTGGCTTCGAAACTGCTCCACtt ctatgtccccagaccaaagctccaagactctgtaactgtttttcctccagatGATTCTGGAAAGGTGCAAGATTCCCAGCTAGTACGTATGTTCCTCATGATGTATCCATGGTACATACCTCTCCACTCAGTTGGCTTCAAAACTGCTCCACttgtacgtttggtggtccataacattagaaaatgttgagtgtctggtgccga Alignment from Spaln_aa2Genome ATGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCT-TCCTCTCAGCTGGCTTCGAAACTGCTCCACTT ctatgtccccagaccaaagctccaagactctgtaactgtttttcctccagATGATTCTGGAAAGGTGCAAGATTCCCAGCTAGTACGTATGTTCCTCATGATGTATCCATGGTACATACCTcTCCACTCAGTTGGCTTCAAAACTGCTCCACTTgtacgtttggtggtccataacattagaaaatgttgagtgtctggtgccga Alignment from Spaln_nt2Genome ATGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCT-TCCTCTCAGCTGGCTTCGAAACTGCTCCACTT ctatgtccccagaccaaagctccaagactctgtaactgtttttcctccagATGATTCTGGAAAGGTGCAAGATTCCCAGCTAGTACGTATGTTCCTCATGATGTATCCATGGTACATACCTCTCCACTCAGTTGGCTTCAAAACTGCTCCACTTgtacgtttggtggtccataacattagaaaatgttgagtgtctggtgccga Alignment from Pairagon ATGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCT-TCCTCTCAGCTGGCTTCGAAACTGCTCCACTT ctatgtccccagaccaaagctccaagactctgtaactgtttttcctccagATGATTCTGGAAAGGTGCAAGATTCCCAGCTAGTACGTATGTTCCTCATGATGTATCCATGGTACATACCTCTCCACTCAGTTGGCTTCAAAACTGCTCCACTTgtacgtttggtggtccataacattagaaaatgttgagtgtctggtgccga Alignment from Exonerate_protein2genome ATGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCT-TCCTCTCAGCTGGCTTCGAAACTGCTCCACTT ctatgtccccagaccaaagctccaagactctgtaactgtttttcctccagATGATTCTGGAAAGGTGCAAGATTCCCAGCTAGTACGTATGTTCCTCATGATGTATCCATGGTACATACCTCTCCACTCAGTTGGCTTCAAAACTGCTCCACTTgtacgtttggtggtccataacattagaaaatgttgagtgtctggtgccga Alignment from Exonerate_coding2genome ATGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCT-TCCTCTCAGCTGGCTTCGAAACTGCTCCACTT ctatgtccccagaccaaagctccaagactctgtaactgtttttcctccagATGATTCTGGAAAGGTGCAAGATTCCCAGCTAGTACGTATGTTCCTCATGATGTATCCATGGTACATACCTCTCCACTCAGTTGGCTTCAAAACTGCTCCACTTgtacgtttggtggtccataacattagaaaatgttgagtgtctggtgccga Alignment from GeneWise ATGACTCCGGAAAGGTGCGAGATCCACAGCTAGTGCGCATGTTTCTCATGATGCACCCCTGGTACATACCT-TCCTCTCAGCTGGCTTCGAAACTGCTCCACTT ctatgtccccagaccaaagctccaagactctgtaactgtttttcctccagATGATTCTGGAAAGGTGCAAGATTCCCAGCTAGTACGTATGTTCCTCATGATGTATCCATGGTACATACCTCTCCACTCAGTTGGCTTCAAAACTGCTCCACTTgtacgtttggtggtccataacattagaaaatgttgagtgtctggtgccga #### Rasgrp2_ID1704_3 --> 1 - 2 Original Alignment cTATCAGCAATCCCGGAAGGACAACTCCAAT-TCTCTACAGATGAAAACGTGTCACTTGGTCag agctgcaataaataaagaatgcccatctggacccctttcctttcccgcagcTATCAGCAATCCCGGAAGGATAACTCTAATCTCCCTACAGATGAAAACATGTCACTTGGTCaggtgagactggtcttgaaagttaatctgagatggattaaaggcttaaatgt Alignment from CESAR cTATCAGCAATCCCGGAAGGACAACTCCAAT-TCTCTACAGATGAAAACGTGTCACTTGGTCag agctgcaataaataaagaatgcccatctggacccctttcctttcccgcagcTATCAGCAATCCCGGAAGGATAACTCTAATCTCCCTACAGATGAAAACATGTCACTTGGTCaggtgagactggtcttgaaagttaatctgagatggattaaaggcttaaatgt Alignment from Spaln_aa2Genome CTATCAGCAATCCCGGAAGGACAACTCCAAT-TCTCTACAGATGAAAACGTGTCACTTGGTCAG agctgcaataaataaagaatgcccatctggacccctttcctttcccgcagCTATCAGCAATCCCGGAAGGATAACTCTAATcTCCCTACAGATGAAAACATGTCACTTGGTCAGgtgagactggtcttgaaagttaatctgagatggattaaaggcttaaatgt Alignment from Spaln_nt2Genome CTATCAGCAATCCCGGAAGGACAACTCCAAT-TCTCTACAGATGAAAACGTGTCACTTGGTCAG agctgcaataaataaagaatgcccatctggacccctttcctttcccgcagCTATCAGCAATCCCGGAAGGATAACTCTAATCTCCCTACAGATGAAAACATGTCACTTGGTCAGgtgagactggtcttgaaagttaatctgagatggattaaaggcttaaatgt Alignment from Pairagon CTATCAGCAATCCCGGAAGGACAACTCCAAT-TCTCTACAGATGAAAACGTGTCACTTGGTCAG agctgcaataaataaagaatgcccatctggacccctttcctttcccgcagCTATCAGCAATCCCGGAAGGATAACTCTAATCTCCCTACAGATGAAAACATGTCACTTGGTCAGgtgagactggtcttgaaagttaatctgagatggattaaaggcttaaatgt Alignment from Exonerate_protein2genome CTATCAGCAATCCCGGAAGGACAACTCCAAT-TCTCTACAGATGAAAACGTGTCACTTGGTCAG agctgcaataaataaagaatgcccatctggacccctttcctttcccgcagCTATCAGCAATCCCGGAAGGATAACTCTAATCTCCCTACAGATGAAAACATGTCACTTGGTCAGgtgagactggtcttgaaagttaatctgagatggattaaaggcttaaatgt Alignment from Exonerate_coding2genome CTATCAGCAATCCCGGAAGGACAACTCCAAT-TCTCTACAGATGAAAACGTGTCACTTGGTCAG agctgcaataaataaagaatgcccatctggacccctttcctttcccgcagCTATCAGCAATCCCGGAAGGATAACTCTAATCTCCCTACAGATGAAAACATGTCACTTGGTCAGgtgagactggtcttgaaagttaatctgagatggattaaaggcttaaatgt Alignment from GeneWise CTATCAGCAATCCCGGAAGGACAACTCCAAT-TCTCTACAGATGAAAACGTGTCACTTGGTCAG agctgcaataaataaagaatgcccatctggacccctttcctttcccgcagCTATCAGCAATCCCGGAAGGATAACTCTAATCTCCCTACAGATGAAAACATGTCACTTGGTCAGgtgagactggtcttgaaagttaatctgagatggattaaaggcttaaatgt #### Rasgrp2_ID1707_6 --> 0 - 0 Original Alignment TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCT-CAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agtgagatccactgtcaacagtttcatgttttcttatattttgaaaacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCAGTCCTGGAGCGATTTATCTCTCTATTCAACAGCGTGCCTCCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTACCCACTTTGTACATGTAGCAGAGgtgaggacctttctgttgtattgagaccagattctatgtggaatgtatgg Alignment from CESAR TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCT-CAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agtgagatccactgtcaacagtttcatgttttcttatattttgaaaacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCAGTCCTGGAGCGATTTATCTCTCTATTCAACAGCGTGCCTCCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTACCCACTTTGTACATGTAGCAGAGgtgaggacctttctgttgtattgagaccagattctatgtggaatgtatgg Alignment from Spaln_aa2Genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCT-CAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agtgagatccactgtcaacagtttcatgttttcttatattttgaaaacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCAGTCCTGGAGCGATTTATCTCTCTATTCAACAGCGTGCCTcCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTACCCACTTTGTACATGTAGCAGAGgtgaggacctttctgttgtattgagaccagattctatgtggaatgtatgg Alignment from Spaln_nt2Genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCTC-AGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agtgagatccactgtcaacagtttcatgttttcttatattttgaaaacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCAGTCCTGGAGCGATTTATCTCTCTATTCAACAGCGTGCCTCCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTACCCACTTTGTACATGTAGCAGAGgtgaggacctttctgttgtattgagaccagattctatgtggaatgtatgg Alignment from Pairagon TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCT-CAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agtgagatccactgtcaacagtttcatgttttcttatattttgaaaacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCAGTCCTGGAGCGATTTATCTCTCTATTCAACAGCGTGCCTCCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTACCCACTTTGTACATGTAGCAGAGgtgaggacctttctgttgtattgagaccagattctatgtggaatgtatgg Alignment from Exonerate_protein2genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCT-CAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agtgagatccactgtcaacagtttcatgttttcttatattttgaaaacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCAGTCCTGGAGCGATTTATCTCTCTATTCAACAGCGTGCCTCCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTACCCACTTTGTACATGTAGCAGAGgtgaggacctttctgttgtattgagaccagattctatgtggaatgtatgg Alignment from Exonerate_coding2genome TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTCTCT-CAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agtgagatccactgtcaacagtttcatgttttcttatattttgaaaacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCAGTCCTGGAGCGATTTATCTCTCTATTCAACAGCGTGCCTCCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTACCCACTTTGTACATGTAGCAGAGgtgaggacctttctgttgtattgagaccagattctatgtggaatgtatgg Alignment from GeneWise TTCCAAGACTACCACAGCTTTGTGACTCATGGCTGCACCGTAGACAACCCGGTCCTGGAGCGATTCATCTCCCTCTTCAACAGTGTC-TCTCAGTGGGTCCAACTCATGATCCTCAGCAAGCCCACAGCCACGCAGCGGGCGCTGGTCATCACGCACTTCGTGCATGTGGCAGAG agtgagatccactgtcaacagtttcatgttttcttatattttgaaaacagTTTCATGACTATCACAGTTTTGTCACGCATGGATGCACTGTAGACAATCCAGTCCTGGAGCGATTTATCTCTCTATTCAACAGCGTGCCTCCAGTGGGTCCAGATAATGATCCTCAGCAAGCCAACGGCCACACAGCAGGCACTGGTCATTACCCACTTTGTACATGTAGCAGAGgtgaggacctttctgttgtattgagaccagattctatgtggaatgtatgg #### Rce1_ID575_7 --> 2 - 1 Original Alignment cgTTCCAGTTCTCCTACACCGCTGTCTTC-GGTGCTTATACAGCTTTCCTCTTCATCCGCACAg tgagggtgtggtgggtgggatcttgtgctggattcctgccttgcccttagcaTTTCAATTCTCGTACACCGCCATATTTCGGTGCTTATACAGCCTTCCTCTTCATCCGCACAggtgtgttcccaccccgtcatgaacaaaagcaaaaggttgagatcaccatc Alignment from CESAR cgTTCCAGTTCTCCTACACCGCTGTC-TTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAg tgagggtgtggtgggtgggatcttgtgctggattcctgccttgcccttagcaTTTCAATTCTCGTACACCGCCATATTTCGGTGCTTATACAGCCTTCCTCTTCATCCGCACAggtgtgttcccaccccgtcatgaacaaaagcaaaaggttgagatcaccatc Alignment from Spaln_aa2Genome CGTTCCAGTTCTCCTACACCGCTGTC-TTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG tgagggtgtggtgggtgggatcttgtgctggattcctgccttgcccttagCATTTCAATTCTCGTACACCGCCATAtTTCGGTGCTTATACAGCCTTCCTCTTCATCCGCACAGgtgtgttcccaccccgtcatgaacaaaagcaaaaggttgagatcaccatc Alignment from Spaln_nt2Genome CGTTCCAGTTCTCCTACACCGCTGTCTT-CGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG tgagggtgtggtgggtgggatcttgtgctggattcctgccttgcccttagCATTTCAATTCTCGTACACCGCCATATTTCGGTGCTTATACAGCCTTCCTCTTCATCCGCACAGgtgtgttcccaccccgtcatgaacaaaagcaaaaggttgagatcaccatc Alignment from Pairagon CGTTCCAGTTCTCCTACACCGCTGT-CTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG tgagggtgtggtgggtgggatcttgtgctggattcctgccttgcccttagCATTTCAATTCTCGTACACCGCCATATTTCGGTGCTTATACAGCCTTCCTCTTCATCCGCACAGgtgtgttcccaccccgtcatgaacaaaagcaaaaggttgagatcaccatc Alignment from Exonerate_protein2genome CGTTCCAGTTCTCCTACACCGCTGTC-TTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG tgagggtgtggtgggtgggatcttgtgctggattcctgccttgcccttagCATTTCAATTCTCGTACACCGCCATATTTCGGTGCTTATACAGCCTTCCTCTTCATCCGCACAGgtgtgttcccaccccgtcatgaacaaaagcaaaaggttgagatcaccatc Alignment from Exonerate_coding2genome CGTTCCAGTTCTCCTACACCGCTGTC-TTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG tgagggtgtggtgggtgggatcttgtgctggattcctgccttgcccttagCATTTCAATTCTCGTACACCGCCATATTTCGGTGCTTATACAGCCTTCCTCTTCATCCGCACAGgtgtgttcccaccccgtcatgaacaaaagcaaaaggttgagatcaccatc Alignment from GeneWise CGTTCCAGTTCTCCTACACCGCT-GTCTTCGGTGCTTATACAGCTTTCCTCTTCATCCGCACAG tgagggtgtggtgggtgggatcttgtgctggattcctgccttgcccttagCATTTCAATTCTCGTACACCGCCATATTTCGGTGCTTATACAGCCTTCCTCTTCATCCGCACAGgtgtgttcccaccccgtcatgaacaaaagcaaaaggttgagatcaccatc #### Rce1_ID576_6 --> 2 - 1 Original Alignment CCCACTCTTTTTTGGAGTCg ccCATTTTCACCACATTATT-GAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAg CCCACTTTTTTTTGGGGTTggttagtcttcttgctttcatttttcaacagccCATTTTCAGCACATTATACGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGAGCATCTTTGTGTCTACAggtaggcgggaaatgtactgagttgactaaggggacaaagggttggatctg Alignment from CESAR CCCACTCTTTTTTGGAGTCg ccCATTTTCACCACATTATT-GAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAg CCCACTTTTTTTTGGGGTTggtaagccttcttgctttcatttttcaacagccCATTTTCAGCACATTATACGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGAGCATCTTTGTGTCTACAggtaggcgggaaatgtactgagttgactaaggggacaaagggttggatctg Alignment from Spaln_aa2Genome CCCACTCTTTTTTGGA GTCGCCCATTTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CCCACTTTTTTTTGGGgttggttagtcttcttgctttcatttttcaacagCCCATT---TTCAGCACATTATACGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGAGCATCTTTGTGTCTACAGgtaggcgggaaatgtactgagttgactaaggggacaaagggttggatctg Alignment from Spaln_nt2Genome CTCTTTTTTGGAGTCG CCCATTTTCACCACATTATT-GAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CTTTTTTTTGG----GgttggttagtcttcttgctttcatttttcaacagCCCATTTTCAGCACATTATACGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGAGCATCTTTGTGTCTACAGgtaggcgggaaatgtactgagttgactaaggggacaaagggttggatctg Alignment from Pairagon CCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTAT-TGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CCCACTTTTTTTTGGGGTTGgttagtcttcttgctttcatttttcaacagCCCATTTTCAGCACATTATACGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGAGCATCTTTGTGTCTACAGgtaggcgggaaatgtactgagttgactaaggggacaaagggttggatctg Alignment from Exonerate_protein2genome CCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATT-GAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CCCACTTTTTTTTGGGGTTGgttagtcttcttgctttcatttttcaacagCCCATTTTCAGCACATTATACGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGAGCATCTTTGTGTCTACAGgtaggcgggaaatgtactgagttgactaaggggacaaagggttggatctg Alignment from Exonerate_coding2genome CCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATT-GAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CCCACTTTTTTTTGGGGTTGgttagtcttcttgctttcatttttcaacagCCCATTTTCAGCACATTATACGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGAGCATCTTTGTGTCTACAGgtaggcgggaaatgtactgagttgactaaggggacaaagggttggatctg Alignment from GeneWise CCCACTCTTTTTTGGAGTCGCC-CAT------------------------------TTTCACCACATTATTGAGCAGCTGCGCTTCCGCCAGAGCAGTGTGGGAAGTATCTTCGTGTCTGCAG CCCACTTTTTTTTGGGGTTGGTTAGTCTTCTTGCTTTCATTTTTCAACAGCCCATTTTCAGCACATTATACGAGCAGTTACGCTTCCGCCAGAGCAGTGTGGGGAGCATCTTTGTGTCTACAGgtaggcgggaaatgtactgagttgactaaggggacaaagggttggatctg #### Rce1_ID577_5 --> 2 - 1 Original Alignment ccCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGC-ATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCg ccCATTTTCACCACATTATT cgaatagatatggaagtcagggctagcttttcaccctgtttatatctcagccCCTTGTTCATGGGCTCAATGCCTCACTGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCATTGACAGGGGAGTTGGTGTTCCGGGCATGCCATGTTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCCGTGTTCACATGCCCACTTTTTTTTGGGGTTggtaagtctttttcttattccttatatttagccCATTTTCAGCACATTATA Alignment from CESAR ccCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGC-ATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCg ccCATTTTCACCACATTATT cgaatagatatggaagtcagggctagcttttcaccctgtttatatctcagccCCTTGTTCATGGGCTCAATGCCTCACTGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCATTGACAGGGGAGTTGGTGTTCCGGGCATGCCATGTTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCCGTGTTCACATGCCCACTTTTTTTTGGGGTTggtaagccttcttgctttcatttttcaacagccCATTTTCAGCACATTATA Alignment from Spaln_aa2Genome CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGC-ATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTC------------------------------GCCCATTTTCACCACATTATT cgaatagatatggaagtcagggctagcttttcaccctgtttatatctcagCCCCTTGTTCATGGGCTCAATGCCTCACTGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCATTGACAGGGGAGTTGGTGTTCCGGGCATGCcATGTTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCCGTGTTCACATGCCCACTTTTTTTTGGGGTTGGTAAGTCTTTTTCTTATTCCTTATATTTAGCCCATTTTCAGCACATTATA Alignment from Spaln_nt2Genome CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTG-CATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATT cgaatagatatggaagtcagggctagcttttcaccctgtttatatctcagCCCCTTGTTCATGGGCTCAATGCCTCACTGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCATTGACAGGGGAGTTGGTGTTCCGGGCATGCCATGTTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCCGTGTTCACATGCCCACTTTTTTTTGG----GgttggtaagtctttttcttattccttatatttagCCCATTTTCAGCACATTATA Alignment from Pairagon CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTG-CATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATT cgaatagatatggaagtcagggctagcttttcaccctgtttatatctcagCCCCTTGTTCATGGGCTCAATGCCTCACTGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCATTGACAGGGGAGTTGGTGTTCCGGGCATGCCATGTTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCCGTGTTCACATGCCCACTTTTTTTTGGGGTTGgtaagtctttttcttattccttatatttagCCCATTTTCAGCACATTATA Alignment from Exonerate_protein2genome CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGC-ATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATT cgaatagatatggaagtcagggctagcttttcaccctgtttatatctcagCCCCTTGTTCATGGGCTCAATGCCTCACTGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCATTGACAGGGGAGTTGGTGTTCCGGGCATGCCATGTTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCCGTGTTCACATGCCCACTTTTTTTTGGGGTTGgtaagtctttttcttattccttatatttagCCCATTTTCAGCACATTATA Alignment from Exonerate_coding2genome CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGC-ATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTCG CCCATTTTCACCACATTATT cgaatagatatggaagtcagggctagcttttcaccctgtttatatctcagCCCCTTGTTCATGGGCTCAATGCCTCACTGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCATTGACAGGGGAGTTGGTGTTCCGGGCATGCCATGTTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCCGTGTTCACATGCCCACTTTTTTTTGGGGTTGgtaagtctttttcttattccttatatttagCCCATTTTCAGCACATTATA Alignment from GeneWise CCCCTCGTTCTTGGGCCCGCTGCCTCACAGACATGCGCTGGCTACGAAACCAAGTTATTGCACCGCTGACAGAGGAGCTGGTGTTCCGGGCTTGC-ATGCTGCCCATGCTAGCGCCGTGCACGGGTCTGGGCCCTGCTGTGTTCACCTGCCCACTCTTTTTTGGAGTC------------------------------GCCCATTTTCACCACATTATT cgaatagatatggaagtcagggctagcttttcaccctgtttatatctcagCCCCTTGTTCATGGGCTCAATGCCTCACTGACATGCGCTGGCTAAGAAACAAAGTTATTGCACCATTGACAGGGGAGTTGGTGTTCCGGGCATGCCATGTTGCCCATGCTAGCACCATGTACAGGTCTCAGTCCAGCCGTGTTCACATGCCCACTTTTTTTTGGGGTTGGTAAGTCTTTTTCTTATTCCTTATATTTAGCCCATTTTCAGCACATTATA #### Rce1_ID580_2 --> 1 - 0 Original Alignment gGACCACCCCGCTGTTATCAAGCGGCGTTCCACC-AGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG ctttaatcacaagtacctcccagatctgtttttttccctgtaattttaaggGACCACCCCTCTGTAATAAAGCGGCATTTTACCCGGTGTTCTAATTGTATCTAGCTTATCCCCTCTTTGTGTGCTGCTCTGGAGGGAACTCACTGGTATCCAGgtgagtagaagaggatgatgtcctaggcagcataccaaggaatcttttgc Alignment from CESAR gGACCACCCCGCTGTTATCAAGCGGCGTTCCACC-AGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG ctttaatcacaagtacctcccagatctgtttttttccctgtaattttaaggGACCACCCCTCTGTAATAAAGCGGCATTTTACCCGGTGTTCTAATTGTATCTAGCTTATCCCCTCTTTGTGTGCTGCTCTGGAGGGAACTCACTGGTATCCAGgtgagtagaagaggatgatgtcctaggcagcataccaaggaatcttttgc Alignment from Spaln_aa2Genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACC-AGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG ctttaatcacaagtacctcccagatctgtttttttccctgtaattttaagGGACCACCCCTCTGTAATAAAGCGGCATTTTACCcGGTGTTCTAATTGTATCTAGCTTATCCCCTCTTTGTGTGCTGCTCTGGAGGGAACTCACTGGTATCCAGgtgagtagaagaggatgatgtcctaggcagcataccaaggaatcttttgc Alignment from Spaln_nt2Genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACCAG-TGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG ctttaatcacaagtacctcccagatctgtttttttccctgtaattttaagGGACCACCCCTCTGTAATAAAGCGGCATTTTACCCGGTGTTCTAATTGTATCTAGCTTATCCCCTCTTTGTGTGCTGCTCTGGAGGGAACTCACTGGTATCCAGgtgagtagaagaggatgatgtcctaggcagcataccaaggaatcttttgc Alignment from Pairagon GGACCACCCCGCTGTTATCAAGCGGCGTTCCA-CCAGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG ctttaatcacaagtacctcccagatctgtttttttccctgtaattttaagGGACCACCCCTCTGTAATAAAGCGGCATTTTACCCGGTGTTCTAATTGTATCTAGCTTATCCCCTCTTTGTGTGCTGCTCTGGAGGGAACTCACTGGTATCCAGgtgagtagaagaggatgatgtcctaggcagcataccaaggaatcttttgc Alignment from Exonerate_protein2genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACC-AGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG ctttaatcacaagtacctcccagatctgtttttttccctgtaattttaagGGACCACCCCTCTGTAATAAAGCGGCATTTTACCCGGTGTTCTAATTGTATCTAGCTTATCCCCTCTTTGTGTGCTGCTCTGGAGGGAACTCACTGGTATCCAGgtgagtagaagaggatgatgtcctaggcagcataccaaggaatcttttgc Alignment from Exonerate_coding2genome GGACCACCCCGCTGTTATCAAGCGGCGTTCCACC-AGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG ctttaatcacaagtacctcccagatctgtttttttccctgtaattttaagGGACCACCCCTCTGTAATAAAGCGGCATTTTACCCGGTGTTCTAATTGTATCTAGCTTATCCCCTCTTTGTGTGCTGCTCTGGAGGGAACTCACTGGTATCCAGgtgagtagaagaggatgatgtcctaggcagcataccaaggaatcttttgc Alignment from GeneWise GGACCACCCCGCTGTTATCAAGCGGCGTTCCACC-AGTGTCCTGGTAGTGTCCAGCTTGTCCCCTCTTTGCGTGCTGCTCTGGAGGGAACTCACTGGCATCCAG ctttaatcacaagtacctcccagatctgtttttttccctgtaattttaagGGACCACCCCTCTGTAATAAAGCGGCATTTTACCCGGTGTTCTAATTGTATCTAGCTTATCCCCTCTTTGTGTGCTGCTCTGGAGGGAACTCACTGGTATCCAGgtgagtagaagaggatgatgtcctaggcagcataccaaggaatcttttgc #### Rcor2_ID2094_5 --> 0 - 2 Original Alignment CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAG-GCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACag acttgaggggtgagtcttatttggcctctgtggtccttttctcctcccagCTTCCTGATAAGATCATTCCCAGCCTGGTGAAATATTACTACTCTTGGAAGAAGACACGTAGTCAAACTAGTGTGATGGATAGGCAGCGCCAGGCGGTTGAGTGGCCGCAAGGACAAAGAAGATaggtaaaaagtgtagtttctgacttagggaaatggatggggggcgaaaagta Alignment from CESAR CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAG-GCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACag acttgaggggtgagtcttatttggcctctgtggtccttttctcctcccagCTTCCTGATAAGATCATTCCCAGCCTGGTGAAATATTACTACTCTTGGAAGAAGACACGTAGTCAAACTAGTGTGATGGATAGGCAGCGCCAGGCGGTTGAGTGGCCGCAAGGACAAAGAAGATaggtaaaaagtgtagtttctgacttagggaaatggatggggggcgaaaagta Alignment from Spaln_aa2Genome CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAG-GCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG acttgaggggtgagtcttatttggcctctgtggtccttttctcctcccagCTTCCTGATAAGATCATTCCCAGCCTGGTGAAATATTACTACTCTTGGAAGAAGACACGTAGTCAAACTAGTGTGATGGATAGGCAGcGCCAGGCGGTTGAGTGGCCGCAAGGACAAAGAAGATAGgtaaaaagtgtagtttctgacttagggaaatggatggggggcgaaaagta Alignment from Spaln_nt2Genome CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAG-GCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG acttgaggggtgagtcttatttggcctctgtggtccttttctcctcccagCTTCCTGATAAGATCATTCCCAGCCTGGTGAAATATTACTACTCTTGGAAGAAGACACGTAGTCAAACTAGTGTGATGGATAGGCAGCGCCAGGCGGTTGAGTGGCCGCAAGGACAAAGAAGATAGgtaaaaagtgtagtttctgacttagggaaatggatggggggcgaaaagta Alignment from Pairagon CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAG-GCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG acttgaggggtgagtcttatttggcctctgtggtccttttctcctcccagCTTCCTGATAAGATCATTCCCAGCCTGGTGAAATATTACTACTCTTGGAAGAAGACACGTAGTCAAACTAGTGTGATGGATAGGCAGCGCCAGGCGGTTGAGTGGCCGCAAGGACAAAGAAGATAGgtaaaaagtgtagtttctgacttagggaaatggatggggggcgaaaagta Alignment from Exonerate_protein2genome CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAG-GCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG acttgaggggtgagtcttatttggcctctgtggtccttttctcctcccagCTTCCTGATAAGATCATTCCCAGCCTGGTGAAATATTACTACTCTTGGAAGAAGACACGTAGTCAAACTAGTGTGATGGATAGGCAGCGCCAGGCGGTTGAGTGGCCGCAAGGACAAAGAAGATAGgtaaaaagtgtagtttctgacttagggaaatggatggggggcgaaaagta Alignment from Exonerate_coding2genome CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAG-GCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG acttgaggggtgagtcttatttggcctctgtggtccttttctcctcccagCTTCCTGATAAGATCATTCCCAGCCTGGTGAAATATTACTACTCTTGGAAGAAGACACGTAGTCAAACTAGTGTGATGGATAGGCAGCGCCAGGCGGTTGAGTGGCCGCAAGGACAAAGAAGATAGgtaaaaagtgtagtttctgacttagggaaatggatggggggcgaaaagta Alignment from GeneWise CTCCCTGACAAGGTGATTCCCAGCCTGGTGAAGTATTACTACTCTTGGAAGAAGACCCGAAGTCGAACTAGTGTGATGGACAGGCAG-GCCAGGCGGCTGGGTGGCCGCAAGGACAAAGAAGACAG acttgaggggtgagtcttatttggcctctgtggtccttttctcctcccagCTTCCTGATAAGATCATTCCCAGCCTGGTGAAATATTACTACTCTTGGAAGAAGACACGTAGTCAAACTAGTGTGATGGATAGGCAGCGCCAGGCGGTTGAGTGGCCGCAAGGACAAAGAAGATAGgtaaaaagtgtagtttctgacttagggaaatggatggggggcgaaaagta #### Rcor2_ID2098_9 --> 0 - 1 Original Alignment GCTAATACCAAGTTCAACTCCCGCTGGACC-ACTGATGAGCAACTTCTAGCTGTTCAAg cttcccccattttttgctttcattgatggctccacatcttgtccttgcagGCTAATACCAAGTTCAACTCCCGCTGGACCCACTGATGAGGAACTTCTAGCAGTTCAAggtaagtgacgctatcgtgagactccaaaaatctggggatgtttgggaccc Alignment from CESAR GCTAATACCAAGTTCAACTCCCGCTGGACC-ACTGATGAGCAACTTCTAGCTGTTCAAg cttcccccattttttgctttcattgatggctccacatcttgtccttgcagGCTAATACCAAGTTCAACTCCCGCTGGACCCACTGATGAGGAACTTCTAGCAGTTCAAggtaagtgacgctatcgtgagactccaaaaatctggggatgtttgggaccc Alignment from Spaln_aa2Genome GCTAATACCAAGTTCAACTCCCGCTGGACC-ACTGATGAGCAACTTCTAGCTGTTCAAG cttcccccattttttgctttcattgatggctccacatcttgtccttgcagGCTAATACCAAGTTCAACTCCCGCTGGACCcACTGATGAGGAACTTCTAGCAGTTCAAGgtaagtgacgctatcgtgagactccaaaaatctggggatgtttgggaccc Alignment from Spaln_nt2Genome GCTAATACCAAGTTCAACTCCCGCTGGAC-CACTGATGAGCAACTTCTAGCTGTTCAAG cttcccccattttttgctttcattgatggctccacatcttgtccttgcagGCTAATACCAAGTTCAACTCCCGCTGGACCCACTGATGAGGAACTTCTAGCAGTTCAAGgtaagtgacgctatcgtgagactccaaaaatctggggatgtttgggaccc Alignment from Pairagon GCTAATACCAAGTTCAACTCCCGCTGGA-CCACTGATGAGCAACTTCTAGCTGTTCAAG cttcccccattttttgctttcattgatggctccacatcttgtccttgcagGCTAATACCAAGTTCAACTCCCGCTGGACCCACTGATGAGGAACTTCTAGCAGTTCAAGgtaagtgacgctatcgtgagactccaaaaatctggggatgtttgggaccc Alignment from Exonerate_protein2genome GCTAATACCAAGTTCAACTCCCGCTGGACC-ACTGATGAGCAACTTCTAGCTGTTCAAG cttcccccattttttgctttcattgatggctccacatcttgtccttgcagGCTAATACCAAGTTCAACTCCCGCTGGACCCACTGATGAGGAACTTCTAGCAGTTCAAGgtaagtgacgctatcgtgagactccaaaaatctggggatgtttgggaccc Alignment from Exonerate_coding2genome GTCCAGAGCATGAAGCAGACCAATAGCAGCCTCCGCCAAGCACTGGAGGGC cttcccccattttttgctttcattgatggctccacatcttgtccttgcaggctaataccaagttcaactcccgctggacccactgatgaggaacttctagcagttcaaGGTAAGTGACGCTATCGTGAGACTCCAAAAATCTGGGGATGTTTGGGACCC Alignment from GeneWise cttcccccattttttgctttcattgatggctccacatcttgtccttgcaggctaataccaagttcaactcccgctggacccactgatgaggaacttctagcagttcaaggtaagtgacgctatcgtgagactccaaaaatctggggatgtttgggaccc #### Rcor2_ID2099_10 --> 2 - 0 Original Alignment ctATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGCTTC-AACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG accggctgttttaggtctacagtcggacctgatttctctttttcttgaagccATTTGTAGATATGGGACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACGTTCTTTGTGAGCTATCGCCGCCACTTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCCGGCGAGGGGCTCCTGTATCAACCACAGCCCTTGAGGAAGATGATAAGgtgagtggcctctctatgaaacatcctgttgaacagtatgtgccactttc Alignment from CESAR ctATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGC-TTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG accggctgttttaggtctacagtcggacctgatttctctttttcttgaagccATTTGTAGATATGGGACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACGTTCTTTGTGAGCTATCGCCGCCACTTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCCGGCGAGGGGCTCCTGTATCAACCACAGCCCTTGAGGAAGATGATAAGgtgagtggcctctctatgaaacatcctgttgaacagtatgtgttggcttc Alignment from Spaln_aa2Genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGC-TTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG accggctgttttaggtctacagtcggacctgatttctctttttcttgaagCCATTTGTAGATATGGGACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACGTTCTTTGTGAGCTATCGCCGCCACtTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCCGGCGAGGGGCTCCTGTATCAACCACAGCCCTTGAGGAAGATGATAAGgtgagtggcctctctatgaaacatcctgttgaacagtatgtgccactttc Alignment from Spaln_nt2Genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGC-TTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG accggctgttttaggtctacagtcggacctgatttctctttttcttgaagCCATTTGTAGATATGGGACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACGTTCTTTGTGAGCTATCGCCGCCACTTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCCGGCGAGGGGCTCCTGTATCAACCACAGCCCTTGAGGAAGATGATAAGgtgagtggcctctctatgaaacatcctgttgaacagtatgtgccactttc Alignment from Pairagon CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGC-TTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG accggctgttttaggtctacagtcggacctgatttctctttttcttgaagCCATTTGTAGATATGGGACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACGTTCTTTGTGAGCTATCGCCGCCACTTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCCGGCGAGGGGCTCCTGTATCAACCACAGCCCTTGAGGAAGATGATAAGgtgagtggcctctctatgaaacatcctgttgaacagtatgtgccactttc Alignment from Exonerate_protein2genome CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGC-TTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG accggctgttttaggtctacagtcggacctgatttctctttttcttgaagCCATTTGTAGATATGGGACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACGTTCTTTGTGAGCTATCGCCGCCACTTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCCGGCGAGGGGCTCCTGTATCAACCACAGCCCTTGAGGAAGATGATAAGgtgagtggcctctctatgaaacatcctgttgaacagtatgtgccactttc Alignment from Exonerate_coding2genome CAAGTTCAACTCCCGCTGGACCACTGATGAGCAACTTCTAGCTGTTCAAGCTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGCCGC-TTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG ACCGGCTGTTTTAGGTCTACAGTCGGACCTGATTTCTCTTTTTCTTGAAGCCATTTGTAGATATGGGACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACGTTCTTTGTGAGCTATCGCCGCCACTTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCCGGCGAGGGGCTCCTGTATCAACCACAGCCCTTGAGGAAGATGATAAGgtgagtggcctctctatgaaacatcctgttgaacagtatgtgccactttc Alignment from GeneWise CTATTCGTAGATACGGCAAAGACTTTGGGGCTATTGCAGAGGTGATTGGGAACAAGACTCTGACCCAAGTGAAGACCTTCTTTGTGAGCTATCGTCGC-CGCTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAGGCTGAGCAGGATGGGGCCCCCGCAGCTCCGGTCCCCACGGAAGAGGCCAGGCGAGGGGCTCCTGTACCAGCCACAGCCCTAGAAGAAGATGATGAG accggctgttttaggtctacagtcggacctgatttctctttttcttgaagCCATTTGTAGATATGGGACAGACTTTGGGGCTATTGCAGAAGTGATCGGGAACAAGACTCTGACCCAAGTGAAGACGTTCTTTGTGAGCTATCGCCGCCACTTTCAACCTGGAAGAGGTGCTGCAGGAATGGGAAGCTGAGCAAGATGGGGCCCCCACAGCTCCGGTCCCCACGGAAGAGGCCCGGCGAGGGGCTCCTGTATCAACCACAGCCCTTGAGGAAGATGATAAGgtgagtggcctctctatgaaacatcctgttgaacagtatgtgccactttc #### Rela_ID1126_3 --> 2 - 0 Original Alignment agCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATC-ATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG ccggaggctaaggcacactgtatcacctttttccctcttcacaccctcagaaCCAGCCCAGGCATCTGGCCCTTATGTGGACATCCATCAAACAACCAAAGCAACAAGGC---CGTTTCCGCTATAAATCTGAGGGGCGCTCTGAAGGTGGTATCCCTGGTGAGAGAAGCACGGATACCAAAAAGACACATCCCACTATAAAGgtatgtaacaaggtccttgcatggctaacaagcaaacaggtgtcagtgtc Alignment from CESAR agCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATC-ATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG ccggaggctaaggcacactgtatcacctttttccctcttcacaccctcagaaCCAGCCCAGGCATCTGGCCCTTATGTGGACATCCATCAAACAACCAAAGCAACAAGGC---CGTTTCCGCTATAAATCTGAGGGGCGCTCTGAAGGTGGTATCCCTGGTGAGAGAAGCACGGATACCAAAAAGACACATCCCACTATAAAGgtatgtaacaaggtccttgcatggctaacaagcaaacaggtgtcagtgtc Alignment from Spaln_aa2Genome AGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATC-ATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG ccggaggctaaggcacactgtatcacctttttccctcttcacaccctcagAACCAGCCCAGGCATCTGGCCCTTATGTGGACATCcATCAAACAACCAAAGCAACAAGGC---CGTTTCCGCTATAAATCTGAGGGGCGCTCTGAAGGTGGTATCCCTGGTGAGAGAAGCACGGATACCAAAAAGACACATCCCACTATAAAGgtatgtaacaaggtccttgcatggctaacaagcaaacaggtgtcagtgtc Alignment from Spaln_nt2Genome GACGATCTGTTTCCCCTCATCTTTCCCTCAGAGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATC-ATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG cggaggctaaggcacactgTATCACCT-TTTTCCCTCTTCACACCCTCAGAACCAGCCCAGGCATCTGGCCCTTATGTGGACATCCATCAAACAACCAAAGCAACAAGGC---CGTTTCCGCTATAAATCTGAGGGGCGCTCTGAAGGTGGTATCCCTGGTGAGAGAAGCACGGATACCAAAAAGACACATCCCACTATAAAGgtatgtaacaaggtccttgcatggctaacaagcaaacaggtgtcagtgtc Alignment from Pairagon AGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATC-ATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG ccggaggctaaggcacactgtatcacctttttccctcttcacaccctcagAACCAGCCCAGGCATCTGGCCCTTATGTGGACATCCATCAAACAACCAAAGCAACAAGGC---CGTTTCCGCTATAAATCTGAGGGGCGCTCTGAAGGTGGTATCCCTGGTGAGAGAAGCACGGATACCAAAAAGACACATCCCACTATAAAGgtatgtaacaaggtccttgcatggctaacaagcaaacaggtgtcagtgtc Alignment from Exonerate_protein2genome AGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATC-ATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG ccggaggctaaggcacactgtatcacctttttccctcttcacaccctcagAACCAGCCCAGGCATCTGGCCCTTATGTGGACATCCATCAAACAACCAAAGCAACAAGGC---CGTTTCCGCTATAAATCTGAGGGGCGCTCTGAAGGTGGTATCCCTGGTGAGAGAAGCACGGATACCAAAAAGACACATCCCACTATAAAGgtatgtaacaaggtccttgcatggctaacaagcaaacaggtgtcagtgtc Alignment from Exonerate_coding2genome TTTCCCCTCATCTTTCCCTCAGAGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATC-ATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG ccggaggctaaggcacactgtatcacctTTTTCCCTCTTCACACCCTCAGAACCAGCCCAGGCATCTGGCCCTTATGTGGACATCCATCAAACAACCAAAGCAACAAGGC---CGTTTCCGCTATAAATCTGAGGGGCGCTCTGAAGGTGGTATCCCTGGTGAGAGAAGCACGGATACCAAAAAGACACATCCCACTATAAAGgtatgtaacaaggtccttgcatggctaacaagcaaacaggtgtcagtgtc Alignment from GeneWise GACGATCTGTTTCCCCTCATCTTTCCCTCAGAGCCAGCCCAGGCTTCTGGGCCTTATGTGGAGATC-ATCGAACAGCCGAAGCAACGGGGCATGCGATTCCGCTATAAATGCGAGGGGCGCTCAGCGGGCAGTATTCCTGGCGAGAGAAGCACAGATACCACCAAGACACACCCCACCATCAAG gaggctaaggcacactgta---TCACCTTTTTCCCTCTTCACACCCTCAGAACCAGCCCAGGCATCTGGCCCTTATGTGGACATCCATCAAACAACCAAAGCAACAAGGC---CGTTTCCGCTATAAATCTGAGGGGCGCTCTGAAGGTGGTATCCCTGGTGAGAGAAGCACGGATACCAAAAAGACACATCCCACTATAAAGgtatgtaacaaggtccttgcatggctaacaagcaaacaggtgtcagtgtc #### Rela_ID1130_7 --> 2 - 1 Original Alignment ggGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATC-TTCTTGCTGTGCGACAAGGTGCAGAAAg atggtgggggctaaggcacccatgctatgagcccagtgcgtgctgttcagggGCCCCCAACACTTCTGAGCTTAAAATCTGCAGAGTAAACAGGAACTCTGGGAGCTGTCTCGGAGGGGAAGAGATTCTTCCTTCTGTGTGACAGGGTGCAAAAGggtaatcagtgaactacacataaagagggggggcagaagtggagttcgagg Alignment from CESAR ggGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATC-TTCTTGCTGTGCGACAAGGTGCAGAAAg atggtgggggctaaggcacccatgctatgagcccagtgcgtgctgttcagggGCCCCCAACACTTCTGAGCTTAAAATCTGCAGAGTAAACAGGAACTCTGGGAGCTGTCTCGGAGGGGAAGAGATTCTTCCTTCTGTGTGACAGGGTGCAAAAGggtaatcagtgaactacacataaagagggggggcagaagtggagttcgagg Alignment from Spaln_aa2Genome GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATC-TTCTTGCTGTGCGACAAGGTGCAGAAAG atggtgggggctaaggcacccatgctatgagcccagtgcgtgctgttcagGGGCCCCCAACACTTCTGAGCTTAAAATCTGCAGAGTAAACAGGAACTCTGGGAGCTGTCTCGGAGGGGAAGAGATTcTTCCTTCTGTGTGACAGGGTGCAAAAGGgtaatcagtgaactacacataaagagggggggcagaagtggagttcgagg Alignment from Spaln_nt2Genome GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGA-TCTTCTTGCTGTGCGACAAGGTGCAGAAAG atggtgggggctaaggcacccatgctatgagcccagtgcgtgctgttcagGGGCCCCCAACACTTCTGAGCTTAAAATCTGCAGAGTAAACAGGAACTCTGGGAGCTGTCTCGGAGGGGAAGAGATTCTTCCTTCTGTGTGACAGGGTGCAAAAGGgtaatcagtgaactacacataaagagggggggcagaagtggagttcgagg Alignment from Pairagon GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGA-TCTTCTTGCTGTGCGACAAGGTGCAGAAAG atggtgggggctaaggcacccatgctatgagcccagtgcgtgctgttcagGGGCCCCCAACACTTCTGAGCTTAAAATCTGCAGAGTAAACAGGAACTCTGGGAGCTGTCTCGGAGGGGAAGAGATTCTTCCTTCTGTGTGACAGGGTGCAAAAGGgtaatcagtgaactacacataaagagggggggcagaagtggagttcgagg Alignment from Exonerate_protein2genome GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATC-TTCTTGCTGTGCGACAAGGTGCAGAAAG atggtgggggctaaggcacccatgctatgagcccagtgcgtgctgttcagGGGCCCCCAACACTTCTGAGCTTAAAATCTGCAGAGTAAACAGGAACTCTGGGAGCTGTCTCGGAGGGGAAGAGATTCTTCCTTCTGTGTGACAGGGTGCAAAAGGgtaatcagtgaactacacataaagagggggggcagaagtggagttcgagg Alignment from Exonerate_coding2genome GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAGATC-TTCTTGCTGTGCGACAAGGTGCAGAAAG atggtgggggctaaggcacccatgctatgagcccagtgcgtgctgttcagGGGCCCCCAACACTTCTGAGCTTAAAATCTGCAGAGTAAACAGGAACTCTGGGAGCTGTCTCGGAGGGGAAGAGATTCTTCCTTCTGTGTGACAGGGTGCAAAAGGgtaatcagtgaactacacataaagagggggggcagaagtggagttcgagg Alignment from GeneWise GGGCCCCCAACACTGCCGAGCTCAAGATCTGCCGAGTAAACCGGAACTCTGGGAGCTGCCTCGGTGGGGATGAG-ATCTTCTTGCTGTGCGACAAGGTGCAGAAAG atggtgggggctaaggcacccatgctatgagcccagtgcgtgctgttcagGGGCCCCCAACACTTCTGAGCTTAAAATCTGCAGAGTAAACAGGAACTCTGGGAGCTGTCTCGGAGGGGAAGAGATTCTTCCTTCTGTGTGACAGGGTGCAAAAGGgtaatcagtgaactacacataaagagggggggcagaagtggagttcgagg #### Rin1_ID807_2 --> 1 - 0 Original Alignment gCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAG-GCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG ttttacaacaatgggatacacgggaagcctcttctctctcactcctacaggCCCTCCACAGACCCACTGTATGACACACCTGATACAAGAGGTGTGCAGCGCTGGTGGGTCACAACAGCCAGCATGCAAAGTGAGCCTTCATGAGCGGCTCTTGATCACATGTCCTGTGTGGTTACGGCTCCGGGCCAATGCAGCTGCTGCACTACATGTGCTAAGTACAGAGCCTCCAGGGgtatggcatcttagtctccaattggccaaacctgatcaggacaaaaggta Alignment from CESAR gCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAG-GCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG ttttacaacaatgggatacacgggaagcctcttctctctcactcctacaggCCCTCCACAGACCCACTGTATGACACACCTGATACAAGAGGTGTGCAGCGCTGGTGGGTCACAACAGCCAGCATGCAAAGTGAGCCTTCATGAGCGGCTCTTGATCACATGTCCTGTGTGGTTACGGCTCCGGGCCAATGCAGCTGCTGCACTACATGTGCTAAGTACAGAGCCTCCAGGGgtatggcatcttagtctccaattggccaaacctgatcaggacaaaaggta Alignment from Spaln_aa2Genome GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAG-GCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG ttttacaacaatgggatacacgggaagcctcttctctctcactcctacagGCCCTCCACAGACCCACTGTATGACACACCTGATACAAGAGGTGTGCAGcGCTGGTGGGTCACAACAGCCAGCATGCAAAGTGAGCCTTCATGAGCGGCTCTTGATCACATGTCCTGTGTGGTTACGGCTCCGGGCCAATGCAGCTGCTGCACTACATGTGCTAAGTACAGAGCCTCCAGGGgtatggcatcttagtctccaattggccaaacctgatcaggacaaaaggta Alignment from Spaln_nt2Genome GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAG-GCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG ttttacaacaatgggatacacgggaagcctcttctctctcactcctacagGCCCTCCACAGACCCACTGTATGACACACCTGATACAAGAGGTGTGCAGCGCTGGTGGGTCACAACAGCCAGCATGCAAAGTGAGCCTTCATGAGCGGCTCTTGATCACATGTCCTGTGTGGTTACGGCTCCGGGCCAATGCAGCTGCTGCACTACATGTGCTAAGTACAGAGCCTCCAGGGgtatggcatcttagtctccaattggccaaacctgatcaggacaaaaggta Alignment from Pairagon GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAG-GCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG ttttacaacaatgggatacacgggaagcctcttctctctcactcctacagGCCCTCCACAGACCCACTGTATGACACACCTGATACAAGAGGTGTGCAGCGCTGGTGGGTCACAACAGCCAGCATGCAAAGTGAGCCTTCATGAGCGGCTCTTGATCACATGTCCTGTGTGGTTACGGCTCCGGGCCAATGCAGCTGCTGCACTACATGTGCTAAGTACAGAGCCTCCAGGGgtatggcatcttagtctccaattggccaaacctgatcaggacaaaaggta Alignment from Exonerate_protein2genome GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAG-GCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG ttttacaacaatgggatacacgggaagcctcttctctctcactcctacagGCCCTCCACAGACCCACTGTATGACACACCTGATACAAGAGGTGTGCAGCGCTGGTGGGTCACAACAGCCAGCATGCAAAGTGAGCCTTCATGAGCGGCTCTTGATCACATGTCCTGTGTGGTTACGGCTCCGGGCCAATGCAGCTGCTGCACTACATGTGCTAAGTACAGAGCCTCCAGGGgtatggcatcttagtctccaattggccaaacctgatcaggacaaaaggta Alignment from Exonerate_coding2genome AAGCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAG-GCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG ttttacaacaatgggatacacgggaagcctcttctctctcactcctacAGGCCCTCCACAGACCCACTGTATGACACACCTGATACAAGAGGTGTGCAGCGCTGGTGGGTCACAACAGCCAGCATGCAAAGTGAGCCTTCATGAGCGGCTCTTGATCACATGTCCTGTGTGGTTACGGCTCCGGGCCAATGCAGCTGCTGCACTACATGTGCTAAGTACAGAGCCTCCAGGGgtatggcatcttagtctccaattggccaaacctgatcaggacaaaaggta Alignment from GeneWise GCCATCTACAGACCCACTGTATGACACACCTGATACCAGAGGGGTACAG-GCAGGCGGGTCCCAACAGCCAGCACGTACTGTGAGCCTTCGGGAGCGGCTGCTGATCACCCGGCCTGTGTGGTTACAGCTGCGGGCCAACGCTGCAGCCGCGCTGCACGTGCTGAGGACAGAGCCTCCGGGG ttttacaacaatgggatacacgggaagcctcttctctctcactcctacagGCCCTCCACAGACCCACTGTATGACACACCTGATACAAGAGGTGTGCAGCGCTGGTGGGTCACAACAGCCAGCATGCAAAGTGAGCCTTCATGAGCGGCTCTTGATCACATGTCCTGTGTGGTTACGGCTCCGGGCCAATGCAGCTGCTGCACTACATGTGCTAAGTACAGAGCCTCCAGGGgtatggcatcttagtctccaattggccaaacctgatcaggacaaaaggta #### Rin1_ID808_3 --> 0 - 1 Original Alignment ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTC-TCCAGCCACTATATCGAAGAGAGTACTGGCg ctagatgagatgcacatagagacccaaactcctgtgtgtttgcttaccagACATTTGTCGTATGCAAATACAACACCCGCCAGTGCCAGGCTCTGTGTGTACGGTTGCCAGAACCTAGTGGCCCATCTTTTGTCCTCCAGCCACTATATTGAAGAAAGTACTGGTggtaagtagggtactaaggggtccgggcacattgacaagtacatgaatggg Alignment from CESAR ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTC-TCCAGCCACTATATCGAAGAGAGTACTGGCg ctagatgagatgcacatagagacccaaactcctgtgtgtttgcttaccagACATTTGTCGTATGCAAATACAACACCCGCCAGTGCCAGGCTCTGTGTGTACGGTTGCCAGAACCTAGTGGCCCATCTTTTGTCCTCCAGCCACTATATTGAAGAAAGTACTGGTggtaagtagggtactaaggggtccgggcacattgacaagtacatgaatggg Alignment from Spaln_aa2Genome ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTC-TCCAGCCACTATATCGAAGAGAGTACTGGCG ctagatgagatgcacatagagacccaaactcctgtgtgtttgcttaccagACATTTGTCGTATGCAAATACAACACCCGCCAGTGCCAGGCTCTGTGTGTACGGTTGCCAGAACCTAGTGGCCCATCTTTTGTCcTCCAGCCACTATATTGAAGAAAGTACTGGTGgtaagtagggtactaaggggtccgggcacattgacaagtacatgaatggg Alignment from Spaln_nt2Genome ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGT-CTCCAGCCACTATATCGAAGAGAGTACTGGCG ctagatgagatgcacatagagacccaaactcctgtgtgtttgcttaccagACATTTGTCGTATGCAAATACAACACCCGCCAGTGCCAGGCTCTGTGTGTACGGTTGCCAGAACCTAGTGGCCCATCTTTTGTCCTCCAGCCACTATATTGAAGAAAGTACTGGTGgtaagtagggtactaaggggtccgggcacattgacaagtacatgaatggg Alignment from Pairagon ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGT-CTCCAGCCACTATATCGAAGAGAGTACTGGCG ctagatgagatgcacatagagacccaaactcctgtgtgtttgcttaccagACATTTGTCGTATGCAAATACAACACCCGCCAGTGCCAGGCTCTGTGTGTACGGTTGCCAGAACCTAGTGGCCCATCTTTTGTCCTCCAGCCACTATATTGAAGAAAGTACTGGTGgtaagtagggtactaaggggtccgggcacattgacaagtacatgaatggg Alignment from Exonerate_protein2genome ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTC-TCCAGCCACTATATCGAAGAGAGTACTGGCG ctagatgagatgcacatagagacccaaactcctgtgtgtttgcttaccagACATTTGTCGTATGCAAATACAACACCCGCCAGTGCCAGGCTCTGTGTGTACGGTTGCCAGAACCTAGTGGCCCATCTTTTGTCCTCCAGCCACTATATTGAAGAAAGTACTGGTGgtaagtagggtactaaggggtccgggcacattgacaagtacatgaatggg Alignment from Exonerate_coding2genome ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTC-TCCAGCCACTATATCGAAGAGAGTACTGGCG ctagatgagatgcacatagagacccaaactcctgtgtgtttgcttaccagACATTTGTCGTATGCAAATACAACACCCGCCAGTGCCAGGCTCTGTGTGTACGGTTGCCAGAACCTAGTGGCCCATCTTTTGTCCTCCAGCCACTATATTGAAGAAAGTACTGGTGgtaagtagggtactaaggggtccgggcacattgacaagtacatgaatggg Alignment from GeneWise ACCTTCCTGGTGCGGAAATCTAACACTCGCCAGTGCCAGGCTCTGTGTGTGCGGCTGCCAGAAGCTAGTGGCCCCTCTTTTGTC-TCCAGCCACTATATCGAAGAGAGTACTGGCG ctagatgagatgcacatagagacccaaactcctgtgtgtttgcttaccagACATTTGTCGTATGCAAATACAACACCCGCCAGTGCCAGGCTCTGTGTGTACGGTTGCCAGAACCTAGTGGCCCATCTTTTGTCCTCCAGCCACTATATTGAAGAAAGTACTGGTGgtaagtagggtactaaggggtccgggcacattgacaagtacatgaatggg #### Rin1_ID809_4 --> 2 - 2 Original Alignment gtGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAG-CTCATCTGTGGATACTGCCGTACCag tggggatcccactgagctagacagatagttcctaacctggtttcttccaggaATCTCTTTGGAGGTCTCAGAACTCATGTTCCAGGACCTTGTACAACCTCATC------TATTGTCGTACCaggtaagtctgtctgtgcacacctgctgagctttcaagccaactcactgcac Alignment from CESAR gtGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAG-CTCATCTGTGGATACTGCCGTACCag tggggatcccactgagctagacagatagttcctaacctggtttcttccaggaATCTCTTTGGAGGTCTCAGAACTCATGTTCCAGGACCTTGTACAACCTCATC------TATTGTCGTACCaggtaagtctgtctgtgcacacctgctgagctttcaagccaactcactgcac Alignment from Spaln_aa2Genome GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAG-CTCATCTGTGGATACTGCCGTACCAG tggggatcccactgagctagacagatagttcctaacctggtttcttccagGAATCTCTTTGGAGGTCTCAGAACTCATGTTCCAGGACCTTGTACAAcCTCATC------TATTGTCGTACCAGgtaagtctgtctgtgcacacctgctgagctttcaagccaactcactgcac Alignment from Spaln_nt2Genome GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAGC-TCATCTGTGGATACTGCCGTACCAG tggggatcccactgagctagacagatagttcctaacctggtttcttccagGAATCTCTTTGGAGGTCTCAGAACTCATGTTCCAGGACCTTGTACAACCTCATC------TATTGTCGTACCAGgtaagtctgtctgtgcacacctgctgagctttcaagccaactcactgcac Alignment from Pairagon GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAG-CTCATCTGTGGATACTGCCGTACCAG tggggatcccactgagctagacagatagttcctaacctggtttcttccagGAATCTCTTTGGAGGTCTCAGAACTCATGTTCCAGGACCTTGTACAACCTCATC------TATTGTCGTACCAGgtaagtctgtctgtgcacacctgctgagctttcaagccaactcactgcac Alignment from Exonerate_protein2genome GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAG-CTCATCTGTGGATACTGCCGTACCAG tggggatcccactgagctagacagatagttcctaacctggtttcttccagGAATCTCTTTGGAGGTCTCAGAACTCATGTTCCAGGACCTTGTACAACCTCATC------TATTGTCGTACCAGgtaagtctgtctgtgcacacctgctgagctttcaagccaactcactgcac Alignment from Exonerate_coding2genome GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAG-CTCATCTGTGGATACTGCCGTACCAG tggggatcccactgagctagacagatagttcctaacctggtttcttccagGAATCTCTTTGGAGGTCTCAGAACTCATGTTCCAGGACCTTGTACAACCTCATC------TATTGTCGTACCAGgtaagtctgtctgtgcacacctgctgagctttcaagccaactcactgcac Alignment from GeneWise GTGTCTCTTTGGAGGGCTCAGAGCTCATGTTCCAGGACCTGGTGCAG---CTCATCTGTGGATACTGCCGTACCAG tggggatcccactgagctagacagatagttcctaacctggtttcttccagGAATCTCTTTGGAGGTCTCAGAACTCATGTTCCAGGACCTTGTACAACCTCATCTATTGTCGTACCAGGTAAGTCTgtctgtgcacacctgctgagctttcaagccaactcactgcac #### Rin1_ID812_7 --> 2 - 1 Original Alignment aaTTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCC-ATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAg aagtatgatttcacaccaactcccctggatctcctttgtgttccttgcagaaTTGGTGCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAACCACTTCGACCTCATCCTGGCTGCTCGCCTACGCCACCGGCTTTCTGCTGACGGTTCTCTTGGTTGTCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGGGCCTTTGGGCCCCACTTGACTCTTTCTTCTCCAGTGGAGACAGAACAGGTATGTCAGAAGCTTCTACAGCTCCTACGTGCCTACTCACCTAGTGCCCAAGTTAAGTGGCTCCTACAGGCCTGCAAGCTGCTGTATACAGCCCTGAAGAGCCAAGCAggtagttgacaaccatcttctcctagagcatgagtcatataccacacctcc Alignment from CESAR aaTTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCC-ATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAg aagtatgatttcacaccaactcccctggatctcctttgtgttccttgcagaaTTGGTGCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAACCACTTCGACCTCATCCTGGCTGCTCGCCTACGCCACCGGCTTTCTGCTGACGGTTCTCTTGGTTGTCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGGGCCTTTGGGCCCCACTTGACTCTTTCTTCTCCAGTGGAGACAGAACAGGTATGTCAGAAGCTTCTACAGCTCCTACGTGCCTACTCACCTAGTGCCCAAGTTAAGTGGCTCCTACAGGCCTGCAAGCTGCTGTATACAGCCCTGAAGAGCCAAGCAggtagttgacaaccatcttctcctagagcatgagtcatataccacacctcc Alignment from Spaln_aa2Genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCC-ATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG aagtatgatttcacaccaactcccctggatctcctttgtgttccttgcagAATTGGTGCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAACCACTTCGACCTcATCCTGGCTGCTCGCCTACGCCACCGGCTTTCTGCTGACGGTTCTCTTGGTTGTCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGGGCCTTTGGGCCCCACTTGACTCTTTCTTCTCCAGTGGAGACAGAACAGGTATGTCAGAAGCTTCTACAGCTCCTACGTGCCTACTCACCTAGTGCCCAAGTTAAGTGGCTCCTACAGGCCTGCAAGCTGCTGTATACAGCCCTGAAGAGCCAAGCAGgtagttgacaaccatcttctcctagagcatgagtcatataccacacctcc Alignment from Spaln_nt2Genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACC-CATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG aagtatgatttcacaccaactcccctggatctcctttgtgttccttgcagAATTGGTGCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAACCACTTCGACCTCATCCTGGCTGCTCGCCTACGCCACCGGCTTTCTGCTGACGGTTCTCTTGGTTGTCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGGGCCTTTGGGCCCCACTTGACTCTTTCTTCTCCAGTGGAGACAGAACAGGTATGTCAGAAGCTTCTACAGCTCCTACGTGCCTACTCACCTAGTGCCCAAGTTAAGTGGCTCCTACAGGCCTGCAAGCTGCTGTATACAGCCCTGAAGAGCCAAGCAGgtagttgacaaccatcttctcctagagcatgagtcatataccacacctcc Alignment from Pairagon AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACC-CATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG aagtatgatttcacaccaactcccctggatctcctttgtgttccttgcagAATTGGTGCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAACCACTTCGACCTCATCCTGGCTGCTCGCCTACGCCACCGGCTTTCTGCTGACGGTTCTCTTGGTTGTCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGGGCCTTTGGGCCCCACTTGACTCTTTCTTCTCCAGTGGAGACAGAACAGGTATGTCAGAAGCTTCTACAGCTCCTACGTGCCTACTCACCTAGTGCCCAAGTTAAGTGGCTCCTACAGGCCTGCAAGCTGCTGTATACAGCCCTGAAGAGCCAAGCAGgtagttgacaaccatcttctcctagagcatgagtcatataccacacctcc Alignment from Exonerate_protein2genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCC-ATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG aagtatgatttcacaccaactcccctggatctcctttgtgttccttgcagAATTGGTGCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAACCACTTCGACCTCATCCTGGCTGCTCGCCTACGCCACCGGCTTTCTGCTGACGGTTCTCTTGGTTGTCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGGGCCTTTGGGCCCCACTTGACTCTTTCTTCTCCAGTGGAGACAGAACAGGTATGTCAGAAGCTTCTACAGCTCCTACGTGCCTACTCACCTAGTGCCCAAGTTAAGTGGCTCCTACAGGCCTGCAAGCTGCTGTATACAGCCCTGAAGAGCCAAGCAGgtagttgacaaccatcttctcctagagcatgagtcatataccacacctcc Alignment from Exonerate_coding2genome AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCC-ATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAG aagtatgatttcacaccaactcccctggatctcctttgtgttccttgcagAATTGGTGCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAACCACTTCGACCTCATCCTGGCTGCTCGCCTACGCCACCGGCTTTCTGCTGACGGTTCTCTTGGTTGTCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGGGCCTTTGGGCCCCACTTGACTCTTTCTTCTCCAGTGGAGACAGAACAGGTATGTCAGAAGCTTCTACAGCTCCTACGTGCCTACTCACCTAGTGCCCAAGTTAAGTGGCTCCTACAGGCCTGCAAGCTGCTGTATACAGCCCTGAAGAGCCAAGCAGgtagttgacaaccatcttctcctagagcatgagtcatataccacacctcc Alignment from GeneWise AATTGGTCCTGGAGAAGTCCCTGCATCGCTCTGTTCTCAAGCCTCTTCGACCC-ATTCTGGCTGCCCGCCTGCGGCGCCGGCTTTCCGCAGATGGTTCCCTCGGCCGCCTAGCTGAGGGCTTCCGCCTGGCCCGGACCCAGGGGCCTGGAGCCTTCGGGTCCCACCTGACTCTTTCTTCCCCAGTGGAGACAGAACAGGTGCGCCAGAAGCTGCTGCAGCTCCTTCGTGCCTACTCACCTAGTGCCCAGGTCAAGTGGCTCCTGCAGGCCTGCAAGCTGCTATACACAGCCCTGAAGAGCCAGGCAGGA- aagtatgatttcacaccaactcccctggatctcctttgtgttccttgcagAATTGGTGCTGGAGAAGTCCCTGCATCGCTCAGTTCTCAAACCACTTCGACCTCATCCTGGCTGCTCGCCTACGCCACCGGCTTTCTGCTGACGGTTCTCTTGGTTGTCTAGCTGAGGGCTTTCTCCTGGCCCGGACCCAGGGGCCTGGGGCCTTTGGGCCCCACTTGACTCTTTCTTCTCCAGTGGAGACAGAACAGGTATGTCAGAAGCTTCTACAGCTCCTACGTGCCTACTCACCTAGTGCCCAAGTTAAGTGGCTCCTACAGGCCTGCAAGCTGCTGTATACAGCCCTGAAGAGCCAAGCAGGTAgttgacaaccatcttctcctagagcatgagtcatataccacacctcc #### Rin1_ID813_8 --> 2 - 1 Original Alignment gaGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGAC-CTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTC---ACTGGAGAGg tgaccctaaattccagacctccagtacacttgcttttacttgggttacaggaGAAAATGCAGGAGCCGATCAGTTCCTCCCCCTGCTAAGCCTTATTTTGGCACAGTGTGACTTGCCAGACCCTCCTGTTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACCCTGCTCACTGCAGGTGAGggtaagtatccctcattgcttatatagtatgacctggtacttgttggtagg Alignment from CESAR gaGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGAC-CTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGg tgaccctaaattccagacctccagtacacttgcttttacttgggttacaggaGAAAATGCAGGAGCCGATCAGTTCCTCCCCCTGCTAAGCCTTATTTTGGCACAGTGTGACTTGCCAGACCCTCCTGTTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACCCTGCTCACTGCAGGTGAGggtaagtatccctcattgcttatatagtatgacctggtacttgttggtagg Alignment from Spaln_aa2Genome GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGAC-CTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGG tgaccctaaattccagacctccagtacacttgcttttacttgggttacagGAGAAAATGCAGGAGCCGATCAGTTCCTCCCCCTGCTAAGCCTTATTTTGGCACAGTGTGACTTGCCAGACcCTCCTGTTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACCCTGCTCACTGCAGGTGAGGgtaagtatccctcattgcttatatagtatgacctggtacttgttggtagg Alignment from Spaln_nt2Genome GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGACC-TCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACTGGAG---AGG tgaccctaaattccagacctccagtacacttgcttttacttgggttacagGAGAAAATGCAGGAGCCGATCAGTTCCTCCCCCTGCTAAGCCTTATTTTGGCACAGTGTGACTTGCCAGACCCTCCTGTTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACCCTGCTCACTGCAGGTGAGGgtaagtatccctcattgcttatatagtatgacctggtacttgttggtagg Alignment from Pairagon GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGA-CCTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACTGGA---GAGG tgaccctaaattccagacctccagtacacttgcttttacttgggttacagGAGAAAATGCAGGAGCCGATCAGTTCCTCCCCCTGCTAAGCCTTATTTTGGCACAGTGTGACTTGCCAGACCCTCCTGTTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACCCTGCTCACTGCAGGTGAGGgtaagtatccctcattgcttatatagtatgacctggtacttgttggtagg Alignment from Exonerate_protein2genome GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGAC-CTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGG tgaccctaaattccagacctccagtacacttgcttttacttgggttacagGAGAAAATGCAGGAGCCGATCAGTTCCTCCCCCTGCTAAGCCTTATTTTGGCACAGTGTGACTTGCCAGACCCTCCTGTTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACCCTGCTCACTGCAGGTGAGGgtaagtatccctcattgcttatatagtatgacctggtacttgttggtagg Alignment from Exonerate_coding2genome GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGAC-CTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGG tgaccctaaattccagacctccagtacacttgcttttacttgggttacagGAGAAAATGCAGGAGCCGATCAGTTCCTCCCCCTGCTAAGCCTTATTTTGGCACAGTGTGACTTGCCAGACCCTCCTGTTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACCCTGCTCACTGCAGGTGAGGgtaagtatccctcattgcttatatagtatgacctggtacttgttggtagg Alignment from GeneWise GAGAGAATGCAGGTGCTGATGAGTTCCTGCCTCTGCTGAGCCTTGTTTTGGCCCAGTGCGACCTTCCTGAC-CTCCTGTTAGAAGCTGAGTATATGTCAGAGCTCCTGGAACCCACCCTGCTCACT---GGAGAGG tgaccctaaattccagacctccagtacacttgcttttacttgggttacagGAGAAAATGCAGGAGCCGATCAGTTCCTCCCCCTGCTAAGCCTTATTTTGGCACAGTGTGACTTGCCAGACCCTCCTGTTGGAAGCTGAGTATATGTCAGAGCTTCTTGAACCAACCCTGCTCACTGCAGGTGAGGgtaagtatccctcattgcttatatagtatgacctggtacttgttggtagg #### Rnaseh2c_ID1104_3 --> 0 - 0 Original Alignment GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTG-TGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG attttgcatgagtgtgtccaatgtacaaacccgcgtccgggcgcgcgcagGACCGCCTTATCGGGGCCACTGGAAGCTTCAGCCATTTCACCTTGCTGGGATCTGGAAACAGTCCCAGGTCCAGATGCCATAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAgtgggtaggctgaggaaatttacctctgatggctgacaattcctctatct Alignment from CESAR GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTG-TGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG attttgcatgagtgtgtccaatgtacaaacccgcgtccgggcgcgcgcagGACCGCCTTATCGGGGCCACTGGAAGCTTCAGCCATTTCACCTTGCTGGGATCTGGAAACAGTCCCAGGTCCAGATGCCATAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAgtgggtaggctgaggaaatttacctctgatggctgacaattcctctatct Alignment from Spaln_aa2Genome GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTGTGGGGT-CTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG attttgcatgagtgtgtccaatgtacaaacccgcgtccgggcgcgcgcagGACCGCCTTATCGGGGCCACTGGAAGCTTCAGCCATTTCACCTTGCTGGGAtCTGGAAACAGTCCCAGGTCCAGATGCCATAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAgtgggtaggctgaggaaatttacctctgatggctgacaattcctctatct Alignment from Spaln_nt2Genome CCGGGGACGCGGAGGACAAAGCGGACGAGGCGCAGGAGCCGCTGGAGCGGGACTTCGACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTG-TGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG ---GTGTC-CAATGTACAAACC---CGCGTC-CGGGCGC-----GCGCAG------GACCGCCTTATCGGGGCCACTGGAAGCTTCAGCCATTTCACCTTGCTGGGATCTGGAAACAGTCCCAGGTCCAGATGCCATAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAgtgggtaggctgaggaaatttacctctgatggctgacaattcctctatct Alignment from Pairagon GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACCTTG-TGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCG attttgcatgagtgtgtccaatgtacaaacccgcgtccgggcgcgcgcagGACCGCCTTATCGGGGCCACTGGAAGCTTCAGCCATTTCACCTTGCTGGGATCTGGAAACAGTCCCAGGTCCAGATGCCATAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAgtgggtaggctgaggaaatttacctctgatggctgacaattcctctatct Alignment from Exonerate_protein2genome attttgcatgagtgtgtccaatgtacaaacccgcgtccgggcgcgcgcaggaccgccttatcggggccactggaagcttcagccatttcaccttgctgggatctggaaacagtcccaggtccagatgccatagtgcatagggccctaggatggcccaccctagcagcagcagtgggtaggctgaggaaatttacctctgatggctgacaattcctctatct Alignment from Exonerate_coding2genome attttgcatgagtgtgtccaatgtacaaacccgcgtccgggcgcgcgcaggaccgccttatcggggccactggaagcttcagccatttcaccttgctgggatctggaaacagtcccaggtccagatgccatagtgcatagggccctaggatggcccaccctagcagcagcagtgggtaggctgaggaaatttacctctgatggctgacaattcctctatct Alignment from GeneWise GACCGCCTTATCGGGGCCACCGGCAGCTTCAGCCATTTCACC-TTGTGGGGTCTGGAAACGGTCCCGGGTCCAGATGCCAAAGTGCATAGGGCCCTAGGTTGGCCCAGCCTCGCAGCAGCGATTCACGCC------CAGGTCCCTGAGGAC attttgcatgagtgtgtccaatgtacaaacccgcgtccgggcgcgcgcagGACCGCCTTATCGGGGCCACTGGAAGCTTCAGCCATTTCACCTTGCTGGGATCTGGAAACAGTCCCAGGTCCAGATGCCATAGTGCATAGGGCCCTAGGATGGCCCACCCTAGCAGCAGCAGTGGGTAGGCTGAGGAAATTTACCTCTGATggctgacaattcctctatct #### Rpp30_ID7089_9 --> 0 - 2 Original Alignment CCTTTGGAAATAAGAGGA-CCATATGACGTGGCAAACtt gtgaacaagctgtgtgctggcacaagaatcatgccctcccggacccacagCCCTTGGAAATACGAGGACCCATATGATGTGGCCAATttgtatgatatcagtataggctcattagtatgatttttggggtagtcctctc Alignment from CESAR CCTTTGGAAATAAGAGGA-CCATATGACGTGGCAAACtt gtgaacaagctgtgtgctggcacaagaatcatgccctcccggacccacagCCCTTGGAAATACGAGGACCCATATGATGTGGCCAATttgtatgatatcagtataggctcattagtatgatttttggggtagtcctctc Alignment from Spaln_aa2Genome CCTTTGGAAATAAGAGGA-CCATATGACGTGGCAAACTT gtgaacaagctgtgtgctggcacaagaatcatgccctcccggacccacagCCCTTGGAAATACGAGGAcCCATATGATGTGGCCAATTTgtatgatatcagtataggctcattagtatgatttttggggtagtcctctc Alignment from Spaln_nt2Genome CCTTTGGAAATAAGAGGACC-ATATGACGTGGCAAACTT gtgaacaagctgtgtgctggcacaagaatcatgccctcccggacccacagCCCTTGGAAATACGAGGACCCATATGATGTGGCCAATTTgtatgatatcagtataggctcattagtatgatttttggggtagtcctctc Alignment from Pairagon CCTTTGGAAATAAGAGGA-CCATATGACGTGGCAAACTT gtgaacaagctgtgtgctggcacaagaatcatgccctcccggacccacagCCCTTGGAAATACGAGGACCCATATGATGTGGCCAATTTgtatgatatcagtataggctcattagtatgatttttggggtagtcctctc Alignment from Exonerate_protein2genome CCTTTGGAAATAAGAGGA-CCATATGACGTGGCAAACTT gtgaacaagctgtgtgctggcacaagaatcatgccctcccggacccacagCCCTTGGAAATACGAGGACCCATATGATGTGGCCAATTTgtatgatatcagtataggctcattagtatgatttttggggtagtcctctc Alignment from Exonerate_coding2genome gtgaacaagctgtgtgctggcacaagaatcatgccctcccggacccacagcccttggaaatacgaggacccatatgatgtggccaatttgtatgatatcagtataggctcattagtatgatttttggggtagtcctctc Alignment from GeneWise ------------AATGTAATTCTGTCCAGTGCTGCAGAAAGGCCTTTGGAAATAAGAGGACCATATGACGTGGCAAACTT gtgaacaagCTGTGTGCTGGCACAAGAATCATGCCCTCCCGGACCCACAGCCCTTGGAAATACGAGGACCCATATGATGTGGCCAATTTgtatgatatcagtataggctcattagtatgatttttggggtagtcctctc #### Rps6kb2_ID369_13 --> 0 - 0 Original Alignment CAATCAGAAGAGGATGTGAGCCAGTTT-GATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG agattacctttcagtaccccagatcattacttcctcctttctgctggtagCAATCTGAGGAGGATGTGAGCCAGTTTCGATGCACGATTCACACGACAAACTCCAGTCGATACCCCAGATGACACAGCACTAACTGAGTGTGCCAACCAAGCCTTCCTGgtagaaggctgggattatgaggaagagcagcactgcaaggggttgtgaca Alignment from CESAR CAATCAGAAGAGGATGTGAGCCAGTTT-GATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG agattacctttcagtaccccagatcattacttcctcctttctgctggtagCAATCTGAGGAGGATGTGAGCCAGTTTCGATGCACGATTCACACGACAAACTCCAGTCGATACCCCAGATGACACAGCACTAACTGAGTGTGCCAACCAAGCCTTCCTGgtagaaggctgggattatgaggaagagcagcactgcaaggggttgtgaca Alignment from Spaln_aa2Genome CAATCAGAAGAGGATGTGAGCCAG-TTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG agattacctttcagtaccccagatcattacttcctcctttctgctggtagCAATCTGAGGAGGATGTGAGCCAGtTTCGATGCACGATTCACACGACAAACTCCAGTCGATACCCCAGATGACACAGCACTAACTGAGTGTGCCAACCAAGCCTTCCTGgtagaaggctgggattatgaggaagagcagcactgcaaggggttgtgaca Alignment from Spaln_nt2Genome CAATCAGAAGAGGATGTGAGCCAG-TTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG agattacctttcagtaccccagatcattacttcctcctttctgctggtagCAATCTGAGGAGGATGTGAGCCAGTTTCGATGCACGATTCACACGACAAACTCCAGTCGATACCCCAGATGACACAGCACTAACTGAGTGTGCCAACCAAGCCTTCCTGgtagaaggctgggattatgaggaagagcagcactgcaaggggttgtgaca Alignment from Pairagon CAATCAGAAGAGGATGTGAGCCAGTTT-GATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG agattacctttcagtaccccagatcattacttcctcctttctgctggtagCAATCTGAGGAGGATGTGAGCCAGTTTCGATGCACGATTCACACGACAAACTCCAGTCGATACCCCAGATGACACAGCACTAACTGAGTGTGCCAACCAAGCCTTCCTGgtagaaggctgggattatgaggaagagcagcactgcaaggggttgtgaca Alignment from Exonerate_protein2genome CAATCAGAAGAGGATGTGAGCCAG-TTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG agattacctttcagtaccccagatcattacttcctcctttctgctggtagCAATCTGAGGAGGATGTGAGCCAGTTTCGATGCACGATTCACACGACAAACTCCAGTCGATACCCCAGATGACACAGCACTAACTGAGTGTGCCAACCAAGCCTTCCTGgtagaaggctgggattatgaggaagagcagcactgcaaggggttgtgaca Alignment from Exonerate_coding2genome CAATCAGAAGAGGATGTGAGCCAG-TTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG agattacctttcagtaccccagatcattacttcctcctttctgctggtagCAATCTGAGGAGGATGTGAGCCAGTTTCGATGCACGATTCACACGACAAACTCCAGTCGATACCCCAGATGACACAGCACTAACTGAGTGTGCCAACCAAGCCTTCCTGgtagaaggctgggattatgaggaagagcagcactgcaaggggttgtgaca Alignment from GeneWise CAATCAGAAGAGGATGTGAGC-CAGTTTGATGCACGATTCACACGGCAGACGCCGGTAGATAGTCCAGATGACACAGCCCTCAGTGAGAGTGCCAACCAAGCCTTCCTG agattacctttcagtaccccagatcattacttcctcctttctgctggtagCAATCTGAGGAGGATGTGAGCCAGTTTCGATGCACGATTCACACGACAAACTCCAGTCGATACCCCAGATGACACAGCACTAACTGAGTGTGCCAACCAAGCCTTCCTGgtagaaggctgggattatgaggaagagcagcactgcaaggggttgtgaca #### Rps6kb2_ID370_12 --> 0 - 0 Original Alignment AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGC-CGCGTGGACCCTCCCTTCAGGCCAAGTCTG gcggggagacaagttgagttgacatagttgcagcacctctctctttctagAGGCACCCTTTTTTCCGACACATCAATTGGGATGACCTCTTAGCCTGCCCGCGTGGACCCTCTCTTCAGGCCAAGTCTGgtaagcatatggacgttgttttctctacacactatagagattacctttca Alignment from CESAR AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCGC-CGCGTGGACCCTCCCTTCAGGCCAAGTCTG gcggggagacaagttgagttgacatagttgcagcacctctctctttctagAGGCACCCTTTTTTCCGACACATCAATTGGGATGACCTCTTAGCCTGCCCGCGTGGACCCTCTCTTCAGGCCAAGTCTGgtaagcatatggacgttgttttctctacacactatagagattacctttca Alignment from Spaln_aa2Genome AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCC-CGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gcggggagacaagttgagttgacatagttgcagcacctctctctttctagAGGCACCCTTTTTTCCGACACATCAATTGGGATGACCTCTTAGCCtGCCCGCGTGGACCCTCTCTTCAGGCCAAGTCTGgtaagcatatggacgttgttttctctacacactatagagattacctttca Alignment from Spaln_nt2Genome AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCG-CCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gcggggagacaagttgagttgacatagttgcagcacctctctctttctagAGGCACCCTTTTTTCCGACACATCAATTGGGATGACCTCTTAGCCTGCCCGCGTGGACCCTCTCTTCAGGCCAAGTCTGgtaagcatatggacgttgttttctctacacactatagagattacctttca Alignment from Pairagon AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCCCG-CCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gcggggagacaagttgagttgacatagttgcagcacctctctctttctagAGGCACCCTTTTTTCCGACACATCAATTGGGATGACCTCTTAGCCTGCCCGCGTGGACCCTCTCTTCAGGCCAAGTCTGgtaagcatatggacgttgttttctctacacactatagagattacctttca Alignment from Exonerate_protein2genome AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCC-CGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gcggggagacaagttgagttgacatagttgcagcacctctctctttctagAGGCACCCTTTTTTCCGACACATCAATTGGGATGACCTCTTAGCCTGCCCGCGTGGACCCTCTCTTCAGGCCAAGTCTGgtaagcatatggacgttgttttctctacacactatagagattacctttca Alignment from Exonerate_coding2genome AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCC-CGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gcggggagacaagttgagttgacatagttgcagcacctctctctttctagAGGCACCCTTTTTTCCGACACATCAATTGGGATGACCTCTTAGCCTGCCCGCGTGGACCCTCTCTTCAGGCCAAGTCTGgtaagcatatggacgttgttttctctacacactatagagattacctttca Alignment from GeneWise AGGCACCCCTTTTTCCGGCACATCAATTGGGATGATCTCTTGGCC-CGCCGCGTGGACCCTCCCTTCAGGCCAAGTCTG gcggggagacaagttgagttgacatagttgcagcacctctctctttctagAGGCACCCTTTTTTCCGACACATCAATTGGGATGACCTCTTAGCCTGCCCGCGTGGACCCTCTCTTCAGGCCAAGTCTGgtaagcatatggacgttgttttctctacacactatagagattacctttca #### Rps6kb2_ID374_8 --> 2 - 2 Original Alignment gcCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTCACACCTTCTGT-GGCACCATTGAGTACat ttcagttttgctagtgtcaattgatcagtcggtccctccatcccctacaggtCACATCAAACTGACATACTTAGGACTTTGCAAGGAGTCGATTCATGAGGGCGCTATCAACCATACTTTCTGTCGGCACCATAGAGTACatgtaagttttgggaggggtaccacaaagggactacaactatgtgacggcta Alignment from CESAR gcCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTCACACCTTCTGT-GGCACCATTGAGTACat ttcagttttgctagtgtcaattgatcagtcggtccctccatcccctacaggtCACATCAAACTGACATACTTAGGACTTTGCAAGGAGTCGATTCATGAGGGCGCTATCAACCATACTTTCTGTCGGCACCATAGAGTACatgtaagttttgggaggggtaccacaaagggactacaactatgtgggcttgg Alignment from Spaln_aa2Genome GCCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTCACACCTTCTGT-GGCACCATTGAGTACAT ttcagttttgctagtgtcaattgatcagtcggtccctccatcccctacagGTCACATCAAACTGACATACTTAGGACTTTGCAAGGAGTCGATTCATGAGGGCGCTATCAACCATACTTTCTGTcGGCACCATAGAGTACATgtaagttttgggaggggtaccacaaagggactacaactatgtgacggcta Alignment from Spaln_nt2Genome GCCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTCACACCTTCTGT-GGCACCATTGAGTACAT ttcagttttgctagtgtcaattgatcagtcggtccctccatcccctacagGTCACATCAAACTGACATACTTAGGACTTTGCAAGGAGTCGATTCATGAGGGCGCTATCAACCATACTTTCTGTCGGCACCATAGAGTACATgtaagttttgggaggggtaccacaaagggactacaactatgtgacggcta Alignment from Pairagon GCCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTCACACCTTCTGT-GGCACCATTGAGTACAT ttcagttttgctagtgtcaattgatcagtcggtccctccatcccctacagGTCACATCAAACTGACATACTTAGGACTTTGCAAGGAGTCGATTCATGAGGGCGCTATCAACCATACTTTCTGTCGGCACCATAGAGTACATgtaagttttgggaggggtaccacaaagggactacaactatgtgacggcta Alignment from Exonerate_protein2genome GCCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTCACACCTTCTGT-GGCACCATTGAGTACAT ttcagttttgctagtgtcaattgatcagtcggtccctccatcccctacagGTCACATCAAACTGACATACTTAGGACTTTGCAAGGAGTCGATTCATGAGGGCGCTATCAACCATACTTTCTGTCGGCACCATAGAGTACATgtaagttttgggaggggtaccacaaagggactacaactatgtgacggcta Alignment from Exonerate_coding2genome GCCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTCACACCTTCTGT-GGCACCATTGAGTACAT ttcagttttgctagtgtcaattgatcagtcggtccctccatcccctacagGTCACATCAAACTGACATACTTAGGACTTTGCAAGGAGTCGATTCATGAGGGCGCTATCAACCATACTTTCTGTCGGCACCATAGAGTACATgtaagttttgggaggggtaccacaaagggactacaactatgtgacggcta Alignment from GeneWise GCCACATCAAACTGACAGACTTTGGACTTTGCAAGGAGTCCATTCATGAGGGTGCTATCACTCACACCTTCTGT-GGCACCATTGAGTACAT ttcagttttgctagtgtcaattgatcagtcggtccctccatcccctacagGTCACATCAAACTGACATACTTAGGACTTTGCAAGGAGTCGATTCATGAGGGCGCTATCAACCATACTTTCTGTCGGCACCATAGAGTACATgtaagttttgggaggggtaccacaaagggactacaactatgtgacggcta #### Rps6kb2_ID375_7 --> 1 - 1 Original Alignment cTTCTACCTGGCAGAGATCACA-CTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGg tgtgtggtagatattaagctctgcctactaatcatatgtaactgttacagtTTCTACCTTGCAGAGATCACACCTGGCACTAGGCCATCTCCATTTCCATAGCATCATTTACCGTGACCGCAAGCCTGAAAACATAATGCTCACCAGTCAGggtaagggggatgtgagcatgcctgtgtgttaaaccttcagttttgctagt Alignment from CESAR cTTCTACCTGGCAGAGATCACA-CTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGg tgtgtggtagatattaagctctgcctactaatcatatgtaactgttacagtTTCTACCTTGCAGAGATCACACCTGGCACTAGGCCATCTCCATTTCCATAGCATCATTTACCGTGACCGCAAGCCTGAAAACATAATGCTCACCAGTCAGggtaagggggatgtgagcatgcctgtgtgttaaaccttcagttttgctagt Alignment from Spaln_aa2Genome CTTCTACCTGGCAGAGATCACA-CTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG tgtgtggtagatattaagctctgcctactaatcatatgtaactgttacagTTTCTACCTTGCAGAGATCACAcCTGGCACTAGGCCATCTCCATTTCCATAGCATCATTTACCGTGACCGCAAGCCTGAAAACATAATGCTCACCAGTCAGGgtaagggggatgtgagcatgcctgtgtgttaaaccttcagttttgctagt Alignment from Spaln_nt2Genome CTTCTACCTGGCAGAGATCACAC-TAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG tgtgtggtagatattaagctctgcctactaatcatatgtaactgttacagTTTCTACCTTGCAGAGATCACACCTGGCACTAGGCCATCTCCATTTCCATAGCATCATTTACCGTGACCGCAAGCCTGAAAACATAATGCTCACCAGTCAGGgtaagggggatgtgagcatgcctgtgtgttaaaccttcagttttgctagt Alignment from Pairagon CTTCTACCTGGCAGAGATCACA-CTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG tgtgtggtagatattaagctctgcctactaatcatatgtaactgttacagTTTCTACCTTGCAGAGATCACACCTGGCACTAGGCCATCTCCATTTCCATAGCATCATTTACCGTGACCGCAAGCCTGAAAACATAATGCTCACCAGTCAGGgtaagggggatgtgagcatgcctgtgtgttaaaccttcagttttgctagt Alignment from Exonerate_protein2genome CTTCTACCTGGCAGAGATCACA-CTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG tgtgtggtagatattaagctctgcctactaatcatatgtaactgttacagTTTCTACCTTGCAGAGATCACACCTGGCACTAGGCCATCTCCATTTCCATAGCATCATTTACCGTGACCGCAAGCCTGAAAACATAATGCTCACCAGTCAGGgtaagggggatgtgagcatgcctgtgtgttaaaccttcagttttgctagt Alignment from Exonerate_coding2genome CTTCTACCTGGCAGAGATCACA-CTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG tgtgtggtagatattaagctctgcctactaatcatatgtaactgttacagTTTCTACCTTGCAGAGATCACACCTGGCACTAGGCCATCTCCATTTCCATAGCATCATTTACCGTGACCGCAAGCCTGAAAACATAATGCTCACCAGTCAGGgtaagggggatgtgagcatgcctgtgtgttaaaccttcagttttgctagt Alignment from GeneWise --------CTGGCAGAGATCACACTAGCCCTGGGCCATCTCCATTCCCACGGCATCATCTACCGGGACCTCAAGCCTGAGAACATCATGCTCAGCAGCCAGG tgtgtggtagatattaagctctgcctactaatcatatgtaactgttacagTTTCTACCTTGCAGAGATCACACCTGGCACTAGGCCATCTCCATTTCCATAGCATCATTTACCGTGACCGCAAGCCTGAAAACATAATGCTCACCAGTCAGGgtaagggggatgtgagcatgcctgtgtgttaaaccttcagttttgctagt #### Rps6kb2_ID380_2 --> 0 - 2 Original Alignment GACGTGTGTCCCCTTGGCGAATTA-AGGGCTGCTGGCCTGga gagctgatgttaggagaatgtatactttgattttttttttcccttgttagGATGTGTGTCCACTTGGCAAACTACAGGGCTGCTGGCTTGgagtgggatgaggtctagtgtagagtagaggctaggggtcgaaaagaggctt Alignment from CESAR GACGTGTGTCCCCTTGGCGAATTA-AGGGCTGCTGGCCTGga gagctgatgttaggagaatgtatactttgattttttttttcccttgttagGATGTGTGTCCACTTGGCAAACTACAGGGCTGCTGGCTTGgagtgggatgaggtctagtgtagagtagaggctaggggtcgaaaagaggctt Alignment from Spaln_aa2Genome GACGTGTGTCCCCTTGGCGAATTA-AGGGCTGCTGGCCTGGA gagctgatgttaggagaatgtatactttgattttttttttcccttgttagGATGTGTGTCCACTTGGCAAACTAcAGGGCTGCTGGCTTGGAgtgggatgaggtctagtgtagagtagaggctaggggtcgaaaagaggctt Alignment from Spaln_nt2Genome GACGTGTGTCCCCTTGGCGAATTA-AGGGCTGCTGGCCTGGA gagctgatgttaggagaatgtatactttgattttttttttcccttgttagGATGTGTGTCCACTTGGCAAACTACAGGGCTGCTGGCTTGGAgtgggatgaggtctagtgtagagtagaggctaggggtcgaaaagaggctt Alignment from Pairagon GACGTGTGTCCCCTTGGCGAATTA-AGGGCTGCTGGCCTGGA gagctgatgttaggagaatgtatactttgattttttttttcccttgttagGATGTGTGTCCACTTGGCAAACTACAGGGCTGCTGGCTTGGAgtgggatgaggtctagtgtagagtagaggctaggggtcgaaaagaggctt Alignment from Exonerate_protein2genome GACGTGTGTCCCCTTGGCGAATTA-AGGGCTGCTGGCCTGGA gagctgatgttaggagaatgtatactttgattttttttttcccttgttagGATGTGTGTCCACTTGGCAAACTACAGGGCTGCTGGCTTGGAgtgggatgaggtctagtgtagagtagaggctaggggtcgaaaagaggctt Alignment from Exonerate_coding2genome gagctgatgttaggagaatgtatactttgattttttttttcccttgttaggatgtgtgtccacttggcaaactacagggctgctggcttggagtgggatgaggtctagtgtagagtagaggctaggggtcgaaaagaggctt Alignment from GeneWise gagctgatgttaggagaatgtatactttgattttttttttcccttgttaggatgtgtgtccacttggcaaactacagggctgctggcttggagtgggatgaggtctagtgtagagtagaggctaggggtcgaaaagaggctt #### Rrp12_ID8302_21 --> 0 - 0 Original Alignment AGCAAGGTCCACGGTGTACAG-AAGAAGGCCTACCGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAGACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG tattcttacttgggcctgtttttacctgtcacttgctgacctttccccagAGTAAAGTACACGGAATACAGCAAAAAGGCTTTCCGTGTCCTGGAAGAAGTATGTGACAGCTCTCAGGGCCCAGCAGCTCACTTTTTGCAAAGCCATCGGGATGATCTGAAAAAGACTCTCCTGGACTCACTTCGGACAACATCCTCCCCTGCAAAAAGGgtaagtgctctgggttgatctaccaaatacaagtgagggtgtgtgcaagc Alignment from CESAR AGCAAGGTCCACGGTGTACAG-AAGAAGGCCTACCGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAGACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG tattcttacttgggcctgtttttacctgtcacttgctgacctttccccagAGTAAAGTACACGGAATACAGCAAAAAGGCTTTCCGTGTCCTGGAAGAAGTATGTGACAGCTCTCAGGGCCCAGCAGCTCACTTTTTGCAAAGCCATCGGGATGATCTGAAAAAGACTCTCCTGGACTCACTTCGGACAACATCCTCCCCTGCAAAAAGGgtaagtgctctgggttgatctaccaaatacaagtgagggtgtgtgcaagc Alignment from Spaln_aa2Genome AGCAAGGTCCACGGTGTACAG-AAGAAGGCCTACCGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAGACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG tattcttacttgggcctgtttttacctgtcacttgctgacctttccccagAGTAAAGTACACGGAATACAGcAAAAAGGCTTTCCGTGTCCTGGAAGAAGTATGTGACAGCTCTCAGGGCCCAGCAGCTCACTTTTTGCAAAGCCATCGGGATGATCTGAAAAAGACTCTCCTGGACTCACTTCGGACAACATCCTCCCCTGCAAAAAGGgtaagtgctctgggttgatctaccaaatacaagtgagggtgtgtgcaagc Alignment from Spaln_nt2Genome AGCAAGGTCCACGGTGTACAG-AAGAAGGCCTACCGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAGACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG tattcttacttgggcctgtttttacctgtcacttgctgacctttccccagAGTAAAGTACACGGAATACAGCAAAAAGGCTTTCCGTGTCCTGGAAGAAGTATGTGACAGCTCTCAGGGCCCAGCAGCTCACTTTTTGCAAAGCCATCGGGATGATCTGAAAAAGACTCTCCTGGACTCACTTCGGACAACATCCTCCCCTGCAAAAAGGgtaagtgctctgggttgatctaccaaatacaagtgagggtgtgtgcaagc Alignment from Pairagon AGCAAGGTCCACGGTGTACAG-AAGAAGGCCTACCGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAGACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG tattcttacttgggcctgtttttacctgtcacttgctgacctttccccagAGTAAAGTACACGGAATACAGCAAAAAGGCTTTCCGTGTCCTGGAAGAAGTATGTGACAGCTCTCAGGGCCCAGCAGCTCACTTTTTGCAAAGCCATCGGGATGATCTGAAAAAGACTCTCCTGGACTCACTTCGGACAACATCCTCCCCTGCAAAAAGGgtaagtgctctgggttgatctaccaaatacaagtgagggtgtgtgcaagc Alignment from Exonerate_protein2genome AGCAAGGTCCACGGTGTACAG-AAGAAGGCCTACCGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAGACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG tattcttacttgggcctgtttttacctgtcacttgctgacctttccccagAGTAAAGTACACGGAATACAGCAAAAAGGCTTTCCGTGTCCTGGAAGAAGTATGTGACAGCTCTCAGGGCCCAGCAGCTCACTTTTTGCAAAGCCATCGGGATGATCTGAAAAAGACTCTCCTGGACTCACTTCGGACAACATCCTCCCCTGCAAAAAGGgtaagtgctctgggttgatctaccaaatacaagtgagggtgtgtgcaagc Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise --AAGGTCCACGGTGTACAGAAGAAGGCCTACCGCGTGCTGGAGGAGGTGTGTGCCAGTTCTCAGGGCCCGGCAGCCCGCTTCGTGCAGAGCCACCTGGATGATCTGAAGAAGACTCTGCTGGACTCGCTTCGGACCACATCCTCGCCTGCTAAAAGG tattcttacttgggcctgtttttacctgtcacttgctgacctttccccagagTAAAGTACACGGAATACAGCAAAAAGGCTTTCCGTGTCCTGGAAGAAGTATGTGACAGCTCTCAGGGCCCAGCAGCTCACTTTTTGCAAAGCCATCGGGATGATCTGAAAAAGACTCTCCTGGACTCACTTCGGACAACATCCTCCCCTGCAAAAAGGgtaagtgctctgggttgatctaccaaatacaagtgagggtgtgtgcaagc #### Sart1_ID957_18 --> 0 - 0 Original Alignment GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGG-CGGATGAAGAAGCTGGATGAGGAGGCG cccacttctagtgggttcactcacccttcacgtctgcttcttcctcacagGCTTTCCGGCAACTGTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAAACTGAGCGGCTGGATGAAGAAGCTGGATGAGGAGGCAgtaaggcctgaagccaggtggccaatctccattcctgtgaaatataatat Alignment from CESAR GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGG-ATGAAGAAGCTGGATGAGGAGGCG cccacttctagtgggttcactcacccttcacgtctgcttcttcctcacagGCTTTCCGGCAACTGTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAAACTGAGCGGCTGGATGAAGAAGCTGGATGAGGAGGCAgtaaggcctgaagccaggtggccaatctccattcctgtgaaatataatat Alignment from Spaln_aa2Genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGG-CGGATGAAGAAGCTGGATGAGGAGGCG cccacttctagtgggttcactcacccttcacgtctgcttcttcctcacagGCTTTCCGGCAACTGTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAAACTGAGCGGcTGGATGAAGAAGCTGGATGAGGAGGCAgtaaggcctgaagccaggtggccaatctccattcctgtgaaatataatat Alignment from Spaln_nt2Genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGC-GGATGAAGAAGCTGGATGAGGAGGCG cccacttctagtgggttcactcacccttcacgtctgcttcttcctcacagGCTTTCCGGCAACTGTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAAACTGAGCGGCTGGATGAAGAAGCTGGATGAGGAGGCAgtaaggcctgaagccaggtggccaatctccattcctgtgaaatataatat Alignment from Pairagon GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGC-GGATGAAGAAGCTGGATGAGGAGGCG cccacttctagtgggttcactcacccttcacgtctgcttcttcctcacagGCTTTCCGGCAACTGTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAAACTGAGCGGCTGGATGAAGAAGCTGGATGAGGAGGCAgtaaggcctgaagccaggtggccaatctccattcctgtgaaatataatat Alignment from Exonerate_protein2genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGG-ATGAAGAAGCTGGATGAGGAGGCG cccacttctagtgggttcactcacccttcacgtctgcttcttcctcacagGCTTTCCGGCAACTGTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAAACTGAGCGGCTGGATGAAGAAGCTGGATGAGGAGGCAgtaaggcctgaagccaggtggccaatctccattcctgtgaaatataatat Alignment from Exonerate_coding2genome GCATTCCGGCAGCTGTCCCACCGCTTCCACGGAAAGGGCTCAGGCAAGATGAAGACTGAGCGGCGG-ATGAAGAAGCTGGATGAGGAGGCG cccacttctagtgggttcactcacccttcacgtctgcttcttcctcacagGCTTTCCGGCAACTGTCCCACCGCTTCCATGGAAAGGGCTCAGGCAAGATGAAAACTGAGCGGCTGGATGAAGAAGCTGGATGAGGAGGCAgtaaggcctgaagccaggtggccaatctccattcctgtgaaatataatat Alignment from GeneWise cccacttctagtgggttcactcacccttcacgtctgcttcttcctcacaggctttccggcaactgtcccaccgcttccatggaaagggctcaggcaagatgaaaactgagcggctggatgaagaagctggatgaggaggcagtaaggcctgaagccaggtggccaatctccattcctgtgaaatataatat #### Sart1_ID959_16 --> 2 - 2 Original Alignment gaCTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCC-AATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGat agggctcaagaatttcctgttcccaggaacgctcctctcctttgtcataggaCTGCTAGAAACCACAGTACAAAAGGTTGCCTGGGTGGAGGCTCCCCAATAGGACCTTGCCTTCAGCAGTGTACTGCATAGAGGATAAGatgtacgttttatcaaggcaaaatgccatagtaactgctatgaacatgggga Alignment from CESAR gaCTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCC-AATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGat agggctcaagaatttcctgttcccaggaacgctcctctcctttgtcataggaCTGCTAGAAACCACAGTACAAAAGGTTGCCTGGGTGGAGGCTCCCCAATAGGACCTTGCCTTCAGCAGTGTACTGCATAGAGGATAAGatgtacgttttatcaaggcaaaatgccatagtaactgctatgaacatgggga Alignment from Spaln_aa2Genome GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCC-AATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT agggctcaagaatttcctgttcccaggaacgctcctctcctttgtcatagGACTGCTAGAAACCACAGTACAAAAGGTTGCCTGGGTGGAGGCTCCCcAATAGGACCTTGCCTTCAGCAGTGTACTGCATAGAGGATAAGATgtacgttttatcaaggcaaaatgccatagtaactgctatgaacatgggga Alignment from Spaln_nt2Genome GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCTCCCA-ATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT agggctcaagaatttcctgttcccaggaacgctcctctcctttgtcatagGACTGCTAGAAACCACAGTACAAAAGGTTGCCTGGGTGGAGGCTCCCCAATAGGACCTTGCCTTCAGCAGTGTACTGCATAGAGGATAAGATgtacgttttatcaaggcaaaatgccatagtaactgctatgaacatgggga Alignment from Pairagon GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCT-CCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT agggctcaagaatttcctgttcccaggaacgctcctctcctttgtcatagGACTGCTAGAAACCACAGTACAAAAGGTTGCCTGGGTGGAGGCTCCCCAATAGGACCTTGCCTTCAGCAGTGTACTGCATAGAGGATAAGATgtacgttttatcaaggcaaaatgccatagtaactgctatgaacatgggga Alignment from Exonerate_protein2genome GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCT-CCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT agggctcaagaatttcctgttcccaggaacgctcctctcctttgtcatagGACTGCTAGAAACCACAGTACAAAAGGTTGCCTGGGTGGAGGCTCCCCAATAGGACCTTGCCTTCAGCAGTGTACTGCATAGAGGATAAGATgtacgttttatcaaggcaaaatgccatagtaactgctatgaacatgggga Alignment from Exonerate_coding2genome GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAGGCT-CCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT agggctcaagaatttcctgttcccaggaacgctcctctcctttgtcatagGACTGCTAGAAACCACAGTACAAAAGGTTGCCTGGGTGGAGGCTCCCCAATAGGACCTTGCCTTCAGCAGTGTACTGCATAGAGGATAAGATgtacgttttatcaaggcaaaatgccatagtaactgctatgaacatgggga Alignment from GeneWise GACTGCTGGAGACCACAGTACAAAAGGTGGCCCGGGTGAAG-GCTCCCAATAAGTCACTGCCCTCAGCAGTGTACTGCATCGAGGATAAGAT agggctcaagaatttcctgttcccaggaacgctcctctcctttgtcatagGACTGCTAGAAACCACAGTACAAAAGGTTGCCTGGGTGGAGGCTCCCCAATAGGACCTTGCCTTCAGCAGTGTACTGCATAGAGGATAAGATgtacgttttatcaaggcaaaatgccatagtaactgctatgaacatgggga #### Sart1_ID962_13 --> 0 - 0 Original Alignment GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAG-GAGCAGGAAGAGCTCATG aggcttataaattgtgtactgcctataacttctgctgtctgtcaatccagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCGTCAGCGTGGTTGGGAGGAGGGGGAGGACCCAAAGAGGAAGGGGACATCAGTTTTCAATGCCACATCAGAATTTTGCTGTATACTAGGGGAATCTCCCACATATGAGTTGGTGGGTAACCGTGAGCGGGCAGGAGGAGCTGATGgtgagacaatcaattcttagcttttattgtaaggctagtgatgcatctag Alignment from CESAR GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAG-GAGCAGGAAGAGCTCATG aggcttataaattgtgtactgcctataacttctgctgtctgtcaatccagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCGTCAGCGTGGTTGGGAGGAGGGGGAGGACCCAAAGAGGAAGGGGACATCAGTTTTCAATGCCACATCAGAATTTTGCTGTATACTAGGGGAATCTCCCACATATGAGTTGGTGGGTAACCGTGAGCGGGCAGGAGGAGCTGATGgtgagacaatcaattcttagcttttattgtaaggctagtgatgcatctag Alignment from Spaln_aa2Genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAG-GAGCAGGAAGAGCTCATG aggcttataaattgtgtactgcctataacttctgctgtctgtcaatccagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCGTCAGCGTGGTTGGGAGGAGGGGGAGGACCCAAAGAGGAAGGGGACATCAGTTTTCAATGCCACATCAGAATTTTGCTGTATACTAGGGGAATCTCCCACATATGAGTTGGTGGGTAACCGTGAGcGGGCAGGAGGAGCTGATGgtgagacaatcaattcttagcttttattgtaaggctagtgatgcatctag Alignment from Spaln_nt2Genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAG-GAGCAGGAAGAGCTCATG aggcttataaattgtgtactgcctataacttctgctgtctgtcaatccagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCGTCAGCGTGGTTGGGAGGAGGGGGAGGACCCAAAGAGGAAGGGGACATCAGTTTTCAATGCCACATCAGAATTTTGCTGTATACTAGGGGAATCTCCCACATATGAGTTGGTGGGTAACCGTGAGCGGGCAGGAGGAGCTGATGgtgagacaatcaattcttagcttttattgtaaggctagtgatgcatctag Alignment from Pairagon GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAG-GAGCAGGAAGAGCTCATG aggcttataaattgtgtactgcctataacttctgctgtctgtcaatccagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCGTCAGCGTGGTTGGGAGGAGGGGGAGGACCCAAAGAGGAAGGGGACATCAGTTTTCAATGCCACATCAGAATTTTGCTGTATACTAGGGGAATCTCCCACATATGAGTTGGTGGGTAACCGTGAGCGGGCAGGAGGAGCTGATGgtgagacaatcaattcttagcttttattgtaaggctagtgatgcatctag Alignment from Exonerate_protein2genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAG-CAGGAAGAGCTCATG aggcttataaattgtgtactgcctataacttctgctgtctgtcaatccagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCGTCAGCGTGGTTGGGAGGAGGGGGAGGACCCAAAGAGGAAGGGGACATCAGTTTTCAATGCCACATCAGAATTTTGCTGTATACTAGGGGAATCTCCCACATATGAGTTGGTGGGTAACCGTGAGCGGGCAGGAGGAGCTGATGgtgagacaatcaattcttagcttttattgtaaggctagtgatgcatctag Alignment from Exonerate_coding2genome GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAGGAG-CAGGAAGAGCTCATG aggcttataaattgtgtactgcctataacttctgctgtctgtcaatccagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCGTCAGCGTGGTTGGGAGGAGGGGGAGGACCCAAAGAGGAAGGGGACATCAGTTTTCAATGCCACATCAGAATTTTGCTGTATACTAGGGGAATCTCCCACATATGAGTTGGTGGGTAACCGTGAGCGGGCAGGAGGAGCTGATGgtgagacaatcaattcttagcttttattgtaaggctagtgatgcatctag Alignment from GeneWise GTGCTGGAGATTGTGAAGAAACTGGAGTCTCGCCAGCGCGGCTGGGAGGAGGAGGAGGACCCTGAGAGGAAGGGGACCATCGTGTTCAATGCCACTTCTGAATTCTGCCGCACGCTGGGGGAGATCCCCACCTACGGGTTGGCTGGCAACCGCGAG-GAGCAGGAAGAGCTCATG aggcttataaattgtgtactgcctataacttctgctgtctgtcaatccagGTGCTGGAGATTGTGAAGAAACTAGAGTCCCGTCAGCGTGGTTGGGAGGAGGGGGAGGACCCAAAGAGGAAGGGGACATCAGTTTTCAATGCCACATCAGAATTTTGCTGTATACTAGGGGAATCTCCCACATATGAGTTGGTGGGTAACCGTGAGCGGGCAGGAGGAGCTGATGgtgagacaatcaattcttagcttttattgtaaggctagtgatgcatctag #### Sart1_ID963_12 --> 2 - 0 Original Alignment agGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTG-GAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG aggcaagggtatcacttgtgaaggcacagtctccccactctttaacacagaaGATGGGGGGGCTCTCCCGCCAGGGGCACCAGATGGACTGGAGGAAGATGAGGCAGAACTGGAATTACAAAAGCAGCTACGAGAAGGGGCGTCGGCTGCGGCAACTACAGCAACTACAGCAGCTCAGAGATAGTGGGGAGAAGgtgagtctcagcaaatagattgtaatgaggggactttgcactcttgagat Alignment from CESAR agGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTG-GAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG aggcaagggtatcacttgtgaaggcacagtctccccactctttaacacagaaGATGGGGGGGCTCTCCCGCCAGGGGCACCAGATGGACTGGAGGAAGATGAGGCAGAACTGGAATTACAAAAGCAGCTACGAGAAGGGGCGTCGGCTGCGGCAACTACAGCAACTACAGCAGCTCAGAGATAGTGGGGAGAAGgtgagtctcagcaaatagattgtaatgaggggactttgcactcttgagat Alignment from Spaln_aa2Genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTG-GAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG aggcaagggtatcacttgtgaaggcacagtctccccactctttaacacagAAGATGGGGGGGCTCTCCCGCCAGGGGCACCAGATGGACTGGAGGAAGATGAGGCAGAACTGGAATTACAAAAGCAGCTAcGAGAAGGGGCGTCGGCTGCGGCAACTACAGCAACTACAGCAGCTCAGAGATAGTGGGGAGAAGgtgagtctcagcaaatagattgtaatgaggggactttgcactcttgagat Alignment from Spaln_nt2Genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTG-GAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG aggcaagggtatcacttgtgaaggcacagtctccccactctttaacacagAAGATGGGGGGGCTCTCCCGCCAGGGGCACCAGATGGACTGGAGGAAGATGAGGCAGAACTGGAATTACAAAAGCAGCTACGAGAAGGGGCGTCGGCTGCGGCAACTACAGCAACTACAGCAGCTCAGAGATAGTGGGGAGAAGgtgagtctcagcaaatagattgtaatgaggggactttgcactcttgagat Alignment from Pairagon AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTG-GAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG aggcaagggtatcacttgtgaaggcacagtctccccactctttaacacagAAGATGGGGGGGCTCTCCCGCCAGGGGCACCAGATGGACTGGAGGAAGATGAGGCAGAACTGGAATTACAAAAGCAGCTACGAGAAGGGGCGTCGGCTGCGGCAACTACAGCAACTACAGCAGCTCAGAGATAGTGGGGAGAAGgtgagtctcagcaaatagattgtaatgaggggactttgcactcttgagat Alignment from Exonerate_protein2genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTG-GAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG aggcaagggtatcacttgtgaaggcacagtctccccactctttaacacagAAGATGGGGGGGCTCTCCCGCCAGGGGCACCAGATGGACTGGAGGAAGATGAGGCAGAACTGGAATTACAAAAGCAGCTACGAGAAGGGGCGTCGGCTGCGGCAACTACAGCAACTACAGCAGCTCAGAGATAGTGGGGAGAAGgtgagtctcagcaaatagattgtaatgaggggactttgcactcttgagat Alignment from Exonerate_coding2genome AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAGCTG-GAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG aggcaagggtatcacttgtgaaggcacagtctccccactctttaacacagAAGATGGGGGGGCTCTCCCGCCAGGGGCACCAGATGGACTGGAGGAAGATGAGGCAGAACTGGAATTACAAAAGCAGCTACGAGAAGGGGCGTCGGCTGCGGCAACTACAGCAACTACAGCAGCTCAGAGATAGTGGGGAGAAGgtgagtctcagcaaatagattgtaatgaggggactttgcactcttgagat Alignment from GeneWise AGGATGGGGGAGCTCTTCCGCCAGGGTCCCCAGAGGGGCTGGAGGAAGACGAGGCAGAGCTGGAGCTGCAGAAGCAG-CTGGAGAAGGGGCGCCGGCTGCGGCAGCTGCAGCAACTGCAGCAGCTCCGAGACAGTGGTGAGAAG aggcaagggtatcacttgtgaaggcacagtctccccactctttaacacagAAGATGGGGGGGCTCTCCCGCCAGGGGCACCAGATGGACTGGAGGAAGATGAGGCAGAACTGGAATTACAAAAGCAGCTACGAGAAGGGGCGTCGGCTGCGGCAACTACAGCAACTACAGCAGCTCAGAGATAGTGGGGAGAAGgtgagtctcagcaaatagattgtaatgaggggactttgcactcttgagat #### Sart1_ID964_11 --> 1 - 1 Original Alignment gCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAG-GCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAg ggagaaattcaaaagacataatttacacggaaaatatgctctctctgcaggCTTCGGGGCCGGGGTAGGCACCAAGTTCCC------AAGGAGGAGCACACTTGAGGATGAGGAGAAGGACCTCGTGGCCAAACCACCTCCATCAGATGACACTCGAGTC------ATGGACATCAGCGATGAAggtaacttgttgagtaataggggccggggtaaatctgcaggcaagggtatc Alignment from CESAR gCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAg ggagaaattcaaaagacataatttacacggaaaatatgctctctctgcaggCTTCGGGGCCGGGGTAGGCACCAAGTTCCCAAG---GAGGAG--CACACTTGAGGATGAGGAGAAGGACCTCGTGGCCAAACCACCTCCATCAGATGACACTCGAGTC------ATGGACATCAGCGATGAAggtaacttgttgagtaataggggccggggtaaatctgcaggcaagggtatc Alignment from Spaln_aa2Genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG ggagaaattcaaaagacataatttacacggaaaatatgctctctctgcagGCTTCGGGGCCGGGGTAGGCACCAAGTTCCCAAGGAGGAGC-----ACACTTGAGGATGAGGAGAAGGACCTCGTGGCCAAACCACCTCCATCAGATGACACTCGAGTC------ATGGACATCAGCGATGAAGgtaacttgttgagtaataggggccggggtaaatctgcaggcaagggtatc Alignment from Spaln_nt2Genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG ggagaaattcaaaagacataatttacacggaaaatatgctctctctgcagGCTTCGGGGCCGGGGTAGGCACCAAGTTCCCAAGGAGGAGCA-----CACTTGAGGATGAGGAGAAGGACCTCGTGGCCAAACCACCTCCATCAGATGACACTCGAGT------CATGGACATCAGCGATGAAGgtaacttgttgagtaataggggccggggtaaatctgcaggcaagggtatc Alignment from Pairagon GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG ggagaaattcaaaagacataatttacacggaaaatatgctctctctgcagGCTTCGGGGCCGGGGTAGGCACCAAGTTCCCAAGGAGGAGCA-----CACTTGAGGATGAGGAGAAGGACCTCGTGGCCAAACCACCTCCATCAGATGACACTCGAGT------CATGGACATCAGCGATGAAGgtaacttgttgagtaataggggccggggtaaatctgcaggcaagggtatc Alignment from Exonerate_protein2genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAG-GCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG ggagaaattcaaaagacataatttacacggaaaatatgctctctctgcagGCTTCGGGGCCGGGGTAGGCACCAAGTTCCC------AAGGAGGAGCACACTTGAGGATGAGGAGAAGGACCTCGTGGCCAAACCACCTCCATCAGATGACACTCGAGTC------ATGGACATCAGCGATGAAGgtaacttgttgagtaataggggccggggtaaatctgcaggcaagggtatc Alignment from Exonerate_coding2genome GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAG-GCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG ggagaaattcaaaagacataatttacacggaaaatatgctctctctgcagGCTTCGGGGCCGGGGTAGGCACCAAGTTCCC------AAGGAGGAGCACACTTGAGGATGAGGAGAAGGACCTCGTGGCCAAACCACCTCCATCAGATGACACTCGAGTC------ATGGACATCAGCGATGAAGgtaacttgttgagtaataggggccggggtaaatctgcaggcaagggtatc Alignment from GeneWise GCTCCGGGGCCGGGGTCGGCGCCGAGTTCCTGAGGTGGAGGAGGAGGCCCTTGAGGATGAGGAGAAGGACCCTGTGGCCCAGCCGCCACCATCGGATGACACTCGAGTAGAGAACATGGACATCAGTGATGAAG ggagaaattcaaaagacataatttacacggaaaatatgctctctctgcagGCTTCGGGGCCGGGGTAGGCACCAAGTTCCCAAG---GAGGAGCACA--CTTGAGGATGAGGAGAAGGACCTCGTGGCCAAACCACCTCCATCAGATGACACTCGAGTC------ATGGACATCAGCGATGAAGgtaacttgttgagtaataggggccggggtaaatctgcaggcaagggtatc #### Sart1_ID966_9 --> 0 - 0 Original Alignment ACAG CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCC-GATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG ACAGgtaagtctagtaagtctgagagaaaagccttcttcttccttcttagCAAAAACCTCGCTCAATTCTAGCTAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTGCCGTCTTGAGCAAGGTGGGATGGCTCGATGGACTGAGGGAAAAAGAGTTAGAAGAAATCCGCACCAAGCTTCGACTACCAGCCCAATCTCTAAGTTCCATGGGCCCCAGACTTGCTACTCAGTATCTCAGTCCTGAAGAGATGgtaagacaccaggttatgatcatctattcagccggcagctaatccaagca Alignment from CESAR ACAG CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCC-GATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG ACAGgtgagcctagtaagtctgagagaaaagccttcttcttccttcttagCAAAAACCTCGCTCAATTCTAGCTAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTGCCGTCTTGAGCAAGGTGGGATGGCTCGATGGACTGAGGGAAAAAGAGTTAGAAGAAATCCGCACCAAGCTTCGACTACCAGCCCAATCTCTAAGTTCCATGGGCCCCAGACTTGCTACTCAGTATCTCAGTCCTGAAGAGATGgtaagacaccaggttatgatcatctattcagccggcagctaatccaagca Alignment from Spaln_aa2Genome ACAG CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCC-GATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG ACAGgtaagtctagtaagtctgagagaaaagccttcttcttccttcttagCAAAAACCTCGCTCAATTCTAGCTAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTGCCGTCTTGAGCAAGGTGGGATGGCTcGATGGACTGAGGGAAAAAGAGTTAGAAGAAATCCGCACCAAGCTTCGACTACCAGCCCAATCTCTAAGTTCCATGGGCCCCAGACTTGCTACTCAGTATCTCAGTCCTGAAGAGATGgtaagacaccaggttatgatcatctattcagccggcagctaatccaagca Alignment from Spaln_nt2Genome ACAG CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGC-CGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG ACAGgtaagtctagtaagtctgagagaaaagccttcttcttccttcttagCAAAAACCTCGCTCAATTCTAGCTAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTGCCGTCTTGAGCAAGGTGGGATGGCTCGATGGACTGAGGGAAAAAGAGTTAGAAGAAATCCGCACCAAGCTTCGACTACCAGCCCAATCTCTAAGTTCCATGGGCCCCAGACTTGCTACTCAGTATCTCAGTCCTGAAGAGATGgtaagacaccaggttatgatcatctattcagccggcagctaatccaagca Alignment from Pairagon ACAG CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGC-CGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG ACAGgtaagtctagtaagtctgagagaaaagccttcttcttccttcttagCAAAAACCTCGCTCAATTCTAGCTAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTGCCGTCTTGAGCAAGGTGGGATGGCTCGATGGACTGAGGGAAAAAGAGTTAGAAGAAATCCGCACCAAGCTTCGACTACCAGCCCAATCTCTAAGTTCCATGGGCCCCAGACTTGCTACTCAGTATCTCAGTCCTGAAGAGATGgtaagacaccaggttatgatcatctattcagccggcagctaatccaagca Alignment from Exonerate_protein2genome ACAG CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCC-GATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG ACAGgtaagtctagtaagtctgagagaaaagccttcttcttccttcttagCAAAAACCTCGCTCAATTCTAGCTAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTGCCGTCTTGAGCAAGGTGGGATGGCTCGATGGACTGAGGGAAAAAGAGTTAGAAGAAATCCGCACCAAGCTTCGACTACCAGCCCAATCTCTAAGTTCCATGGGCCCCAGACTTGCTACTCAGTATCTCAGTCCTGAAGAGATGgtaagacaccaggttatgatcatctattcagccggcagctaatccaagca Alignment from Exonerate_coding2genome ACAG CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATGGCC-GATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG ACAGgtaagtctagtaagtctgagagaaaagccttcttcttccttcttagCAAAAACCTCGCTCAATTCTAGCTAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTGCCGTCTTGAGCAAGGTGGGATGGCTCGATGGACTGAGGGAAAAAGAGTTAGAAGAAATCCGCACCAAGCTTCGACTACCAGCCCAATCTCTAAGTTCCATGGGCCCCAGACTTGCTACTCAGTATCTCAGTCCTGAAGAGATGgtaagacaccaggttatgatcatctattcagccggcagctaatccaagca Alignment from GeneWise ACAG CAAAAACCTCGTTCTATCCTGGCCAAATATGATGAGGAACTGGAGGGCGAGCGACCACATTCCTTCCGTCTGGAGCAGGGTGGGATG-GCCGATGGCCTGAGGGAACGAGAGTTAGAAGAAATCCGCACCAAGCTACGGCTGCAGGCTCAGTCTCTGAGCTCCGTAGGGCCCCGGCTTGCCTCTGAGTACCTCAGTCCCGAGGAGATG ACAGgtaagtctagtaagtctgagagaaaagccttcttcttccttcttagCAAAAACCTCGCTCAATTCTAGCTAAATATGATGAAGAATTAGAGGGTGAGCGACCACATTCCTGCCGTCTTGAGCAAGGTGGGATGGCTCGATGGACTGAGGGAAAAAGAGTTAGAAGAAATCCGCACCAAGCTTCGACTACCAGCCCAATCTCTAAGTTCCATGGGCCCCAGACTTGCTACTCAGTATCTCAGTCCTGAAGAGATGgtaagacaccaggttatgatcatctattcagccggcagctaatccaagca #### Sart1_ID968_7 --> 0 - 1 Original Alignment GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAG-ACTGTGGTCCTCACCCTCAAGGACAAAg acagattcagcttgtaccctggtttctgaataaatctttctattttttagGACCTGTACAGTGCCCGAGACCTGCAGGGCCTCACTGTGGAACATGCTATTGATTCTTTTCAAGAAGGGGAGCACTGTGGTTCTCACCCTCAAAGACAAAggtaagtggtatctgggatgcttaagggtagaacatgattgacatcatctc Alignment from CESAR GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAG-ACTGTGGTCCTCACCCTCAAGGACAAAg acagattcagcttgtaccctggtttctgaataaatctttctattttttagGACCTGTACAGTGCCCGAGACCTGCAGGGCCTCACTGTGGAACATGCTATTGATTCTTTTCAAGAAGGGGAGCACTGTGGTTCTCACCCTCAAAGACAAAggtaagtggtatctgggatgcttaagggtagaacatgattgttgctaatta Alignment from Spaln_aa2Genome GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAG-ACTGTGGTCCTCACCCTCAAGGACAAAG acagattcagcttgtaccctggtttctgaataaatctttctattttttagGACCTGTACAGTGCCCGAGACCTGCAGGGCCTCACTGTGGAACATGCTATTGATTCTTTTCAAGAAGGGGAGcACTGTGGTTCTCACCCTCAAAGACAAAGgtaagtggtatctgggatgcttaagggtagaacatgattgacatcatctc Alignment from Spaln_nt2Genome GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAG-ACTGTGGTCCTCACCCTCAAGGACAAAG acagattcagcttgtaccctggtttctgaataaatctttctattttttagGACCTGTACAGTGCCCGAGACCTGCAGGGCCTCACTGTGGAACATGCTATTGATTCTTTTCAAGAAGGGGAGCACTGTGGTTCTCACCCTCAAAGACAAAGgtaagtggtatctgggatgcttaagggtagaacatgattgacatcatctc Alignment from Pairagon GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAG-ACTGTGGTCCTCACCCTCAAGGACAAAG acagattcagcttgtaccctggtttctgaataaatctttctattttttagGACCTGTACAGTGCCCGAGACCTGCAGGGCCTCACTGTGGAACATGCTATTGATTCTTTTCAAGAAGGGGAGCACTGTGGTTCTCACCCTCAAAGACAAAGgtaagtggtatctgggatgcttaagggtagaacatgattgacatcatctc Alignment from Exonerate_protein2genome GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAG-ACTGTGGTCCTCACCCTCAAGGACAAAG acagattcagcttgtaccctggtttctgaataaatctttctattttttagGACCTGTACAGTGCCCGAGACCTGCAGGGCCTCACTGTGGAACATGCTATTGATTCTTTTCAAGAAGGGGAGCACTGTGGTTCTCACCCTCAAAGACAAAGgtaagtggtatctgggatgcttaagggtagaacatgattgacatcatctc Alignment from Exonerate_coding2genome GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAG-ACTGTGGTCCTCACCCTCAAGGACAAAG acagattcagcttgtaccctggtttctgaataaatctttctattttttagGACCTGTACAGTGCCCGAGACCTGCAGGGCCTCACTGTGGAACATGCTATTGATTCTTTTCAAGAAGGGGAGCACTGTGGTTCTCACCCTCAAAGACAAAGgtaagtggtatctgggatgcttaagggtagaacatgattgacatcatctc Alignment from GeneWise GACCTGTACAGTGCCCGGGACCTGCAAGGCCTCACTGTGGAACATGCCATCGATTCTTTTCGAGAAGGGGAG-ACTGTGGTCCTCACCCTCAAGGACAAAG acagattcagcttgtaccctggtttctgaataaatctttctattttttagGACCTGTACAGTGCCCGAGACCTGCAGGGCCTCACTGTGGAACATGCTATTGATTCTTTTCAAGAAGGGGAGCACTGTGGTTCTCACCCTCAAAGACAAAGgtaagtggtatctgggatgcttaagggtagaacatgattgacatcatctc #### Sart1_ID969_6 --> 0 - 0 Original Alignment GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAG-TTTGAGCAGAGGCGACAG ctacacgtcaatttacccagcctttttcgcaacaaactgctttctctaagGCTAAGCTGTTGGAGGAAATGGGTCAAGAGTTTGGTGTGAGCACTTTAGTTGAGGAAGAGCTTTGAGCAGAAGCGACAGgtgaggacccagttgccagaattatctggtagtcacaatttcaattttgg Alignment from CESAR GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAG-TTTGAGCAGAGGCGACAG ctacacgtcaatttacccagcctttttcgcaacaaactgctttctctaagGCTAAGCTGTTGGAGGAAATGGGTCAAGAGTTTGGTGTGAGCACTTTAGTTGAGGAAGAGCTTTGAGCAGAAGCGACAGgtgaggacccagttgccagaattatctggtagtcacaatttcaattttgg Alignment from Spaln_aa2Genome GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAG-TTTGAGCAGAGGCGACAG ctacacgtcaatttacccagcctttttcgcaacaaactgctttctctaagGCTAAGCTGTTGGAGGAAATGGGTCAAGAGTTTGGTGTGAGCACTTTAGTTGAGGAAGAGcTTTGAGCAGAAGCGACAGgtgaggacccagttgccagaattatctggtagtcacaatttcaattttgg Alignment from Spaln_nt2Genome GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAG-TTTGAGCAGAGGCGACAG ctacacgtcaatttacccagcctttttcgcaacaaactgctttctctaagGCTAAGCTGTTGGAGGAAATGGGTCAAGAGTTTGGTGTGAGCACTTTAGTTGAGGAAGAGCTTTGAGCAGAAGCGACAGgtgaggacccagttgccagaattatctggtagtcacaatttcaattttgg Alignment from Pairagon GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAG-TTTGAGCAGAGGCGACAG ctacacgtcaatttacccagcctttttcgcaacaaactgctttctctaagGCTAAGCTGTTGGAGGAAATGGGTCAAGAGTTTGGTGTGAGCACTTTAGTTGAGGAAGAGCTTTGAGCAGAAGCGACAGgtgaggacccagttgccagaattatctggtagtcacaatttcaattttgg Alignment from Exonerate_protein2genome GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAG-TTTGAGCAGAGGCGACAG ctacacgtcaatttacccagcctttttcgcaacaaactgctttctctaagGCTAAGCTGTTGGAGGAAATGGGTCAAGAGTTTGGTGTGAGCACTTTAGTTGAGGAAGAGCTTTGAGCAGAAGCGACAGgtgaggacccagttgccagaattatctggtagtcacaatttcaattttgg Alignment from Exonerate_coding2genome GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAGGAG-TTTGAGCAGAGGCGACAG ctacacgtcaatttacccagcctttttcgcaacaaactgctttctctaagGCTAAGCTGTTGGAGGAAATGGGTCAAGAGTTTGGTGTGAGCACTTTAGTTGAGGAAGAGCTTTGAGCAGAAGCGACAGgtgaggacccagttgccagaattatctggtagtcacaatttcaattttgg Alignment from GeneWise GCTAAGCTACTAGAGGAGATGGACCAAGAGTTTGGTGTGAGCACTTTAGTGGAGGAG-GAGTTTGAGCAGAGGCGACAG ctacacgtcaatttacccagcctttttcgcaacaaactgctttctctaagGCTAAGCTGTTGGAGGAAATGGGTCAAGAGTTTGGTGTGAGCACTTTAGTTGAGGAAGAGCTTTGAGCAGAAGCGACAGgtgaggacccagttgccagaattatctggtagtcacaatttcaattttgg #### Sart1_ID970_5 --> 1 - 0 Original Alignment gAAAATAAAGACACTG-GGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttaatctacccaagggtggggaagctggtcaaaccttcctttaattcaagtAAAGTGAAAACTCTGCGGAGAAGACGACCCCTGGCTGGACGATACTGCAGCATGGATAGAGAGGAGC------CTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgtactgacacaaggttcttcaagatcaccgtctacacgtcaatttaccca Alignment from CESAR gAAAATAAAGACACTG-GGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttaatctacccaagggtggggaagctggtcaaaccttcctttaattcaagtAAAGTGAAAACTCTGCGGAGAAGACGACCCCTGGCTGGACGATACTGCAGCATGGATAGAGAGGAGC------CTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgtactgacacaaggttcttcaagatcaccgtctacacgtcaatttaccca Alignment from Spaln_aa2Genome GAAAATAAAGACACTG-GGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttaatctacccaagggtggggaagctggtcaaaccttcctttaattcaagTAAAGTGAAAACTCTGcGGAGAAGACGACCCCTGGCTGGACGATACTGCAGCATGGATAGAGAGGAGCCTCCAG------AAAGAGAAGGATCTGGCAGAGAAGAGGgtactgacacaaggttcttcaagatcaccgtctacacgtcaatttaccca Alignment from Spaln_nt2Genome GAAAATAAAGACACTGGGG-GAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttaatctacccaagggtggggaagctggtcaaaccttcctttaattcaagTAAAGTGAAAACTCTGCGGAGAAGACGACCCCTGGCTGGACGATACTGCAGCATGGATAGAGAGGAGC------CTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgtactgacacaaggttcttcaagatcaccgtctacacgtcaatttaccca Alignment from Pairagon GAAAATAAAGACACTG-GGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttaatctacccaagggtggggaagctggtcaaaccttcctttaattcaagTAAAGTGAAAACTCTGCGGAGAAGACGACCCCTGGCTGGACGATACTGCAGCATGGATAGAGAGGAGC------CTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgtactgacacaaggttcttcaagatcaccgtctacacgtcaatttaccca Alignment from Exonerate_protein2genome GAAAATAAAGACACTG-GGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttaatctacccaagggtggggaagctggtcaaaccttcctttaattcaagTAAAGTGAAAACTCTGCGGAGAAGACGACCCCTGGCTGGACGATACTGCAGCATGGATAGAGAGGAGC------CTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgtactgacacaaggttcttcaagatcaccgtctacacgtcaatttaccca Alignment from Exonerate_coding2genome GAAAATAAAGACACTG-GGGGAGGATGACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttaatctacccaagggtggggaagctggtcaaaccttcctttaattcaagTAAAGTGAAAACTCTGCGGAGAAGACGACCCCTGGCTGGACGATACTGCAGCATGGATAGAGAGGAGC------CTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgtactgacacaaggttcttcaagatcaccgtctacacgtcaatttaccca Alignment from GeneWise --GACCCCTGGCTGGATGATACTGCAGCCTGGATAGAGAGGAGCCGGCAGCTACAGAAAGAGAAGGACCTGGCAGAGAAGCGG ttaatctacccaagggtggggaagctggtcaaaccttcctttaattcaagtaaagtgaaaactctgcggagaagACGACCCCTGGCTGGACGATACTGCAGCATGGATAGAGAGGAGC------CTCCAGAAAGAGAAGGATCTGGCAGAGAAGAGGgtactgacacaaggttcttcaagatcaccgtctacacgtcaatttaccca #### Sec31b_ID9030_22 --> 0 - 0 Original Alignment CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAA-TGCAGCCTGCAG tggttagttgtttagatggttgtccctgtgctatcccctctttctcccagCTGCCTGAGGCATTCATGACTCCAGCACCAACTACAGCCCCACTTAGAAGCCCTGGGCCGGACTCACAACAGGCCCTGCTATCAAAACCCCTAGTTTCCAGTGCAACCTTACCTCCTCCTGGAGCTCCAAGAGAACTGCAGCTTGCAAgtacgagactgtctgcccctgccctgatgccacaaaaaggttggggttac Alignment from CESAR CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAA-TGCAGCCTGCAG tggttagttgtttagatggttgtccctgtgctatcccctctttctcccagCTGCCTGAGGCATTCATGACTCCAGCACCAACTACAGCCCCACTTAGAAGCCCTGGGCCGGACTCACAACAGGCCCTGCTATCAAAACCCCTAGTTTCCAGTGCAACCTTACCTCCTCCTGGAGCTCCAAGAGAACTGCAGCTTGCAAgtacgagactgtctgcccctgccctgatgccacaaaaaggttggggttac Alignment from Spaln_aa2Genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAATGCAGCCTG tggttagttgtttagatggttgtccctgtgctatcccctctttctcccagCTGCCTGAGGCATTCATGACTCCAGCACCAACTACAGCCCCACTTAGAAGCCCTGGGCCGGACTCACAACAGGCCCTGCTATCAAAACCCCTAGTTTCCAGTGCAACCTTACCTCCTCCTGGAGCTCCAAGAGAACTGCAGCTTgcaagtacgagactgtctgcccctgccctgatgccacaaaaaggttggggttac Alignment from Spaln_nt2Genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAA-TGCAGCCTGCAG tggttagttgtttagatggttgtccctgtgctatcccctctttctcccagCTGCCTGAGGCATTCATGACTCCAGCACCAACTACAGCCCCACTTAGAAGCCCTGGGCCGGACTCACAACAGGCCCTGCTATCAAAACCCCTAGTTTCCAGTGCAACCTTACCTCCTCCTGGAGCTCCAAGAGAACTGCAGCTTGCAAgtacgagactgtctgcccctgccctgatgccacaaaaaggttggggttac Alignment from Pairagon CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAA-TGCAGCCTGCAG tggttagttgtttagatggttgtccctgtgctatcccctctttctcccagCTGCCTGAGGCATTCATGACTCCAGCACCAACTACAGCCCCACTTAGAAGCCCTGGGCCGGACTCACAACAGGCCCTGCTATCAAAACCCCTAGTTTCCAGTGCAACCTTACCTCCTCCTGGAGCTCCAAGAGAACTGCAGCTTGCAAgtacgagactgtctgcccctgccctgatgccacaaaaaggttggggttac Alignment from Exonerate_protein2genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAA-TGCAGCCTGCAG tggttagttgtttagatggttgtccctgtgctatcccctctttctcccagCTGCCTGAGGCATTCATGACTCCAGCACCAACTACAGCCCCACTTAGAAGCCCTGGGCCGGACTCACAACAGGCCCTGCTATCAAAACCCCTAGTTTCCAGTGCAACCTTACCTCCTCCTGGAGCTCCAAGAGAACTGCAGCTTGCAAgtacgagactgtctgcccctgccctgatgccacaaaaaggttggggttac Alignment from Exonerate_coding2genome CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGAGAA-TGCAGCCTGCAG tggttagttgtttagatggttgtccctgtgctatcccctctttctcccagCTGCCTGAGGCATTCATGACTCCAGCACCAACTACAGCCCCACTTAGAAGCCCTGGGCCGGACTCACAACAGGCCCTGCTATCAAAACCCCTAGTTTCCAGTGCAACCTTACCTCCTCCTGGAGCTCCAAGAGAACTGCAGCTTGCAAgtacgagactgtctgcccctgccctgatgccacaaaaaggttggggttac Alignment from GeneWise CTGCCTGAGACATTCATGCCTCCAGCACCAATTACAGCTCCGCTTAGGAGCCTTGGCCCTGAGCCACAACAGGCCCTGCTACCTCAGCCCCTAGTCTCCAGTGCGACCCTGCCTCCTCCTGGAGCCCCAAGA-GAATGCAGCCTGCAG tggttagttgtttagatggttgtccctgtgctatcccctctttctcccagCTGCCTGAGGCATTCATGACTCCAGCACCAACTACAGCCCCACTTAGAAGCCCTGGGCCGGACTCACAACAGGCCCTGCTATCAAAACCCCTAGTTTCCAGTGCAACCTTACCTCCTCCTGGAGCTCCAAGAGAACTGCAGCTTGCAAgtacgagactgtctgcccctgccctgatgccacaaaaaggttggggttac #### Sec31b_ID9031_21 --> 2 - 0 Original Alignment gaCCCCAGGACTCCTGGAAAGTTTCTCCA-GCCTCCCAGGGAAACCTCCAAAGGAAAAAG agattgttaaagttgttaatgcctagaataatgggttcacctctcaccaggaCCCCAAGACTCATGGAAAGTCTCCCCTCGCCTCCCAGGGAAACCTTCAAAGGAAGAAAgtaagtgccattccataaccattaacctattccaaccccatcttcttaca Alignment from CESAR gaCCCCAGGACTCCTGGAAAGTTTCTCCA-GCCTCCCAGGGAAACCTCCAAAGGAAAAAG agattgttaaagttgttaatgcctagaataatgggttcacctctcaccaggaCCCCAAGACTCATGGAAAGTCTCCCCTCGCCTCCCAGGGAAACCTTCAAAGGAAGAAAgtaagtgccattccataaccattaacctattccaaccccatcttcttaca Alignment from Spaln_aa2Genome GACCCCAGGACTCCTGGAAAGTTTCTCCA-GCCTCCCAGGGAAACCTCCAAAGGAAAAAG agattgttaaagttgttaatgcctagaataatgggttcacctctcaccagGACCCCAAGACTCATGGAAAGTCTCCCCTcGCCTCCCAGGGAAACCTTCAAAGGAAGAAAgtaagtgccattccataaccattaacctattccaaccccatcttcttaca Alignment from Spaln_nt2Genome GACCCCAGGACTCCTGGAAAGTTTCTCCA-GCCTCCCAGGGAAACCTCCAAAGGAAAAAG agattgttaaagttgttaatgcctagaataatgggttcacctctcaccagGACCCCAAGACTCATGGAAAGTCTCCCCTCGCCTCCCAGGGAAACCTTCAAAGGAAGAAAgtaagtgccattccataaccattaacctattccaaccccatcttcttaca Alignment from Pairagon GACCCCAGGACTCCTGGAAAGTTTCTCC-AGCCTCCCAGGGAAACCTCCAAAGGAAAAAG agattgttaaagttgttaatgcctagaataatgggttcacctctcaccagGACCCCAAGACTCATGGAAAGTCTCCCCTCGCCTCCCAGGGAAACCTTCAAAGGAAGAAAgtaagtgccattccataaccattaacctattccaaccccatcttcttaca Alignment from Exonerate_protein2genome GACCCCAGGACTCCTGGAAAGTTTCTCCA-GCCTCCCAGGGAAACCTCCAAAGGAAAAAG agattgttaaagttgttaatgcctagaataatgggttcacctctcaccagGACCCCAAGACTCATGGAAAGTCTCCCCTCGCCTCCCAGGGAAACCTTCAAAGGAAGAAAgtaagtgccattccataaccattaacctattccaaccccatcttcttaca Alignment from Exonerate_coding2genome GACCCCAGGACTCCTGGAAAGTTTCTCCA-GCCTCCCAGGGAAACCTCCAAAGGAAAAAG agattgttaaagttgttaatgcctagaataatgggttcacctctcaccagGACCCCAAGACTCATGGAAAGTCTCCCCTCGCCTCCCAGGGAAACCTTCAAAGGAAGAAAgtaagtgccattccataaccattaacctattccaaccccatcttcttaca Alignment from GeneWise GACCCCAGGACTCCTGGAAAGTTTCTCCA-GCCTCCCAGGGAAACCTCCAAAGGAAAAAG agattgttaaagttgttaatgcctagaataatgggttcacctctcaccagGACCCCAAGACTCATGGAAAGTCTCCCCTCGCCTCCCAGGGAAACCTTCAAAGGAAGAAAgtaagtgccattccataaccattaacctattccaaccccatcttcttaca #### Sec31b_ID9047_5 --> 0 - 0 Original Alignment AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTC-AGCAGCCACAGCAGCAGG tcttggtgggacaatatggacagtatcctggctccttcctccatcggcagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCCTGTAGTCACAGTAGTAGGgtaagaaatggttgagcaaatacagtaatcagccgtcaaagttacagaaa Alignment from CESAR AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTC-AGCAGCCACAGCAGCAGG tcttggtgggacaatatggacagtatcctggctccttcctccatcggcagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCCTGTAGTCACAGTAGTAGGgtaagaaatggttgagcaaatacagtaatcagccgtcaaagttacagaaa Alignment from Spaln_aa2Genome AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAA tcttggtgggacaatatggacagtatcctggctccttcctccatcggcagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGgtcctgtagtcacagtagtagggtaagaaatggttgagcaaatacagtaatcagccgtcaaagttacagaaa Alignment from Spaln_nt2Genome AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCA-GCAGCCACAGCAGCAGG tcttggtgggacaatatggacagtatcctggctccttcctccatcggcagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCCTGTAGTCACAGTAGTAGGgtaagaaatggttgagcaaatacagtaatcagccgtcaaagttacagaaa Alignment from Pairagon AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTCA-GCAGCCACAGCAGCAGG tcttggtgggacaatatggacagtatcctggctccttcctccatcggcagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCCTGTAGTCACAGTAGTAGGgtaagaaatggttgagcaaatacagtaatcagccgtcaaagttacagaaa Alignment from Exonerate_protein2genome AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTC-AGCAGCCACAGCAGCAGG tcttggtgggacaatatggacagtatcctggctccttcctccatcggcagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCCTGTAGTCACAGTAGTAGGgtaagaaatggttgagcaaatacagtaatcagccgtcaaagttacagaaa Alignment from Exonerate_coding2genome AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTC-AGCAGCCACAGCAGCAGG tcttggtgggacaatatggacagtatcctggctccttcctccatcggcagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCCTGTAGTCACAGTAGTAGGgtaagaaatggttgagcaaatacagtaatcagccgtcaaagttacagaaa Alignment from GeneWise AACCCCCCAGAGGACATCAAGGCATTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCCGCTCACCCCAGCGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAGCCCATCATTAAAGTC-AGCAGCCACAGCAGCAGG tcttggtgggacaatatggacagtatcctggctccttcctccatcggcagAACCCCCCAGAGGATATCAAGGTGTTGTCTTGGAACCTCCAAGTCCAGCACATCCTGGCTTCTGCTCACCCCAGTGGCAAGGCGGTGGTGTGGGATCTCAGAAAGAATGAACCCATCATAAAGGTCCTGTAGTCACAGTAGTAGGgtaagaaatggttgagcaaatacagtaatcagccgtcaaagttacagaaa #### Sema4g_ID9244_2 --> 2 - 0 Original Alignment agCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAG-AACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gcattagtaaagtatttacctgctggctcagcaacatctccctgtcctagagGTATCACAAGTGCAACACTTTAGGGGGCAGGCCCAACAATTATTCAACATTGCTGTTGGAGGAGGCTTCTGAAAAGCTGCTGGCAGGGGCTCGAGGTCCATTGTTCTCCCTCAGTGCACGTGAAATCAGAGAGAGGACACATAAAGAGgtaagacactgatgtttggtttacaggaccccacgattaacttctggcct Alignment from CESAR agCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAG-AACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gcattagtaaagtatttacctgctggctcagcaacatctccctgtcctagagGTATCACAAGTGCAACACTTTAGGGGGCAGGCCCAACAATTATTCAACATTGCTGTTGGAGGAGGCTTCTGAAAAGCTGCTGGCAGGGGCTCGAGGTCCATTGTTCTCCCTCAGTGCACGTGAAATCAGAGAGAGGACACATAAAGAGgtaagacactgatgtttggtttacaggaccccacgattaacttctggcct Alignment from Spaln_aa2Genome AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAG-AACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gcattagtaaagtatttacctgctggctcagcaacatctccctgtcctagAGGTATCACAAGTGCAACACTTTAGGGGGCAGGCCCAAcAATTATTCAACATTGCTGTTGGAGGAGGCTTCTGAAAAGCTGCTGGCAGGGGCTCGAGGTCCATTGTTCTCCCTCAGTGCACGTGAAATCAGAGAGAGGACACATAAAGAGgtaagacactgatgtttggtttacaggaccccacgattaacttctggcct Alignment from Spaln_nt2Genome AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAG-AACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gcattagtaaagtatttacctgctggctcagcaacatctccctgtcctagAGGTATCACAAGTGCAACACTTTAGGGGGCAGGCCCAACAATTATTCAACATTGCTGTTGGAGGAGGCTTCTGAAAAGCTGCTGGCAGGGGCTCGAGGTCCATTGTTCTCCCTCAGTGCACGTGAAATCAGAGAGAGGACACATAAAGAGgtaagacactgatgtttggtttacaggaccccacgattaacttctggcct Alignment from Pairagon AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAG-AACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gcattagtaaagtatttacctgctggctcagcaacatctccctgtcctagAGGTATCACAAGTGCAACACTTTAGGGGGCAGGCCCAACAATTATTCAACATTGCTGTTGGAGGAGGCTTCTGAAAAGCTGCTGGCAGGGGCTCGAGGTCCATTGTTCTCCCTCAGTGCACGTGAAATCAGAGAGAGGACACATAAAGAGgtaagacactgatgtttggtttacaggaccccacgattaacttctggcct Alignment from Exonerate_protein2genome AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAG-AACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gcattagtaaagtatttacctgctggctcagcaacatctccctgtcctagAGGTATCACAAGTGCAACACTTTAGGGGGCAGGCCCAACAATTATTCAACATTGCTGTTGGAGGAGGCTTCTGAAAAGCTGCTGGCAGGGGCTCGAGGTCCATTGTTCTCCCTCAGTGCACGTGAAATCAGAGAGAGGACACATAAAGAGgtaagacactgatgtttggtttacaggaccccacgattaacttctggcct Alignment from Exonerate_coding2genome AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAG-AACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gcattagtaaagtatttacctgctggctcagcaacatctccctgtcctagAGGTATCACAAGTGCAACACTTTAGGGGGCAGGCCCAACAATTATTCAACATTGCTGTTGGAGGAGGCTTCTGAAAAGCTGCTGGCAGGGGCTCGAGGTCCATTGTTCTCCCTCAGTGCACGTGAAATCAGAGAGAGGACACATAAAGAGgtaagacactgatgtttggtttacaggaccccacgattaacttctggcct Alignment from GeneWise AGCTCTCCCAGATTCGGCACTTCAAGGGCCAA-ACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG gcattagtaaagtatttacctgctggctcagcaacatctccctgtcctagAGGTATCACAAGTGCAACACTTTAGGGGGCAGGCCCAACAATTATTCAACATTGCTGTTGGAGGAGGCTTCTGAAAAGCTGCTGGCAGGGGCTCGAGGTCCATTGTTCTCCCTCAGTGCACGTGAAATCAGAGAGAGGACACATAAAGAGgtaagacactgatgtttggtttacaggaccccacgattaacttctggcct #### Sema4g_ID9248_6 --> 2 - 1 Original Alignment atGGAGGCCTCTACACAGCCACCCGGTATGAATTC-CGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATg ttttcctagtagtgcatgccctatctccgttttcttgtgatttgttcaagatGGCGGCCTCTATACAGCCACCCGGTATGAATTCCCGGAGCATTCCTGATATTCGACGGAGCCGCCACCCACACTCTCTGAGAACCGAGGAGGCACCGATGCACTGGCTCAATggtactcatagagtgctttcgaggggttggagaagggggcagctctgttgt Alignment from CESAR atGGAGGCCTCTACACAGCCACCCGGTATGAATTC-CGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATg ttttcctagtagtgcatgccctatctccgttttcttgtgatttgttcaagatGGCGGCCTCTATACAGCCACCCGGTATGAATTCCCGGAGCATTCCTGATATTCGACGGAGCCGCCACCCACACTCTCTGAGAACCGAGGAGGCACCGATGCACTGGCTCAATggtactcatagagtgctttcgaggggttggagaagggggcagctctgttgt Alignment from Spaln_aa2Genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTC-CGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctagtagtgcatgccctatctccgttttcttgtgatttgttcaagATGGCGGCCTCTATACAGCCACCCGGTATGAATTCcCGGAGCATTCCTGATATTCGACGGAGCCGCCACCCACACTCTCTGAGAACCGAGGAGGCACCGATGCACTGGCTCAATGgtactcatagagtgctttcgaggggttggagaagggggcagctctgttgt Alignment from Spaln_nt2Genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATT-CCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctagtagtgcatgccctatctccgttttcttgtgatttgttcaagATGGCGGCCTCTATACAGCCACCCGGTATGAATTCCCGGAGCATTCCTGATATTCGACGGAGCCGCCACCCACACTCTCTGAGAACCGAGGAGGCACCGATGCACTGGCTCAATGgtactcatagagtgctttcgaggggttggagaagggggcagctctgttgt Alignment from Pairagon ATGGAGGCCTCTACACAGCCACCCGGTATGAATT-CCGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctagtagtgcatgccctatctccgttttcttgtgatttgttcaagATGGCGGCCTCTATACAGCCACCCGGTATGAATTCCCGGAGCATTCCTGATATTCGACGGAGCCGCCACCCACACTCTCTGAGAACCGAGGAGGCACCGATGCACTGGCTCAATGgtactcatagagtgctttcgaggggttggagaagggggcagctctgttgt Alignment from Exonerate_protein2genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTC-CGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctagtagtgcatgccctatctccgttttcttgtgatttgttcaagATGGCGGCCTCTATACAGCCACCCGGTATGAATTCCCGGAGCATTCCTGATATTCGACGGAGCCGCCACCCACACTCTCTGAGAACCGAGGAGGCACCGATGCACTGGCTCAATGgtactcatagagtgctttcgaggggttggagaagggggcagctctgttgt Alignment from Exonerate_coding2genome ATGGAGGCCTCTACACAGCCACCCGGTATGAATTC-CGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctagtagtgcatgccctatctccgttttcttgtgatttgttcaagATGGCGGCCTCTATACAGCCACCCGGTATGAATTCCCGGAGCATTCCTGATATTCGACGGAGCCGCCACCCACACTCTCTGAGAACCGAGGAGGCACCGATGCACTGGCTCAATGgtactcatagagtgctttcgaggggttggagaagggggcagctctgttgt Alignment from GeneWise ATGGAGGCCTCTACACAGCCACCCGGTATGAATTC-CGGAGCATTCCTGATATCCGCCGGAGCCGCCACCCACACTCTCTGAGAACTGAGGAGGCACCCATGCACTGGCTCAATG ttttcctagtagtgcatgccctatctccgttttcttgtgatttgttcaagATGGCGGCCTCTATACAGCCACCCGGTATGAATTCCCGGAGCATTCCTGATATTCGACGGAGCCGCCACCCACACTCTCTGAGAACCGAGGAGGCACCGATGCACTGGCTCAATGgtactcatagagtgctttcgaggggttggagaagggggcagctctgttgt #### Sema4g_ID9249_7 --> 2 - 0 Original Alignment atGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAG-GAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcatattggctcatttcataaatcaatgcagtgtccctctgtggccctagatGCAGAGTTTGTGTTCTCTGTGCTGGTGCGACAGAGTGAGACAAGTACTGTTGGTGGTGATGACAGGATTTATTTCTTCTTCAAGGAGCATGAGCGAGGGCTCCAGCAGTTTCACACAAAGTTGCAGCAGCCACCGGGTAGCTAGAGCACCTCGAGTCTGCAAGgtaagtctgatgcactactagaccggggtaatccaaaaaggccttcagtc Alignment from CESAR atGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAG-GAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcatattggctcatttcataaatcaatgcagtgtccctctgtggccctagatGCAGAGTTTGTGTTCTCTGTGCTGGTGCGACAGAGTGAGACAAGTACTGTTGGTGGTGATGACAGGATTTATTTCTTCTTCAAGGAGCATGAGCGAGGGCTCCAGCAGTTTCACACAAAGTTGCAGCAGCCACCGGGTAGCTAGAGCACCTCGAGTCTGCAAGgtaagtctgatgcactactagaccggggtaatccaaaaaggccttcagtc Alignment from Spaln_aa2Genome ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAG-GAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcatattggctcatttcataaatcaatgcagtgtccctctgtggccctagATGCAGAGTTTGTGTTCTCTGTGCTGGTGCGACAGAGTGAGACAAGTACTGTTGGTGGTGATGACAGGATTTATTTCTTCTTCAAGGAGCATGAGcGAGGGCTCCAGCAGTTTCACACAAAGTTGCAGCAGCCACCGGGTAGCTAGAGCACCTCGAGTCTGCAAGgtaagtctgatgcactactagaccggggtaatccaaaaaggccttcagtc Alignment from Spaln_nt2Genome ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAG-GAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcatattggctcatttcataaatcaatgcagtgtccctctgtggccctagATGCAGAGTTTGTGTTCTCTGTGCTGGTGCGACAGAGTGAGACAAGTACTGTTGGTGGTGATGACAGGATTTATTTCTTCTTCAAGGAGCATGAGCGAGGGCTCCAGCAGTTTCACACAAAGTTGCAGCAGCCACCGGGTAGCTAGAGCACCTCGAGTCTGCAAGgtaagtctgatgcactactagaccggggtaatccaaaaaggccttcagtc Alignment from Pairagon ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAG-GAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcatattggctcatttcataaatcaatgcagtgtccctctgtggccctagATGCAGAGTTTGTGTTCTCTGTGCTGGTGCGACAGAGTGAGACAAGTACTGTTGGTGGTGATGACAGGATTTATTTCTTCTTCAAGGAGCATGAGCGAGGGCTCCAGCAGTTTCACACAAAGTTGCAGCAGCCACCGGGTAGCTAGAGCACCTCGAGTCTGCAAGgtaagtctgatgcactactagaccggggtaatccaaaaaggccttcagtc Alignment from Exonerate_protein2genome ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAG-GAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcatattggctcatttcataaatcaatgcagtgtccctctgtggccctagATGCAGAGTTTGTGTTCTCTGTGCTGGTGCGACAGAGTGAGACAAGTACTGTTGGTGGTGATGACAGGATTTATTTCTTCTTCAAGGAGCATGAGCGAGGGCTCCAGCAGTTTCACACAAAGTTGCAGCAGCCACCGGGTAGCTAGAGCACCTCGAGTCTGCAAGgtaagtctgatgcactactagaccggggtaatccaaaaaggccttcagtc Alignment from Exonerate_coding2genome ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAG-GAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcatattggctcatttcataaatcaatgcagtgtccctctgtggccctagATGCAGAGTTTGTGTTCTCTGTGCTGGTGCGACAGAGTGAGACAAGTACTGTTGGTGGTGATGACAGGATTTATTTCTTCTTCAAGGAGCATGAGCGAGGGCTCCAGCAGTTTCACACAAAGTTGCAGCAGCCACCGGGTAGCTAGAGCACCTCGAGTCTGCAAGgtaagtctgatgcactactagaccggggtaatccaaaaaggccttcagtc Alignment from GeneWise ATGCTGAGTTTGTGTTCTCTGTGCTGGTGCGGGAGAGCAAGACAAGCGCAGTGGGTGATGATGACAAGATTTATTTCTTCTTCATGGAGCGTGAG-GAAGGCTCCAGCAGCTTCACACAGAGTCGCAGCAGCCACCGTGTGGCTAGAGTAGCCCGTGTGTGCAAG tcatattggctcatttcataaatcaatgcagtgtccctctgtggccctagATGCAGAGTTTGTGTTCTCTGTGCTGGTGCGACAGAGTGAGACAAGTACTGTTGGTGGTGATGACAGGATTTATTTCTTCTTCAAGGAGCATGAGCGAGGGCTCCAGCAGTTTCACACAAAGTTGCAGCAGCCACCGGGTAGCTAGAGCACCTCGAGTCTGCAAGgtaagtctgatgcactactagaccggggtaatccaaaaaggccttcagtc #### Sema4g_ID9252_10 --> 0 - 1 Original Alignment TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCAT---CCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCC-TTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAg gtcatgtggaagtatagcagcagagtccagcatattctcctttcatacagTGTATCTCTGATTCTCTGCGTAGCCAAGGATACAACTCATCCCAAGACTTGCCATCCCTTGTCCTTGACTTTGTGAAGCTGCATCCACCACTGATGGCTCAGCCTGTGGTGCCCACACGGGGACAGCCCCCTGCTGCTGAAGCGCAATGTACGCTACACACATGTCACAGGTACACATGTCAGTACACCCGCAGGACCTACCTATGAGTTGCTCTTTCTAGGCACAggtaggtcatacccaccctggacatgttggcctccaccttagctgggatac Alignment from CESAR TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCC---CTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGG-CCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAg gtcatgtggaagtatagcagcagagtccagcatattctcctttcatacagTGTATCTCTGATTCTCTGCGTAGCCAAGGATACAACTCATCCCAAGACTTGCCATCCCTTGTCCTTGACTTTGTGAAGCTGCATCCACCACTGATGGCTCAGCCTGTGGTGCCCACACGGGGACAGCCCCCTGCTGCTGAAGCGCAATGTACGCTACACACATGTCACAGGTACACATGTCAGTACACCCGCAGGACCTACCTATGAGTTGCTCTTTCTAGGCACAggtaggtcatacccaccctggacatgttggcctccaccttagctgggatac Alignment from Spaln_aa2Genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCAT---CCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGG-CCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG gtcatgtggaagtatagcagcagagtccagcatattctcctttcatacagTGTATCTCTGATTCTCTGCGTAGCCAAGGATACAACTCATCCCAAGACTTGCCATCCCTTGTCCTTGACTTTGTGAAGCTGCATCCACCACTGATGGCTCAGCCTGTGGTGCCCACACGGGGACAGcCCCCTGCTGCTGAAGCGCAATGTACGCTACACACATGTCACAGGTACACATGTCAGTACACCCGCAGGACCTACCTATGAGTTGCTCTTTCTAGGCACAGgtaggtcatacccaccctggacatgttggcctccaccttagctgggatac Alignment from Spaln_nt2Genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCATCCCC---TGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGGCCCT-TGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG gtcatgtggaagtatagcagcagagtccagcatattctcctttcatacagTGTATCTCTGATTCTCTGCGTAGCCAAGGATACAACTCATCCCAAGACTTGCCATCCCTTGTCCTTGACTTTGTGAAGCTGCATCCACCACTGATGGCTCAGCCTGTGGTGCCCACACGGGGACAGCCCCCTGCTGCTGAAGCGCAATGTACGCTACACACATGTCACAGGTACACATGTCAGTACACCCGCAGGACCTACCTATGAGTTGCTCTTTCTAGGCACAGgtaggtcatacccaccctggacatgttggcctccaccttagctgggatac Alignment from Pairagon TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCAT---CCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGG-CCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG gtcatgtggaagtatagcagcagagtccagcatattctcctttcatacagTGTATCTCTGATTCTCTGCGTAGCCAAGGATACAACTCATCCCAAGACTTGCCATCCCTTGTCCTTGACTTTGTGAAGCTGCATCCACCACTGATGGCTCAGCCTGTGGTGCCCACACGGGGACAGCCCCCTGCTGCTGAAGCGCAATGTACGCTACACACATGTCACAGGTACACATGTCAGTACACCCGCAGGACCTACCTATGAGTTGCTCTTTCTAGGCACAGgtaggtcatacccaccctggacatgttggcctccaccttagctgggatac Alignment from Exonerate_protein2genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCAT---CCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGG-CCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG gtcatgtggaagtatagcagcagagtccagcatattctcctttcatacagTGTATCTCTGATTCTCTGCGTAGCCAAGGATACAACTCATCCCAAGACTTGCCATCCCTTGTCCTTGACTTTGTGAAGCTGCATCCACCACTGATGGCTCAGCCTGTGGTGCCCACACGGGGACAGCCCCCTGCTGCTGAAGCGCAATGTACGCTACACACATGTCACAGGTACACATGTCAGTACACCCGCAGGACCTACCTATGAGTTGCTCTTTCTAGGCACAGgtaggtcatacccaccctggacatgttggcctccaccttagctgggatac Alignment from Exonerate_coding2genome TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCAT---CCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGGCGG-CCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG gtcatgtggaagtatagcagcagagtccagcatattctcctttcatacagTGTATCTCTGATTCTCTGCGTAGCCAAGGATACAACTCATCCCAAGACTTGCCATCCCTTGTCCTTGACTTTGTGAAGCTGCATCCACCACTGATGGCTCAGCCTGTGGTGCCCACACGGGGACAGCCCCCTGCTGCTGAAGCGCAATGTACGCTACACACATGTCACAGGTACACATGTCAGTACACCCGCAGGACCTACCTATGAGTTGCTCTTTCTAGGCACAGgtaggtcatacccaccctggacatgttggcctccaccttagctgggatac Alignment from GeneWise TGCATCACAGATTCATTGCGCAGCCGAGGCTACAACTCATCCCAAGACTTGCCATCCCTGGTTCTGGACTTTGTGAAGTTGCAT---CCCCTGATGGCTCGGCCTGTGGTGCCCACACGTGGG-CGGCCCTTGCTGCTGAAGCGCAATGTACGCTACACACATCTCACAGGAACACACGTCAGCACACCTGCTGGACCCACCTATGACCTGCTCTTTCTGGGCACAG gtcatgtggaagtatagcagcagagtccagcatattctcctttcatacagTGTATCTCTGATTCTCTGCGTAGCCAAGGATACAACTCATCCCAAGACTTGCCATCCCTTGTCCTTGACTTTGTGAAGCTGCATCCACCACTGATGGCTCAGCCTGTGGTGCCCACACGGGGACAGCCCCCTGCTGCTGAAGCGCAATGTACGCTACACACATGTCACAGGTACACATGTCAGTACACCCGCAGGACCTACCTATGAGTTGCTCTTTCTAGGCACAGgtaggtcatacccaccctggacatgttggcctccaccttagctgggatac #### Sema4g_ID9253_11 --> 2 - 0 Original Alignment ctGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCC-CAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccatcagacgcccagttaaagagttaacccttttcttctctcttagcaGATGGCTGGATTCACAAAGCTGTAGTCCAGGGCTCTGGAATGCACATCATTGAAGAGATACAAGTGCTTAGAGAGCCCCCAGTCAGTAGACAATCTAGTGATCTCACCAATGCAAgtaagctagtgttactatggtgagagtcaccagttattttcccacaccta Alignment from CESAR ctGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAG-CCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccatcagacgcccagttaaagagttaacccttttcttctctcttagcaGATGGCTGGATTCACAAAGCTGTAGTCCAGGGCTCTGGAATGCACATCATTGAAGAGATACAAGTGCTTAGAGAGCCCCCAGTCAGTAGACAATCTAGTGATCTCACCAATGCAAgtaagctagtgttactatggtgagagtcaccagttattttcccacaccta Alignment from Spaln_aa2Genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAG-CCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccatcagacgcccagttaaagagttaacccttttcttctctcttagCAGATGGCTGGATTCACAAAGCTGTAGTCCAGGGCTCTGGAATGCACATCATTGAAGAGATACAAGTGCTTAGAGAGcCCCCAGTCAGTAGACAATCTAGTGATCTCACCAATGCAAgtaagctagtgttactatggtgagagtcaccagttattttcccacaccta Alignment from Spaln_nt2Genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAGCCC-CAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccatcagacgcccagttaaagagttaacccttttcttctctcttagCAGATGGCTGGATTCACAAAGCTGTAGTCCAGGGCTCTGGAATGCACATCATTGAAGAGATACAAGTGCTTAGAGAGCCCCCAGTCAGTAGACAATCTAGTGATCTCACCAATGCAAgtaagctagtgttactatggtgagagtcaccagttattttcccacaccta Alignment from Pairagon CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAG-CCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccatcagacgcccagttaaagagttaacccttttcttctctcttagCAGATGGCTGGATTCACAAAGCTGTAGTCCAGGGCTCTGGAATGCACATCATTGAAGAGATACAAGTGCTTAGAGAGCCCCCAGTCAGTAGACAATCTAGTGATCTCACCAATGCAAgtaagctagtgttactatggtgagagtcaccagttattttcccacaccta Alignment from Exonerate_protein2genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAG-CCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccatcagacgcccagttaaagagttaacccttttcttctctcttagCAGATGGCTGGATTCACAAAGCTGTAGTCCAGGGCTCTGGAATGCACATCATTGAAGAGATACAAGTGCTTAGAGAGCCCCCAGTCAGTAGACAATCTAGTGATCTCACCAATGCAAgtaagctagtgttactatggtgagagtcaccagttattttcccacaccta Alignment from Exonerate_coding2genome CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGGGAG-CCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccatcagacgcccagttaaagagttaacccttttcttctctcttagCAGATGGCTGGATTCACAAAGCTGTAGTCCAGGGCTCTGGAATGCACATCATTGAAGAGATACAAGTGCTTAGAGAGCCCCCAGTCAGTAGACAATCTAGTGATCTCACCAATGCAAgtaagctagtgttactatggtgagagtcaccagttattttcccacaccta Alignment from GeneWise CTGATGGCTGGATCCACAAGGCCGTAGTCCTGGGCTCTGGGATGCACATAATTGAAGAGATACAAGTGTTCAGG-GAGCCCCAGTCTGTGGACAATCTAGTTATCTCACCAATGCAG gcacccatcagacgcccagttaaagagttaacccttttcttctctcttagCAGATGGCTGGATTCACAAAGCTGTAGTCCAGGGCTCTGGAATGCACATCATTGAAGAGATACAAGTGCTTAGAGAGCCCCCAGTCAGTAGACAATCTAGTGATCTCACCAATGCAAgtaagctagtgttactatggtgagagtcaccagttattttcccacaccta #### Sema4g_ID9254_12 --> 0 - 2 Original Alignment CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGG-GACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACag tgggatggctggaaaaacgcaacttgttcctacattcctttccattctagCATAGCCTATACGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTTTCCAGCTGCTCACGCTACCAGTCTTGTTATGACTGCATCCTAGCACGACGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACAGTAGCAAACaggtgagtagacaggatataatagtgcttgttgaggaggaaaccctgcttgc Alignment from CESAR CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGG-GACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACag tgggatggctggaaaaacgcaacttgttcctacattcctttccattctagCATAGCCTATACGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTTTCCAGCTGCTCACGCTACCAGTCTTGTTATGACTGCATCCTAGCACGACGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACAGTAGCAAACaggtgagtagacaggatataatagtgcttgttgaggaggaaaccctgcttgc Alignment from Spaln_aa2Genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCC-TACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG tgggatggctggaaaaacgcaacttgttcctacattcctttccattctagCATAGCCTATACGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTTTCCAGCTGCTCACGCTACCAGTCTTGTTATGACTGCATCCTAGCACGACGACCCcTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACAGTAGCAAACAGgtgagtagacaggatataatagtgcttgttgaggaggaaaccctgcttgc Alignment from Spaln_nt2Genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGG-GACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG tgggatggctggaaaaacgcaacttgttcctacattcctttccattctagCATAGCCTATACGTGGGGGCTGCTAGTGGA---ATTCAGTTTCCTCTTTCCAGCTGCTCACGCTACCAGTCTTGTTATGACTGCATCCTAGCACGACGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACAGTAGCAAACAGgtgagtagacaggatataatagtgcttgttgaggaggaaaccctgcttgc Alignment from Pairagon CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGG-GACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG tgggatggctggaaaaacgcaacttgttcctacattcctttccattctagCATAGCCTATACGTGGGGGCTGCTAGTGGAA---TTCAGTTTCCTCTTTCCAGCTGCTCACGCTACCAGTCTTGTTATGACTGCATCCTAGCACGACGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACAGTAGCAAACAGgtgagtagacaggatataatagtgcttgttgaggaggaaaccctgcttgc Alignment from Exonerate_protein2genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGG-GACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG tgggatggctggaaaaacgcaacttgttcctacattcctttccattctagCATAGCCTATACGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTTTCCAGCTGCTCACGCTACCAGTCTTGTTATGACTGCATCCTAGCACGACGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACAGTAGCAAACAGgtgagtagacaggatataatagtgcttgttgaggaggaaaccctgcttgc Alignment from Exonerate_coding2genome CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGG-GACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG tgggatggctggaaaaacgcaacttgttcctacattcctttccattctagCATAGCCTATACGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTTTCCAGCTGCTCACGCTACCAGTCTTGTTATGACTGCATCCTAGCACGACGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACAGTAGCAAACAGgtgagtagacaggatataatagtgcttgttgaggaggaaaccctgcttgc Alignment from GeneWise CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCA-CGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG tgggatggctggaaaaacgcaacttgttcctacattcctttccattctagCATAGCCTATACGTGGGGGCTGCTAGTGGAATT---CAGTTTCCTCTTTCCAGCTGCTCACGCTACCAGTCTTGTTATGACTGCATCCTAGCACGACGACCCCTACTGTGGCTGGGACTCCAGCATCCATGTGTGCATGGTGGCCACCACAGTAGCAAACAGgtgagtagacaggatataatagtgcttgttgaggaggaaaccctgcttgc #### Sf1_ID1666_7 --> 0 - 2 Original Alignment ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGG-AAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATag agccaaactgccaagttttttgatgaggtgactttgcttgtacccttcagATCCGAAATATCCTAAAGCAAGGTATCGAAACCCCAGAAGGCCAGAATGATCTACAACAAGATGCAGCTTCGAGAGCTGGCTCACCTGAATGGCACTCTACGGGAGGAA---GCCcggtttgtggaatgttgaagaaactgcatagcaggtttaagttttactgaag Alignment from CESAR ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGG-AAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATag agccaaactgccaagttttttgatgaggtgactttgcttgtacccttcagATCCGAAATATCCTAAAGCAAGGTATCGAAACCCCAGAAGGCCAGAATGATCTACAACAAGATGCAGCTTCGAGAGCTGGCTCACCTGAATGGCACTCTACGGGAG---GAAGCCcggtttgtggaatgttgaagaaactgcatagcaggtttaagttttactgaag Alignment from Spaln_aa2Genome ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGG-AAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATAG agccaaactgccaagttttttgatgaggtgactttgcttgtacccttcagATCCGAAATATCCTAAAGCAAGGTATCGAAACCCCAGAAGGCCAGAATGATCTACAAcAAGATGCAGCTTCGAGAGCTGGCTCACCTGAATGGCACTCTACGGGAG---GAAGCCCGgtttgtggaatgttgaagaaactgcatagcaggtttaagttttactgaag Alignment from Spaln_nt2Genome ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGGAAA-ATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATAG agccaaactgccaagttttttgatgaggtgactttgcttgtacccttcagATCCGAAATATCCTAAAGCAAGGTATCGAAACCCCAGAAGGCCAGAATGATCTACAACAAGATGCAGCTTCGAGAGCTGGCTCACCTGAATGGCACTCTACGGGAGGAAG---CCCGgtttgtggaatgttgaagaaactgcatagcaggtttaagttttactgaag Alignment from Pairagon ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGG-AAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGA-------------------------------------------------------- agccaaactgccaagttttttgatgaggtgactttgcttgtacccttcagATCCGAAATATCCTAAAGCAAGGTATCGAAACCCCAGAAGGCCAGAATGATCTACAACAAGATGCAGCTTCGAGAGCTGGCTCACCTGAATGGCACTCTACGGGAGGAAGCCCGGTTTGTGGAATGTTGAAGAAACTGCATAGCAGGTTTAAGTTTTACTGAAG Alignment from Exonerate_protein2genome ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGG-AAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATAG agccaaactgccaagttttttgatgaggtgactttgcttgtacccttcagATCCGAAATATCCTAAAGCAAGGTATCGAAACCCCAGAAGGCCAGAATGATCTACAACAAGATGCAGCTTCGAGAGCTGGCTCACCTGAATGGCACTCTACGGGAG---GAAGCCCGgtttgtggaatgttgaagaaactgcatagcaggtttaagttttactgaag Alignment from Exonerate_coding2genome ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTACGG-AAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGATAATAG agccaaactgccaagttttttgatgaggtgactttgcttgtacccttcagATCCGAAATATCCTAAAGCAAGGTATCGAAACCCCAGAAGGCCAGAATGATCTACAACAAGATGCAGCTTCGAGAGCTGGCTCACCTGAATGGCACTCTACGGGAG---GAAGCCCGgtttgtggaatgttgaagaaactgcatagcaggtttaagttttactgaag Alignment from GeneWise ATCAGAAACATCCTGAAGCAGGGTATTGAGACCCCAGAGGACCAGAACGATCTA-CGGAAAATGCAGCTTCGAGAGTTGGCTCGCTTGAATGGCACTCTACGGGAAGATGAT-- agccaaactgccaagttttttgatgaggtgactttgcttgtacccttcagATCCGAAATATCCTAAAGCAAGGTATCGAAACCCCAGAAGGCCAGAATGATCTACAACAAGATGCAGCTTCGAGAGCTGGCTCACCTGAATGGCACTCTACGGGAGGAAGCCCGgtttgtggaatgttgaagaaactgcatagcaggtttaagttttactgaag #### Sf3b2_ID898_20 --> 0 - 0 Original Alignment GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTG-GCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGAC---ATGGTGGCTGAGCATGCTGCTAAGCAGAAG ctgggatcaggccccgatctctaggaccaatgcatttttctgtgttacagGTTATGAGCCAAAAGGGGGCTGCCCCTGAGTTACAAGGTGTGGAAGTAGCACTGCGCACCTGAAGAATTGGACTTGGATTCCATGGCTACAATGCAGAAGTATGAAGAACATGTTCGGGAAAAACAGGCAAAAGTGGAGAAGGGAGATTTCAGTGATATGATGGTGGCTGAGCATGCTGCAAAGCATAAAgtactgatgattggtgtattcggcatgggggctattctctctagtgggaa Alignment from CESAR GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTG-GCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGAC---ATGGTGGCTGAGCATGCTGCTAAGCAGAAG ctgggatcaggccccgatctctaggaccaatgcatttttctgtgttacagGTTATGAGCCAAAAGGGGGCTGCCCCTGAGTTACAAGGTGTGGAAGTAGCACTGCGCACCTGAAGAATTGGACTTGGATTCCATGGCTACAATGCAGAAGTATGAAGAACATGTTCGGGAAAAACAGGCAAAAGTGGAGAAGGGAGATTTCAGTGATATGATGGTGGCTGAGCATGCTGCAAAGCATAAAgtactgatgattggtgtattcggcatgggggctattctctctagtgggaa Alignment from Spaln_aa2Genome GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTG-GCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGAC---ATGGTGGCTGAGCATGCTGCTAAGCAGAAG ctgggatcaggccccgatctctaggaccaatgcatttttctgtgttacagGTTATGAGCCAAAAGGGGGCTGCCCCTGAGTTACAAGGTGTGGAAGTAGCACTGcGCACCTGAAGAATTGGACTTGGATTCCATGGCTACAATGCAGAAGTATGAAGAACATGTTCGGGAAAAACAGGCAAAAGTGGAGAAGGGAGATTTCAGTGATATGATGGTGGCTGAGCATGCTGCAAAGCATAAAgtactgatgattggtgtattcggcatgggggctattctctctagtgggaa Alignment from Spaln_nt2Genome GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTG-GCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGACATGG---TGGCTGAGCATGCTGCTAAGCAGAAG ctgggatcaggccccgatctctaggaccaatgcatttttctgtgttacagGTTATGAGCCAAAAGGGGGCTGCCCCTGAGTTACAAGGTGTGGAAGTAGCACTGCGCACCTGAAGAATTGGACTTGGATTCCATGGCTACAATGCAGAAGTATGAAGAACATGTTCGGGAAAAACAGGCAAAAGTGGAGAAGGGAGATTTCAGTGATATGATGGTGGCTGAGCATGCTGCAAAGCATAAAgtactgatgattggtgtattcggcatgggggctattctctctagtgggaa Alignment from Pairagon GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTG-GCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGAC---ATGGTGGCTGAGCATGCTGCTAAGCAGAAG ctgggatcaggccccgatctctaggaccaatgcatttttctgtgttacagGTTATGAGCCAAAAGGGGGCTGCCCCTGAGTTACAAGGTGTGGAAGTAGCACTGCGCACCTGAAGAATTGGACTTGGATTCCATGGCTACAATGCAGAAGTATGAAGAACATGTTCGGGAAAAACAGGCAAAAGTGGAGAAGGGAGATTTCAGTGATATGATGGTGGCTGAGCATGCTGCAAAGCATAAAgtactgatgattggtgtattcggcatgggggctattctctctagtgggaa Alignment from Exonerate_protein2genome GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTG-GCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGAC---ATGGTGGCTGAGCATGCTGCTAAGCAGAAG ctgggatcaggccccgatctctaggaccaatgcatttttctgtgttacagGTTATGAGCCAAAAGGGGGCTGCCCCTGAGTTACAAGGTGTGGAAGTAGCACTGCGCACCTGAAGAATTGGACTTGGATTCCATGGCTACAATGCAGAAGTATGAAGAACATGTTCGGGAAAAACAGGCAAAAGTGGAGAAGGGAGATTTCAGTGATATGATGGTGGCTGAGCATGCTGCAAAGCATAAAgtactgatgattggtgtattcggcatgggggctattctctctagtgggaa Alignment from Exonerate_coding2genome ctgggatcaggccccgatctctaggaccaatgcatttttctgtgttacaggttatgagccaaaagggggctgcccctgagttacaaggtgtggaagtagcactgcgcacctgaagaattggacttggattccatggctacaatgcagaagtatgaagaacatgttcgggaaaaacaggcaaaagtggagaagggagatttcagtgatatgatggtggctgagcatgctgcaaagcataaagtactgatgattggtgtattcggcatgggggctattctctctagtgggaa Alignment from GeneWise GTTATGAGCCGGAAGGGCCCAGCCCCTGAATTGCAAGGTGTGGAAGTAGCGCTG-GCGCCTGAGGAATTGGAGTTGGACCCCATGGCCATGACGCAGAAGTACGAGGAGCACGTTCGGGAGCAGCAGGCACAAGTAGAGAAGGAAGACTTCAGCGAC---ATGGTGGCTGAGCATGCTGCTAAGCAGAAG ctgggatcaggccccgatctctaggaccaatgcatttttctgtgttacagGTTATGAGCCAAAAGGGGGCTGCCCCTGAGTTACAAGGTGTGGAAGTAGCACTGCGCACCTGAAGAATTGGACTTGGATTCCATGGCTACAATGCAGAAGTATGAAGAACATGTTCGGGAAAAACAGGCAAAAGTGGAGAAGGGAGATTTCAGTGATATGATGGTGGCTGAGCATGCTGCAAAGCATAAAgtactgatgattggtgtattcggcatgggggctattctctctagtgggaa #### Sf3b2_ID901_17 --> 0 - 2 Original Alignment ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCC-TCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACag gccagcttcagcaactccctgccatgaacttccaatggctttcctcacagACCAAAACGGAAGAGGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCCTCAGAGGAGGAGGAAGAGGAGGATAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACaggtgagtacagggctgtcccccttcagtcgcttacctggcactgctatttc Alignment from CESAR ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCC-TCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACag gccagcttcagcaactccctgccatgaacttccaatggctttcctcacagACCAAAACGGAAGAGGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCCTCAGAGGAGGAGGAAGAGGAGGATAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACaggtgagtacagggctgtcccccttcagtcgcttacctggcactgctatttc Alignment from Spaln_aa2Genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCC-TCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagcttcagcaactccctgccatgaacttccaatggctttcctcacagACCAAAACGGAAGAGGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCcTCAGAGGAGGAGGAAGAGGAGGATAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtgagtacagggctgtcccccttcagtcgcttacctggcactgctatttc Alignment from Spaln_nt2Genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAAT-CCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagcttcagcaactccctgccatgaacttccaatggctttcctcacagACCAAAACGGAAGAGGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCCTCAGAGGAGGAGGAAGAGGAGGATAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtgagtacagggctgtcccccttcagtcgcttacctggcactgctatttc Alignment from Pairagon ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAAT-CCTCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagcttcagcaactccctgccatgaacttccaatggctttcctcacagACCAAAACGGAAGAGGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCCTCAGAGGAGGAGGAAGAGGAGGATAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtgagtacagggctgtcccccttcagtcgcttacctggcactgctatttc Alignment from Exonerate_protein2genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCC-TCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagcttcagcaactccctgccatgaacttccaatggctttcctcacagACCAAAACGGAAGAGGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCCTCAGAGGAGGAGGAAGAGGAGGATAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtgagtacagggctgtcccccttcagtcgcttacctggcactgctatttc Alignment from Exonerate_coding2genome ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCC-TCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGAC gccagcttcagcaactccctgccatgaacttccaatggctttcctcacagACCAAAACGGAAGAGGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCCTCAGAGGAGGAGGAAGAGGAGGATAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACaggtgagtacagggctgtcccccttcagtcgcttacctggcactgctatttc Alignment from GeneWise ACCAAAACGGAAGAAGAAGAAATTGACCGGACCCCGTGGGGGGAACTGGAACCATCTGATGAAGAATCC-TCAGAAGAGGAGGAGGAGGAGGAAAGCGATGAAGACAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAG gccagcttcagcaactccctgccatgaacttccaatggctttcctcacagACCAAAACGGAAGAGGAGGAAATTGACCAAACCCCATGGGGGGAGCTGGAACCTTCTGATGAAGAATCCCTCAGAGGAGGAGGAAGAGGAGGATAGTGATGAAGATAAGCCAGATGAGACTGGCTTCATCACACCTGCAGACAGgtgagtacagggctgtcccccttcagtcgcttacctggcactgctatttc #### Sf3b2_ID908_10 --> 0 - 0 Original Alignment CTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAGAGCTCTGCAGTCCCCAAGAAGAAGGGCTTTGAGGAGGAGCACAAGGACAGTGAC-GATGACAGCAGTGATGATGAGCAG aagggggcaagcaaccatattctgaatgcttttcattctgtccaccttagCTAACAGATGATGTAAGGAAAGAAAAAGAAAAAGAGCCTGAGAAGCTTGACAAGATGGAAAGCCCTGCAGTCCCTAAGAAAAAGGGCTATGAAGAGGAGCGTAAGGAAAGTGATCGATGATAGCAGTGATGATGAACAAgtgagcgcccctatgtggcagtgagctgtagagggggggtttagtccaat Alignment from CESAR CTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAGAGCTCTGCAGTCCCCAAGAAGAAGGGCTTTGAGGAGGAGCACAAGGACAGTGAC-GATGACAGCAGTGATGATGAGCAG aagggggcaagcaaccatattctgaatgcttttcattctgtccaccttagCTAACAGATGATGTAAGGAAAGAAAAAGAAAAAGAGCCTGAGAAGCTTGACAAGATGGAAAGCCCTGCAGTCCCTAAGAAAAAGGGCTATGAAGAGGAGCGTAAGGAAAGTGATCGATGATAGCAGTGATGATGAACAAgtgagcgcccctatgtggcagtgagctgtagagggggggtttagtccaat Alignment from Spaln_aa2Genome CTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAGAGCTCTGCAGTCCCCAAGAAGAAGGGCTTTGAGGAGGAGCACAAGGACAGTGAC-GATGACAGCAGTGATGATGAGCAG aagggggcaagcaaccatattctgaatgcttttcattctgtccaccttagCTAACAGATGATGTAAGGAAAGAAAAAGAAAAAGAGCCTGAGAAGCTTGACAAGATGGAAAGCCCTGCAGTCCCTAAGAAAAAGGGCTATGAAGAGGAGCGTAAGGAAAGTGATcGATGATAGCAGTGATGATGAACAAgtgagcgcccctatgtggcagtgagctgtagagggggggtttagtccaat Alignment from Spaln_nt2Genome CTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAGAGCTCTGCAGTCCCCAAGAAGAAGGGCTTTGAGGAGGAGCACAAGGACAGTGA-CGATGACAGCAGTGATGATGAGCAG aagggggcaagcaaccatattctgaatgcttttcattctgtccaccttagCTAACAGATGATGTAAGGAAAGAAAAAGAAAAAGAGCCTGAGAAGCTTGACAAGATGGAAAGCCCTGCAGTCCCTAAGAAAAAGGGCTATGAAGAGGAGCGTAAGGAAAGTGATCGATGATAGCAGTGATGATGAACAAgtgagcgcccctatgtggcagtgagctgtagagggggggtttagtccaat Alignment from Pairagon CTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAGAGCTCTGCAGTCCCCAAGAAGAAGGGCTTTGAGGAGGAGCACAAGGACAGTGA-CGATGACAGCAGTGATGATGAGCAG aagggggcaagcaaccatattctgaatgcttttcattctgtccaccttagCTAACAGATGATGTAAGGAAAGAAAAAGAAAAAGAGCCTGAGAAGCTTGACAAGATGGAAAGCCCTGCAGTCCCTAAGAAAAAGGGCTATGAAGAGGAGCGTAAGGAAAGTGATCGATGATAGCAGTGATGATGAACAAgtgagcgcccctatgtggcagtgagctgtagagggggggtttagtccaat Alignment from Exonerate_protein2genome CTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAGAGCTCTGCAGTCCCCAAGAAGAAGGGCTTTGAGGAGGAGCACAAGGACAGTGAC-GATGACAGCAGTGATGATGAGCAG aagggggcaagcaaccatattctgaatgcttttcattctgtccaccttagCTAACAGATGATGTAAGGAAAGAAAAAGAAAAAGAGCCTGAGAAGCTTGACAAGATGGAAAGCCCTGCAGTCCCTAAGAAAAAGGGCTATGAAGAGGAGCGTAAGGAAAGTGATCGATGATAGCAGTGATGATGAACAAgtgagcgcccctatgtggcagtgagctgtagagggggggtttagtccaat Alignment from Exonerate_coding2genome CTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAGAGCTCTGCAGTCCCCAAGAAGAAGGGCTTTGAGGAGGAGCACAAGGACAGTGAC-GATGACAGCAGTGATGATGAGCAG aagggggcaagcaaccatattctgaatgcttttcattctgtccaccttagCTAACAGATGATGTAAGGAAAGAAAAAGAAAAAGAGCCTGAGAAGCTTGACAAGATGGAAAGCCCTGCAGTCCCTAAGAAAAAGGGCTATGAAGAGGAGCGTAAGGAAAGTGATCGATGATAGCAGTGATGATGAACAAgtgagcgcccctatgtggcagtgagctgtagagggggggtttagtccaat Alignment from GeneWise CTAACTGATGATGTGAAGAAGGAAAAAGAAAAGGAGCCAGAGAAGCTTGACAAGATGGAGAGCTCTGCAGTCCCCAAGAAGAAGGGCTTTGAGGAGGAGCACAAGGACAGTGAC-GATGACAGCAGTGATGATGAGCAG aagggggcaagcaaccatattctgaatgcttttcattctgtccaccttagCTAACAGATGATGTAAGGAAAGAAAAAGAAAAAGAGCCTGAGAAGCTTGACAAGATGGAAAGCCCTGCAGTCCCTAAGAAAAAGGGCTATGAAGAGGAGCGTAAGGAAAGTGATCGATGATAGCAGTGATGATGAACAAgtgagcgcccctatgtggcagtgagctgtagagggggggtttagtccaat #### Sf3b2_ID911_7 --> 0 - 1 Original Alignment ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGG-CAGGAAGAGATGAACTCTCAGCAGg tagcatggcatttttgagtttcagccccctgcttgtgccctgcctcctagATT---GACCCCTCAGTGGGCCCCAAGATCCCTCAGGCTGTGGAAAAGATCCTTCAGCTGAAGGAGAGTCAGCCAGCAAGAGATGAACTCTCAG---ggtaagagattaaacattcccttgatacttcaacacacattagctggggac Alignment from CESAR ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGG-CAGGAAGAGATGAACTCTCAGCAGg tagcatggcatttttgagtttcagccccctgcttgtgccctgcctcctagATT---GACCCCTCAGTGGGCCCCAAGATCCCTCAGGCTGTGGAAAAGATCCTTCAGCTGAAGGAGAGTCAGCCAGCAAGAGATGAACTCT---CAGggtaagagattaaacattcccttgatacttcaacacacattagctggggac Alignment from Spaln_aa2Genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCG tagcatggcatttttgagtttcagccccctgcttgtgccctgcctcctagATT---GACCCCTCAGTGGGCCCCAAGATCCCTCAGGCTGTGGAAAAGATCCTTCAGCTGAAGGAGAGTCAgccagcaagagatgaactctcagggtaagagattaaacattcccttgatacttcaacacacattagctggggac Alignment from Spaln_nt2Genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGGC-AGGAAGAGATGAACTCTCAGCAGG tagcatggcatttttgagtttcagccccctgcttgtgccctgcctcctagAT---TGACCCCTCAGTGGGCCCCAAGATCCCTCAGGCTGTGGAAAAGATCCTTCAGCTGAAGGAGAGTCAGCCAGCAAGAGATGAACTCT---CAGGgtaagagattaaacattcccttgatacttcaacacacattagctggggac Alignment from Pairagon ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGG-CAGGAAGAGATGAACTCTCAGCAGG tagcatggcatttttgagtttcagccccctgcttgtgccctgcctcctagAT---TGACCCCTCAGTGGGCCCCAAGATCCCTCAGGCTGTGGAAAAGATCCTTCAGCTGAAGGAGAGTCAGCCAGCAAGAGATGAACTCT---CAGGgtaagagattaaacattcccttgatacttcaacacacattagctggggac Alignment from Exonerate_protein2genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGG-CAGGAAGAGATGAACTCTCAGCAGG tagcatggcatttttgagtttcagccccctgcttgtgccctgcctcctagATT---GACCCCTCAGTGGGCCCCAAGATCCCTCAGGCTGTGGAAAAGATCCTTCAGCTGAAGGAGAGTCAGCCAGCAAGAGATGAACTCT---CAGGgtaagagattaaacattcccttgatacttcaacacacattagctggggac Alignment from Exonerate_coding2genome ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGG-CAGGAAGAGATGAACTCTCAGCAGG tagcatggcatttttgagtttcagccccctgcttgtgccctgcctcctagATT---GACCCCTCAGTGGGCCCCAAGATCCCTCAGGCTGTGGAAAAGATCCTTCAGCTGAAGGAGAGTCAGCCAGCAAGAGATGAACTCT---CAGGgtaagagattaaacattcccttgatacttcaacacacattagctggggac Alignment from GeneWise ATGGATGATCCTTCTGTGGGCCCCAAGATCCCCCAGGCTTTGGAAAAGATTCTTCAGCTGAAGGAGAGCCGG------CAGGAAGAGATGAAC-- tagcatggcatttttgagtttcagccccctgcttgtgccctgcctcctagATTGAC---CCCTCAGTGGGCCCCAAGATCCCTCAGGCTGTGGAAAAGATCCTTCAGCTGAAGGAGAGTCAGCCAGCAAGAGATGAACTCTCAGGgtaagagattaaacattcccttgatacttcaacacacattagctggggac #### Sf3b2_ID916_2 --> 2 - 0 Original Alignment ggAGTCGCGAGGAGTTAGTA-GAGCGGCTGCAGACCTACACCCGTCAG tggagctcttgtctactcaggaggagagcttgctttgtcatgatgagcagggAGTCGTGAAGAATTAGTACGAGAGGTTGCAGACCTATACCCGTCAGgtgagtatttccagtagactatgtaccgagatttctgaagtcaccaaaga Alignment from CESAR ggAGTCGCGAGGAGTTAGTA-GAGCGGCTGCAGACCTACACCCGTCAG tggagctcttgtctactcaggaggagagcttgctttgtcatgatgagcagggAGTCGTGAAGAATTAGTACGAGAGGTTGCAGACCTATACCCGTCAGgtgagtatttccagtagactatgtaccgagatttctgaagtcaccaaaga Alignment from Spaln_aa2Genome GCTGCAGACCTACACCCGTCAG tggagctcttgtctactcaggaggagagcttgctttgtcatgatgagcagggagtcgtgaagaattagtacgagagGTTGCAGACCTATACCCGTCAGgtgagtatttccagtagactatgtaccgagatttctgaagtcaccaaaga Alignment from Spaln_nt2Genome GGAGTCGCGAGGAGTTAGTA-GAGCGGCTGCAGACCTACACCCGTCAG tggagctcttgtctactcaggaggagagcttgctttgtcatgatgagcagGGAGTCGTGAAGAATTAGTACGAGAGGTTGCAGACCTATACCCGTCAGgtgagtatttccagtagactatgtaccgagatttctgaagtcaccaaaga Alignment from Pairagon GGAGTCGCGAGGAGTTAGTA-GAGCGGCTGCAGACCTACACCCGTCAG tggagctcttgtctactcaggaggagagcttgctttgtcatgatgagcagGGAGTCGTGAAGAATTAGTACGAGAGGTTGCAGACCTATACCCGTCAGgtgagtatttccagtagactatgtaccgagatttctgaagtcaccaaaga Alignment from Exonerate_protein2genome GGAGTCGCGAGGAGTTAGTA-GAGCGGCTGCAGACCTACACCCGTCAG tggagctcttgtctactcaggaggagagcttgctttgtcatgatgagcagGGAGTCGTGAAGAATTAGTACGAGAGGTTGCAGACCTATACCCGTCAGgtgagtatttccagtagactatgtaccgagatttctgaagtcaccaaaga Alignment from Exonerate_coding2genome tggagctcttgtctactcaggaggagagcttgctttgtcatgatgagcagggagtcgtgaagaattagtacgagaggttgcagacctatacccgtcaggtgagtatttccagtagactatgtaccgagatttctgaagtcaccaaaga Alignment from GeneWise CGTCAGACGG ------TCTTgtctactcaggaggagagcttgctttgtcatgatgagcagggagtcgtgaagaattagtacgagaggttgcagacctatacccgtcaggtgagtatttccagtagactatgtaccgagatttctgaagtcaccaaaga #### Sfxn2_ID9971_9 --> 0 - 2 Original Alignment AAGGTCAAAGTGATGCACGCCCCCCTGCAG-GTCTTGCTGTGTGGCTGCtt ctggctctctgctcctggctttatggcatctcatctgccatgtttgacagAAAGTCAAAGTGATGCATGCCCCCCTACAACGTG---CTTTGTGGTTGTtcgtaagatgatctcccaacgcagtgagctgatcagtattctttggacctga Alignment from CESAR AAGGTCAAAGTGATGCACGCCCCCCTGCAGGTCTTGCTGTGTGGCTGCtt ctggctctctgctcctggctttatggcatctcatctgccatgtttgacagAAAGTCAAAGTGATGCATGCCCCCCTACAA--CGTGCTTTGTGGTTGTtcgtaagatgatctcccaacgcagtgagctgatcagtattctttggacctga Alignment from Spaln_aa2Genome AAGGTCAAAGTGATGCACGCCCCCCTGCAGGTCTTGCTGTGTGGCTGCTT ctggctctctgctcctggctttatggcatctcatctgccatgtttgacagAAAGTCAAAGTGATGCATGCCCCCCTACAACGTGCTTTG------TGGTTgttcgtaagatgatctcccaacgcagtgagctgatcagtattctttggacctga Alignment from Spaln_nt2Genome AAGGTCAAAGTGATGCACGCCCCCCTGCAGGTCTTGCTGTGTGGCTGCTT ctggctctctgctcctggctttatggcatctcatctgccatgtttgacagAAAGTCAAAGTGATGCATGCCCCCCTACA--ACGTGCTTTGTGGTTGTTCgtaagatgatctcccaacgcagtgagctgatcagtattctttggacctga Alignment from Pairagon AAGGTCAAAGTGATGCACGCCCCCCTGCAGGTCTTGCTGTGTGGCTGCTT ctggctctctgctcctggctttatggcatctcatctgccatgtttgacagAAAGTCAAAGTGATGCATGCCCCCCTACAA--CGTGCTTTGTGGTTGTTCgtaagatgatctcccaacgcagtgagctgatcagtattctttggacctga Alignment from Exonerate_protein2genome AAGGTCAAAGTGATGCACGCCCCCCTGCAG-GTCTTGCTGTGTGGCTGCTT ctggctctctgctcctggctttatggcatctcatctgccatgtttgacagAAAGTCAAAGTGATGCATGCCCCCCTACAACGTG---CTTTGTGGTTGTTCgtaagatgatctcccaacgcagtgagctgatcagtattctttggacctga Alignment from Exonerate_coding2genome AAGGTCAAAGTGATGCACGCCCCCCTGCAG ctggctctctgctcctggctttatggcatctcatctgccatgtttgacagAAAGTCAAAGTGATGCATGCCCCCCTACAAcgtgctttgtggttgttcgtaagatgatctcccaacgcagtgagctgatcagtattctttggacctga Alignment from GeneWise ctggctctctgctcctggctttatggcatctcatctgccatgtttgacagaaagtcaaagtgatgcatgcccccctacaacgtgctttgtggttgttcgtaagatgatctcccaacgcagtgagctgatcagtattctttggacctga #### Sfxn3_ID9285_3 --> 1 - 2 Original Alignment gAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATT-GTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGca ataaaatgcttatacacctgaacccagtgtttcacattttatattcccagaAAGACTCCCACTGTGGTGTTTTGGCAGTGGGTGAATCAATCATTTAATGCTATCCGTTAACTACTCTAATCGGAGTGGAGATGCTCCCATCACTGTCaggtaagacacactcccacacaggcattcctggtccccatggcttttgtgtc Alignment from CESAR gAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATT-GTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGca ataaaatgcttatacacctgaacccagtgtttcacattttatattcccagaAAGACTCCCACTGTGGTGTTTTGGCAGTGGGTGAATCAATCATTTAATGCTATCCGTTAACTACTCTAATCGGAGTGGAGATGCTCCCATCACTGTCaggtaagacacactcccacacaggcattcctggtccccatggcttttgtgtc Alignment from Spaln_aa2Genome GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATT-GTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ataaaatgcttatacacctgaacccagtgtttcacattttatattcccagAAAGACTCCCACTGTGGTGTTTTGGCAGTGGGTGAATCAATCATTTAATGCTATCcGTTAACTACTCTAATCGGAGTGGAGATGCTCCCATCACTGTCAGgtaagacacactcccacacaggcattcctggtccccatggcttttgtgtc Alignment from Spaln_nt2Genome GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATT-GTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ataaaatgcttatacacctgaacccagtgtttcacattttatattcccagAAAGACTCCCACTGTGGTGTTTTGGCAGTGGGTGAATCAATCATTTAATGCTATCCGTTAACTACTCTAATCGGAGTGGAGATGCTCCCATCACTGTCAGgtaagacacactcccacacaggcattcctggtccccatggcttttgtgtc Alignment from Pairagon GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTAT-TGTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ataaaatgcttatacacctgaacccagtgtttcacattttatattcccagAAAGACTCCCACTGTGGTGTTTTGGCAGTGGGTGAATCAATCATTTAATGCTATCCGTTAACTACTCTAATCGGAGTGGAGATGCTCCCATCACTGTCAGgtaagacacactcccacacaggcattcctggtccccatggcttttgtgtc Alignment from Exonerate_protein2genome GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATT-GTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ataaaatgcttatacacctgaacccagtgtttcacattttatattcccagAAAGACTCCCACTGTGGTGTTTTGGCAGTGGGTGAATCAATCATTTAATGCTATCCGTTAACTACTCTAATCGGAGTGGAGATGCTCCCATCACTGTCAGgtaagacacactcccacacaggcattcctggtccccatggcttttgtgtc Alignment from Exonerate_coding2genome GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATT-GTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ataaaatgcttatacacctgaacccagtgtttcacattttatattcccagAAAGACTCCCACTGTGGTGTTTTGGCAGTGGGTGAATCAATCATTTAATGCTATCCGTTAACTACTCTAATCGGAGTGGAGATGCTCCCATCACTGTCAGgtaagacacactcccacacaggcattcctggtccccatggcttttgtgtc Alignment from GeneWise GAAGACTCCGACTGTGGTGTTCTGGCAGTGGGTCAATCAGTCCTTCAATGCTATT-GTGAATTACTCTAATCGCAGCGGCGATGCTCCCATCACTGTGCA ataaaatgcttatacacctgaacccagtgtttcacattttatattcccagAAAGACTCCCACTGTGGTGTTTTGGCAGTGGGTGAATCAATCATTTAATGCTATCCGTTAACTACTCTAATCGGAGTGGAGATGCTCCCATCACTGTCAGgtaagacacactcccacacaggcattcctggtccccatggcttttgtgtc #### Sfxn3_ID9291_9 --> 1 - 2 Original Alignment cTTGGTATTTGCCACACCCCTGTGCTGCGCTCTG-TTCCCTCAGAGAag actttatcctgatcagtgttgcgatcattttttttgaacatgaaatacagcTTGGTATTCGCCACCCCCCTGTGTTGTGCCTTGCTTTCCGCAGAGAgcgtacgagataccaatctaattgctctgcattaataagttagtatgtttcc Alignment from CESAR cTTGGTATTTGCCACACCCCTGTGCTGCGCTCTG-TTCCCTCAGAGAag actttatcctgatcagtgttgcgatcattttttttgaacatgaaatacagcTTGGTATTCGCCACCCCCCTGTGTTGTGCCTTGCTTTCCGCAGAGAgcgtacgagataccaatctaattgctctgcattaataagttagtatgtttcc Alignment from Spaln_aa2Genome CTTGGTATTTGCCACACCCCTGTGCTGCGCTCTG-TTCCCTCAGAGAAG actttatcctgatcagtgttgcgatcattttttttgaacatgaaatacagCTTGGTATTCGCCACCCCCCTGTGTTGTGCCTTGcTTTCCGCAGAGAGCgtacgagataccaatctaattgctctgcattaataagttagtatgtttcc Alignment from Spaln_nt2Genome CTTGGTATTTGCCACACCCCTGTGCTGCGCTCTG-TTCCCTCAGAGAAG actttatcctgatcagtgttgcgatcattttttttgaacatgaaatacagCTTGGTATTCGCCACCCCCCTGTGTTGTGCCTTGCTTTCCGCAGAGAGCgtacgagataccaatctaattgctctgcattaataagttagtatgtttcc Alignment from Pairagon CTTGGTATTTGCCACACCCCTGTGCTGCGCTCTG-TTCCCTCAGAGAAG actttatcctgatcagtgttgcgatcattttttttgaacatgaaatacagCTTGGTATTCGCCACCCCCCTGTGTTGTGCCTTGCTTTCCGCAGAGAGCgtacgagataccaatctaattgctctgcattaataagttagtatgtttcc Alignment from Exonerate_protein2genome CTTGGTATTTGCCACACCCCTGTGCTGCGCTCTG-TTCCCTCAGAGAAG actttatcctgatcagtgttgcgatcattttttttgaacatgaaatacagCTTGGTATTCGCCACCCCCCTGTGTTGTGCCTTGCTTTCCGCAGAGAGCgtacgagataccaatctaattgctctgcattaataagttagtatgtttcc Alignment from Exonerate_coding2genome CTTGGTATTTGCCACACCCCTGTGCTGCGCTCTG-TTCCCTCAGAGAAG actttatcctgatcagtgttgcgatcattttttttgaacatgaaatacagCTTGGTATTCGCCACCCCCCTGTGTTGTGCCTTGCTTTCCGCAGAGAGCgtacgagataccaatctaattgctctgcattaataagttagtatgtttcc Alignment from GeneWise actttatcctgatcagtgttgcgatcattttttttgaacatgaaatacagcttggtattcgccacccccctgtgttgtgccttgctttccgcagagagcgtacgagataccaatctaattgctctgcattaataagttagtatgtttcc #### Sipa1_ID1139_13 --> 2 - 2 Original Alignment g gaCAACCCATCTCAGAGAGCGGAGACCCC-AAGGAAGCTTTAAAGTGTGATTCTga ggtaacagtgccagttggatattagccatttctgttgctgccttgtgtagggCAACCCATCTCAGAGAGTGGTGATCTCCAAGGAGGCTTCAAAGTGTGATTCTgagtaagccttctctctgtgatcatgttgcccaattttctgttgggtgtggc Alignment from CESAR g gaCAACCCATCTCAGAGAGCGGAGAC-CCCAAGGAAGCTTTAAAGTGTGATTCTga ggtaagtgtgccagttggatattagccatttctgttgctgccttgtgtagggCAACCCATCTCAGAGAGTGGTGATCTCCAAGGAGGCTTCAAAGTGTGATTCTgagtaagccttctctctgtgatcatgttgcccaattttctgttgggtgtggc Alignment from Spaln_aa2Genome G GACAACCCATCTCAGAGAGCGGAGAC-CCCAAGGAAGCTTTAAAGTGTGATTCTGA GgtaacagtgccagttggatattagccatttctgttgctgccttgtgtagGGCAACCCATCTCAGAGAGTGGTGATcTCCAAGGAGGCTTCAAAGTGTGATTCTGAgtaagccttctctctgtgatcatgttgcccaattttctgttgggtgtggc Alignment from Spaln_nt2Genome G GACAACCCATCTCAGAGAGCGGAGACC-CCAAGGAAGCTTTAAAGTGTGATTCTGA GgtaacagtgccagttggatattagccatttctgttgctgccttgtgtagGGCAACCCATCTCAGAGAGTGGTGATCTCCAAGGAGGCTTCAAAGTGTGATTCTGAgtaagccttctctctgtgatcatgttgcccaattttctgttgggtgtggc Alignment from Pairagon G GACAACCCATCTCAGAGAGCGGAGA-CCCCAAGGAAGCTTTAAAGTGTGATTCTGA GgtaacagtgccagttggatattagccatttctgttgctgccttgtgtagGGCAACCCATCTCAGAGAGTGGTGATCTCCAAGGAGGCTTCAAAGTGTGATTCTGAgtaagccttctctctgtgatcatgttgcccaattttctgttgggtgtggc Alignment from Exonerate_protein2genome G GACAACCCATCTCAGAGAGCGGAGAC-CCCAAGGAAGCTTTAAAGTGTGATTCTGA GgtaacagtgccagttggatattagccatttctgttgctgccttgtgtagGGCAACCCATCTCAGAGAGTGGTGATCTCCAAGGAGGCTTCAAAGTGTGATTCTGAgtaagccttctctctgtgatcatgttgcccaattttctgttgggtgtggc Alignment from Exonerate_coding2genome GGACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCTGAGCCAGAACCCGGGAG GGTAACAGTGCCAGTTGGATATTAGCCATTTCTGTTGCTGCCTTGTGTAGGGCAACCCATCTCAGAGAGTGgtgatctccaaggaggcttcaaagtgtgattctgagtaagccttctctctgtgatcatgttgcccaattttctgttgggtgtggc Alignment from GeneWise GGACAACCCATCTCAGAGAGCGGAGACCCCAAGGAAGCTTTAAAGTGTGATTCT------------GAGCC GGTAACAGTGCCAGTTGGATATTAGCCATTTCTGTTGCTGCCTTGTGTAGGGCAACCCATCTCAGAGAGTGgtgatctccaaggaggcttcaaagtgtgattctgagtaagccttctctctgtgatcatgttgcccaattttctgttgggtgtggc #### Sipa1_ID1141_11 --> 0 - 1 Original Alignment GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATC-CTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGa gtcaagttaacattgagtgccatactgtctcttttctttatccctgacagGATCAGTCAGGAAGCCCTAGTAGCCATGAGGATACCAGTGACTCAGGTCCAGAATTGAAGGCTTCCATCCCTGCCCAGAACCTTATCGGTACGGAATTCCATCAGTAAAagtatcatggggaaacagggcatgagcaggagactgtccctaacccctgtg Alignment from CESAR GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATC-CTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGa gtcaagttaacattgagtgccatactgtctcttttctttatccctgacagGATCAGTCAGGAAGCCCTAGTAGCCATGAGGATACCAGTGACTCAGGTCCAGAATTGAAGGCTTCCATCCCTGCCCAGAACCTTATCGGTACGGAATTCCATCAGTAAAagtatcatggggaaacagggcatgagcaggagactgtccctaacccctgtg Alignment from Spaln_aa2Genome GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATC-CTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gtcaagttaacattgagtgccatactgtctcttttctttatccctgacagGATCAGTCAGGAAGCCCTAGTAGCCATGAGGATACCAGTGACTCAGGTCCAGAATTGAAGGCTTCCATCcCTGCCCAGAACCTTATCGGTACGGAATTCCATCAGTAAAAgtatcatggggaaacagggcatgagcaggagactgtccctaacccctgtg Alignment from Spaln_nt2Genome GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATCC-TGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gtcaagttaacattgagtgccatactgtctcttttctttatccctgacagGATCAGTCAGGAAGCCCTAGTAGCCATGAGGATACCAGTGACTCAGGTCCAGAATTGAAGGCTTCCATCCCTGCCCAGAACCTTATCGGTACGGAATTCCATCAGTAAAAgtatcatggggaaacagggcatgagcaggagactgtccctaacccctgtg Alignment from Pairagon GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCAT-CCTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gtcaagttaacattgagtgccatactgtctcttttctttatccctgacagGATCAGTCAGGAAGCCCTAGTAGCCATGAGGATACCAGTGACTCAGGTCCAGAATTGAAGGCTTCCATCCCTGCCCAGAACCTTATCGGTACGGAATTCCATCAGTAAAAgtatcatggggaaacagggcatgagcaggagactgtccctaacccctgtg Alignment from Exonerate_protein2genome GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATC-CTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gtcaagttaacattgagtgccatactgtctcttttctttatccctgacagGATCAGTCAGGAAGCCCTAGTAGCCATGAGGATACCAGTGACTCAGGTCCAGAATTGAAGGCTTCCATCCCTGCCCAGAACCTTATCGGTACGGAATTCCATCAGTAAAAgtatcatggggaaacagggcatgagcaggagactgtccctaacccctgtg Alignment from Exonerate_coding2genome GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATC-CTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gtcaagttaacattgagtgccatactgtctcttttctttatccctgacagGATCAGTCAGGAAGCCCTAGTAGCCATGAGGATACCAGTGACTCAGGTCCAGAATTGAAGGCTTCCATCCCTGCCCAGAACCTTATCGGTACGGAATTCCATCAGTAAAAgtatcatggggaaacagggcatgagcaggagactgtccctaacccctgtg Alignment from GeneWise GACCAGTCAGGAAGCCCCAGTAGCCATGAAGACACCAGTGACTCAGGCCCAGAACTGAGGGCCTCCATC-CTGCCCAGAACCTTGTCTCTGCGGAATTCCATCAGTAAGA gtcaagttaacattgagtgccatactgtctcttttctttatccctgacagGATCAGTCAGGAAGCCCTAGTAGCCATGAGGATACCAGTGACTCAGGTCCAGAATTGAAGGCTTCCATCCCTGCCCAGAACCTTATCGGTACGGAATTCCATCAGTAAAAgtatcatggggaaacagggcatgagcaggagactgtccctaacccctgtg #### Sipa1_ID1142_10 --> 1 - 0 Original Alignment cTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAAC-ACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG caagggaaatgctaccgcaagaaggaccctgtattccttgtcatccatagcTCCCTGTCTGATGAGGTCCCTGTCCTACCCAAGCATTACACCAGATCTCCTACTTATTACAACAGCTAACACTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtaggttgtcaagttaacattgagtgccatactgtctgtggtttgatgtc Alignment from CESAR cTCCCTGTCCGATGAGGCTCCAGTCCTGCCC-AACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG caagggaaatgctaccgcaagaaggaccctgtattccttgtcatccatagcTCCCTGTCTGATGAGGTCCCTGTCCTACCCAAGCATTACACCAGATCTCCTACTTATTACAACAGCTAACACTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtaggttgtcaagttaacattgagtgccatactgtctcttttctttatcc Alignment from Spaln_aa2Genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCC-AACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG caagggaaatgctaccgcaagaaggaccctgtattccttgtcatccatagCTCCCTGTCTGATGAGGTCCCTGTCCTACCCaAGCATTACACCAGATCTCCTACTTATTACAACAGCTAACACTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtaggttgtcaagttaacattgagtgccatactgtctgtggtttgatgtc Alignment from Spaln_nt2Genome CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAA-CACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG caagggaaatgctaccgcaagaaggaccctgtattccttgtcatccatagCTCCCTGTCTGATGAGGTCCCTGTCCTACCCAAGCATTACACCAGATCTCCTACTTATTACAACAGCTAACACTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtaggttgtcaagttaacattgagtgccatactgtctgtggtttgatgtc Alignment from Pairagon CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAA-CACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG caagggaaatgctaccgcaagaaggaccctgtattccttgtcatccatagCTCCCTGTCTGATGAGGTCCCTGTCCTACCCAAGCATTACACCAGATCTCCTACTTATTACAACAGCTAACACTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtaggttgtcaagttaacattgagtgccatactgtctgtggtttgatgtc Alignment from Exonerate_protein2genome CTCCCTGTCCGATGAGGCTCCAGTCCTG-CCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG caagggaaatgctaccgcaagaaggaccctgtattccttgtcatccatagCTCCCTGTCTGATGAGGTCCCTGTCCTACCCAAGCATTACACCAGATCTCCTACTTATTACAACAGCTAACACTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtaggttgtcaagttaacattgagtgccatactgtctgtggtttgatgtc Alignment from Exonerate_coding2genome CTCCCTGTCCGATGAGGCTCCAGTCCTG-CCCAACACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG caagggaaatgctaccgcaagaaggaccctgtattccttgtcatccatagCTCCCTGTCTGATGAGGTCCCTGTCCTACCCAAGCATTACACCAGATCTCCTACTTATTACAACAGCTAACACTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtaggttgtcaagttaacattgagtgccatactgtctgtggtttgatgtc Alignment from GeneWise CTCCCTGTCCGATGAGGCTCCAGTCCTGCCCAAC-ACCACTCCAGACCTCCTCCTTGTCACCACTGCCAACCCATCTGCACCTGGTACTGACAGAGAAACACCCCCTTCCCAG caagggaaatgctaccgcaagaaggaccctgtattccttgtcatccatagCTCCCTGTCTGATGAGGTCCCTGTCCTACCCAAGCATTACACCAGATCTCCTACTTATTACAACAGCTAACACTTCTGCACCTGATACTGATAGAGAAACACCCCCTTCCCAGgtaggttgtcaagttaacattgagtgccatactgtctgtggtttgatgtc #### Sipa1_ID1146_6 --> 0 - 2 Original Alignment CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGC-CCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACag ttgggcacactgaagatcatagatttttcacaccatgtgccttctgccagCTCCTAAGGAAACGTCACATCAGTAATGATATTGTGACCATTGTGTTCCAAGAGCCCGGCAGCAAGCCCTTCTGTCCCTATGACAATCTGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACATCATACaggtatggatttgggtgaacttgtgtcatagggttgggtcaactatcatcat Alignment from CESAR CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGC-CCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACag ttgggcacactgaagatcatagatttttcacaccatgtgccttctgccagCTCCTAAGGAAACGTCACATCAGTAATGATATTGTGACCATTGTGTTCCAAGAGCCCGGCAGCAAGCCCTTCTGTCCCTATGACAATCTGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACATCATACaggtatggatttgggtgaacttgtgtcatagggttgggtcaactatcatcat Alignment from Spaln_aa2Genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCT-ACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgggcacactgaagatcatagatttttcacaccatgtgccttctgccagCTCCTAAGGAAACGTCACATCAGTAATGATATTGTGACCATTGTGTTCCAAGAGCCCGGCAGCAAGCCCTTCTGTCCCtATGACAATCTGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACATCATACAGgtatggatttgggtgaacttgtgtcatagggttgggtcaactatcatcat Alignment from Spaln_nt2Genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTG-CCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgggcacactgaagatcatagatttttcacaccatgtgccttctgccagCTCCTAAGGAAACGTCACATCAGTAATGATATTGTGACCATTGTGTTCCAAGAGCCCGGCAGCAAGCCCTTCTGTCCCTATGACAATCTGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACATCATACAGgtatggatttgggtgaacttgtgtcatagggttgggtcaactatcatcat Alignment from Pairagon CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTG-CCCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgggcacactgaagatcatagatttttcacaccatgtgccttctgccagCTCCTAAGGAAACGTCACATCAGTAATGATATTGTGACCATTGTGTTCCAAGAGCCCGGCAGCAAGCCCTTCTGTCCCTATGACAATCTGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACATCATACAGgtatggatttgggtgaacttgtgtcatagggttgggtcaactatcatcat Alignment from Exonerate_protein2genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGC-CCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgggcacactgaagatcatagatttttcacaccatgtgccttctgccagCTCCTAAGGAAACGTCACATCAGTAATGATATTGTGACCATTGTGTTCCAAGAGCCCGGCAGCAAGCCCTTCTGTCCCTATGACAATCTGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACATCATACAGgtatggatttgggtgaacttgtgtcatagggttgggtcaactatcatcat Alignment from Exonerate_coding2genome CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGC-CCTACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgggcacactgaagatcatagatttttcacaccatgtgccttctgccagCTCCTAAGGAAACGTCACATCAGTAATGATATTGTGACCATTGTGTTCCAAGAGCCCGGCAGCAAGCCCTTCTGTCCCTATGACAATCTGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACATCATACAGgtatggatttgggtgaacttgtgtcatagggttgggtcaactatcatcat Alignment from GeneWise CTCCTGAGGAAGCGTCATATCGGCAACGATATTGTGACCATCGTGTTCCAGGAGCCCGGTAGCAAGCCCTTCTGCCCT-ACGACAATCCGCTCTCACTTCCAGCACGTTTTCTTGGTGGTGCGTGCGCATGCTCCCTGCACCCCACACACCTCATACAG ttgggcacactgaagatcatagatttttcacaccatgtgccttctgccagCTCCTAAGGAAACGTCACATCAGTAATGATATTGTGACCATTGTGTTCCAAGAGCCCGGCAGCAAGCCCTTCTGTCCCTATGACAATCTGCTCTCACTTCCAGCATGTTTTCTTGGTGGTGCGAGCACATGCACCTTGCACTCCCCACACATCATACAGgtatggatttgggtgaacttgtgtcatagggttgggtcaactatcatcat #### Sipa1_ID1147_5 --> 2 - 0 Original Alignment cgGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGAC-CATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tgtagcctaccatagtatccttgcccacccccccccctttgtttctacagcgGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCCATGAGATCATGTTTCACGTGTCCACGATGTTGCCTTACACACCTAATAACCAGCAACAGgtagggagagaattttagtagccaagcccagaaaagactactgggaagca Alignment from CESAR cgGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGAC-CATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tgtagcctaccatagtatccttgcccacccccccccctttgtttctacagcgGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCCATGAGATCATGTTTCACGTGTCCACGATGTTGCCTTACACACCTAATAACCAGCAACAGgtagggagagaattttagtagccaagcccagaaaagactactgggaagca Alignment from Spaln_aa2Genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGAC-CATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tgtagcctaccatagtatccttgcccacccccccccctttgtttctacagCGGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATcCATGAGATCATGTTTCACGTGTCCACGATGTTGCCTTACACACCTAATAACCAGCAACAGgtagggagagaattttagtagccaagcccagaaaagactactgggaagca Alignment from Spaln_nt2Genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGA-CCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tgtagcctaccatagtatccttgcccacccccccccctttgtttctacagCGGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCCATGAGATCATGTTTCACGTGTCCACGATGTTGCCTTACACACCTAATAACCAGCAACAGgtagggagagaattttagtagccaagcccagaaaagactactgggaagca Alignment from Pairagon CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGA-CCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tgtagcctaccatagtatccttgcccacccccccccctttgtttctacagCGGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCCATGAGATCATGTTTCACGTGTCCACGATGTTGCCTTACACACCTAATAACCAGCAACAGgtagggagagaattttagtagccaagcccagaaaagactactgggaagca Alignment from Exonerate_protein2genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGAC-CATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tgtagcctaccatagtatccttgcccacccccccccctttgtttctacagCGGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCCATGAGATCATGTTTCACGTGTCCACGATGTTGCCTTACACACCTAATAACCAGCAACAGgtagggagagaattttagtagccaagcccagaaaagactactgggaagca Alignment from Exonerate_coding2genome CGGATTCCACGGGCACACACTCACTCTACACCACCTACCAAGAC-CATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tgtagcctaccatagtatccttgcccacccccccccctttgtttctacagCGGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCCATGAGATCATGTTTCACGTGTCCACGATGTTGCCTTACACACCTAATAACCAGCAACAGgtagggagagaattttagtagccaagcccagaaaagactactgggaagca Alignment from GeneWise -------------------------------------GATTCCACGGGCACACACTCACTCTACACCACCTACCAA-GACCATGAGATCATGTTTCACGTGTCCACGATGCTGCCTTACACGCCTAATAACCAGCAACAG tgtagcctaccatagTATCCTTGCCCACCCCCCCCCCTTTGTTTCTACAGCGGATTCCACGGGCACCCACTCACTCTACACCACCTACCAAGATCCATGAGATCATGTTTCACGTGTCCACGATGTTGCCTTACACACCTAATAACCAGCAACAGgtagggagagaattttagtagccaagcccagaaaagactactgggaagca #### Slc15a3_ID3029_4 --> 0 - 0 Original Alignment ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGG-ACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttttagggctctactactatgtactgtcgatcggtgcacttggtctttagATGCAGTCAACTTACATCCTCCAAGGTCTACACCTCCATATCCCAAACATCTTCAGGCACTAATCCTAACATATCTCTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtactgtgctacaacatgattatatcacaatgaggacagttggcgcagca Alignment from CESAR ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGG-ACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttttagggctctactactatgtactgtcgatcggtgcacttggtctttagATGCAGTCAACTTACATCCTCCAAGGTCTACACCTCCATATCCCAAACATCTTCAGGCACTAATCCTAACATATCTCTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtactgtgctacaacatgattatatcacaatgaggacagttggcgcagca Alignment from Spaln_aa2Genome ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGG-ACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttttagggctctactactatgtactgtcgatcggtgcacttggtctttagATGCAGTCAACTTACATCCTCCAAGGTCTACACCTCCATATCCCAAACATCTTCAGGcACTAATCCTAACATATCTCTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtactgtgctacaacatgattatatcacaatgaggacagttggcgcagca Alignment from Spaln_nt2Genome ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGG-ACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttttagggctctactactatgtactgtcgatcggtgcacttggtctttagATGCAGTCAACTTACATCCTCCAAGGTCTACACCTCCATATCCCAAACATCTTCAGGCACTAATCCTAACATATCTCTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtactgtgctacaacatgattatatcacaatgaggacagttggcgcagca Alignment from Pairagon ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGG-ACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttttagggctctactactatgtactgtcgatcggtgcacttggtctttagATGCAGTCAACTTACATCCTCCAAGGTCTACACCTCCATATCCCAAACATCTTCAGGCACTAATCCTAACATATCTCTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtactgtgctacaacatgattatatcacaatgaggacagttggcgcagca Alignment from Exonerate_protein2genome ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGG-ACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttttagggctctactactatgtactgtcgatcggtgcacttggtctttagATGCAGTCAACTTACATCCTCCAAGGTCTACACCTCCATATCCCAAACATCTTCAGGCACTAATCCTAACATATCTCTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtactgtgctacaacatgattatatcacaatgaggacagttggcgcagca Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ATGCAGTCCACCTATGTCCTCCAAGGTCTCCACCTCCATATCCCCAACATCTTCAGG-ACCAACCCTAACATCTCTTTGTTGCTGAGATCAGATAGCAGTAACTACAGG ttttagggctctactactatgtactgtcgatcggtgcacttggtctttagATGCAGTCAACTTACATCCTCCAAGGTCTACACCTCCATATCCCAAACATCTTCAGGCACTAATCCTAACATATCTCTGTTGCTGAGATCAGATAGCAGTAACTACAGAgtactgtgctacaacatgattatatcacaatgaggacagttggcgcagca #### Slc22a12_ID1791_6 --> 0 - 2 Original Alignment GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACC-ATCATCTCCATGCTGTGCtg cttggactgggggagaacctggagacgacctttgctggcctttccggcagGTCCTGTGGTCAGCTATGGACAAGGAACCAAGCAGGGACCAGGCCGGTGCCAGTCTTGGCACTTTACTTCACACACCTGGATTGCGCCACCGAAGCCATTATCTCTATGCTGTGCctgtaagtccttctctgcaatggttggccagtggaagttgcccagtcattag Alignment from CESAR GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGA-ACCATCATCTCCATGCTGTGCtg cttggactgggggagaacctggagacgacctttgctggcctttccggcagGTCCTGTGGTCAGCTATGGACAAGGAACCAAGCAGGGACCAGGCCGGTGCCAGTCTTGGCACTTTACTTCACACACCTGGATTGCGCCACCGAAGCCATTATCTCTATGCTGTGCctgtaagtccttctctgcaatggttggccagtggaagttgcccagtcattag Alignment from Spaln_aa2Genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGA-ACCATCATCTCCATGCTGTGCTG cttggactgggggagaacctggagacgacctttgctggcctttccggcagGTCCTGTGGTCAGCTATGGACAAGGAACCAAGCAGGGACCAGGCCGGTGCCAGTCTTGGCACTTTACTTCACACACCTGGATTGCGCCACCGAaGCCATTATCTCTATGCTGTGCCTgtaagtccttctctgcaatggttggccagtggaagttgcccagtcattag Alignment from Spaln_nt2Genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAA-CCATCATCTCCATGCTGTGCTG cttggactgggggagaacctggagacgacctttgctggcctttccggcagGTCCTGTGGTCAGCTATGGACAAGGAACCAAGCAGGGACCAGGCCGGTGCCAGTCTTGGCACTTTACTTCACACACCTGGATTGCGCCACCGAAGCCATTATCTCTATGCTGTGCCTgtaagtccttctctgcaatggttggccagtggaagttgcccagtcattag Alignment from Pairagon GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAA-CCATCATCTCCATGCTGTGCTG cttggactgggggagaacctggagacgacctttgctggcctttccggcagGTCCTGTGGTCAGCTATGGACAAGGAACCAAGCAGGGACCAGGCCGGTGCCAGTCTTGGCACTTTACTTCACACACCTGGATTGCGCCACCGAAGCCATTATCTCTATGCTGTGCCTgtaagtccttctctgcaatggttggccagtggaagttgcccagtcattag Alignment from Exonerate_protein2genome GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGAACC-ATCATCTCCATGCTGTGCTG cttggactgggggagaacctggagacgacctttgctggcctttccggcagGTCCTGTGGTCAGCTATGGACAAGGAACCAAGCAGGGACCAGGCCGGTGCCAGTCTTGGCACTTTACTTCACACACCTGGATTGCGCCACCGAAGCCATTATCTCTATGCTGTGCCTgtaagtccttctctgcaatggttggccagtggaagttgcccagtcattag Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTGCTGCGGTCAGCTATGGAGGAGGAACCAAGCAGGGACAAAGCTGGTGCCAGTCTGGGCACTCTACTCCACACACCTGGGCTGCGCCACCGA-ACCATCATCTCCATGCTGTGCTG cttggactgggggagaacctggagacgacctttgctggcctttccggcagGTCCTGTGGTCAGCTATGGACAAGGAACCAAGCAGGGACCAGGCCGGTGCCAGTCTTGGCACTTTACTTCACACACCTGGATTGCGCCACCGAAGCCATTATCTCTATGCTGTGCCTgtaagtccttctctgcaatggttggccagtggaagttgcccagtcattag #### Slc22a12_ID1794_3 --> 1 - 1 Original Alignment gTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTT-CGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCt tagccacacagagcttttgttgctcctctctttgattgtttttttttcaggTTCGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCTGTGTCTGTCACAGGTGCTGCTTTCATGCCCACCTTCCCACTGCATTGTCTATTTCTCCTTCCTGCTGGCATCCTCAGTGGCAGGCATCATGATGAATACAGCCAGTCTTtgtcggtcccactcctagtgtgatgttgtaaggctactgcggacatacatg Alignment from CESAR gTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGT-TTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCt tagccacacagagcttttgttgctcctctctttgattgtttttttttcaggTTCGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCTGTGTCTGTCACAGGTGCTGCTTTCATGCCCACCTTCCCACTGCATTGTCTATTTCTCCTTCCTGCTGGCATCCTCAGTGGCAGGCATCATGATGAATACAGCCAGTCTTtgtcggtcccactcctagtgtgatgttgtaaggctactgcggctgtgtgga Alignment from Spaln_aa2Genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTG-TTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT tagccacacagagcttttgttgctcctctctttgattgtttttttttcagGTTCGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCTGTGTCTGTCACAGGTGCTGCTTTCATGCCCACCTTCCCACTGCATTGTCTAtTTCTCCTTCCTGCTGGCATCCTCAGTGGCAGGCATCATGATGAATACAGCCAGTCTTTgtcggtcccactcctagtgtgatgttgtaaggctactgcggacatacatg Alignment from Spaln_nt2Genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTCGT-TTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT tagccacacagagcttttgttgctcctctctttgattgtttttttttcagGTTCGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCTGTGTCTGTCACAGGTGCTGCTTTCATGCCCACCTTCCCACTGCATTGTCTATTTCTCCTTCCTGCTGGCATCCTCAGTGGCAGGCATCATGATGAATACAGCCAGTCTTTgtcggtcccactcctagtgtgatgttgtaaggctactgcggacatacatg Alignment from Pairagon GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTTC-GTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT tagccacacagagcttttgttgctcctctctttgattgtttttttttcagGTTCGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCTGTGTCTGTCACAGGTGCTGCTTTCATGCCCACCTTCCCACTGCATTGTCTATTTCTCCTTCCTGCTGGCATCCTCAGTGGCAGGCATCATGATGAATACAGCCAGTCTTTgtcggtcccactcctagtgtgatgttgtaaggctactgcggacatacatg Alignment from Exonerate_protein2genome GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTG-TTTCGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT tagccacacagagcttttgttgctcctctctttgattgtttttttttcagGTTCGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCTGTGTCTGTCACAGGTGCTGCTTTCATGCCCACCTTCCCACTGCATTGTCTATTTCTCCTTCCTGCTGGCATCCTCAGTGGCAGGCATCATGATGAATACAGCCAGTCTTTgtcggtcccactcctagtgtgatgttgtaaggctactgcggacatacatg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise GTTTGGGCGCAGAAGGGTGCTGACCTGGAGCTATCTTCTGGTGTCCGTGTCCGGCACAGCAGCTGCCTTCATGCCCACCTTCCCCCTCTACTGCCTGTTT-CGTTTCCTGCTGGCCTCTGCAGTGGCAGGTGTCATGATGAACACAGCCAGTCTCT tagccacacagagcttttgttgctcctctctttgattgtttttttttcagGTTCGGATGCAGAAGGGTACTGACCTGGAGCTATCTCTTGGTGTCTGTGTCTGTCACAGGTGCTGCTTTCATGCCCACCTTCCCACTGCATTGTCTATTTCTCCTTCCTGCTGGCATCCTCAGTGGCAGGCATCATGATGAATACAGCCAGTCTTTgtcggtcccactcctagtgtgatgttgtaaggctactgcggacatacatg #### Slc22a26_ID2221_4 --> 2 - 2 Original Alignment tgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTG-GCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAag cacagttcttgcaattttacctgctaaatctcatcatggtgcctggtcagtgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACGCTGTCAATGAGCCCTCATCATTTTGGAGGCCTTATTCTGGCAGGATTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTACGCTGTATCTGTGCCAATTTTTGTCTTGCTTATACCCACAaggtgaggcacaagaattcttatacaccaataagagacaaacagagagccaa Alignment from CESAR tgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTG-GCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAag cacagttcttgcaattttacctgctaaatctcatcatggtgcctggtcagtgTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACGCTGTCAATGAGCCCTCATCATTTTGGAGGCCTTATTCTGGCAGGATTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTACGCTGTATCTGTGCCAATTTTTGTCTTGCTTATACCCACAaggtgaggcacaagaattcttatacaccaataagagacaaacagagagccaa Alignment from Spaln_aa2Genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTG-GCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG cacagttcttgcaattttacctgctaaatctcatcatggtgcctggtcagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACGCTGTCAATGAGCCCTCATCATTTTGGAGGCCTTATTCTGGCAGGATTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTAcGCTGTATCTGTGCCAATTTTTGTCTTGCTTATACCCACAAGgtgaggcacaagaattcttatacaccaataagagacaaacagagagccaa Alignment from Spaln_nt2Genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTG-GCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG cacagttcttgcaattttacctgctaaatctcatcatggtgcctggtcagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACGCTGTCAATGAGCCCTCATCATTTTGGAGGCCTTATTCTGGCAGGATTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTACGCTGTATCTGTGCCAATTTTTGTCTTGCTTATACCCACAAGgtgaggcacaagaattcttatacaccaataagagacaaacagagagccaa Alignment from Pairagon TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTG-GCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG cacagttcttgcaattttacctgctaaatctcatcatggtgcctggtcagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACGCTGTCAATGAGCCCTCATCATTTTGGAGGCCTTATTCTGGCAGGATTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTACGCTGTATCTGTGCCAATTTTTGTCTTGCTTATACCCACAAGgtgaggcacaagaattcttatacaccaataagagacaaacagagagccaa Alignment from Exonerate_protein2genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTG-GCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG cacagttcttgcaattttacctgctaaatctcatcatggtgcctggtcagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACGCTGTCAATGAGCCCTCATCATTTTGGAGGCCTTATTCTGGCAGGATTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTACGCTGTATCTGTGCCAATTTTTGTCTTGCTTATACCCACAAGgtgaggcacaagaattcttatacaccaataagagacaaacagagagccaa Alignment from Exonerate_coding2genome TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTG-GCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG cacagttcttgcaattttacctgctaaatctcatcatggtgcctggtcagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACGCTGTCAATGAGCCCTCATCATTTTGGAGGCCTTATTCTGGCAGGATTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTACGCTGTATCTGTGCCAATTTTTGTCTTGCTTATACCCACAAGgtgaggcacaagaattcttatacaccaataagagacaaacagagagccaa Alignment from GeneWise TGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACACTGTCAATGAGTTCTCATCATTTTGGAGGCCTTATCCTGGCAGGTCTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTG-GCAATATCTGTGCCAATATTTGTCTTGCTTATACCCACAAG cacagttcttgcaattttacctgctaaatctcatcatggtgcctggtcagTGTTAGAATGGACAAGCCCTAAAACCCAAGCCTTGGTGACCACGCTGTCAATGAGCCCTCATCATTTTGGAGGCCTTATTCTGGCAGGATTGGCATTTGCATTTCAAAACTGGCACCACCTTCAGCTACGCTGTATCTGTGCCAATTTTTGTCTTGCTTATACCCACAAGgtgaggcacaagaattcttatacaccaataagagacaaacagagagccaa #### Slc22a8_ID2275_8 --> 2 - 2 Original Alignment aaATGCAGCTCTTGAGAACAGCACTGGCTGTATTT-GGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCag tgtctcctagcaaatttacatgcaaaggtgacaggtacctcccaccctagaaATGGAGATAGTGAGGACAGCACTGGCTGTATTTCGGTATGGGATGCTTATCCGGCTCCTTCAGCTGCCTCTTCTTTTACACCAGTGAGCTCTACCCCAGAGTCCTCaggtgagtggtgtacttgggtcaggagtccacctaaagagttgaattctcaa Alignment from CESAR aaATGCAGCTCTTGAGAACAGCACTGGCTGTATTT-GGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCag tgtctcctagcaaatttacatgcaaaggtgacaggtacctcccaccctagaaATGGAGATAGTGAGGACAGCACTGGCTGTATTTCGGTATGGGATGCTTATCCGGCTCCTTCAGCTGCCTCTTCTTTTACACCAGTGAGCTCTACCCCAGAGTCCTCaggtgagtggtgtacttgggtcaggagtccacctaaagagttgaattctcaa Alignment from Spaln_aa2Genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTT-GGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tgtctcctagcaaatttacatgcaaaggtgacaggtacctcccaccctagAAATGGAGATAGTGAGGACAGCACTGGCTGTATTTcGGTATGGGATGCTTATCCGGCTCCTTCAGCTGCCTCTTCTTTTACACCAGTGAGCTCTACCCCAGAGTCCTCAGgtgagtggtgtacttgggtcaggagtccacctaaagagttgaattctcaa Alignment from Spaln_nt2Genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGGAA-GGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tgtctcctagcaaatttacatgcaaaggtgacaggtacctcccaccctagAAATGGAGATAGTGAGGACAGCACTGGCTGTATTTCGGTATGGGATGCTTATCCGGCTCCTTCAGCTGCCTCTTCTTTTACACCAGTGAGCTCTACCCCAGAGTCCTCAGgtgagtggtgtacttgggtcaggagtccacctaaagagttgaattctcaa Alignment from Pairagon AAATGCAGCTCTTGAGAACAGCACTGGCTGTATTTGGG-AAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tgtctcctagcaaatttacatgcaaaggtgacaggtacctcccaccctagAAATGGAGATAGTGAGGACAGCACTGGCTGTATTTCGGTATGGGATGCTTATCCGGCTCCTTCAGCTGCCTCTTCTTTTACACCAGTGAGCTCTACCCCAGAGTCCTCAGgtgagtggtgtacttgggtcaggagtccacctaaagagttgaattctcaa Alignment from Exonerate_protein2genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTA-TTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tgtctcctagcaaatttacatgcaaaggtgacaggtacctcccaccctagAAATGGAGATAGTGAGGACAGCACTGGCTGTATTTCGGTATGGGATGCTTATCCGGCTCCTTCAGCTGCCTCTTCTTTTACACCAGTGAGCTCTACCCCAGAGTCCTCAGgtgagtggtgtacttgggtcaggagtccacctaaagagttgaattctcaa Alignment from Exonerate_coding2genome AAATGCAGCTCTTGAGAACAGCACTGGCTGTA-TTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tgtctcctagcaaatttacatgcaaaggtgacaggtacctcccaccctagAAATGGAGATAGTGAGGACAGCACTGGCTGTATTTCGGTATGGGATGCTTATCCGGCTCCTTCAGCTGCCTCTTCTTTTACACCAGTGAGCTCTACCCCAGAGTCCTCAGgtgagtggtgtacttgggtcaggagtccacctaaagagttgaattctcaa Alignment from GeneWise AAATGCAGCTCTTGAGAACAGCACTGGCT-GTATTTGGGAAGGGATGCCTGTCTGGCTCCTTCAGCTGCCTCTTCCTCTACACAAGTGAGCTCTACCCTACAGTCCTCAG tgtctcctagcaaatttacatgcaaaggtgacaggtacctcccaccctagAAATGGAGATAGTGAGGACAGCACTGGCTGTATTTCGGTATGGGATGCTTATCCGGCTCCTTCAGCTGCCTCTTCTTTTACACCAGTGAGCTCTACCCCAGAGTCCTCAGgtgagtggtgtacttgggtcaggagtccacctaaagagttgaattctcaa #### Slc25a45_ID1293_4 --> 0 - 0 Original Alignment GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTG-TTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG acctaagttttgctaatgtttttatacaaactggcccttatactttgcagGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCTCTGGTTAACTCCGTCTTGCTTTGGAGTGTACAGCAACACGCTCCTGGCACTAACAGCCACATCCCATCAGGAGCGCCAGGTCCGGCCTCCAAGCCACACAAATATCTTTATAGCAGGTTGTACCGGGGGTCTCCGTCAGgttaatgtatcattgttgcaggataattgatatactcttagttcatcgaa Alignment from CESAR GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTG-TTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG acctaagttttgctaatgtttttatacaaactggcccttatactttgcagGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCTCTGGTTAACTCCGTCTTGCTTTGGAGTGTACAGCAACACGCTCCTGGCACTAACAGCCACATCCCATCAGGAGCGCCAGGTCCGGCCTCCAAGCCACACAAATATCTTTATAGCAGGTTGTACCGGGGGTCTCCGTCAGgttaatgtatcattgttgcaggataattgatatactcttagttcatcgaa Alignment from Spaln_aa2Genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTG-TTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG acctaagttttgctaatgtttttatacaaactggcccttatactttgcagGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCTCTGGTTAACTCCGTCTTGcTTTGGAGTGTACAGCAACACGCTCCTGGCACTAACAGCCACATCCCATCAGGAGCGCCAGGTCCGGCCTCCAAGCCACACAAATATCTTTATAGCAGGTTGTACCGGGGGTCTCCGTCAGgttaatgtatcattgttgcaggataattgatatactcttagttcatcgaa Alignment from Spaln_nt2Genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTG-TTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG acctaagttttgctaatgtttttatacaaactggcccttatactttgcagGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCTCTGGTTAACTCCGTCTTGCTTTGGAGTGTACAGCAACACGCTCCTGGCACTAACAGCCACATCCCATCAGGAGCGCCAGGTCCGGCCTCCAAGCCACACAAATATCTTTATAGCAGGTTGTACCGGGGGTCTCCGTCAGgttaatgtatcattgttgcaggataattgatatactcttagttcatcgaa Alignment from Pairagon GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTG-TTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG acctaagttttgctaatgtttttatacaaactggcccttatactttgcagGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCTCTGGTTAACTCCGTCTTGCTTTGGAGTGTACAGCAACACGCTCCTGGCACTAACAGCCACATCCCATCAGGAGCGCCAGGTCCGGCCTCCAAGCCACACAAATATCTTTATAGCAGGTTGTACCGGGGGTCTCCGTCAGgttaatgtatcattgttgcaggataattgatatactcttagttcatcgaa Alignment from Exonerate_protein2genome GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTG-TTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG acctaagttttgctaatgtttttatacaaactggcccttatactttgcagGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCTCTGGTTAACTCCGTCTTGCTTTGGAGTGTACAGCAACACGCTCCTGGCACTAACAGCCACATCCCATCAGGAGCGCCAGGTCCGGCCTCCAAGCCACACAAATATCTTTATAGCAGGTTGTACCGGGGGTCTCCGTCAGgttaatgtatcattgttgcaggataattgatatactcttagttcatcgaa Alignment from Exonerate_coding2genome CGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTACCGCCATGAGTCAGTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTCCTG-TTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG ACCTAAGTTTTGCTAATGTTTTTATACAAACTGGCCCTTATACTTTGCAGGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCTCTGGTTAACTCCGTCTTGCTTTGGAGTGTACAGCAACACGCTCCTGGCACTAACAGCCACATCCCATCAGGAGCGCCAGGTCCGGCCTCCAAGCCACACAAATATCTTTATAGCAGGTTGTACCGGGGGTCTCCGTCAGgttaatgtatcattgttgcaggataattgatatactcttagttcatcgaa Alignment from GeneWise GTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAACTCCGTC-CTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGGCCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAG acctaagttttgctaatgtttttatacaaactggcccttatactttgcagGTTCTAGGTTTCTTCAAGGGAATGAGTTTCCCAATTGCTACTGTAGCTCTGGTTAACTCCGTCTTGCTTTGGAGTGTACAGCAACACGCTCCTGGCACTAACAGCCACATCCCATCAGGAGCGCCAGGTCCGGCCTCCAAGCCACACAAATATCTTTATAGCAGGTTGTACCGGGGGTCTCCGTCAGgttaatgtatcattgttgcaggataattgatatactcttagttcatcgaa #### Slc25a45_ID1294_5 --> 0 - 1 Original Alignment GCCTACTGCCTGGCTCCTTTTGACCTCATCAAAGTCCGTCTACAAAACCAGACAGAGCCAAGGATGCAGATATCGAGTTCTATGCCCCGGTACCGGGGGCCTGTGCACTGTGCAGCCTCCATCTTGAGAGAAGAAGGACCCCAGGGACTGTTCAGAGGATCCTGGGCCCTGGTGTTGAGAGACACTCCTACGTTAGGAATGTACTTTGTCACCTATGAAGGGCTATGTCGCCAGTAC-ACACCAGAAGGCCAGAATCCCa attgtcatgcagttttgaggcctaagcttttttctaactatcttttgcagGCCTACTGCCTTGCTCCCTTTGATCTCATAAGGGTCCATCTACAAAATCAGACAGAGTCCAGGATCCAGATATCTAGTTCCATGCCCCGGTATCGGGGTCCTGTCCACTGCGCAGCTTCAGTCCTGAGAGAGGAAGGACCCCAGGGACTGTTCAGAGGATCGTGGGCTTTGGTCTTGAGAGACACCCCTACATTAGGCATGTACTTTGTCACTTATGAAGGGCTATGTCGCCAGTATCACACCAGGGGGCCAAAATCCCagtgagtcaggtcattcccattcaatttggacaatgagctgtacccactga Alignment from CESAR GCCTACTGCCTGGCTCCTTTTGACCTCATCAAAGTCCGTCTACAAAACCAGACAGAGCCAAGGATGCAGATATCGAGTTCTATGCCCCGGTACCGGGGGCCTGTGCACTGTGCAGCCTCCATCTTGAGAGAAGAAGGACCCCAGGGACTGTTCAGAGGATCCTGGGCCCTGGTGTTGAGAGACACTCCTACGTTAGGAATGTACTTTGTCACCTATGAAGGGCTATGTCGCCAGTAC-ACACCAGAAGGCCAGAATCCCa attgtcatgcagttttgaggcctaagcttttttctaactatcttttgcagGCCTACTGCCTTGCTCCCTTTGATCTCATAAGGGTCCATCTACAAAATCAGACAGAGTCCAGGATCCAGATATCTAGTTCCATGCCCCGGTATCGGGGTCCTGTCCACTGCGCAGCTTCAGTCCTGAGAGAGGAAGGACCCCAGGGACTGTTCAGAGGATCGTGGGCTTTGGTCTTGAGAGACACCCCTACATTAGGCATGTACTTTGTCACTTATGAAGGGCTATGTCGCCAGTATCACACCAGGGGGCCAAAATCCCagtgagtcaggtcattcccattcaatttggacaatgagctgtacccactga Alignment from Spaln_aa2Genome GCCTACTGCCTGGCTCCTTTTGACCTCATCAAAGTCCGTCTACAAAACCAGACAGAGCCAAGGATGCAGATATCGAGTTCTATGCCCCGGTACCGGGGGCCTGTGCACTGTGCAGCCTCCATCTTGAGAGAAGAAGGACCCCAGGGACTGTTCAGAGGATCCTGGGCCCTGGTGTTGAGAGACACTCCTACGTTAGGAATGTACTTTGTCACCTATGAAGGGCTATGTCGCCAGTAC-ACACCAGAAGGCCAGAATCCCA attgtcatgcagttttgaggcctaagcttttttctaactatcttttgcagGCCTACTGCCTTGCTCCCTTTGATCTCATAAGGGTCCATCTACAAAATCAGACAGAGTCCAGGATCCAGATATCTAGTTCCATGCCCCGGTATCGGGGTCCTGTCCACTGCGCAGCTTCAGTCCTGAGAGAGGAAGGACCCCAGGGACTGTTCAGAGGATCGTGGGCTTTGGTCTTGAGAGACACCCCTACATTAGGCATGTACTTTGTCACTTATGAAGGGCTATGTCGCCAGTATcACACCAGGGGGCCAAAATCCCAgtgagtcaggtcattcccattcaatttggacaatgagctgtacccactga Alignment from Spaln_nt2Genome GCCTACTGCCTGGCTCCTTTTGACCTCATCAAAGTCCGTCTACAAAACCAGACAGAGCCAAGGATGCAGATATCGAGTTCTATGCCCCGGTACCGGGGGCCTGTGCACTGTGCAGCCTCCATCTTGAGAGAAGAAGGACCCCAGGGACTGTTCAGAGGATCCTGGGCCCTGGTGTTGAGAGACACTCCTACGTTAGGAATGTACTTTGTCACCTATGAAGGGCTATGTCGCCAGTA-CACACCAGAAGGCCAGAATCCCA attgtcatgcagttttgaggcctaagcttttttctaactatcttttgcagGCCTACTGCCTTGCTCCCTTTGATCTCATAAGGGTCCATCTACAAAATCAGACAGAGTCCAGGATCCAGATATCTAGTTCCATGCCCCGGTATCGGGGTCCTGTCCACTGCGCAGCTTCAGTCCTGAGAGAGGAAGGACCCCAGGGACTGTTCAGAGGATCGTGGGCTTTGGTCTTGAGAGACACCCCTACATTAGGCATGTACTTTGTCACTTATGAAGGGCTATGTCGCCAGTATCACACCAGGGGGCCAAAATCCCAgtgagtcaggtcattcccattcaatttggacaatgagctgtacccactga Alignment from Pairagon GCCTACTGCCTGGCTCCTTTTGACCTCATCAAAGTCCGTCTACAAAACCAGACAGAGCCAAGGATGCAGATATCGAGTTCTATGCCCCGGTACCGGGGGCCTGTGCACTGTGCAGCCTCCATCTTGAGAGAAGAAGGACCCCAGGGACTGTTCAGAGGATCCTGGGCCCTGGTGTTGAGAGACACTCCTACGTTAGGAATGTACTTTGTCACCTATGAAGGGCTATGTCGCCAGTA-CACACCAGAAGGCCAGAATCCCA attgtcatgcagttttgaggcctaagcttttttctaactatcttttgcagGCCTACTGCCTTGCTCCCTTTGATCTCATAAGGGTCCATCTACAAAATCAGACAGAGTCCAGGATCCAGATATCTAGTTCCATGCCCCGGTATCGGGGTCCTGTCCACTGCGCAGCTTCAGTCCTGAGAGAGGAAGGACCCCAGGGACTGTTCAGAGGATCGTGGGCTTTGGTCTTGAGAGACACCCCTACATTAGGCATGTACTTTGTCACTTATGAAGGGCTATGTCGCCAGTATCACACCAGGGGGCCAAAATCCCAgtgagtcaggtcattcccattcaatttggacaatgagctgtacccactga Alignment from Exonerate_protein2genome GCCTACTGCCTGGCTCCTTTTGACCTCATCAAAGTCCGTCTACAAAACCAGACAGAGCCAAGGATGCAGATATCGAGTTCTATGCCCCGGTACCGGGGGCCTGTGCACTGTGCAGCCTCCATCTTGAGAGAAGAAGGACCCCAGGGACTGTTCAGAGGATCCTGGGCCCTGGTGTTGAGAGACACTCCTACGTTAGGAATGTACTTTGTCACCTATGAAGGGCTATGTCGCCAGTAC-ACACCAGAAGGCCAGAATCCCA attgtcatgcagttttgaggcctaagcttttttctaactatcttttgcagGCCTACTGCCTTGCTCCCTTTGATCTCATAAGGGTCCATCTACAAAATCAGACAGAGTCCAGGATCCAGATATCTAGTTCCATGCCCCGGTATCGGGGTCCTGTCCACTGCGCAGCTTCAGTCCTGAGAGAGGAAGGACCCCAGGGACTGTTCAGAGGATCGTGGGCTTTGGTCTTGAGAGACACCCCTACATTAGGCATGTACTTTGTCACTTATGAAGGGCTATGTCGCCAGTATCACACCAGGGGGCCAAAATCCCAgtgagtcaggtcattcccattcaatttggacaatgagctgtacccactga Alignment from Exonerate_coding2genome GCCTACTGCCTGGCTCCTTTTGACCTCATCAAAGTCCGTCTACAAAACCAGACAGAGCCAAGGATGCAGATATCGAGTTCTATGCCCCGGTACCGGGGGCCTGTGCACTGTGCAGCCTCCATCTTGAGAGAAGAAGGACCCCAGGGACTGTTCAGAGGATCCTGGGCCCTGGTGTTGAGAGACACTCCTACGTTAGGAATGTACTTTGTCACCTATGAAGGGCTATGTCGCCAGTAC-ACACCAGAAGGCCAGAATCCCA attgtcatgcagttttgaggcctaagcttttttctaactatcttttgcagGCCTACTGCCTTGCTCCCTTTGATCTCATAAGGGTCCATCTACAAAATCAGACAGAGTCCAGGATCCAGATATCTAGTTCCATGCCCCGGTATCGGGGTCCTGTCCACTGCGCAGCTTCAGTCCTGAGAGAGGAAGGACCCCAGGGACTGTTCAGAGGATCGTGGGCTTTGGTCTTGAGAGACACCCCTACATTAGGCATGTACTTTGTCACTTATGAAGGGCTATGTCGCCAGTATCACACCAGGGGGCCAAAATCCCAgtgagtcaggtcattcccattcaatttggacaatgagctgtacccactga Alignment from GeneWise GCCTACTGCCTGGCTCCTTTTGACCTCATCAAAGTCCGTCTACAAAACCAGACAGAGCCAAGGATGCAGATATCGAGTTCTATGCCCCGGTACCGGGGGCCTGTGCACTGTGCAGCCTCCATCTTGAGAGAAGAAGGACCCCAGGGACTGTTCAGAGGATCCTGGGCCCTGGTGTTGAGAGACACTCCTACGTTAGGAATGTACTTTGTCACCTATGAAGGGCTATGTCGCCAGTAC-ACACCAGAAGGCCAGAATCCCA attgtcatgcagttttgaggcctaagcttttttctaactatcttttgcagGCCTACTGCCTTGCTCCCTTTGATCTCATAAGGGTCCATCTACAAAATCAGACAGAGTCCAGGATCCAGATATCTAGTTCCATGCCCCGGTATCGGGGTCCTGTCCACTGCGCAGCTTCAGTCCTGAGAGAGGAAGGACCCCAGGGACTGTTCAGAGGATCGTGGGCTTTGGTCTTGAGAGACACCCCTACATTAGGCATGTACTTTGTCACTTATGAAGGGCTATGTCGCCAGTATCACACCAGGGGGCCAAAATCCCAgtgagtcaggtcattcccattcaatttggacaatgagctgtacccactga #### Slc29a2_ID789_3 --> 0 - 2 Original Alignment TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTC-CTCAACTCCTTCCTGTATCAGtg cagggttattttctgagaagctccctgtccaaatgcgttcttgatttcagTACCTCCGGGGACGGTTGGCAGGTACTAACAGCAGTGCTGAGACCATCAGCACAAACCACACCAGCCCCACCGATGCATCGAATGTCAACAATTGGGTGACACTGCTATCCCAGTTGCCTCTACTGCTGTTCACACTGCCTCAACTCCTTCCTGTATCAGtggcaagcaccacatatagccaatccctcgacaatcattatcaggcacctca Alignment from CESAR TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTC-CTCAACTCCTTCCTGTATCAGtg cagggttattttctgagaagctccctgtccaaatgcgttcttgatttcagTACCTCCGGGGACGGTTGGCAGGTACTAACAGCAGTGCTGAGACCATCAGCACAAACCACACCAGCCCCACCGATGCATCGAATGTCAACAATTGGGTGACACTGCTATCCCAGTTGCCTCTACTGCTGTTCACACTGCCTCAACTCCTTCCTGTATCAGtggcaagcaccacatatagccaatccctcgacaatcattatcaggcacctca Alignment from Spaln_aa2Genome TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTC-CTCAACTCCTTCCTGTATCAGTG cagggttattttctgagaagctccctgtccaaatgcgttcttgatttcagTACCTCCGGGGACGGTTGGCAGGTACTAACAGCAGTGCTGAGACCATCAGCACAAACCACACCAGCCCCACCGATGCATCGAATGTCAACAATTGGGTGACACTGCTATCCCAGTTGCCTCTACTGCTGTTCACACTGcCTCAACTCCTTCCTGTATCAGTGgcaagcaccacatatagccaatccctcgacaatcattatcaggcacctca Alignment from Spaln_nt2Genome TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCT-CCTCAACTCCTTCCTGTATCAGTG cagggttattttctgagaagctccctgtccaaatgcgttcttgatttcagTACCTCCGGGGACGGTTGGCAGGTACTAACAGCAGTGCTGAGACCATCAGCACAAACCACACCAGCCCCACCGATGCATCGAATGTCAACAATTGGGTGACACTGCTATCCCAGTTGCCTCTACTGCTGTTCACACTGCCTCAACTCCTTCCTGTATCAGTGgcaagcaccacatatagccaatccctcgacaatcattatcaggcacctca Alignment from Pairagon TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCT-CCTCAACTCCTTCCTGTATCAGTG cagggttattttctgagaagctccctgtccaaatgcgttcttgatttcagTACCTCCGGGGACGGTTGGCAGGTACTAACAGCAGTGCTGAGACCATCAGCACAAACCACACCAGCCCCACCGATGCATCGAATGTCAACAATTGGGTGACACTGCTATCCCAGTTGCCTCTACTGCTGTTCACACTGCCTCAACTCCTTCCTGTATCAGTGgcaagcaccacatatagccaatccctcgacaatcattatcaggcacctca Alignment from Exonerate_protein2genome TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTC-CTCAACTCCTTCCTGTATCAGTG cagggttattttctgagaagctccctgtccaaatgcgttcttgatttcagTACCTCCGGGGACGGTTGGCAGGTACTAACAGCAGTGCTGAGACCATCAGCACAAACCACACCAGCCCCACCGATGCATCGAATGTCAACAATTGGGTGACACTGCTATCCCAGTTGCCTCTACTGCTGTTCACACTGCCTCAACTCCTTCCTGTATCAGTGgcaagcaccacatatagccaatccctcgacaatcattatcaggcacctca Alignment from Exonerate_coding2genome TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTC-CTCAACTCCTTCCTGTATCAGTG cagggttattttctgagaagctccctgtccaaatgcgttcttgatttcagTACCTCCGGGGACGGTTGGCAGGTACTAACAGCAGTGCTGAGACCATCAGCACAAACCACACCAGCCCCACCGATGCATCGAATGTCAACAATTGGGTGACACTGCTATCCCAGTTGCCTCTACTGCTGTTCACACTGCCTCAACTCCTTCCTGTATCAGTGgcaagcaccacatatagccaatccctcgacaatcattatcaggcacctca Alignment from GeneWise TACTTCCAGGGGCGGTTAGCAGGGACCAACAGCAGTGCTGAGACCATGGGCACCAACCACACCAGTCCCACAGACACTTTCAACTTCAACAACTGGGTGACACTGCTGTCCCAGCTGCCTCTACTGCTCTTCACGCTC-CTCAACTCCTTCCTGTATCA cagggttattttctgagaagctccctgtccaaatgcgttcttgatttcagTACCTCCGGGGACGGTTGGCAGGTACTAACAGCAGTGCTGAGACCATCAGCACAAACCACACCAGCCCCACCGATGCATCGAATGTCAACAATTGGGTGACACTGCTATCCCAGTTGCCTCTACTGCTGTTCACACTGCCTCAACTCCTTCCTGTATCAgtggcaagcaccacatatagccaatccctcgacaatcattatcaggcacctca #### Slc29a2_ID794_8 --> 2 - 0 Original Alignment atGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCT-GAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG cctaatgaatatccttaatgccatatgtcatgtactgtgtaaccttgcagatGCAAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCTAGTCCAACTCTTGAGCTCGACCCCCGAGAGGGAGCCAGAACCAGAGCAGCCACAGAAACCAGGAAAACCCTCAGTCTTTGTGGTTTTCCGGAAAgtgagctaccatgtacagccaggggtgggggcagagggttgcctggtgca Alignment from CESAR atGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGAC-CCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG cctaatgaatatccttaatgccatatgtcatgtactgtgtaaccttgcagatGCAAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCTAGTCCAACTCTTGAGCTCGACCCCCGAGAGGGAGCCAGAACCAGAGCAGCCACAGAAACCAGGAAAACCCTCAGTCTTTGTGGTTTTCCGGAAAgtgagctaccatgtacagccaggggtgggggcagagggttgcctggtgca Alignment from Spaln_aa2Genome ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGAC-CCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG cctaatgaatatccttaatgccatatgtcatgtactgtgtaaccttgcagATGCAAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCTAGTCCAACTCTTGAGCTCGACcCCCGAGAGGGAGCCAGAACCAGAGCAGCCACAGAAACCAGGAAAACCCTCAGTCTTTGTGGTTTTCCGGAAAgtgagctaccatgtacagccaggggtgggggcagagggttgcctggtgca Alignment from Spaln_nt2Genome ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCT-GAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG cctaatgaatatccttaatgccatatgtcatgtactgtgtaaccttgcagATGCAAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCTAGTCCAACTCTTGAGCTCGACCCCCGAGAGGGAGCCAGAACCAGAGCAGCCACAGAAACCAGGAAAACCCTCAGTCTTTGTGGTTTTCCGGAAAgtgagctaccatgtacagccaggggtgggggcagagggttgcctggtgca Alignment from Pairagon ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGA-CCCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG cctaatgaatatccttaatgccatatgtcatgtactgtgtaaccttgcagATGCAAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCTAGTCCAACTCTTGAGCTCGACCCCCGAGAGGGAGCCAGAACCAGAGCAGCCACAGAAACCAGGAAAACCCTCAGTCTTTGTGGTTTTCCGGAAAgtgagctaccatgtacagccaggggtgggggcagagggttgcctggtgca Alignment from Exonerate_protein2genome ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGAC-CCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG cctaatgaatatccttaatgccatatgtcatgtactgtgtaaccttgcagATGCAAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCTAGTCCAACTCTTGAGCTCGACCCCCGAGAGGGAGCCAGAACCAGAGCAGCCACAGAAACCAGGAAAACCCTCAGTCTTTGTGGTTTTCCGGAAAgtgagctaccatgtacagccaggggtgggggcagagggttgcctggtgca Alignment from Exonerate_coding2genome ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGAC-CCTGAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG cctaatgaatatccttaatgccatatgtcatgtactgtgtaaccttgcagATGCAAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCTAGTCCAACTCTTGAGCTCGACCCCCGAGAGGGAGCCAGAACCAGAGCAGCCACAGAAACCAGGAAAACCCTCAGTCTTTGTGGTTTTCCGGAAAgtgagctaccatgtacagccaggggtgggggcagagggttgcctggtgca Alignment from GeneWise ATGAGAAGAATGGGGTTCCCATCAGCCCCCAACAGGCCAGCCCAACTCTGGATCTTGACCCT-GAGAAGGAGCCAGAGCCGGAGGAGCCACAGAAGCCAGGAAAACCTTCAGTCTTTGTTGTCTTCCGGAAG cctaatgaatatccttaatgccatatgtcatgtactgtgtaaccttgcagATGCAAAGAATGGGGTTCCTGTCAGTCCTCAGCAGGCTAGTCCAACTCTTGAGCTCGACCCCCGAGAGGGAGCCAGAACCAGAGCAGCCACAGAAACCAGGAAAACCCTCAGTCTTTGTGGTTTTCCGGAAAgtgagctaccatgtacagccaggggtgggggcagagggttgcctggtgca #### Slc29a2_ID795_9 --> 0 - 1 Original Alignment ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACA-GCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGg tgcaatggagacttccacggctacccagcctgcttctcttctctcttcagATCTGGCTGACAGCACTGTGCCTTGTGTTAGTCTTCACAGTAACCCTATCTGTTTTTCCTGCTATCACACGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGggtgggcactggtgatagttcacagcatggaacaggggagccagacctctc Alignment from CESAR ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACA-GCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGg tgcaatggagacttccacggctacccagcctgcttctcttctctcttcagATCTGGCTGACAGCACTGTGCCTTGTGTTAGTCTTCACAGTAACCCTATCTGTTTTTCCTGCTATCACACGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGggtgggcactggtgatagttcacagcatggaacaggggagccagacttaag Alignment from Spaln_aa2Genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACA-GCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaatggagacttccacggctacccagcctgcttctcttctctcttcagATCTGGCTGACAGCACTGTGCCTTGTGTTAGTCTTCACAGTAACCCTATCTGTTTTTCCTGCTATCACAcGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtgggcactggtgatagttcacagcatggaacaggggagccagacctctc Alignment from Spaln_nt2Genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACA-GCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaatggagacttccacggctacccagcctgcttctcttctctcttcagATCTGGCTGACAGCACTGTGCCTTGTGTTAGTCTTCACAGTAACCCTATCTGTTTTTCCTGCTATCACACGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtgggcactggtgatagttcacagcatggaacaggggagccagacctctc Alignment from Pairagon ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACA-GCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaatggagacttccacggctacccagcctgcttctcttctctcttcagATCTGGCTGACAGCACTGTGCCTTGTGTTAGTCTTCACAGTAACCCTATCTGTTTTTCCTGCTATCACACGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtgggcactggtgatagttcacagcatggaacaggggagccagacctctc Alignment from Exonerate_protein2genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACA-GCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaatggagacttccacggctacccagcctgcttctcttctctcttcagATCTGGCTGACAGCACTGTGCCTTGTGTTAGTCTTCACAGTAACCCTATCTGTTTTTCCTGCTATCACACGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtgggcactggtgatagttcacagcatggaacaggggagccagacctctc Alignment from Exonerate_coding2genome ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACA-GCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaatggagacttccacggctacccagcctgcttctcttctctcttcagATCTGGCTGACAGCACTGTGCCTTGTGTTAGTCTTCACAGTAACCCTATCTGTTTTTCCTGCTATCACACGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtgggcactggtgatagttcacagcatggaacaggggagccagacctctc Alignment from GeneWise ATCTGGCTGACGGCGCTGTGCCTTGTGTTGGTCTTCACAGTCACCCTGTCGGTCTTTCCTGCCATCACA-GCCATGGTGACCACCAGCTCCAATAGCCCCGGGAAGTGGG tgcaatggagacttccacggctacccagcctgcttctcttctctcttcagATCTGGCTGACAGCACTGTGCCTTGTGTTAGTCTTCACAGTAACCCTATCTGTTTTTCCTGCTATCACACGCCATGGTGACCACCAGCTCCAATAGCCCTGGGAAATGGGgtgggcactggtgatagttcacagcatggaacaggggagccagacctctc #### Slc29a2_ID796_10 --> 2 - 0 Original Alignment gtCTGTTCTTCAACCCTATCTGTTGCTTT-CTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagacttaagttatttttgttttaggtCTGTTCTTCAACCCTATCTGTTGCTTTCCTGCTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtaagtgtctgggccagagcagcattacctagaagactagataacatgaa Alignment from CESAR gtCTGTTCTTCAACCCTATCTGTTGCTTT-CTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagacttaagttatttttgttttaggtCTGTTCTTCAACCCTATCTGTTGCTTTCCTGCTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtaagtgtctgggccagagcagcattacctagaagactagataacatgaa Alignment from Spaln_aa2Genome GTCTGTTCTTCAACCCTATCTGTTGC-TTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagacttaagttatttttgttttagGTCTGTTCTTCAACCCTATCTGTTGCtTTCCTGCTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtaagtgtctgggccagagcagcattacctagaagactagataacatgaa Alignment from Spaln_nt2Genome GTCTGTTCTTCAACCCTATCTGTTGC-TTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagacttaagttatttttgttttagGTCTGTTCTTCAACCCTATCTGTTGCTTTCCTGCTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtaagtgtctgggccagagcagcattacctagaagactagataacatgaa Alignment from Pairagon GTCTGTTCTTCAACCCTATCTGTTGCTTT-CTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagacttaagttatttttgttttagGTCTGTTCTTCAACCCTATCTGTTGCTTTCCTGCTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtaagtgtctgggccagagcagcattacctagaagactagataacatgaa Alignment from Exonerate_protein2genome GTCTGTTCTTCAACCCTATCTGTTGC-TTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagacttaagttatttttgttttagGTCTGTTCTTCAACCCTATCTGTTGCTTTCCTGCTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtaagtgtctgggccagagcagcattacctagaagactagataacatgaa Alignment from Exonerate_coding2genome GTCTGTTCTTCAACCCTATCTGTTGC-TTTCTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagacttaagttatttttgttttagGTCTGTTCTTCAACCCTATCTGTTGCTTTCCTGCTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtaagtgtctgggccagagcagcattacctagaagactagataacatgaa Alignment from GeneWise GTCTGTTCTTCAACCCTATCTGTTGCTTT-CTGCTCTTCAACGTCATGGATTGGCTGGGCCGGAGCCTGACCTCCTACTTCCTGTGG agttcacagcatggaacaggggagccagacttaagttatttttgttttagGTCTGTTCTTCAACCCTATCTGTTGCTTTCCTGCTCTTCAACGTCATGGATTGGTTGGGCCGGAGCCTGACCTCCTACTTCCTGTGGgtaagtgtctgggccagagcagcattacctagaagactagataacatgaa #### Slc3a2_ID2302_7 --> 1 - 0 Original Alignment gCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTAC-CTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT atcttatccctcaccgtgtactgtcacactgcatggatttctcgttttagaCTTTTAATTGCAGGGACTGAAACCTCGGACCTGCCACAGATTCTCAATATACTAGAGTCCACTAGTGACCTGCTATTGACTAGCTCCTACCCTTTCAAATTCTACATACACTGGGGAACGCACAGAGTCTTTAGTAACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTgtatgtgccttgatgagcagcctagacctgtaagtgtgggtcaggggggg Alignment from CESAR gCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTAC-CTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT atcttatccctcaccgtgtactgtcacactgcatggatttctcgttttagaCTTTTAATTGCAGGGACTGAAACCTCGGACCTGCCACAGATTCTCAATATACTAGAGTCCACTAGTGACCTGCTATTGACTAGCTCCTACCCTTTCAAATTCTACATACACTGGGGAACGCACAGAGTCTTTAGTAACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTgtatgtgccttgatgagcagcctagacctgtaagtgtgggtcaggggggg Alignment from Spaln_aa2Genome GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTAC-CTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT atcttatccctcaccgtgtactgtcacactgcatggatttctcgttttagACTTTTAATTGCAGGGACTGAAACCTCGGACCTGCCACAGATTCTCAATATACTAGAGTCCACTAGTGACCTGCTATTGACTAGCTCCTACcCTTTCAAATTCTACATACACTGGGGAACGCACAGAGTCTTTAGTAACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTgtatgtgccttgatgagcagcctagacctgtaagtgtgggtcaggggggg Alignment from Spaln_nt2Genome GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTA-CCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT atcttatccctcaccgtgtactgtcacactgcatggatttctcgttttagACTTTTAATTGCAGGGACTGAAACCTCGGACCTGCCACAGATTCTCAATATACTAGAGTCCACTAGTGACCTGCTATTGACTAGCTCCTACCCTTTCAAATTCTACATACACTGGGGAACGCACAGAGTCTTTAGTAACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTgtatgtgccttgatgagcagcctagacctgtaagtgtgggtcaggggggg Alignment from Pairagon GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTA-CCTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT atcttatccctcaccgtgtactgtcacactgcatggatttctcgttttagACTTTTAATTGCAGGGACTGAAACCTCGGACCTGCCACAGATTCTCAATATACTAGAGTCCACTAGTGACCTGCTATTGACTAGCTCCTACCCTTTCAAATTCTACATACACTGGGGAACGCACAGAGTCTTTAGTAACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTgtatgtgccttgatgagcagcctagacctgtaagtgtgggtcaggggggg Alignment from Exonerate_protein2genome GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTAC-CTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT atcttatccctcaccgtgtactgtcacactgcatggatttctcgttttagACTTTTAATTGCAGGGACTGAAACCTCGGACCTGCCACAGATTCTCAATATACTAGAGTCCACTAGTGACCTGCTATTGACTAGCTCCTACCCTTTCAAATTCTACATACACTGGGGAACGCACAGAGTCTTTAGTAACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTgtatgtgccttgatgagcagcctagacctgtaagtgtgggtcaggggggg Alignment from Exonerate_coding2genome GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTAC-CTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT atcttatccctcaccgtgtactgtcacactgcatggatttctcgttttagACTTTTAATTGCAGGGACTGAAACCTCGGACCTGCCACAGATTCTCAATATACTAGAGTCCACTAGTGACCTGCTATTGACTAGCTCCTACCCTTTCAAATTCTACATACACTGGGGAACGCACAGAGTCTTTAGTAACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTgtatgtgccttgatgagcagcctagacctgtaagtgtgggtcaggggggg Alignment from GeneWise GCTTTTGATTGCAGGGACTGAGTCCTCTGACCTGCAGCAAATTGTCAACATACTTGAATCCACCAGCGACCTGCTGTTGACCAGCTCCTAC-CTGTCAAATTCCACTTTCACTGGGGAGCGTACTGAATCCCTAGTCACTAGGTTTTTGAATGCCACTGGCAGCCAATGGTGCAGCTGGAGT atcttatccctcaccgtgtactgtcacactgcatggatttctcgttttagACTTTTAATTGCAGGGACTGAAACCTCGGACCTGCCACAGATTCTCAATATACTAGAGTCCACTAGTGACCTGCTATTGACTAGCTCCTACCCTTTCAAATTCTACATACACTGGGGAACGCACAGAGTCTTTAGTAACTAGTTTTTTGAACACAACTGGCAGTCAATGGTGCAGCTGGAGTgtatgtgccttgatgagcagcctagacctgtaagtgtgggtcaggggggg #### Slc3a2_ID2303_6 --> 0 - 2 Original Alignment AATGCACCCTTGTACTTG-GCTGAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACag ccttggtaggttcatgttctgtgtgcaaagttcttgatgtttgtttccagAATGCACCCTTGTACTTACGCAGAGTGGCAGAACATCTCCAAGAACCTT---GAAGACaggtgaggatgcagcagtgcattctagtaactccctctaagcactctttgaa Alignment from CESAR AATGCACCCTTGTACTTG-GCTGAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACag ccttggtaggttcatgttctgtgtgcaaagttcttgatgtttgtttccagAATGCACCCTTGTACTTACGCAGAGTGGCAGAACATCTCCAAGAACCTT---GAAGACaggtgaggatgcagcagtgcattctagtaactccctctaagcactctttgaa Alignment from Spaln_aa2Genome AATGCACCCTTGTACTTG-GCTGAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACAG ccttggtaggttcatgttctgtgtgcaaagttcttgatgtttgtttccagAATGCACCCTTGTACTTAcGCAGAGTGGCAGAACATCTCCAAGAACCTT---GAAGACAGgtgaggatgcagcagtgcattctagtaactccctctaagcactctttgaa Alignment from Spaln_nt2Genome AATGCACCCTTGTACTTG-GCTGAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACAG ccttggtaggttcatgttctgtgtgcaaagttcttgatgtttgtttccagAATGCACCCTTGTACTTACGCAGAGTGGCAGAACATCTCCAAGAACCT---TGAAGACAGgtgaggatgcagcagtgcattctagtaactccctctaagcactctttgaa Alignment from Pairagon AATGCACCCTTGTACTTG-GCTGAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACAG ccttggtaggttcatgttctgtgtgcaaagttcttgatgtttgtttccagAATGCACCCTTGTACTTACGCAGAGTGGCAGAACATCTCCAAGAACCT---TGAAGACAGgtgaggatgcagcagtgcattctagtaactccctctaagcactctttgaa Alignment from Exonerate_protein2genome AATGCACCCTTGTACTTG-GCTGAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACAG ccttggtaggttcatgttctgtgtgcaaagttcttgatgtttgtttccagAATGCACCCTTGTACTTACGCAGAGTGGCAGAACATCTCCAAGAACCTT---GAAGACAGgtgaggatgcagcagtgcattctagtaactccctctaagcactctttgaa Alignment from Exonerate_coding2genome AATGCACCCTTGTACTTG-GCTGAGTGGCAGAATATCACCAAGAACTTAAGTGAGGACAG ccttggtaggttcatgttctgtgtgcaaagttcttgatgtttgtttccagAATGCACCCTTGTACTTACGCAGAGTGGCAGAACATCTCCAAGAACCTT---GAAGACAGgtgaggatgcagcagtgcattctagtaactccctctaagcactctttgaa Alignment from GeneWise ccttggtaggttcatgttctgtgtgcaaagttcttgatgtttgtttccagaatgcacccttgtacttacgcagagtggcagaacatctccaagaaccttgaagacaggtgaggatgcagcagtgcattctagtaactccctctaagcactctttgaa #### Slit1_ID8222_17 --> 1 - 2 Original Alignment aCGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTT-AAGAAGCTCTCACATCTGAAGAAAat aAACCTGAGCAATAAC ttagatgggggagggagctaggtgttaaaaacgcttttccttttttgtagtCGACTAAACAACAATGAGATCTCTATCCTAGAGGCCACTGGGTTGTTTCAGGAAGCTCACACATCTGGAGAAAatgtaagtaactgttactttctttttaactccgtagaAACCTCTGTAATAAC Alignment from CESAR aCGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTT-AAGAAGCTCTCACATCTGAAGAAAat aAACCTGAGCAATAAC ttagatgggggagggagctaggtgttaaaaacgcttttccttttttgtagtCGACTAAACAACAATGAGATCTCTATCCTAGAGGCCACTGGGTTGTTTCAGGAAGCTCACACATCTGGAGAAAatgtaagtaactgtctgataccccaatgctccccagaAACCTCTGTAATAAC Alignment from Spaln_aa2Genome ACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTT-AAGAAGCTCTCACATCTGAAGAAAAT AAACCTGAGCAATAAC ttagatgggggagggagctaggtgttaaaaacgcttttccttttttgtagTCGACTAAACAACAATGAGATCTCTATCCTAGAGGCCACTGGGTTGTTTcAGGAAGCTCACACATCTGGAGAAAATgtaagtaactgttactttctttttaactccgtagAAACCTCTGTAATAAC Alignment from Spaln_nt2Genome ACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTTAAG-AAGCTCTCACATCTGAAGAAAAT AAACCTGAGCAATAAC ttagatgggggagggagctaggtgttaaaaacgcttttccttttttgtagTCGACTAAACAACAATGAGATCTCTATCCTAGAGGCCACTGGGTTGTTTCAGGAAGCTCACACATCTGGAGAAAATgtaagtaactgttactttctttttaactccgtagAAACCTCTGTAATAAC Alignment from Pairagon ACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTT-AAGAAGCTCTCACATCTGAAGAAAAT AAACCTGAGCAATAAC ttagatgggggagggagctaggtgttaaaaacgcttttccttttttgtagTCGACTAAACAACAATGAGATCTCTATCCTAGAGGCCACTGGGTTGTTTCAGGAAGCTCACACATCTGGAGAAAATgtaagtaactgttactttctttttaactccgtagAAACCTCTGTAATAAC Alignment from Exonerate_protein2genome ACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTG-TTTAAGAAGCTCTCACATCTGAAGAAAAT AAACCTGAGCAATAAC ttagatgggggagggagctaggtgttaaaaacgcttttccttttttgtagTCGACTAAACAACAATGAGATCTCTATCCTAGAGGCCACTGGGTTGTTTCAGGAAGCTCACACATCTGGAGAAAATgtaagtaactgttactttctttttaactccgtagAAACCTCTGTAATAAC Alignment from Exonerate_coding2genome ACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTG-TTTAAGAAGCTCTCACATCTGAAGAAAAT AAACCTGAGCAATAAC ttagatgggggagggagctaggtgttaaaaacgcttttccttttttgtagTCGACTAAACAACAATGAGATCTCTATCCTAGAGGCCACTGGGTTGTTTCAGGAAGCTCACACATCTGGAGAAAATgtaagtaactgttactttctttttaactccgtagAAACCTCTGTAATAAC Alignment from GeneWise ACGACTGAACAACAATGAGATTTCTATCCTAGAGGCCACTGGGTTGTTT-AAGAAGCTCTCACATCTGAAGAAAAT AAACCTGAGCAATAAC ttagatgggggagggagctaggtgttaaaaacgcttttccttttttgtagTCGACTAAACAACAATGAGATCTCTATCCTAGAGGCCACTGGGTTGTTTCAGGAAGCTCACACATCTGGAGAAAATgtaagtaactgttactttctttttaactccgtagAAACCTCTGTAATAAC #### Slit1_ID8232_7 --> 1 - 2 Original Alignment gACCCTGAACAACAACAAC-ATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCtt cccttttaggcatgggtggccaggcaggacctctttgcttctcccctcagcCCACTCAATAATAATAACCATCAGCGCTATCCCC------CGTTTCAATCATATCCCTAAGCTCCACACTttgtacgacatcttggccattggcgcatcaccttgactgtggaaaaagcgta Alignment from CESAR gACCCTGAACAACAACAAC-ATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCtt cccttttaggcatgggtggccaggcaggacctctttgcttctcccctcagcCCACTCAATAATAATAACCATCAGCGCTATCCCC------CGTTTCAATCATATCCCTAAGCTCCACACTttgtacgacatcttggccattggcgcatcaccttgactgtggaaaaagcgta Alignment from Spaln_aa2Genome GACCCTGAACAACAACAAC-ATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT cccttttaggcatgggtggccaggcaggacctctttgcttctcccctcagCCCACTCAATAATAATAACcATCAGCGCTATCCCC------CGTTTCAATCATATCCCTAAGCTCCACACTTTgtacgacatcttggccattggcgcatcaccttgactgtggaaaaagcgta Alignment from Spaln_nt2Genome GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT cccttttaggcatgggtggccaggcaggacctctttgcttctcccctcagCCCACTCAATAATA-----ATAACCATCAGCGCTATCCCCCGTTTCAATCATATCCCTAAGCTCCACACTTTgtacgacatcttggccattggcgcatcaccttgactgtggaaaaagcgta Alignment from Pairagon GACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT cccttttaggcatgggtggccaggcaggacctctttgcttctcccctcagcccactcaataataataaccatcag------------------------------CGCTATCCCCCGTTTCAATCATATCCCTAAGCTCCACACTTTgtacgacatcttggccattggcgcatcaccttgactgtggaaaaagcgta Alignment from Exonerate_protein2genome TGAACAACAACAACATCACCACCATCCCTGTGTCCAGTTTCAACCATATGCCCAAGCTTCGGACCTT cccttttaggcatgggtggccaggcaggacctctttgcttctcccctcagCCCACTCAATAATAATAACCATCAGCGCTATCCCCCGTTTCAATCATATCCCTAAGCTCCACACTTTgtacgacatcttggccattggcgcatcaccttgactgtggaaaaagcgta Alignment from Exonerate_coding2genome cccttttaggcatgggtggccaggcaggacctctttgcttctcccctcagcccactcaataataataaccatcagcgctatcccccgtttcaatcatatccctaagctccacactttgtacgacatcttggccattggcgcatcaccttgactgtggaaaaagcgta Alignment from GeneWise -------CTGACCCTGAACAACAACAACATCACCACCATCCCTGTGTCCAGT---------TTCAACCATATGCCCAAGCTTCGGACCTT cccttttaggcatgggtggccaggcagGACCTCTTTGCTTCTCCCCTCAGCCCACTCAATAATAATAACCATCAGCGCTATCCCCCGTTTCAATCATATCCCTAAGCTCCACACTTTgtacgacatcttggccattggcgcatcaccttgactgtggaaaaagcgta #### Slk_ID10265_17 --> 0 - 0 Original Alignment TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAA-ATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG tgtagagggacaagatatgtttttctattcaaatttaatttgttttccagTTTGCTGCACAAGACAAAAAGCGAAAAAAAAATGAAAGGATGGCTCAACATCAAAAGCATGAAAGCCATCATGCGGGATCTACAGCTGCAATGTGAAGCTAATGTTCAGGAATTACATCAGTTGCCAgtaatgtttctaaaactggcatgacaagaaatgcatttgtattgcttgga Alignment from CESAR TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAA-ATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG tgtagagggacaagatatgtttttctattcaaatttaatttgttttccagTTTGCTGCACAAGACAAAAAGCGAAAAAAAAATGAAAGGATGGCTCAACATCAAAAGCATGAAAGCCATCATGCGGGATCTACAGCTGCAATGTGAAGCTAATGTTCAGGAATTACATCAGTTGCCAgtaatgtttctaaaactggcatgacaagaaatgcatttgtattgcttgga Alignment from Spaln_aa2Genome TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAA-ATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG tgtagagggacaagatatgtttttctattcaaatttaatttgttttccagTTTGCTGCACAAGACAAAAAGCGAAAAAAAAATGAAAGGATGGCTCAACATCAAAAGCATGAAAGCCATcATGCGGGATCTACAGCTGCAATGTGAAGCTAATGTTCAGGAATTACATCAGTTGCCAgtaatgtttctaaaactggcatgacaagaaatgcatttgtattgcttgga Alignment from Spaln_nt2Genome TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAA-ATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG tgtagagggacaagatatgtttttctattcaaatttaatttgttttccagTTTGCTGCACAAGACAAAAAGCGAAAAAAAAATGAAAGGATGGCTCAACATCAAAAGCATGAAAGCCATCATGCGGGATCTACAGCTGCAATGTGAAGCTAATGTTCAGGAATTACATCAGTTGCCAgtaatgtttctaaaactggcatgacaagaaatgcatttgtattgcttgga Alignment from Pairagon TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCA-AATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG tgtagagggacaagatatgtttttctattcaaatttaatttgttttccagTTTGCTGCACAAGACAAAAAGCGAAAAAAAAATGAAAGGATGGCTCAACATCAAAAGCATGAAAGCCATCATGCGGGATCTACAGCTGCAATGTGAAGCTAATGTTCAGGAATTACATCAGTTGCCAgtaatgtttctaaaactggcatgacaagaaatgcatttgtattgcttgga Alignment from Exonerate_protein2genome TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAA-ATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG tgtagagggacaagatatgtttttctattcaaatttaatttgttttccagTTTGCTGCACAAGACAAAAAGCGAAAAAAAAATGAAAGGATGGCTCAACATCAAAAGCATGAAAGCCATCATGCGGGATCTACAGCTGCAATGTGAAGCTAATGTTCAGGAATTACATCAGTTGCCAgtaatgtttctaaaactggcatgacaagaaatgcatttgtattgcttgga Alignment from Exonerate_coding2genome TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGCCAA-ATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG tgtagagggacaagatatgtttttctattcaaatttaatttgttttccagTTTGCTGCACAAGACAAAAAGCGAAAAAAAAATGAAAGGATGGCTCAACATCAAAAGCATGAAAGCCATCATGCGGGATCTACAGCTGCAATGTGAAGCTAATGTTCAGGAATTACATCAGTTGCCAgtaatgtttctaaaactggcatgacaagaaatgcatttgtattgcttgga Alignment from GeneWise TTTGCTGCACAAGAAGAAAAGAGACAGAAAAATGAGAGAATGGCTCAGCATCAAAAACATGAGAGC-CAAATGCGGGATCTTCAGTTGCAGTGTGAAGCCAATGTTCGGGAACTGCACCAGCTGCAG tgtagagggacaagatatgtttttctattcaaatttaatttgttttccagTTTGCTGCACAAGACAAAAAGCGAAAAAAAAATGAAAGGATGGCTCAACATCAAAAGCATGAAAGCCATCATGCGGGATCTACAGCTGCAATGTGAAGCTAATGTTCAGGAATTACATCAGTTGCCAgtaatgtttctaaaactggcatgacaagaaatgcatttgtattgcttgga #### Smc3_ID11318_6 --> 0 - 2 Original Alignment ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTA-GATAAGAAGATGGTCac ttgttctggttggccacctgggctctctccctgtaccttgtcacctccagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCTAAAAAGGATCTGTATTTTCTACGATCAGAAGATGGTCacgtaataattctttttgctcatagtgtgttacagatgatccagacaacata Alignment from CESAR ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTA-GATAAGAAGATGGTCac ttgttctggttggccacctgggctctctccctgtaccttgtcacctccagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCTAAAAAGGATCTGTATTTTCTACGATCAGAAGATGGTCacgtaataattctttttgctcatagtgtgttacagatgatccagacaacata Alignment from Spaln_aa2Genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTA-GATAAGAAGATGGTCAC ttgttctggttggccacctgggctctctccctgtaccttgtcacctccagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCTAAAAAGGATCTGTATTTTCTAcGATCAGAAGATGGTCACgtaataattctttttgctcatagtgtgttacagatgatccagacaacata Alignment from Spaln_nt2Genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTA-GATAAGAAGATGGTCAC ttgttctggttggccacctgggctctctccctgtaccttgtcacctccagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCTAAAAAGGATCTGTATTTTCTACGATCAGAAGATGGTCACgtaataattctttttgctcatagtgtgttacagatgatccagacaacata Alignment from Pairagon ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTA-GATAAGAAGATGGTCAC ttgttctggttggccacctgggctctctccctgtaccttgtcacctccagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCTAAAAAGGATCTGTATTTTCTACGATCAGAAGATGGTCACgtaataattctttttgctcatagtgtgttacagatgatccagacaacata Alignment from Exonerate_protein2genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTA-GATAAGAAGATGGTCAC ttgttctggttggccacctgggctctctccctgtaccttgtcacctccagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCTAAAAAGGATCTGTATTTTCTACGATCAGAAGATGGTCACgtaataattctttttgctcatagtgtgttacagatgatccagacaacata Alignment from Exonerate_coding2genome ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTA-GATAAGAAGATGGTCAC ttgttctggttggccacctgggctctctccctgtaccttgtcacctccagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCTAAAAAGGATCTGTATTTTCTACGATCAGAAGATGGTCACgtaataattctttttgctcatagtgtgttacagatgatccagacaacata Alignment from GeneWise ATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCCAAAAAGGATCAGTATTTCCTAGATAAGAAGATGGTCACGAAA ttgttctggttggccacctgggctctctccctgtaccttgtcacctccagATTGATAAAGAGGAAGTTTCACTTCGAAGAGTTATTGGTGCTAAAAAGGATCTGTATTTTCTA---CGATCAGAAGATGGTCACgtaataattctttttgctcatagtgtgttacagatgatccagacaacata #### Smc3_ID11323_11 --> 0 - 0 Original Alignment GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAA-AAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgtgatcccacaatccgtgcattatacttttccctccaataattctccagGATACGGAGCGCCAGGTCAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAACAAAGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAACTTAAGGCCAAAGATTTACATGTTGAGCTGGCTGGGAACAGTGAACAGCGCgtaagtcaccacacaagcaaaactgatcagatttcagtgtagtggagaag Alignment from CESAR GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAA-AAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgtgatcccacaatccgtgcattatacttttccctccaataattctccagGATACGGAGCGCCAGGTCAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAACAAAGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAACTTAAGGCCAAAGATTTACATGTTGAGCTGGCTGGGAACAGTGAACAGCGCgtaagtcaccacacaagcaaaactgatcagatttcagtgtagtggagaag Alignment from Spaln_aa2Genome GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAA-AAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgtgatcccacaatccgtgcattatacttttccctccaataattctccagGATACGGAGCGCCAGGTCAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAAcAAAGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAACTTAAGGCCAAAGATTTACATGTTGAGCTGGCTGGGAACAGTGAACAGCGCgtaagtcaccacacaagcaaaactgatcagatttcagtgtagtggagaag Alignment from Spaln_nt2Genome GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAA-AAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgtgatcccacaatccgtgcattatacttttccctccaataattctccagGATACGGAGCGCCAGGTCAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAACAAAGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAACTTAAGGCCAAAGATTTACATGTTGAGCTGGCTGGGAACAGTGAACAGCGCgtaagtcaccacacaagcaaaactgatcagatttcagtgtagtggagaag Alignment from Pairagon GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAA-AAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgtgatcccacaatccgtgcattatacttttccctccaataattctccagGATACGGAGCGCCAGGTCAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAACAAAGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAACTTAAGGCCAAAGATTTACATGTTGAGCTGGCTGGGAACAGTGAACAGCGCgtaagtcaccacacaagcaaaactgatcagatttcagtgtagtggagaag Alignment from Exonerate_protein2genome GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAA-AAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgtgatcccacaatccgtgcattatacttttccctccaataattctccagGATACGGAGCGCCAGGTCAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAACAAAGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAACTTAAGGCCAAAGATTTACATGTTGAGCTGGCTGGGAACAGTGAACAGCGCgtaagtcaccacacaagcaaaactgatcagatttcagtgtagtggagaag Alignment from Exonerate_coding2genome GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAA-AAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgtgatcccacaatccgtgcattatacttttccctccaataattctccagGATACGGAGCGCCAGGTCAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAACAAAGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAACTTAAGGCCAAAGATTTACATGTTGAGCTGGCTGGGAACAGTGAACAGCGCgtaagtcaccacacaagcaaaactgatcagatttcagtgtagtggagaag Alignment from GeneWise GATATTGAGCGCCAGGTTAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAA-AAAGAACAGCTTAGTGCTGAAAGACAAGAGCAGATTAAGCAAAGGACCAAGTTGGAGCTTAAAGCCAAGGATTTACAAGATGAGCTGGCGGGCAACAGTGAACAGCGG tgtgatcccacaatccgtgcattatacttttccctccaataattctccagGATACGGAGCGCCAGGTCAGAGAACTGAAAACAAAAATTTCAGCCATGAAAGAAGAACAAAGAACAGCTCAGTGCTGGAAGACAAGAACGGATTAAGCAAAGGACAAAGTTGGAACTTAAGGCCAAAGATTTACATGTTGAGCTGGCTGGGAACAGTGAACAGCGCgtaagtcaccacacaagcaaaactgatcagatttcagtgtagtggagaag #### Smc5_ID5110_21 --> 0 - 0 Original Alignment GTGGTTGAGGAGTACTCAAAAAGA-GAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tactttaatttcgttttatcccatgttacagccttgcccctccttctcagGTGGTTGAGAAGTATTCAAAGAGACGAAGTAGAGATTCAGCAATTGACTGAAGAACTGCAAGGTAAAAAAGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtaaggcataggcttttctggtgtcatgattgtgatgtgattacaaacta Alignment from CESAR GTGGTTGAGGAGTACTCAAAAAGA-GAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tactttaatttcgttttatcccatgttacagccttgcccctccttctcagGTGGTTGAGAAGTATTCAAAGAGACGAAGTAGAGATTCAGCAATTGACTGAAGAACTGCAAGGTAAAAAAGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtaaggcataggcttttctggtgtcatgattgtgatgtgattacaaacta Alignment from Spaln_aa2Genome GTGGTTGAGGAGTACTCAAAAAGA-GAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tactttaatttcgttttatcccatgttacagccttgcccctccttctcagGTGGTTGAGAAGTATTCAAAGAGAcGAAGTAGAGATTCAGCAATTGACTGAAGAACTGCAAGGTAAAAAAGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtaaggcataggcttttctggtgtcatgattgtgatgtgattacaaacta Alignment from Spaln_nt2Genome GTGGTTGAGGAGTACTCAAAAAGA-GAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tactttaatttcgttttatcccatgttacagccttgcccctccttctcagGTGGTTGAGAAGTATTCAAAGAGACGAAGTAGAGATTCAGCAATTGACTGAAGAACTGCAAGGTAAAAAAGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtaaggcataggcttttctggtgtcatgattgtgatgtgattacaaacta Alignment from Pairagon GTGGTTGAGGAGTACTCAAAAAGA-GAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tactttaatttcgttttatcccatgttacagccttgcccctccttctcagGTGGTTGAGAAGTATTCAAAGAGACGAAGTAGAGATTCAGCAATTGACTGAAGAACTGCAAGGTAAAAAAGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtaaggcataggcttttctggtgtcatgattgtgatgtgattacaaacta Alignment from Exonerate_protein2genome GTGGTTGAGGAGTACTCAAAAAGA-GAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tactttaatttcgttttatcccatgttacagccttgcccctccttctcagGTGGTTGAGAAGTATTCAAAGAGACGAAGTAGAGATTCAGCAATTGACTGAAGAACTGCAAGGTAAAAAAGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtaaggcataggcttttctggtgtcatgattgtgatgtgattacaaacta Alignment from Exonerate_coding2genome GTGGTTGAGGAGTACTCAAAAAGA-GAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tactttaatttcgttttatcccatgttacagccttgcccctccttctcagGTGGTTGAGAAGTATTCAAAGAGACGAAGTAGAGATTCAGCAATTGACTGAAGAACTGCAAGGTAAAAAAGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtaaggcataggcttttctggtgtcatgattgtgatgtgattacaaacta Alignment from GeneWise GTGGTTGAGGAGTACTCAAAAAGA-GAAGTAGAAATACAGCAGTTGACCGAAGAACTGCAGGGGAAGAAAGTTGAACTAGATGAATACAGGGAAAACATTTCGCAG tactttaatttcgttttatcccatgttacagccttgcccctccttctcagGTGGTTGAGAAGTATTCAAAGAGACGAAGTAGAGATTCAGCAATTGACTGAAGAACTGCAAGGTAAAAAAGTTGAACTAGATGAATATAGGGAAAACATTCTACAGgtaaggcataggcttttctggtgtcatgattgtgatgtgattacaaacta #### Smc5_ID5113_20 --> 0 - 0 Original Alignment GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCT-TCGTGCTTCACAGGACTGAATCCTTCG cactggtactctcatcacctttactggtttgctgtcctctgaccctatagGCATTCGAAGACCTCCCAAACACGTTGGATGAAATTGATGCATTATTAACTGCAGAAAGATCAAGAGCTCTCATGCTTCACAGGATTAAATCCTTCAgtaaggctccatatttttgctatacaccctatttccacatgactattttc Alignment from CESAR GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCT-TCGTGCTTCACAGGACTGAATCCTTCG cactggtactctcatcacctttactggtttgctgtcctctgaccctatagGCATTCGAAGACCTCCCAAACACGTTGGATGAAATTGATGCATTATTAACTGCAGAAAGATCAAGAGCTCTCATGCTTCACAGGATTAAATCCTTCAgtaaggctccatatttttgctatacaccctatttccacatgactattttc Alignment from Spaln_aa2Genome GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCT-TCGTGCTTCACAGGACTGAATCCTTCG cactggtactctcatcacctttactggtttgctgtcctctgaccctatagGCATTCGAAGACCTCCCAAACACGTTGGATGAAATTGATGCATTATTAACTGCAGAAAGATCAAGAGCTcTCATGCTTCACAGGATTAAATCCTTCAgtaaggctccatatttttgctatacaccctatttccacatgactattttc Alignment from Spaln_nt2Genome GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCT-TCGTGCTTCACAGGACTGAATCCTTCG cactggtactctcatcacctttactggtttgctgtcctctgaccctatagGCATTCGAAGACCTCCCAAACACGTTGGATGAAATTGATGCATTATTAACTGCAGAAAGATCAAGAGCTCTCATGCTTCACAGGATTAAATCCTTCAgtaaggctccatatttttgctatacaccctatttccacatgactattttc Alignment from Pairagon GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCT-TCGTGCTTCACAGGACTGAATCCTTCG cactggtactctcatcacctttactggtttgctgtcctctgaccctatagGCATTCGAAGACCTCCCAAACACGTTGGATGAAATTGATGCATTATTAACTGCAGAAAGATCAAGAGCTCTCATGCTTCACAGGATTAAATCCTTCAgtaaggctccatatttttgctatacaccctatttccacatgactattttc Alignment from Exonerate_protein2genome GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCT-TCGTGCTTCACAGGACTGAATCCTTCG cactggtactctcatcacctttactggtttgctgtcctctgaccctatagGCATTCGAAGACCTCCCAAACACGTTGGATGAAATTGATGCATTATTAACTGCAGAAAGATCAAGAGCTCTCATGCTTCACAGGATTAAATCCTTCAgtaaggctccatatttttgctatacaccctatttccacatgactattttc Alignment from Exonerate_coding2genome GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCT-TCGTGCTTCACAGGACTGAATCCTTCG cactggtactctcatcacctttactggtttgctgtcctctgaccctatagGCATTCGAAGACCTCCCAAACACGTTGGATGAAATTGATGCATTATTAACTGCAGAAAGATCAAGAGCTCTCATGCTTCACAGGATTAAATCCTTCAgtaaggctccatatttttgctatacaccctatttccacatgactattttc Alignment from GeneWise GCTTTTCAAGATCTCCCAAACACATTGGATGAAATCGATGCATTATTAACTGAAGAAAGGTCAAGAGCT-TCGTGCTTCACAGGACTGAATCCTTCG cactggtactctcatcacctttactggtttgctgtcctctgaccctatagGCATTCGAAGACCTCCCAAACACGTTGGATGAAATTGATGCATTATTAACTGCAGAAAGATCAAGAGCTCTCATGCTTCACAGGATTAAATCCTTCAgtaaggctccatatttttgctatacaccctatttccacatgactattttc #### Snx15_ID1469_3 --> 0 - 1 Original Alignment GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGTCGC-CTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTg cagtgtcttacccagctcttgctaaggtcttaatgcttttgctttaatagGTAGTCGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGGGACTTAGCCTATACTCACCGGAATCTCTTTCAGGATCCTAGAGGAGTTCCCAGCCTTCCCACAAGCCCAGGTGTTTggtatgctttggactctgtacctctccagctcagggcatcaagaatttccc Alignment from CESAR GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTC-TTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTg cagtgtcttacccagctcttgctaaggtcttaatgcttttgctttaatagGTAGTCGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGGGACTTAGCCTATACTCACCGGAATCTCTTTCAGGATCCTAGAGGAGTTCCCAGCCTTCCCACAAGCCCAGGTGTTTggtatgctttggactctgtacctctccagctcagggcatcaagaatttccc Alignment from Spaln_aa2Genome GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTC-CGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG cagtgtcttacccagctcttgctaaggtcttaatgcttttgctttaatagGTAGTCGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGGGACTTAGCCTATACTCACCGGAATCTCTTTcAGGATCCTAGAGGAGTTCCCAGCCTTCCCACAAGCCCAGGTGTTTGgtatgctttggactctgtacctctccagctcagggcatcaagaatttccc Alignment from Spaln_nt2Genome GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCC-GTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG cagtgtcttacccagctcttgctaaggtcttaatgcttttgctttaatagGTAGTCGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGGGACTTAGCCTATACTCACCGGAATCTCTTTCAGGATCCTAGAGGAGTTCCCAGCCTTCCCACAAGCCCAGGTGTTTGgtatgctttggactctgtacctctccagctcagggcatcaagaatttccc Alignment from Pairagon GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCC-GTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG cagtgtcttacccagctcttgctaaggtcttaatgcttttgctttaatagGTAGTCGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGGGACTTAGCCTATACTCACCGGAATCTCTTTCAGGATCCTAGAGGAGTTCCCAGCCTTCCCACAAGCCCAGGTGTTTGgtatgctttggactctgtacctctccagctcagggcatcaagaatttccc Alignment from Exonerate_protein2genome GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTC-TTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG cagtgtcttacccagctcttgctaaggtcttaatgcttttgctttaatagGTAGTCGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGGGACTTAGCCTATACTCACCGGAATCTCTTTCAGGATCCTAGAGGAGTTCCCAGCCTTCCCACAAGCCCAGGTGTTTGgtatgctttggactctgtacctctccagctcagggcatcaagaatttccc Alignment from Exonerate_coding2genome TCATCTCAAAGAAGGACCCAGAGGATATCAAAGAGGTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTC-TTCCGTCGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG cagtgtcttacccagCTCTTGCTAAGGTCTTAATGCTTTTGCTTTAATAGGTAGTCGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGGGACTTAGCCTATACTCACCGGAATCTCTTTCAGGATCCTAGAGGAGTTCCCAGCCTTCCCACAAGCCCAGGTGTTTGgtatgctttggactctgtacctctccagctcagggcatcaagaatttccc Alignment from GeneWise GTAGTAGTCTGGAAGCGGTACAGCGACTTCCGTAAGCTCCACGGGGACTTGGCCTATACTCACCGAAACCTCTTCCGT-CGCCTAGAGGAGTTTCCGGCCTTCCCCCGTGCCCAGGTGTTTG cagtgtcttacccagctcttgctaaggtcttaatgcttttgctttaatagGTAGTCGTCTGGAAGCAGTACAGTGATTTCCGTAAGCTTCATGGGGACTTAGCCTATACTCACCGGAATCTCTTTCAGGATCCTAGAGGAGTTCCCAGCCTTCCCACAAGCCCAGGTGTTTGgtatgctttggactctgtacctctccagctcagggcatcaagaatttccc #### Snx32_ID1068_10 --> 0 - 0 Original Alignment AAACTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGA-TATTACATGCGAGACTCACAGGCAGCCAAG gtctataccacaaaaaccaataattatgaagtgggttatttttaacacagAAGCTAGAAGGACAGGTAGCCTCTGATGAGGATCTGAGGCTGTCTGACATGCTGAGGCTATTACATGCTAGATTCACAGGTAGCCAAGgtaagtcgcagccatgctaacttgagtcctaagtaggtgtacagtcataa Alignment from CESAR AAACTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGA-TATTACATGCGAGACTCACAGGCAGCCAAG gtctataccacaaaaaccaataattatgaagtgggttatttttaacacagAAGCTAGAAGGACAGGTAGCCTCTGATGAGGATCTGAGGCTGTCTGACATGCTGAGGCTATTACATGCTAGATTCACAGGTAGCCAAGgtaagtcgcagccatgctaacttgagtcctaagtaggtgtacagtcataa Alignment from Spaln_aa2Genome AAACTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGA-TATTACATGCGAGACTCACAGGCAGCCAAG gtctataccacaaaaaccaataattatgaagtgggttatttttaacacagAAGCTAGAAGGACAGGTAGCCTCTGATGAGGATCTGAGGCTGTCTGACATGCTGAGGcTATTACATGCTAGATTCACAGGTAGCCAAGgtaagtcgcagccatgctaacttgagtcctaagtaggtgtacagtcataa Alignment from Spaln_nt2Genome AAACTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGA-TATTACATGCGAGACTCACAGGCAGCCAAG gtctataccacaaaaaccaataattatgaagtgggttatttttaacacagAAGCTAGAAGGACAGGTAGCCTCTGATGAGGATCTGAGGCTGTCTGACATGCTGAGGCTATTACATGCTAGATTCACAGGTAGCCAAGgtaagtcgcagccatgctaacttgagtcctaagtaggtgtacagtcataa Alignment from Pairagon AAACTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGA-TATTACATGCGAGACTCACAGGCAGCCAAG gtctataccacaaaaaccaataattatgaagtgggttatttttaacacagAAGCTAGAAGGACAGGTAGCCTCTGATGAGGATCTGAGGCTGTCTGACATGCTGAGGCTATTACATGCTAGATTCACAGGTAGCCAAGgtaagtcgcagccatgctaacttgagtcctaagtaggtgtacagtcataa Alignment from Exonerate_protein2genome AAACTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGA-TATTACATGCGAGACTCACAGGCAGCCAAG gtctataccacaaaaaccaataattatgaagtgggttatttttaacacagAAGCTAGAAGGACAGGTAGCCTCTGATGAGGATCTGAGGCTGTCTGACATGCTGAGGCTATTACATGCTAGATTCACAGGTAGCCAAGgtaagtcgcagccatgctaacttgagtcctaagtaggtgtacagtcataa Alignment from Exonerate_coding2genome AAACTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGA-TATTACATGCGAGACTCACAGGCAGCCAAG gtctataccacaaaaaccaataattatgaagtgggttatttttaacacagAAGCTAGAAGGACAGGTAGCCTCTGATGAGGATCTGAGGCTGTCTGACATGCTGAGGCTATTACATGCTAGATTCACAGGTAGCCAAGgtaagtcgcagccatgctaacttgagtcctaagtaggtgtacagtcataa Alignment from GeneWise AAACTGGAAGGCCGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTG-AGATATTACATGCGAGACTCACAGGCAGCCAAG gtctataccacaaaaaccaataattatgaagtgggttatttttaacacagAAGCTAGAAGGACAGGTAGCCTCTGATGAGGATCTGAGGCTGTCTGACATGCTGAGGCTATTACATGCTAGATTCACAGGTAGCCAAGgtaagtcgcagccatgctaacttgagtcctaagtaggtgtacagtcataa #### Snx32_ID1069_9 --> 1 - 0 Original Alignment gAGCTTCCTGAAG-CTGGCAGAGCTCTTTGAACGGCTGAGA ctcagggcatgcatgtgggtgagccctggttacttatatggctttgacaggAGCTTTCTAAAACCTGGCAGAACTGTTTGATCGGCTGCGGgtcagtactaccttcaacactagatctgctcagggatggccaaggtgcaa Alignment from CESAR gAGCTTCCTGAAG-CTGGCAGAGCTCTTTGAACGGCTGAGA ctcagggcatgcatgtgggtgagccctggttacttatatggctttgacaggAGCTTTCTAAAACCTGGCAGAACTGTTTGATCGGCTGCGGgtcagtactaccttcaacactagatctgctcagggatggccaaggtgcaa Alignment from Spaln_aa2Genome GAGCTTCCTGAAG-CTGGCAGAGCTCTTTGAACGGCTGAGA ctcagggcatgcatgtgggtgagccctggttacttatatggctttgacagGAGCTTTCTAAAAcCTGGCAGAACTGTTTGATCGGCTGCGGgtcagtactaccttcaacactagatctgctcagggatggccaaggtgcaa Alignment from Spaln_nt2Genome GAGCTTCCTGAAGC-TGGCAGAGCTCTTTGAACGGCTGAGA ctcagggcatgcatgtgggtgagccctggttacttatatggctttgacagGAGCTTTCTAAAACCTGGCAGAACTGTTTGATCGGCTGCGGgtcagtactaccttcaacactagatctgctcagggatggccaaggtgcaa Alignment from Pairagon GAGCTTCCTGAAG-CTGGCAGAGCTCTTTGAACGGCTGAGA ctcagggcatgcatgtgggtgagccctggttacttatatggctttgacagGAGCTTTCTAAAACCTGGCAGAACTGTTTGATCGGCTGCGGgtcagtactaccttcaacactagatctgctcagggatggccaaggtgcaa Alignment from Exonerate_protein2genome GAGCTTCCTGAAG-CTGGCAGAGCTCTTTGAACGGCTGAGA ctcagggcatgcatgtgggtgagccctggttacttatatggctttgacagGAGCTTTCTAAAACCTGGCAGAACTGTTTGATCGGCTGCGGgtcagtactaccttcaacactagatctgctcagggatggccaaggtgcaa Alignment from Exonerate_coding2genome ctcagggcatgcatgtgggtgagccctggttacttatatggctttgacaggagctttctaaaacctggcagaactgtttgatcggctgcgggtcagtactaccttcaacactagatctgctcagggatggccaaggtgcaa Alignment from GeneWise ctcagggcatgcatgtgggtgagccctggttacttatatggctttgacaggagctttctaaaacctggcagaactgtttgatcggctgcgggtcagtactaccttcaacactagatctgctcagggatggccaaggtgcaa #### Snx32_ID1071_7 --> 0 - 1 Original Alignment GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAG-AGGGCCGACCGTGTTATGCACTCCCACAAGt cacctcaagtgtactgcccccctcaggcaccttagaccctttcttcacagGAGGTAGATGACTTTTTTGAACATGAAAGGCCTTTCCTAGTTGAATATAAAACCCGAATTCGCGACACCTGCCAACAGAGCAGACCGCGTGATACACTCCCACAAAtgttagtcacatttagggctatagcactgaatgcacacatacctccaatta Alignment from CESAR GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAG-AGGGCCGACCGTGTTATGCACTCCCACAAGt cacctcaagtgtactgcccccctcaggcaccttagaccctttcttcacagGAGGTAGATGACTTTTTTGAACATGAAAGGCCTTTCCTAGTTGAATATAAAACCCGAATTCGCGACACCTGCCAACAGAGCAGACCGCGTGATACACTCCCACAAAtgttagtcacatttagggctatagcactgaatgcacacatacctccaatta Alignment from Spaln_aa2Genome GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAG-AGGGCCGACCGTGTTATGCACTCCCACAAGT cacctcaagtgtactgcccccctcaggcaccttagaccctttcttcacagGAGGTAGATGACTTTTTTGAACATGAAAGGCCTTTCCTAGTTGAATATAAAACCCGAATTCGCGACACCTGCCAAcAGAGCAGACCGCGTGATACACTCCCACAAATgttagtcacatttagggctatagcactgaatgcacacatacctccaatta Alignment from Spaln_nt2Genome GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAG-AGGGCCGACCGTGTTATGCACTCCCACAAGT cacctcaagtgtactgcccccctcaggcaccttagaccctttcttcacagGAGGTAGATGACTTTTTTGAACATGAAAGGCCTTTCCTAGTTGAATATAAAACCCGAATTCGCGACACCTGCCAACAGAGCAGACCGCGTGATACACTCCCACAAATgttagtcacatttagggctatagcactgaatgcacacatacctccaatta Alignment from Pairagon GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAG-AGGGCCGACCGTGTTATGCACTCCCACAAGT cacctcaagtgtactgcccccctcaggcaccttagaccctttcttcacagGAGGTAGATGACTTTTTTGAACATGAAAGGCCTTTCCTAGTTGAATATAAAACCCGAATTCGCGACACCTGCCAACAGAGCAGACCGCGTGATACACTCCCACAAATgttagtcacatttagggctatagcactgaatgcacacatacctccaatta Alignment from Exonerate_protein2genome GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAG-AGGGCCGACCGTGTTATGCACTCCCACAAGT cacctcaagtgtactgcccccctcaggcaccttagaccctttcttcacagGAGGTAGATGACTTTTTTGAACATGAAAGGCCTTTCCTAGTTGAATATAAAACCCGAATTCGCGACACCTGCCAACAGAGCAGACCGCGTGATACACTCCCACAAATgttagtcacatttagggctatagcactgaatgcacacatacctccaatta Alignment from Exonerate_coding2genome GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAG-AGGGCCGACCGTGTTATGCACTCCCACAAGT cacctcaagtgtactgcccccctcaggcaccttagaccctttcttcacagGAGGTAGATGACTTTTTTGAACATGAAAGGCCTTTCCTAGTTGAATATAAAACCCGAATTCGCGACACCTGCCAACAGAGCAGACCGCGTGATACACTCCCACAAATgttagtcacatttagggctatagcactgaatgcacacatacctccaatta Alignment from GeneWise GAGGTAGATGACTTCTTTGAGCACGAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGC-CAGAGGGCCGACCGTGTTATGCACTCCCACAAGT cacctcaagtgtactgcccccctcaggcaccttagaccctttcttcacagGAGGTAGATGACTTTTTTGAACATGAAAGGCCTTTCCTAGTTGAATATAAAACCCGAATTCGCGACACCTGCCAACAGAGCAGACCGCGTGATACACTCCCACAAATgttagtcacatttagggctatagcactgaatgcacacatacctccaatta #### Snx32_ID1072_6 --> 0 - 0 Original Alignment CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGAT-GAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacattattgagattacccaagtctccctttggtgtggccctccacagCTGAGTGTCCAGGAGAAGAACAGGAAGGAAGTATCTGGGGGGCTCCTAAGAGGT---GTAAGGTATGCAGACCGAAATCCTCATCACTGGTGGCATATCAGGGCTCAAAgtgactatcgcctcttttgtggtaggaggaacatgccaggtagccctggc Alignment from CESAR CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGAT-GAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacattattgagattacccaagtctccctttggtgtggccctccacagCTGAGTGTCCAGGAGAAGAACAGGAAGGAAGTATCTGGGGGGCTCCTAAGAGGT---GTAAGGTATGCAGACCGAAATCCTCATCACTGGTGGCATATCAGGGCTCAAAgtgactatcgcctcttttgtggtaggaggaacatgccaggtagccctggc Alignment from Spaln_aa2Genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGAT-GAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacattattgagattacccaagtctccctttggtgtggccctccacagCTGAGTGTCCAGGAGAAGAACAGGAAGGAAGTATCTGGGGGGCTCCTAAGAGGT---GTAAGGTATGCAGACcGAAATCCTCATCACTGGTGGCATATCAGGGCTCAAAgtgactatcgcctcttttgtggtaggaggaacatgccaggtagccctggc Alignment from Spaln_nt2Genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGAT-GAAGTCCTCATCACCGG---CATATCAGGGCTCAAG acaacattattgagattacccaagtctccctttggtgtggccctccacagCTGAGTGTCCAGGAGAAGAACAGGAAGGAAGTATCTGGGGGGCTCCTAAGAGG---TGTAAGGTATGCAGACCGAAATCCTCATCACTGGTGGCATATCAGGGCTCAAAgtgactatcgcctcttttgtggtaggaggaacatgccaggtagccctggc Alignment from Pairagon CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGA-TGAAGTCCTCATCAC---CGGCATATCAGGGCTCAAG acaacattattgagattacccaagtctccctttggtgtggccctccacagCTGAGTGTCCAGGAGAAGAACAGGAAGGAAGTATCTGGGGGGCTCCTAAGAGG---TGTAAGGTATGCAGACCGAAATCCTCATCACTGGTGGCATATCAGGGCTCAAAgtgactatcgcctcttttgtggtaggaggaacatgccaggtagccctggc Alignment from Exonerate_protein2genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGAT-GAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacattattgagattacccaagtctccctttggtgtggccctccacagCTGAGTGTCCAGGAGAAGAACAGGAAGGAAGTATCTGGGGGGCTCCTAAGAGGT---GTAAGGTATGCAGACCGAAATCCTCATCACTGGTGGCATATCAGGGCTCAAAgtgactatcgcctcttttgtggtaggaggaacatgccaggtagccctggc Alignment from Exonerate_coding2genome CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGAT-GAAGTCCTCATCACC---GGCATATCAGGGCTCAAG acaacattattgagattacccaagtctccctttggtgtggccctccacagCTGAGTGTCCAGGAGAAGAACAGGAAGGAAGTATCTGGGGGGCTCCTAAGAGGT---GTAAGGTATGCAGACCGAAATCCTCATCACTGGTGGCATATCAGGGCTCAAAgtgactatcgcctcttttgtggtaggaggaacatgccaggtagccctggc Alignment from GeneWise CTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGTCAGGTCTGCAGAT-GAAGTCCTCATCACCGGC---ATATCAGGGCTCAAG acaacattattgagattacccaagtctccctttggtgtggccctccacagCTGAGTGTCCAGGAGAAGAACAGGAAGGAAGTATCTGGGGGGCTCCTAAGAGGT---GTAAGGTATGCAGACCGAAATCCTCATCACTGGTGGCATATCAGGGCTCAAAgtgactatcgcctcttttgtggtaggaggaacatgccaggtagccctggc #### Snx32_ID1073_5 --> 1 - 0 Original Alignment gGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTC-TCCGTCTTCTTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaccgtctgacccttgctttttgtgcaggGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTCCAACGCCTGGCAGCCCACCCCACCCTGCGTCGGGACCACAACTTCCTCCATCTTCTTGGAATATAGCCAGGATgtacaatgattgaatcaatataatgagattagagtccagttaggggtgtg Alignment from CESAR gGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTC-TCCGTCTTCTTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaccgtctgacccttgctttttgtgcaggGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTCCAACGCCTGGCAGCCCACCCCACCCTGCGTCGGGACCACAACTTCCTCCATCTTCTTGGAATATAGCCAGGATgtacaatgattgaatcaatataatgagattagagtccagttaggggtgtg Alignment from Spaln_aa2Genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTC-TCCGTCTTCTTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaccgtctgacccttgctttttgtgcagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTCCAACGCCTGGCAGCCCACCCCACCCTGCGTCGGGACCACAACTTCcTCCATCTTCTTGGAATATAGCCAGGATgtacaatgattgaatcaatataatgagattagagtccagttaggggtgtg Alignment from Spaln_nt2Genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTT-CTCCGTCTTCTTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaccgtctgacccttgctttttgtgcagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTCCAACGCCTGGCAGCCCACCCCACCCTGCGTCGGGACCACAACTTCCTCCATCTTCTTGGAATATAGCCAGGATgtacaatgattgaatcaatataatgagattagagtccagttaggggtgtg Alignment from Pairagon GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTT-CTCCGTCTTCTTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaccgtctgacccttgctttttgtgcagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTCCAACGCCTGGCAGCCCACCCCACCCTGCGTCGGGACCACAACTTCCTCCATCTTCTTGGAATATAGCCAGGATgtacaatgattgaatcaatataatgagattagagtccagttaggggtgtg Alignment from Exonerate_protein2genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTC-TCCGTCTTCTTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaccgtctgacccttgctttttgtgcagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTCCAACGCCTGGCAGCCCACCCCACCCTGCGTCGGGACCACAACTTCCTCCATCTTCTTGGAATATAGCCAGGATgtacaatgattgaatcaatataatgagattagagtccagttaggggtgtg Alignment from Exonerate_coding2genome GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTC-TCCGTCTTCTTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaccgtctgacccttgctttttgtgcagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTCCAACGCCTGGCAGCCCACCCCACCCTGCGTCGGGACCACAACTTCCTCCATCTTCTTGGAATATAGCCAGGATgtacaatgattgaatcaatataatgagattagagtccagttaggggtgtg Alignment from GeneWise GGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTC-TCCGTCTTCTTGGAATACAGCCAGGAT caagctaggaggtagtccagtagaccgtctgacccttgctttttgtgcagGGAATACTTGGCCATTTTTAAGAAGACTGTTGCGATGCATGAAGTCTTCCTCCAACGCCTGGCAGCCCACCCCACCCTGCGTCGGGACCACAACTTCCTCCATCTTCTTGGAATATAGCCAGGATgtacaatgattgaatcaatataatgagattagagtccagttaggggtgtg #### Snx32_ID1075_3 --> 0 - 0 Original Alignment AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACAT-GACACCTATGTGGAAAACGAA------GAGTACGCCGGCCTCATC agggtagcttagggtaagaagaaattgcaaatgaacttgtgatttcccagGGTGGGCTGCCTCACTCTGCCCAGTCTGAATTCTCAGTGGTCTGCCAGCATAAAGAGTTCATCTGGCTGCATCGACACTTATGTAGAGAATGAAGAGTATGAATACATTAGCCTTGTTgtgagtagcagtggggcagggttggagtgataaaaaagtaagcaagggtg Alignment from CESAR AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACAT-GACACCTATGTGGAAAACGAAGAGTACGCC------GGCCTCATC agggtagcttagggtaagaagaaattgcaaatgaacttgtgatttcccagGGTGGGCTGCCTCACTCTGCCCAGTCTGAATTCTCAGTGGTCTGCCAGCATAAAGAGTTCATCTGGCTGCATCGACACTTATGTAGAGAATGAAGAGTATGAATACATTAGCCTTGTTgtgagtagcagtggggcagggttggagtgataaaaaagtaagcaagggtg Alignment from Spaln_aa2Genome AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACAT-GACACCTATGTGGAAAACGAA------GAGTACGCCGGCCTCATC agggtagcttagggtaagaagaaattgcaaatgaacttgtgatttcccagGGTGGGCTGCCTCACTCTGCCCAGTCTGAATTCTCAGTGGTCTGCCAGCATAAAGAGTTCATCTGGCTGCATcGACACTTATGTAGAGAATGAAGAGTATGAATACATTAGCCTTGTTgtgagtagcagtggggcagggttggagtgataaaaaagtaagcaagggtg Alignment from Spaln_nt2Genome AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACAT-GACACCTATGTGGAAAACGAAGAGTACGCCG------GCCTCATC agggtagcttagggtaagaagaaattgcaaatgaacttgtgatttcccagGGTGGGCTGCCTCACTCTGCCCAGTCTGAATTCTCAGTGGTCTGCCAGCATAAAGAGTTCATCTGGCTGCATCGACACTTATGTAGAGAATGAAGAGTATGAATACATTAGCCTTGTTgtgagtagcagtggggcagggttggagtgataaaaaagtaagcaagggtg Alignment from Pairagon AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACAT-GACACCTATGTGGAAAACGAAGA agggtagcttagggtaagaagaaattgcaaatgaacttgtgatttcccagGGTGGGCTGCCTCACTCTGCCCAGTCTGAATTCTCAGTGGTCTGCCAGCATAAAGAGTTCATCTGGCTGCATCGACACTTATGTAGAGAATGAAGAgtatgaatacattagccttgttgtgagtagcagtggggcagggttggagtgataaaaaagtaagcaagggtg Alignment from Exonerate_protein2genome AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACAT-GACACCTATGTGGAAAACGAA------GAGTACGCCGGCCTCATC agggtagcttagggtaagaagaaattgcaaatgaacttgtgatttcccagGGTGGGCTGCCTCACTCTGCCCAGTCTGAATTCTCAGTGGTCTGCCAGCATAAAGAGTTCATCTGGCTGCATCGACACTTATGTAGAGAATGAAGAGTATGAATACATTAGCCTTGTTgtgagtagcagtggggcagggttggagtgataaaaaagtaagcaagggtg Alignment from Exonerate_coding2genome AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACAT-GACACCTATGTGGAAAACGAA------GAGTACGCCGGCCTCATC agggtagcttagggtaagaagaaattgcaaatgaacttgtgatttcccagGGTGGGCTGCCTCACTCTGCCCAGTCTGAATTCTCAGTGGTCTGCCAGCATAAAGAGTTCATCTGGCTGCATCGACACTTATGTAGAGAATGAAGAGTATGAATACATTAGCCTTGTTgtgagtagcagtggggcagggttggagtgataaaaaagtaagcaagggtg Alignment from GeneWise AGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGGCTACAT-GACACCTATGTGGAAAACGAAGAGTACGCCGGCCTCATCATT agggtagcttagggtaagaagaaattgcaaatgaacttgtgatttcccagGGTGGGCTGCCTCACTCTGCCCAGTCTGAATTCTCAGTGGTCTGCCAGCATAAAGAGTTCATCTGGCTGCATCGACACTTATGTAGAGAATGAAGAGTATGAATACATTAGCCTTgttgtgagtagcagtggggcagggttggagtgataaaaaagtaagcaagggtg #### Sptbn2_ID628_23 --> 0 - 2 Original Alignment GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCAT-GAACATCCAGAGag ctcttactcaagaagacctgaagttttgcaatgccatcttcttttggtagGATGAGCTGAGTGCCCAGGCAGAGGTAAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAAACCATTAAACAACTATCTGCCAGTAGTCAAGATATGATTGACCATCGAACATCCAGAGaggtatgtgcatgtatgtgatctttagcagtttctttatcttatattttcag Alignment from CESAR GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCAT-GAACATCCAGAGag ctcttactcaagaagacctgaagttttgcaatgccatcttcttttggtagGATGAGCTGAGTGCCCAGGCAGAGGTAAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAAACCATTAAACAACTATCTGCCAGTAGTCAAGATATGATTGACCATCGAACATCCAGAGaggtatgtgcatgtatgtgatctttagcagttccttggattttttcctacag Alignment from Spaln_aa2Genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCAT-GAACATCCAGAGAG ctcttactcaagaagacctgaagttttgcaatgccatcttcttttggtagGATGAGCTGAGTGCCCAGGCAGAGGTAAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAAACCATTAAACAACTATCTGCCAGTAGTCAAGATATGATTGACCATcGAACATCCAGAGAGgtatgtgcatgtatgtgatctttagcagtttctttatcttatattttcag Alignment from Spaln_nt2Genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCAT-GAACATCCAGAGAG ctcttactcaagaagacctgaagttttgcaatgccatcttcttttggtagGATGAGCTGAGTGCCCAGGCAGAGGTAAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAAACCATTAAACAACTATCTGCCAGTAGTCAAGATATGATTGACCATCGAACATCCAGAGAGgtatgtgcatgtatgtgatctttagcagtttctttatcttatattttcag Alignment from Pairagon GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCAT-GAACATCCAGAGAG ctcttactcaagaagacctgaagttttgcaatgccatcttcttttggtagGATGAGCTGAGTGCCCAGGCAGAGGTAAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAAACCATTAAACAACTATCTGCCAGTAGTCAAGATATGATTGACCATCGAACATCCAGAGAGgtatgtgcatgtatgtgatctttagcagtttctttatcttatattttcag Alignment from Exonerate_protein2genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCAT-GAACATCCAGAGAG ctcttactcaagaagacctgaagttttgcaatgccatcttcttttggtagGATGAGCTGAGTGCCCAGGCAGAGGTAAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAAACCATTAAACAACTATCTGCCAGTAGTCAAGATATGATTGACCATCGAACATCCAGAGAGgtatgtgcatgtatgtgatctttagcagtttctttatcttatattttcag Alignment from Exonerate_coding2genome GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCAT-GAACATCCAGAGAG ctcttactcaagaagacctgaagttttgcaatgccatcttcttttggtagGATGAGCTGAGTGCCCAGGCAGAGGTAAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAAACCATTAAACAACTATCTGCCAGTAGTCAAGATATGATTGACCATCGAACATCCAGAGAGgtatgtgcatgtatgtgatctttagcagtttctttatcttatattttcag Alignment from GeneWise GATGAGCTGAGCGCCCAGGCAGAAGTGAAGAAGCATCAGGTATTGGAACAAGCCCTTGCTGACTATGCCCAGACCATCAAACAACTAGCAGCCAGCAGTCAAGATATGATTGACCAT-GAACATCCAGAGAG ctcttactcaagaagacctgaagttttgcaatgccatcttcttttggtagGATGAGCTGAGTGCCCAGGCAGAGGTAAGGAAGCATCAGGTATTGGAACAAGCCCTTGCTGATTATGCCCAAACCATTAAACAACTATCTGCCAGTAGTCAAGATATGATTGACCATCGAACATCCAGAGAGgtatgtgcatgtatgtgatctttagcagtttctttatcttatattttcag #### Sptbn2_ID633_28 --> 0 - 1 Original Alignment ATCTCAGAGAAGCTGTCT-CAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTg ggatccacattgccatggtcaagtcccaagatcgtgttctctgtttgtagATTTCAGAGAAGCTGTCTCCAGCTACAGTCCCGGCGCCAGGAGACTGCTGACAAGTGGCAGGAGAAAATGGACTGGTTACAACTTggtaagttaattaacaatatcgcgggaggtaggggttattggagggtgtac Alignment from CESAR ATCTCAGAGAAGCTGTCT-CAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTg ggatccacattgccatggtcaagtcccaagatcgtgttctctgtttgtagATTTCAGAGAAGCTGTCTCCAGCTACAGTCCCGGCGCCAGGAGACTGCTGACAAGTGGCAGGAGAAAATGGACTGGTTACAACTTggtaagttaattaacaatatcgcgggaggtaggggttattggagggtgtac Alignment from Spaln_aa2Genome ATCTCAGAGAAGCTGTCT-CAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG ggatccacattgccatggtcaagtcccaagatcgtgttctctgtttgtagATTTCAGAGAAGCTGTCTcCAGCTACAGTCCCGGCGCCAGGAGACTGCTGACAAGTGGCAGGAGAAAATGGACTGGTTACAACTTGgtaagttaattaacaatatcgcgggaggtaggggttattggagggtgtac Alignment from Spaln_nt2Genome ATCTCAGAGAAGCTGTCT-CAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG ggatccacattgccatggtcaagtcccaagatcgtgttctctgtttgtagATTTCAGAGAAGCTGTCTCCAGCTACAGTCCCGGCGCCAGGAGACTGCTGACAAGTGGCAGGAGAAAATGGACTGGTTACAACTTGgtaagttaattaacaatatcgcgggaggtaggggttattggagggtgtac Alignment from Pairagon ATCTCAGAGAAGCTGTCT-CAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG ggatccacattgccatggtcaagtcccaagatcgtgttctctgtttgtagATTTCAGAGAAGCTGTCTCCAGCTACAGTCCCGGCGCCAGGAGACTGCTGACAAGTGGCAGGAGAAAATGGACTGGTTACAACTTGgtaagttaattaacaatatcgcgggaggtaggggttattggagggtgtac Alignment from Exonerate_protein2genome ATCTCAGAGAAGCTGTCT-CAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG ggatccacattgccatggtcaagtcccaagatcgtgttctctgtttgtagATTTCAGAGAAGCTGTCTCCAGCTACAGTCCCGGCGCCAGGAGACTGCTGACAAGTGGCAGGAGAAAATGGACTGGTTACAACTTGgtaagttaattaacaatatcgcgggaggtaggggttattggagggtgtac Alignment from Exonerate_coding2genome ATCTCAGAGAAGCTGTCT-CAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG ggatccacattgccatggtcaagtcccaagatcgtgttctctgtttgtagATTTCAGAGAAGCTGTCTCCAGCTACAGTCCCGGCGCCAGGAGACTGCTGACAAGTGGCAGGAGAAAATGGACTGGTTACAACTTGgtaagttaattaacaatatcgcgggaggtaggggttattggagggtgtac Alignment from GeneWise ATCTCAGAGAAGCTGTCTCAGCTACAGTCCCGGCGCCAGGAGACAGCTGACAAGTGGCAGGAGAAGATGGACTGGCTACAGCTTG ggatccacattgccatggtcaagtcccaagatcgtgttctctgtttgtagatttcagAGAAGC------TGTCTCCAGCTACAGTCCCGGCGCCAGGAGACTGCTGACAAGTGGCAGGAGAAAATGGACTGGTTACAACTTGgtaagttaattaacaatatcgcgggaggtaggggttattggagggtgtac #### Sptbn2_ID634_29 --> 2 - 0 Original Alignment ttTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTT-CAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ctgtcaactaacctatgaagtctctatatgcctctttccttattttgcagttTTGGAGGTGCTTGTATTCGGGAAAGATGCAGGGATGGCAGAGGCCTGGCTGTGTAGCCAGGCACCAGTGGTGCGAAGTGCAGAATTGGGTTGTACTGTGGATGAAGTAGAGGCCCTCATCAAGCGGCATGAGGCCTATCCAGAAGTCAGCTGTAGCGTGGGAAGAGCGGTTTAGTGCATTGGATAAGCTCACTGCAgtacgagctgtagtaacccagaggctcgcaaccctgttagtgtcgttctc Alignment from CESAR ttTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTT-CAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ctgtcaactaacctatgaagtctctatatgcctctttccttattttgcagttTTGGAGGTGCTTGTATTCGGGAAAGATGCAGGGATGGCAGAGGCCTGGCTGTGTAGCCAGGCACCAGTGGTGCGAAGTGCAGAATTGGGTTGTACTGTGGATGAAGTAGAGGCCCTCATCAAGCGGCATGAGGCCTATCCAGAAGTCAGCTGTAGCGTGGGAAGAGCGGTTTAGTGCATTGGATAAGCTCACTGCAgtacgagctgtagtaacccagaggctcgcaaccctgttagtgtcgttctc Alignment from Spaln_aa2Genome TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTT-CAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ctgtcaactaacctatgaagtctctatatgcctctttccttattttgcagTTTTGGAGGTGCTTGTATTCGGGAAAGATGCAGGGATGGCAGAGGCCTGGCTGTGTAGCCAGGCACCAGTGGTGCGAAGTGCAGAATTGGGTTGTACTGTGGATGAAGTAGAGGCCCTCATCAAGCGGCATGAGGCCTATcCAGAAGTCAGCTGTAGCGTGGGAAGAGCGGTTTAGTGCATTGGATAAGCTCACTGCAgtacgagctgtagtaacccagaggctcgcaaccctgttagtgtcgttctc Alignment from Spaln_nt2Genome TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTTC-AGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ctgtcaactaacctatgaagtctctatatgcctctttccttattttgcagTTTTGGAGGTGCTTGTATTCGGGAAAGATGCAGGGATGGCAGAGGCCTGGCTGTGTAGCCAGGCACCAGTGGTGCGAAGTGCAGAATTGGGTTGTACTGTGGATGAAGTAGAGGCCCTCATCAAGCGGCATGAGGCCTATCCAGAAGTCAGCTGTAGCGTGGGAAGAGCGGTTTAGTGCATTGGATAAGCTCACTGCAgtacgagctgtagtaacccagaggctcgcaaccctgttagtgtcgttctc Alignment from Pairagon TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCT-TTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ctgtcaactaacctatgaagtctctatatgcctctttccttattttgcagTTTTGGAGGTGCTTGTATTCGGGAAAGATGCAGGGATGGCAGAGGCCTGGCTGTGTAGCCAGGCACCAGTGGTGCGAAGTGCAGAATTGGGTTGTACTGTGGATGAAGTAGAGGCCCTCATCAAGCGGCATGAGGCCTATCCAGAAGTCAGCTGTAGCGTGGGAAGAGCGGTTTAGTGCATTGGATAAGCTCACTGCAgtacgagctgtagtaacccagaggctcgcaaccctgttagtgtcgttctc Alignment from Exonerate_protein2genome TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTT-CAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ctgtcaactaacctatgaagtctctatatgcctctttccttattttgcagTTTTGGAGGTGCTTGTATTCGGGAAAGATGCAGGGATGGCAGAGGCCTGGCTGTGTAGCCAGGCACCAGTGGTGCGAAGTGCAGAATTGGGTTGTACTGTGGATGAAGTAGAGGCCCTCATCAAGCGGCATGAGGCCTATCCAGAAGTCAGCTGTAGCGTGGGAAGAGCGGTTTAGTGCATTGGATAAGCTCACTGCAgtacgagctgtagtaacccagaggctcgcaaccctgttagtgtcgttctc Alignment from Exonerate_coding2genome TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCCTTT-CAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ctgtcaactaacctatgaagtctctatatgcctctttccttattttgcagTTTTGGAGGTGCTTGTATTCGGGAAAGATGCAGGGATGGCAGAGGCCTGGCTGTGTAGCCAGGCACCAGTGGTGCGAAGTGCAGAATTGGGTTGTACTGTGGATGAAGTAGAGGCCCTCATCAAGCGGCATGAGGCCTATCCAGAAGTCAGCTGTAGCGTGGGAAGAGCGGTTTAGTGCATTGGATAAGCTCACTGCAgtacgagctgtagtaacccagaggctcgcaaccctgttagtgtcgttctc Alignment from GeneWise TTTTGGAGGTGCTTGTGTTTGGGAGAGATGCAGGGATGGCGGAGGCCTGGCTGTGCAGTCAGGAGCCATTGGTGCGAAGTGCAGAACTGGGTTGCACTGTGGACGAAGTAGAGAGCCTCATCAAGCGACACGAAGCC-TTTCAGAAGTCGGCCGTGGCCTGGGAAGAGCGTTTCAGTGCGCTGGAGAAGCTCACTGCG ctgtcaactaacctatgaagtctctatatgcctctttccttattttgcagTTTTGGAGGTGCTTGTATTCGGGAAAGATGCAGGGATGGCAGAGGCCTGGCTGTGTAGCCAGGCACCAGTGGTGCGAAGTGCAGAATTGGGTTGTACTGTGGATGAAGTAGAGGCCCTCATCAAGCGGCATGAGGCCTATCCAGAAGTCAGCTGTAGCGTGGGAAGAGCGGTTTAGTGCATTGGATAAGCTCACTGCAgtacgagctgtagtaacccagaggctcgcaaccctgttagtgtcgttctc #### Sptbn2_ID637_32 --> 0 - 0 Original Alignment CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAAT-GTCCCCGAAGGACCT tcttgaaactcagccaccatttgaatcttggtgtccttttgaacctccagCCCCTGTTGGAACAGCAGAGACTTGAACATGGCAATCGTGCCTGAGGGACCTgtaagtttagctgggcttaagtgtggctatcgaaaggtgatgatgcaaaa Alignment from CESAR CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAAT-GTCCCCGAAGGACCT tcttgaaactcagccaccatttgaatcttggtgtccttttgaacctccagCCCCTGTTGGAACAGCAGAGACTTGAACATGGCAATCGTGCCTGAGGGACCTgtaagtttagctgggcttaagtgtggctatcgaaaggtgatgatgcaaaa Alignment from Spaln_aa2Genome CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAAT-GTCCCCGAAGGACCT tcttgaaactcagccaccatttgaatcttggtgtccttttgaacctccagCCCCTGTTGGAACAGCAGAGACTTGAACATGGCAATcGTGCCTGAGGGACCTgtaagtttagctgggcttaagtgtggctatcgaaaggtgatgatgcaaaa Alignment from Spaln_nt2Genome CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAAT-GTCCCCGAAGGACCT tcttgaaactcagccaccatttgaatcttggtgtccttttgaacctccagCCCCTGTTGGAACAGCAGAGACTTGAACATGGCAATCGTGCCTGAGGGACCTgtaagtttagctgggcttaagtgtggctatcgaaaggtgatgatgcaaaa Alignment from Pairagon CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAAT-GTCCCCGAAGGACCT tcttgaaactcagccaccatttgaatcttggtgtccttttgaacctccagCCCCTGTTGGAACAGCAGAGACTTGAACATGGCAATCGTGCCTGAGGGACCTgtaagtttagctgggcttaagtgtggctatcgaaaggtgatgatgcaaaa Alignment from Exonerate_protein2genome CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAAT-GTCCCCGAAGGACCT tcttgaaactcagccaccatttgaatcttggtgtccttttgaacctccagCCCCTGTTGGAACAGCAGAGACTTGAACATGGCAATCGTGCCTGAGGGACCTgtaagtttagctgggcttaagtgtggctatcgaaaggtgatgatgcaaaa Alignment from Exonerate_coding2genome CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAAT-GTCCCCGAAGGACCT tcttgaaactcagccaccatttgaatcttggtgtccttttgaacctccagCCCCTGTTGGAACAGCAGAGACTTGAACATGGCAATCGTGCCTGAGGGACCTgtaagtttagctgggcttaagtgtggctatcgaaaggtgatgatgcaaaa Alignment from GeneWise CCCCTGTTGGAACAGCAGAGACTTGAACAGAGCAAT-GTCCCCGAAGGACCT tcttgaaactcagccaccatttgaatcttggtgtccttttgaacctccagCCCCTGTTGGAACAGCAGAGACTTGAACATGGCAATCGTGCCTGAGGGACCTgtaagtttagctgggcttaagtgtggctatcgaaaggtgatgatgcaaaa #### Sptbn2_ID640_35 --> 1 - 0 Original Alignment cTTACAGGATGGCAAAGAATACCTATTC-CAGGCCAAGGACGAG tacacaaaaagacagatttgtagctctctctcgtttttggtatttcccagaTTACAGGATGGTAAAGAATACCTATTCCCAAGCCCAAGATGAGgtttgtccccccctactccctgtggcttttcttgctagcagctaggtttt Alignment from CESAR cTTACAGGATGGCAAAGAATACCTATTC-CAGGCCAAGGACGAG tacacaaaaagacagatttgtagctctctctcgtttttggtatttcccagaTTACAGGATGGTAAAGAATACCTATTCCCAAGCCCAAGATGAGgtttgtccccccctactccctgtggcttttcttgctagcagctaggtttt Alignment from Spaln_aa2Genome CTTACAGGATGGCAAAGAATACCTATTC-CAGGCCAAGGACGAG tacacaaaaagacagatttgtagctctctctcgtttttggtatttcccagATTACAGGATGGTAAAGAATACCTATTCcCAAGCCCAAGATGAGgtttgtccccccctactccctgtggcttttcttgctagcagctaggtttt Alignment from Spaln_nt2Genome CTTACAGGATGGCAAAGAATACCTATTCC-AGGCCAAGGACGAG tacacaaaaagacagatttgtagctctctctcgtttttggtatttcccagATTACAGGATGGTAAAGAATACCTATTCCCAAGCCCAAGATGAGgtttgtccccccctactccctgtggcttttcttgctagcagctaggtttt Alignment from Pairagon CTTACAGGATGGCAAAGAATACCTATT-CCAGGCCAAGGACGAG tacacaaaaagacagatttgtagctctctctcgtttttggtatttcccagATTACAGGATGGTAAAGAATACCTATTCCCAAGCCCAAGATGAGgtttgtccccccctactccctgtggcttttcttgctagcagctaggtttt Alignment from Exonerate_protein2genome CTTACAGGATGGCAAAGAATACCTATTC-CAGGCCAAGGACGAG tacacaaaaagacagatttgtagctctctctcgtttttggtatttcccagATTACAGGATGGTAAAGAATACCTATTCCCAAGCCCAAGATGAGgtttgtccccccctactccctgtggcttttcttgctagcagctaggtttt Alignment from Exonerate_coding2genome tacacaaaaagacagatttgtagctctctctcgtttttggtatttcccagattacaggatggtaaagaatacctattcccaagcccaagatgaggtttgtccccccctactccctgtggcttttcttgctagcagctaggtttt Alignment from GeneWise tacacaaaaagacagatttgtagctctctctcgtttttggtatttcccagattacaggatggtaaagaatacctattcccaagcccaagatgaggtttgtccccccctactccctgtggcttttcttgctagcagctaggtttt #### Ssh3_ID444_12 --> 1 - 2 Original Alignment aGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATG-GGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCag agcttatttggggtagaaacacatggacttggtgttcttgtaataattagaGCACAGGGCACACGTGTGCTAGTCCACTGCAAGACACGGTGTCAGTCGATCTGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGGCCCATAGTCCACCCTAATCACAGTTTTCTTCATCAGCTACAGACATATCAAGGCAGTTTGGCTGCTaggtgagtgtggtgaattgaaagttgtatatgcataaattgaggtgtcaatt Alignment from CESAR aGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATG-GGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCag agcttatttggggtagaaacacatggacttggtgttcttgtaataattagaGCACAGGGCACACGTGTGCTAGTCCACTGCAAGACACGGTGTCAGTCGATCTGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGGCCCATAGTCCACCCTAATCACAGTTTTCTTCATCAGCTACAGACATATCAAGGCAGTTTGGCTGCTaggtgagtgtggtgaattgaaagttgtatatgcataaattgaggtgtcaatt Alignment from Spaln_aa2Genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATG-GGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG agcttatttggggtagaaacacatggacttggtgttcttgtaataattagAGCACAGGGCACACGTGTGCTAGTCCACTGCAAGACAcGGTGTCAGTCGATCTGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGGCCCATAGTCCACCCTAATCACAGTTTTCTTCATCAGCTACAGACATATCAAGGCAGTTTGGCTGCTAGgtgagtgtggtgaattgaaagttgtatatgcataaattgaggtgtcaatt Alignment from Spaln_nt2Genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATG-GGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG agcttatttggggtagaaacacatggacttggtgttcttgtaataattagAGCACAGGGCACACGTGTGCTAGTCCACTGCAAGACACGGTGTCAGTCGATCTGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGGCCCATAGTCCACCCTAATCACAGTTTTCTTCATCAGCTACAGACATATCAAGGCAGTTTGGCTGCTAGgtgagtgtggtgaattgaaagttgtatatgcataaattgaggtgtcaatt Alignment from Pairagon AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATG-GGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG agcttatttggggtagaaacacatggacttggtgttcttgtaataattagAGCACAGGGCACACGTGTGCTAGTCCACTGCAAGACACGGTGTCAGTCGATCTGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGGCCCATAGTCCACCCTAATCACAGTTTTCTTCATCAGCTACAGACATATCAAGGCAGTTTGGCTGCTAGgtgagtgtggtgaattgaaagttgtatatgcataaattgaggtgtcaatt Alignment from Exonerate_protein2genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATG-GGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG agcttatttggggtagaaacacatggacttggtgttcttgtaataattagAGCACAGGGCACACGTGTGCTAGTCCACTGCAAGACACGGTGTCAGTCGATCTGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGGCCCATAGTCCACCCTAATCACAGTTTTCTTCATCAGCTACAGACATATCAAGGCAGTTTGGCTGCTAGgtgagtgtggtgaattgaaagttgtatatgcataaattgaggtgtcaatt Alignment from Exonerate_coding2genome AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAGATG-GGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG agcttatttggggtagaaacacatggacttggtgttcttgtaataattagAGCACAGGGCACACGTGTGCTAGTCCACTGCAAGACACGGTGTCAGTCGATCTGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGGCCCATAGTCCACCCTAATCACAGTTTTCTTCATCAGCTACAGACATATCAAGGCAGTTTGGCTGCTAGgtgagtgtggtgaattgaaagttgtatatgcataaattgaggtgtcaatt Alignment from GeneWise AGCACAGGGCACTCGGGTGCTAGTCCACTGTAAG-ATGGGTGTCAGCCGTTCTGCCGCCACGGTACTAGCCTATGCCATGAAACAGTATGGCTGGGACCTGGAGCAAGCCCTGATCCACGTGCAGGAGCTCCGGCCCATTGTACGCCCCAACCACGGCTTCCTGCGCCAGCTACGGACCTACCAGGGCATTCTGACTGCCAG agcttatttggggtagaaacacatggacttggtgttcttgtaataattagAGCACAGGGCACACGTGTGCTAGTCCACTGCAAGACACGGTGTCAGTCGATCTGCTGCAACAGTACTAGCCTATGCTATGAAACAGTATGGCTGGGACCCAGAGCAAGCCCTGATCCATGTGCAAAAGCTACGGCCCATAGTCCACCCTAATCACAGTTTTCTTCATCAGCTACAGACATATCAAGGCAGTTTGGCTGCTAGgtgagtgtggtgaattgaaagttgtatatgcataaattgaggtgtcaatt #### Ssh3_ID445_11 --> 1 - 2 Original Alignment aGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTA-CGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCag caatagagtccttggtggttctttattgtggtttccatattgctttcaagaGCAAGTCACATCTTGAACATGGCCCAGGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACCGTGTCTGGGATGAAAAATCGGCACAGCTTTTACCTCACTGGAAGGAGACACATCGATTTATTGAGGATGCCaggtgagtctgctccccgggtttgatgccccatccactagtatagactggtc Alignment from CESAR aGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTA-CGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCag caatagagtccttggtggttctttattgtggtttccatattgctttcaagaGCAAGTCACATCTTGAACATGGCCCAGGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACCGTGTCTGGGATGAAAAATCGGCACAGCTTTTACCTCACTGGAAGGAGACACATCGATTTATTGAGGATGCCaggtgagtctgctccccgggtttgatgccccatccactagtatagactggtc Alignment from Spaln_aa2Genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTA-CGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG caatagagtccttggtggttctttattgtggtttccatattgctttcaagAGCAAGTCACATCTTGAACATGGCCCAGGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTAcCGTGTCTGGGATGAAAAATCGGCACAGCTTTTACCTCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtgagtctgctccccgggtttgatgccccatccactagtatagactggtc Alignment from Spaln_nt2Genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTA-CGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG caatagagtccttggtggttctttattgtggtttccatattgctttcaagAGCAAGTCACATCTTGAACATGGCCCAGGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACCGTGTCTGGGATGAAAAATCGGCACAGCTTTTACCTCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtgagtctgctccccgggtttgatgccccatccactagtatagactggtc Alignment from Pairagon AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTA-CGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG caatagagtccttggtggttctttattgtggtttccatattgctttcaagAGCAAGTCACATCTTGAACATGGCCCAGGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACCGTGTCTGGGATGAAAAATCGGCACAGCTTTTACCTCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtgagtctgctccccgggtttgatgccccatccactagtatagactggtc Alignment from Exonerate_protein2genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTA-CGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG caatagagtccttggtggttctttattgtggtttccatattgctttcaagAGCAAGTCACATCTTGAACATGGCCCAGGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACCGTGTCTGGGATGAAAAATCGGCACAGCTTTTACCTCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtgagtctgctccccgggtttgatgccccatccactagtatagactggtc Alignment from Exonerate_coding2genome AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAATGTA-CGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG caatagagtccttggtggttctttattgtggtttccatattgctttcaagAGCAAGTCACATCTTGAACATGGCCCAGGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACCGTGTCTGGGATGAAAAATCGGCACAGCTTTTACCTCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtgagtctgctccccgggtttgatgccccatccactagtatagactggtc Alignment from GeneWise AGTAAGTCACATCTTGAACATGGCCCGGGAGATTGACAACTTCTTCCCTGAGCGCTTCACCTATTACAAT-GTACGTGTCTGGGATGAGGAATCGGCACAGCTTCTGCCCCACTGGAAGGAGACACATCGATTCATTGAGGATGCCAG caatagagtccttggtggttctttattgtggtttccatattgctttcaagAGCAAGTCACATCTTGAACATGGCCCAGGAGATTGACAACTTCTTCCCTGAGCGTTTTACCTATTACAATGTACCGTGTCTGGGATGAAAAATCGGCACAGCTTTTACCTCACTGGAAGGAGACACATCGATTTATTGAGGATGCCAGgtgagtctgctccccgggtttgatgccccatccactagtatagactggtc #### Ssh3_ID446_10 --> 0 - 2 Original Alignment CCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCC-AACCTGGAGGAACTTCAGAAAAACag CACACCTCTACTTGgtatgtggtccttttattcatcattatgttttacagGGCTCTGAATGGAATGCTGCCCAACCTAGAGGAGCTCCAAAAGAACaggtaagatttctggctgtgagtccctcttgacctcccagcttcccagcctc Alignment from CESAR CCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCC-AACCTGGAGGAACTTCAGAAAAACag CACACCTCTACTTGgtaggaggtccttttattcatcattatgttttacagGGCTCTGAATGGAATGCTGCCCAACCTAGAGGAGCTCCAAAAGAACaggtaagatttctggctgtgagtccctcttgacctcccagcttcccagcctc Alignment from Spaln_aa2Genome CCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCC-AACCTGGAGGAACTTCAGAAAAACAG CACACCTCTACTTGgtatgtggtccttttattcatcattatgttttacagGGCTCTGAATGGAATGCTGCCcAACCTAGAGGAGCTCCAAAAGAACAGgtaagatttctggctgtgagtccctcttgacctcccagcttcccagcctc Alignment from Spaln_nt2Genome CCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCC-AACCTGGAGGAACTTCAGAAAAACAG CACACCTCTACTTGgtatgtggtccttttattcatcattatgttttacagGGCTCTGAATGGAATGCTGCCCAACCTAGAGGAGCTCCAAAAGAACAGgtaagatttctggctgtgagtccctcttgacctcccagcttcccagcctc Alignment from Pairagon CCCACCTCTACTTG GGCTCTGAGTGGAATGCTG-CCAACCTGGAGGAACTTCAGAAAAACAG CACACCTCTACTTGgtatgtggtccttttattcatcattatgttttacagGGCTCTGAATGGAATGCTGCCCAACCTAGAGGAGCTCCAAAAGAACAGgtaagatttctggctgtgagtccctcttgacctcccagcttcccagcctc Alignment from Exonerate_protein2genome CCCACCTCTACTTG GGCTCTGAGTGGAATGCTGCC-AACCTGGAGGAACTTCAGAAAAACAG CACACCTCTACTTGgtatgtggtccttttattcatcattatgttttacagGGCTCTGAATGGAATGCTGCCCAACCTAGAGGAGCTCCAAAAGAACAGgtaagatttctggctgtgagtccctcttgacctcccagcttcccagcctc Alignment from Exonerate_coding2genome CCCACCTCTACTTG CACACCTCTACTTGgtatgtggtccttttattcatcattatgttttacagggctctgaatggaatgctgcccaacctagaggagctccaaaagaacaggtaagatttctggctgtgagtccctcttgacctcccagcttcccagcctc Alignment from GeneWise CCCACCTCTACTTG------------------------------------GGCTCTGAGTGGAATGCT-GCCAACCTGGAGGAACTTCAGAAAAACAG CACACCTCTACTTGGTATGTGGTCCTTTTATTCATCATTATGTTTTACAGGGCTCTGAATGGAATGCTGCCCAACCTAGAGGAGCTCCAAAAGAACAGgtaagatttctggctgtgagtccctcttgacctcccagcttcccagcctc #### Ssh3_ID447_9 --> 0 - 0 Original Alignment ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAG-ATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA atttctatcaacaatgatacacttaaatcccatctttcctgtcctctcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTTTA------TACCGTGACTTTATTGACAATCAGCATGCTGCTTCTCATGGCCCAGCAGGATCAGACATCTCGCATCTACCCACACCTCTACTTGgtaggaggtccttttattgctctacttttcttttagGGCTCTGAATGGAA Alignment from CESAR ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAG-ATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA atttctatcaacaatgatacacttaaatcccatctttcctgtcctctcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTTTA------TACCGTGACTTTATTGACAATCAGCATGCTGCTTCTCATGGCCCAGCAGGATCAGACATCTCGCATCTACCCACACCTCTACTTGgtaggaggtccttttattcatcattatgttttacagGGCTCTGAATGGAA Alignment from Spaln_aa2Genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAG-ATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA atttctatcaacaatgatacacttaaatcccatctttcctgtcctctcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTTTA------TACCGTGACTTTATTGACAATCAGcATGCTGCTTCTCATGGCCCAGCAGGATCAGACATCTCGCATCTACCCACACCTCTACTTGgtaggaggtccttttattgctctacttttcttttagGGCTCTGAATGGAA Alignment from Spaln_nt2Genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAG-ATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA atttctatcaacaatgatacacttaaatcccatctttcctgtcctctcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTTT------ATACCGTGACTTTATTGACAATCAGCATGCTGCTTCTCATGGCCCAGCAGGATCAGACATCTCGCATCTACCCACACCTCTACTTGgtaggaggtccttttattgctctacttttcttttagGGCTCTGAATGGAA Alignment from Pairagon ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAG-ATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA atttctatcaacaatgatacacttaaatcccatctttcctgtcctctcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTTT------ATACCGTGACTTTATTGACAATCAGCATGCTGCTTCTCATGGCCCAGCAGGATCAGACATCTCGCATCTACCCACACCTCTACTTGgtaggaggtccttttattgctctacttttcttttagGGCTCTGAATGGAA Alignment from Exonerate_protein2genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAG-ATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA atttctatcaacaatgatacacttaaatcccatctttcctgtcctctcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTTTA------TACCGTGACTTTATTGACAATCAGCATGCTGCTTCTCATGGCCCAGCAGGATCAGACATCTCGCATCTACCCACACCTCTACTTGgtaggaggtccttttattgctctacttttcttttagGGCTCTGAATGGAA Alignment from Exonerate_coding2genome ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAACCAG-ATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA atttctatcaacaatgatacacttaaatcccatctttcctgtcctctcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTTTA------TACCGTGACTTTATTGACAATCAGCATGCTGCTTCTCATGGCCCAGCAGGATCAGACATCTCGCATCTACCCACACCTCTACTTGgtaggaggtccttttattgctctacttttcttttagGGCTCTGAATGGAA Alignment from GeneWise ATCCGTCAGGCCCTGGAGCTGCGTCTGGGATGTCCTCTCCAGCAGTACCGTGACTTTATTGACAAC-CAGATGTTGCTGCTCATGGCCCAGCAAGACCGGGCCTCTCGCATCTTCCCCCACCTCTACTTG GGCTCTGAGTGGAA atttctatcaacaatgatacacttaaatcccatctttcctgtcctctcagCTCCATCAAGCCTTAGAACTACACCTTGGATGTCCTTTA------TACCGTGACTTTATTGACAATCAGCATGCTGCTTCTCATGGCCCAGCAGGATCAGACATCTCGCATCTACCCACACCTCTACTTGgtaggaggtccttttattgctctacttttcttttagGGCTCTGAATGGAA #### Ssh3_ID450_6 --> 1 - 2 Original Alignment gGGCTTCAGTGTGACATCT-GGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGtg ccccactgatcacctgctctcggggtctgtaatgaggaatgtttttcaagcGGCTTAAGTGTGACGTCTCGGTGGCCAAAGCCGAATCTTCAAGCCTCTTTCTATCCAGACTATGtggtaagaggtgcacagctataaggttccccagcacacttggttgaccatcc Alignment from CESAR gGGCTTCAGTGTGACATCT-GGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGtg ccccactgatcacctgctctcggggtctgtaatgaggaatgtttttcaagcGGCTTAAGTGTGACGTCTCGGTGGCCAAAGCCGAATCTTCAAGCCTCTTTCTATCCAGACTATGtggtaagaggtgcacagctataaggttccccagcacacttggttgaccatcc Alignment from Spaln_aa2Genome GGGCTTCAGTGTGACATCT-GGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG ccccactgatcacctgctctcggggtctgtaatgaggaatgtttttcaagCGGCTTAAGTGTGACGTCTcGGTGGCCAAAGCCGAATCTTCAAGCCTCTTTCTATCCAGACTATGTGgtaagaggtgcacagctataaggttccccagcacacttggttgaccatcc Alignment from Spaln_nt2Genome GGGCTTCAGTGTGACATCT-GGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG ccccactgatcacctgctctcggggtctgtaatgaggaatgtttttcaagCGGCTTAAGTGTGACGTCTCGGTGGCCAAAGCCGAATCTTCAAGCCTCTTTCTATCCAGACTATGTGgtaagaggtgcacagctataaggttccccagcacacttggttgaccatcc Alignment from Pairagon GGGCTTCAGTGTGACATCT-GGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG ccccactgatcacctgctctcggggtctgtaatgaggaatgtttttcaagCGGCTTAAGTGTGACGTCTCGGTGGCCAAAGCCGAATCTTCAAGCCTCTTTCTATCCAGACTATGTGgtaagaggtgcacagctataaggttccccagcacacttggttgaccatcc Alignment from Exonerate_protein2genome GGGCTTCAGTGTGACATCT-GGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG ccccactgatcacctgctctcggggtctgtaatgaggaatgtttttcaagCGGCTTAAGTGTGACGTCTCGGTGGCCAAAGCCGAATCTTCAAGCCTCTTTCTATCCAGACTATGTGgtaagaggtgcacagctataaggttccccagcacacttggttgaccatcc Alignment from Exonerate_coding2genome GGGCTTCAGTGTGACATCT-GGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG ccccactgatcacctgctctcggggtctgtaatgaggaatgtttttcaagCGGCTTAAGTGTGACGTCTCGGTGGCCAAAGCCGAATCTTCAAGCCTCTTTCTATCCAGACTATGTGgtaagaggtgcacagctataaggttccccagcacacttggttgaccatcc Alignment from GeneWise GGGCTTCAGTGTGACA-TCTGGTGGTCAAAGCCGAATCTTCAAGCCTGTCTCTATCCAGACCATGTG ccccactgatcacctgctctcggggtctgtaatgaggaatgtttttcaagCGGCTTAAGTGTGACGTCTCGGTGGCCAAAGCCGAATCTTCAAGCCTCTTTCTATCCAGACTATGTGgtaagaggtgcacagctataaggttccccagcacacttggttgaccatcc #### Stip1_ID1989_12 --> 2 - 0 Original Alignment tcAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTAC-CAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG acagagtgagagaagtgtagtaggaccaaccttctggctgctgaccacagatAAAGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGACTATACAAAAGCGATGCAC------CCAAAAGGCATTAGACCTGGACTCCAGTTGCAAAgtgagttgctgctagcttatacacagatgcctgtttatgtgacctagggt Alignment from CESAR tcAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTAC-CAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG acagagtgagagaagtgtagtaggaccaaccttctggctgctgaccacagatAAAGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGACTATACAAAAGCGATG------CACCCAAAAGGCATTAGACCTGGACTCCAGTTGCAAAgtgagttgctgctagcttatacacagatgcctgtttatgtgacctagggt Alignment from Spaln_aa2Genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG acagagtgagagaagtgtagtaggaccaaccttctggctgctgaccacagATAAAGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGACTATACAAAAGCGATGCACC-----CAAAAGGCATTAGACCTGGACTCCAGTTGCAAAgtgagttgctgctagcttatacacagatgcctgtttatgtgacctagggt Alignment from Spaln_nt2Genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG acagagtgagagaagtgtagtaggaccaaccttctggctgctgaccacagATAAAGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGACTATACAAAAGCGATGCA-----CCCAAAAGGCATTAGACCTGGACTCCAGTTGCAAAgtgagttgctgctagcttatacacagatgcctgtttatgtgacctagggt Alignment from Pairagon TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG acagagtgagagaagtgtagtaggaccaaccttctggctgctgaccacagATAAAGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGACTATACAAAAGCGATGCAC-----CCAAAAGGCATTAGACCTGGACTCCAGTTGCAAAgtgagttgctgctagcttatacacagatgcctgtttatgtgacctagggt Alignment from Exonerate_protein2genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAA-GCGTTAGACCTGGACTCCAGCTGTAAG acagagtgagagaagtgtagtaggaccaaccttctggctgctgaccacagATAAAGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGACTATACAAAAGCGATG------CACCCAAAAGGCATTAGACCTGGACTCCAGTTGCAAAgtgagttgctgctagcttatacacagatgcctgtttatgtgacctagggt Alignment from Exonerate_coding2genome TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAA-GCGTTAGACCTGGACTCCAGCTGTAAG acagagtgagagaagtgtagtaggaccaaccttctggctgctgaccacagATAAAGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGACTATACAAAAGCGATG------CACCCAAAAGGCATTAGACCTGGACTCCAGTTGCAAAgtgagttgctgctagcttatacacagatgcctgtttatgtgacctagggt Alignment from GeneWise TCAAGGGTTATACACGGAAAGCAGCTGCTCTGGAAGCCATGAAGGACTATACAAAAGCCATGGATGTGTACCAAAAAGCGTTAGACCTGGACTCCAGCTGTAAG acagagtgagagaagtgtagtaggaccaaccttctggctgctgaccacagATAAAGGTTATACCCGACAAGCAGCTGCTTTAGAAGCCATGAAGGACTATACAAAAGCGATGC--ACC---CAAAAGGCATTAGACCTGGACTCCAGTTGCAAAgtgagttgctgctagcttatacacagatgcctgtttatgtgacctagggt #### Stip1_ID1994_7 --> 2 - 2 Original Alignment ctGTGCACTTTGAGAAG-GGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCaa cttgatttgtctggcttttttatctaactaacagttgttctcttttacagctGTGCACTTTGACAAGCGGTGATTATAATGAATGTCGGGAGCTCTGTGAAAAGGCTATAGAGGTTGGAAGAGAGAACCGAGAGGACTACCGGCAGATTGCTaagtcagtcatcaaattcagaggcttaggcaagacacctttcttggtgccta Alignment from CESAR ctGTGCACTTTGAGAAG-GGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCaa cttgatttgtctggcttttttatctaactaacagttgttctcttttacagctGTGCACTTTGACAAGCGGTGATTATAATGAATGTCGGGAGCTCTGTGAAAAGGCTATAGAGGTTGGAAGAGAGAACCGAGAGGACTACCGGCAGATTGCTaagtcagtcatcaaattcagaggcttaggcaagacacctttcttggtgccta Alignment from Spaln_aa2Genome CTGTGCACTTTGAGAAG-GGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA cttgatttgtctggcttttttatctaactaacagttgttctcttttacagCTGTGCACTTTGACAAGcGGTGATTATAATGAATGTCGGGAGCTCTGTGAAAAGGCTATAGAGGTTGGAAGAGAGAACCGAGAGGACTACCGGCAGATTGCTAAgtcagtcatcaaattcagaggcttaggcaagacacctttcttggtgccta Alignment from Spaln_nt2Genome CTGTGCACTTTGAGAAG-GGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA cttgatttgtctggcttttttatctaactaacagttgttctcttttacagCTGTGCACTTTGACAAGCGGTGATTATAATGAATGTCGGGAGCTCTGTGAAAAGGCTATAGAGGTTGGAAGAGAGAACCGAGAGGACTACCGGCAGATTGCTAAgtcagtcatcaaattcagaggcttaggcaagacacctttcttggtgccta Alignment from Pairagon CTGTGCACTTTGAGAAG-GGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA cttgatttgtctggcttttttatctaactaacagttgttctcttttacagCTGTGCACTTTGACAAGCGGTGATTATAATGAATGTCGGGAGCTCTGTGAAAAGGCTATAGAGGTTGGAAGAGAGAACCGAGAGGACTACCGGCAGATTGCTAAgtcagtcatcaaattcagaggcttaggcaagacacctttcttggtgccta Alignment from Exonerate_protein2genome CTGTGCACTTTGAGAAG-GGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA cttgatttgtctggcttttttatctaactaacagttgttctcttttacagCTGTGCACTTTGACAAGCGGTGATTATAATGAATGTCGGGAGCTCTGTGAAAAGGCTATAGAGGTTGGAAGAGAGAACCGAGAGGACTACCGGCAGATTGCTAAgtcagtcatcaaattcagaggcttaggcaagacacctttcttggtgccta Alignment from Exonerate_coding2genome CTGTGCACTTTGAGAAG-GGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA cttgatttgtctggcttttttatctaactaacagttgttctcttttacagCTGTGCACTTTGACAAGCGGTGATTATAATGAATGTCGGGAGCTCTGTGAAAAGGCTATAGAGGTTGGAAGAGAGAACCGAGAGGACTACCGGCAGATTGCTAAgtcagtcatcaaattcagaggcttaggcaagacacctttcttggtgccta Alignment from GeneWise GCACTTTGAGAAGGGCGACTATAACAAATGCCGGGAGCTCTGTGAGAAGGCCATTGAAGTGGGCAGAGAGAACCGAGAGGACTACCGGCAGATCGCCAA cttgatttgtctggcttttttatctaactaacagttgttctcttttacagctgtgcactttgacaagC------------GGTGATTATAATGAATGTCGGGAGCTCTGTGAAAAGGCTATAGAGGTTGGAAGAGAGAACCGAGAGGACTACCGGCAGATTGCTAAgtcagtcatcaaattcagaggcttaggcaagacacctttcttggtgccta #### Stx5a_ID2331_3 --> 1 - 1 Original Alignment gCGCATTGGGAAA-GATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCt atggcatcacctcagtttttcacacatcctctcatgccttcaacccgcaggCGCATAGGGAAACGATCTGAGTAATACATTTGCCAAACTGGAGAAGTTAACAATCtgtaaagatctgctaggcctttcaaggtgagacttaaatccctgcaccctg Alignment from CESAR gCGCATTGGGAAA-GATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCt atggcatcacctcagtttttcacacatcctctcatgccttcaacccgcaggCGCATAGGGAAACGATCTGAGTAATACATTTGCCAAACTGGAGAAGTTAACAATCtgtaaagatctgctaggcctttcaaggtgagacttaaatccctgcaccctg Alignment from Spaln_aa2Genome GGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCT atggcatcacctcagtttttcacacatcctctcatgccttcaacccgcaggcgcatagGGAAACGATCTGAGTAATACATTTGCCAAACTGGAGAAGTTAACAATCTgtaaagatctgctaggcctttcaaggtgagacttaaatccctgcaccctg Alignment from Spaln_nt2Genome GCGCATTGGGAAA-GATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCT atggcatcacctcagtttttcacacatcctctcatgccttcaacccgcagGCGCATAGGGAAACGATCTGAGTAATACATTTGCCAAACTGGAGAAGTTAACAATCTgtaaagatctgctaggcctttcaaggtgagacttaaatccctgcaccctg Alignment from Pairagon GCGCATTGGGAAA-GATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCT atggcatcacctcagtttttcacacatcctctcatgccttcaacccgcagGCGCATAGGGAAACGATCTGAGTAATACATTTGCCAAACTGGAGAAGTTAACAATCTgtaaagatctgctaggcctttcaaggtgagacttaaatccctgcaccctg Alignment from Exonerate_protein2genome GCGCATTGGGAAA-GATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCT atggcatcacctcagtttttcacacatcctctcatgccttcaacccgcagGCGCATAGGGAAACGATCTGAGTAATACATTTGCCAAACTGGAGAAGTTAACAATCTgtaaagatctgctaggcctttcaaggtgagacttaaatccctgcaccctg Alignment from Exonerate_coding2genome GCGCATTGGGAAA-GATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCT atggcatcacctcagtttttcacacatcctctcatgccttcaacccgcagGCGCATAGGGAAACGATCTGAGTAATACATTTGCCAAACTGGAGAAGTTAACAATCTgtaaagatctgctaggcctttcaaggtgagacttaaatccctgcaccctg Alignment from GeneWise GGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAACAATCT atggcatcacctcagtttttcacacatcctctcatgccttcaacccgcaggcgcatagGGAAACGATCTGAGTAATACATTTGCCAAACTGGAGAAGTTAACAATCTgtaaagatctgctaggcctttcaaggtgagacttaaatccctgcaccctg #### Stx5a_ID2334_6 --> 0 - 0 Original Alignment TCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTT-CTAGAAGTGAGGACTGAG gggggggaaaacaacataaattctcaactttctcctccccacccccatagTCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTTCCTAGAAGTGAGGACTGAGgtaaaagggataagtagtagggttaaggagtttttttagggtataccaca Alignment from CESAR TCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTT-CTAGAAGTGAGGACTGAG gggggggaaaacaacataaattctcaactttctcctccccacccccatagTCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTTCCTAGAAGTGAGGACTGAGgtaaaagggataagtagtagggttaaggagtttttttagggtataccaca Alignment from Spaln_aa2Genome TCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTT-CTAGAAGTGAGGACTGAG gggggggaaaacaacataaattctcaactttctcctccccacccccatagTCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTTcCTAGAAGTGAGGACTGAGgtaaaagggataagtagtagggttaaggagtttttttagggtataccaca Alignment from Spaln_nt2Genome TCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTT-CTAGAAGTGAGGACTGAG gggggggaaaacaacataaattctcaactttctcctccccacccccatagTCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTTCCTAGAAGTGAGGACTGAGgtaaaagggataagtagtagggttaaggagtttttttagggtataccaca Alignment from Pairagon TCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTT-CTAGAAGTGAGGACTGAG gggggggaaaacaacataaattctcaactttctcctccccacccccatagTCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTTCCTAGAAGTGAGGACTGAGgtaaaagggataagtagtagggttaaggagtttttttagggtataccaca Alignment from Exonerate_protein2genome TCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTT-CTAGAAGTGAGGACTGAG gggggggaaaacaacataaattctcaactttctcctccccacccccatagTCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTTCCTAGAAGTGAGGACTGAGgtaaaagggataagtagtagggttaaggagtttttttagggtataccaca Alignment from Exonerate_coding2genome TCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTT-CTAGAAGTGAGGACTGAG gggggggaaaacaacataaattctcaactttctcctccccacccccatagTCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTTCCTAGAAGTGAGGACTGAGgtaaaagggataagtagtagggttaaggagtttttttagggtataccaca Alignment from GeneWise TCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCA-GTTCTAGAAGTGAGGACTGAG gggggggaaaacaacataaattctcaactttctcctccccacccccatagTCAAAGCTGGCTTCTATGTCCAATGACTTCAAGTCAGTTCCTAGAAGTGAGGACTGAGgtaaaagggataagtagtagggttaaggagtttttttagggtataccaca #### Suv420h1_ID146_8 --> 0 - 2 Original Alignment TTTGTGTCAACTGGTCGAGATACAGCATGCGTTAAGGCTCTGAGAGATATTGAACCTGGAGAAGAAATTTCTTGTTACTATGGAGATGGCTTTTTT-GGAGAAAATAATGAGTTCTGCGAATGTTATACTTGTGAAag tatttggctggcttagtgtcaggtgttagactgtctgttcactcttgcagTTTGTGTCAACTGGACGAGATACAGTATGTGTGAAGGCTCTGAGAGATATTGAACCTGGAGAAGAGATCTCTTGTTACTATGGAGATGGGTTTTTTCGGAGAAAATAATGAGTTCTGTGAATGTTATACTTGTGAAaggtattgacccaagccctctacctatcctccatggaagagtattgtggcaa Alignment from CESAR TTTGTGTCAACTGGTCGAGATACAGCATGCGTTAAGGCTCTGAGAGATATTGAACCTGGAGAAGAAATTTCTTGTTACTATGGAGATGGCTTTTTT-GGAGAAAATAATGAGTTCTGCGAATGTTATACTTGTGAAag tatttggctggcttagtgtcaggtgttagactgtctgttcactcttgcagTTTGTGTCAACTGGACGAGATACAGTATGTGTGAAGGCTCTGAGAGATATTGAACCTGGAGAAGAGATCTCTTGTTACTATGGAGATGGGTTTTTTCGGAGAAAATAATGAGTTCTGTGAATGTTATACTTGTGAAaggtattgacccaagccctctacctatcctccatggaagagtattgtggcaa Alignment from Spaln_aa2Genome TTTGTGTCAACTGGTCGAGATACAGCATGCGTTAAGGCTCTGAGAGATATTGAACCTGGAGAAGAAATTTCTTGTTACTATGGAGATGGCTTT-TTTGGAGAAAATAATGAGTTCTGCGAATGTTATACTTGTGAAAG tatttggctggcttagtgtcaggtgttagactgtctgttcactcttgcagTTTGTGTCAACTGGACGAGATACAGTATGTGTGAAGGCTCTGAGAGATATTGAACCTGGAGAAGAGATCTCTTGTTACTATGGAGATGGGTTTtTTCGGAGAAAATAATGAGTTCTGTGAATGTTATACTTGTGAAAGgtattgacccaagccctctacctatcctccatggaagagtattgtggcaa Alignment from Spaln_nt2Genome TTTGTGTCAACTGGTCGAGATACAGCATGCGTTAAGGCTCTGAGAGATATTGAACCTGGAGAAGAAATTTCTTGTTACTATGGAGAT-GGCTTTTTTGGAGAAAATAATGAGTTCTGCGAATGTTATACTTGTGAAAG tatttggctggcttagtgtcaggtgttagactgtctgttcactcttgcagTTTGTGTCAACTGGACGAGATACAGTATGTGTGAAGGCTCTGAGAGATATTGAACCTGGAGAAGAGATCTCTTGTTACTATGGAGATGGGTTTTTTCGGAGAAAATAATGAGTTCTGTGAATGTTATACTTGTGAAAGgtattgacccaagccctctacctatcctccatggaagagtattgtggcaa Alignment from Pairagon TTTGTGTCAACTGGTCGAGATACAGCATGCGTTAAGGCTCTGAGAGATATTGAACCTGGAGAAGAAATTTCTTGTTACTATGGAGATGGCTTTTTT-GGAGAAAATAATGAGTTCTGCGAATGTTATACTTGTGAAAG tatttggctggcttagtgtcaggtgttagactgtctgttcactcttgcagTTTGTGTCAACTGGACGAGATACAGTATGTGTGAAGGCTCTGAGAGATATTGAACCTGGAGAAGAGATCTCTTGTTACTATGGAGATGGGTTTTTTCGGAGAAAATAATGAGTTCTGTGAATGTTATACTTGTGAAAGgtattgacccaagccctctacctatcctccatggaagagtattgtggcaa Alignment from Exonerate_protein2genome TTTGTGTCAACTGGTCGAGATACAGCATGCGTTAAGGCTCTGAGAGATATTGAACCTGGAGAAGAAATTTCTTGTTACTATGGAGAT-GGCTTTTTTGGAGAAAATAATGAGTTCTGCGAATGTTATACTTGTGAAAG tatttggctggcttagtgtcaggtgttagactgtctgttcactcttgcagTTTGTGTCAACTGGACGAGATACAGTATGTGTGAAGGCTCTGAGAGATATTGAACCTGGAGAAGAGATCTCTTGTTACTATGGAGATGGGTTTTTTCGGAGAAAATAATGAGTTCTGTGAATGTTATACTTGTGAAAGgtattgacccaagccctctacctatcctccatggaagagtattgtggcaa Alignment from Exonerate_coding2genome TTTGTGTCAACTGGTCGAGATACAGCATGCGTTAAGGCTCTGAGAGATATTGAACCTGGAGAAGAAATTTCTTGTTACTATGGAGAT-GGCTTTTTTGGAGAAAATAATGAGTTCTGCGAATGTTATACTTGTGAAAG tatttggctggcttagtgtcaggtgttagactgtctgttcactcttgcagTTTGTGTCAACTGGACGAGATACAGTATGTGTGAAGGCTCTGAGAGATATTGAACCTGGAGAAGAGATCTCTTGTTACTATGGAGATGGGTTTTTTCGGAGAAAATAATGAGTTCTGTGAATGTTATACTTGTGAAAGgtattgacccaagccctctacctatcctccatggaagagtattgtggcaa Alignment from GeneWise TTTGTGTCAACTGGTCGAGATACAGCATGCGTTAAGGCTCTGAGAGATATTGAACCTGGAGAAGAAATTTCTTGTTACTATGGAGATGGCTTTTTT-GGAGAAAATAATGAGTTCTGCGAATGTTATACTTGTGAAAG tatttggctggcttagtgtcaggtgttagactgtctgttcactcttgcagTTTGTGTCAACTGGACGAGATACAGTATGTGTGAAGGCTCTGAGAGATATTGAACCTGGAGAAGAGATCTCTTGTTACTATGGAGATGGGTTTTTTCGGAGAAAATAATGAGTTCTGTGAATGTTATACTTGTGAAAGgtattgacccaagccctctacctatcctccatggaagagtattgtggcaa #### Syvn1_ID1384_3 --> 0 - 0 Original Alignment CACCTTCTGGAACGGTCCTGG-TACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT ggcagggtctctcaatgctgtttcatacattttttttccttctcaaaaagCACCTCCTGGAACGGTCCTGGCTATGCTGTCACAGAAATTTGTTTGGCCTTTACTGTTATTGGAGATGACTCAAGTCCCCGATTTGTGGCACTCTTTATGCTTCTTCTCTTCCTCAAGTGCTTCCAGTGGCTAGCTGAAGATCATGTGGATTTTgtgagcttaaatctcctgatgaacatgtgggtgtctctaccgcgctgtgc Alignment from CESAR CACCTTCTGGAACGGTCCTGG-TACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT ggcagggtctctcaatgctgtttcatacattttttttccttctcaaaaagCACCTCCTGGAACGGTCCTGGCTATGCTGTCACAGAAATTTGTTTGGCCTTTACTGTTATTGGAGATGACTCAAGTCCCCGATTTGTGGCACTCTTTATGCTTCTTCTCTTCCTCAAGTGCTTCCAGTGGCTAGCTGAAGATCATGTGGATTTTgtgagcttaaatctcctgatgaacatgtgggtgtctcttgttctgtgcct Alignment from Spaln_aa2Genome CACCTTCTGGAACGGTCCTGG-TACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT ggcagggtctctcaatgctgtttcatacattttttttccttctcaaaaagCACCTCCTGGAACGGTCCTGGcTATGCTGTCACAGAAATTTGTTTGGCCTTTACTGTTATTGGAGATGACTCAAGTCCCCGATTTGTGGCACTCTTTATGCTTCTTCTCTTCCTCAAGTGCTTCCAGTGGCTAGCTGAAGATCATGTGGATTTTgtgagcttaaatctcctgatgaacatgtgggtgtctctaccgcgctgtgc Alignment from Spaln_nt2Genome CACCTTCTGGAACGGTCCTGG-TACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT ggcagggtctctcaatgctgtttcatacattttttttccttctcaaaaagCACCTCCTGGAACGGTCCTGGCTATGCTGTCACAGAAATTTGTTTGGCCTTTACTGTTATTGGAGATGACTCAAGTCCCCGATTTGTGGCACTCTTTATGCTTCTTCTCTTCCTCAAGTGCTTCCAGTGGCTAGCTGAAGATCATGTGGATTTTgtgagcttaaatctcctgatgaacatgtgggtgtctctaccgcgctgtgc Alignment from Pairagon ------------------------------------------------AGCACCTTCTGGAACGGTCCTGG-TACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT GGCAGGGTCTCTCAATGCTGTTTCATACATTTTTTTTCCTTCTCAAAAAGCACCTCCTGGAACGGTCCTGGCTATGCTGTCACAGAAATTTGTTTGGCCTTTACTGTTATTGGAGATGACTCAAGTCCCCGATTTGTGGCACTCTTTATGCTTCTTCTCTTCCTCAAGTGCTTCCAGTGGCTAGCTGAAGATCATGTGGATTTTgtgagcttaaatctcctgatgaacatgtgggtgtctctaccgcgctgtgc Alignment from Exonerate_protein2genome CACCTTCTGGAACGGTCCTGG-TACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT ggcagggtctctcaatgctgtttcatacattttttttccttctcaaaaagCACCTCCTGGAACGGTCCTGGCTATGCTGTCACAGAAATTTGTTTGGCCTTTACTGTTATTGGAGATGACTCAAGTCCCCGATTTGTGGCACTCTTTATGCTTCTTCTCTTCCTCAAGTGCTTCCAGTGGCTAGCTGAAGATCATGTGGATTTTgtgagcttaaatctcctgatgaacatgtgggtgtctctaccgcgctgtgc Alignment from Exonerate_coding2genome CACCTTCTGGAACGGTCCTGG-TACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT ggcagggtctctcaatgctgtttcatacattttttttccttctcaaaaagCACCTCCTGGAACGGTCCTGGCTATGCTGTCACAGAAATTTGTTTGGCCTTTACTGTTATTGGAGATGACTCAAGTCCCCGATTTGTGGCACTCTTTATGCTTCTTCTCTTCCTCAAGTGCTTCCAGTGGCTAGCTGAAGATCATGTGGATTTTgtgagcttaaatctcctgatgaacatgtgggtgtctctaccgcgctgtgc Alignment from GeneWise --------------------------------------------------CACCTTCTGGAACGGTCCTGG-TACGCTGTTACTGAGACTTGTTTGGCCTTCACCGTTTTTCGGGATGACTTCAGCCCTCGCTTTGTGGCGCTCTTTACGCTGCTCCTCTTCCTCAAATGTTTCCATTGGTTGGCTGAAGACCGTGTGGACTTT-------------------------------------------------- GGCAGGGTCTCTCAATGCTGTTTCATACATTTTTTTTCCTTCTCAAAAAGCACCTCCTGGAACGGTCCTGGCTATGCTGTCACAGAAATTTGTTTGGCCTTTACTGTTATTGGAGATGACTCAAGTCCCCGATTTGTGGCACTCTTTATGCTTCTTCTCTTCCTCAAGTGCTTCCAGTGGCTAGCTGAAGATCATGTGGATTTTGTGAGCTTAAATCTCCTGATGAACATGTGGGTGTCTCTACCGCGCTGTGC #### Syvn1_ID1386_5 --> 2 - 0 Original Alignment ctCTCATGTTTCTCCTGGGT-ATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tgtcaggcataggtcaatagaggccttgtctttttttttttttttaaaagctCTCATGTTTCTCCTGGGCCATCCTTGACTTCCTCTTTGTCAGCCATGCTTATCACAGCATCCTGACTCGCGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtactcccgacctatgagatagcaacctaactgtgctttcagtccctcac Alignment from CESAR ctCTCATGTTTCTCCTGGGT-ATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tgtcaggcataggtcaatagaggccttgtctttttttttttttttaaaagctCTCATGTTTCTCCTGGGCCATCCTTGACTTCCTCTTTGTCAGCCATGCTTATCACAGCATCCTGACTCGCGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtactcccgacctatgagatagcaacctaactgtgctttcagtccctcac Alignment from Spaln_aa2Genome CTCTCATGTTTCTCCTGGGT-ATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tgtcaggcataggtcaatagaggccttgtctttttttttttttttaaaagCTCTCATGTTTCTCCTGGGCcATCCTTGACTTCCTCTTTGTCAGCCATGCTTATCACAGCATCCTGACTCGCGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtactcccgacctatgagatagcaacctaactgtgctttcagtccctcac Alignment from Spaln_nt2Genome CTCTCATGTTTCTCCTGGGT-ATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tgtcaggcataggtcaatagaggccttgtctttttttttttttttaaaagCTCTCATGTTTCTCCTGGGCCATCCTTGACTTCCTCTTTGTCAGCCATGCTTATCACAGCATCCTGACTCGCGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtactcccgacctatgagatagcaacctaactgtgctttcagtccctcac Alignment from Pairagon CTCTCATGTTTCTCCTGGG-TATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tgtcaggcataggtcaatagaggccttgtctttttttttttttttaaaagCTCTCATGTTTCTCCTGGGCCATCCTTGACTTCCTCTTTGTCAGCCATGCTTATCACAGCATCCTGACTCGCGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtactcccgacctatgagatagcaacctaactgtgctttcagtccctcac Alignment from Exonerate_protein2genome CTCTCATGTTTCTCCTGGGT-ATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tgtcaggcataggtcaatagaggccttgtctttttttttttttttaaaagCTCTCATGTTTCTCCTGGGCCATCCTTGACTTCCTCTTTGTCAGCCATGCTTATCACAGCATCCTGACTCGCGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtactcccgacctatgagatagcaacctaactgtgctttcagtccctcac Alignment from Exonerate_coding2genome CTCTCATGTTTCTCCTGGGT-ATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tgtcaggcataggtcaatagaggccttgtctttttttttttttttaaaagCTCTCATGTTTCTCCTGGGCCATCCTTGACTTCCTCTTTGTCAGCCATGCTTATCACAGCATCCTGACTCGCGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtactcccgacctatgagatagcaacctaactgtgctttcagtccctcac Alignment from GeneWise GTCTCTCTCATGTTTCTCCTGGGTATCCTGGACTTCCTCTTCGTCAGCCACGCTTATCACAGCATCCTGACCCGTGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGAG tgtcaggcataggtcaatagaggccttgtctttttttttttttttaaaagCTCTCA---TGTTTCTCCTGGGCCATCCTTGACTTCCTCTTTGTCAGCCATGCTTATCACAGCATCCTGACTCGCGGGGCTTCTGTGCAGCTGGTATTTGGCTTTGTAgtactcccgacctatgagatagcaacctaactgtgctttcagtccctcac #### Syvn1_ID1388_7 --> 2 - 2 Original Alignment gcTTCATCAAGGTCCTGCTGTAC-ATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGag ggtgcatctgccaaccttgcagttggcaggactcttggctttgtccccaggcTTCATCAAGGTGCTGCTGTATCATGGCCTTCATGACCATCATGATCAAGGTGCACACATTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGaggtacactaggccttatatttgttagtttgtcactttgatatttgtcttca Alignment from CESAR gcTTCATCAAGGTCCTGCTGTAC-ATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGag ggtgcatctgccaaccttgcagttggcaggactcttggctttgtccccaggcTTCATCAAGGTGCTGCTGTATCATGGCCTTCATGACCATCATGATCAAGGTGCACACATTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGaggtacactaggccttatatttgttagtttgtcactttgatatttgtcttca Alignment from Spaln_aa2Genome GCTTCATCAAGGTCCTGCTGTAC-ATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgcatctgccaaccttgcagttggcaggactcttggctttgtccccagGCTTCATCAAGGTGCTGCTGTATcATGGCCTTCATGACCATCATGATCAAGGTGCACACATTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtacactaggccttatatttgttagtttgtcactttgatatttgtcttca Alignment from Spaln_nt2Genome GCTTCATCAAGGTCCTGCTGTA-CATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgcatctgccaaccttgcagttggcaggactcttggctttgtccccagGCTTCATCAAGGTGCTGCTGTATCATGGCCTTCATGACCATCATGATCAAGGTGCACACATTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtacactaggccttatatttgttagtttgtcactttgatatttgtcttca Alignment from Pairagon GCTTCATCAAGGTCCTGCTGTA-CATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgcatctgccaaccttgcagttggcaggactcttggctttgtccccagGCTTCATCAAGGTGCTGCTGTATCATGGCCTTCATGACCATCATGATCAAGGTGCACACATTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtacactaggccttatatttgttagtttgtcactttgatatttgtcttca Alignment from Exonerate_protein2genome GCTTCATCAAGGTCCTGCTGTAC-ATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgcatctgccaaccttgcagttggcaggactcttggctttgtccccagGCTTCATCAAGGTGCTGCTGTATCATGGCCTTCATGACCATCATGATCAAGGTGCACACATTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtacactaggccttatatttgttagtttgtcactttgatatttgtcttca Alignment from Exonerate_coding2genome GCTTCATCAAGGTCCTGCTGTAC-ATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgcatctgccaaccttgcagttggcaggactcttggctttgtccccagGCTTCATCAAGGTGCTGCTGTATCATGGCCTTCATGACCATCATGATCAAGGTGCACACATTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtacactaggccttatatttgttagtttgtcactttgatatttgtcttca Alignment from GeneWise GCTTCATCAAGGTCCTGCTGTAC-ATGGCCTTCATGACCATCATGATCAAGGTGCACACATTCCCACTCTTTGCCATTAGGCCCATGTACCTGGCCATGAG ggtgcatctgccaaccttgcagttggcaggactcttggctttgtccccagGCTTCATCAAGGTGCTGCTGTATCATGGCCTTCATGACCATCATGATCAAGGTGCACACATTTCCACTGTTTGCCATTAAGCCCATGTACCTGGCCATGAGgtacactaggccttatatttgttagtttgtcactttgatatttgtcttca #### Syvn1_ID1393_12 --> 2 - 1 Original Alignment ccGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGT-CCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTg gtaattgacccacttccaatttaccttagctgttctccttgcttctctagctGTTTCTCAGCCTAGTGGAGCAGCAACCACTCCAGCTTCTAGCACAGGTCCCTCTGCCCCAGCATCCGGATCTGTACCAAGTGCAGAGGCTGGTCCCTGCCCCTGATTTCCCTTTCCCCCCTCCCTGGATGGGGATGCCTCTACCTCCACCATTTggtagtttgcccatcaccctaccctctttggcatgatgtggaatactaagc Alignment from CESAR ccGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGT-CCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTg gtaattgacccacttccaatttaccttagctgttctccttgcttctctagctGTTTCTCAGCCTAGTGGAGCAGCAACCACTCCAGCTTCTAGCACAGGTCCCTCTGCCCCAGCATCCGGATCTGTACCAAGTGCAGAGGCTGGTCCCTGCCCCTGATTTCCCTTTCCCCCCTCCCTGGATGGGGATGCCTCTACCTCCACCATTTggtagtttgcccatcaccctaccctctttggcatgatgtggaatactaagc Alignment from Spaln_aa2Genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCCGGCTTCCCTTTCCCTCCT-CCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG gtaattgacccacttccaatttaccttagctgttctccttgcttctctagCTGTTTCTCAGCCTAGTGGAGCAGCAACCACTCCAGCTTCTAGCACAGGTCCCTCTGCCCCAGCATCCGGATCTGTACCAAGTGCAGAGGCTGGTCCCTGCCCCTGATTTCCCTTTCCCCCCtCCCTGGATGGGGATGCCTCTACCTCCACCATTTGgtagtttgcccatcaccctaccctctttggcatgatgtggaatactaagc Alignment from Spaln_nt2Genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGT-CCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG gtaattgacccacttccaatttaccttagctgttctccttgcttctctagCTGTTTCTCAGCCTAGTGGAGCAGCAACCACTCCAGCTTCTAGCACAGGTCCCTCTGCCCCAGCATCCGGATCTGTACCAAGTGCAGAGGCTGGTCCCTGCCCCTGATTTCCCTTTCCCCCCTCCCTGGATGGGGATGCCTCTACCTCCACCATTTGgtagtttgcccatcaccctaccctctttggcatgatgtggaatactaagc Alignment from Pairagon CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGT-CCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG gtaattgacccacttccaatttaccttagctgttctccttgcttctctagCTGTTTCTCAGCCTAGTGGAGCAGCAACCACTCCAGCTTCTAGCACAGGTCCCTCTGCCCCAGCATCCGGATCTGTACCAAGTGCAGAGGCTGGTCCCTGCCCCTGATTTCCCTTTCCCCCCTCCCTGGATGGGGATGCCTCTACCTCCACCATTTGgtagtttgcccatcaccctaccctctttggcatgatgtggaatactaagc Alignment from Exonerate_protein2genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGT-CCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG gtaattgacccacttccaatttaccttagctgttctccttgcttctctagCTGTTTCTCAGCCTAGTGGAGCAGCAACCACTCCAGCTTCTAGCACAGGTCCCTCTGCCCCAGCATCCGGATCTGTACCAAGTGCAGAGGCTGGTCCCTGCCCCTGATTTCCCTTTCCCCCCTCCCTGGATGGGGATGCCTCTACCTCCACCATTTGgtagtttgcccatcaccctaccctctttggcatgatgtggaatactaagc Alignment from Exonerate_coding2genome CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGT-CCTGCCCCCGGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG gtaattgacccacttccaatttaccttagctgttctccttgcttctctagCTGTTTCTCAGCCTAGTGGAGCAGCAACCACTCCAGCTTCTAGCACAGGTCCCTCTGCCCCAGCATCCGGATCTGTACCAAGTGCAGAGGCTGGTCCCTGCCCCTGATTTCCCTTTCCCCCCTCCCTGGATGGGGATGCCTCTACCTCCACCATTTGgtagtttgcccatcaccctaccctctttggcatgatgtggaatactaagc Alignment from GeneWise CCGTTTCTCGGCCTAGTGGAGCAGCCACCACCACAGCTGCTGGCACCAGTACTTCTGCCCCAGCACCTGGGTCTGTACCTGGCCCAGAGGCTGGTCCTGCCCCC-GGCTTCCCTTTCCCTCCTCCTTGGATGGGTATGCCTCTGCCTCCACCTTTTG gtaattgacccacttccaatttaccttagctgttctccttgcttctctagCTGTTTCTCAGCCTAGTGGAGCAGCAACCACTCCAGCTTCTAGCACAGGTCCCTCTGCCCCAGCATCCGGATCTGTACCAAGTGCAGAGGCTGGTCCCTGCCCCTGATTTCCCTTTCCCCCCTCCCTGGATGGGGATGCCTCTACCTCCACCATTTGgtagtttgcccatcaccctaccctctttggcatgatgtggaatactaagc #### Syvn1_ID1394_13 --> 2 - 2 Original Alignment ccTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGA-GCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGgg tggaatactaagcctaggtagctaggcccatgtcatttgttttgtttaagccTTCCCCCCAATGCCAGTACCACCTGCTGGATTTGCTGGTCTAACTCCAGAGGAGTTGTGTCGCACTAGAAGGTCATGAGCGGCAAGACCTGGAGGCCTGTCTGCAGAGTCTGTGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGgggtgagtacgcatattcaattgcacattcctctgtagccagacctcctatt Alignment from CESAR ccTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGA-GCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGgg tggaatactaagcctaggtagctaggcccatgtcatttgttttgtttaagccTTCCCCCCAATGCCAGTACCACCTGCTGGATTTGCTGGTCTAACTCCAGAGGAGTTGTGTCGCACTAGAAGGTCATGAGCGGCAAGACCTGGAGGCCTGTCTGCAGAGTCTGTGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGgggtgagtacgcatattcaattgcacattcctctgtagccagacctcctatt Alignment from Spaln_aa2Genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGA-GCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG tggaatactaagcctaggtagctaggcccatgtcatttgttttgtttaagCCTTCCCCCCAATGCCAGTACCACCTGCTGGATTTGCTGGTCTAACTCCAGAGGAGTTGTGTcGCACTAGAAGGTCATGAGCGGCAAGACCTGGAGGCCTGTCTGCAGAGTCTGTGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGGGgtgagtacgcatattcaattgcacattcctctgtagccagacctcctatt Alignment from Spaln_nt2Genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCGA-GCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG tggaatactaagcctaggtagctaggcccatgtcatttgttttgtttaagCCTTCCCCCCAATGCCAGTACCACCTGCTGGATTTGCTGGTCTAACTCCAGAGGAGTTGTGTCGCACTAGAAGGTCATGAGCGGCAAGACCTGGAGGCCTGTCTGCAGAGTCTGTGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGGGgtgagtacgcatattcaattgcacattcctctgtagccagacctcctatt Alignment from Pairagon CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTGCG-AGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG tggaatactaagcctaggtagctaggcccatgtcatttgttttgtttaagCCTTCCCCCCAATGCCAGTACCACCTGCTGGATTTGCTGGTCTAACTCCAGAGGAGTTGTGTCGCACTAGAAGGTCATGAGCGGCAAGACCTGGAGGCCTGTCTGCAGAGTCTGTGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGGGgtgagtacgcatattcaattgcacattcctctgtagccagacctcctatt Alignment from Exonerate_protein2genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTG-CGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG tggaatactaagcctaggtagctaggcccatgtcatttgttttgtttaagCCTTCCCCCCAATGCCAGTACCACCTGCTGGATTTGCTGGTCTAACTCCAGAGGAGTTGTGTCGCACTAGAAGGTCATGAGCGGCAAGACCTGGAGGCCTGTCTGCAGAGTCTGTGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGGGgtgagtacgcatattcaattgcacattcctctgtagccagacctcctatt Alignment from Exonerate_coding2genome CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTG-CGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG tggaatactaagcctaggtagctaggcccatgtcatttgttttgtttaagCCTTCCCCCCAATGCCAGTACCACCTGCTGGATTTGCTGGTCTAACTCCAGAGGAGTTGTGTCGCACTAGAAGGTCATGAGCGGCAAGACCTGGAGGCCTGTCTGCAGAGTCTGTGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGGGgtgagtacgcatattcaattgcacattcctctgtagccagacctcctatt Alignment from GeneWise CCTTCCCCCCAATGCCTGTGCCCCCTGCGGGCTTTGCTGGCCTAACCCCAGAGGAGCTG-CGAGCACTAGAGGGCCATGAGCGGCAGCACCTGGAGGCCCGGCTGCAGAGTCTGCGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCTTCCCTGGG tggaatactaagcctaggtagctaggcccatgtcatttgttttgtttaagCCTTCCCCCCAATGCCAGTACCACCTGCTGGATTTGCTGGTCTAACTCCAGAGGAGTTGTGTCGCACTAGAAGGTCATGAGCGGCAAGACCTGGAGGCCTGTCTGCAGAGTCTGTGCAACATACACACACTACTGGATGCTGCCATGCTTCAAATCAACCAGTACCTCACTGTGCTGGCCTCCCTGGGgtgagtacgcatattcaattgcacattcctctgtagccagacctcctatt #### Syvn1_ID1395_14 --> 1 - 1 Original Alignment gCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCC-ACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTg gtgcagcaattccaggccgaatgttggataagtgacatgtttacccacaggCCCCCAAGGCCAGCAACCTCTGTGAACCACACTGAAGAAACTGCATCTACTGTCGTATTTGCTGCACCTTCCCAGTAGTGCTCCAAGCTCCGAGGCTCCAACTCCTTCCCCAGGGGCATCCCCCCCGATTCTTGAAGCAGAAAAGCCTCCTggtgaggtagaaaaagaataggcctgcagaatctaggtggtatggcttgta Alignment from CESAR gCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCC-ACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTg gtgcagcaattccaggccgaatgttggataagtgacatgtttacccacaggCCCCCAAGGCCAGCAACCTCTGTGAACCACACTGAAGAAACTGCATCTACTGTCGTATTTGCTGCACCTTCCCAGTAGTGCTCCAAGCTCCGAGGCTCCAACTCCTTCCCCAGGGGCATCCCCCCCGATTCTTGAAGCAGAAAAGCCTCCTggtgaggtagaaaaagaataggcctgcagaatctaggtggtatggcttgta Alignment from Spaln_aa2Genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCC-ACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG gtgcagcaattccaggccgaatgttggataagtgacatgtttacccacagGCCCCCAAGGCCAGCAACCTCTGTGAACCACACTGAAGAAACTGCATCTACTGTCGTATTTGCTGCACCTTCCcAGTAGTGCTCCAAGCTCCGAGGCTCCAACTCCTTCCCCAGGGGCATCCCCCCCGATTCTTGAAGCAGAAAAGCCTCCTGgtgaggtagaaaaagaataggcctgcagaatctaggtggtatggcttgta Alignment from Spaln_nt2Genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCC-ACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG gtgcagcaattccaggccgaatgttggataagtgacatgtttacccacagGCCCCCAAGGCCAGCAACCTCTGTGAACCACACTGAAGAAACTGCATCTACTGTCGTATTTGCTGCACCTTCCCAGTAGTGCTCCAAGCTCCGAGGCTCCAACTCCTTCCCCAGGGGCATCCCCCCCGATTCTTGAAGCAGAAAAGCCTCCTGgtgaggtagaaaaagaataggcctgcagaatctaggtggtatggcttgta Alignment from Pairagon GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTT-CCACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG gtgcagcaattccaggccgaatgttggataagtgacatgtttacccacagGCCCCCAAGGCCAGCAACCTCTGTGAACCACACTGAAGAAACTGCATCTACTGTCGTATTTGCTGCACCTTCCCAGTAGTGCTCCAAGCTCCGAGGCTCCAACTCCTTCCCCAGGGGCATCCCCCCCGATTCTTGAAGCAGAAAAGCCTCCTGgtgaggtagaaaaagaataggcctgcagaatctaggtggtatggcttgta Alignment from Exonerate_protein2genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCC-ACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG gtgcagcaattccaggccgaatgttggataagtgacatgtttacccacagGCCCCCAAGGCCAGCAACCTCTGTGAACCACACTGAAGAAACTGCATCTACTGTCGTATTTGCTGCACCTTCCCAGTAGTGCTCCAAGCTCCGAGGCTCCAACTCCTTCCCCAGGGGCATCCCCCCCGATTCTTGAAGCAGAAAAGCCTCCTGgtgaggtagaaaaagaataggcctgcagaatctaggtggtatggcttgta Alignment from Exonerate_coding2genome GCCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCC-ACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG gtgcagcaattccaggccgaatgttggataagtgacatgtttacccacagGCCCCCAAGGCCAGCAACCTCTGTGAACCACACTGAAGAAACTGCATCTACTGTCGTATTTGCTGCACCTTCCCAGTAGTGCTCCAAGCTCCGAGGCTCCAACTCCTTCCCCAGGGGCATCCCCCCCGATTCTTGAAGCAGAAAAGCCTCCTGgtgaggtagaaaaagaataggcctgcagaatctaggtggtatggcttgta Alignment from GeneWise -CCCCCCAGGCCAGCTACTTCAGTGAACCCCACTGAAGAGACTGCCTCTACAGTGGTATCTGCTGCCCCTTCC-ACCAGCGCCCCCAGCTCTGAGGCTCCTACCCCGTCTCCGGGAGCTTCCCCACCAATTCCTGAAGCAGAAAAGCCTCCTG gtgcagcaattccaggccgaatgttggataagtgacatgtttacccacagGCCCCCAAGGCCAGCAACCTCTGTGAACCACACTGAAGAAACTGCATCTACTGTCGTATTTGCTGCACCTTCCCAGTAGTGCTCCAAGCTCCGAGGCTCCAACTCCTTCCCCAGGGGCATCCCCCCCGATTCTTGAAGCAGAAAAGCCTCCTGgtgaggtagaaaaagaataggcctgcagaatctaggtggtatggcttgta #### Tbc1d10c_ID398_6 --> 0 - 0 Original Alignment GAGGCCTTCTGGTGCTTGGTGCAG-ATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG tccttagtaagactcatatacatgcattaatgtagccctctctatttcagGAGGCCTTCTGGTGCTTAGTGCAGCATCTGTGAGGTTTACCTCCCAGGCTACTATGGGCCCCACATGgtaaaggcttgggttgaggcttaaaaaggggcactgagccattggaggcc Alignment from CESAR GAGGCCTTCTGGTGCTTGGTGCAG-ATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG tccttagtaagactcatatacatgcattaatgtagccctctctatttcagGAGGCCTTCTGGTGCTTAGTGCAGCATCTGTGAGGTTTACCTCCCAGGCTACTATGGGCCCCACATGgtaaaggcttgggttgaggcttaaaaaggggcactgagccattggaggcc Alignment from Spaln_aa2Genome GAGGCCTTCTGGTGCTTGGTGCAG-ATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG tccttagtaagactcatatacatgcattaatgtagccctctctatttcagGAGGCCTTCTGGTGCTTAGTGCAGcATCTGTGAGGTTTACCTCCCAGGCTACTATGGGCCCCACATGgtaaaggcttgggttgaggcttaaaaaggggcactgagccattggaggcc Alignment from Spaln_nt2Genome GAGGCCTTCTGGTGCTTGGTGCAG-ATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG tccttagtaagactcatatacatgcattaatgtagccctctctatttcagGAGGCCTTCTGGTGCTTAGTGCAGCATCTGTGAGGTTTACCTCCCAGGCTACTATGGGCCCCACATGgtaaaggcttgggttgaggcttaaaaaggggcactgagccattggaggcc Alignment from Pairagon GAGGCCTTCTGGTGCTTGGTGCAG-ATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG tccttagtaagactcatatacatgcattaatgtagccctctctatttcagGAGGCCTTCTGGTGCTTAGTGCAGCATCTGTGAGGTTTACCTCCCAGGCTACTATGGGCCCCACATGgtaaaggcttgggttgaggcttaaaaaggggcactgagccattggaggcc Alignment from Exonerate_protein2genome GAGGCCTTCTGGTGCTTGGTGCAG-ATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG tccttagtaagactcatatacatgcattaatgtagccctctctatttcagGAGGCCTTCTGGTGCTTAGTGCAGCATCTGTGAGGTTTACCTCCCAGGCTACTATGGGCCCCACATGgtaaaggcttgggttgaggcttaaaaaggggcactgagccattggaggcc Alignment from Exonerate_coding2genome GAGGCCTTCTGGTGCTTGGTGCAG-ATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG tccttagtaagactcatatacatgcattaatgtagccctctctatttcagGAGGCCTTCTGGTGCTTAGTGCAGCATCTGTGAGGTTTACCTCCCAGGCTACTATGGGCCCCACATGgtaaaggcttgggttgaggcttaaaaaggggcactgagccattggaggcc Alignment from GeneWise GAGGCCTTCTGGTGCTTGGTGCAG-ATCTGCGAGGTCTACCTCCCTGGCTACTATGGGCCCCACATG tccttagtaagactcatatacatgcattaatgtagccctctctatttcagGAGGCCTTCTGGTGCTTAGTGCAGCATCTGTGAGGTTTACCTCCCAGGCTACTATGGGCCCCACATGgtaaaggcttgggttgaggcttaaaaaggggcactgagccattggaggcc #### Tcirg1_ID169_18 --> 2 - 2 Original Alignment agCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCT-GTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACtg gtgagggtagttacaggcattcccatgttgtttgtttgtttaaatgccagagCTGTCTGAAGTCCTTTGGGCAATGGTGATGCACATAGGCCTTGGCATGGGCCGAGAGATTGGGGTCGCGGCTCGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTCGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATtggtatgaatctatttagtgggatttggcagggaccatgggttgattgactc Alignment from CESAR agCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCT-GTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACtg gtgagggtagttacaggcattcccatgttgtttgtttgtttaaatgccagagCTGTCTGAAGTCCTTTGGGCAATGGTGATGCACATAGGCCTTGGCATGGGCCGAGAGATTGGGGTCGCGGCTCGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTCGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATtggtatgaatctatttagtgggatttggcagggaccatgggttgatttcttc Alignment from Spaln_aa2Genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCT-GTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG gtgagggtagttacaggcattcccatgttgtttgtttgtttaaatgccagAGCTGTCTGAAGTCCTTTGGGCAATGGTGATGCACATAGGCCTTGGCATGGGCCGAGAGATTGGGGTCGCGGCTcGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTCGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATTGgtatgaatctatttagtgggatttggcagggaccatgggttgattgactc Alignment from Spaln_nt2Genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCT-GTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG gtgagggtagttacaggcattcccatgttgtttgtttgtttaaatgccagAGCTGTCTGAAGTCCTTTGGGCAATGGTGATGCACATAGGCCTTGGCATGGGCCGAGAGATTGGGGTCGCGGCTCGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTCGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATTGgtatgaatctatttagtgggatttggcagggaccatgggttgattgactc Alignment from Pairagon AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCT-GTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG gtgagggtagttacaggcattcccatgttgtttgtttgtttaaatgccagAGCTGTCTGAAGTCCTTTGGGCAATGGTGATGCACATAGGCCTTGGCATGGGCCGAGAGATTGGGGTCGCGGCTCGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTCGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATTGgtatgaatctatttagtgggatttggcagggaccatgggttgattgactc Alignment from Exonerate_protein2genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCT-GTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTG gtgagggtagttacaggcattcccatgttgtttgtttgtttaaatgccagAGCTGTCTGAAGTCCTTTGGGCAATGGTGATGCACATAGGCCTTGGCATGGGCCGAGAGATTGGGGTCGCGGCTCGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTCGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATTGgtatgaatctatttagtgggatttggcagggaccatgggttgattgactc Alignment from Exonerate_coding2genome AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCAGCT-GTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTGGGTGGAG gtgagggtagttacaggcattcccatgttgtttgtttgtttaaatgccagAGCTGTCTGAAGTCCTTTGGGCAATGGTGATGCACATAGGCCTTGGCATGGGCCGAGAGATTGGGGTCGCGGCTCGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTCGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATTGGTATGAAtctatttagtgggatttggcagggaccatgggttgattgactc Alignment from GeneWise AGCTGTCTGAGGTCCTGTGGGCCATGGTGATGCGCATAGGCCTGGGCATGGGCCGAGAGATCGGCGTGGCA-GCTGTGGTGCTGGTCCCTGTGTTTGCTGCCTTTGCTGTGTTGACTGTGGCCATCCTGTTAGTGATGGAGGGGCTCTCAGCCTTCCTGCATGCCCTGCGGTTGCACTGGGTGGAG gtgagggtagttacaggcattcccatgttgtttgtttgtttaaatgccagAGCTGTCTGAAGTCCTTTGGGCAATGGTGATGCACATAGGCCTTGGCATGGGCCGAGAGATTGGGGTCGCGGCTCGTAGTATTGGTCCCTGTGTTTGCTGCCTTTGCTGTATTAACTGTCGCAATTCTGTTAGTAATGGAGGGTCTTTTAGCCTTCTTACATGCTCTGCGGTTACATTGGTATGAAtctatttagtgggatttggcagggaccatgggttgattgactc #### Tcirg1_ID170_17 --> 0 - 1 Original Alignment TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGC-CTGGCCCATGCCc gtggatggatgttcaacttgttagcttcttttcatgtttttatatttcagTTTGTCCCATCTGAGATTTTCATGCACCGAGCAATCCACACCATTGAGTTCTGTCTTGGTTGCATCTCAAACACAGCCTCTTACCTGCGTCTTTGGGCTTTGAGCCCTGGCCCATGCAcgtaagggatgtttattgtgtgatgatattataaaatcctaatgggtacca Alignment from CESAR TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGC-CTGGCCCATGCCc gtggatggatgttcaacttgttagcttcttttcatgtttttatatttcagTTTGTCCCATCTGAGATTTTCATGCACCGAGCAATCCACACCATTGAGTTCTGTCTTGGTTGCATCTCAAACACAGCCTCTTACCTGCGTCTTTGGGCTTTGAGCCCTGGCCCATGCAcgtaagggatgtttattgtgtgatgatattataaaatcctaatgggtacca Alignment from Spaln_aa2Genome TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCCTGG gtggatggatgttcaacttgttagcttcttttcatgtttttatatttcagTTTGTCCCATCTGAGATTTTCATGCACCGAGCAATCCACACCATTGAGTTCTGTCTTGGTTGCATCTCAAACACAGCCTCTTACCTGCGTCTTTGGGCTTTGAGCCCTGgcccatgcacgtaagggatgtttattgtgtgatgatattataaaatcctaatgggtacca Alignment from Spaln_nt2Genome TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGCC-TGGCCCATGCCC gtggatggatgttcaacttgttagcttcttttcatgtttttatatttcagTTTGTCCCATCTGAGATTTTCATGCACCGAGCAATCCACACCATTGAGTTCTGTCTTGGTTGCATCTCAAACACAGCCTCTTACCTGCGTCTTTGGGCTTTGAGCCCTGGCCCATGCACgtaagggatgtttattgtgtgatgatattataaaatcctaatgggtacca Alignment from Pairagon TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAG-CCTGGCCCATGCCC gtggatggatgttcaacttgttagcttcttttcatgtttttatatttcagTTTGTCCCATCTGAGATTTTCATGCACCGAGCAATCCACACCATTGAGTTCTGTCTTGGTTGCATCTCAAACACAGCCTCTTACCTGCGTCTTTGGGCTTTGAGCCCTGGCCCATGCACgtaagggatgtttattgtgtgatgatattataaaatcctaatgggtacca Alignment from Exonerate_protein2genome TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGC-CTGGCCCATGCCC gtggatggatgttcaacttgttagcttcttttcatgtttttatatttcagTTTGTCCCATCTGAGATTTTCATGCACCGAGCAATCCACACCATTGAGTTCTGTCTTGGTTGCATCTCAAACACAGCCTCTTACCTGCGTCTTTGGGCTTTGAGCCCTGGCCCATGCACgtaagggatgtttattgtgtgatgatattataaaatcctaatgggtacca Alignment from Exonerate_coding2genome TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTGAGC-CTGGCCCATGCCC gtggatggatgttcaacttgttagcttcttttcatgtttttatatttcagTTTGTCCCATCTGAGATTTTCATGCACCGAGCAATCCACACCATTGAGTTCTGTCTTGGTTGCATCTCAAACACAGCCTCTTACCTGCGTCTTTGGGCTTTGAGCCCTGGCCCATGCACgtaagggatgtttattgtgtgatgatattataaaatcctaatgggtacca Alignment from GeneWise TTTGTCCCTTCTGAGATCTTCATGCACCAAGCAATCCACACCATTGAGTTCTGCCTGGGCTGCATCTCCAACACAGCCTCCTACTTGCGTCTCTGGGCCCTG-AGCCTGGCCCATGCCC gtggatggatgttcaacttgttagcttcttttcatgtttttatatttcagTTTGTCCCATCTGAGATTTTCATGCACCGAGCAATCCACACCATTGAGTTCTGTCTTGGTTGCATCTCAAACACAGCCTCTTACCTGCGTCTTTGGGCTTTGAGCCCTGGCCCATGCACgtaagggatgtttattgtgtgatgatattataaaatcctaatgggtacca #### Tcirg1_ID171_16 --> 0 - 0 Original Alignment GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAG-AACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagataatttcaggagactgctgcatttgtcccacccaataagGATGAGGACACGGATAAGCTACTTGCTTCCCCTGATGCAACAACCTTGGAGCAACAGTTGGAGCCCTGATGAGGAGGTAGCTGGGAGCCCCGGGGAAGAAGAGACTGATgtaaggggacctatagttgctaaaaatggcctgccaggccagattagttg Alignment from CESAR GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAG-AACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagataatttcaggagactgctgcatttgtcccacccaataagGATGAGGACACGGATAAGCTACTTGCTTCCCCTGATGCAACAACCTTGGAGCAACAGTTGGAGCCCTGATGAGGAGGTAGCTGGGAGCCCCGGGGAAGAAGAGACTGATgtaaggggacctatagttgctaaaaatggcctgccaggccagattagttg Alignment from Spaln_aa2Genome GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAG-AACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagataatttcaggagactgctgcatttgtcccacccaataagGATGAGGACACGGATAAGCTACTTGCTTCCCCTGATGCAACAACCTTGGAGcAACAGTTGGAGCCCTGATGAGGAGGTAGCTGGGAGCCCCGGGGAAGAAGAGACTGATgtaaggggacctatagttgctaaaaatggcctgccaggccagattagttg Alignment from Spaln_nt2Genome GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAGA-ACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagataatttcaggagactgctgcatttgtcccacccaataagGATGAGGACACGGATAAGCTACTTGCTTCCCCTGATGCAACAACCTTGGAGCAACAGTTGGAGCCCTGATGAGGAGGTAGCTGGGAGCCCCGGGGAAGAAGAGACTGATgtaaggggacctatagttgctaaaaatggcctgccaggccagattagttg Alignment from Pairagon GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAG-AACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagataatttcaggagactgctgcatttgtcccacccaataagGATGAGGACACGGATAAGCTACTTGCTTCCCCTGATGCAACAACCTTGGAGCAACAGTTGGAGCCCTGATGAGGAGGTAGCTGGGAGCCCCGGGGAAGAAGAGACTGATgtaaggggacctatagttgctaaaaatggcctgccaggccagattagttg Alignment from Exonerate_protein2genome GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAG-AACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagataatttcaggagactgctgcatttgtcccacccaataagGATGAGGACACGGATAAGCTACTTGCTTCCCCTGATGCAACAACCTTGGAGCAACAGTTGGAGCCCTGATGAGGAGGTAGCTGGGAGCCCCGGGGAAGAAGAGACTGATgtaaggggacctatagttgctaaaaatggcctgccaggccagattagttg Alignment from Exonerate_coding2genome GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTGGAG-AACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagataatttcaggagactgctgcatttgtcccacccaataagGATGAGGACACGGATAAGCTACTTGCTTCCCCTGATGCAACAACCTTGGAGCAACAGTTGGAGCCCTGATGAGGAGGTAGCTGGGAGCCCCGGGGAAGAAGAGACTGATgtaaggggacctatagttgctaaaaatggcctgccaggccagattagttg Alignment from GeneWise GATGAGGACACGGACAAGCTTCTGGCCTCCCCTGATGCATCCACCTTG-GAGAACAGCTGGAGCCCTGATGAGGAGAAGGCTGGGAGCCCAGGGGATGAAGAAACTGAG gatagcacagataatttcaggagactgctgcatttgtcccacccaataagGATGAGGACACGGATAAGCTACTTGCTTCCCCTGATGCAACAACCTTGGAGCAACAGTTGGAGCCCTGATGAGGAGGTAGCTGGGAGCCCCGGGGAAGAAGAGACTGATgtaaggggacctatagttgctaaaaatggcctgccaggccagattagttg #### Tcirg1_ID179_8 --> 0 - 0 Original Alignment AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAG-GCGCTGCAGAGCGGCTCA AAGAGgtaagatcctaagggatctgaagtccctcctcttcatcctcacagGTCTTGGGGGAGACAGACCGATTCTTAAGCCAAGTGCTAGGGCGAGTGCAGCAGTTACTGCCCCCATGGCAGGTGCAGATCCATAAGATGAAGGCTGTCTACCTAACCCTCAATTCTTGCAGTGTTAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTCTGCTGCAAGAGACCTACCCACAGTGCAACAGCGCCCTACAAAGTGGCTCAgtaagggtccagggtcttattgaagtacccattaagcaagagaggtgcca Alignment from CESAR AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAG-GCGCTGCAGAGCGGCTCA AAGAGgtgtggtcctaagggatctgaagtccctcctcttcatcctcacagGTCTTGGGGGAGACAGACCGATTCTTAAGCCAAGTGCTAGGGCGAGTGCAGCAGTTACTGCCCCCATGGCAGGTGCAGATCCATAAGATGAAGGCTGTCTACCTAACCCTCAATTCTTGCAGTGTTAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTCTGCTGCAAGAGACCTACCCACAGTGCAACAGCGCCCTACAAAGTGGCTCAgtaagggtccagggtcttattgaagtacccattaagcaagagaggtgcca Alignment from Spaln_aa2Genome AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAG-GCGCTGCAGAGCGGCTCA AAGAGgtaagatcctaagggatctgaagtccctcctcttcatcctcacagGTCTTGGGGGAGACAGACCGATTCTTAAGCCAAGTGCTAGGGCGAGTGCAGCAGTTACTGCCCCCATGGCAGGTGCAGATCCATAAGATGAAGGCTGTCTACCTAACCCTCAATTCTTGCAGTGTTAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTCTGCTGCAAGAGACCTACCCACAGTGCAACAGcGCCCTACAAAGTGGCTCAgtaagggtccagggtcttattgaagtacccattaagcaagagaggtgcca Alignment from Spaln_nt2Genome AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAG-GCGCTGCAGAGCGGCTCA AAGAGgtaagatcctaagggatctgaagtccctcctcttcatcctcacagGTCTTGGGGGAGACAGACCGATTCTTAAGCCAAGTGCTAGGGCGAGTGCAGCAGTTACTGCCCCCATGGCAGGTGCAGATCCATAAGATGAAGGCTGTCTACCTAACCCTCAATTCTTGCAGTGTTAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTCTGCTGCAAGAGACCTACCCACAGTGCAACAGCGCCCTACAAAGTGGCTCAgtaagggtccagggtcttattgaagtacccattaagcaagagaggtgcca Alignment from Pairagon AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAG-GCGCTGCAGAGCGGCTCA AAGAGgtaagatcctaagggatctgaagtccctcctcttcatcctcacagGTCTTGGGGGAGACAGACCGATTCTTAAGCCAAGTGCTAGGGCGAGTGCAGCAGTTACTGCCCCCATGGCAGGTGCAGATCCATAAGATGAAGGCTGTCTACCTAACCCTCAATTCTTGCAGTGTTAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTCTGCTGCAAGAGACCTACCCACAGTGCAACAGCGCCCTACAAAGTGGCTCAgtaagggtccagggtcttattgaagtacccattaagcaagagaggtgcca Alignment from Exonerate_protein2genome AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAG-GCGCTGCAGAGCGGCTCA AAGAGgtaagatcctaagggatctgaagtccctcctcttcatcctcacagGTCTTGGGGGAGACAGACCGATTCTTAAGCCAAGTGCTAGGGCGAGTGCAGCAGTTACTGCCCCCATGGCAGGTGCAGATCCATAAGATGAAGGCTGTCTACCTAACCCTCAATTCTTGCAGTGTTAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTCTGCTGCAAGAGACCTACCCACAGTGCAACAGCGCCCTACAAAGTGGCTCAgtaagggtccagggtcttattgaagtacccattaagcaagagaggtgcca Alignment from Exonerate_coding2genome AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAG-GCGCTGCAGAGCGGCTCA AAGAGgtaagatcctaagggatctgaagtccctcctcttcatcctcacagGTCTTGGGGGAGACAGACCGATTCTTAAGCCAAGTGCTAGGGCGAGTGCAGCAGTTACTGCCCCCATGGCAGGTGCAGATCCATAAGATGAAGGCTGTCTACCTAACCCTCAATTCTTGCAGTGTTAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTCTGCTGCAAGAGACCTACCCACAGTGCAACAGCGCCCTACAAAGTGGCTCAgtaagggtccagggtcttattgaagtacccattaagcaagagaggtgcca Alignment from GeneWise AGGAA GTCCTGGGGGAGACAGACCGGTTCCTGAGCCAGGTGTTGGGCCGGGTGCAGCAGCTGCTGCCCCCATGGCAGGTGCAGATCCACAAGATGAAGGCAGTGTACCTGACCCTCAACCAGTGCAGTGTGAACACCACACACAAGTGCCTCATCGCGGAGGTCTGGTGTGCCGCGAGGGACCTGCCCACTGTGCAGCAGGCG------------CTGCAGAGCGGCTCAAG AAGAGgtaagatcctaagggatctgaagtccctcctcttcatcctcacagGTCTTGGGGGAGACAGACCGATTCTTAAGCCAAGTGCTAGGGCGAGTGCAGCAGTTACTGCCCCCATGGCAGGTGCAGATCCATAAGATGAAGGCTGTCTACCTAACCCTCAATTCTTGCAGTGTTAACACCACACACAAGTGCCTCATTGCAGAGGTGTGGTCTGCTGCAAGAGACCTACCCACAGTGCAACAGCGCCCTACAAAGTGGCTCAGTAAGGGTCCAGGgtcttattgaagtacccattaagcaagagaggtgcca #### Tcirg1_ID182_5 --> 1 - 0 Original Alignment tTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAG-CGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCC agggaaggagagttgagaggagtctgcatggaatggcgtttgtgttctagcTTTGTGGCAGGTGCAGTGGAGCCCTACAAGGCAGCGGCCTTAGAGCCGCCTGTTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGAAGGACCCAGTGGCAgtgagtgtaaaggcaggactacacactctccttttactgcagGGTGAGCC Alignment from CESAR tTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAG-CGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCC agggaaggagagttgagaggagtctgcatggaatggcgtttgtgttctagcTTTGTGGCAGGTGCAGTGGAGCCCTACAAGGCAGCGGCCTTAGAGCCGCCTGTTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGAAGGACCCAGTGGCAgtgagtgtaaaggcaggacttcatgtctctttgtcactgtagGGTGAGCC Alignment from Spaln_aa2Genome TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAG-CGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCC agggaaggagagttgagaggagtctgcatggaatggcgtttgtgttctagCTTTGTGGCAGGTGCAGTGGAGCCCTACAAGGCAGCGGCCTTAGAGcCGCCTGTTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGAAGGACCCAGTGGCAgtgagtgtaaaggcaggactacacactctccttttactgcagGGTGAGCC Alignment from Spaln_nt2Genome TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAGC-GCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCC agggaaggagagttgagaggagtctgcatggaatggcgtttgtgttctagCTTTGTGGCAGGTGCAGTGGAGCCCTACAAGGCAGCGGCCTTAGAGCCGCCTGTTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGAAGGACCCAGTGGCAgtgagtgtaaaggcaggactacacactctccttttactgcagGGTGAGCC Alignment from Pairagon TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAG-CGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCC agggaaggagagttgagaggagtctgcatggaatggcgtttgtgttctagCTTTGTGGCAGGTGCAGTGGAGCCCTACAAGGCAGCGGCCTTAGAGCCGCCTGTTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGAAGGACCCAGTGGCAgtgagtgtaaaggcaggactacacactctccttttactgcagGGTGAGCC Alignment from Exonerate_protein2genome TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAG-CGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCC agggaaggagagttgagaggagtctgcatggaatggcgtttgtgttctagCTTTGTGGCAGGTGCAGTGGAGCCCTACAAGGCAGCGGCCTTAGAGCCGCCTGTTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGAAGGACCCAGTGGCAgtgagtgtaaaggcaggactacacactctccttttactgcagGGTGAGCC Alignment from Exonerate_coding2genome TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTGGAG-CGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG GGTGAGCC agggaaggagagttgagaggagtctgcatggaatggcgtttgtgttctagCTTTGTGGCAGGTGCAGTGGAGCCCTACAAGGCAGCGGCCTTAGAGCCGCCTGTTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGAAGGACCCAGTGGCAgtgagtgtaaaggcaggactacacactctccttttactgcagGGTGAGCC Alignment from GeneWise TTTTGTGGCAGGTGCTGTGGAGCCCTACAAGGCTGCGGCCCTG-GAGCGCCTGCTGTGGAGAGCTTGCCGCGGCTTCCTCATTGCCAGCTTTCGGGAGACTGAGGGGCAGCTGGAGGACCCAGTGACG------------------------------------------GGTGAGCC agggaaggagagttgagaggagtctgcatggaatggcgtttgtgttctagCTTTGTGGCAGGTGCAGTGGAGCCCTACAAGGCAGCGGCCTTAGAGCCGCCTGTTGTGGAGAGCTTGCCGTGGCTTTCTCATTGCTAGCTTTCGTGAGACTGAAGGGCAACTGAAGGACCCAGTGGCAGTGAGTGTAAAGGCAGGACTACACACTCTCCTTTTACTGCAGGGTGAGCC #### Tctn3_ID7990_11 --> 0 - 2 Original Alignment ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCT-AAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAag aacaaccacaccgatctctgactcaccattcttgtcactgttgttcacagATGACCCTGTTGCAGAGTGAGGCTAATGGAGTTTGCTCTGCTCAAGAGACATGCAGTGCAGTTTGGTGTTAATGCATTCTCTGGGTGCCAATTAaggtaggtaatttgtgtgagatgactctgagatgagaccttgtaaatcagat Alignment from CESAR ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCT-AAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAag aacaaccacaccgatctctgactcaccattcttgtcactgttgttcacagATGACCCTGTTGCAGAGTGAGGCTAATGGAGTTTGCTCTGCTCAAGAGACATGCAGTGCAGTTTGGTGTTAATGCATTCTCTGGGTGCCAATTAaggtaggtaatttgtgtgagatgactctgagatgagaccttgtaaatcagat Alignment from Spaln_aa2Genome ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCT-AAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG aacaaccacaccgatctctgactcaccattcttgtcactgttgttcacagATGACCCTGTTGCAGAGTGAGGCTAATGGAGTTTGCTCTGCTcAAGAGACATGCAGTGCAGTTTGGTGTTAATGCATTCTCTGGGTGCCAATTAAGgtaggtaatttgtgtgagatgactctgagatgagaccttgtaaatcagat Alignment from Spaln_nt2Genome ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCT-AAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG aacaaccacaccgatctctgactcaccattcttgtcactgttgttcacagATGACCCTGTTGCAGAGTGAGGCTAATGGAGTTTGCTCTGCTCAAGAGACATGCAGTGCAGTTTGGTGTTAATGCATTCTCTGGGTGCCAATTAAGgtaggtaatttgtgtgagatgactctgagatgagaccttgtaaatcagat Alignment from Pairagon ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCT-AAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG aacaaccacaccgatctctgactcaccattcttgtcactgttgttcacagATGACCCTGTTGCAGAGTGAGGCTAATGGAGTTTGCTCTGCTCAAGAGACATGCAGTGCAGTTTGGTGTTAATGCATTCTCTGGGTGCCAATTAAGgtaggtaatttgtgtgagatgactctgagatgagaccttgtaaatcagat Alignment from Exonerate_protein2genome ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCT-AAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG aacaaccacaccgatctctgactcaccattcttgtcactgttgttcacagATGACCCTGTTGCAGAGTGAGGCTAATGGAGTTTGCTCTGCTCAAGAGACATGCAGTGCAGTTTGGTGTTAATGCATTCTCTGGGTGCCAATTAAGgtaggtaatttgtgtgagatgactctgagatgagaccttgtaaatcagat Alignment from Exonerate_coding2genome ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCTGCT-AAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG aacaaccacaccgatctctgactcaccattcttgtcactgttgttcacagATGACCCTGTTGCAGAGTGAGGCTAATGGAGTTTGCTCTGCTCAAGAGACATGCAGTGCAGTTTGGTGTTAATGCATTCTCTGGGTGCCAATTAAGgtaggtaatttgtgtgagatgactctgagatgagaccttgtaaatcagat Alignment from GeneWise ATGACCCTGTTGCAGAGCGAGGGTAATGGGCTTTGCTCT-GCTAAGAGACACGCAGTACAGTTTGGAGTGAACGCAGTATCTGGGTGCCAGTTAAG aacaaccacaccgatctctgactcaccattcttgtcactgttgttcacagATGACCCTGTTGCAGAGTGAGGCTAATGGAGTTTGCTCTGCTCAAGAGACATGCAGTGCAGTTTGGTGTTAATGCATTCTCTGGGTGCCAATTAAGgtaggtaatttgtgtgagatgactctgagatgagaccttgtaaatcagat #### Tctn3_ID7995_6 --> 2 - 0 Original Alignment gtTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCC-TCTTACTATAACTTCAGAGTCTTGAAG ttagtgatgttttctcagttactggggcttctctcttgtttgtgctttaggaTTTCTAGAGACTAAAAGTATGACCTCTTCCCGTTTCTTTAAGGACCTATCCAGTAGCTGCACCTCTGAGCCAGCTCTGGATGCAGTTCTCAGATTACAACTTCAGAGTCTTGAAGgtttgtcacagccagctttctgacttcttctgatttctccctgatgctgg Alignment from CESAR gtTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCC-TCTTACTATAACTTCAGAGTCTTGAAG ttagtgatgttttctcagttactggggcttctctcttgtttgtgctttaggaTTTCTAGAGACTAAAAGTATGACCTCTTCCCGTTTCTTTAAGGACCTATCCAGTAGCTGCACCTCTGAGCCAGCTCTGGATGCAGTTCTCAGATTACAACTTCAGAGTCTTGAAGgtttgtcacagccagctttctgacttcttctgatttctccctgatgctgg Alignment from Spaln_aa2Genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCC-TCTTACTATAACTTCAGAGTCTTGAAG ttagtgatgttttctcagttactggggcttctctcttgtttgtgctttagGATTTCTAGAGACTAAAAGTATGACCTCTTCCCGTTTCTTTAAGGACCTATCCAGTAGCTGCACCTCTGAGCCAGCTCTGGATGCAGTTcTCAGATTACAACTTCAGAGTCTTGAAGgtttgtcacagccagctttctgacttcttctgatttctccctgatgctgg Alignment from Spaln_nt2Genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGC-CTCTTACTATAACTTCAGAGTCTTGAAG ttagtgatgttttctcagttactggggcttctctcttgtttgtgctttagGATTTCTAGAGACTAAAAGTATGACCTCTTCCCGTTTCTTTAAGGACCTATCCAGTAGCTGCACCTCTGAGCCAGCTCTGGATGCAGTTCTCAGATTACAACTTCAGAGTCTTGAAGgtttgtcacagccagctttctgacttcttctgatttctccctgatgctgg Alignment from Pairagon GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTG-CCTCTTACTATAACTTCAGAGTCTTGAAG ttagtgatgttttctcagttactggggcttctctcttgtttgtgctttagGATTTCTAGAGACTAAAAGTATGACCTCTTCCCGTTTCTTTAAGGACCTATCCAGTAGCTGCACCTCTGAGCCAGCTCTGGATGCAGTTCTCAGATTACAACTTCAGAGTCTTGAAGgtttgtcacagccagctttctgacttcttctgatttctccctgatgctgg Alignment from Exonerate_protein2genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCC-TCTTACTATAACTTCAGAGTCTTGAAG ttagtgatgttttctcagttactggggcttctctcttgtttgtgctttagGATTTCTAGAGACTAAAAGTATGACCTCTTCCCGTTTCTTTAAGGACCTATCCAGTAGCTGCACCTCTGAGCCAGCTCTGGATGCAGTTCTCAGATTACAACTTCAGAGTCTTGAAGgtttgtcacagccagctttctgacttcttctgatttctccctgatgctgg Alignment from Exonerate_coding2genome GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCTGCC-TCTTACTATAACTTCAGAGTCTTGAAG ttagtgatgttttctcagttactggggcttctctcttgtttgtgctttagGATTTCTAGAGACTAAAAGTATGACCTCTTCCCGTTTCTTTAAGGACCTATCCAGTAGCTGCACCTCTGAGCCAGCTCTGGATGCAGTTCTCAGATTACAACTTCAGAGTCTTGAAGgtttgtcacagccagctttctgacttcttctgatttctccctgatgctgg Alignment from GeneWise GTTTCCTAGAGAGTAAAAGCACAACGTGTCCTCGTTTCTTCAGGGACCTGGCCAGTAGCTGCACCTCGGAGCCAGCCCTGGATGCT-GCCTCTTACTATAACTTCAGAGTCTTGAAG ttagtgatgttttctcagttactggggcttctctcttgtttgtgctttagGATTTCTAGAGACTAAAAGTATGACCTCTTCCCGTTTCTTTAAGGACCTATCCAGTAGCTGCACCTCTGAGCCAGCTCTGGATGCAGTTCTCAGATTACAACTTCAGAGTCTTGAAGgtttgtcacagccagctttctgacttcttctgatttctccctgatgctgg #### Tctn3_ID7996_5 --> 0 - 1 Original Alignment GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGG-CAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAg actgcttaaagctactattctttctgttcaactcttttgctgccacttagGCTGGGGATCCCATCCTGACCTACTACCCAAGCTGGTCCGTGGTGAGCTTACTGAGGCCAACCTGCAGCTGTAGGAGCTGGCGGACTTTGTGCAGAGAGCAACCCAGCAggtgagaccagtgtatgtgtgtgccggcccttgtaccctttagtgatgttt Alignment from CESAR GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGG-CAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAg actgcttaaagctactattctttctgttcaactcttttgctgccacttagGCTGGGGATCCCATCCTGACCTACTACCCAAGCTGGTCCGTGGTGAGCTTACTGAGGCCAACCTGCAGCTGTAGGAGCTGGCGGACTTTGTGCAGAGAGCAACCCAGCAggtgagaccagtgtatgtgtgtgccggcccttgtaccctttagtgatgttt Alignment from Spaln_aa2Genome GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGG-CAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG actgcttaaagctactattctttctgttcaactcttttgctgccacttagGCTGGGGATCCCATCCTGACCTACTACCCAAGCTGGTCCGTGGTGAGCTTACTGAGGcCAACCTGCAGCTGTAGGAGCTGGCGGACTTTGTGCAGAGAGCAACCCAGCAGgtgagaccagtgtatgtgtgtgccggcccttgtaccctttagtgatgttt Alignment from Spaln_nt2Genome GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGGC-AGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG actgcttaaagctactattctttctgttcaactcttttgctgccacttagGCTGGGGATCCCATCCTGACCTACTACCCAAGCTGGTCCGTGGTGAGCTTACTGAGGCCAACCTGCAGCTGTAGGAGCTGGCGGACTTTGTGCAGAGAGCAACCCAGCAGgtgagaccagtgtatgtgtgtgccggcccttgtaccctttagtgatgttt Alignment from Pairagon GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGG-CAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG actgcttaaagctactattctttctgttcaactcttttgctgccacttagGCTGGGGATCCCATCCTGACCTACTACCCAAGCTGGTCCGTGGTGAGCTTACTGAGGCCAACCTGCAGCTGTAGGAGCTGGCGGACTTTGTGCAGAGAGCAACCCAGCAGgtgagaccagtgtatgtgtgtgccggcccttgtaccctttagtgatgttt Alignment from Exonerate_protein2genome GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGG-CAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG actgcttaaagctactattctttctgttcaactcttttgctgccacttagGCTGGGGATCCCATCCTGACCTACTACCCAAGCTGGTCCGTGGTGAGCTTACTGAGGCCAACCTGCAGCTGTAGGAGCTGGCGGACTTTGTGCAGAGAGCAACCCAGCAGgtgagaccagtgtatgtgtgtgccggcccttgtaccctttagtgatgttt Alignment from Exonerate_coding2genome GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGG-CAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG actgcttaaagctactattctttctgttcaactcttttgctgccacttagGCTGGGGATCCCATCCTGACCTACTACCCAAGCTGGTCCGTGGTGAGCTTACTGAGGCCAACCTGCAGCTGTAGGAGCTGGCGGACTTTGTGCAGAGAGCAACCCAGCAGgtgagaccagtgtatgtgtgtgccggcccttgtaccctttagtgatgttt Alignment from GeneWise GCTGGGGATCCCATCCTGACCTACTACCCGAGCTGGTCTGTGGTGAGCTTACTGAGG-CAGCCTGCAGCGGTGGGAGCTGGGGGACTTTGTGCCGAGAGCAACCCTGCAG actgcttaaagctactattctttctgttcaactcttttgctgccacttagGCTGGGGATCCCATCCTGACCTACTACCCAAGCTGGTCCGTGGTGAGCTTACTGAGGCCAACCTGCAGCTGTAGGAGCTGGCGGACTTTGTGCAGAGAGCAACCCAGCAGgtgagaccagtgtatgtgtgtgccggcccttgtaccctttagtgatgttt #### Tdrd1_ID12222_23 --> 2 - 0 Original Alignment agATACCACACAGCAGAGACTGC-TGTTGCACAGAGTTACAGAAACAG tgtgactgtaggatccgtctaagtccataattcttttcttggcttttcagagATACCTCACAGTAGGGACTGCCTGTTGCACAGAATTACAGAAACAGgtagggatttactgctgctcaaaccagctgcttcccattgacatagaaat Alignment from CESAR agATACCACACAGCAGAGACTGC-TGTTGCACAGAGTTACAGAAACAG tgtgactgtaggatccgtctaagtccataattcttttcttggcttttcagagATACCTCACAGTAGGGACTGCCTGTTGCACAGAATTACAGAAACAGgtagggatttactgctgctcaaaccagctgcttcccattgacatagaaat Alignment from Spaln_aa2Genome AGATACCACACAGCAGAGACTGC-TGTTGCACAGAGTTACAGAAACAG tgtgactgtaggatccgtctaagtccataattcttttcttggcttttcagAGATACCTCACAGTAGGGACTGCcTGTTGCACAGAATTACAGAAACAGgtagggatttactgctgctcaaaccagctgcttcccattgacatagaaat Alignment from Spaln_nt2Genome AGATACCACACAGCAGAGACTGC-TGTTGCACAGAGTTACAGAAACAG tgtgactgtaggatccgtctaagtccataattcttttcttggcttttcagAGATACCTCACAGTAGGGACTGCCTGTTGCACAGAATTACAGAAACAGgtagggatttactgctgctcaaaccagctgcttcccattgacatagaaat Alignment from Pairagon AGATACCACACAGCAGAGACTG-CTGTTGCACAGAGTTACAGAAACAG tgtgactgtaggatccgtctaagtccataattcttttcttggcttttcagAGATACCTCACAGTAGGGACTGCCTGTTGCACAGAATTACAGAAACAGgtagggatttactgctgctcaaaccagctgcttcccattgacatagaaat Alignment from Exonerate_protein2genome AGATACCACACAGCAGAGACTGC-TGTTGCACAGAGTTACAGAAACAG tgtgactgtaggatccgtctaagtccataattcttttcttggcttttcagAGATACCTCACAGTAGGGACTGCCTGTTGCACAGAATTACAGAAACAGgtagggatttactgctgctcaaaccagctgcttcccattgacatagaaat Alignment from Exonerate_coding2genome AGATACCACACAGCAGAGACTGC-TGTTGCACAGAGTTACAGAAACAG tgtgactgtaggatccgtctaagtccataattcttttcttggcttttcagAGATACCTCACAGTAGGGACTGCCTGTTGCACAGAATTACAGAAACAGgtagggatttactgctgctcaaaccagctgcttcccattgacatagaaat Alignment from GeneWise AGATACCACACAGCAGAGACTGC-TGTTGCACAGAGTTACAGAAACAG tgtgactgtaggatccgtctaagtccataattcttttcttggcttttcagAGATACCTCACAGTAGGGACTGCCTGTTGCACAGAATTACAGAAACAGgtagggatttactgctgctcaaaccagctgcttcccattgacatagaaat #### Tle4_ID3625_13 --> 2 - 0 Original Alignment caTCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGC-CCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG tgaaaactaaggaaggtgtgactgtattaataaattctactctcttttagcaTCCAGCCTAAGGACTCCAGTAGCGGTACCTTGTCCATACCCAACACCATTTGGGATTGTGCCACATGCGGGAATGAATGGAGAGCTAACCAGCCCCTGGGGCTGCTTATGGTGGGCTCCACAACGTCTCCCCCCAGATGAGTGCTTCTACTGCTGCGGCCACAGCAGCAGCAGCTTATGGAAGATCACCTGTGgtaagacttgcatacatataagtgtgttaaaatgcaaagtgattgcattt Alignment from CESAR caTCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCC-GGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG tgaaaactaaggaaggtgtgactgtattaataaattctactctcttttagcaTCCAGCCTAAGGACTCCAGTAGCGGTACCTTGTCCATACCCAACACCATTTGGGATTGTGCCACATGCGGGAATGAATGGAGAGCTAACCAGCCCCTGGGGCTGCTTATGGTGGGCTCCACAACGTCTCCCCCCAGATGAGTGCTTCTACTGCTGCGGCCACAGCAGCAGCAGCTTATGGAAGATCACCTGTGgtaagacttgcatacatataagtgtgttaaaatgcaaagtgattgcattt Alignment from Spaln_aa2Genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGC-CCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG tgaaaactaaggaaggtgtgactgtattaataaattctactctcttttagCATCCAGCCTAAGGACTCCAGTAGCGGTACCTTGTCCATACCCAACACCATTTGGGATTGTGCCACATGCGGGAATGAATGGAGAGCTAACCAGCcCCTGGGGCTGCTTATGGTGGGCTCCACAACGTCTCCCCCCAGATGAGTGCTTCTACTGCTGCGGCCACAGCAGCAGCAGCTTATGGAAGATCACCTGTGgtaagacttgcatacatataagtgtgttaaaatgcaaagtgattgcattt Alignment from Spaln_nt2Genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCC-GGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG tgaaaactaaggaaggtgtgactgtattaataaattctactctcttttagCATCCAGCCTAAGGACTCCAGTAGCGGTACCTTGTCCATACCCAACACCATTTGGGATTGTGCCACATGCGGGAATGAATGGAGAGCTAACCAGCCCCTGGGGCTGCTTATGGTGGGCTCCACAACGTCTCCCCCCAGATGAGTGCTTCTACTGCTGCGGCCACAGCAGCAGCAGCTTATGGAAGATCACCTGTGgtaagacttgcatacatataagtgtgttaaaatgcaaagtgattgcattt Alignment from Pairagon CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGCCCC-GGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG tgaaaactaaggaaggtgtgactgtattaataaattctactctcttttagCATCCAGCCTAAGGACTCCAGTAGCGGTACCTTGTCCATACCCAACACCATTTGGGATTGTGCCACATGCGGGAATGAATGGAGAGCTAACCAGCCCCTGGGGCTGCTTATGGTGGGCTCCACAACGTCTCCCCCCAGATGAGTGCTTCTACTGCTGCGGCCACAGCAGCAGCAGCTTATGGAAGATCACCTGTGgtaagacttgcatacatataagtgtgttaaaatgcaaagtgattgcattt Alignment from Exonerate_protein2genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGC-CCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG tgaaaactaaggaaggtgtgactgtattaataaattctactctcttttagCATCCAGCCTAAGGACTCCAGTAGCGGTACCTTGTCCATACCCAACACCATTTGGGATTGTGCCACATGCGGGAATGAATGGAGAGCTAACCAGCCCCTGGGGCTGCTTATGGTGGGCTCCACAACGTCTCCCCCCAGATGAGTGCTTCTACTGCTGCGGCCACAGCAGCAGCAGCTTATGGAAGATCACCTGTGgtaagacttgcatacatataagtgtgttaaaatgcaaagtgattgcattt Alignment from Exonerate_coding2genome CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACCAGC-CCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG tgaaaactaaggaaggtgtgactgtattaataaattctactctcttttagCATCCAGCCTAAGGACTCCAGTAGCGGTACCTTGTCCATACCCAACACCATTTGGGATTGTGCCACATGCGGGAATGAATGGAGAGCTAACCAGCCCCTGGGGCTGCTTATGGTGGGCTCCACAACGTCTCCCCCCAGATGAGTGCTTCTACTGCTGCGGCCACAGCAGCAGCAGCTTATGGAAGATCACCTGTGgtaagacttgcatacatataagtgtgttaaaatgcaaagtgattgcattt Alignment from GeneWise CATCAAGCCTGAGGACCCCGATGGCTGTACCTTGTCCATATCCAACCCCCTTTGGGATCGTGCCCCATGCTGGGATGAACGGAGAGCTGACC-AGCCCCGGAGCCGCCTATGCTGGGCTACACAACATCTCCCCCCAGATGAGTGCAGCTGCTGCTGCAGCTGCGGCAGCAGCAGCCTATGGAAGATCACCTGTG tgaaaactaaggaaggtgtgactgtattaataaattctactctcttttagCATCCAGCCTAAGGACTCCAGTAGCGGTACCTTGTCCATACCCAACACCATTTGGGATTGTGCCACATGCGGGAATGAATGGAGAGCTAACCAGCCCCTGGGGCTGCTTATGGTGGGCTCCACAACGTCTCCCCCCAGATGAGTGCTTCTACTGCTGCGGCCACAGCAGCAGCAGCTTATGGAAGATCACCTGTGgtaagacttgcatacatataagtgtgttaaaatgcaaagtgattgcattt #### Tm7sf2_ID1411_9 --> 2 - 1 Original Alignment gtCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGG-GGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTg tgcctaattgaacctgagggcttcgagcgatgtttttttgtcttaaacaggtCTAGACACAATCCCCACTGCCACAGGTAGACATCTGCTAGTGTCTGGGTGGTGGCGGTATGGTACAGCATCCCAACTACCTAGGAGACCTCATCATGGCTCTTGCTTGGTCCTTGCCCTGTggtaaggaggtggggagagtgaggaccatatacctgctacaatgagatccc Alignment from CESAR gtCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGG-GGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTg tgcctaattgaacctgagggcttcgagcgatgtttttttgtcttaaacaggtCTAGACACAATCCCCACTGCCACAGGTAGACATCTGCTAGTGTCTGGGTGGTGGCGGTATGGTACAGCATCCCAACTACCTAGGAGACCTCATCATGGCTCTTGCTTGGTCCTTGCCCTGTggtaaggaggtggggagagtgaggaccatatacctgctacaatgagatccc Alignment from Spaln_aa2Genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGG-GGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG tgcctaattgaacctgagggcttcgagcgatgtttttttgtcttaaacagGTCTAGACACAATCCCCACTGCCACAGGTAGACATCTGCTAGTGTCTGGGTGGTGGcGGTATGGTACAGCATCCCAACTACCTAGGAGACCTCATCATGGCTCTTGCTTGGTCCTTGCCCTGTGgtaaggaggtggggagagtgaggaccatatacctgctacaatgagatccc Alignment from Spaln_nt2Genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGG-GGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG tgcctaattgaacctgagggcttcgagcgatgtttttttgtcttaaacagGTCTAGACACAATCCCCACTGCCACAGGTAGACATCTGCTAGTGTCTGGGTGGTGGCGGTATGGTACAGCATCCCAACTACCTAGGAGACCTCATCATGGCTCTTGCTTGGTCCTTGCCCTGTGgtaaggaggtggggagagtgaggaccatatacctgctacaatgagatccc Alignment from Pairagon GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGG-GGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG tgcctaattgaacctgagggcttcgagcgatgtttttttgtcttaaacagGTCTAGACACAATCCCCACTGCCACAGGTAGACATCTGCTAGTGTCTGGGTGGTGGCGGTATGGTACAGCATCCCAACTACCTAGGAGACCTCATCATGGCTCTTGCTTGGTCCTTGCCCTGTGgtaaggaggtggggagagtgaggaccatatacctgctacaatgagatccc Alignment from Exonerate_protein2genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGG-GGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG tgcctaattgaacctgagggcttcgagcgatgtttttttgtcttaaacagGTCTAGACACAATCCCCACTGCCACAGGTAGACATCTGCTAGTGTCTGGGTGGTGGCGGTATGGTACAGCATCCCAACTACCTAGGAGACCTCATCATGGCTCTTGCTTGGTCCTTGCCCTGTGgtaaggaggtggggagagtgaggaccatatacctgctacaatgagatccc Alignment from Exonerate_coding2genome GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGG-GGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG tgcctaattgaacctgagggcttcgagcgatgtttttttgtcttaaacagGTCTAGACACAATCCCCACTGCCACAGGTAGACATCTGCTAGTGTCTGGGTGGTGGCGGTATGGTACAGCATCCCAACTACCTAGGAGACCTCATCATGGCTCTTGCTTGGTCCTTGCCCTGTGgtaaggaggtggggagagtgaggaccatatacctgctacaatgagatccc Alignment from GeneWise GTCTTGAGACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGG-GGTATGGTTCGACACCCCAACTACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTG tgcctaattgaacctgagggcttcgagcgatgtttttttgtcttaaacagGTCTAGACACAATCCCCACTGCCACAGGTAGACATCTGCTAGTGTCTGGGTGGTGGCGGTATGGTACAGCATCCCAACTACCTAGGAGACCTCATCATGGCTCTTGCTTGGTCCTTGCCCTGTGgtaaggaggtggggagagtgaggaccatatacctgctacaatgagatccc #### Tm7sf2_ID1416_4 --> 2 - 1 Original Alignment gcTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTG-GGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAg ctttcctagtatgtgtactaaccctgagctgctgtctgttttctgcacaggtTACCAGGCTGTGGTGCTATCAGCACTGTTGATGGGGCTGCGGTGTATCAGTGGGGCTCCCCCTGGGGGGACTACCTGGAATGCTTCTGCCACTGGCCTTTGCAACCACTCTCACCAGGTTTGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTTCTGGGGGAAACTCAggtgcgtagggtcccaaccaggtctcaacaggtgagggtgcagaaaggatg Alignment from CESAR gcTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTG-GGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAg ctttcctagtatgtgtactaaccctgagctgctgtctgttttctgcacaggtTACCAGGCTGTGGTGCTATCAGCACTGTTGATGGGGCTGCGGTGTATCAGTGGGGCTCCCCCTGGGGGGACTACCTGGAATGCTTCTGCCACTGGCCTTTGCAACCACTCTCACCAGGTTTGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTTCTGGGGGAAACTCAggtgcgtagggtcccaaccaggtctcaacaggtgagggtgcagaaaggatg Alignment from Spaln_aa2Genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTG-GGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtatgtgtactaaccctgagctgctgtctgttttctgcacagGTTACCAGGCTGTGGTGCTATCAGCACTGTTGATGGGGCTGcGGTGTATCAGTGGGGCTCCCCCTGGGGGGACTACCTGGAATGCTTCTGCCACTGGCCTTTGCAACCACTCTCACCAGGTTTGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTTCTGGGGGAAACTCAGgtgcgtagggtcccaaccaggtctcaacaggtgagggtgcagaaaggatg Alignment from Spaln_nt2Genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTG-GGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtatgtgtactaaccctgagctgctgtctgttttctgcacagGTTACCAGGCTGTGGTGCTATCAGCACTGTTGATGGGGCTGCGGTGTATCAGTGGGGCTCCCCCTGGGGGGACTACCTGGAATGCTTCTGCCACTGGCCTTTGCAACCACTCTCACCAGGTTTGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTTCTGGGGGAAACTCAGgtgcgtagggtcccaaccaggtctcaacaggtgagggtgcagaaaggatg Alignment from Pairagon GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGG-GTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtatgtgtactaaccctgagctgctgtctgttttctgcacagGTTACCAGGCTGTGGTGCTATCAGCACTGTTGATGGGGCTGCGGTGTATCAGTGGGGCTCCCCCTGGGGGGACTACCTGGAATGCTTCTGCCACTGGCCTTTGCAACCACTCTCACCAGGTTTGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTTCTGGGGGAAACTCAGgtgcgtagggtcccaaccaggtctcaacaggtgagggtgcagaaaggatg Alignment from Exonerate_protein2genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTG-GGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtatgtgtactaaccctgagctgctgtctgttttctgcacagGTTACCAGGCTGTGGTGCTATCAGCACTGTTGATGGGGCTGCGGTGTATCAGTGGGGCTCCCCCTGGGGGGACTACCTGGAATGCTTCTGCCACTGGCCTTTGCAACCACTCTCACCAGGTTTGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTTCTGGGGGAAACTCAGgtgcgtagggtcccaaccaggtctcaacaggtgagggtgcagaaaggatg Alignment from Exonerate_coding2genome GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTG-GGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtatgtgtactaaccctgagctgctgtctgttttctgcacagGTTACCAGGCTGTGGTGCTATCAGCACTGTTGATGGGGCTGCGGTGTATCAGTGGGGCTCCCCCTGGGGGGACTACCTGGAATGCTTCTGCCACTGGCCTTTGCAACCACTCTCACCAGGTTTGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTTCTGGGGGAAACTCAGgtgcgtagggtcccaaccaggtctcaacaggtgagggtgcagaaaggatg Alignment from GeneWise GCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGG-CTGGGGGTGTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACCAGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGGGAAACTCAG ctttcctagtatgtgtactaaccctgagctgctgtctgttttctgcacagGTTACCAGGCTGTGGTGCTATCAGCACTGTTGATGGGGCTGCGGTGTATCAGTGGGGCTCCCCCTGGGGGGACTACCTGGAATGCTTCTGCCACTGGCCTTTGCAACCACTCTCACCAGGTTTGTCTTCAGTCTCCTTCTCTACACAAAGGCTTTGGTAACACCTGCCTCAGCTCTGACTTCTGGGGGAAACTCAGgtgcgtagggtcccaaccaggtctcaacaggtgagggtgcagaaaggatg #### Tm7sf2_ID1417_3 --> 0 - 1 Original Alignment GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTG-CGCTACCCTATTAATg tatgctgtgatatgatccatgtcctgtgacttgtaattatttatgactagGTAGCTGAAGGTGTAGAACTGAAGGATAAGAGTCGCTTGCCAGTACCCTATTAATggtacatgagtacccctaccctgcataaatcagctccctctggagatgaaa Alignment from CESAR GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTG-CGCTACCCTATTAATg tatgctgtgatatgatccatgtcctgtgacttgtaattatttatgactagGTAGCTGAAGGTGTAGAACTGAAGGATAAGAGTCGCTTGCCAGTACCCTATTAATggtacatgagtacccctaccctgcataaatcagctccctctggagatgaaa Alignment from Spaln_aa2Genome GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTG-CGCTACCCTATTAATG tatgctgtgatatgatccatgtcctgtgacttgtaattatttatgactagGTAGCTGAAGGTGTAGAACTGAAGGATAAGAGTCGCTTGcCAGTACCCTATTAATGgtacatgagtacccctaccctgcataaatcagctccctctggagatgaaa Alignment from Spaln_nt2Genome GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGC-TACCCTATTAATG tatgctgtgatatgatccatgtcctgtgacttgtaattatttatgactagGTAGCTGAAGGTGTAGAACTGAAGGATAAGAGTCGCTTGCCAGTACCCTATTAATGgtacatgagtacccctaccctgcataaatcagctccctctggagatgaaa Alignment from Pairagon GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTG-CGCTACCCTATTAATG tatgctgtgatatgatccatgtcctgtgacttgtaattatttatgactagGTAGCTGAAGGTGTAGAACTGAAGGATAAGAGTCGCTTGCCAGTACCCTATTAATGgtacatgagtacccctaccctgcataaatcagctccctctggagatgaaa Alignment from Exonerate_protein2genome GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTG-CGCTACCCTATTAATG tatgctgtgatatgatccatgtcctgtgacttgtaattatttatgactagGTAGCTGAAGGTGTAGAACTGAAGGATAAGAGTCGCTTGCCAGTACCCTATTAATGgtacatgagtacccctaccctgcataaatcagctccctctggagatgaaa Alignment from Exonerate_coding2genome GAGTCGCCTGCGCTACCCTATTAAT TATGCTGTGATATGATCCATGTCCTgtgacttgtaattatttatgactaggtagctgaaggtgtagaactgaaggataagagtcgcttgccagtaccctattaatggtacatgagtacccctaccctgcataaatcagctccctctggagatgaaa Alignment from GeneWise GTGGCCGAAGGCCTGGAACTGAAGGACAAGAGTCGCCTGCGC tatgctgtgatatgatccatgtcctgtgacttgtaattatttatgactagGTAGCTGAAGGTGTAGAACTGAAGGATAAGAGTCGCTTGCCAgtaccctattaatggtacatgagtacccctaccctgcataaatcagctccctctggagatgaaa #### Tmem179b_ID2370_3 --> 1 - 2 Original Alignment aGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCT-TTCTGCAATTCCATCATCTCCTTGAACCTTACAATTag ctttgtggtaggttctactgagactaatatgttcatcacatctgttatagaGGCTCTATAGGGCTCCGGATTGCTCTGGCCATTTCAGCTACGGCTATCTTCCTAATTTTAGTATCTGCCTGCATAGTTCGATTCGGCACGAATTCTCTTCTGTAATTCCATCATCTCTCTGAATCTTACAATTaggtcagctgtgggacaggtccactcagaggtgcaaactaagttcatttcct Alignment from CESAR aGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCT-TTCTGCAATTCCATCATCTCCTTGAACCTTACAATTag ctttgtggtaggttctactgagactaatatgttcatcacatctgttatagaGGCTCTATAGGGCTCCGGATTGCTCTGGCCATTTCAGCTACGGCTATCTTCCTAATTTTAGTATCTGCCTGCATAGTTCGATTCGGCACGAATTCTCTTCTGTAATTCCATCATCTCTCTGAATCTTACAATTaggtcagctgtgggacaggtccactcagaggtgcaaactaagttcatttcct Alignment from Spaln_aa2Genome AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCT-TTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG ctttgtggtaggttctactgagactaatatgttcatcacatctgttatagAGGCTCTATAGGGCTCCGGATTGCTCTGGCCATTTCAGCTACGGCTATCTTCCTAATTTTAGTATCTGCCTGCATAGTTCGATTCGGCACGAATTCTcTTCTGTAATTCCATCATCTCTCTGAATCTTACAATTAGgtcagctgtgggacaggtccactcagaggtgcaaactaagttcatttcct Alignment from Spaln_nt2Genome AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCT-TTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG ctttgtggtaggttctactgagactaatatgttcatcacatctgttatagAGGCTCTATAGGGCTCCGGATTGCTCTGGCCATTTCAGCTACGGCTATCTTCCTAATTTTAGTATCTGCCTGCATAGTTCGATTCGGCACGAATTCTCTTCTGTAATTCCATCATCTCTCTGAATCTTACAATTAGgtcagctgtgggacaggtccactcagaggtgcaaactaagttcatttcct Alignment from Pairagon AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCT-TTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG ctttgtggtaggttctactgagactaatatgttcatcacatctgttatagAGGCTCTATAGGGCTCCGGATTGCTCTGGCCATTTCAGCTACGGCTATCTTCCTAATTTTAGTATCTGCCTGCATAGTTCGATTCGGCACGAATTCTCTTCTGTAATTCCATCATCTCTCTGAATCTTACAATTAGgtcagctgtgggacaggtccactcagaggtgcaaactaagttcatttcct Alignment from Exonerate_protein2genome AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCT-TTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG ctttgtggtaggttctactgagactaatatgttcatcacatctgttatagAGGCTCTATAGGGCTCCGGATTGCTCTGGCCATTTCAGCTACGGCTATCTTCCTAATTTTAGTATCTGCCTGCATAGTTCGATTCGGCACGAATTCTCTTCTGTAATTCCATCATCTCTCTGAATCTTACAATTAGgtcagctgtgggacaggtccactcagaggtgcaaactaagttcatttcct Alignment from Exonerate_coding2genome AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAATTCT-TTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG ctttgtggtaggttctactgagactaatatgttcatcacatctgttatagAGGCTCTATAGGGCTCCGGATTGCTCTGGCCATTTCAGCTACGGCTATCTTCCTAATTTTAGTATCTGCCTGCATAGTTCGATTCGGCACGAATTCTCTTCTGTAATTCCATCATCTCTCTGAATCTTACAATTAGgtcagctgtgggacaggtccactcagaggtgcaaactaagttcatttcct Alignment from GeneWise AGGTTCTATAGGGCTCCGAATTGCTTTGGCCATCTCAGCTACAGCCATCTTCCTGATCTTAGTGTCTGCCTGTATACTTCGATTTGGCACCAAT-TCTTTCTGCAATTCCATCATCTCCTTGAACCTTACAATTAG ctttgtggtaggttctactgagactaatatgttcatcacatctgttatagAGGCTCTATAGGGCTCCGGATTGCTCTGGCCATTTCAGCTACGGCTATCTTCCTAATTTTAGTATCTGCCTGCATAGTTCGATTCGGCACGAATTCTCTTCTGTAATTCCATCATCTCTCTGAATCTTACAATTAGgtcagctgtgggacaggtccactcagaggtgcaaactaagttcatttcct #### Trim8_ID9936_5 --> 1 - 1 Original Alignment gACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTG-TTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAg taagttaaagcacctcatcttctagaacctttcgtctctcttgtttgcaggACCCAGACCTGCACAAGCAGTAGCCTCTCTCCCCCTAAGATTGGCCACCTGAACTCCAATCTGCTTTCTAAATGAGGTAACCAAGAAGGAGAAACAGTTACGGAAAATGCTTGATggtgagatgttaatgggccactgtacaggtgatgcccagtctgcaccccat Alignment from CESAR gACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTG-TTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAg taaagtaaagcacctcatcttctagaacctttcgtctctcttgtttgcaggACCCAGACCTGCACAAGCAGTAGCCTCTCTCCCCCTAAGATTGGCCACCTGAACTCCAATCTGCTTTCTAAATGAGGTAACCAAGAAGGAGAAACAGTTACGGAAAATGCTTGATggtgagatgttaatgggccactgtacaggtgatgcccagtctgcaccccat Alignment from Spaln_aa2Genome GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTG-TTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG taagttaaagcacctcatcttctagaacctttcgtctctcttgtttgcagGACCCAGACCTGCACAAGCAGTAGCCTCTCTCCCCCTAAGATTGGCCACCTGAACTCCAATCTGcTTTCTAAATGAGGTAACCAAGAAGGAGAAACAGTTACGGAAAATGCTTGATGgtgagatgttaatgggccactgtacaggtgatgcccagtctgcaccccat Alignment from Spaln_nt2Genome GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTG-TTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG taagttaaagcacctcatcttctagaacctttcgtctctcttgtttgcagGACCCAGACCTGCACAAGCAGTAGCCTCTCTCCCCCTAAGATTGGCCACCTGAACTCCAATCTGCTTTCTAAATGAGGTAACCAAGAAGGAGAAACAGTTACGGAAAATGCTTGATGgtgagatgttaatgggccactgtacaggtgatgcccagtctgcaccccat Alignment from Pairagon GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTG-TTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG taagttaaagcacctcatcttctagaacctttcgtctctcttgtttgcagGACCCAGACCTGCACAAGCAGTAGCCTCTCTCCCCCTAAGATTGGCCACCTGAACTCCAATCTGCTTTCTAAATGAGGTAACCAAGAAGGAGAAACAGTTACGGAAAATGCTTGATGgtgagatgttaatgggccactgtacaggtgatgcccagtctgcaccccat Alignment from Exonerate_protein2genome GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTG-TTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG taagttaaagcacctcatcttctagaacctttcgtctctcttgtttgcagGACCCAGACCTGCACAAGCAGTAGCCTCTCTCCCCCTAAGATTGGCCACCTGAACTCCAATCTGCTTTCTAAATGAGGTAACCAAGAAGGAGAAACAGTTACGGAAAATGCTTGATGgtgagatgttaatgggccactgtacaggtgatgcccagtctgcaccccat Alignment from Exonerate_coding2genome GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAGCTG-TTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG taagttaaagcacctcatcttctagaacctttcgtctctcttgtttgcagGACCCAGACCTGCACAAGCAGTAGCCTCTCTCCCCCTAAGATTGGCCACCTGAACTCCAATCTGCTTTCTAAATGAGGTAACCAAGAAGGAGAAACAGTTACGGAAAATGCTTGATGgtgagatgttaatgggccactgtacaggtgatgcccagtctgcaccccat Alignment from GeneWise GACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCACCTGAACTCCAAG-CTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAG taagttaaagcacctcatcttctagaacctttcgtctctcttgtttgcagGACCCAGACCTGCACAAGCAGTAGCCTCTCTCCCCCTAAGATTGGCCACCTGAACTCCAATCTGCTTTCTAAATGAGGTAACCAAGAAGGAGAAACAGTTACGGAAAATGCTTGATGgtgagatgttaatgggccactgtacaggtgatgcccagtctgcaccccat #### Trmt112_ID1861_2 --> 0 - 0 Original Alignment GCCACTGAGGTCCGCATC-AACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttcactgcctcttctctaccacagGCAACTGAAGTCTGTATTCAACCCTGTGGAATTTAACCCAGAGTTAGTGGCACGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGATACTgtaagagcctcgttcttcctacaatatcttagatcctgaacctctttctg Alignment from CESAR GCCACTGAGGTCCGCATC-AACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttcactgcctcttctctaccacagGCAACTGAAGTCTGTATTCAACCCTGTGGAATTTAACCCAGAGTTAGTGGCACGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGATACTgtaagagcctcgttcttcctacaatatcttagatcctgaacctctttctg Alignment from Spaln_aa2Genome GCAGGCCACTGAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttcactgcctcttctctaccacagGCAACTGAAGTCTGTA---TTCAACCCTGTGGAATTTAACCCAGAGTTAGTGGCACGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGATACTgtaagagcctcgttcttcctacaatatcttagatcctgaacctctttctg Alignment from Spaln_nt2Genome GCCACTGAGGTCCGCAT-CAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttcactgcctcttctctaccacagGCAACTGAAGTCTGTATTCAACCCTGTGGAATTTAACCCAGAGTTAGTGGCACGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGATACTgtaagagcctcgttcttcctacaatatcttagatcctgaacctctttctg Alignment from Pairagon GCCACTGAGGTCCGCA-TCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttcactgcctcttctctaccacagGCAACTGAAGTCTGTATTCAACCCTGTGGAATTTAACCCAGAGTTAGTGGCACGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGATACTgtaagagcctcgttcttcctacaatatcttagatcctgaacctctttctg Alignment from Exonerate_protein2genome GCCACTGAGGTCCGCATC-AACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttcactgcctcttctctaccacagGCAACTGAAGTCTGTATTCAACCCTGTGGAATTTAACCCAGAGTTAGTGGCACGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGATACTgtaagagcctcgttcttcctacaatatcttagatcctgaacctctttctg Alignment from Exonerate_coding2genome ATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttcactgcctcttctctaccacaggcaactgaagtctgtaTTCAACCCTGTGGAATTTAACCCAGAGTTAGTGGCACGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGATACTgtaagagcctcgttcttcctacaatatcttagatcctgaacctctttctg Alignment from GeneWise GAGGTCCGCATCAACCCCGTGGAGTTCAACCCGGAGTTCGTGGCGCGGATGATCCCCAAAGTGGAGTGGGCGGCGCTTGTGCAGGCAGCGGACACC atgtagacctaacctcactgaatgttttcactgcctcttctctaccacaggcaactgaagTCTGTA---TTCAACCCTGTGGAATTTAACCCAGAGTTAGTGGCACGTATGATCCCCAAAGTGGAGTGGGCAGCACTTGTTCGGGCTGCAGATACTgtaagagcctcgttcttcctacaatatcttagatcctgaacctctttctg #### Tsga10ip_ID978_2 --> 0 - 2 Original Alignment ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCT-GAGAGCACCCCCCGGAAGCACag atgtagaacaaggtcggatcccacctccctgattttcttgccttcccaagACTAATGCCCGACTTACAGGAAATTGGCGGTTCTCCCAGGTTTTATCTGGACTGGGGGTAGATGATGATCAGCTACTAGCTGAGGCAGGTATTGCTCGAAAGCACTCCCCGGAAGCACaggtgagcggtgcaaggatctggtctaccatatcattacgcgtgtcttgccc Alignment from CESAR ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCT-GAGAGCACCCCCCGGAAGCACag atgtagaacaaggtcggatcccacctccctgattttcttgccttcccaagACTAATGCCCGACTTACAGGAAATTGGCGGTTCTCCCAGGTTTTATCTGGACTGGGGGTAGATGATGATCAGCTACTAGCTGAGGCAGGTATTGCTCGAAAGCACTCCCCGGAAGCACaggtgagcggtgcaaggatctggtctaccatatcattacgcgtgtcttgccc Alignment from Spaln_aa2Genome ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCT-GAGAGCACCCCCCGGAAGCACAG atgtagaacaaggtcggatcccacctccctgattttcttgccttcccaagACTAATGCCCGACTTACAGGAAATTGGCGGTTCTCCCAGGTTTTATCTGGACTGGGGGTAGATGATGATCAGCTACTAGCTGAGGCAGGTATTGCTcGAAAGCACTCCCCGGAAGCACAGgtgagcggtgcaaggatctggtctaccatatcattacgcgtgtcttgccc Alignment from Spaln_nt2Genome ACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCT-GAGAGCACCCCCCGGAAGCACAG atgtagaacaaggtcggatcccacctccctgattttcttgccttcccaagACTAATGCCCGACTTACAGGAAATTGGCGGTTCTCCCAGGTTTTATCTGGACTGGGGGTAGATGATGATCAGCTACTAGCTGAGGCAGGTATTGCTCGAAAGCACTCCCCGGAAGCACAGgtgagcggtgcaaggatctggtctaccatatcattacgcgtgtcttgccc Alignment from Pairagon CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCT-GAGAGCACCCCCCGGAAGCACAG atgtagaacaaggtcggatcccacctccctgattttcttgccttcccAAGACTAATGCCCGACTTACAGGAAATTGGCGGTTCTCCCAGGTTTTATCTGGACTGGGGGTAGATGATGATCAGCTACTAGCTGAGGCAGGTATTGCTCGAAAGCACTCCCCGGAAGCACAGgtgagcggtgcaaggatctggtctaccatatcattacgcgtgtcttgccc Alignment from Exonerate_protein2genome CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCT-GAGAGCACCCCCCGGAAGCACAG atgtagaacaaggtcggatcccacctccctgattttcttgccttcccAAGACTAATGCCCGACTTACAGGAAATTGGCGGTTCTCCCAGGTTTTATCTGGACTGGGGGTAGATGATGATCAGCTACTAGCTGAGGCAGGTATTGCTCGAAAGCACTCCCCGGAAGCACAGgtgagcggtgcaaggatctggtctaccatatcattacgcgtgtcttgccc Alignment from Exonerate_coding2genome CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGCAATGCT-GAGAGCACCCCCCGGAAGCACAG atgtagaacaaggtcggatcccacctccctgattttcttgccttcccAAGACTAATGCCCGACTTACAGGAAATTGGCGGTTCTCCCAGGTTTTATCTGGACTGGGGGTAGATGATGATCAGCTACTAGCTGAGGCAGGTATTGCTCGAAAGCACTCCCCGGAAGCACAGgtgagcggtgcaaggatctggtctaccatatcattacgcgtgtcttgccc Alignment from GeneWise CAGACCAACGCCAGACTCACTGCAAATCGGCGCTTCTCCCAGGTGCTGTCAGCACTGGGGGTAGACGAGGACCAGCTGCTGGCCGAGGCAGGC-AATGCTGAGAGCACCCCCCGGAAGCACAG atgtagaacaaggtcggatcccacctccctgattttcttgccttcccAAGACTAATGCCCGACTTACAGGAAATTGGCGGTTCTCCCAGGTTTTATCTGGACTGGGGGTAGATGATGATCAGCTACTAGCTGAGGCAGGTATTGCTCGAAAGCACTCCCCGGAAGCACAGgtgagcggtgcaaggatctggtctaccatatcattacgcgtgtcttgccc #### Ubxn1_ID2438_2 --> 1 - 2 Original Alignment gGAGAAGGCTCTGGCCCTC-ACAGGGAACCAGGGCATCGAGGCTGCGATGGATtg agggtaattatggttttaggtacaacattgttcttcatttgtacatgtaggGAGAAGGCTCTTGCCCTGCACAGGAAACCATGGCATCGAAGCTGCAATGGCTtggtgagtagacaatctgaacacttggtggtgaataaggtgggccccagaat Alignment from CESAR gGAGAAGGCTCTGGCCCTC-ACAGGGAACCAGGGCATCGAGGCTGCGATGGATtg agggtaattatggttttaggtacaacattgttcttcatttgtacatgtaggGAGAAGGCTCTTGCCCTGCACAGGAAACCATGGCATCGAAGCTGCAATGGCTtggtgagtagacaatctgaacacttggtggtgaataaggtgggccccagaat Alignment from Spaln_aa2Genome GGAGAAGGCTCTGGCCCTC-ACAGGGAACCAGGGCATCGAGGCTGCGATGGATTG agggtaattatggttttaggtacaacattgttcttcatttgtacatgtagGGAGAAGGCTCTTGCCCTGcACAGGAAACCATGGCATCGAAGCTGCAATGGCTTGgtgagtagacaatctgaacacttggtggtgaataaggtgggccccagaat Alignment from Spaln_nt2Genome GGAGAAGGCTCTGGCCCT-CACAGGGAACCAGGGCATCGAGGCTGCGATGGATTG agggtaattatggttttaggtacaacattgttcttcatttgtacatgtagGGAGAAGGCTCTTGCCCTGCACAGGAAACCATGGCATCGAAGCTGCAATGGCTTGgtgagtagacaatctgaacacttggtggtgaataaggtgggccccagaat Alignment from Pairagon GGAGAAGGCTCTGGCCCT-CACAGGGAACCAGGGCATCGAGGCTGCGATGGATTG agggtaattatggttttaggtacaacattgttcttcatttgtacatgtagGGAGAAGGCTCTTGCCCTGCACAGGAAACCATGGCATCGAAGCTGCAATGGCTTGgtgagtagacaatctgaacacttggtggtgaataaggtgggccccagaat Alignment from Exonerate_protein2genome GGAGAAGGCTCTGGCCCTC-ACAGGGAACCAGGGCATCGAGGCTGCGATGGATTG agggtaattatggttttaggtacaacattgttcttcatttgtacatgtagGGAGAAGGCTCTTGCCCTGCACAGGAAACCATGGCATCGAAGCTGCAATGGCTTGgtgagtagacaatctgaacacttggtggtgaataaggtgggccccagaat Alignment from Exonerate_coding2genome agggtaattatggttttaggtacaacattgttcttcatttgtacatgtagggagaaggctcttgccctgcacaggaaaccatggcatcgaagctgcaatggcttggtgagtagacaatctgaacacttggtggtgaataaggtgggccccagaat Alignment from GeneWise agggtaattatggttttaggtacaacattgttcttcatttgtacatgtagggagaaggctcttgccctgcacaggaaaccatggcatcgaagctgcaatggcttggtgagtagacaatctgaacacttggtggtgaataaggtgggccccagaat #### Ubxn1_ID2442_6 --> 1 - 0 Original Alignment aCAAAGGGTTCGAGAAAAA-ATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG tttgtcttgcgtctatgtttgttttataattattattattattattatagaCAGAGAACTCGTGAAAAGCATTGAAAGAGACAGAGCCGAAAGGGCCAAGAAAgtgagtgatcacaaagttagtgcttacttgaggagggaatctagttaact Alignment from CESAR aCAAAGGGTTCGAGAAAAA-ATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG tttgtcttgcgtctatgtttgttttataattattattattattattatagaCAGAGAACTCGTGAAAAGCATTGAAAGAGACAGAGCCGAAAGGGCCAAGAAAgtgagtgatcacaaagttagtgcttacttgaggagggaatctagttaact Alignment from Spaln_aa2Genome ACAAAGGGTTCGAGAAAAAATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG tttgtcttgcgtctatgtttgttttataattattattattattattatagacagAGAACTCGTGAAA---AGCATTGAAAGAGACAGAGCCGAAAGGGCCAAGAAAgtgagtgatcacaaagttagtgcttacttgaggagggaatctagttaact Alignment from Spaln_nt2Genome ACAAAGGGTTCGAGAAAAA-ATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG tttgtcttgcgtctatgtttgttttataattattattattattattatagACAGAGAACTCGTGAAAAGCATTGAAAGAGACAGAGCCGAAAGGGCCAAGAAAgtgagtgatcacaaagttagtgcttacttgaggagggaatctagttaact Alignment from Pairagon ACAAAGGGTTCGAGAAAAA-ATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG tttgtcttgcgtctatgtttgttttataattattattattattattatagACAGAGAACTCGTGAAAAGCATTGAAAGAGACAGAGCCGAAAGGGCCAAGAAAgtgagtgatcacaaagttagtgcttacttgaggagggaatctagttaact Alignment from Exonerate_protein2genome ACAAAGGGTTCGAGAAAAA-ATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG tttgtcttgcgtctatgtttgttttataattattattattattattatagACAGAGAACTCGTGAAAAGCATTGAAAGAGACAGAGCCGAAAGGGCCAAGAAAgtgagtgatcacaaagttagtgcttacttgaggagggaatctagttaact Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise ACAAAGGGTTCGAGAAAAAATTGAAAGGGACAAAGCAGAGAGAGCCAAGAAG tttgtcttgcgtctatgtttgttttataattattattattattattatagacagAGAACTCGTGAAAAGC---ATTGAAAGAGACAGAGCCGAAAGGGCCAAGAAAgtgagtgatcacaaagttagtgcttacttgaggagggaatctagttaact #### Unc93b1_ID214_5 --> 1 - 0 Original Alignment gATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGT-TCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC gaggaaaaaactgtcataggaggcagctacattctattttcacttttcaggATGTCCCAGAAGTACTACGAATATTCACATTACAAGGAGCAGGATGACCAGGGACCTCAACAACGCCCACCACGTGGACCCACACACACCTTTTCTCCTGGTTTTCCAGGCTAACTTTTATAGTTTCTTGCATgtgagtgcgcttcaggaagccttgtggggggtggggggtagttatatcct Alignment from CESAR gATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCC-CACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC gaggaaaaaactgtcataggaggcagctacattctattttcacttttcaggATGTCCCAGAAGTACTACGAATATTCACATTACAAGGAGCAGGATGACCAGGGACCTCAACAACGCCCACCACGTGGACCCACACACACCTTTTCTCCTGGTTTTCCAGGCTAACTTTTATAGTTTCTTGCATgtgagtgcgcttcaggaagccttgtggggggtggggggtagttatatcct Alignment from Spaln_aa2Genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCC-CACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC gaggaaaaaactgtcataggaggcagctacattctattttcacttttcagGATGTCCCAGAAGTACTACGAATATTCACATTACAAGGAGCAGGATGACCAGGGACCTCAACAACGCCCACCACGTGGACCCaCACACACCTTTTCTCCTGGTTTTCCAGGCTAACTTTTATAGTTTCTTGCATgtgagtgcgcttcaggaagccttgtggggggtggggggtagttatatcct Alignment from Spaln_nt2Genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCC-CACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC gaggaaaaaactgtcataggaggcagctacattctattttcacttttcagGATGTCCCAGAAGTACTACGAATATTCACATTACAAGGAGCAGGATGACCAGGGACCTCAACAACGCCCACCACGTGGACCCACACACACCTTTTCTCCTGGTTTTCCAGGCTAACTTTTATAGTTTCTTGCATgtgagtgcgcttcaggaagccttgtggggggtggggggtagttatatcct Alignment from Pairagon GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGTTCC-CACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC gaggaaaaaactgtcataggaggcagctacattctattttcacttttcagGATGTCCCAGAAGTACTACGAATATTCACATTACAAGGAGCAGGATGACCAGGGACCTCAACAACGCCCACCACGTGGACCCACACACACCTTTTCTCCTGGTTTTCCAGGCTAACTTTTATAGTTTCTTGCATgtgagtgcgcttcaggaagccttgtggggggtggggggtagttatatcct Alignment from Exonerate_protein2genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGT-TCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC gaggaaaaaactgtcataggaggcagctacattctattttcacttttcagGATGTCCCAGAAGTACTACGAATATTCACATTACAAGGAGCAGGATGACCAGGGACCTCAACAACGCCCACCACGTGGACCCACACACACCTTTTCTCCTGGTTTTCCAGGCTAACTTTTATAGTTTCTTGCATgtgagtgcgcttcaggaagccttgtggggggtggggggtagttatatcct Alignment from Exonerate_coding2genome GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGT-TCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC gaggaaaaaactgtcataggaggcagctacattctattttcacttttcagGATGTCCCAGAAGTACTACGAATATTCACATTACAAGGAGCAGGATGACCAGGGACCTCAACAACGCCCACCACGTGGACCCACACACACCTTTTCTCCTGGTTTTCCAGGCTAACTTTTATAGTTTCTTGCATgtgagtgcgcttcaggaagccttgtggggggtggggggtagttatatcct Alignment from GeneWise GATGTCCCAGAAGTACTATGAATACTCCCACTACAAGGAGCAAGATGAGCAGGGACCTCAGCAGCGCCCACCACGAGGT-TCCCACGCACCCTATCTCCTGGTTTTCCAGGCCATCTTCTATAGCTTCTTCCAC gaggaaaaaactgtcataggaggcagctacattctattttcacttttcagGATGTCCCAGAAGTACTACGAATATTCACATTACAAGGAGCAGGATGACCAGGGACCTCAACAACGCCCACCACGTGGACCCACACACACCTTTTCTCCTGGTTTTCCAGGCTAACTTTTATAGTTTCTTGCATgtgagtgcgcttcaggaagccttgtggggggtggggggtagttatatcct #### Unc93b1_ID215_6 --> 0 - 1 Original Alignment TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGAC-CTGAACCACACACTGATCAACGTGCAGAGCTGCg cctgctgcaaggacagacctccctaatattctttcttctcatcccatcagTTGAGCTTCACATTTGCTCAGTTGCCAATGATTTACTTCCTCAACAATTATTTGTATGACCTTAAACCATACACTTATCAATGTACAGATATGTggtaagattgtgagaacctggtaactttgtctttgttccatatgcagtcaa Alignment from CESAR TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTG-AACCACACACTGATCAACGTGCAGAGCTGCg cctgctgcaaggacagacctccctaatattctttcttctcatcccatcagTTGAGCTTCACATTTGCTCAGTTGCCAATGATTTACTTCCTCAACAATTATTTGTATGACCTTAAACCATACACTTATCAATGTACAGATATGTggtaagattgtgagaacctggtaactttgtctttgttccatatgcagtcaa Alignment from Spaln_aa2Genome TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTG-AACCACACACTGATCAACGTGCAGAGCTGCG cctgctgcaaggacagacctccctaatattctttcttctcatcccatcagTTGAGCTTCACATTTGCTCAGTTGCCAATGATTTACTTCCTCAACAATTATTTGTATGACCTTaAACCATACACTTATCAATGTACAGATATGTGgtaagattgtgagaacctggtaactttgtctttgttccatatgcagtcaa Alignment from Spaln_nt2Genome TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACCTGAA-CCACACACTGATCAACGTGCAGAGCTGCG cctgctgcaaggacagacctccctaatattctttcttctcatcccatcagTTGAGCTTCACATTTGCTCAGTTGCCAATGATTTACTTCCTCAACAATTATTTGTATGACCTTAAACCATACACTTATCAATGTACAGATATGTGgtaagattgtgagaacctggtaactttgtctttgttccatatgcagtcaa Alignment from Pairagon TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGACC-TGAACCACACACTGATCAACGTGCAGAGCTGCG cctgctgcaaggacagacctccctaatattctttcttctcatcccatcagTTGAGCTTCACATTTGCTCAGTTGCCAATGATTTACTTCCTCAACAATTATTTGTATGACCTTAAACCATACACTTATCAATGTACAGATATGTGgtaagattgtgagaacctggtaactttgtctttgttccatatgcagtcaa Alignment from Exonerate_protein2genome TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGAC-CTGAACCACACACTGATCAACGTGCAGAGCTGCG cctgctgcaaggacagacctccctaatattctttcttctcatcccatcagTTGAGCTTCACATTTGCTCAGTTGCCAATGATTTACTTCCTCAACAATTATTTGTATGACCTTAAACCATACACTTATCAATGTACAGATATGTGgtaagattgtgagaacctggtaactttgtctttgttccatatgcagtcaa Alignment from Exonerate_coding2genome TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGAC-CTGAACCACACACTGATCAACGTGCAGAGCTGCG cctgctgcaaggacagacctccctaatattctttcttctcatcccatcagTTGAGCTTCACATTTGCTCAGTTGCCAATGATTTACTTCCTCAACAATTATTTGTATGACCTTAAACCATACACTTATCAATGTACAGATATGTGgtaagattgtgagaacctggtaactttgtctttgttccatatgcagtcaa Alignment from GeneWise TTGAGCTTCGCGTGTGCCCAGCTGCCCATGATTTACTTCCTCAACAACTACCTGTATGAC-CTGAACCACACACTGATCAACGTGCAGAGCTGCG cctgctgcaaggacagacctccctaatattctttcttctcatcccatcagTTGAGCTTCACATTTGCTCAGTTGCCAATGATTTACTTCCTCAACAATTATTTGTATGACCTTAAACCATACACTTATCAATGTACAGATATGTGgtaagattgtgagaacctggtaactttgtctttgttccatatgcagtcaa #### Vegfb_ID1955_5 --> 1 - 2 Original Alignment aCCAAAAAAAAAGGAG-AGTGCTGTGAAGCCAGACag agctatgacctaacagctgaagtttgacattcagtctatctctctcccagaCCTAAAAAGAAGGAGCTCTACTGTTAGGCCCGACcagtatgggttttccatccctcactttttagtgcaatttggggggtataaaa Alignment from CESAR aCCAAAAAAAAAGGAG-AGTGCTGTGAAGCCAGACag agctatgacctaacagctgaagtttgacattcagtctatctctctcccagaCCTAAAAAGAAGGAGCTCTACTGTTAGGCCCGACcagtatgggttttccatccctcactttttagtgcaatttggggggtataaaa Alignment from Spaln_aa2Genome ACCAAAAAAAAAGGAG-AGTGCTGTGAAGCCAGACAG agctatgacctaacagctgaagtttgacattcagtctatctctctcccagACCTAAAAAGAAGGAGcTCTACTGTTAGGCCCGACCAgtatgggttttccatccctcactttttagtgcaatttggggggtataaaa Alignment from Spaln_nt2Genome ACCAAAAAAAAAGGAGAG-TGCTGTGAAGCCAGACAG agctatgacctaacagctgaagtttgacattcagtctatctctctcccagACCTAAAAAGAAGGAGCTCTACTGTTAGGCCCGACCAgtatgggttttccatccctcactttttagtgcaatttggggggtataaaa Alignment from Pairagon ACCAAAAAAAAAGGAGA-GTGCTGTGAAGCCAGACAG agctatgacctaacagctgaagtttgacattcagtctatctctctcccagACCTAAAAAGAAGGAGCTCTACTGTTAGGCCCGACCAgtatgggttttccatccctcactttttagtgcaatttggggggtataaaa Alignment from Exonerate_protein2genome ACCAAAAAAAAAGGAG-AGTGCTGTGAAGCCAGACAG agctatgacctaacagctgaagtttgacattcagtctatctctctcccagACCTAAAAAGAAGGAGCTCTACTGTTAGGCCCGACCAgtatgggttttccatccctcactttttagtgcaatttggggggtataaaa Alignment from Exonerate_coding2genome agctatgacctaacagctgaagtttgacattcagtctatctctctcccagacctaaaaagaaggagctctactgttaggcccgaccagtatgggttttccatccctcactttttagtgcaatttggggggtataaaa Alignment from GeneWise agctatgacctaacagctgaagtttgacattcagtctatctctctcccagacctaaaaagaaggagctctactgttaggcccgaccagtatgggttttccatccctcactttttagtgcaatttggggggtataaaa #### Vegfb_ID1957_3 --> 2 - 0 Original Alignment tgGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGC-ATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG agaaatgaaaaggtggaaaggtttcagagttttctctctaccctaactagtgGTGCCATGGATAGATGTCTATGCACGTGCTGCATGCCAGCCAAGGGAGGTGGTGGCTCCACTGAGTCATGAAACTTATGGGCAATATAGTCAAACAGCTGGTGCCAAGTTGTGTTGTAACTGTGCAGCGCTGTAGTGGGTGCTGCCCTGATGATGGCCTGGAATGTGTGGCTGCAGAGCAACATCAAGTCCGAATGCAAgtaagggacaaatttgagtgcgagtacttggaagtatcagtctggtgtat Alignment from CESAR tgGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGC-ATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG agaaatgaaaaggtggaaaggtttcagagttttctctctaccctaactagtgGTGCCATGGATAGATGTCTATGCACGTGCTGCATGCCAGCCAAGGGAGGTGGTGGCTCCACTGAGTCATGAAACTTATGGGCAATATAGTCAAACAGCTGGTGCCAAGTTGTGTTGTAACTGTGCAGCGCTGTAGTGGGTGCTGCCCTGATGATGGCCTGGAATGTGTGGCTGCAGAGCAACATCAAGTCCGAATGCAAgtaagggacaaatttgagtgcgagtacttggaagtatcagtctggtgtat Alignment from Spaln_aa2Genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGC-ATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG agaaatgaaaaggtggaaaggtttcagagttttctctctaccctaactagTGGTGCCATGGATAGATGTCTATGCACGTGCTGCATGCCAGCCAAGGGAGGTGGTGGCTCCACTGAGTcATGAAACTTATGGGCAATATAGTCAAACAGCTGGTGCCAAGTTGTGTTGTAACTGTGCAGCGCTGTAGTGGGTGCTGCCCTGATGATGGCCTGGAATGTGTGGCTGCAGAGCAACATCAAGTCCGAATGCAAgtaagggacaaatttgagtgcgagtacttggaagtatcagtctggtgtat Alignment from Spaln_nt2Genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAG-CATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTG---ACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG agaaatgaaaaggtggaaaggtttcagagttttctctctaccctaactagTGGTGCCATGGATAGATGTCTATGCACGTGCTGCATGCCAGCCAAGGGAGGTGGTGGCTCCACTGAGTCATGAAACTTATGGGCAATATAGTCAAACAGCTGGTGCCAAGTTGTGTTGTAACTGTGCAGCGCTGTAGTGGGTGCTGCCCTGATGATGGCCTGGAATGTGTGGCTGCAGAGCAACATCAAGTCCGAATGCAAgtaagggacaaatttgagtgcgagtacttggaagtatcagtctggtgtat Alignment from Pairagon TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAG-CATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTG---TGTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG agaaatgaaaaggtggaaaggtttcagagttttctctctaccctaactagTGGTGCCATGGATAGATGTCTATGCACGTGCTGCATGCCAGCCAAGGGAGGTGGTGGCTCCACTGAGTCATGAAACTTATGGGCAATATAGTCAAACAGCTGGTGCCAAGTTGTGTTGTAACTGTGCAGCGCTGTAGTGGGTGCTGCCCTGATGATGGCCTGGAATGTGTGGCTGCAGAGCAACATCAAGTCCGAATGCAAgtaagggacaaatttgagtgcgagtacttggaagtatcagtctggtgtat Alignment from Exonerate_protein2genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGC-ATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG agaaatgaaaaggtggaaaggtttcagagttttctctctaccctaactagTGGTGCCATGGATAGATGTCTATGCACGTGCTGCATGCCAGCCAAGGGAGGTGGTGGCTCCACTGAGTCATGAAACTTATGGGCAATATAGTCAAACAGCTGGTGCCAAGTTGTGTTGTAACTGTGCAGCGCTGTAGTGGGTGCTGCCCTGATGATGGCCTGGAATGTGTGGCTGCAGAGCAACATCAAGTCCGAATGCAAgtaagggacaaatttgagtgcgagtacttggaagtatcagtctggtgtat Alignment from Exonerate_coding2genome TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTGAGC-ATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGT---GTGACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG agaaatgaaaaggtggaaaggtttcagagttttctctctaccctaactagTGGTGCCATGGATAGATGTCTATGCACGTGCTGCATGCCAGCCAAGGGAGGTGGTGGCTCCACTGAGTCATGAAACTTATGGGCAATATAGTCAAACAGCTGGTGCCAAGTTGTGTTGTAACTGTGCAGCGCTGTAGTGGGTGCTGCCCTGATGATGGCCTGGAATGTGTGGCTGCAGAGCAACATCAAGTCCGAATGCAAgtaagggacaaatttgagtgcgagtacttggaagtatcagtctggtgtat Alignment from GeneWise TGGTGCCATGGATAGACGTTTATGCACGTGCCACATGCCAGCCCAGGGAGGTGGTGGTGCCTCTG-AGCATGGAACTCATGGGCAATGTGGTCAAACAACTAGTGCCCAGCTGTGTG---ACTGTGCAGCGCTGTGGTGGCTGCTGCCCTGACGATGGCCTGGAATGTGTGCCCACTGGGCAACACCAAGTCCGAATGCAG agaaatgaaaaggtggaaaggtttcagagttttctctctaccctaactagTGGTGCCATGGATAGATGTCTATGCACGTGCTGCATGCCAGCCAAGGGAGGTGGTGGCTCCACTGAGTCATGAAACTTATGGGCAATATAGTCAAACAGCTGGTGCCAAGTTGTGTTGTAACTGTGCAGCGCTGTAGTGGGTGCTGCCCTGATGATGGCCTGGAATGTGTGGCTGCAGAGCAACATCAAGTCCGAATGCAAgtaagggacaaatttgagtgcgagtacttggaagtatcagtctggtgtat #### Vldlr_ID5810_9 --> 2 - 1 Original Alignment atATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACT-GGCGTGTGCAAGGCAGTAg aatgggatatagagaacaaggaattgagtgcttgtttccttcccatctagatATTGATGAATGCCAAAACCCAGGTATCTGCGGTCAGATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTACCAAATGGAACTGGCCACTCGGCGTGTGCAAGGCAATAggtaagaaagtaacccaccaatgctacaaagttctgagtgtagcttactgt Alignment from CESAR atATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACT-GGCGTGTGCAAGGCAGTAg aatgggatatagagaacaaggaattgagtgcttgtttccttcccatctagatATTGATGAATGCCAAAACCCAGGTATCTGCGGTCAGATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTACCAAATGGAACTGGCCACTCGGCGTGTGCAAGGCAATAggtaagaaagtaacccaccaatgctacaaagttctgagtgtagcttactgt Alignment from Spaln_aa2Genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACT-GGCGTGTGCAAGGCAGTAG aatgggatatagagaacaaggaattgagtgcttgtttccttcccatctagATATTGATGAATGCCAAAACCCAGGTATCTGCGGTCAGATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTACCAAATGGAACTGGCCACTcGGCGTGTGCAAGGCAATAGgtaagaaagtaacccaccaatgctacaaagttctgagtgtagcttactgt Alignment from Spaln_nt2Genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACT-GGCGTGTGCAAGGCAGTAG aatgggatatagagaacaaggaattgagtgcttgtttccttcccatctagATATTGATGAATGCCAAAACCCAGGTATCTGCGGTCAGATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTACCAAATGGAACTGGCCACTCGGCGTGTGCAAGGCAATAGgtaagaaagtaacccaccaatgctacaaagttctgagtgtagcttactgt Alignment from Pairagon ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACT-GGCGTGTGCAAGGCAGTAG aatgggatatagagaacaaggaattgagtgcttgtttccttcccatctagATATTGATGAATGCCAAAACCCAGGTATCTGCGGTCAGATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTACCAAATGGAACTGGCCACTCGGCGTGTGCAAGGCAATAGgtaagaaagtaacccaccaatgctacaaagttctgagtgtagcttactgt Alignment from Exonerate_protein2genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACT-GGCGTGTGCAAGGCAGTAG aatgggatatagagaacaaggaattgagtgcttgtttccttcccatctagATATTGATGAATGCCAAAACCCAGGTATCTGCGGTCAGATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTACCAAATGGAACTGGCCACTCGGCGTGTGCAAGGCAATAGgtaagaaagtaacccaccaatgctacaaagttctgagtgtagcttactgt Alignment from Exonerate_coding2genome ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACT-GGCGTGTGCAAGGCAGTAG aatgggatatagagaacaaggaattgagtgcttgtttccttcccatctagATATTGATGAATGCCAAAACCCAGGTATCTGCGGTCAGATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTACCAAATGGAACTGGCCACTCGGCGTGTGCAAGGCAATAGgtaagaaagtaacccaccaatgctacaaagttctgagtgtagcttactgt Alignment from GeneWise ATATTGATGAATGCCAAAACCCGGGGATCTGCAGTCAAATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCGTGGCTATCAAATGGATCTTGCCACTGGC- aatgggatatagagaacaaggaattgagtgcttgtttccttcccatctagATATTGATGAATGCCAAAACCCAGGTATCTGCGGTCAGATTTGTATCAACTTAAAAGGCGGTTACAAGTGTGAATGTAGTCATGGCTACCAAATGGAACTGGCCACTCGGCgtgtgcaaggcaataggtaagaaagtaacccaccaatgctacaaagttctgagtgtagcttactgt #### Vps13a_ID4057_66 --> 0 - 1 Original Alignment GGTTTTGTAAGTGGC-ATTACAGGGATTGTTACAAAGCCAATTAAAg aaaagctgtcctgtcataattctataattgctgggatgtggtttctgcagGGTTTTGTAAGTGGTCATTACCGGCATTGTTTCAGAGCCAATAAAAggtatctatcaccttgcctggtatatatttcacatgtgtcattctcatttg Alignment from CESAR GGTTTTGTAAGTGGC-ATTACAGGGATTGTTACAAAGCCAATTAAAg aaaagctgtcctgtcataattctataattgctgggatgtggtttctgcagGGTTTTGTAAGTGGTCATTACCGGCATTGTTTCAGAGCCAATAAAAggtatctatcaccttgcctggtatatatttcacatgtgtcattctcatttg Alignment from Spaln_aa2Genome GGTTTTGTAAGTGGC-ATTACAGGGATTGTTACAAAGCCAATTAAAG aaaagctgtcctgtcataattctataattgctgggatgtggtttctgcagGGTTTTGTAAGTGGTcATTACCGGCATTGTTTCAGAGCCAATAAAAGgtatctatcaccttgcctggtatatatttcacatgtgtcattctcatttg Alignment from Spaln_nt2Genome GGTTTTGTAAGTGG-CATTACAGGGATTGTTACAAAGCCAATTAAAG aaaagctgtcctgtcataattctataattgctgggatgtggtttctgcagGGTTTTGTAAGTGGTCATTACCGGCATTGTTTCAGAGCCAATAAAAGgtatctatcaccttgcctggtatatatttcacatgtgtcattctcatttg Alignment from Pairagon GGTTTTGTAAGTGG-CATTACAGGGATTGTTACAAAGCCAATTAAAG aaaagctgtcctgtcataattctataattgctgggatgtggtttctgcagGGTTTTGTAAGTGGTCATTACCGGCATTGTTTCAGAGCCAATAAAAGgtatctatcaccttgcctggtatatatttcacatgtgtcattctcatttg Alignment from Exonerate_protein2genome GGTTTTGTAAGTGGC-ATTACAGGGATTGTTACAAAGCCAATTAAAG aaaagctgtcctgtcataattctataattgctgggatgtggtttctgcagGGTTTTGTAAGTGGTCATTACCGGCATTGTTTCAGAGCCAATAAAAGgtatctatcaccttgcctggtatatatttcacatgtgtcattctcatttg Alignment from Exonerate_coding2genome GGTTTTGTAAGTG aaaagctgtcctgtcataattctataattgctgggatgtggtttctgcagggttttgtaagtggtcattaccggcattgtttcagagccaataaaaggtatctatcaccttgcctggtatatatttcacatgtgTCATTCTCATTTG Alignment from GeneWise GGTTTTGTAAGTGGC-ATTACAGGGATTGTTACAAAGCCAATTAAAG aaaagctgtcctgtcataattctataattgctgggatgtggtttctgcagGGTTTTGTAAGTGGTCATTACCGGCATTGTTTCAGAGCCAATAAAAGgtatctatcaccttgcctggtatatatttcacatgtgtcattctcatttg #### Vps13a_ID4074_49 --> 0 - 0 Original Alignment GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCC-ATTAGATGCAAAGGTCTGAAAATGGAATACCAA atacaaatattttattccttatttgtagtctccttcactgtctgccatagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGACCAATTTTCAATTGATACTGTTGGTAGTCATGGAGCCCATTAGATGTAAAGGTCTGAAAATGGAATACCAAgtgcattggtcctgtgccttaaagaccttctagatatactgtagcgaccg Alignment from CESAR GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCC-ATTAGATGCAAAGGTCTGAAAATGGAATACCAA atacaaatattttattccttatttgtagtctccttcactgtctgccatagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGACCAATTTTCAATTGATACTGTTGGTAGTCATGGAGCCCATTAGATGTAAAGGTCTGAAAATGGAATACCAAgtgcattggtcctgtgccttaaagaccttctagatatactgtagcgaccg Alignment from Spaln_aa2Genome GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCC-ATTAGATGCAAAGGTCTGAAAATGGAATACCAA atacaaatattttattccttatttgtagtctccttcactgtctgccatagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGACCAATTTTCAATTGATACTGTTGGTAGTCATGGAGCCcATTAGATGTAAAGGTCTGAAAATGGAATACCAAgtgcattggtcctgtgccttaaagaccttctagatatactgtagcgaccg Alignment from Spaln_nt2Genome GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAG-CCATTAGATGCAAAGGTCTGAAAATGGAATACCAA atacaaatattttattccttatttgtagtctccttcactgtctgccatagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGACCAATTTTCAATTGATACTGTTGGTAGTCATGGAGCCCATTAGATGTAAAGGTCTGAAAATGGAATACCAAgtgcattggtcctgtgccttaaagaccttctagatatactgtagcgaccg Alignment from Pairagon GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAG-CCATTAGATGCAAAGGTCTGAAAATGGAATACCAA atacaaatattttattccttatttgtagtctccttcactgtctgccatagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGACCAATTTTCAATTGATACTGTTGGTAGTCATGGAGCCCATTAGATGTAAAGGTCTGAAAATGGAATACCAAgtgcattggtcctgtgccttaaagaccttctagatatactgtagcgaccg Alignment from Exonerate_protein2genome GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCC-ATTAGATGCAAAGGTCTGAAAATGGAATACCAA atacaaatattttattccttatttgtagtctccttcactgtctgccatagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGACCAATTTTCAATTGATACTGTTGGTAGTCATGGAGCCCATTAGATGTAAAGGTCTGAAAATGGAATACCAAgtgcattggtcctgtgccttaaagaccttctagatatactgtagcgaccg Alignment from Exonerate_coding2genome GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGAGCC-ATTAGATGCAAAGGTCTGAAAATGGAATACCAA atacaaatattttattccttatttgtagtctccttcactgtctgccatagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGACCAATTTTCAATTGATACTGTTGGTAGTCATGGAGCCCATTAGATGTAAAGGTCTGAAAATGGAATACCAAgtgcattggtcctgtgccttaaagaccttctagatatactgtagcgaccg Alignment from GeneWise GTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGATCAGTTTTCAATTGATACTGTTGGTAGTCATGGA-GCCATTAGATGCAAAGGTCTGAAAATGGAATACCAA atacaaatattttattccttatttgtagtctccttcactgtctgccatagGTTCAGCTTATGGTAACTGATAGTGAGCTTTCAGACCAATTTTCAATTGATACTGTTGGTAGTCATGGAGCCCATTAGATGTAAAGGTCTGAAAATGGAATACCAAgtgcattggtcctgtgccttaaagaccttctagatatactgtagcgaccg #### Vps13a_ID4093_30 --> 2 - 1 Original Alignment ctTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGT-CTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAg gttatctgttagtaaatctcctgataccaactgtttctctttctttccagctTTAAAGCTACCTATAAATGAAGACATTATCACATTGCAGCTCGTGGCAGAACTATCATGTCTTAAAAATTCTCATCCAGGATCAGAAACAGAACGTATCAGAAATCAAAATTGAAggtgaacatatctatttcctgtatttaggattaactaaattcataaggcag Alignment from CESAR ctTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTA-CAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAg gttatctgttagtaaatctcctgataccaactgtttctctttctttccagctTTAAAGCTACCTATAAATGAAGACATTATCACATTGCAGCTCGTGGCAGAACTATCATGTCTTAAAAATTCTCATCCAGGATCAGAAACAGAACGTATCAGAAATCAAAATTGAAggtgaacatatctatttcctgtatttaggattaactaaattcataaggcag Alignment from Spaln_aa2Genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTA-CAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gttatctgttagtaaatctcctgataccaactgtttctctttctttccagCTTTAAAGCTACCTATAAATGAAGACATTATCACATTGCAGCTCGTGGCAGAACTATCATGTCTTaAAAATTCTCATCCAGGATCAGAAACAGAACGTATCAGAAATCAAAATTGAAGgtgaacatatctatttcctgtatttaggattaactaaattcataaggcag Alignment from Spaln_nt2Genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCT-ACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gttatctgttagtaaatctcctgataccaactgtttctctttctttccagCTTTAAAGCTACCTATAAATGAAGACATTATCACATTGCAGCTCGTGGCAGAACTATCATGTCTTAAAAATTCTCATCCAGGATCAGAAACAGAACGTATCAGAAATCAAAATTGAAGgtgaacatatctatttcctgtatttaggattaactaaattcataaggcag Alignment from Pairagon CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTC-TACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gttatctgttagtaaatctcctgataccaactgtttctctttctttccagCTTTAAAGCTACCTATAAATGAAGACATTATCACATTGCAGCTCGTGGCAGAACTATCATGTCTTAAAAATTCTCATCCAGGATCAGAAACAGAACGTATCAGAAATCAAAATTGAAGgtgaacatatctatttcctgtatttaggattaactaaattcataaggcag Alignment from Exonerate_protein2genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGT-CTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gttatctgttagtaaatctcctgataccaactgtttctctttctttccagCTTTAAAGCTACCTATAAATGAAGACATTATCACATTGCAGCTCGTGGCAGAACTATCATGTCTTAAAAATTCTCATCCAGGATCAGAAACAGAACGTATCAGAAATCAAAATTGAAGgtgaacatatctatttcctgtatttaggattaactaaattcataaggcag Alignment from Exonerate_coding2genome CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGT-CTACAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gttatctgttagtaaatctcctgataccaactgtttctctttctttccagCTTTAAAGCTACCTATAAATGAAGACATTATCACATTGCAGCTCGTGGCAGAACTATCATGTCTTAAAAATTCTCATCCAGGATCAGAAACAGAACGTATCAGAAATCAAAATTGAAGgtgaacatatctatttcctgtatttaggattaactaaattcataaggcag Alignment from GeneWise CTTTAAAGCTACCCACGAATGAAGATATTATTACCTTGCAGCTTTTGGCAGAATTATCTTGTCTA-CAGATTTTTATTCAGGATCAGAAACAAAACATTTCTGAAATTAAAATTGAAG gttatctgttagtaaatctcctgataccaactgtttctctttctttccagCTTTAAAGCTACCTATAAATGAAGACATTATCACATTGCAGCTCGTGGCAGAACTATCATGTCTTAAAAATTCTCATCCAGGATCAGAAACAGAACGTATCAGAAATCAAAATTGAAGgtgaacatatctatttcctgtatttaggattaactaaattcataaggcag #### Vps13a_ID4119_4 --> 2 - 1 Original Alignment gtAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACT-CAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTa tgagtccctactccctgcataaaaacctcacttcctttacccacccataggtAGCCTTAAACTTAAAATCCCATGGAAAAACCTTTATACTCCAACCAGTTGGAGCAGTTTTGGAAGAAATCTTTTTACTCATAGTACCTTCTTCTagtaagccacttaaagttggtcatatagcttattcccaggtgtaaagcttg Alignment from CESAR gtAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACT-CAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTa tgagtccctactccctgcataaaaacctcacttcctttacccacccataggtAGCCTTAAACTTAAAATCCCATGGAAAAACCTTTATACTCCAACCAGTTGGAGCAGTTTTGGAAGAAATCTTTTTACTCATAGTACCTTCTTCTagtaagccacttaaagttggtcatatagcttattcccaggtgtaaagcttg Alignment from Spaln_aa2Genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACT-CAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA tgagtccctactccctgcataaaaacctcacttcctttacccacccatagGTAGCCTTAAACTTAAAATCCCATGGAAAAACCTTTATACTcCAACCAGTTGGAGCAGTTTTGGAAGAAATCTTTTTACTCATAGTACCTTCTTCTAgtaagccacttaaagttggtcatatagcttattcccaggtgtaaagcttg Alignment from Spaln_nt2Genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACT-CAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA tgagtccctactccctgcataaaaacctcacttcctttacccacccatagGTAGCCTTAAACTTAAAATCCCATGGAAAAACCTTTATACTCCAACCAGTTGGAGCAGTTTTGGAAGAAATCTTTTTACTCATAGTACCTTCTTCTAgtaagccacttaaagttggtcatatagcttattcccaggtgtaaagcttg Alignment from Pairagon GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACT-CAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA tgagtccctactccctgcataaaaacctcacttcctttacccacccatagGTAGCCTTAAACTTAAAATCCCATGGAAAAACCTTTATACTCCAACCAGTTGGAGCAGTTTTGGAAGAAATCTTTTTACTCATAGTACCTTCTTCTAgtaagccacttaaagttggtcatatagcttattcccaggtgtaaagcttg Alignment from Exonerate_protein2genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACT-CAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA tgagtccctactccctgcataaaaacctcacttcctttacccacccatagGTAGCCTTAAACTTAAAATCCCATGGAAAAACCTTTATACTCCAACCAGTTGGAGCAGTTTTGGAAGAAATCTTTTTACTCATAGTACCTTCTTCTAgtaagccacttaaagttggtcatatagcttattcccaggtgtaaagcttg Alignment from Exonerate_coding2genome GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTATACT-CAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA tgagtccctactccctgcataaaaacctcacttcctttacccacccatagGTAGCCTTAAACTTAAAATCCCATGGAAAAACCTTTATACTCCAACCAGTTGGAGCAGTTTTGGAAGAAATCTTTTTACTCATAGTACCTTCTTCTAgtaagccacttaaagttggtcatatagcttattcccaggtgtaaagcttg Alignment from GeneWise GTAGTCTTAAACTTAAAATTCCATGGAAAAACCTTTAT-ACTCAACCAGTTGAAGCTGTTTTGGAAGAAATTTTTTTACTCATAGTGCCTTCTTCTA tgagtccctactccctgcataaaaacctcacttcctttacccacccatagGTAGCCTTAAACTTAAAATCCCATGGAAAAACCTTTATACTCCAACCAGTTGGAGCAGTTTTGGAAGAAATCTTTTTACTCATAGTACCTTCTTCTAgtaagccacttaaagttggtcatatagcttattcccaggtgtaaagcttg #### Vps37c_ID2983_3 --> 2 - 0 Original Alignment agAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATC-GAGGAGGAGTCTGAG taattaaggcaatgtgtttgaaagattattcttttttgatgtaattttagagAAATTTTCCTCAGCACTGCAGCCTGGGACCTTATTGGACCTCCTGCAGATTGAAGGCATGAAGATTCGAGGAGGAGTCAGAGgtaaggtaagcattactcctaatccattaaacagtggtgtctgaatgagg Alignment from CESAR agAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATC-GAGGAGGAGTCTGAG taattaaggcaatgtgtttgaaagattattcttttttgatgtaattttagagAAATTTTCCTCAGCACTGCAGCCTGGGACCTTATTGGACCTCCTGCAGATTGAAGGCATGAAGATTCGAGGAGGAGTCAGAGgtaaggtaagcattactcctaatccattaaacagtggtgtctgaatgagg Alignment from Spaln_aa2Genome AGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAGGCCATG taattaaggcaatgtgtttgaaagattattcttttttgatgtaattttagAGAAATTTTCCTCAGCACTGCAGCCTGGGACCTTATTGGACCTCCTGCAGATTGAAGGCATGAAGATTCGAGGAGGAGTCAGAGGTAAGgtaagcattactcctaatccattaaacagtggtgtctgaatgagg Alignment from Spaln_nt2Genome AGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGAT-CGAGGAGGAGTCTGAG taattaaggcaatgtgtttgaaagattattcttttttgatgtaattttagAGAAATTTTCCTCAGCACTGCAGCCTGGGACCTTATTGGACCTCCTGCAGATTGAAGGCATGAAGATTCGAGGAGGAGTCAGAGgtaaggtaagcattactcctaatccattaaacagtggtgtctgaatgagg Alignment from Pairagon AGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGA-TCGAGGAGGAGTCTGAG taattaaggcaatgtgtttgaaagattattcttttttgatgtaattttagAGAAATTTTCCTCAGCACTGCAGCCTGGGACCTTATTGGACCTCCTGCAGATTGAAGGCATGAAGATTCGAGGAGGAGTCAGAGgtaaggtaagcattactcctaatccattaaacagtggtgtctgaatgagg Alignment from Exonerate_protein2genome AGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAGGCCATG taattaaggcaatgtgtttgaaagattattcttttttgatgtaattttagAGAAATTTTCCTCAGCACTGCAGCCTGGGACCTTATTGGACCTCCTGCAGATTGAAGGCATGAAGATTCGAGGAGGAGTCAGAGGTAAGgtaagcattactcctaatccattaaacagtggtgtctgaatgagg Alignment from Exonerate_coding2genome AGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAGGCCATG taattaaggcaatgtgtttgaaagattattcttttttgatgtaattttagAGAAATTTTCCTCAGCACTGCAGCCTGGGACCTTATTGGACCTCCTGCAGATTGAAGGCATGAAGATTCGAGGAGGAGTCAGAGGTAAGgtaagcattactcctaatccattaaacagtggtgtctgaatgagg Alignment from GeneWise AGAAATTTTCCTCGGCACTGCAGCCTGGGACCTTGTTGGACCTTCTGCAGATCGAAGGCATGAAGATCGAGGAGGAGTCTGAGGCCATG taattaaggcaatgtgtttgaaagattattcttttttgatgtaattttagAGAAATTTTCCTCAGCACTGCAGCCTGGGACCTTATTGGACCTCCTGCAGATTGAAGGCATGAAGATTCGAGGAGGAGTCAGAGGTAAGgtaagcattactcctaatccattaaacagtggtgtctgaatgagg #### Vwce_ID2948_3 --> 2 - 1 Original Alignment ccCTCTGCTCCTTTGGC-TGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAg tcctcatttgtctgtgcaactaagatgtatttttctgtctggctatttagccCTCTGTTCCTTTGGCCTGTGGAAGTGGCATCTGCATAACTCCTAATGTTTGCTCATGCCAGGATGGAGAACAAGGCGCCACGTGCCCGggtaaatggtgtgaaataaggcagaacatagtatggagatgatgtttctgg Alignment from CESAR ccCTCTGCTCCTTTGGC-TGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAg tcctcatttgtctgtgcaactaagatgtatttttctgtctggctatttagccCTCTGTTCCTTTGGCCTGTGGAAGTGGCATCTGCATAACTCCTAATGTTTGCTCATGCCAGGATGGAGAACAAGGCGCCACGTGCCCGggtaaatggtgtgaaataaggcagaacatagtatggagatgatgtttctgg Alignment from Spaln_aa2Genome CTGCCCCTCTGCTCCTTTGGC-TGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG tcatttgtctgtgcaactaagatgtatttttctgtctggctattta gCCCTCTGTTCCTTTGGCcTGTGGAAGTGGCATCTGCATAACTCCTAATGTTTGCTCATGCCAGGATGGAGAACAAGGCGCCACGTGCCCGGgtaaatggtgtgaaataaggcagaacatagtatggagatgatgtttctgg Alignment from Spaln_nt2Genome TGCCCCTCTGCTCCTTTGGC-TGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG tcctcatttgtctgtgcaactaagatgtatttttctgtctggctatttag---CCCTCTGTTCCTTTGGCCTGTGGAAGTGGCATCTGCATAACTCCTAATGTTTGCTCATGCCAGGATGGAGAACAAGGCGCCACGTGCCCGGgtaaatggtgtgaaataaggcagaacatagtatggagatgatgtttctgg Alignment from Pairagon TGCCCCTCTGCTCCTTTGG-CTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG tcctcatttgtctgtgcaactaagatgtatttttctgtctggctatttag---CCCTCTGTTCCTTTGGCCTGTGGAAGTGGCATCTGCATAACTCCTAATGTTTGCTCATGCCAGGATGGAGAACAAGGCGCCACGTGCCCGGgtaaatggtgtgaaataaggcagaacatagtatggagatgatgtttctgg Alignment from Exonerate_protein2genome CCCTCTGCTCCTTTGGC-TGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG tcctcatttgtctgtgcaactaagatgtatttttctgtctggctatttagCCCTCTGTTCCTTTGGCCTGTGGAAGTGGCATCTGCATAACTCCTAATGTTTGCTCATGCCAGGATGGAGAACAAGGCGCCACGTGCCCGGgtaaatggtgtgaaataaggcagaacatagtatggagatgatgtttctgg Alignment from Exonerate_coding2genome No alignment No alignment Alignment from GeneWise TGCCCCTCTGCTCCTTT-GGCTGTGGGAGTGGCATCTGCATCGCTCCCAATGTCTGTTCCTGCCAGGATGGAGAGCAAGGGGCCACTTGCCCAG tcctcatttgtctgtgcaactaagatgtatttttctgtctggctatttagCC---CTCTGTTCCTTTGGCCTGTGGAAGTGGCATCTGCATAACTCCTAATGTTTGCTCATGCCAGGATGGAGAACAAGGCGCCACGTGCCCGGgtaaatggtgtgaaataaggcagaacatagtatggagatgatgtttctgg #### Vwce_ID2964_18 --> 2 - 0 Original Alignment acTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGAT-GATGAGCCCTGTACCCGGTGCATCTGCCAG ccaatgaacacagatgaatggtggccatgtaattaattacctttccctagacTGTAACTTTGAAGGGAGAAAGGTAGTCAATGGTCAGGTTTTCACCCTGGATCGATGAGCCCTGTACCCGGTGCATCTGCCAGgtcattaggttagagaacctggggctatcagttgcataaaggtcctcatg Alignment from CESAR acTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGAT-GATGAGCCCTGTACCCGGTGCATCTGCCAG ccaatgaacacagatgaatggtggccatgtaattaattacctttccctagacTGTAACTTTGAAGGGAGAAAGGTAGTCAATGGTCAGGTTTTCACCCTGGATCGATGAGCCCTGTACCCGGTGCATCTGCCAGgtcattaggttagagaacctggggctatcagttgcataaaggtcctcatg Alignment from Spaln_aa2Genome ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGAT-GATGAGCCCTGTACCCGGTGCATCTGCCAG ccaatgaacacagatgaatggtggccatgtaattaattacctttccctagACTGTAACTTTGAAGGGAGAAAGGTAGTCAATGGTCAGGTTTTCACCCTGGATcGATGAGCCCTGTACCCGGTGCATCTGCCAGgtcattaggttagagaacctggggctatcagttgcataaaggtcctcatg Alignment from Spaln_nt2Genome ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGAT-GATGAGCCCTGTACCCGGTGCATCTGCCAG ccaatgaacacagatgaatggtggccatgtaattaattacctttccctagACTGTAACTTTGAAGGGAGAAAGGTAGTCAATGGTCAGGTTTTCACCCTGGATCGATGAGCCCTGTACCCGGTGCATCTGCCAGgtcattaggttagagaacctggggctatcagttgcataaaggtcctcatg Alignment from Pairagon ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGAT-GATGAGCCCTGTACCCGGTGCATCTGCCAG ccaatgaacacagatgaatggtggccatgtaattaattacctttccctagACTGTAACTTTGAAGGGAGAAAGGTAGTCAATGGTCAGGTTTTCACCCTGGATCGATGAGCCCTGTACCCGGTGCATCTGCCAGgtcattaggttagagaacctggggctatcagttgcataaaggtcctcatg Alignment from Exonerate_protein2genome ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGAT-GATGAGCCCTGTACCCGGTGCATCTGCCAG ccaatgaacacagatgaatggtggccatgtaattaattacctttccctagACTGTAACTTTGAAGGGAGAAAGGTAGTCAATGGTCAGGTTTTCACCCTGGATCGATGAGCCCTGTACCCGGTGCATCTGCCAGgtcattaggttagagaacctggggctatcagttgcataaaggtcctcatg Alignment from Exonerate_coding2genome ccaatgaacacagatgaatggtggccatgtaattaattacctttccctagactgtaactttgaagggagaaaggtagtcaatggtcaggttttcaccctggatcgatgagccctgtacccggtgcatctgccaggtcattaggttagagaacctggggctatcagttgcataaaggtcctcatg Alignment from GeneWise ACTGTAACTTCGAAGGGAGAAAGGTAGTGAATGGTCAGGTGTTCACCTTGGAT-GATGAGCCCTGTACCCGGTGCATCTGCCAG ccaatgaacacagatgaatggtggccatgtaattaattacctttccctagACTGTAACTTTGAAGGGAGAAAGGTAGTCAATGGTCAGGTTTTCACCCTGGATCGATGAGCCCTGTACCCGGTGCATCTGCCAGgtcattaggttagagaacctggggctatcagttgcataaaggtcctcatg #### Wdr74_ID2314_4 --> 1 - 0 Original Alignment cACCCTTATCACATGTGTG-GATTCTGGGATCCTCAGAGTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA ctaaaaaccatgttttaaccaacatgccatatctttgctacatttgttagaACTCTTATTACATGTGTACGATTCTGGGATCCTGAGAGTATGGTGTGAGAATGATAAAGAGGCATCTTCTGACCCAgtgagtttgttctcccgtcacaggcggcttgggtaagggtctaatgggca Alignment from CESAR cACCCTTATCACATGTGTG-GATTCTGGGATCCTCAGAGTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA ctaaaaaccatgttttaaccaacatgccatatctttgctacatttgttagaACTCTTATTACATGTGTACGATTCTGGGATCCTGAGAGTATGGTGTGAGAATGATAAAGAGGCATCTTCTGACCCAgtgagtttgttctcccgtcacaggcggcttgggtaagggtctaatgggca Alignment from Spaln_aa2Genome CACCCTTATCACATGTGTG-GATTCTGGGATCCTCAGAGTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA ctaaaaaccatgttttaaccaacatgccatatctttgctacatttgttagAACTCTTATTACATGTGTAcGATTCTGGGATCCTGAGAGTATGGTGTGAGAATGATAAAGAGGCATCTTCTGACCCAgtgagtttgttctcccgtcacaggcggcttgggtaagggtctaatgggca Alignment from Spaln_nt2Genome CACCCTTATCACATGTGTG-GATTCTGGGATCCTCAGAGTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA ctaaaaaccatgttttaaccaacatgccatatctttgctacatttgttagAACTCTTATTACATGTGTACGATTCTGGGATCCTGAGAGTATGGTGTGAGAATGATAAAGAGGCATCTTCTGACCCAgtgagtttgttctcccgtcacaggcggcttgggtaagggtctaatgggca Alignment from Pairagon CACCCTTATCACATGTGTG-GATTCTGGGATCCTCAGAGTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA ctaaaaaccatgttttaaccaacatgccatatctttgctacatttgttagAACTCTTATTACATGTGTACGATTCTGGGATCCTGAGAGTATGGTGTGAGAATGATAAAGAGGCATCTTCTGACCCAgtgagtttgttctcccgtcacaggcggcttgggtaagggtctaatgggca Alignment from Exonerate_protein2genome CACCCTTATCACATGTGTG-GATTCTGGGATCCTCAGAGTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA ctaaaaaccatgttttaaccaacatgccatatctttgctacatttgttagAACTCTTATTACATGTGTACGATTCTGGGATCCTGAGAGTATGGTGTGAGAATGATAAAGAGGCATCTTCTGACCCAgtgagtttgttctcccgtcacaggcggcttgggtaagggtctaatgggca Alignment from Exonerate_coding2genome CACCCTTATCACATGTGTG-GATTCTGGGATCCTCAGAGTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA ctaaaaaccatgttttaaccaacatgccatatctttgctacatttgttagAACTCTTATTACATGTGTACGATTCTGGGATCCTGAGAGTATGGTGTGAGAATGATAAAGAGGCATCTTCTGACCCAgtgagtttgttctcccgtcacaggcggcttgggtaagggtctaatgggca Alignment from GeneWise CACCCTTATCACATGT-GTGGATTCTGGGATCCTCAGAGTCTGGTGTGAAAATGACAAAGAGGCGTCCTCTGACCCA ctaaaaaccatgttttaaccaacatgccatatctttgctacatttgttagAACTCTTATTACATGTGTACGATTCTGGGATCCTGAGAGTATGGTGTGAGAATGATAAAGAGGCATCTTCTGACCCAgtgagtttgttctcccgtcacaggcggcttgggtaagggtctaatgggca #### Wdr74_ID2318_8 --> 1 - 1 Original Alignment tTCCGTCATCGTAGGG-AACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAg aaatgggatccaggattcacactgatccgagtgttatccttcttttccagtTCTGTCATTGTAGGGCAACACTCATGGGCAACTGGCAGAAATTGACTTTCGGCAAggtaagtgcaccatagacttcttgagaaggaaagtagggggtactactgac Alignment from CESAR tTCCGTCATCGTAGGG-AACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAg aaatgggatccaggattcacactgatccgagtgttatccttcttttccagtTCTGTCATTGTAGGGCAACACTCATGGGCAACTGGCAGAAATTGACTTTCGGCAAggtaagtgcaccatagacttcttgagaaggaaagtagggggtactactgac Alignment from Spaln_aa2Genome TTCCGTCATCGTA-GGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG aaatgggatccaggattcacactgatccgagtgttatccttcttttccagTTCTGTCATTGTAgGGCAACACTCATGGGCAACTGGCAGAAATTGACTTTCGGCAAGgtaagtgcaccatagacttcttgagaaggaaagtagggggtactactgac Alignment from Spaln_nt2Genome TTCCGTCATCGTAGGG-AACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG aaatgggatccaggattcacactgatccgagtgttatccttcttttccagTTCTGTCATTGTAGGGCAACACTCATGGGCAACTGGCAGAAATTGACTTTCGGCAAGgtaagtgcaccatagacttcttgagaaggaaagtagggggtactactgac Alignment from Pairagon TTCCGTCATCGTAGGG-AACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG aaatgggatccaggattcacactgatccgagtgttatccttcttttccagTTCTGTCATTGTAGGGCAACACTCATGGGCAACTGGCAGAAATTGACTTTCGGCAAGgtaagtgcaccatagacttcttgagaaggaaagtagggggtactactgac Alignment from Exonerate_protein2genome TTCCGTCATCGTA-GGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG aaatgggatccaggattcacactgatccgagtgttatccttcttttccagTTCTGTCATTGTAGGGCAACACTCATGGGCAACTGGCAGAAATTGACTTTCGGCAAGgtaagtgcaccatagacttcttgagaaggaaagtagggggtactactgac Alignment from Exonerate_coding2genome TTCCGTCATCGTA-GGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAG aaatgggatccaggattcacactgatccgagtgttatccttcttttccagTTCTGTCATTGTAGGGCAACACTCATGGGCAACTGGCAGAAATTGACTTTCGGCAAGgtaagtgcaccatagacttcttgagaaggaaagtagggggtactactgac Alignment from GeneWise TTCCGTCATC-GTAGGGAACACTCATGGGCAGCTGGCAGAAATTGATTTTCGGCAAGGGCG aaatgggatccaggattcacactgatccgagtgttatccttcttttccagTTCTGTCATTGTAGGGCAACACTCATGGGCAACTGGCAGAAATTGACTTTCGGCAAGGTAAgtgcaccatagacttcttgagaaggaaagtagggggtactactgac #### Wnt8b_ID9022_5 --> 2 - 0 Original Alignment ggGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCC-CGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gaacacaggatttccccagcttttatacttgacttttattttcctcttagggGGGCAAGGCTGGCTGTGGGGTGGATGCAGTGACAATGCAGGCTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATGTTCTCAAGACAGGGCAAGATGCCCCGAGCAGCTATAAACTTGCACAACAATGAAGCCGGTCGCAAGgtgagtcccatagtggttgatgggtgcatcatcagtcttgttaatttagg Alignment from CESAR ggGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCC-CGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gaacacaggatttccccagcttttatacttgacttttattttcctcttagggGGGCAAGGCTGGCTGTGGGGTGGATGCAGTGACAATGCAGGCTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATGTTCTCAAGACAGGGCAAGATGCCCCGAGCAGCTATAAACTTGCACAACAATGAAGCCGGTCGCAAGgtgagtcccatagtggttgatgggtgcatcatcagtcttgttaatttagg Alignment from Spaln_aa2Genome GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCC-CGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gaacacaggatttccccagcttttatacttgacttttattttcctcttagGGGGGCAAGGCTGGCTGTGGGGTGGATGCAGTGACAATGCAGGCTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATGTTCTCAAGACAGGGCAAGATGCCcCGAGCAGCTATAAACTTGCACAACAATGAAGCCGGTCGCAAGgtgagtcccatagtggttgatgggtgcatcatcagtcttgttaatttagg Alignment from Spaln_nt2Genome GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCCCGG-GCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gaacacaggatttccccagcttttatacttgacttttattttcctcttagGGGGGCAAGGCTGGCTGTGGGGTGGATGCAGTGACAATGCAGGCTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATGTTCTCAAGACAGGGCAAGATGCCCCGAGCAGCTATAAACTTGCACAACAATGAAGCCGGTCGCAAGgtgagtcccatagtggttgatgggtgcatcatcagtcttgttaatttagg Alignment from Pairagon GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATG-CCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gaacacaggatttccccagcttttatacttgacttttattttcctcttagGGGGGCAAGGCTGGCTGTGGGGTGGATGCAGTGACAATGCAGGCTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATGTTCTCAAGACAGGGCAAGATGCCCCGAGCAGCTATAAACTTGCACAACAATGAAGCCGGTCGCAAGgtgagtcccatagtggttgatgggtgcatcatcagtcttgttaatttagg Alignment from Exonerate_protein2genome GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCC-CGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gaacacaggatttccccagcttttatacttgacttttattttcctcttagGGGGGCAAGGCTGGCTGTGGGGTGGATGCAGTGACAATGCAGGCTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATGTTCTCAAGACAGGGCAAGATGCCCCGAGCAGCTATAAACTTGCACAACAATGAAGCCGGTCGCAAGgtgagtcccatagtggttgatgggtgcatcatcagtcttgttaatttagg Alignment from Exonerate_coding2genome GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGATGCC-CGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gaacacaggatttccccagcttttatacttgacttttattttcctcttagGGGGGCAAGGCTGGCTGTGGGGTGGATGCAGTGACAATGCAGGCTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATGTTCTCAAGACAGGGCAAGATGCCCCGAGCAGCTATAAACTTGCACAACAATGAAGCCGGTCGCAAGgtgagtcccatagtggttgatgggtgcatcatcagtcttgttaatttagg Alignment from GeneWise GGGGCCAAGGTTGGCTCTGGGGAGGCTGCAGTGACAACGTGGGCTTCGGAGAGGCAATTTCCAAGCAGTTTGTGGATGCCCTCGAGACAGGACAAGAT-GCCCGGGCAGCCATGAATCTGCACAACAATGAGGCTGGCCGCAAG gaacacaggatttccccagcttttatacttgacttttattttcctcttagGGGGGCAAGGCTGGCTGTGGGGTGGATGCAGTGACAATGCAGGCTTTGGAGAGGCAATTTCCAAGCAATTTGTTGATGTTCTCAAGACAGGGCAAGATGCCCCGAGCAGCTATAAACTTGCACAACAATGAAGCCGGTCGCAAGgtgagtcccatagtggttgatgggtgcatcatcagtcttgttaatttagg #### Yif1a_ID830_2 --> 2 - 0 Original Alignment gtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAA-GGGAAGGACATAGTGCACAAAGAG CTGCACCGTTTTGTGTCCGT taagaacacgcactgaggtttttaattgcattttgtttcctctcgcaaaggtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTTTTTGATGACACAAGTGGTGGGTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCTTTCAGTGTCAATAACCTACTTGGAGACCCACTGGCCAACATGGCAATGGCCTATGGCACCTCCATAGCATCCCAACGGGAAGGACATAGTGCACAAAGAGgtagcctggatttcttttcttcccacgtagCTACACCGTTTTGTGTCTGT Alignment from CESAR gtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAA-GGGAAGGACATAGTGCACAAAGAG CTGCACCGTTTTGTGTCCGT taagaacacgcactgaggtttttaattgcattttgtttcctctcgcaaaggtTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTTTTTGATGACACAAGTGGTGGGTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCTTTCAGTGTCAATAACCTACTTGGAGACCCACTGGCCAACATGGCAATGGCCTATGGCACCTCCATAGCATCCCAACGGGAAGGACATAGTGCACAAAGAGgtagcctgccactctgcttctctctgccagCTACACCGTTTTGTGTCTGT Alignment from Spaln_aa2Genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAA-GGGAAGGACATAGTGCACAAAGAG------------------------------CTGCACCGTTTTGTGTCCGT taagaacacgcactgaggtttttaattgcattttgtttcctctcgcaaagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTTTTTGATGACACAAGTGGTGGGTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCTTTCAGTGTCAATAACCTACTTGGAGACCCACTGGCCAACATGGCAATGGCCTATGGCACCTCCATAGCATCCCAAcGGGAAGGACATAGTGCACAAAGAGGTAGCCTGGATTTCTTTTCTTCCCACGTAGCTACACCGTTTTGTGTCTGT Alignment from Spaln_nt2Genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAA-GGGAAGGACATAGTGCACAAAG------------------------------AGCTGCACCGTTTTGTGTCCGT taagaacacgcactgaggtttttaattgcattttgtttcctctcgcaaagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTTTTTGATGACACAAGTGGTGGGTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCTTTCAGTGTCAATAACCTACTTGGAGACCCACTGGCCAACATGGCAATGGCCTATGGCACCTCCATAGCATCCCAACGGGAAGGACATAGTGCACAAAGAGGTAGCCTGGATTTCTTTTCTTCCCACGTAGCTACACCGTTTTGTGTCTGT Alignment from Pairagon GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAA-GGGAAGGACATAGTGCACAAAG------------------------------AGCTGCACCGTTTTGTGTCCGT taagaacacgcactgaggtttttaattgcattttgtttcctctcgcaaagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTTTTTGATGACACAAGTGGTGGGTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCTTTCAGTGTCAATAACCTACTTGGAGACCCACTGGCCAACATGGCAATGGCCTATGGCACCTCCATAGCATCCCAACGGGAAGGACATAGTGCACAAAGAGGTAGCCTGGATTTCTTTTCTTCCCACGTAGCTACACCGTTTTGTGTCTGT Alignment from Exonerate_protein2genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAA-GGGAAGGACATAGTGCACAAAGAG CTGCACCGTTTTGTGTCCGT taagaacacgcactgaggtttttaattgcattttgtttcctctcgcaaagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTTTTTGATGACACAAGTGGTGGGTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCTTTCAGTGTCAATAACCTACTTGGAGACCCACTGGCCAACATGGCAATGGCCTATGGCACCTCCATAGCATCCCAACGGGAAGGACATAGTGCACAAAGAGgtagcctggatttcttttcttcccacgtagCTACACCGTTTTGTGTCTGT Alignment from Exonerate_coding2genome GTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCCCAA-GGGAAGGACATAGTGCACAAAGAG CTGCACCGTTTTGTGTCCGT taagaacacgcactgaggtttttaattgcattttgtttcctctcgcaaagGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTTTTTGATGACACAAGTGGTGGGTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCTTTCAGTGTCAATAACCTACTTGGAGACCCACTGGCCAACATGGCAATGGCCTATGGCACCTCCATAGCATCCCAACGGGAAGGACATAGTGCACAAAGAGgtagcctggatttcttttcttcccacgtagCTACACCGTTTTGTGTCTGT Alignment from GeneWise GCTTACCATTCGGCATATGGAGTCCACGGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTCTTCGATGATACAAGTGGTGGTTATTCCAGCCAACTGGGCGGATACCCAGCCCCAGGAGCTGATGTAGCCTTCAGTGTCAACAACCTGCTTGGAGACCCAGTGGCCAATATGGCAATGGCCTATGGCACCTCCATAGCATCC-CAAGGGAAGGACATAGTGCACAAAGAG CTGCACCGTTTTGTGTCCGT gaacacgcactgaggtttttaa---TTGCATTTTGTTTCCTCTCGCAAAGGTTCCAAGCATAGGACCCGGGCAGCTCCAGACCCTCCTCCACTTTTTGATGACACAAGTGGTGGGTATTCCAGCCAACTGGGTGGGTACCCAGCCCCGGGAGCTGATGTAGCTTTCAGTGTCAATAACCTACTTGGAGACCCACTGGCCAACATGGCAATGGCCTATGGCACCTCCATAGCATCCCAACGGGAAGGACATAGTGCACAAAGAGgtagcctggatttcttttcttcccacgtagCTACACCGTTTTGTGTCTGT #### Yif1a_ID835_7 --> 1 - 0 Original Alignment gATGATCCTTAGTGTG-CTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT ttgatcactaaatacatcattcgctcagatgtatgttcttttgcctacaggATGAATTTGAGCGTACCTTACAGCGCTGCTCTTTGGCAGTGACAGGTATTATGTGGTCTTGGCCTGGGCTTCATCTCCTCTTATGTACTTCATTgtctgtgtggggtggctctagcctcccttctatgactaatatctattgaa Alignment from CESAR gATGATCCTTAGTGTG-CTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT ttgatcactaaatacatcattcgctcagatgtatgttcttttgcctacaggATGAATTTGAGCGTACCTTACAGCGCTGCTCTTTGGCAGTGACAGGTATTATGTGGTCTTGGCCTGGGCTTCATCTCCTCTTATGTACTTCATTgtctgtgtggggtggctctagcctcccttctatgactaatatctaatact Alignment from Spaln_aa2Genome GATGATCCTTAGTGTG-CTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT ttgatcactaaatacatcattcgctcagatgtatgttcttttgcctacagGATGAATTTGAGCGTAcCTTACAGCGCTGCTCTTTGGCAGTGACAGGTATTATGTGGTCTTGGCCTGGGCTTCATCTCCTCTTATGTACTTCATTgtctgtgtggggtggctctagcctcccttctatgactaatatctattgaa Alignment from Spaln_nt2Genome GATGATCCTTAGTGTGC-TCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT ttgatcactaaatacatcattcgctcagatgtatgttcttttgcctacagGATGAATTTGAGCGTACCTTACAGCGCTGCTCTTTGGCAGTGACAGGTATTATGTGGTCTTGGCCTGGGCTTCATCTCCTCTTATGTACTTCATTgtctgtgtggggtggctctagcctcccttctatgactaatatctattgaa Alignment from Pairagon GATGATCCTTAGTGTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT ttgatcactaaatacatcattcgctcagatgtatgttcttttgcctacaggatgaatttgagcgtaccttacag-----------------------CGCTGCTCTTTGGCAGTGACAGGTATTATGTGGTCTTGGCCTGGGCTTCATCTCCTCTTATGTACTTCATTgtctgtgtggggtggctctagcctcccttctatgactaatatctattgaa Alignment from Exonerate_protein2genome GATGATCCTTAGTGTG-CTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT ttgatcactaaatacatcattcgctcagatgtatgttcttttgcctacagGATGAATTTGAGCGTACCTTACAGCGCTGCTCTTTGGCAGTGACAGGTATTATGTGGTCTTGGCCTGGGCTTCATCTCCTCTTATGTACTTCATTgtctgtgtggggtggctctagcctcccttctatgactaatatctattgaa Alignment from Exonerate_coding2genome GATGATCCTTAGTGTG-CTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT ttgatcactaaatacatcattcgctcagatgtatgttcttttgcctacagGATGAATTTGAGCGTACCTTACAGCGCTGCTCTTTGGCAGTGACAGGTATTATGTGGTCTTGGCCTGGGCTTCATCTCCTCTTATGTACTTCATTgtctgtgtggggtggctctagcctcccttctatgactaatatctattgaa Alignment from GeneWise GATGATCCTTAGT-GTGCTCACGGGGCTGCTCTTCGGCAGTGATGGCTACTACGTGGCCCTGGCCTGGACATCATCTGCGCTTATGTACTTCATT ttgatcactaaatacatcattcgctcagatgtatgttcttttgcctacagGATGAATTTGAGCGTACCTTACAGCGCTGCTCTTTGGCAGTGACAGGTATTATGTGGTCTTGGCCTGGGCTTCATCTCCTCTTATGTACTTCATTgtctgtgtggggtggctctagcctcccttctatgactaatatctattgaa #### Zdhhc16_ID8350_7 --> 1 - 0 Original Alignment tTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGG-TTACAGGCCAAGGGCAGG tcaatcaaagccccaggagtttcaggttctgactctctctccacccctagtTCTGTGGCCCTGGCTCTGGGTGCCCTTACCATGTGGCACGCTGTCCTGATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGCTTACAGGCCAAGGGCAGGgtgcttgttggaggcaccgctttattatgtggaaaaatggtcatgggtat Alignment from CESAR tTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGG-TTACAGGCCAAGGGCAGG tcaatcaaagccccaggagtttcaggttctgactctctctccacccctagtTCTGTGGCCCTGGCTCTGGGTGCCCTTACCATGTGGCACGCTGTCCTGATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGCTTACAGGCCAAGGGCAGGgtgcttgttggaggcaccgctttattatgtggaaaaatggtcatgggtat Alignment from Spaln_aa2Genome TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG--- tcaatcaaagccccaggagtttcaggttctgactctctctccacccctagTTCTGTGGCCCTGGCTCTGGGTGCCCTTACCATGTGGCACGCTGTCCTGATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGCTTACAGGCCAAGGGCAGGGTgcttgttggaggcaccgctttattatgtggaaaaatggtcatgggtat Alignment from Spaln_nt2Genome TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGG-TTACAGGCCAAGGGCAGG tcaatcaaagccccaggagtttcaggttctgactctctctccacccctagTTCTGTGGCCCTGGCTCTGGGTGCCCTTACCATGTGGCACGCTGTCCTGATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGCTTACAGGCCAAGGGCAGGgtgcttgttggaggcaccgctttattatgtggaaaaatggtcatgggtat Alignment from Pairagon TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGG-TTACAGGCCAAGGGCAGG tcaatcaaagccccaggagtttcaggttctgactctctctccacccctagTTCTGTGGCCCTGGCTCTGGGTGCCCTTACCATGTGGCACGCTGTCCTGATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGCTTACAGGCCAAGGGCAGGgtgcttgttggaggcaccgctttattatgtggaaaaatggtcatgggtat Alignment from Exonerate_protein2genome TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG tcaatcaaagccccaggagtttcaggttctgactctctctccacccctagTTCTGTGGCCCTGGCTCTGGGTGCCCTTACCATGTGGCACGCTGTCCTGATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGCTTACAGGCCAAGGGCAGggtgcttgttggaggcaccgctttattatgtggaaaaatggtcatgggtat Alignment from Exonerate_coding2genome TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGTTACAGGCCAAGGGCAGG tcaatcaaagccccaggagtttcaggttctgactctctctccacccctagTTCTGTGGCCCTGGCTCTGGGTGCCCTTACCATGTGGCACGCTGTCCTGATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGCTTACAGGCCAAGGGCAGggtgcttgttggaggcaccgctttattatgtggaaaaatggtcatgggtat Alignment from GeneWise TTCTGTGGCCCTGGCCCTGGGTGCCCTAACCATGTGGCATGCTGTTCTCATCAGTCGGGGTGAGACTAGCATCGAAAGGCATATCAACAAGAAGGAGAGGCGCCGG-TTACAGGCCAAGGGCAGG tcaatcaaagccccaggagtttcaggttctgactctctctccacccctagTTCTGTGGCCCTGGCTCTGGGTGCCCTTACCATGTGGCACGCTGTCCTGATCAGTCGGGGTGAGACTAGCATTGAAAGGCATATCAACAAGAAGGAGAGGCGCCGGCTTACAGGCCAAGGGCAGGgtgcttgttggaggcaccgctttattatgtggaaaaatggtcatgggtat #### Zfand5_ID4879_2 --> 2 - 2 Original Alignment ggACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAAC-TGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAag tgttctttaagggagagatgaatcagcactctccttccctgtctctacagggACAGCTAGTGGCTCTAATAGTCCCACCTCGGACGCTGCATCAGCACAGAAACCAGATGCTGGCTTGAATAACCTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAaggtgagcaggaccatttcttgcattttctagactaagctatcttcactgtg Alignment from CESAR ggACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAAC-TGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAag tgttctttaagggagagatgaatcagcactctccttccctgtctctacagggACAGCTAGTGGCTCTAATAGTCCCACCTCGGACGCTGCATCAGCACAGAAACCAGATGCTGGCTTGAATAACCTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAaggtgagcaggaccatttcttgcattttctagactaagctatcttcactgtg Alignment from Spaln_aa2Genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAAC-TGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG tgttctttaagggagagatgaatcagcactctccttccctgtctctacagGGACAGCTAGTGGCTCTAATAGTCCCACCTCGGACGCTGCATCAGCACAGAAACCAGATGCTGGCTTGAATAACcTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtgagcaggaccatttcttgcattttctagactaagctatcttcactgtg Alignment from Spaln_nt2Genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAAC-TGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG tgttctttaagggagagatgaatcagcactctccttccctgtctctacagGGACAGCTAGTGGCTCTAATAGTCCCACCTCGGACGCTGCATCAGCACAGAAACCAGATGCTGGCTTGAATAACCTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtgagcaggaccatttcttgcattttctagactaagctatcttcactgtg Alignment from Pairagon GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAA-CTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG tgttctttaagggagagatgaatcagcactctccttccctgtctctacagGGACAGCTAGTGGCTCTAATAGTCCCACCTCGGACGCTGCATCAGCACAGAAACCAGATGCTGGCTTGAATAACCTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtgagcaggaccatttcttgcattttctagactaagctatcttcactgtg Alignment from Exonerate_protein2genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAAC-TGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG tgttctttaagggagagatgaatcagcactctccttccctgtctctacagGGACAGCTAGTGGCTCTAATAGTCCCACCTCGGACGCTGCATCAGCACAGAAACCAGATGCTGGCTTGAATAACCTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtgagcaggaccatttcttgcattttctagactaagctatcttcactgtg Alignment from Exonerate_coding2genome GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAACAAC-TGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG tgttctttaagggagagatgaatcagcactctccttccctgtctctacagGGACAGCTAGTGGCTCTAATAGTCCCACCTCGGACGCTGCATCAGCACAGAAACCAGATGCTGGCTTGAATAACCTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtgagcaggaccatttcttgcattttctagactaagctatcttcactgtg Alignment from GeneWise GGACAGCTAGTGGTTCCAACAGTCCTACCTCAGATTCTGCATCTGTACAGAGAGCAGATGCTGGTTTAAAC-AACTGTGAAGGTGCTGCTGGCAGCACATCTGAAAAATCAAG tgttctttaagggagagatgaatcagcactctccttccctgtctctacagGGACAGCTAGTGGCTCTAATAGTCCCACCTCGGACGCTGCATCAGCACAGAAACCAGATGCTGGCTTGAATAACCTGTGAGGGTGCTGCTGGCAGTACATCTGAAAAATCAAGgtgagcaggaccatttcttgcattttctagactaagctatcttcactgtg #### Zp1_ID3062_10 --> 0 - 1 Original Alignment GTCTATTTCTTCTGT-AGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAa cactggcaattgtttatctcagcctacccatgtggttattttattggcagATCTATTTCTTCTGTCAGTGCCTCTGCCTGTCACCCCCTGGGGTCTGATACATGCTCTACTACATGTGATTCTGGGATAGCAagtaatcaaaacggactgtattagggtattaattttccttatggttacatt Alignment from CESAR GTCTATTTCTTCTGT-AGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAa cactggcaattgtttatctcagcctacccatgtggttattttattggcagATCTATTTCTTCTGTCAGTGCCTCTGCCTGTCACCCCCTGGGGTCTGATACATGCTCTACTACATGTGATTCTGGGATAGCAagtaatcaaaacggactgtattagggtattaattttccttatggttacatt Alignment from Spaln_aa2Genome GTCTATTTCTTCTGT-AGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAA cactggcaattgtttatctcagcctacccatgtggttattttattggcagATCTATTTCTTCTGTcAGTGCCTCTGCCTGTCACCCCCTGGGGTCTGATACATGCTCTACTACATGTGATTCTGGGATAGCAAgtaatcaaaacggactgtattagggtattaattttccttatggttacatt Alignment from Spaln_nt2Genome GTCTATTTCTTCTGT-AGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAA cactggcaattgtttatctcagcctacccatgtggttattttattggcagATCTATTTCTTCTGTCAGTGCCTCTGCCTGTCACCCCCTGGGGTCTGATACATGCTCTACTACATGTGATTCTGGGATAGCAAgtaatcaaaacggactgtattagggtattaattttccttatggttacatt Alignment from Pairagon GTCTATTTCTTCTGT-AGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAA cactggcaattgtttatctcagcctacccatgtggttattttattggcagATCTATTTCTTCTGTCAGTGCCTCTGCCTGTCACCCCCTGGGGTCTGATACATGCTCTACTACATGTGATTCTGGGATAGCAAgtaatcaaaacggactgtattagggtattaattttccttatggttacatt Alignment from Exonerate_protein2genome GTCTATTTCTTCTGT-AGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAA cactggcaattgtttatctcagcctacccatgtggttattttattggcagATCTATTTCTTCTGTCAGTGCCTCTGCCTGTCACCCCCTGGGGTCTGATACATGCTCTACTACATGTGATTCTGGGATAGCAAgtaatcaaaacggactgtattagggtattaattttccttatggttacatt Alignment from Exonerate_coding2genome GTCTATTTCTTCTGT-AGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAA cactggcaattgtttatctcagcctacccatgtggttattttattggcagATCTATTTCTTCTGTCAGTGCCTCTGCCTGTCACCCCCTGGGGTCTGATACATGCTCTACTACATGTGATTCTGGGATAGCAAgtaatcaaaacggactgtattagggtattaattttccttatggttacatt Alignment from GeneWise GTCTATTTCTTCTGT-AGTGCCTCTGCCTGCCACCCTCTGGGGTCTGATACATGCTCTACTACGTGTGACTCTGGGATAGCAA cactggcaattgtttatctcagcctacccatgtggttattttattggcagATCTATTTCTTCTGTCAGTGCCTCTGCCTGTCACCCCCTGGGGTCTGATACATGCTCTACTACATGTGATTCTGGGATAGCAAgtaatcaaaacggactgtattagggtattaattttccttatggttacatt #### Zp1_ID3064_8 --> 2 - 2 Original Alignment atAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGT-CTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATgg gcagcttgaagtacagcctagccttagttttctctttcttcctcccgcagatAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAATACCCCCTTTTAAGACTGCTGCAGAAACCAGCCTATGTTCAGGTGCGGCTTCTGCAGAAAACT---GCTGGCCCTGGTTCTGGTATTACACCAGTGCTGGGCCACACCAACTACTAGC---TTTGATCAGCCCCAGTGGCCAATTCTGTCAGATgcgtaagtcataaaaggagaatgtcccacatacagggtatgcatgctttcta Alignment from CESAR atAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATgg gcagcttgaagtacagcctagccttagttttctctttcttcctcccgcagatAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAATACCCCCTTTTAAGACTGCTGCAGAAACCAGCCTATGTTCAGGTGCGGCTTCTGCAGAAAACT--GCTGGCCCTGGTTCTGGTATTACACCAGTGCTGGGCCACACCAACTACTAGC---TTTGATCAGCCCCAGTGGCCAATTCTGTCAGATgcgtaagtcataaaaggagaatgtcccacatacagggtatgcatgctttcta Alignment from Spaln_aa2Genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttgaagtacagcctagccttagttttctctttcttcctcccgcagATAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAATACCCCCTTTTAAGACTGCTGCAGAAACCAGCCTATGTTCAGGTGCGGCTTCTGCAGAAAACTG--CTGGCCCTGGTTCTGGTATTACACCAGTGCTGGGCCACACCAACTACTAGC---TTTGATCAGCCCCAGTGGCCAATTCTGTCAGATGCgtaagtcataaaaggagaatgtcccacatacagggtatgcatgctttcta Alignment from Spaln_nt2Genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttgaagtacagcctagccttagttttctctttcttcctcccgcagATAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAATACCCCCTTTTAAGACTGCTGCAGAAACCAGCCTATGTTCAGGTGCGGCTTCTGCAGAAAACTGCTGGC--CCTGGTTCTGGTATTACACCAGTGCTGGGCCACACCAACTACTAG---CTTTGATCAGCCCCAGTGGCCAATTCTGTCAGATGCgtaagtcataaaaggagaatgtcccacatacagggtatgcatgctttcta Alignment from Pairagon ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttgaagtacagcctagccttagttttctctttcttcctcccgcagATAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAATACCCCCTTTTAAGACTGCTGCAGAAACCAGCCTATGTTCAGGTGCGGCTTCTGCAGAAAACTGCTGGC--CCTGGTTCTGGTATTACACCAGTGCTGGGCCACACCAACTACTAG---CTTTGATCAGCCCCAGTGGCCAATTCTGTCAGATGCgtaagtcataaaaggagaatgtcccacatacagggtatgcatgctttcta Alignment from Exonerate_protein2genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCC-AGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttgaagtacagcctagccttagttttctctttcttcctcccgcagATAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAATACCCCCTTTTAAGACTGCTGCAGAAACCAGCCTATGTTCAGGTGCGGCTTCTGCAGAAAACT---GCTGGCCCTGGTTCTGGTATTACACCAGTGCTGGGCCACACCAACTACTAGC---TTTGATCAGCCCCAGTGGCCAATTCTGTCAGATGCgtaagtcataaaaggagaatgtcccacatacagggtatgcatgctttcta Alignment from Exonerate_coding2genome ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCC-AGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttgaagtacagcctagccttagttttctctttcttcctcccgcagATAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAATACCCCCTTTTAAGACTGCTGCAGAAACCAGCCTATGTTCAGGTGCGGCTTCTGCAGAAAACT---GCTGGCCCTGGTTCTGGTATTACACCAGTGCTGGGCCACACCAACTACTAGC---TTTGATCAGCCCCAGTGGCCAATTCTGTCAGATGCgtaagtcataaaaggagaatgtcccacatacagggtatgcatgctttcta Alignment from GeneWise ATAAGACTTTCAGCTCCTACTATCAGGGGAGTGACTATCCCCTTGTGAGACTGCTCCGGGAACCAGTCTATGTAGAGGTCCGACTCCTGCAGAGAACTGATCCCAGTCTGGTTCTGGTGCTACACCAGTGCTGGGCCACGCCCACCACCAGCCCCTTTGAGCAGCCCCAATGGCCTATTCTGTCAGATGG gcagcttgaagtacagcctagccttagttttctctttcttcctcccgcagATAAAACTTTCAGCTCCTTCTATCAAGGAAGTGAATACCCCCTTTTAAGACTGCTGCAGAAACCAGCCTATGTTCAGGTGCGGCTTCTGCAGAAAACTGCTG--GCCCTGGTTCTGGTATTACACCAGTGCTGGGCCACACCAACTACTAGC---TTTGATCAGCCCCAGTGGCCAATTCTGTCAGATGCgtaagtcataaaaggagaatgtcccacatacagggtatgcatgctttcta #### Zp1_ID3069_3 --> 0 - 1 Original Alignment GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTA-GGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAg tactaagcagaagccttatccagcggtttggtttttttttttttttgaagGATGGACGATTTCACCTGAGAGTTTTTGTACAAGCTGTCTTAACAAATAGCCCTGTAGACATAGCACAAGATGTCACACTGATCTGCCCTAAACCAGATCACACTGTGACTCCAGACCCCTATCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTCCACCCTATCCCTGAG---------GCTGGGTCTGGACAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCCTCACTACGGACTTGGACCTACAGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCATGGGAGTTGACTGAGTTAGACTCTGTAggtgagtcaacctaaattttgtatagactgagtcttatggcctgtgatcgt Alignment from CESAR GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTA-GGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAg tactaagcagaagccttatccagcggtttggtttttttttttttttgaagGATGGACGATTTCACCTGAGAGTTTTTGTACAAGCTGTCTTAACAAATAGCCCTGTAGACATAGCACAAGATGTCACACTGATCTGCCCTAAACCAGATCACACTGTGACTCCAGACCCCTATCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTCCACCCTATCCCTGAG---------GCTGGGTCTGGACAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCCTCACTACGGACTTGGACCTACAGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCATGGGAGTTGACTGAGTTAGACTCTGTAggtgagtcaacctaaattttgtatagactgagtcttatggcctgtgatcgt Alignment from Spaln_aa2Genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTA-GGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG tactaagcagaagccttatccagcggtttggtttttttttttttttgaagGATGGACGATTTCACCTGAGAGTTTTTGTACAAGCTGTCTTAACAAATAGCCCTGTAGACATAGCACAAGATGTCACACTGATCTGCCCTAAACCAGATCACACTGTGACTCCAGACCCCTATCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTCCACCCTATCCCTGAG---------GCTGGGTCTGGACAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCCTCACTAcGGACTTGGACCTACAGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCATGGGAGTTGACTGAGTTAGACTCTGTAGgtgagtcaacctaaattttgtatagactgagtcttatggcctgtgatcgt Alignment from Spaln_nt2Genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTA-GGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG tactaagcagaagccttatccagcggtttggtttttttttttttttgaagGATGGACGATTTCACCTGAGAGTTTTTGTACAAGCTGTCTTAACAAATAGCCCTGTAGACATAGCACAAGATGTCACACTGATCTGCCCTAAACCAGATCACACTGTGACTCCAGACCCCTATCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTCCACCCTATCCCTGA---------GGCTGGGTCTGGACA------TATCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCCTCACTACGGACTTGGACCTACAGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCATGGGAGTTGACTGAGTTAGACTCTGTAGgtgagtcaacctaaattttgtatagactgagtcttatggcctgtgatcgt Alignment from Pairagon GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTA-GGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG tactaagcagaagccttatccagcggtttggtttttttttttttttgaagGATGGACGATTTCACCTGAGAGTTTTTGTACAAGCTGTCTTAACAAATAGCCCTGTAGACATAGCACAAGATGTCACACTGATCTGCCCTAAACCAGATCACACTGTGACTCCAGACCCCTATCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTCCACCCTATCCCTGA---------GGCTGGGTCTGGACATA------TCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCCTCACTACGGACTTGGACCTACAGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCATGGGAGTTGACTGAGTTAGACTCTGTAGgtgagtcaacctaaattttgtatagactgagtcttatggcctgtgatcgt Alignment from Exonerate_protein2genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTA-GGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG tactaagcagaagccttatccagcggtttggtttttttttttttttgaagGATGGACGATTTCACCTGAGAGTTTTTGTACAAGCTGTCTTAACAAATAGCCCTGTAGACATAGCACAAGATGTCACACTGATCTGCCCTAAACCAGATCACACTGTGACTCCAGACCCCTATCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTCCACCCTATCCCTGAG---------GCTGGGTCTGGACAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCCTCACTACGGACTTGGACCTACAGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCATGGGAGTTGACTGAGTTAGACTCTGTAGgtgagtcaacctaaattttgtatagactgagtcttatggcctgtgatcgt Alignment from Exonerate_coding2genome GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCCCTA-GGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG tactaagcagaagccttatccagcggtttggtttttttttttttttgaagGATGGACGATTTCACCTGAGAGTTTTTGTACAAGCTGTCTTAACAAATAGCCCTGTAGACATAGCACAAGATGTCACACTGATCTGCCCTAAACCAGATCACACTGTGACTCCAGACCCCTATCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTCCACCCTATCCCTGAG---------GCTGGGTCTGGACAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCCTCACTACGGACTTGGACCTACAGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCATGGGAGTTGACTGAGTTAGACTCTGTAGgtgagtcaacctaaattttgtatagactgagtcttatggcctgtgatcgt Alignment from GeneWise GATGGGCGGTTCCACCTGAGGGTGTTCATACAAGCCGTCCTACCCAATGGCCGTGTGGATATAGCACAAGATGTCACACTGATCTGTCCCAAACCAGACCACACCGTGACTCCGGACCCCTACCTGGCTCCACCCACCACACCTGAGCCTTTTACACCTCATGCTTTTGCCCTTCACCCCATCCCTGACCACACCTTGGCTGGGTCTGGCCACACTGGTCTCACTACGTTGTACCCAGAACAGAGCTTCATCCATCCAACTCCTGCTCCGCCATCC-CTAGGACCTGGACCTGCTGGATCCACTGTACCTCACTCCCAATGGGGCACGCTGGAGCCCTGGGAATTGACTGAGCTGGATTCTGTAG tactaagcagaagccttatccagcggtttggtttttttttttttttgaagGATGGACGATTTCACCTGAGAGTTTTTGTACAAGCTGTCTTAACAAATAGCCCTGTAGACATAGCACAAGATGTCACACTGATCTGCCCTAAACCAGATCACACTGTGACTCCAGACCCCTATCTTGCTCCACCCACCAGGCCTGAGCCTTTATCACCTCATGCTTTTGCTCTCCACCCTATCCCTGAG---------GCTGGGTCTGGACAT------ATCACTATGTTGTACCCAGAACAAAGCTTCAAGCATCCAACTCCTGCTCCACCCTCACTACGGACTTGGACCTACAGGATCTACTGTACCCCACTCACAATGGGGTACACTTGAGCCATGGGAGTTGACTGAGTTAGACTCTGTAGgtgagtcaacctaaattttgtatagactgagtcttatggcctgtgatcgt ####